Download-PIP markers

PIP marker database download

The data in this database are freely available for all academic and non-commercial users. Commercial users are kindly requested to contact us for details of possible licencing arrangements. You can download the data as follows:

Rice (Oryza sativa L. ssp. japonica) intron position and length can be downloaded here

Arabidopsis (Arabidopsis thaliana ecotype Columbia) intron position and length can be downloaded here

PIP markers of each species and corresponding PUTs (PlantGDB-assembled Unique Transcripts) used for developing the PIP markers can be downloaded from the following table by right clicking on the target link and selecting "save as". You can also download all the PIP markers by right clicking the link “All markers” at the bottom of the table. The latest version of PUTs can be downloaded from plantGDB .

Species	PlantGDB-assembled Unique Transcripts	PIP markers
Allium cepa (onion)	Allium_cepa.mRNA.PUT.fasta.bz2	AcepPIP
Antirrhinum majus (snapdragon)	Antirrhinum_majus.mRNA.PUT.fasta.bz2	AmajPIP
Aquilegia formosa x Aquilegia pubescens	Aquilegia_formosa_x_Aquilegia_pubescens.mRNA.PUT.fasta.bz2	AAfpPIP
Beta vulgaris (beet)	Beta_vulgaris.mRNA.PUT.fasta.bz2	BvulPIP
Brassica napus (rape)	Brassica_napus.mRNA.PUT.fasta.bz2	BnapPIP
Brassica rapa (field mustard)	Brassica_rapa.mRNA.PUT.fasta.bz2	BrapPIP
Capsicum annuum (chilli pepper)	Capsicum_annuum.mRNA.PUT.fasta.bz2	CannPIP
Citrus clementina	Citrus_clementina.mRNA.PUT.fasta.bz2	CclePIP
Citrus sinensis (sweet orange)	Citrus_sinensis.mRNA.PUT.fasta.bz2	CsinPIP
Coffea canephora (robusta coffee)	Coffea_canephora.mRNA.PUT.fasta.bz2	CcanPIP
Euphorbia esula (leafy spurge)	Euphorbia_esula.mRNA.PUT.fasta.bz2	EesuPIP
Festuca arundinacea (tall fescue)	Festuca_arundinacea.mRNA.PUT.fasta.bz2	FaruPIP
Glycine max (soybean)	Glycine_max.mRNA.PUT.fasta.bz2	GmaxPIP
Glycine soja (wild soybean)	Glycine_soja.mRNA.PUT.fasta.bz2	GsojPIP
Gossypium arboreum (tree cotton)	Gossypium_arboreum.mRNA.PUT.fasta.bz2	GarbPIP
Gossypium hirsutum (upland cotton)	Gossypium_hirsutum.mRNA.PUT.fasta.bz2	GhirPIP
Gossypium raimondii(cotton)	Gossypium_raimondii.mRNA.PUT.fasta.bz2	GraiPIP
Helianthus annuus (common sunflower)	Helianthus_annuus.mRNA.PUT.fasta.bz2	HannPIP
Helianthus argophyllus(silverleaf sunflower)	Helianthus_argophyllus.mRNA.PUT.fasta.bz2	HargPIP
Helianthus paradoxus(paradox sunflower)	Helianthus_paradoxus.mRNA.PUT.fasta.bz2	HparPIP
Helianthus petiolaris(prairie sunflower)	Helianthus_petiolaris.mRNA.PUT.fasta.bz2	HpetPIP
Hordeum vulgare (barley)	Hordeum_vulgare.mRNA.PUT.fasta.bz2	HvulPIP
Ipomoea nil (japanese morning glory)	Ipomoea_nil.mRNA.PUT.fasta.bz2	InilPIP
Lactuca perennis	Lactuca_perennis.mRNA.PUT.fasta.bz2	LperPIP
Lactuca saligna(willowleaf lettuce)	Lactuca_saligna.mRNA.PUT.fasta.bz2	LsalPIP
