Since Jan. 2024



Species Papers DOI
Datura wrightii Goldberg et al., A de novo long-read genome assembly of the sacred datura plant (Datura wrightii) reveals a role of tandem gene duplications in the evolution of herbivore-defense response. BMC Genomics. 2024. 10.1186/s12864-023-09894-1
Escallonia rubra; E. herrerae Chanderbali et al., Draft genome assemblies for two species of Escallonia (Escalloniales). BMC Genomic Data. 2024. 10.1186/s12863-023-01186-7
Phanera championii Lu et al., Haplotype-resolved genome assembly of Phanera championii reveals molecular mechanisms of flavonoid synthesis and adaptive evolution. The Plant Journal. 2024. 10.1111/tpj.16620
Leonurus japonicus Wang et al., De novo chromosome-level genome assembly of Chinese motherwort (Leonurus japonicus ). Scientific Data. 2024 10.1038/s41597-023-02901-w
Forsythia viridissima Pei et al., The golden bell flower genome provides insights into its evolutionary history and reveals the potential genomic bases of its ecological divergence from weeping forsythia. Scientia Horticulturae. 2024 10.1016/j.scienta.2023.112527
Cannabis sativa Wei et al., The reference genome of seed hemp (Cannabis sativa ) provides new insights into fatty acid and vitamin E synthesis. Plant Communications. 2024 10.1016/j.xplc.2023.100718
Persicaria maackiana Kim et al., Genome assembly and microsatellite marker development using Illumina and PacBio sequencing in Persicaria maackiana (Polygonaceae) from Korea. Genes Genomics. 2024 10.1007/s13258-023-01479-2
Ambrosia trifida Yin et al., Chromosome-level genome of Ambrosia trifidaprovides insights into adaptation and the evolution of pollen allergen. International Journal of Biological Macromolecules. 2024 10.1016/j.ijbiomac.2024.129232
Magnolia sinica Cai et al., The chromosome-scale genome of Magnolia sinica (Magnoliaceae) provides insights into the conservation of plant species with extremely small populations (PSESP). GigaScience. 2024 10.1093/gigascience/giad110
Acer truncatum Zhang et al., High-quality maple genome reveals duplication-facilitated leaf color diversity. Plant Science. 2024 10.1016/j.plantsci.2023.111917
Physcomitrium patensBi et al., Near telomere-to-telomere genome of the model plant Physcomitrium patens. Nature Plants. 202410.1038/s41477-023-01614-7
Huperzia asiatica , Diphasiastrum complanatumLi et al., Extraordinary preservation of gene collinearity over three hundred million years revealed in homosporous lycophytes. PNAS. 202410.1073/pnas.2312607121
Solanum tuberosumMari et al., Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspring data. Genome Biology. 202410.1186/s13059-023-03160-z
Nicotiana tabacum , Nicotiana sylvestris , Nicotiana tomentosiformisSierro et al., Chromosome-level genome assemblies of Nicotiana tabacum, Nicotiana sylvestris, and Nicotiana tomentosiformis. Scientific Data. 202410.1038/s41597-024-02965-2
Fraxinus americana , F. nigra , F. pennsylvanicaFleck et al., High quality genomes produced from single MinION flow cells clarify polyploid and demographic histories of critically endangered Fraxinus (ash) species. Communications Biology. 202410.1038/s42003-023-05748-4
Cryptocoryne crispatulaQian et al., The chromosome-level genome of the submerged plant Cryptocoryne crispatula provides insights into the terrestrial-freshwater transition in Araceae. DNA Research. 202410.1093/dnares/dsae003
Nicotiana tabacum , N. benthamianaWang et al., High-quality assembled and annotated genomes of Nicotiana tabacum and Nicotiana benthamiana reveal chromosome evolution and changes in defense arsenals. Molecular Plant. 202410.1016/j.molp.2024.01.008
Prymnesium parvumJian et al., Long-read genome sequencing provides novel insights into the harmful algal bloom species Prymnesium parvum. The Science of The Total Environment. 202410.1016/j.scitotenv.2023.168042
Lycium barbarumZhao et al., Metabolite-based genome-wide association studies enable the dissection of the genetic bases of flavonoids, betaine and spermidine in wolfberry (Lycium). Plant Biotechnology Journal. 202410.1111/pbi.14278
Rhus chinensisNi et al., A chromosome-scale genome of Rhus chinensis Mill. provides new insights into plant-insect interaction and gallotannins biosynthesis. The Plant Journal. 202410.1111/tpj.16631
Prunella vulgarisZhang et al., Chromosome-level genome assembly of Prunella vulgaris L. provides insights into pentacyclic triterpenoid biosynthesis. The Plant Journal. 202410.1111/tpj.16629
Glycine maxHuang et al., A complete reference genome for the soybean cv. Jack. Plant Communications. 202410.1016/j.xplc.2023.100765
Sonneratia alba , Lagerstroemia speciosaFeng et al., Genomic evidence for rediploidization and adaptive evolution following the whole-genome triplication. Nature Communications. 202410.1038/s41467-024-46080-7
Anisodus tanguticusSong et al., Chromosome level genome assembly of endangered medicinal plant Anisodus tanguticus. Scientific Data. 202410.1038/s41597-024-03007-7
Tinospora cordifoliaMahajan et al., Genome sequencing and functional analysis of a multipurpose medicinal herb Tinospora cordifolia (Giloy). Scientific Reports. 202410.1038/s41598-024-53176-z
Stephania japonicaLiu et al., The genome of Stephania japonica provides insights into the biosynthesis of cepharanthine. Cell Reports. 202410.1016/j.celrep.2024.113832
Gossypium hirsutum , G. barbadenseChang et al., High-quality Gossypium hirsutum and Gossypium barbadense genome assemblies reveal the landscape and evolution of centromeres. Plant Communications. 202410.1016/j.xplc.2023.100722
Euryodendron excelsumWang et al., Chromosome-level genome assembly and demographic history of Euryodendron excelsum in monotypic genus endemic to China. DNA Research. 202410.1093/dnares/dsad028
