Plant Circular RNA Database

Detail information of Os08g0345800_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os08g0345800_circ_g.1
					
						ID in PlantcircBase
						osa_circ_036821
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr8: 15667618-15670067  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os08g0345800						
					
						Parent gene annotation
						
							Similar to Glucose-1-phosphate adenylyltransferase small subunit
, chloroplast precursor (EC 2.7.7.27) (ADP-glucose synthase) (AD
P-glucose pyrophosphorylase) (AGPASE B) (Alpha-D-glucose-1-phosp
hate adenyl transferase). (Os08t0345800-01);Similar to Glucose-1
-phosphate adenylyltransferase. (Os08t0345800-02);Similar to Iso
form 2 of Glucose-1-phosphate adenylyltransferase small subunit,
 chloroplastic/amyloplastic. (Os08t0345800-03);Similar to Isofor
m 2 of Glucose-1-phosphate adenylyltransferase small subunit, ch
loroplastic/amyloplastic. (Os08t0345800-04)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							NA						
					
						Support reads
						3
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os08t0345800-03:2
Os08t0345800-02:7
Os08t0345800-01:7

General Information
CircRNA Name	Os08g0345800_circ_g.1
ID in PlantcircBase	osa_circ_036821
Alias	NA
Organism	Oryza sativa
Position	chr8: 15667618-15670067 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os08g0345800
Parent gene annotation	Similar to Glucose-1-phosphate adenylyltransferase small subunit , chloroplast precursor (EC 2.7.7.27) (ADP-glucose synthase) (AD P-glucose pyrophosphorylase) (AGPASE B) (Alpha-D-glucose-1-phosp hate adenyl transferase). (Os08t0345800-01);Similar to Glucose-1 -phosphate adenylyltransferase. (Os08t0345800-02);Similar to Iso form 2 of Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic. (Os08t0345800-03);Similar to Isofor m 2 of Glucose-1-phosphate adenylyltransferase small subunit, ch loroplastic/amyloplastic. (Os08t0345800-04)
Parent gene strand	-
Alternative splicing	NA
Support reads	3
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os08t0345800-03:2 Os08t0345800-02:7 Os08t0345800-01:7

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TGTAGTTGGCACCCAGAGGCACGGCAGGCTTGGCACGCTTCTTGGTGAGGGGATACAATCTAGT
CCCTGCACCACCTCCAAGAATGATTCCAAGCACACTcttcacattatctccaatacgagcattc
ttgtcgatgattgcccttctaatgtggcaattcttcccaataccaatgggaatgccaccttttt
caccaagg

