Detail information of BGIOSGA016849_circ_g.2


General Information
CircRNA Name BGIOSGA016849_circ_g.2
ID in PlantcircBase osi_circ_014602
Alias Chr04:27628269_27632023(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 25804841-25808596  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ie-circRNA
Identification method CIRI2
Parent gene BGIOSGA016849
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016849_circ_g.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-TA
Number of exons covered BGIOSGA016849-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCGACTCCAAAGAATTAAGAAGCAAGAAGACAATTCAAGGTCAGAAAATCATGCTTACCTGTC
ATTGGCACCATATATGATATTTGTAGAAATTTTCATccttcacccacgttgacatcaatttcct
gtacaacagttcaaaaaaaacaaatgattgatttcctagatagcaagcacagcagaagacaatt
caaaaaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTCACCCACGTTGACATCAATTTCCTGTACAACAGTTCAAAAAAAACAAATGATTGATTTCC
TAGATAGCAAGCACAGCAGAAGACAATTCAAAAAAGGAACACAAAACAAAATATAAGGAACAAA
TATTTCATTTACTGACCATTGCTGTCATCCCACAATCCAAGCAGCTCCAAGGCCCTTGCTCCCA
GAATCAACACATGCAAGAGCAACAAAAGCCAAAACAAAGTTGCTAAAAAGTACACATATAACCC
AGTCAATATCACACAGAGAACAATAGACCAAAAAAATGAAAATGTCATGTGGACACATCTAAAA
ATTATAGATAAGAATATCTTGCACATCTGAAATTAGAGACAAAAATTCCTCAACAGTTGCTATC
TCAGATAACTTGTGAGATAACGGGCACCACACTAAACCTAAAAATTCCATGCTAAGCAATGGAA
GTAAACTAGAGACAGTATGTCAAGCTTCTATCAAGGAAGAAGCCTCAGGTCAATCTATATTCTA
CCAAGAGAAATAGAGATAACAGAAAAAAAAACAGTACAAAACTAGGCCTACATTACTAACTAGC
AAAAAAAAAAATATATCAGGCACATATCTAAGAAAATAAAGATGCCTAGGGTTCCCCAAACTAC
AAGTCTCTGATAAAACCAATATCAATAATTAACAATCTAACTACCAATAGTCAGTTACAGTGCG
AAATAATAAAAATTACAACTGTAACTAAGGTATATTTCCACTGTAAGTGGTGTGAGTTGCACTG
TAAGTGTGTTTTAGGACTGCATGAAACCTAAAATATTGACTTCATCTGTTAAATCAAAGATTCA
AAACTGAAAATACAATTTGAAAACTAAACTAAATCCCCAGATGAAAGAAGTGGGCATCAAATAC
CATAACTAAATCAAAAAAGATACAAGGTTTAAGATCAGCCATTCAAATGCCTCAAGAGATATAT
TTTTTGTGGGTAATTTCCTAATAGAAAACATATATTGAAGCTGACATCCACATAAATGCAACCA
ATAAAAAAACATGGAGCTATACATCCATAAATTTTTCTGCAAGAAAAAGTTTGACGATCATAGA
ATTTACCTGGCTAGTTCTCCTTTTCTGTTTTAATGAAAGGAATAAGTAGACACATAAGAGTTAT
GTCCCGGGCAGCACTTGTTAAGCAAAAACAAAGCAGAATCTATGCAAGACAAAGAAAGAAAGTT
AATGTTGGTTGCATACATTAACAGACAACATAAATGAAGCGGCCTCACACTTGCAATGGCACAA
GAAGGCAAGCTAATTTCAGTAAAAACATCTAATTAATTCAAAAATGGATGATAACCCTACACTG
CATTGACTGGAAAAAAAATCTACAACATAAGGGGAAGCAATACAAACTCACTATTGTTTTTATG
AAACTAAAAGTACACATATTCTAACTTATGCATGCACAACTGACAAAAAAGAGTCCCTAGGGTT
