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Detail information of AT1G01220_circ_g.1


circRNA ID
AT1G01220_circ_g.1
Alias
ath_circ_000017
Organism
Arabidpsis thaliana
Position
chr1: 91836-92058  JBrowse»
Reference genome
TAIR10.38
Type  
u-circRNA
Identification method
circRNA_finder
Parent gene
AT1G01220
Parent gene annotation
Bifunctional fucokinase/fucose pyrophosphorylase
Parent gene strand
+
Alternative splicing
NA
Splice junction sequence  
GGCCGTTCCTGATCCAGATGGCAAACGGATCGGGTCTGGTGCTGCTACTCTCAACGCCATTTAT
GCTCTCGCTCGTCATTATGAGAAATTGGGTTTTGATtcgggtcccgacttgggatgcgattgtg
ctcacagcggctagtcctgaacaagcggagctctacgactggcagctccggcgagcgaaacgta
tgggacga
Support reads
2
Tissues
aerial
Exon boundary  
No-No
Splicing signals  
CT-AC
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
NA
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
TCGGGTCCCGACTTGGGATGCGATTGTGCTCACAGCGGCTAGTCCTGAACAAGCGGAGCTCTAC
GACTGGCAGCTCCGGCGAGCGAAACGTATGGGACGAATAGCTAGCTCCACTGTCACTTTGGCCG
TTCCTGATCCAGATGGCAAACGGATCGGGTCTGGTGCTGCTACTCTCAACGCCATTTATGCTCT
CGCTCGTCATTATGAGAAATTGGGTTTTGAT
Number of exons covered
AT1G01220.5:1
AT1G01220.2:1
AT1G01220.1:1
AT1G01220.6:1
AT1G01220.3:1
AT1G01220.8:1
AT1G01220.4:1
AT1G01220.7:1
Conserved circRNAs
NA
Coding potential
N
Potential coding position
NA
Potential amino acid sequence
NA
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
 VISUALIZATION
References
Chu et al., 2017

Copyright©2017-2018 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2020-04-30.

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