Plant Circular RNA Database

Detail information of Os01g0865600_circ_g.5

			
						 General Information
					
						CircRNA Name
						Os01g0865600_circ_g.5
					
						ID in PlantcircBase
						osa_circ_004947
					
						Alias
						Os_ciR6287
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr1: 37459761-37461605  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							Os01g0865600						
					
						Parent gene annotation
						
							Basic helix-loop-helix dimerisation region bHLH domain containin
g protein. (Os01t0865600-01);Basic helix-loop-helix dimerisation
 region bHLH domain containing protein. (Os01t0865600-02)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os01g0865600_circ_g.1 Os01g0865600_circ_g.2 Os01g0865600_circ_g.3 Os01g0865600_circ_g.4 Os01g0865600_circ_g.6 						
					
						Support reads
						2
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os01t0865600-02:2
Os01t0865600-01:2

General Information
CircRNA Name	Os01g0865600_circ_g.5
ID in PlantcircBase	osa_circ_004947
Alias	Os_ciR6287
Organism	Oryza sativa
Position	chr1: 37459761-37461605 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	find_circ
Parent gene	Os01g0865600
Parent gene annotation	Basic helix-loop-helix dimerisation region bHLH domain containin g protein. (Os01t0865600-01);Basic helix-loop-helix dimerisation region bHLH domain containing protein. (Os01t0865600-02)
Parent gene strand	+
Alternative splicing	Os01g0865600_circ_g.1 Os01g0865600_circ_g.2 Os01g0865600_circ_g.3 Os01g0865600_circ_g.4 Os01g0865600_circ_g.6
Support reads	2
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os01t0865600-02:2 Os01t0865600-01:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TAGCATTGATACATTACTGGAGAAGACCATTAAGCATATGCTTTTCTTGCAAAATGTTGCAAAG
CATGCTGATAAGTTGAAGGGATCTGGGGAGCCAAAGgttatggaggaagcagcatttatagatc
atgtcagatctttgtttcagcagctgggtagttcaactgcagttgttccgtgtggttcctttgt
acaagatt

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1746
Transcript exons: 37459761-37461404,37461504-37461605
GTTATGGAGGAAGCAGCATTTATAGATCATGTCAGATCTTTGTTTCAGCAGCTGGGTAGTTCAA
CTGCAGTTGTTCCGTGTGGTTCCTTTGTACAAGATTCGATTATGAGAACTCCATTTCACAAATC
ACTTGGTGTGCCTACCTCTTCGCACTCGGAAGACCTTGCTGGTGGTGGAAATACTTATAATGAT
GACATGATTAACCACCAGTTCAGGCATCAGAAGTCACCAGCCTCGACAATTCAGTCATTTAACC
CTGTACAACAGTTCTATGCTGGGCCTACTTTCTGTCGTCCAGTAACTATTGCATCACGTTGTGA
TCTCTTCCAACCTGACCATGGATCAACCTTTACTTTGAACAGTCAGTCAGAGGACAATAGATCG
ACAGCTTTACTCAAAAATAGTGTTTCACATTCTAAAACATCAAATGATGCCTTTTCACACGCTT
TTAACCCCCTCAATGAACCCAACGTCTCCATTTCAGGCAGAAGAGAGTGTGTAAGCATAGAACA
ACATGGTTCTTGCCGTAATGGAGAAATGGAAATAACAATAGGCCGCACTGCTTCTTCAAGTTGT
ACAGGCAAAACAAATATTATCAATAAAGTGGATGATTTGCTGAGTCAGGATTGTTTGGTAGGTT
GTCAGGCAAGCAATGCCACATCTGTGAACAGAAAGTTTCAGACAATGTCCATTGTTGATAATAC
AAAGCTTCAAGATGGTTCTTATGCAATTCCACATGCTGCACTTGTTGACTCTACCCAATATTCA
GACTGCTTTCAATCGCTTCTTGGCACAATCCAAGGTAGTTCTTCCAGCAATTCAAATGCAATTC
ATGTGGATACTTCTCATAATGCTGTCCATGGAAAGAGTAACTTTTGCCCTTTAGGAGATAGGAA
TGCTGCTAATTCAAGTGACTTGGCTGAACTTCTGGCATCGCCAATACCATTAGAGTTGACTGGG
GGAAACGATTTGTTTGATGTACTGCAACTTCAGCAGAAGCCAAATGGTTCAAATAATAGTGAAG
TAAACAATCGTCAATCAATGCCTTATGGTTCAGAGCAAGCTGTTAAGTCTCTGATTGGATGTGT
GGATGATGATTTCACTGGATTGATCACAGAAGCTGATCCAGACCAGCTCCTGGATGCAATAGTT
TCAAAGATAATCACAGGGCACAAGCAGAACGTGGATACCAGTGCTTCTTGTAGTACTACAGTGG
CAGGCTTTGACAGACCACTTCATTCTGATTGCCACCTATATACCACAGGACCATCATCAGGGCC
AATATTTTGTAATTTTGCCAGTGTTGCTCCTGTAGCAATTAAAACTGAAGGGCCTGCTGCAGGT
TCCAGGCAATCATCTTCTAGTATAGATAAATCTGCAGGATGCTCTCAGACACAGGAAAGTTACA
AATCACAGATAAGGCTTTGGGTTGAGAATAACCATAGTGTAGGATCAGATAGTCTTTCAACTGG
ACAAGCATCTGACAGTCTTTCAACTGGACAGTGTAAAAGGAGTGATGAAATAGGTAAATCAAAC
CGAAAGAGATCTAGACCAGGGGAGAGTGCAAGACCGAGGCCTAAAGATCGGCAAATGATTCAAG
ACCGTATAAAGGAGCTTCGTGAAATAGTACCTAACAGTGCAAAGTGTAGCATTGATACATTACT
GGAGAAGACCATTAAGCATATGCTTTTCTTGCAAAATGTTGCAAAGCATGCTGATAAGTTGAAG
GGATCTGGGGAGCCAAAG
						