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTTCACATTATCTCCAATACGAGCATTCTTGTCGATGATTGCCCTTCTAATGTGGCAATTCTTC
CCAATACCAATGGGAATGCCACCTTTTTCACCAAGGAGTTTCTTGTCTGCTTCAGTCTGGTGAA
CCAGAAAAAGGAAAAAGAAAGGGATAAATTCTCTTATTTTCTCTGACAGAGGCATATTATACAT
GCACTTATTTTACCTCGTAGTAGTCAGCTCCCATGAGTAATGAGTCCTCTATTATTGCGCCTTC
AGAAATGCAGGACCGGAGTCCAACTACTGAATGGTGTATCTTACAGTTCTACAAGGACGAAAAG
TGAAAGTTGCAGCATGATAAATTACTTTGAAGGAAATGTAAAAAAAGATAGACCATAGAAACTA
CAGGAGGTTTTGAATTATAACATACAAACACAACATACTTACTTTAATAACACAACCTTCACCA
ATGACACTGTCTGTCACATCAGCATCAAGAACCTTCGAAGGAGGCAAGTGTCGAGGTTGTGTAT
AAATTGGAGCAGACCGGTCATAGAAACTGCAGATATTTTGATGGTATATTTTATATCATAAGGA
GACAATTATAAATTCACATGCTTCAAATTCCATAATCTTCAGCCACAGCAAGGTGTAAAAATTG
AAAGCATACCTGAAATCTGGTACAGGCTTTTTCGTTATTCCCAGATTTGCATTATAGAATGCCT
CAATGGTACCAATGTCTTCCCAGTAACCATCATACAAGTAAGCTTGTACCTGCAGACAACAAAA
ATAGATTCTTAAGCAGCAAATATAGCACATGACCTACAAGTAATAAAAAAGTAATTTATTACAT
ATGCCATGACAATATTTCAGTGAGAGAAGGTCAAATGCTAACAATCATAAAAGCAGCAGTAATA
AACTGAAGAAAACAAAAGGCTACTAAACAGCGAGCTTTCCATACCCTCATTCCGATGTTTGTTG
CACCTGGAATGACTTCACTTCCAAAGTCATTAGCTCCAGGAAATTGTTCACGGAGGAGCTGAAG
CATTACATTTTTACTAATCACATAGATACCCATGCTAGCAATATAAGGCATTTCTTTTGCCCTC
ACGTCGTCAAGGCCAAGTATGGTAGTGTCAACCTACAAGACGAAAATAGGCAACAAAATGAGTT
TTGATATGGAAGTATGTGGTGTAATAACTGATATCTCACAACTGTATATCACAAGTTAGCAAGA
AAGGCACGTCATTTGCATACCATCATTGCTTTCAATTGTTCTCCTTTTGGTTTCTCTGCAAATT
CAACTATTCTCCCTTCCTCGTCAATTTTCATGAGGCCGAATGCAGTTGCACGTTTCTCATCCAT
TGGCAGGGCAGCAACAGTAATATCAGAATCTGTTTCTCTGTGTGCCTGAATGAACTTTTCATAG
TCCATGCGGTAAAGGTGATCTCCAGCCAGAATTAGAAACTCCATAACATTATGCTCCTCAAATA
GCCATAAGTACTGTCTTACAGCATCTGCAGTACCCTGAGGTCAGAATATAAAACAAAATCAGTA
CTTGTATAAGATAGATTGGGATCCTACAAACACAGCCATCTTCAGTAACTAACTGAAACGACAA
GTGTTGCCTGTGCATTACAAATTAGAATGTAATAATATGCCTGGATTGGTACGTACTAGCAGAA
ATTATGTGCATGTATGCTCTAGCGTTCAAAATCTAAAGAAGAAATTCTGATGCATACTAAATTA
CAACTCATGAATCATGATTTGTTTTTTCCTTTACTGAGAAACAATTATACTGGCAATTCTGAGT
ATGCATACCACACTAATCATTTTCCTATACTAATTGACAAATAGTAACTAAACTTGTTCATGAC
TGGACTTGGAAGACAAATGCAAAAGCACTCATTGGAACAAATTTATTCACAGTTTTCAAATGCC
TAGTTGAGTTTAGAATCGTCTTTAAGATGCTAGCAGGAGTCAAGAAAATTCCCAATGAAATAAT
TTGCAATGTTAAAAAATGTAAACTGTTAGAATCGAAGACATCAGACTTAATGATAAGGATGAAT
TTTATTATTATAGAGAATGCTTTGGAGTGGAAAAGAAATATGCAATGCCCAAAGGTAGATGTAC
ATTTGACATCAAACAAAACACTTTGATATTGAGTATGATACCTGAAACCAGTTAGGATTATCTG
GGCTCTGCTGTGCAGCGAGGACTTCAACGAACCCTTCATTCTTGTACCCGCCAATGTTGTTCCC
ATAGGCTCTTGACAGGTGACGGTTCAGAGAGGCAGAGTTGAATTGTGTCAGCACATAGATCTTG
GATATGTTGCTGTTCAAACAGTTGCTGACAGGGATATCAATAAGCCTGTAGTTGGCACCCAGAG
GCACGGCAGGCTTGGCACGCTTCTTGGTGAGGGGATACAATCTAGTCCCTGCACCACCTCCAAG
AATGATTCCAAGCACACT
						
					

			
		

