Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d016506_circ_g.1 |
ID in PlantcircBase | zma_circ_008701 |
Alias | zma_circ_0001910 |
Organism | Zea mays |
Position | chr5: 165302668-165303020 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d016506 |
Parent gene annotation |
Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltr ansferase SEC |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d016506_T021:2 Zm00001d016506_T025:2 Zm00001d016506_T009:2 Zm00001d016506_T002:2 Zm00001d016506_T010:2 Zm00001d016506_T024:2 Zm00001d016506_T004:2 Zm00001d016506_T013:2 Zm00001d016506_T015:2 Zm00001d016506_T003:2 Zm00001d016506_T006:2 Zm00001d016506_T014:2 Zm00001d016506_T027:2 Zm00001d016506_T018:2 Zm00001d016506_T008:2 Zm00001d016506_T019:2 Zm00001d016506_T016:2 Zm00001d016506_T023:2 Zm00001d016506_T001:2 Zm00001d016506_T005:2 Zm00001d016506_T012:2 Zm00001d016506_T022:2 Zm00001d016506_T007:2 Zm00001d016506_T011:2 Zm00001d016506_T026:2 Zm00001d016506_T020:2 Zm00001d016506_T017:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.252125165 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
165302787-165302754(+) 165302673-165302964(-) 165302967-165302990(-) |
Potential amino acid sequence |
MLLTIISSPSPVATQREPATLVAIFSSGRVIIGRPAHSMSVPVVCALQRGPSSCIKQRAGHTNF LELVSQRLKLHRIQR*(+) MVPSAMHTQQALTYCGLVCQ*(-) MITLPLEKMATRVAGSLCVATGLGEEMIVSSMKKYEDRAVELALNPVKLQALTNKLKEVRMTCP LFDTARWSPLQCTHNRH*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |