TE_sites Chr Star End TE_Ori TE_id TE_Length Pop_Freq RefGen Description Mates Os_TE_1108 ChrUn 627641 627839 - COWARD-3 221 0.7720 (1920/2487) 0.86 Intact * Os_TE_1104 ChrUn 625369 625368 + YOUREN 286 0.0072 (21/2927) 0 * * Os_TE_1101 ChrUn 624810 624809 - SZ-55_LTR 10318 0.0003 (1/2981) 0 * * Os_TE_1099 ChrUn 624373 624374 + COPI2_LTR 4733 0.0007 (2/2989) 0 * Os_TE_1098 Os_TE_1098 ChrUn 624369 624368 - COPI2_LTR 4733 0.0003 (1/2992) 0 * Os_TE_1099 Os_TE_752 ChrUn 378841 379088 - ORSgTEMT00900075 250 0.2533 (517/2041) -1 Intact * Os_TE_749 ChrUn 376065 376064 + TRUNCATOR 2918 0.1627 (339/2084) -1 * * Os_TE_721 ChrUn 359148 359149 - TYPEU1 380 0.0046 (3/654) -1 * Os_TE_720 Os_TE_720 ChrUn 359139 359138 + TYPEU4 402 0.0046 (3/653) -1 * Os_TE_721 Os_TE_681 ChrUn 339283 274382 - ORSgTETN00200001 10994 0.7124 (369/518) -1 Intact * Os_TE_539 ChrUn 272905 272904 - RIRE3_LTR 12054 0.2017 (117/580) -1 * * Os_TE_445 ChrUn 218257 218256 - TYPEM 227 0.0009 (1/1092) -1 * Os_TE_444 Os_TE_444 ChrUn 218256 218257 - ORSgTEMT02400246 177 0.0009 (1/1090) -1 * Os_TE_445 Os_TE_443 ChrUn 217997 217996 + STOWAWAY1_OS 149 0.2610 (284/1088) -1 * * Os_TE_440 ChrUn 217007 217008 + RIREX_LTR 8828 0.0427 (37/866) -1 * * Os_TE_412 ChrUn 205345 185948 + COPIA1-LTR_OS 9292 0.7512 (610/812) -1 Intact Os_TE_401 Os_TE_401 ChrUn 185948 187160 - SZ-5LTR 1223 0.7172 (525/732) -1 Intact Os_TE_412 Os_TE_399 ChrUn 185292 185291 + ORSgTEMT01601591 242 0.0009 (1/1088) -1 * Os_TE_398 Os_TE_398 ChrUn 185286 185287 + STOWAWAY51_OS 246 0.0009 (1/1091) -1 * Os_TE_399 Os_TE_388 ChrUn 178479 178480 - RIREX_LTR 8828 0.0017 (1/603) -1 * Os_TE_387 Os_TE_387 ChrUn 178475 178474 + RIREX_LTR 8828 0.0017 (1/597) -1 * Os_TE_388 Os_TE_347 ChrUn 159127 159128 + STOWAWAY11_OS 292 0.2101 (163/776) -1 * * Os_TE_317 ChrUn 147365 147366 - DS-RICE2N 613 0.0160 (34/2128) -1 * Os_TE_316 Os_TE_316 ChrUn 147358 147357 + DS-RICE4N 715 0.0155 (33/2135) -1 * Os_TE_317 Os_TE_278 ChrUn 121919 121918 - TYPEM 227 0.0005 (1/1908) 0 * Os_TE_277 Os_TE_277 ChrUn 121918 121919 - ORSgTEMT02400246 177 0.0006 (1/1715) -1 * Os_TE_278 Os_TE_270 ChrUn 119697 119696 + SPMLIKE 10989 0.0012 (2/1657) -1 * * Os_TE_266 ChrUn 118778 118777 - ORSgTEMT01600747 238 0.0019 (3/1586) -1 * * Os_TE_239 ChrUn 99070 99071 - RIREX_LTR 8828 0.0016 (4/2549) 0 * * Os_TE_9 ChrUn 2005 2004 - COPIA2-LTR_OS 6433 0.0013 (3/2354) -1 * * Os_TE_5 ChrUn 1716 1715 - DS-RICE2N 613 0.0018 (4/2238) 0 * * Os_TE_1 ChrUn 271 270 + SC-1_LTR 6888 0.0590 (174/2948) 0 * * Os_TE_1973 ChrSy 519117 519118 - SZ-22_LTR 4403 0.0003 (1/2980) 0 * * Os_TE_1944 ChrSy 512302 512301 + ORSiTERTOOT00226 792 0.0003 (1/2984) 0 * * Os_TE_1943 ChrSy 512223 512224 + ORSiTERTOOT00034 791 0.0007 (2/2987) 0 * * Os_TE_1938 ChrSy 508567 508568 - CRM-LTR_OS 7749 0.0003 (1/2919) 0 * * Os_TE_1935 ChrSy 508380 508379 - CRM-LTR_OS 7749 0.0003 (1/2939) 0 * * Os_TE_1934 ChrSy 508306 508307 + ORSiTERTOOT00226 792 0.0003 (1/2944) 0 * Os_TE_1933 Os_TE_1933 ChrSy 508302 508301 - SZ-22_LTR 4403 0.0003 (1/2941) 0 * Os_TE_1934 Os_TE_1632 ChrSy 339355 339356 + SC-8_LTR 4951 0.0003 (1/2985) 0 * Os_TE_1631 Os_TE_1631 ChrSy 339351 339350 - SC-8_LTR 4951 0.0003 (1/2984) 0 * Os_TE_1632 Os_TE_1587 ChrSy 321931 321932 + ORSgTEMT01701145 147 0.0005 (1/1918) 0 * * Os_TE_1556 ChrSy 300266 300265 + RIREX_LTR 8828 0.0018 (4/2266) 0 * * Os_TE_1536 ChrSy 292118 292020 - ORSgTETNOOT00118 134 0.1040 (305/2934) 1 Intact Os_TE_1532 Os_TE_1532 ChrSy 292011 292115 + ORSgTEMT00500201 140 0.1018 (302/2968) 1 Intact Os_TE_1536 Os_TE_1531 ChrSy 291600 291601 - HARB-1_OS 5166 0.0003 (1/2955) 0 * Os_TE_1530 Os_TE_1530 ChrSy 291598 291597 + HARB-1_OS 5166 0.0003 (1/2941) 0 * Os_TE_1531 Os_TE_1516 ChrSy 272505 272506 - COPIA2-LTR_OS 6433 0.0003 (1/2874) 0 * * Os_TE_1515 ChrSy 272245 272246 + HARB-1_OS 5166 0.0349 (98/2811) 0 * Os_TE_1514 Os_TE_1514 ChrSy 272243 272242 - HARB-1_OS 5166 0.0004 (1/2240) 0 * Os_TE_1515 Os_TE_1489 ChrSy 263499 263500 - INDITTO 263 0.0267 (80/2991) 0 * Os_TE_1488 Os_TE_1488 ChrSy 263497 263496 + INDITTO 263 0.0162 (43/2654) 0 * Os_TE_1489 Os_TE_1464 ChrSy 234972 234973 - RIRE3_LTR 12054 0.6940 (440/634) 0 * * Os_TE_1455 ChrSy 233786 233787 + OSTE33 1012 0.3236 (487/1505) 0 * Os_TE_1454 Os_TE_1454 ChrSy 233778 233777 + OSTE33 1012 0.3624 (578/1595) 0 * Os_TE_1455 Os_TE_1447 ChrSy 233192 233191 - RETROSAT2LTRA 3112 0.0031 (5/1632) 0 * * Os_TE_1446 ChrSy 233128 233129 + OSMU5 4881 0.0939 (153/1630) 0 * Os_TE_1445 Os_TE_1445 ChrSy 233120 233119 + OSMU5 4881 0.0968 (159/1643) 0 * Os_TE_1446 Os_TE_1435 ChrSy 232264 232598 - ORSgTEMT00100582 334 0.4796 (775/1616) 1 Intact * Os_TE_1428 ChrSy 231469 231468 + RETRO1_LTR 8314 0.0038 (6/1564) 0 * * Os_TE_1410 ChrSy 218358 218359 + ORSiTERTOOT00226 792 0.0004 (1/2648) 0 * * Os_TE_1380 ChrSy 195616 195617 + TRUNCATOR 2918 0.1546 (463/2994) 0 * * Os_TE_1379 ChrSy 195614 195613 - RIRE2_LTR 11306 0.0267 (75/2811) 0 * * Os_TE_1378 ChrSy 195380 195381 - RIREX_LTR 8828 0.0268 (80/2990) 0 * * Os_TE_1360 ChrSy 190264 190265 + F770 284 0.0279 (82/2944) 0 * * Os_TE_1347 ChrSy 188308 188309 + DS-RICE4N 715 0.0271 (79/2919) 0 * * Os_TE_1324 ChrSy 166957 166958 - SZ-36LTR 5825 0.0011 (3/2644) 0 * Os_TE_1323 Os_TE_1323 ChrSy 166953 166952 + ORSiCMCM00100017 5674 0.0018 (5/2746) 0 * Os_TE_1324 Os_TE_1306 ChrSy 160026 160027 - MPING 430 0.0003 (1/2910) 0 * Os_TE_1305 Os_TE_1305 ChrSy 160024 160023 + MPING 430 0.0003 (1/2901) 0 * Os_TE_1306 Os_TE_1255 ChrSy 123587 123586 - ORSiTERT00100062 5674 0.0010 (1/965) 0 * * Os_TE_1242 ChrSy 119160 119161 - MERMITE18C 1473 0.3061 (259/846) 0 * * Os_TE_1229 ChrSy 115851 115852 + ORSgTEMT00501786 149 0.0010 (1/962) 0 * * Os_TE_1201 ChrSy 96642 96641 - RIREX_LTR 8828 0.0010 (3/2978) 0 * * Os_TE_1200 ChrSy 85239 85240 - SZ-36LTR 5825 0.0357 (1/28) -1 * * Os_TE_1195 ChrSy 34363 34362 - EnSpm-16_OS 13336 0.0030 (9/2981) 0 * * Os_TE_1189 ChrSy 29654 29321 + NDNA1TNA_OS 334 0.1745 (517/2962) 1 Intact Os_TE_1187 Os_TE_1187 ChrSy 29319 29652 + ORSgTEMT00100531 325 0.1777 (527/2965) 1 Intact Os_TE_1189 Os_TE_1171 ChrSy 21219 21218 - ORSgTERT00201376 319 0.4007 (1199/2992) 0.81 * * Os_TE_1162 ChrSy 16097 16098 + TWIFBIG 3567 0.0318 (39/1226) 0 * Os_TE_1161 Os_TE_1161 ChrSy 16090 16089 - ORSiTETNOOT00134 607 0.0319 (47/1474) 0 * Os_TE_1162 Os_TE_1147 ChrSy 10159 10158 + ORSiTERTOOT00226 792 0.0008 (2/2627) 0 * * Os_TE_55537 Chr9 22929869 22929868 - TRUNCATOR 2918 0.6088 (1821/2991) 0 * Os_TE_55536 Os_TE_55536 Chr9 22929868 22929869 + TRUNCATOR 2918 0.6118 (1833/2996) 0 * Os_TE_55537 Os_TE_55529 Chr9 22925019 22925020 + RIRE3_LTR 12054 0.0003 (1/2954) 0 * Os_TE_55528 Os_TE_55528 Chr9 22925015 22925014 - RIRE3_LTR 12054 0.0003 (1/2953) 0 * Os_TE_55529 Os_TE_55520 Chr9 22923888 22923887 - SC-8_LTR 4951 0.0003 (1/2985) 0 * * Os_TE_55517 Chr9 22919924 22919925 + SC-8_LTR 4951 0.0003 (1/2991) 0 * Os_TE_55516 Os_TE_55516 Chr9 22919920 22919919 - SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_55517 Os_TE_55495 Chr9 22908977 22908976 - COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * * Os_TE_55494 Chr9 22908536 22908537 - RIREX_LTR 8828 0.0077 (23/2997) 0 * Os_TE_55493 Os_TE_55493 Chr9 22908532 22908531 + RIREX_LTR 8828 0.0077 (23/2997) 0 * Os_TE_55494 Os_TE_55483 Chr9 22906325 22906326 + RIRE2_LTR 11306 0.0003 (1/2953) 0 * Os_TE_55482 Os_TE_55482 Chr9 22906321 22906320 - RIRE2_LTR 11306 0.0003 (1/2950) 0 * Os_TE_55483 Os_TE_55459 Chr9 22899623 22899624 - ORSgTEMT00600478 361 0.0004 (1/2701) 0 * * Os_TE_55449 Chr9 22898005 22898004 + OSTE21 1271 0.0003 (1/2986) 0 * Os_TE_55448 Os_TE_55448 Chr9 22897996 22897997 + OSTE21 1271 0.0003 (1/2991) 0 * Os_TE_55449 Os_TE_55446 Chr9 22896848 22896847 - KRISPIE 956 0.0121 (36/2977) 0 * * Os_TE_55438 Chr9 22895647 22895648 + TELIA 141 0.0010 (3/2994) 0 * Os_TE_55437 Os_TE_55437 Chr9 22895639 22895638 - TELIA 141 0.0010 (3/2997) 0 * Os_TE_55438 Os_TE_55436 Chr9 22895637 22895638 + ORSgTEMT01601591 242 0.0010 (3/2992) 0 * * Os_TE_55424 Chr9 22893942 22893941 - RIRE3A_LTR 10580 0.0003 (1/2977) 0 * * Os_TE_55406 Chr9 22887732 22887731 + OSTE18 129 0.0003 (1/2984) 0 * * Os_TE_55330 Chr9 22852105 22852106 - INDITTO 263 0.0007 (2/2971) 0 * Os_TE_55329 Os_TE_55329 Chr9 22852103 22852102 + INDITTO 263 0.0007 (2/2964) 0 * Os_TE_55330 Os_TE_55310 Chr9 22849117 22849118 + JINHUA 479 0.0005 (1/2086) 0 * * Os_TE_55306 Chr9 22846747 22846748 + TELIA 141 0.0003 (1/2971) 0 * Os_TE_55305 Os_TE_55305 Chr9 22846739 22846738 - TELIA 141 0.0003 (1/2968) 0 * Os_TE_55306 Os_TE_55289 Chr9 22842463 22842462 - KRISPIE 956 0.0126 (34/2689) 0 * * Os_TE_55286 Chr9 22841400 22841399 + ORSgTEMT02000018 177 0.0004 (1/2702) 0 * * Os_TE_55230 Chr9 22823126 22823127 - COPIA2-LTR_OS 6433 0.0003 (1/2943) 0 * * Os_TE_55228 Chr9 22822979 22822980 - RIREX_LTR 8828 0.0003 (1/2945) 0 * Os_TE_55227 Os_TE_55227 Chr9 22822975 22822974 + RIREX_LTR 8828 0.0003 (1/2937) 0 * Os_TE_55228 Os_TE_55203 Chr9 22815597 22815598 - TRUNCATOR2_LTR 2904 0.0003 (1/2994) 0 * Os_TE_55202 Os_TE_55202 Chr9 22815593 22815592 + ORSiTERTOOT00028 8600 0.0003 (1/2988) 0 * Os_TE_55203 Os_TE_55197 Chr9 22811360 22811359 + ORSiTERTOOT00355 4942 0.6723 (2015/2997) 0 * * Os_TE_55196 Chr9 22810973 22810974 + AMYLTP 383 0.0007 (2/2995) 0 * Os_TE_55195 Os_TE_55195 Chr9 22810964 22810963 - AMYLTP 383 0.0007 (2/2995) 0 * Os_TE_55196 Os_TE_55170 Chr9 22800625 22800626 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * * Os_TE_55168 Chr9 22800365 22800364 - TRUNCATOR 2918 0.0003 (1/2979) 0 * * Os_TE_55163 Chr9 22799625 22799626 + ORSgTETNOOT00908 242 0.0003 (1/2916) 0 * * Os_TE_55155 Chr9 22798539 22798538 + COPIA2-LTR_OS 6433 0.0010 (3/2980) 0 * * Os_TE_55147 Chr9 22795280 22795281 + COPI1_LTR 4721 0.0003 (1/2996) 0 * * Os_TE_55138 Chr9 22788693 22788694 - RETRO2_LTR 12874 0.6602 (1850/2802) 0 * Os_TE_55137 Os_TE_55137 Chr9 22788689 22788688 + RETRO2A_LTR 12895 0.6434 (1752/2723) 0 * Os_TE_55138 Os_TE_55136 Chr9 22788675 22788674 + SZ-48LTR 3632 0.0010 (1/1006) 0 * * Os_TE_55121 Chr9 22783241 22783242 + SC-8_LTR 4951 0.0013 (4/2990) 0 * Os_TE_55120 Os_TE_55120 Chr9 22783237 22783236 - SC-8_LTR 4951 0.0013 (4/2994) 0 * Os_TE_55121 Os_TE_55117 Chr9 22780240 22780239 - ORSgTETNOOT01028 232 0.0010 (3/2987) 0 * * Os_TE_55114 Chr9 22778429 22778428 + MPING 430 0.0010 (1/1030) 0 * * Os_TE_55097 Chr9 22763614 22763613 - CENTRE 280 0.0003 (1/2996) 0 * * Os_TE_55081 Chr9 22756628 22756629 + SZ-55_LTR 10318 0.0013 (4/2995) 0 * Os_TE_55080 Os_TE_55080 Chr9 22756624 22756623 - SZ-55_LTR 10318 0.0013 (4/2997) 0 * Os_TE_55081 Os_TE_55079 Chr9 22754483 22754484 - HARB-1_OS 5166 0.0003 (1/2958) 0 * Os_TE_55078 Os_TE_55078 Chr9 22754481 22754480 + HARB-1_OS 5166 0.0003 (1/2990) 0 * Os_TE_55079 Os_TE_55033 Chr9 22731814 22731813 - STOWAWAY51_OS 246 0.0003 (1/2974) 0 * Os_TE_55032 Os_TE_55032 Chr9 22731811 22731812 - STOWAWAY51_OS 246 0.0003 (1/2977) 0 * Os_TE_55033 Os_TE_55028 Chr9 22730967 22730966 + INDITTO 263 0.6066 (1810/2984) 0 * Os_TE_55027 Os_TE_55027 Chr9 22730966 22730967 - INDITTO 263 0.6127 (1835/2995) 0 * Os_TE_55028 Os_TE_55024 Chr9 22727137 22727138 + ORSgTERT00201346 4268 0.0003 (1/2996) 0 * * Os_TE_55021 Chr9 22724160 22724161 - SC-8_LTR 4951 0.0003 (1/2993) 0 * Os_TE_55020 Os_TE_55020 Chr9 22724156 22724155 + SC-8_LTR 4951 0.0003 (1/2994) 0 * Os_TE_55021 Os_TE_55008 Chr9 22717064 22717063 - COPIA2-LTR_OS 6433 0.0003 (1/2986) 0 * * Os_TE_55002 Chr9 22712598 22712599 - ORSiTETNOOT00134 607 0.0003 (1/2953) 0 * Os_TE_55001 Os_TE_55001 Chr9 22712591 22712590 + TWIF 586 0.0003 (1/2952) 0 * Os_TE_55002 Os_TE_54994 Chr9 22707412 22707413 + ORSgTETNOOT00221 261 0.0003 (1/2979) 0 * * Os_TE_54985 Chr9 22703864 22703865 + TWIF 586 0.0003 (1/2996) 0 * Os_TE_54984 Os_TE_54984 Chr9 22703857 22703856 - ORSiTETNOOT00134 607 0.0003 (1/2995) 0 * Os_TE_54985 Os_TE_54962 Chr9 22682228 22682227 + ORSgTEMT01601122 212 0.0007 (2/2989) 0 * Os_TE_54961 Os_TE_54961 Chr9 22682227 22682228 + STOWAWAY21_OS 243 0.0007 (2/2991) 0 * Os_TE_54962 Os_TE_54960 Chr9 22681795 22681796 - ORSiTETNOOT00156 3648 0.0003 (1/2904) 0 * * Os_TE_54954 Chr9 22677421 22677422 - MPING 430 0.0003 (1/2996) 0 * Os_TE_54953 Os_TE_54953 Chr9 22677419 22677418 + MPING 430 0.0003 (1/2996) 0 * Os_TE_54954 Os_TE_54952 Chr9 22677229 22677230 - SZ-48LTR 3632 0.0003 (1/2996) 0 * Os_TE_54951 Os_TE_54951 Chr9 22677225 22677224 + SZ-48LTR 3632 0.0003 (1/2996) 0 * Os_TE_54952 Os_TE_54937 Chr9 22665942 22665941 + ORSgTETNOOT00908 242 0.0020 (6/2990) 0 * * Os_TE_54932 Chr9 22662586 22662585 + ORSgTEMT00100531 325 0.6676 (1990/2981) 0 * Os_TE_54931 Os_TE_54931 Chr9 22662574 22662575 + NDNA1TNA_OS 334 0.6705 (2004/2989) 0 * Os_TE_54932 Os_TE_54930 Chr9 22661707 22661708 - NDNA1TNA_OS 334 0.0003 (1/2992) 0 * Os_TE_54929 Os_TE_54929 Chr9 22661705 22661704 + NDNA1TNA_OS 334 0.0003 (1/2993) 0 * Os_TE_54930 Os_TE_54928 Chr9 22661561 22661560 + ORSgTEMT01601122 212 0.0003 (1/2988) 0 * * Os_TE_54921 Chr9 22658253 22658254 - COPIA2-LTR_OS 6433 0.0003 (1/2972) 0 * Os_TE_54920 Os_TE_54920 Chr9 22658249 22658248 + COPIA2-LTR_OS 6433 0.0003 (1/2976) 0 * Os_TE_54921 Os_TE_54911 Chr9 22652822 22652823 - COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * Os_TE_54910 Os_TE_54910 Chr9 22652818 22652817 + COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * Os_TE_54911 Os_TE_54900 Chr9 22642932 22642931 - ORSgTEMT01602413 239 0.0017 (5/2991) 0 * Os_TE_54899 Os_TE_54899 Chr9 22642929 22642930 - ORSgTEMT01602413 239 0.0010 (3/2993) 0 * Os_TE_54900 Os_TE_54892 Chr9 22642351 22642352 - COPIA2-LTR_OS 6433 0.0007 (2/2986) 0 * * Os_TE_54889 Chr9 22642025 22642024 + ORSgTETNOOT00908 242 0.0017 (5/2987) 0 * * Os_TE_54888 Chr9 22641752 22641753 + HARB-1_OS 5166 0.0007 (2/2987) 0 * Os_TE_54887 Os_TE_54887 Chr9 22641750 22641749 - HARB-1_OS 5166 0.0007 (2/2997) 0 * Os_TE_54888 Os_TE_54886 Chr9 22641744 22641743 - RIRE2_LTR 11306 0.0013 (4/2985) 0 * * Os_TE_54885 Chr9 22641710 22641711 + ORSgTEMT00501027 149 0.0033 (10/2997) 0 * Os_TE_54884 Os_TE_54884 Chr9 22641709 22641708 - ORSgTEMT00501711 149 0.0033 (10/2998) 0 * Os_TE_54885 Os_TE_54854 Chr9 22631243 22631244 - TEMPINDAS 4259 0.0007 (2/2989) 0 * * Os_TE_54819 Chr9 22616553 22616554 + ORSiTERTOOT00366 5449 0.0003 (1/2987) 0 * * Os_TE_54786 Chr9 22601163 22601164 - ORSgTEMT02400179 221 0.0003 (1/2997) 0 * Os_TE_54785 Os_TE_54785 Chr9 22601162 22601161 - TYPEM 227 0.0003 (1/2997) 0 * Os_TE_54786 Os_TE_54784 Chr9 22601091 22601092 + ORSgTETNOOT01219 231 0.0010 (3/2919) 0 * Os_TE_54783 Os_TE_54783 Chr9 22601083 22601082 + ORSgTETNOOT00908 242 0.0010 (3/2994) 0 * Os_TE_54784 Os_TE_54759 Chr9 22591766 22591452 - ORSgTEMT01602719 315 0.2134 (457/2142) -1 Intact * Os_TE_54747 Chr9 22577738 22577737 + COPI2_LTR 4733 0.0020 (6/2998) 0 * * Os_TE_54735 Chr9 22569186 22569185 - ORSgTEMT02600002 356 0.0013 (4/2986) 0 * Os_TE_54734 Os_TE_54734 Chr9 22569183 22569184 - ORSgTEMT00101174 225 0.0017 (5/2990) 0 * Os_TE_54735 Os_TE_54733 Chr9 22566453 22566452 - OSTE18 129 0.0003 (1/2997) 0 * * Os_TE_54732 Chr9 22564069 22564070 - COPI2_LTR 4733 0.0003 (1/2950) 0 * * Os_TE_54730 Chr9 22563837 22563836 + ORSgTEMT01601983 238 0.0014 (4/2900) 0 * Os_TE_54729 Os_TE_54729 Chr9 22563830 22563831 - ORSgTEMT01601834 234 0.0017 (5/2904) 0 * Os_TE_54730 Os_TE_54728 Chr9 22563579 22563580 - MPING 430 0.0003 (1/2960) 0 * Os_TE_54727 Os_TE_54727 Chr9 22563577 22563576 + MPING 430 0.0003 (1/2969) 0 * Os_TE_54728 Os_TE_54726 Chr9 22562992 22562993 + ORSgTEMT00500201 140 0.0017 (5/2969) 0 * Os_TE_54725 Os_TE_54725 Chr9 22562978 22562977 - ORSgTEMT00502257 142 0.0017 (5/2966) 0 * Os_TE_54726 Os_TE_54717 Chr9 22560594 22560595 - ORSiTETNOOT00134 607 0.0003 (1/2924) 0 * Os_TE_54716 Os_TE_54716 Chr9 22560587 22560586 + TWIF 586 0.0003 (1/2932) 0 * Os_TE_54717 Os_TE_54712 Chr9 22559521 22559522 + MPING 430 0.0010 (3/2921) 0 * Os_TE_54711 Os_TE_54711 Chr9 22559519 22559518 - MPING 430 0.0010 (3/2919) 0 * Os_TE_54712 Os_TE_54708 Chr9 22559364 22559363 + ORSiTERTOOT00027 10853 0.0003 (1/2947) 0 * * Os_TE_54693 Chr9 22555812 22555813 + COPI2_LTR 4733 0.0003 (1/2959) 0 * Os_TE_54692 Os_TE_54692 Chr9 22555808 22555807 - COPI2_LTR 4733 0.0003 (1/2964) 0 * Os_TE_54693 Os_TE_54681 Chr9 22553860 22553859 + ORSgTEMT01702250 152 0.0003 (1/2958) 0 * * Os_TE_54674 Chr9 22549488 22549487 + NDNA1TNA_OS 334 0.0007 (2/2982) 0 * Os_TE_54673 Os_TE_54673 Chr9 22549487 22549488 + ORSgTEMT00100272 356 0.0007 (2/2984) 0 * Os_TE_54674 Os_TE_54672 Chr9 22548446 22548447 + COPI2_LTR 4733 0.0020 (6/2989) 0 * Os_TE_54671 Os_TE_54671 Chr9 22548442 22548441 - COPI2_LTR 4733 0.0020 (6/2991) 0 * Os_TE_54672 Os_TE_54670 Chr9 22548277 22548276 - ORSgTEMT01601432 239 0.0003 (1/2974) 0 * Os_TE_54669 Os_TE_54669 Chr9 22548274 22548275 + ORSgTEMT01602181 239 0.0003 (1/2981) 0 * Os_TE_54670 Os_TE_54659 Chr9 22542163 22542162 + ORSgTEMT02400245 225 0.0231 (68/2944) 0 * * Os_TE_54656 Chr9 22541604 22541605 - ORSgTEMT02400179 221 0.0020 (6/2960) 0 * Os_TE_54655 Os_TE_54655 Chr9 22541603 22541602 - TYPEM 227 0.0024 (7/2964) 0 * Os_TE_54656 Os_TE_54641 Chr9 22533077 22533078 + ORSiTERTOOT00296 5553 0.0003 (1/2997) 0 * Os_TE_54640 Os_TE_54640 Chr9 22533073 22533072 - SC-3_LTR 5748 0.0003 (1/2997) 0 * Os_TE_54641 Os_TE_54634 Chr9 22521980 22521981 - SC-8_LTR 4951 0.0003 (1/2980) 0 * Os_TE_54633 Os_TE_54633 Chr9 22521976 22521975 + SC-8_LTR 4951 0.0003 (1/2979) 0 * Os_TE_54634 Os_TE_54618 Chr9 22510677 22510678 - TYPEU1 380 0.0010 (3/2994) 0 * Os_TE_54617 Os_TE_54617 Chr9 22510669 22510668 + TYPEU4 402 0.0010 (3/2993) 0 * Os_TE_54618 Os_TE_54612 Chr9 22504842 22504843 - RIREX_LTR 8828 0.0003 (1/2997) 0 * Os_TE_54611 Os_TE_54611 Chr9 22504838 22504837 + RIREX_LTR 8828 0.0003 (1/2999) 0 * Os_TE_54612 Os_TE_54609 Chr9 22504435 22504436 + TWIFBIG 3567 0.0158 (47/2984) 0 * Os_TE_54608 Os_TE_54608 Chr9 22504428 22504427 - ORSiTETNOOT00216 3569 0.0154 (46/2979) 0 * Os_TE_54609 Os_TE_54598 Chr9 22502808 22503149 + OLO24 345 0.5859 (1367/2333) 1 Intact * Os_TE_54593 Chr9 22501457 22501458 - TYPEU 362 0.0010 (3/2926) 0 * * Os_TE_54585 Chr9 22499688 22499689 + CACTA-J 1159 0.4217 (1125/2668) 0 * Os_TE_54584 Os_TE_54584 Chr9 22499686 22499685 - CACTA-J 1159 0.4189 (1116/2664) 0 * Os_TE_54585 Os_TE_54582 Chr9 22499533 22499534 + RIREX_LTR 8828 0.0004 (1/2802) 0 * Os_TE_54581 Os_TE_54581 Chr9 22499529 22499528 - RIREX_LTR 8828 0.0010 (1/1007) 0 * Os_TE_54582 Os_TE_54580 Chr9 22498945 22498946 + ORSgTETNOOT01686 252 0.5456 (1497/2744) 0 * Os_TE_54579 Os_TE_54579 Chr9 22498943 22498942 - ORSgTETNOOT00591 258 0.5788 (1701/2939) 0 * Os_TE_54580 Os_TE_54578 Chr9 22498916 22498917 - GLUTEL1LIKE 273 0.0742 (102/1374) 0 * * Os_TE_54576 Chr9 22498743 22498882 + ORSgTEMT00500201 140 0.4753 (1279/2691) 1 Intact * Os_TE_54567 Chr9 22497741 22497080 + TWIFB1 3737 0.6319 (843/1334) 1 Intact * Os_TE_54561 Chr9 22496790 22496994 + ORSgTEMT01400032 215 0.4471 (1302/2912) 1 Intact * Os_TE_54560 Chr9 22496777 22496778 + MPING 430 0.0004 (1/2485) 0 * * Os_TE_54554 Chr9 22496179 22495679 + DITAILA 257 0.7786 (1027/1319) 1 Intact * Os_TE_54543 Chr9 22492835 22492834 + RIREX_LTR 8828 0.0039 (5/1278) 0 * * Os_TE_54541 Chr9 22491339 22491340 - MPING 430 0.0008 (1/1314) 0 * Os_TE_54540 Os_TE_54540 Chr9 22491337 22491336 + MPING 430 0.0008 (1/1316) 0 * Os_TE_54541 Os_TE_54520 Chr9 22487149 22487457 - STOWAWAY12_OS 312 0.3858 (1049/2719) 1 Intact * Os_TE_54518 Chr9 22486943 22486942 + CACTA-H 1152 0.0004 (1/2710) 0 * Os_TE_54517 Os_TE_54517 Chr9 22486937 22486938 - SPMLIKE 10989 0.0004 (1/2731) 0 * Os_TE_54518 Os_TE_54515 Chr9 22486725 22486724 - INDITTO 263 0.0636 (163/2562) 0 * * Os_TE_54513 Chr9 22486216 22486217 - INDITTO 263 0.0004 (1/2742) 0 * Os_TE_54512 Os_TE_54512 Chr9 22486202 22486201 + ORSgTEMT01600421 237 0.0025 (7/2748) 0 * Os_TE_54513 Os_TE_54507 Chr9 22482773 22484885 + SEVERIN-2 1952 0.7817 (1293/1654) 1 Intact * Os_TE_54505 Chr9 22482058 22482059 + INDITTO 263 0.0003 (1/2902) 0 * * Os_TE_54504 Chr9 22481408 22470151 - ORSgTETN00200001 10994 0.7518 (936/1245) 1 Intact Os_TE_54493 Os_TE_54493 Chr9 22470149 22481408 + CACTA-B 1103 0.7642 (982/1285) 1 Intact Os_TE_54504 Os_TE_54481 Chr9 22468451 22468450 + ORSgTEMT00901844 250 0.0196 (26/1327) 0 * Os_TE_54480 Os_TE_54480 Chr9 22468447 22468448 - ORSgTEMT00900099 250 0.0318 (42/1321) 0 * Os_TE_54481 Os_TE_54475 Chr9 22467089 22467088 - SZ-35LTR 3853 0.0008 (1/1294) 0 * * Os_TE_54471 Chr9 22464427 22464426 - RIREX_LTR 8828 0.0010 (1/976) 0 * * Os_TE_54464 Chr9 22456938 22456939 + OSTONOR1_LTR 6440 0.0081 (24/2981) 0 * * Os_TE_54463 Chr9 22456897 22456896 + ORSgTEMT01601591 242 0.0007 (2/2930) 0 * Os_TE_54462 Os_TE_54462 Chr9 22456894 22456895 + ORSgTEMT01601591 242 0.0007 (2/2920) 0 * Os_TE_54463 Os_TE_54460 Chr9 22456835 22456572 - STOWAWAY45_OS 266 0.3327 (974/2928) 1 Intact Os_TE_54459 Os_TE_54459 Chr9 22456572 22456835 + STOWAWAY45_OS 266 0.3465 (983/2837) 1 Intact Os_TE_54460 Os_TE_54454 Chr9 22455467 22455468 + STOWAWAY51_OS 246 0.0015 (4/2599) 0 * * Os_TE_54451 Chr9 22453497 22453496 + SINE03_OS 360 0.0038 (10/2658) 0 * * Os_TE_54450 Chr9 22453463 22453464 - LINE-6_OS 4886 0.0150 (40/2660) 0 * * Os_TE_54447 Chr9 22452739 22452740 + ORSiTERTOOT00367 5639 0.0019 (5/2598) 0 * * Os_TE_54445 Chr9 22452715 22452714 - ORSgTEMT01600314 233 0.0031 (8/2580) 0 * * Os_TE_54431 Chr9 22449196 22449197 - COPI2_LTR 4733 0.0007 (2/2877) 0 * Os_TE_54430 Os_TE_54430 Chr9 22449192 22449191 + COPI2_LTR 4733 0.0014 (4/2858) 0 * Os_TE_54431 Os_TE_54428 Chr9 22448880 22448881 - ORSgTEMT00100854 331 0.0016 (4/2533) 0 * * Os_TE_54427 Chr9 22448850 22448849 + STOWAWAY50_OS 174 0.0024 (6/2510) 0 * * Os_TE_54404 Chr9 22446044 22446045 - ORSgTEMT01701624 178 0.0019 (3/1576) 0 * * Os_TE_54401 Chr9 22445690 22445689 - EnSpm-13_OS 11171 0.0006 (1/1585) 0 * * Os_TE_54400 Chr9 22444775 22444776 - RIREX_LTR 8828 0.0006 (1/1578) 0 * * Os_TE_54399 Chr9 22444767 22444766 + NDNA1TNA_OS 334 0.0142 (23/1624) 0 * * Os_TE_54396 Chr9 22444291 22444290 + MuDR2_OS 6770 0.0006 (1/1590) 0 * * Os_TE_54390 Chr9 22443125 22443126 + ORSgTETNOOT02316 263 0.0008 (1/1245) 0 * Os_TE_54389 Os_TE_54389 Chr9 22443123 22443122 - INDITTO 263 0.0008 (1/1241) 0 * Os_TE_54390 Os_TE_54383 Chr9 22442594 22442356 + TREP215 239 0.7998 (911/1139) 1 Intact Os_TE_54380 Os_TE_54380 Chr9 22442356 22442592 - ORSgTEMT01601493 303 0.8165 (1010/1237) 1 Intact Os_TE_54383 Os_TE_54377 Chr9 22441918 22441917 - RETROSAT4_LTR 13504 0.1350 (168/1244) 0 * * Os_TE_54371 Chr9 22441238 22441239 + ORSgTETNOOT00670 249 0.0024 (5/2053) 0 * * Os_TE_54370 Chr9 22441183 22440941 + ORSgTEMT01601591 242 0.3558 (703/1976) -1 Intact Os_TE_54369 Os_TE_54369 Chr9 22440938 22441183 + STOWAWAY51_OS 246 0.7961 (867/1089) 1 Intact Os_TE_54370 Os_TE_54367 Chr9 22439878 22439877 - ORSgTEMT01601768 238 0.0086 (11/1278) 0 * Os_TE_54366 Os_TE_54366 Chr9 22439875 22439876 + ORSgTEMT01602181 239 0.0071 (9/1276) 0 * Os_TE_54367 Os_TE_54362 Chr9 22437596 22437595 - CACTA-Q 2268 0.0039 (5/1280) 0 * * Os_TE_54361 Chr9 22437229 22437230 - CACTA-Q 2268 0.0040 (5/1255) 0 * * Os_TE_54360 Chr9 22436953 22436954 - RIREX_LTR 8828 0.0008 (1/1255) 0 * Os_TE_54359 Os_TE_54359 Chr9 22436949 22436948 + RIREX_LTR 8828 0.0008 (1/1253) 0 * Os_TE_54360 Os_TE_54340 Chr9 22432795 22432794 - RETROSAT4_LTR 13504 0.0019 (5/2658) 0 * * Os_TE_54337 Chr9 22431106 22431107 + ORSgTEMT01602181 239 0.0004 (1/2573) 0 * * Os_TE_54328 Chr9 22427570 22427569 - STOWAWAY51_OS 246 0.0024 (6/2532) 0 * * Os_TE_54322 Chr9 22425251 22425252 - MERMITE18B 1306 0.0056 (15/2658) 0 * Os_TE_54321 Os_TE_54321 Chr9 22425245 22425244 + MERMITEB 1610 0.0056 (15/2662) 0 * Os_TE_54322 Os_TE_54305 Chr9 22422354 22422355 - RIRE2_LTR 11306 0.0003 (1/2998) 0 * Os_TE_54304 Os_TE_54304 Chr9 22422350 22422349 + RIRE2_LTR 11306 0.0003 (1/2999) 0 * Os_TE_54305 Os_TE_54300 Chr9 22421940 22421939 + OSTONOR1_LTR 6440 0.0003 (1/2996) 0 * * Os_TE_54295 Chr9 22420255 22420256 + SEVERIN-2 1952 0.0050 (15/2988) 0 * * Os_TE_54283 Chr9 22416542 22416543 - COPIA2-LTR_OS 6433 0.0010 (3/2935) 0 * * Os_TE_54281 Chr9 22415928 22415929 - ORSgTEMT00600304 361 0.0003 (1/2995) 0 * Os_TE_54280 Os_TE_54280 Chr9 22415925 22415924 - CASTAWAY 364 0.0003 (1/2994) 0 * Os_TE_54281 Os_TE_54278 Chr9 22414953 22414954 + SZ-55_LTR 10318 0.0057 (17/2996) 0 * Os_TE_54277 Os_TE_54277 Chr9 22414949 22414948 - SZ-55_LTR 10318 0.0030 (9/2991) 0 * Os_TE_54278 Os_TE_54276 Chr9 22413830 22413829 - TESS 244 0.0003 (1/2995) 0 * * Os_TE_54268 Chr9 22407857 22407856 + OLO24 345 0.0003 (1/2991) 0 * * Os_TE_54267 Chr9 22407710 22407711 + ORSiTERTOOT00296 5553 0.0003 (1/2995) 0 * Os_TE_54266 Os_TE_54266 Chr9 22407706 22407705 - SC-3_LTR 5748 0.0003 (1/2995) 0 * Os_TE_54267 Os_TE_54250 Chr9 22399335 22399334 - OSTE20 496 0.0037 (11/2983) 0 * * Os_TE_54229 Chr9 22395193 22395194 - RETRO2_LTR 12874 0.0069 (17/2458) 0 * Os_TE_54228 Os_TE_54228 Chr9 22395189 22395188 + RETRO2_LTR 12874 0.0095 (22/2324) 0 * Os_TE_54229 Os_TE_54225 Chr9 22391136 22391135 + ORSgTEMT01601591 242 0.0003 (1/2964) 0 * * Os_TE_54224 Chr9 22391125 22391124 - ORSgTEMT01400006 213 0.0014 (4/2957) 0 * * Os_TE_54220 Chr9 22389938 22389939 - SZ-30_LTR 6377 0.0017 (5/2989) 0 * Os_TE_54219 Os_TE_54219 Chr9 22389934 22389933 + SZ-30_LTR 6377 0.0013 (4/2991) 0 * Os_TE_54220 Os_TE_54206 Chr9 22378233 22378234 + ORSiTERTOOT00381 4988 0.3348 (1001/2990) 0 * * Os_TE_54202 Chr9 22376628 22376485 + ORSgTEMT00500651 144 0.3912 (1162/2970) 1 Intact Os_TE_54201 Os_TE_54201 Chr9 22376479 22376619 - ORSgTEMT00500351 146 0.3941 (1176/2984) 1 Intact Os_TE_54202 Os_TE_54189 Chr9 22374589 22374588 + TELIA 141 0.5756 (1576/2738) 0 * * Os_TE_54187 Chr9 22374346 22374347 + ORSgTEMT01700681 154 0.0017 (5/2880) 0 * * Os_TE_54167 Chr9 22366577 22366576 + SZ-40LTR 2465 0.0006 (1/1686) 0 * * Os_TE_54166 Chr9 22365843 22365844 + STOWAWAY1_OS 149 0.3015 (885/2935) 0 * Os_TE_54165 Os_TE_54165 Chr9 22365842 22365841 - STOWAWAY1_OS 149 0.3037 (880/2898) 0 * Os_TE_54166 Os_TE_54164 Chr9 22365662 22365663 + AMYLTP 383 0.1773 (516/2911) 0 * Os_TE_54163 Os_TE_54163 Chr9 22365654 22365653 - AMYLTP 383 0.1737 (503/2896) 0 * Os_TE_54164 Os_TE_54152 Chr9 22358267 22358268 + ORSgTETNOOT00908 242 0.0019 (4/2108) 0 * * Os_TE_54146 Chr9 22356177 22356178 - ORSgTERT00201216 11284 0.0018 (3/1650) 0 * * Os_TE_54144 Chr9 22355762 22355763 - ORSiTERTOOT00308 5023 0.0005 (1/2192) 0 * Os_TE_54143 Os_TE_54143 Chr9 22355758 22355757 + SC-10_LTR 4920 0.0009 (2/2191) 0 * Os_TE_54144 Os_TE_54142 Chr9 22355685 22355686 + ORSgTETNOOT00908 242 0.0005 (1/2185) 0 * * Os_TE_54121 Chr9 22351649 22351650 - NDNA1TNA_OS 334 0.0040 (12/2986) 0 * * Os_TE_54120 Chr9 22351566 22351567 + COPIA2-LTR_OS 6433 0.0007 (2/2973) 0 * Os_TE_54119 Os_TE_54119 Chr9 22351562 22351561 - COPIA2-LTR_OS 6433 0.0007 (2/2989) 0 * Os_TE_54120 Os_TE_54117 Chr9 22348589 22348590 + RIREX_LTR 8828 0.0003 (1/2992) 0 * Os_TE_54116 Os_TE_54116 Chr9 22348585 22348584 - RIREX_LTR 8828 0.0003 (1/2994) 0 * Os_TE_54117 Os_TE_54087 Chr9 22329737 22329738 - ORSgTEMT00900760 239 0.0020 (5/2545) 0 * * Os_TE_54086 Chr9 22329296 22329295 + ORSgTEMT01600628 237 0.2359 (701/2971) 0 * * Os_TE_54085 Chr9 22327702 22327703 + OSR3_LTR 5201 0.0037 (11/2992) 0 * * Os_TE_54079 Chr9 22325816 22324230 + MERMITEB 1610 0.5348 (1560/2917) 1 Intact Os_TE_54074 Os_TE_54074 Chr9 22324229 22325816 + MERMITE18B 1306 0.5438 (1607/2955) 1 Intact Os_TE_54079 Os_TE_54071 Chr9 22323577 22323576 - TRUNCATOR 2918 0.1242 (329/2648) 0 * * Os_TE_54062 Chr9 22319762 22319763 + COPIA2-LTR_OS 6433 0.0018 (3/1708) 0 * Os_TE_54061 Os_TE_54061 Chr9 22319758 22319757 - COPIA2-LTR_OS 6433 0.0029 (5/1708) 0 * Os_TE_54062 Os_TE_54060 Chr9 22318707 22318708 + RIREX_LTR 8828 0.1792 (535/2985) 0 * Os_TE_54059 Os_TE_54059 Chr9 22318704 22318703 - RIREX_LTR 8828 0.1779 (531/2985) 0 * Os_TE_54060 Os_TE_54050 Chr9 22315692 22315693 + ORSgTEMT01601122 212 0.2499 (543/2173) 0 * * Os_TE_54040 Chr9 22312539 22312540 + RIREX_LTR 8828 0.0017 (5/2864) 0 * * Os_TE_54033 Chr9 22311316 22311317 - COPI2_LTR 4733 0.0003 (1/2887) 0 * * Os_TE_54031 Chr9 22311279 22310987 - STOLAB 312 0.5472 (1624/2968) 1 Intact Os_TE_54030 Os_TE_54030 Chr9 22310983 22311274 - STOLAB 312 0.6934 (1608/2319) 1 Intact Os_TE_54031 Os_TE_54029 Chr9 22310774 22310773 - CASTAWAY 364 0.2270 (664/2925) 0 * * Os_TE_54026 Chr9 22310572 22310573 - SZ-35LTR 3853 0.1885 (542/2875) 0 * * Os_TE_54019 Chr9 22308966 22308967 + INDITTO 263 0.0041 (10/2426) 0 * * Os_TE_54017 Chr9 22308800 22308801 - MUDRN3_OS 903 0.0068 (20/2945) 0 * Os_TE_54016 Os_TE_54016 Chr9 22308792 22308791 - MUDRN3_OS 903 0.0078 (23/2957) 0 * Os_TE_54017 Os_TE_54015 Chr9 22307819 22307820 - COPIA2-LTR_OS 6433 0.0003 (1/2973) 0 * Os_TE_54014 Os_TE_54014 Chr9 22307815 22307814 + COPIA2-LTR_OS 6433 0.0003 (1/2974) 0 * Os_TE_54015 Os_TE_54013 Chr9 22307264 22307263 - TYPEU 362 0.0031 (9/2907) 0 * * Os_TE_54003 Chr9 22303657 22303658 + ORSgTEMT01602181 239 0.2113 (612/2897) 0 * * Os_TE_53998 Chr9 22303027 22303026 + NDNA1TNA_OS 334 0.0010 (3/2924) 0 * * Os_TE_53995 Chr9 22302008 22302009 - RIRE2_LTR 11306 0.0003 (1/2936) 0 * Os_TE_53994 Os_TE_53994 Chr9 22302004 22302003 + RIRE2_LTR 11306 0.0003 (1/2941) 0 * Os_TE_53995 Os_TE_53983 Chr9 22297182 22297183 + RETROSAT4_LTR 13504 0.0249 (59/2365) 0 * Os_TE_53982 Os_TE_53982 Chr9 22297178 22297177 - RETROSAT4_LTR 13504 0.0210 (59/2813) 0 * Os_TE_53983 Os_TE_53979 Chr9 22296180 22296181 - TYPEU1 380 0.2169 (581/2679) 0 * Os_TE_53978 Os_TE_53978 Chr9 22296172 22296171 + TYPEU4 402 0.2008 (523/2605) 0 * Os_TE_53979 Os_TE_53977 Chr9 22295968 22295969 - RIREX_LTR 8828 0.0014 (4/2767) 0 * Os_TE_53976 Os_TE_53976 Chr9 22295964 22295963 + RIREX_LTR 8828 0.0021 (4/1919) 0 * Os_TE_53977 Os_TE_53958 Chr9 22284536 22284535 + STOWAWAY50_OS 174 0.5583 (1556/2787) 0 * * Os_TE_53957 Chr9 22283496 22283495 - RIRE2_LTR 11306 0.0121 (36/2970) 0 * * Os_TE_53940 Chr9 22268047 22268046 - GAIJIN 147 0.0465 (139/2991) 0 * Os_TE_53939 Os_TE_53939 Chr9 22268046 22268047 + ORSgTEMT00500512 153 0.0461 (138/2994) 0 * Os_TE_53940 Os_TE_53933 Chr9 22262193 22262192 + EXPLORER 210 0.0007 (2/2991) 0 * * Os_TE_53931 Chr9 22259875 22259874 - ORSgTEMT01700507 154 0.0457 (137/2995) 0 * Os_TE_53930 Os_TE_53930 Chr9 22259855 22259856 + STOWAWAY1_OS 149 0.0461 (138/2994) 0 * Os_TE_53931 Os_TE_53926 Chr9 22254798 22254797 - ORSiTETNOOT00169 3649 0.0003 (1/2996) 0 * * Os_TE_53925 Chr9 22254686 22254687 + MPING 430 0.0003 (1/2995) 0 * Os_TE_53924 Os_TE_53924 Chr9 22254684 22254683 - MPING 430 0.0003 (1/2995) 0 * Os_TE_53925 Os_TE_53913 Chr9 22247457 22247458 + ORSgTEMT00500852 140 0.5807 (1738/2993) 0 * * Os_TE_53899 Chr9 22239354 22239355 + MERMITEJ 1498 0.1345 (401/2981) 0 * * Os_TE_53898 Chr9 22239003 22239004 - COWARD 200 0.1539 (460/2989) 0 * * Os_TE_53894 Chr9 22236972 22236627 + OLO24 345 0.8356 (2313/2768) 1 Intact * Os_TE_53888 Chr9 22236404 22236405 - RIREX_LTR 8828 0.0027 (8/2918) 0 * Os_TE_53887 Os_TE_53887 Chr9 22236400 22236399 + RIREX_LTR 8828 0.0027 (8/2912) 0 * Os_TE_53888 Os_TE_53886 Chr9 22236261 22236262 + RIREX_LTR 8828 0.0017 (5/2973) 0 * * Os_TE_53883 Chr9 22234372 22234371 + OLO24 345 0.0088 (26/2956) 0 * * Os_TE_53878 Chr9 22230478 22230477 + ORSgTEMT01601525 239 0.0017 (5/2995) 0 * * Os_TE_53877 Chr9 22230471 22230470 + ORSgTEMT01601571 232 0.0020 (6/2993) 0 * * Os_TE_53876 Chr9 22230099 22230100 - ENSPM4_OS 11610 0.0020 (6/2996) 0 * * Os_TE_53874 Chr9 22229572 22229573 + OSTE15 1168 0.0060 (18/2994) 0 * Os_TE_53873 Os_TE_53873 Chr9 22229571 22229570 + OSTE15 1168 0.0053 (16/2991) 0 * Os_TE_53874 Os_TE_53872 Chr9 22229130 22229129 - OSLINE1-3 6101 0.0481 (144/2995) 0 * * Os_TE_53871 Chr9 22228677 22228678 + SZ-4_LTR 5991 0.0007 (2/2926) 0 * Os_TE_53870 Os_TE_53870 Chr9 22228673 22228672 - SZ-4_LTR 5991 0.0007 (2/2979) 0 * Os_TE_53871 Os_TE_53868 Chr9 22228571 22228572 + MDR2 6967 0.0091 (27/2969) 0 * * Os_TE_53849 Chr9 22226687 22226688 + TELIA 141 0.0003 (1/2925) 0 * Os_TE_53848 Os_TE_53848 Chr9 22226679 22226678 - TELIA 141 0.0003 (1/2938) 0 * Os_TE_53849 Os_TE_53847 Chr9 22226067 22226068 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_53846 Os_TE_53846 Chr9 22226063 22226062 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_53847 Os_TE_53843 Chr9 22225227 22225228 - COPIA2-LTR_OS 6433 0.0003 (1/2919) 0 * Os_TE_53842 Os_TE_53842 Chr9 22225223 22225222 + COPIA2-LTR_OS 6433 0.0003 (1/2982) 0 * Os_TE_53843 Os_TE_53839 Chr9 22223908 22223907 - TYPEU 362 0.0487 (146/2995) 0 * * Os_TE_53836 Chr9 22222361 22222360 + ORSgTEMT00300069 394 0.0089 (26/2927) 0 * * Os_TE_53818 Chr9 22211414 22211413 + ORSgTEMT00101674 340 0.0023 (7/2990) 0 * Os_TE_53817 Os_TE_53817 Chr9 22211413 22211414 + NDNA1TNA_OS 334 0.0030 (9/2999) 0 * Os_TE_53818 Os_TE_53791 Chr9 22204726 22204725 - ORSgTEMT01602413 239 0.0017 (5/2971) 0 * * Os_TE_53788 Chr9 22203291 22203290 - ORSiTERTOOT00367 5639 0.0003 (1/2997) 0 * * Os_TE_53787 Chr9 22201483 22201484 + RIRE3A_LTR 10580 0.0010 (1/1002) 0 * * Os_TE_53786 Chr9 22201467 22197263 + ORSiTERTOOT00027 10853 0.3399 (995/2927) 1 Intact * Os_TE_53785 Chr9 22197257 22197258 - ORSgTEMT01601768 238 0.0161 (48/2989) 0 * * Os_TE_53784 Chr9 22197148 22197149 + RIREX_LTR 8828 0.0007 (2/2994) 0 * Os_TE_53783 Os_TE_53783 Chr9 22197144 22197143 - RIREX_LTR 8828 0.0007 (2/2996) 0 * Os_TE_53784 Os_TE_53778 Chr9 22190805 22190806 + COPI2_LTR 4733 0.0003 (1/2988) 0 * Os_TE_53777 Os_TE_53777 Chr9 22190801 22190800 - COPI2_LTR 4733 0.0003 (1/2985) 0 * Os_TE_53778 Os_TE_53775 Chr9 22187832 22187833 + CASTAWAY 364 0.0010 (3/2959) 0 * Os_TE_53774 Os_TE_53774 Chr9 22187830 22187829 - ORSgTEMT00600085 364 0.0010 (3/2957) 0 * Os_TE_53775 Os_TE_53773 Chr9 22187639 22187640 + ORSgTEMT00900266 245 0.0127 (38/2986) 0 * * Os_TE_53772 Chr9 22187313 22187314 + DASIA-2 1198 0.0004 (1/2833) 0 * Os_TE_53771 Os_TE_53771 Chr9 22187305 22187304 + DASIA-2 1198 0.0004 (1/2849) 0 * Os_TE_53772 Os_TE_53769 Chr9 22187181 22187180 - ORSgTEMT00500753 148 0.0129 (37/2878) 0 * * Os_TE_53767 Chr9 22186666 22186667 + ORSgTETNOOT01219 231 0.0010 (3/2919) 0 * Os_TE_53766 Os_TE_53766 Chr9 22186662 22186661 - NDNA1TNA_OS 334 0.0081 (24/2953) 0 * Os_TE_53767 Os_TE_53765 Chr9 22186477 22186478 - RIREX_LTR 8828 0.0003 (1/2990) 0 * Os_TE_53764 Os_TE_53764 Chr9 22186473 22186472 + RIREX_LTR 8828 0.0003 (1/2991) 0 * Os_TE_53765 Os_TE_53755 Chr9 22185911 22185910 + ORSgTEMT01601591 242 0.0007 (2/2991) 0 * Os_TE_53754 Os_TE_53754 Chr9 22185908 22185909 + ORSgTEMT01601591 242 0.0007 (2/2993) 0 * Os_TE_53755 Os_TE_53751 Chr9 22185215 22185216 + HARB-1_OS 5166 0.0003 (1/2991) 0 * Os_TE_53750 Os_TE_53750 Chr9 22185213 22185212 - HARB-1_OS 5166 0.0003 (1/2988) 0 * Os_TE_53751 Os_TE_53734 Chr9 22172443 22172444 - TEMPINDAS 4259 0.0003 (1/2998) 0 * * Os_TE_53724 Chr9 22167035 22167036 - Cassandra_OS-LTR 764 0.0010 (3/2924) 0 * * Os_TE_53721 Chr9 22165858 22165859 - MuDR4_OS 7610 0.6312 (1869/2961) 0 * Os_TE_53720 Os_TE_53720 Chr9 22165851 22165850 - MuDR4_OS 7610 0.4450 (906/2036) 0 * Os_TE_53721 Os_TE_53695 Chr9 22148683 22148682 - ORSiTERT00100077 4724 0.0476 (142/2985) 0 * * Os_TE_53683 Chr9 22143547 22143546 - SZ-35LTR 3853 0.0012 (2/1677) 0 * * Os_TE_53678 Chr9 22142404 22142403 - RETROSAT3_LTR 11537 0.0840 (147/1749) 0 * * Os_TE_53671 Chr9 22138381 22138380 + ORSgTETNOOT00032 218 0.0003 (1/2958) 0 * * Os_TE_53659 Chr9 22129232 22129233 + ORSgTEMT01700514 156 0.0017 (5/2990) 0 * * Os_TE_53653 Chr9 22128969 22129141 + ORSgTEMT01701432 152 0.8975 (1129/1258) 1 Intact * Os_TE_53648 Chr9 22126192 22126193 + SZ-48LTR 3632 0.0003 (1/2988) 0 * * Os_TE_53647 Chr9 22123728 22123729 - ORSiTETNOOT00134 607 0.0004 (1/2566) 0 * * Os_TE_53646 Chr9 22123473 22123472 - ORSgTEMT00901723 248 0.0018 (5/2757) 0 * Os_TE_53645 Os_TE_53645 Chr9 22123469 22123470 - ORSgTEMT00901269 237 0.0018 (5/2730) 0 * Os_TE_53646 Os_TE_53644 Chr9 22123414 22123413 + STOWAWAY13_OS 251 0.6593 (1823/2765) 0 * * Os_TE_53640 Chr9 22121669 22121668 - STOWAWAY10_OS 259 0.0010 (3/2971) 0 * * Os_TE_53626 Chr9 22111846 22111847 + ORSgTETNOOT00908 242 0.0017 (5/2978) 0 * Os_TE_53625 Os_TE_53625 Chr9 22111845 22111844 - ORSgTETNOOT00823 234 0.0017 (5/2982) 0 * Os_TE_53626 Os_TE_53622 Chr9 22107605 22107606 - TYPEM 227 0.0060 (18/2990) 0 * * Os_TE_53620 Chr9 22104365 22104366 - OLO24 345 0.0003 (1/2981) 0 * Os_TE_53619 Os_TE_53619 Chr9 22104363 22104362 + OLO24 345 0.0003 (1/2979) 0 * Os_TE_53620 Os_TE_53612 Chr9 22102078 22102079 + ORSiTERTOOT00381 4988 0.0003 (1/2976) 0 * Os_TE_53611 Os_TE_53611 Chr9 22102074 22102073 - SC-8_LTR 4951 0.0003 (1/2986) 0 * Os_TE_53612 Os_TE_53610 Chr9 22101889 22101888 + STOWAWAY51_OS 246 0.0114 (34/2978) 0 * Os_TE_53609 Os_TE_53609 Chr9 22101883 22101884 - STOWAWAY51_OS 246 0.0114 (34/2976) 0 * Os_TE_53610 Os_TE_53605 Chr9 22100886 22100887 + SC-8_LTR 4951 0.0007 (2/2985) 0 * Os_TE_53604 Os_TE_53604 Chr9 22100882 22100881 - SC-8_LTR 4951 0.0003 (1/2987) 0 * Os_TE_53605 Os_TE_53596 Chr9 22097785 22097786 + STOWAWAY49_OS 241 0.0035 (10/2888) 0 * * Os_TE_53595 Chr9 22097649 22097650 + RETRO2_LTR 12874 0.0265 (44/1658) 0 * Os_TE_53594 Os_TE_53594 Chr9 22097645 22097644 - RETRO2_LTR 12874 0.0260 (43/1656) 0 * Os_TE_53595 Os_TE_53591 Chr9 22091130 22091131 + RIREX_LTR 8828 0.0003 (1/2985) 0 * Os_TE_53590 Os_TE_53590 Chr9 22091126 22091125 - RIREX_LTR 8828 0.0003 (1/2984) 0 * Os_TE_53591 Os_TE_53582 Chr9 22089695 22089694 - SEVERIN-2 1952 0.0017 (5/2989) 0 * * Os_TE_53581 Chr9 22089098 22089099 - HARB-1_OS 5166 0.0003 (1/2968) 0 * Os_TE_53580 Os_TE_53580 Chr9 22089096 22089095 + HARB-1_OS 5166 0.0003 (1/2975) 0 * Os_TE_53581 Os_TE_53560 Chr9 22085091 22085092 - COPI2_LTR 4733 0.0003 (1/2969) 0 * * Os_TE_53554 Chr9 22081715 22081716 + ORSgTETNOOT01668 244 0.0003 (1/2989) 0 * * Os_TE_53553 Chr9 22081669 22081670 - RIRE2_LTR 11306 0.0003 (1/2993) 0 * * Os_TE_53551 Chr9 22080792 22080793 - RIRE2_LTR 11306 0.0037 (11/2996) 0 * Os_TE_53550 Os_TE_53550 Chr9 22080788 22080787 - ORSgTERT00201216 11284 0.0037 (11/2996) 0 * Os_TE_53551 Os_TE_53549 Chr9 22080256 22080255 - HATOS1 3488 0.0645 (193/2992) 0 * * Os_TE_53548 Chr9 22080202 22080203 - RIRE2_LTR 11306 0.0040 (12/2973) 0 * Os_TE_53547 Os_TE_53547 Chr9 22080198 22080197 + RIREX_LTR 8828 0.0037 (11/2974) 0 * Os_TE_53548 Os_TE_53537 Chr9 22078453 22078452 + RETRO2_LTR 12874 0.1528 (420/2748) 0 * * Os_TE_53536 Chr9 22078049 22078050 + SEVERIN-2 1952 0.1087 (302/2778) 0 * * Os_TE_53533 Chr9 22077352 22077353 - RIREX_LTR 8828 0.0003 (1/2971) 0 * Os_TE_53532 Os_TE_53532 Chr9 22077348 22077347 + RIREX_LTR 8828 0.0003 (1/2998) 0 * Os_TE_53533 Os_TE_53527 Chr9 22076794 22076795 + SZ-55_LTR 10318 0.0003 (1/2983) 0 * Os_TE_53526 Os_TE_53526 Chr9 22076790 22076789 - SZ-55_LTR 10318 0.0003 (1/2974) 0 * Os_TE_53527 Os_TE_53523 Chr9 22075722 22075723 + ORSgTETNOOT00908 242 0.0127 (38/2993) 0 * Os_TE_53522 Os_TE_53522 Chr9 22075720 22075719 + ORSgTETNOOT02019 240 0.0127 (38/2989) 0 * Os_TE_53523 Os_TE_53521 Chr9 22075184 22075185 - COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_53520 Os_TE_53520 Chr9 22075180 22075179 + COPI2_LTR 4733 0.0003 (1/2993) 0 * Os_TE_53521 Os_TE_53516 Chr9 22071673 22071674 + EnSpm-13_OS 11171 0.0003 (1/2960) 0 * Os_TE_53515 Os_TE_53515 Chr9 22071671 22071670 - EnSpm-13_OS 11171 0.0003 (1/2966) 0 * Os_TE_53516 Os_TE_53505 Chr9 22066086 22066087 + MPING 430 0.0003 (1/2984) 0 * Os_TE_53504 Os_TE_53504 Chr9 22066084 22066083 - MPING 430 0.0003 (1/2977) 0 * Os_TE_53505 Os_TE_53503 Chr9 22064201 22064202 - HARB-1_OS 5166 0.0003 (1/2992) 0 * * Os_TE_53499 Chr9 22063337 22063338 - COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_53498 Os_TE_53498 Chr9 22063333 22063332 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_53499 Os_TE_53485 Chr9 22059632 22059633 + ORSgTETNOOT00908 242 0.0037 (11/2999) 0 * Os_TE_53484 Os_TE_53484 Chr9 22059624 22059623 + ORSgTETNOOT01219 231 0.0037 (11/2999) 0 * Os_TE_53485 Os_TE_53483 Chr9 22058515 22058516 + COPIA2-LTR_OS 6433 0.0004 (1/2837) 0 * Os_TE_53482 Os_TE_53482 Chr9 22058511 22058510 - COPIA2-LTR_OS 6433 0.0004 (1/2831) 0 * Os_TE_53483 Os_TE_53477 Chr9 22050734 22050733 + ORSgTEMT00100082 353 0.0010 (3/2992) 0 * * Os_TE_53469 Chr9 22048193 22048194 + AMYLTP 383 0.0027 (8/2994) 0 * Os_TE_53468 Os_TE_53468 Chr9 22048185 22048184 - AMYLTP 383 0.0030 (9/2995) 0 * Os_TE_53469 Os_TE_53464 Chr9 22047221 22047220 + STOWAWAY44_OS 240 0.0262 (77/2942) 0 * * Os_TE_53403 Chr9 22017122 22017123 - NDNA1TNA_OS 334 0.0223 (65/2915) 0 * Os_TE_53402 Os_TE_53402 Chr9 22017119 22017118 + NDNA1TNA_OS 334 0.0254 (74/2910) 0 * Os_TE_53403 Os_TE_53400 Chr9 22016811 22016812 + SZ-62LTR 3649 0.0024 (7/2917) 0 * Os_TE_53399 Os_TE_53399 Chr9 22016807 22016806 - SZ-62LTR 3649 0.0024 (7/2922) 0 * Os_TE_53400 Os_TE_53365 Chr9 22005771 22005772 - SZ-10LTR 1412 0.6596 (1973/2991) 0 * Os_TE_53364 Os_TE_53364 Chr9 22005767 22005766 - ORSiTERTOOT00271 11428 0.6282 (1762/2805) 0 * Os_TE_53365 Os_TE_53363 Chr9 22005572 22005573 + RETROSAT4_LTR 13504 0.6087 (1814/2980) 0 * Os_TE_53362 Os_TE_53362 Chr9 22005568 22005567 - SZ-35LTR 3853 0.6037 (1764/2922) 0 * Os_TE_53363 Os_TE_53341 Chr9 21983705 21983706 - ORSgTETN00200001 10994 0.0010 (3/2934) 0 * Os_TE_53340 Os_TE_53340 Chr9 21983703 21983702 + SPMLIKE 10989 0.0020 (6/2930) 0 * Os_TE_53341 Os_TE_53329 Chr9 21981912 21981911 - RIRE2_LTR 11306 0.0003 (1/2989) 0 * Os_TE_53328 Os_TE_53328 Chr9 21981911 21981912 - ORSgTERT00201216 11284 0.0003 (1/2989) 0 * Os_TE_53329 Os_TE_53288 Chr9 21974392 21974393 - RIRE5-LTR_OS 6427 0.6058 (1810/2988) 0 * Os_TE_53287 Os_TE_53287 Chr9 21974385 21974384 + RIRE5-LTR_OS 6427 0.5899 (1719/2914) 0 * Os_TE_53288 Os_TE_53272 Chr9 21968700 21968701 + SZ-67LTR 1540 0.0380 (111/2922) 0 * * Os_TE_53258 Chr9 21963739 21963740 + COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_53257 Os_TE_53257 Chr9 21963735 21963734 - COPI2_LTR 4733 0.0003 (1/2991) 0 * Os_TE_53258 Os_TE_53256 Chr9 21963041 21963040 - SZ-25LTR 330 0.6645 (1983/2984) 0 * * Os_TE_53255 Chr9 21963035 21963036 + COPI1_LTR 4721 0.6616 (1965/2970) 0 * Os_TE_53254 Os_TE_53254 Chr9 21963031 21963030 - SZ-25LTR 330 0.6633 (1968/2967) 0 * Os_TE_53255 Os_TE_53253 Chr9 21962798 21962799 + WUWU 113 0.0017 (5/2953) 0 * * Os_TE_53250 Chr9 21962169 21962170 + DS-RICE2N 613 0.6614 (1981/2995) 0 * Os_TE_53249 Os_TE_53249 Chr9 21962166 21962165 - DS-RICE2N 613 0.6588 (1964/2981) 0 * Os_TE_53250 Os_TE_53228 Chr9 21943259 21940671 - MuDR3_OS 8604 0.3310 (981/2964) 1 Intact Os_TE_53226 Os_TE_53226 Chr9 21940667 21943259 + MuDR3_OS 8604 0.3194 (934/2924) 1 Intact Os_TE_53228 Os_TE_53224 Chr9 21936341 21936340 + F569 228 0.0003 (1/2980) 0 * Os_TE_53223 Os_TE_53223 Chr9 21936333 21936334 - F569 228 0.0003 (1/2988) 0 * Os_TE_53224 Os_TE_53211 Chr9 21928897 21928898 - COPIA2-LTR_OS 6433 0.0017 (5/2991) 0 * Os_TE_53210 Os_TE_53210 Chr9 21928893 21928892 + COPIA2-LTR_OS 6433 0.0017 (5/2990) 0 * Os_TE_53211 Os_TE_53191 Chr9 21915487 21915488 - COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * * Os_TE_53173 Chr9 21907351 21907352 + ORSiTERTOOT00296 5553 0.0003 (1/2996) 0 * Os_TE_53172 Os_TE_53172 Chr9 21907347 21907346 - SC-3_LTR 5748 0.0003 (1/2993) 0 * Os_TE_53173 Os_TE_53165 Chr9 21900689 21900690 + RIREX_LTR 8828 0.0007 (2/2994) 0 * Os_TE_53164 Os_TE_53164 Chr9 21900685 21900684 - RIREX_LTR 8828 0.0007 (2/2993) 0 * Os_TE_53165 Os_TE_53162 Chr9 21898171 21898170 + HELITRON3_OS 12693 0.0017 (5/2978) 0 * Os_TE_53161 Os_TE_53161 Chr9 21898170 21898171 - HELITRON3_OS 12693 0.0013 (4/2968) 0 * Os_TE_53162 Os_TE_53157 Chr9 21895473 21895474 + TYPEU4 402 0.0003 (1/2995) 0 * Os_TE_53156 Os_TE_53156 Chr9 21895465 21895464 - TYPEU1 380 0.0003 (1/2993) 0 * Os_TE_53157 Os_TE_53151 Chr9 21894162 21894163 + RETROSAT4_LTR 13504 0.0263 (78/2966) 0 * * Os_TE_53150 Chr9 21893884 21893885 + OLO24 345 0.0014 (4/2945) 0 * * Os_TE_53132 Chr9 21890122 21890123 - RETROSAT4_LTR 13504 0.0076 (8/1048) 0 * Os_TE_53131 Os_TE_53131 Chr9 21890118 21890117 + RETROSAT4_LTR 13504 0.6147 (1715/2790) 0 * Os_TE_53132 Os_TE_53130 Chr9 21889573 21889572 + STOWAWAY51_OS 246 0.0007 (2/2790) 0 * Os_TE_53129 Os_TE_53129 Chr9 21889567 21889568 - STOWAWAY51_OS 246 0.0011 (3/2789) 0 * Os_TE_53130 Os_TE_53128 Chr9 21889323 21889324 + ORSgTEMT00600272 361 0.0007 (2/2900) 0 * Os_TE_53127 Os_TE_53127 Chr9 21889318 21889317 - ORSgTEMT00600478 361 0.0007 (2/2914) 0 * Os_TE_53128 Os_TE_53106 Chr9 21885364 21885365 + INDITTO 263 0.0003 (1/2993) 0 * Os_TE_53105 Os_TE_53105 Chr9 21885362 21885361 - INDITTO 263 0.0003 (1/2980) 0 * Os_TE_53106 Os_TE_53102 Chr9 21882618 21882619 + ORSiTERTOOT00381 4988 0.0007 (2/2986) 0 * * Os_TE_53097 Chr9 21880452 21880451 + CLOUD-7 495 0.0074 (22/2973) 0 * * Os_TE_53086 Chr9 21877034 21877035 + ORSgTETNOOT00908 242 0.0147 (44/2998) 0 * * Os_TE_53083 Chr9 21874028 21874029 - OSTE17 734 0.0003 (1/2988) 0 * * Os_TE_53059 Chr9 21856428 21856183 - ORSgTEMT00901288 246 0.3514 (1005/2860) 1 Intact * Os_TE_53042 Chr9 21853732 21853733 + RETRO2A_LTR 12895 0.0027 (8/2929) 0 * * Os_TE_53040 Chr9 21853044 21853043 + TRUNCATOR 2918 0.0146 (43/2941) 0 * * Os_TE_53039 Chr9 21852649 21852650 - ATLANTYS-LTR_OS 13740 0.6728 (1988/2955) 0 * Os_TE_53038 Os_TE_53038 Chr9 21852645 21852644 + ATLANTYS-LTR_OS 13740 0.6773 (2011/2969) 0 * Os_TE_53039 Os_TE_53033 Chr9 21846304 21846305 - NDNA1TNA_OS 334 0.0013 (4/2980) 0 * Os_TE_53032 Os_TE_53032 Chr9 21846302 21846301 + NDNA1TNA_OS 334 0.0013 (4/2984) 0 * Os_TE_53033 Os_TE_53030 Chr9 21846234 21846233 + COPIA2-LTR_OS 6433 0.0010 (1/1002) 0 * * Os_TE_53026 Chr9 21845338 21845339 + ORSgTETN00100072 209 0.0007 (2/2775) 0 * * Os_TE_52994 Chr9 21834682 21834683 - ORSiTERTOOT00368 5673 0.0003 (1/2994) 0 * * Os_TE_52987 Chr9 21827400 21827399 - GYPSY-A_LTR 8951 0.0003 (1/2984) 0 * * Os_TE_52984 Chr9 21826232 21826233 - TRUNCATOR2_LTR 2904 0.0003 (1/2976) 0 * * Os_TE_52973 Chr9 21819069 21819070 - RETROSAT4_LTR 13504 0.0003 (1/2984) 0 * Os_TE_52972 Os_TE_52972 Chr9 21819065 21819064 + RETROSAT4_LTR 13504 0.0003 (1/2985) 0 * Os_TE_52973 Os_TE_52971 Chr9 21817067 21817068 + RETROSAT4_LTR 13504 0.0212 (63/2975) 0 * Os_TE_52970 Os_TE_52970 Chr9 21817063 21817062 - RETROSAT4_LTR 13504 0.0245 (73/2980) 0 * Os_TE_52971 Os_TE_52951 Chr9 21808699 21808698 - COPI2_LTR 4733 0.0007 (2/2910) 0 * * Os_TE_52948 Chr9 21806917 21806918 - NDNA1TNA_OS 334 0.0157 (46/2925) 0 * * Os_TE_52936 Chr9 21797811 21797810 + ORSgTETNOOT00908 242 0.0003 (1/2927) 0 * * Os_TE_52930 Chr9 21795329 21795330 - MuDR4_OS 7610 0.0003 (1/2995) 0 * Os_TE_52929 Os_TE_52929 Chr9 21795322 21795321 - MuDR4_OS 7610 0.0003 (1/2994) 0 * Os_TE_52930 Os_TE_52926 Chr9 21793513 21793512 - SZ-54_LTR 5203 0.0017 (5/2994) 0 * * Os_TE_52923 Chr9 21792738 21792739 - RIREX_LTR 8828 0.0017 (5/2983) 0 * Os_TE_52922 Os_TE_52922 Chr9 21792734 21792733 + RIREX_LTR 8828 0.0017 (5/2973) 0 * Os_TE_52923 Os_TE_52912 Chr9 21782623 21782624 + NDNA1TNA_OS 334 0.0224 (67/2996) 0 * Os_TE_52911 Os_TE_52911 Chr9 21782621 21782620 - NDNA1TNA_OS 334 0.0224 (67/2996) 0 * Os_TE_52912 Os_TE_52910 Chr9 21781586 21781587 - RETROFIT2_LTR 4774 0.0003 (1/2996) 0 * Os_TE_52909 Os_TE_52909 Chr9 21781582 21781581 + RETROFIT2_LTR 4774 0.0003 (1/2995) 0 * Os_TE_52910 Os_TE_52908 Chr9 21781076 21781077 + OsSN3 183 0.5963 (1786/2995) 0 * * Os_TE_52906 Chr9 21779460 21779459 + OSR3_LTR 5201 0.0003 (1/2997) 0 * * Os_TE_52905 Chr9 21778962 21774891 + SZ-48LTR 3632 0.4222 (1256/2975) 1 Intact Os_TE_52901 Os_TE_52901 Chr9 21774891 21778962 - SZ-48LTR 3632 0.4245 (1256/2959) 1 Intact Os_TE_52905 Os_TE_52900 Chr9 21774179 21774180 - ORSiTERTOOT00350 5275 0.0020 (6/2997) 0 * * Os_TE_52898 Chr9 21773741 21773742 + RIREX_LTR 8828 0.0020 (6/2990) 0 * * Os_TE_52895 Chr9 21772936 21772937 + ORSgTEMT01602181 239 0.5349 (1417/2649) 0 * * Os_TE_52888 Chr9 21765263 21765262 + RIREX_LTR 8828 0.5877 (1759/2993) 0 * * Os_TE_52880 Chr9 21762689 21762690 - COPIA2-LTR_OS 6433 0.0020 (6/2982) 0 * Os_TE_52879 Os_TE_52879 Chr9 21762685 21762684 + COPIA2-LTR_OS 6433 0.0055 (7/1281) 0 * Os_TE_52880 Os_TE_52877 Chr9 21761484 21761221 - STOWAWAY45_OS 266 0.4028 (1197/2972) 1 Intact Os_TE_52876 Os_TE_52876 Chr9 21761221 21761484 + STOWAWAY45_OS 266 0.4182 (1183/2829) 1 Intact Os_TE_52877 Os_TE_52873 Chr9 21761116 21761117 - RIRE2_LTR 11306 0.0020 (5/2512) 0 * Os_TE_52872 Os_TE_52872 Chr9 21761112 21761111 + RIREX_LTR 8828 0.0017 (5/2965) 0 * Os_TE_52873 Os_TE_52871 Chr9 21761048 21761049 + ORSgTETNOOT00908 242 0.5916 (1753/2963) 0 * * Os_TE_52863 Chr9 21756986 21756987 - OLO24 345 0.0003 (1/2908) 0 * Os_TE_52862 Os_TE_52862 Chr9 21756984 21756983 + OLO24 345 0.0003 (1/2911) 0 * Os_TE_52863 Os_TE_52855 Chr9 21751698 21751527 - CASINE 174 0.3912 (1167/2983) 1 Intact * Os_TE_52838 Chr9 21747810 21747809 - COPIA2-LTR_OS 6433 0.0041 (12/2906) 0 * * Os_TE_52831 Chr9 21742454 21742455 + ORSiTERTOOT00296 5553 0.0030 (9/2995) 0 * Os_TE_52830 Os_TE_52830 Chr9 21742450 21742449 - SC-3_LTR 5748 0.0027 (8/2992) 0 * Os_TE_52831 Os_TE_52828 Chr9 21741034 21741035 - MDR2 6967 0.0003 (1/2991) 0 * Os_TE_52827 Os_TE_52827 Chr9 21741026 21741025 + MDR2 6967 0.0003 (1/2991) 0 * Os_TE_52828 Os_TE_52808 Chr9 21734797 21734796 - STOWAWAY51_OS 246 0.0003 (1/2991) 0 * Os_TE_52807 Os_TE_52807 Chr9 21734794 21734795 - STOWAWAY51_OS 246 0.0003 (1/2990) 0 * Os_TE_52808 Os_TE_52806 Chr9 21734619 21734618 + EXPLORER 210 0.0325 (97/2985) 0 * * Os_TE_52805 Chr9 21734549 21734548 + ORSgTETNOOT00908 242 0.0003 (1/2966) 0 * * Os_TE_52803 Chr9 21733669 21733670 - SC-8_LTR 4951 0.0017 (5/2974) 0 * Os_TE_52802 Os_TE_52802 Chr9 21733665 21733664 + SC-8_LTR 4951 0.0020 (6/2974) 0 * Os_TE_52803 Os_TE_52794 Chr9 21727846 21727845 + ORSgTETNOOT00032 218 0.0007 (2/2996) 0 * * Os_TE_52793 Chr9 21727620 21727619 - ORSgTEMT01400006 213 0.0345 (103/2989) 0 * Os_TE_52792 Os_TE_52792 Chr9 21727619 21727620 + STOWAWAY9_OS 235 0.0309 (92/2980) 0 * Os_TE_52793 Os_TE_52786 Chr9 21726593 21726594 - NDNA1TNA_OS 334 0.0045 (13/2871) 0 * * Os_TE_52783 Chr9 21724215 21724216 - TYPEM 227 0.0003 (1/2984) 0 * Os_TE_52782 Os_TE_52782 Chr9 21724214 21724213 - ORSgTEMT02400179 221 0.0003 (1/2903) 0 * Os_TE_52783 Os_TE_52781 Chr9 21723362 21723363 + RETRO2_LTR 12874 0.6261 (1792/2862) 0 * * Os_TE_52770 Chr9 21721160 21721159 + ORSgTETNOOT00908 242 0.6150 (1775/2886) 0 * * Os_TE_52768 Chr9 21721100 21721099 + ORSgTETNOOT01846 238 0.0003 (1/2889) 0 * * Os_TE_52765 Chr9 21720554 21720553 - COPIA2-LTR_OS 6433 0.0004 (1/2855) 0 * * Os_TE_52764 Chr9 21720378 21720379 + DS-RICE2N 613 0.0018 (5/2820) 0 * Os_TE_52763 Os_TE_52763 Chr9 21720371 21720370 - DS-RICE2N 613 0.0018 (5/2803) 0 * Os_TE_52764 Os_TE_52762 Chr9 21719874 21719875 - ENSPM4_OS 11610 0.0018 (5/2810) 0 * * Os_TE_52759 Chr9 21718093 21718092 + ORSgTERT00200486 3946 0.0007 (2/2802) 0 * * Os_TE_52746 Chr9 21714696 21714398 + ORSgTEMT04300005 293 0.3599 (1079/2998) 1 Intact Os_TE_52745 Os_TE_52745 Chr9 21714404 21714690 - ORSgTEMT04300008 290 0.3611 (1080/2991) 1 Intact Os_TE_52746 Os_TE_52734 Chr9 21713291 21713292 - RETRO1_LTR 8314 0.0003 (1/2955) 0 * Os_TE_52733 Os_TE_52733 Chr9 21713287 21713286 + RETRO1_LTR 8314 0.0003 (1/2947) 0 * Os_TE_52734 Os_TE_52681 Chr9 21697685 21697684 + SC-4_LTR 5218 0.0251 (75/2993) 0 * * Os_TE_52679 Chr9 21696407 21696406 + ORSgTETNOOT00908 242 0.0740 (221/2987) 0 * * Os_TE_52664 Chr9 21683968 21683969 - SC-3_LTR 5748 0.0003 (1/2955) 0 * * Os_TE_52662 Chr9 21682795 21682796 - SC-8_LTR 4951 0.0003 (1/2994) 0 * Os_TE_52661 Os_TE_52661 Chr9 21682791 21682790 + SC-8_LTR 4951 0.0003 (1/2991) 0 * Os_TE_52662 Os_TE_52659 Chr9 21679873 21679874 - COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_52658 Os_TE_52658 Chr9 21679869 21679868 + COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_52659 Os_TE_52655 Chr9 21678789 21678788 + DASIA-2 1198 0.0003 (1/2997) 0 * * Os_TE_52640 Chr9 21675209 21675210 - COPIA2-LTR_OS 6433 0.0013 (4/2973) 0 * Os_TE_52639 Os_TE_52639 Chr9 21675205 21675204 + COPIA2-LTR_OS 6433 0.0013 (4/2972) 0 * Os_TE_52640 Os_TE_52630 Chr9 21668438 21668439 + NDNA1TNA_OS 334 0.0003 (1/2993) 0 * * Os_TE_52610 Chr9 21654780 21654781 + RETROSAT4_LTR 13504 0.0013 (4/2982) 0 * Os_TE_52609 Os_TE_52609 Chr9 21654776 21654775 - RETROSAT4_LTR 13504 0.0020 (6/2975) 0 * Os_TE_52610 Os_TE_52605 Chr9 21652536 21652537 + F569 228 0.0007 (2/2901) 0 * Os_TE_52604 Os_TE_52604 Chr9 21652534 21652533 - F569 228 0.0013 (4/2984) 0 * Os_TE_52605 Os_TE_52602 Chr9 21651048 21649491 + SPMLIKE 10989 0.4373 (1308/2991) 1 Intact Os_TE_52599 Os_TE_52599 Chr9 21649491 21651049 - ORSgTETN00200001 10994 0.3518 (947/2692) 1 Intact Os_TE_52602 Os_TE_52597 Chr9 21647880 21647881 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_52596 Os_TE_52596 Chr9 21647876 21647875 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_52597 Os_TE_52595 Chr9 21647774 21647775 + RIREX_LTR 8828 0.0027 (7/2631) 0 * * Os_TE_52540 Chr9 21639264 21639265 - RIREX_LTR 8828 0.0003 (1/2994) 0 * Os_TE_52539 Os_TE_52539 Chr9 21639260 21639259 + RIREX_LTR 8828 0.0003 (1/2995) 0 * Os_TE_52540 Os_TE_52505 Chr9 21626833 21626834 + RETROSAT4_LTR 13504 0.0033 (9/2765) 0 * * Os_TE_52496 Chr9 21624318 21624317 - NDNA1TNA_OS 334 0.0682 (203/2978) 0 * Os_TE_52495 Os_TE_52495 Chr9 21624310 21624311 + NDNA1TNA_OS 334 0.0685 (204/2977) 0 * Os_TE_52496 Os_TE_52475 Chr9 21617923 21617924 - RIRE2_LTR 11306 0.0003 (1/2941) 0 * * Os_TE_52448 Chr9 21614144 21614145 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_52447 Os_TE_52447 Chr9 21614140 21614139 - COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_52448 Os_TE_52446 Chr9 21612075 21612076 + OLO24 345 0.0007 (2/2988) 0 * Os_TE_52445 Os_TE_52445 Chr9 21612073 21612072 - OLO24 345 0.0007 (2/2982) 0 * Os_TE_52446 Os_TE_52444 Chr9 21610188 21610187 + ORSiTERTOOT00167 1524 0.0007 (2/2996) 0 * * Os_TE_52442 Chr9 21608551 21608552 - STOWAWAY51_OS 246 0.0007 (2/2995) 0 * * Os_TE_52436 Chr9 21604534 21604535 + ORSiTERTOOT00333 4719 0.0003 (1/2993) 0 * * Os_TE_52434 Chr9 21603954 21603955 + SC-7_LTR 4431 0.0003 (1/2997) 0 * Os_TE_52433 Os_TE_52433 Chr9 21603950 21603949 - SC-7_LTR 4431 0.0003 (1/2996) 0 * Os_TE_52434 Os_TE_52426 Chr9 21601012 21601011 - TYPEM 227 0.0007 (2/2983) 0 * * Os_TE_52422 Chr9 21600607 21600608 - ORSiTERTOOT00402 2660 0.0007 (2/2993) 0 * Os_TE_52421 Os_TE_52421 Chr9 21600603 21600602 + ORSiTERTOOT00402 2660 0.0007 (2/2997) 0 * Os_TE_52422 Os_TE_52416 Chr9 21599543 21599542 + OSR3_LTR 5201 0.0003 (1/2997) 0 * Os_TE_52415 Os_TE_52415 Chr9 21599542 21599543 - OSR3_LTR 5201 0.0003 (1/2999) 0 * Os_TE_52416 Os_TE_52413 Chr9 21599061 21599062 - ORSiTERTOOT00402 2660 0.0003 (1/2999) 0 * Os_TE_52412 Os_TE_52412 Chr9 21599057 21599056 + ORSiTERTOOT00402 2660 0.0004 (1/2821) 0 * Os_TE_52413 Os_TE_52402 Chr9 21594852 21594853 + ORSiTERTOOT00296 5553 0.0007 (2/2998) 0 * Os_TE_52401 Os_TE_52401 Chr9 21594848 21594847 - SC-3_LTR 5748 0.0007 (2/2995) 0 * Os_TE_52402 Os_TE_52395 Chr9 21589483 21589484 + ORSiTERTOOT00296 5553 0.0050 (15/2984) 0 * Os_TE_52394 Os_TE_52394 Chr9 21589479 21589478 - SC-3_LTR 5748 0.0047 (14/2986) 0 * Os_TE_52395 Os_TE_52374 Chr9 21580519 21580520 - SC-8_LTR 4951 0.0017 (5/2995) 0 * Os_TE_52373 Os_TE_52373 Chr9 21580515 21580514 + ORSiTERTOOT00381 4988 0.0017 (5/2995) 0 * Os_TE_52374 Os_TE_52364 Chr9 21575857 21575858 - COPIA2-LTR_OS 6433 0.0010 (3/2994) 0 * Os_TE_52363 Os_TE_52363 Chr9 21575853 21575852 + COPIA2-LTR_OS 6433 0.0010 (3/2997) 0 * Os_TE_52364 Os_TE_52362 Chr9 21575790 21575791 - COPI2_LTR 4733 0.0003 (1/2997) 0 * Os_TE_52361 Os_TE_52361 Chr9 21575786 21575785 + COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_52362 Os_TE_52327 Chr9 21559509 21559508 + SZ-4_LTR 5991 0.0004 (1/2559) 0 * * Os_TE_52326 Chr9 21559099 21559100 + TWIFB1 3737 0.0004 (1/2515) 0 * * Os_TE_52312 Chr9 21548917 21548916 + MUDRN2_OS 756 0.0436 (129/2961) 0 * * Os_TE_52271 Chr9 21533904 21533903 - NDNA2TNA_OS 346 0.0010 (3/2981) 0 * * Os_TE_52270 Chr9 21533667 21533668 + COPI2_LTR 4733 0.0037 (11/2981) 0 * Os_TE_52269 Os_TE_52269 Chr9 21533663 21533662 - COPI2_LTR 4733 0.0034 (10/2976) 0 * Os_TE_52270 Os_TE_52259 Chr9 21532981 21532982 - TYPEM 227 0.0017 (5/2994) 0 * Os_TE_52258 Os_TE_52258 Chr9 21532980 21532979 - ORSgTEMT02400179 221 0.0017 (5/2989) 0 * Os_TE_52259 Os_TE_52230 Chr9 21519777 21524112 + SZ-67LTR 1540 0.7795 (2308/2961) 1 Intact * Os_TE_52228 Chr9 21519753 21519752 + TELIA 141 0.0019 (5/2667) 0 * * Os_TE_52205 Chr9 21508606 21508605 - GYPSO_LTR 9828 0.0003 (1/2990) 0 * * Os_TE_52204 Chr9 21508579 21508580 - SC-8_LTR 4951 0.0003 (1/2987) 0 * * Os_TE_52198 Chr9 21499574 21499575 - TYPEM 227 0.0007 (2/2998) 0 * * Os_TE_52188 Chr9 21492316 21492317 - ORSiTETNOOT00130 2164 0.0003 (1/2959) 0 * * Os_TE_52182 Chr9 21487953 21487952 - HELITRON7_OS 10153 0.0014 (4/2951) 0 * Os_TE_52181 Os_TE_52181 Chr9 21487949 21487950 + HELITRON7_OS 10153 0.0017 (5/2955) 0 * Os_TE_52182 Os_TE_52161 Chr9 21483807 21472595 - ORSgTETN00200001 10994 0.7797 (2279/2923) 1 Intact Os_TE_52157 Os_TE_52157 Chr9 21472596 21483807 + SPMLIKE 10989 0.7818 (2282/2919) 1 Intact Os_TE_52161 Os_TE_52154 Chr9 21472340 21472339 + COPI2_LTR 4733 0.0010 (3/2978) 0 * * Os_TE_52117 Chr9 21458812 21458813 + AMYLTP 383 0.0017 (5/2986) 0 * Os_TE_52116 Os_TE_52116 Chr9 21458804 21458803 - AMYLTP 383 0.0017 (5/2992) 0 * Os_TE_52117 Os_TE_52113 Chr9 21458344 21458343 + MPING 430 0.0022 (5/2302) 0 * * Os_TE_52104 Chr9 21456897 21456898 - NDNA1TNA_OS 334 0.1651 (492/2980) 0 * Os_TE_52103 Os_TE_52103 Chr9 21456896 21456895 - ORSgTEMT00101341 314 0.1676 (500/2983) 0 * Os_TE_52104 Os_TE_52081 Chr9 21446648 21447391 - CLOUD 734 0.6949 (2018/2904) 1 Intact * Os_TE_52080 Chr9 21446595 21446596 + ORSgTEMT05200054 274 0.3283 (975/2970) 0 * Os_TE_52079 Os_TE_52079 Chr9 21446591 21446590 + YOUREN 286 0.3270 (971/2969) 0 * Os_TE_52080 Os_TE_52051 Chr9 21422497 21422119 - AMYLTP 383 0.8661 (1804/2083) 1 Intact Os_TE_52049 Os_TE_52049 Chr9 21422119 21422497 + AMYLTP 383 0.7061 (2054/2909) 1 Intact Os_TE_52051 Os_TE_52047 Chr9 21421959 21421958 + SZ-67LTR 1540 0.3240 (959/2960) 0 * * Os_TE_52033 Chr9 21415842 21415843 + INDITTO 263 0.0010 (3/2944) 0 * Os_TE_52032 Os_TE_52032 Chr9 21415840 21415839 - INDITTO 263 0.0007 (2/2931) 0 * Os_TE_52033 Os_TE_52030 Chr9 21415023 21415024 + COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_52029 Os_TE_52029 Chr9 21415019 21415018 - COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_52030 Os_TE_52014 Chr9 21412448 21412449 + TWIF 586 0.1739 (509/2927) 0 * Os_TE_52013 Os_TE_52013 Chr9 21412443 21412442 - ORSiTETNOOT00200 3563 0.1641 (477/2906) 0 * Os_TE_52014 Os_TE_52012 Chr9 21411903 21411904 + RIREX_LTR 8828 0.0003 (1/2970) 0 * Os_TE_52011 Os_TE_52011 Chr9 21411899 21411898 - RIREX_LTR 8828 0.0003 (1/2961) 0 * Os_TE_52012 Os_TE_52005 Chr9 21410536 21410537 + RIRE2_LTR 11306 0.0003 (1/2959) 0 * Os_TE_52004 Os_TE_52004 Chr9 21410532 21410531 - RIRE2_LTR 11306 0.0003 (1/2960) 0 * Os_TE_52005 Os_TE_51990 Chr9 21403441 21403442 + COPI2_LTR 4733 0.0040 (12/2974) 0 * * Os_TE_51983 Chr9 21401995 21401996 - SINE16_OS 116 0.3473 (1031/2969) 0 * * Os_TE_51980 Chr9 21401706 21401452 + ORSgTEMT01600403 239 0.7303 (1988/2722) 1 Intact * Os_TE_51964 Chr9 21395206 21395205 + SC-8_LTR 4951 0.0010 (3/2984) 0 * * Os_TE_51962 Chr9 21393976 21393975 - ORSgTEMT01602413 239 0.3369 (1001/2971) 0 * * Os_TE_51949 Chr9 21388707 21388708 - COPIA2-LTR_OS 6433 0.0023 (7/2983) 0 * Os_TE_51948 Os_TE_51948 Chr9 21388703 21388702 + COPIA2-LTR_OS 6433 0.0020 (6/2980) 0 * Os_TE_51949 Os_TE_51945 Chr9 21385881 21385882 + INDITTO 263 0.0479 (143/2985) 0 * Os_TE_51944 Os_TE_51944 Chr9 21385879 21385878 - INDITTO 263 0.0469 (140/2987) 0 * Os_TE_51945 Os_TE_51943 Chr9 21385875 21385876 + MPING 430 0.0010 (3/2985) 0 * Os_TE_51942 Os_TE_51942 Chr9 21385873 21385872 - MPING 430 0.0007 (2/2858) 0 * Os_TE_51943 Os_TE_51938 Chr9 21384615 21384616 + SZ-22_LTR 4403 0.0003 (1/2958) 0 * Os_TE_51937 Os_TE_51937 Chr9 21384611 21384610 - SZ-22_LTR 4403 0.0003 (1/2955) 0 * Os_TE_51938 Os_TE_51936 Chr9 21384434 21384433 - ORSgTEMT00700002 381 0.0013 (4/2989) 0 * Os_TE_51935 Os_TE_51935 Chr9 21384424 21384425 + ORSgTEMT00700017 386 0.0007 (2/2983) 0 * Os_TE_51936 Os_TE_51921 Chr9 21379726 21379727 + ORSiTERTOOT00296 5553 0.0003 (1/2987) 0 * Os_TE_51920 Os_TE_51920 Chr9 21379722 21379721 - SC-3_LTR 5748 0.0003 (1/2992) 0 * Os_TE_51921 Os_TE_51910 Chr9 21378816 21378815 + TELIA 141 0.0009 (2/2255) 0 * * Os_TE_51909 Chr9 21378718 21378717 - ORSiTEMT01000008 242 0.0013 (4/2977) 0 * * Os_TE_51863 Chr9 21365992 21365993 + INDITTO 263 0.0017 (5/2946) 0 * Os_TE_51862 Os_TE_51862 Chr9 21365990 21365989 - INDITTO 263 0.0017 (5/2979) 0 * Os_TE_51863 Os_TE_51845 Chr9 21362415 21362416 - COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * Os_TE_51844 Os_TE_51844 Chr9 21362411 21362410 + COPIA2-LTR_OS 6433 0.0003 (1/2982) 0 * Os_TE_51845 Os_TE_51834 Chr9 21360281 21360282 + MPING 430 0.0007 (2/2976) 0 * Os_TE_51833 Os_TE_51833 Chr9 21360279 21360278 - MPING 430 0.0007 (2/2968) 0 * Os_TE_51834 Os_TE_51818 Chr9 21354829 21354830 + AMYLTP 383 0.0230 (68/2960) 0 * Os_TE_51817 Os_TE_51817 Chr9 21354821 21354820 - AMYLTP 383 0.0247 (74/2994) 0 * Os_TE_51818 Os_TE_51803 Chr9 21347634 21347635 + ORSiTERTOOT00226 792 0.0003 (1/2995) 0 * Os_TE_51802 Os_TE_51802 Chr9 21347630 21347629 - SZ-22_LTR 4403 0.0003 (1/2992) 0 * Os_TE_51803 Os_TE_51799 Chr9 21346717 21346718 + TWIFB1 3737 0.0003 (1/2935) 0 * * Os_TE_51787 Chr9 21336587 21336588 + TWIFB1 3737 0.0003 (1/2950) 0 * * Os_TE_51755 Chr9 21322708 21322709 - INDITTO 263 0.0528 (158/2990) 0 * Os_TE_51754 Os_TE_51754 Chr9 21322706 21322705 + INDITTO 263 0.0535 (160/2992) 0 * Os_TE_51755 Os_TE_51740 Chr9 21310013 21310012 + ORSgTEMT02400110 218 0.3099 (913/2946) 0 * * Os_TE_51700 Chr9 21296765 21296766 + MPING 430 0.0006 (1/1762) 0 * * Os_TE_51694 Chr9 21296134 21296133 - CASTAWAY 364 0.0003 (1/2965) 0 * * Os_TE_51671 Chr9 21289466 21289467 + ORSiTERTOOT00028 8600 0.4659 (1231/2642) 0 * Os_TE_51670 Os_TE_51670 Chr9 21289462 21289461 - TRUNCATOR2_LTR 2904 0.4839 (1319/2726) 0 * Os_TE_51671 Os_TE_51628 Chr9 21283348 21283347 + ORSgTEMT01400031 216 0.0007 (2/2992) 0 * Os_TE_51627 Os_TE_51627 Chr9 21283347 21283348 + STOWAWAY9_OS 235 0.0003 (1/2990) 0 * Os_TE_51628 Os_TE_51626 Chr9 21283252 21283253 - MPING 430 0.0003 (1/2988) 0 * Os_TE_51625 Os_TE_51625 Chr9 21283250 21283249 + MPING 430 0.0003 (1/2997) 0 * Os_TE_51626 Os_TE_51601 Chr9 21274535 21274536 + ORSiTERTOOT00296 5553 0.0003 (1/2996) 0 * Os_TE_51600 Os_TE_51600 Chr9 21274531 21274530 - SC-3_LTR 5748 0.0003 (1/2996) 0 * Os_TE_51601 Os_TE_51579 Chr9 21268035 21268034 - ORSgTETNOOT02000 263 0.0012 (3/2593) 0 * * Os_TE_51552 Chr9 21257194 21257730 - CLOUD-3 550 0.8112 (2381/2935) 1 Intact * Os_TE_51531 Chr9 21244566 21244567 + ORSiTERTOOT00296 5553 0.0003 (1/2984) 0 * Os_TE_51530 Os_TE_51530 Chr9 21244562 21244561 - SC-3_LTR 5748 0.0003 (1/2987) 0 * Os_TE_51531 Os_TE_51519 Chr9 21236309 21236310 - AMYLTP 383 0.0027 (8/2989) 0 * Os_TE_51518 Os_TE_51518 Chr9 21236300 21236299 + AMYLTP 383 0.0027 (8/2991) 0 * Os_TE_51519 Os_TE_51459 Chr9 21206153 21206154 - RETROSAT2LTR 12796 0.0401 (120/2990) 0 * Os_TE_51458 Os_TE_51458 Chr9 21206151 21206150 + RETROSAT2LTR 12796 0.0404 (121/2994) 0 * Os_TE_51459 Os_TE_51448 Chr9 21203972 21203971 + SPMLIKE 10989 0.0004 (1/2845) 0 * * Os_TE_51444 Chr9 21201735 21201736 - DS-RICE2N 613 0.4169 (1245/2986) 0 * Os_TE_51443 Os_TE_51443 Chr9 21201728 21201727 + DS-RICE2N 613 0.4128 (1229/2977) 0 * Os_TE_51444 Os_TE_51421 Chr9 21187719 21187720 - RETRO2_LTR 12874 0.0025 (7/2800) 0 * Os_TE_51420 Os_TE_51420 Chr9 21187715 21187714 + RETRO2_LTR 12874 0.0014 (4/2872) 0 * Os_TE_51421 Os_TE_51415 Chr9 21186236 21186237 + SPMLIKE 10989 0.0003 (1/2860) 0 * * Os_TE_51393 Chr9 21181786 21181785 + MPING 430 0.0017 (5/2982) 0 * * Os_TE_51392 Chr9 21180900 21180901 + MuDR4_OS 7610 0.0017 (5/2994) 0 * * Os_TE_51390 Chr9 21180028 21180029 - COPIA2-LTR_OS 6433 0.0003 (1/2981) 0 * Os_TE_51389 Os_TE_51389 Chr9 21180024 21180023 + COPIA2-LTR_OS 6433 0.0003 (1/2976) 0 * Os_TE_51390 Os_TE_51384 Chr9 21178662 21178661 + ORSgTEMT01602181 239 0.3795 (1135/2991) 0 * * Os_TE_51314 Chr9 21155480 21155481 + SUSU 279 0.2515 (734/2918) 0 * * Os_TE_51266 Chr9 21140051 21140052 + INDITTO 263 0.0003 (1/2879) 0 * * Os_TE_51190 Chr9 21112058 21112057 - TYPEM 227 0.0007 (2/2998) 0 * Os_TE_51189 Os_TE_51189 Chr9 21112053 21112054 - ORSgTEMT02400179 221 0.0007 (2/2999) 0 * Os_TE_51190 Os_TE_51179 Chr9 21104142 21104143 + TOS17LTR 138 0.0003 (1/2955) 0 * Os_TE_51178 Os_TE_51178 Chr9 21104138 21104137 - TOS17LTR 138 0.0007 (2/2956) 0 * Os_TE_51179 Os_TE_51170 Chr9 21095272 21095273 + COPI2_LTR 4733 0.0010 (3/2995) 0 * Os_TE_51169 Os_TE_51169 Chr9 21095268 21095267 - COPI2_LTR 4733 0.0010 (3/2995) 0 * Os_TE_51170 Os_TE_51157 Chr9 21088707 21088708 - MPING 430 0.0003 (1/2952) 0 * Os_TE_51156 Os_TE_51156 Chr9 21088705 21088704 + MPING 430 0.0003 (1/2949) 0 * Os_TE_51157 Os_TE_51147 Chr9 21080765 21080766 + COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_51146 Os_TE_51146 Chr9 21080761 21080760 - COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_51147 Os_TE_51145 Chr9 21079977 21079978 + RIREX_LTR 8828 0.0007 (2/2993) 0 * Os_TE_51144 Os_TE_51144 Chr9 21079973 21079972 - RIREX_LTR 8828 0.0007 (2/2995) 0 * Os_TE_51145 Os_TE_51142 Chr9 21079814 21079813 - RIREX_LTR 8828 0.0007 (2/2991) 0 * * Os_TE_51133 Chr9 21075000 21075001 + GYPSY-A_LTR 8951 0.0003 (1/2981) 0 * Os_TE_51132 Os_TE_51132 Chr9 21074996 21074995 - GYPSY-A_LTR 8951 0.0003 (1/2978) 0 * Os_TE_51133 Os_TE_51130 Chr9 21073882 21073881 + TRUNCATOR 2918 0.0003 (1/2977) 0 * Os_TE_51129 Os_TE_51129 Chr9 21073881 21073882 - TRUNCATOR 2918 0.0003 (1/2938) 0 * Os_TE_51130 Os_TE_51049 Chr9 21025313 21025314 + ORSiCMCM00100017 5674 0.0010 (3/2990) 0 * Os_TE_51048 Os_TE_51048 Chr9 21025309 21025308 - SZ-36LTR 5825 0.0010 (3/2991) 0 * Os_TE_51049 Os_TE_51032 Chr9 21003995 21003994 - TREP215 239 0.0076 (5/662) -1 * * Os_TE_51024 Chr9 21001407 21001408 - RETRO2_LTR 12874 0.0007 (2/2992) 0 * * Os_TE_51017 Chr9 20999768 20999767 - COPI2_LTR 4733 0.0003 (1/2993) 0 * * Os_TE_51008 Chr9 20998206 20998207 - COPIA2-LTR_OS 6433 0.0037 (11/2985) 0 * * Os_TE_50995 Chr9 20993040 20993039 + CASTAWAY 364 0.0276 (82/2976) 0 * * Os_TE_50993 Chr9 20990846 20990845 - SZ-44LTR 1408 0.0003 (1/2992) 0 * * Os_TE_50987 Chr9 20986887 20986888 + MPING 430 0.0003 (1/2964) 0 * Os_TE_50986 Os_TE_50986 Chr9 20986885 20986884 - MPING 430 0.0003 (1/2986) 0 * Os_TE_50987 Os_TE_50980 Chr9 20981913 20981914 - OSTE21 1271 0.0003 (1/2994) 0 * * Os_TE_50975 Chr9 20979706 20979707 + OSCOPIA2_LTR 5476 0.0003 (1/2994) 0 * Os_TE_50974 Os_TE_50974 Chr9 20979702 20979701 - OSCOPIA2_LTR 5476 0.0003 (1/2989) 0 * Os_TE_50975 Os_TE_50966 Chr9 20972973 20972974 - ORSiTETNOOT00134 607 0.0003 (1/2989) 0 * Os_TE_50965 Os_TE_50965 Chr9 20972966 20972965 + TWIF 586 0.0003 (1/2989) 0 * Os_TE_50966 Os_TE_50964 Chr9 20972223 20972222 + F770 284 0.4249 (1270/2989) 0 * * Os_TE_50951 Chr9 20969251 20969252 - COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_50950 Os_TE_50950 Chr9 20969247 20969246 + COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_50951 Os_TE_50948 Chr9 20968934 20968935 - ORSgTEMT02400246 177 0.0010 (3/2992) 0 * * Os_TE_50935 Chr9 20964439 20964440 + ORSgTETNOOT00908 242 0.3061 (917/2996) 0 * Os_TE_50934 Os_TE_50934 Chr9 20964437 20964436 - ORSgTETNOOT00908 242 0.3054 (914/2993) 0 * Os_TE_50935 Os_TE_50891 Chr9 20955480 20955481 - NDNA1TNA_OS 334 0.0052 (15/2911) 0 * Os_TE_50890 Os_TE_50890 Chr9 20955478 20955477 + NDNA1TNA_OS 334 0.0048 (14/2922) 0 * Os_TE_50891 Os_TE_50848 Chr9 20940344 20940345 + MuDR2_OS 6770 0.0020 (6/2992) 0 * Os_TE_50847 Os_TE_50847 Chr9 20940336 20940335 - MuDR2_OS 6770 0.0010 (3/2989) 0 * Os_TE_50848 Os_TE_50841 Chr9 20935357 20935358 - SC-8_LTR 4951 0.0003 (1/2988) 0 * Os_TE_50840 Os_TE_50840 Chr9 20935353 20935352 + SC-8_LTR 4951 0.0003 (1/2987) 0 * Os_TE_50841 Os_TE_50839 Chr9 20934921 20934922 + SC-8_LTR 4951 0.0003 (1/2988) 0 * Os_TE_50838 Os_TE_50838 Chr9 20934917 20934916 - SC-8_LTR 4951 0.0003 (1/2987) 0 * Os_TE_50839 Os_TE_50819 Chr9 20922330 20922331 - ORSiTERTOOT00308 5023 0.0111 (33/2985) 0 * Os_TE_50818 Os_TE_50818 Chr9 20922326 20922325 - ORSiTERTOOT00308 5023 0.0107 (32/2988) 0 * Os_TE_50819 Os_TE_50809 Chr9 20919017 20919018 - HARB-1_OS 5166 0.0003 (1/2998) 0 * Os_TE_50808 Os_TE_50808 Chr9 20919015 20919014 + HARB-1_OS 5166 0.0003 (1/2998) 0 * Os_TE_50809 Os_TE_50779 Chr9 20911331 20911330 + RETRO2_LTR 12874 0.0025 (7/2818) 0 * * Os_TE_50776 Chr9 20911051 20911052 + STOWAWAY13_OS 251 0.0003 (1/2977) 0 * * Os_TE_50749 Chr9 20890890 20890891 - SZ-22_LTR 4403 0.0023 (7/2999) 0 * Os_TE_50748 Os_TE_50748 Chr9 20890886 20890885 + ORSiTERTOOT00034 791 0.0023 (7/2997) 0 * Os_TE_50749 Os_TE_50725 Chr9 20880621 20880622 + COPIA2-LTR_OS 6433 0.0003 (1/2949) 0 * Os_TE_50724 Os_TE_50724 Chr9 20880617 20880616 - COPIA2-LTR_OS 6433 0.0003 (1/2873) 0 * Os_TE_50725 Os_TE_50708 Chr9 20875305 20875306 - Mudr5_OS 5952 0.0013 (1/770) 0 * * Os_TE_50705 Chr9 20874787 20874786 - COPIA2-LTR_OS 6433 0.0007 (2/2961) 0 * * Os_TE_50700 Chr9 20871891 20871892 + RIREX_LTR 8828 0.0003 (1/2993) 0 * Os_TE_50699 Os_TE_50699 Chr9 20871887 20871886 - RIREX_LTR 8828 0.0003 (1/2997) 0 * Os_TE_50700 Os_TE_50692 Chr9 20868841 20868842 + ORSgTERT00200919 424 0.0003 (1/2998) 0 * * Os_TE_50686 Chr9 20867508 20867509 - MuDR3_OS 8604 0.3994 (1177/2947) 0 * Os_TE_50685 Os_TE_50685 Chr9 20867501 20867500 + MuDR3_OS 8604 0.3881 (1127/2904) 0 * Os_TE_50686 Os_TE_50658 Chr9 20854524 20854525 + ORSiTERTOOT00296 5553 0.0003 (1/2993) 0 * Os_TE_50657 Os_TE_50657 Chr9 20854520 20854519 - SC-3_LTR 5748 0.0003 (1/2992) 0 * Os_TE_50658 Os_TE_50641 Chr9 20846261 20846262 - MPING 430 0.0335 (98/2924) 0 * Os_TE_50640 Os_TE_50640 Chr9 20846259 20846258 + MPING 430 0.0333 (98/2940) 0 * Os_TE_50641 Os_TE_50630 Chr9 20841470 20841471 + INDITTO 263 0.0013 (4/2973) 0 * Os_TE_50629 Os_TE_50629 Chr9 20841468 20841467 - INDITTO 263 0.0013 (4/2964) 0 * Os_TE_50630 Os_TE_50627 Chr9 20840158 20840159 - RIREX_LTR 8828 0.0003 (1/2994) 0 * * Os_TE_50624 Chr9 20838250 20838251 - MPING 430 0.0007 (2/2996) 0 * Os_TE_50623 Os_TE_50623 Chr9 20838248 20838247 + MPING 430 0.0007 (2/2998) 0 * Os_TE_50624 Os_TE_50611 Chr9 20830872 20830873 + COPI2_LTR 4733 0.0003 (1/2993) 0 * Os_TE_50610 Os_TE_50610 Chr9 20830868 20830867 - COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_50611 Os_TE_50563 Chr9 20820692 20820693 + MPING 430 0.0004 (1/2523) 0 * * Os_TE_50561 Chr9 20820680 20820681 + STOWAWAY51_OS 246 0.0221 (26/1174) 0 * * Os_TE_50557 Chr9 20819577 20819578 + NDNA1TNA_OS 334 0.0261 (78/2994) 0 * Os_TE_50556 Os_TE_50556 Chr9 20819575 20819574 - NDNA1TNA_OS 334 0.0268 (80/2989) 0 * Os_TE_50557 Os_TE_50545 Chr9 20817052 20817053 - SZ-22_LTR 4403 0.0013 (2/1560) 0 * * Os_TE_50537 Chr9 20816148 20816149 - NDNA1TNA_OS 334 0.0174 (52/2986) 0 * * Os_TE_50522 Chr9 20813376 20813377 - OSTE33 1012 0.0060 (18/2985) 0 * * Os_TE_50520 Chr9 20813200 20813201 - MPING 430 0.0003 (1/2987) 0 * * Os_TE_50513 Chr9 20811166 20811167 - ORSgTEMT02400246 177 0.0003 (1/2936) 0 * * Os_TE_50483 Chr9 20803829 20803828 + STOWAWAY51_OS 246 0.0067 (20/2993) 0 * Os_TE_50482 Os_TE_50482 Chr9 20803823 20803824 + ORSgTEMT01601591 242 0.0057 (17/2996) 0 * Os_TE_50483 Os_TE_50481 Chr9 20803646 20803647 - ORSgTEMT00600085 364 0.5357 (1597/2981) 0 * * Os_TE_50475 Chr9 20803228 20803227 - MERMITED 1572 0.0017 (5/2981) 0 * * Os_TE_50474 Chr9 20803087 20803088 + MERMITEH 1307 0.0017 (5/2993) 0 * * Os_TE_50473 Chr9 20802946 20802947 - MuDR3_OS 8604 0.0007 (2/2991) 0 * * Os_TE_50434 Chr9 20790404 20790403 + NDNA2TNA_OS 346 0.2454 (728/2967) 0 * Os_TE_50433 Os_TE_50433 Chr9 20790403 20790404 - ORSgTEMT00100797 337 0.2445 (729/2982) 0 * Os_TE_50434 Os_TE_50417 Chr9 20781122 20781123 - SC-3_LTR 5748 0.0003 (1/2991) 0 * Os_TE_50416 Os_TE_50416 Chr9 20781118 20781117 + ORSiTERTOOT00296 5553 0.0003 (1/2881) 0 * Os_TE_50417 Os_TE_50401 Chr9 20774242 20774243 - AMYLTP 383 0.0013 (4/2978) 0 * Os_TE_50400 Os_TE_50400 Chr9 20774234 20774233 + AMYLTP 383 0.0017 (5/2979) 0 * Os_TE_50401 Os_TE_50392 Chr9 20769915 20769916 + ORSgTETNOOT01834 251 0.0003 (1/2969) 0 * * Os_TE_50390 Chr9 20767454 20767455 - SC-8_LTR 4951 0.0003 (1/2986) 0 * Os_TE_50389 Os_TE_50389 Chr9 20767450 20767449 + SC-8_LTR 4951 0.0003 (1/2993) 0 * Os_TE_50390 Os_TE_50336 Chr9 20753114 20753113 - ORSgTEMT01601208 238 0.0007 (2/2925) 0 * * Os_TE_50305 Chr9 20735326 20735327 - SC-3_LTR 5748 0.0003 (1/2994) 0 * Os_TE_50304 Os_TE_50304 Chr9 20735322 20735321 + ORSiTERTOOT00296 5553 0.0003 (1/2994) 0 * Os_TE_50305 Os_TE_50300 Chr9 20733134 20733135 + SC-8_LTR 4951 0.0017 (5/2990) 0 * Os_TE_50299 Os_TE_50299 Chr9 20733130 20733129 - SC-8_LTR 4951 0.0017 (5/2990) 0 * Os_TE_50300 Os_TE_50295 Chr9 20729204 20729205 + ORSiTERTOOT00034 791 0.0024 (7/2978) 0 * Os_TE_50294 Os_TE_50294 Chr9 20729200 20729199 - SZ-22_LTR 4403 0.0024 (7/2935) 0 * Os_TE_50295 Os_TE_50293 Chr9 20729072 20729073 + COPIA2-LTR_OS 6433 0.0003 (1/2984) 0 * Os_TE_50292 Os_TE_50292 Chr9 20729068 20729067 - COPIA2-LTR_OS 6433 0.0003 (1/2982) 0 * Os_TE_50293 Os_TE_50290 Chr9 20728081 20728080 - TRUNCATOR2_LTR 2904 0.0011 (3/2846) 0 * * Os_TE_50288 Chr9 20726587 20726588 + ORSiTERTOOT00296 5553 0.0003 (1/2993) 0 * Os_TE_50287 Os_TE_50287 Chr9 20726583 20726582 - SC-3_LTR 5748 0.0003 (1/2991) 0 * Os_TE_50288 Os_TE_50274 Chr9 20721618 20721619 + ORSgTETNOOT01834 251 0.0003 (1/2925) 0 * * Os_TE_50269 Chr9 20719420 20719419 - SC-8_LTR 4951 0.0003 (1/2987) 0 * * Os_TE_50260 Chr9 20715487 20715488 - RETRO2_LTR 12874 0.0007 (2/2978) 0 * Os_TE_50259 Os_TE_50259 Chr9 20715483 20715482 + RETRO2_LTR 12874 0.0007 (2/2984) 0 * Os_TE_50260 Os_TE_50231 Chr9 20703949 20703950 - COPIA2-LTR_OS 6433 0.0003 (1/2972) 0 * * Os_TE_50227 Chr9 20702859 20696430 - COPIA2-LTR_OS 6433 0.7420 (2215/2985) 1 Intact Os_TE_50226 Os_TE_50226 Chr9 20696430 20702859 + COPIA2-LTR_OS 6433 0.7400 (2203/2977) 1 Intact Os_TE_50227 Os_TE_50215 Chr9 20691116 20691117 + MPING 430 0.0003 (1/2983) 0 * Os_TE_50214 Os_TE_50214 Chr9 20691114 20691113 - MPING 430 0.0003 (1/2978) 0 * Os_TE_50215 Os_TE_50178 Chr9 20685675 20685676 - INDITTO 263 0.0331 (99/2992) 0 * Os_TE_50177 Os_TE_50177 Chr9 20685673 20685672 + INDITTO 263 0.0331 (99/2994) 0 * Os_TE_50178 Os_TE_50173 Chr9 20684615 20684616 - MPING 430 0.0003 (1/2937) 0 * * Os_TE_50162 Chr9 20680165 20680166 - RIRE2_LTR 11306 0.0010 (3/2983) 0 * Os_TE_50161 Os_TE_50161 Chr9 20680161 20680160 - ORSgTERT00201216 11284 0.0010 (3/2987) 0 * Os_TE_50162 Os_TE_50154 Chr9 20668528 20668529 + RETRO2_LTR 12874 0.0010 (3/2956) 0 * Os_TE_50153 Os_TE_50153 Chr9 20668524 20668523 - RETRO2_LTR 12874 0.0010 (3/2953) 0 * Os_TE_50154 Os_TE_50145 Chr9 20666609 20666610 - MUDRN3_OS 903 0.0014 (4/2931) 0 * * Os_TE_50075 Chr9 20641203 20641204 - TESS 244 0.0711 (213/2997) 0 * * Os_TE_50070 Chr9 20640462 20640463 + BAJIELTR 4500 0.0733 (219/2989) 0 * * Os_TE_50052 Chr9 20636428 20636429 + ORSgTEMT04600032 273 0.0010 (3/2927) 0 * Os_TE_50051 Os_TE_50051 Chr9 20636422 20636421 - ORSgTEMT04600032 273 0.0010 (3/2919) 0 * Os_TE_50052 Os_TE_50044 Chr9 20634063 20634062 + NDNA1TNA_OS 334 0.0027 (8/2986) 0 * * Os_TE_50030 Chr9 20624238 20624239 - SPMLIKE 10989 0.0007 (2/2986) 0 * Os_TE_50029 Os_TE_50029 Chr9 20624236 20624235 + SPMLIKE 10989 0.0007 (2/2984) 0 * Os_TE_50030 Os_TE_50022 Chr9 20618043 20618042 + TRUNCATOR 2918 0.0003 (1/2996) 0 * * Os_TE_50014 Chr9 20613371 20613370 - OSTE24 683 0.0007 (2/2989) 0 * * Os_TE_49986 Chr9 20600601 20600602 + MERMITEA 1710 0.0013 (4/2986) 0 * * Os_TE_49972 Chr9 20597415 20597414 + Cassandra_OS-LTR 764 0.0017 (5/2995) 0 * Os_TE_49971 Os_TE_49971 Chr9 20597407 20597408 - Cassandra_OS-LTR 764 0.0017 (5/2997) 0 * Os_TE_49972 Os_TE_49967 Chr9 20596127 20596128 - NDNA1TNA_OS 334 0.0281 (81/2885) 0 * * Os_TE_49956 Chr9 20591449 20591450 + YOUREN 286 0.2022 (597/2953) 0 * * Os_TE_49953 Chr9 20591084 20591083 + COPIA2-LTR_OS 6433 0.0007 (2/2950) 0 * * Os_TE_49950 Chr9 20590097 20590098 - CASTAWAY 364 0.0610 (182/2986) 0 * Os_TE_49949 Os_TE_49949 Chr9 20590095 20590094 + ORSgTEMT00600272 361 0.0620 (185/2983) 0 * Os_TE_49950 Os_TE_49934 Chr9 20583765 20583764 + HARB-1_OS 5166 0.0008 (2/2664) 0 * * Os_TE_49914 Chr9 20575718 20575719 + OSTE33 1012 0.0007 (2/2927) 0 * * Os_TE_49905 Chr9 20572092 20572093 + ORSgTETNOOT00908 242 0.0007 (2/2991) 0 * * Os_TE_49896 Chr9 20567102 20566738 - CASTAWAY 364 0.4833 (1447/2994) 1 Intact Os_TE_49895 Os_TE_49895 Chr9 20566738 20567102 + CASTAWAY 364 0.4842 (1451/2997) 1 Intact Os_TE_49896 Os_TE_49892 Chr9 20566372 20566371 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * * Os_TE_49870 Chr9 20562652 20562653 - MPING 430 0.0003 (1/2991) 0 * Os_TE_49869 Os_TE_49869 Chr9 20562650 20562649 + MPING 430 0.0003 (1/2993) 0 * Os_TE_49870 Os_TE_49847 Chr9 20549006 20549007 + RIREX_LTR 8828 0.0010 (3/2983) 0 * Os_TE_49846 Os_TE_49846 Chr9 20549002 20549001 - RIREX_LTR 8828 0.0010 (3/2975) 0 * Os_TE_49847 Os_TE_49844 Chr9 20548242 20548241 - ORSgTEMT02400179 221 0.0007 (2/2960) 0 * * Os_TE_49843 Chr9 20547520 20547519 - ORSgTEMT00700002 381 0.0003 (1/2965) 0 * * Os_TE_49830 Chr9 20544718 20544719 + SC-8_LTR 4951 0.0003 (1/2982) 0 * * Os_TE_49827 Chr9 20542528 20542529 + ORSiTERTOOT00381 4988 0.0003 (1/2993) 0 * Os_TE_49826 Os_TE_49826 Chr9 20542524 20542523 - SC-8_LTR 4951 0.0003 (1/2994) 0 * Os_TE_49827 Os_TE_49824 Chr9 20541299 20541300 + NDNA1TNA_OS 334 0.0020 (6/2999) 0 * Os_TE_49823 Os_TE_49823 Chr9 20541297 20541296 - NDNA1TNA_OS 334 0.0020 (6/2997) 0 * Os_TE_49824 Os_TE_49811 Chr9 20533627 20533628 + ENSPM4_OS 11610 0.1883 (564/2996) 0 * * Os_TE_49810 Chr9 20533429 20533430 + ORSgTETNOOT01834 251 0.0003 (1/2997) 0 * * Os_TE_49791 Chr9 20524531 20524532 + ORSgTEMT01602181 239 0.0003 (1/2969) 0 * * Os_TE_49675 Chr9 20487075 20487076 + NDNA1TNA_OS 334 0.0013 (4/2997) 0 * * Os_TE_49659 Chr9 20480455 20480454 + ORSgTEMT00100694 349 0.0023 (7/2999) 0 * * Os_TE_49637 Chr9 20467002 20467001 + ORSgTEMT01601591 242 0.0006 (1/1607) 0 * * Os_TE_49614 Chr9 20462438 20462439 - STOWAWAY51_OS 246 0.0007 (2/2965) 0 * * Os_TE_49613 Chr9 20462379 20462155 - ORSiTEMT01000008 242 0.3395 (1010/2975) 1 Intact * Os_TE_49612 Chr9 20462097 20462098 + COPI2_LTR 4733 0.0003 (1/2977) 0 * Os_TE_49611 Os_TE_49611 Chr9 20462093 20462092 - COPI2_LTR 4733 0.0004 (1/2820) 0 * Os_TE_49612 Os_TE_49603 Chr9 20461127 20461128 + SPMLIKE 10989 0.0007 (2/2999) 0 * * Os_TE_49597 Chr9 20458655 20458656 - STOWAWAY51_OS 246 0.0003 (1/2986) 0 * * Os_TE_49585 Chr9 20454263 20454264 + MPING 430 0.1775 (531/2991) 0 * Os_TE_49584 Os_TE_49584 Chr9 20454261 20454260 - MPING 430 0.1734 (518/2987) 0 * Os_TE_49585 Os_TE_49575 Chr9 20450301 20450300 - SZ-48LTR 3632 0.0029 (8/2742) 0 * * Os_TE_49566 Chr9 20448012 20448013 + ORSiCMCM00100019 2717 0.0028 (3/1059) 0 * Os_TE_49565 Os_TE_49565 Chr9 20448008 20448007 - TRUNCATOR2_LTR 2904 0.0038 (4/1059) 0 * Os_TE_49566 Os_TE_49552 Chr9 20445799 20445800 - TESSBIG 4057 0.6570 (1952/2971) 0 * Os_TE_49551 Os_TE_49551 Chr9 20445792 20445791 + TESSBIG 4057 0.6649 (1988/2990) 0 * Os_TE_49552 Os_TE_49549 Chr9 20444650 20444651 + CACTA-I 1124 0.0027 (8/2986) 0 * * Os_TE_49528 Chr9 20439128 20438550 + JOUZHENA 607 0.5029 (1473/2929) 1 Intact Os_TE_49527 Os_TE_49527 Chr9 20438550 20439128 - JOUZHENA 607 0.5084 (1508/2966) 1 Intact Os_TE_49528 Os_TE_49497 Chr9 20430035 20430034 + COPI2_LTR 4733 0.1797 (539/2999) 0 * * Os_TE_49489 Chr9 20427874 20427873 - RETROSAT3_LTR 11537 0.0010 (3/2938) 0 * * Os_TE_49470 Chr9 20402910 20402911 - SUSU 279 0.6626 (1978/2985) 0 * Os_TE_49469 Os_TE_49469 Chr9 20402908 20402907 + ORSgTEMT05000092 279 0.6593 (1962/2976) 0 * Os_TE_49470 Os_TE_49417 Chr9 20376337 20376338 + RETRO2A_LTR 12895 0.0966 (276/2857) 0 * * Os_TE_49399 Chr9 20362784 20362783 - BAJIELTR 4500 0.0007 (2/2981) 0 * * Os_TE_49396 Chr9 20362199 20362200 + ORSiTERTOOT00027 10853 0.0003 (1/2992) 0 * Os_TE_49395 Os_TE_49395 Chr9 20362195 20362194 + ORSiTERTOOT00027 10853 0.0003 (1/2994) 0 * Os_TE_49396 Os_TE_49394 Chr9 20361938 20361939 - RIREX_LTR 8828 0.0013 (4/2986) 0 * Os_TE_49393 Os_TE_49393 Chr9 20361934 20361933 + RIREX_LTR 8828 0.0013 (4/2986) 0 * Os_TE_49394 Os_TE_49376 Chr9 20356535 20356536 + RETRO2_LTR 12874 0.0014 (4/2929) 0 * * Os_TE_49366 Chr9 20354908 20354907 - ORSgTERT00201216 11284 0.0053 (16/2996) 0 * * Os_TE_49358 Chr9 20347824 20347825 + F804 170 0.0010 (3/2966) 0 * Os_TE_49357 Os_TE_49357 Chr9 20347816 20347815 - F804 170 0.0010 (3/2962) 0 * Os_TE_49358 Os_TE_49347 Chr9 20341353 20341716 + CASTAWAY 364 0.4033 (1185/2938) 1 Intact * Os_TE_49326 Chr9 20335814 20335815 - ORSiTETNOOT00200 3563 0.0057 (17/2995) 0 * Os_TE_49325 Os_TE_49325 Chr9 20335807 20335806 + TWIF 586 0.0057 (17/2993) 0 * Os_TE_49326 Os_TE_49287 Chr9 20312450 20312451 - TYPEU1 380 0.3985 (1193/2994) 0 * Os_TE_49286 Os_TE_49286 Chr9 20312443 20312442 + TYPEU4 402 0.3970 (1187/2990) 0 * Os_TE_49287 Os_TE_49281 Chr9 20311493 20311492 - ORSgTETN00200001 10994 0.0047 (14/2958) 0 * * Os_TE_49273 Chr9 20310096 20310097 + COPI2_LTR 4733 0.0010 (3/2919) 0 * Os_TE_49272 Os_TE_49272 Chr9 20310092 20310091 - COPI2_LTR 4733 0.0007 (2/2924) 0 * Os_TE_49273 Os_TE_49262 Chr9 20307529 20307528 - HELITRON4_OS 13190 0.1286 (175/1361) 0 * * Os_TE_49242 Chr9 20301861 20301862 - COPIA2-LTR_OS 6433 0.0003 (1/2965) 0 * * Os_TE_49240 Chr9 20301566 20301567 - TYPEM 227 0.0010 (3/2980) 0 * * Os_TE_49222 Chr9 20299945 20299946 + ENSPM5_OS 9581 0.0017 (5/2961) 0 * Os_TE_49221 Os_TE_49221 Chr9 20299943 20299942 - ENSPM5_OS 9581 0.0027 (8/2967) 0 * Os_TE_49222 Os_TE_49213 Chr9 20292264 20292265 + RETROSAT4_LTR 13504 0.0017 (5/2938) 0 * Os_TE_49212 Os_TE_49212 Chr9 20292260 20292259 - SZ-35LTR 3853 0.0025 (7/2857) 0 * Os_TE_49213 Os_TE_49210 Chr9 20291072 20291071 - STOWAWAY51_OS 246 0.0612 (179/2925) 0 * Os_TE_49209 Os_TE_49209 Chr9 20291056 20291057 - STOWAWAY44_OS 240 0.0642 (189/2944) 0 * Os_TE_49210 Os_TE_49138 Chr9 20273179 20273180 - MPING 430 0.0010 (3/2961) 0 * * Os_TE_49073 Chr9 20255193 20255194 - TRUNCATOR 2918 0.0935 (277/2961) 0 * * Os_TE_49066 Chr9 20252404 20252405 + RETRO1_LTR 8314 0.0003 (1/2955) 0 * * Os_TE_49051 Chr9 20249879 20249878 + ORSiCMCM00100019 2717 0.0261 (78/2986) 0 * * Os_TE_49005 Chr9 20228000 20228001 - ORSgTEMT02400179 221 0.0648 (189/2918) 0 * * Os_TE_49003 Chr9 20227926 20227925 - TYPEM 227 0.0004 (1/2803) 0 * * Os_TE_48977 Chr9 20220938 20220939 + ORSgTEMT01602181 239 0.0660 (193/2925) 0 * * Os_TE_48958 Chr9 20214386 20214385 - STOWAWAY51_OS 246 0.0004 (1/2853) 0 * Os_TE_48957 Os_TE_48957 Chr9 20214380 20214381 + STOWAWAY51_OS 246 0.0003 (1/2974) 0 * Os_TE_48958 Os_TE_48956 Chr9 20214252 20214251 - OLO24 345 0.0830 (248/2988) 0 * * Os_TE_48955 Chr9 20214215 20214216 - NDNA1TNA_OS 334 0.0056 (16/2853) 0 * * Os_TE_48953 Chr9 20214184 20214183 + ORSgTETNOOT01498 145 0.0773 (230/2977) 0 * * Os_TE_48943 Chr9 20211617 20211618 - ORSgTEMT01600223 220 0.0016 (4/2500) 0 * * Os_TE_48937 Chr9 20209933 20209934 - COWARD 200 0.1193 (348/2916) 0 * Os_TE_48936 Os_TE_48936 Chr9 20209931 20209930 - COWARD 200 0.1272 (372/2925) 0 * Os_TE_48937 Os_TE_48916 Chr9 20199680 20202490 - SEVERIN-2 1952 0.8671 (2361/2723) -1 Intact * Os_TE_48897 Chr9 20194814 20196288 + SZ-19LTR 1513 0.8830 (2603/2948) 0.89 Intact * Os_TE_48893 Chr9 20193817 20193818 + OSTONOR1_LTR 6440 0.0003 (1/2922) 0 * Os_TE_48892 Os_TE_48892 Chr9 20193813 20193812 - OSTONOR1_LTR 6440 0.0003 (1/2948) 0 * Os_TE_48893 Os_TE_48884 Chr9 20192713 20192714 + NDNA1TNA_OS 334 0.0055 (16/2897) 0 * Os_TE_48883 Os_TE_48883 Chr9 20192711 20192710 - NDNA1TNA_OS 334 0.0059 (17/2905) 0 * Os_TE_48884 Os_TE_48882 Chr9 20192704 20192703 + ORSgTEMT00600376 329 0.0775 (224/2889) 0 * * Os_TE_48871 Chr9 20189739 20189738 + ORSgTEMT00100272 356 0.0803 (240/2987) 0 * Os_TE_48870 Os_TE_48870 Chr9 20189738 20189739 + NDNA1TNA_OS 334 0.0802 (240/2992) 0 * Os_TE_48871 Os_TE_48862 Chr9 20182992 20182993 - OSTE15 1168 0.0500 (143/2862) 0 * Os_TE_48861 Os_TE_48861 Chr9 20182988 20182987 + OSMU5 4881 0.0467 (140/2996) 0 * Os_TE_48862 Os_TE_48846 Chr9 20178102 20178103 - UNIQUE 158 0.1250 (365/2919) 0 * * Os_TE_48834 Chr9 20177384 20177906 - SUSU 279 0.8834 (2569/2908) 1 Intact * Os_TE_48833 Chr9 20177359 20177358 + ORSgTEMT01601591 242 0.0008 (2/2585) 0 * Os_TE_48832 Os_TE_48832 Chr9 20177356 20177357 + ORSgTEMT01601591 242 0.0007 (2/2961) 0 * Os_TE_48833 Os_TE_48830 Chr9 20177095 20177094 - INDITTO 263 0.0625 (185/2959) 0 * * Os_TE_48826 Chr9 20176603 20176361 + ORSgTETNOOT01998 254 0.8767 (2589/2953) 1 Intact Os_TE_48824 Os_TE_48824 Chr9 20176361 20176598 + ORSgTETNOOT01834 251 0.8801 (2548/2895) 1 Intact Os_TE_48826 Os_TE_48823 Chr9 20176270 20176269 + ORSgTETNOOT02406 265 0.0680 (191/2807) 0 * Os_TE_48822 Os_TE_48822 Chr9 20176263 20176264 + INDITTO 263 0.0644 (179/2779) 0 * Os_TE_48823 Os_TE_48818 Chr9 20175967 20176196 - STOWAWAY21_OS 243 0.8755 (2574/2940) 1 Intact * Os_TE_48812 Chr9 20174692 20174691 - ORSgTEMT00501811 148 0.1270 (379/2985) 0 * * Os_TE_48803 Chr9 20169448 20169449 - ORSgTEMT00500026 147 0.1306 (390/2987) 0 * * Os_TE_48802 Chr9 20169204 20169205 - COPI2_LTR 4733 0.0004 (1/2638) 0 * Os_TE_48801 Os_TE_48801 Chr9 20169200 20169199 + COPI2_LTR 4733 0.0004 (1/2769) 0 * Os_TE_48802 Os_TE_48799 Chr9 20167907 20167906 + COPIA2-LTR_OS 6433 0.0007 (2/2755) 0 * * Os_TE_48798 Chr9 20166302 20166062 + TREP215 239 0.8449 (2141/2534) 1 Intact * Os_TE_48793 Chr9 20165317 20165318 + COPIA2-LTR_OS 6433 0.0004 (1/2528) 0 * Os_TE_48792 Os_TE_48792 Chr9 20165313 20165312 - COPIA2-LTR_OS 6433 0.0004 (1/2564) 0 * Os_TE_48793 Os_TE_48791 Chr9 20164572 20164573 - COPIA2-LTR_OS 6433 0.0010 (3/2997) 0 * Os_TE_48790 Os_TE_48790 Chr9 20164568 20164567 + COPIA2-LTR_OS 6433 0.0010 (3/2999) 0 * Os_TE_48791 Os_TE_48788 Chr9 20162822 20162821 + ORSgTEMT00101674 340 0.5308 (1560/2939) 0 * Os_TE_48787 Os_TE_48787 Chr9 20162821 20162822 + NDNA1TNA_OS 334 0.5178 (1543/2980) 0 * Os_TE_48788 Os_TE_48786 Chr9 20162707 20162708 - SETARIA 1402 0.0459 (134/2921) 0 * Os_TE_48785 Os_TE_48785 Chr9 20162699 20162698 + SETARIA 1402 0.0603 (179/2968) 0 * Os_TE_48786 Os_TE_48752 Chr9 20145034 20145035 - DNAUN1_OS 408 0.0146 (42/2868) 0 * * Os_TE_48750 Chr9 20142558 20142559 - ORSgTEMT00502363 147 0.0540 (159/2944) 0 * * Os_TE_48735 Chr9 20140288 20140287 - GAIJIN 147 0.0534 (148/2774) 0 * * Os_TE_48731 Chr9 20139436 20139435 + ORSgTEMT01601122 212 0.0018 (5/2748) 0 * * Os_TE_48726 Chr9 20137723 20137724 + NDNA1TNA_OS 334 0.0312 (93/2982) 0 * Os_TE_48725 Os_TE_48725 Chr9 20137721 20137720 - NDNA1TNA_OS 334 0.0338 (101/2984) 0 * Os_TE_48726 Os_TE_48693 Chr9 20116363 20116364 + RETROSAT4_LTR 13504 0.0187 (56/2989) 0 * * Os_TE_48621 Chr9 20095371 20095372 - SC-8_LTR 4951 0.0003 (1/2988) 0 * Os_TE_48620 Os_TE_48620 Chr9 20095367 20095366 + SC-8_LTR 4951 0.0003 (1/2990) 0 * Os_TE_48621 Os_TE_48614 Chr9 20092675 20092674 - COPIA2-LTR_OS 6433 0.0003 (1/2904) 0 * * Os_TE_48611 Chr9 20087302 20087303 + ORSiTERTOOT00296 5553 0.0003 (1/2995) 0 * Os_TE_48610 Os_TE_48610 Chr9 20087298 20087297 - SC-3_LTR 5748 0.0003 (1/2992) 0 * Os_TE_48611 Os_TE_48605 Chr9 20084096 20084097 - F770 284 0.0060 (18/2990) 0 * Os_TE_48604 Os_TE_48604 Chr9 20084094 20084093 + F770 284 0.0057 (17/2992) 0 * Os_TE_48605 Os_TE_48567 Chr9 20058176 20058175 - ORSgTEMT02900061 318 0.6661 (1983/2977) 0 * * Os_TE_48536 Chr9 20041660 20041661 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_48535 Os_TE_48535 Chr9 20041656 20041655 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_48536 Os_TE_48511 Chr9 20030250 20030251 - SZ-62LTR 3649 0.0022 (6/2785) 0 * Os_TE_48510 Os_TE_48510 Chr9 20030246 20030245 + SZ-62LTR 3649 0.0018 (5/2780) 0 * Os_TE_48511 Os_TE_48445 Chr9 19989304 19989305 + ORSiTERTOOT00433 5416 0.0003 (1/2933) 0 * * Os_TE_48422 Chr9 19965680 19965679 - ORSiTETNOOT00134 607 0.0003 (1/2932) 0 * * Os_TE_48405 Chr9 19955563 19955564 - INDITTO 263 0.0003 (1/2980) 0 * * Os_TE_48402 Chr9 19955485 19955484 + MPING 430 0.0003 (1/2961) 0 * * Os_TE_48349 Chr9 19942860 19942859 + TRUNCATOR 2918 0.0125 (37/2963) 0 * * Os_TE_48339 Chr9 19941178 19941177 - ORSgTEMT01701458 154 0.0004 (1/2830) 0 * * Os_TE_48337 Chr9 19941149 19941148 + RIREX_LTR 8828 0.1163 (330/2838) 0 * * Os_TE_48268 Chr9 19910321 19910320 - RETRO2_LTR 12874 0.5423 (1591/2934) 0 * * Os_TE_48203 Chr9 19886635 19886636 - COPI2_LTR 4733 0.0007 (2/2990) 0 * Os_TE_48202 Os_TE_48202 Chr9 19886631 19886630 + COPI2_LTR 4733 0.0007 (2/2992) 0 * Os_TE_48203 Os_TE_48196 Chr9 19878477 19878478 + TWIF 586 0.0007 (2/2959) 0 * Os_TE_48195 Os_TE_48195 Chr9 19878470 19878469 - ORSiTETNOOT00134 607 0.0003 (1/2959) 0 * Os_TE_48196 Os_TE_48190 Chr9 19877812 19877813 - ORSgTEMT02000041 194 0.6689 (1986/2969) 0 * * Os_TE_48186 Chr9 19876145 19876144 + OSTONOR1_LTR 6440 0.0003 (1/2987) 0 * * Os_TE_48181 Chr9 19873738 19873739 + MPING 430 0.0072 (21/2916) 0 * * Os_TE_48166 Chr9 19871393 19871394 - RIRE3A_LTR 10580 0.0148 (44/2979) 0 * * Os_TE_48118 Chr9 19840849 19840850 + CASTAWAY 364 0.0007 (2/2719) 0 * * Os_TE_48109 Chr9 19838624 19838625 + ORSgTETNOOT00908 242 0.0018 (5/2799) 0 * * Os_TE_48106 Chr9 19837569 19837570 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_48105 Os_TE_48105 Chr9 19837565 19837564 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_48106 Os_TE_48078 Chr9 19828284 19828285 + SC-8_LTR 4951 0.0020 (6/2984) 0 * Os_TE_48077 Os_TE_48077 Chr9 19828280 19828279 - SC-8_LTR 4951 0.0020 (6/2981) 0 * Os_TE_48078 Os_TE_48013 Chr9 19795186 19795187 + ORSgTETNOOT01834 251 0.0168 (50/2978) 0 * * Os_TE_47987 Chr9 19783640 19783641 + RETROSAT4_LTR 13504 0.0003 (1/2978) 0 * Os_TE_47986 Os_TE_47986 Chr9 19783636 19783635 - RETROSAT4_LTR 13504 0.0003 (1/2978) 0 * Os_TE_47987 Os_TE_47973 Chr9 19778549 19778550 - TOS17LTR 138 0.0003 (1/2993) 0 * Os_TE_47972 Os_TE_47972 Chr9 19778545 19778544 + TOS17LTR 138 0.0003 (1/2995) 0 * Os_TE_47973 Os_TE_47941 Chr9 19750048 19750049 - COPIA2-LTR_OS 6433 0.0003 (1/2953) 0 * Os_TE_47940 Os_TE_47940 Chr9 19750044 19750043 + COPIA2-LTR_OS 6433 0.0003 (1/2945) 0 * Os_TE_47941 Os_TE_47932 Chr9 19746740 19746739 - TRUNCATOR 2918 0.0412 (122/2959) 0 * Os_TE_47931 Os_TE_47931 Chr9 19746739 19746740 + TRUNCATOR 2918 0.0462 (138/2984) 0 * Os_TE_47932 Os_TE_47920 Chr9 19739796 19739797 - SC-4_LTR 5218 0.0003 (1/2950) 0 * * Os_TE_47912 Chr9 19735854 19735855 - ORSiTERTOOT00396 5939 0.0017 (5/2932) 0 * Os_TE_47911 Os_TE_47911 Chr9 19735850 19735849 + ORSiTERTOOT00396 5939 0.0020 (6/2929) 0 * Os_TE_47912 Os_TE_47901 Chr9 19730850 19730851 + SC-8_LTR 4951 0.0003 (1/2948) 0 * * Os_TE_47846 Chr9 19709180 19709181 + YOUREN 286 0.0010 (3/2955) 0 * * Os_TE_47832 Chr9 19706606 19706605 + TWIF 586 0.0005 (1/2058) 0 * * Os_TE_47831 Chr9 19704859 19704858 + TNR2A 152 0.2015 (600/2978) 0 * * Os_TE_47830 Chr9 19704825 19704826 + CASTAWAY 364 0.1974 (586/2969) 0 * Os_TE_47829 Os_TE_47829 Chr9 19704823 19704822 - ORSgTEMT00600085 364 0.1802 (527/2924) 0 * Os_TE_47830 Os_TE_47807 Chr9 19682427 19682426 - GYPSY-A_LTR 8951 0.0044 (13/2932) 0 * * Os_TE_47781 Chr9 19671223 19671224 + INDITTO 263 0.0071 (19/2690) 0 * Os_TE_47780 Os_TE_47780 Chr9 19671221 19671220 - INDITTO 263 0.0069 (18/2625) 0 * Os_TE_47781 Os_TE_47764 Chr9 19668376 19668377 + ORSgTEMT00600272 361 0.0067 (20/2980) 0 * * Os_TE_47763 Chr9 19668222 19668221 - ORSgTEMT01602467 227 0.0077 (23/2977) 0 * Os_TE_47762 Os_TE_47762 Chr9 19668214 19668215 + ORSgTEMT01602083 237 0.0074 (22/2974) 0 * Os_TE_47763 Os_TE_47761 Chr9 19668156 19668157 - TESSBIG 4057 0.0078 (23/2961) 0 * Os_TE_47760 Os_TE_47760 Chr9 19668149 19668148 + TESSBIG 4057 0.0074 (22/2961) 0 * Os_TE_47761 Os_TE_47743 Chr9 19666488 19666487 + CLOUD-7 495 0.0007 (2/2845) 0 * * Os_TE_47739 Chr9 19665368 19665367 - ORSgTEMT00900965 216 0.0077 (23/2990) 0 * * Os_TE_47724 Chr9 19661205 19660948 - INDITTO 263 0.3392 (997/2939) 1 Intact * Os_TE_47708 Chr9 19657466 19657467 + CLOUD-6 508 0.0017 (5/2955) 0 * Os_TE_47707 Os_TE_47707 Chr9 19657457 19657456 + CLOUD-6 508 0.0017 (5/2954) 0 * Os_TE_47708 Os_TE_47693 Chr9 19652923 19652922 - TYPEM 227 0.0007 (2/2958) 0 * * Os_TE_47674 Chr9 19648382 19648383 + ORSgTEMT00501072 147 0.0082 (24/2920) 0 * * Os_TE_47659 Chr9 19638169 19638168 - STOWAWAY51_OS 246 0.0017 (5/2987) 0 * * Os_TE_47658 Chr9 19638166 19638167 - STOWAWAY51_OS 246 0.0020 (6/2979) 0 * Os_TE_47657 Os_TE_47657 Chr9 19638148 19638147 - ORSiTETNOOT00134 607 0.0007 (2/2978) 0 * Os_TE_47658 Os_TE_47629 Chr9 19620738 19620739 + SC-7_LTR 4431 0.0003 (1/2900) 0 * * Os_TE_47626 Chr9 19620062 19620063 - COPIA2-LTR_OS 6433 0.0013 (4/2979) 0 * * Os_TE_47624 Chr9 19619928 19619927 - COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * * Os_TE_47609 Chr9 19611485 19611486 - RETROSAT2LTR 12796 0.0084 (25/2994) 0 * Os_TE_47608 Os_TE_47608 Chr9 19611483 19611482 + RETROSAT2LTR 12796 0.0080 (24/2994) 0 * Os_TE_47609 Os_TE_47600 Chr9 19608049 19608048 + CASTAWAY 364 0.0369 (105/2845) 0 * * Os_TE_47569 Chr9 19596013 19596014 + TWIF 586 0.0044 (13/2984) 0 * * Os_TE_47558 Chr9 19592970 19592969 + AMYLTP 383 0.1494 (428/2864) 0 * * Os_TE_47556 Chr9 19590732 19590733 + ORSiTERTOOT00296 5553 0.0513 (153/2985) 0 * * Os_TE_47540 Chr9 19586540 19586539 - ORSgTEMT00100315 323 0.0003 (1/2925) 0 * * Os_TE_47526 Chr9 19579455 19579456 + OSTONOR1_LTR 6440 0.0003 (1/2975) 0 * * Os_TE_47521 Chr9 19576903 19576902 - DS-RICE2N 613 0.0055 (16/2892) 0 * * Os_TE_47518 Chr9 19576489 19576490 - OSTE24 683 0.0003 (1/2962) 0 * * Os_TE_47517 Chr9 19576319 19576320 + AMYLTP 383 0.0024 (7/2978) 0 * * Os_TE_47508 Chr9 19569043 19569042 + SZ-28LTR 262 0.0030 (9/2979) 0 * * Os_TE_47484 Chr9 19554555 19561061 + MDR2 6967 0.3282 (938/2858) 1 Intact * Os_TE_47471 Chr9 19550148 19550147 + COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * * Os_TE_47470 Chr9 19549660 19549659 - ORSgTEMT01400011 212 0.0030 (9/2984) 0 * Os_TE_47469 Os_TE_47469 Chr9 19549654 19549655 - ORSgTEMT01400006 213 0.0030 (9/2991) 0 * Os_TE_47470 Os_TE_47465 Chr9 19547019 19547020 - MPING 430 0.0027 (8/2958) 0 * Os_TE_47464 Os_TE_47464 Chr9 19547017 19547016 + MPING 430 0.0031 (8/2602) 0 * Os_TE_47465 Os_TE_47443 Chr9 19541228 19541229 - ORSgTEMT01400022 212 0.8540 (2557/2994) 0.93 * * Os_TE_47396 Chr9 19524630 19524629 - ORSgTETNOOT01930 140 0.0003 (1/2997) 0 * * Os_TE_47393 Chr9 19521772 19521771 + OLO24 345 0.6807 (2034/2988) 0 * * Os_TE_47390 Chr9 19520950 19520949 + COPIA2-LTR_OS 6433 0.0010 (3/2942) 0 * * Os_TE_47349 Chr9 19493108 19493107 - STOWAWAY51_OS 246 0.0003 (1/2918) 0 * Os_TE_47348 Os_TE_47348 Chr9 19493102 19493103 + STOWAWAY51_OS 246 0.0003 (1/2920) 0 * Os_TE_47349 Os_TE_47331 Chr9 19490423 19490422 + ORSgTETNOOT00908 242 0.0050 (15/2999) 0 * * Os_TE_47308 Chr9 19469576 19469575 - TYPEM 227 0.0010 (3/2980) 0 * * Os_TE_47302 Chr9 19469091 19469090 + ORSiTERTOOT00296 5553 0.0003 (1/2996) 0 * * Os_TE_47272 Chr9 19451887 19451888 + SZ-40LTR 2465 0.0010 (3/2990) 0 * Os_TE_47271 Os_TE_47271 Chr9 19451883 19451882 - GYPSY-A_LTR 8951 0.0010 (3/2984) 0 * Os_TE_47272 Os_TE_47269 Chr9 19451731 19451730 - COPI2_LTR 4733 0.0003 (1/2992) 0 * * Os_TE_47166 Chr9 19396986 19396987 + RIREX_LTR 8828 0.0003 (1/2936) 0 * Os_TE_47165 Os_TE_47165 Chr9 19396982 19396981 - RIREX_LTR 8828 0.0003 (1/2925) 0 * Os_TE_47166 Os_TE_47154 Chr9 19390672 19390673 - COPI2_LTR 4733 0.0013 (4/2997) 0 * * Os_TE_47147 Chr9 19387326 19387325 + ORSgTEMT00600229 360 0.6830 (2004/2934) 0 * * Os_TE_47134 Chr9 19376699 19370951 - SC-3_LTR 5748 0.3202 (959/2995) 1 Intact * Os_TE_47121 Chr9 19360642 19360641 - ORSgTEMT02400179 221 0.0007 (2/2987) 0 * * Os_TE_47115 Chr9 19355634 19355633 + RETROSAT4_LTR 13504 0.0177 (53/2991) 0 * * Os_TE_47083 Chr9 19333450 19333449 - OSCOPIA2_LTR 5476 0.0003 (1/2994) 0 * * Os_TE_46998 Chr9 19303111 19303110 - KRISPIE 956 0.0003 (1/2971) 0 * * Os_TE_46959 Chr9 19286348 19286349 - SINE03_OS 360 0.0003 (1/2915) 0 * * Os_TE_46954 Chr9 19283750 19283751 + ORSiTERTOOT00296 5553 0.0086 (25/2911) 0 * Os_TE_46953 Os_TE_46953 Chr9 19283746 19283745 - SC-3_LTR 5748 0.0087 (26/2988) 0 * Os_TE_46954 Os_TE_46950 Chr9 19279384 19279385 - RETRO2_LTR 12874 0.4680 (1388/2966) 0 * Os_TE_46949 Os_TE_46949 Chr9 19279380 19279379 + RETRO2_LTR 12874 0.4465 (1286/2880) 0 * Os_TE_46950 Os_TE_46936 Chr9 19274874 19274873 - ORSgTEMT01701254 154 0.0017 (5/2976) 0 * * Os_TE_46929 Chr9 19274074 19274073 - ORSgTEMT01702255 155 0.0017 (5/2949) 0 * Os_TE_46928 Os_TE_46928 Chr9 19274073 19274074 + ORSgTEMT01701591 154 0.0017 (5/2984) 0 * Os_TE_46929 Os_TE_46918 Chr9 19265756 19265757 - AMYLTP 383 0.0017 (5/2976) 0 * Os_TE_46917 Os_TE_46917 Chr9 19265748 19265747 + AMYLTP 383 0.0017 (5/2982) 0 * Os_TE_46918 Os_TE_46899 Chr9 19250137 19250136 + ORSgTEMT01600102 237 0.0003 (1/2983) 0 * * Os_TE_46897 Chr9 19247612 19247613 - SC-8_LTR 4951 0.0003 (1/2988) 0 * Os_TE_46896 Os_TE_46896 Chr9 19247608 19247607 + SC-8_LTR 4951 0.0003 (1/2991) 0 * Os_TE_46897 Os_TE_46895 Chr9 19246563 19246564 - ORSiTERTOOT00074 4935 0.0003 (1/2984) 0 * Os_TE_46894 Os_TE_46894 Chr9 19246559 19246558 + ORSiTERTOOT00074 4935 0.0003 (1/2980) 0 * Os_TE_46895 Os_TE_46889 Chr9 19236952 19236953 - SC-8_LTR 4951 0.0003 (1/2986) 0 * Os_TE_46888 Os_TE_46888 Chr9 19236948 19236947 + SC-8_LTR 4951 0.0003 (1/2989) 0 * Os_TE_46889 Os_TE_46876 Chr9 19232169 19232170 - RIREX_LTR 8828 0.0034 (10/2978) 0 * Os_TE_46875 Os_TE_46875 Chr9 19232165 19232164 + RIREX_LTR 8828 0.0034 (10/2975) 0 * Os_TE_46876 Os_TE_46838 Chr9 19202513 19202512 + ORSgTEMT01700715 134 0.2486 (743/2989) 0 * * Os_TE_46816 Chr9 19191928 19191927 + ORSgTETNOOT00908 242 0.0013 (4/2984) 0 * * Os_TE_46815 Chr9 19191895 19191896 + ORSgTETNOOT00323 125 0.2549 (756/2966) 0 * Os_TE_46814 Os_TE_46814 Chr9 19191893 19191892 - ORSgTETNOOT01930 140 0.2554 (757/2964) 0 * Os_TE_46815 Os_TE_46810 Chr9 19188528 19188529 + ORSgTEMT01601122 212 0.2545 (731/2872) 0 * * Os_TE_46800 Chr9 19183758 19183757 - ORSgTEMT02400246 177 0.4502 (1343/2983) 0 * Os_TE_46799 Os_TE_46799 Chr9 19183754 19183755 + ORSgTEMT02400041 225 0.5977 (1377/2304) 0 * Os_TE_46800 Os_TE_46794 Chr9 19179947 19178615 + MERMITE18E 1528 0.7635 (2273/2977) 1 Intact * Os_TE_46787 Chr9 19177411 19177258 + ORSgTEMT01700923 149 0.7652 (2288/2990) 1 Intact Os_TE_46784 Os_TE_46784 Chr9 19177255 19177406 - STOWAWAY50_OS 174 0.7608 (2268/2981) 1 Intact Os_TE_46787 Os_TE_46782 Chr9 19177112 19176821 + YOUREN 286 0.7621 (2278/2989) 1 Intact Os_TE_46777 Os_TE_46777 Chr9 19176818 19177111 + ORSgTEMT05200196 285 0.7629 (2278/2986) 1 Intact Os_TE_46782 Os_TE_46776 Chr9 19176430 19176429 + TNR2A 152 0.0017 (5/2986) 0 * * Os_TE_46767 Chr9 19172516 19172517 + RETROSAT4_LTR 13504 0.1860 (392/2107) 0 * Os_TE_46766 Os_TE_46766 Chr9 19172512 19172511 - RETROSAT4_LTR 13504 0.2405 (538/2237) 0 * Os_TE_46767 Os_TE_46761 Chr9 19169570 19169571 + COPIA2-LTR_OS 6433 0.0013 (3/2295) 0 * Os_TE_46760 Os_TE_46760 Chr9 19169566 19169565 - COPIA2-LTR_OS 6433 0.0013 (3/2292) 0 * Os_TE_46761 Os_TE_46739 Chr9 19165136 19165137 - ORSgTEMT02400246 177 0.0007 (2/2981) 0 * * Os_TE_46724 Chr9 19160585 19160586 - AMYLTP 383 0.0003 (1/2926) 0 * Os_TE_46723 Os_TE_46723 Chr9 19160576 19160575 + AMYLTP 383 0.0003 (1/2902) 0 * Os_TE_46724 Os_TE_46704 Chr9 19151432 19151433 - Cassandra_OS-LTR 764 0.0003 (1/2978) 0 * Os_TE_46703 Os_TE_46703 Chr9 19151428 19151427 + Cassandra_OS-LTR 764 0.0003 (1/2985) 0 * Os_TE_46704 Os_TE_46680 Chr9 19132181 19132182 + CASLET 354 0.2510 (747/2976) 0 * Os_TE_46679 Os_TE_46679 Chr9 19132179 19132178 - CASLET 354 0.2364 (689/2914) 0 * Os_TE_46680 Os_TE_46667 Chr9 19121784 19121785 - ORSgTETN00200001 10994 0.6709 (1998/2978) 0 * * Os_TE_46658 Chr9 19113355 19113356 - TRUNCATOR2_LTR 2904 0.2653 (777/2929) 0 * * Os_TE_46610 Chr9 19095375 19095376 + RETROSAT4_LTR 13504 0.0017 (5/2922) 0 * Os_TE_46609 Os_TE_46609 Chr9 19095371 19095370 - SZ-35LTR 3853 0.0017 (5/2936) 0 * Os_TE_46610 Os_TE_46527 Chr9 19065677 19065678 + ORSgTEMT00600272 361 0.0138 (41/2973) 0 * Os_TE_46526 Os_TE_46526 Chr9 19065672 19065671 - ORSgTEMT00600478 361 0.0135 (40/2973) 0 * Os_TE_46527 Os_TE_46459 Chr9 19028530 19028529 + ORSgTEMT01601591 242 0.0003 (1/2988) 0 * Os_TE_46458 Os_TE_46458 Chr9 19028527 19028528 + ORSgTEMT01601591 242 0.0003 (1/2993) 0 * Os_TE_46459 Os_TE_46456 Chr9 19027705 19027704 + ORSiTERTOOT00396 5939 0.0003 (1/2942) 0 * * Os_TE_46427 Chr9 19020876 19020875 + ORSgTEMT02400009 192 0.0020 (6/2987) 0 * Os_TE_46426 Os_TE_46426 Chr9 19020875 19020876 - TYPEM 227 0.0020 (6/2980) 0 * Os_TE_46427 Os_TE_46422 Chr9 19019119 19019120 - STOWAWAY8_OS 259 0.0018 (5/2764) 0 * * Os_TE_46411 Chr9 19015244 19015243 - ORSgTEMT01701302 154 0.0017 (5/2998) 0 * Os_TE_46410 Os_TE_46410 Chr9 19015241 19015242 + ORSgTEMT01701104 154 0.0020 (6/2999) 0 * Os_TE_46411 Os_TE_46333 Chr9 18996156 18996155 + SZ-37_LTR 12001 0.0017 (5/2993) 0 * * Os_TE_46328 Chr9 18994190 18994191 - COPIA2-LTR_OS 6433 0.0003 (1/2986) 0 * * Os_TE_46313 Chr9 18988171 18988170 + STOWAWAY51_OS 246 0.0003 (1/2996) 0 * * Os_TE_46303 Chr9 18982909 18982910 - ORSgTEMT01601208 238 0.0020 (6/2983) 0 * * Os_TE_46287 Chr9 18973192 18973193 + ORSiTERTOOT00226 792 0.0003 (1/2948) 0 * Os_TE_46286 Os_TE_46286 Chr9 18973188 18973187 - SZ-22_LTR 4403 0.0003 (1/2949) 0 * Os_TE_46287 Os_TE_46270 Chr9 18964079 18964080 + TWIFB1 3737 0.0003 (1/2969) 0 * * Os_TE_46259 Chr9 18953436 18953435 + ORSgTEMT00100531 325 0.0007 (2/2993) 0 * Os_TE_46258 Os_TE_46258 Chr9 18953435 18953436 + NDNA1TNA_OS 334 0.0007 (2/2993) 0 * Os_TE_46259 Os_TE_46248 Chr9 18947248 18946635 + DS-RICE2N 613 0.3665 (1098/2996) 1 Intact Os_TE_46247 Os_TE_46247 Chr9 18946635 18947248 - DS-RICE2N 613 0.3649 (1091/2990) 1 Intact Os_TE_46248 Os_TE_46233 Chr9 18936809 18936810 - RIRE3_LTR 12054 0.0003 (1/2997) 0 * Os_TE_46232 Os_TE_46232 Chr9 18936805 18936804 - RIRE3_LTR 12054 0.0003 (1/2999) 0 * Os_TE_46233 Os_TE_46228 Chr9 18935711 18935710 - TRUNCATOR2_LTR 2904 0.4205 (1233/2932) 0 * * Os_TE_46218 Chr9 18930884 18930885 - STOWAWAY18_OS 216 0.0017 (5/2948) 0 * * Os_TE_46217 Chr9 18930801 18930800 + STOWAWAY51_OS 246 0.0074 (22/2960) 0 * Os_TE_46216 Os_TE_46216 Chr9 18930795 18930796 + ORSgTEMT01601591 242 0.0074 (22/2957) 0 * Os_TE_46217 Os_TE_46210 Chr9 18929879 18929880 - NDNA1TNA_OS 334 0.0007 (2/2973) 0 * * Os_TE_46151 Chr9 18921860 18921861 - STOWAWAY51_OS 246 0.0003 (1/2969) 0 * * Os_TE_46146 Chr9 18919991 18919992 - MPING 430 0.0003 (1/2997) 0 * Os_TE_46145 Os_TE_46145 Chr9 18919989 18919988 + MPING 430 0.0003 (1/2990) 0 * Os_TE_46146 Os_TE_46144 Chr9 18918185 18918184 + ORSgTETNOOT00908 242 0.0017 (5/2957) 0 * * Os_TE_46138 Chr9 18914247 18914248 - TESS 244 0.0003 (1/2935) 0 * Os_TE_46137 Os_TE_46137 Chr9 18914240 18914239 + TESS 244 0.0003 (1/2928) 0 * Os_TE_46138 Os_TE_46134 Chr9 18913831 18913832 - COPIA2-LTR_OS 6433 0.0123 (34/2764) 0 * Os_TE_46133 Os_TE_46133 Chr9 18913827 18913826 + COPIA2-LTR_OS 6433 0.0093 (26/2784) 0 * Os_TE_46134 Os_TE_46132 Chr9 18913601 18913600 - TESS 244 0.0003 (1/2937) 0 * * Os_TE_46129 Chr9 18911899 18911898 + ATLANTYS-LTR_OS 13740 0.6326 (1882/2975) 0 * * Os_TE_46103 Chr9 18903480 18903481 - RIREX_LTR 8828 0.0003 (1/2995) 0 * Os_TE_46102 Os_TE_46102 Chr9 18903476 18903475 + RIREX_LTR 8828 0.0003 (1/2992) 0 * Os_TE_46103 Os_TE_46099 Chr9 18902900 18902901 - ORSgTERT00201216 11284 0.0384 (114/2971) 0 * * Os_TE_46089 Chr9 18902025 18902026 + COPIA2-LTR_OS 6433 0.0017 (5/2866) 0 * * Os_TE_46078 Chr9 18898378 18898379 - RETRO2_LTR 12874 0.0418 (118/2820) 0 * Os_TE_46077 Os_TE_46077 Chr9 18898374 18898373 + RETRO2_LTR 12874 0.0301 (84/2790) 0 * Os_TE_46078 Os_TE_46055 Chr9 18888469 18888470 - MPING 430 0.0003 (1/2994) 0 * Os_TE_46054 Os_TE_46054 Chr9 18888467 18888466 + MPING 430 0.0003 (1/2990) 0 * Os_TE_46055 Os_TE_46029 Chr9 18879549 18879548 - ORSgTEMT02400179 221 0.0010 (3/2984) 0 * Os_TE_46028 Os_TE_46028 Chr9 18879547 18879548 - ORSgTEMT02400092 225 0.0017 (5/2984) 0 * Os_TE_46029 Os_TE_46025 Chr9 18878763 18878764 - STOWAWAY51_OS 246 0.0157 (47/2986) 0 * * Os_TE_46002 Chr9 18863107 18863108 - RETROSAT2LTR 12796 0.0017 (5/2994) 0 * Os_TE_46001 Os_TE_46001 Chr9 18863105 18863104 + RETROSAT2LTR 12796 0.0017 (5/2993) 0 * Os_TE_46002 Os_TE_45978 Chr9 18857933 18857934 - COPI2_LTR 4733 0.0003 (1/2989) 0 * * Os_TE_45977 Chr9 18857670 18857671 - INDITTO 263 0.0017 (5/2987) 0 * Os_TE_45976 Os_TE_45976 Chr9 18857668 18857667 + INDITTO 263 0.0013 (4/2986) 0 * Os_TE_45977 Os_TE_45956 Chr9 18842963 18842964 + ORSiCMCM00100019 2717 0.0100 (30/2987) 0 * * Os_TE_45881 Chr9 18805432 18805433 - RETRO1_LTR 8314 0.0017 (5/2985) 0 * Os_TE_45880 Os_TE_45880 Chr9 18805428 18805427 + RETRO2A_LTR 12895 0.0017 (5/2976) 0 * Os_TE_45881 Os_TE_45863 Chr9 18796700 18796699 - STOWAWAY1_OS 149 0.0017 (5/2984) 0 * * Os_TE_45862 Chr9 18796623 18796622 - TYPEM 227 0.0569 (169/2968) 0 * Os_TE_45861 Os_TE_45861 Chr9 18796620 18796621 - ORSgTEMT02400246 177 0.0585 (174/2972) 0 * Os_TE_45862 Os_TE_45850 Chr9 18792857 18792856 - ORSgTEMT00900005 240 0.0018 (5/2818) 0 * Os_TE_45849 Os_TE_45849 Chr9 18792853 18792854 - ORSgTEMT00901723 248 0.0018 (5/2825) 0 * Os_TE_45850 Os_TE_45825 Chr9 18783701 18783702 + F569 228 0.0003 (1/2999) 0 * Os_TE_45824 Os_TE_45824 Chr9 18783699 18783698 - F569 228 0.0003 (1/2997) 0 * Os_TE_45825 Os_TE_45809 Chr9 18776835 18776836 + RETROSAT4_LTR 13504 0.5095 (1388/2724) 0 * Os_TE_45808 Os_TE_45808 Chr9 18776831 18776830 - SZ-35LTR 3853 0.5552 (1619/2916) 0 * Os_TE_45809 Os_TE_45805 Chr9 18776124 18776123 + DITAILA 257 0.0017 (5/2996) 0 * Os_TE_45804 Os_TE_45804 Chr9 18776120 18776121 - DITAILA 257 0.0017 (5/2995) 0 * Os_TE_45805 Os_TE_45786 Chr9 18767244 18767243 - MPING 430 0.0003 (1/2959) 0 * * Os_TE_45773 Chr9 18762844 18762845 + COPIA2-LTR_OS 6433 0.0003 (1/2981) 0 * * Os_TE_45771 Chr9 18762231 18762232 + COPI2_LTR 4733 0.0003 (1/2993) 0 * Os_TE_45770 Os_TE_45770 Chr9 18762227 18762226 - COPI2_LTR 4733 0.0003 (1/2992) 0 * Os_TE_45771 Os_TE_45763 Chr9 18758393 18758392 - STOWAWAY51_OS 246 0.0003 (1/2993) 0 * Os_TE_45762 Os_TE_45762 Chr9 18758387 18758388 + STOWAWAY51_OS 246 0.0003 (1/2981) 0 * Os_TE_45763 Os_TE_45666 Chr9 18713600 18713601 - COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_45665 Os_TE_45665 Chr9 18713596 18713595 + COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_45666 Os_TE_45642 Chr9 18704407 18704408 + RETROSAT2LTR 12796 0.5667 (1687/2977) 0 * Os_TE_45641 Os_TE_45641 Chr9 18704405 18704404 - RETROSAT2LTR 12796 0.5719 (1710/2990) 0 * Os_TE_45642 Os_TE_45631 Chr9 18699815 18699814 - MuDR2_OS 6770 0.5479 (1550/2829) 0 * * Os_TE_45571 Chr9 18666692 18666693 - ORSgTETN00200001 10994 0.0007 (2/2977) 0 * Os_TE_45570 Os_TE_45570 Chr9 18666690 18666689 + SPMLIKE 10989 0.0007 (2/2977) 0 * Os_TE_45571 Os_TE_45507 Chr9 18619809 18619810 - ORSiTETNOOT00216 3569 0.0003 (1/2992) 0 * Os_TE_45506 Os_TE_45506 Chr9 18619802 18619801 + TWIFBIG 3567 0.0003 (1/2994) 0 * Os_TE_45507 Os_TE_45488 Chr9 18610722 18610723 + MPING 430 0.0003 (1/2996) 0 * Os_TE_45487 Os_TE_45487 Chr9 18610720 18610719 - MPING 430 0.0003 (1/2994) 0 * Os_TE_45488 Os_TE_45481 Chr9 18608790 18608791 + COPIA2-LTR_OS 6433 0.0230 (67/2915) 0 * Os_TE_45480 Os_TE_45480 Chr9 18608786 18608785 - COPIA2-LTR_OS 6433 0.0250 (73/2923) 0 * Os_TE_45481 Os_TE_45454 Chr9 18595032 18595033 + MPING 430 0.0003 (1/2994) 0 * Os_TE_45453 Os_TE_45453 Chr9 18595030 18595029 - MPING 430 0.0003 (1/2992) 0 * Os_TE_45454 Os_TE_45447 Chr9 18594454 18594455 + OSTONOR1_LTR 6440 0.0003 (1/2976) 0 * * Os_TE_45404 Chr9 18582546 18582547 + INDITTO 263 0.0140 (42/2994) 0 * Os_TE_45403 Os_TE_45403 Chr9 18582544 18582543 - INDITTO 263 0.0137 (41/2992) 0 * Os_TE_45404 Os_TE_45376 Chr9 18569411 18569412 - SZ-55_LTR 10318 0.0003 (1/2993) 0 * Os_TE_45375 Os_TE_45375 Chr9 18569407 18569406 + SZ-55_LTR 10318 0.0003 (1/2988) 0 * Os_TE_45376 Os_TE_45362 Chr9 18563671 18563672 - SZ-22_LTR 4403 0.0003 (1/2903) 0 * Os_TE_45361 Os_TE_45361 Chr9 18563667 18563666 + ORSiTERTOOT00226 792 0.0003 (1/2920) 0 * Os_TE_45362 Os_TE_45347 Chr9 18560345 18560346 + COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_45346 Os_TE_45346 Chr9 18560341 18560340 - COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_45347 Os_TE_45324 Chr9 18554720 18554721 + Cassandra_OS-LTR 764 0.0003 (1/2974) 0 * * Os_TE_45287 Chr9 18514464 18514465 - NDNA1TNA_OS 334 0.0003 (1/2990) 0 * * Os_TE_45246 Chr9 18506370 18506369 + STOWAWAY51_OS 246 0.0010 (3/2988) 0 * Os_TE_45245 Os_TE_45245 Chr9 18506367 18506368 - STOWAWAY51_OS 246 0.0013 (4/2981) 0 * Os_TE_45246 Os_TE_45229 Chr9 18500498 18500499 + ORSgTETNOOT00908 242 0.0003 (1/2988) 0 * * Os_TE_45221 Chr9 18493868 18493869 + SC-8_LTR 4951 0.0003 (1/2998) 0 * Os_TE_45220 Os_TE_45220 Chr9 18493864 18493863 - SC-8_LTR 4951 0.0003 (1/2997) 0 * Os_TE_45221 Os_TE_45219 Chr9 18493421 18493422 + COPI2_LTR 4733 0.0003 (1/2998) 0 * * Os_TE_45194 Chr9 18476697 18476698 - ORSiTETNOOT00199 3501 0.0007 (2/2978) 0 * Os_TE_45193 Os_TE_45193 Chr9 18476690 18476689 + TWIFBIG 3567 0.0007 (2/2975) 0 * Os_TE_45194 Os_TE_45136 Chr9 18451366 18451367 - ORSgTETNOOT02565 240 0.0014 (2/1411) -1 * * Os_TE_45085 Chr9 18421405 18421406 - COPIA2-LTR_OS 6433 0.0037 (11/2979) 0 * Os_TE_45084 Os_TE_45084 Chr9 18421401 18421400 + COPIA2-LTR_OS 6433 0.0030 (9/2975) 0 * Os_TE_45085 Os_TE_45078 Chr9 18417418 18417419 - INDITTO 263 0.0007 (2/2980) 0 * * Os_TE_45061 Chr9 18415408 18415409 + INDITTO 263 0.0003 (1/2971) 0 * * Os_TE_45057 Chr9 18412895 18412896 + TWIF 586 0.0007 (2/2988) 0 * Os_TE_45056 Os_TE_45056 Chr9 18412888 18412887 - ORSiTETNOOT00200 3563 0.0007 (2/2988) 0 * Os_TE_45057 Os_TE_45039 Chr9 18401413 18401414 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * * Os_TE_45033 Chr9 18396338 18396339 + ORSiTERTOOT00296 5553 0.0003 (1/2975) 0 * * Os_TE_45022 Chr9 18390687 18390688 - SC-8_LTR 4951 0.0007 (2/2996) 0 * Os_TE_45021 Os_TE_45021 Chr9 18390683 18390682 + SC-8_LTR 4951 0.0007 (2/2994) 0 * Os_TE_45022 Os_TE_45020 Chr9 18390217 18390218 + ORSiTERTOOT00296 5553 0.0007 (2/2981) 0 * Os_TE_45019 Os_TE_45019 Chr9 18390213 18390212 - SC-3_LTR 5748 0.0007 (2/2981) 0 * Os_TE_45020 Os_TE_45018 Chr9 18389368 18389369 - SC-8_LTR 4951 0.0003 (1/2984) 0 * Os_TE_45017 Os_TE_45017 Chr9 18389364 18389363 + SC-8_LTR 4951 0.0003 (1/2981) 0 * Os_TE_45018 Os_TE_44999 Chr9 18383787 18383788 - SC-3_LTR 5748 0.0010 (3/2998) 0 * Os_TE_44998 Os_TE_44998 Chr9 18383783 18383782 + ORSiTERTOOT00296 5553 0.0010 (3/2998) 0 * Os_TE_44999 Os_TE_44984 Chr9 18375278 18375277 - INDITTO 263 0.0013 (4/2996) 0 * * Os_TE_44983 Chr9 18375227 18375228 - MPING 430 0.0020 (6/2993) 0 * Os_TE_44982 Os_TE_44982 Chr9 18375225 18375224 + MPING 430 0.0020 (6/2993) 0 * Os_TE_44983 Os_TE_44966 Chr9 18367971 18367972 - RETRO2_LTR 12874 0.0040 (12/2993) 0 * Os_TE_44965 Os_TE_44965 Chr9 18367967 18367966 + ORSgTERTOOT00009 12852 0.0037 (11/2990) 0 * Os_TE_44966 Os_TE_44963 Chr9 18367263 18367262 - SC-3_LTR 5748 0.0003 (1/2940) 0 * * Os_TE_44957 Chr9 18365712 18365713 + ORSiTERTOOT00296 5553 0.0003 (1/2996) 0 * * Os_TE_44946 Chr9 18357332 18357333 - MDR2 6967 0.0090 (27/2987) 0 * Os_TE_44945 Os_TE_44945 Chr9 18357324 18357323 + MDR2 6967 0.0100 (30/2986) 0 * Os_TE_44946 Os_TE_44937 Chr9 18355876 18355877 + COPIA2-LTR_OS 6433 0.0003 (1/2946) 0 * * Os_TE_44816 Chr9 18326441 18326442 + COPIA2-LTR_OS 6433 0.0003 (1/2969) 0 * Os_TE_44815 Os_TE_44815 Chr9 18326437 18326436 - COPIA2-LTR_OS 6433 0.0003 (1/2965) 0 * Os_TE_44816 Os_TE_44793 Chr9 18316673 18316672 + COPIA2-LTR_OS 6433 0.0007 (2/2997) 0 * * Os_TE_44792 Chr9 18315160 18315161 + MPING 430 0.0027 (8/2926) 0 * Os_TE_44791 Os_TE_44791 Chr9 18315158 18315157 - MPING 430 0.0024 (7/2913) 0 * Os_TE_44792 Os_TE_44780 Chr9 18311766 18311767 + TELIA 141 0.0003 (1/2991) 0 * * Os_TE_44753 Chr9 18303574 18303575 - SC-8_LTR 4951 0.0003 (1/2974) 0 * * Os_TE_44750 Chr9 18303141 18303142 - SC-8_LTR 4951 0.0081 (24/2977) 0 * * Os_TE_44747 Chr9 18298545 18298546 - SC-3_LTR 5748 0.0003 (1/2979) 0 * Os_TE_44746 Os_TE_44746 Chr9 18298541 18298540 + ORSiTERTOOT00296 5553 0.0003 (1/2981) 0 * Os_TE_44747 Os_TE_44708 Chr9 18276778 18276779 + RETRO1_LTR 8314 0.0007 (2/2998) 0 * * Os_TE_44674 Chr9 18265040 18265039 + ORSiTERTOOT00088 856 0.4997 (1494/2990) 0.91 * * Os_TE_44669 Chr9 18263212 18263213 + GYPSY-A_LTR 8951 0.0017 (5/2994) 0 * Os_TE_44668 Os_TE_44668 Chr9 18263208 18263207 - SZ-40LTR 2465 0.0017 (5/2995) 0 * Os_TE_44669 Os_TE_44634 Chr9 18255992 18255993 - INDITTO 263 0.0003 (1/2918) 0 * Os_TE_44633 Os_TE_44633 Chr9 18255990 18255989 + INDITTO 263 0.0003 (1/2934) 0 * Os_TE_44634 Os_TE_44599 Chr9 18247012 18247013 + RETRO2A_LTR 12895 0.0095 (27/2844) 0 * * Os_TE_44597 Chr9 18246057 18245795 + INDITTO 263 0.5037 (1507/2992) 1 Intact Os_TE_44595 Os_TE_44595 Chr9 18245795 18246057 - INDITTO 263 0.5025 (1503/2991) 1 Intact Os_TE_44597 Os_TE_44528 Chr9 18207209 18207210 - SZ-55_LTR 10318 0.0003 (1/2895) 0 * Os_TE_44527 Os_TE_44527 Chr9 18207205 18207204 + SZ-55_LTR 10318 0.0003 (1/2903) 0 * Os_TE_44528 Os_TE_44522 Chr9 18206686 18206687 - HARB-1_OS 5166 0.0003 (1/2963) 0 * * Os_TE_44513 Chr9 18202111 18202112 + SZ-67LTR 1540 0.6314 (1872/2965) 0 * * Os_TE_44511 Chr9 18201089 18201090 - STOWAWAY44_OS 240 0.0007 (2/2986) 0 * * Os_TE_44509 Chr9 18200797 18200562 + TOUNJ-30 377 0.3760 (1120/2979) 1 Intact * Os_TE_44496 Chr9 18196597 18196598 + RIREX_LTR 8828 0.0003 (1/2997) 0 * Os_TE_44495 Os_TE_44495 Chr9 18196593 18196592 - RIREX_LTR 8828 0.0003 (1/2995) 0 * Os_TE_44496 Os_TE_44490 Chr9 18195008 18188848 - OSLINE1_2 6317 0.3262 (977/2995) 1 Intact * Os_TE_44467 Chr9 18182673 18182672 - ORSiTERTOOT00089 329 0.0007 (2/2917) 0 * * Os_TE_44448 Chr9 18170631 18170630 + COPI2_LTR 4733 0.0003 (1/2965) 0 * * Os_TE_44421 Chr9 18161935 18161673 + ORSgTETNOOT02316 263 0.3275 (977/2983) 1 Intact Os_TE_44418 Os_TE_44418 Chr9 18161673 18161935 - INDITTO 263 0.3293 (985/2991) 1 Intact Os_TE_44421 Os_TE_44417 Chr9 18161114 18161115 - ORSgTERT00201216 11284 0.0040 (12/2996) 0 * Os_TE_44416 Os_TE_44416 Chr9 18161110 18161109 - RIRE2_LTR 11306 0.0043 (13/2998) 0 * Os_TE_44417 Os_TE_44411 Chr9 18155404 18155405 + ORSgTETNOOT00908 242 0.0003 (1/2980) 0 * * Os_TE_44363 Chr9 18130385 18130386 - TYPEM 227 0.0138 (41/2972) 0 * Os_TE_44362 Os_TE_44362 Chr9 18130384 18130383 - ORSgTEMT02400179 221 0.0135 (40/2970) 0 * Os_TE_44363 Os_TE_44355 Chr9 18128066 18128067 + MPING 430 0.0003 (1/2993) 0 * Os_TE_44354 Os_TE_44354 Chr9 18128064 18128063 - MPING 430 0.0003 (1/2989) 0 * Os_TE_44355 Os_TE_44347 Chr9 18122198 18122199 + AMYLTP 383 0.0017 (5/2996) 0 * Os_TE_44346 Os_TE_44346 Chr9 18122190 18122189 - AMYLTP 383 0.0017 (5/2996) 0 * Os_TE_44347 Os_TE_44343 Chr9 18120322 18114729 - SC-3_LTR 5748 0.3363 (977/2905) 1 Intact Os_TE_44342 Os_TE_44342 Chr9 18114581 18120322 + ORSiTERTOOT00296 5553 0.3246 (939/2893) 1 Intact Os_TE_44343 Os_TE_44310 Chr9 18090202 18090201 - SZ-37_LTR 12001 0.0003 (1/2902) 0 * * Os_TE_44300 Chr9 18084747 18084746 - RIREX_LTR 8828 0.0055 (16/2917) 0 * * Os_TE_44299 Chr9 18083974 18083975 - RIREX_LTR 8828 0.1279 (374/2925) 0 * Os_TE_44298 Os_TE_44298 Chr9 18083970 18083969 + RIREX_LTR 8828 0.1272 (372/2925) 0 * Os_TE_44299 Os_TE_44296 Chr9 18082373 18068583 + ENSPM5_OS 9581 0.2675 (763/2852) 1 Intact Os_TE_44292 Os_TE_44292 Chr9 18068582 18082373 - ENSPM6_OS 9815 0.3073 (918/2987) 1 Intact Os_TE_44296 Os_TE_44290 Chr9 18066741 18066742 + RETROSAT4_LTR 13504 0.0007 (2/2995) 0 * Os_TE_44289 Os_TE_44289 Chr9 18066737 18066736 - SZ-35LTR 3853 0.0007 (2/2994) 0 * Os_TE_44290 Os_TE_44282 Chr9 18064704 18064705 - RETROSAT4_LTR 13504 0.0003 (1/2998) 0 * * Os_TE_44274 Chr9 18061636 18061637 - RETROSAT4_LTR 13504 0.0010 (3/2992) 0 * * Os_TE_44247 Chr9 18052244 18052245 - SC-8_LTR 4951 0.0003 (1/2868) 0 * Os_TE_44246 Os_TE_44246 Chr9 18052240 18052239 + SC-8_LTR 4951 0.0004 (1/2847) 0 * Os_TE_44247 Os_TE_44243 Chr9 18051430 18051431 - SZ-35LTR 3853 0.5256 (1456/2770) 0 * * Os_TE_44231 Chr9 18047116 18047117 + ORSgTETNOOT00908 242 0.0117 (35/2997) 0 * Os_TE_44230 Os_TE_44230 Chr9 18047114 18047113 + ORSgTETNOOT00908 242 0.0110 (33/2996) 0 * Os_TE_44231 Os_TE_44224 Chr9 18043943 18043944 - MPING 430 0.0004 (1/2854) 0 * Os_TE_44223 Os_TE_44223 Chr9 18043941 18043940 + MPING 430 0.0004 (1/2744) 0 * Os_TE_44224 Os_TE_44212 Chr9 18040838 18040837 - ORSgTEMT00500454 145 0.0011 (3/2696) 0 * * Os_TE_44190 Chr9 18028768 18028769 - COPIA2-LTR_OS 6433 0.0014 (4/2919) 0 * Os_TE_44189 Os_TE_44189 Chr9 18028764 18028763 + COPIA2-LTR_OS 6433 0.0014 (4/2925) 0 * Os_TE_44190 Os_TE_44187 Chr9 18027444 18027445 - SZ-35LTR 3853 0.0093 (28/2995) 0 * Os_TE_44186 Os_TE_44186 Chr9 18027440 18027439 + RETROSAT4_LTR 13504 0.0090 (27/2996) 0 * Os_TE_44187 Os_TE_44181 Chr9 18025783 18025784 - ORSgTETN00200001 10994 0.0104 (31/2972) 0 * Os_TE_44180 Os_TE_44180 Chr9 18025781 18025780 + SPMLIKE 10989 0.0114 (34/2972) 0 * Os_TE_44181 Os_TE_44157 Chr9 18013196 18013195 - ORSiTETNOOT00134 607 0.0003 (1/2986) 0 * * Os_TE_44152 Chr9 18009990 18009989 + ORSgTEMT01601591 242 0.0007 (2/2989) 0 * * Os_TE_44148 Chr9 18009608 18009609 + ORSiTERTOOT00226 792 0.0003 (1/2994) 0 * * Os_TE_44133 Chr9 18001328 18001329 + HATORY 3570 0.1023 (304/2971) 0 * Os_TE_44132 