Plant Circular RNA Database

Detail information of AT5G06120_circ_g.4

			
						 General Information
					
						CircRNA Name
						AT5G06120_circ_g.4
					
						ID in PlantcircBase
						ath_circ_036654
					
						Alias
						5:1845292-1849233
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr5: 1845292-1849233  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							AT5G06120						
					
						Parent gene annotation
						
							ARM repeat superfamily protein
							
						Parent gene strand
						+
					
						Alternative splicing
						
							AT5G06120_circ_g.1 AT5G06120_circ_g.2 AT5G06120_circ_g.3 AT5G06120_circ_g.5 AT5G06120_circ_g.6 AT5G06120_circ_g.7 						
					
						Support reads
						2
					
						Tissues
						seedling
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT5G06120.6:14
AT5G06120.10:14
AT5G06120.3:14
AT5G06120.1:14
AT5G06120.7:14
AT5G06120.9:14
AT5G06120.8:14
AT5G06120.5:14
AT5G06120.4:14
AT5G06120.2:14

General Information
CircRNA Name	AT5G06120_circ_g.4
ID in PlantcircBase	ath_circ_036654
Alias	5:1845292-1849233
Organism	Arabidpsis thaliana
Position	chr5: 1845292-1849233 JBrowse»
Reference genome	TAIR10.38
Type	ue-circRNA
Identification method	find_circ; CIRI2
Parent gene	AT5G06120
Parent gene annotation	ARM repeat superfamily protein
Parent gene strand	+
Alternative splicing	AT5G06120_circ_g.1 AT5G06120_circ_g.2 AT5G06120_circ_g.3 AT5G06120_circ_g.5 AT5G06120_circ_g.6 AT5G06120_circ_g.7
Support reads	2
Tissues	seedling
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT5G06120.6:14 AT5G06120.10:14 AT5G06120.3:14 AT5G06120.1:14 AT5G06120.7:14 AT5G06120.9:14 AT5G06120.8:14 AT5G06120.5:14 AT5G06120.4:14 AT5G06120.2:14

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CGTATTTTGCAGTGTGGAGACGCAAGAGGTGCTTGATGCTGAACTCTCCGCTCGTGTTTTGCGG
CTAGTAAATGTTATGGACAGTGGACTGCATAGACAGattctgctttgttaccaatggagagctt
ggcgcaacttgaggcaatgtgcgagagattatacaactcacaggattcagctgagagggctcat
gctgaaaa

