Plant Circular RNA Database

Detail information of AT2G18230_circ_g.2

			
						 General Information
					
						CircRNA Name
						AT2G18230_circ_g.2
					
						ID in PlantcircBase
						ath_circ_013694
					
						Alias
						2:7932436-7934276
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr2: 7932436-7934276  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							AT2G18230						
					
						Parent gene annotation
						
							PPa2
							
						Parent gene strand
						-
					
						Alternative splicing
						
							AT2G18230_circ_g.1 AT2G18230_circ_g.3 AT2G18230_circ_g.4 						
					
						Support reads
						2
					
						Tissues
						flower
					
						Exon boundary  
						
							Yes-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT2G18230.1:7

General Information
CircRNA Name	AT2G18230_circ_g.2
ID in PlantcircBase	ath_circ_013694
Alias	2:7932436-7934276
Organism	Arabidpsis thaliana
Position	chr2: 7932436-7934276 JBrowse»
Reference genome	TAIR10.38
Type	ue-circRNA
Identification method	find_circ; CIRI2
Parent gene	AT2G18230
Parent gene annotation	PPa2
Parent gene strand	-
Alternative splicing	AT2G18230_circ_g.1 AT2G18230_circ_g.3 AT2G18230_circ_g.4
Support reads	2
Tissues	flower
Exon boundary	Yes-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT2G18230.1:7

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AAGAAACGAGAGAAGAAGAAGAAGATGATCTTACAGATGAAATCTCAAGCTTCAATCGCGAAAC
CGAAGCAGAGAATCCGTAACGTTTTTTTCTTTCTTTagtcctcaaagaagcgacggatttcagc
tagacggtgagggggaagctctttgatgtctctgtagtgacggaactcgggatcatcagcacat
actgcaat

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							AGTCCTCAAAGAAGCGACGGATTTCAGCTAGACGGTGAGGGGGAAGCTCTTTGATGTCTCTGTA
GTGACGGAACTCGGGATCATCAGCACATACTGCAATGATCTTGTCGTCTTTCTCACCCTGCAAG
TTTCAGAACAAGGTGATTCCTGGTTTCTTACTAAGGTAATACATTACATAGAGGTAGAATTGGG
TTTAAGAGTTTTTGTTACCTGATCAATCATGGGCATTAGACCAATAGCACGGGCACGGAGGAAT
GATCCGGTTAGCACAGGCTCCTGCACAGTATTTTATCTCAAGTCTGTTATTTCACTGCCTGTTT
ACATCAAGTTTGTATGAACATGAAAGCTAAGATGAGGCGAGAGAAAGCACCTGCATCAGTACCA
GGACATCCATTGGATCACTGTCTTCACAGATAGTTCGAGGGATGAAACCGTAGTTGTGGGGGTA
CACAATGGATGAGTAGAGAACGCGATCAACCTAGAGAGGAAAACTTTCAGTGATCAGAGTTTTT
CTTCATTTCGACTCTTACGGTGAAGGATATTTAGTTGGAATGCATAAAATGTGACTTATGATAT
ATCTAGCAACAAAGAATTCCTCATATAACCGCATAATCAGACTATATATTGAGGGATCAGAAGA
CAGGTTATACTCAATCAAAGCATATATGATGCAAGCAGAGACTGCCAAAGAACACTGTACCTTA
ATAAGGCCACTGTTCTTGTCTAGCTCGTACTTAACCTTTCCACCTTTGCTAATTTCAACAACCT
GACAAAGAATTCAAGCACATTTAACAATCACAAGACCAGCACTAACTTTCTTAATATGATCTAA
TCTTCCGCAATGTAGAAGAAGATAAAACTTACACAGTTGAAAACAGTAGGAGCTTCTGGACCTG
AAAGATTCAACAAACAAAACACTTACATCAAACAATCAACACTTGACTCACATGACTATTCAAA
GTAACAAAGACAAGGATTCTTACCAATCTCCAAGTCATGCCAAGGATGAGCAGCAGCTGATCTG
TGAGTGAAGGCTGCAAAGTTTCTCTCATTCAGCGTAACATTAGGGTTCCTGAGAGGGAAAGCAT
AGCCCTTGGCGCTTCCTTCATCCTTGATTTCAGCCATATCGGATGTTCACTATAATATGCAAAC
AAAAGGAGAGTCTCATTCAATCATATACCAAACTCAAAACAGGCCATATAAATTATTCTCACTA
CTTAACCATTTCATACAATAACCACCAGACAAATCCTTCAACATTCCAGCAGAATCCAATCTTA
TAAACCATAAAAAATGACTGTTCAAATCCGAGCAGAGAAATGAAGCACACATTTCTACGATGGT
TCACTGTTCTAATGCAACTCAATATCATCTTAGGCAAATATCTAACAACGCGAAAGGCTAAAGT
ATCAGAGATATGCGAAGAACATAGATCCATCATCGATTTCATGTAAATACACATCAAAACACTC
AAATCACCAACTAGTCTAAGCTACATCAATTGGAAACTGAAATAGAATCGAAAAACAGAACTAA
TCCAAACAAATGAAAGATAATCGACGAATCGATCATCTGTGAAGACCAATCCAAGTACTCGGCG
CTCAAAACGAAACGAAACCAACAAGAAAATAGCAAAATCAAACGAAATCGCTTCGATTCAACAA
GAAGTGATCAAAACAAGTACCATTAACAGGAGAAGATAAACTAAAAATGACCTAATCGACGGAT
TTCGAAGGAAAAAAAGAAACGAGAGAAGAAGAAGAAGATGATCTTACAGATGAAATCTCAAGCT
TCAATCGCGAAACCGAAGCAGAGAATCCGTAACGTTTTTTTCTTTCTTT
						
