Detail information of Os10g0556700_circ_g.6


General Information
CircRNA Name Os10g0556700_circ_g.6
ID in PlantcircBase osa_circ_007966
Alias Os_ciR6890
Organism Oryza sativa
Position chr10: 21890424-21890633  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method find_circ
Parent gene Os10g0556700
Parent gene annotation CCR4-Not1 complex component, mRNA deadenylation (Os10t0556700-01
)
Parent gene strand -
Alternative splicing Os10g0556700_circ_g.5
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACCATCATTCAGGTATTATAGATAGGTTAAAATGGGAGAAACAAAGGGGGTAGAATATGCCGC
ATTCCGTTTCCTAGGCTAAAAGCAGATGCGGCATAGgacacagacagaaatttataacatttgg
cccattgcatatattgtggacagacatgcacattaaaaacatttgctccactgcactttcttaa
gaaaattt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GACACAGACAGAAATTTATAACATTTGGCCCATTGCATATATTGTGGACAGACATGCACATTAA
AAACATTTGCTCCACTGCACTTTCTTAAGAAAATTTTAAAACAAGTAACCATCATTCAGGTATT
ATAGATAGGTTAAAATGGGAGAAACAAAGGGGGTAGAATATGCCGCATTCCGTTTCCTAGGCTA
AAAGCAGATGCGGCATAG
Conservation Information
Conserved circRNAs NA
PMCS 0.157993175
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015