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The genomic data used by the current release:
1. Jinfeng Chen, Quanfei Huang, Dongying Gao, Junyi Wang, Yongshan Lang, Tieyan Liu, Bo Li, Zetao Bai, Jose Luis Goicoechea, Chengzhi Liang, Chengbin Chen, Wenli Zhang, Shouhong Sun, Yi Liao, Xuemei Zhang, Lu Yang, Chengli Song, Meijiao Wang, Jinfeng Shi, Geng Liu, Junjie Liu, Heling Zhou, Weili Zhou, Qiulin Yu, Na An, Yan Chen, Qingle Cai, Bo Wang, Binghang Liu, Jiumeng Min, Ying Huang, Honglong Wu, Zhenyu Li, Yong Zhang, Ye Yin, Wenqin Song, Jiming Jiang, Scott A. Jackson, Rod A. Wing, Jun Wang & Mingsheng Chen. Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying Oryza genome evolution. Nat. Commun. 4, (2013).
2. Huilong Du, Ying Yu, Yanfei Ma, Qiang Gao, Yinghao Cao, Zhuo Chen, Bin Ma, Ming Qi, Yan Li, Xianfeng Zhao, Jing Wang, Kunfan Liu, Peng Qin, Xin Yang, Lihuang Zhu, Shigui Li & Chengzhi Liang. Sequencing and de novo assembly of a near complete indica rice genome. Nat. Commun. 8, 1–12 (2017).
3. Longbiao Guo Jie Qiu Zujing Han Zihong Ye Chao Chen Chuanjun Liu Xiufang Xin Chu‐Yu Ye Ying‐Ying Wang Hongqing Xie Yu Wang Jiandong Bao She Tang Jie Xu Yijie Gui Fei Fu Weidi Wang Xingchen Zhang Qianhua Zhu Xuanmin Guang Chongzhi Wang Haifeng Cui Daguang Cai Song Ge Gerald A. Tuskan Xiaohan Yang Qian Qian Sheng Yang He Jun Wang Xue‐Ping Zhou Longjiang Fan. A host plant genome (Zizania latifolia) after a century-long endophyte infection. Plant J. 83, 600–609 (2015).
4. Longbiao Guo, Jie Qiu, Chuyu Ye, Gulei Jin, Lingfeng Mao, Haiqiang Zhang, Xuefang Yang, Qiong Peng, Yingying Wang, Lei Jia, Zhangxiang Lin, Gengmi Li, Fei Fu, Chen Liu, Li Chen, Enhui Shen, Weidi Wang, Qinjie Chu, Dongya Wu, Sanling Wu, Chenyang Xia, Yongfei Zhang, Xiaomao Zhou, Lifeng Wang, Lamei Wu, Weijie Song, Yunfei Wang, Qingyao Shu, Daisuke Aoki, Emi Yumoto, Takao Yokota, Koji Miyamoto, Kazunori Okada, Do-Soon Kim, Daguang Cai, Chulong Zhang, Yonggen Lou, Qian Qian, Hirofumi Yamaguchi, Hisakazu Yamane, Chui-Hua Kong, Michael P. Timko, Lianyang Bai & Longjiang Fan. Echinochloa crus-galli genome analysis provides insight into its adaptation and invasiveness as a weed. Nat. Commun. 8, 1031 (2017).
5. Yoshihiro Kawahara, Melissa de la Bastide, John P Hamilton, Hiroyuki Kanamori, W Richard McCombie, Shu Ouyang, David C Schwartz, Tsuyoshi Tanaka, Jianzhong Wu, Shiguo Zhou, Kevin L Childs, Rebecca M Davidson, Haining Lin, Lina Quesada-Ocampo, Brieanne Vaillancourt, Hiroaki Sakai, Sung Shin Lee, Jungsok Kim, Hisataka Numa, Takeshi Itoh, C Robin Buell & Takashi Matsumoto. Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data. Rice 6, 1–10 (2013).
6. Lingfeng Mao, Hiroshi Kawaide, Toshiya Higuchi, Meihong Chen, Koji Miyamoto, Yoshiki Hirata, Honoka Kimura, Sho Miyazaki, Miyu Teruya, Kaoru Fujiwara, Keisuke Tomita, Hisakazu Yamane, Ken-ichiro Hayashi, Hideaki Nojiri, Lei Jia, Jie Qiu, Chuyu Ye, Michael P. Timko, Longjiang Fan, Kazunori Okada. Genomic evidence for convergent evolution of gene clusters for momilactone biosynthesis in land plants. PNAS 117, 12472-12480 (2020).
