Plant Circular RNA Database

Detail information of Csa4G325540_circ_g.3

			
						 General Information
					
						CircRNA Name
						Csa4G325540_circ_g.3
					
						ID in PlantcircBase
						csa_circ_002609
					
						Alias
						Chr4:13208914_13212817
					
						Organism
						
							Cucumis sativus						
					
						Position
						
							chrChr4: 13208914-13212817  JBrowse»						
					
						Reference genome
						
							Cucumis sativus v1.5						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRI2
					
						Parent gene
						
							Csa4G325540						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						-
					
						Alternative splicing
						
							Csa4G325540_circ_g.4 Csa4G325540_circ_g.5 Csa4G325540_circ_g.6 Csa4G325540_circ_g.7 						
					
						Support reads
						NA
					
						Tissues
						leaf,root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Csa4G325540.1:7

General Information
CircRNA Name	Csa4G325540_circ_g.3
ID in PlantcircBase	csa_circ_002609
Alias	Chr4:13208914_13212817
Organism	Cucumis sativus
Position	chrChr4: 13208914-13212817 JBrowse»
Reference genome	Cucumis sativus v1.5
Type	e-circRNA
Identification method	CIRI2
Parent gene	Csa4G325540
Parent gene annotation	NA
Parent gene strand	-
Alternative splicing	Csa4G325540_circ_g.4 Csa4G325540_circ_g.5 Csa4G325540_circ_g.6 Csa4G325540_circ_g.7
Support reads	NA
Tissues	leaf,root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Csa4G325540.1:7

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AATGGAAGAGAACCCGTTCAGTCTTTGCATACTTGCGACATGTACTACAAAGCTTTTTTACCTC
TTCCACAGTGGGATCCAGCTGAACTTTATAGCGAGCctgaaggacaataggtagctgttctgga
ggtttcttgttttcggatccatgatcaagccatacctcaaaagctgtcagctgctcggtgaaaa
atggactt

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 900
Transcript exons: 13208914-13209015,13210014-13210092,13210178-13210322,13
210397-13210551,13212180-13212322,13212464-13212580,1321
2659-13212817
CTGAAGGACAATAGGTAGCTGTTCTGGAGGTTTCTTGTTTTCGGATCCATGATCAAGCCATACC
TCAAAAGCTGTCAGCTGCTCGGTGAAAAATGGACTTGGCTGAAACTCTAAGTTGGGGTCTTCAA
CCAATGCTGGAAGTTGAGAAAGACAAATCTCGGCAGCCATGTCCCATGCATCCCACATGTGATG
CTGATGGGTTGGAGGTAACATTGGATGTGAAATTGGTGAACAATTTGCAGACCGCATAATCCGC
TCAGCAAGCAAAAAATTTCTGAACAGACTGGCAACTAACAAATCCTGTCTGAACAACCTTTGAA
ATAGATCATGTGGAAGAACATTCCATGCAATTGTATCAGTGACAGCTGTGAAAATCCAATTCAA
TTCCCCAAGAAGTGTCTTCCGATCAGTTTGCCGACCAGGTATTTTGTCTATCAATGAATCATCG
AGTGACTCGCGGAGCAATGAACGTTTGCAAAACCATCTCAAGGCCATCTTGATTGGTGTTGTAA
GGCAAGAGGTAAAAACATCTGCAGGAAATTCAGCTCTTTGGGGCAGTGTTTCGTGTGATTCACA
TGCTGCAAGCAAAATGCAATCCCTTGTTGATCCAGAGGGATCGTGAAGCTCGGTGAAGGCATTG
ACTATCATCCCAGCAGCAGAACAGTCGAACACATAAATGGAAGGTGTCTTCAACCACGAATCCA
GATCACTAATAGGTAAGGGGATATACTGGGTATAACTCTTGTTAAAAAGCCAAATTTCACCACT
AGCTGTTGGCTTTGGAACACCATGTCCGTTATAATGGAAGAGAACCCGTTCAGTCTTTGCATAC
TTGCGACATGTACTACAAAGCTTTTTTACCTCTTCCACAGTGGGATCCAGCTGAACTTTATAGC
GAGC
						
