Education

• Ph.D. in Statistics and Genetics, 1989

Department of Statistics, NC State University, Raleigh, U.S.A.

• M.S. in Genetics and Plant Breeding, 1982

Positions Held

• Vice President, Zhejiang University, 2005-2009
• Director, Institute of Bioinformatics, 2001-Current
• Dean, College of Agricultural and Biotechnology at Zhejiang University, 1999-2005.
• Vice President of Zhejiang Agricultural University, 1994-1998
• Professor in Agronomy Department at Zhejiang Agricultural University, 1991-Current
• Associate Professor in Agronomy Department at Zhejiang Agricultural University, 1991-1991
• Postdoctoral Researcher in Department of Statistics at North Carolina State University, 1989-1990
• Research Assistant in Department of Statistics at North Carolina State University, 1987-1989
• Assistant Professor in Agronomy Department at Zhejiang Agricultural University, 1982-1986

Research Interest

Developing genetic models for complex traits;

Proposing analysis methods for experiments especially with unbalanced data;

Developmental quantitative genetics.

Mapping genes for complex traits.

Breeding and genetic analysis of crops for improving quantitative traits.

Publications

1. Zhu J. (1989). Estimation of Genetic Variance Components in the General Mixed Model. Ph.D. Dissertation, NC State University, Raleigh, U.S.A.

2. Zhu J. (1992). Mixed model approaches for estimating genetic variances and covariances. Journal of Biomathematics, 7(1): 1-11. [Full text/PDF]

3. Zhu J. (1993). Methods of predicting genotype value and heterosis for offspring of hybrids. (Chinese). Journal of Biomathematics, 8(1): 32-44. [Full text/PDF]

4. Zhu J. (1993). Mixed model approaches for estimating covariances between two traits with unequal design matrices. Journal of Biomathematics, 8(3): 24-30. [Full text/PDF]

5. Zhu J, D. F. Ji, and F. H. Xu (1993). A genetic approach for analyzing inter-cultivar heterosis in crops. Chinese Journal of Genetics, 20(3): 183-191. [Full text /PDF]

6. Zhu J. and F. H. Xu (1994). A genetic model and its analysis methods for generation means of endosperm traits. (Chinese). Acta Agronomica Sinica, 20(3):264-270. [Full text/PDF]

7. Zhu, J., D. F. Ji, and F. Xu (1993). Genetic analysis for flowering and fruiting of different sites on cotton plant. (Chinese). Acta Gossypii Sinica, 5(1): 25-32. [Full text/PDF]

8. Zhu, J., D. F. Ji, and F. H. Xu (1993). Genetic analysis for flowering and fruiting behaviors of upland cotton (Gossypium hirsutum L.). in: International Symposium for Cotton Genetics and Breeding. 302-312. Chinese Society of Cotton (ed.), Chinese Agricultural Science Press. Beijing.

9. Zhu J., F. H. Xu, and M. G. Lai (1993). Analysis methods for unbalanced data from regional trials of crop variety, analysis for single trait. (Chinese). Journal of Zhejiang Agricultural University, 19:7-13. [Full text/PDF]

10. Zhu J., M. G. Lai, and F. H. Xu (1993). Analysis methods for unbalanced data from regional trial of crop variety: analysis for multiple traits. (Chinese). Journal of Zhejiang Agricultural University, 1993, 19(3): 241-247. [Full text/PDF]

11. Zhu J. (1994). General genetic models and new analysis methods for quantitative traits. (Chinese). Journal of Zhejiang Agricultural University, 20(6): 551-559. [Full text/PDF]

12. Zhu J. and B. S. Weir (1994). Analysis of cytoplasmic and maternal effects: I. a genetic model for diploid plant seeds and animals. Theoretical and Applied Genetics, 89:153-159. [Full text/PDF]

13. Zhu J. and B. S. Weir (1994). Analysis of cytoplasmic and maternal effects: II. genetic models for triploid endosperms. Theoretical and Applied Genetics, 89:160-166. [Full text/PDF]

14. Zhu, J. and B. S. Weir (1994). Clustering populations by mixed linear models. Journal of Biomathematics, 9(3):1-9. [Full text/PDF]

15. Zhu, J. and J. L. Duan (1994). Genetic models and analysis methods for sex-linked and maternal gene effects. Journal of Biomathematics, 9(4):1-9.

16. Zhu J. (1995). Analysis of conditional effects and variance components in developmental genetics. Genetics, 141(4):1633-1639. [Full text/PDF]

17. Zhu J. and B. S. Weir (1996) Mixed model approaches for diallel analysis based on a bio-model. Genetical Research, 68:233-240. [Full text/PDF]

18. Zhu J. (1996). Analytic methods for seed models with genotype × environment interactions. Chinese Journal of Genetics, 23:11-22. [Full text/PDF]

19. Zhu J. and B. S. Weir (1996). Diallel analysis for sex-linked and maternal effects. Theoretical and Applied Genetics, 92(1):1-9. [Full text/PDF]

20. Zhu J., G. J. Wang, Zang R. C. 1997. Genetic analysis on gene effects and GE interaction effects for kernel nutrient quality traits of Upland cotton. Journal of Biomathematics, 12(2):111-120. [Full text/PDF]

21. Zhu J. (1998). Mixed model approaches for mapping quantitative trait loci. Hereditas (Bejing) 20(Sup):137-138. [Full text/PDF]

22. Zhu J. and B.S. Weir (1998). Mixed model approaches for genetic analysis of quantitative traits. In Advanced Topics in Biomathematics: Procceedings of International Conference on Mathematical Biology. pp:321-330. Edited by L. S. Chen, S. G. Ruan, and J. Zhu, World Scientific Publishing Co., Singapore. [Full text/PDF]

23. Zhu J. (1998). Mixed model approaches of mapping genes for complex quantitative traits. In Procceedings of Genetics and Crop Breeding of China. pp19-20. Edited by L. Z. Wang and J. R. Dai. Chinese Agricultural Science and Technology Publication House, Beijing. [Full text/PDF]

24. Zhu J. (1999). Mixed model approaches of mapping genes for complex quantitative traits. Journal of Zhejiang University (Natural Science), 33(3): 327-335. [Full text/PDF]

25. Zhu J. (2000). Mixed linear model approaches for analyzing genetic models of complex quantitative traits. Journal of Zhejiang University (Science), 1(1):78-90. [Full text/PDF]

26. Zhu J. (2000). New approaches of genetic analysis for quantitative traits and their applications in breeding. Journal of Zhejiang University (Agric. & Life Sci.), 26(1):1-6 [Full text/PDF]

27. Lisa A. Levin, J. Zhu, and E. L. Creed (1991). The genetic basis of life-history characters in a polychaete exhibiting planktotrophy and lecithothrophy. Evolution, 45(2): 380-397. [Full text/PDF]

28. Shi C. and J. Zhu (1993). Analysis of seed and maternal genetic effects on milling quality characters in indica hybrid rice. Rice Genetics Newsletter, (1993) 10: 110-111.