Os_TE_44132 Chr9 18001319 18001318 - HATORY 3570 0.1085 (324/2986) 0 * Os_TE_44133 Os_TE_44128 Chr9 17999564 17999563 + ORSgTETNOOT01998 254 0.0003 (1/2979) 0 * * Os_TE_44104 Chr9 17994927 17994928 - SZ-22_LTR 4403 0.0003 (1/2986) 0 * Os_TE_44103 Os_TE_44103 Chr9 17994923 17994922 + ORSiTERTOOT00226 792 0.0003 (1/2983) 0 * Os_TE_44104 Os_TE_44094 Chr9 17990879 17994547 + RETROSAT4_LTR 13504 0.8843 (2385/2697) 1 Solo_LTR * Os_TE_44093 Chr9 17990289 17990290 - ORSiTERTOOT00301 9654 0.0208 (11/528) -1 * * Os_TE_44054 Chr9 17974959 17973803 + CLOUD-4 520 0.7599 (962/1266) 1 Intact * Os_TE_44038 Chr9 17962902 17962903 + CASTAWAY-3 314 0.0003 (1/2997) 0 * * Os_TE_44016 Chr9 17957235 17957234 - GLUTEL1LIKE 273 0.0010 (3/2882) 0 * * Os_TE_43999 Chr9 17954449 17954450 - ORSgTEMT02400179 221 0.0017 (5/2870) 0 * Os_TE_43998 Os_TE_43998 Chr9 17954445 17954444 + ORSgTEMT02400054 220 0.0021 (6/2889) 0 * Os_TE_43999 Os_TE_43982 Chr9 17948137 17948138 + MuDR3_OS 8604 0.5832 (1725/2958) 0 * Os_TE_43981 Os_TE_43981 Chr9 17948129 17948128 - MuDR3_OS 8604 0.5694 (1640/2880) 0 * Os_TE_43982 Os_TE_43975 Chr9 17941578 17941579 - COPI2_LTR 4733 0.4914 (1432/2914) 0 * Os_TE_43974 Os_TE_43974 Chr9 17941574 17941573 + COPI2_LTR 4733 0.4961 (1451/2925) 0 * Os_TE_43975 Os_TE_43944 Chr9 17935843 17935844 - HARB-1_OS 5166 0.0003 (1/2991) 0 * Os_TE_43943 Os_TE_43943 Chr9 17935841 17935840 + HARB-1_OS 5166 0.0003 (1/2994) 0 * Os_TE_43944 Os_TE_43892 Chr9 17912532 17912533 - RIRE2_LTR 11306 0.0010 (3/2996) 0 * Os_TE_43891 Os_TE_43891 Chr9 17912528 17912527 + RIRE2_LTR 11306 0.0010 (3/2996) 0 * Os_TE_43892 Os_TE_43890 Chr9 17910390 17910391 - ORSgTEMT00500095 150 0.1018 (305/2995) 0 * * Os_TE_43885 Chr9 17907916 17908225 + STOLAB 312 0.4271 (1278/2992) 1 Intact * Os_TE_43883 Chr9 17906554 17906555 + RIREX_LTR 8828 0.0003 (1/2989) 0 * Os_TE_43882 Os_TE_43882 Chr9 17906550 17906549 - RIREX_LTR 8828 0.0003 (1/2991) 0 * Os_TE_43883 Os_TE_43874 Chr9 17901328 17901327 - INDITTO 263 0.0034 (10/2985) 0 * * Os_TE_43815 Chr9 17871876 17871875 - SZ-22_LTR 4403 0.0077 (23/2972) 0 * * Os_TE_43776 Chr9 17847341 17847342 + ORSiTERTOOT00226 792 0.0007 (2/2918) 0 * Os_TE_43775 Os_TE_43775 Chr9 17847337 17847336 - SZ-22_LTR 4403 0.0007 (2/2919) 0 * Os_TE_43776 Os_TE_43755 Chr9 17841065 17841064 - RIREX_LTR 8828 0.0004 (1/2847) 0 * * Os_TE_43751 Chr9 17838942 17838943 + ORSiTERTOOT00028 8600 0.0004 (1/2786) 0 * Os_TE_43750 Os_TE_43750 Chr9 17838938 17838937 - TRUNCATOR2_LTR 2904 0.0004 (1/2788) 0 * Os_TE_43751 Os_TE_43746 Chr9 17838515 17838514 + SINE1OS 127 0.0003 (1/2993) 0 * * Os_TE_43709 Chr9 17811047 17814912 + RETROSAT4_LTR 13504 0.3376 (685/2029) 1 Solo_LTR * Os_TE_43697 Chr9 17809061 17809060 + ORSgTEMT01601591 242 0.0007 (2/2986) 0 * * Os_TE_43664 Chr9 17792761 17792760 - CLOUD 734 0.0017 (5/2956) 0 * * Os_TE_43661 Chr9 17790098 17790099 + RIREX_LTR 8828 0.0003 (1/2986) 0 * Os_TE_43660 Os_TE_43660 Chr9 17790094 17790093 - RIREX_LTR 8828 0.0003 (1/2989) 0 * Os_TE_43661 Os_TE_43637 Chr9 17780837 17780836 + SEVERIN-2 1952 0.0053 (15/2813) 0 * * Os_TE_43632 Chr9 17778550 17778551 + INDITTO 263 0.0003 (1/2956) 0 * Os_TE_43631 Os_TE_43631 Chr9 17778548 17778547 - INDITTO 263 0.0003 (1/2955) 0 * Os_TE_43632 Os_TE_43629 Chr9 17777027 17777026 - TYPEM 227 0.0003 (1/2999) 0 * * Os_TE_43595 Chr9 17758849 17758850 + ORSgTEMT01601591 242 0.0017 (5/2893) 0 * * Os_TE_43580 Chr9 17751837 17751838 - HARB-1_OS 5166 0.0007 (2/2973) 0 * Os_TE_43579 Os_TE_43579 Chr9 17751835 17751834 + HARB-1_OS 5166 0.0007 (2/2973) 0 * Os_TE_43580 Os_TE_43578 Chr9 17751790 17751791 + COPI2_LTR 4733 0.0017 (5/2971) 0 * * Os_TE_43556 Chr9 17739247 17739248 - GYPSY-A_LTR 8951 0.0084 (25/2994) 0 * Os_TE_43555 Os_TE_43555 Chr9 17739243 17739242 + SZ-40LTR 2465 0.0077 (23/2996) 0 * Os_TE_43556 Os_TE_43513 Chr9 17715231 17715232 - MPING 430 0.0003 (1/2996) 0 * Os_TE_43512 Os_TE_43512 Chr9 17715229 17715228 + MPING 430 0.0008 (1/1324) 0 * Os_TE_43513 Os_TE_43510 Chr9 17714450 17714449 + SPMLIKE 10989 0.0709 (212/2992) 0 * * Os_TE_43492 Chr9 17709366 17709365 - MPING 430 0.0003 (1/2980) 0 * * Os_TE_43489 Chr9 17706894 17706893 + ORSgTEMT06000088 181 0.0004 (1/2763) 0 * * Os_TE_43452 Chr9 17690967 17690968 + SPMLIKE 10989 0.0003 (1/2996) 0 * Os_TE_43451 Os_TE_43451 Chr9 17690965 17690964 - SPMLIKE 10989 0.0003 (1/2997) 0 * Os_TE_43452 Os_TE_43444 Chr9 17689384 17689383 + OSTE33 1012 0.0013 (4/2991) 0 * * Os_TE_43443 Chr9 17688419 17688420 - ORSiTERTOOT00367 5639 0.0007 (2/2996) 0 * Os_TE_43442 Os_TE_43442 Chr9 17688415 17688414 + ORSiTERTOOT00367 5639 0.0007 (2/2992) 0 * Os_TE_43443 Os_TE_43434 Chr9 17686726 17686725 + Cassandra_OS-LTR 764 0.5359 (1559/2909) 0 * * Os_TE_43420 Chr9 17680588 17680589 + HARB-1_OS 5166 0.0003 (1/2994) 0 * Os_TE_43419 Os_TE_43419 Chr9 17680586 17680585 - HARB-1_OS 5166 0.0003 (1/2990) 0 * Os_TE_43420 Os_TE_43410 Chr9 17677284 17677285 + RETRO2_LTR 12874 0.5951 (1771/2976) 0 * * Os_TE_43372 Chr9 17659098 17659099 - SZ-22_LTR 4403 0.0003 (1/2999) 0 * * Os_TE_43362 Chr9 17655623 17655622 + RETROSAT4_LTR 13504 0.0047 (14/2994) 0 * * Os_TE_43360 Chr9 17655163 17655162 - GYPSY-A_LTR 8951 0.0030 (9/2994) 0 * * Os_TE_43347 Chr9 17645931 17645932 - COPIA2-LTR_OS 6433 0.0069 (20/2910) 0 * Os_TE_43346 Os_TE_43346 Chr9 17645927 17645926 + COPIA2-LTR_OS 6433 0.0062 (18/2894) 0 * Os_TE_43347 Os_TE_43334 Chr9 17643821 17643822 - TOURIST-XI 219 0.0095 (17/1791) 0 * Os_TE_43333 Os_TE_43333 Chr9 17643818 17643817 - ORSgTETNOOT00754 253 0.0132 (24/1822) 0 * Os_TE_43334 Os_TE_43249 Chr9 17597121 17597122 - RIRE2_LTR 11306 0.0007 (2/2956) 0 * Os_TE_43248 Os_TE_43248 Chr9 17597117 17597116 - ORSgTERT00201216 11284 0.0007 (2/2957) 0 * Os_TE_43249 Os_TE_43247 Chr9 17596677 17596678 + CACTA-M 1129 0.0010 (3/2984) 0 * Os_TE_43246 Os_TE_43246 Chr9 17596675 17596674 - CACTA-M 1129 0.0010 (3/2984) 0 * Os_TE_43247 Os_TE_43172 Chr9 17579977 17579976 - STOWAWAY18_OS 216 0.0013 (4/2994) 0 * * Os_TE_43170 Chr9 17579458 17579457 + TWIFB1 3737 0.0003 (1/2992) 0 * * Os_TE_43169 Chr9 17579289 17579290 - COPIA2-LTR_OS 6433 0.0003 (1/2986) 0 * Os_TE_43168 Os_TE_43168 Chr9 17579285 17579284 + COPIA2-LTR_OS 6433 0.0003 (1/2983) 0 * Os_TE_43169 Os_TE_43162 Chr9 17577975 17577974 - RETROSAT2LTR 12796 0.6090 (1777/2918) 0 * * Os_TE_43125 Chr9 17556912 17556913 + MuDR2_OS 6770 0.4952 (1433/2894) 0 * Os_TE_43124 Os_TE_43124 Chr9 17556903 17556902 - MuDR2_OS 6770 0.4819 (1361/2824) 0 * Os_TE_43125 Os_TE_43113 Chr9 17553887 17553888 - ORSiTERTOOT00074 4935 0.0003 (1/2962) 0 * Os_TE_43112 Os_TE_43112 Chr9 17553883 17553882 + ORSiTERTOOT00074 4935 0.0003 (1/2959) 0 * Os_TE_43113 Os_TE_43096 Chr9 17546414 17546415 - SZ-22_LTR 4403 0.0010 (3/2983) 0 * Os_TE_43095 Os_TE_43095 Chr9 17546410 17546409 + ORSiTERTOOT00226 792 0.0010 (3/2986) 0 * Os_TE_43096 Os_TE_43092 Chr9 17545671 17545670 + RETRO2_LTR 12874 0.0706 (211/2987) 0 * * Os_TE_43086 Chr9 17543277 17543278 + STOWAWAY44_OS 240 0.0003 (1/2982) 0 * * Os_TE_43067 Chr9 17539076 17539077 - STOWAWAY51_OS 246 0.0003 (1/2968) 0 * * Os_TE_43050 Chr9 17532762 17532761 + STOWAWAY44_OS 240 0.0003 (1/2969) 0 * Os_TE_43049 Os_TE_43049 Chr9 17532759 17532760 - STOWAWAY44_OS 240 0.0003 (1/2978) 0 * Os_TE_43050 Os_TE_43045 Chr9 17531517 17531516 + ORSgTEMT01900030 288 0.0017 (5/2998) 0 * * Os_TE_43037 Chr9 17530574 17530575 + ORSgTEMT00600124 361 0.0388 (116/2988) 0 * Os_TE_43036 Os_TE_43036 Chr9 17530573 17530572 + CASTAWAY 364 0.0395 (118/2989) 0 * Os_TE_43037 Os_TE_43009 Chr9 17514450 17514451 - COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_43008 Os_TE_43008 Chr9 17514446 17514445 + COPIA2-LTR_OS 6433 0.0007 (2/2998) 0 * Os_TE_43009 Os_TE_42994 Chr9 17505626 17505627 + Cassandra_OS-LTR 764 0.5933 (1777/2995) 0 * * Os_TE_42987 Chr9 17500207 17500208 - ORSiTERTOOT00367 5639 0.0007 (2/2989) 0 * Os_TE_42986 Os_TE_42986 Chr9 17500203 17500202 + ORSiTERTOOT00367 5639 0.0007 (2/2992) 0 * Os_TE_42987 Os_TE_42980 Chr9 17495062 17495063 - SZ-25LTR 330 0.0007 (2/2993) 0 * Os_TE_42979 Os_TE_42979 Chr9 17495058 17495057 + COPI1_LTR 4721 0.0007 (2/2989) 0 * Os_TE_42980 Os_TE_42943 Chr9 17470839 17470838 - RETRO1_LTR 8314 0.0040 (12/2997) 0 * * Os_TE_42942 Chr9 17470465 17470464 + TRUNCATOR 2918 0.0861 (258/2995) 0 * Os_TE_42941 Os_TE_42941 Chr9 17470464 17470465 - TRUNCATOR 2918 0.0866 (259/2992) 0 * Os_TE_42942 Os_TE_42940 Chr9 17468900 17468901 + COPI2_LTR 4733 0.0003 (1/2991) 0 * Os_TE_42939 Os_TE_42939 Chr9 17468896 17468895 - COPI2_LTR 4733 0.0003 (1/2993) 0 * Os_TE_42940 Os_TE_42936 Chr9 17467109 17467110 - COPIA2-LTR_OS 6433 0.0020 (6/2992) 0 * Os_TE_42935 Os_TE_42935 Chr9 17467105 17467104 + COPIA2-LTR_OS 6433 0.0017 (5/2994) 0 * Os_TE_42936 Os_TE_42930 Chr9 17464909 17464908 - SZ-35LTR 3853 0.0020 (6/2951) 0 * * Os_TE_42911 Chr9 17459843 17459844 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_42910 Os_TE_42910 Chr9 17459839 17459838 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_42911 Os_TE_42877 Chr9 17450763 17450424 - ORSgTEMT00600129 350 0.2125 (546/2569) -1 Intact * Os_TE_42871 Chr9 17446528 17446529 + COPI2_LTR 4733 0.0017 (5/2991) 0 * Os_TE_42870 Os_TE_42870 Chr9 17446524 17446523 - COPI2_LTR 4733 0.0017 (5/2994) 0 * Os_TE_42871 Os_TE_42869 Chr9 17445527 17435196 + SZ-55_LTR 10318 0.3296 (988/2998) 1 Intact Os_TE_42868 Os_TE_42868 Chr9 17435196 17444754 - SZ-55_LTR 10318 0.3265 (978/2995) 1 Intact Os_TE_42869 Os_TE_42866 Chr9 17434899 17434900 + RETROSAT4_LTR 13504 0.0041 (12/2962) 0 * Os_TE_42865 Os_TE_42865 Chr9 17434895 17434894 - RETROSAT4_LTR 13504 0.0042 (12/2889) 0 * Os_TE_42866 Os_TE_42847 Chr9 17424235 17424236 + ORSgTEMT01601591 242 0.0003 (1/2986) 0 * * Os_TE_42841 Chr9 17422189 17422190 - CACTA-H 1152 0.0007 (2/2962) 0 * Os_TE_42840 Os_TE_42840 Chr9 17422187 17422186 + CACTA-I 1124 0.0003 (1/2966) 0 * Os_TE_42841 Os_TE_42801 Chr9 17403282 17403283 - MUDRN5_OS 374 0.0007 (2/2994) 0 * * Os_TE_42788 Chr9 17401845 17401846 - RIREX_LTR 8828 0.0007 (2/2996) 0 * Os_TE_42787 Os_TE_42787 Chr9 17401841 17401840 + RIREX_LTR 8828 0.0007 (2/2995) 0 * Os_TE_42788 Os_TE_42784 Chr9 17399648 17399649 - RIREX_LTR 8828 0.0027 (8/2990) 0 * * Os_TE_42772 Chr9 17392774 17392775 + OSTE33 1012 0.0028 (8/2837) 0 * Os_TE_42771 Os_TE_42771 Chr9 17392766 17392765 + OSTE33 1012 0.0023 (6/2558) 0 * Os_TE_42772 Os_TE_42761 Chr9 17391358 17391357 + ORSgTEMT01601591 242 0.0003 (1/2998) 0 * * Os_TE_42742 Chr9 17384718 17384719 + SC-8_LTR 4951 0.0003 (1/2987) 0 * Os_TE_42741 Os_TE_42741 Chr9 17384714 17384713 - SC-8_LTR 4951 0.0003 (1/2987) 0 * Os_TE_42742 Os_TE_42740 Chr9 17380196 17380197 + SC-8_LTR 4951 0.0007 (2/2965) 0 * Os_TE_42739 Os_TE_42739 Chr9 17380192 17380191 - SC-8_LTR 4951 0.0007 (2/2954) 0 * Os_TE_42740 Os_TE_42731 Chr9 17377769 17377770 + MPING 430 0.0003 (1/2997) 0 * Os_TE_42730 Os_TE_42730 Chr9 17377767 17377766 - MPING 430 0.0003 (1/2993) 0 * Os_TE_42731 Os_TE_42709 Chr9 17373157 17373156 - ORSgTEMT01500002 239 0.0004 (1/2449) 0 * * Os_TE_42705 Chr9 17370161 17370160 - MPING 430 0.0003 (1/2992) 0 * * Os_TE_42701 Chr9 17366265 17366266 - RIREX_LTR 8828 0.0007 (2/2995) 0 * Os_TE_42700 Os_TE_42700 Chr9 17366261 17366260 + RIREX_LTR 8828 0.0010 (3/2996) 0 * Os_TE_42701 Os_TE_42696 Chr9 17363576 17363577 - COPIA2-LTR_OS 6433 0.0134 (40/2977) 0 * Os_TE_42695 Os_TE_42695 Chr9 17363572 17363571 + COPIA2-LTR_OS 6433 0.0124 (37/2974) 0 * Os_TE_42696 Os_TE_42683 Chr9 17359496 17359497 + ORSiTERTOOT00004 4000 0.0003 (1/2983) 0 * * Os_TE_42675 Chr9 17357404 17357403 + DS-RICE4N 715 0.6707 (1959/2921) 0 * Os_TE_42674 Os_TE_42674 Chr9 17357395 17357396 + ORSiTETN00100018 738 0.6784 (2017/2973) 0 * Os_TE_42675 Os_TE_42656 Chr9 17352734 17352735 - MPING 430 0.0003 (1/2965) 0 * * Os_TE_42645 Chr9 17347241 17347240 + STOWAWAY51_OS 246 0.0003 (1/2996) 0 * Os_TE_42644 Os_TE_42644 Chr9 17347235 17347236 + ORSgTEMT01601591 242 0.0003 (1/2997) 0 * Os_TE_42645 Os_TE_42609 Chr9 17340167 17340166 - STOWAWAY51_OS 246 0.0007 (2/2997) 0 * Os_TE_42608 Os_TE_42608 Chr9 17340164 17340165 - STOWAWAY51_OS 246 0.0007 (2/2992) 0 * Os_TE_42609 Os_TE_42606 Chr9 17339935 17339936 - MPING 430 0.0003 (1/2998) 0 * Os_TE_42605 Os_TE_42605 Chr9 17339933 17339932 + MPING 430 0.0003 (1/2998) 0 * Os_TE_42606 Os_TE_42597 Chr9 17336407 17336408 - Cassandra_OS-LTR 764 0.5242 (1570/2995) 0 * Os_TE_42596 Os_TE_42596 Chr9 17336404 17336403 + Cassandra_OS-LTR 764 0.5247 (1572/2996) 0 * Os_TE_42597 Os_TE_42595 Chr9 17336142 17336143 + RETROSAT4_LTR 13504 0.0013 (4/2993) 0 * Os_TE_42594 Os_TE_42594 Chr9 17336138 17336137 - RETROSAT4_LTR 13504 0.0017 (5/2994) 0 * Os_TE_42595 Os_TE_42593 Chr9 17335978 17335979 + Cassandra_OS-LTR 764 0.0003 (1/2994) 0 * Os_TE_42592 Os_TE_42592 Chr9 17335974 17335973 - Cassandra_OS-LTR 764 0.0003 (1/2989) 0 * Os_TE_42593 Os_TE_42581 Chr9 17322653 17322652 + STOWAWAY51_OS 246 0.0007 (2/2997) 0 * Os_TE_42580 Os_TE_42580 Chr9 17322647 17322648 - STOWAWAY51_OS 246 0.0007 (2/2998) 0 * Os_TE_42581 Os_TE_42567 Chr9 17313887 17313888 + COPI2_LTR 4733 0.0004 (1/2850) 0 * Os_TE_42566 Os_TE_42566 Chr9 17313883 17313882 - COPI2_LTR 4733 0.0007 (2/2870) 0 * Os_TE_42567 Os_TE_42555 Chr9 17307296 17307295 + ORSgTEMT01601591 242 0.0003 (1/2992) 0 * Os_TE_42554 Os_TE_42554 Chr9 17307290 17307291 + STOWAWAY51_OS 246 0.0003 (1/2989) 0 * Os_TE_42555 Os_TE_42527 Chr9 17296024 17296025 - HARB-1_OS 5166 0.0010 (3/2992) 0 * Os_TE_42526 Os_TE_42526 Chr9 17296022 17296021 + HARB-1_OS 5166 0.0010 (3/2992) 0 * Os_TE_42527 Os_TE_42510 Chr9 17291464 17291465 + RETROSAT4_LTR 13504 0.0004 (1/2795) 0 * * Os_TE_42505 Chr9 17288757 17288756 + SZ-58LTR 114 0.0213 (22/1035) 0 * * Os_TE_42464 Chr9 17278969 17278970 - TYPEM 227 0.0003 (1/2998) 0 * * Os_TE_42461 Chr9 17275377 17275376 + AMYLTP 383 0.0017 (5/2987) 0 * * Os_TE_42445 Chr9 17270248 17270249 - SZ-62LTR 3649 0.0048 (13/2727) 0 * Os_TE_42444 Os_TE_42444 Chr9 17270244 17270243 + SZ-62LTR 3649 0.0044 (12/2737) 0 * Os_TE_42445 Os_TE_42418 Chr9 17263471 17263472 - RIREX_LTR 8828 0.0003 (1/2996) 0 * Os_TE_42417 Os_TE_42417 Chr9 17263467 17263466 + RIREX_LTR 8828 0.0003 (1/2992) 0 * Os_TE_42418 Os_TE_42416 Chr9 17261664 17257801 + RETROSAT4_LTR 13504 0.3078 (897/2914) 1 Solo_LTR Os_TE_42413 Os_TE_42413 Chr9 17257801 17261664 - SZ-35LTR 3853 0.3314 (986/2975) 1 Intact Os_TE_42416 Os_TE_42412 Chr9 17257288 17257289 - RETROSAT4_LTR 13504 0.0003 (1/2982) 0 * Os_TE_42411 Os_TE_42411 Chr9 17257284 17257283 + RETROSAT4_LTR 13504 0.0003 (1/2982) 0 * Os_TE_42412 Os_TE_42381 Chr9 17243313 17243314 + OSMUD1 5028 0.0027 (8/2999) 0 * Os_TE_42380 Os_TE_42380 Chr9 17243305 17243304 - OSMUD1 5028 0.0027 (8/2999) 0 * Os_TE_42381 Os_TE_42369 Chr9 17239274 17239275 + RIRE3_LTR 12054 0.0007 (2/2999) 0 * * Os_TE_42353 Chr9 17233164 17233163 + TRUNCATOR 2918 0.0023 (7/2998) 0 * * Os_TE_42307 Chr9 17215409 17215410 - ORSgTETN00200001 10994 0.0689 (206/2991) 0 * Os_TE_42306 Os_TE_42306 Chr9 17215407 17215406 + CACTA-H 1152 0.0686 (205/2988) 0 * Os_TE_42307 Os_TE_42292 Chr9 17214287 17214288 + COPIA2-LTR_OS 6433 0.0013 (4/2993) 0 * * Os_TE_42291 Chr9 17214032 17214031 + STOWAWAY51_OS 246 0.0010 (3/2997) 0 * Os_TE_42290 Os_TE_42290 Chr9 17214026 17214027 - STOWAWAY51_OS 246 0.0010 (3/2997) 0 * Os_TE_42291 Os_TE_42287 Chr9 17212938 17212939 + RIREX_LTR 8828 0.0010 (3/2989) 0 * Os_TE_42286 Os_TE_42286 Chr9 17212934 17212933 - RIREX_LTR 8828 0.0010 (3/2991) 0 * Os_TE_42287 Os_TE_42281 Chr9 17210999 17211000 - ORSgTERT00201216 11284 0.0010 (3/2992) 0 * Os_TE_42280 Os_TE_42280 Chr9 17210995 17210994 - RIRE2_LTR 11306 0.0010 (3/2992) 0 * Os_TE_42281 Os_TE_42276 Chr9 17206036 17206037 + COPI2_LTR 4733 0.0003 (1/2997) 0 * Os_TE_42275 Os_TE_42275 Chr9 17206032 17206031 - COPI2_LTR 4733 0.0003 (1/2997) 0 * Os_TE_42276 Os_TE_42274 Chr9 17204038 17204037 - ORSgTEMT02400246 177 0.6070 (1816/2992) 0 * * Os_TE_42273 Chr9 17204037 17204038 - TYPEM 227 0.6723 (2002/2978) 0 * * Os_TE_42268 Chr9 17197046 17197047 - SZ-48LTR 3632 0.0003 (1/2992) 0 * * Os_TE_42259 Chr9 17191277 17191278 + ORSgTEMT02400116 209 0.0871 (260/2986) 0 * Os_TE_42258 Os_TE_42258 Chr9 17191276 17191275 - TYPEM 227 0.0844 (252/2986) 0 * Os_TE_42259 Os_TE_42253 Chr9 17188024 17188025 - COPI2_LTR 4733 0.0007 (2/2989) 0 * Os_TE_42252 Os_TE_42252 Chr9 17188020 17188019 + COPI2_LTR 4733 0.0007 (2/2987) 0 * Os_TE_42253 Os_TE_42250 Chr9 17182927 17182928 - ORSiTERTOOT00183 3603 0.0007 (2/2993) 0 * * Os_TE_42202 Chr9 17152040 17152041 - COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_42201 Os_TE_42201 Chr9 17152036 17152035 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_42202 Os_TE_42196 Chr9 17150422 17150421 - ENSPM4_OS 11610 0.0704 (211/2997) 0 * * Os_TE_42185 Chr9 17145774 17145775 - RETRO1_LTR 8314 0.0024 (3/1267) 0 * * Os_TE_42167 Chr9 17138243 17138244 + COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_42166 Os_TE_42166 Chr9 17138239 17138238 - COPI2_LTR 4733 0.0003 (1/2993) 0 * Os_TE_42167 Os_TE_42156 Chr9 17135295 17135296 + RIREX_LTR 8828 0.0010 (3/2997) 0 * Os_TE_42155 Os_TE_42155 Chr9 17135291 17135290 - RIREX_LTR 8828 0.0010 (3/2994) 0 * Os_TE_42156 Os_TE_42142 Chr9 17127095 17127094 - RETRO2_LTR 12874 0.0004 (1/2837) 0 * * Os_TE_42129 Chr9 17119657 17119658 - MPING 430 0.0033 (10/2993) 0 * Os_TE_42128 Os_TE_42128 Chr9 17119655 17119654 + MPING 430 0.0037 (11/2992) 0 * Os_TE_42129 Os_TE_42119 Chr9 17117359 17117360 - INDITTO 263 0.5234 (1535/2933) 0 * Os_TE_42118 Os_TE_42118 Chr9 17117357 17117356 - ORSgTETNOOT00053 263 0.5290 (1578/2983) 0.09 * Os_TE_42119 Os_TE_42117 Chr9 17117348 17117349 + MPING 430 0.0047 (14/2959) 0 * Os_TE_42116 Os_TE_42116 Chr9 17117346 17117345 - MPING 430 0.0095 (14/1478) 0 * Os_TE_42117 Os_TE_42111 Chr9 17116789 17116788 - INDITTO 263 0.0017 (5/2934) 0 * * Os_TE_42106 Chr9 17116135 17116134 + AMYLTP 383 0.0825 (243/2944) 0 * * Os_TE_42104 Chr9 17114705 17114704 - RETRO2_LTR 12874 0.1766 (487/2758) 0 * * Os_TE_42103 Chr9 17113991 17113990 - FOCUS 257 0.0003 (1/2997) 0 * * Os_TE_42097 Chr9 17112159 17112160 + ORSgTEMT02400206 225 0.0003 (1/2927) 0 * * Os_TE_42089 Chr9 17111628 17111629 + RIRE2_LTR 11306 0.0003 (1/2956) 0 * Os_TE_42088 Os_TE_42088 Chr9 17111624 17111623 - RIRE2_LTR 11306 0.0003 (1/2967) 0 * Os_TE_42089 Os_TE_42080 Chr9 17106136 17106137 + GYPSY-A_LTR 8951 0.0011 (3/2679) 0 * Os_TE_42079 Os_TE_42079 Chr9 17106132 17106131 - GYPSY-A_LTR 8951 0.0011 (3/2735) 0 * Os_TE_42080 Os_TE_42077 Chr9 17106067 17106066 - RIREX_LTR 8828 0.0004 (1/2842) 0 * * Os_TE_42070 Chr9 17104867 17104866 + ORSgTEMT00901422 244 0.0003 (1/2965) 0 * * Os_TE_42062 Chr9 17103493 17103494 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_42061 Os_TE_42061 Chr9 17103489 17103488 + COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * Os_TE_42062 Os_TE_42060 Chr9 17103114 17103115 + MPING 430 0.0003 (1/2995) 0 * Os_TE_42059 Os_TE_42059 Chr9 17103112 17103111 - MPING 430 0.0003 (1/2991) 0 * Os_TE_42060 Os_TE_42054 Chr9 17102111 17102112 + ORSgTEMT00600272 361 0.0137 (41/2995) 0 * Os_TE_42053 Os_TE_42053 Chr9 17102109 17102108 - ORSgTEMT00600524 364 0.0144 (43/2995) 0 * Os_TE_42054 Os_TE_42041 Chr9 17097535 17097536 + TWIF 586 0.0821 (246/2996) 0 * * Os_TE_41997 Chr9 17080582 17080581 + RIREX_LTR 8828 0.5887 (1755/2981) 0 * * Os_TE_41974 Chr9 17074603 17074602 + ORSgTEMT00502261 144 0.0003 (1/2998) 0 * * Os_TE_41973 Chr9 17071550 17071551 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_41972 Os_TE_41972 Chr9 17071546 17071545 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_41973 Os_TE_41970 Chr9 17070999 17070998 + MPING 430 0.0003 (1/2923) 0 * * Os_TE_41909 Chr9 17021446 17021447 - SC-3_LTR 5748 0.0003 (1/2994) 0 * Os_TE_41908 Os_TE_41908 Chr9 17021442 17021441 + ORSiTERTOOT00296 5553 0.0003 (1/2994) 0 * Os_TE_41909 Os_TE_41902 Chr9 17016103 17015611 - OSTONOR1_LTR 6440 0.1744 (523/2998) 1 Solo_LTR Os_TE_41901 Os_TE_41901 Chr9 17015612 17016104 + OSTONOR1_LTR 6440 0.1735 (519/2992) 1 Solo_LTR Os_TE_41902 Os_TE_41900 Chr9 17014431 17014432 + SZ-67LTR 1540 0.0683 (204/2986) 0 * Os_TE_41899 Os_TE_41899 Chr9 17014427 17014426 - RETROSAT5_LTR 13878 0.0719 (215/2992) 0 * Os_TE_41900 Os_TE_41879 Chr9 17002973 17002974 + SC-8_LTR 4951 0.0010 (3/2968) 0 * Os_TE_41878 Os_TE_41878 Chr9 17002969 17002968 - SC-8_LTR 4951 0.0010 (3/2976) 0 * Os_TE_41879 Os_TE_41861 Chr9 16990599 16990600 + RETRO2_LTR 12874 0.1621 (484/2986) 0 * * Os_TE_41856 Chr9 16987295 16987296 + INDITTO 263 0.0010 (3/2992) 0 * Os_TE_41855 Os_TE_41855 Chr9 16987293 16987292 - INDITTO 263 0.0010 (3/2993) 0 * Os_TE_41856 Os_TE_41827 Chr9 16975898 16975899 - OSTE24 683 0.1258 (367/2917) 0 * * Os_TE_41824 Chr9 16974799 16974800 + CACTA-B 1103 0.0037 (11/2996) 0 * * Os_TE_41807 Chr9 16970114 16970113 - RIREX_LTR 8828 0.0003 (1/2997) 0 * * Os_TE_41782 Chr9 16958497 16958496 - STOWAWAY51_OS 246 0.0121 (36/2985) 0 * Os_TE_41781 Os_TE_41781 Chr9 16958494 16958495 - STOWAWAY51_OS 246 0.0110 (33/2990) 0 * Os_TE_41782 Os_TE_41766 Chr9 16951435 16951436 - TYPEM 227 0.0007 (2/2995) 0 * Os_TE_41765 Os_TE_41765 Chr9 16951434 16951433 - ORSgTEMT02400179 221 0.0007 (2/2988) 0 * Os_TE_41766 Os_TE_41741 Chr9 16947453 16947454 + F770 284 0.0773 (231/2987) 0 * * Os_TE_41734 Chr9 16941013 16941014 + RETROSAT4_LTR 13504 0.0756 (225/2977) 0 * * Os_TE_41711 Chr9 16929573 16929574 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * * Os_TE_41707 Chr9 16928830 16928831 + TREP220 109 0.0013 (4/2991) 0 * Os_TE_41706 Os_TE_41706 Chr9 16928802 16928801 + TRUNCATOR 2918 0.0007 (2/2986) 0 * Os_TE_41707 Os_TE_41654 Chr9 16912173 16911574 + DS-RICE2N 613 0.1706 (510/2990) 1 Intact Os_TE_41653 Os_TE_41653 Chr9 16911574 16912173 - DS-RICE2N 613 0.1738 (521/2997) 1 Intact Os_TE_41654 Os_TE_41648 Chr9 16910711 16910712 - ORSgTEMT02400148 214 0.6656 (1949/2928) 0 * * Os_TE_41644 Chr9 16908915 16908914 - RIREX_LTR 8828 0.0003 (1/2990) 0 * * Os_TE_41638 Chr9 16907103 16907102 - RIRE3A_LTR 10580 0.0007 (2/2960) 0 * * Os_TE_41629 Chr9 16905407 16905408 + INDITTO 263 0.0114 (34/2990) 0 * Os_TE_41628 Os_TE_41628 Chr9 16905405 16905404 - INDITTO 263 0.0120 (36/2991) 0 * Os_TE_41629 Os_TE_41587 Chr9 16888186 16888187 + ORSiCMCM00100019 2717 0.0016 (4/2564) 0 * * Os_TE_41573 Chr9 16883563 16883564 + ORSgTEMT06100010 269 0.1490 (444/2979) 0 * Os_TE_41572 Os_TE_41572 Chr9 16883561 16883560 - ORSgTEMT06100010 269 0.1506 (449/2982) 0 * Os_TE_41573 Os_TE_41529 Chr9 16869325 16869324 - CRM-LTR_OS 7749 0.0003 (1/2999) 0 * * Os_TE_41523 Chr9 16868726 16868725 + RIRE3_LTR 12054 0.0023 (7/2992) 0 * * Os_TE_41511 Chr9 16865820 16865821 + INDITTO 263 0.0037 (11/2998) 0 * Os_TE_41510 Os_TE_41510 Chr9 16865818 16865817 - INDITTO 263 0.0037 (11/2999) 0 * Os_TE_41511 Os_TE_41509 Chr9 16863253 16863252 + STOWAWAY51_OS 246 0.0050 (15/2989) 0 * Os_TE_41508 Os_TE_41508 Chr9 16863247 16863248 + ORSgTEMT01601591 242 0.0050 (15/2995) 0 * Os_TE_41509 Os_TE_41498 Chr9 16860197 16860198 + SC-8_LTR 4951 0.0007 (2/2985) 0 * Os_TE_41497 Os_TE_41497 Chr9 16860193 16860192 - SC-8_LTR 4951 0.0007 (2/2978) 0 * Os_TE_41498 Os_TE_41473 Chr9 16852066 16852065 + TWIF 586 0.0003 (1/2996) 0 * * Os_TE_41463 Chr9 16847310 16847311 - TYPEU1 380 0.0834 (247/2963) 0 * Os_TE_41462 Os_TE_41462 Chr9 16847302 16847301 + TYPEU4 402 0.0816 (244/2992) 0 * Os_TE_41463 Os_TE_41435 Chr9 16834239 16834238 - ORSgTEMT02400246 177 0.0007 (2/2996) 0 * Os_TE_41434 Os_TE_41434 Chr9 16834238 16834239 - TYPEM 227 0.0007 (2/2977) 0 * Os_TE_41435 Os_TE_41430 Chr9 16832831 16832830 - RETRO2_LTR 12874 0.0013 (4/2978) 0 * * Os_TE_41422 Chr9 16831227 16831226 - RIRE2_LTR 11306 0.0007 (2/2922) 0 * * Os_TE_41417 Chr9 16828795 16828796 + NDNA1TNA_OS 334 0.0007 (2/2987) 0 * * Os_TE_41412 Chr9 16827137 16826747 + TYPEU4 402 0.1707 (511/2994) 1 Intact Os_TE_41409 Os_TE_41409 Chr9 16826747 16827137 - TYPEU1 380 0.1714 (514/2999) 1 Intact Os_TE_41412 Os_TE_41408 Chr9 16825497 16825498 + COPI2_LTR 4733 0.0010 (3/2989) 0 * Os_TE_41407 Os_TE_41407 Chr9 16825493 16825492 - COPI2_LTR 4733 0.0010 (3/2991) 0 * Os_TE_41408 Os_TE_41406 Chr9 16825250 16825251 - RIREX_LTR 8828 0.0160 (48/2998) 0 * Os_TE_41405 Os_TE_41405 Chr9 16825246 16825245 + RIREX_LTR 8828 0.0157 (47/2997) 0 * Os_TE_41406 Os_TE_41399 Chr9 16819238 16819239 + RIRE2_LTR 11306 0.0007 (2/2907) 0 * * Os_TE_41396 Chr9 16818369 16818370 + F569 228 0.0007 (2/2986) 0 * Os_TE_41395 Os_TE_41395 Chr9 16818367 16818366 - F569 228 0.0007 (2/2980) 0 * Os_TE_41396 Os_TE_41374 Chr9 16812238 16812237 - NDNA1TNA_OS 334 0.0013 (4/2989) 0 * * Os_TE_41359 Chr9 16803632 16803633 + RIREX_LTR 8828 0.0007 (2/2997) 0 * Os_TE_41358 Os_TE_41358 Chr9 16803628 16803627 - RIREX_LTR 8828 0.0007 (2/2998) 0 * Os_TE_41359 Os_TE_41356 Chr9 16802928 16796826 + RIREX_LTR 8828 0.1119 (334/2985) 1 Intact Os_TE_41354 Os_TE_41354 Chr9 16796826 16802928 - RIREX_LTR 8828 0.1103 (328/2974) 1 Intact Os_TE_41356 Os_TE_41300 Chr9 16772888 16772889 + RETRO2A_LTR 12895 0.0003 (1/2881) 0 * Os_TE_41299 Os_TE_41299 Chr9 16772884 16772883 - RETRO2A_LTR 12895 0.0003 (1/2896) 0 * Os_TE_41300 Os_TE_41298 Chr9 16771443 16771444 + SEVERIN-2 1952 0.0013 (4/2996) 0 * Os_TE_41297 Os_TE_41297 Chr9 16771441 16771440 - SEVERIN-2 1952 0.0017 (5/2998) 0 * Os_TE_41298 Os_TE_41268 Chr9 16763108 16763109 + NDNA1TNA_OS 334 0.0007 (2/2992) 0 * Os_TE_41267 Os_TE_41267 Chr9 16763106 16763105 - NDNA1TNA_OS 334 0.0007 (2/2994) 0 * Os_TE_41268 Os_TE_41266 Chr9 16762749 16762750 + MPING 430 0.0003 (1/2975) 0 * Os_TE_41265 Os_TE_41265 Chr9 16762747 16762746 - MPING 430 0.0003 (1/2978) 0 * Os_TE_41266 Os_TE_41252 Chr9 16759822 16759821 - OSTE18 129 0.0020 (6/2996) 0 * * Os_TE_41248 Chr9 16754208 16754209 + OLO24B 335 0.6007 (1793/2985) 0 * * Os_TE_41233 Chr9 16750642 16750641 - RIREX_LTR 8828 0.0007 (2/2878) 0 * * Os_TE_41215 Chr9 16745204 16745205 + RIRE3_LTR 12054 0.0819 (245/2992) 0 * * Os_TE_41211 Chr9 16743420 16743421 + TRUNCATOR 2918 0.0010 (3/2872) 0 * * Os_TE_41192 Chr9 16736993 16736994 - MPING 430 0.0003 (1/2976) 0 * * Os_TE_41190 Chr9 16736951 16736950 + ORSgTETNOOT00012 241 0.0003 (1/2964) 0 * * Os_TE_41178 Chr9 16731517 16731516 + TRUNCATOR 2918 0.0007 (2/2985) 0 * * Os_TE_41168 Chr9 16726549 16726548 - TRUNCATOR 2918 0.6668 (1953/2929) 0 * Os_TE_41167 Os_TE_41167 Chr9 16726544 16726545 - RETROSAT2LTR 12796 0.6757 (2011/2976) 0 * Os_TE_41168 Os_TE_41159 Chr9 16723324 16723323 + TRUNCATOR 2918 0.0705 (211/2992) 0 * Os_TE_41158 Os_TE_41158 Chr9 16723323 16723324 - TRUNCATOR 2918 0.0699 (209/2990) 0 * Os_TE_41159 Os_TE_41133 Chr9 16714843 16714844 + RETRO2_LTR 12874 0.0768 (230/2994) 0 * Os_TE_41132 Os_TE_41132 Chr9 16714839 16714838 - RETRO2_LTR 12874 0.0756 (226/2990) 0 * Os_TE_41133 Os_TE_41131 Chr9 16714775 16714776 + ORSgTEMT00900524 479 0.0003 (1/2983) 0 * * Os_TE_41130 Chr9 16714769 16714770 - SZ-35LTR 3853 0.0043 (13/2996) 0 * Os_TE_41129 Os_TE_41129 Chr9 16714765 16714764 + RETROSAT4_LTR 13504 0.0040 (12/2994) 0 * Os_TE_41130 Os_TE_41120 Chr9 16714387 16714386 - ORSgTEMT00900467 235 0.0007 (2/2988) 0 * * Os_TE_41119 Chr9 16714381 16714380 + ORSgTEMT00900079 241 0.0007 (2/2991) 0 * * Os_TE_41098 Chr9 16704669 16704670 + RIREX_LTR 8828 0.0003 (1/2979) 0 * Os_TE_41097 Os_TE_41097 Chr9 16704665 16704664 - RIREX_LTR 8828 0.0003 (1/2963) 0 * Os_TE_41098 Os_TE_41096 Chr9 16704559 16704560 - CACTA-M 1129 0.0252 (75/2982) 0 * Os_TE_41095 Os_TE_41095 Chr9 16704557 16704556 + CACTA-M 1129 0.0242 (72/2979) 0 * Os_TE_41096 Os_TE_41080 Chr9 16698570 16698141 - MPING 430 0.0033 (10/2989) 1 Intact Os_TE_41079 Os_TE_41079 Chr9 16698141 16698570 + MPING 430 0.0037 (11/2988) 1 Intact Os_TE_41080 Os_TE_41073 Chr9 16695519 16695520 - HARB-1_OS 5166 0.0018 (5/2772) 0 * Os_TE_41072 Os_TE_41072 Chr9 16695517 16695516 + HARB-1_OS 5166 0.0018 (5/2769) 0 * Os_TE_41073 Os_TE_41056 Chr9 16689560 16689823 + ORSgTETNOOT00221 261 0.3103 (918/2958) 1 Intact * Os_TE_41049 Chr9 16688329 16688330 - F569 228 0.0003 (1/2892) 0 * Os_TE_41048 Os_TE_41048 Chr9 16688327 16688326 + F569 228 0.0003 (1/2905) 0 * Os_TE_41049 Os_TE_41047 Chr9 16688057 16688056 + AMYLTP 383 0.0026 (4/1525) 0 * * Os_TE_41044 Chr9 16687390 16687391 + ORSiTERTOOT00226 792 0.2694 (539/2001) 0 * * Os_TE_41043 Chr9 16687386 16687385 - SZ-22_LTR 4403 0.6796 (2034/2993) 0 * * Os_TE_40973 Chr9 16671450 16671106 + OLO24 345 0.3093 (924/2987) 1 Intact Os_TE_40972 Os_TE_40972 Chr9 16671106 16671450 - OLO24 345 0.3052 (911/2985) 1 Intact Os_TE_40973 Os_TE_40907 Chr9 16650157 16650158 + MPING 430 0.0003 (1/2985) 0 * * Os_TE_40899 Chr9 16648257 16648258 - STOWAWAY12_OS 312 0.0020 (3/1499) 0 * * Os_TE_40865 Chr9 16637400 16637399 + STOWAWAY51_OS 246 0.0007 (2/2949) 0 * Os_TE_40864 Os_TE_40864 Chr9 16637394 16637395 - STOWAWAY51_OS 246 0.0010 (3/2954) 0 * Os_TE_40865 Os_TE_40860 Chr9 16636113 16636114 + SC-8_LTR 4951 0.0003 (1/2995) 0 * Os_TE_40859 Os_TE_40859 Chr9 16636109 16636108 - SC-8_LTR 4951 0.0003 (1/2996) 0 * Os_TE_40860 Os_TE_40855 Chr9 16632346 16632347 - SZ-67LTR 1540 0.6754 (2014/2982) 0 * Os_TE_40854 Os_TE_40854 Chr9 16632342 16632341 + SZ-67LTR 1540 0.6687 (1982/2964) 0 * Os_TE_40855 Os_TE_40845 Chr9 16621304 16621303 + TYPEU4 402 0.0007 (2/2993) 0 * * Os_TE_40844 Chr9 16620599 16620600 + COPIA2-LTR_OS 6433 0.0003 (1/2967) 0 * Os_TE_40843 Os_TE_40843 Chr9 16620595 16620594 - COPIA2-LTR_OS 6433 0.0003 (1/2984) 0 * Os_TE_40844 Os_TE_40815 Chr9 16609192 16609193 + ORSiTERTOOT00426 5934 0.0003 (1/2976) 0 * * Os_TE_40743 Chr9 16576372 16576371 + STOWAWAY45_OS 266 0.0020 (6/2994) 0 * * Os_TE_40739 Chr9 16575512 16575511 + MPING 430 0.0010 (3/2960) 0 * Os_TE_40738 Os_TE_40738 Chr9 16575504 16575505 - MPING 430 0.0010 (3/2957) 0 * Os_TE_40739 Os_TE_40735 Chr9 16572559 16572560 - SZ-36LTR 5825 0.0007 (2/2990) 0 * Os_TE_40734 Os_TE_40734 Chr9 16572555 16572554 + SZ-36LTR 5825 0.0007 (2/2988) 0 * Os_TE_40735 Os_TE_40688 Chr9 16563083 16563084 - RETRO2A_LTR 12895 0.0007 (2/2996) 0 * Os_TE_40687 Os_TE_40687 Chr9 16563079 16563078 + RETRO2A_LTR 12895 0.0007 (2/2994) 0 * Os_TE_40688 Os_TE_40676 Chr9 16561981 16561982 + ORSgTEMT00300064 397 0.1976 (583/2951) 0 * Os_TE_40675 Os_TE_40675 Chr9 16561976 16561975 + ORSgTEMT00300069 394 0.2009 (595/2961) 0 * Os_TE_40676 Os_TE_40666 Chr9 16551970 16551969 + ORSgTETNOOT01690 244 0.5866 (1745/2975) 0 * * Os_TE_40659 Chr9 16550303 16550302 - ORSgTEMT02400179 221 0.0007 (2/2992) 0 * Os_TE_40658 Os_TE_40658 Chr9 16550300 16550301 + ORSgTEMT02400034 225 0.0007 (2/2993) 0 * Os_TE_40659 Os_TE_40657 Chr9 16547780 16547781 + SC-8_LTR 4951 0.0003 (1/2996) 0 * Os_TE_40656 Os_TE_40656 Chr9 16547776 16547775 - SC-8_LTR 4951 0.0003 (1/2996) 0 * Os_TE_40657 Os_TE_40653 Chr9 16547106 16547107 - SC-3_LTR 5748 0.0003 (1/2995) 0 * Os_TE_40652 Os_TE_40652 Chr9 16547102 16547101 + ORSiTERTOOT00296 5553 0.0003 (1/2995) 0 * Os_TE_40653 Os_TE_40637 Chr9 16542690 16542691 - RETROSAT5_LTR 13878 0.0014 (4/2955) 0 * * Os_TE_40627 Chr9 16530695 16530696 - COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_40626 Os_TE_40626 Chr9 16530691 16530690 + COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_40627 Os_TE_40619 Chr9 16526618 16526619 - RIREX_LTR 8828 0.0003 (1/2989) 0 * Os_TE_40618 Os_TE_40618 Chr9 16526614 16526613 + RIREX_LTR 8828 0.0003 (1/2991) 0 * Os_TE_40619 Os_TE_40586 Chr9 16504837 16504836 + ORSiTEMT01000008 242 0.0673 (198/2944) 0 * * Os_TE_40573 Chr9 16493677 16493676 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * * Os_TE_40550 Chr9 16475185 16475186 - MuDR2_OS 6770 0.1412 (419/2967) 0 * Os_TE_40549 Os_TE_40549 Chr9 16475176 16475175 + MuDR2_OS 6770 0.1393 (413/2965) 0 * Os_TE_40550 Os_TE_40546 Chr9 16474331 16474330 + COPI2_LTR 4733 0.0003 (1/2992) 0 * * Os_TE_40540 Chr9 16469721 16469722 + RETRO2A_LTR 12895 0.0010 (3/2986) 0 * * Os_TE_40519 Chr9 16461689 16461688 - AMYLTP 383 0.0868 (259/2984) 0 * * Os_TE_40515 Chr9 16460778 16460779 - SZ-35LTR 3853 0.0007 (2/2731) 0 * * Os_TE_40479 Chr9 16446318 16446317 + ORSgTERT00200961 124 0.4035 (1210/2999) 0.95 * * Os_TE_40449 Chr9 16436975 16436974 + ORSgTETNOOT00908 242 0.0003 (1/2948) 0 * * Os_TE_40434 Chr9 16426312 16426313 + HARB-1_OS 5166 0.0003 (1/2995) 0 * Os_TE_40433 Os_TE_40433 Chr9 16426310 16426309 - HARB-1_OS 5166 0.0003 (1/2993) 0 * Os_TE_40434 Os_TE_40410 Chr9 16417765 16417766 + RIREX_LTR 8828 0.0013 (4/2988) 0 * Os_TE_40409 Os_TE_40409 Chr9 16417761 16417760 - RIREX_LTR 8828 0.0013 (4/2987) 0 * Os_TE_40410 Os_TE_40394 Chr9 16411890 16411889 + ORSgTEMT01601591 242 0.0010 (3/2990) 0 * Os_TE_40393 Os_TE_40393 Chr9 16411887 16411888 + ORSgTEMT01601591 242 0.0010 (3/2996) 0 * Os_TE_40394 Os_TE_40368 Chr9 16401553 16396715 - ORSiTERTOOT00404 4839 0.3437 (992/2886) 1 Intact * Os_TE_40356 Chr9 16398928 16398929 - RETRO2_LTR 12874 0.0031 (9/2947) 0 * * Os_TE_40348 Chr9 16396715 16401553 + ORSiTERTOOT00404 4839 0.3406 (1004/2948) 1 Intact * Os_TE_40345 Chr9 16395578 16395577 + MPING 430 0.0003 (1/2989) 0 * * Os_TE_40342 Chr9 16392965 16392966 - COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * * Os_TE_40336 Chr9 16392001 16392000 - TYPEM 227 0.3386 (1005/2968) 0 * Os_TE_40335 Os_TE_40335 Chr9 16392000 16392001 - ORSgTEMT02400246 177 0.3410 (1019/2988) 0 * Os_TE_40336 Os_TE_40333 Chr9 16390958 16390959 - SZ-35LTR 3853 0.0021 (6/2917) 0 * Os_TE_40332 Os_TE_40332 Chr9 16390954 16390953 + RETROSAT4_LTR 13504 0.0024 (7/2920) 0 * Os_TE_40333 Os_TE_40330 Chr9 16389070 16389069 + STOWAWAY51_OS 246 0.0007 (2/2996) 0 * Os_TE_40329 Os_TE_40329 Chr9 16389064 16389065 + ORSgTEMT01601591 242 0.0007 (2/2992) 0 * Os_TE_40330 Os_TE_40325 Chr9 16386079 16386080 + ORSgTEMT04600010 284 0.0027 (8/2996) 0 * * Os_TE_40321 Chr9 16383448 16383449 + RETROSAT4_LTR 13504 0.5689 (1647/2895) 0 * Os_TE_40320 Os_TE_40320 Chr9 16383444 16383443 - RETROSAT4_LTR 13504 0.5940 (1779/2995) 0 * Os_TE_40321 Os_TE_40277 Chr9 16367701 16367463 - ORSgTEMT01601432 239 0.3257 (971/2981) 1 Intact Os_TE_40276 Os_TE_40276 Chr9 16367463 16367701 - ORSgTEMT01601696 238 0.3180 (941/2959) 1 Intact Os_TE_40277 Os_TE_40275 Chr9 16367319 16367320 - RIREX_LTR 8828 0.0673 (197/2927) 0 * Os_TE_40274 Os_TE_40274 Chr9 16367315 16367314 + RIREX_LTR 8828 0.0666 (196/2941) 0 * Os_TE_40275 Os_TE_40257 Chr9 16364358 16364359 - CACTA-M 1129 0.0007 (2/2917) 0 * Os_TE_40256 Os_TE_40256 Chr9 16364356 16364355 + CACTA-M 1129 0.0003 (1/2909) 0 * Os_TE_40257 Os_TE_40254 Chr9 16362469 16362470 - COPI2_LTR 4733 0.0010 (3/2991) 0 * * Os_TE_40253 Chr9 16360805 16360806 - ATLANTYS-LTR_OS 13740 0.0023 (7/2993) 0 * * Os_TE_40251 Chr9 16360354 16360355 + SZ-40LTR 2465 0.6765 (2024/2992) 0 * Os_TE_40250 Os_TE_40250 Chr9 16360350 16360349 - GYPSY-A_LTR 8951 0.6791 (2036/2998) 0 * Os_TE_40251 Os_TE_40249 Chr9 16359729 16359730 + Cassandra_OS-LTR 764 0.0007 (2/2986) 0 * * Os_TE_40228 Chr9 16345730 16345729 + COPIA2-LTR_OS 6433 0.0010 (1/1027) 0 * * Os_TE_40214 Chr9 16337421 16337422 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_40213 Os_TE_40213 Chr9 16337417 16337416 + COPIA2-LTR_OS 6433 0.0004 (1/2824) 0 * Os_TE_40214 Os_TE_40212 Chr9 16336212 16336213 + SC-8_LTR 4951 0.0003 (1/2982) 0 * Os_TE_40211 Os_TE_40211 Chr9 16336208 16336207 - SC-8_LTR 4951 0.0003 (1/2982) 0 * Os_TE_40212 Os_TE_40208 Chr9 16332574 16331834 - CLOUD 734 0.3360 (1000/2976) 1 Intact Os_TE_40206 Os_TE_40206 Chr9 16331834 16332574 - CLOUD 734 0.3294 (975/2960) 1 Intact Os_TE_40208 Os_TE_40189 Chr9 16327972 16327973 - SC-8_LTR 4951 0.0007 (2/2970) 0 * Os_TE_40188 Os_TE_40188 Chr9 16327968 16327967 + SC-8_LTR 4951 0.0007 (2/2967) 0 * Os_TE_40189 Os_TE_40184 Chr9 16325803 16325804 + HARB-1_OS 5166 0.0341 (102/2991) 0 * Os_TE_40183 Os_TE_40183 Chr9 16325801 16325800 - HARB-1_OS 5166 0.0341 (102/2991) 0 * Os_TE_40184 Os_TE_40158 Chr9 16311507 16311508 - INDITTO 263 0.6755 (2019/2989) 0 * Os_TE_40157 Os_TE_40157 Chr9 16311505 16311504 + INDITTO 263 0.6756 (2012/2978) 0 * Os_TE_40158 Os_TE_40152 Chr9 16311057 16311058 - AMYLTP 383 0.0003 (1/2990) 0 * * Os_TE_40150 Chr9 16310903 16310904 - AMYLTP 383 0.0027 (8/2991) 0 * * Os_TE_40148 Chr9 16308448 16308449 + TOS17LTR 138 0.0010 (3/2991) 0 * Os_TE_40147 Os_TE_40147 Chr9 16308444 16308443 - TOS17LTR 138 0.0010 (3/2992) 0 * Os_TE_40148 Os_TE_40057 Chr9 16275408 16275409 - ORSgTETNOOT00754 253 0.0007 (2/2987) 0 * Os_TE_40056 Os_TE_40056 Chr9 16275403 16275402 - ORSgTETNOOT00477 252 0.0007 (2/2990) 0 * Os_TE_40057 Os_TE_40054 Chr9 16273922 16273923 - HARB-1_OS 5166 0.0418 (125/2993) 0 * Os_TE_40053 Os_TE_40053 Chr9 16273920 16273919 + HARB-1_OS 5166 0.0411 (123/2995) 0 * Os_TE_40054 Os_TE_40037 Chr9 16270334 16270335 + DS-RICE3N 525 0.0003 (1/2958) 0 * * Os_TE_40028 Chr9 16268343 16268344 - SC-4_LTR 5218 0.0003 (1/2992) 0 * Os_TE_40027 Os_TE_40027 Chr9 16268339 16268338 + SC-4_LTR 5218 0.0007 (2/2991) 0 * Os_TE_40028 Os_TE_40025 Chr9 16268109 16268110 + AMYLTP 383 0.0017 (5/2977) 0 * Os_TE_40024 Os_TE_40024 Chr9 16268101 16268100 - AMYLTP 383 0.0027 (8/2974) 0 * Os_TE_40025 Os_TE_40021 Chr9 16266908 16266909 - RIREX_LTR 8828 0.0003 (1/2860) 0 * * Os_TE_39997 Chr9 16254204 16254205 + ORSiTERTOOT00296 5553 0.0003 (1/2990) 0 * Os_TE_39996 Os_TE_39996 Chr9 16254200 16254199 - SC-3_LTR 5748 0.0003 (1/2983) 0 * Os_TE_39997 Os_TE_39994 Chr9 16251835 16251836 + ORSiTERTOOT00033 4884 0.0003 (1/2955) 0 * Os_TE_39993 Os_TE_39993 Chr9 16251832 16251831 - RETROFIT_LTR 4866 0.0003 (1/2942) 0 * Os_TE_39994 Os_TE_39968 Chr9 16242088 16242087 - TRUNCATOR 2918 0.0031 (8/2579) 0 * * Os_TE_39887 Chr9 16203152 16208111 - TESSBIG 4057 0.3333 (996/2988) 1 Intact * Os_TE_39886 Chr9 16202717 16202718 + INDITTO 263 0.0141 (42/2988) 0 * Os_TE_39885 Os_TE_39885 Chr9 16202715 16202714 - INDITTO 263 0.0144 (43/2990) 0 * Os_TE_39886 Os_TE_39884 Chr9 16202320 16202321 + RIREX_LTR 8828 0.0003 (1/2981) 0 * Os_TE_39883 Os_TE_39883 Chr9 16202316 16202315 - RIREX_LTR 8828 0.0003 (1/2987) 0 * Os_TE_39884 Os_TE_39872 Chr9 16191944 16191943 - STOWAWAY51_OS 246 0.0003 (1/2937) 0 * * Os_TE_39867 Chr9 16191496 16191495 + STOWAWAY51_OS 246 0.0003 (1/2993) 0 * Os_TE_39866 Os_TE_39866 Chr9 16191490 16191491 - STOWAWAY51_OS 246 0.0003 (1/2995) 0 * Os_TE_39867 Os_TE_39863 Chr9 16190121 16190120 + ORSgTEMT01601591 242 0.0003 (1/2997) 0 * Os_TE_39862 Os_TE_39862 Chr9 16190115 16190116 + STOWAWAY51_OS 246 0.0003 (1/2994) 0 * Os_TE_39863 Os_TE_39844 Chr9 16186237 16186238 + STOWAWAY51_OS 246 0.1217 (339/2786) 0 * * Os_TE_39842 Chr9 16185484 16185485 - HARB-1_OS 5166 0.0003 (1/2992) 0 * Os_TE_39841 Os_TE_39841 Chr9 16185482 16185481 + HARB-1_OS 5166 0.0003 (1/2994) 0 * Os_TE_39842 Os_TE_39827 Chr9 16183298 16183299 + COPI2_LTR 4733 0.0007 (2/2995) 0 * Os_TE_39826 Os_TE_39826 Chr9 16183294 16183293 - COPI2_LTR 4733 0.0007 (2/2995) 0 * Os_TE_39827 Os_TE_39823 Chr9 16181925 16181924 - ORSgTEMT00901025 223 0.0028 (8/2890) 0 * Os_TE_39822 Os_TE_39822 Chr9 16181921 16181922 - ORSgTEMT00900563 246 0.0028 (8/2894) 0 * Os_TE_39823 Os_TE_39819 Chr9 16180388 16180387 + INDITTO 263 0.0027 (8/2986) 0 * * Os_TE_39814 Chr9 16178520 16178519 + MPING 430 0.0014 (4/2771) 0 * * Os_TE_39813 Chr9 16178406 16178407 - MICROPON-LIKE-2 102 0.0030 (8/2634) 0 * * Os_TE_39776 Chr9 16151700 16151701 + INDITTO 263 0.0020 (6/2982) 0 * Os_TE_39775 Os_TE_39775 Chr9 16151698 16151697 - INDITTO 263 0.0024 (7/2976) 0 * Os_TE_39776 Os_TE_39772 Chr9 16150552 16150553 + EnSpm-13_OS 11171 0.0003 (1/2976) 0 * Os_TE_39771 Os_TE_39771 Chr9 16150550 16150549 - EnSpm-13_OS 11171 0.0003 (1/2959) 0 * Os_TE_39772 Os_TE_39741 Chr9 16137813 16137814 - ORSiTETNOOT00134 607 0.0003 (1/2997) 0 * Os_TE_39740 Os_TE_39740 Chr9 16137806 16137805 + TWIF 586 0.0003 (1/2997) 0 * Os_TE_39741 Os_TE_39730 Chr9 16135047 16135048 + ORSiTERTOOT00074 4935 0.0098 (11/1121) 0 * Os_TE_39729 Os_TE_39729 Chr9 16135043 16135042 - ORSiTERTOOT00074 4935 0.0024 (7/2906) 0 * Os_TE_39730 Os_TE_39700 Chr9 16126027 16127194 - RPO_OS 1983 0.3268 (972/2974) 1 Intact * Os_TE_39659 Chr9 16114469 16114470 - EnSpm-13_OS 11171 0.0003 (1/2979) 0 * Os_TE_39658 Os_TE_39658 Chr9 16114467 16114466 + EnSpm-13_OS 11171 0.0003 (1/2982) 0 * Os_TE_39659 Os_TE_39644 Chr9 16111299 16111298 - INDITTO 263 0.0007 (2/2941) 0 * * Os_TE_39621 Chr9 16104689 16104690 + ORSgTEMT00600376 329 0.0010 (3/2974) 0 * Os_TE_39620 Os_TE_39620 Chr9 16104684 16104683 + ORSgTEMT00600272 361 0.0010 (3/2969) 0 * Os_TE_39621 Os_TE_39606 Chr9 16099461 16099462 + ORSiTERTOOT00296 5553 0.0150 (45/2997) 0 * Os_TE_39605 Os_TE_39605 Chr9 16099457 16099456 - SC-3_LTR 5748 0.0150 (45/2998) 0 * Os_TE_39606 Os_TE_39596 Chr9 16086535 16086536 + SC-8_LTR 4951 0.0013 (4/2988) 0 * Os_TE_39595 Os_TE_39595 Chr9 16086531 16086530 - SC-8_LTR 4951 0.0013 (4/2987) 0 * Os_TE_39596 Os_TE_39585 Chr9 16084662 16084663 + ORSgTEMT00900266 245 0.0024 (7/2928) 0 * * Os_TE_39582 Chr9 16083904 16083905 + ORSgTEMT01601122 212 0.0003 (1/2949) 0 * * Os_TE_39561 Chr9 16059298 16059297 - ORSgTEMT02000081 196 0.5546 (1513/2728) 0 * * Os_TE_39551 Chr9 16049620 16049621 - ORSgTEMT00100297 345 0.6029 (1796/2979) 0 * * Os_TE_39549 Chr9 16049136 16045558 + MERMITEA 1710 0.4788 (1266/2644) 1 Intact * Os_TE_39538 Chr9 16044538 16044539 + ORSiTERTOOT00296 5553 0.0003 (1/2997) 0 * * Os_TE_39536 Chr9 16042502 16042503 + ORSgTEMT00600448 360 0.6047 (1796/2970) 0 * * Os_TE_39535 Chr9 16042438 16042437 - COPIA2-LTR_OS 6433 0.0007 (2/2967) 0 * * Os_TE_39533 Chr9 16041256 16041255 - RETROSOR2_LTR 11699 0.6030 (1783/2957) 0 * * Os_TE_39520 Chr9 16032467 16032468 - ORSiTERTOOT00329 5144 0.0024 (3/1249) 0 * Os_TE_39519 Os_TE_39519 Chr9 16032460 16032459 + ORSiTERTOOT00329 5144 0.0024 (3/1246) 0 * Os_TE_39520 Os_TE_39511 Chr9 16029134 16028896 - ORSgTEMT01601432 239 0.8335 (1026/1231) 1 Intact Os_TE_39510 Os_TE_39510 Chr9 16028896 16029134 + ORSgTEMT01602181 239 0.8285 (990/1195) 1 Intact Os_TE_39511 Os_TE_39496 Chr9 16024973 16024974 + RIRE2_LTR 11306 0.0129 (16/1240) 0 * Os_TE_39495 Os_TE_39495 Chr9 16024969 16024968 - RIRE2_LTR 11306 0.0128 (16/1246) 0 * Os_TE_39496 Os_TE_39494 Chr9 16024552 16024332 + ORSgTEMT01602119 229 0.8446 (1179/1396) 1 Intact * Os_TE_39468 Chr9 16016468 16015875 + DS-RICE4N 715 0.4163 (1233/2962) 1 Intact * Os_TE_39450 Chr9 16005920 16005921 + RETROSAT4_LTR 13504 0.0024 (7/2971) 0 * * Os_TE_39414 Chr9 15991208 15991209 + RETROSAT4_LTR 13504 0.0003 (1/2991) 0 * * Os_TE_39357 Chr9 15961200 15961199 - SC-3_LTR 5748 0.0003 (1/2988) 0 * * Os_TE_39330 Chr9 15954228 15954229 - RIREX_LTR 8828 0.0003 (1/2995) 0 * Os_TE_39329 Os_TE_39329 Chr9 15954224 15954223 + RIREX_LTR 8828 0.0003 (1/2991) 0 * Os_TE_39330 Os_TE_39304 Chr9 15948502 15948501 - ORSgTERT00100095 237 0.0010 (3/2992) 0 * * Os_TE_39300 Chr9 15946047 15946048 - SC-8_LTR 4951 0.0003 (1/2974) 0 * Os_TE_39299 Os_TE_39299 Chr9 15946043 15946042 + SC-8_LTR 4951 0.0003 (1/2974) 0 * Os_TE_39300 Os_TE_39298 Chr9 15945196 15945197 + SC-8_LTR 4951 0.0007 (2/2997) 0 * Os_TE_39297 Os_TE_39297 Chr9 15945192 15945191 - SC-8_LTR 4951 0.0007 (2/2996) 0 * Os_TE_39298 Os_TE_39295 Chr9 15943792 15943793 - ORSgTEMT00502287 149 0.0007 (2/2986) 0 * * Os_TE_39252 Chr9 15919913 15919914 - MPING 430 0.0011 (3/2840) -1 * * Os_TE_39240 Chr9 15918495 15918496 - COPIA2-LTR_OS 6433 0.0013 (4/2987) 0 * * Os_TE_39225 Chr9 15910098 15909858 + ORSgTETNOOT00908 242 0.3490 (1044/2991) 1 Intact Os_TE_39224 Os_TE_39224 Chr9 15909858 15910097 + ORSgTETNOOT02019 240 0.3420 (1021/2985) 1 Intact Os_TE_39225 Os_TE_39220 Chr9 15908033 15904210 + RETROSAT4_LTR 13504 0.3406 (1011/2968) 1 Solo_LTR Os_TE_39218 Os_TE_39218 Chr9 15904210 15908033 - SZ-35LTR 3853 0.3461 (1031/2979) 1 Intact Os_TE_39220 Os_TE_39210 Chr9 15900990 15900989 - MUDRN3_OS 903 0.0004 (1/2725) 0 * * Os_TE_39201 Chr9 15898542 15898543 - COPI2_LTR 4733 0.0003 (1/2983) 0 * Os_TE_39200 Os_TE_39200 Chr9 15898538 15898537 + COPI2_LTR 4733 0.0003 (1/2981) 0 * Os_TE_39201 Os_TE_39137 Chr9 15871145 15871146 + MDR2 6967 0.0027 (7/2632) 0 * * Os_TE_39127 Chr9 15865971 15865972 - ORSgTEMT00600085 364 0.0860 (257/2988) 0 * Os_TE_39126 Os_TE_39126 Chr9 15865969 15865968 + CASTAWAY 364 0.0855 (255/2982) 0 * Os_TE_39127 Os_TE_39115 Chr9 15861636 15861635 - ORSgTEMT01600520 239 0.0027 (8/2985) 0 * Os_TE_39114 Os_TE_39114 Chr9 15861633 15861634 + ORSgTEMT01602051 240 0.0027 (8/2976) 0 * Os_TE_39115 Os_TE_39100 Chr9 15858180 15858179 + INDITTO 263 0.0003 (1/2992) 0 * * Os_TE_39063 Chr9 15839477 15839476 - ORSgTETNOOT01780 184 0.0004 (1/2837) 0 * * Os_TE_39056 Chr9 15838489 15838490 + COPIA2-LTR_OS 6433 0.0003 (1/2986) 0 * * Os_TE_39045 Chr9 15835729 15835730 - DS-RICE2N 613 0.0578 (169/2923) 0 * * Os_TE_39034 Chr9 15832719 15832718 - RIREX_LTR 8828 0.0004 (1/2800) 0 * * Os_TE_39029 Chr9 15828346 15828347 + COPIA2-LTR_OS 6433 0.0003 (1/2969) 0 * Os_TE_39028 Os_TE_39028 Chr9 15828342 15828341 - COPIA2-LTR_OS 6433 0.0003 (1/2966) 0 * Os_TE_39029 Os_TE_38995 Chr9 15818436 15818437 - TYPEM 227 0.0004 (1/2851) 0 * * Os_TE_38993 Chr9 15818023 15818022 + ORSgTEMT01701924 152 0.0003 (1/2907) 0 * * Os_TE_38963 Chr9 15815104 15815103 + ORSgTEMT00101674 340 0.0151 (45/2981) 0 * * Os_TE_38960 Chr9 15814515 15814516 - COPI2_LTR 4733 0.0003 (1/2992) 0 * Os_TE_38959 Os_TE_38959 Chr9 15814511 15814510 + COPI2_LTR 4733 0.0003 (1/2992) 0 * Os_TE_38960 Os_TE_38947 Chr9 15805642 15805641 - ECR 394 0.0003 (1/2928) 0 * * Os_TE_38900 Chr9 15785681 15785680 + TRUNCATOR 2918 0.0087 (26/2988) 0 * Os_TE_38899 Os_TE_38899 Chr9 15785680 15785681 - TRUNCATOR 2918 0.0080 (24/2984) 0 * Os_TE_38900 Os_TE_38891 Chr9 15782325 15782326 + ORSiTERTOOT00296 5553 0.0003 (1/2968) 0 * Os_TE_38890 Os_TE_38890 Chr9 15782321 15782320 - SC-3_LTR 5748 0.0003 (1/2969) 0 * Os_TE_38891 Os_TE_38846 Chr9 15759915 15759916 + ORSgTEMT00501279 126 0.0023 (6/2629) 0 * * Os_TE_38845 Chr9 15759814 15759815 - ORSgTEMT00901395 206 0.0027 (8/2912) 0 * * Os_TE_38837 Chr9 15759000 15758999 - ORSgTEMT00901138 254 0.0027 (8/2930) 0 * * Os_TE_38833 Chr9 15758190 15757952 - ORSgTEMT01601432 239 0.3124 (932/2983) 1 Intact * Os_TE_38830 Chr9 15756260 15756261 - ENSPM3_OS 10837 0.0027 (8/2934) 0 * Os_TE_38829 Os_TE_38829 Chr9 15756258 15756257 - TNR3 1536 0.0027 (8/2969) 0 * Os_TE_38830 Os_TE_38813 Chr9 15749284 15749283 - RIREX_LTR 8828 0.0003 (1/2997) 0 * * Os_TE_38799 Chr9 15747274 15747275 + COPIA2-LTR_OS 6433 0.0027 (8/2972) 0 * Os_TE_38798 Os_TE_38798 Chr9 15747270 15747269 - COPIA2-LTR_OS 6433 0.0020 (6/2980) 0 * Os_TE_38799 Os_TE_38787 Chr9 15745586 15745585 + F524 291 0.0031 (9/2923) 0 * * Os_TE_38765 Chr9 15728230 15740660 - RETRO2_LTR 12874 0.3414 (918/2689) 1 Intact * Os_TE_38761 Chr9 15725932 15725933 + STOWAWAY10_OS 259 0.6980 (2073/2970) 0 * * Os_TE_38753 Chr9 15721951 15721952 - ORSgTEMT01600559 234 0.5662 (1394/2462) 0 * Os_TE_38752 Os_TE_38752 Chr9 15721949 15721948 - ORSgTEMT01602467 227 0.5675 (1400/2467) 0 * Os_TE_38753 Os_TE_38715 Chr9 15710885 15710886 - MPING 430 0.0003 (1/2938) 0 * Os_TE_38714 Os_TE_38714 Chr9 15710883 15710882 + MPING 430 0.0003 (1/2916) 0 * Os_TE_38715 Os_TE_38713 Chr9 15710723 15710724 + MPING 430 0.0010 (3/2931) 0 * Os_TE_38712 Os_TE_38712 Chr9 15710721 15710720 - MPING 430 0.0010 (3/2933) 0 * Os_TE_38713 Os_TE_38711 Chr9 15710651 15710650 + ORSgTEMT06100023 259 0.6103 (1820/2982) 0 * * Os_TE_38708 Chr9 15709075 15709076 + OSTE33 1012 0.5200 (1276/2454) 0 * * Os_TE_38637 Chr9 15686395 15686396 - COPIA2-LTR_OS 6433 0.0003 (1/2953) 0 * Os_TE_38636 Os_TE_38636 Chr9 15686391 15686390 + COPIA2-LTR_OS 6433 0.0003 (1/2949) 0 * Os_TE_38637 Os_TE_38623 Chr9 15682408 15682409 - NDNA1TNA_OS 334 0.0114 (34/2976) 0 * Os_TE_38622 Os_TE_38622 Chr9 15682406 15682405 + NDNA1TNA_OS 334 0.0104 (31/2968) 0 * Os_TE_38623 Os_TE_38585 Chr9 15672235 15672234 + RIREX_LTR 8828 0.0047 (14/2948) 0 * * Os_TE_38572 Chr9 15662811 15662812 + COWARD-3 221 0.0013 (4/2970) 0 * * Os_TE_38549 Chr9 15654223 15654224 - SETARIA1 1293 0.0130 (38/2921) 0 * * Os_TE_38540 Chr9 15650443 15639289 - CACTA-H 1152 0.3103 (914/2946) 1 Intact Os_TE_38532 Os_TE_38532 Chr9 15639286 15650442 + CACTA-B 1103 0.3250 (974/2997) 1 Intact Os_TE_38540 Os_TE_38526 Chr9 15637628 15637629 + ENSPM4_OS 11610 0.0003 (1/2952) 0 * * Os_TE_38485 Chr9 15608023 15608024 + SZ-67LTR 1540 0.0023 (7/2989) 0 * * Os_TE_38483 Chr9 15607785 15607786 - MPING 430 0.0003 (1/2918) 0 * Os_TE_38482 Os_TE_38482 Chr9 15607783 15607782 + MPING 430 0.0003 (1/2984) 0 * Os_TE_38483 Os_TE_38473 Chr9 15606212 15606062 + ORSgTEMT00500512 153 0.3313 (991/2991) 1 Intact Os_TE_38471 Os_TE_38471 Chr9 15606060 15606210 - ORSgTEMT00501334 156 0.3314 (992/2993) 1 Intact Os_TE_38473 Os_TE_38467 Chr9 15603972 15603973 + SC-8_LTR 4951 0.0003 (1/2995) 0 * Os_TE_38466 Os_TE_38466 Chr9 15603968 15603967 - SC-8_LTR 4951 0.0003 (1/2996) 0 * Os_TE_38467 Os_TE_38464 Chr9 15603907 15603906 + ORSiTERTOOT00296 5553 0.0003 (1/2996) 0 * * Os_TE_38456 Chr9 15598927 15598928 + ORSiTERTOOT00296 5553 0.0003 (1/2986) 0 * Os_TE_38455 Os_TE_38455 Chr9 15598923 15598922 - SC-3_LTR 5748 0.0003 (1/2946) 0 * Os_TE_38456 Os_TE_38454 Chr9 15597773 15597774 - OSTE24 683 0.0035 (7/1993) 0 * * Os_TE_38449 Chr9 15596313 15596312 - TESS 244 0.0144 (43/2977) 0 * * Os_TE_38448 Chr9 15595971 15595970 + TREP219 104 0.0003 (1/2943) 0 * * Os_TE_38443 Chr9 15593535 15593211 + ORSgTEMT00101121 331 0.5927 (1189/2006) 1 Intact * Os_TE_38431 Chr9 15590734 15590972 - ORSgTEMT01602413 239 0.3418 (1004/2937) 1 Intact * Os_TE_38379 Chr9 15559285 15558512 - DITAILA 257 0.3342 (1000/2992) 1 Intact * Os_TE_38369 Chr9 15558393 15558392 - STOWAWAY51_OS 246 0.0003 (1/2987) 0 * Os_TE_38368 Os_TE_38368 Chr9 15558387 15558388 + STOWAWAY51_OS 246 0.0003 (1/2990) 0 * Os_TE_38369 Os_TE_38362 Chr9 15556870 15556871 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_38361 Os_TE_38361 Chr9 15556866 15556865 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_38362 Os_TE_38359 Chr9 15555925 15555926 - DITAILA 257 0.1250 (373/2984) 0 * * Os_TE_38328 Chr9 15540214 15540215 - STOWAWAY41_OS 264 0.6166 (1764/2861) 0 * * Os_TE_38320 Chr9 15534148 15534147 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * * Os_TE_38319 Chr9 15534140 15534141 + COPI2_LTR 4733 0.0003 (1/2993) 0 * * Os_TE_38317 Chr9 15532403 15532404 - MPING 430 0.0003 (1/2990) 0 * Os_TE_38316 Os_TE_38316 Chr9 15532401 15532400 + MPING 430 0.0003 (1/2993) 0 * Os_TE_38317 Os_TE_38302 Chr9 15521390 15521151 - ORSgTEMT01601696 238 0.8173 (2254/2758) 1 Intact Os_TE_38301 Os_TE_38301 Chr9 15521151 15521390 - ORSgTEMT01601834 234 0.8582 (2058/2398) 1 Intact Os_TE_38302 Os_TE_38300 Chr9 15521109 15513126 - MuDR3_OS 8604 0.2858 (707/2474) 1 Intact Os_TE_38296 Os_TE_38296 Chr9 15513122 15521109 + MuDR3_OS 8604 0.3205 (821/2562) 1 Intact Os_TE_38300 Os_TE_38257 Chr9 15504137 15504136 - TRUNCATOR 2918 0.1790 (535/2988) 0 * Os_TE_38256 Os_TE_38256 Chr9 15504136 15504137 + TRUNCATOR 2918 0.1811 (542/2993) 0 * Os_TE_38257 Os_TE_38249 Chr9 15498301 15498302 - MPING 430 0.0003 (1/2990) 0 * * Os_TE_38203 Chr9 15483074 15483075 - SZ-40LTR 2465 0.0004 (1/2789) 0 * * Os_TE_38194 Chr9 15479598 15479597 - ORSgTEMT01601432 239 0.0012 (3/2597) 0 * Os_TE_38193 Os_TE_38193 Chr9 15479595 15479596 + ORSgTEMT01601983 238 0.0012 (3/2577) 0 * Os_TE_38194 Os_TE_38190 Chr9 15477987 15477988 + RETROSAT4_LTR 13504 0.0412 (119/2887) 0 * Os_TE_38189 Os_TE_38189 Chr9 15477983 15477982 - RETROSAT4_LTR 13504 0.0402 (116/2883) 0 * Os_TE_38190 Os_TE_38178 Chr9 15475689 15475688 - TRUNCATOR 2918 0.4423 (1304/2948) 0 * Os_TE_38177 Os_TE_38177 Chr9 15475688 15475689 + TRUNCATOR 2918 0.4514 (1347/2984) 0 * Os_TE_38178 Os_TE_38136 Chr9 15460252 15459892 + ORSgTEMT00600124 361 0.4006 (967/2414) 1 Intact * Os_TE_38120 Chr9 15457396 15457397 + COPIA2-LTR_OS 6433 0.0016 (4/2456) 0 * Os_TE_38119 Os_TE_38119 Chr9 15457392 15457391 - COPIA2-LTR_OS 6433 0.0016 (4/2466) 0 * Os_TE_38120 Os_TE_38118 Chr9 15456459 15456460 - ORSgTETN00200001 10994 0.1572 (445/2830) 0 * Os_TE_38117 Os_TE_38117 Chr9 15456457 15456456 + SPMLIKE 10989 0.0653 (172/2636) 0 * Os_TE_38118 Os_TE_38116 Chr9 15456048 15456047 - ORSgTEMT01601696 238 0.0004 (1/2488) 0 * Os_TE_38115 Os_TE_38115 Chr9 15456045 15456046 + ORSgTEMT01601934 207 0.1860 (556/2990) 0 * Os_TE_38116 Os_TE_38113 Chr9 15455394 15455395 - ORSgTETNOOT01413 258 0.1844 (550/2983) 0 * Os_TE_38112 Os_TE_38112 Chr9 15455388 15455387 + ORSgTETNOOT01225 240 0.1900 (568/2989) 0 * Os_TE_38113 Os_TE_38107 Chr9 15454152 15454151 + ORSgTEMT01701224 156 0.1945 (576/2962) 0 * * Os_TE_38081 Chr9 15444081 15444082 + MPING 430 0.0004 (1/2787) 0 * Os_TE_38080 Os_TE_38080 Chr9 15444079 15444078 - MPING 430 0.0003 (1/2990) 0 * Os_TE_38081 Os_TE_38074 Chr9 15441717 15441718 + INDITTO 263 0.0003 (1/2994) 0 * Os_TE_38073 Os_TE_38073 Chr9 15441715 15441714 - INDITTO 263 0.0003 (1/2993) 0 * Os_TE_38074 Os_TE_38032 Chr9 15421014 15421015 + COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * * Os_TE_37999 Chr9 15399297 15399298 - COPIA2-LTR_OS 6433 0.0003 (1/2984) 0 * * Os_TE_37983 Chr9 15395417 15395418 + RIREX_LTR 8828 0.0003 (1/2993) 0 * * Os_TE_37959 Chr9 15390723 15390724 - HARB-1_OS 5166 0.0252 (75/2981) 0 * Os_TE_37958 Os_TE_37958 Chr9 15390721 15390720 + HARB-1_OS 5166 0.0251 (75/2985) 0 * Os_TE_37959 Os_TE_37933 Chr9 15377333 15377334 - RIREX_LTR 8828 0.0003 (1/2998) 0 * Os_TE_37932 Os_TE_37932 Chr9 15377329 15377328 + RIREX_LTR 8828 0.0003 (1/2997) 0 * Os_TE_37933 Os_TE_37921 Chr9 15373692 15373693 + RIREX_LTR 8828 0.0020 (6/2984) 0 * * Os_TE_37903 Chr9 15363990 15363991 + MDR2 6967 0.0003 (1/2982) 0 * * Os_TE_37900 Chr9 15360047 15360048 + ORSgTERT00201086 9728 0.0003 (1/2989) 0 * * Os_TE_37879 Chr9 15348568 15348569 - ORSgTEMT00400010 151 0.0004 (1/2850) 0 * * Os_TE_37852 Chr9 15337276 15337277 + COPI2_LTR 4733 0.0003 (1/2988) 0 * Os_TE_37851 Os_TE_37851 Chr9 15337272 15337271 - COPI2_LTR 4733 0.0003 (1/2981) 0 * Os_TE_37852 Os_TE_37839 Chr9 15332029 15332030 + OSTE33 1012 0.6771 (2021/2985) 0 * Os_TE_37838 Os_TE_37838 Chr9 15332020 15332019 + OSTE33 1012 0.6716 (1988/2960) 0 * Os_TE_37839 Os_TE_37828 Chr9 15325600 15325601 + AMYLTP 383 0.0003 (1/2995) 0 * Os_TE_37827 Os_TE_37827 Chr9 15325592 15325591 - AMYLTP 383 0.0003 (1/2995) 0 * Os_TE_37828 Os_TE_37818 Chr9 15321227 15321228 - SZ-55_LTR 10318 0.0007 (2/2994) 0 * Os_TE_37817 Os_TE_37817 Chr9 15321223 15321222 + SZ-55_LTR 10318 0.0007 (2/2995) 0 * Os_TE_37818 Os_TE_37808 Chr9 15315992 15315991 + MuDR3_OS 8604 0.0017 (5/2941) 0 * * Os_TE_37804 Chr9 15315898 15315899 - ORSgTEMT01602420 228 0.0007 (2/2940) 0 * * Os_TE_37802 Chr9 15315276 15298740 - MuDR-5_OS 17471 0.3274 (974/2975) 1 Intact Os_TE_37790 Os_TE_37790 Chr9 15298740 15315276 + MuDR-5_OS 17471 0.3338 (997/2987) 1 Intact Os_TE_37802 Os_TE_37778 Chr9 15295137 15294824 + STOLAB 312 0.3432 (998/2908) 1 Intact Os_TE_37777 Os_TE_37777 Chr9 15294822 15295137 - STOLAB 312 0.3351 (999/2981) 1 Intact Os_TE_37778 Os_TE_37774 Chr9 15293992 15293991 - ORSgTEMT00500589 151 0.6364 (1649/2591) 0 * * Os_TE_37763 Chr9 15287829 15287301 + CLOUD-4 520 0.3370 (1006/2985) 1 Intact * Os_TE_37727 Chr9 15272177 15272178 - HARB-1_OS 5166 0.0302 (90/2978) 0 * Os_TE_37726 Os_TE_37726 Chr9 15272175 15272174 + HARB-1_OS 5166 0.0333 (91/2736) 0 * Os_TE_37727 Os_TE_37721 Chr9 15271678 15271679 + INDITTO 263 0.0385 (115/2985) 0 * Os_TE_37720 Os_TE_37720 Chr9 15271676 15271675 - INDITTO 263 0.0352 (105/2980) 0 * Os_TE_37721 Os_TE_37718 Chr9 15271551 15270111 - DS-RICE2N 613 0.1089 (319/2928) 1 Intact * Os_TE_37708 Chr9 15267474 15267473 + NDNA1TNA_OS 334 0.2232 (667/2988) 0 * * Os_TE_37707 Chr9 15267343 15267342 + NDNA1TNA_OS 334 0.2152 (636/2956) 0 * * Os_TE_37692 Chr9 15263298 15263297 + CRMA1_LTR 7543 0.6812 (2036/2989) 0 * * Os_TE_37655 Chr9 15248092 15248091 - COPIA2-LTR_OS 6433 0.0003 (1/2894) 0 * * Os_TE_37637 Chr9 15242689 15242690 + MPING 430 0.0047 (14/2980) 0 * Os_TE_37636 Os_TE_37636 Chr9 15242687 15242686 - MPING 430 0.0050 (15/2973) 0 * Os_TE_37637 Os_TE_37635 Chr9 15242613 15242614 - INDITTO 263 0.2932 (802/2735) 0 * Os_TE_37634 Os_TE_37634 Chr9 15242611 15242610 + INDITTO 263 0.3627 (1082/2983) 0 * Os_TE_37635 Os_TE_37633 Chr9 15242542 15242543 - INDITTO 263 0.2043 (612/2996) 0 * Os_TE_37632 Os_TE_37632 Chr9 15242540 15242539 + INDITTO 263 0.3067 (611/1992) 0 * Os_TE_37633 Os_TE_37631 Chr9 15240390 15240391 - MuDR4_OS 7610 0.0017 (5/2993) 0 * Os_TE_37630 Os_TE_37630 Chr9 15240383 15240382 - MuDR4_OS 7610 0.0017 (5/2972) 0 * Os_TE_37631 Os_TE_37610 Chr9 15238249 15238248 + ORSgTETNOOT01219 231 0.0253 (71/2803) 0 * * Os_TE_37562 Chr9 15211749 15211750 - SC-3_LTR 5748 0.0003 (1/2989) 0 * Os_TE_37561 Os_TE_37561 Chr9 15211745 15211744 + ORSiTERTOOT00296 5553 0.0003 (1/2990) 0 * Os_TE_37562 Os_TE_37559 Chr9 15206880 15206881 + ORSiTERTOOT00296 5553 0.0003 (1/2991) 0 * * Os_TE_37504 Chr9 15180895 15173774 - RIREX_LTR 8828 0.0915 (273/2983) 1 Intact Os_TE_37499 Os_TE_37499 Chr9 15173774 15180895 + RIREX_LTR 8828 0.0934 (279/2988) 1 Intact Os_TE_37504 Os_TE_37477 Chr9 15170118 15170119 - RIRE2_LTR 11306 0.3626 (1079/2976) 0 * Os_TE_37476 Os_TE_37476 Chr9 15170114 15170113 + RIRE2_LTR 11306 0.3641 (1085/2980) 0 * Os_TE_37477 Os_TE_37438 Chr9 15149157 15140203 + RIREX_LTR 8828 0.2675 (275/1028) 1 Intact Os_TE_37437 Os_TE_37437 Chr9 15140203 15149157 - RIREX_LTR 8828 0.8403 (263/313) 1 Intact Os_TE_37438 Os_TE_37356 Chr9 15091726 15091727 - EnSpm-13_OS 11171 0.0003 (1/2878) 0 * Os_TE_37355 Os_TE_37355 Chr9 15091724 15091723 + EnSpm-13_OS 11171 0.0003 (1/2877) 0 * Os_TE_37356 Os_TE_37335 Chr9 15083251 15083252 - TRSA_OS 353 0.7582 (2151/2837) 0.83 * * Os_TE_37334 Chr9 15082193 15083103 - HARB-N1_OS 2589 0.0921 (263/2855) 1 Intact * Os_TE_37303 Chr9 15072341 15072102 + ORSgTEMT01601122 212 0.0860 (256/2978) 1 Intact * Os_TE_37299 Chr9 15070097 15070096 + EnSpm-N1_OS 4256 0.0003 (1/2965) 0 * Os_TE_37298 Os_TE_37298 Chr9 15070093 15070094 - EnSpm-N1_OS 4256 0.0003 (1/2965) 0 * Os_TE_37299 Os_TE_37285 Chr9 15068569 15068342 - ORSgTEMT02000034 224 0.0902 (263/2915) 1 Intact * Os_TE_37277 Chr9 15063897 15063662 + ORSgTETNOOT00908 242 0.1066 (268/2513) 1 Intact * Os_TE_37271 Chr9 15062542 15062675 - ORSgTEMT00502431 146 0.1228 (249/2027) 1 Intact * Os_TE_37270 Chr9 15062116 15061856 - ORSgTEMT00101174 225 0.0548 (140/2554) -1 Intact * Os_TE_37267 Chr9 15061563 15061849 - YOUREN 286 0.0936 (267/2853) 1 Intact * Os_TE_37264 Chr9 15061296 15061297 - GAIJIN 147 0.8820 (1928/2186) 0 * * Os_TE_37261 Chr9 15060277 15060276 + OSTE33 1012 0.2453 (733/2988) 0 * * Os_TE_37239 Chr9 15049662 15049663 + SEVERIN-2 1952 0.5677 (344/606) 0 * * Os_TE_37238 Chr9 15049493 15049492 - ORSgTEMT01601432 239 0.0015 (1/688) 0 * Os_TE_37237 Os_TE_37237 Chr9 15049490 15049491 - ORSgTEMT01601432 239 0.0015 (1/685) 0 * Os_TE_37238 Os_TE_37234 Chr9 15049316 15049317 - Mudr5_OS 5952 0.0015 (1/680) 0 * Os_TE_37233 Os_TE_37233 Chr9 15049314 15049313 + Mudr5_OS 5952 0.0015 (1/652) 0 * Os_TE_37234 Os_TE_37223 Chr9 15045371 15044762 - DS-RICE2N 613 0.0912 (271/2972) 1 Intact Os_TE_37221 Os_TE_37221 Chr9 15044762 15045371 + DS-RICE2N 613 0.0746 (217/2907) -1 Intact Os_TE_37223 Os_TE_37208 Chr9 15042247 15029389 + RETRO2A_LTR 12895 0.0966 (268/2773) 1 Intact Os_TE_37205 Os_TE_37205 Chr9 15029389 15042247 - RETRO2A_LTR 12895 0.0921 (264/2865) 1 Intact Os_TE_37208 Os_TE_37202 Chr9 15029063 15029064 - INDITTO 263 0.1978 (557/2816) 0 * Os_TE_37201 Os_TE_37201 Chr9 15029061 15029060 + INDITTO 263 0.2043 (606/2966) 0 * Os_TE_37202 Os_TE_37191 Chr9 15022011 15022012 - ORSgTETN00200001 10994 0.3437 (915/2662) 0 * Os_TE_37190 Os_TE_37190 Chr9 15022009 15022008 + SPMLIKE 10989 0.4186 (1236/2953) 0 * Os_TE_37191 Os_TE_37155 Chr9 15013297 15013298 - COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * * Os_TE_37109 Chr9 14996624 14996625 - ORSiTERT00100062 5674 0.0007 (2/2984) 0 * * Os_TE_37091 Chr9 14987611 14987612 - NDNA2TNA_OS 346 0.0007 (2/2986) 0 * * Os_TE_37065 Chr9 14981043 14981042 - INDITTO 263 0.0003 (1/2989) 0 * * Os_TE_37064 Chr9 14980838 14980839 - SPMLIKE 10989 0.0003 (1/2986) 0 * Os_TE_37063 Os_TE_37063 Chr9 14980836 14980835 + SPMLIKE 10989 0.0003 (1/2988) 0 * Os_TE_37064 Os_TE_37052 Chr9 14971327 14971328 + OSTE33 1012 0.0006 (1/1609) 0 * * Os_TE_37051 Chr9 14970095 14970096 + SZ-40LTR 2465 0.0003 (1/2962) 0 * Os_TE_37050 Os_TE_37050 Chr9 14970091 14970090 - SZ-40LTR 2465 0.0003 (1/2936) 0 * Os_TE_37051 Os_TE_37043 Chr9 14967711 14967710 + RIREX_LTR 8828 0.0003 (1/2980) 0 * * Os_TE_37033 Chr9 14966661 14966317 + NDNA2TNA_OS 346 0.3315 (985/2971) 1 Intact Os_TE_37032 Os_TE_37032 Chr9 14966317 14966661 - NDNA2TNA_OS 346 0.3334 (994/2981) 1 Intact Os_TE_37033 Os_TE_37024 Chr9 14958194 14958195 + COPIA2-LTR_OS 6433 0.0010 (3/2987) 0 * Os_TE_37023 Os_TE_37023 Chr9 14958190 14958189 - COPIA2-LTR_OS 6433 0.0017 (5/2991) 0 * Os_TE_37024 Os_TE_37021 Chr9 14957635 14957634 - RETROSAT3_LTR 11537 0.0020 (6/2982) 0 * * Os_TE_37011 Chr9 14955644 14955643 - STOWAWAY51_OS 246 0.0003 (1/2991) 0 * Os_TE_37010 Os_TE_37010 Chr9 14955638 14955639 + STOWAWAY51_OS 246 0.0003 (1/2990) 0 * Os_TE_37011 Os_TE_36997 Chr9 14950824 14950823 - ORSgTEMT02400064 212 0.0020 (6/2948) 0 * Os_TE_36996 Os_TE_36996 Chr9 14950823 14950824 - ORSgTEMT02400179 221 0.0020 (6/2936) 0 * Os_TE_36997 Os_TE_36980 Chr9 14945127 14945128 - RIREX_LTR 8828 0.0007 (2/2997) 0 * Os_TE_36979 Os_TE_36979 Chr9 14945123 14945122 + RIREX_LTR 8828 0.0007 (2/2994) 0 * Os_TE_36980 Os_TE_36949 Chr9 14934734 14934735 - MPING 430 0.2441 (731/2995) 0 * * Os_TE_36946 Chr9 14934521 14934522 + MPING 430 0.0054 (16/2955) 0 * Os_TE_36945 Os_TE_36945 Chr9 14934519 14934518 - MPING 430 0.0055 (16/2918) 0 * Os_TE_36946 Os_TE_36916 Chr9 14920211 14920212 + ORSgTEMT00501005 147 0.0020 (6/2993) 0 * * Os_TE_36913 Chr9 14917090 14917091 - SZ-38 8643 0.0005 (1/2089) -1 * * Os_TE_36907 Chr9 14914243 14914242 + SEVERIN-2 1952 0.0724 (211/2914) 0 * * Os_TE_36901 Chr9 14912723 14912724 - INDITTO 263 0.1821 (544/2988) 0 * * Os_TE_36892 Chr9 14910374 14910375 - OSMUD1 5028 0.4384 (1313/2995) 0 * * Os_TE_36886 Chr9 14908756 14908757 + COPIA2-LTR_OS 6433 0.0426 (127/2982) 0 * Os_TE_36885 Os_TE_36885 Chr9 14908755 14908754 - COPIA2-LTR_OS 6433 0.0473 (141/2983) 0 * Os_TE_36886 Os_TE_36882 Chr9 14906889 14906890 - RETRO2_LTR 12874 0.0728 (217/2980) 0 * * Os_TE_36855 Chr9 14895754 14895755 + RIREX_LTR 8828 0.0005 (1/2020) 0 * * Os_TE_36789 Chr9 14876739 14876740 - SC-3_LTR 5748 0.0007 (2/2994) 0 * * Os_TE_36787 Chr9 14874322 14874321 - ORSgTEMT02400246 177 0.0003 (1/2978) 0 * Os_TE_36786 Os_TE_36786 Chr9 14874321 14874322 - TYPEM 227 0.0003 (1/2981) 0 * Os_TE_36787 Os_TE_36785 Chr9 14874207 14874208 + SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_36784 Os_TE_36784 Chr9 14874203 14874202 - SC-8_LTR 4951 0.0003 (1/2991) 0 * Os_TE_36785 Os_TE_36764 Chr9 14861857 14861858 - TYPEM 227 0.0007 (2/2969) 0 * Os_TE_36763 Os_TE_36763 Chr9 14861856 14861855 - ORSgTEMT02400179 221 0.0017 (5/2973) 0 * Os_TE_36764 Os_TE_36752 Chr9 14858081 14857836 + ORSgTETNOOT01313 249 0.3334 (991/2972) 1 Intact Os_TE_36751 Os_TE_36751 Chr9 14857832 14858087 + ORSgTETNOOT01834 251 0.3334 (995/2984) 1 Intact Os_TE_36752 Os_TE_36730 Chr9 14852377 14852378 - ORSgTEMT00901300 218 0.0010 (3/2963) 0 * * Os_TE_36654 Chr9 14822492 14822825 + NDNA1TNA_OS 334 0.3333 (991/2973) 1 Intact * Os_TE_36602 Chr9 14808246 14808247 - ORSgTEMT02400246 177 0.2763 (819/2964) 0 * * Os_TE_36588 Chr9 14804954 14804955 - STOWAWAY8_OS 259 0.0003 (1/2914) 0 * * Os_TE_36584 Chr9 14803860 14803859 - HARB-1_OS 5166 0.0003 (1/2973) 0 * * Os_TE_36576 Chr9 14802845 14802846 - MPING 430 0.0003 (1/2981) 0 * Os_TE_36575 Os_TE_36575 Chr9 14802843 14802842 + MPING 430 0.0003 (1/2980) 0 * Os_TE_36576 Os_TE_36567 Chr9 14795995 14795996 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_36566 Os_TE_36566 Chr9 14795991 14795990 - COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_36567 Os_TE_36536 Chr9 14785106 14785105 - ORSgTEMT02400246 177 0.6765 (2026/2995) 0 * Os_TE_36535 Os_TE_36535 Chr9 14785105 14785106 - TYPEM 227 0.6736 (2012/2987) 0 * Os_TE_36536 Os_TE_36510 Chr9 14782358 14782359 - RIREX_LTR 8828 0.0003 (1/2969) 0 * Os_TE_36509 Os_TE_36509 Chr9 14782354 14782353 + RIREX_LTR 8828 0.0003 (1/2966) 0 * Os_TE_36510 Os_TE_36491 Chr9 14774608 14774607 - RIREX_LTR 8828 0.0003 (1/2986) 0 * * Os_TE_36490 Chr9 14774101 14774102 - COPI2_LTR 4733 0.0003 (1/2958) 0 * * Os_TE_36464 Chr9 14771142 14771143 + RETRO1_LTR 8314 0.6760 (1995/2951) 0 * * Os_TE_36398 Chr9 14732462 14732461 + COPIA2-LTR_OS 6433 0.0003 (1/2983) 0 * * Os_TE_36390 Chr9 14727162 14727163 - RIRE2_LTR 11306 0.0003 (1/2923) 0 * Os_TE_36389 Os_TE_36389 Chr9 14727158 14727157 + RIRE2_LTR 11306 0.0003 (1/2954) 0 * Os_TE_36390 Os_TE_36355 Chr9 14719783 14719784 - RETROSAT2LTR 12796 0.0120 (36/2995) 0 * Os_TE_36354 Os_TE_36354 Chr9 14719781 14719780 + RETROSAT2LTR 12796 0.0120 (36/2992) 0 * Os_TE_36355 Os_TE_36335 Chr9 14716790 14716789 - STOWAWAY51_OS 246 0.0007 (2/2997) 0 * Os_TE_36334 Os_TE_36334 Chr9 14716784 14716785 + STOWAWAY51_OS 246 0.0007 (2/2995) 0 * Os_TE_36335 Os_TE_36321 Chr9 14708703 14708704 + ORSgTEMT01900030 288 0.0003 (1/2975) 0 * * Os_TE_36318 Chr9 14708250 14708251 - COPI2_LTR 4733 0.0003 (1/2971) 0 * * Os_TE_36316 Chr9 14708132 14708133 - NDNA1TNA_OS 334 0.0017 (5/2965) 0 * Os_TE_36315 Os_TE_36315 Chr9 14708130 14708129 + NDNA1TNA_OS 334 0.0017 (5/2961) 0 * Os_TE_36316 Os_TE_36306 Chr9 14705981 14705982 - RIREX_LTR 8828 0.0722 (214/2965) 0 * Os_TE_36305 Os_TE_36305 Chr9 14705977 14705976 + RIREX_LTR 8828 0.0709 (210/2962) 0 * Os_TE_36306 Os_TE_36287 Chr9 14700978 14700979 + MPING 430 0.0003 (1/2965) 0 * Os_TE_36286 Os_TE_36286 Chr9 14700976 14700975 - MPING 430 0.0003 (1/2982) 0 * Os_TE_36287 Os_TE_36275 Chr9 14693524 14693525 - COPIA2-LTR_OS 6433 0.0010 (3/2989) 0 * Os_TE_36274 Os_TE_36274 Chr9 14693520 14693519 + COPIA2-LTR_OS 6433 0.0007 (2/2990) 0 * Os_TE_36275 Os_TE_36264 Chr9 14686757 14686758 + ORSgTEMT00600366 361 0.0003 (1/2989) 0 * * Os_TE_36263 Chr9 14686511 14686512 - SC-3_LTR 5748 0.0003 (1/2979) 0 * Os_TE_36262 Os_TE_36262 Chr9 14686507 14686506 + ORSiTERTOOT00296 5553 0.0007 (2/2981) 0 * Os_TE_36263 Os_TE_36255 Chr9 14683070 14683071 - SC-3_LTR 5748 0.0003 (1/2994) 0 * Os_TE_36254 Os_TE_36254 Chr9 14683066 14683065 + ORSiTERTOOT00296 5553 0.0003 (1/2993) 0 * Os_TE_36255 Os_TE_36244 Chr9 14674396 14674397 + ORSiTERTOOT00296 5553 0.0003 (1/2976) 0 * Os_TE_36243 Os_TE_36243 Chr9 14674392 14674391 - SC-3_LTR 5748 0.0003 (1/2978) 0 * Os_TE_36244 Os_TE_36225 Chr9 14664986 14664985 - RETROSAT2LTR 12796 0.0008 (1/1224) -1 * * Os_TE_36202 Chr9 14655958 14655959 - ORSgTETN00200001 10994 0.0003 (1/2985) 0 * Os_TE_36201 Os_TE_36201 Chr9 14655956 14655955 + SPMLIKE 10989 0.0003 (1/2985) 0 * Os_TE_36202 Os_TE_36155 Chr9 14645975 14645974 - RIREX_LTR 8828 0.0004 (1/2853) 0 * * Os_TE_36129 Chr9 14640128 14640127 - ORSiTETNOOT00216 3569 0.0021 (6/2880) 0 * * Os_TE_36080 Chr9 14623232 14623233 + COPIA2-LTR_OS 6433 0.0003 (1/2974) 0 * * Os_TE_36071 Chr9 14621910 14621909 + ORSgTEMT00600376 329 0.0342 (101/2952) 0 * * Os_TE_36066 Chr9 14621290 14621291 + COPIA2-LTR_OS 6433 0.0125 (37/2970) 0 * Os_TE_36065 Os_TE_36065 Chr9 14621286 14621285 - COPIA2-LTR_OS 6433 0.0141 (42/2974) 0 * Os_TE_36066 Os_TE_36056 Chr9 14616267 14616266 + COPI2_LTR 4733 0.0003 (1/2939) 0 * * Os_TE_36005 Chr9 14598596 14598595 - RIRE2_LTR 11306 0.0003 (1/2994) 0 * * Os_TE_35978 Chr9 14585291 14585292 + MPING 430 0.0086 (25/2911) 0 * Os_TE_35977 Os_TE_35977 Chr9 14585289 14585288 - MPING 430 0.0080 (24/2996) 0 * Os_TE_35978 Os_TE_35973 Chr9 14583739 14583740 + INDITTO 263 0.0010 (3/2868) 0 * Os_TE_35972 Os_TE_35972 Chr9 14583737 14583736 - INDITTO 263 0.0010 (3/2868) 0 * Os_TE_35973 Os_TE_35953 Chr9 14580982 14580983 + AMYLTP 383 0.0665 (199/2992) 0 * Os_TE_35952 Os_TE_35952 Chr9 14580974 14580973 - AMYLTP 383 0.0662 (198/2990) 0 * Os_TE_35953 Os_TE_35915 Chr9 14575290 14575291 - AMYLTP 383 0.0013 (4/2969) 0 * * Os_TE_35884 Chr9 14562036 14562035 + RIREX_LTR 8828 0.0010 (3/2993) 0 * * Os_TE_35867 Chr9 14557374 14557375 - SC-8_LTR 4951 0.0003 (1/2994) 0 * Os_TE_35866 Os_TE_35866 Chr9 14557370 14557369 + SC-8_LTR 4951 0.0003 (1/2996) 0 * Os_TE_35867 Os_TE_35829 Chr9 14526520 14526519 + TRUNCATOR 2918 0.0013 (3/2349) 0 * * Os_TE_35809 Chr9 14518653 14518652 - TRUNCATOR 2918 0.0007 (2/2992) 0 * Os_TE_35808 Os_TE_35808 Chr9 14518652 14518653 + TRUNCATOR 2918 0.0010 (3/2998) 0 * Os_TE_35809 Os_TE_35778 Chr9 14475930 14475929 - ORSgTETNOOT02565 240 0.4579 (1361/2972) 0 * * Os_TE_35775 Chr9 14474601 14474600 - ENSPM4_OS 11610 0.0013 (4/2983) 0 * * Os_TE_35708 Chr9 14460851 14460618 - ORSgTETNOOT02539 260 0.8373 (2419/2889) 1 Intact Os_TE_35706 Os_TE_35706 Chr9 14460606 14460849 - ORSgTETNOOT02280 263 0.8242 (2443/2964) 1 Intact Os_TE_35708 Os_TE_35705 Chr9 14460490 14460491 - NDNA1TNA_OS 334 0.0265 (78/2939) 0 * Os_TE_35704 Os_TE_35704 Chr9 14460487 14460486 + NDNA1TNA_OS 334 0.0256 (75/2930) 0 * Os_TE_35705 Os_TE_35703 Chr9 14460225 14459990 - TOURIST-XV 239 0.8095 (2274/2809) 1 Intact * Os_TE_35699 Chr9 14459305 14459449 - TNR2A 152 0.8200 (2447/2984) 1 Intact * Os_TE_35691 Chr9 14455191 14455192 - ORSgTEMT02400246 177 0.6910 (2037/2948) 0 * * Os_TE_35607 Chr9 14404486 14404487 + ORSiTETNOOT00147 3619 0.0220 (65/2959) 0 * Os_TE_35606 Os_TE_35606 Chr9 14404479 14404478 - ORSiTETNOOT00147 3619 0.0150 (44/2939) 0 * Os_TE_35607 Os_TE_35605 Chr9 14403124 14403125 - RETROSAT2LTR 12796 0.0050 (15/2986) 0 * Os_TE_35604 Os_TE_35604 Chr9 14403122 14403121 + RETROSAT2LTR 12796 0.0050 (15/2989) 0 * Os_TE_35605 Os_TE_35603 Chr9 14403088 14403089 + TWIFBIG 3567 0.0033 (10/2987) 0 * Os_TE_35602 Os_TE_35602 Chr9 14403081 14403080 - ORSiTETNOOT00216 3569 0.0040 (12/2983) 0 * Os_TE_35603 Os_TE_35586 Chr9 14401373 14401374 + RETRO2_LTR 12874 0.0010 (3/2995) 0 * * Os_TE_35564 Chr9 14384635 14384636 - AMYLTP 383 0.0013 (4/2968) 0 * Os_TE_35563 Os_TE_35563 Chr9 14384627 14384626 + AMYLTP 383 0.0014 (4/2942) 0 * Os_TE_35564 Os_TE_35557 Chr9 14375847 14375848 + COPIA2-LTR_OS 6433 0.0040 (12/2982) 0 * Os_TE_35556 Os_TE_35556 Chr9 14375843 14375842 - COPIA2-LTR_OS 6433 0.0040 (12/2984) 0 * Os_TE_35557 Os_TE_35552 Chr9 14373844 14373845 + STOWAWAY13_OS 251 0.6853 (1940/2831) 0 * * Os_TE_35545 Chr9 14372191 14372190 - TYPEM 227 0.0010 (3/2988) 0 * Os_TE_35544 Os_TE_35544 Chr9 14372190 14372191 + ORSgTEMT02400206 225 0.0017 (5/2986) 0 * Os_TE_35545 Os_TE_35538 Chr9 14367011 14367012 - DASIA-2 1198 0.8794 (2589/2944) 0 * * Os_TE_35533 Chr9 14365541 14365542 + ORSiTERTOOT00296 5553 0.0003 (1/2992) 0 * Os_TE_35532 Os_TE_35532 Chr9 14365537 14365536 - SC-3_LTR 5748 0.0003 (1/2991) 0 * Os_TE_35533 Os_TE_35530 Chr9 14364507 14364508 - STOWAWAY13_OS 251 0.0017 (5/2990) 0 * * Os_TE_35524 Chr9 14362219 14362218 - STOWAWAY12_OS 312 0.0004 (1/2499) 0 * * Os_TE_35520 Chr9 14359149 14359148 + ORSgTETNOOT00908 242 0.4997 (1496/2994) 0 * * Os_TE_35519 Chr9 14359035 14359036 - F569 228 0.0241 (72/2990) 0 * Os_TE_35518 Os_TE_35518 Chr9 14359033 14359032 + F569 228 0.0241 (72/2990) 0 * Os_TE_35519 Os_TE_35513 Chr9 14357584 14357583 - TRUNCATOR 2918 0.0218 (65/2979) 0 * Os_TE_35512 Os_TE_35512 Chr9 14357583 14357584 + TRUNCATOR 2918 0.0264 (79/2987) 0 * Os_TE_35513 Os_TE_35500 Chr9 14350629 14350630 - ORSiTERTOOT00074 4935 0.0010 (3/2995) 0 * * Os_TE_35404 Chr9 14250701 14250700 - ORSgTEMT01602413 239 0.0013 (4/2973) 0 * * Os_TE_35309 Chr9 14202170 14202171 + MUDRN5_OS 374 0.0003 (1/2989) 0 * * Os_TE_35268 Chr9 14187604 14187603 + MDR2 6967 0.0007 (2/2995) 0 * * Os_TE_35262 Chr9 14185669 14185670 + ORSgTEMT01601122 212 0.0004 (1/2834) 0 * * Os_TE_35256 Chr9 14184585 14184586 - ORSiTERTOOT00183 3603 0.0004 (1/2305) 0 * * Os_TE_35253 Chr9 14182319 14169461 - RETRO1_LTR 8314 0.1290 (351/2721) 1 Intact * Os_TE_35227 Chr9 14163380 14163379 + RETROSAT2LTRA 3112 0.2007 (577/2875) 0 * * Os_TE_35225 Chr9 14162968 14162967 + COPI2_LTR 4733 0.0010 (3/2981) 0 * * Os_TE_35220 Chr9 14162090 14162089 - RIREX_LTR 8828 0.0258 (76/2949) 0 * * Os_TE_35203 Chr9 14151522 14151523 + SZ-9LTR 965 0.0010 (3/2981) 0 * Os_TE_35202 Os_TE_35202 Chr9 14151518 14151517 - SZ-9LTR 965 0.0010 (3/2975) 0 * Os_TE_35203 Os_TE_35141 Chr9 14137232 14133228 - RETROSAT4_LTR 13504 0.8826 (2090/2368) 1 Solo_LTR Os_TE_35136 Os_TE_35136 Chr9 14133228 14137234 + RETROSAT4_LTR 13504 0.7003 (2080/2970) 1 Solo_LTR Os_TE_35141 Os_TE_35132 Chr9 14131684 14131809 + SINE1OS 127 0.1581 (358/2264) 1 Intact * Os_TE_35117 Chr9 14127367 14127368 + TRUNCATOR 2918 0.1976 (589/2981) 0 * * Os_TE_35094 Chr9 14121809 14121808 - ORSgTERT00100409 3526 0.0009 (1/1127) 0 * * Os_TE_35082 Chr9 14118720 14118719 + ORSgTETNOOT00908 242 0.0003 (1/2990) 0 * * Os_TE_35076 Chr9 14113045 14113044 - SC-3_LTR 5748 0.0007 (2/2993) 0 * * Os_TE_35031 Chr9 14101563 14101564 + COPIA2-LTR_OS 6433 0.0024 (7/2947) 0 * Os_TE_35030 Os_TE_35030 Chr9 14101559 14101558 - COPIA2-LTR_OS 6433 0.0024 (7/2955) 0 * Os_TE_35031 Os_TE_35007 Chr9 14093508 14093509 + SZ-48LTR 3632 0.1132 (336/2967) 0 * Os_TE_35006 Os_TE_35006 Chr9 14093504 14093503 - SZ-48LTR 3632 0.1138 (338/2971) 0 * Os_TE_35007 Os_TE_34992 Chr9 14088480 14088479 - COPIA2-LTR_OS 6433 0.2213 (652/2946) 0 * * Os_TE_34972 Chr9 14082044 14082045 + COPI2_LTR 4733 0.0017 (5/2979) 0 * Os_TE_34971 Os_TE_34971 Chr9 14082040 14082039 - COPI2_LTR 4733 0.0024 (7/2976) 0 * Os_TE_34972 Os_TE_34970 Chr9 14081925 14081926 + MPING 430 0.0003 (1/2968) 0 * Os_TE_34969 Os_TE_34969 Chr9 14081923 14081922 - MPING 430 0.0003 (1/2967) 0 * Os_TE_34970 Os_TE_34959 Chr9 14079869 14079096 - MUDRN1_OS 764 0.3344 (966/2889) 1 Intact Os_TE_34956 Os_TE_34956 Chr9 14079096 14079869 + MUDRN1_OS 764 0.3240 (930/2870) 1 Intact Os_TE_34959 Os_TE_34952 Chr9 14078829 14078830 + STOWAWAY51_OS 246 0.0007 (2/2844) 0 * * Os_TE_34925 Chr9 14072729 14072730 - INDITTO 263 0.0003 (1/2962) 0 * Os_TE_34924 Os_TE_34924 Chr9 14072727 14072726 + INDITTO 263 0.0003 (1/2955) 0 * Os_TE_34925 Os_TE_34921 Chr9 14071937 14071938 + ORSgTEMT00101674 340 0.1484 (435/2931) 0 * * Os_TE_34916 Chr9 14065796 14065797 + GYPSY-A_LTR 8951 0.0003 (1/2997) 0 * * Os_TE_34909 Chr9 14063476 14063477 - COPIA2-LTR_OS 6433 0.0007 (2/2969) 0 * Os_TE_34908 Os_TE_34908 Chr9 14063472 14063471 + COPIA2-LTR_OS 6433 0.0007 (2/2973) 0 * Os_TE_34909 Os_TE_34897 Chr9 14055944 14055731 + ORSgTETNOOT01084 214 0.1183 (353/2984) 1 Intact Os_TE_34896 Os_TE_34896 Chr9 14055731 14055933 - ORSgTETNOOT01084 214 0.1108 (329/2970) 1 Intact Os_TE_34897 Os_TE_34868 Chr9 14043228 14043227 + DS-RICE2N 613 0.0332 (98/2948) 0 * * Os_TE_34851 Chr9 14039541 14039542 + ORSgTETNOOT00908 242 0.0003 (1/2930) 0 * * Os_TE_34841 Chr9 14037121 14037122 + SZ-9LTR 965 0.0013 (4/2978) 0 * Os_TE_34840 Os_TE_34840 Chr9 14037117 14037116 - SZ-9LTR 965 0.0013 (4/2978) 0 * Os_TE_34841 Os_TE_34831 Chr9 14034857 14034856 - STOWAWAY51_OS 246 0.0003 (1/2979) 0 * Os_TE_34830 Os_TE_34830 Chr9 14034854 14034855 + ORSgTEMT01601591 242 0.0003 (1/2960) 0 * Os_TE_34831 Os_TE_34826 Chr9 14034328 14034329 - ORSgTEMT01400006 213 0.0861 (228/2647) 0 * * Os_TE_34825 Chr9 14034006 14034005 - COPIA2-LTR_OS 6433 0.0003 (1/2957) 0 * * Os_TE_34789 Chr9 14019344 14019345 - TNR12 528 0.0080 (1/125) 0 * * Os_TE_34787 Chr9 14017951 14017950 - NDNA1TNA_OS 334 0.0968 (290/2996) 0 * Os_TE_34786 Os_TE_34786 Chr9 14017944 14017945 + ORSgTEMT00101341 314 0.0973 (291/2991) 0 * Os_TE_34787 Os_TE_34775 Chr9 14012381 14012380 - SZ-62LTR 3649 0.0017 (5/2973) 0 * * Os_TE_34721 Chr9 13992843 13992844 - SZ-22_LTR 4403 0.0003 (1/2947) 0 * * Os_TE_34677 Chr9 13983013 13983014 - MERMITEA 1710 0.0013 (4/2972) 0 * * Os_TE_34657 Chr9 13977600 13977601 + RETROSAT4_LTR 13504 0.0476 (142/2981) 0 * * Os_TE_34630 Chr9 13972337 13972338 + RIREX_LTR 8828 0.0068 (20/2939) 0 * Os_TE_34629 Os_TE_34629 Chr9 13972333 13972332 - RIREX_LTR 8828 0.0078 (23/2948) 0 * Os_TE_34630 Os_TE_34607 Chr9 13967837 13967836 - TRUNCATOR 2918 0.0792 (227/2866) 0 * Os_TE_34606 Os_TE_34606 Chr9 13967836 13967837 + TRUNCATOR 2918 0.1034 (303/2929) 0 * Os_TE_34607 Os_TE_34602 Chr9 13966012 13966013 + RETRO2A_LTR 12895 0.0003 (1/2965) 0 * Os_TE_34601 Os_TE_34601 Chr9 13966008 13966007 - RETRO1_LTR 8314 0.0003 (1/2964) 0 * Os_TE_34602 Os_TE_34598 Chr9 13965032 13965031 - SZ-35LTR 3853 0.0057 (17/2982) 0 * * Os_TE_34597 Chr9 13964497 13953179 + CACTA-B 1103 0.8721 (2611/2994) 1 Intact Os_TE_34589 Os_TE_34589 Chr9 13953179 13964494 - ORSgTETN00200001 10994 0.8692 (2566/2952) 1 Intact Os_TE_34597 Os_TE_34588 Chr9 13952557 13952558 - RIREX_LTR 8828 0.0017 (5/2983) 0 * Os_TE_34587 Os_TE_34587 Chr9 13952553 13952552 + RIREX_LTR 8828 0.0017 (5/2981) 0 * Os_TE_34588 Os_TE_34579 Chr9 13951106 13951105 + ORSgTERT00100348 274 0.0003 (1/2928) 0 * * Os_TE_34555 Chr9 13947014 13947015 - MERMITE18E 1528 0.0003 (1/2944) 0 * * Os_TE_34537 Chr9 13943101 13943100 - STOWAWAY51_OS 246 0.0007 (2/2749) 0 * Os_TE_34536 Os_TE_34536 Chr9 13943098 13943099 - STOWAWAY51_OS 246 0.0007 (2/2744) 0 * Os_TE_34537 Os_TE_34521 Chr9 13940077 13940078 - EnSpm-13_OS 11171 0.0290 (81/2790) 0 * * Os_TE_34517 Chr9 13939263 13939264 - COPIA2-LTR_OS 6433 0.0004 (1/2469) 0 * Os_TE_34516 Os_TE_34516 Chr9 13939259 13939258 + COPIA2-LTR_OS 6433 0.0004 (1/2475) 0 * Os_TE_34517 Os_TE_34511 Chr9 13937063 13937064 - EnSpm-13_OS 11171 0.0007 (2/2976) 0 * * Os_TE_34509 Chr9 13935693 13935694 - SZ-28LTR 262 0.0058 (16/2762) 0 * Os_TE_34508 Os_TE_34508 Chr9 13935689 13935688 + SZ-28LTR 262 0.0884 (264/2987) 0 * Os_TE_34509 Os_TE_34504 Chr9 13934449 13934448 + EnSpm-13_OS 11171 0.0007 (2/2980) 0 * * Os_TE_34486 Chr9 13932329 13932328 - SZ-55_LTR 10318 0.0004 (1/2687) 0 * * Os_TE_34454 Chr9 13923862 13923861 - ORSgTEMT01700044 149 0.0758 (225/2968) 0 * * Os_TE_34449 Chr9 13922583 13922584 - SZ-35LTR 3853 0.0951 (234/2460) -1 * * Os_TE_34393 Chr9 13901225 13901224 - GAIJIN 147 0.0010 (3/2974) 0 * * Os_TE_34371 Chr9 13893673 13893674 + ORSiTERTOOT00296 5553 0.0017 (5/2991) 0 * Os_TE_34370 Os_TE_34370 Chr9 13893669 13893668 - SC-3_LTR 5748 0.0017 (5/2991) 0 * Os_TE_34371 Os_TE_34351 Chr9 13875262 13875263 - ORSiTETNOOT00134 607 0.0014 (4/2940) 0 * Os_TE_34350 Os_TE_34350 Chr9 13875255 13875254 + TWIF 586 0.0017 (5/2947) 0 * Os_TE_34351 Os_TE_34290 Chr9 13863112 13863113 + NDNA1TNA_OS 334 0.0601 (177/2944) 0 * Os_TE_34289 Os_TE_34289 Chr9 13863110 13863109 - NDNA1TNA_OS 334 0.0592 (174/2940) 0 * Os_TE_34290 Os_TE_34249 Chr9 13851831 13851832 - DS-RICE2N 613 0.0365 (109/2983) 0 * Os_TE_34248 Os_TE_34248 Chr9 13851824 13851823 + DS-RICE2N 613 0.0375 (112/2984) 0 * Os_TE_34249 Os_TE_34154 Chr9 13818761 13818762 - SEVERIN-2 1952 0.0296 (85/2870) 0 * * Os_TE_34150 Chr9 13817502 13817503 - DNAUN1_OS 408 0.0300 (81/2696) 0 * * Os_TE_34043 Chr9 13771699 13771698 - TRUNCATOR2_LTR 2904 0.0019 (5/2613) 0 * * Os_TE_34025 Chr9 13767318 13767319 + COPIA2-LTR_OS 6433 0.0017 (5/2983) 0 * Os_TE_34024 Os_TE_34024 Chr9 13767314 13767313 - COPIA2-LTR_OS 6433 0.0017 (5/2977) 0 * Os_TE_34025 Os_TE_34005 Chr9 13762433 13762434 - MPING 430 0.0003 (1/2991) 0 * Os_TE_34004 Os_TE_34004 Chr9 13762431 13762430 + MPING 430 0.0003 (1/2993) 0 * Os_TE_34005 Os_TE_34000 Chr9 13760702 13760701 + STOWAWAY51_OS 246 0.0003 (1/2997) 0 * Os_TE_33999 Os_TE_33999 Chr9 13760696 13760697 - STOWAWAY51_OS 246 0.0003 (1/2998) 0 * Os_TE_34000 Os_TE_33961 Chr9 13744381 13744382 - COPIA2-LTR_OS 6433 0.0007 (2/2783) 0 * Os_TE_33960 Os_TE_33960 Chr9 13744377 13744376 + COPIA2-LTR_OS 6433 0.0004 (1/2754) 0 * Os_TE_33961 Os_TE_33957 Chr9 13743600 13743599 + SPMLIKE 10989 0.0003 (1/2988) 0 * * Os_TE_33955 Chr9 13742172 13740485 + ENSPM4_OS 11610 0.1270 (349/2747) 1 Intact * Os_TE_33891 Chr9 13720594 13720595 + TRUNCATOR2_LTR 2904 0.0003 (1/2963) 0 * Os_TE_33890 Os_TE_33890 Chr9 13720590 13720589 - TRUNCATOR2_LTR 2904 0.0003 (1/2962) 0 * Os_TE_33891 Os_TE_33886 Chr9 13717739 13717738 + STOWAWAY51_OS 246 0.0003 (1/2881) 0 * Os_TE_33885 Os_TE_33885 Chr9 13717733 13717734 - STOWAWAY51_OS 246 0.0003 (1/2917) 0 * Os_TE_33886 Os_TE_33863 Chr9 13705129 13705130 - INDITTO 263 0.5628 (1641/2916) 0 * * Os_TE_33818 Chr9 13698877 13698878 + ORSiTERTOOT00296 5553 0.0010 (3/2988) 0 * Os_TE_33817 Os_TE_33817 Chr9 13698873 13698872 - SC-3_LTR 5748 0.0010 (3/2989) 0 * Os_TE_33818 Os_TE_33806 Chr9 13691324 13691325 - SC-3_LTR 5748 0.0003 (1/2975) 0 * Os_TE_33805 Os_TE_33805 Chr9 13691320 13691319 + ORSiTERTOOT00296 5553 0.0003 (1/2979) 0 * Os_TE_33806 Os_TE_33801 Chr9 13687451 13687452 + HARB-1_OS 5166 0.0004 (1/2815) 0 * Os_TE_33800 Os_TE_33800 Chr9 13687449 13687448 - HARB-1_OS 5166 0.0003 (1/2979) 0 * Os_TE_33801 Os_TE_33797 Chr9 13686525 13686526 - ORSgTEMT01601432 239 0.0003 (1/2942) 0 * * Os_TE_33757 Chr9 13666458 13666459 + MPING 430 0.0007 (2/2792) 0 * Os_TE_33756 Os_TE_33756 Chr9 13666456 13666455 - MPING 430 0.0007 (2/2832) 0 * Os_TE_33757 Os_TE_33750 Chr9 13663761 13663762 + ORSiTERTOOT00074 4935 0.0309 (92/2982) 0 * * Os_TE_33747 Chr9 13663487 13663488 - RIREX_LTR 8828 0.0003 (1/2935) 0 * * Os_TE_33745 Chr9 13663031 13663030 + TREP219 104 0.0008 (2/2656) 0 * * Os_TE_33741 Chr9 13660536 13660537 - MPING 430 0.0014 (4/2883) 0 * Os_TE_33740 Os_TE_33740 Chr9 13660534 13660533 + MPING 430 0.0013 (4/2963) 0 * Os_TE_33741 Os_TE_33733 Chr9 13658782 13658520 - INDITTO 263 0.2528 (745/2947) 1 Intact Os_TE_33730 Os_TE_33730 Chr9 13658520 13658782 + INDITTO 263 0.2508 (736/2935) 1 Intact Os_TE_33733 Os_TE_33694 Chr9 13653145 13653144 - SZ-22_LTR 4403 0.0003 (1/2972) 0 * * Os_TE_33686 Chr9 13652017 13652018 - MPING 430 0.0003 (1/2877) 0 * Os_TE_33685 Os_TE_33685 Chr9 13652015 13652014 + MPING 430 0.0003 (1/2928) 0 * Os_TE_33686 Os_TE_33684 Chr9 13651959 13645484 - COPIA2-LTR_OS 6433 0.0627 (187/2981) 1 Intact Os_TE_33683 Os_TE_33683 Chr9 13645484 13651959 + COPIA2-LTR_OS 6433 0.0618 (184/2977) 1 Intact Os_TE_33684 Os_TE_33663 Chr9 13642639 13642640 - RIREX_LTR 8828 0.1333 (399/2994) 0 * Os_TE_33662 Os_TE_33662 Chr9 13642635 13642634 + RIREX_LTR 8828 0.1321 (395/2990) 0 * Os_TE_33663 Os_TE_33660 Chr9 13641833 13641834 + RETRO2A_LTR 12895 0.0047 (14/2962) 0 * Os_TE_33659 Os_TE_33659 Chr9 13641829 13641828 - RETRO1_LTR 8314 0.0047 (14/2971) 0 * Os_TE_33660 Os_TE_33657 Chr9 13641733 13641734 + STOWAWAY11_OS 292 0.7423 (2203/2968) 0 * * Os_TE_33644 Chr9 13638067 13638068 - ORSgTETNOOT01930 140 0.0017 (5/2988) 0 * Os_TE_33643 Os_TE_33643 Chr9 13638065 13638064 + ORSgTETNOOT01930 140 0.0017 (5/2985) 0 * Os_TE_33644 Os_TE_33622 Chr9 13634034 13634035 - STOWAWAY15_OS 145 0.0017 (5/2966) 0 * * Os_TE_33606 Chr9 13630295 13630296 - SZ-35LTR 3853 0.0014 (4/2950) 0 * Os_TE_33605 Os_TE_33605 Chr9 13630291 13630290 + RETROSAT4_LTR 13504 0.0010 (3/2952) 0 * Os_TE_33606 Os_TE_33411 Chr9 13609658 13609659 + TRSA_OS 353 0.0005 (1/2014) -1 * * Os_TE_33354 Chr9 13585455 13585454 + TYPEH 309 0.0698 (192/2750) 0 * * Os_TE_33347 Chr9 13584669 13584670 + ORSgTEMT01400009 212 0.0682 (204/2991) 0 * * Os_TE_33334 Chr9 13579697 13579698 + CACTA-H 1152 0.0315 (94/2980) 0 * * Os_TE_33328 Chr9 13579128 13579127 + ORSgTEMT00901862 245 0.0692 (204/2948) 0 * * Os_TE_33318 Chr9 13569190 13569191 - MERMITE18B 1306 0.0697 (207/2970) 0 * * Os_TE_33292 Chr9 13560588 13560589 - RETRO1_LTR 8314 0.0003 (1/2995) 0 * * Os_TE_33278 Chr9 13556914 13556915 - OSTE14 885 0.0007 (2/2994) 0 * Os_TE_33277 Os_TE_33277 Chr9 13556912 13556911 + OSTE14 885 0.0007 (2/2994) 0 * Os_TE_33278 Os_TE_33243 Chr9 13545916 13545915 - RIREX_LTR 8828 0.0003 (1/2878) 0 * * Os_TE_33232 Chr9 13539975 13539974 - COPI2_LTR 4733 0.0007 (2/2889) 0 * * Os_TE_33230 Chr9 13538797 13538796 - INDITTO 263 0.0003 (1/2901) 0 * * Os_TE_33207 Chr9 13518543 13517103 + TNR2 157 0.8395 (1611/1919) 1 Intact * Os_TE_32998 Chr9 13433442 13433443 - TYPEM 227 0.0010 (3/2884) 0 * * Os_TE_32990 Chr9 13432739 13432738 - ORSgTEMT00502287 149 0.0014 (4/2860) 0 * * Os_TE_32957 Chr9 13414867 13414868 + TYPEU1 380 0.0004 (1/2795) 0 * * Os_TE_32949 Chr9 13414431 13414432 + TRUNCATOR 2918 0.0004 (1/2775) 0 * * Os_TE_32944 Chr9 13413002 13413003 - EnSpm-13_OS 11171 0.0004 (1/2768) 0 * * Os_TE_32940 Chr9 13412851 13412850 + RIRE3_LTR 12054 0.0108 (31/2873) 0 * * Os_TE_32928 Chr9 13398890 13398891 - ORSiTERT00200154 9386 0.0965 (99/1026) 0 * Os_TE_32927 Os_TE_32927 Chr9 13398884 13398883 + TRUNCATOR 2918 0.0957 (98/1024) 0 * Os_TE_32928 Os_TE_32704 Chr9 13314415 13310842 - ORSiTETNOOT00200 3563 0.2459 (687/2794) 1 Intact Os_TE_32703 Os_TE_32703 Chr9 13310842 13314414 + TWIFBIG 3567 0.2476 (695/2807) 1 Intact Os_TE_32704 Os_TE_32668 Chr9 13295816 13296008 - ORSgTEMT02400224 209 0.2720 (779/2864) 1 Intact * Os_TE_32510 Chr9 13233330 13233331 + RIRE3A_LTR 10580 0.0007 (2/2859) 0 * * Os_TE_32476 Chr9 13216651 13216652 - SPMLIKE 10989 0.0003 (1/2915) 0 * Os_TE_32475 Os_TE_32475 Chr9 13216649 13216648 + SPMLIKE 10989 0.0003 (1/2913) 0 * Os_TE_32476 Os_TE_32428 Chr9 13200544 13200545 + INDITTO 263 0.0067 (19/2833) 0 * Os_TE_32427 Os_TE_32427 Chr9 13200542 13200541 - INDITTO 263 0.0067 (19/2823) 0 * Os_TE_32428 Os_TE_32321 Chr9 13166472 13166473 + COPIA3-LTR_OS 5061 0.0018 (5/2781) 0 * Os_TE_32320 Os_TE_32320 Chr9 13166468 13166467 - COPIA3-LTR_OS 5061 0.0018 (5/2786) 0 * Os_TE_32321 Os_TE_32318 Chr9 13163919 13163918 - ORSgTEMT02000040 196 0.0003 (1/2970) 0 * * Os_TE_32317 Chr9 13163600 13163601 - ORSiTETNOOT00216 3569 0.5934 (1741/2934) 0 * * Os_TE_32301 Chr9 13161959 13161960 + ORSgTEMT00901278 257 0.0003 (1/2982) 0 * Os_TE_32300 Os_TE_32300 Chr9 13161958 13161957 + ORSgTEMT00901557 189 0.0003 (1/2989) 0 * Os_TE_32301 Os_TE_32299 Chr9 13161728 13161727 + OLO24 345 0.0017 (5/2985) 0 * * Os_TE_32297 Chr9 13160965 13160964 - ORSgTEMT01600639 228 0.0424 (126/2969) 0 * Os_TE_32296 Os_TE_32296 Chr9 13160962 13160963 - ORSgTEMT01601208 238 0.0624 (126/2018) 0 * Os_TE_32297 Os_TE_32295 Chr9 13160835 13160229 - ORSiTETNOOT00134 607 0.0888 (261/2938) 1 Intact * Os_TE_32292 Chr9 13159943 13160206 - STOWAWAY45_OS 266 0.8621 (875/1015) 1 Intact * Os_TE_32287 Chr9 13156245 13159886 - MERMITE18E 1528 0.3372 (907/2690) 1 Intact * Os_TE_32283 Chr9 13155197 13155198 + ORSiTERT00200069 6058 0.0004 (1/2809) 0 * * Os_TE_32276 Chr9 13154510 13154171 + ORSgTEMT00100949 340 0.8241 (2361/2865) 1 Intact Os_TE_32272 Os_TE_32272 Chr9 13154171 13154508 + ORSgTEMT00101674 340 0.8252 (2360/2860) 1 Intact Os_TE_32276 Os_TE_32255 Chr9 13150257 13150258 + RETRO2_LTR 12874 0.6036 (1797/2977) 0 * Os_TE_32254 Os_TE_32254 Chr9 13150253 13150252 - RETRO2_LTR 12874 0.6036 (1798/2979) 0 * Os_TE_32255 Os_TE_32253 Chr9 13150250 13150251 + RETRO2_LTR 12874 0.6039 (1799/2979) 0 * * Os_TE_32247 Chr9 13147342 13147343 + INDITTO 263 0.0003 (1/2960) 0 * * Os_TE_32195 Chr9 13118132 13118133 + ORSgTEMT00600124 361 0.0004 (1/2667) 0 * * Os_TE_32181 Chr9 13114113 13111021 - RETROSAT2LTRA 3112 0.0954 (273/2863) 1 Intact Os_TE_32179 Os_TE_32179 Chr9 13102534 13114113 + RETROSAT3_LTR 11537 0.1107 (263/2375) 1 Intact Os_TE_32181 Os_TE_32152 Chr9 13096630 13096631 + MERMITE18D 1491 0.1687 (458/2715) 0 * * Os_TE_32066 Chr9 13040474 13052016 - ORSgTETN00200001 10994 0.1352 (256/1893) 1 Intact * Os_TE_32054 Chr9 13038691 13038692 + STOWAWAY50_OS 174 0.0003 (1/2899) 0 * * Os_TE_32048 Chr9 13036043 13036042 - STOWAWAY41_OS 264 0.0026 (7/2681) 0 * * Os_TE_32037 Chr9 13033405 13033406 + RIREX_LTR 8828 0.0003 (1/2992) 0 * Os_TE_32036 Os_TE_32036 Chr9 13033401 13033400 - RIREX_LTR 8828 0.0003 (1/2991) 0 * Os_TE_32037 Os_TE_32032 Chr9 13031010 13023637 - RIREX_LTR 8828 0.0534 (160/2994) 1 Intact Os_TE_32028 Os_TE_32028 Chr9 13023637 13031010 + RIREX_LTR 8828 0.0541 (162/2996) 1 Intact Os_TE_32032 Os_TE_32009 Chr9 13012040 13012041 - SC-8_LTR 4951 0.0013 (4/2995) 0 * Os_TE_32008 Os_TE_32008 Chr9 13012036 13012035 + SC-8_LTR 4951 0.0013 (4/2993) 0 * Os_TE_32009 Os_TE_32006 Chr9 13011864 13011865 + SC-8_LTR 4951 0.0003 (1/2991) 0 * Os_TE_32005 Os_TE_32005 Chr9 13011860 13011859 - SC-8_LTR 4951 0.0003 (1/2990) 0 * Os_TE_32006 Os_TE_31999 Chr9 13009333 13009332 - ORSgTEMT01601208 238 0.0261 (73/2798) 0 * * Os_TE_31971 Chr9 13001455 13001456 - ORSgTEMT01701266 154 0.0020 (6/2986) 0 * * Os_TE_31954 Chr9 12997971 12997972 - DS-RICE2N 613 0.5975 (1789/2994) 0 * Os_TE_31953 Os_TE_31953 Chr9 12997964 