Detail information of BGIOSGA009784_circ_g.2


General Information
CircRNA Name BGIOSGA009784_circ_g.2
ID in PlantcircBase osi_circ_013672
Alias Chr03:34078458_34083204(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr3: 35424420-35429154  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA009784
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA009784_circ_g.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-CA
Number of exons covered BGIOSGA009784-TA:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAACTTGTGTACTCTGATTGCCAAGTTCCACATCATGAGAGTCACCCTCAATTTCCTGGGCCAT
GCCACTTGACCCTTGGCTTTCACCTTGCCCTTCCTCcctcattattttcatctgacatggaagt
atcacctatgacttcttctgggtcttcttcctcttcatccatgtcatcttcccttccatttgtt
ggtgaatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTCATTATTTTCATCTGACATGGAAGTATCACCTATGACTTCTTCTGGGTCTTCTTCCTCTTC
ATCCATGTCATCTTCCCTTCCATTTGTTGGTGAATTATCTATATCCTCGACATCTGTTTCATAC
TCTGATTCCTCACTTTCACTCTTGGAATACTCATTCACCTGATGCTTGGGTACACTGGGAGAAG
GAACAGCTTTCCCTACATTTGCCTGAAATCATGAACAAAAAAATATGGATAAATAGCAACAGGT
TCATCAAAATAAGATGACTCTGTCACTGACCTTCTTTGCATTAGTTACGTGTCTCTTAGAAAGT
GCTTCAGCCTCCAAGCTATCCTCAAAATGTGCATGGCCTGGGCCTCGGCGCTGATTATAACCAA
CACCAGGTGCCTCATCCTACAACCATCACAGAATTATGAATGCTTTTCCACCAAAATTTGCAGT
TCCACACAACTTTATAGTGAATTGGAAGGCTGAGACTAGTTTTATGAAGGGTAATGTGGTGGTG
TCTTTAAATTAGTTAAGAAAAACCCTAATACCATGTTTCAACCCATCTACAGACGCACACCCAA
CACTGACTACCTAGCTGTTTGCTGATTCCCATGCAGTTAGTTGACGAAATGGCCGTGGCTGTGG
GAGGGCACAAAGGCAACCTCTGCAATTGGAAGCAATAGTTTTGTTGCAGCCGTTGATCGAATAT
GCTCATGGCCATGTAGTGAATATGAAATTTATATCTCAAACAGAAATTTGGCATGTCTATCTCG
TTAAATGCAAGAGAGTTACTCAAACCTGGATGGCCAAATAAGTATACTTCAATATTGGTCACAG
TGGAGAAAGAAAGAAGTATATCGGTCTACGTAGACAACATCATCTCTCACACGAGGGCCTGAGG
TCAAGACCATTGACAGAAAAGCACGAGGGATTAGACATAATGGGCATAAATTTTAGGTTTTAGG
CCATAACTGGTGGGTATCGGATCCTACGTTACTAATTTTCCCCAAGTAATAACTAAATAACCAA
TTGTATTAACTTTACAGATTTGTGCAAAATTATGGTGGAACAGGGTGGGAGCACCCTAATTGCA
GCGTTACCTCTTAAATGAGCAAACTCAATACTAAGGCAAGAAACCAAACCTCCTCTAATGCATC
TTCCAGAAAACCTGGGGTAAGCTTCCGCCTTTTCCTAAGAGGCTGACTGTATTTGCGCTTCACC
TGTTCTCTTTTTCGTTGAAGACTTGAACTAGCTCGAATATTTTCTCCTTCAGCCTGTGTAAATC
ATATATCAGTATAAAGGACAAGTCATTCCATCAAAAAAAAAATTCAAGTCAAAAGATACAATTT
AAACATAATGATAAAAGCAATATCACGATGGTTTGCATGTGTTTTCCTGTTCGGCTGCTTGTAA
CGCTGCTGTGCTGCAACAGCCGGAAGAAACAACACATTGAGCTTGTTGGCTGCACCACAGTGAA
AATAATGGCAGCCGAACAGAGCCAATGAATGAAACAGTGATAAAATCCCAACATGGTATATAAT
ATTTAGGCCACAAAAATGGGCCATGAATTATAGTTGTGTAGCCTAAAGAAACCTACCTGTACAG
AACTTTTCTTTTGAATATCAGGTTGGAGCAACATTTTCAGAGCAAATCAAATAATTAGAATAAC
TGGTGATTATTGCTACAAATCATGTACCTGATGTTTATGGAATTCCTAAAGATTACAGCCAACT
ATTGAAAACAACTAATGGACAACAGATATCAGCTTAGTACCAGTTAAGAAGGTAAACTTACAGG
AACATAAATCAGATACATGATATTGAGGTACTGTATATATATAAGAGAACTTTTTATTACCTTT
TCTCTTTCTTCCTTCACTTTCTCGGGATCATTTTCATCAATCCATGTTTGCATCTTGATTGTTT
TCTTGTTTTGAGAATCAACAAGAGCAGTTAATAAGCGATGGGATCGTGAGGACAGTGAAGAAGG