29. Shi, C. and J. Zhu (1993). Genetic analysis of milling quality characters in indica hybrid rice. (Chinese). Journal of Biomathematics, 7(4): 37-45.

30. Shi, C. H. and J. Zhu (1994). Analysis of seed and maternal genetic effects for characters of cooking quality in indica rice. (Chinese). Chinese Journal of Rice Science, 8(3):129-134. [Full text/PDF]

31. Wu J. X. and J. Zhu (1994). Methods for predictiong genotypic value and heterosis of crop hybrid offspring in different environments. (Chinese). Journal of Zhejiang Agricultural University, 20:587-592. [Full text/PDF]

32. Duan J. L. and J. Zhu (1994). Analysis of gene effects on some cocoon characters in silkworm moril. Journal of Biomathematics, 9(4): 10-17. [Full text/PDF]

33. Wu J. X., J. Zhu, D. F. Ji and F. H. Xu (1995). Analysis of genetic effects ´ environment interactions for yield traits in upland cotton. (Chinese). Hereditas, 17(5): 1-4. [Full text/PDF]

34. Wu J. X., J. Zhu, et al. (1995). Analysis of agronomic traits and their combined trait for hybrids of indica rice. (Chinese). Chinese J. Rice Science, 9(4): 199-204. [Full text/PDF]

35. Wu J. X., J. Zhu, D. F. Ji, and F. H. Xu (1995). Genetic analysis for heterosis of fiber traits in Upland cotton. (Chinese). Acta Gossypii Sinica, 7(4): 217-222. [Full text/PDF]

36. Liu S. S., G. M. Zhang, and J. Zhu (1995). The influence of temperature variations upon rate of development in insects: an analysis of case studies from the entomological literature. Annals of the Entomological Society of America, 88(2): 107-119. [Full text/PDF]

37. Shi C. H and J. Zhu (1995). Analysis of seed and maternal genetic effects for nutritive quality traits of grain in indica rice. Chinese Journal of Genetics, 20(3): 173-180. [Full text/PDF]

38. Shi C. H. and J. Zhu (1995). Analysis of seed, cytoplasmic, and maternal genetic effects on rice quality traits. International Rice Research Notes, (1995) 20(2): 4.

39. Shi C. H. and J. Zhu (1995). Analysis of seed and maternal genetic effects for nutrient quality characters in hybrids of indica rice. (Chinese). Acta Genetica Sinica, 22(5): 372-339

40. Shi C. H. and J. Zhu (1995). Analysis of seed and maternalgenetic effects for nutritive quality traits of grain in indica rice. Seed Science and Technique,

41. Wu J. X., J. Zhu, D. F. Ji, and F. H. Xu (1995). Genetic analysis of direct and maternal effectsof seed traits in upland cotton. (Chinese). Acta Agronomica Sinica. 21(6): 659-664. [Full text/PDF]

42. Shi C. H., J. M. Xue, Y. G. Yu, X. E. Yang, and J. Zhu (1996). Analysis of genetic effects for nutrient quality traits in indica rice. Theor. Appl. Genet., 92(8):1099-1102 [Full text/PDF]

43. Yan J. Q., Q. Z. Xue, and J. Zhu (1996). Genetic studies of anther culture ability in rice (Oryza sativa L.). Plant Cell, Tissue and Organ Cultural, 45(3): 253-258. [Full text/PDF]

44. Shi C. H. and J. Zhu (1996). Genetic analysis of endosperm, cytoplasmic and maternal effects for exterior quality traits in indica rice. Journal of Biomathematics, 11(1): 73-81. [Full text/PDF]

45. Shi C. H and J. Zhu (1996). Study on endomsperm, cytoplasmic and maternal plant genetic effects for nutritive quality traits in indica rice. Rice Genetics Newsletter, 12: 224-225

46. Wang G. J., J. Zhu, R. C. Zang, F. H. Xu, and D. F. Ji (1996). Analysis of covariance components between seed and agronomy traits in upland cotton. Acta Gossypii Sinica 8(6): 395-300 [Full text/PDF].

47. Wang G. J., J. Zhu, R. C. Zang, F. H. Xu, and D. F. Ji (1996). Analysis of genetic correlation among seed nutrient quality traits and seed physical traits in upland cotton. Journal of Zhejiang Agricultural University, 22:585-590. [Full text/PDF]

48. Xu S. Y., X. F. Yan, Z. R. Xu and J. Zhu (1996). Genetic analysis of nonessential amino acid contents in two-rowed barley. Journal of Zhejiang Agricultural University, 22:567-573. [Full text/PDF]

49. Shi C. H., Y. G. Yu, J. M. Xi, X. E. Yang, and J. Zhu (1996) Genetic correlation analysis of seed, cytoplasm and maternal plant for nutrient quality in indica rice. Chinese J. Rice Science, 10(3): 143-146.

