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Detail information of AT1G01110_circ_g.1


circRNA ID
AT1G01110_circ_g.1
Alias
ath_circ_000012, Ath_circ_FC2512
Organism
Arabidpsis thaliana
Position
chr1: 52938-53183  JBrowse»
Reference genome
TAIR10.38
Type  
ue-circRNA
Identification method
CIRCexplorer
Parent gene
AT1G01110
Parent gene annotation
IQ-domain 18
Parent gene strand
+
Alternative splicing
NA
Splice junction sequence  
ACGCTTGTCTCATGACGGTAGTCGCAAATCCGCGTTCAGTGACTCTCACGCTGTTTTTGAATCT
CGCTATCTTCAAGATTTGTCAGATCGACAATCCATGgcaagaagagcattaagagcattaaaag
ggttagtgaagctacaagcattggtgaggggacataatgtgagaaagcaagctaaaatgacatt
aaggtgta
Support reads
1
Tissues
aerial
Exon boundary  
Yes-Yes
Splicing signals  
GT-AG
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
NA
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
GCAAGAAGAGCATTAAGAGCATTAAAAGGGTTAGTGAAGCTACAAGCATTGGTGAGGGGACATA
ATGTGAGAAAGCAAGCTAAAATGACATTAAGGTGTATGCAAGCTCTGGTTCGAGTCCAGTCTCG
TGTGCTTGACCAACGCAAACGCTTGTCTCATGACGGTAGTCGCAAATCCGCGTTCAGTGACTCT
CACGCTGTTTTTGAATCTCGCTATCTTCAAGATTTGTCAGATCGACAATCCATG
Number of exons covered
AT1G01110.1:1
AT1G01110.2:1
Conserved circRNAs
NA
Coding potential
Y
Potential coding position
53022-53180(+)
Potential amino acid sequence
MTLRCMQALVRVQSRVLDQRKRLSHDGSRKSAFSDSHAVFESRYLQDLSDRQSMARRALRALKG
LVKLQALVRGHNVRKQAKMTLRCMQALVRVQSRVLDQRKRLSHDGSRKSAFSDSHAVFESRYLQ
DLSDRQSMARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQSRVLDQRKRLSHDGS
RKSAFSDSHAVFESRYLQDLSDRQSMARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALV
RVQSRVLDQRKRLSHDGSRKSAFSDSHAVFESRYLQDLSDRQSM(+)
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
 VISUALIZATION
References
Chu et al., 2017;Chen et al., 2017

Copyright©2017-2018 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2020-04-30.

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