Detail information of POPTR_0004s11650_circ_ig.2


General Information
CircRNA Name POPTR_0004s11650_circ_ig.2
ID in PlantcircBase pop_circ_001308
Alias Chr04:10885534-10890316
Organism Populus trichocarpa
Position chr4: 10435842-10440630  JBrowse»
Reference genome Populus trichocarpa genome v3.0
Type   ig-circRNA
Identification method CIRI2; circRNA_finder
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing POPTR_0004s11650_circ_ig.1
Support reads 3
Tissues leaf; cambium; xylem
Exon boundary   NA-NA
Splicing signals   CT-GA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAAGGAGCCGACAACAACAAGGGAAGAGAAGAAGAACTTAAACATTGAGGGAGAAGGGGTTCC
AAGGAGCAGAAAACACAACTAGGATAAACCTAAGACccttcatagagcaatttcaaacattgta
gttaagttgcatgtaagaatacaacagccctagggtaaatttttgagaaaatatccaggtaagt
taaggtaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTCATAGAGCAATTTCAAACATTGTAGTTAAGTTGCATGTAAGAATACAACAGCCCTAGGGT
AAATTTTTGAGAAAATATCCAGGTAAGTTAAGGTAAGGATGAGTGTTAAGGAGAGGTAATCAAA
GGCTATGTGATATTCTTGACCCAACTAGAGGAAAATAAAACTAGAGGAAGGTTTGCAGATCTTC
GGCCAAATATGAACAAAGAGGGAGGAGAAATATGTTGATACTAATTAAGCATGCATGTTGAGAG
ACAATGTTGAATTTCATAAAATTATGATATGCTGATTTTTGAAAACATCTGAACAACCTTGTTA
CGCATATTCTTGTGAAGCCTAATCCCTAAATGAACTATGTCCTTATGTGTGATTGTTAACATGA
GAAAAGGATGAATTCTGTAGGTAATAGTGGACGAAGGAAGGAAAAGAAATGCCTAAAAAATGAT
GGTTTGTATGCTGAACACCCAAATCGGGAGAAAATCTTGGTTGTTATGTTAACTAACTTGCGCT
CAAGAATCGACATAGATAAAGGTATAATTTAAAGTATCACCCCATAGAAGTTGTAGTCTGAGAT
GTTAGCTATCCAACGAGTTCGACCTAGCTTAATTTAGAGCTCTAGAGCTCTAGATATAGGTAAA
AATCTGAAGGGAGGTTGAGTTGTCACCCCTACTGGCAGATTCGACCAATTTAACAAAATGGTGA
AATTTAGTCACGTTAAGAATATAATTTATTCCTCCCTTGTAAAATATGCAGCATCATGTCCTGA
CTTTTTTTTAAAAAATAAACCTTATTTTAAATTTAATTAGTGATGTTTGTTATGACTGCTAATG
AACCAAAATCCTAAAGGATAATAATCGGAGGGTAAATGTAAAAATAATGGTAAAAGAGAAACGA
ATGTTGTCACCATTTCTATTACTATGTTGTGAAATGTGATTGAGAATGGAATAATGATGGGTAC
TTGTGGATTCAGGAGGAATCGCAGGAGGAGTACAACAACAACAAGGGAACGCAAGTCGAGCTTC
TACAGCAGGTAGGTATTCTACACCTATATCTTTCTTAGTTAATACGATTCTAGTTATTTGTTTG