50. Shen S. Q. and J. Zhu (1997). Analysis of genotype ´ environment effects for some agronomic traits in F₁ inter-subspecies hybrids of rice (Oryza sativa L.). Journal of Zhejiang Agricultural University, 23(2):217-222 [Full text/PDF]

51. Shi C. H., J. Zhu, R. C. Zeng and G. L. Chen (1997). Genetic and heterosis analysis for cooking quality traits of indica rice in different environments. Theor. Appl. Genet., 95:294-300 [Full text/PDF]

52. Atchley W. R. and J. Zhu (1997). Developmental quantitative genetics, conditional epigenetic variability and growth in mice. Genetics, 147:765-776. [Full text/PDF]

53. Chen J. G., J. Zhu, and Q. M. Pan (1997). Analysis of genetic covariance between quality traits and agronomic characters in indica-japonic crosses of rice (Oryza sativa L.). Journal of Hubei University, 19(3):278-282

54. Shi, C. H., C. X. He and J. Zhu (1998). Analysis of genetic effects and genotype ´ environment interactions for milling quality traits of rice. Acta Genetica Sinica 25(1): 46-53. [Full text/PDF]

55. Yan X. F., S. Y. Xu . Y. H. Xu, and J. Zhu (1998). Genetic investigation of contributions of embryo and endosperm genes to malt kolbach index, alpha-amylase activity and wort nitrogen content in barley. Theor. Appl. Genet., 96(5):709-715. [Full text/PDF]

56. Benmoussa, M., J. Zhu, J. Q. Yan, C. X. He, and P. Wu (1998). QTL mapping for yield components across environments in rice (Oryza sativa L.). In Advanced Topics in Biomathematics: Procceedings of International Conference on Mathematical Biology. pp:15-20. Edited by L. S. Chen, S. G. Ruan, and J. Zhu, World Scientific Publishing Co., Singapore. [Full text/PDF]

57. Yan, J. Q., J. Zhu, C. X. He, M. Benmoussa, and P. Wu (1998). QTL analysis for developmental behavior of plant height in rice (Oryza sativa L.). In Advanced Topics in Advanced Topics in Biomathematics: Procceedings of International Conference on Mathematical Biology. pp:285-290. Edited by L. S. Chen, S. G. Ruan, and J. Zhu, World Scientific Publishing Co., Singapore. [Full text/PDF]

58. Wu, J. X., H. M. Xu, and J. Zhu (1998). An approach to eliminating systematic errors in genetic analysis. In Advanced Topics in Biomathematics: Procceedings of International Conference on Mathematical Biology. PP:265-270. Edited by L. S. Chen, S. G. Ruan, and J. Zhu, World Scientific Publishing Co., Singapore. [Full text/PDF]

59. Lou, X. Y., J. Zhu, Q. D. Zhang, R. C. Zang, and Y. Cheng. (1998). A genetic study on the effects of Opaque-2 and polygenes on kernel quality traits in maize. In Advanced Topics in Biomathematics: Procceedings of International Conference on Mathematical Biology. pp:143-148. Edited by L. S. Chen, S. G. Ruan, and J. Zhu, World Scientific Publishing Co., Singapore. [Full text/PDF]

60. McCarty, Jr., J. C., J. N. Jenkins, and J. Zhu. (1998). Introgression of day-neutral genes in primitive cotton accessions: I. genetic variances and correlations. Crop Sci. 38: 1425-1428 [Full text/PDF]

61. McCarty, Jr., J. C., J. N. Jenkins, and J. Zhu. (1998). Introgression of day-neutral genes in primitive cotton accessions: II. predicted genetic effects. Crop Sci. 38: 1428-1431 [Full text /PDF]

62. Yan, J. Q., J. Zhu, C. X. He, M. Benmoussa, and P. Wu. (1998). Molecular dissection of developmental behavior of plant height in rice (Oryza sativa L.). Genetics, 150：1257-1265. [Full text/PDF]

63. Yan, J. Q., J. Zhu, C. X. He, M. Benmoussa, and P. Wu. (1998). Quantitative trait loci analysis for developmental behavior of tiller number in rice (Oryza sativa L.). Theor. Appl. Genet. 97:267-274. [Full text/PDF]

64. Shi, C. H. and J. Zhu. (1998). Analysis of seed and maternal genetic effects for nutritive quality traits of grain in indica rice. Seed Science and Technique, 26(2):481-488.   [Full text/PDF]

65. Shappley, Z. W., J. N. Jenkins, J. Zhu, and J. C. McCarty Jr., 1998. Quantitative trait loci associated with agronomic and fiber traits of upland cotton. J. Cotton Science, 2(4):153-163.[Full text/PDF]

66. Chen, J. G., J. Zhu, and R. C. Zhang. (1998). Genetic analysis of fat content in indica-japonic intersubspecific hybrid rice (Oryza sativa L.). J. of Tropical and Subtropical Botany, 6(4):347-351. [Full text/PDF]

67. Yan X. F., S. Y. Xu, J. Zhu, and Y. H. Xu. (1998). A genetic model and analytic methods for malt quality traits. Journal of Biomathematics, 13(4): 531-536. [Full text/PDF]

68. Shi, C. H., J. Zhu, Y. G. Yu， X. O. Yang, and J. M. Xue. (1998). Inference of genotype ´ environment interaction effects on heterosis of nutrient quality traits in Indica hybrid rice. Journal of Biomathematics, 13(6): 1035-1041. [Full text/PDF]

69. Xu, Z. C. and J. Zhu. (1998). Genetic models for quantitative seed traits in a three-way mating design. Journal of Biomathematics, 13(6): 1015-1021. [Full text/PDF]

70. Chen, Q., J. Zhu, and J. X. Wu. (1999). Developmental analysis of boll number and seed cotton yield per plant at different fruiting stages in upland cotton (Gossypium hirsutum L.). Journal of Zhejiang Agricultural University, 25(2):155-160. [Full text/PDF]

71. Xu, S. Y., X. F. Yan, J. Zhu, Y. H. Xu and X. Y. Xu. (1999). Analysis of embryo and endosperm genetic effects on diastatic power and associated malting quality traits of malting barley. Acata Gronomica Sinica, 25(1): 25-31. [Full text/PDF]

72. Xu Z.C., J. Zhu. (1999). A new approach for predicting heterosis based on an additive, dominance and additive ´ additive model with environment interaction. Heredity, 82(5):510-517. [Full text /PDF]

73. Yan, J. Q., J. Zhu, C. X. He, M. Benmoussa and P. Wu. (1999). Molecular marker-assisted dissection of genotype ´ environment interaction for plant type traits in rice (Oryza sativa L.). Crop Sci. 39(2): 538-544. [Full text/PDF]

74. Yan, X. F., J. Zhu, S. Y. Xu and Y. H. Xu. (1999). Genetic effects of embryo and endosperm for four malting quality traits of barley. Euphytica 106: 27-34. [Full text/PDF]

75. Shi, C. H., J. Zhu, X. O. Yang, Y. G. Yu and J. G. Wu. (1999). Genetic analysis for protein content in indica rice. Euphytica 107: 135-140 [Full text/PDF]

76. Shi, C. H., J. Zhu, J. G. Wu, X. E. Yang, Y. G. Yu and L. J. Fan. (1999). Analysis of embryo, endosperm, cytoplasmic and maternal effects for heterosis of protein and lysine content in indica hybrid rice. Plant Breeding 118(6) 574-576 [Full Text /PDF]

77. Wang, Daolong, J. Zhu, Z. K. Li, and A. H. Paterson. (1999). Mapping QTLs with epistatic effects and QTL ´ environment interactions by mixed linear model approaches. Theor. Appl. Genet.. 99:1255-1264. [Full text/PDF]

78. Shi, C. H., J. Zhu, J. and Y G Yu, (1999). Genotype × environment interaction effects and genotypic correlations for nutrient quality traits of Indica rice (Oryza sativa L.). Indian Journal of Agricultural Science, 70(2):85-89. [Full text/PDF]

79. Shi, C. H., J. Zhu, J. G. Wu, X. E. Yang, Y. G. Yu and L. J. Fan. (2000). Analysis of embryo, endosperm, cytoplasmic and maternal effects for heterosis of protein and lysine content in indica hybrid rice. Plant Breeding. 118(6):574-576. [Full text/PDF]

80. Wang D. L., J. Zhu, and Z. K. Li, (1999). Simulation studies on identification of interaction markers representing QTL epistasis by stepwise regression. Journal of Zhejiang University (Agric. & Life Sci.), 25(5):453-461 [Full text/PDF]

81. Shi，C. H. and J. Zhu，(1999). Analysis of genetic covariances between seed nutrient traits and maternal plant traits in indica rice. Field Crop Research 68: 191-198. [Full text/PDF]

82. Hu, J., J. Zhu, and H. M. Xu. (2000). Methods of constructing core collections by stepwise cluster with three sampling strategies based on genotypic values of crops. Theor. Appl. Genet., 101:264-268. [Full text/PDF]

83. He, C. X., J. Zhu, J. Q. Yan, M. Benmoussa, and P. Wu. (2000). QTL mapping for developmental behavior of panicle dry weight in rice. Acta Agronomica Sinica. 33(1) 24-32 [Full text/PDF]

84. Zhou, H. G. and J. Zhu. (2000). The study of cladistic methods for allele frequency data. J. of Guangzi Agri. & Bio. Sci. 18(Sup): 158-162 [Full text/PDF]

85. Zhou, H. G. and J. Zhu. (2000). Estimation of population parameters in genetic polymorphism equilibrium by overdominance model. Journal of Biomathematics, 15(1): 21-28. [Full text/PDF]

86. Hu J., H. M. Xu and J. Zhu. (2000). Constructing core collection of crop germplasm by multiple clusters based on genotypic values. Journal of Biomathematics, 15(1): 103-109. [Full text/PDF]

87. Xu Z. C. and J. Zhu. (2000). An ADAA model and its analysis method for agronomic traits based on the double-cross matting design. Acta Genetica Sinica 27(3): 257-269 [Full text/PDF]

88. Xu, H. M., J. Hu and J. Zhu. (2000). An efficient method of sampling core collection from crop germplasm. Acta Agronomica Sinica. 26(2) 157-162. [Full text/PDF]

89. Shi, C. H., J. Zhu, J. G. Wu and F. L Fan, (2000). Genetic and genotype × environment interaction effects from embryo, endosperm and maternal plant for rice grain shape traits of Indica rice. Field Crop Research 68:191-198. [Full text /PDF]

90. Ye, Z-H. and J. Zhu. (2000). Genetic analysis on flowering and boll setting in Upland cotton (Gossypium hirsutum L.). III. The genetic behavior at different developing stages. Acta Genetica Sinica. 27(9): 800-809. [Full text/PDF]

91. Chen Q. J. Zhu and J. Xiang. (2000). Genetic study on seed cotton yield at different boll-setting stages and fruiting sites in Upland cotton. Scientia Agrocultura Sinica. 33(4): 97-99. [Full text/PDF]

92. He, C. X., J. Zhu, J. Q. Yan, M. Benmoussa, P. Wu, (2000). QTL mapping for developmental behavior of leaf sheath height in rice. Chinese J. Rice Sci. 14(4):193-198.[Full text/PDF]

93. Ye, Z-H. and J. Zhu. (2001). Genetic analysis on flowering and boll setting in Upland cotton (Gossypium hirsutum L.). II. The genetic behavior of different fruiting sites. Acta Agronomica Sinica. 27(2) 243-252. [Full text/PDF]

94. Zuo, Q-F, J. Zhu, Y-B Liu, X-Y Pan and J-Z Zhang, (2001). Methods of genetic analysis for triploid endosperm quality traits for unequal experimental design. Journal of Biomathematics, 16(1): 16-22. [Full text/PDF]

95. Ye, Z-H., J. Zhu, (2001). Genetic analysis on flowering and boll setting in Upland cotton (Gossypium hirsutum L.): Flowering behavior and its influencing factors. Journal of Zhejiang University (Agric. & Life Sci.), 27(1): 62-68. [Full text/PDF]

96. Cao, G. Q. J. Zhu, Y. M. Gao, P. Wu, (2001). Study on epistatic effects and QTL ´ environment intraction effects of QTLs for panical length in rice (Oryza sativa L.). Journal of Zhejiang University (Agric. & Life Sci.), 27(1): 55-61. [Full text/PDF]

97. Ye, Z-H., J. Zhu, (2001). Advance in developmental genetic models and analysis methods for quantitative traits. Hereditas (Beijing), 23(1):65-68. [Full Text/PDF]