Bombax ceiba , Ceiba pentandraShao et al., High-quality genomes of Bombax ceiba and Ceiba pentandra provide insights into evolution of Malvaceae species and differentiation of natural fiber. Plant Communications. 202410.1016/j.xplc.2024.100832
Setaria italicaHe et al., A complete reference genome assembly for foxtail millet and Setaria-db, a comprehensive database for Setaria. Molecular Plant. 202410.1016/j.molp.2023.12.017
Agave hybridYang et al., A chromosome-level genome assembly of Agave hybrid NO.11648 provides insights into the CAM photosynthesis. Horticulture Research. 202410.1093/hr/uhad269
Spiraea crenataLevente Laczkó et al., The draft genome of Spiraea crenata L. (Rosaceae) – the first complete genome in tribe Spiraeeae. Scientific Data. 202410.1038/s41597-024-03046-0
Eremochloa ophiuroidesWang et al., Molecular Characterization and Phylogenetic Analysis of Centipedegrass [ Eremochloa ophiuroides (Munro) Hack.] Based on the Complete Chloroplast Genome Sequence. Current Issues In Molecular Biology. 202410.3390/cimb46020106
Gossypium purpurascensCheng et al., Gossypium purpurascens genome provides insight into the origin and domestication of upland cotton. Journal of Advanced Research. 202410.1016/j.jare.2023.03.006
Malus hybridLi et al.,Chromosomal level genome assemblies of two Malus crabapple cultivars Flame and Royalty. Scientific Data. 202410.1038/s41597-024-03049-x
Brassica oleraceaGuo et al., A graph-based pan-genome of Brassica oleracea provides new insights into its domestication and morphotype diversification. Plant Communications. 202410.1016/j.xplc.2023.100791
Quercus tomentellaMead et al., The genome assembly of Island Oak (Quercus tomentella), a relictual island tree species. Journal of Heredity. 202410.1093/jhered/esae002
Penthorum chinenseWang et al., Insights into the Superrosids phylogeny and flavonoid synthesis from the telomere-to-telomere gap-free genome assembly of Penthorum chinense Pursh. Horticulture Research. 202410.1093/hr/uhad274
Ligusticum chuanxiongNie et al., Haplotype-phased genome unveils the butylphthalide biosynthesis and homoploid hybrid origin of Ligusticum chuanxiong. Science Advances. 202410.1126/sciadv.adj6547
Oryza sativaSedeek et al., Multitrait engineering of Hassawi red rice for sustainable cultivation. Plant Science. 202410.1016/j.plantsci.2024.112018
Mangifera indicaWijesundara et al., A chromosome-level genome of mango exclusively from long-read sequence data. The Plant Genome. 202410.1002/tpg2.20441
Brasenia schreberiWu et al., Draft genome of Brasenia schreberi, a worldwide distributed and endangered aquatic plant. BMC Genomic Data. 202410.1186/s12863-024-01212-2
Platycarya strobilaceaZhou et al., Chromosome-level genome assembly of Platycarya strobilacea. Scientific Data. 202410.1038/s41597-024-03107-4
Juglans regia L.Han et al., A haplotype-resolved genome provides insight into allele-specific expression in wild walnut (Juglans regia L.). Scientific Data. 202410.1038/s41597-024-03096-4
Torenia fournieriSong et al., Genome assembly and multi-omic analyses reveal the mechanisms underlying flower color formation in Torenia fournieri. The Plant Genome. 202410.1002/tpg2.20439
Idesia polycarpaZuo et al., The Idesia polycarpa genome provides insights into its evolution and oil biosynthesis. Cell Reports. 202410.1016/j.celrep.2024.113909
Bolboschoenus planiculmisNing et al., Chromosome-scale genome assembly for clubrush (Bolboschoenus planiculmis) indicates a karyotype with high chromosome number and heterogeneous centromere distribution. Genome Biology and Evolution. 202410.1093/gbe/evae039
Notholithocarpus densiflorusCai et al., Assembly and analysis of the genome of Notholithocarpus densiflorus. G3-Genes Genomes Genetics. 202410.1093/g3journal/jkae043
Glycine max (L.) Merr.Liu et al., De novo genome assembly of a high-protein soybean variety HJ117. BMC Genomic Data. 202410.1186/s12863-024-01213-1
Poa trivialisBrunharo et al., Chromosome-scale genome assembly of Poa trivialis and population genomics reveal widespread gene flow in a cool-season grass seed production system. Plant Direct. 202410.1002/pld3.575
Pontederia crassipesHuang et al., A reference genome of Commelinales provides insights into the commelinids evolution and global spread of water hyacinth (Pontederia crassipes). GigaScience. 202410.1093/gigascience/giae006
Corydalis yanhusuoXu et al., Haplotype-resolved genome assembly of Corydalis yanhusuo, a traditional Chinese medicine with unusual telomere motif. Horticulture Research. 202410.1093/hr/uhad296
Onobrychis viciifoliaHe et al., A chromosome-level genome assembly for Onobrychis viciifolia reveals gene copy number gain underlying enhanced proanthocyanidin biosynthesis. Communications Biology. 202410.1038/s42003-023-05754-6
Fragaria moupinensisQiao et al., Genomic analyses provide insights into sex differentiation of tetraploid strawberry (Fragaria moupinensis). Plant Biotechnology Journal. 202410.1111/pbi.14286
Saururus chinensisXue et al., The Saururus chinensis genome provides insights into the evolution of pollination strategies and herbaceousness in magnoliids. The Plant Journal. 202410.1111/tpj.16097
Cryptotaenia japonicaLiu et al., The high-quality genome of Cryptotaenia japonica and comparative genomics analysis reveals anthocyanin biosynthesis in Apiaceae. The Plant Journal. 202410.1111/tpj.16628
Mentha suaveolensYang et al., A haplotype-resolved gap-free genome assembly provides novel insight into monoterpenoid diversification in Mentha suaveolens ‘Variegata’. Horticulture Research. 202410.1093/hr/uhae022
Hippophae gyantsensisChen et al., Chromosome-level genome assembly of Hippophae gyantsensis. Scientific Data. 202410.1038/s41597-024-02909-w
