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Network-guided focused screen candidate search form

Place your seed gene(s) below (Max=100).

  • Search reports would be based on TIGR Locus (e.g. LOC_Os01g40630 ) in Rice Genome Annotation Project (http://rice.plantbiology.msu.edu/).
  • Rice Locus identifer should be in the correct lower/uppercase combination currently
  • Each gene name must be separated by new line.

Example query genes (regulation of flowering) :


A simple example here is a list of 16 genes related in flowering.

 

The method of this network is based on the paper:

A single network comprising the majority of genes accurately predicts the phenotypic effects of gene perturbation in C. elegans
Insuk Lee, Ben Lehner, Catriona Crombie, Wendy Wang, Andrew G. Fraser, and Edward M. Marcotte Nature Genetics, Vol 40, p181-188 (2008)
RiceNet

Evidence codes for 6 types of data sets incorporated in RiceNet
Evidence code Data set description
COEXP mRNA co-expression
Y2H Protein-protein Interaction data from Y2H
PPIA Protein-protein Interaction infered form Arabidopsis
CCR Co-cited in same paper dataming from Rice
CCA Co-cited in same paper dataming from Arabidopsis
PATH Rice Cyc pathway information from Gramene
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