98. Ye, Z-H., Z. Z. Lu, and J. Zhu, (2001). Genetic analysis for developmental behavior of some seed physical traits in Upland cotton (Gossypium hirsutum L.). Cotton Sci. 13(6):321-322. [Full text/PDF]

99. Cao, G. Q, J. Zhu , C. X. He, Y. M. Gao, J. Q. Yan, and P. Wu. (2001). Impacts of Epistasis and QTL ´ Environment Interaction for Developmental Behavior of Plant Height in Rice (Oryza sativa L.). Theor. Appl. Genet., 103:153-160. [Full text/PDF]

100. Hu, J., J. Zhu, and H. M. Xu. (2001).Study on property of sample size and different traits for core collections based on genotypic values of cotton. Journal of Zhejiang University (Science): 2(1): 89-93 [Full text/PDF]

101. Hu, J., H. M. Xu, and J. Zhu. (2001). A method of constructing core collection resering special germplasm materials. Journal of Biomathematics, 16(3): 348-352. [Full text/PDF]

102. Wang, H. G., J. Zhu, and S. B. Liu. (2001). Identification of tritelytrigia translocation line with disease resistance by cytology and RAPD analysis. Acta Agronomica Sinica. 27(6): 886-890.

103. Wu, R. L., C. X. Ma, J. Zhu, and G. Casella. (2002). Mapping epigenetic quantitative trait loci (QTL) altering a developmental trajectory. Genome 45:28-33. [Full Text/PDF]

104. Lou, X. Y., J. Zhu. (2002). Analysis of genetic effects of major genes and polygenes on quantitative traits: I. Genetic model for diploid plants and animals. Theor. Appl. Genet., 104 (2-3):414-421

105. Lou, X. Y., J. Zhu. (2002). Analysis of genetic effects of major genes and polygenes on quantitative traits: II. Genetic model for seed traits of crops. Theor. Appl. Genet., 105: 964-971 [Full Text /PDF]

106. Shi, C. H., J.G. Wu, X. B. Lou, J. Zhu and P. Wu. (2002). Genetic analysis of transparency and chalkiness area at different filling stages of rice (Oryza sativa L.). Field Crop Research, 76:1-9 [Full Text /PDF]

107. Shi, C. H., J. G. Wu, L. J. Fan, J. Zhu, and P. Wu. (2002). Developmental genetic analysis for transparency of rice (Oriza sativa L.) at different environments. Acta Genetica Sinica 29(1):56-61. [Full Text /PDF]

108. Achouch A. and J. Zhu. (2002). Simulation studies for comparing genetics models with additive-dominance-maternal effects and GE interaction effects. Journal of Biomathematics, 17(2):208-214. [Full Text /PDF]

109. Chen, J. G. and J. Zhu.(2002). Genetics effects for cooking quality characters in Indica-Japonica crosses of rice. Journal of Biomathematics, 17(2):226-234. [Full Text /PDF]

110. Cao, L. Y., J. Zhu, L. f. Ren, S. T. Zhao and Q. C. Yang. (2002). Mapping QTLs and epistasis for seedling vigor in rice (Oryza sativa L.). Acta Agronomica Sinica. 28(6): 809-815. [Full Text /PDF]

111. Cao, L. Y., J. Zhu, Q. C. Yan, L. B. He, X. H. Wei and S. H. Chen. (2002). Mapping QTLs with epistasis for mesocotyl length in a DH population from indica-japonica cross of rice (Oryza sativa). Chinese J. Rice Sci. 16(3):221-224. [Full Text /PDF]

112. Cao, L. Y., J. Zhu, S. Y. Zhao, L. B and Q. C. Yan. (2002). Mapping QTLs for heat tolerance in a DH population from indica-japonica cross of rice (Oryza sativa). J. Agricultural Biotechnology, 10(3): 210-214. [Full Text /PDF]

113. Ye, Z. H., Z. Z. Lu and J. Zhu. (2003). Genetic analysis for developmental behavior of some seed quality traits in upland cotton (Gossypum hirsutum L.). Euphytica, 129(2):183-191. [Full Text /PDF]

114. Liu, P. Y., J. Zhu, X. Y. Lou and Y. Lu. (2003). A method for marker-assisted selection based on QTLs with epistatic effects. Genetica, 119: 75-86. [Full Text /PDF]

115. Wu, J., J. N. Jenkins, J. Zhu, J. C. McCarty Jr., and C. E. Watson. (2003). Comparisons of quantitative trait locus mapping properties between two methods of recombinant inbred line development. Euphytica, 132: 159-166. [Full Text /PDF]

116. Wu, J., J. N. Jenkins, J. Zhu, J. C. McCarty Jr., and C. E. Watson. (2003). Monte Carlo simulations on marker grouping and ordering. Theoretical and Applied Genetics, 107: 568-573. [Full Text /PDF]

117. Liu, P., J. Zhu, and L. Yan, (2004). Marker-assisted selection in segregating generations of self-fertilizing crops. Theoretical and Applied Genetics, 109(2): 370-376. [Full Text /PDF]

118. Zhao, W., J. Zhu, G. M. Maria and R. Wu. (2004). A unified statistical model for functional mapping of environment-dependent genetic expression and genotype ´ environment interactions for ontogenetic development. Genetics, 168 (3): 1751-1762. [Full Text /PDF]

119. Xu, Z..C., D. B. Lu and J. Zhu. (2003). Monte Carlo simulation for analyzing ADAA models and seed models based on the triallel mating design. Journal of Henan Agricultural University. 37(4): 311-316. [Full Text /PDF]

120. Yuan, A. P., L. Y. Ca, J. Y. Zhuang, R. Z. Li, K. L. Zeng, J. Zhu and s. H. Cheng. (2003). Analysis of additive and AE interaction effects of QTL controlling plant height, heading date and panicle number in rice (Oryza sativa L.). Acta Genetica Sinica 30(10): 899-906. [Full Text /PDF]

121. Gao, Y. M., J. Zhu, Y. S. Song, C. X. He, C. H. Shi and Y. Z. Xing. (2004). Analysis of digenic epistatic effects and QE interaction effects QTL controlling grain weight in rice. Journal of Zhejiang University (SCIENCE). 2004, 5(4)：371-377. [Full Text /PDF]

