Detail information of Os04g0492300_circ_igg.1


General Information
CircRNA Name Os04g0492300_circ_igg.1
ID in PlantcircBase osa_circ_024360
Alias Os_ciR4815
Organism Oryza sativa
Position chr4: 24599681-24604310  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os04g0492300_circ_g.2 Os04g0492300_circ_g.3 Os04g0492300_circ_g.4 Os04g0492300_circ_g.5
Support reads 4
Tissues root
Exon boundary   Yes-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACAACACATTTGATCTGCTAATGCTGCTGCTGCCGTCATGCACCAACAAGAGAAGATCGCCTGG
AAAGTAAGGAAAGAGATCAAGGAGCTCATCTAGAAGgccaaaggctttgtcgctaattctttct
atactggcttgactgccaccgaattcttcttccatacgatgggtgggcgagaaggtcttgttga
tacagcgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCCAAAGGCTTTGTCGCTAATTCTTTCTATACTGGCTTGACTGCCACCGAATTCTTCTTCCATA
CGATGGGTGGGCGAGAAGGTCTTGTTGATACAGCGGTATGTCTATGTATAAAACCATCTATTGT
TTGCATAAGTTGATATTTGCACTCTATCTGTATTTCAGCACAAAAATTTCTTAAATTTGCTCAC
ATAGACTTACACCGCAGTACATACTACTCAATTGAATTAATAGTAGTACAATGATGATATTATG
TGAGAGGAATAGTCTGAATTAGCTCCTTGTGCCTGGCAGGGATAGGATTAGGAAACTTAGCAGC
TATTATAGAAGAGCACATCATCAACTAGAAACAAATGATAAGTTCATTCATCACATTCTTATAG
AATTAAGCCCACTTCTCCTTTATATTTTGAGCACAGCAATGATTGGGGAAGATGTTTCCTTGTT
CGTTGTTTGGGCACTAAATCAACTTGCTTGCATACCAGAGTTGAATCTGGCGTTTCCGTTTGAC
TCTGCCTTTTAGGCTTTGGTCCTTGCAGTTGAGTGTTTTATCTCAGGCACTGTAGTTCGCTGCA
TGAAAACCTTCACAGCACTATGCCAGTTCTATGTAGAGGTCTGTTAGGTGAACTATACTGGTAT
CTTGTGCATTCAGCTGGACCAAGGTGCAACCCATTGGGCATTTCCAGCATACTCATTGTGCCTT
CTGGCTTCTCAAAAACATTTGGGAATTGTTGGAAATTTGGAATATAATTTCTGCTTGTTTCCTT
GGTTGTGAACTTGTGATCGTAGGTTAAAACAGCTGAAACAGGATATATGTCCCGCAGATTAATG
AAGGGATTGGAAGATCTCTCAGTTTTCTATGATCAGACGGTCCGCAATGCTAGTGGTGGTATTG
TACAGTTCCTCTATGGAGATGATGGCATGGATCCTGCAAAGATGGAAGGGAAAGATGGAAAGCC
CTTAAATTTGGATCAATTGTTTATGAAAGTCATGGTCAGTTTTAACATGTAAAAACAGTTTGTT
TACTTGATCAAGTGAGATGCGCCTCGTGTGCTAACCATTTTACTGTTGTAGGCCACTTGTCCTC
AAAGGGGACAGAATACATTATCTCCAGGTGAAATCTTACAAATTTTAAATGACAAGCTCTCTGA
ACATGATGCCTCCTCTGATGATGGTTGTAGCGAAAAGTTCAAGCAACTGTTAACGTATTTTCTT
GAGGATCGTATAAAATTGCTGAAGAGCACAAGGAGAGCGCTTCTCCTAGATGAAGATCATGTTG
GAGAGAGGCACTCCAGCTTTGAAGAATCCATTGCTGCTAATATTTCTGGTATATCTGTGAAGCA
ACTACAGGTGTGTCTATTCATATTTTTCACATACCAATTCATCTCTGTTTTGCGAAAAACCTGA
AATATCAAGCACAGTCTATTTCTGATCAATTTTTTGGTCTCTTACTAATTGCGTGGTCATGCTA
ATTTTCTGCAGTAAATGTTAAACTGATTTCAAGTATTATTTTTATTGGTTTGCTTATGCATTTT
ATCCTTGTGTCGTCATTCTGTAATGGTTTTCCTTTTCTCCATATGGCTCAGGTTTTCTTGGACA
CATGTTTATCTCGTTACCACTTGAAGAAAATTGAAGCCGGAGCATCAATTGGGGCAATTGGGGC
TCAAAGTATTGGAGAGCCTGGAACTCAGATGACATTGAAAACTTTCCATTTTGCAGGAGTAGCT
AGCATGAGTATCCTATATACTATATGGTTCGTGAAAGTCTGCTTTTAATTTTAAGAATTACTAG
CAGGTCGTTTTGGCCTATTTCCTATAATTTATTTACTTTAGAGGGGCATTGGAATGTAGTATCT
AAGATAAAGCGGATGAAATTGTCAATAATATGCGCTAAAAGATATAAGCTTTCATCAATCTGAA
TTGATTTGCACAATACTACAGCATTTGATATCTTGATGTAGAGTAATGCATACATGCTATTCTT
GGACACTGCTGTTCAAATCATCTTTCCTTAACAAGTAAAAAGATGTTACTCTTGGTGTTCCTCG
