Detail information of BGIOSGA007099_circ_g.2


General Information
CircRNA Name BGIOSGA007099_circ_g.2
ID in PlantcircBase osi_circ_003659
Alias 2:3693674|3697200
Organism Oryza sativa ssp. indica
Position chr2: 3693674-3697200  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA007099
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA007099_circ_g.1
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA007099-TA:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGTAAGATATGGTAACACAAAAGTTACCTCGCCAGCGTAAAGTTCACTAACTTGCATCTGATT
GGGAGATAATACTCCAATTTCATCTGCAACATATTCcttatctctatgaacaattgttgacagt
gcctccacaggatcaccattgatctgtatatccagctttactaggttactttccctgtacctgc
aaattagg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTATCTCTATGAACAATTGTTGACAGTGCCTCCACAGGATCACCATTGATCTGTATATCCAGC
TTTACTAGGTTACTTTCCCTGTACCTGCAAATTAGGCAAATATAATATGTCAGTTGATTTTACA
GAAGAAACTATTAAGCACTGGCAATCGGGTAAAACAAAAGGCAGGTAACTAGCTATGGGTTAAG
TGGTAAAGTAATAAATTTTAGTAGTCACCAAGTGTTACTCATATGCATCCCAGGTGCCAGGACA
TTCTAAGATCAAAAGAACTTAGTATCTTATTAATATCACCCATCTTAGACACAAGTTAATGTTG
TTTGGAAAGCAACCACCTCTATTCATGCTTCTTCAAATATTTAAAATGATCGTTAAAATGAGAT
ATGCCTTTTTACATAACCAACTGTTACATCATGACATTATGACCATTACAGTGTCCTGGACTTG
ATGACTAGAGAGATATTAAATTAAGAGAACAAGGGTGCAAGTACCCGATAAGTGAATATTCCAT
GCTAGCATATCCTTTACTTCGAGATTTCAGTTGATCGAAAAAATCACCAACCATCTGCAAAAAT
GGGTACAAATAAGTATCTACAGAGAATCCACCAGTACTATGCAGCAAGTCAAGTATATGCTCTG
GAAGATATGTACTTCTTGATGTTTAAGAATATACGCTAGCATGAACCAAAGAGTTGAGATTACA
CAAAATTGAGAACAAAAGAACAGCATTAGAGACATCAATAAATGAAATATGCTTACCCTAAAGG
CCTGTTTGCATTATGATGAAGGTATTAGTGACTGGTGCATATTTTATACTCCCTCTGTCCCAGT
TTATAGCGCGTGCAAATATTTTTGCTAAGACCAAGGTGCGAGCGTGGAGAGAAGTTTGTTACTG
TTGCAACCCTAATTAAGTGCATTAATTTTATCGCTTCGTTTGGACGTGGAAGAAACTTGAGGGC
CCAGGCCATCTGCATGCGTCTGCACGCTCTATGCGCAGGCTATGCTGAAACTACATCATGCATC
ATTAACAGGGCTAATCTCAGGAGAAATGGAACCGGTTTAAAGTTGCGCCTTATGTTGTGGGACA
CCAGTGAAAATATTGTGCGCCCTCTAAACTGGGACGGAGGGAGTAATCTGTACAACGTAGAAAC
CCTTCAAACGTCTAAACAATCATGTCCTCTCTATCTGAAACTCCTGTTTGCATAATGCTTTATG
TATGTTGGAGGAGTTAAGGTATGTTTTCCCCTTTTATTTGCTAGATGAAAATAGTTACAATGAG
GTGCAACATGCATGGTAATGATTTTATATAGAAAAAGGAATTACCTCTGCTAGCGGTAGCTCAT
AAACAACTGATGCCCTATTTTCTGTGATGAAGTTCATTTCCTTGAATTCACCTCTTCTCTCTTG
ACCCAGTTCCATTATTGGGCCAATATACTCTTTTGGTGTAAGCATGTCAATCTAAATAAAAAAA
AAATGCAGAGATCAAAGAAGAGAATCAGATACATGCAGAATTCAACACTCCCAATCTTAAAGAT
GACTGTAATGGACGGTGAAAGCCTGTATACAGAAGAAACAACCTTGACATATGGCTCTTCGATG
GATCTCCGTTTACCAGGTTCTGGAAGCAAGGATGGATTCGAACATTCAACCTATATTACAGCAA
TAAGTAAGCATGTCAGTACATTAACATTCCAATGCCAAATAAACAACACTGACATGTCCACTAG
TCAAACTGAACAAGTAATTGCTTGATTAACTCTATTGTAAGGAAGTCTAGTCTAGCAAAGTCGA
GCAAGTTGGTGCAAACATATGCACCCTGCAATGATTTAATTACTACATATATGCAAGTAACAAT
TGTTAATGGCTTCCTTAACTCACTTTCTCTAATGAAGTGCTCAACAACTATTTCCTTGAAGTGG
GAGAAATGGTAAGATGAAATTATGACACATTGTTCAGTGTTAATCTTGTTGACATGCTCAACAC
AACTGTAGATGATTCTTCAAAAAAAGAATACATTGATAAAGGACATATAGCATAGTTAAACCTT