122. Pan, H. Y., J. Zhu and D. F. Han. (2004). Genetic algorithms applied to multi-class clustering for gene expression data. Genomics, Proteomics & Bioinformatics (GPB)，1(4): 279-287. [Full Text /PDF]

123. Zhao, W., J. Zhu, G. M. Maria and R. Wu. (2004). A unified statistical model for functional mapping of environment-dependent genetic expression and genotype ´ environment interactions for ontogenetic development. Genetics, 168 (3): 1751-1762. [Full Text /PDF]

124. Wu, J., J. N. Jenkins, J. C. McCarty Jr., and J. Zhu. (2004). Genetic association of yield with its component traits in a recombinant inbred line population of cotton. Euphytica, 140: 171-C179. [Full Text /PDF]

125. Lu, Y. J. Zhu, and P. Liu. (2005). A two-step strategy for detecting differential gene expression of cDNA microarray data. Current Genetics. 47: 121-131. [Full Text /PDF]

126. Yang, J., and J. Zhu. (2005). Methods for predicting superior genotypes under multiple environments based on QTL effects. Theoretical and Applied Genetics, 110: 1268-1274. [Full Text /PDF]

128. Wang X. S., X. Q. Zhao, J. Zhu, and W. R Wu, (2005). Genome-wide investigation of intron length polymorphisms and their potential as molecular markers in rice (Oryza sativa L.). DNA Research, 12, 417-427. [Full Text /PDF]

129. Wang X. S., W. R. Wu, G. L. Jin, and J. Zhu, (2005). Genome-wide identification of R genes and exploitation of candidate RGA markers in rice. Chinese Science Bulletin, 50 (11): 1120-1125. [Full Text /PDF]

130. Lou X. Y., J. Zhu, Q. D. Zhang, R. C. Zang, Y. B. Chen, Z. L. Yu, and Y. J. Zhao, (2005). Genetic control of the opaque-2 gene and background polygenes over some kernel traits in maize (Zea mays L.). Genetica 124 (2): 291-300. [Full Text /PDF]

131. Yang, Y. X., P. K. Pathak, and J. Zhu. (2005). Age-specific mapping of QTLs associated with cold tolerance for seedling weight in rice (Oryza sativa L.). J. Zhejiang Univ. (Agric. & Life Sci.), 31(2):131-138. [Full Text /PDF]

132. Xu, Z. C.,  and J. Zhu. (2005). Approaches for predicting heterosis of wuantitative seed traits based on multiple-cross mating designs. J. Zhejiang Univ. (Agric. & Life Sci.), 31(2):139-144. [Full Text /PDF]

133. Wen, Y. X., J. Zhu. (2005). Multivariable conditional analysis for complex trait and its components. Acta Genetica Sinica, 32(3): 289-296. [Full Text /PDF]

134. Wang, X. S., J. Zhu, L. Mansueto, and R. Bruskiewich. (2005). Identification of candidate genes for drought stress tolerance in rice by the integration of a genetic (QTL) map with the rice genome physical map. J. Zhejiang University (SCIENCE). 6B(5): 382-388. [Full Text /PDF]

135. Pan, H. Y., J. Zhu, and D. F. Han. (2005). Clustering gene expression data based on predicted differential effects of GV interaction. Genomics, Proteomics & Bioinformatics (GPB)，3(1): 36-41. [Full Text /PDF]

136. Wu, J., J. Zhu, J. N. Jenkins, and J. C. McCarty Jr., (2005). A new method for constructing linkage maps for organisms with achiasmatic gametogenesis. Acta Genetica Sinica,  32(6):608-615. [Full Text /PDF]

137. Jin, G. L.，X. S. Wang，J. Zhu. (2005). Bioinformatic analysis of the 14-3-3 gene family in rice. Acta Genetica Sinica, 32(7):726-732. [Full Text /PDF]

138. Chen, Z. Z., X. S. Wang, and J. Zhu. (2005). Analysis of SSR polymorphism by genome-scale comparing between varieties in rice. Chinese J Rice Sci. 19(4): 303-307. [Full Text /PDF]

139. Xiao, B. G., J. Zhu, X. P. Lu, Y. F. Bai, and Y. P. Li. (2005). Genetic contritution of agronomic traits to yield in flue-cured tobacco (Nicotiana tabacum L.). Acta Genetica Sinica, 32(10):1089-1093. [Full Text /PDF]

140. Xiao, B. G., J. Zhu, X. P. Lu, Y. F. Bai, and Y. P. Li. (2005). Genetic analysis for chemical constituents in flue-cured Tobacco (Nicotiana tabacum L.). Acta Agronomica Sinica, 31(12): 1557-1561. [Full Text /PDF]

141. Xu H. M., Y. J. Mei, J. Hu, J. Zhu, and P. Gong, (2006). Sampling a core collection of island cotton (Gossypium barbadense L.) based on the genotypic values of fiber traits. Genetic Resources and Crop Evolution, 53 (3): 515-521. [Full Text /PDF]

142. Lou, X. Y., J. Z. Ma, M. C. K. Yang, J. Zhu, P. Y. Liu, H. W. Deng, R. C. Elston, and M. D. Li, (2006). Improvement of mapping accuracy by unifying linkage and association analysis. Genetics, 172: 647-661. [Full Text /PDF]

143. Pan G., X. Y. Zhang, K. D. Liu, J. W. Zhang, X. Z. Wu, J. Zhu, J. M. Tu, (2006). Map-based cloning of a novel rice cytochrome P450 gene CYP81A6 that confers resistance to two different classes of herbicides. Plant Mol Biol, 61:933-943. [Full Text /PDF]

144. Cui Y. H., J. Zhu, and R. L. Wu, (2006). Functional mapping for genetic control of programmed cell death. Physiol Genomics, 25: 458-469. [Full Text /PDF]

145. Cui Y. H., D. Y. Kim, and J. Zhu, (2006). On the generalized Poisson regression mixture model for mapping quantitative trait loci with count data. Genetics, 174 (4): 2159-2172. [Full Text /PDF]

