PIP marker database download

The data in this database are freely available for all academic and non-commercial users. Commercial users are kindly requested to contact us for details of possible licencing arrangements. You can download the data as follows:

Rice (Oryza sativa L. ssp. japonica) intron position and length can be downloaded here

Arabidopsis (Arabidopsis thaliana ecotype Columbia) intron position and length can be downloaded here

PIP markers of each species and corresponding PUTs (PlantGDB-assembled Unique Transcripts) used for developing the PIP markers can be downloaded from the following table by right clicking on the target link and selecting "save as". You can also download all the PIP markers by right clicking the link “All markers” at the bottom of the table. The latest version of PUTs can be downloaded  from plantGDB .

Species PlantGDB-assembled Unique Transcripts PIP markers
Allium cepa (onion) Allium_cepa.mRNA.PUT.fasta.bz2 AcepPIP
Antirrhinum majus (snapdragon) Antirrhinum_majus.mRNA.PUT.fasta.bz2 AmajPIP
Aquilegia formosa x Aquilegia pubescens Aquilegia_formosa_x_Aquilegia_pubescens.mRNA.PUT.fasta.bz2 AAfpPIP
Beta vulgaris (beet) Beta_vulgaris.mRNA.PUT.fasta.bz2 BvulPIP
Brassica napus (rape) Brassica_napus.mRNA.PUT.fasta.bz2 BnapPIP
Brassica rapa (field mustard) Brassica_rapa.mRNA.PUT.fasta.bz2 BrapPIP
Capsicum annuum (chilli pepper) Capsicum_annuum.mRNA.PUT.fasta.bz2 CannPIP
Citrus clementina Citrus_clementina.mRNA.PUT.fasta.bz2 CclePIP
Citrus sinensis (sweet orange) Citrus_sinensis.mRNA.PUT.fasta.bz2 CsinPIP
Coffea canephora (robusta coffee) Coffea_canephora.mRNA.PUT.fasta.bz2 CcanPIP
Euphorbia esula (leafy spurge) Euphorbia_esula.mRNA.PUT.fasta.bz2 EesuPIP
Festuca arundinacea (tall fescue) Festuca_arundinacea.mRNA.PUT.fasta.bz2 FaruPIP
Glycine max (soybean) Glycine_max.mRNA.PUT.fasta.bz2 GmaxPIP
Glycine soja (wild soybean) Glycine_soja.mRNA.PUT.fasta.bz2 GsojPIP
Gossypium arboreum (tree cotton) Gossypium_arboreum.mRNA.PUT.fasta.bz2 GarbPIP
Gossypium hirsutum (upland cotton) Gossypium_hirsutum.mRNA.PUT.fasta.bz2 GhirPIP
Gossypium raimondii(cotton) Gossypium_raimondii.mRNA.PUT.fasta.bz2 GraiPIP
Helianthus annuus (common sunflower) Helianthus_annuus.mRNA.PUT.fasta.bz2 HannPIP
Helianthus argophyllus(silverleaf sunflower) Helianthus_argophyllus.mRNA.PUT.fasta.bz2 HargPIP
Helianthus paradoxus(paradox sunflower) Helianthus_paradoxus.mRNA.PUT.fasta.bz2 HparPIP
Helianthus petiolaris(prairie sunflower) Helianthus_petiolaris.mRNA.PUT.fasta.bz2 HpetPIP
Hordeum vulgare (barley) Hordeum_vulgare.mRNA.PUT.fasta.bz2 HvulPIP
Ipomoea nil (japanese morning glory) Ipomoea_nil.mRNA.PUT.fasta.bz2 InilPIP
Lactuca perennis Lactuca_perennis.mRNA.PUT.fasta.bz2 LperPIP
Lactuca saligna(willowleaf lettuce) Lactuca_saligna.mRNA.PUT.fasta.bz2 LsalPIP