Posidonia oceanica, Cymodocea nodosa, Thalassia testudinum , Zostera marinaMa et al., Seagrass genomes reveal ancient polyploidy and adaptations to the marine environment. Nature Plants. 202410.1038/s41477-023-01608-5
Zygophyllum xanthoxylumMa et al., Genomic analysis reveals phylogeny of Zygophyllales and mechanism for water retention of a succulent xerophyte. Plant Physiology. 202410.1093/plphys/kiae040
Chrysanthemum indicumDeng et al., Genomic insights into the evolution of flavonoid biosynthesis and O-methyltransferase and glucosyltransferase in Chrysanthemum indicum. Cell Reports. 202410.1016/j.celrep.2024.113725
Cissus quadrangularisLi et al., The Cissus quadrangularis genome reveals its adaptive features in arid habitat. Horticulture Research. 202410.1093/hr/uhae038
Hopea hainanensis , H. reticulata , H. chinensis , Parashorea chinensis , Shorea robusta , Dipterocarpus turbinatus , Vatica mangachapoiWang et al., Dipterocarpoidae genomics reveal their demography and adaptations to Asian rainforests. Nature Communications. 202410.1038/s41467-024-45836-5
Camellia japonicaHu et al., Genomics insights into flowering and floral pattern formation: regional duplication and seasonal pattern of gene expression in Camellia. BMC Biology. 202410.1186/s12915-024-01851-y
Lolium multiflorumFlorian et al., High-resolution bulked segregant analysis enables candidate gene identification for bacterial wilt resistance in Italian ryegrass (Lolium multiflorum Lam.). The Plant Journal. 202410.1111/tpj.16693
Psophocarpus tetragonolobusHo et al., A genomic toolkit for winged bean Psophocarpus tetragonolobus. Nature Communications. 202410.1038/s41467-024-45048-x
Rubus rosaefoliusWang et al., Chromosome-scale genome, together with transcriptome and metabolome, provided insights into the evolution and anthocyanin biosynthesis of Rubus rosaefolius Sm. (Rosaceae). Horticulture Research. 202410.1093/hr/uhae064
Calotropis proceraAbdel-Rhman et al., First draft of the nuclear genome assembly and annotation of the multi-stress tolerant desert giant milkweed Calotropis procera. South African Journal of Botany. 202410.1016/j.sajb.2024.01.030
Haberlea rhodopensisGupta et al., The genome of Haberlea rhodopensis provides insights into the mechanisms for tolerance to multiple extreme environments. Cellular and Molecular Life Sciences. 202410.1007/s00018-024-05140-3
Musella lasiocarpaZhao et al., Characterization of O-Methyltransferases in the Biosynthesis of Phenylphenalenone Phytoalexins Based on the Telomere-to-Telomere Gap-less Genome of Musella lasiocarpa. Horticulture Research. 202410.1093/hr/uhae042
Silybum marianumKim et al., Chromosome-level genome assembly of milk thistle (Silybum marianum (L.) Gaertn.). Scientific Data. 202410.1038/s41597-024-03178-3
Ammopiptanthus mongolicusFeng et al., A reference-grade genome of the xerophyte Ammopiptanthus mongolicus sheds light on its evolution history in legumes and drought tolerance mechanisms. Plant Communications. 202410.1016/j.xplc.2024.100891
Annona cherimolaLi et al., The American Cherimoya Genome Reveals Insights into the Intra-Specific Divergence, the Evolution of Magnoliales, and a Putative Gene Cluster for Acetogenin Biosynthesis. Plants. 202410.3390/plants13050636
Thymus mongolicusDang et al., Chromosome-level genome assembly provides insights into the genome evolution and functional importance of the phenylpropanoid–flavonoid pathway in Thymus mongolicus. BMC Genomics. 202410.1186/s12864-024-10202-8
Thymus mandschuricusJia et al., Chromosome-level genome of Thymus mandschuricus reveals molecular mechanism of aroma compounds biosynthesis. Frontiers in Plant Science. 202410.3389/fpls.2024.1368869
Reynoutria multifloraHe et al., The near-complete genome assembly of Reynoutria multiflora reveals the genetic basis of stilbenes and anthraquinones biosynthesis. Journal of Systematics and Evolution. 202410.1111/jse.13068
Arenaria ciliataKozlowski et al., Genome Size in the Arenaria ciliata Species Complex (Caryophyllaceae), with Special Focus on Northern Europe and the Arctic. Plants. 202410.3390/plants13050635
Quercus sichourensis , Q. rexLiu et al., Chromosome-scale genomes of Quercus sichourensis and Quercus rex provide insights into the evolution and adaptation of Fagaceae. Journal of Genetics and Genomics. 202410.1016/j.jgg.2024.03.012
Capsicum chinenseEstrada et al., Draft genome and SSR data mining of a Peruvian landrace of Capsicum chinense, the arnaucho chili pepper. Genetic Resources and Crop Evolution. 202410.1007/s10722-024-01941-4
Lagerstroemia indicaYu et al., Genomic and transcriptomic studies on flavonoid biosynthesis in Lagerstroemia indica. BMC Plant Biology. 202410.1186/s12870-024-04776-4
Zanthoxylum armatumSong et al., Chromosome-level assembly of triploid genome of Sichuan pepper (Zanthoxylum armatum). Horticultural Plant Journal. 202410.1016/j.hpj.2022.12.014
Populus pruinosaSun et al., The chromosome-scale genome and population genomics reveal the adaptative evolution of Populus pruinosa to desertification environment. Horticulture research. 202410.1093/hr/uhae034
Crocus sativusXu et al., Crocus genome reveals the evolutionary origin of crocin biosynthesis.Acta Pharm Sin B. 202410.1016/j.apsb.2023.12.013
Argania spinosaRupp et al., Genome of Argania spinosa L.: insights into oil production and the tocopherol biosynthesis pathway. Genetic Resources and Crop Evolution. 202410.1007/s10722-024-01931-6
Myrica rubraZhang et al., T2T reference genome assembly and genome-wide association study reveal the genetic basis of Chinese bayberry fruit quality. Horticulture Research. 202410.1093/hr/uhae033
Suaeda salsaWang et al., Multi-omics provides insights into genome evolution and betacyanin biosynthesis in halophyte of Suaeda salsa. Journal of Systematics and Evolution. 202410.1111/jse.13064
