Online Databases/Tools by Bioinplant Lab: |
PlantcircBase: a database for plant circular RNAs. Chu et al., 2017, Molecular Plant |
Software by Bioinplant Lab: |
Scan_phasiRNA: a program to find loci with 21nt phased siRNAs (such as ta-siRNA gene TAS) using the Howell algorithm (Download). Shen et al., 2009, Plant Systematics and Evolution |
eTM_finder: a tool to predict eTMs (endogenous target mimics) of miRNAs in plants (Download). Ye et al., 2014, Frontiers in Plant Science |
circseq-cup: a program to assemble full-length sequences of circular RNAs (Download). Ye et al., 2016, RNA Biology |
PcircRNA-finder: a program to identify circular RNAs in plants (Download). Chen et al., 2016, Bioinformatics |
circRNA pocket: a tool for visualization of circular RNAs (Download). Zhang et al., unpublished |
TOD-Bayes: A naïve Bayes algorithm for tissue origin diagnosis of synchronous multifocal tumors in the hepatobiliary and pancreatic system (Download). Jiang et al., unpublished |
Other Public Bioinformatic Tools: |
DNATOOL |
TREEView |
PCGENE |
CLUSTALX |
GENDOC32 |
PRIMER5 |
QTLMapper_V1.6 |
QTLNetwork 1.0 |
WinQTLCart (V2.0) |
GenScan |
Sequin |
Antheprot |
Rasmol |
Swiss-PDBViewer |
Chromos2.13 |
MEGA 5.05 |