Detail information of BGIOSGA034219_circ_g.2


General Information
CircRNA Name BGIOSGA034219_circ_g.2
ID in PlantcircBase osi_circ_009448
Alias Chr11:7714010_7715096(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr11: 6771789-6772875  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA034219
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-AA
Number of exons covered BGIOSGA034219-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTATGCATTTTCTCCAAATTCGGGCAAGATTATCTGAGCTTACGTTAGTCATAGGCCTAAGCT
CAGAAGAATTACTTCTTTGAGCAGAATCTTGTAAAAccgatcctgacttctacattgcatctca
gtacagtctccatagaatttctgatgctgctcgtgaatctttgagctcgagactttatatcact
gccctcaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCGATCCTGACTTCTACATTGCATCTCAGTACAGTCTCCATAGAATTTCTGATGCTGCTCGTGA
ATCTTTGAGCTCGAGACTTTATATCACTGCCCTCAAATGCTATGAAAGCAATATAATATCCTGA
AAATAAAGTTTACAAAAAAAATGTTGGGCATGCTAGCAGCTCAAATTTAGATTAGTGAAACATT
AGGAAATCGTATAGAAGGGAAAGAAATTCATAAAGGCCCTGTTCTTTTCTCCAACAAAAGTTGG
ATTAAATTTTGGATATTCGTGGCACGCTTTGCAAACCGCTAAACGGTGCGTTTCATGCAAAAAC
TTTCTATATGAAAGTTGTTCTAAAATATAAGATTAATCCATTTTTTAAATTTGTAATAATTAAA
ACTCAATTAATCACACGTTATTACCACCTCGTTTTGCGTGAAACACTTTATCTTCATCTTCAGA
AGATTCAAACACTACCAAAGTTTCTCAGAACTTCGCTTAAACAAGGAAAAGAGGGTTTAATGTT
ATAATATCCATCGGATTAATAATATTAACATGATAACATTAGAACAGAATCAAATATGAGCTTT
CACCTAATCTGCAGGCACTAAATCGACCAACTACAGTTAATAAAAAGTTAATGACACGTTCTGT
TTGAGGCAAGCAATAAACTATGCCTTCATTATACCTTCATTAAACGTTTGTACACCATCCTGGA
ATGCAAAATGCAAAGCATCCAACTACTATCACACTAGCATTTAATCAATACTCAATTTTAGACC
GATTCAGTGGAGGCGGTAGAGCTATACAGCAGCTCTAGCCCTAGTCCAGAAGGTAGGTCCTAAA
GCTCGGCAAACTTGTGAAACAAACTAGTGAAAGCACAAAAAATGGTGCAAGAACAAGAGAGCAT
TCATAGTACAGGTTTACCTCCATAGTCTTTGACAGATGCTAGCTTCCCATGATCACAGAGTAAC
TGCTTCAATGTCTTGGAGTGACAATTATCTATGCATTTTCTCCAAATTCGGGCAAGATTATCTG
AGCTTACGTTAGTCATAGGCCTAAGCTCAGAAGAATTACTTCTTTGAGCAGAATCTTGTAAAA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021