Detail information of AT2G14170_circ_g.10


General Information
CircRNA Name AT2G14170_circ_g.10
ID in PlantcircBase ath_circ_013314
Alias NA
Organism Arabidpsis thaliana
Position chr2: 5980687-5981406  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene AT2G14170
Parent gene annotation Methylmalonate-semialdehyde dehydrogenase
Parent gene strand -
Alternative splicing AT2G14170_circ_g.4 AT2G14170_circ_g.5 AT2G14170_circ_g.6 AT2G14170_circ_g.7 AT2G14170_circ_g.8 AT2G14170_circ_g.9
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G14170.1:4
AT2G14170.2:4
AT2G14170.3:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATAGGACTCATAAGAGAGTTTGCTTACAGGGTTTATAACATCGATAAACGAAGATGATTGAGA
CTCAACAAAAGAACCTCCAATAAGATTTGGTACTCTccataaaggaatcatggctggaaagtta
aaaggacaaatgccagcacaaacacctaatggctctctaatactatatgtatcaactccgttcg
acacattg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 468
Transcript exons: 5980687-5980841,5980938-5981016,5981085-5981246,5981335-
5981406
CCATAAAGGAATCATGGCTGGAAAGTTAAAAGGACAAATGCCAGCACAAACACCTAATGGCTCT
CTAATACTATATGTATCAACTCCGTTCGACACATTGGGGAGATATTCACCCATCTGTAAGGTTG
CCATTCCACACGCATGCTCCACAACCTCTAACCCACGGAAGATATCACCATGTGAATCCTTTAA
AGTCTTCCCTTGCTCGGTTGTGATGTTCATAGCAAGTTTATCCATATTCTTGCGTATAAGCTCT
TGAAACTTTAGCATAACACGCTGCCGGGTAGTAATCGGCGTGTTTCTCCACAACGGAAACGCTT
GCTTCGCAGCGGATACCGCAGCTTTAAACTCTTCATTAGTAGTCAATGGAACTTTAGATACAAC
CTCTTGTGTAGCAGGGTTTATAACATCGATAAACGAAGATGATTGAGACTCAACAAAAGAACCT
CCAATAAGATTTGGTACTCT

Genomic sequence CCATAAAGGAATCATGGCTGGAAAGTTAAAAGGACAAATGCCAGCACAAACACCTAATGGCTCT
CTAATACTATATGTATCAACTCCGTTCGACACATTGGGGAGATATTCACCCATCTGTAAGGTTG
CCATTCCACACGCATGCTCCACAACCTCTGCGTAAGAAACCATGTACCAAAAATAAGCACTAAG
GTTCTCCTCTTCTTGTCAATCATATAATCAAACCTACAATACATAAATAAAATACTAACCTAAC
CCACGGAAGATATCACCATGTGAATCCTTTAAAGTCTTCCCTTGCTCGGTTGTGATGTTCATAG
CAAGTTTATCCTACAGAAAAATCAAAACTTTCAGCCAAGCACATATCAAGATCATAGCAAACTA
AACCAGGTAGCTACCATATTCTTGCGTATAAGCTCTTGAAACTTTAGCATAACACGCTGCCGGG
TAGTAATCGGCGTGTTTCTCCACAACGGAAACGCTTGCTTCGCAGCGGATACCGCAGCTTTAAA
CTCTTCATTAGTAGTCAATGGAACTTTAGATACAACCTCTTGTGTAGCCTAATAATAGCAAATC
AGAATTTACTTCAAAGTTCAAACCTTTAAGTAATCAAACAAGAGTATAGGACTCATAAGAGAGT
TTGCTTACAGGGTTTATAACATCGATAAACGAAGATGATTGAGACTCAACAAAAGAACCTCCAA
TAAGATTTGGTACTCT
Conservation Information
Conserved circRNAs NA
PMCS 0.399954655
Functional Information
Coding potential Y
Potential coding position 5981121-5980689(-)
Potential amino acid sequence MLKFQELIRKNMDKLAMNITTEQGKTLKDSHGDIFRGLEVVEHACGMATLQMGEYLPNVSNGVD
TYSIREPLGVCAGICPFNFPAMIPLWRVPNLIGGSFVESQSSSFIDVINPATQEVVSKVPLTTN
EEFKAAVSAAKQAFPLWRNTPITTRQRVMLKFQELIRKNMDKLAMNITTEQGKTLKDSHGDIFR
GLEVVEHACGMATLQMGEYLPNVSNGVDTYSIREPLGVCAGICPFNFPAMIPLWRVPNLIGGSF
VESQSSSFIDVINPATQEVVSKVPLTTNEEFKAAVSAAKQAFPLWRNTPITTRQRVMLKFQELI
RKNMDKLAMNITTEQGKTLKDSHGDIFRGLEVVEHACGMATLQMGEYLPNVSNGVDTYSIREPL
GVCAGICPFNFPAMIPLWRVPNLIGGSFVESQSSSFIDVINPATQEVVSKVPLTTNEEFKAAVS
AAKQAFPLWRNTPITTRQRVMLKFQELIRKNMDKLAMNITTEQGKTLKDSHGDIFRGLEVVEHA
CGMATLQMGEYLPNVSNGVDTYSIREPLGVCAGICPFNFPAMIPLW(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017