Detail information of BGIOSGA017050_circ_g.3


General Information
CircRNA Name BGIOSGA017050_circ_g.3
ID in PlantcircBase osi_circ_014736
Alias Chr04:30987721_30990880(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 29143018-29146176  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA017050
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA017050_circ_g.1 BGIOSGA017050_circ_g.2 BGIOSGA017050_circ_g.4
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA017050-TA:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACAAACGACTCTGCAGACGCTCAGGTTGATCTGTTTGCTGATGCAGATTTCCAATCAGCAATA
CCAAGTACAGAAACAGCTGCGGGTTCAGATGTCCAGgaaagagggaggtcaatttgaaggtgct
caaggttccagagctcgaacagaaggtgcgattgcgatatcacctttatcttaactctgtgatt
tttgcaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAAAGAGGGAGGTCAATTTGAAGGTGCTCAAGGTTCCAGAGCTCGAACAGAAGGTGCGATTGCG
ATATCACCTTTATCTTAACTCTGTGATTTTTGCAATAGAGTTGTAACAGCTGGATTGGTTCGTA
TGATGGGTGTGGGAGCTTGGGTTTTGCATAATCATGTGCTTTTGATATATTTGTTGTCTGACCC
CATTACACGCTGTTAGAATTCATGTAATCATGTCATAGTAGTACTTTAAGGAAATGAATTTCAG
GAGTACCAAAATTAAGTCTGCAATGTGTTTACTATTTAGGACTTGAGGTAAACCAGAGATCTCA
AGTGCTTTCAATTGAAGTATCTGTATTGCCAAATTTGTGCCGTTGAAGGCTACTGTCTGGAGCT
GATGCGTGGATATATTGAGTTCATTGTACATTTTGTAGCACGCCTTGATAGTTGATAGTCATGT
TGCTTTGACAATCATGTATCTTGTCCGTGGTGTAGATCATGGTTGTAAGGGTTTTCGTCTGTAA
TAGTACATTCACCCTTATGGTGCATGTTTGGTTATTCTACTGTGGGAGTATATTACAGATATGT
ATATTTCTTATTAACTTCCACAGCAAAAAAATATAGATGTATATTTTTGTTCTTAGCTTTGAAT
TTTACCTTCGATTCTTTTTCTTATGTAGTAAACAATATTTCTTTCCTTTAAAATTTCAGGTACT
TGATGCAACAAGCGATGAACCTTGGGGCCCTCATGGTACTACTCTTTCAGAGCTATCACATGCC
ACCAAGAAGTTGTAAGTTACAATCTCTTATTAACTAGGTGAAACCCCGCGCGTTGCTGCGGGAT
TTTAGTATGATAGCAATAAGTAGAAATAATGTGTAAGATAGCTAGACGACATAAGCTTACATAA
TTTGATATGGTTTATGATAATTTAAATAGTATTTAAAATGATGGAGAGGTATATTTAAATATTA
TGTGAATTATGTGAGATGATGATTTAACATGTTTGCATTTTAAAAGTCAAAAAATTAATAAATT
ATAGAATTATAGATAATATAGCATGCTTGCATGATGTTTAAGATGTAATAATTATTAGTGGATG
ATGTGACATCTTTGTATGTTGAGCTTTAGGATTTAGTGGGTTGTAACTTTATAGTAAGATAGGA
TAGGATATGTATTTTCCCCTTGTTTTTTATGCTGAAATGGTGCTTTCAAATTTTGTAGCGCTGA