GATTATAAATCTTATGCCTATGAATGAGAACGAAAAGAGAAAAGATGAAATGACATGAATGAGA
ACCGGAAAACCAAATTTGATTTATAAGTTCCTTTGGAGAGATTTGAAGAAAATAATGAGTTTTA
GACAGGGGGCTACCACACAAAGCCAACAACAATCAGTGACAGTGAATCGACCCGTACAACCTAC
TCAGTCGAGAGCAAGTGCTAATAGGGGCCGACCCTGGTTCTAAGAAGAGAGGACTCGAAGGCAA
GATATTTCACATGACTCACGAAGATATGAGGGTGATGCCAAATGTTGTAGCATGTACATTGCAA
CTAGGCTCAATACAAGTTGATACTTTAATTGATCCTGAAGCTAGTCAATTTTTTTTAGTTTATT
GAATTGTGAATAATTTAAATGTGCCACTAAGTAGACTAAGTGTAGTAATGACAATTAGTACGCC
ATTAATAGAAAACATAGACATTGACGATGTATATAAAGGTGTGGTATTATATATCGAGAGGACA
AAATTGAGGGTGGACCTTGTGCCATTAAAATTATATGACTATGATTTGATTCTAGGTATGAATT
GACTGAGTAGACATAAAGCACAAGTAGATTGCTTTACTAAAACTATGGTTATCCAGGGGGACGG
TGAAAAAAAGGTAGTATTTAGGGGAGAGAGAAGGGTAGTACCAAATTCTATAATTTCGGTCATG
ACGGTCGGGAAATTGATTAGGAAAGGGTGTCTTGCATGGTTGTCTAATGTAAGAGAATTAAAGA
AGGGAAGCATAGAATTAGCGGATATTCCCATTGTAAGAGAATTTCCAGATGTGTTTTCAGAGGA
GTTACTTGGGCTACTCCTAATTAGGGAGATTGAAGTTTCCATTAAAACCTTTCTAGGGGTCAAC
CCTATAGCATAATCTCCTTATAGGATGACCCCCATAGAACTAGCTGAACTGAAGATCCAACTTT
AGGAATTGTTGGACAAAGGATTCATATGGCCAAACAACTTGCCTTAGGGAGCTCTGGTATTATT
TATGGCACATTTTAGCTGTGTATAGACTATCGTCAGTTGAATAAAGTGATGATAAAGAACAAAT
ACCCATTACCATAAATAGACGACTTGTTTGATCAGTTGAAGGGTGCGAGGGTGTTTTCTAAGAT
AGATTTGAGGCCGGGGTACCATTAGTTAAGAATCAAAGAACAGGACATACATAAAACTACTTTT
AGAACTCGATACGGGCATTATGAATTTTTAGTGATGCCTTTTGGGTTGACAAACACCCCAACAA
TATTTATGGACTTGATGAATCAGGTGTTTTAGCTTTATCTAGATAAATGTGTGGTGGTGTTTAT
TGATGATATATTGGTATATTCTAGTTCTTATTTAGAACACGAGCAACACTTGAGGAATGTGTTG
AAAACATTGAGGGAGAATATACTATATGCAAAGCGGGATAAATGTGACTTTTGGCTCAAGGAAG
TAATATTTTGGGGCATGTTATCTCTGTGGGAGGAATATTTATGGATCCAGGAAAAGTAGAGGTT
GTTTTGAAATGGAAGAGATTTATAAATGTGATGGAGATTTGGAGTTTCTTGGGGCTCGCAGGGT
ATTATAGGAGATTTATCGAAGGTTTTTCTACAATAGCATCACCTTTGACCAAGTTAACCTGTAA
GGAAGTAAAGTTTATTTGGTCAAAAGAATGTGTGGAGAGTTTTCAGGAGTTGAAAGAGAGACTC
ACCTCCGCCCCGATCTTGACCCTTGCTTTGGGAACAGAGGGGTTCGTGGTATACAGTAATGCTT
CGAAGAGGGGTCTAGGATGTGTGTTAATGTAGCATGGGAAAGTGATCGCCTATGCCTCTAGACA
GTTGAAGCCAAATGAAGTGAACTACCCAGTCCATGACTTTAAACTTGCAGCAGTAGTATTTGCC
