Detail information of POPTR_0002s03750_circ_g.1


General Information
CircRNA Name POPTR_0002s03750_circ_g.1
ID in PlantcircBase pop_circ_000590
Alias Chr02:2327933-2331920
Organism Populus trichocarpa
Position chr2: 2332671-2336658  JBrowse»
Reference genome Populus trichocarpa genome v3.0
Type   e-circRNA
Identification method CIRCexplorer
Parent gene POPTR_0002s03750
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues stem xylem
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered POPTR_0002s03750.2:9
POPTR_0002s03750.1:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCAGATAAATGTTTACCTGGCCCCTGCGCAACATCTCTGATTTCTTAAGCTTTTTCATAGCATA
CACTTGGCCTGTTGTTTTTTCTCTACAGATTCTGACccatccccggaacttggtagtcattcac
aatttcaaagttcttgtatgtatagcccacaaaattgacgtccttagatgagagcatctgcaat
atagatgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCATCCCCGGAACTTGGTAGTCATTCACAATTTCAAAGTTCTTGTATGTATAGCCCACAAAATT
GACGTCCTTAGATGAGAGCATCTGCAATATAGATGTCAAAAAGTGAGGGATATATAGGTCATTT
CTGGTTGGGTAATTCATGATGGTTTAAATTAAATATCACTGGTTGAGAAATGAGAAGCACATGT
GGTATCAAATATAGGTCATTTCTCTTGCACCTATTGCTGCTTTAAATTAAAAGATTAGATCATG
ATGGTTTTAGCTGTCCTTCCCGATTTGCATTGCTGCCATAAACATCAACATCTCACTGCTTCTC
TATGTATTTTTATACGACGGGTCCTATGCTGTATAGTTTATGCGGTTCCCACTTTAAGTACCTA
CTATTGTGTGTATGTAATATGCATGCCACTCTCAGGGAGAAAGAAAAAAAGAAGGAAACAATAT
GAAGGAAAAAAAACAAAAAAACCACCATCTCTTATATTTCTTTTGATTCCTCTTGGTGTGATGA
ACATATATGGTAGGAAATATTCTAGGCTTGTGAGTTGCGAGTGGTTTTTTATGAAAAATAATTT
CTCTAAAGTTTTGTAGTTGTATAGTAATTAATTACGAGATAGAGATATAAATAAGATCTTTGAA
TTATCTGTCCTTATCGTGCATGCTTGGTTTAGCATTAATTACTTGACATTGTCCAAAAGGATTG
AGAGTTAAGAATTTAATGTCGTTTACACTCATTAAAAGTTATTCGTCCAAAATTCACAAATCCT
ATCCATTGATTCCATTCTTATATTTTAGACTCCAAACTTTGAACTTCTAGAAAAGCAACTTCAG
TAACAGCTCCTAACTATGAAAAATAGTTCCCTTGCCCTACTATTAGCTTGGCACTCAATGGAAA
AAGCTTGTGCATGCTGTCCTTTACCAATAGCAGAAAGTCACAAAAGACTCAAGGAAAGACTAGG
GAGCATTGCATTTTGATCCCCATCAAATCTTGCCTTCAATTTCTTGACAATCAGAAGGGCCTTC
TTAAACAAATAAAAAGGCCAATGCAAAGATGGTAAAAATTAAAACGCAACTAACTATGACAGAT
CTCCAAAACCATACCAGCAACTTAACTTGTCCTTGCCCCACATTCAGATTCCAATGGGGAAAAG
