Detail information of AT1G01040_circ_g.2
circRNA ID
AT1G01040_circ_g.2
Alias
ath_circ_000003, Ath_circ_FC5543
Organism
Arabidpsis thaliana
Position
chr1: 27169-27406 JBrowse»
Reference genome
TAIR10.38
Identification method
CIRI
Parent gene
Parent gene annotation
Dicer-like 1
Parent gene strand
+
Alternative splicing
NA
TTTTTGCTAAATGTGCTTTTAGAGGAATGTGGTTTTCAATATTTGACTGTTTATACCATGCACA
GGGAGAATGGGTTTCATCTGGAAAGGAAGTTTGTGAaaggaagtggtcaagacgctgagaaggc
tgaccaagatgatgaaggtgagcctgttcctggaactgctagacatagagagttctatcctgaa
ggtgtggc
GGGAGAATGGGTTTCATCTGGAAAGGAAGTTTGTGAaaggaagtggtcaagacgctgagaaggc
tgaccaagatgatgaaggtgagcctgttcctggaactgctagacatagagagttctatcctgaa
ggtgtggc
Support reads
2
Tissues
NA
Genomic sequence
AAGGAAGTGGTCAAGACGCTGAGAAGGCTGACCAAGATGATGAAGGTGAGCCTGTTCCTGGAAC
TGCTAGACATAGAGAGTTCTATCCTGAAGGTGTGGCGGATGTACTTAAGGTAATATTAGCACTA
ACCTATGAAATTTTTGCTAAATGTGCTTTTAGAGGAATGTGGTTTTCAATATTTGACTGTTTAT
ACCATGCACAGGGAGAATGGGTTTCATCTGGAAAGGAAGTTTGTGA
TGCTAGACATAGAGAGTTCTATCCTGAAGGTGTGGCGGATGTACTTAAGGTAATATTAGCACTA
ACCTATGAAATTTTTGCTAAATGTGCTTTTAGAGGAATGTGGTTTTCAATATTTGACTGTTTAT
ACCATGCACAGGGAGAATGGGTTTCATCTGGAAAGGAAGTTTGTGA
Number of exons covered
AT1G01040.1:2
AT1G01040.2:2
AT1G01040.2:2
Conserved circRNAs
NA
Coding potential
N
Potential coding position
NA
Potential amino acid sequence
NA
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
References
Sun et al., 2016;Chen et al., 2017
Copyright©2017-2018 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2020-04-30.
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