CircRNA Name |
AT1G10390_circ_g.6 |
ID in PlantcircBase |
ath_circ_001884 |
Alias |
NA |
Organism |
Arabidpsis thaliana |
Position |
chr1: 3409033-3411889 JBrowse» |
Reference genome |
TAIR10.38 |
Type |
e-circRNA
|
Identification method |
KNIFE, PcircRNA_finder, circRNA_finder, find_circ |
Parent gene |
AT1G10390 |
Parent gene annotation |
Nuclear pore complex protein NUP98A |
Parent gene strand |
- |
Alternative splicing |
AT1G10390_circ_g.1 AT1G10390_circ_g.2 AT1G10390_circ_g.3 AT1G10390_circ_g.4 AT1G10390_circ_g.5 AT1G10390_circ_g.7 |
Support reads |
15 |
Tissues |
whole_plant |
Exon boundary |
Yes-Yes
"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
|
Splicing signals |
CT-AC
The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
|
Number of exons covered |
AT1G10390.2:7 AT1G10390.1:7 AT1G10390.3:7
|