Detail information of Os06g0130800_circ_g.2


General Information
CircRNA Name Os06g0130800_circ_g.2
ID in PlantcircBase osa_circ_042243
Alias NA
Organism Oryza sativa
Position chr6: 1643208-1643305  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os06g0130800
Parent gene annotation Winged helix repressor DNA-binding domain containing protein. (O
s06t0130800-01)
Parent gene strand -
Alternative splicing Os06g0130800_circ_g.1
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os06t0130800-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCACGGCGAGCACCTTCCGGTAGTTCGCCGGGAGAACCCCCATGTGCTGgaggccttcaccttc
acgagccggcccttggcggcgaagttccgcagct
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 98
Transcript exons: 1643208-1643305
GAGGCCTTCACCTTCACGAGCCGGCCCTTGGCGGCGAAGTTCCGCAGCTGCACGGCGAGCACCT
TCCGGTAGTTCGCCGGGAGAACCCCCATGTGCTG

Genomic sequence GAGGCCTTCACCTTCACGAGCCGGCCCTTGGCGGCGAAGTTCCGCAGCTGCACGGCGAGCACCT
TCCGGTAGTTCGCCGGGAGAACCCCCATGTGCTG
Conservation Information
Conserved circRNAs NA
PMCS 0.204932568
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study