					

						Genomic sequence
						
							GTTATGGAGGAAGCAGCATTTATAGATCATGTCAGATCTTTGTTTCAGCAGCTGGGTAGTTCAA
CTGCAGTTGTTCCGTGTGGTTCCTTTGTACAAGATTCGATTATGAGAACTCCATTTCACAAATC
ACTTGGTGTGCCTACCTCTTCGCACTCGGAAGACCTTGCTGGTGGTGGAAATACTTATAATGAT
GACATGATTAACCACCAGTTCAGGCATCAGAAGTCACCAGCCTCGACAATTCAGTCATTTAACC
CTGTACAACAGTTCTATGCTGGGCCTACTTTCTGTCGTCCAGTAACTATTGCATCACGTTGTGA
TCTCTTCCAACCTGACCATGGATCAACCTTTACTTTGAACAGTCAGTCAGAGGACAATAGATCG
ACAGCTTTACTCAAAAATAGTGTTTCACATTCTAAAACATCAAATGATGCCTTTTCACACGCTT
TTAACCCCCTCAATGAACCCAACGTCTCCATTTCAGGCAGAAGAGAGTGTGTAAGCATAGAACA
ACATGGTTCTTGCCGTAATGGAGAAATGGAAATAACAATAGGCCGCACTGCTTCTTCAAGTTGT
ACAGGCAAAACAAATATTATCAATAAAGTGGATGATTTGCTGAGTCAGGATTGTTTGGTAGGTT
GTCAGGCAAGCAATGCCACATCTGTGAACAGAAAGTTTCAGACAATGTCCATTGTTGATAATAC
AAAGCTTCAAGATGGTTCTTATGCAATTCCACATGCTGCACTTGTTGACTCTACCCAATATTCA
GACTGCTTTCAATCGCTTCTTGGCACAATCCAAGGTAGTTCTTCCAGCAATTCAAATGCAATTC
ATGTGGATACTTCTCATAATGCTGTCCATGGAAAGAGTAACTTTTGCCCTTTAGGAGATAGGAA
TGCTGCTAATTCAAGTGACTTGGCTGAACTTCTGGCATCGCCAATACCATTAGAGTTGACTGGG
GGAAACGATTTGTTTGATGTACTGCAACTTCAGCAGAAGCCAAATGGTTCAAATAATAGTGAAG
TAAACAATCGTCAATCAATGCCTTATGGTTCAGAGCAAGCTGTTAAGTCTCTGATTGGATGTGT
GGATGATGATTTCACTGGATTGATCACAGAAGCTGATCCAGACCAGCTCCTGGATGCAATAGTT
TCAAAGATAATCACAGGGCACAAGCAGAACGTGGATACCAGTGCTTCTTGTAGTACTACAGTGG
CAGGCTTTGACAGACCACTTCATTCTGATTGCCACCTATATACCACAGGACCATCATCAGGGCC
AATATTTTGTAATTTTGCCAGTGTTGCTCCTGTAGCAATTAAAACTGAAGGGCCTGCTGCAGGT
TCCAGGCAATCATCTTCTAGTATAGATAAATCTGCAGGATGCTCTCAGACACAGGAAAGTTACA
AATCACAGATAAGGCTTTGGGTTGAGAATAACCATAGTGTAGGATCAGATAGTCTTTCAACTGG
ACAAGCATCTGACAGTCTTTCAACTGGACAGTGTAAAAGGAGTGATGAAATAGGTAAATCAAAC
CGAAAGAGATCTAGACCAGGGGAGAGTGCAAGACCGAGGCCTAAAGATCGGCAAATGATTCAAG
ACCGTATAAAGGAGCTTCGTGAAATAGTACCTAACAGTGCAAAGGTAACAGCACCAACACATAG
ATACCCCTATATTGACCTTTAAAATAAAACACATTATTTATCATATTTTTGGTACTTAGATTTC
TGTTTGATTAAACAGTGTAGCATTGATACATTACTGGAGAAGACCATTAAGCATATGCTTTTCT
TGCAAAATGTTGCAAAGCATGCTGATAAGTTGAAGGGATCTGGGGAGCCAAAG
						