146. Liu, P. Y., J. Zhu, and Y. Lu. (2006). Impacts of QTL x environment interactions on genetic response to marker-assisted selection. Acta Genetica Sinica, 33(1): 63-71.. [Full text/PDF]

147. Zhou Y. Y., J. Yang, and J. Zhu. (2006). A robust statistical procedure to discover expression biomarkers using microarray genomic expression data. J Zhejiang Univ SCIENCE B, 7(8):603-607. [Full Text /PDF]

148. Xiao, B. G., J. Zhu, X. P. Lu, Y. F. Bai, amd Y. P. Li. (2006). Genetic and correlation analysis for agronomic traits in flue-cured Tobacco (Nicotiana tabacum L.). Hereditas (Beijing), 28 (3): 317-323. [Full Text /PDF]

149. Wei, Y. J., J. Zhu, L. P. Zhang,W. F. Guo, S. L. Hu. (2006). Analysis on contribution of yield components to main fiber traits in Upland cotton (Gossypum hirsutum L.). Scientia Agricultura Sinica, 39(4):848-854. [Full Text /PDF]

150. Zhou Y. Y., J. Yang, J. Zhu. 2006, A robust statistical procedure to discover expression biomarkers using microarray genomic expression data. J Zhejiang Univ SCIENCE B, 7(8):603-607. [Full Text /PDF]

151. Liu, G. F., H. M. Xu, J. Ynag, and J. Zhu. (2006). Genetic analysis on tiller number and plant height per plant in rice (Oryza sativa L. ). Journal of Zhejiang University (Agric & LifeSci), 32 (5): 527-534. [Full Text /PDF]

152. Xiao, B. G., Z. Li. Xu, X. J. Chen, A. R. Shen, Y. P. Li, and J. Zhu. (2006). Genetic linkage map constructed by using a DH population for the flue-cured tobacco. Chinese Tobacco Sciences, 12(4):35-40. [Full Text /PDF]

153. Xiao, B.G.，J. Zhu, X.P. Lu, Y.F. Bai, Y.P. Li. (2007). Analysis on genetic contribution of agronomic traits to total sugar in flue-cured tobacco (Nicotiana tabacum L.). Field Crops Research, 102(2): 98-103. [Full Text /PDF]

154. Wang X. S., H. B. Zhu, G. L. Jin, H. L. Liu, W. R. Wu, and J. Zhu, (2007). Genome-scale identification and analysis of LEA genes in rice (Oryza sativa L.). Plant Science, 172 (2): 414-420. [Full Text /PDF]

155. Lou, X. Y., G. B. Chen, L. Yan, J. Z. Ma, J. Zhu, R. C. Elston, and M. D. L, (2007). A generalized combinatorial approach for detecting gene-by-gene and gene-by-environment interactions with application to nicotine dependence. The American Journal of Human Genetics, 80:1125-1137. [Full Text /PDF]

156. Yang, J., J. Zhu, and R. W. Williams, (2007). Mapping the genetic architecture of complex traits in experimental populations. Bioinformatics, 23: 1527-1536. [Full Text /PDF]

157. Hu, C. C., X. Z. Ye, Y. Zhang, R. D. Yu, J. Yang, and J. Zhu. (2007). 3D graphical visualization of the genetic architectures underlying complex traits in multiple environments. J Zhejiang Univ SCIENCE A, 8(4) 563-567. [Full Text /PDF]

158. Han, L. D., J. Yang, and J. Zhu. (2007). Analysis of genetic effects of nuclear-cytoplasmic interac-tion on quantitative traits: genetic model for diploid plants. Journal of Genetics and Genomics, 34 (6): 562-568. [Full Text /PDF]

159. Liu, G. F., J. Yang, H. M. Xu, and J. Zhu. (2007). Influence of epistasis and QTL x environment interaction on heading date of rice (Oryza sativa L.). Journal of Genetics and Genomics，34(7): 608-615. [Full Text /PDF]

160. Gao，M., and J. Zhu, (2007). Mapping QTLs with digenic epistasis under multiple environments and predicting heterosis based on QTL effects. Theoretical and Applied Genetics, 115 (3): 325-333. [Full Text /PDF]

161. Wu, J. S., B. Zhang, Cui YH, et al., (2007). Genetic mapping of developmental instability: Design, model and algorithm. Genetics, 176 (2): 1187-1196. [Full Text /PDF]

162. Wu, J. S., Y. R. Zeng, J. Q. Huang, W. Hou, J. Zhu, and R. L. Wu, (2007). Functional mapping of reaction norms to multiple environmental signals. Genetical Research, 89 (1): 27-38. [Full Text /PDF]

163. Cui, Y. H., R. L. Wu, G. Casella, and J. Zhu, (2008). Nonparametric functional mapping of quantitative trait loci underlying programmed cell death. Statistical Applications in Genetics and Molecular Biology, 7(1):1-30. [Full Text /PDF]

164. Liu, G. F., J. Yang, H. M. Xu, Y. Hayat, and J. Zhu, (2008). Genetic analysis of grain yield conditioned on its component traits in rice (Oryza sativa L.). Australian Journal of Agricultural Research, 59: 189-195. [Full Text /PDF]

165. Yang, J., C. C. Hu, H. Hu, R. D. Yu, Z. Xia, X. Z. Ye, and J. Zhu, (2008). QTLNetwork: mapping and visualizing genetic architecture of complex traits in experimental populations. Bioinformatics, 24(5):721-723. [Full Text /PDF]

166. Yang, J., W. R. Wu, and J. Zhu, (2008). Mapping interspecific genetic architecture in a host-parasite interaction system. Genetics, 178: 1737-1743. [Full Text /PDF]

167. E76. Han, L, D., H. M. Xu, J. Zhu, and X, Y, Lou, (2008). Analysis of genetic effects of nuclear-cytoplasmic interaction on quantitative traits: Genetic models for seed traits of plants. Theoretical and Applied Genetics, 116(6): 769-776. [Full Text /PDF]

168. Wang, X., M. Zhang, J. Zhu, S. Geng. (2008). Spectral prediction of Phytophthora infestans infection on tomatoes using artificial neural network (ANN). International Journal of Remote Sensing, 29(6):1693-1706. [Full Text /PDF]

