Detail information of Os10g0364900_circ_g.1


General Information
CircRNA Name Os10g0364900_circ_g.1
ID in PlantcircBase osa_circ_006612
Alias Os_ciR1738
Organism Oryza sativa
Position chr10: 11390682-11390803  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os10g0364900
Parent gene annotation Conserved hypothetical protein. (Os10t0364900-01)
Parent gene strand +
Alternative splicing Os10g0364900_circ_g.2 Os10g0364900_circ_g.3 Os10g0364900_circ_g.4 Os10g0364900_circ_g.5
Support reads 9
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os10t0364900-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGAAGAGGAGGAGAAGAGCAAGAAGGGCATGTGTGAAGGAGAAGAGGAGGAGAAGAACAAatt
catgtgcagcaggacaggtgcaggaggaccaatgaagagaagatgaagaagatgatgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATTCATGTGCAGCAGGACAGGTGCAGGAGGACCAATGAAGAGAAGATGAAGAAGATGATGGCAG
AAGAGGAGGAGAAGAGCAAGAAGGGCATGTGTGAAGGAGAAGAGGAGGAGAAGAACAA
Conservation Information
Conserved circRNAs NA
PMCS 0.515491803
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015