Sequences
Splice junction sequence	TGTAGTTGGCACCCAGAGGCACGGCAGGCTTGGCACGCTTCTTGGTGAGGGGATACAATCTAGT CCCTGCACCACCTCCAAGAATGATTCCAAGCACACTcttcacattatctccaatacgagcattc ttgtcgatgattgcccttctaatgtggcaattcttcccaataccaatgggaatgccaccttttt caccaagg
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTTCACATTATCTCCAATACGAGCATTCTTGTCGATGATTGCCCTTCTAATGTGGCAATTCTTC CCAATACCAATGGGAATGCCACCTTTTTCACCAAGGAGTTTCTTGTCTGCTTCAGTCTGGTGAA CCAGAAAAAGGAAAAAGAAAGGGATAAATTCTCTTATTTTCTCTGACAGAGGCATATTATACAT GCACTTATTTTACCTCGTAGTAGTCAGCTCCCATGAGTAATGAGTCCTCTATTATTGCGCCTTC AGAAATGCAGGACCGGAGTCCAACTACTGAATGGTGTATCTTACAGTTCTACAAGGACGAAAAG TGAAAGTTGCAGCATGATAAATTACTTTGAAGGAAATGTAAAAAAAGATAGACCATAGAAACTA CAGGAGGTTTTGAATTATAACATACAAACACAACATACTTACTTTAATAACACAACCTTCACCA ATGACACTGTCTGTCACATCAGCATCAAGAACCTTCGAAGGAGGCAAGTGTCGAGGTTGTGTAT AAATTGGAGCAGACCGGTCATAGAAACTGCAGATATTTTGATGGTATATTTTATATCATAAGGA GACAATTATAAATTCACATGCTTCAAATTCCATAATCTTCAGCCACAGCAAGGTGTAAAAATTG AAAGCATACCTGAAATCTGGTACAGGCTTTTTCGTTATTCCCAGATTTGCATTATAGAATGCCT CAATGGTACCAATGTCTTCCCAGTAACCATCATACAAGTAAGCTTGTACCTGCAGACAACAAAA ATAGATTCTTAAGCAGCAAATATAGCACATGACCTACAAGTAATAAAAAAGTAATTTATTACAT ATGCCATGACAATATTTCAGTGAGAGAAGGTCAAATGCTAACAATCATAAAAGCAGCAGTAATA AACTGAAGAAAACAAAAGGCTACTAAACAGCGAGCTTTCCATACCCTCATTCCGATGTTTGTTG CACCTGGAATGACTTCACTTCCAAAGTCATTAGCTCCAGGAAATTGTTCACGGAGGAGCTGAAG CATTACATTTTTACTAATCACATAGATACCCATGCTAGCAATATAAGGCATTTCTTTTGCCCTC ACGTCGTCAAGGCCAAGTATGGTAGTGTCAACCTACAAGACGAAAATAGGCAACAAAATGAGTT TTGATATGGAAGTATGTGGTGTAATAACTGATATCTCACAACTGTATATCACAAGTTAGCAAGA AAGGCACGTCATTTGCATACCATCATTGCTTTCAATTGTTCTCCTTTTGGTTTCTCTGCAAATT CAACTATTCTCCCTTCCTCGTCAATTTTCATGAGGCCGAATGCAGTTGCACGTTTCTCATCCAT TGGCAGGGCAGCAACAGTAATATCAGAATCTGTTTCTCTGTGTGCCTGAATGAACTTTTCATAG TCCATGCGGTAAAGGTGATCTCCAGCCAGAATTAGAAACTCCATAACATTATGCTCCTCAAATA GCCATAAGTACTGTCTTACAGCATCTGCAGTACCCTGAGGTCAGAATATAAAACAAAATCAGTA CTTGTATAAGATAGATTGGGATCCTACAAACACAGCCATCTTCAGTAACTAACTGAAACGACAA GTGTTGCCTGTGCATTACAAATTAGAATGTAATAATATGCCTGGATTGGTACGTACTAGCAGAA ATTATGTGCATGTATGCTCTAGCGTTCAAAATCTAAAGAAGAAATTCTGATGCATACTAAATTA CAACTCATGAATCATGATTTGTTTTTTCCTTTACTGAGAAACAATTATACTGGCAATTCTGAGT ATGCATACCACACTAATCATTTTCCTATACTAATTGACAAATAGTAACTAAACTTGTTCATGAC TGGACTTGGAAGACAAATGCAAAAGCACTCATTGGAACAAATTTATTCACAGTTTTCAAATGCC TAGTTGAGTTTAGAATCGTCTTTAAGATGCTAGCAGGAGTCAAGAAAATTCCCAATGAAATAAT TTGCAATGTTAAAAAATGTAAACTGTTAGAATCGAAGACATCAGACTTAATGATAAGGATGAAT TTTATTATTATAGAGAATGCTTTGGAGTGGAAAAGAAATATGCAATGCCCAAAGGTAGATGTAC ATTTGACATCAAACAAAACACTTTGATATTGAGTATGATACCTGAAACCAGTTAGGATTATCTG GGCTCTGCTGTGCAGCGAGGACTTCAACGAACCCTTCATTCTTGTACCCGCCAATGTTGTTCCC ATAGGCTCTTGACAGGTGACGGTTCAGAGAGGCAGAGTTGAATTGTGTCAGCACATAGATCTTG GATATGTTGCTGTTCAAACAGTTGCTGACAGGGATATCAATAAGCCTGTAGTTGGCACCCAGAG GCACGGCAGGCTTGGCACGCTTCTTGGTGAGGGGATACAATCTAGTCCCTGCACCACCTCCAAG AATGATTCCAAGCACACT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.170929908

Conservation Information
Conserved circRNAs	NA
PMCS	0.170929908

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							15670052-15667826(+)
15669071-15667620(-)
						
					

