Detail information of BGIOSGA034959_circ_ag.1


General Information
CircRNA Name BGIOSGA034959_circ_ag.1
ID in PlantcircBase osi_circ_009334
Alias Chr11:4558512_4563176(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr11: 4305435-4310144  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGCATCACCCCCTCCTGCGTCGCCTTCACCGCCGACGACAGGTTCGTCGGCGACGCCGCCGAGA
ATCAGGCCGCCCTCAACCCCACCAACACCATCTTCGgaagtgaagcgactgatcggccgccggt
tcagcgataagtctgtacaagaggacatcaagctttggcctttcaaagtcattgctggccgtga
cgaccggc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAAGTGAAGCGACTGATCGGCCGCCGGTTCAGCGATAAGTCTGTACAAGAGGACATCAAGCTTT
GGCCTTTCAAAGTCATTGCTGGCCGTGACGACCGGCCAACGATCGTGGTCCGCCATGAGGGCAA
GGAGAAGCAGTTCGTCCCCGAGGAGATCTCCGCCATGGTGCTCTCCAAGCTGAGGGACGCCGCC
GTGGCCTACCTCGGCGAGCCGGTCACGGACGCCGTCATCACCGTCCCCGTCTACTTCAACAACG
CCCAGCGCGAGGCCACCCTCGACGCCGCCACCATCGCTGGCCTCAACGTCATGCGCATCATCAA
CGAGCCCTCCGCCGCCGCCCTCGCCTATGGCCTCGACAAGATGCCGCCGGCCAGCGGCGGTGCA
GGGAGGATGGTGCTCATCTTTGATCTTGGTGGCGGCACCCTGGATGTCTCCCTCCTTAACATTG
GTCATCCGGGCAACAACAACAGCAGCGACAGCGGCAGCTTCGAGTTCGAGGTGAAGGCCGTCGC
CGGCGACACTCACCTCGGCGGCGCCGACTTCGACAACGCGATTGTGAAGCACTGCATCAACGAG
TTCATCAGGAAGCACGGCGTGGCAGCAGAAGGCATCTGGAGCAACCAGAAGGCGATCAGGAGGC
TGAGGACCGCGTGCGAGAGAGCCAAGAGGATGCTGTCTTTCACGACGCTTGCCAGCATCGAGGT
CGACTCGCTTCACGACGGCATCGACTTCTGCGGCAAGATGAGCCGGTCCCGGTTCGAGGAGCTC
AACAAGGAGCTCTTCGGCAAGTGCGTCAAGGCCGTGAAGAAGTGCCTCGAGGACGCCAAGATGG
ACAAGAACGCCGTGGACGACGTCGTGCTCGTGGGCGGCTCCAGCCGCATCCCCAAGCTGCAGAG
CATGATCCACGACTTCTTCGACGAGAAAAAGCTCCGCAGGAACGTCAACCCCGACGAGGCCGTC
GCGTACGGCGCCGCCATCCAGGCCTCCGTCCTCAACGGCGACGCCGACGAAGCCGACGACAAGA
AGCAGGTGATGATCCTGCGCGACATCACGCCCCTCTCGCTGGGGATCGAGGTCGGTCTCGATCA
CACGATGAGCGTCGTGATCCCGAGGAACACCTTCATCCCGACCAAGAACGTGCGGCGTTACTCC
ACCATATTCGACAATCAGATCGCCGTGAGCATCAATGTGTTCGAAGGCGAGAGCGCGAGCATCC
TCCGCAACAACCTGCTCGGCAAGTTTGTGCTGTCCGGCATCCTCCCGGCGCCCAGGGGAGTGCC
CCAGATCGACGTCACGTTCGAGTTCGACGCCAATGGCGTCCTGCACGTGTCCGCGAAGGACATG
GGCACTGGGAGCAAGAACAACATCGCCATTACCAACCACAGCGGCCGGCTGAAGAAGGAGGACG
TCGAACGCATGGCGCGGGAGGCCAGGAGCTACAACAGGACCAGATCATCTCTAGCGTAAGTAAA
TCATACTCCCTCCGTTTCACAATGTAAGTCATTCTAACATTTTTTATATTCATATTGATGCTAA
TGAATCTAAACATATATATCTATCTAGATTCATTAATATTAATATGAATGTGGAAATTGCTAGA
ATGACTTATATTATGAAACGGAGGAAGTACATTATTATTGTTGTCTTGGTTTGGTTTTAATTTA
AGCAAATCATACTAGTGCTGTCTGTGACTTTTTGGTTTGGCAAATCATCTCTATGTTTGTATCT
GCAGGATAACTTCTGGGAACCTGGTGATCTTGGAATGATGTTCTGCTTCTGCACCTGCTTGCTG
GATGTCTTACATCTGCCCATCGAACTGATTTCAATGACGGGGAAAAGTTTGTGCTACTAAATTT
TTTTGCTAAAACTAATCTAGGTCTAGTGACTACTTATCTAAATGAGCTAATGCGGAAGATGATG
GCATACTGACGTGTGTTTGATGGAGCCATAATTAATCTTAAGTCGCATTTGGCGTTTGTAGATT
GTAGTCGTAGCAGAAATAGCCAGGAACTGGCATGCGCAAAATATATAGGCAGCTTCGCTGGTCG
GGTAGGTGCAGGGCGCCGGTGATGCAGAACATCGGCAAGATTGAGGGCGCAGCAACTGAACACC