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							ATTCTGCTTTGTTACCAATGGAGAGCTTGGCGCAACTTGAGGCAATGTGCGAGAGATTATACAA
CTCACAGGATTCAGCTGAGAGGGCTCATGCTGAAAATAGTCTGAGATGCTTTTCTGTGAATACG
GATTATATATCACAATGTCAATACATTCTCGACAATTCATCAAAACCTTATTCCTTAATGCTCG
CTAGCTCGAGTTTGTTAAAGCAAGTAACTGATCATACTCTTCCGCTGAATCTTCGCCTTGACAT
CAGTAAACTTCTTATGTCCTCCTAACCAAATAACTAGAATATCTCTTTTTGGCATTTAATATCT
TACTTGTTTCTGGTGTTCTTTCTGTTGTCTTTAGGGGCTTATATTGTGAACTATCTGGCTACAA
GAGGACCGAAGATGCAATCATTTGTTATCGCTTCTCTCATTCAACTGCTTTGCCGGCTCACAAA
GTTTGGATGGTTAGATGATGATAGATTCAGGGATGTGGTTAAGGAATCTACAAACTTCTTGGAA
CAGGTGATTCATCTTCTGGGGGAATACAGTGCTTTGTGGACATTTTTTTGTAGAATTTTCAGAT
ATTTTTAACAAGGGCTTGCTGAATACGTTGCTTACATCAATTTTATTTCAATAGGGTTCCTCGG
ATCACTATGCTATTGGTTTAAGAATTTTGGATCAACTTGTGCAGGAGATGAATCAGGTTAGTGA
TGTATTGTGGTTGATTTTCCATGTCACAGACATGTCCTAACATAGGCTGGAATAACTCTCTTTT
AAGTTTGAGTTCTTGGCATGTATTGCTAATTGCATTTGAGTCATGTTTTTGTATATTAGCTTTG
AGTTGCCTCATATTTTTGTTTCTTTTCGATCTAGAGTAGCAGTCTGTTATAGATACAAGTGGGA
GGTTTGTGCTGTATCTAAATAATTGTCTGTTTTCACCATTCCTTTATTTTTTTAATTAAAAACA
TTTAAGATGGCTGTTTTGTTAGACTGGCCAGAATTATATGTGCACAGTGTGCATGCTTTTAGAT
AGATAGCGTGTCACAAACTATATTTTTTCGAGGGTATTTATTTCTAACTTTTTGTTTTTCTACT
GTGTTCCAACTTACCAGGGTATTTTTTTTAAATGCTTATTGACATTTTTTCATCCCTTTTTTGC
TCAATTCTTAGCCTAATCCAGGACTGCCATCTACACATCATCGGCGGGTTGCATGCAACTTTAG
GGATCAATCCTTATTTCAAGTTTTCAGAATAGCTTTGACGTCATTAAGCTATCTGAAAAATGAT
GGTAATATGAGTCATCTATGTCAAAATTTTCGTTATATTCCGTCATGCCAAGTATGAAAACTTC
TACATACCAGCTTCATAATTTATGCACATTGGAATGTTTTGTAATCGTTAAGTATGTAACTATC
TTTGTCGATGTATATCTGTTGGTCTTAGCATAGGAGTGGAAATTTTCAATTGTAATGAGTCAGA
TATTTTCTTTTAACCAGCCGCTGGTCGTTTACAAGAATTGGCGCTTTCTCTTGCACTGAGGTGT
GTATCATTTGACTTTGTCGGAACTTCAATTGATGAAAGCACAGAGGAGTTTGGTACAGTTCAGG
TTGAACATTAATGATCTTCTATCTTCAATCTCTTTTCAATGCTTTGTGCCTATGTATTTGTGTA
CTCGTTTTTAAGGGGTGTTAACTTCTAGTGTTACTGATAATGTTTAGATTCCAACTTCCTGGAG
GTCAGTATTGGAGGATTCTTCCACGCTGCAGATATTTTTCGATTATTATGGTAGTACAGAGTCC
CCTCTTTCGAAAGAGGTATGTCTTTATTGTTATTTGTTTTTTTCCGTGCTTGACTAGAAGAAAC
AAAATGGCATCTTTTGCATCAAAGATAGATTTTGACTACCTTTTTTTTGTGAATTTTTTATTCA
