Detail information of AT3G20150_circ_g.3


General Information
CircRNA Name AT3G20150_circ_g.3
ID in PlantcircBase ath_circ_022905
Alias NA
Organism Arabidpsis thaliana
Position chr3: 7034185-7036233  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method KNIFE, PcircRNA_finder
Parent gene AT3G20150
Parent gene annotation Kinesin-like protein KIN-12F
Parent gene strand +
Alternative splicing AT3G20150_circ_g.4
Support reads 9
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT3G20150.1:4
AT3G20150.2:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTCAAGATTCAACTAAGGAATACTGCTGAAGCTGTTCATACTGCTGGAGAAGTTCTTGTTAGA
CTCAGAGAAGCCGAACAATCAGCATCAGCTGCTGAGgaagaactttcaaaagtcaaagccgatg
cttgtcattctgttggaagtaaaaatgattatttcggagcaaagaatgcacgtgaaagtttgaa
tcaactaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAAGAACTTTCAAAAGTCAAAGCCGATGCTTGTCATTCTGTTGGAAGTAAAAATGATTATTTCG
GAGCAAAGAATGCACGTGAAAGTTTGAATCAACTAAGAGTTAGTCTTAACCGCTCTTTGATGCT
GCCAAAAATTGATAATGACGAGGAAGAGATAACGGTTGATGAGGATGATTTTAAGGAACTGCAT
CTGCAGATCAAGTCCTTGCGTGGTTCATTTAACCAGAAACTAAAGAAGTTCCCTGTCAACAGAG
ACTCGGTCAACTCATCCTTTGTAACAGCATTCGGTGAATCAGAGCTAATGGATGATGATGAGAT
ATGTTCAGAAGAAGTAGAAGTTGAGGAGAATGATTTTGGTGAATCTTTGGAAGAACATGACAGT
GCTGCAACAGTATGTAAATCAAGTGAGAAATCCAGGATAGAGGAATTTGTATCGGAAAACAGCA
TATCAATCAGTCCCTGCCGTCAATCCTTAATCTTGCAAGAACCCATCCAGTCAGAGTCACCTAA
ATTCAGAGATTCTCTACGGAAGAGCATAGCTCTTTCTTCGTCATGTCTCAGGAATCAGAATAGC
TTGGCGAAGAGCATAAAATCCACGTGTTTTGCAGAGAGCCAACATATCAGATCATCTTTACGCG
GAAGCAAGATATTCACAGGTTCTACAGAATCTCTAGCTGCAAGTCTGCGGAGAGGCTTGGATAT
TATTGACAATCCCATGAACCCTGCATCAAACCGATGCTCAGTTTCTTTGTCTTCTGATAACTTG
ACCATGCAACCTCCCACAGATGATCGATTACCTCTGTCGCCACTCTGTCCAACCTGCAGAATTT
GCAGCTCTAAGTTACCAAGTGTAGTTGAGGGAGTAAGTATATGATATAGCAGATACAATATGTT
TTAATAGATTTAGTTTTTACAGTTATCCTGAAGCTAACGTTGCTGGATTTATTGTTAATCAGGA
TGGATATCATATGGAAGGGGTTCTTGAGAAGCAGCAAGAGCTTGAAAAATTGTGCTCAGAGCAA
GCAGCCAAGATTGAACAGCTAACGCGCCTGGTAACCCAATTTCTATGTCTTATGCCTACTGAAA
CTTGGATCAGTACATATGGTTAAGCAGTCTGGTTATATCATATCTTCTTAAGGTAGGGCAACAC
AAACTTCAAACTGAGGATGAAACAGAAAAACTTATGGGAGCAAGTAATGGAGAACGACTTCCTT
CTGCAAATGAAAACCAGGTTGGTTCTTACTTTAATTTACTATGTGACTACTATAGTGAAGAAAA
TATGATAGATTGTAACATAAATCCCAACTCCATGGTTCTGTAGCTTCTCAGCTGTATAACTGAA
ACATATGACGTAAAACAAATCTCGGATGATGACTCCAAGAAGACAGACTTTGATATTGGCGAGA
AGGAGGCATTACTCAAAGAAATTGAGGATCTGAAAAAAAAATTGCAGACGCCTGTAACCATGTC
CACCAATGAACTGAGATCATCTCTGTTGGCTCGTTCGTTTCAACTCCGTAGCAAGAATGCTGAA
AAAGATATCGAGGAAGAAAGACTTAGGTGCACAGAAATGGAAAGCGAGTGGATATCATTGACTG
ACGAATTCAGAGTAGAGATTGAAACTCAACGTACACGCGCAGAGAAAGCTGAAGCCCAGCTTAA
ACAAGAGAAACTATCTTCTGAGGAGCTAGAAGATGCACTTCGCAGAGCTGTTCTTGGTCATGCC
AGGTTTGTTGAACACTACACAGAGCTACAAGAGAAGTACAACGACTTATGCTCAAAGCATAAAG
CAACAGTGGAATGGATAACAGAGTTGAAGAAGGCAGTAGCAAAGGCTGGTAAAAAGGGTTGCGG
TTCTCGTTTTGCTAAATCACTTGCTTCTGAGCTCTCAGCACTTAGAGTAGAAAGAGAACGAGAA