					

			
		

Sequences
Splice junction sequence	TAGCATTGATACATTACTGGAGAAGACCATTAAGCATATGCTTTTCTTGCAAAATGTTGCAAAG CATGCTGATAAGTTGAAGGGATCTGGGGAGCCAAAGgttatggaggaagcagcatttatagatc atgtcagatctttgtttcagcagctgggtagttcaactgcagttgttccgtgtggttcctttgt acaagatt
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1746 Transcript exons: 37459761-37461404,37461504-37461605 GTTATGGAGGAAGCAGCATTTATAGATCATGTCAGATCTTTGTTTCAGCAGCTGGGTAGTTCAA CTGCAGTTGTTCCGTGTGGTTCCTTTGTACAAGATTCGATTATGAGAACTCCATTTCACAAATC ACTTGGTGTGCCTACCTCTTCGCACTCGGAAGACCTTGCTGGTGGTGGAAATACTTATAATGAT GACATGATTAACCACCAGTTCAGGCATCAGAAGTCACCAGCCTCGACAATTCAGTCATTTAACC CTGTACAACAGTTCTATGCTGGGCCTACTTTCTGTCGTCCAGTAACTATTGCATCACGTTGTGA TCTCTTCCAACCTGACCATGGATCAACCTTTACTTTGAACAGTCAGTCAGAGGACAATAGATCG ACAGCTTTACTCAAAAATAGTGTTTCACATTCTAAAACATCAAATGATGCCTTTTCACACGCTT TTAACCCCCTCAATGAACCCAACGTCTCCATTTCAGGCAGAAGAGAGTGTGTAAGCATAGAACA ACATGGTTCTTGCCGTAATGGAGAAATGGAAATAACAATAGGCCGCACTGCTTCTTCAAGTTGT ACAGGCAAAACAAATATTATCAATAAAGTGGATGATTTGCTGAGTCAGGATTGTTTGGTAGGTT GTCAGGCAAGCAATGCCACATCTGTGAACAGAAAGTTTCAGACAATGTCCATTGTTGATAATAC AAAGCTTCAAGATGGTTCTTATGCAATTCCACATGCTGCACTTGTTGACTCTACCCAATATTCA GACTGCTTTCAATCGCTTCTTGGCACAATCCAAGGTAGTTCTTCCAGCAATTCAAATGCAATTC ATGTGGATACTTCTCATAATGCTGTCCATGGAAAGAGTAACTTTTGCCCTTTAGGAGATAGGAA TGCTGCTAATTCAAGTGACTTGGCTGAACTTCTGGCATCGCCAATACCATTAGAGTTGACTGGG GGAAACGATTTGTTTGATGTACTGCAACTTCAGCAGAAGCCAAATGGTTCAAATAATAGTGAAG TAAACAATCGTCAATCAATGCCTTATGGTTCAGAGCAAGCTGTTAAGTCTCTGATTGGATGTGT GGATGATGATTTCACTGGATTGATCACAGAAGCTGATCCAGACCAGCTCCTGGATGCAATAGTT TCAAAGATAATCACAGGGCACAAGCAGAACGTGGATACCAGTGCTTCTTGTAGTACTACAGTGG CAGGCTTTGACAGACCACTTCATTCTGATTGCCACCTATATACCACAGGACCATCATCAGGGCC AATATTTTGTAATTTTGCCAGTGTTGCTCCTGTAGCAATTAAAACTGAAGGGCCTGCTGCAGGT TCCAGGCAATCATCTTCTAGTATAGATAAATCTGCAGGATGCTCTCAGACACAGGAAAGTTACA AATCACAGATAAGGCTTTGGGTTGAGAATAACCATAGTGTAGGATCAGATAGTCTTTCAACTGG ACAAGCATCTGACAGTCTTTCAACTGGACAGTGTAAAAGGAGTGATGAAATAGGTAAATCAAAC CGAAAGAGATCTAGACCAGGGGAGAGTGCAAGACCGAGGCCTAAAGATCGGCAAATGATTCAAG ACCGTATAAAGGAGCTTCGTGAAATAGTACCTAACAGTGCAAAGTGTAGCATTGATACATTACT GGAGAAGACCATTAAGCATATGCTTTTCTTGCAAAATGTTGCAAAGCATGCTGATAAGTTGAAG GGATCTGGGGAGCCAAAG