CCCAAACTACAAGTGTCCTAGTTTTCACACAAATCAGTAATATACCCAAGGTCAATCAATTACA
AAATCTAACTACCAACAGTCAGTTACAGTGAGAGATAACAGAAATTACAACTGTAACTTAGGTA
TATTTCCACTGTAACTGGACTGTAAATGGTGACGAGTTGTACTGTAAGTATGTTTTAAGTTAGA
ATTACTGTAATTTCAGACTGCATGAAATCCAAAAATATTTAAGTTAGGTAGTCAGATTACCTAG
AACATATAAAACTAACATGCTTTTTAAATATTTCTATTACATGCACCAACCATACTTGATTTAA
ATTACATGCAGGGGCTGATAGAACAAAGTCTCAAGTAACAGGAAATACAACTGAAGAATTAAGA
AGAAAGAAGACAGTTGAAGGTTAGAAAATCATGCTTACCTATTATTGTGCATCATATCTGATCT
TCATAGAAAATTTCATCTAGCACAAATTTATGTATGTAAAAAATTAGTCATGAAGCATGACAAA
AATTACAGTGATAATTAACCAAAAAATTAGAACTGTATATTCAGTTACAGTGAGAAATAACAAA
AATTACAACTGTAACTGCAGTGCATATGGACTGTAACTGGACTATGACTGGAATCATGCATAAC
TTTGTCCAAAAATCCAATACTCATGCAACAACATCAACATTATTCCCTACTATAACATGATCTA
AATCATATTATAAATTACCTAAATGATGGCCTATCTTCAACCAGAAAATCATGTCTACTATCAA
TGAAATTGAGAACTGAAATACTATTTCAAAACTTAACAAAATTACATAAGATTAGAACAGTCAG
TTATAATTGCAAATGTAACTGAGGTATAGTTCCACTGTAACTTCACTGAGTTGTACTGTAATTA
TGTTTTAAGTTAGAATTATTGTAATTACATTTTGTAATGCTTTTATTTACATTTTGCAGGAACA
ATCTCAGCTGTAGAATCAACTAAGGACATCAAGTTGGACACCAAGAAAAAAGAACCACTACAGA
TGAAAAGTACATAAACAACTATAAATAGATACTATATTGTTCCCAATTAACTCAAAATAGAAAT
CAAACTATTTTGACCTATTGAACAAATTATATTAATGAACCTTTCATACTTACCAAACATAACA
CTGTAGTTTCTCATGAAAACTTCAATTTTCTCCAGTTGCAGGTCATGAAGAAGTACAAGATGAA
AAAAGAAGAAGCCAAGAATCAGATAAGAGCAATATTATGGCAAAACATATTAAAGAAACCAAAA
GTCAGACCACTGAAGTTGTTCCAGGTCAGAATGGCATTGTTATTACTATATTCATGCAAATCTT
TCAAGATACTATTGAAACATTGTAATTATAGTGGACTAGCATTCTAAACTTTGTATACAACTAA
AGTTGAACTATAACAGACCTAATTTTGACTACATCTGAGTGATAAAAACTGCAAAGAATCTAAT
GACATAATTACAAAATTATGTCACTAAACTATATGCAGATTTTCCTATTCAAACGAAATCAAAA
TTAAGTACTTATATAAACACAAAACATGCACAAACACATACTTGTATTGAATTTCTATTTCAGT
ACTAATGCAAGAACATCAGTATTAGTTCCTATTGTAGCTTCTATCAGAAATTCAGTACTCATGC
AATAATATCAGCATTACTTCGTATTGTAACATGTTCTAAAAATATTAATATAACCTAACACATG
CAGGGGCTGATAGAACAAAGGCTGAAGTAACAAGGAATTCACAATCAGAGAGATGTGGAAGTGA
CAGAATTGACTCTGAAGAATTAAGAAGAAACAATACAGTTGAAGGTTAGAAAAAACATGCTTAC
CTATTATTATGCACCATATCTGATCTTTGTTGAAAATTTCATCTAGTACAAATTATATAAGGCA
AAAATTAGAGGTGAAGCATGATAAATAAAAATAATCTAACTACCTTAATTCAGTTACAGTTAGA
AATAACAAAAGTTACAGCTGTAACTACAGTGCATATGGACTGTAACTGGAATCATGCTTAACTT
TCTCCTAAAATTCAATAGCATCAGCATTATTCCATATTGTAACATGTTATAAAATGACCCAAAA
CATGCAGGATGTCATAGATTGCAGGCTCAAGTTACAGGGAATACACAATCAAAGACATGTGTAA
GTGACATAATCGACTCCAAAGAATTAAGAAGCAAGAAGACAATTCAAGGTCAGAAAATCATGCT
TACCTGTCATTGGCACCATATATGATATTTGTAGAAATTTTCAT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021