| Datasets | Brief Description | Size | Last Modified |
|---|---|---|---|
| 3K_Varieties.txt a | The material information of 3000 rice accessions. | 384 Kb | 2017/10/12 |
| All_TE_Locus.txt b | The information of all TE loci identified in this study. | 7.2 Mb | 2017/10/12 |
| TE_Locus_in_Genes.txt b | The information of TE loci associated with genes and the annotation data of the corresponding genes. | 5.7 Mb | 2017/10/12 |
| Genotyping_Matrix.txt c | The Presence/absence matrix for all identified TE loci in 3000 rice accessions. | 512 Mb | 2017/10/12 |
| Flanking_Sequences.txt b | The 200bp sequences flanking TE loci. | 40 Mb | 2017/10/12 |
| TE_RefSeq.txt d | The reference sequences of each TE family. | 2.7 Mb | 2017/10/12 |
a The information involved in this file was referenced from the 3,000 rice genomes project, 2014, Giga science.
b The Os-Nipponbare-Reference-IRGSP-1.0 pseudomolecules and MSU Rice Genome Annotation Project Release 7 were used here.
c In the matrix, “1” and “0” represented the presence and absence of TE insertions, respectively, whereas “?” represented missing data at the corresponding loci. Decimal meant heterozygosity.
d The reference sequences of rice transposons were obtain from Repbase and TIGR.