CATCAAGGAAATTATCAATGCTGCTAAAAAGATAAGCACACCTATTATCACTGCTGAGTTACTT
TCTGAGAAGGATGTGTTGTCTGCACGCATTGTGAAAGGCTCTATGGAAAAGGCAGTGCTGGGTG
AGGTATGTTGCCCCCAAACTTGCTTTCGATGTTGATAATTGTATCCTCTTGTATTTTACATCAT
TACACGCACTTAAAACTTACAAGAAGTCAGTCTGCTTTACATCTTCATCTATGTTTCTTAAATA
CATTAAAATCATGACATGCATTTAATACACTTCAAAGATATTAGCCATTTGATATTTGTCTACG
CATCAAGCTAGTGGCATCATATTTACCAGGTTATTCAATTTACAGAAATGAAAAGCTCTGCCCA
CAATTTATAAATTTTATGAAGGAGAGAACTCAAATTTAGGAATTTCACGGTGTTACTTTGCCCT
TAACTTTTGGATGTATGGATGGTCTTTGTGTTGAGCAGGTGGCTGAAGCCATAAAGATTGTGTT
GAAATCAAGTCAACCAAACTTGGTTGTTAAACTCGATATGCAACGTATAGAAGCCCTGCACATG
GGCATCTCTGCTGACTCTGTGCAGCTGTCAATATTGAATCATCCAAAAATAAAGCTAAAATCTG
AGGTATCAACAAAGCTCTTTGATACGCCTGACCATCAGTTTTTTCTGTTAATATTATTTATTGT
ACGTCATCTTTGCAGCATGTTCGTGTTATTGATAAATCCAAGTTGAGAATTTATCCAGCTGGAA
TAGATAAGTCCAAACTTCTATATGAGTTACATCATCTCAAATCCATGCTTCCAAAAGTGATCGT
GAAGGTTAGCATTTATCAAGATGTGCAGTGTTAGATGTGCCATTTTGGCTGTCTCTGACCTTCC
TACTAATCAATTCAGGGTATTCCAACTGTTGAAAGAGCTGTGATCAGCGAAACTGGTGAAGAAA
ATGACAAAAGATACAAGTTGTTGGTTGAGGGGTATGAGTTCATATAATCATATCATTCACAGTT
TTAGCAGCATGAACTAAAGTTCCGTTTGTAGATTTGCTGACCCTTGTTAGAATTTTATTGACCT
ATTTTTGTAGATCACTAGAGTTCCAGGGTCTTGTCTCTTGGAATGGCTTAGTTTCTGACTTACT
CCAACTTCTGCATTATTTTTCTAGAATATTAATCAAATAGTTCTGTAATTGCAGAACAAATCTC
TTGGCAGTAATGGGTACTCCAGGAGTTGATGCTATGAAAACAAAAAGTAACCACATCATGGAAG
TGAACCGAACACTCGGAATTGAAGCTGCGAGGAGATCTATTATTGATGAAATTCAGTATACAAT
GAAAAGTCATGGGATGAACATTGATTCGAGACATATGATGCTTCTGGCAGATTTGATGACATAC
AAGGTACAATAATTAACACCTACCTTCATTTTATTATGCTATATTTTTAATCTATGTTGTGTAC
CCTTCAACAGTAACTTACATACTGCTGGTTCTTATTCTCCGAGCAGGGTGAAATTCTTGGCATT
ACTAGATATGGTATTGCAAAAATGAAAAGTAGTGTGCTGATGCTGGCTTCGTTTGAGAAAACAG
CGGAGCATCTCTTTAATGCATCATACAGTGGTCGTGAGGATCAGATAGAGGGAGTTAGTGAATG
CATTATCATGGGTATACCCATGCAACTTGGCACTGGTATTCTCAAAGTCAGACAAAGGTACGAA
TGATTAGCTTGCACCCTTTGATTGTGCTATAGCATACTATGATGGCAAACTTGTCTTTCCTGAG
CCACTGTACTACTTACATCAGACATGGCGAAATTACAGCTTCACCGGCAGTAACATTGTTAGAA
CTTCTGGATCAACCAGACAAACCTCACGTTTTACTGATAATACCCTTTTTTCCTTGCAGGCTTG
ACCATTTGCCTGAATTTAAATATCAGCCTGATCCAATATTGGCGTGATACAAGCTAGAAGCCTA
GAACCAGCTTAATTTGTCTGAAGCTGGAATTCTGTACAGATATATAGAGGGGTTGGATGTATAA
GCATGTATAAGCATCATATAGCAGGGCAGCTACGGCAACTGTAATTTGAGGCAAGTATGCACTG
CTGAGGTAGCATTGGGGCAAAACTCCCTTTTTTCTGATAGTCCACCGTATGTTTCAGCTTATTT
TGGTTTCAATCCCCCAGGTTTATTCTGTTTCCAGAGCAGGATTAGTTTAAAGTTCAAACATATA
CTAGCTAGGTGCAGTGTGCCACAGTTTGATTAGAATTGGGCCCGCTCATTGAACTTTTCTAAAG
AAGGAAAAAATGGTCCCTGGTCTAATGTCAAAAGCTTGAGCAGAACAAAGTAAATATCACGTCT
CTCTTTTGGTTCTTCCGTTTCTCCTGTGTCTTCAGAGCGAGCGTAGCTGTCACTCCATAGACAA
CCGCTTATTTTTATTTTTTTTTCTGATTTCCTCCTAGCTCTCACCTGTCAACAACACATTTGAT
CTGCTAATGCTGCTGCTGCCGTCATGCACCAACAAGAGAAGATCGCCTGGAAAGTAAGGAAAGA
GATCAAGGAGCTCATCTAGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.213583166
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015