Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | POPTR_0002s03750_circ_g.1 |
| ID in PlantcircBase | pop_circ_000590 |
| Alias | Chr02:2327933-2331920 |
| Organism | Populus trichocarpa |
| Position | chr2: 2332671-2336658 JBrowse» |
| Reference genome | Populus trichocarpa genome v3.0 |
| Type | e-circRNA |
| Identification method | CIRCexplorer |
| Parent gene | POPTR_0002s03750 |
| Parent gene annotation | NA |
| Parent gene strand | - |
| Alternative splicing | NA |
| Support reads | NA |
| Tissues | stem xylem |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | POPTR_0002s03750.2:9 POPTR_0002s03750.1:9 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.136174049 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
2336431-2332746(+) 2336618-2336647(-) 2332696-2336647(-) |
| Potential amino acid sequence |
MQLLSTSVSRFLSALTCSTWPLRNISDFLSFFIAYTWPVVFSLQILTHPRNLVVIHNFKVLVCI AHKIDVLR*(+) MKKLKKSEMLRRGQVEHVKAERNLLTEVDSNCIVKLYCSFQDDGFLYLIMEYLPGGDMMTLLMR KDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRYGHLRLSDFGLCKPLDCSTIQE GDFSVVNNNSNGTTQNEERPAAPRRTQQEQLEHWQKNRRMLAFSTVGTPDYIAPEVLLKKGYGM ECDWWSLGAIMYEMLVGYPPFYSDEPLSTCKKIVNWRTHLKFPEEAKLSPAAKDLTSKLLCNVD QRLGTNGAEEIKAHPWFNGVEWDKLYQMEAAFIPEVKDDLDTQNFVKFEESENQPQTTSKTGPW RKMLSSKDVNFVGYTYKNFEIVNDYQVPGMGQNL*(-) MTTKFRGWVRICREKTTGQVYAMKKLKKSEMLRRGQVEHVKAERNLLTEVDSNCIVKLYCSFQD DGFLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDR YGHLRLSDFGLCKPLDCSTIQEGDFSVVNNNSNGTTQNEERPAAPRRTQQEQLEHWQKNRRMLA FSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDEPLSTCKKIVNWRTHLKF PEEAKLSPAAKDLTSKLLCNVDQRLGTNGAEEIKAHPWFNGVEWDKLYQMEAAFIPEVKDDLDT QNFVKFEESENQPQTTSKTGPWRKMLSSKDVNFVGYTYKNFEIVNDYQVPGMGQNL*(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Liu et al., 2021 |