In Plant Circular RNA Database (PlantcircBase), we collected publicly available back-splice junction sequences and their full-length sequences of circRNAs identified in plants by us and other groups. Based on the collected circRNAs, we further predicted those circRNAs putatively acting as miRNA sponges and their potential networks involving circRNA-miRNA-mRNA in the corresponding species. In the database, you can find plant circRNAs and their related information, such as their sequences, host genes, expression, experimental validation as well as bioinformatics tools for visualizing circRNA structures and predicting circRNAs from query sequences.



2018-06-29 NEW!

    PlantcircBase Release 3 (12 organisms, 95,143 circRNAs) online!


    PlantcircBase Release 2 (8 organisms, 89,997 circRNAs) online!


Cite us

Qinjie Chu, Xingchen Zhang, Xintian Zhu, Chen Liu, Lingfeng Mao, Chuyu Ye, Qianhao Zhu, Longjiang Fan. 2017. PlantcircBase: a database for plant circular RNAs. Molecular Plant [Full text]

Qinjie Chu, Panpan Bai, Xintian Zhu, Xingchen Zhang, Lingfeng Mao, Qian-Hao Zhu, Chuyu Ye, Longjiang Fan. 2018. PlantcircBase 3.0: characteristics, web-based prediction and genomic visualization of plant circRNAs. Unpublished.

Copyright©2017-2018 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Last modified at 2018-06-29. Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn