| Online Databases/Tools by Bioinplant Lab: |
| PlantcircBase: a database for plant circular RNAs. Chu et al., 2017, Molecular Plant |
| Software by Bioinplant Lab: |
| Scan_phasiRNA: a program to find loci with 21nt phased siRNAs (such as ta-siRNA gene TAS) using the Howell algorithm (Download). Shen et al., 2009, Plant Systematics and Evolution |
| eTM_finder: a tool to predict eTMs (endogenous target mimics) of miRNAs in plants (Download). Ye et al., 2014, Frontiers in Plant Science |
| circseq-cup: a program to assemble full-length sequences of circular RNAs (Download). Ye et al., 2016, RNA Biology |
| PcircRNA-finder: a program to identify circular RNAs in plants (Download). Chen et al., 2016, Bioinformatics |
| circRNA pocket: a tool for visualization of circular RNAs (Download). Zhang et al., unpublished |
| TOD-Bayes: A naïve Bayes algorithm for tissue origin diagnosis of synchronous multifocal tumors in the hepatobiliary and pancreatic system (Download). Jiang et al., unpublished |
| Other Public Bioinformatic Tools: |
| DNATOOL |
| TREEView |
| PCGENE |
| CLUSTALX |
| GENDOC32 |
| PRIMER5 |
| QTLMapper_V1.6 |
| QTLNetwork 1.0 |
| WinQTLCart (V2.0) |
| GenScan |
| Sequin |
| Antheprot |
| Rasmol |
| Swiss-PDBViewer |
| Chromos2.13 |
| MEGA 5.05 |