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Detail information of AT1G01320_circ_g.1


circRNA ID
AT1G01320_circ_g.1
Alias
ath_circ_000020, At_ciR5170
Organism
Arabidpsis thaliana
Position
chr1: 121669-121878  JBrowse»
Reference genome
TAIR10.38
Type  
e-circRNA
Identification method
find_circ
Parent gene
AT1G01320
Parent gene annotation
Tetratricopeptide repeat (TPR)-like superfamily protein
Parent gene strand
-
Alternative splicing
NA
Splice junction sequence  
TGCGTGCAACTGCGTTGTTCACATGGTTAACAGAATCCATAACTTCATCGGCGACTGCCACATC
TTGCGTGCCTTCTTTGGTTTCTTCTACACCTGAAGTcaaactgattggcattctcagtgtttgt
ttcctgtttctcctccctcttaacaaaatgctgaaagttttctcaccttcctcagatttccggt
ttccattc
Support reads
2
Tissues
leaf
Exon boundary  
No-No
Splicing signals  
GT-AG
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
NA
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
CAAACTGATTGGCATTCTCAGTGTTTGTTTCCTGTTTCTCCTCCCTCTTAACAAAATGCTGAAA
GTTTTCTCACCTTCCTCAGATTTCCGGTTTCCATTCTCCGTTTCACTGCGTGCAACTGCGTTGT
TCACATGGTTAACAGAATCCATAACTTCATCGGCGACTGCCACATCTTGCGTGCCTTCTTTGGT
TTCTTCTACACCTGAAGT
Number of exons covered
AT1G01320.3:1
AT1G01320.2:1
AT1G01320.1:1
Conserved circRNAs
NA
Coding potential
N
Potential coding position
NA
Potential amino acid sequence
NA
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
 VISUALIZATION
References
Ye et al., 2015

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For submittion, please click here. Last modified at 2020-04-30.

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