					

						Genomic sequence
						
							CTGAAGGACAATAGGTAGCTGTTCTGGAGGTTTCTTGTTTTCGGATCCATGATCAAGCCATACC
TCAAAAGCTGTCAGCTGCTCGGTGAAAAATGGACTTGGCTAGAACATTACAGAAAACAAAATTT
TAATTAAAGATTTAAAGGATAACTTTTAAGCAATAAACTTTTGAAATGAATGAAAGAAGTTTAA
AAAAATGTGACAATAATTTTAAATAATACTCCTTGGGTGTTGAAAACATCAGCCCTATTTTTGG
ATCCATTTCCTTATCCCATTTAAAAATACTTAATTGGCTTAGTTTATTGACTTTTCTAAACTTT
GATTTAAGGTAGTGGAAGGGAGATTTGGTCGACATGGCTGTAGCATTTAAATTGATGGGCTCCA
AGAGTTATTAATTAAGGCTGACAGAAACTAACCATGTTGGACACTAAGAAAGGAAGCAAAAGTG
CCTGGGAAAATATTAAAATCATTCATTCACATAGCTTGTCTTTGTGATCTAAAAAGAAAGGTTA
CAGAATAGATACCCCAAGTTAACCTTGAATCCTTCTCCTTGCTCTCATATTTGGGAGAAATGGA
CTAGAATGCTATCTATTTCTAGATTTCCTTTAGGAAGAAAATTTGAAGTCTGCTATTCAATTCT
TATGGGTTTCATTTTGTATGGAAATTTACTTAAGTTGCTACATGACCACCCTTTTAAGATAAAT
ATCTAAGAATCTTAAAATGATTTCTAAATGCTAACAAATCAATACTTAAGAACATTTAGAAAGA
AATAATAAATTATTCCAGAGAAAGGCAGAACATCAGGGAGAAATGTTTGAATTAGCAAATTGTC
ATGTTTCATTTTGAATTCATGTTGGGTAACATTGATGTATCATTTAGCATCTACAGGCCATCCC
TATATAATTAACTAACATAGGGGTGGCATTTTGTGAGTTCAATTGGAGAGCCTGACCTTGTATG
TAATATAAAATCTAATGGATCTCCCTCTATAACTTTCACTGGTAAATAAAATTAGGTTTGTTGC
CTTCAAGGTAAAGACACTTACACATACCAAGATCTAACCGTTGATACAATAAAAACACGTGTTA
AGAGAAAATGACCTGAAACTCTAAGTTGGGGTCTTCAACCAATGCTGGAAGTTGAGAAAGACAA
ATCTCGGCAGCCATGTCCCATGCATCCCTGAAAGAAGCAGAACAACTAGACAGGTCAGTCAATG
AACCAATTGAACAAACAGACCTAATAATCAAAGTTTCTCAAACTCTACCACATGTGATGCTGAT
GGGTTGGAGGTAACATTGGATGTGAAATTGGTGAACAATTTGCAGACCGCATAATCCGCTCAGC
AAGCAAAAAATTTCTGAACAGACTGGCAACTAACAAATCCTGTCTGAACAACCTTTGAAATAGA
TCTGCACGAAGAAAACATATTAGCTATGATGAGAAAGCAAAAGGACGGCATTTGTTAAGTAAAT
CTGAAAGCTACCATGTGGAAGAACATTCCATGCAATTGTATCAGTGACAGCTGTGAAAATCCAA
TTCAATTCCCCAAGAAGTGTCTTCCGATCAGTTTGCCGACCAGGTATTTTGTCTATCAATGAAT
CATCGAGTGACTCGCGGAGCAATGAACGTTTGCAAAACCTGAGGGACAAGATCCAATGATAAGA
GAGTATCCCGAAAACCATGAAAGTCCAATACTTCGTAAACAAACCACAAAAACAGAAAATTGAT
TAAGAATAGAAATTGCAATTTGCATGTAGAGGAAGACAAGAGACTGACCCAATACATGTAAATT
TCCAAAACTAAAATTATTTTCAAAATATAGAAGCGCATAAGGGACAGTTATAAACATAGTAAAT
CCTGAAGTGCTAGCTATTCAAACAATCTTTGATTCAAAATTGAATTCTTTTTTAATGAGAAACA
