All 21 plant species in PlantcircBase
A total of 21 plant species were collected in PlantcircBase
New features in Release 7.0
31,109 circRNAs with full-length transcripts.
PMCS (plant multiple conservation score) was calculated.
Expression patterns were explored in scRNA-seq data.
A total of 171,118 circRNAs from 21 plant species were collected.
The number of circRNAs in each plant species ranges from tens to tensof thousands. The top two plant species that have the most circRNAs are Arabidopsis thaliana and Oryza sativa.
A total of 21 plant species were collected in PlantcircBase
News of PlantcircBase
PlantcircBase Release 7 online! Totally, 21 organisms and 171,118 circRNAs! Circular RNAs from Panax ginseng have been added to PlantcircBase.
Read MoreXu X., Du T., Mao W., Li X., Ye C., Zhu Q., Fan L., Chu Q.* PlantcircBase 7.0: full-length transcripts and conservation of plant circRNAs. Plant Communications, 2022, 100343
Chu Q., Bai P., Zhu X., Zhang X., Mao L., Zhu Q., Fan L., Ye C.*, Characteristics of plant circular RNAs, Briefings in Bioinformatics, 2020-01: 135-143
Chu Q.#, Zhang X.#, Zhu X., Liu C., Mao L., Ye C., Zhu Q., Fan L.*, PlantcircBase: A Database for Plant Circular RNAs, Molecular Plant, 2017, 10(8): 1126-1128
Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Please contact Fan's lab, qinjiechu@zju.edu.cn
