Detail information of BGIOSGA012050_circ_g.1


General Information
CircRNA Name BGIOSGA012050_circ_g.1
ID in PlantcircBase osi_circ_004611
Alias 3:5635963|5636594
Organism Oryza sativa ssp. indica
Position chr3: 5635963-5636594  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA012050
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA012050-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGGAAAGATGTCTCGTTAGGGGCACTCTTAAAAACCAAGGATGGAGCCCTTCCTTTAGCTTTTG
ATGACTACGTGCTAGGCGATAAATCTGAAGAATCAGcttctccatgaagttcaacggaggcctg
gacagttctgtccctacttctccatctcggcatacatccaacaaaaacgatgatggaatatcat
atgcttac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCTCCATGAAGTTCAACGGAGGCCTGGACAGTTCTGTCCCTACTTCTCCATCTCGGCATACA
TCCAACAAAAACGATGATGGAATATCATATGCTTACAGTGTTCCAACTTCACCTAATTCATCTA
TGAACAGCTTTCTAGCCCAAGGGGCACCCCAACAAGATTCCACAAAGAATCCTTTTTCATGGCA
TCGCTATCCCTTCTTATCCCGGTTTCGCTCTAACAGTGGAGATAAGAAGGACACCTCCCATTAT
GTCAGCTCTATGGACAGTGAATACGAAGGGACTCCTGTTAGCTTGGAAAGTAGCATTGCCAATA
ACAAGTTCCATTTTTCATTCTATAAGTGGGGAGGGAAAGGTGCCGTTTTGGTATTGCCAACTAC
TGCACAGGAAAATGCTGGTGATATTGTTGGAGTAAGGAGTTTCCCTCAAGTGATTGTGCAAGGT
ATGGACCTAATTGATGAAGAAGATAGCACGTCAACTGCCACTGGAGCATCAAAGAGTCAGACTG
ATTACGAAGACTACAAATCTGGGAAAGATGTCTCGTTAGGGGCACTCTTAAAAACCAAGGATGG
AGCCCTTCCTTTAGCTTTTGATGACTACGTGCTAGGCGATAAATCTGAAGAATCAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 5636025-5636565(-)
5635973-5636345(-)
5635971-5635970(+)
Potential amino acid sequence MPRWRSRDRTVQASVELHGEADSSDLSPST*(-)
MEKLILQIYRLARSHQKLKEGLHPWFLRVPLTRHLSQICSLRNQSDSLMLQWQLTCYLLHQLGP
YLAQSLEGNSLLQQYHQHFPVQ*(-)
MKFNGGLDSSVPTSPSRHTSNKNDDGISYAYSVPTSPNSSMNSFLAQGAPQQDSTKNPFSWHRY
PFLSRFRSNSGDKKDTSHYVSSMDSEYEGTPVSLESSIANNKFHFSFYKWGGKGAVLVLPTTAQ
ENAGDIVGVRSFPQVIVQGMDLIDEEDSTSTATGASKSQTDYEDYKSGKDVSLGALLKTKDGAL
PLAFDDYVLGDKSEESASP*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021