CTACGACTATAGAGACATTACCTATATGGGATGCAAGTTCAGATTTTTACTGATCATAAGAGTT
TGAAATATTTAATGTCATAAAAAGAGTTAAATATTCGGAAAAGGAGATGGGTGGAATTGATAAA
GGATTACGATTGTATGATTGATTATCATTCGGGTAAGGCCAATGTGGTAGCAAATGCTTTGAGC
AGGAGGGGGAAAGTGGTGGTTGATGATTCAGGGAATAAAGAACATAAGAGTTTAATAGAGTTGA
AAAAGATGGGTTTGCGGCTAAGTGTAGGTCCAGAAGGGTCAATACTAGCTCAAGTAAAAATTTA
ATCGATGCTTCGGGATAAAGTCCTGGAAGCTCAGCTGGCGGATAAGGGAGTAGGAAAAATCAAG
GAATAGATAAATCGGGGCATAGAGATACCTTTTCAAATTTTTTCGGAAGGATTGGTGGCAATGG
GCAAACGAGTCTACTTGTTTAAAAATAAGTTACTGAAGGAAGAAATCTTGAATGAAGCTTATGA
ATTAAGCTTATGAATCTCGATTTACAACTCACCCTAGAAGCACCAAGATGTACCGAGATTTAAA
GGAATATTACTGGTGGCTGAACATAAAAAGGGAGATAGCAGAATATGTGTCAAGAAGTGGGATA
TGCCAGCAAGTGAAGATAAAGCATCAGAGGCCCGCATAGGAGTTATAACTGCTGCTAATTTCGG
AATGGAAATGGGAGAACATAACCATGGACTTTGTAATCGGATTGCCAAGGAGCAAAAAGGGTAA
TGATGCTATATGGGTGGTTGTTGATCGATTAACAAATTCAACCTTGTTCTTACCTAAAAAAATG
ACAAATCTTGTGGACAAGTAGCCAAGTTATATGTAAAGGAAGTGATTAGGCTTCATGGAGTGCC
TATATCAATCGTGTCGGACCGGGACCCAAGGTTCATCTTGAGGTTATGGCCAAGCTTGCAACAA
GCTTTAGGGACTAAGGTAAACCTGACACTTGAAGACCTTCTAAGGTCATGTGAAACCAATTAAG
ATCGTGGATCAAAGCAAAAAAGTGTTAATAAATAAAAAAGAGCCATTAGTAAGAGTACTGTGGA
GGAACTCCCAAATAAAAGAAGAGACGTGGGAGAGAGAATCAGAGATTAAAGAAAAATACCCCCA
TCTATTCCCAAAAACAAGTACGTTCCTTAAATTTCGAGGATGAAATTTTTGTTAGGGGAGGAGA
ATGTAAAACCAAGAGAAACACACACACACACACACACACATATATATATATATATATATATATA
TATATATATATATATATCATTATGGTGAGTATTATAATAATAATAGTGCAATTAAATAAAGAAG
AAGAAGAGAGTCGATAGCCCACACAAAAAGAAAAAAAGAGATTTGGAGACCTAAAAGGGAAGAA
ACAAAGAGGGGAGGACCAAACTTAAAAGGTATGAATAAATGAGGGATAGAAACAAAAAAAAAAG
AGGGTGAGAAGAAAATTGTCATCCCTTAAAGGAGGAGAGCTAATGACAGAAAAAAAAGAAAAAG
GGAGAAGAAGAGTCACTTACTGCCTCTTCATTTTCTCTTAAGAATAAACAAGGAGAACCACATG
CAATCCACCATATGAGAGGAAACTAGAAGGGTAAGGGAAGATTTAGACATCAAAAGCAAAAGAA
AGAGAAGAAGAAAGCCAAGAAGGAGCCGACAACAACAAGGGAAGAGAAGAAGAACTTAAACATT
GAGGGAGAAGGGGTTCCAAGGAGCAGAAAACACAACTAGGATAAACCTAAGAC
Conservation Information
Conserved circRNAs NA
PMCS 0.105321276
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Song et al., 2020