In the genetic map, the names of SSR markers and the distances (cM) between adjacent markers are shown on the left side and right side,respectively. In the physical map, the black or green boxes represent contigs, of which the names are shown on the left side (note: the full name of a contig is in the form ‘contig5.number’; the prefix ‘contig5.’ is omitted in the figure). The white and yellow segments in the physical map represent gaps. Markers with unknown physical positions or mapped to altered positions (not expected according to the physical map) are marked with asterisk or octothorpe; their corresponding contigs are represented by dark gray boxes in the physical map and the names of the contigs are also marked with asterisk or octothorpe accordingly. Markers and corresponding contigs are all connected with solid or dashed lines.

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