Detail information of BGIOSGA033172_circ_g.4


General Information
CircRNA Name BGIOSGA033172_circ_g.4
ID in PlantcircBase osi_circ_008546
Alias Chr10:20387380_20387921(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 17415328-17415869  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA033172
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA033172_circ_g.5 BGIOSGA033172_circ_g.6
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA033172-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAAATTGCAGAGGAACAGTTTTGAACAGTTCTGTATTAACTATGCTAATGAAAGGCTCCAACAA
CATTTCAATCGCCATTTGTTTAAGCTTGAACAAGAGgcggcagaaacggtcgcaagacttcttg
gctgcagtattgaagatctcaatttagctttgtcgaagaggcacatgaaagttaataatgaaaa
tattgtac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCGGCAGAAACGGTCGCAAGACTTCTTGGCTGCAGTATTGAAGATCTCAATTTAGCTTTGTCGA
AGAGGCACATGAAAGTTAATAATGAAAATATTGTACAGAAACTCACCCTTTCACAGGTTAGTGA
GTTTTGTTCTTAACTAAATGCAAGGTAGCAACAACAGCCATGAAAGTATTGTTAAATTCACAGT
TCTGCACCCACCTCTTTGAATATTGCAGGCAATCGACACAAGAGATGCGTTGGCCAAGTCACTC
TATGCCAGTTTGTTTGAGTGGCTTGTTGAACAAATTAACAAGTCTCTTTCAGTTGGCAAGCGTC
GAACTGGGAGATCAATCAGCATTCTTGATATCTATGGCTTTGAATCATTCGATGTAATGTACTT
CCATTTGACATGCTGTCATCATATTTTAATTGGCAAATGGTTTCTCATGTCATAACACAAAATT
GCAGAGGAACAGTTTTGAACAGTTCTGTATTAACTATGCTAATGAAAGGCTCCAACAACATTTC
AATCGCCATTTGTTTAAGCTTGAACAAGAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021