Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os12g0290600_circ_g.3 |
ID in PlantcircBase | osa_circ_011170 |
Alias | Os_ciR7290 |
Organism | Oryza sativa |
Position | chr12: 11225724-11227318 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | Os12g0290600 |
Parent gene annotation |
Similar to Dual specificity protein phosphatase 8 (EC 3.1.3.48) (EC 3.1.3.16) (Neuronal tyrosine threonine phosphatase 1). (Os12 t0290600-01) |
Parent gene strand | - |
Alternative splicing | Os12g0290600_circ_g.1 Os12g0290600_circ_g.2 |
Support reads | 2 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os12t0290600-01:3 |
Conservation Information | |
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Conserved circRNAs | osi_circ_010426 |
PMCS | 0.138254425 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
11227315-11225790(+) 11227130-11225726(-) 11225726-11227244(-) |
Potential amino acid sequence |
MHLLFPYRNVSPSPQTIHLFLRLI*(+) MKSDTDTTRFSSASMRSQLDQATNLKGEQVAAKVKSDEEKDEWFVVKVIHFDKETKDASSALVG LLDGLLQSGTSAAQRKKIEVGEQKKKRMKSDTDTTRFSSASMRSQLDQATNLKGEQVAAKVKSD EEKDEWFVVKVIHFDKETKDASSALVGLLDGLLQSGTSAAQRKKIEVGEQKKKRMKSDTDTTRF SSASMRSQLDQATNLKGEQVAAKVKSDEEKDEWFVVKVIHFDKETKDASSALVGLLDGLLQSGT SAAQRKKIEVGEQKKKRMKSDTDTTRFSSASMRSQLDQATNLKGEQVAAKVKSDEEKDEWFVVK VIHFDKETK(-) MHRLLWLDYWMVCCNLELQLHNEKR*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015 |