ATGTCAGATGGTAATGAGTGTCCTCTGGACTAGGCTGTCTGAGCGAGGCTCGAAATGGCGTCAC
GTGTATAAGGTTTAACTCTTGACCATTTTGTATTTTCTTTGTCAAGTACTGGGGCTTTGTACTA
TGAGTTCTACATTGGTCACTATGCCAATACCAATGGTCAAAGTGAACAGCAAACCTTGGTATAT
GCATGGTTTTGTATCAGCAATGTAACTAAGGCATATAACTATTAATGTCCAGGCTTTGACAATT
ATTGAGTACTTAATAGCCAATGGTTCTGAGCGGGCAGTTGATGACATTCTTGATCACTATTCAA
AGATCTCGGTATGTCTTGTTTATGCTTTTGTTTCTGATATATAGTATTTCTTTTCTCTTTTTTG
AAGTTTATGTCATTAAAAACTTTGTTCTCTGTGCTATATTTGTCAAGGTTCTTTCAAGTTTTGA
ATATGTGGAACCTAATGGAAAAGATGCTGGAATAAATGTGAGAAAGAAAGTCGAAACTATATTG
GGACTCATAAATGACAAGGAGAAAATAAAGTCTGTAAGAGAGAAAGCCGCCAGTAATCGTGACA
AGTGAGTTCTTAAGGAAAAGAATAAGTTGTGTTATACTATCTTTTTTCTGGCTGTTTATTCATC
CTGTACAACTCCAATTATTAACATATGTTTGTTGTGGATGAAGGTATGTTGGGCTATCATCGAC
AGGGATAACATATAAGTCAAGCTCTGCTTCATTTGGTAGCAACTATAGTTCTGGTGAACGTTAT
GGGAGTTTTAGTGGTACAAGGGAAGGTGATTCATACGGTGACAGTTATAGGGATAAAGAACCTG
TTAAATCCTCTCCAAGTTATACTGGCAGCCAGAAATCTGGCAGCAGGATAAAAAAGGATGTGAA
TAGAAGGTGCTTCAAGATTCCTTTACATTTTCCATACATATAATAGCAGCTGCTGATATTTATA
GTTTAGCCTCTCATTAAAAAATTAAATTGGCTAACCAGTACGATGGTTGTATGGTAGCTGGTAA
ATATGTTGGTGGGTGGTATAATAGCTGCATCACTTTTATCCCAAATGTGGAAATAAAATAAGGT
TTTGTGGTACTACAATATTACAATTTATGTAGTAGTGCTGAACTGTGAGCCCTTTTGGAGGATG
ATAAATGAACAGTAACATTCCTGGACTCCTAGCATCAGGCTTACTTTGTATTACTCTTCCTATT
CTCCATCCCACCTGAGGTTGTATCTGTTTGAATTACCAGGAATGAGGATTCACCGAGCTCCTTG
AAGTCTAATGCAAAAGGCAATGAGGACGATTTTGATGATTTTGATCCTCGTGGATCTTCTTCAA
ATGGTAAAGTATTTTATTATGCTATTTCTTTGCCAGGATATTTGTTTTTAACTGTACTACTGAA
TGCATGTTCCAGTCTTGGCATGAAAATATTTCAAAACTGTCACTTTTTCAAGCATTTCACCCCC
TCAATTCTGCATTTACATCTTGCAAATGTTGCGCTTATATTATTATCTTCTGCCCAACTATAAT
TGGAAGGTCACCAGGTGAATGACCTCTTGCTGGAAATATCAAACAAATATATCCTGATTATTAT
AACTATTTGGCTGAAGTGAACAAGTATGCAGGTTTTTTTTTTCCTTTTATCGTGAAAAGTAGTC
AGTGTTATATGATACATTTTCCAAACATGAAGATAATACAATTGTATATGTAGTTGTGATCCTT
AATTCTTTCAATCTCTATCTACAGGTGCAGCTAATACAAACACCAGTGGCGTGGATCTTTTTGC
CCCAAACTTATTGGATGATTTCATCGATGTGCCTGCAGCAGCAACTCATGAAACAAACGACTCT
GCAGACGCTCAGGTTGATCTGTTTGCTGATGCAGATTTCCAATCAGCAATACCAAGTACAGAAA
CAGCTGCGGGTTCAGATGTCCAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021