Detail information of BGIOSGA013616_circ_g.1


General Information
CircRNA Name BGIOSGA013616_circ_g.1
ID in PlantcircBase osi_circ_013683
Alias Chr03:34422488_34423800(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr3: 35766776-35768089  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA013616
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA013616_circ_g.2 BGIOSGA013616_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   Yes-No
Splicing signals   AC-AA
Number of exons covered BGIOSGA013616-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGATTCCCATGTTCTCGATTAATGTGCTAACGCGGTTTACAATCAAGCCCTCATCCTATTTACA
TCAGAGATCAGACTACCTTCATTTTGATGGTCTTTAggtaataatctgaattgcagaatcctat
gtctgtaataatcaatgtttttatttatgctatcttgtctatggaacatttctttgtactgatg
gtattttg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTAATAATCTGAATTGCAGAATCCTATGTCTGTAATAATCAATGTTTTTATTTATGCTATCTT
GTCTATGGAACATTTCTTTGTACTGATGGTATTTTGAGAATTTTACATGCTTGGTTCTAATTTC
TAAGAATGTATCATATCATTAGGAGTTTGGTACCAACTTGTCAGATATAATCCACTGCTTATGT
ATTTTTCTTCAAACATCACAATGGATCGTAGGAGGTTACGGAGTAAAATAATGGGACTGAAATC
TATGCTCATGTATACTGTATGCTGATAAATAATTAATTTAAATTGTCATGGTAGTTTTTATTCC
TAGATACCTTTCCTGTTTAAAGCTCATATGCATAGAAAGTGGTATGATGGATGGGTCGATTGCG
TCAATATGACTTGGACAAGGTTTGGAAGATAAAACGATAGTTTGCCTACATGACAATGATGTAA
CACATCTGTTCGGGAAGTTGGGGTTATGTTCCTATCGATTGAGGCGCGTGTGCAAGCACCCAGA
AAGAAGTTTTGCTTAAAAAAAATGTAAAAGGGGAACAATCTTCAATGGCCGTGCGAGCAATCAT
CATTAATAAACCTCTGGTTGAATTAATCATGACATTTTGAATAACATGTCTATTGGAGCCAGCC
TTGTAAATTCTAGCGAGTTCAAATTAATTAAATCAATACTAGAGAATAAATAGTAGTAAATAAG
ATTAGCACGGGGTATCTACTACACAACATCAACTACATTACTTCTTAATTTTTCTTCGAAATCT
ATTCTGTAGCATTTTCTGACCTGTAGGTTATCTGTCCGACCAGTCTCTTTAGTAATGTAAGCAT
GACATTTGGCAGGCTTTTACCGTGATGTCTTTTGGCCAAAGTTTGCATCGTGTAAACTTAACTT
GCCAACGATAAGGACAATCACAGTGCACTATGCAGACATTTGAGTCTATTGCAAATTATCTGTA
ATGCTTCTTGGTTCTCCTGTTTTGAAACTTTCAAAGAGAGTGAACATACTACCGTTTATATGTA
TTTTATAACTGTGATAGATATCAGAAGAGACCATATTTCACATATTCATAAGCAGTGAGAATGA
AATTAGTTCACTTGATTTATTTTGGAAGAACCATAAAAGGCAACAGTTGATGTTGTCAAGTTTT
GGTATTTTTCACATCTATTTTGTTCTGTGGGACTACTTCTGCCAGATTAAATTCTGCAAACCAG
ATTCCCATGTTCTCGATTAATGTGCTAACGCGGTTTACAATCAAGCCCTCATCCTATTTACATC
AGAGATCAGACTACCTTCATTTTGATGGTCTTTA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021