Genomic sequence	GTTATGGAGGAAGCAGCATTTATAGATCATGTCAGATCTTTGTTTCAGCAGCTGGGTAGTTCAA CTGCAGTTGTTCCGTGTGGTTCCTTTGTACAAGATTCGATTATGAGAACTCCATTTCACAAATC ACTTGGTGTGCCTACCTCTTCGCACTCGGAAGACCTTGCTGGTGGTGGAAATACTTATAATGAT GACATGATTAACCACCAGTTCAGGCATCAGAAGTCACCAGCCTCGACAATTCAGTCATTTAACC CTGTACAACAGTTCTATGCTGGGCCTACTTTCTGTCGTCCAGTAACTATTGCATCACGTTGTGA TCTCTTCCAACCTGACCATGGATCAACCTTTACTTTGAACAGTCAGTCAGAGGACAATAGATCG ACAGCTTTACTCAAAAATAGTGTTTCACATTCTAAAACATCAAATGATGCCTTTTCACACGCTT TTAACCCCCTCAATGAACCCAACGTCTCCATTTCAGGCAGAAGAGAGTGTGTAAGCATAGAACA ACATGGTTCTTGCCGTAATGGAGAAATGGAAATAACAATAGGCCGCACTGCTTCTTCAAGTTGT ACAGGCAAAACAAATATTATCAATAAAGTGGATGATTTGCTGAGTCAGGATTGTTTGGTAGGTT GTCAGGCAAGCAATGCCACATCTGTGAACAGAAAGTTTCAGACAATGTCCATTGTTGATAATAC AAAGCTTCAAGATGGTTCTTATGCAATTCCACATGCTGCACTTGTTGACTCTACCCAATATTCA GACTGCTTTCAATCGCTTCTTGGCACAATCCAAGGTAGTTCTTCCAGCAATTCAAATGCAATTC ATGTGGATACTTCTCATAATGCTGTCCATGGAAAGAGTAACTTTTGCCCTTTAGGAGATAGGAA TGCTGCTAATTCAAGTGACTTGGCTGAACTTCTGGCATCGCCAATACCATTAGAGTTGACTGGG GGAAACGATTTGTTTGATGTACTGCAACTTCAGCAGAAGCCAAATGGTTCAAATAATAGTGAAG TAAACAATCGTCAATCAATGCCTTATGGTTCAGAGCAAGCTGTTAAGTCTCTGATTGGATGTGT GGATGATGATTTCACTGGATTGATCACAGAAGCTGATCCAGACCAGCTCCTGGATGCAATAGTT TCAAAGATAATCACAGGGCACAAGCAGAACGTGGATACCAGTGCTTCTTGTAGTACTACAGTGG CAGGCTTTGACAGACCACTTCATTCTGATTGCCACCTATATACCACAGGACCATCATCAGGGCC AATATTTTGTAATTTTGCCAGTGTTGCTCCTGTAGCAATTAAAACTGAAGGGCCTGCTGCAGGT TCCAGGCAATCATCTTCTAGTATAGATAAATCTGCAGGATGCTCTCAGACACAGGAAAGTTACA AATCACAGATAAGGCTTTGGGTTGAGAATAACCATAGTGTAGGATCAGATAGTCTTTCAACTGG ACAAGCATCTGACAGTCTTTCAACTGGACAGTGTAAAAGGAGTGATGAAATAGGTAAATCAAAC CGAAAGAGATCTAGACCAGGGGAGAGTGCAAGACCGAGGCCTAAAGATCGGCAAATGATTCAAG ACCGTATAAAGGAGCTTCGTGAAATAGTACCTAACAGTGCAAAGGTAACAGCACCAACACATAG ATACCCCTATATTGACCTTTAAAATAAAACACATTATTTATCATATTTTTGGTACTTAGATTTC TGTTTGATTAAACAGTGTAGCATTGATACATTACTGGAGAAGACCATTAAGCATATGCTTTTCT TGCAAAATGTTGCAAAGCATGCTGATAAGTTGAAGGGATCTGGGGAGCCAAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.20646402

