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Detail information of AT1G01140_circ_g.3


circRNA ID
AT1G01140_circ_g.3
Alias
ath_circ_000015
Organism
Arabidpsis thaliana
Position
chr1: 65739-66160  JBrowse»
Reference genome
TAIR10.38
Type  
e-circRNA
Identification method
PcircRNA_finder
Parent gene
AT1G01140
Parent gene annotation
CBL-interacting protein kinase 9
Parent gene strand
-
Alternative splicing
AT1G01140_circ_g.2
Splice junction sequence  
TTCATATTCTTTGCCTTTTTAAGTGCTGAAAGTTAGTACATAATACCTCAGGGGCAACGTAGTT
TGGCGTTCCACAAGCTGTATGAAGCAAACCATCTTCacgtttgtataatgtcatgagattcggc
tcatcaaaaggcaagtaaccagccataagcacaaagagaatgacaccacaagaccagacatctg
ctgctgca
Support reads
1
Tissues
whole_plant
Exon boundary  
Yes-Yes
Splicing signals  
CT-AC
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
NA
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
ACGTTTGTATAATGTCATGAGATTCGGCTCATCAAAAGGCAAGTAACCAGCCATAAGCACAAAG
AGAATGACACCACAAGACCAGACATCTGCTGCTGCACCGTCATAGCCTTTGTCCGACAAAACCT
GCCAGCAAATCCAACACAATGCAGTAGACAACATTAAAGGCATATCTCTTATATACATCATAAA
TAAAGAAGATTCTGCAAATGAAGTCTATATATACGTATAGCATTTGTTAGATTTCCTTCCTTTT
TAAAAACGTATTAGCAGTTCTTGAATTCCTTAAAATCTTATTTTCCAAAGAGGATCTACAGAAC
ATTTCATATTCTTTGCCTTTTTAAGTGCTGAAAGTTAGTACATAATACCTCAGGGGCAACGTAG
TTTGGCGTTCCACAAGCTGTATGAAGCAAACCATCTTC
Number of exons covered
AT1G01140.3:2
AT1G01140.1:2
AT1G01140.2:2
Conserved circRNAs
NA
Coding potential
Y
Potential coding position
65793-65741(-)
Potential amino acid sequence
MAGYLPFDEPNLMTLYKREDGLLHTACGTPNYVAPEVLSDKGYDGAAADVWSCGVILFVLMAGY
LPFDEPNLMTLYKREDGLLHTACGTPNYVAPEVLSDKGYDGAAADVWSCGVILFVLMAGYLPFD
EPNLMTLYKREDGLLHTACGTPNYVAPEVLSDKGYDGAAADVWSCGVILFVLMAGYLPFDEPNL
MTLYKR(-)
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
 VISUALIZATION
References
Chu et al., 2017

Copyright©2017-2018 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2020-04-30.

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