Detail information of BGIOSGA014744_circ_g.1


General Information
CircRNA Name BGIOSGA014744_circ_g.1
ID in PlantcircBase osi_circ_014560
Alias Chr04:26046150_26047238(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 24169410-24170498  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA014744
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA014744-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTTTAGAAGCATAAGCATTACCTTCCAAACATAGTTCAGGTTGAAGCCTGAATCTAAAAGCAC
TGCGCCAATACAAGATTCAACAATATCACCAAGAGCccatgatacacctttttattgcttttct
ctgttgcttcactaggcagacgaccactctgtgttgccaacttgggttgattgttccttccatt
attgacat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCATGATACACCTTTTTATTGCTTTTCTCTGTTGCTTCACTAGGCAGACGACCACTCTGTGTTG
CCAACTTGGGTTGATTGTTCCTTCCATTATTGACATCATGTTTGCCAGACCCTGCTATAATTTG
ATTGTGGAATTTAGAACTCCTAGTGAAAGATGTTTCTGTATTTTGAAAAGGTATGTTCTCTTCA
TGTATATGTGGACTCTTCATTTTTACAGATATGTCAGCCTCAACATCGATTGGATCTTCATTAT
ATCCTATCAGTTCTGATTCCCTCTTCCTGGCAACAATCAAAATCTCCTCAAGGGACTTGTTTCT
GTGCTTATAACCGTAATTCTGCATAATTTACAAAAGGACCAGTAAGCTGGTTGTGGCATGCATT
TTAAGAAACAGGGTATTTGAATGGACAGATTAACACAAACAACAAAGAGATATTGTGTAAATTT
GGCAAGTTGGACTGGAAAGCAATGAACACAATGAATAGTTTCTTTCCAATCTATTAAATCAATG
ATCTTTCACATTCATGTCAACAATTAAGCAAAATAAAATAGATCGTTGTAATGGCTGAGGTTCT
GATACTCACATTCTAATAATAAAATAAATAGTGTTCCCGCAAAAAAGTAAAGCAAATGGAAAAA
TCACAAAAAATATATCTTCTGTATAGACTACAGAGAGTGCTTCGTGCAGCTAACTGAAAGCAAA
GCATTCGTGTTGCATGGTAATTGCAGAAGAAAATGCTAAGGGAACAAAATTGTACCTTCAGTTT
AGAAAGTGTTTCTTGTGCAGCAAACTTTCTAGCGGCTTTTGAATTCCGATTTGCTGCAGTACAA
ATGATAATTTTGCTCTTTATGTTAACTTCTACTTTGACATGGTACTCTCCATCAGCTTTCATAG
GTTTCGGAAGGCCTAACTCAAATCCATGACACTGACAAAGCTCTCGAAGTTCTCTCATCGGATT
AGTGTGCATGTTGGCGAAGGTCAATACTGGCTTTAGAAGCATAAGCATTACCTTCCAAACATAG
TTCAGGTTGAAGCCTGAATCTAAAAGCACTGCGCCAATACAAGATTCAACAATATCACCAAGAG
C
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021