Conservation Information
Conserved circRNAs	NA
PMCS	0.20646402

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							37459765-37461602(+)
37459792-37461521(-)
						
					

						Potential amino acid sequence
						
							MEEAAFIDHVRSLFQQLGSSTAVVPCGSFVQDSIMRTPFHKSLGVPTSSHSEDLAGGGNTYNDD
MINHQFRHQKSPASTIQSFNPVQQFYAGPTFCRPVTIASRCDLFQPDHGSTFTLNSQSEDNRST
ALLKNSVSHSKTSNDAFSHAFNPLNEPNVSISGRRECVSIEQHGSCRNGEMEITIGRTASSSCT
GKTNIINKVDDLLSQDCLVGCQASNATSVNRKFQTMSIVDNTKLQDGSYAIPHAALVDSTQYSD
CFQSLLGTIQGSSSSNSNAIHVDTSHNAVHGKSNFCPLGDRNAANSSDLAELLASPIPLELTGG
NDLFDVLQLQQKPNGSNNSEVNNRQSMPYGSEQAVKSLIGCVDDDFTGLITEADPDQLLDAIVS
KIITGHKQNVDTSASCSTTVAGFDRPLHSDCHLYTTGPSSGPIFCNFASVAPVAIKTEGPAAGS
RQSSSSIDKSAGCSQTQESYKSQIRLWVENNHSVGSDSLSTGQASDSLSTGQCKRSDEIGKSNR
KRSRPGESARPRPKDRQMIQDRIKELREIVPNSAKCSIDTLLEKTIKHMLFLQNVAKHADKLKG
SGEPKVMEEAAFIDHVRSLFQQLGSSTAVVPCGSFVQDSIMRTPFHKSLGVPTSSHSEDLAGGG
NTYNDDMINHQFRHQKSPASTIQSFNPVQQFYAGPTFCRPVTIASRCDLFQPDHGSTFTLNSQS
EDNRSTALLKNSVSHSKTSNDAFSHAFNPLNEPNVSISGRRECVSIEQHGSCRNGEMEITIGRT
ASSSCTGKTNIINKVDDLLSQDCLVGCQASNATSVNRKFQTMSIVDNTKLQDGSYAIPHAALVD
STQYSDCFQSLLGTIQGSSSSNSNAIHVDTSHNAVHGKSNFCPLGDRNAANSSDLAELLASPIP
LELTGGNDLFDVLQLQQKPNGSNNSEVNNRQSMPYGSEQAVKSLIGCVDDDFTGLITEADPDQL
LDAIVSKIITGHKQNVDTSASCSTTVAGFDRPLHSDCHLYTTGPSSGPIFCNFASVAPVAIKTE
GPAAGSRQSSSSIDKSAGCSQTQESYKSQIRLWVENNHSVGSDSLSTGQASDSLSTGQCKRSDE
IGKSNRKRSRPGESARPRPKDRQMIQDRIKELREIVPNSAKCSIDTLLEKTIKHMLFLQNVAKH
ADKLKGSGEPKVMEEAAFIDHVRSLFQQLGSSTAVVPCGSFVQDSIMRTPFHKSLGVPTSSHSE
DLAGGGNTYNDDMINHQFRHQKSPASTIQSFNPVQQFYAGPTFCRPVTIASRCDLFQPDHGSTF
TLNSQSEDNRSTALLKNSVSHSKTSNDAFSHAFNPLNEPNVSISGRRECVSIEQHGSCRNGEME
ITIGRTASSSCTGKTNIINKVDDLLSQDCLVGCQASNATSVNRKFQTMSIVDNTKLQDGSYAIP
HAALVDSTQYSDCFQSLLGTIQGSSSSNSNAIHVDTSHNAVHGKSNFCPLGDRNAANSSDLAEL
LASPIPLELTGGNDLFDVLQLQQKPNGSNNSEVNNRQSMPYGSEQAVKSLIGCVDDDFTGLITE