					

			
		

Sequences
Splice junction sequence	AAGAAACGAGAGAAGAAGAAGAAGATGATCTTACAGATGAAATCTCAAGCTTCAATCGCGAAAC CGAAGCAGAGAATCCGTAACGTTTTTTTCTTTCTTTagtcctcaaagaagcgacggatttcagc tagacggtgagggggaagctctttgatgtctctgtagtgacggaactcgggatcatcagcacat actgcaat
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	AGTCCTCAAAGAAGCGACGGATTTCAGCTAGACGGTGAGGGGGAAGCTCTTTGATGTCTCTGTA GTGACGGAACTCGGGATCATCAGCACATACTGCAATGATCTTGTCGTCTTTCTCACCCTGCAAG TTTCAGAACAAGGTGATTCCTGGTTTCTTACTAAGGTAATACATTACATAGAGGTAGAATTGGG TTTAAGAGTTTTTGTTACCTGATCAATCATGGGCATTAGACCAATAGCACGGGCACGGAGGAAT GATCCGGTTAGCACAGGCTCCTGCACAGTATTTTATCTCAAGTCTGTTATTTCACTGCCTGTTT ACATCAAGTTTGTATGAACATGAAAGCTAAGATGAGGCGAGAGAAAGCACCTGCATCAGTACCA GGACATCCATTGGATCACTGTCTTCACAGATAGTTCGAGGGATGAAACCGTAGTTGTGGGGGTA CACAATGGATGAGTAGAGAACGCGATCAACCTAGAGAGGAAAACTTTCAGTGATCAGAGTTTTT CTTCATTTCGACTCTTACGGTGAAGGATATTTAGTTGGAATGCATAAAATGTGACTTATGATAT ATCTAGCAACAAAGAATTCCTCATATAACCGCATAATCAGACTATATATTGAGGGATCAGAAGA CAGGTTATACTCAATCAAAGCATATATGATGCAAGCAGAGACTGCCAAAGAACACTGTACCTTA ATAAGGCCACTGTTCTTGTCTAGCTCGTACTTAACCTTTCCACCTTTGCTAATTTCAACAACCT GACAAAGAATTCAAGCACATTTAACAATCACAAGACCAGCACTAACTTTCTTAATATGATCTAA TCTTCCGCAATGTAGAAGAAGATAAAACTTACACAGTTGAAAACAGTAGGAGCTTCTGGACCTG AAAGATTCAACAAACAAAACACTTACATCAAACAATCAACACTTGACTCACATGACTATTCAAA GTAACAAAGACAAGGATTCTTACCAATCTCCAAGTCATGCCAAGGATGAGCAGCAGCTGATCTG TGAGTGAAGGCTGCAAAGTTTCTCTCATTCAGCGTAACATTAGGGTTCCTGAGAGGGAAAGCAT AGCCCTTGGCGCTTCCTTCATCCTTGATTTCAGCCATATCGGATGTTCACTATAATATGCAAAC AAAAGGAGAGTCTCATTCAATCATATACCAAACTCAAAACAGGCCATATAAATTATTCTCACTA CTTAACCATTTCATACAATAACCACCAGACAAATCCTTCAACATTCCAGCAGAATCCAATCTTA TAAACCATAAAAAATGACTGTTCAAATCCGAGCAGAGAAATGAAGCACACATTTCTACGATGGT TCACTGTTCTAATGCAACTCAATATCATCTTAGGCAAATATCTAACAACGCGAAAGGCTAAAGT ATCAGAGATATGCGAAGAACATAGATCCATCATCGATTTCATGTAAATACACATCAAAACACTC AAATCACCAACTAGTCTAAGCTACATCAATTGGAAACTGAAATAGAATCGAAAAACAGAACTAA TCCAAACAAATGAAAGATAATCGACGAATCGATCATCTGTGAAGACCAATCCAAGTACTCGGCG CTCAAAACGAAACGAAACCAACAAGAAAATAGCAAAATCAAACGAAATCGCTTCGATTCAACAA GAAGTGATCAAAACAAGTACCATTAACAGGAGAAGATAAACTAAAAATGACCTAATCGACGGAT TTCGAAGGAAAAAAAGAAACGAGAGAAGAAGAAGAAGATGATCTTACAGATGAAATCTCAAGCT TCAATCGCGAAACCGAAGCAGAGAATCCGTAACGTTTTTTTCTTTCTTT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.145929011

Conservation Information
Conserved circRNAs	NA
PMCS	0.145929011

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of AT2G18230_circ_g.2

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