TTCAAAAGAATTTCATTGAGAAGAAATTACAAAATTCAATCCCCTAAATTGAAGCATGTACCAG
ATGATATTCACATAGGAATTAATTGTATAGATCAAGTTCATTACTAAATATCACTGTTCTAGAT
GAAAAGGGAAAAAAATAACATAGTTTTTTAATAAAGAACCAAACACTGAAAGAAGATAATAACG
AGAAGATAACAACGGAGATTCTAGAAAACAAGCCACAAAAAAAGGAAAGTCCCATTAAGGCAAG
GAACTTCAATCATAGAACCCAACAAGGTACCAAACATCCCAAGGACTACTCTCCAGATCTCTTA
AGGCTCTATCATTTTTCCTCCAAAGACTTCACAATAAAGCACAAACCCCAGCTTACCAAACAAA
CCTCCATTAATCACAAAAAAGAGGATGAATGAGGAACCCATCAATCATCTCTCTTAATCTCTGT
GTTTAGCAAGCTAAAACGCGTTGAAGAAAAGTAATTCCAGATAAACTAACCAAACCCACAACTC
TAGAAGATGTTATCCAGATTTTCCTCAAATTTCTGATAAAAGATAAAACAAAATGGCAGTATCA
AGGAGGAAAACTTCCTCAAAAGCCGAGTAAGAGTATTAACTCTTCCACGAATAGCCTTTTAGAC
AAAGTACTTAAGACTTTCACGTTCTATAAAGAAGAAAAGGCATACTTGCTTGATGGAGAAAGGT
TCAACAAGCAATGAAAAGAAGATCAACAACAAAATCCCTTAGAAAGGTCAAGGCTCCAAGGACA
AAAGCCCCTCCTCCGCGGTCTAAACTCATACTCCCCAATCAAAGACAAGAGAACCATGATATCA
ATCATTTCCCCATCGGTAAATGATGACAAAACCAAACCAATAAAGAGCAAGAGCTCCCAGGACG
AACAACAACATCAACCATTGACCAAATTTTCATAGAATTCAGGTAGTATCAACAATAATACAAT
GTAGTAACATAAATTAGTAACCATTGAATTCTTGAGAACCCTTCAACTTTTATACATTTGAATT
TGACAACAAATAATTCAAATTTATTTCATAGGTATATTGAACCTTTAGCTATTTTCCATTGTAG
ATTTATTTATGCTTGCAGTTATATCATATTCGAGAAAAGTCTGCCCTAGTCTACATAGGTCATG
CAGTTGAAAAACCAAACTAACGGTTCTCAAATTTATAAATTTAGACCTAATCTTCAAAACTTCA
ACAGTGTAGGTCATAAATATTTTTTTCTGTGTTTCATAAACAAAGTGATGACTAGTTAACATCT
CAGATTCAGAGACACTTCAGAATATAAAGGTGAATTGCTCAAGATAAATAATGAGAATAAGTTC
ACCATCTCAAGGCCATCTTGATTGGTGTTGTAAGGCAAGAGGTAAAAACATCTGCAGGAAATTC
AGCTCTTTGGGGCAGTGTTTCGTGTGATTCACATGCTGCAAGCAAAATGCAATCCCTTGTTGAT
CCAGAGGGATCGTGAAGCTATAAAAAGAATGATATTGATGTAATTAAGAGTAGGAACATCGTGA
ATCTTATTAATAGAAAATGAAAAATATCACTCGATGATGATAAATTAGTGCAGATAAAATAAAT
AGAACTAAAAACACAGTTGACAGTAAGTACCTCGGTGAAGGCATTGACTATCATCCCAGCAGCA
GAACAGTCGAACACATAAATGGAAGGTGTCTTCAACCACGAATCCAGATCACTAATAGGTAAGG
GGATATACTGGGTATAACTCTGCACCATGAAAAATCGTGAGAATAAGACAATAACAAACATTGA
CAAAAAAATAGTATAATGTATGAATATATAGACCTTGTTAAAAAGCCAAATTTCACCACTAGCT
GTTGGCTTTGGAACACCATGTCCGTTATAATGGAAGAGAACCCGTTCAGTCTTTGCATACTTGC
GACATGTACTACAAAGCTTTTTTACCTCTTCCACAGTGGGATCCAGCTGAACTTTATAGCGAGC
						
					

			
		

Sequences
Splice junction sequence	AATGGAAGAGAACCCGTTCAGTCTTTGCATACTTGCGACATGTACTACAAAGCTTTTTTACCTC TTCCACAGTGGGATCCAGCTGAACTTTATAGCGAGCctgaaggacaataggtagctgttctgga ggtttcttgttttcggatccatgatcaagccatacctcaaaagctgtcagctgctcggtgaaaa atggactt
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 900 Transcript exons: 13208914-13209015,13210014-13210092,13210178-13210322,13 210397-13210551,13212180-13212322,13212464-13212580,1321 2659-13212817 CTGAAGGACAATAGGTAGCTGTTCTGGAGGTTTCTTGTTTTCGGATCCATGATCAAGCCATACC TCAAAAGCTGTCAGCTGCTCGGTGAAAAATGGACTTGGCTGAAACTCTAAGTTGGGGTCTTCAA CCAATGCTGGAAGTTGAGAAAGACAAATCTCGGCAGCCATGTCCCATGCATCCCACATGTGATG CTGATGGGTTGGAGGTAACATTGGATGTGAAATTGGTGAACAATTTGCAGACCGCATAATCCGC TCAGCAAGCAAAAAATTTCTGAACAGACTGGCAACTAACAAATCCTGTCTGAACAACCTTTGAA ATAGATCATGTGGAAGAACATTCCATGCAATTGTATCAGTGACAGCTGTGAAAATCCAATTCAA TTCCCCAAGAAGTGTCTTCCGATCAGTTTGCCGACCAGGTATTTTGTCTATCAATGAATCATCG AGTGACTCGCGGAGCAATGAACGTTTGCAAAACCATCTCAAGGCCATCTTGATTGGTGTTGTAA GGCAAGAGGTAAAAACATCTGCAGGAAATTCAGCTCTTTGGGGCAGTGTTTCGTGTGATTCACA TGCTGCAAGCAAAATGCAATCCCTTGTTGATCCAGAGGGATCGTGAAGCTCGGTGAAGGCATTG ACTATCATCCCAGCAGCAGAACAGTCGAACACATAAATGGAAGGTGTCTTCAACCACGAATCCA GATCACTAATAGGTAAGGGGATATACTGGGTATAACTCTTGTTAAAAAGCCAAATTTCACCACT AGCTGTTGGCTTTGGAACACCATGTCCGTTATAATGGAAGAGAACCCGTTCAGTCTTTGCATAC TTGCGACATGTACTACAAAGCTTTTTTACCTCTTCCACAGTGGGATCCAGCTGAACTTTATAGC GAGC
Genomic sequence	CTGAAGGACAATAGGTAGCTGTTCTGGAGGTTTCTTGTTTTCGGATCCATGATCAAGCCATACC TCAAAAGCTGTCAGCTGCTCGGTGAAAAATGGACTTGGCTAGAACATTACAGAAAACAAAATTT TAATTAAAGATTTAAAGGATAACTTTTAAGCAATAAACTTTTGAAATGAATGAAAGAAGTTTAA AAAAATGTGACAATAATTTTAAATAATACTCCTTGGGTGTTGAAAACATCAGCCCTATTTTTGG ATCCATTTCCTTATCCCATTTAAAAATACTTAATTGGCTTAGTTTATTGACTTTTCTAAACTTT GATTTAAGGTAGTGGAAGGGAGATTTGGTCGACATGGCTGTAGCATTTAAATTGATGGGCTCCA