Aralia elataKim et al., A comprehensive analysis integrating phenotypic assessment uncovering thornless cultivar lineages in Aralia elata. Genomics. 202410.1016/j.ygeno.2024.110824
Mimosa bimucronataJia et al., Haplotype-resolved genome of Mimosa bimucronata revealed insights into leaf movement and nitrogen fixation. BMC Genomics. 202410.1186/s12864-024-10264-8
Teucrium marumSmit et al., The genomic and enzymatic basis for iridoid biosynthesis in cat thyme (Teucrium marum). The Plant Journal. 202410.1111/tpj.16698
Olyra latifolia , Raddia guianensis , Ampelocalamus luodianensis, Hsuehochloa calcarea , Phyllostachys edulis , Rhipidocladum racemiflorum , Otatea glauca , Guadua angustifolia , Melocanna baccifera, Bonia amplexicaulis , Dendrocalamus sinicusMa et al., Genome assemblies of 11 bamboo species highlight diversification induced by dynamic subgenome dominance. Nature Genetics. 202410.1038/s41588-024-01683-0
Pinus albicaulisNeale et al., A Genome Sequence for the Threatened Whitebark Pine. bioRxiv [Preprint]. 202410.1101/2023.11.16.567420
EucalyptusFerguson et al., Plant genome evolution in the genus Eucalyptus driven by structural rearrangements that promote sequence divergence. Genome research. 202410.1101/gr.277999.123
Calophaca sinicaCao et al., Chromosome-level genome assembly and characterization of the Calophaca sinica genome. DNA research. 202410.1093/dnares/dsae011
Menispermum dauricumAn et al., Lineage-Specific CYP80 Expansion and Benzylisoquinoline Alkaloid Diversity in Early-Diverging Eudicots. Advanced Science. 202410.1002/advs.202309990
Musa ornata , M. velutinaXiao et al., Chromosome-level genome assemblies of Musa ornata and M. velutina provide insights into pericarp dehiscence and anthocyanin biosynthesis in banana. Horticulture Research. 202410.1093/hr/uhae079
Pseudoroegneria LibanoticaZhai et al., A chromosome level genome assembly of Pseudoroegneria Libanotica reveals a key Kcs gene involves in the cuticular wax elongation for drought resistance. BMC Genomics. 202410.1186/s12864-024-10140-5
Rheum palmatumZhang et al., A chromosome-level genome reveals genome evolution and molecular basis of anthraquinone biosynthesis in Rheum palmatum. BMC Plant Biology. 202410.1186/s12870-024-04972-2
Nicotiana benthamianaKo et al., High-quality chromosome-level genome assembly of Nicotiana benthamiana. Scientific Data. 202410.1038/s41597-024-03232-0
Theobroma cacaoNousias et al., Three de novo assembled wild cacao genomes from the Upper Amazon. Scientific Data. 202410.1038/s41597-024-03215-1
Citrus australasicaNakandala et al., The genome of Citrus australasica reveals disease resistance and other species specific genes. BMC Plant Biology. 202410.1186/s12870-024-04988-8
Melilotus officinalisMeng et al., Genome assembly of Melilotus officinalis provides a new reference genome for functional genomics. BMC Genomic Data. 202410.1186/s12863-024-01224-y
Solanum lycopersicumMerkulov et al., Long-read sequencing of extrachromosomal circular DNA and genome assembly of a Solanum lycopersicum breeding line revealed active LTR retrotransposons originating from S. Peruvianum L. introgressions. BMC Genomics. 202410.1186/s12864-024-10314-1
Triticum timopheeviiGrewal et al., Chromosome-scale genome assembly of bread wheat's wild relative Triticum timopheevii. Scientific data. 202410.1038/s41597-024-03260-w
Rorippa aquaticaSakamoto et al., A chromosome-level genome assembly for the amphibious plant Rorippa aquatica reveals its allotetraploid origin and mechanisms of heterophylly upon submergence10.1038/s42003-024-06088-7
Ochroma pyramidaleSun et al., Subgenome-aware analyses reveal the genomic consequences of ancient allopolyploid hybridizations throughout the cotton family. PNAS. 202410.1073/pnas.2313921121
Spartina alternifloraHao et al., Genomic and phenotypic signatures provide insights into the wide adaptation of a global plant invader. Plant Communications. 202410.1016/j.xplc.2024.100820
Camellia sinensisLee et al., Selection of Catechin Biosynthesis-Related Genes and Functional Analysis from Chromosome-Level Genome Assembly in C. sinensis L. Variety ‘Sangmok’. International Journal Of Molecular Sciences.202410.3390/ijms25073634
Cotoneaster glaucophyllusMeng et al., Chromosome-scale genome assembly and annotation of Cotoneaster glaucophyllus. Scientific Data. 202410.1038/s41597-024-03246-8
Chlorella sorokiniana , C. pyrenoidosaWang et al., Near telomere-to-telomere genome assemblies of two Chlorella species unveil the composition and evolution of centromeres in green algae. BMC Genomics. 202410.1186/s12864-024-10280-8
Coffea arabicaSalojärvi et al., The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars. Nature Genetics. 202410.1038/s41588-024-01695-w
Saccharum hybrid cultivarBao et al., A chromosomal-scale genome assembly of modern cultivated hybrid sugarcane provides insights into origination and evolution. Nature Communications. 202410.1038/s41467-024-47390-6
Phyllanthus emblica , Sauropus spatulifoliusLi et al., Haplotype-resolved genomes of octoploid species in Phyllanthaceae family reveal a critical role for polyploidization and hybridization in speciation. The Plant Journal. 202410.1111/tpj.16767
Stenogyne calaminthoidesTomlin et al., Allopolyploid origin and diversification of the Hawaiian endemic mints. Nature Communications. 202410.1038/s41467-024-47247-y
Zygnema circumcarinatumFeng et al., Genomes of multicellular algal sisters to land plants illuminate signaling network evolution. Nature Genetics. 202410.1038/s41588-024-01737-3
Pedicularis kansuensisFang et al., Chromosome-level genome assembly of Pedicularis kansuensis illuminates genome evolution of facultative parasitic plant. Molecular Ecology Resources. 202410.1111/1755-0998.13966