CATAAACCTCATCTTCTGTAGAAGCCTTCCTTGTGATTGCATAAGCCCCTGAGAAAAAGTCAGT
TGTGAGTTTATGAACATGGTGATGATCAATGGATAAAAGAGGCAGGGGAAGAGATTGTATAATT
GCCTTTCCATTCCTCAGAAACAGGTTGGAATTATCATGATTTGAGTCATTTACAGATATATCAA
GAACTTCATTGCCAATCAGCAGTTGTATGCTTCCATCTTTCCACTTTACAAAACGTGCATTGCT
TTCACGCTGCAAGAAACAACGCTTAAAGATTTAATAGTAATTTGGAAGAATAGCAGTCATGAAG
TACAGCTTAAACAGAGCACCAATGACATGCAAGACCCTTGATATCTAATCCTCATGTACAAACT
TGAATGATATAACACAAACATGCTAAGCAAAGTCACAAAACTGTTTTCTCTATCAGATATATAT
TCCATAGTAAAAACGAAGAAAATGTCATAGTGAAAAGGTGCAGAAAACAGTGAGTGCAATACAC
TGACAATGTGACAAGGTTCCTAAGGAAGAAGAAACTACAAAACATGGCACAACAAATATGGCAT
GAAATTTTGACTCACAGATTCGGTGCCATCAGCGTTCTTAACGATTTTCCAGCGGACAATATTA
TCCTCCAAGCGTATCTTTTTCCTGCTCCCAGATTCATCTGTCAAAGCATCCTCCTCCACATATG
TTTCAGGATCAAAAGGTTTTGGATTAACCCCCATAATATTTGAAACCTTGATCACATTCATCTA
AAAAAGAAACCCAATCAGAAAGAAAATTCTATTTGTACAAGCCTACAAGGTGCTGAAAAAAAAA
TCACGAGCTTATAAAACAGGTATTATTGCAAACTATGAAAACCTTTGGACAGAGAACTATGAGA
TGATATCGGTTAGACATTATTGTTTCAACAGCGAGAAGCACACTGTCAAAATTTTGATCTTTGA
TCAAATAGTTCCTCCATTTTCAAATAATTGACACTCTTGACAAAAACAACCATACCAAGGAAAT
TGTACTTTTAATCTGTAGTTACAAGAATAGCTCTTCAGTAGTATCTGGCGCATGAATAACAAGG
TGGAAAAGAAAGGGCCATGCATAGAAGTATTTGGGGAAATTCGTCTTGGGAAGCATGAAGTGCC
AAGTATTTGAAATCAAGAAGACTGATTAAAAGTGCCAATTATTCAAAAATGAAGGGACTATCTT
CATAAATATGCATAGATTGGCCACAAATATGGTAGATTAATGTAGTTAGAAATGTTAAGTTGGT
AGCAAAATGCACAGTAATAATAAAAGATATAGTTCACTGCTACATGCGTCCTATATTACAGAAC
TCACTCTGTCAGGTTGACCAGGTGGCAGCATACGTGGAACCACCAAATTCAGCGGAGGACCAAG
TGGCTTATCTTTCAGTTCATGTTCAATATTTTCATCCGGTTCATAATGCTTATCTTCATCAACC
ATGTCCTCTGGAAGTAATTCCTCATAGGGGCCTTCATCATTCATAAGTGATTCCTGTGAATGCA
CAGGATTGATTGGCTATGTTAAGTGATCCCCAAGGGCTAAAAACACATATGGAAACAGTGGAAT
AAATTTTCCAGGTGATAAAAGATAAGTAAGAACATAGATATACCGCCTAGCCATCAAAAAGAAT
AATCATGTAGAAAAAGAAGTACCAGACCAGCTCAAACAACTTGTACTTACCAGAAAGGAAATCA
AATGAGTTTGTAATTTTCCTTCCTTCTTCTAGTGTACAATGTACAAAGTAGAAACAAAAAAGAA
ACGCTTCTTTTATTAAAAAAATGATGATTTAGGATGGCTTCTATCGAACTTTTAGAACTTATAT
GCTACAATATCTCATTGAATTTTATTTTGGACTACAGGATTGAATCAATTGATACCTCTGGGCT
TTTCATGAAAAATGCTTTCATGATCTTGTAATTTACTGACTTTATGCTACAATACAAACTAGTG
GACAAATTTGTGTTTTTTCAATACTGTGCGGATGTTCAAAAGGTGATTAGTTTGTCACTGGATG
GTGTAACACCTTTATGTCATCTTTAAATTGTATGCCATGGCACATAAAACCAGTGATTCGGAAA
TCATGTATTGCCGACACCCCAATATCATCTAAATACACATAAAAGTACACAAAAACTGACATGG
ATAGAACAAAAAGTTATGCACAGAATTTATAAGTTGAGTTAAGAAATGAGTTCATTTGTTGTCT
CACATGGGCATGTTTATTGTCATCTCGAGAACCATATGGAGCAAGCCCATCCTCATCGTTATCA
TCAAAAGCATCATGGAGAACTTCATGGTCTTCTTCGTTCTCTGTTGACCTGCCATAGGATTACA
TGTAAAGTTTTGCTGCCTTGCTAGCAGTGAAGGTTGGAAAGGGAGAATAGTTAAGACACTGGAT
AAAATAGGTGAATTTTGTTGTCAGCAGAAGATGATTATCACCAGGGTAGACAACTCGAAAATGA
CAGATGTTAAGCTTGCATATTATAATCTATAATAGAGAAAGCATAATAGTTGACATCAGACCCT
CAGATTAAGAGGCAGCAAAGAGCAAACCTTGTTTCGCTGGTTATTGTTCTCTTGACATGACCTC
CCTCTGCAGTATTCACGCCTTTCATGTGAACTTGTGTACTCTGATTGCCAAGTTCCACATCATG
AGAGTCACCCTCAATTTCCTGGGCCATGCCACTTGACCCTTGGCTTTCACCTTGCCCTTCCTC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021