GAGAGAAAAAAACAGAGGAACCCTAGACACAATCACATGGACTACATGTGGCTAGAATTCTTCA
CCATAGCAACCGCCAAGTTACTGAGAACAAAACTCATATGACACTTGGGGCAGAGAAAAATACA
ATGCCTTTGATTTTCTCTGCGTGTAAAAATGAAATTTTTTAGTTTGCTGAAGAGGAAAACTTTT
TCATATTCAAGAATCAACCACTTCACAGCTTGAAGCAACAAAGAACAATATCCTGAGAGATAAT
GGCACTAATAATCCCATATGTAAATACTCTCAAAGACTTAAACTGACCTTTCTCCATGGACCAG
TTTTTGATGTAGTTTGAGGTTGGTTCTCAGACTGCAGAGCCAAAAGCACGCAGAAAAAAAAAGT
ATACTGAGCAACAAGCACAGATAGTTCACAAAACCTGATAAGAAATTAAGAGACGTCAATACCT
CTTCAAATTTTACAAAATTTTGGGTATCCAAATCATCCTTGACCTCAGGAATAAATGCAGCTTC
CATCTGATAAAGCTTATCCCATTCCACGCCATTAAACCATGGATGAGCCTGTAAAAGGAAGAGG
CAGGAATGTAATTCTTTTTATTTGCAACTAGCTTACTTAACATATTCAAGTATTCAGAAAAGGA
CACACCATACAACACCTTTATTTCTTCTGCGCCATTTGTTCCCAATCTCTGGTCGACATTACAT
AAGAGTTTGCTAGTAAGATCTTTTGCCGCTGGAGATAATTTTGCTTCTTCTGGAAATTTCAAAT
GTGTTCTCCAGTTTACTATCTGAGTAAAAGGGAAACTTCACAGCATTAACTTATTAGCGAATTG
ATATTTACTTACTATTCTTAAAACCCATAATATTAAGTATAAATCAGTAGCGCCCAATTAGGAT
ATTGATCCAATCAGGAAAGCACCCACAACCTATGTAACCTAAAAAAAACTGCATTCATATTAAC
CAGATTTAAAAACAGCAAAATCATTGGCTACTTTAAATATGCAAATTAAACTATTCAAAAGGAA
AAGAATGATTAATGCTCGAATATGTCTATGCCCCAAACATAGATCAACTGTAACATGCAACCTA
AAAGATTTACCCGAGTAAAGCTATGGATCTTTATGATACAAATGAGATCCCAATGATATACAAG
TTGGGTCAGAAACAATAAAGTACAGCTATGGTTCAGTTTAAAATTAACCAAAACTAACAGCAGA
AATTCCTAATCTATTGCTGTGTGAAATTTATCTTCGAAGAAATAGTACAGGCAAGAGACTTAGT
AAGCATGATCTAGAAAGACATGCAAGAAAGAAGTGTACAATCAAATACATGTGGATGCAAGGTT
GAAAACAAAAAACACCAATCACCAATACGTCTCACTTTACCTTCTTACATGTTGACAATGGTTC
ATCTGAATAAAAAGGTGGATAACCCACAAGCATTTCGTACATAATAGCACCAAGTGACCACCTG
CAAATAATAACTGTGAGTCTCGTAGCCTAAACTACCTTGGAGAAAACTAGTGTATCTCCAGATA
TGCAGCAAGCGTTGGTAACAGTTGAAGGCTTAAGTTATTTCCCACCATGGAGTCATCAAAACGC
TTTAGAAGTAATTTATTTCCATGCCCATCAGAATGTACAGAACTACTAACCAATCACATTCCAT
CCCATAACCTTTCTTCAATAGCACTTCTGGAGCGATATAGTCAGGTGTACCGACAGTAGAAAAG
GCCTGCAGGACCCAACAACAAAATTTAGACAAGGAAAAACAAAGCCATATCCTTCGATCTTCAA
AAAACATGCTTAAAGCTCACACACCACTTTAAAAAAGCCAAAATAAAGAAGCAAATTCTCTTCT
AGAATTTTATTCCATAATCCACATAGGATTCATATCTTAATTGAGCACAACTAACATTCTTTCA
TTTTTTAAAACATGTTCTTCAAATCACCAAGGAAGAGAGAAGGCAAATCAGAGAGACTAAAGGA