Lactuca sativa (garden lettuce)	Lactuca_sativa.mRNA.PUT.fasta.bz2	LsatPIP
Lactuca serriola(prickly lettuce)	Lactuca_serriola.mRNA.PUT.fasta.bz2	LserPIP
Lactuca virosa(bitter lettuce)	Lactuca_virosa.mRNA.PUT.fasta.bz2	LvirPIP
Lotus corniculatus(bird's-foot trefoil)	Lotus_corniculatus.mRNA.PUT.fasta.bz2	LcorPIP
Lotus japonicus	Lotus_japonicus.mRNA.PUT.fasta.bz2	LjapPIP
Lycopersicon esculentum (tomato)	Lycopersicon_esculentum.mRNA.PUT.fasta.bz2	LescPIP
Malus x domestica (apple)	Malus_x_domestica.mRNA.PUT.fasta.bz2	MdomPIP
Medicago truncatula (barrel medic)	Medicago_truncatula.mRNA.PUT.fasta.bz2	MtruPIP
Mesembryanthemum crystallinum (common iceplant)	Mesembryanthemum_crystallinum.mRNA.PUT.fasta.bz2	McryPIP
Nicotiana tabacum (common tobacco)	Nicotiana_tabacum.mRNA.PUT.fasta.bz2	NtabPIP
Nuphar advena(yellow water lily)	Nuphar_advena.mRNA.PUT.fasta.bz2	NadvPIP
Panicum virgatum (switchgrass)	Panicum_virgatum.mRNA.PUT.fasta.bz2	PvirPIP
Phaseolus coccineus(scarlet runner)	Phaseolus_coccineus.mRNA.PUT.fasta.bz2	PcocPIP
Phaseolus vulgaris (kidney bean)	Phaseolus_vulgaris.mRNA.PUT.fasta.bz2	PvulPIP
Poncirus trifoliata(hardy orange)	Poncirus_trifoliata.mRNA.PUT.fasta.bz2	PotrPIP
Populus tremula (european aspen)	Populus_tremula.mRNA.PUT.fasta.bz2	PtrePIP
Populus tremula x Populus tremuloides(aspen)	Populus_tremula_x_Populus_tremuloides.mRNA.PUT.fasta.bz2	PPttPIP
Populus tremuloides (quaking aspen)	Populus_tremuloides.mRNA.PUT.fasta.bz2	PoptPIP
Populus trichocarpa (western balsam poplar)	Populus_trichocarpa.mRNA.PUT.fasta.bz2	PtriPIP
Populus trichocarpa x Populus deltoides(hybrid poplar)	Populus_trichocarpa_x_Populus_deltoides.mRNA.PUT.fasta.bz2	PPtdPIP
Prunus persica (peach)	Prunus_persica.mRNA.PUT.fasta.bz2	PperPIP
Saccharum officinarum (sugarcane)	Saccharum_officinarum.mRNA.PUT.fasta.bz2	SoffPIP
Secale cereale (rye)	Secale_cereale.mRNA.PUT.fasta.bz2	ScerPIP
Solanum tuberosum (potato)	Solanum_tuberosum.mRNA.PUT.fasta.bz2	StubPIP
Sorghum bicolor (sorghum)	Sorghum_bicolor.mRNA.PUT.fasta.bz2	SbicPIP
Sorghum propinquum(sorghum)	Sorghum_propinquum.Version_number.txt.bz2	SproPIP
Taraxacum officinale(common dandelion)	Taraxacum_officinale.mRNA.PUT.fasta.bz2	ToffPIP
Trifolium pratense(red clover)	Trifolium_pratense.mRNA.PUT.fasta.bz2	TpraPIP
Triticum aestivum (bread wheat)	Triticum_aestivum.mRNA.PUT.fasta.bz2	TaesPIP
Triticum monococcum (one-grained wheat)	Triticum_monococcum.mRNA.PUT.fasta.bz2	TmonPIP
Vitis vinifera (wine grape)	Vitis_vinifera.mRNA.PUT.fasta.bz2	VvinPIP
Zea mays(corn)	Zea_mays.mRNA.PUT.fasta.bz2	ZmayPIP
Zingiber officinale(garden ginger)	Zingiber_officinale.mRNA.PUT.fasta.bz2	ZoffPIP
Zinnia elegans(zinnia)	Zinnia_elegans.mRNA.PUT.fasta.bz2	ZelePIP
Pinus taeda (loblolly pine)	Pinus_taeda.mRNA.PUT.fasta	PtaePIP