Triticum monococcumWang et al., A near-complete genome sequence of einkorn wheat provides insight into the evolution of wheat A subgenomes. Plant communications. 202410.1016/j.xplc.2023.100768
Cinnamomum chagoTao et al., Chromosome-level genome assembly of the threatened resource plant Cinnamomum chago. Scientific Data. 202410.1038/s41597-024-03293-1
Alstonia scholarisChen et al., Chromosome-level Alstonia scholaris genome unveils evolutionary insights into biosynthesis of monoterpenoid indole alkaloids. iScience. 202410.1016/j.isci.2024.109599
Citrus sinensisYang et al., A high-quality chromosome-scale genome assembly of blood orange, an important pigmented sweet orange variety. Scientific Data. 202410.1038/s41597-024-03313-0
Dendrobium nobileLi et al., A high-quality chromosomal-level reference genome of Dendrobium nobile Lindl. provides new insights into the biosynthesis and accumulation of picrotoxane-type sesquiterpenoid alkaloids. Industrial Crops and Products. 202410.1016/j.indcrop.2024.118243
Solanum okadaeAchakkagari et al., The phased Solanum okadae genome and Petota pangenome analysis of 23 other potato wild relatives and hybrids. Scientific Data. 202410.1038/s41597-024-03300-5
Panicum miliaceumLiu et al., Establishment of genome-editing system and assembly of a near-complete genome in broomcorn millet. Journal of integrative plant biology. 202410.1111/jipb.13664
Citrus reticulataWen et al., An integrated multi-omics approach reveals polymethoxylated flavonoid biosynthesis in Citrus reticulata cv. Chachiensis. Nature Communications. 202410.1038/s41467-024-48235-y
Linum trigynumGutiérrez-Valencia et al., Genetic causes and genomic consequences of breakdown of distyly in Linum trigynum. Molecular biology and evolution. 202410.1093/molbev/msae087
Phillyrea angustifoliaCastric et al., The homomorphic self-incompatibility system in Oleaceae is controlled by a hemizygous genomic region expressing a gibberellin pathway gene. Current Biology. 202410.1016/j.cub.2024.03.047
Lespedeza potaniniiYan et al., The genome of Lespedeza potaninii reveals biased subgenome evolution and drought adaptation. Plant Physiology. 202410.1093/plphys/kiae283
Populus pseudoglauca , P. wuana , P. szechuanica , P. yunnanensis , P. simonii , P. rotundifoliaShi et al., The super-pangenome of Populus unveils genomic facets for its adaptation and diversification in widespread forest trees. Molecular Plant. 202410.1016/j.molp.2024.03.009
Gymnocarpos przewalskiiFu et al., Shared xerophytic genes and their re-use in local adaptation to aridity in the desert plant Gymnocarpos przewalskii. Molecular Ecology. 202410.1111/mec.17380
Oryza sativaGreenwood et al., Genome-wide association analysis uncovers rice blast resistance alleles of Ptr and Pia. Communications Biology. 202410.1038/s42003-024-06244-z
Oryza rufipogonHuang et al., Haplotype-resolved gapless genome and chromosome segment substitution lines facilitate gene identification in wild rice. Nature communications. 202410.1038/s41467-024-48845-6
Warburgia ugandensis , Saururus chinensisLuo et al., The chromosome-level genomes of the herbal magnoliids Warburgia ugandensis and Saururus chinensis. Scientific Data. 202410.1038/s41597-024-03229-9
Capsicum annuum , C. rhomboideumChen et al., Two telomere-to-telomere gapless genomes reveal insights into Capsicum evolution and capsaicinoid biosynthesis. Nature Communications. 202410.1038/s41467-024-48643-0
Ancylonema nordenskiöldiiBowles et al., Metagenome-assembled genome of the glacier alga Ancylonema yields insights into the evolution of streptophyte life on ice and land. New Phytologist. 202410.1111/nph.19860
Oldenlandia diffusaGao et al., Telomere-to-telomere genome assembly of Oldenlandia diffusa. DNA Research. 202410.1093/dnares/dsae012
Rosa roxburghiiYang et al.,The chromosome-level genome and functional database accelerate research about biosynthesis of secondary metabolites in Rosa roxburghii. BMC Plant Biology. 202410.1186/s12870-024-05109-1
Ficus hirtaHuang et al., A high-quality chromosome-level genome assembly of Ficus hirta. Scientific Data. 202410.1038/s41597-024-03376-z
Solanum pimpinellifoliumHan et al., Chromosome-level genome assembly of Solanum pimpinellifolium. Scientific Data. 202410.1038/s41597-024-03442-6
Durio zibethinusLi et al., Upgraded durian genome reveals the role of chromosome reshuffling during ancestral karyotype evolution, lignin biosynthesis regulation, and stress tolerance. Science China Life Sciences. 202410.1007/s11427-024-2580-3
Pueraria montana var. lobata , P. thomsoniiHuang et al., High-integrity Pueraria montana var. lobata genome and population analysis revealed the genetic diversity of Pueraria genus. DNA Research. 202410.1093/dnares/dsae017
Ehretia macrophyllaCheng et al., Haplotype-resolved chromosome-level genome assembly of Ehretia macrophylla. Scientific Data. 202410.1038/s41597-024-03431-9
Malus honanensis × Malus domesticaLi et al., The chromosome-level genome assembly of the dwarfing apple interstock Malus hybrid ‘SH6’. Scientific Data. 202410.1038/s41597-024-03405-x
Frankliniella occidentalisSong et al., Chromosome-level genome assembly of the western flower thrips Frankliniella occidentalis. Scientific Data. 202410.1038/s41597-024-03438-2
Physaria fendleriJohnston et al., First draft reference genome and annotation of the alternative oil species Physaria fendleri. G3 (Bethesda). 202410.1093/g3journal/jkae114
Chenopodium berlandieriMaughan et al., North American pitseed goosefoot (Chenopodium berlandieri) is a genetic resource to improve Andean quinoa (C. quinoa). Scientific Reports. 202410.1038/s41598-024-63106-8
Physcomitrellopsis africanaVuruputoor et al., Crossroads of assembling a moss genome: navigating contaminants and horizontal gene transfer in the moss Physcomitrellopsis africana. G3 (Bethesda). 202410.1093/g3journal/jkae104