Lactuca sativa (garden lettuce) Lactuca_sativa.mRNA.PUT.fasta.bz2 LsatPIP
Lactuca serriola(prickly lettuce) Lactuca_serriola.mRNA.PUT.fasta.bz2 LserPIP
Lactuca virosa(bitter lettuce) Lactuca_virosa.mRNA.PUT.fasta.bz2 LvirPIP
Lotus corniculatus(bird's-foot trefoil) Lotus_corniculatus.mRNA.PUT.fasta.bz2 LcorPIP
Lotus japonicus Lotus_japonicus.mRNA.PUT.fasta.bz2 LjapPIP
Lycopersicon esculentum (tomato) Lycopersicon_esculentum.mRNA.PUT.fasta.bz2 LescPIP
Malus x domestica (apple) Malus_x_domestica.mRNA.PUT.fasta.bz2 MdomPIP
Medicago truncatula (barrel medic) Medicago_truncatula.mRNA.PUT.fasta.bz2 MtruPIP
Mesembryanthemum crystallinum (common iceplant) Mesembryanthemum_crystallinum.mRNA.PUT.fasta.bz2 McryPIP
Nicotiana tabacum (common tobacco) Nicotiana_tabacum.mRNA.PUT.fasta.bz2 NtabPIP
Nuphar advena(yellow water lily) Nuphar_advena.mRNA.PUT.fasta.bz2 NadvPIP
Panicum virgatum (switchgrass) Panicum_virgatum.mRNA.PUT.fasta.bz2 PvirPIP
Phaseolus coccineus(scarlet runner) Phaseolus_coccineus.mRNA.PUT.fasta.bz2 PcocPIP
Phaseolus vulgaris (kidney bean) Phaseolus_vulgaris.mRNA.PUT.fasta.bz2 PvulPIP
Poncirus trifoliata(hardy orange) Poncirus_trifoliata.mRNA.PUT.fasta.bz2 PotrPIP
Populus tremula (european aspen) Populus_tremula.mRNA.PUT.fasta.bz2 PtrePIP
Populus tremula x Populus tremuloides(aspen) Populus_tremula_x_Populus_tremuloides.mRNA.PUT.fasta.bz2 PPttPIP
Populus tremuloides (quaking aspen) Populus_tremuloides.mRNA.PUT.fasta.bz2 PoptPIP
Populus trichocarpa (western balsam poplar) Populus_trichocarpa.mRNA.PUT.fasta.bz2 PtriPIP
Populus trichocarpa x Populus deltoides(hybrid poplar) Populus_trichocarpa_x_Populus_deltoides.mRNA.PUT.fasta.bz2 PPtdPIP
Prunus persica (peach) Prunus_persica.mRNA.PUT.fasta.bz2 PperPIP
Saccharum officinarum (sugarcane) Saccharum_officinarum.mRNA.PUT.fasta.bz2 SoffPIP
Secale cereale (rye) Secale_cereale.mRNA.PUT.fasta.bz2 ScerPIP
Solanum tuberosum (potato) Solanum_tuberosum.mRNA.PUT.fasta.bz2 StubPIP
Sorghum bicolor (sorghum) Sorghum_bicolor.mRNA.PUT.fasta.bz2 SbicPIP
Sorghum propinquum(sorghum) Sorghum_propinquum.Version_number.txt.bz2 SproPIP
Taraxacum officinale(common dandelion) Taraxacum_officinale.mRNA.PUT.fasta.bz2 ToffPIP
Trifolium pratense(red clover) Trifolium_pratense.mRNA.PUT.fasta.bz2 TpraPIP
Triticum aestivum (bread wheat) Triticum_aestivum.mRNA.PUT.fasta.bz2 TaesPIP
Triticum monococcum (one-grained wheat) Triticum_monococcum.mRNA.PUT.fasta.bz2 TmonPIP
Vitis vinifera (wine grape) Vitis_vinifera.mRNA.PUT.fasta.bz2 VvinPIP
Zea mays(corn) Zea_mays.mRNA.PUT.fasta.bz2 ZmayPIP
Zingiber officinale(garden ginger) Zingiber_officinale.mRNA.PUT.fasta.bz2 ZoffPIP
Zinnia elegans(zinnia) Zinnia_elegans.mRNA.PUT.fasta.bz2 ZelePIP
Pinus taeda (loblolly pine) Pinus_taeda.mRNA.PUT.fasta PtaePIP

  

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