Plant Circular RNA Database

Detail information of Os02g0722800_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os02g0722800_circ_g.2
					
						ID in PlantcircBase
						osa_circ_016350
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 30017400-30024235  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os02g0722800						
					
						Parent gene annotation
						
							WD40 repeat-like domain containing protein. (Os02t0722800-01);Si
milar to Peptidase S26A, signal peptidase I; WD40-like. (Os02t07
22800-02)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os02g0722800_circ_g.1 Os02g0722800_circ_g.3 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0722800-01:8
Os02t0722800-02:3

General Information
CircRNA Name	Os02g0722800_circ_g.2
ID in PlantcircBase	osa_circ_016350
Alias	NA
Organism	Oryza sativa
Position	chr2: 30017400-30024235 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os02g0722800
Parent gene annotation	WD40 repeat-like domain containing protein. (Os02t0722800-01);Si milar to Peptidase S26A, signal peptidase I; WD40-like. (Os02t07 22800-02)
Parent gene strand	-
Alternative splicing	Os02g0722800_circ_g.1 Os02g0722800_circ_g.3
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0722800-01:8 Os02t0722800-02:3

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							CTGGATGGCAATTTCAATCTTTCCTGTAATTTGTGGTTTGCTGTCCTCATCAGGACCCTCATCA
ATCTTCCAAACATATATCCGACCATCTACACTTGCActttaaagtttgcgccaatggggtatgt
gttgcctcaacttgctgctgaatagcaacagtgtgttcagacattcctttctggaatgcgctat
cgacttgc

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							NA						
					
						Genomic sequence
						
							TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

Sequences
Splice junction sequence	CTGGATGGCAATTTCAATCTTTCCTGTAATTTGTGGTTTGCTGTCCTCATCAGGACCCTCATCA ATCTTCCAAACATATATCCGACCATCTACACTTGCActttaaagtttgcgccaatggggtatgt gttgcctcaacttgctgctgaatagcaacagtgtgttcagacattcctttctggaatgcgctat cgacttgc
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.109635623

Conservation Information
Conserved circRNAs	NA
PMCS	0.109635623

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							30024086-30017449(+)
30024141-30017402(+)
30023823-30024199(-)
						
						Potential amino acid sequence
						
							MRVPTDPWMVRFSIANNLDGNFNLSCNLWFAVLIRTLINLPNIYPTIYTCTLKFAPMGYVLPQL
AAE*(+)
MAISIFPVICGLLSSSGPSSIFQTYIRPSTLAL*(+)
MTTRLASGSKDGTVKIWDDRKPVPLSILKPHDGQAVYSVAFLTAPEHPDHINLVTAGPLNREVK
IWASANEGGVLLPSDSETWNCTQTLELVSSLEPRVEEAFFNQVTVLPQASIILLANAKKNAIYA
VHVEYGTDPASTRLDYIADFTVAMPILSLTGTHESQPGNDQVVQVYCVQTMAIQQYGLDLSLCS
PPTSETTGLGRDPSISRVHETPLEVVGAESSMPTSFTDSYSVGSPSKSSTVDQQSELDPKPSAP
PLTYTEGDGSVHLPSASLASNMDPSGSGSSLGNLEMDQPAFDYAMNRNVEPKILTRQDTPMPKD
NFGKDDPRDGRNDVTMLPNPHLMFKVGGNTTHLVTPSEIISGALSSAESNHVPKSDGVKIQDGT
SSGHQMAEVEPKHTNEHTFDQNLDLEVAQVVCENTKQAGSSEQTVKMISERSVTTDKYSVEESQ
TSCDRSISEHTGAADESVTKKPVEVPEKSDYSSASVEQSSSYTKKEKIMHPQASGQSSPSTSAF
NSTESSHEPPSSAYPPINSFPEVTTQGMLQQLIAMHKDLQKQLGTIVVAPLAKEGKRIEASLGR
TMEKSIKANLDALWVRIQEENAKREKAERERMQQMITLITNSISKDLPATLEKSLKKEISSLGP
VIARAITPIIEKCSASAVADSIQKVVGDRVVNQLDKSVSAKLEATVARQIQMQFHTSVKQTLQD
ALRASLEAFLVPAFEQSCKTMFEQVDSAFQKGMSEHTVAIQQQVEATHTPLAQTLKCKCRWSDI
CLED*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	30024086-30017449(+) 30024141-30017402(+) 30023823-30024199(-)
Potential amino acid sequence	MRVPTDPWMVRFSIANNLDGNFNLSCNLWFAVLIRTLINLPNIYPTIYTCTLKFAPMGYVLPQL AAE(+) MAISIFPVICGLLSSSGPSSIFQTYIRPSTLAL(+) MTTRLASGSKDGTVKIWDDRKPVPLSILKPHDGQAVYSVAFLTAPEHPDHINLVTAGPLNREVK IWASANEGGVLLPSDSETWNCTQTLELVSSLEPRVEEAFFNQVTVLPQASIILLANAKKNAIYA VHVEYGTDPASTRLDYIADFTVAMPILSLTGTHESQPGNDQVVQVYCVQTMAIQQYGLDLSLCS PPTSETTGLGRDPSISRVHETPLEVVGAESSMPTSFTDSYSVGSPSKSSTVDQQSELDPKPSAP PLTYTEGDGSVHLPSASLASNMDPSGSGSSLGNLEMDQPAFDYAMNRNVEPKILTRQDTPMPKD NFGKDDPRDGRNDVTMLPNPHLMFKVGGNTTHLVTPSEIISGALSSAESNHVPKSDGVKIQDGT SSGHQMAEVEPKHTNEHTFDQNLDLEVAQVVCENTKQAGSSEQTVKMISERSVTTDKYSVEESQ TSCDRSISEHTGAADESVTKKPVEVPEKSDYSSASVEQSSSYTKKEKIMHPQASGQSSPSTSAF NSTESSHEPPSSAYPPINSFPEVTTQGMLQQLIAMHKDLQKQLGTIVVAPLAKEGKRIEASLGR TMEKSIKANLDALWVRIQEENAKREKAERERMQQMITLITNSISKDLPATLEKSLKKEISSLGP VIARAITPIIEKCSASAVADSIQKVVGDRVVNQLDKSVSAKLEATVARQIQMQFHTSVKQTLQD ALRASLEAFLVPAFEQSCKTMFEQVDSAFQKGMSEHTVAIQQQVEATHTPLAQTLKCKCRWSDI CLED*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os02g0722800_circ_g.2

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