ADPDQLLDAIVSKIITGHKQNVDTSASCSTTVAGFDRPLHSDCHLYTTGPSSGPIFCNFASVAP
VAIKTEGPAAGSRQSSSSIDKSAGCSQTQESYKSQIRLWVENNHSVGSDSLSTGQASDSLSTGQ
CKRSDEIGKSNRKRSRPGESARPRPKDRQMIQDRIKELREIVPNSAKCSIDTLLEKTIKHMLFL
QNVAKHADKLKGSGEPKVMEEAAFIDHVRSLFQQLGSSTAVVPCGSFVQDSIMRTPFHKSLGVP
TSSHSEDLAGGGNTYNDDMINHQFRHQKSPASTIQSFNPVQQFYAGPTFCRPVTIASRCDLFQP
DHGSTFTLNSQSEDNRSTALLKNSVSHSKTSNDAFSHAFNPLNEPNVSISGRRECVSIEQHGSC
RNGEMEITIGRTASSSCTGKTNIINKVDDLLSQDCLVGCQASNATSVNRKFQTMSIVDNTKLQD
GSYAIPHAALVDSTQYSDCFQSLLGTIQGSSSSNSNAIHVDTSHNAVHGKSNFCPLGDRNAANS
SDLAELLASPIPLELTGGNDLFDVLQLQQKPNGSNNSEVNNRQSMPYGSEQAVKSLIGCVDDDF
TGLITEADPDQLLDAIVSKIITGHKQNVDTSASCSTTVAGFDRPLHSDCHLYTTGPSSGPIFCN
FASVAPVAIKTEGPAAGSRQSSSSIDKSAGCSQTQESYKSQIRLWVENNHSVGSDSLSTGQASD
SLSTGQCKRSDEIGKSNRKRSRPGESARPRPKDRQMIQDRIKELREIVPNSAKCSIDTLLEKTI
KHMLFLQNVAKHADKLKGSGEPK(+)
MIYKCCFLHNLWLPRSLQLISMLCNILQEKHMLNGLLQ*(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	37459765-37461602(+) 37459792-37461521(-)
Potential amino acid sequence	MEEAAFIDHVRSLFQQLGSSTAVVPCGSFVQDSIMRTPFHKSLGVPTSSHSEDLAGGGNTYNDD MINHQFRHQKSPASTIQSFNPVQQFYAGPTFCRPVTIASRCDLFQPDHGSTFTLNSQSEDNRST ALLKNSVSHSKTSNDAFSHAFNPLNEPNVSISGRRECVSIEQHGSCRNGEMEITIGRTASSSCT GKTNIINKVDDLLSQDCLVGCQASNATSVNRKFQTMSIVDNTKLQDGSYAIPHAALVDSTQYSD CFQSLLGTIQGSSSSNSNAIHVDTSHNAVHGKSNFCPLGDRNAANSSDLAELLASPIPLELTGG NDLFDVLQLQQKPNGSNNSEVNNRQSMPYGSEQAVKSLIGCVDDDFTGLITEADPDQLLDAIVS KIITGHKQNVDTSASCSTTVAGFDRPLHSDCHLYTTGPSSGPIFCNFASVAPVAIKTEGPAAGS RQSSSSIDKSAGCSQTQESYKSQIRLWVENNHSVGSDSLSTGQASDSLSTGQCKRSDEIGKSNR KRSRPGESARPRPKDRQMIQDRIKELREIVPNSAKCSIDTLLEKTIKHMLFLQNVAKHADKLKG SGEPKVMEEAAFIDHVRSLFQQLGSSTAVVPCGSFVQDSIMRTPFHKSLGVPTSSHSEDLAGGG NTYNDDMINHQFRHQKSPASTIQSFNPVQQFYAGPTFCRPVTIASRCDLFQPDHGSTFTLNSQS EDNRSTALLKNSVSHSKTSNDAFSHAFNPLNEPNVSISGRRECVSIEQHGSCRNGEMEITIGRT