Detail information of Os04g0378200_circ_g.2


General Information
CircRNA Name Os04g0378200_circ_g.2
ID in PlantcircBase osa_circ_023555
Alias Os_ciR4794
Organism Oryza sativa
Position chr4: 18469550-18469979  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os04g0378200
Parent gene annotation Sterile alpha motif SAM domain containing protein. (Os04t0378200
-01)
Parent gene strand +
Alternative splicing Os04g0378200_circ_g.3 Os04g0378200_circ_g.4 Os04g0378200_circ_g.5
Support reads 4/3
Tissues root/root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os04t0378066-00:2
Os04t0378066-00:2
Os04t0378200-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGTGAAAGTCACAAGGCGTGAAAATGCAGATGTAATGCCTGTACGTCAAAGTAAGAAAGTACCA
AAACCGACGTCATCGAAGAAGACATCTCAGCCGAAGgcaacggcaaactgatgaaaaatggaag
catgatctttaccgggaagacgatgaaccagcttcaagtaataaaagaaagaagtttttgatgt
accttaaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 337
Transcript exons: 18469550-18469614,18469708-18469979
GCAACGGCAAACTGATGAAAAATGGAAGCATGATCTTTACCGGGAAGACGATGAACCAGCTTCA
AAATCAATTGATCCACGGGATTTGCGATTGAAGCTTCAGAAGAAAAGCTCTCAGCAAAGCTTTG
CTGGCCAAAGGGGTTCTGGTGTACGTGATCTACGTGAGATGCTTTCTGGAACAATGCACCCACA
GCCAGTCAATGCGGACCCTCCAAAGGCAAAGCCATCATCAGAGATCGTGAAAGTCACAAGGCGT
GAAAATGCAGATGTAATGCCTGTACGTCAAAGTAAGAAAGTACCAAAACCGACGTCATCGAAGA
AGACATCTCAGCCGAAG

Genomic sequence GCAACGGCAAACTGATGAAAAATGGAAGCATGATCTTTACCGGGAAGACGATGAACCAGCTTCA
AGTAATAAAAGAAAGAAGTTTTTGATGTACCTTAAATAAAGACAGGCCTTTTGTATTCTTATTT
AATTCTTATCTGCCTGTGCATTATGTTAAGAATCAATTGATCCACGGGATTTGCGATTGAAGCT
TCAGAAGAAAAGCTCTCAGCAAAGCTTTGCTGGCCAAAGGGGTTCTGGTGTACGTGATCTACGT
GAGATGCTTTCTGGAACAATGCACCCACAGCCAGTCAATGCGGACCCTCCAAAGGCAAAGCCAT
CATCAGAGATCGTGAAAGTCACAAGGCGTGAAAATGCAGATGTAATGCCTGTACGTCAAAGTAA
GAAAGTACCAAAACCGACGTCATCGAAGAAGACATCTCAGCCGAAG
Conservation Information
Conserved circRNAs osi_circ_007486*
PMCS 0.511615097
Functional Information
Coding potential Y
Potential coding position 18469810-18469561(+)
18469582-18469890(-)
Potential amino acid sequence MLSGTMHPQPVNADPPKAKPSSEIVKVTRRENADVMPVRQSKKVPKPTSSKKTSQPKATAN*(+
)
MLPFFISLPLPSAEMSSSMTSVLVLSYFDVQALHLHFHAL*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017