AGAGTTATTAATTAAGGCTGACAGAAACTAACCATGTTGGACACTAAGAAAGGAAGCAAAAGTG CCTGGGAAAATATTAAAATCATTCATTCACATAGCTTGTCTTTGTGATCTAAAAAGAAAGGTTA CAGAATAGATACCCCAAGTTAACCTTGAATCCTTCTCCTTGCTCTCATATTTGGGAGAAATGGA CTAGAATGCTATCTATTTCTAGATTTCCTTTAGGAAGAAAATTTGAAGTCTGCTATTCAATTCT TATGGGTTTCATTTTGTATGGAAATTTACTTAAGTTGCTACATGACCACCCTTTTAAGATAAAT ATCTAAGAATCTTAAAATGATTTCTAAATGCTAACAAATCAATACTTAAGAACATTTAGAAAGA AATAATAAATTATTCCAGAGAAAGGCAGAACATCAGGGAGAAATGTTTGAATTAGCAAATTGTC ATGTTTCATTTTGAATTCATGTTGGGTAACATTGATGTATCATTTAGCATCTACAGGCCATCCC TATATAATTAACTAACATAGGGGTGGCATTTTGTGAGTTCAATTGGAGAGCCTGACCTTGTATG TAATATAAAATCTAATGGATCTCCCTCTATAACTTTCACTGGTAAATAAAATTAGGTTTGTTGC CTTCAAGGTAAAGACACTTACACATACCAAGATCTAACCGTTGATACAATAAAAACACGTGTTA AGAGAAAATGACCTGAAACTCTAAGTTGGGGTCTTCAACCAATGCTGGAAGTTGAGAAAGACAA ATCTCGGCAGCCATGTCCCATGCATCCCTGAAAGAAGCAGAACAACTAGACAGGTCAGTCAATG AACCAATTGAACAAACAGACCTAATAATCAAAGTTTCTCAAACTCTACCACATGTGATGCTGAT GGGTTGGAGGTAACATTGGATGTGAAATTGGTGAACAATTTGCAGACCGCATAATCCGCTCAGC AAGCAAAAAATTTCTGAACAGACTGGCAACTAACAAATCCTGTCTGAACAACCTTTGAAATAGA TCTGCACGAAGAAAACATATTAGCTATGATGAGAAAGCAAAAGGACGGCATTTGTTAAGTAAAT CTGAAAGCTACCATGTGGAAGAACATTCCATGCAATTGTATCAGTGACAGCTGTGAAAATCCAA TTCAATTCCCCAAGAAGTGTCTTCCGATCAGTTTGCCGACCAGGTATTTTGTCTATCAATGAAT CATCGAGTGACTCGCGGAGCAATGAACGTTTGCAAAACCTGAGGGACAAGATCCAATGATAAGA GAGTATCCCGAAAACCATGAAAGTCCAATACTTCGTAAACAAACCACAAAAACAGAAAATTGAT TAAGAATAGAAATTGCAATTTGCATGTAGAGGAAGACAAGAGACTGACCCAATACATGTAAATT TCCAAAACTAAAATTATTTTCAAAATATAGAAGCGCATAAGGGACAGTTATAAACATAGTAAAT CCTGAAGTGCTAGCTATTCAAACAATCTTTGATTCAAAATTGAATTCTTTTTTAATGAGAAACA TTCAAAAGAATTTCATTGAGAAGAAATTACAAAATTCAATCCCCTAAATTGAAGCATGTACCAG ATGATATTCACATAGGAATTAATTGTATAGATCAAGTTCATTACTAAATATCACTGTTCTAGAT GAAAAGGGAAAAAAATAACATAGTTTTTTAATAAAGAACCAAACACTGAAAGAAGATAATAACG AGAAGATAACAACGGAGATTCTAGAAAACAAGCCACAAAAAAAGGAAAGTCCCATTAAGGCAAG