Detail information of BGIOSGA016952_circ_g.2


General Information
CircRNA Name BGIOSGA016952_circ_g.2
ID in PlantcircBase osi_circ_014689
Alias Chr04:29425087_29426777(MH63RS2), Chr04:29467937_29469628(ZS97RS2), Chr04:29425087_29426777(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 27652144-27653835  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2, find_circ, CIRI2, CIRCexplorer2
Parent gene BGIOSGA016952
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA016952-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGAAGTTGTCACAGAACAAGATAAATCATGCTTAATAGAGGCCTTGAAATTTCATCCCAGAGGG
TATGACAAGATTGGTGTGGGAATAAGAGAAATCAAGggatttttggaatttaagaatgttaagg
tgcaatgtcaagaggataatgaacttgttctgaaagtcggtatgtctgagcattgcaagagtgg
gaagttct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGATTTTTGGAATTTAAGAATGTTAAGGTGCAATGTCAAGAGGATAATGAACTTGTTCTGAAAG
TCGGTATGTCTGAGCATTGCAAGAGTGGGAAGTTCTGGGCTACCCTACAAAATGCTTGCATCCC
AATAATGGAGTTGATTGATTGGGAGCGGAGCCGACCAGAGAGAGTATATGATAATTTCTGCTCA
TATGGCATAGACTCAGCATGGAAATTCTTTGTCGAAGTATGATACTTGCTACCCTTCATTCTGG
CTTCACTGTTTCATTCATTCCTGTGTAAAATGGTTTCAAAGTTTAATTGTTTGTGATAAATTTC
TCCTGTAGGTTTATAACATTTTCATTTTCACTTGCTTTTTCAGTCTTTAAGATCCACAACAGAT
GCTATTGGAAGGAATATCCATCGACAGCACTTACTGGTTGTGGCAGACTGCCTATCTGTGAGTG
GGCAGTTCCATGGGCTAAGCAGTCAAGGTTTAAAGCAGCAAAGGACTTGGTTATCAATCTCCTC
TCCATTTTCTGAAGCATGCTTTTCTGTGAGAAATCTTAGCTTTCTTACTGATTATTAACTATGA
GATTTCCCTTTTGAAATGTTCTGAACATCTTCTGATTTTATGGCTTTTCCTGCAGAGGCCTGCA
CACAGTTTTATAAATGCTGCAAAGCGAGATTCAGTGGACAATCTTTCTGGTACTCTAGATGCAA
TTGCCTGGGGCAAAGAACCTTGTACAGGGTCGTCAGGTCCTTTCAAGATTCTATATTCTGGGAA
GGTGTGTATTGTAACTTCCCTGCTGAATCAAGCACTACTCTTTTAGAGTAACTTTAACGTGCTC
CCAAAATGAAAAGAAAATTGAGATCTTGATCAATCACCCCCTATGAATACTCACGATGCATTAT
ACATGCACAATTTAACTCTTTGGATAGCATAAAGGTACAATACTAAATTTCTTTCCTAATGCTT
TGCCTACGAGTAATTTGCATTGAGTAAGTATTCACTGAAATAATTTGTTTTCTGGTTCTGAATA
ATTGATATAAAATGAAGTGAAGATCTTATATTATCTCTATGATGTTCATATTATTTATGCTGAG
CTGTTGATTGATGATATTCCGTTACATTAATTTTGTACAGAAATTGAATCGCAGTGTCTGCTTC
TGTGATAGATGGATGTTCAGATATTTCAAATTGGCTGCTAACATTTATTCTTTTTTGCAGTCAC
ATGAGACAAAACAAAATGAGCACATATATGACTTTCTACATAACCCTGAAGTTCAGGCTCTTGA
AAAGAATGTAATGGATACCTACAGAAAAAGGACTGAAAAAACTTCCAAGCGGAGATCAGCACTC
AATTCTGAAGGCAATGCTACCATCAATGGTGGTGCCATATCTTTTAATCAGAAGTTTCTTAATT
CTAAAGTTGGTATATGGGAGAACATCATTGACATGCGCACTTCCTTGCAAAACATGCTTCGGGA
GTATGTTATACCACTATCCATGGAATCGTGACTGATAGTTATTTTCTTTTTTTAAAAAAAAAGC
TTTATAATCCTTTGTATTTAATGTCATCTTCTACTTTCATGAAGGTACACATTAAATGAAGTTG
TCACAGAACAAGATAAATCATGCTTAATAGAGGCCTTGAAATTTCATCCCAGAGGGTATGACAA
GATTGGTGTGGGAATAAGAGAAATCAAG
Conservation Information
Conserved circRNAs osa_circ_024958
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021