Vitis viniferaDjari et al., Haplotype-resolved genome assembly and implementation of VitExpress, an open interactive transcriptomic platform for grapevine. PNAS. 202410.1073/pnas.2403750121
Ottelia alismoidesWang et al., Genome assembly of Ottelia alismoides, a multiple-carbon utilisation aquatic plant. BMC Genomic Data. 202410.1186/s12863-024-01230-0
Cucumis melo L.Chen et al., A wild melon reference genome provides novel insights into the domestication of a key gene responsible for melon fruit acidity. Theoretical and Applied Genetics. 202410.1007/s00122-024-04647-4
Michelia albaJiang et al., A high-quality haplotype genome of Michelia alba DC reveals differences in methylation patterns and flower characteristics. Molecular Horticulture. 202410.1186/s43897-024-00098-z
Dasiphora fruticosaYang et al., Signatures of Adaptation and Purifying Selection in Highland Populations of Dasiphora fruticosa. Molecular biology and evolution. 202410.1093/molbev/msae099
Carex breviculmisYuan et al., The genome assembly of Carex breviculmis provides evidence for its phylogenetic localization and environmental adaptation. Annals of botany. 202410.1093/aob/mcae085
Salvia rosmarinusLai et al., High-quality chromosome-level genome assembly and multi-omics analysis of rosemary (Salvia rosmarinus) reveals new insights into the environmental and genome adaptation. Plant biotechnology journal. 202410.1111/pbi.14305
Brachypodium hybridum , B. distachyon , B. staceiChen et al., Three near-complete genome assemblies reveal substantial centromere dynamics from diploid to tetraploid in Brachypodium genus. Genome biology. 202410.1186/s13059-024-03206-w
Actinidia argutaLi et al., Genome assembly of autotetraploid Actinidia arguta highlights adaptive evolution and enables dissection of important economic traits. Plant communications. 202410.1016/j.xplc.2024.100856
Cucumis melo L.Mo et al., Complete genome assembly provides a high-quality skeleton for pan-NLRome construction in melon.The Plant journal : for cell and molecular biology. 202410.1111/tpj.16705
Gynostemma pentaphyllumYun et al., Insights into dammarane-type triterpenoid saponin biosynthesis from the telomere-to-telomere genome of Gynostemma pentaphyllum. Plant Communications. 202410.1016/j.xplc.2024.100932
Cucurbita maximaZeng et al., Complete genome assembly provides insights into centromere architecture of pumpkin (Cucurbita maxima). Plant communications. 202410.1016/j.xplc.2024.100935
Ziziphus jujubaLi et al., Two haplotype-resolved T2T reference genomes for Ziziphus jujuba and Z. jujuba var. spinosa provide new insights into the domestication of jujube. Horticulture research. 202410.1093/hr/uhae071
Sorghum bicolorBao et al., Telomere-to-telomere genome assemblies of two Chinese Baijiu-brewing sorghum landraces. Plant Communications. 202410.1016/j.xplc.2024.100933
Panax ginsengSong et al., Telomere-to-telomere reference genome for Panax ginseng highlights the evolution of saponin biosynthesis. Horticulture Research. 202410.1093/hr/uhae107
Ficus hispidaLiao et al., A telomere-to-telomere reference genome of ficus (Ficus hispida) provides new insights into sex determination. Horticulture Research. 202410.1093/hr/uhad257
Dianthus caryophyllusLan et al., The haplotype-resolved telomere-to-telomere carnation (Dianthus caryophyllus) genome reveals the correlation between genome architecture and gene expression. Horticulture Research. 202410.1093/hr/uhad244
Glycine maxJia et al., Telomere-to-telomere genome assemblies of cultivated and wild soybean provide insights into evolution and domestication under structural variation. Plant communications. 202410.1016/j.xplc.2024.100919
Cerasus speciosaFujiwara et al., Decoding the Centromeric Region with a Near Complete Genome Assembly of the Oshima Cherry Cerasus speciosa. bioRxiv [Preprint]. 202410.1101/2024.06.17.599445
Forsythia suspensaCui et al., The gap-free genome of Forsythia suspensa illuminates the intricate landscape of centromeres. Horticulture Research. 202410.1093/hr/uhae185
Persea americana Mill.Yang et al., A telomere-to-telomere gap-free reference genome assembly of avocado provides useful resources for identifying genes related to fatty acid biosynthesis and disease resistance. Horticulture Research. 202410.1093/hr/uhae119
Lactuca sativa L.Wang et al., The complete telomere-to-telomere genome assembly of lettuce. Plant Communications. 202410.1016/j.xplc.2024.101011
Sorghum bicolorDeng et al., A complete assembly of the sorghum BTx623 reference genome. Plant Communications. 202410.1016/j.xplc.2024.100977
Oxyria digyna , Cochlearia groenlandicaKim et al., Whole-genome sequencing of 13 Arctic plants and draft genomes of Oxyria digyna and Cochlearia groenlandica. Scientific Data. 202410.1038/s41597-024-03569-6
Brassica napusZhao et al., Chromosome-scale genome assembly-assisted identification of for improvement of plant architecture and yield heterosis. Plant Communications. 202410.1016/j.xplc.2024.100854
Euphorbia tirucalliWei et al., Chromosome-level genome assembly of Euphorbia tirucalli (Euphorbiaceae), a highly stress-tolerant oil plant. Scientific Data. 202410.1038/s41597-024-03503-w
Orobanche coerulescensKim et al., Chromosome-level genome assembly of Korean holoparasitic plants, Orobanche coerulescens. Scientific Data. 202410.1038/s41597-024-03207-1
Tinospora sagittataAlami et al., Chromosome-scale genome assembly of medicinal plant Tinospora sagittata (Oliv.) Gagnep. from the Menispermaceae family. Scientific Data. 202410.1038/s41597-024-03315-y
Lepidium apetalumYan et al., A chromosome-level genome assembly and annotation of the medicinal plant Lepidium apetalum. BMC Genomic Data. 202410.1186/s12863-024-01243-9