AGAGATCTGTTGAAGAAGGAAAACATAAGCCTCAAGATTCAACTAAGGAATACTGCTGAAGCTG
TTCATACTGCTGGAGAAGTTCTTGTTAGACTCAGAGAAGCCGAACAATCAGCATCAGCTGCTGA
G
Conservation Information
Conserved circRNAs NA
PMCS 0.120258125
Functional Information
Coding potential Y
Potential coding position 7034308-7036230(+)
Potential amino acid sequence MLPKIDNDEEEITVDEDDFKELHLQIKSLRGSFNQKLKKFPVNRDSVNSSFVTAFGESELMDDD
EICSEEVEVEENDFGESLEEHDSAATVCKSSEKSRIEEFVSENSISISPCRQSLILQEPIQSES
PKFRDSLRKSIALSSSCLRNQNSLAKSIKSTCFAESQHIRSSLRGSKIFTGSTESLAASLRRGL
DIIDNPMNPASNRCSVSLSSDNLTMQPPTDDRLPLSPLCPTCRICSSKLPSVVEGDGYHMEGVL
EKQQELEKLCSEQAAKIEQLTRLVGQHKLQTEDETEKLMGASNGERLPSANENQLLSCITETYD
VKQISDDDSKKTDFDIGEKEALLKEIEDLKKKLQTPVTMSTNELRSSLLARSFQLRSKNAEKDI
EEERLRCTEMESEWISLTDEFRVEIETQRTRAEKAEAQLKQEKLSSEELEDALRRAVLGHARFV
EHYTELQEKYNDLCSKHKATVEWITELKKAVAKAGKKGCGSRFAKSLASELSALRVERERERDL
LKKENISLKIQLRNTAEAVHTAGEVLVRLREAEQSASAAEEELSKVKADACHSVGSKNDYFGAK
NARESLNQLRVSLNRSLMLPKIDNDEEEITVDEDDFKELHLQIKSLRGSFNQKLKKFPVNRDSV
NSSFVTAFGESELMDDDEICSEEVEVEENDFGESLEEHDSAATVCKSSEKSRIEEFVSENSISI
SPCRQSLILQEPIQSESPKFRDSLRKSIALSSSCLRNQNSLAKSIKSTCFAESQHIRSSLRGSK
IFTGSTESLAASLRRGLDIIDNPMNPASNRCSVSLSSDNLTMQPPTDDRLPLSPLCPTCRICSS
KLPSVVEGDGYHMEGVLEKQQELEKLCSEQAAKIEQLTRLVGQHKLQTEDETEKLMGASNGERL
PSANENQLLSCITETYDVKQISDDDSKKTDFDIGEKEALLKEIEDLKKKLQTPVTMSTNELRSS
LLARSFQLRSKNAEKDIEEERLRCTEMESEWISLTDEFRVEIETQRTRAEKAEAQLKQEKLSSE
ELEDALRRAVLGHARFVEHYTELQEKYNDLCSKHKATVEWITELKKAVAKAGKKGCGSRFAKSL
ASELSALRVERERERDLLKKENISLKIQLRNTAEAVHTAGEVLVRLREAEQSASAAEEELSKVK
ADACHSVGSKNDYFGAKNARESLNQLRVSLNRSLMLPKIDNDEEEITVDEDDFKELHLQIKSLR
GSFNQKLKKFPVNRDSVNSSFVTAFGESELMDDDEICSEEVEVEENDFGESLEEHDSAATVCKS
SEKSRIEEFVSENSISISPCRQSLILQEPIQSESPKFRDSLRKSIALSSSCLRNQNSLAKSIKS
TCFAESQHIRSSLRGSKIFTGSTESLAASLRRGLDIIDNPMNPASNRCSVSLSSDNLTMQPPTD
DRLPLSPLCPTCRICSSKLPSVVEGDGYHMEGVLEKQQELEKLCSEQAAKIEQLTRLVGQHKLQ
TEDETEKLMGASNGERLPSANENQLLSCITETYDVKQISDDDSKKTDFDIGEKEALLKEIEDLK
KKLQTPVTMSTNELRSSLLARSFQLRSKNAEKDIEEERLRCTEMESEWISLTDEFRVEIETQRT
RAEKAEAQLKQEKLSSEELEDALRRAVLGHARFVEHYTELQEKYNDLCSKHKATVEWITELKKA
VAKAGKKGCGSRFAKSLASELSALRVERERERDLLKKENISLKIQLRNTAEAVHTAGEVLVRLR
EAEQSASAAEEELSKVKADACHSVGSKNDYFGAKNARESLNQLRVSLNRSLMLPKIDNDEEEIT
VDEDDFKELHLQIKSLRGSFNQKLKKFPVNRDSVNSSFVTAFGESELMDDDEICSEEVEVEEND
FGESLEEHDSAATVCKSSEKSRIEEFVSENSISISPCRQSLILQEPIQSESPKFRDSLRKSIAL
SSSCLRNQNSLAKSIKSTCFAESQHIRSSLRGSKIFTGSTESLAASLRRGLDIIDNPMNPASNR
CSVSLSSDNLTMQPPTDDRLPLSPLCPTCRICSSKLPSVVEGDGYHMEGVLEKQQELEKLCSEQ
AAKIEQLTRLVGQHKLQTEDETEKLMGASNGERLPSANENQLLSCITETYDVKQISDDDSKKTD
FDIGEKEALLKEIEDLKKKLQTPVTMSTNELRSSLLARSFQLRSKNAEKDIEEERLRCTEMESE
WISLTDEFRVEIETQRTRAEKAEAQLKQEKLSSEELEDALRRAVLGHARFVEHYTELQEKYNDL
CSKHKATVEWITELKKAVAKAGKKGCGSRFAKSLASELSALRVERERERDLLKKENISLKIQLR
NTAEAVHTAGEVLVRLREAEQSASAAE(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017