GAACTTCAATCATAGAACCCAACAAGGTACCAAACATCCCAAGGACTACTCTCCAGATCTCTTA AGGCTCTATCATTTTTCCTCCAAAGACTTCACAATAAAGCACAAACCCCAGCTTACCAAACAAA CCTCCATTAATCACAAAAAAGAGGATGAATGAGGAACCCATCAATCATCTCTCTTAATCTCTGT GTTTAGCAAGCTAAAACGCGTTGAAGAAAAGTAATTCCAGATAAACTAACCAAACCCACAACTC TAGAAGATGTTATCCAGATTTTCCTCAAATTTCTGATAAAAGATAAAACAAAATGGCAGTATCA AGGAGGAAAACTTCCTCAAAAGCCGAGTAAGAGTATTAACTCTTCCACGAATAGCCTTTTAGAC AAAGTACTTAAGACTTTCACGTTCTATAAAGAAGAAAAGGCATACTTGCTTGATGGAGAAAGGT TCAACAAGCAATGAAAAGAAGATCAACAACAAAATCCCTTAGAAAGGTCAAGGCTCCAAGGACA AAAGCCCCTCCTCCGCGGTCTAAACTCATACTCCCCAATCAAAGACAAGAGAACCATGATATCA ATCATTTCCCCATCGGTAAATGATGACAAAACCAAACCAATAAAGAGCAAGAGCTCCCAGGACG AACAACAACATCAACCATTGACCAAATTTTCATAGAATTCAGGTAGTATCAACAATAATACAAT GTAGTAACATAAATTAGTAACCATTGAATTCTTGAGAACCCTTCAACTTTTATACATTTGAATT TGACAACAAATAATTCAAATTTATTTCATAGGTATATTGAACCTTTAGCTATTTTCCATTGTAG ATTTATTTATGCTTGCAGTTATATCATATTCGAGAAAAGTCTGCCCTAGTCTACATAGGTCATG CAGTTGAAAAACCAAACTAACGGTTCTCAAATTTATAAATTTAGACCTAATCTTCAAAACTTCA ACAGTGTAGGTCATAAATATTTTTTTCTGTGTTTCATAAACAAAGTGATGACTAGTTAACATCT CAGATTCAGAGACACTTCAGAATATAAAGGTGAATTGCTCAAGATAAATAATGAGAATAAGTTC ACCATCTCAAGGCCATCTTGATTGGTGTTGTAAGGCAAGAGGTAAAAACATCTGCAGGAAATTC AGCTCTTTGGGGCAGTGTTTCGTGTGATTCACATGCTGCAAGCAAAATGCAATCCCTTGTTGAT CCAGAGGGATCGTGAAGCTATAAAAAGAATGATATTGATGTAATTAAGAGTAGGAACATCGTGA ATCTTATTAATAGAAAATGAAAAATATCACTCGATGATGATAAATTAGTGCAGATAAAATAAAT AGAACTAAAAACACAGTTGACAGTAAGTACCTCGGTGAAGGCATTGACTATCATCCCAGCAGCA GAACAGTCGAACACATAAATGGAAGGTGTCTTCAACCACGAATCCAGATCACTAATAGGTAAGG GGATATACTGGGTATAACTCTGCACCATGAAAAATCGTGAGAATAAGACAATAACAAACATTGA CAAAAAAATAGTATAATGTATGAATATATAGACCTTGTTAAAAAGCCAAATTTCACCACTAGCT GTTGGCTTTGGAACACCATGTCCGTTATAATGGAAGAGAACCCGTTCAGTCTTTGCATACTTGC GACATGTACTACAAAGCTTTTTTACCTCTTCCACAGTGGGATCCAGCTGAACTTTATAGCGAGC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.497470221