ASSSCTGKTNIINKVDDLLSQDCLVGCQASNATSVNRKFQTMSIVDNTKLQDGSYAIPHAALVD STQYSDCFQSLLGTIQGSSSSNSNAIHVDTSHNAVHGKSNFCPLGDRNAANSSDLAELLASPIP LELTGGNDLFDVLQLQQKPNGSNNSEVNNRQSMPYGSEQAVKSLIGCVDDDFTGLITEADPDQL LDAIVSKIITGHKQNVDTSASCSTTVAGFDRPLHSDCHLYTTGPSSGPIFCNFASVAPVAIKTE GPAAGSRQSSSSIDKSAGCSQTQESYKSQIRLWVENNHSVGSDSLSTGQASDSLSTGQCKRSDE IGKSNRKRSRPGESARPRPKDRQMIQDRIKELREIVPNSAKCSIDTLLEKTIKHMLFLQNVAKH ADKLKGSGEPKVMEEAAFIDHVRSLFQQLGSSTAVVPCGSFVQDSIMRTPFHKSLGVPTSSHSE DLAGGGNTYNDDMINHQFRHQKSPASTIQSFNPVQQFYAGPTFCRPVTIASRCDLFQPDHGSTF TLNSQSEDNRSTALLKNSVSHSKTSNDAFSHAFNPLNEPNVSISGRRECVSIEQHGSCRNGEME ITIGRTASSSCTGKTNIINKVDDLLSQDCLVGCQASNATSVNRKFQTMSIVDNTKLQDGSYAIP HAALVDSTQYSDCFQSLLGTIQGSSSSNSNAIHVDTSHNAVHGKSNFCPLGDRNAANSSDLAEL LASPIPLELTGGNDLFDVLQLQQKPNGSNNSEVNNRQSMPYGSEQAVKSLIGCVDDDFTGLITE ADPDQLLDAIVSKIITGHKQNVDTSASCSTTVAGFDRPLHSDCHLYTTGPSSGPIFCNFASVAP VAIKTEGPAAGSRQSSSSIDKSAGCSQTQESYKSQIRLWVENNHSVGSDSLSTGQASDSLSTGQ CKRSDEIGKSNRKRSRPGESARPRPKDRQMIQDRIKELREIVPNSAKCSIDTLLEKTIKHMLFL QNVAKHADKLKGSGEPKVMEEAAFIDHVRSLFQQLGSSTAVVPCGSFVQDSIMRTPFHKSLGVP TSSHSEDLAGGGNTYNDDMINHQFRHQKSPASTIQSFNPVQQFYAGPTFCRPVTIASRCDLFQP DHGSTFTLNSQSEDNRSTALLKNSVSHSKTSNDAFSHAFNPLNEPNVSISGRRECVSIEQHGSC RNGEMEITIGRTASSSCTGKTNIINKVDDLLSQDCLVGCQASNATSVNRKFQTMSIVDNTKLQD GSYAIPHAALVDSTQYSDCFQSLLGTIQGSSSSNSNAIHVDTSHNAVHGKSNFCPLGDRNAANS SDLAELLASPIPLELTGGNDLFDVLQLQQKPNGSNNSEVNNRQSMPYGSEQAVKSLIGCVDDDF TGLITEADPDQLLDAIVSKIITGHKQNVDTSASCSTTVAGFDRPLHSDCHLYTTGPSSGPIFCN FASVAPVAIKTEGPAAGSRQSSSSIDKSAGCSQTQESYKSQIRLWVENNHSVGSDSLSTGQASD SLSTGQCKRSDEIGKSNRKRSRPGESARPRPKDRQMIQDRIKELREIVPNSAKCSIDTLLEKTI KHMLFLQNVAKHADKLKGSGEPK(+) MIYKCCFLHNLWLPRSLQLISMLCNILQEKHMLNGLLQ*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015

circRNA

Detail information of Os01g0865600_circ_g.5

Address

Any questions?

Supported by