Detail information of Zm00001d053862_circ_g.2


General Information
CircRNA Name Zm00001d053862_circ_g.2
ID in PlantcircBase zma_circ_001842
Alias circ2315
Organism Zea mays
Position chr4: 242515491-242518073  JBrowse»
Reference genome AGPv4.38
Type   ei-circRNA
Identification method CIRCexplor2
Parent gene Zm00001d053861
Parent gene annotation Putative translation elongation factor family protein
Parent gene strand +
Alternative splicing NA
Support reads 3
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered NA:0
Zm00001d053861_T001:5
Zm00001d053861_T007:5
Zm00001d053861_T002:5
Zm00001d053861_T005:5
Zm00001d053861_T004:5
Zm00001d053861_T006:5
Zm00001d053861_T003:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTCTATTTTCAGGAAAGGCTTGAGAGGGAATACAACTTGAACTTAATAATTACTGCACCAAGC
GTGGTATACCGTGTGAACTGTGCTGATGGTGAAACTggaatatgttgctgaagaaattggtgta
ctatccccaaatcagatgcaagtttctgaactatatgctggcgaggtaacttttatgttgtgat
gtcttacg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGAATATGTTGCTGAAGAAATTGGTGTACTATCCCCAAATCAGATGCAAGTTTCTGAACTATAT
GCTGGCGAGGTAACTTTTATGTTGTGATGTCTTACGTCAATTATAACTCTTTGAAGAAGATAAT
TATTTTTCAGCTGTCTAATTTCATTTCCTCAAAGATATGGTTATATTGTCTATTCGGCTACTTT
ATCCAGCTATTTTTCTCAAACATATTATTTTCTAGTTTTGTTACCTATGATTCCTCATAAAAAA
CACAGTTACCATGTATTAACCATACCAGATTAGAAAATTGATTGTTGCAGTCGGAACAATTTAA
CCAGGATTTCGTAAACTTATATCTGTATATAATTATCAGCAATCTCCGCACAAGGTCTAGTTCA
GAAGTTTTTCTTCACTTTTCATCGTGCGTTCATCTAAAACAATGTCTCTTTGTATCTGATCATT
TTTCCACGCTTTGACAGGTTGGTTATCTCTCTGCTTCTATAAGATCAGTAGCAGATGCCAGGGT
TGGTGATACTATTACACATTATTCAAAAAAAGCACATCATGCTTTACCAGGATATTCTGAAGCC
ACTCCAATGGTTTTTTGTGGCTTGTTCCCTATAGATGCTGATCAGTACTGTATCTTCCCTTTAT
AGAGTTCTGTTTTTTTTCTGTTACTATATAGTTATATGAAACATTGTATTTGCCAATAGGTTTG
AGGAGTTGCGGGAAGCGCTGGAAAAACTTCAGCTAAATGATGCTGCCCTAAAGGTGGGGTTTCC
TGGCCTACCTATCCATGCATCAAGATTCTTACATACATACTGGCGTTGGCACAAGCTCAAATAT
CATGAGATCTTTTTTCTCGAACGACGCAGGAGAGCTGTGTGTCATTTCATTAAGAAAGAAAGAT
AACAGTACATCACATCAGGGGCGGAGTCATCGCTCGGCGAGCCAGGGCACCTGCCCGGGCTTCC
TCCGTGTGCGATCCACTTTTAACGTGAAACATTAAAAAAATGGGGCAGAATGGAGGCCCACGTA
ATGCAATACTTAAAAATGTAAAATCCTGATTGCAATTGTTTGTAAATCCATCTGGCCACAACGG
CCCATGAATCAACTAGTACACATCACGTAGGCTAGCTTGGACCTTGATGGACACATGCTGCGCA
AGGAGTATTCCTTGTTGTGCAACACTGCAAGTCTGCAACGATCCATTTCTCTGTTTGACTGTTT
TCGTGGCGACGCTCTCGATTCTACCCTGTTTCCGTGGCGATCTCCCAATTCCATCTAAACGCGC
AAAGCTAGGAGGCGATGTTTAATTGCGGCTAGACTTTGCTTTTGTTTCTATTAAACATCAATCG
GTAATATTTTTTAATTCCTCTTAATTTTTTAATCTTTGAATATTTTAGACTATTTGTATTGAAC
CGTATTTTGAATGCAAACTATCACAATTATCAGCTTTGCTTATTTATTTTAAATAATTAATGTG
TGTGCTAGCCGTGCTTAGGCTTATGCCTCGCCCAGTCTCTAGAAAATTCCTAGCTCTGCCACTG
CATCACATGAGGGGAGGCATGTGGACTTCCCCTTACCACACCAACTTATAGCTTACTCTGGCTT
TATCCTAATGAAACTTCTCTAATTTGGACATTTTTTTAAAAAAAATCAACATCTAATATATCAA
CTTGGTTTCATTAAATTTTCCATGAAATATGCCTTGATTGTGCATTTAATTAAACTTATAGATG
TTGTTTTTTTAAAAAAAAAACTTGGTCAAAGTTAGAAGTTTGACTTAGGACAGATGGATAGTGC
TAAAGTGAACTATAATTTGGAACTGAGAGGGTATGGTAAACCCAAAAACGGTTCCACTAACAAC
TGATTAAACCATCTCTCGTATCTCTTTGGTTGGGATTTCAGATTCTTACAGTAAATCTGACTCA
GAACGCTGAACCAAAGAGTCCATAAGATAATTGTACCCAATATCTAAAAATAACATAGAATCGA
CAAACTCACTGTCTTCTGATGGTTTACTAATTCTTGTACTAAAATATGAACAATAATGCTGATC
AATAAATTAAAATTCAGTACCTTCAGTTTTGGATATCAGATGAATGTTCCATTCTAGCCGCCAA
GAAACACATCAGTACTTCGTCTCATTTTACAAAAAAAAACAGTAAAAGCAATGCCATTAAAGCC
ATACTTAATAATGACTGGTACAAAGTGTATTTAATAACAAAAACATGATGCATCTGTTCTCATT
TGGATTCTGTAATATTGGTTATTCTTTATGCATTGGTATTTTGTATGATACTTCATTTTCTCTA
AATCCATGCCATTAATGCAGTTTGAACCAGAATCTTCTAGTGCCATGGGGTTTGGCTTCAGATG
TGGGTTCCTTGGTCTTCTCCATATGGAAATAGTTCAGGTTCTTACAATCTACTTGGTTCATGGC
AGTAGCTCATAATAAAACCACTATGGCTTGACATTTCTACAACATAGCTTTTTTCTATTTTCAG
GAAAGGCTTGAGAGGGAATACAACTTGAACTTAATAATTACTGCACCAAGCGTGGTATACCGTG
TGAACTGTGCTGATGGTGAAACT
Conservation Information
Conserved circRNAs NA
PMCS 0.053543538
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b