Taihangia rupestris var. ciliataLi et al., Chromosome-level genome assembly of a cliff plant Taihangia rupestris var. ciliata provides insights into its adaptation and demographic history. BMC Plant Biology. 202410.1186/s12870-024-05322-y
Platanus × acerifoliaYan et al., Genome evolution of the ancient hexaploid Platanus × acerifolia (London planetree). PNAS. 202410.1073/pnas.2319679121
Hippophae rhamnoidesYang et al., Chromosome-level genome assembly of Hippophae rhamnoides variety. Scientific Data. 202410.1038/s41597-024-03549-w
Panicum miliaceum L.Wang et al., A complete reference genome of broomcorn millet. Scientific Data. 202410.1038/s41597-024-03489-5
Oryza sativaWei et al., Genomic investigation of 18,421 lines reveals the genetic architecture of rice. Science. 202410.1126/science.adm8762
Cnidium monnieriWang et al., Chromosome-level genome assembly of Cnidium monnieri, a highly demanded traditional Chinese medicine. Scientific Data. 202410.1038/s41597-024-03523-6
Cyathus ollaXie et al., Genome-wide characterization and metabolite profiling of Cyathus olla: insights into the biosynthesis of medicinal compounds. BMC Genomics. 202410.1186/s12864-024-10528-3
Kmeria septentrionalisShi et al., A high-quality chromosome-level genome assembly of the endangered tree Kmeria septentrionalis. Scientific Data. 202410.1038/s41597-024-03617-1
Castanea sativa Mill.Bianco et al., The de novo, chromosome-level genome assembly of the sweet chestnut (Castanea sativa Mill.) Cv. Marrone Di Chiusa Pesio. BMC Genomic Data. 202410.1186/s12863-024-01245-7
Gossypium arboreumSun et al., Chromosome-level genome assembly and annotation of a potential model organism Gossypium arboreum ZB-1. Scientific Data. 202410.1038/s41597-024-03481-z
Rhodomyrtus tomentosaYang et al., Genomic analysis based on chromosome-level genome assembly reveals Myrtaceae evolution and terpene biosynthesis of rose myrtle. BMC Genomics. 202410.1186/s12864-024-10509-6
Chrysanthemum nankingenseJiang et al., An improved genome assembly of Chrysanthemum nankingense reveals expansion and functional diversification of terpene synthase gene family. BMC Genomics. 202410.1186/s12864-024-10498-6
Schoenoplectus tabernaemontaniLi et al., Chromosome-Scale Genome Assembly for Soft-Stem Bulrush (Schoenoplectus tabernaemontani) Confirms a Clade-Specific Whole-Genome Duplication in Cyperaceae. Genome Biology and Evolution. 202410.1093/gbe/evae141
Aquilaria yunnanensisLi et al., Chromosome-level genome assembly of Aquilaria yunnanensis. Scientific Data. 202410.1038/s41597-024-03635-z
Vernicia montanaLi et al., Genome assembly and resequencing shed light on evolution, population selection, and sex identification in Vernicia montana. Horticulture Research. 202410.1093/hr/uhae141
Prunus conradinaeJiu et al., Chromosome-level genome assembly provides insights into the genetic diversity, evolution, and flower development of Prunus conradinae. Molecular horticulture. 202410.1186/s43897-024-00101-7
Gentiana stramineaGyab Ala et al., Insights from the first chromosome-level genome assembly of the alpine gentian Gentiana straminea Maxim. (Insight from genome assembly of Gentiana straminea). DNA Research. 202410.1093/dnares/dsae022
Vaccinium floribundumAlbuja-Quintana et al., Genome Report: First reference genome of Vaccinium floribundum Kunth, an emblematic Andean species. G3 (Bethesda, Md.), 202410.1093/g3journal/jkae136
Hibiscus sabdariffaKim et al., Genome assembly of Hibiscus sabdariffa L. provides insights into metabolisms of medicinal natural products. G3 (Bethesda, Md.), 202410.1093/g3journal/jkae134
Luffa acutangulaHuang et al., Genome Assembly and Structural Variation Analysis of Luffa acutangula Provide Insights on Flowering Time and Ridge Development. Plants. 202410.3390/plants13131828
Prunus pseudocerasusJiu et al., Haplotype-resolved genome assembly for tetraploid Chinese cherry (Prunus pseudocerasus) offers insights into fruit firmness. Horticulture research. 202410.1093/hr/uhae142
Fagopyrum dibotrysZheng et al., Genomics and resequencing of Fagopyrum dibotrys from different geographic regions reveals species evolution and genetic diversity. Frontiers in plant science. 202410.3389/fpls.2024.1380157
Suaeda salsaCui et al., Combined genome and transcriptome provides insight into the genetic evolution of an edible halophyte Suaeda salsa adaptation to high salinity. Molecular ecology. 202410.1111/mec.17457
Triticum aestivum L.Liu et al., Chromosome-level assembly of the synthetic hexaploid wheat-derived cultivar Chuanmai 104. Scientific Data. 202410.1038/s41597-024-03527-2
Chrysanthemum indicumHou et al., The haplotype-resolved genome of diploid Chrysanthemum indicum unveils new acacetin synthases genes and their evolutionary history. The Plant Journal. 202410.1111/tpj.16854
Oryza malampuzhaensis ，O. minuta ，O. alta ，O. grandiglumis ，O. latifolia ，O. coarctata , O. schlechteri ， O. longiglumis , O. ridleyi , O. australiensis , O. meyerianaFornasiero et al., Oryza genome evolution through a tetraploid lens. bioRxiv [Preprint]. 202410.1101/2024.05.29.596369
Sesbania cannabinaLuo et al., Telomere-to-telomere genome of the allotetraploid legume Sesbania cannabina reveals transposon-driven subgenome divergence and mechanisms of alkaline stress tolerance. Science China. Life sciences. 202410.1007/s11427-023-2463-y
Sorghum bicolorDing et al., A telomere-to-telomere genome assembly of Hongyingzi, a sorghum cultivar used for Chinese Baijiu production. The Crop Journal. 202410.1016/j.cj.2024.02.011
Prunus avium L.cv.TietonZhang et al., Insights into the evolution and fruit color change-related genes of chromosome doubled sweet cherry from an updated complete T2T genome assembly. iMetaOmics. 202410.1002/imo2.13