169. Han, L. D., J. Zhu. (2008). Using matrix of thresholding partial correlation coefficients to infer regulatory network. Biosystems, 91(1): 158-165. [Full Text /PDF]

170. Cui, Y. H., R. L. Wu, G. Casella, and J. Zhu. (2008). Nonparametric functional mapping of quantitative trait loci underlying programmed cell death. Statistical Applications in Genetics and Molecular Biology, 7(1): Article 4. [Full Text /PDF]

171. Lou, X. Y., G. B. Chen, L. Yan, J. Z. Ma, J. Zhu, R. C. Elston, and M. D. Li, (2008). A combinatorial approach to detecting gene-gene and gene-environment interactions in family studies. The American Journal of Human Genetics, 83: 457-467. [Full Text /PDF]

172. Chen, G. B., T. J. Payne, X. Y. Lou, J. Z. Ma, J Zhu, and M. D. Li. (2008). Association of amyloid precursor protein-binding protein, family B, member 1 with nicotine dependence in African and European American smokers. Hum Genet., 124:393-398. [Full Text /PDF]

173. Hayat, Y., J. Yang, H. M. Xu, and J. Zhu. (2008). Influence of outliers on QTL mapping for complex traits. Journal of Zhejiang University (SCIENCE) B, 9(12): 931-937. [Full Text /PDF]

174. Wu, J. X., O. A. Gutierrez, J. N. Jenkins, J. C. McCarty, and J. Zhu. (2009). Quantitative analysis and QTL mapping for agronomic and fiber traits in an RI population of upland cotton. Euphytica, 165(2): 231-245. [Full Text /PDF]

175. Yang, J., Y. Y. Zou, and J. Zhu. (2009). Identifying differentially expressed genes in human acute leukemia and mouse brain microarray datasets utilizing QTModel. Functional & Integrative Genomics, 9(1): 59-66. [Full Text /PDF]

176. Zhang, W. Y., H. M. Xu, and J. Zhu. (2009). Index selection on seed traits under direct, cytoplasmic and maternal effects in multiple environments. Journal of Genetics and Genomics, 36(1): 41-4. [Full Text /PDF]

177. Xia, Z., Z. H. Zhu, J. Zhu, and R. H. Zhou. (2009). Recognition mechanism of siRNA by Viral p19 suppressor of RNA silencing: A molecular dynamics study. Biophysical Journal, 96:1761-1769. [Full Text /PDF]

178. Weir, B. S, W. G. Hill, J. Zhu, and Z. B. Zeng. (2009). The third international conference of quantitative genetics. Genetica, 136(2): 211-212. [Full Text /PDF]

179. Gong, Y. G., C. N. Wue, Q. H. Xing, X. Z. Zhao, J. Zhu, and L. He. (2009). A two-method meta-analysis of Neuregulin 1(NRG1) association and heterogeneity in schizophrenia. Schizophrenia Research, 111(1-3): 109-114. [Full Text /PDF]

180. Xia, Z., G. L. Jin, J. Zhu, and R. H. Zhou. (2009). Using a mutual information based site transition network to map the genetic evolution of influenza A/H3N2 virus. Bioinformatics, 25(18): 2309-2317. [Full Text /PDF]

181. Shen, Y. F. and J. Zhu. (2009). Power analysis of principal components regression in genetic association studies. Journal of Zhejiang University-Science B, 10(10): 721-730. [Full Text /PDF]

182. Zhao, M., H. G. Yu, and J. Zhu. (2009). Effects of a population floor on the persistence of chaos in a mutual interference host-parasitoid model. Chaos Solitons & Fractals, 42: 1245-1250. [Full Text /PDF]

183. Zheng, W. J., J. Yang, and J. Zhu. (2010). QTLNetworkR: an interactive R package for QTL visualization. Journal of Zhejiang University-Science B, 11(7): 512-515. [Full Text /PDF]

184. Liu, H. L., J. Zhu. (2010).Analysis of the 3' ends of tRNA as the cause of insertion sites of foreign DNA in Prochlorococcus. Journal of Zhejiang University-Science B,11(9):708-718. [Full Text /PDF]

185. Zhao, M., L. M. Zhang, and J. Zhu. (2010). Dynamics of a host-parasitoid model with prolonged diapause for parasitoid. Communications in Nonlinear Science and Numerical Simulation, 16(1): 455-462. [Full Text /PDF]

186. Shen, Y. F., Z. Y. Lin, and J. Zhu. (2011). Shrinkage-based regularization tests for high-dimensional data with application to gene set analysis. Computational Statistics & Data Analysis, 55(7): 2221-2233. [Full Text /PDF]

187. Chen G. P., Y. Xu, H. M. Xu, M. D. Li, J. Zhu, and X. Y. Lou. (2011). Practical and Theoretical Considerations in Study Design for Detecting Gene-Gene Interactions Using MDR and GMDR Approaches. PLoS ONE, 6(2): e16981. [Full Text /PDF]

188. Liu Y, H. Xu, S. Chen, X. Chen, Z. Zhang, Z. H. Zhu, X. Y. Qin, L. Hu, J. Zhu, G.P. Zhao, and X. Y. Kong. (2011). Genome-wide interaction-based association analysis identified multiple new susceptibility Loci for common diseases. PLoS Genet, 2011(7): e1001338. [Full Text /PDF]

Professional Affiliations & Honor Societies

The Biometrics Society (ENAR)

The Genetics Society of China

Phi Kappa Phi (Scholastic)

New York Academy of Science

American Association for the Advancement of Science

Crop Science Society of American

Software Developed for Quantitative Genetics and Bioinformatics：

• Software for Classical Quantitative Genetics：
  QGA(English Version) QGA(Chinese Version)
• Software for QTL Mapping:
  QTLMaper1.6 QTLMaper2.0
  QTL Network
• Software for Bioinformatics:

ClusterProject

An R Package for Tissue Specific Genes Analysis

Books：

• 《Principles of Linear Model Analysis》： PDF
• 《Analysis Methods for Genetic Models》： PDF