GGCGATAAGATGATCAAACTCACCAACGCTATTAGTGTATTAGTGTTTTGAGGAGTGGAGGAAA
TATGTGTGTTTCTCAACCCACACGAGCCATGTTTTGTTTCTCCCGTTTTATAGTGCTAGGGAGT
GATAGGCGGCGGCTCCATTATATTTCGTTGACAGTTTAGCCACATGTGATCTGATCACAAAGTA
GGATCAAGTTTGAACTTTTATTCGTTTACTTAAATGATCTTTTATTCGTTTACTGAAATGAGTC
AAATACAAGTCCACTGTTCATAGTCAAAGATTACAAAAGGTCGTAAATTAACTTACAGCACAAC
TTTGTGAGTAATGATATATATATATATATATATATATATATATATACCACGTCACAAGTCGAGC
TAGCTCATTAACATTTTTTTGAGTCCAGCCGAGTCGAGTGAAGTTGGACAGTGTGGCGAGTCAT
TAACATTTTTATGAGTGGAGCCGAGTCGAGAGAGGTTGGACAGTGTGGCGAGGTCGTTCACTAG
TGGTTGATTTCACACGAGCTGTTCCCTACTTAATTTTCCTCTCTCACTACAGATATATTACTTG
GTACTCCCTACGATCCAAAATGTAACAACTTTTGGCTATTAATATGGACACGTATGCCCAGATT
CATAGTAAAAAATTGTTATATTTTGGAACGGAGGTAGTATGTTCTTCCATCGTCTCTCGTGTGT
CAATACAATCGAGGTAGCAATGATTGGTATGTTTCGACTTTCGACCGCCGCCATGGCCTCAATG
CTACGCTGCCACTCACGGCCTCGCTGCCTTGGTGCTCACCAAAACACCGCACCCCTCTAGAAGA
TGGCGCCGGTCAGCCCTGCTAGACTAGCCTCTCCATCCACTCCTCACTTCCCACTCCCGTCTGC
ACAAGCCTAGGATGTTGTGGCATTTCCCACCTCCCCTCATGTTCTCCATCTTCAGTAGCTCACT
TCATTGGGTTTGTCGCTGCCGTCCGCACCTCCTAACCCGATGGTCTCATTTGCCCCCACCGCTG
GCCCTACCCATCCCCGGTCTACATCCTCACAGCACCTACGGTGCCCCCCACTACCTTGCCGCCC
ACCCATCGCTGCTGGGTTGACCGCCACCCACGGTCATCTCTCTAGTGCTAGGGACACCCTCCTC
TTCCACCTCCAAAGCCCCTCCTATCCTGAAACCCTAAATTATAACCTCTTCATGTGATGCCAAC
GACGGAGAAGAGGACTTCACCGTTGCCAAAAAAAAGAGGACCTAGCCATTGCTGCAGCCACCAT
CAGGAAGGTCACCGTCACCGGTGTGTTCATCCGCACTTTCTTCCTCCTTACCCAAAACTAGGAT
GGTAGGTTGAAGGTTCACCTGAAACCTAGCAAACATATAAGTCATGTTTAAAAATTCTGTAATT
ATAAAATAAGTTACAATGAAATAAATGGTAATTAGATAATATTTTAATAACATGAATGGTTAAA
CATAGGTTCAAAAGTCAATGGTGTCACATATGAAGAAACAAAAGAGAGCATTAGATCTTCACCA
TTGTAATTTGGTTCCATCATGATCTATCAATGAAAATATTTTTTTTTTCTGCGATCAACATGGT
GGAGTAATTTCAACTTGGCCTCTTTTCAATACACTTTTTTTAAAACATTGAACAAATGTAGATG
CTCACAACACGCACAAGCTCACCCCGATAAACACGTGCACAGCCGCACACACTGCCCCTGTAAA
CACCTATGTAAGACATTTGCACTCGAATTCATTGTATTTATAAATTTTCTTAATTTCTACGTGA
ACTCACAGATTAACCACAACGGGTTTATACTTTTTTTATCCTATTAAATGAAATTTCAAAGACG
GGAGAGTTCTCTATTAATAGACTGATGAAATATATACCCTCTCCATTTTATAATATAAGGGATT
TTGCCTCTTATTATCCCACAATATATAGGATTTTGATGTACTACTTGTTATATCCATTAACTCC
AATTCAAATTTCTACCTACTTTAACCTCGCAATTACCTACTCACCACAAGCAAATATCATTTAA
TAGAGGTATTATAGTATTTTGTTACTAACCTTAATCTCACCCAAAAGGGAATAATCCCTTATAT
TATGGGATGGAGGGAGTAATAAATAGAAAATTCAAGAGCAAAAGCCACCGAAATATATATTAAT
TGATAGATTTCTCAACTTCATTGAGCCGTGGAAAGGGGACGCAGCTCCTCTGACAAGGGACGTG
GAGCCCTCACAGGTGGGGCCTACATCATGGACTATGGTCCTTGAAGAGGACGGTTCGTTCCTCG
TCCCATTTGACCCAAACGCCTCTGATTGCGGAGATCAGACGATGGCGGCCTCCAACACCAGCAA
GAAGGGCGGCGGCGGCGACGGCGGCGGTGGCGGAGGCCCGGCGATCGGCATCGACCTCGGGACG
ACCTACTCGTGCGCGGCGGTGAGGCGGCACAACCGCAGCGAGGTCATCACCAACGACCAGGGCA
ACCGCATCACCCCCTCCTGCGTCGCCTTCACCGCCGACGACAGGTTCGTCGGCGACGCCGCCGA
GAATCAGGCCGCCCTCAACCCCACCAACACCATCTTCG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021