Ananas comosusFeng et al., The pineapple reference genome: Telomere-to-telomere assembly, manually curated annotation, and comparative analysis. Journal of Integrative Plant Biology. 202410.1111/jipb.13748
Papaver somniferum , P. rhoeas , P. setigerum , P. bracteatumGao et al., The centromere landscapes of four karyotypically diverse Papaver species provide insights into chromosome evolution and speciation. Cell Genomics. 202410.1016/j.xgen.2024.100626
Trichosanthes truncataHu et al.,Chromosome-level assembly and evolution analysis of the Trichosanthes truncata genome. Scientific Data. 202410.1038/s41597-024-03608-2
Arabidopsis thalianaKileeg et al., Chromosome-Scale Assembly and Annotation of Eight Arabidopsis thaliana Ecotypes. Genome Biology and Evolution. 202410.1093/gbe/evae169
Vicia sativa ssp. amphicarpaLi et al., The genome of Vicia sativa ssp. amphicarpa provides insights into the role of terpenoids in antimicrobial resistance within subterranean fruits. The Plant Journal. 202410.1111/tpj.16939
Dracaena cambodianaChen et al., Chromosome-level and haplotype-resolved genome assembly of Dracaena cambodiana (Asparagaceae). Scientific Data. 202410.1038/s41597-024-03670-w
Cucumis sativusGuan et al., A near-complete cucumber reference genome assembly and Cucumber-DB, a multi-omics database. Molecular Plant. 202410.1016/j.molp.2024.06.012
Brassica rapaZhou et al., The complexity of structural variations in Brassica rapa revealed by assembly of two complete T2T genomes. Science Bulletin. 202410.1016/j.scib.2024.03.030
Flueggea virosaChen et al., Chromosome-level genome assembly and annotation of Flueggea virosa (Phyllanthaceae). Scientific Data. 202410.1038/s41597-024-03681-7
Striga hermonthicaKuijer et al., Chromosome-scale pearl millet genomes reveal CLAMT1b as key determinant of strigolactone pattern and Striga susceptibility. Nature Communications. 202410.1038/s41467-024-51189-w
Phaseolus vulgaris L.Cortinovis et al., Adaptive gene loss in the common bean pan-genome during range expansion and domestication. Nature Communications. 202410.1038/s41467-024-51032-2
Trifolium repens L.Kuo et al., De novo genome assembly of white clover (Trifolium repens L.) reveals the role of copy number variation in rapid environmental adaptation. BMC Biology logo. 202410.1186/s12915-024-01962-6
Reaumuria soongaricaSong et al., Chromosome-level genome assembly and annotation of xerophyte secretohalophyte Reaumuria soongarica. Scientific Data. 202410.1038/s41597-024-03644-y
Piper longum L.Mathew et al., The draft genome of Piper longum L.. Crop Science. 202410.1002/csc2.21313
Drepanocaryum sewerzowii , Marmoritis complanataSmit et al., Genome Report: Pseudomolecule-scale genome assemblies of Drepanocaryum sewerzowii and Marmoritis complanata. G3 (Bethesda, Md.). 202410.1093/g3journal/jkae172
Hygrophila difformisLi et al., Water wisteria genome reveals environmental adaptation and heterophylly regulation in amphibious plants. Plant, cell & environment. 202410.1111/pce.15050
Pyrus sinkiangensis YuXia et al., Chromosome-level genome provides new insight into the overwintering process of Korla pear (Pyrus sinkiangensis Yu). BMC Plant Biology. 202410.1186/s12870-024-05490-x
Elymus sibiricusShen et al., Chromosome-scale assembly of the wild cereal relative Elymus sibiricus. Scientific Data. 202410.1038/s41597-024-03622-4
Oryza sativaYang et al., Genomic and transcriptomic analyses of the elite rice variety Huizhan provide insight into disease resistance and heat tolerance. Genomics. 202410.1016/j.ygeno.2024.110915
Sorghum bicolor (L.) MoenchWang et al., High-quality chromosome scale genome assemblies of two important Sorghum inbred lines, Tx2783 and RTx436. NAR genomics and bioinformatics. 202410.1093/nargab/lqae097
Ophrys sphegodesRusso et al., Genome of the early spider-orchid Ophrys sphegodes provides insights into sexual deception and pollinator adaptation. Nature Communications. 202410.1038/s41467-024-50622-4
Sorghum bicolorLi et al., Telomere-to-telomere genome assembly of sorghum. Scientific Data. 202410.1038/s41597-024-03664-8
Gossypium raimondiiHuang et al., A telomere-to-telomere cotton genome assembly reveals centromere evolution and a Mutator transposon-linked module regulating embryo development. Nature Genetics. 202410.1038/s41588-024-01877-6
Eleocharis dulcisChen et al., Telomere-to-telomere genome assembly of Eleocharis dulcis and expression profiles during corm development. Scientific Data. 202410.1038/s41597-024-03717-y
Sinojackia xylocarpaZhu et al., The jacktree genome and population genomics provides insights for the mechanisms of the germination obstacle and the conservation of endangered ornamental plants. Horticulture research. 202410.1093/hr/uhae166
Rubus leucanthusWu et al., A high-quality genome assembly reveals adaptations underlying glossy, wax-coated leaves in the heat-tolerant wild raspberry Rubus leucanthus. DNA Research. 202410.1093/dnares/dsae024
Boehmeria nivea (L.) Gaudich.Wu et al., Genomic variation, environmental adaptation, and feralization in ramie, an ancient fiber crop. Plant Communications. 202410.1016/j.xplc.2024.100942
Rhododendron nivale subsp. borealeLyu et al., The first high-altitude autotetraploid haplotype-resolved genome assembled (Rhododendron nivale subsp. boreale) provides new insights into mountaintop adaptation. GigaScience. 202410.1093/gigascience/giae052
Salix babylonica ， S. dunniiHe et al.,Allopolyploidization from two dioecious ancestors leads to recurrent evolution of sex chromosomes. Nature Communications. 202410.1038/s41467-024-51158-3
Atractylodes lanceaZhang et al., Genome resequencing reveals the genetic basis of population evolution, local adaptation, and rewiring of the rhizome metabolome in Atractylodes lancea. Horticulture research. 202410.1093/hr/uhae167








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