CTCTCATTATGAGGACAAATGATTCAATTGCAGTAATGTCACTGATGACGTGATTTATTTCATG
TACAGTTGGGACTCAGTAGGTATTATAGATGACTTACAATTTGTTATTTTTTAATGTTTCTCTG
TTTTAACTTCTAGGCACTTGAGTGCTTGGTGCGATTGGCTTCTGTAAGGCGCTCTCTGTTCACA
AATGATGCTACACGCTCTAATTTTCTAGCTCATTTGATGACGGGAACCAAAGAAATTCTTCAAA
CTGGAAAAGGTATGCTTGATGTTTTTATACTATGGGACTTTCCTATGTCTGACTGTAAATATTG
CGCTTAAGGTGTTGCATTGTATGCAACTTTTAACTCTTCATGACTGACATTCCAGCTTCTCAAT
TACACAGTCTGTTAACATGTTATGTACAGTATTTGTTAATATTTTGTTCTGTTGCAAACTTTAC
ACCTCATTGAACTATAACATCTCACTGATCTTGGTTCGTCAACACAAATTACTTTTGTTGGATC
AGGTCTTGCTGATCATGATAATTACCACGTGTTCTGCCGTCTACTTGGGCGTTTTAGGCTGAAT
TATCAGGTAAATTTCTCGGTTAGATTCCTTTCTAGTTTACAGATTACGGTTTGTACAATTTTGT
TTGTGTTGTAGCTTGAAATTTATGTTATGATGCCATGTACTTGAGTAAATACACACATGTTCCT
TTTTTCTGTATGTGACAGTTGGACAGTCTTAACTATTCGTAATTTGTGACGCTATCTATGATTG
TCATATACCATTTGGATATAATTTATTGGTTTATATGGCTAAATTCAGACATTATGTAATAGCA
TGTTACGTGTATGAATTCATCTGCAGCTTTCAGAGCTTGTGAAGATGGAAGGTTATGGTGAGTG
GATACAGTTGGTGGCAGAGTTCACACTTAAATCTCTCCAGTCATGGCAGGTTCGCAAGTTTATG
TTAGTGAATGCATTAGCATACCAATTATAGACCCTACTAGTCTTTAAAGTTCTGGTTATCCTCC
AGCATGATCGTTTTTAGTATATAGCTTAAATATTTGGCGGAGATTGTATCTTGTTTGCAAAATC
CATGTGACCTTTTTTCTTACAGTGGGCCAGCAGCAGCGTGTATTACCTTCTTGGGATGTGGTCC
AGATTAGTAGCATCTGTCCCATACTTGAAGGGTGATTCACCAAGTCTACTTGATGAATTTGTAC
CTAAAATTACAGAGGGTTTTATCATCTCCAGATTCAATTCTGTGCAGGTATATAACATCACTTA
TTCTGGAGGATTGCCAGTACTGACTTGTAGTTTTTCTTTGATATTTTCCTATTTGAAATCCCCT
TTCCAGGCTAGCGTCCCAGATGATCCGACTGATCATCCTTTGGATAAAGTTGAAGTCCTGCAGG
ATGAGCTGGATTGCTTTCCTTACCTATGCAGATTTCAGGTTAGTCTTTTCTTCATATATGTGTC
ATGCAGTACCCTGGTTTTGCTCACATGTTTTGTTTGATTATGTTGTATCTTAACACAATTGAAC
TGCATCTGAGAGTCTTATCAATTATCATGCAGTATGAAAGAACTGGTATGTATATAATAAACAC
AATGGAGCCTCTTCTGCAATCATATACGGTAAAGTCTACTGTTATTCTGTGTTTAGCGTATTGT
TGTTCTGTCAATTCTTGTACGTGTCTTCCTAATCTTGAGCTGAGTGATTGTGTAACAGGAAAGA
GGGCAACTACAGTTTGCTGATAATTCTGAACTAGCACTCATTGAAGCAAAATTGTCATGGATTG
TTCACATTGTTGCCGCTATTGTTAAAATAAAGCAGTGCAGTGGTTGTAGGTAAGTTGATATCAT
ATCTTGGGGTTTCTTTGCATTTTGGTCTGTTTGAAGAACAAAATAATATATGGATTGAAATTTA
TACGTATTTTGCAGTGTGGAGACGCAAGAGGTGCTTGATGCTGAACTCTCCGCTCGTGTTTTGC
GGCTAGTAAATGTTATGGACAGTGGACTGCATAGACAG
						