						Potential amino acid sequence
						
							MIPSTLFTLSPIRAFLSMIALLMWQFFPIPMGMPPFSPRSFLSASVS*(+)
MEFLILAGDHLYRMDYEKFIQAHRETDSDITVAALPMDEKRATAFGLMKIDEEGRIVEFAEKPK
GEQLKAMMVDTTILGLDDVRAKEMPYIASMGIYVISKNVMLQLLREQFPGANDFGSEVIPGATN
IGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRHLPPSKVLDADV
TDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETEADKKLLGEKGGIPIGIG
KNCHIRRAIIDKNARIGDNVKSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNC
LNSNISKIYVLTQFNSASLNRHLSRAYGNNIGGYKNEGFVEVLAAQQSPDNPNWFQGTADAVRQ
YLWLFEEHNVMEFLILAGDHLYRMDYEKFIQAHRETDSDITVAALPMDEKRATAFGLMKIDEEG
RIVEFAEKPKGEQLKAMMVDTTILGLDDVRAKEMPYIASMGIYVISKNVMLQLLREQFPGANDF
GSEVIPGATNIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRHL
PPSKVLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETEADKKLLG
EKGGIPIGIGKNCHIRRAIIDKNARIGDNVKSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANY
RLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYGNNIGGYKNEGFVEVLAAQQSPDNPNW
FQGTADAVRQYLWLFEEHNVMEFLILAGDHLYRMDYEKFIQAHRETDSDITVAALPMDEKRATA
FGLMKIDEEGRIVEFAEKPKGEQLKAMMVDTTILGLDDVRAKEMPYIASMGIYVISKNVMLQLL
REQFPGANDFGSEVIPGATNIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRS
APIYTQPRHLPPSKVLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYY
ETEADKKLLGEKGGIPIGIGKNCHIRRAIIDKNARIGDNVKSVLGIILGGGAGTRLYPLTKKRA
KPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYGNNIGGYKNEGFVEVLA
AQQSPDNPNWFQGTADAVRQYLWLFEEHNVMEFLILAGDHLYRMDYEKFIQAHRETDSDITVAA
LPMDEKRATAFGLMKIDEEGRIVEFAEKPKGEQLKAMMVDTTILGLDDVRAKEMPYIASMGIYV
ISKNVMLQLLREQFPGANDFGSEVIPGATNIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKP
VPDFSFYDRSAPIYTQPRHLPPSKVLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIE
DSLLMGADYYETEADKKLLGEKGGIPIGIGKNCHIRRAIIDKNARIGDNVK(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	15670052-15667826(+) 15669071-15667620(-)
Potential amino acid sequence	MIPSTLFTLSPIRAFLSMIALLMWQFFPIPMGMPPFSPRSFLSASVS*(+) MEFLILAGDHLYRMDYEKFIQAHRETDSDITVAALPMDEKRATAFGLMKIDEEGRIVEFAEKPK GEQLKAMMVDTTILGLDDVRAKEMPYIASMGIYVISKNVMLQLLREQFPGANDFGSEVIPGATN IGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRHLPPSKVLDADV TDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETEADKKLLGEKGGIPIGIG KNCHIRRAIIDKNARIGDNVKSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNC LNSNISKIYVLTQFNSASLNRHLSRAYGNNIGGYKNEGFVEVLAAQQSPDNPNWFQGTADAVRQ YLWLFEEHNVMEFLILAGDHLYRMDYEKFIQAHRETDSDITVAALPMDEKRATAFGLMKIDEEG RIVEFAEKPKGEQLKAMMVDTTILGLDDVRAKEMPYIASMGIYVISKNVMLQLLREQFPGANDF GSEVIPGATNIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRHL PPSKVLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETEADKKLLG EKGGIPIGIGKNCHIRRAIIDKNARIGDNVKSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANY RLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYGNNIGGYKNEGFVEVLAAQQSPDNPNW FQGTADAVRQYLWLFEEHNVMEFLILAGDHLYRMDYEKFIQAHRETDSDITVAALPMDEKRATA FGLMKIDEEGRIVEFAEKPKGEQLKAMMVDTTILGLDDVRAKEMPYIASMGIYVISKNVMLQLL REQFPGANDFGSEVIPGATNIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRS APIYTQPRHLPPSKVLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYY ETEADKKLLGEKGGIPIGIGKNCHIRRAIIDKNARIGDNVKSVLGIILGGGAGTRLYPLTKKRA KPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYGNNIGGYKNEGFVEVLA AQQSPDNPNWFQGTADAVRQYLWLFEEHNVMEFLILAGDHLYRMDYEKFIQAHRETDSDITVAA LPMDEKRATAFGLMKIDEEGRIVEFAEKPKGEQLKAMMVDTTILGLDDVRAKEMPYIASMGIYV ISKNVMLQLLREQFPGANDFGSEVIPGATNIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKP VPDFSFYDRSAPIYTQPRHLPPSKVLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIE DSLLMGADYYETEADKKLLGEKGGIPIGIGKNCHIRRAIIDKNARIGDNVK(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os08g0345800_circ_g.1

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