Detailed infomation of each circRNA
General Information | |
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CircRNA Name | BGIOSGA007099_circ_g.2 |
ID in PlantcircBase | osi_circ_003659 |
Alias | 2:3693674|3697200 |
Organism | Oryza sativa ssp. indica |
Position | chr2: 3693674-3697200 JBrowse» |
Reference genome | Oryza_indica.ASM465v1.42 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | BGIOSGA007099 |
Parent gene annotation | NA |
Parent gene strand | - |
Alternative splicing | BGIOSGA007099_circ_g.1 |
Support reads | NA |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | BGIOSGA007099-TA:9 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS |
Functional Information | |
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Coding potential | Y |
Potential coding position |
3697160-3693676(-) 3693722-3696849(-) |
Potential amino acid sequence |
MQVSELYAGEVGYLSASIRSVADARVGDTITHSSKRAECALPGYSQATPMVFCGLFPIDADQFE ELREALEKLQLNDAALKAVTRFSMQFEPESSSAMGFGFRCGFLGLLHMEIVQERLEREYNLNLI ITAPSVVYHVNLADGETVECSNPSLLPEPGKRRSIEEPYVKIDMLTPKEYIGPIMELGQERRGE FKEMNFITENRASVVYELPLAEMVGDFFDQLKSRSKGYASMEYSLIGYRESNLVKLDIQINGDP VEALSTIVHRDKEYVADEIGVLSPNQMQVSELYAGEVGYLSASIRSVADARVGDTITHSSKRAE CALPGYSQATPMVFCGLFPIDADQFEELREALEKLQLNDAALKAVTRFSMQFEPESSSAMGFGF RCGFLGLLHMEIVQERLEREYNLNLIITAPSVVYHVNLADGETVECSNPSLLPEPGKRRSIEEP YVKIDMLTPKEYIGPIMELGQERRGEFKEMNFITENRASVVYELPLAEMVGDFFDQLKSRSKGY ASMEYSLIGYRESNLVKLDIQINGDPVEALSTIVHRDKEYVADEIGVLSPNQMQVSELYAGEVG YLSASIRSVADARVGDTITHSSKRAECALPGYSQATPMVFCGLFPIDADQFEELREALEKLQLN DAALKAVTRFSMQFEPESSSAMGFGFRCGFLGLLHMEIVQERLEREYNLNLIITAPSVVYHVNL ADGETVECSNPSLLPEPGKRRSIEEPYVKIDMLTPKEYIGPIMELGQERRGEFKEMNFITENRA SVVYELPLAEMVGDFFDQLKSRSKGYASMEYSLIGYRESNLVKLDIQINGDPVEALSTIVHRDK EYVADEIGVLSPNQMQVSELYAGEVGYLSASIRSVADARVGDTITHSSKRAECALPGYSQATPM VFCGLFPIDADQFEELREALEKLQLNDAALKAVTRFSMQFEPESSSAMGFGFRCGFLGLLHMEI VQERLEREYNLNLIITAPSVVYHVNLADGETVECSNPSLLPEPGKRRSIEEPYVKIDMLTPKEY IGPIMELGQERRGEFKEMNFITENRASVVYELPLAEMVGDFFDQLKSRSKGYASMEYSLIGYRE SNLVKLDIQINGDPVEALSTIVHRDK(-) MVILWRHCQQLFIEIRNMLQMKLEYYLPIRCKLVNFTLARSVIFLRP*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Huang et al., 2021 |