					

			
		

Sequences
Splice junction sequence	CGTATTTTGCAGTGTGGAGACGCAAGAGGTGCTTGATGCTGAACTCTCCGCTCGTGTTTTGCGG CTAGTAAATGTTATGGACAGTGGACTGCATAGACAGattctgctttgttaccaatggagagctt ggcgcaacttgaggcaatgtgcgagagattatacaactcacaggattcagctgagagggctcat gctgaaaa
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	ATTCTGCTTTGTTACCAATGGAGAGCTTGGCGCAACTTGAGGCAATGTGCGAGAGATTATACAA CTCACAGGATTCAGCTGAGAGGGCTCATGCTGAAAATAGTCTGAGATGCTTTTCTGTGAATACG GATTATATATCACAATGTCAATACATTCTCGACAATTCATCAAAACCTTATTCCTTAATGCTCG CTAGCTCGAGTTTGTTAAAGCAAGTAACTGATCATACTCTTCCGCTGAATCTTCGCCTTGACAT CAGTAAACTTCTTATGTCCTCCTAACCAAATAACTAGAATATCTCTTTTTGGCATTTAATATCT TACTTGTTTCTGGTGTTCTTTCTGTTGTCTTTAGGGGCTTATATTGTGAACTATCTGGCTACAA GAGGACCGAAGATGCAATCATTTGTTATCGCTTCTCTCATTCAACTGCTTTGCCGGCTCACAAA GTTTGGATGGTTAGATGATGATAGATTCAGGGATGTGGTTAAGGAATCTACAAACTTCTTGGAA CAGGTGATTCATCTTCTGGGGGAATACAGTGCTTTGTGGACATTTTTTTGTAGAATTTTCAGAT ATTTTTAACAAGGGCTTGCTGAATACGTTGCTTACATCAATTTTATTTCAATAGGGTTCCTCGG ATCACTATGCTATTGGTTTAAGAATTTTGGATCAACTTGTGCAGGAGATGAATCAGGTTAGTGA TGTATTGTGGTTGATTTTCCATGTCACAGACATGTCCTAACATAGGCTGGAATAACTCTCTTTT AAGTTTGAGTTCTTGGCATGTATTGCTAATTGCATTTGAGTCATGTTTTTGTATATTAGCTTTG AGTTGCCTCATATTTTTGTTTCTTTTCGATCTAGAGTAGCAGTCTGTTATAGATACAAGTGGGA GGTTTGTGCTGTATCTAAATAATTGTCTGTTTTCACCATTCCTTTATTTTTTTAATTAAAAACA TTTAAGATGGCTGTTTTGTTAGACTGGCCAGAATTATATGTGCACAGTGTGCATGCTTTTAGAT AGATAGCGTGTCACAAACTATATTTTTTCGAGGGTATTTATTTCTAACTTTTTGTTTTTCTACT GTGTTCCAACTTACCAGGGTATTTTTTTTAAATGCTTATTGACATTTTTTCATCCCTTTTTTGC TCAATTCTTAGCCTAATCCAGGACTGCCATCTACACATCATCGGCGGGTTGCATGCAACTTTAG GGATCAATCCTTATTTCAAGTTTTCAGAATAGCTTTGACGTCATTAAGCTATCTGAAAAATGAT GGTAATATGAGTCATCTATGTCAAAATTTTCGTTATATTCCGTCATGCCAAGTATGAAAACTTC TACATACCAGCTTCATAATTTATGCACATTGGAATGTTTTGTAATCGTTAAGTATGTAACTATC TTTGTCGATGTATATCTGTTGGTCTTAGCATAGGAGTGGAAATTTTCAATTGTAATGAGTCAGA TATTTTCTTTTAACCAGCCGCTGGTCGTTTACAAGAATTGGCGCTTTCTCTTGCACTGAGGTGT GTATCATTTGACTTTGTCGGAACTTCAATTGATGAAAGCACAGAGGAGTTTGGTACAGTTCAGG TTGAACATTAATGATCTTCTATCTTCAATCTCTTTTCAATGCTTTGTGCCTATGTATTTGTGTA CTCGTTTTTAAGGGGTGTTAACTTCTAGTGTTACTGATAATGTTTAGATTCCAACTTCCTGGAG GTCAGTATTGGAGGATTCTTCCACGCTGCAGATATTTTTCGATTATTATGGTAGTACAGAGTCC CCTCTTTCGAAAGAGGTATGTCTTTATTGTTATTTGTTTTTTTCCGTGCTTGACTAGAAGAAAC AAAATGGCATCTTTTGCATCAAAGATAGATTTTGACTACCTTTTTTTTGTGAATTTTTTATTCA