logo




Detail information of AT1G01300_circ_g.1


circRNA ID
AT1G01300_circ_g.1
Alias
ath_circ_000019
Organism
Arabidpsis thaliana
Position
chr1: 117738-118315  JBrowse»
Reference genome
TAIR10.38
Type  
e-circRNA
Identification method
SMALT, Segemehl
Parent gene
AT1G01300
Parent gene annotation
Aspartyl protease family protein 2
Parent gene strand
+
Alternative splicing
NA
Splice junction sequence  
GTTCCGGGTCGGAGCTAAGACATTGAAAAGAGCTCCGGATTTCTCACTCTTCGACACGTGTTTC
GATCTCTCCAATATGAACGAGGTTAAAGTACCGACGatggttctttcaccgtcggcgatttctc
caccgaaacgctaactttccggcgaaatcgcgttaaaggcgttgctctcggatgtggccacgac
aacgaagg
Support reads
2
Tissues
siliques and seeds
Exon boundary  
No-No
Splicing signals  
GT-AG
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
NA
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
ATGGTTCTTTCACCGTCGGCGATTTCTCCACCGAAACGCTAACTTTCCGGCGAAATCGCGTTAA
AGGCGTTGCTCTCGGATGTGGCCACGACAACGAAGGTCTCTTCGTCGGAGCCGCCGGTTTATTA
GGACTCGGTAAAGGTAAATTATCGTTCCCCGGTCAAACCGGTCACCGGTTTAATCAGAAATTCT
CTTACTGTTTAGTCGACAGATCCGCTTCTTCGAAACCTTCCTCGGTCGTCTTCGGAAACGCCGC
CGTATCACGAATCGCGAGATTCACGCCACTTTTGTCAAACCCAAAACTCGACACTTTCTACTAC
GTCGGGCTTCTGGGAATTAGCGTCGGAGGGACACGTGTCCCCGGCGTAACGGCTTCTCTTTTTA
AACTTGACCAGATCGGTAACGGTGGAGTTATTATCGATTCGGGTACGTCTGTGACCCGGTTGAT
CCGACCAGCTTATATTGCTATGAGAGACGCGTTCCGGGTCGGAGCTAAGACATTGAAAAGAGCT
CCGGATTTCTCACTCTTCGACACGTGTTTCGATCTCTCCAATATGAACGAGGTTAAAGTACCGA
CG
Number of exons covered
AT1G01300.1:1
Conserved circRNAs
NA
Coding potential
N
Potential coding position
NA
Potential amino acid sequence
NA
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
 VISUALIZATION
References
Lu et al., 2017

Copyright©2017-2018 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2020-04-30.

Supported by   nsfc    zju