Conservation Information
Conserved circRNAs	NA
PMCS	0.497470221

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							13212489-13208916(-)
13208965-13212777(-)
						
						Potential amino acid sequence
						
							MIVNAFTELHDPSGSTRDCILLAACESHETLPQRAEFPADVFTSCLTTPIKMALRWFCKRSLLR
ESLDDSLIDKIPGRQTDRKTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFL
LAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPALVEDPNLEFQPSPFFTEQLT
AFEVWLDHGSENKKPPEQLPIVLQARYKVQLDPTVEEVKKLCSTCRKYAKTERVLFHYNGHGVP
KPTASGEIWLFNKSYTQYIPLPISDLDSWLKTPSIYVFDCSAAGMIVNAFTELHDPSGSTRDCI
LLAACESHETLPQRAEFPADVFTSCLTTPIKMALRWFCKRSLLRESLDDSLIDKIPGRQTDRKT
LLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLP
PTHQHHMWDAWDMAAEICLSQLPALVEDPNLEFQPSPFFTEQLTAFEVWLDHGSENKKPPEQLP
IVLQARYKVQLDPTVEEVKKLCSTCRKYAKTERVLFHYNGHGVPKPTASGEIWLFNKSYTQYIP
LPISDLDSWLKTPSIYVFDCSAAGMIVNAFTELHDPSGSTRDCILLAACESHETLPQRAEFPAD
VFTSCLTTPIKMALRWFCKRSLLRESLDDSLIDKIPGRQTDRKTLLGELNWIFTAVTDTIAWNV
LPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLS
QLPALVEDPNLEFQPSPFFTEQLTAFEVWLDHGSENKKPPEQLPIVLQARYKVQLDPTVEEVKK
LCSTCRKYAKTERVLFHYNGHGVPKPTASGEIWLFNKSYTQYIPLPISDLDSWLKTPSIYVFDC
SAAGMIVNAFTELHDPSGSTRDCILLAACESHETLPQRAEFPADVFTSCLTTPIKMALRWFCKR
SLLRESLDDSLIDKIPGRQTDRKTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLF
RNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPALVEDPNLEFQPSPFFT
EQLTAFEVWLDHGSENKKPPEQLPIVLQ
MDPKTRNLQNSYLLSFRLAIKFSWIPLWKR*
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						responsive to salt stress in root

Functional Information
Coding potential	Y
Potential coding position	13212489-13208916(-) 13208965-13212777(-)
Potential amino acid sequence	MIVNAFTELHDPSGSTRDCILLAACESHETLPQRAEFPADVFTSCLTTPIKMALRWFCKRSLLR ESLDDSLIDKIPGRQTDRKTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFL LAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPALVEDPNLEFQPSPFFTEQLT AFEVWLDHGSENKKPPEQLPIVLQARYKVQLDPTVEEVKKLCSTCRKYAKTERVLFHYNGHGVP KPTASGEIWLFNKSYTQYIPLPISDLDSWLKTPSIYVFDCSAAGMIVNAFTELHDPSGSTRDCI LLAACESHETLPQRAEFPADVFTSCLTTPIKMALRWFCKRSLLRESLDDSLIDKIPGRQTDRKT LLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLP PTHQHHMWDAWDMAAEICLSQLPALVEDPNLEFQPSPFFTEQLTAFEVWLDHGSENKKPPEQLP IVLQARYKVQLDPTVEEVKKLCSTCRKYAKTERVLFHYNGHGVPKPTASGEIWLFNKSYTQYIP LPISDLDSWLKTPSIYVFDCSAAGMIVNAFTELHDPSGSTRDCILLAACESHETLPQRAEFPAD VFTSCLTTPIKMALRWFCKRSLLRESLDDSLIDKIPGRQTDRKTLLGELNWIFTAVTDTIAWNV LPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLS QLPALVEDPNLEFQPSPFFTEQLTAFEVWLDHGSENKKPPEQLPIVLQARYKVQLDPTVEEVKK LCSTCRKYAKTERVLFHYNGHGVPKPTASGEIWLFNKSYTQYIPLPISDLDSWLKTPSIYVFDC SAAGMIVNAFTELHDPSGSTRDCILLAACESHETLPQRAEFPADVFTSCLTTPIKMALRWFCKR SLLRESLDDSLIDKIPGRQTDRKTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLF RNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPALVEDPNLEFQPSPFFT EQLTAFEVWLDHGSENKKPPEQLPIVLQ MDPKTRNLQNSYLLSFRLAIKFSWIPLWKR*
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	responsive to salt stress in root

			
						 Other Information
					
						References
						Zhu et al., 2019

circRNA

Detail information of Csa4G325540_circ_g.3

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