TCCATTTAAGATTTTAAATTGATATGCCAAGTTGGAATAATCAGACACACATGCATAGATGGAG
ATTTCAGACATGCGATGGCAGAAAACTTACAAGCATCCTCCTATTCTTTTGCCAATGTTCCAAT
TGCTCTTGCTGTGTGCGCCTTGGAGCTGCTGGGCGTTCTTCATTCTGTGTAGTCCCATTACTAT
TGTTGTTTACTACTGAAAAGTCTCCTTCTTGGATGGTACTGCAGTCCAATGGTTTACACAGTCC
AAAATCAGATAGCCTCAAGTGCCCATATCTATCAAGTAGCAGGTTGTCGGGCTTAATATCCCTA
TAACATGTGATGCAAAAACAAAAATAAAGTCAATCCACATTTAACTGGCCAATACATTCTCATT
GGCCTAAAACACCCCAAGATAAAATTATTATTATTTGACATTTAATTACAAACCTATGGATGTA
ATTATGCTTATGGATAGATTCAATAGCCAAAACTGTTTCTCCAACATAAAATCTAGCTTCATCT
TCTGTCAAGGTATCTTTTCTCATAAGTAAAGTCATCATATCTCCACCAGGTAAATATTCCATGA
TAAGGTAGAGAAACCCATCATCTTGAAAAGAACAGTACAGTTTGACAATGCAATTGCTGTCAAC
CTCAGTGAGCAGATTCCTTTCAGCTTTAACATGCTCAACCTAGAAAAGATTGTGATGCCAACTT
GTAATAAGCAAGGGTAATAAACCTTAGTCATATATATCATCAAGCAGGCCAGATAAATGTTTAC
CTGGCCCCTGCGCAACATCTCTGATTTCTTAAGCTTTTTCATAGCATACACTTGGCCTGTTGTT
TTTTCTCTACAGATTCTGAC
Conservation Information
Conserved circRNAs NA
PMCS 0.136174049
Functional Information
Coding potential Y
Potential coding position 2336431-2332746(+)
2336618-2336647(-)
2332696-2336647(-)
Potential amino acid sequence MQLLSTSVSRFLSALTCSTWPLRNISDFLSFFIAYTWPVVFSLQILTHPRNLVVIHNFKVLVCI
AHKIDVLR*(+)
MKKLKKSEMLRRGQVEHVKAERNLLTEVDSNCIVKLYCSFQDDGFLYLIMEYLPGGDMMTLLMR
KDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRYGHLRLSDFGLCKPLDCSTIQE
GDFSVVNNNSNGTTQNEERPAAPRRTQQEQLEHWQKNRRMLAFSTVGTPDYIAPEVLLKKGYGM
ECDWWSLGAIMYEMLVGYPPFYSDEPLSTCKKIVNWRTHLKFPEEAKLSPAAKDLTSKLLCNVD
QRLGTNGAEEIKAHPWFNGVEWDKLYQMEAAFIPEVKDDLDTQNFVKFEESENQPQTTSKTGPW
RKMLSSKDVNFVGYTYKNFEIVNDYQVPGMGQNL*(-)
MTTKFRGWVRICREKTTGQVYAMKKLKKSEMLRRGQVEHVKAERNLLTEVDSNCIVKLYCSFQD
DGFLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDR
YGHLRLSDFGLCKPLDCSTIQEGDFSVVNNNSNGTTQNEERPAAPRRTQQEQLEHWQKNRRMLA
FSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDEPLSTCKKIVNWRTHLKF
PEEAKLSPAAKDLTSKLLCNVDQRLGTNGAEEIKAHPWFNGVEWDKLYQMEAAFIPEVKDDLDT
QNFVKFEESENQPQTTSKTGPWRKMLSSKDVNFVGYTYKNFEIVNDYQVPGMGQNL*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Liu et al., 2021