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Detail information of AT1G01010_circ_g.1


circRNA ID
AT1G01010_circ_g.1
Alias
ath_circ_000001
Organism
Arabidpsis thaliana
Position
chr1: 3996-4276  JBrowse»
Reference genome
TAIR10.38
Type  
e-circRNA
Identification method
PcircRNA_finder
Parent gene
AT1G01010
Parent gene annotation
NAC domain-containing protein 1
Parent gene strand
+
Alternative splicing
NA
Splice junction sequence  
TAAAAGGGTTTTGGTGTTCCTCGATGGAAGATACCCTGACAAAACCAAATCTGATTGGGTTATC
CACGAGTTCCACTACGACCTCTTACCAGAACATCAGtccagtcaaagtacaaatcgagagatgc
tatgtggtacttcttctctcgtagagaaaacaacaaagggaatcgacagagcaggacaacggtt
tctggtaa
Support reads
5
Tissues
whole_plant
Exon boundary  
Yes-Yes
Splicing signals  
GT-AG
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
NA
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
TCCAGTCAAAGTACAAATCGAGAGATGCTATGTGGTACTTCTTCTCTCGTAGAGAAAACAACAA
AGGGAATCGACAGAGCAGGACAACGGTTTCTGGTAAATGGAAGCTTACCGGAGAATCTGTTGAG
GTCAAGGACCAGTGGGGATTTTGTAGTGAGGGCTTTCGTGGTAAGATTGGTCATAAAAGGGTTT
TGGTGTTCCTCGATGGAAGATACCCTGACAAAACCAAATCTGATTGGGTTATCCACGAGTTCCA
CTACGACCTCTTACCAGAACATCAG
Number of exons covered
AT1G01010.1:1
Conserved circRNAs
NA
Coding potential
N
Potential coding position
NA
Potential amino acid sequence
NA
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
 VISUALIZATION
References
Chu et al., 2017

Copyright©2017-2018 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2020-04-30.

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