GCAGGCCCTAGCAATTACTAATCCTAACAGCAGGAGATAGAGAAGTTCTTCAGGGTCATAAAGA
ACTTACAGTTTCGCCATCGGCTAGGTTGACATGGTAAACTACACTGGGTGCAGTAATTATTAAG
TTCAAGTTATACTCTCTCTCGAGCCTTTCCTGAACAAAGAGAACATTATGTTGTCGAAATTTCA
AGTCACCATAGCTGTAATATGAGATGGACTAGTGAGAGTGAAGTAGATTATAAGAACCTGCACA
ATCTCCATATGAAGAAGACCGAGAAATCCACATCTGAAGCCAAAACCCATGGCACTTGAAGATT
CTGGTTCAAACTGCATTGAAAACCTTGTTACTGCCTTTAGAAAAGCAAAGATGAGAAATGCAAT
GCACAATGCTAATTAGTCACCAATCAACATTGGCAATTTGGCATCTGCCATACCCCCTAGCTTT
GTGAAATGACTTGACAGATTTGCTTGCATTTCCCTCTACATATGATCCAAACATTCACTCGCCT
AACTCTAAATGAGAAGAAATGCATCAACTTTTCTTTCTAACTGAACTAATGTATTCATTCTTTC
CACAATCAACTTTTACTGCATATTTCAATTTTATAAAAATGAGATAAAAAATATAGAGTTTCTT
CATCAAAATCATATTGCCTTTATTTTGCCTGCATTCAATATGGAGTATCATGTTCCTCTATGAA
GTTTCTACAGATGCATTGTGATGCAGGGACAAAGGTAAGTAAGAAGATGCTTCAACTTCATATA
CTGGAAATGCAAACAAACCAAAACAGCTTGAAATATGCATTTGTGCTAATCTGGTGATCTTGTC
TCAAGATATATAGGGCAGGAATCCCACCTTTAAAGCAGCATCATTTAGTTGAAGCTTTTCCAAT
GCTTCACGTAACTCCTCAAACCTAACAGACAACCATATTTAATATGTGATCCATGTGCAGAAAA
AATAATGGAAAAAATTTCAAGGGAAAGTATAGTACTGATCCGCATCTATAGGAAACAAGCCACA
AAAAACCATTGGGGTAGCTTGGGAATATCCTGGTAAAGCACATTCTGCTCTTTTTGAAGAATGA
GTAATTGTATCACCAACCCTGGCATCTGCAACTGATCTTATGGACGCAGAAAGATAACCGACCT
GAAAAGGAATGGTCAATGATCAAACCACAAAGAATTCTTTTTTGCAAATATTGCATTACTAACA
ACATTAGCTTAATGGTGTATCAATAGCATATTCAGGAAGCCAGATCAAAATCTGGCATATACAT
AGTAGGTACCGATGTTTATATACTGAGGAAAATGGGGATCTACTTCACAAAAAAAATAAAGTGG
AATGAAGATATAGTCAAACATAAGATTTATGGTTGATGTAAGATATGGTAACACAAAAGTTACC
TCGCCAGCGTAAAGTTCACTAACTTGCATCTGATTGGGAGATAATACTCCAATTTCATCTGCAA
CATATTC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 3697160-3693676(-)
3693722-3696849(-)
Potential amino acid sequence MQVSELYAGEVGYLSASIRSVADARVGDTITHSSKRAECALPGYSQATPMVFCGLFPIDADQFE
ELREALEKLQLNDAALKAVTRFSMQFEPESSSAMGFGFRCGFLGLLHMEIVQERLEREYNLNLI
ITAPSVVYHVNLADGETVECSNPSLLPEPGKRRSIEEPYVKIDMLTPKEYIGPIMELGQERRGE
FKEMNFITENRASVVYELPLAEMVGDFFDQLKSRSKGYASMEYSLIGYRESNLVKLDIQINGDP
VEALSTIVHRDKEYVADEIGVLSPNQMQVSELYAGEVGYLSASIRSVADARVGDTITHSSKRAE
CALPGYSQATPMVFCGLFPIDADQFEELREALEKLQLNDAALKAVTRFSMQFEPESSSAMGFGF
RCGFLGLLHMEIVQERLEREYNLNLIITAPSVVYHVNLADGETVECSNPSLLPEPGKRRSIEEP
YVKIDMLTPKEYIGPIMELGQERRGEFKEMNFITENRASVVYELPLAEMVGDFFDQLKSRSKGY
ASMEYSLIGYRESNLVKLDIQINGDPVEALSTIVHRDKEYVADEIGVLSPNQMQVSELYAGEVG
YLSASIRSVADARVGDTITHSSKRAECALPGYSQATPMVFCGLFPIDADQFEELREALEKLQLN
DAALKAVTRFSMQFEPESSSAMGFGFRCGFLGLLHMEIVQERLEREYNLNLIITAPSVVYHVNL
ADGETVECSNPSLLPEPGKRRSIEEPYVKIDMLTPKEYIGPIMELGQERRGEFKEMNFITENRA
SVVYELPLAEMVGDFFDQLKSRSKGYASMEYSLIGYRESNLVKLDIQINGDPVEALSTIVHRDK
EYVADEIGVLSPNQMQVSELYAGEVGYLSASIRSVADARVGDTITHSSKRAECALPGYSQATPM
VFCGLFPIDADQFEELREALEKLQLNDAALKAVTRFSMQFEPESSSAMGFGFRCGFLGLLHMEI
VQERLEREYNLNLIITAPSVVYHVNLADGETVECSNPSLLPEPGKRRSIEEPYVKIDMLTPKEY
IGPIMELGQERRGEFKEMNFITENRASVVYELPLAEMVGDFFDQLKSRSKGYASMEYSLIGYRE
SNLVKLDIQINGDPVEALSTIVHRDK(-)
MVILWRHCQQLFIEIRNMLQMKLEYYLPIRCKLVNFTLARSVIFLRP*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021