CTCTCATTATGAGGACAAATGATTCAATTGCAGTAATGTCACTGATGACGTGATTTATTTCATG TACAGTTGGGACTCAGTAGGTATTATAGATGACTTACAATTTGTTATTTTTTAATGTTTCTCTG TTTTAACTTCTAGGCACTTGAGTGCTTGGTGCGATTGGCTTCTGTAAGGCGCTCTCTGTTCACA AATGATGCTACACGCTCTAATTTTCTAGCTCATTTGATGACGGGAACCAAAGAAATTCTTCAAA CTGGAAAAGGTATGCTTGATGTTTTTATACTATGGGACTTTCCTATGTCTGACTGTAAATATTG CGCTTAAGGTGTTGCATTGTATGCAACTTTTAACTCTTCATGACTGACATTCCAGCTTCTCAAT TACACAGTCTGTTAACATGTTATGTACAGTATTTGTTAATATTTTGTTCTGTTGCAAACTTTAC ACCTCATTGAACTATAACATCTCACTGATCTTGGTTCGTCAACACAAATTACTTTTGTTGGATC AGGTCTTGCTGATCATGATAATTACCACGTGTTCTGCCGTCTACTTGGGCGTTTTAGGCTGAAT TATCAGGTAAATTTCTCGGTTAGATTCCTTTCTAGTTTACAGATTACGGTTTGTACAATTTTGT TTGTGTTGTAGCTTGAAATTTATGTTATGATGCCATGTACTTGAGTAAATACACACATGTTCCT TTTTTCTGTATGTGACAGTTGGACAGTCTTAACTATTCGTAATTTGTGACGCTATCTATGATTG TCATATACCATTTGGATATAATTTATTGGTTTATATGGCTAAATTCAGACATTATGTAATAGCA TGTTACGTGTATGAATTCATCTGCAGCTTTCAGAGCTTGTGAAGATGGAAGGTTATGGTGAGTG GATACAGTTGGTGGCAGAGTTCACACTTAAATCTCTCCAGTCATGGCAGGTTCGCAAGTTTATG TTAGTGAATGCATTAGCATACCAATTATAGACCCTACTAGTCTTTAAAGTTCTGGTTATCCTCC AGCATGATCGTTTTTAGTATATAGCTTAAATATTTGGCGGAGATTGTATCTTGTTTGCAAAATC CATGTGACCTTTTTTCTTACAGTGGGCCAGCAGCAGCGTGTATTACCTTCTTGGGATGTGGTCC AGATTAGTAGCATCTGTCCCATACTTGAAGGGTGATTCACCAAGTCTACTTGATGAATTTGTAC CTAAAATTACAGAGGGTTTTATCATCTCCAGATTCAATTCTGTGCAGGTATATAACATCACTTA TTCTGGAGGATTGCCAGTACTGACTTGTAGTTTTTCTTTGATATTTTCCTATTTGAAATCCCCT TTCCAGGCTAGCGTCCCAGATGATCCGACTGATCATCCTTTGGATAAAGTTGAAGTCCTGCAGG ATGAGCTGGATTGCTTTCCTTACCTATGCAGATTTCAGGTTAGTCTTTTCTTCATATATGTGTC ATGCAGTACCCTGGTTTTGCTCACATGTTTTGTTTGATTATGTTGTATCTTAACACAATTGAAC TGCATCTGAGAGTCTTATCAATTATCATGCAGTATGAAAGAACTGGTATGTATATAATAAACAC AATGGAGCCTCTTCTGCAATCATATACGGTAAAGTCTACTGTTATTCTGTGTTTAGCGTATTGT TGTTCTGTCAATTCTTGTACGTGTCTTCCTAATCTTGAGCTGAGTGATTGTGTAACAGGAAAGA GGGCAACTACAGTTTGCTGATAATTCTGAACTAGCACTCATTGAAGCAAAATTGTCATGGATTG TTCACATTGTTGCCGCTATTGTTAAAATAAAGCAGTGCAGTGGTTGTAGGTAAGTTGATATCAT ATCTTGGGGTTTCTTTGCATTTTGGTCTGTTTGAAGAACAAAATAATATATGGATTGAAATTTA TACGTATTTTGCAGTGTGGAGACGCAAGAGGTGCTTGATGCTGAACTCTCCGCTCGTGTTTTGC GGCTAGTAAATGTTATGGACAGTGGACTGCATAGACAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.115052554

Conservation Information
Conserved circRNAs	NA
PMCS	0.115052554

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of AT5G06120_circ_g.4

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