7. Jie Qiu, Lei Jia, Dongya Wu, Xifang Weng, Lijuan Chen, Jian Sun, Meihong Chen, Lingfeng Mao, Bowen Jiang, Chuyu Ye, Guilherme Menegol Turra, Longbiao Guo, Guoyou Ye, Qian-Hao Zhu, Toshiyuki Imaizumi, Beng-Kah Song, Laura Scarabel, Aldo Merotto Jr, Kenneth M. Olsen & Longjiang Fan. Diverse genetic mechanisms underlie worldwide convergent rice feralization. Genome Biol. 21, 70 (2020).
8. Joshua C. Stein, Yeisoo Yu, Dario Copetti, Derrick J. Zwickl, Li Zhang, Chengjun Zhang, Kapeel Chougule, Dongying Gao, Aiko Iwata, Jose Luis Goicoechea, Sharon Wei, Jun Wang, Yi Liao, Muhua Wang, Julie Jacquemin, Claude Becker, Dave Kudrna, Jianwei Zhang, Carlos E. M. Londono, Xiang Song, Seunghee Lee, Paul Sanchez, Andrea Zuccolo, Jetty S. S. Ammiraju, Jayson Talag, Ann Danowitz, Luis F. Rivera, Andrea R. Gschwend, Christos Noutsos, Cheng-chieh Wu, Shu-min Kao, Jhih-wun Zeng, Fu-jin Wei, Qiang Zhao, Qi Feng, Moaine El Baidouri, Marie-Christine Carpentier, Eric Lasserre, Richard Cooke, Daniel da Rosa Farias, Luciano Carlos da Maia, Railson S. dos Santos, Kevin G. Nyberg, Kenneth L. McNally, Ramil Mauleon, Nickolai Alexandrov, Jeremy Schmutz, Dave Flowers, Chuanzhu Fan, Detlef Weigel, Kshirod K. Jena, Thomas Wicker, Mingsheng Chen, Bin Han, Robert Henry, Yue-ie C. Hsing, Nori Kurata, Antonio Costa de Oliveira, Olivier Panaud, Scott A. Jackson, Carlos A. Machado, Michael J. Sanderson, Manyuan Long, Doreen Ware & Rod A. Wing. Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza. Nat. Genet. 50, 285–296 (2018).
9. Jian Sun, Dianrong Ma, Liang Tang, Minghui Zhao, Guangchen Zhang, Wenjia Wang, Jiayu Song, Xiang Li, Zimeng Liu, Wenxing Zhang, Quan Xu, Yuncheng Zhou, Jianzhong Wu, Toshio Yamamoto, Fei Dai, Yan Lei, Song Li, Gang Zhou, Hongkun Zheng, Zhengjin Xu, Wenfu Chen. Population genomic analysis and de novo assembly reveal the origin of weedy rice as an evolutionary game. Mol. Plant 12, 632–647 (2019).
10. Muhua Wang, Yeisoo Yu, Georg Haberer, Pradeep Reddy Marri, Chuanzhu Fan, Jose Luis Goicoechea, Andrea Zuccolo, Xiang Song, Dave Kudrna, Jetty S S Ammiraju, Rosa Maria Cossu, Carlos Maldonado, Jinfeng Chen, Seunghee Lee, Nick Sisneros, Kristi de Baynast, Wolfgang Golser, Marina Wissotski, Woojin Kim, Paul Sanchez, Marie-Noelle Ndjiondjop, Kayode Sanni, Manyuan Long, Judith Carney, Olivier Panaud, Thomas Wicker, Carlos A Machado, Mingsheng Chen, Klaus F X Mayer, Steve Rounsley & Rod A Wing. The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication. Nat. Genet. 46, 982–988 (2014).
11. Zhigang Wu, Dongming Fang, Rui Yang, Fei Gao, Xingyu An, Xiaoxuan Zhuo, Yafei Li, Chuandeng Yi, Tao Zhang, Chengzhi Liang, Peng Cui, Zhukuan Cheng，Qiong Luo. De novo genome assembly of Oryza granulata reveals rapid genome expansion and adaptive evolution Commun. Biol. 1, 1–10 (2018).
12. Chuyu Ye, Dongya Wu, Lingfeng Mao, Lei Jia, Jie Qiu, Sangting Lao, Meihong Chen, Bowen Jiang, Wei Tang, Qiong Peng, Lang Pan, Lifeng Wang, Xiaoxiao Feng, Longbiao Guo, Chulong Zhang, Elizabeth A Kellogg, Kenneth M Olsen, Lianyang Bai, Longjiang Fan. The genomes of the allohexaploid Echinochloa crus-galli and its progenitors provide insights into polyploidization-driven adaptation. Mol. Plant (2020).