Detail information of Zm00001d039173_circ_g.2


General Information
CircRNA Name Zm00001d039173_circ_g.2
ID in PlantcircBase zma_circ_005366
Alias root_test_circ_002890
Organism Zea mays
Position chr6: 171778890-171779343  JBrowse»
Reference genome AGPv4.38
Type   e-circRNA
Identification method find_circ
Parent gene Zm00001d039173
Parent gene annotation hypersensitive induced reaction3
Parent gene strand +
Alternative splicing Zm00001d039173_circ_g.1
Support reads NA
Tissues root
Exon boundary   No-No
Splicing signals   GT-CA
Number of exons covered Zm00001d039173_T003:3
Zm00001d039173_T007:3
Zm00001d039173_T006:3
Zm00001d039173_T008:3
Zm00001d039173_T002:3
Zm00001d039173_T001:3
Zm00001d039173_T004:3
Zm00001d039173_T005:3
Zm00001d039173_T009:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGTGATCAGAGCAAGCGTTCCCAAGCTCCATTTGGACGATGCTTTCGAGCAGAAGGACGAGAT
CGCAAGGGCGGTGGAGGAAGAGCTTGAGAAGGCCATggatgccactgcatgccttggttcgccg
gcaagcgtgtagctgggcaactcacactcaggctgcagcaactggatgtgcgctgtgagacaaa
aacaaagg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGATGCCACTGCATGCCTTGGTTCGCCGGCAAGCGTGTAGCTGGGCAACTCACACTCAGGCTGC
AGCAACTGGATGTGCGCTGTGAGACAAAAACAAAGGTATGTATGTTCTGCTTAGCTTGTGAAAA
TTAATGGATTGTGGTGGCAGCTTCTAACACCTGGATTTGTGCAGGACAATGTTTTCGTGAATGT
GGTGGCATCTATTCAGTACCGCGCTCTGGCTGACAAAGCAAGTGACGCTTTCTACAAACTGAGC
AACACAAGGTCCCAGATCCAAGCCTACGTCTTTGACGGTACGTAGCAGTTTGTTTCTTGCTAGT
TTGAGTGTTCATGGTTGTGACTATGTCGTCCGTACAGTGATCAGAGCAAGCGTTCCCAAGCTCC
ATTTGGACGATGCTTTCGAGCAGAAGGACGAGATCGCAAGGGCGGTGGAGGAAGAGCTTGAGAA
GGCCAT
Conservation Information
Conserved circRNAs NA
PMCS 0.022760646
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tang et al., 2018