Detail information of AT2G37630_circ_g.1


General Information
CircRNA Name AT2G37630_circ_g.1
ID in PlantcircBase ath_circ_017106
Alias NA
Organism Arabidpsis thaliana
Position chr2: 15782251-15782672  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method circRNA_finder, find_circ
Parent gene AT2G37630
Parent gene annotation Transcription factor AS1
Parent gene strand -
Alternative splicing NA
Support reads 2
Tissues whole_plant
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered AT2G37630.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTCTCTGTTGCTTCTCCTTAAACACTTCCCACCACTTCCCTAACCGCTTTGCCGTCCTCCCGG
GAACCTCAGCAGCAATCTTCTTCCACTTGTTGCCGTccacgggattggcggttgaggcgcagct
gcagccactgtggaaggcgataatgtcaaagttaccgagggaggccttgcaacaacattgttcc
cattgtta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCACGGGATTGGCGGTTGAGGCGCAGCTGCAGCCACTGTGGAAGGCGATAATGTCAAAGTTACC
GAGGGAGGCCTTGCAACAACATTGTTCCCATTGTTAGAAGTAGCTAACCAAGGCGGGATCACTG
GGTTAGGAGGCTGAACTTGTTGTTCAGAATGTAAAAACCCTCCATTCGAATTAGCCATCACAAC
CGTTGCAGCAGCGGCAGCAGCAGGGACAACGTTAGACCGCTCTTTGACAAGCTTCTCAGCGAAA
CTCTCGAGAATCCGATCGTACTTACTCTCGTCAATAGGCTCAACTCTCTTGTTACTCTCTTTCT
CTTCTCTCTGTTGCTTCTCCTTAAACACTTCCCACCACTTCCCTAACCGCTTTGCCGTCCTCCC
GGGAACCTCAGCAGCAATCTTCTTCCACTTGTTGCCGT
Conservation Information
Conserved circRNAs NA
PMCS 0.325234678
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017