12997963 + DS-RICE4N 715 0.5958 (1782/2991) 0 * Os_TE_31954 Os_TE_31947 Chr9 12996564 12996565 + RIREX_LTR 8828 0.0003 (1/2985) 0 * Os_TE_31946 Os_TE_31946 Chr9 12996560 12996559 - RIREX_LTR 8828 0.0003 (1/2990) 0 * Os_TE_31947 Os_TE_31930 Chr9 12977486 12977487 - ORSiTERTOOT00074 4935 0.6376 (1867/2928) 0 * Os_TE_31929 Os_TE_31929 Chr9 12977482 12977481 + ORSiTERTOOT00074 4935 0.6389 (1865/2919) 0 * Os_TE_31930 Os_TE_31914 Chr9 12972496 12972495 - UNIQUE 158 0.6257 (1872/2992) 0 * Os_TE_31913 Os_TE_31913 Chr9 12972495 12972496 + ORSiTEMT03300001 145 0.6087 (1783/2929) 0 * Os_TE_31914 Os_TE_31896 Chr9 12963650 12963651 + COPI2_LTR 4733 0.0003 (1/2948) 0 * Os_TE_31895 Os_TE_31895 Chr9 12963646 12963645 - COPI2_LTR 4733 0.0003 (1/2986) 0 * Os_TE_31896 Os_TE_31887 Chr9 12961594 12961595 + STOWAWAY21_OS 243 0.0121 (36/2970) 0 * * Os_TE_31852 Chr9 12943187 12943188 + COPI1_LTR 4721 0.0003 (1/2992) 0 * * Os_TE_31846 Chr9 12940498 12940497 - COPI2_LTR 4733 0.0003 (1/2987) 0 * * Os_TE_31836 Chr9 12936261 12936260 + RETRO2_LTR 12874 0.1341 (401/2990) 0 * * Os_TE_31763 Chr9 12904572 12904571 - RETRO2_LTR 12874 0.0081 (24/2970) 0 * * Os_TE_31750 Chr9 12901839 12901840 - ORSgTERT00201216 11284 0.0074 (22/2986) 0 * Os_TE_31749 Os_TE_31749 Chr9 12901835 12901834 - RIRE2_LTR 11306 0.0074 (22/2990) 0 * Os_TE_31750 Os_TE_31748 Chr9 12901783 12901784 + RETROSAT2LTRA 3112 0.5591 (1674/2994) 0 * Os_TE_31747 Os_TE_31747 Chr9 12901779 12901778 - RETROSAT2LTRA 3112 0.5597 (1677/2996) 0 * Os_TE_31748 Os_TE_31746 Chr9 12900784 12900785 - SZ-55_LTR 10318 0.0003 (1/2941) 0 * Os_TE_31745 Os_TE_31745 Chr9 12900780 12900779 + SZ-55_LTR 10318 0.0003 (1/2945) 0 * Os_TE_31746 Os_TE_31727 Chr9 12886247 12886248 - ENSPM3_OS 10837 0.0003 (1/2989) 0 * * Os_TE_31714 Chr9 12882810 12882456 - ORSgTEMT00100854 331 0.8488 (2499/2944) 1 Intact * Os_TE_31705 Chr9 12881528 12881529 - MPING 430 0.0003 (1/2972) 0 * Os_TE_31704 Os_TE_31704 Chr9 12881526 12881525 + MPING 430 0.0003 (1/2990) 0 * Os_TE_31705 Os_TE_31700 Chr9 12880650 12880413 - TREP215 239 0.8406 (2188/2603) 1 Intact * Os_TE_31685 Chr9 12877944 12877945 - ORSgTEMT00900760 239 0.0446 (119/2666) 0 * Os_TE_31684 Os_TE_31684 Chr9 12877922 12877921 + ORSgTEMT00901844 250 0.0817 (226/2765) 0 * Os_TE_31685 Os_TE_31680 Chr9 12875987 12875988 + ORSgTEMT01400018 210 0.1374 (386/2810) 0 * * Os_TE_31678 Chr9 12875923 12875686 - STOWAWAY51_OS 246 0.8809 (2449/2780) 1 Intact * Os_TE_31672 Chr9 12873836 12873837 - RETROFIT_LTR 4866 0.0090 (27/2989) 0 * * Os_TE_31670 Chr9 12873677 12873678 - RIRE2_LTR 11306 0.5539 (1655/2988) 0 * Os_TE_31669 Os_TE_31669 Chr9 12873673 12873672 - ORSgTERT00201216 11284 0.5552 (1660/2990) 0 * Os_TE_31670 Os_TE_31668 Chr9 12873161 12873162 - AMYLTP 383 0.0013 (4/2980) 0 * * Os_TE_31659 Chr9 12870091 12870092 + MuDR-N6_OS 836 0.1673 (495/2958) 0 * Os_TE_31658 Os_TE_31658 Chr9 12870087 12870086 - OSTE1 801 0.1679 (496/2955) 0 * Os_TE_31659 Os_TE_31618 Chr9 12852405 12852406 + TRUNCATOR 2918 0.0004 (1/2469) 0 * * Os_TE_31608 Chr9 12850816 12850817 - ORSgTETN00200001 10994 0.0061 (17/2780) 0 * * Os_TE_31594 Chr9 12843506 12843718 + ORSgTEMT01601122 212 0.8407 (2454/2919) 1 Intact * Os_TE_31590 Chr9 12838969 12839109 + TNR2A 152 0.8465 (2498/2951) 1 Intact * Os_TE_31576 Chr9 12832551 12832552 + COPI2_LTR 4733 0.0003 (1/2953) 0 * Os_TE_31575 Os_TE_31575 Chr9 12832547 12832546 - COPI2_LTR 4733 0.0003 (1/2956) 0 * Os_TE_31576 Os_TE_31573 Chr9 12831296 12831297 + MPING 430 0.0004 (1/2628) 0 * Os_TE_31572 Os_TE_31572 Chr9 12831294 12831293 - MPING 430 0.0004 (1/2607) 0 * Os_TE_31573 Os_TE_31555 Chr9 12824716 12824717 - ORSgTEMT00100865 348 0.1643 (488/2970) 0 * * Os_TE_31548 Chr9 12823043 12823042 - ORSgTEMT01701481 144 0.0004 (1/2823) 0 * * Os_TE_31538 Chr9 12816699 12816698 - COPIA2-LTR_OS 6433 0.0005 (1/1998) 0 * * Os_TE_31535 Chr9 12816209 12816210 + MERMITEB 1610 0.1536 (451/2937) 0 * Os_TE_31534 Os_TE_31534 Chr9 12816203 12816202 - MERMITE18B 1306 0.1625 (476/2929) 0 * Os_TE_31535 Os_TE_31522 Chr9 12814445 12814632 - ORSgTEMT02500033 191 0.8610 (2540/2950) 1 Intact Os_TE_31521 Os_TE_31521 Chr9 12814375 12814075 - ORSgTEMT00101341 314 0.8656 (2538/2932) 1 Intact Os_TE_31522 Os_TE_31513 Chr9 12813527 12813290 - ORSgTEMT00901387 241 0.8802 (2541/2887) 1 Intact Os_TE_31511 Os_TE_31511 Chr9 12813287 12813505 - ORSgTEMT00900741 219 0.8515 (2528/2969) 1 Intact Os_TE_31513 Os_TE_31510 Chr9 12812867 12812348 - DS-RICE3N 525 0.8420 (2207/2621) -1 Intact * Os_TE_31477 Chr9 12798353 12798354 + MPING 430 0.0060 (18/2997) 0 * Os_TE_31476 Os_TE_31476 Chr9 12798351 12798350 - MPING 430 0.0057 (17/2994) 0 * Os_TE_31477 Os_TE_31475 Chr9 12798245 12798246 + MPING 430 0.0007 (2/2996) 0 * Os_TE_31474 Os_TE_31474 Chr9 12798243 12798242 - MPING 430 0.0007 (2/2997) 0 * Os_TE_31475 Os_TE_31471 Chr9 12796741 12796742 - SZ-9LTR 965 0.0527 (158/2998) 0 * Os_TE_31470 Os_TE_31470 Chr9 12796737 12796736 + SZ-9LTR 965 0.0528 (158/2994) 0 * Os_TE_31471 Os_TE_31469 Chr9 12796651 12796652 + DS-RICE2N 613 0.5409 (1615/2986) 0 * Os_TE_31468 Os_TE_31468 Chr9 12796644 12796643 - DS-RICE2N 613 0.5458 (1634/2994) 0 * Os_TE_31469 Os_TE_31464 Chr9 12795572 12795573 - MPING 430 0.0003 (1/2981) 0 * Os_TE_31463 Os_TE_31463 Chr9 12795570 12795569 + MPING 430 0.0003 (1/2987) 0 * Os_TE_31464 Os_TE_31449 Chr9 12783241 12783240 + ORSgTEMT03600118 431 0.0004 (1/2274) 0 * * Os_TE_31447 Chr9 12781413 12781414 + MPING 430 0.0010 (3/2885) 0 * Os_TE_31446 Os_TE_31446 Chr9 12781411 12781410 - MPING 430 0.0010 (3/2883) 0 * Os_TE_31447 Os_TE_31441 Chr9 12778938 12778939 + MERMITE18E 1528 0.0017 (5/2974) 0 * * Os_TE_31425 Chr9 12774852 12774853 + SEVERIN-2 1952 0.0004 (1/2566) 0 * * Os_TE_31366 Chr9 12752639 12752638 - RIREX_LTR 8828 0.0007 (2/2998) 0 * * Os_TE_31360 Chr9 12751545 12751544 - RIRE3A_LTR 10580 0.0036 (9/2526) 0 * * Os_TE_31350 Chr9 12749843 12749844 - COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_31349 Os_TE_31349 Chr9 12749839 12749838 + COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_31350 Os_TE_31347 Chr9 12749109 12749108 - COPI2_LTR 4733 0.0003 (1/2997) 0 * * Os_TE_31342 Chr9 12743547 12743548 + RIREX_LTR 8828 0.0003 (1/2987) 0 * Os_TE_31341 Os_TE_31341 Chr9 12743543 12743542 - RIREX_LTR 8828 0.0003 (1/2982) 0 * Os_TE_31342 Os_TE_31339 Chr9 12743393 12743392 - RETRO2_LTR 12874 0.0027 (8/2981) 0 * * Os_TE_31332 Chr9 12742102 12742103 - COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_31331 Os_TE_31331 Chr9 12742098 12742097 + COPIA2-LTR_OS 6433 0.0003 (1/2983) 0 * Os_TE_31332 Os_TE_31324 Chr9 12740733 12740732 - TYPEM 227 0.0428 (127/2969) 0 * Os_TE_31323 Os_TE_31323 Chr9 12740732 12740733 - ORSgTEMT02400246 177 0.0417 (124/2971) 0 * Os_TE_31324 Os_TE_31305 Chr9 12728329 12728330 - SZ-54_LTR 5203 0.0003 (1/2969) 0 * * Os_TE_31304 Chr9 12727962 12727808 - STOWAWAY47_OS 148 0.4924 (1457/2959) 1 Intact * Os_TE_31293 Chr9 12724225 12724226 - ORSgTEMT01601987 232 0.0007 (2/2924) 0 * * Os_TE_31266 Chr9 12717692 12717691 + ORSgTETNOOT00908 242 0.0010 (3/2987) 0 * * Os_TE_31265 Chr9 12717438 12717439 + COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_31264 Os_TE_31264 Chr9 12717434 12717433 - COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_31265 Os_TE_31243 Chr9 12714316 12714315 + TRUNCATOR 2918 0.0021 (6/2926) 0 * * Os_TE_31227 Chr9 12709780 12709779 - COPIA2-LTR_OS 6433 0.0003 (1/2978) 0 * * Os_TE_31223 Chr9 12707676 12704315 + SEVERIN-2 1952 0.3225 (897/2781) 1 Intact * Os_TE_31202 Chr9 12699428 12699427 - SZ-40LTR 2465 0.0027 (8/2997) 0 * * Os_TE_31179 Chr9 12693518 12693519 - COPIA2-LTR_OS 6433 0.0013 (2/1525) 0 * * Os_TE_31172 Chr9 12692706 12692707 - ORSiTETN00200006 8216 0.3832 (571/1490) 0 * * Os_TE_31160 Chr9 12687981 12687980 - SZ-35LTR 3853 0.0461 (137/2970) 0 * * Os_TE_31151 Chr9 12685562 12685561 + TWIFB1 3737 0.0007 (2/2871) 0 * * Os_TE_31150 Chr9 12685398 12685399 - RETRO2_LTR 12874 0.0399 (111/2785) 0 * * Os_TE_31138 Chr9 12682408 12682409 - AMYLTP 383 0.0582 (174/2992) 0 * Os_TE_31137 Os_TE_31137 Chr9 12682400 12682399 + AMYLTP 383 0.0559 (167/2987) 0 * Os_TE_31138 Os_TE_31096 Chr9 12662722 12662721 + STOWAWAY51_OS 246 0.0003 (1/2989) 0 * * Os_TE_31031 Chr9 12653607 12653608 - TYPEM 227 0.0003 (1/2889) 0 * Os_TE_31030 Os_TE_31030 Chr9 12653606 12653605 - ORSgTEMT02400179 221 0.0003 (1/2881) 0 * Os_TE_31031 Os_TE_31028 Chr9 12653381 12653382 + ORSgTEMT02000018 177 0.0008 (2/2587) 0 * * Os_TE_30951 Chr9 12621933 12621932 - ORSgTEMT00101242 323 0.7026 (2091/2976) 0 * * Os_TE_30941 Chr9 12620357 12620358 - ORSiTERTOOT00214 738 0.0034 (10/2943) 0 * Os_TE_30939 Os_TE_30939 Chr9 12620347 12620346 + ORSiTERTOOT00074 4935 0.0031 (9/2947) 0 * Os_TE_30941 Os_TE_30903 Chr9 12605612 12605613 - MPING 430 0.0007 (2/2973) 0 * * Os_TE_30889 Chr9 12595321 12595322 - ORSgTETNOOT00591 258 0.0003 (1/2974) 0 * * Os_TE_30885 Chr9 12593571 12593572 + HELITRON2_OS 15167 0.2614 (777/2972) 0 * * Os_TE_30874 Chr9 12587062 12587061 - STOWAWAY10_OS 259 0.0017 (5/2958) 0 * Os_TE_30873 Os_TE_30873 Chr9 12587061 12587062 - ORSgTEMT00101174 225 0.0017 (5/2961) 0 * Os_TE_30874 Os_TE_30833 Chr9 12571150 12571151 + COPI2_LTR 4733 0.0003 (1/2971) 0 * * Os_TE_30801 Chr9 12554312 12554311 - SZ-22_LTR 4403 0.0003 (1/2952) 0 * * Os_TE_30793 Chr9 12552961 12552960 - INDITTO 263 0.1048 (313/2988) 0 * * Os_TE_30792 Chr9 12552767 12552766 - STOWAWAY11_OS 292 0.6821 (2043/2995) 0 * * Os_TE_30745 Chr9 12534751 12534750 - COPI2_LTR 4733 0.0078 (23/2962) 0 * * Os_TE_30719 Chr9 12526130 12526131 - SZ-5LTR 1223 0.3637 (1082/2975) 0 * Os_TE_30718 Os_TE_30718 Chr9 12526126 12526125 + COPIA1-LTR_OS 9292 0.3664 (1091/2978) 0 * Os_TE_30719 Os_TE_30707 Chr9 12521349 12522835 - SETARIA1 1293 0.6168 (1658/2688) 1 Intact * Os_TE_30681 Chr9 12512255 12512254 - RETROSAT3_LTR 11537 0.0030 (5/1689) 0 * * Os_TE_30680 Chr9 12511231 12511232 + RIREX_LTR 8828 0.0207 (34/1639) 0 * Os_TE_30679 Os_TE_30679 Chr9 12511227 12511226 - RIREX_LTR 8828 0.0200 (33/1648) 0 * Os_TE_30680 Os_TE_30628 Chr9 12487537 12487538 - COPIA2-LTR_OS 6433 0.0006 (1/1659) 0 * Os_TE_30627 Os_TE_30627 Chr9 12487533 12487532 + COPIA2-LTR_OS 6433 0.0006 (1/1665) 0 * Os_TE_30628 Os_TE_30590 Chr9 12473940 12461488 - OSTE7 837 0.6683 (1914/2864) 1 Intact * Os_TE_30490 Chr9 12459045 12459044 - CACTA-Q 2268 0.0331 (96/2903) 0 * * Os_TE_30458 Chr9 12450220 12450219 - RETRO1_LTR 8314 0.0017 (5/2899) 0 * * Os_TE_30434 Chr9 12448105 12446035 + MERMITEA 1710 0.6825 (2016/2954) 1 Intact Os_TE_30430 Os_TE_30430 Chr9 12446033 12448103 - MERMITEA 1710 0.6873 (2044/2974) 1 Intact Os_TE_30434 Os_TE_30412 Chr9 12441156 12441157 + SPMLIKE 10989 0.3324 (986/2966) 0 * Os_TE_30411 Os_TE_30411 Chr9 12441154 12441153 - ORSgTETN00200001 10994 0.3125 (906/2899) 0 * Os_TE_30412 Os_TE_30406 Chr9 12435513 12435514 - RETRO2_LTR 12874 0.0027 (8/2991) 0 * Os_TE_30405 Os_TE_30405 Chr9 12435509 12435508 + RETRO2_LTR 12874 0.0020 (6/2944) 0 * Os_TE_30406 Os_TE_30389 Chr9 12427433 12427432 - ORSgTEMT02400179 221 0.0028 (8/2907) 0 * * Os_TE_30370 Chr9 12414256 12414257 - RETRO2_LTR 12874 0.0023 (7/2986) 0 * Os_TE_30369 Os_TE_30369 Chr9 12414252 12414251 + RETRO2A_LTR 12895 0.0027 (8/2987) 0 * Os_TE_30370 Os_TE_30362 Chr9 12413392 12413393 + ORSgTETNOOT00908 242 0.0010 (3/2994) 0 * * Os_TE_30358 Chr9 12412465 12412464 + MUDRN5_OS 374 0.0003 (1/2997) 0 * * Os_TE_30330 Chr9 12400329 12400330 + ORSiTERTOOT00226 792 0.0003 (1/2989) 0 * Os_TE_30329 Os_TE_30329 Chr9 12400325 12400324 + ORSiTERTOOT00226 792 0.0003 (1/2988) 0 * Os_TE_30330 Os_TE_30309 Chr9 12393349 12393350 + AMYLTP 383 0.0013 (4/2982) 0 * Os_TE_30308 Os_TE_30308 Chr9 12393341 12393340 - AMYLTP 383 0.0017 (5/2917) 0 * Os_TE_30309 Os_TE_30305 Chr9 12390866 12390867 + ORSiTEMT01000008 242 0.0007 (2/2950) 0 * * Os_TE_30298 Chr9 12386173 12386174 + ORSiTERTOOT00296 5553 0.0003 (1/2998) 0 * Os_TE_30297 Os_TE_30297 Chr9 12386169 12386168 - SC-3_LTR 5748 0.0003 (1/2999) 0 * Os_TE_30298 Os_TE_30274 Chr9 12373374 12371783 + MERMITEB 1610 0.6688 (2001/2992) 1 Intact * Os_TE_30266 Chr9 12369459 12368367 + OSTE9 421 0.4063 (1045/2572) 1 Intact * Os_TE_30263 Chr9 12365540 12365541 + ORSgTETNOOT00012 241 0.0003 (1/2990) 0 * * Os_TE_30252 Chr9 12359689 12359690 + RIRE2_LTR 11306 0.0030 (9/2985) 0 * Os_TE_30251 Os_TE_30251 Chr9 12359685 12359684 - RIRE2_LTR 11306 0.0023 (7/2981) 0 * Os_TE_30252 Os_TE_30221 Chr9 12348760 12348761 - ORSiTERT00100062 5674 0.0003 (1/2994) 0 * Os_TE_30220 Os_TE_30220 Chr9 12348756 12348755 + OSTONOR1_LTR 6440 0.0003 (1/2989) 0 * Os_TE_30221 Os_TE_30215 Chr9 12347586 12347585 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * * Os_TE_30182 Chr9 12332322 12332323 - SZ-22_LTR 4403 0.0003 (1/2982) 0 * * Os_TE_30151 Chr9 12325438 12325439 + TRUNCATOR 2918 0.0007 (2/2851) 0 * * Os_TE_30140 Chr9 12323216 12323217 + COPI2_LTR 4733 0.0003 (1/2987) 0 * Os_TE_30139 Os_TE_30139 Chr9 12323212 12323211 - COPI2_LTR 4733 0.0003 (1/2990) 0 * Os_TE_30140 Os_TE_30138 Chr9 12323091 12323090 + ORSgTEMT01601591 242 0.0003 (1/2993) 0 * * Os_TE_30113 Chr9 12313526 12313525 + ORSgTEMT01601591 242 0.0007 (2/2858) 0 * * Os_TE_30112 Chr9 12313399 12313400 - ORSgTEMT00600524 364 0.0007 (2/2841) 0 * Os_TE_30111 Os_TE_30111 Chr9 12313397 12313396 + ORSgTEMT00600272 361 0.0007 (2/2855) 0 * Os_TE_30112 Os_TE_30085 Chr9 12303390 12303391 - COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_30084 Os_TE_30084 Chr9 12303386 12303385 + COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_30085 Os_TE_30067 Chr9 12299179 12299178 + RIRE2_LTR 11306 0.0013 (4/2990) 0 * * Os_TE_30030 Chr9 12282461 12281185 + MUDRN1_OS 764 0.4037 (1190/2948) 1 Intact * Os_TE_30029 Chr9 12281163 12281164 + NDNA1TNA_OS 334 0.3347 (995/2973) 0 * * Os_TE_30016 Chr9 12273188 12273187 + STOWAWAY21_OS 243 0.0014 (4/2954) 0 * Os_TE_30015 Os_TE_30015 Chr9 12273187 12273188 + ORSgTEMT01601122 212 0.0010 (3/2952) 0 * Os_TE_30016 Os_TE_30011 Chr9 12272196 12272197 + ORSiTETN00100011 676 0.1184 (354/2989) 0 * Os_TE_30010 Os_TE_30010 Chr9 12272184 12272183 + DS-RICE4N 715 0.1055 (312/2958) 0 * Os_TE_30011 Os_TE_30008 Chr9 12271484 12271485 + ORSgTETNOOT00908 242 0.0003 (1/2994) 0 * Os_TE_30007 Os_TE_30007 Chr9 12271483 12271482 + ORSgTETNOOT00012 241 0.0003 (1/2993) 0 * Os_TE_30008 Os_TE_29977 Chr9 12266720 12266721 + COPI2_LTR 4733 0.0007 (2/2948) 0 * * Os_TE_29964 Chr9 12264833 12265101 - ORSgTEMT06100010 269 0.4772 (1422/2980) 1 Intact * Os_TE_29935 Chr9 12256595 12256594 + ORSgTETN00200005 1121 0.0843 (236/2798) 0 * Os_TE_29934 Os_TE_29934 Chr9 12256594 12256595 + CACTA-H 1152 0.0837 (234/2795) 0 * Os_TE_29935 Os_TE_29925 Chr9 12248580 12248579 - RPO_OS 1983 0.0014 (4/2796) 0 * * Os_TE_29910 Chr9 12244676 12244677 + MDR2 6967 0.0018 (5/2767) 0 * Os_TE_29909 Os_TE_29909 Chr9 12244664 12244663 - MDR2 6967 0.0018 (5/2762) 0 * Os_TE_29910 Os_TE_29892 Chr9 12233132 12233133 - HARB-1_OS 5166 0.0003 (1/2992) 0 * Os_TE_29891 Os_TE_29891 Chr9 12233130 12233129 + HARB-1_OS 5166 0.0003 (1/2989) 0 * Os_TE_29892 Os_TE_29879 Chr9 12228656 12228657 - SZ-40LTR 2465 0.0003 (1/2950) 0 * Os_TE_29878 Os_TE_29878 Chr9 12228652 12228651 + GYPSY-A_LTR 8951 0.0003 (1/2955) 0 * Os_TE_29879 Os_TE_29875 Chr9 12227407 12227408 + MUDRN3_OS 903 0.0007 (2/2965) 0 * Os_TE_29874 Os_TE_29874 Chr9 12227399 12227398 + MUDRN3_OS 903 0.0007 (2/2958) 0 * Os_TE_29875 Os_TE_29861 Chr9 12219575 12219576 - COPIA2-LTR_OS 6433 0.0003 (1/2977) 0 * * Os_TE_29847 Chr9 12214297 12214298 + ORSgTETNOOT01834 251 0.0007 (2/2995) 0 * Os_TE_29846 Os_TE_29846 Chr9 12214295 12214294 + ORSgTETNOOT01998 254 0.0007 (2/2995) 0 * Os_TE_29847 Os_TE_29845 Chr9 12213501 12213502 + RIREX_LTR 8828 0.0003 (1/2997) 0 * Os_TE_29844 Os_TE_29844 Chr9 12213497 12213496 - RIREX_LTR 8828 0.0003 (1/2999) 0 * Os_TE_29845 Os_TE_29812 Chr9 12194459 12194458 - COPIA2-LTR_OS 6433 0.0013 (4/2978) 0 * * Os_TE_29811 Chr9 12194267 12194266 - Mudr5_OS 5952 0.0017 (5/2979) 0 * * Os_TE_29787 Chr9 12186429 12186428 - ORSgTEMT01900024 348 0.0014 (4/2891) 0 * * Os_TE_29785 Chr9 12186367 12186368 + STOWAWAY1_OS 149 0.0019 (5/2673) 0 * Os_TE_29784 Os_TE_29784 Chr9 12186366 12186365 - STOWAWAY1_OS 149 0.0019 (5/2664) 0 * Os_TE_29785 Os_TE_29782 Chr9 12186120 12186119 - COPIA2-LTR_OS 6433 0.0003 (1/2919) 0 * * Os_TE_29779 Chr9 12185607 12185606 - TRUNCATOR 2918 0.0007 (2/2981) 0 * Os_TE_29778 Os_TE_29778 Chr9 12185606 12185607 + TRUNCATOR 2918 0.0007 (2/2987) 0 * Os_TE_29779 Os_TE_29777 Chr9 12183057 12183056 + ORSiTERTOOT00226 792 0.0003 (1/2970) 0 * * Os_TE_29776 Chr9 12181966 12181967 + SZ-67LTR 1540 0.0067 (20/2967) 0 * Os_TE_29775 Os_TE_29775 Chr9 12181962 12181961 - SZ-67LTR 1540 0.0071 (21/2961) 0 * Os_TE_29776 Os_TE_29765 Chr9 12177104 12177105 - ORSgTETN00200001 10994 0.0007 (2/2994) 0 * Os_TE_29764 Os_TE_29764 Chr9 12177102 12177101 + SPMLIKE 10989 0.0007 (2/2994) 0 * Os_TE_29765 Os_TE_29763 Chr9 12176779 12176778 + ORSgTETNOOT00908 242 0.4315 (1286/2980) 0 * * Os_TE_29723 Chr9 12160416 12162609 - SZ-35LTR 3853 0.5740 (1699/2960) 1 Intact * Os_TE_29701 Chr9 12151004 12151005 - INDITTO 263 0.0572 (167/2920) 0 * Os_TE_29700 Os_TE_29700 Chr9 12151002 12151001 - ORSgTETNOOT00053 263 0.0562 (167/2973) 0 * Os_TE_29701 Os_TE_29684 Chr9 12148084 12148083 - RETRO2_LTR 12874 0.0020 (6/2976) 0 * * Os_TE_29656 Chr9 12138858 12138859 + SPMLIKE 10989 0.0155 (46/2963) 0 * Os_TE_29655 Os_TE_29655 Chr9 12138856 12138855 - ORSgTETN00200001 10994 0.0162 (48/2965) 0 * Os_TE_29656 Os_TE_29650 Chr9 12137687 12132766 - ORSiTERT00100079 4922 0.5939 (1673/2817) 1 Intact * Os_TE_29633 Chr9 12131006 12131005 + STOWAWAY20_OS 278 0.0017 (5/2942) 0 * * Os_TE_29625 Chr9 12129683 12129682 - ENSPM4_OS 11610 0.0580 (172/2965) 0 * * Os_TE_29615 Chr9 12128248 12128249 + STOWAWAY51_OS 246 0.0003 (1/2987) 0 * * Os_TE_29614 Chr9 12126627 12126628 + SPMLIKE 10989 0.0003 (1/2987) 0 * Os_TE_29613 Os_TE_29613 Chr9 12126625 12126624 - ORSgTETN00200001 10994 0.0003 (1/2991) 0 * Os_TE_29614 Os_TE_29602 Chr9 12122261 12122026 - ORSgTEMT01600750 238 0.6512 (1923/2953) 1 Intact Os_TE_29601 Os_TE_29601 Chr9 12122026 12122261 - ORSgTEMT01600750 238 0.6419 (1830/2851) 1 Intact Os_TE_29602 Os_TE_29599 Chr9 12121794 12121907 - SINE16_OS 116 0.6648 (1888/2840) 1 Intact * Os_TE_29597 Chr9 12120669 12120670 + COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_29596 Os_TE_29596 Chr9 12120665 12120664 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_29597 Os_TE_29594 Chr9 12120070 12118217 + MERMITE18B 1306 0.5799 (1738/2997) 1 Intact Os_TE_29590 Os_TE_29590 Chr9 12118212 12120072 + MERMITEB 1610 0.5695 (1676/2943) 1 Intact Os_TE_29594 Os_TE_29584 Chr9 12116604 12115585 - CACTA-H 1152 0.8371 (1490/1780) -1 Intact * Os_TE_29579 Chr9 12113451 12113450 - ORSgTEMT01700299 212 0.0176 (37/2105) 0 * * Os_TE_29578 Chr9 12113448 12113449 + ORSgTEMT01700789 143 0.0138 (35/2543) 0 * Os_TE_29577 Os_TE_29577 Chr9 12113444 12113443 + ORSgTEMT01701861 113 0.0171 (36/2104) 0 * Os_TE_29578 Os_TE_29576 Chr9 12113290 12113291 + ORSgTEMT00100291 345 0.1434 (299/2085) 0 * * Os_TE_29566 Chr9 12112542 12112541 - SETARIA1 1293 0.0010 (2/2040) 0 * * Os_TE_29565 Chr9 12112483 12112484 + ORSgTETNOOT01998 254 0.0087 (18/2068) 0 * * Os_TE_29554 Chr9 12110236 12110235 + ENSPM4_OS 11610 0.0024 (5/2117) 0 * * Os_TE_29552 Chr9 12108435 12108436 + RETROSAT4_LTR 13504 0.0040 (12/2971) 0 * Os_TE_29551 Os_TE_29551 Chr9 12108431 12108430 - RETROSAT4_LTR 13504 0.0047 (14/2973) 0 * Os_TE_29552 Os_TE_29550 Chr9 12107571 12107572 - RIRE2_LTR 11306 0.0048 (14/2943) 0 * Os_TE_29549 Os_TE_29549 Chr9 12107567 12107566 - ORSgTERT00201216 11284 0.0047 (14/2948) 0 * Os_TE_29550 Os_TE_29548 Chr9 12107483 12107484 + NDNA1TNA_OS 334 0.0047 (14/2955) 0 * Os_TE_29547 Os_TE_29547 Chr9 12107481 12107480 - NDNA1TNA_OS 334 0.0047 (14/2952) 0 * Os_TE_29548 Os_TE_29531 Chr9 12105757 12105756 - ORSgTEMT00901269 237 0.0138 (36/2609) 0 * * Os_TE_29529 Chr9 12105739 12105477 + INDITTO 263 0.5893 (1656/2810) 1 Intact Os_TE_29528 Os_TE_29528 Chr9 12105477 12105739 - INDITTO 263 0.6256 (1694/2708) 1 Intact Os_TE_29529 Os_TE_29517 Chr9 12101280 12101281 - OSTE33 1012 0.0048 (13/2705) 0 * * Os_TE_29485 Chr9 12095020 12095019 + ORSiTERTOOT00226 792 0.0003 (1/2933) 0 * * Os_TE_29484 Chr9 12094567 12094568 + RIRE5-LTR_OS 6427 0.0024 (7/2943) 0 * Os_TE_29483 Os_TE_29483 Chr9 12094560 12094559 - RIRE5-LTR_OS 6427 0.0051 (15/2949) 0 * Os_TE_29484 Os_TE_29480 Chr9 12092409 12093225 - OSTE27 969 0.4349 (721/1658) 1 Intact * Os_TE_29474 Chr9 12090839 12090840 - ORSgTEMT01600374 210 0.4426 (1288/2910) 0 * * Os_TE_29473 Chr9 12089812 12089813 - ORSiTERTOOT00366 5449 0.0027 (8/2961) 0 * Os_TE_29472 Os_TE_29472 Chr9 12089808 12089807 + ORSiTERTOOT00366 5449 0.0024 (7/2961) 0 * Os_TE_29473 Os_TE_29470 Chr9 12088732 12088585 - ORSgTEMT00502224 149 0.5438 (1539/2830) 1 Intact * Os_TE_29463 Chr9 12088090 12088299 - ORSgTEMT01400022 212 0.5867 (1641/2797) 1 Intact * Os_TE_29451 Chr9 12086255 12086254 - ORSgTEMT00500110 151 0.4548 (1357/2984) 0 * * Os_TE_29450 Chr9 12086253 12086254 - ORSgTEMT00500279 146 0.0145 (43/2972) 0 * * Os_TE_29449 Chr9 12085634 12085633 - SZ-COM 1308 0.0003 (1/2865) 0 * * Os_TE_29446 Chr9 12084192 12084438 + STOWAWAY51_OS 246 0.5683 (1672/2942) 1 Intact * Os_TE_29440 Chr9 12081471 12081472 + COPIA2-LTR_OS 6433 0.0005 (1/1841) 0 * * Os_TE_29438 Chr9 12081224 12081080 - ORSgTEMT00500454 145 0.6066 (1738/2865) 1 Intact Os_TE_29436 Os_TE_29436 Chr9 12081078 12081189 - ORSgTEMT00501219 127 0.5849 (1730/2958) 1 Intact Os_TE_29438 Os_TE_29435 Chr9 12080220 12080219 + ORSgTEMT01600691 229 0.0017 (5/2909) 0 * * Os_TE_29430 Chr9 12078737 12078738 - INDITTO 263 0.0004 (1/2826) 0 * Os_TE_29429 Os_TE_29429 Chr9 12078735 12078734 + INDITTO 263 0.0003 (1/2986) 0 * Os_TE_29430 Os_TE_29428 Chr9 12078419 12078418 - ORSgTEMT01400014 209 0.0003 (1/2976) 0 * Os_TE_29427 Os_TE_29427 Chr9 12078415 12078416 - ORSgTEMT01400022 212 0.0003 (1/2876) 0 * Os_TE_29428 Os_TE_29417 Chr9 12076843 12076842 - ORSgTEMT01400029 213 0.0004 (1/2382) 0 * * Os_TE_29409 Chr9 12072687 12072688 + ORSgTETNOOT00908 242 0.0115 (34/2967) 0 * * Os_TE_29373 Chr9 12064289 12064290 + MPING 430 0.0006 (1/1736) 0 * Os_TE_29372 Os_TE_29372 Chr9 12064287 12064286 - MPING 430 0.0005 (1/1938) 0 * Os_TE_29373 Os_TE_29371 Chr9 12064237 12064238 + OSTE15 1168 0.0036 (6/1658) 0 * * Os_TE_29340 Chr9 12052456 12052457 - ENSPM5_OS 9581 0.0004 (1/2573) 0 * Os_TE_29339 Os_TE_29339 Chr9 12052454 12052453 + ENSPM6_OS 9815 0.0006 (1/1759) 0 * Os_TE_29340 Os_TE_29334 Chr9 12050770 12050771 + MPING 430 0.0006 (1/1755) 0 * Os_TE_29333 Os_TE_29333 Chr9 12050768 12050767 - MPING 430 0.0014 (1/736) 0 * Os_TE_29334 Os_TE_29325 Chr9 12047980 12047981 - ORSgTEMT01400011 212 0.0016 (1/644) 0 * * Os_TE_29314 Chr9 12038540 12038541 - SZ-25LTR 330 0.0018 (3/1683) 0 * Os_TE_29313 Os_TE_29313 Chr9 12038536 12038535 + COPI1_LTR 4721 0.0018 (3/1680) 0 * Os_TE_29314 Os_TE_29293 Chr9 12033881 12033882 + AMYLTP 383 0.0003 (1/2998) 0 * * Os_TE_29291 Chr9 12033214 12033067 + ORSgTEMT01700715 134 0.5622 (1672/2974) 1 Intact Os_TE_29288 Os_TE_29288 Chr9 12033061 12033209 + STOWAWAY50_OS 174 0.5602 (1665/2972) 1 Intact Os_TE_29291 Os_TE_29287 Chr9 12032824 12032825 - MPING 430 0.0011 (2/1785) 0 * Os_TE_29286 Os_TE_29286 Chr9 12032822 12032821 - MPING 430 0.0007 (2/2990) 0 * Os_TE_29287 Os_TE_29285 Chr9 12032736 12032737 + MPING 430 0.0003 (1/2991) 0 * Os_TE_29284 Os_TE_29284 Chr9 12032734 12032733 - MPING 430 0.0006 (1/1684) 0 * Os_TE_29285 Os_TE_29282 Chr9 12032399 12032059 + ORSgTEMT00600124 361 0.5892 (1763/2992) 1 Intact * Os_TE_29271 Chr9 12030244 12030245 - COPI2_LTR 4733 0.0003 (1/2996) 0 * * Os_TE_29269 Chr9 12029069 12020573 + ENSPM3_OS 10837 0.7299 (2146/2940) 1 Intact Os_TE_29258 Os_TE_29258 Chr9 12020573 12029065 - ENSPM3_OS 10837 0.7290 (2141/2937) 1 Intact Os_TE_29269 Os_TE_29245 Chr9 12016115 12015855 - ORSgTEMT00901723 248 0.7609 (2104/2765) 1 Intact * Os_TE_29237 Chr9 12014739 12014740 - EnSpm-13_OS 11171 0.0003 (1/2963) 0 * Os_TE_29236 Os_TE_29236 Chr9 12014737 12014736 + EnSpm-13_OS 11171 0.0003 (1/2945) 0 * Os_TE_29237 Os_TE_29221 Chr9 12011296 12011297 + COPIA2-LTR_OS 6433 0.0003 (1/2930) 0 * Os_TE_29220 Os_TE_29220 Chr9 12011292 12011291 - COPIA2-LTR_OS 6433 0.0005 (1/2152) 0 * Os_TE_29221 Os_TE_29206 Chr9 12006094 12006470 + TYPEU2 382 0.8602 (1471/1710) 1 Intact * Os_TE_29205 Chr9 12004427 12004428 - RETRO2A_LTR 12895 0.0023 (4/1711) 0 * * Os_TE_29199 Chr9 12001642 12001796 + ORSgTEMT01702111 154 0.6316 (1449/2294) 1 Intact * Os_TE_29198 Chr9 12001468 12001469 - STOWAWAY34_OS 256 0.1065 (240/2254) 0 * * Os_TE_29189 Chr9 11996478 11996783 - ORSgTEMT00101670 352 0.7225 (2140/2962) 1 Intact * Os_TE_29178 Chr9 11994949 11994950 + MPING 430 0.0005 (1/1918) 0 * Os_TE_29177 Os_TE_29177 Chr9 11994947 11994946 - MPING 430 0.0006 (1/1707) 0 * Os_TE_29178 Os_TE_29157 Chr9 11982341 11982342 - TRUNCATOR2_LTR 2904 0.0368 (107/2908) 0 * * Os_TE_29152 Chr9 11981675 11981450 - ORSgTEMT01700029 143 0.7387 (2126/2878) 1 Intact * Os_TE_29149 Chr9 11981336 11981337 - ORSgTEMT01602413 239 0.2813 (828/2944) 0 * * Os_TE_29124 Chr9 11971742 11966179 + RIREX_LTR 8828 0.4497 (1331/2960) 1 Intact Os_TE_29121 Os_TE_29121 Chr9 11966179 11971742 - RIREX_LTR 8828 0.5527 (1333/2412) 1 Intact Os_TE_29124 Os_TE_29118 Chr9 11965311 11965312 + MPING 430 0.0007 (2/2925) 0 * Os_TE_29117 Os_TE_29117 Chr9 11965309 11965308 - MPING 430 0.0007 (2/2942) 0 * Os_TE_29118 Os_TE_29095 Chr9 11954266 11954267 - RIRE2_LTR 11306 0.0017 (5/2992) 0 * Os_TE_29094 Os_TE_29094 Chr9 11954262 11954261 + RIRE2_LTR 11306 0.0023 (7/2991) 0 * Os_TE_29095 Os_TE_29093 Chr9 11954164 11954165 - ORSgTERT00201216 11284 0.0334 (100/2993) 0 * Os_TE_29092 Os_TE_29092 Chr9 11954160 11954159 - RIRE2_LTR 11306 0.0341 (102/2993) 0 * Os_TE_29093 Os_TE_29076 Chr9 11945172 11945171 + OSTE33 1012 0.0064 (19/2978) 0 * * Os_TE_29049 Chr9 11930315 11929978 - ORSgTEMT00100799 337 0.4896 (1464/2990) 1 Intact Os_TE_29048 Os_TE_29048 Chr9 11929979 11930312 + NDNA1TNA_OS 334 0.4913 (1471/2994) 1 Intact Os_TE_29049 Os_TE_29044 Chr9 11929874 11929875 + ORSiTERTOOT00296 5553 0.0003 (1/2998) 0 * Os_TE_29043 Os_TE_29043 Chr9 11929870 11929869 - SC-3_LTR 5748 0.0003 (1/2998) 0 * Os_TE_29044 Os_TE_29027 Chr9 11920566 11920567 + SC-8_LTR 4951 0.0003 (1/2975) 0 * Os_TE_29026 Os_TE_29026 Chr9 11920562 11920561 - SC-8_LTR 4951 0.0003 (1/2976) 0 * Os_TE_29027 Os_TE_29024 Chr9 11918511 11918512 + SC-3_LTR 5748 0.0017 (5/2982) 0 * Os_TE_29023 Os_TE_29023 Chr9 11918507 11918506 - SC-3_LTR 5748 0.0013 (4/2985) 0 * Os_TE_29024 Os_TE_29001 Chr9 11904382 11904383 - F569 228 0.0003 (1/2978) 0 * Os_TE_29000 Os_TE_29000 Chr9 11904380 11904379 + F569 228 0.0003 (1/2979) 0 * Os_TE_29001 Os_TE_28990 Chr9 11898915 11898914 + OsSN3 183 0.0003 (1/2974) 0 * * Os_TE_28988 Chr9 11895978 11895979 - NDNA1TNA_OS 334 0.0044 (12/2742) 0 * * Os_TE_28965 Chr9 11881776 11881777 + ORSiTERTOOT00296 5553 0.0003 (1/2997) 0 * Os_TE_28964 Os_TE_28964 Chr9 11881772 11881771 - SC-3_LTR 5748 0.0003 (1/2997) 0 * Os_TE_28965 Os_TE_28962 Chr9 11880437 11880438 + MERMITEB 1610 0.0003 (1/2897) 0 * * Os_TE_28948 Chr9 11877714 11877715 - AMYLTP 383 0.0010 (3/2913) 0 * Os_TE_28947 Os_TE_28947 Chr9 11877706 11877705 + AMYLTP 383 0.0011 (3/2856) 0 * Os_TE_28948 Os_TE_28937 Chr9 11876586 11876587 - COPIA2-LTR_OS 6433 0.0315 (92/2925) 0 * * Os_TE_28910 Chr9 11868465 11868466 - MDR2 6967 0.0017 (5/2884) 0 * Os_TE_28909 Os_TE_28909 Chr9 11868457 11868456 + MDR2 6967 0.0017 (5/2905) 0 * Os_TE_28910 Os_TE_28904 Chr9 11867199 11867200 + RETROSAT4_LTR 13504 0.1107 (322/2909) 0 * Os_TE_28903 Os_TE_28903 Chr9 11867195 11867194 - RETROSAT4_LTR 13504 0.1148 (336/2926) 0 * Os_TE_28904 Os_TE_28895 Chr9 11862866 11858142 + ORSiTERTOOT00333 4719 0.4316 (1285/2977) 1 Intact Os_TE_28893 Os_TE_28893 Chr9 11858141 11862866 - ORSiTERTOOT00333 4719 0.4293 (1275/2970) 1 Intact Os_TE_28895 Os_TE_28892 Chr9 11857524 11857525 - SC-3_LTR 5748 0.0003 (1/2985) 0 * Os_TE_28891 Os_TE_28891 Chr9 11857520 11857519 + ORSiTERTOOT00296 5553 0.0003 (1/2989) 0 * Os_TE_28892 Os_TE_28844 Chr9 11838925 11838926 - RIREX_LTR 8828 0.0004 (1/2721) 0 * * Os_TE_28779 Chr9 11811397 11811280 + SINE6_OS 119 0.4579 (1225/2675) 1 Intact * Os_TE_28778 Chr9 11809894 11809893 + ORSgTEMT00900614 244 0.5813 (1723/2964) 0 * * Os_TE_28772 Chr9 11804418 11804419 - DS-RICE2N 613 0.0010 (3/2927) 0 * Os_TE_28771 Os_TE_28771 Chr9 11804411 11804410 + DS-RICE4N 715 0.0011 (3/2815) 0 * Os_TE_28772 Os_TE_28751 Chr9 11800656 11800655 - TEOS1 476 0.5779 (1691/2926) 0 * * Os_TE_28737 Chr9 11792097 11792098 + ORSiTERTOOT00381 4988 0.0050 (15/2978) 0 * Os_TE_28736 Os_TE_28736 Chr9 11792093 11792092 - SC-8_LTR 4951 0.0103 (14/1354) 0 * Os_TE_28737 Os_TE_28735 Chr9 11791813 11791599 - TESS 244 0.4454 (1329/2984) 1 Intact * Os_TE_28725 Chr9 11781233 11781232 + ORSgTEMT01701591 154 0.5731 (1713/2989) 0 * Os_TE_28724 Os_TE_28724 Chr9 11781230 11781231 - ORSgTEMT01700794 153 0.5754 (1721/2991) 0 * Os_TE_28725 Os_TE_28723 Chr9 11779603 11779604 + HATOS1 3488 0.0067 (9/1340) 0 * Os_TE_28722 Os_TE_28722 Chr9 11779596 11779595 - HATOS1 3488 0.0030 (9/2956) 0 * Os_TE_28723 Os_TE_28711 Chr9 11776945 11777168 - ORSgTEMT02000063 217 0.4655 (1331/2859) 1 Intact * Os_TE_28709 Chr9 11776129 11776128 + RETRO2_LTR 12874 0.0011 (3/2849) 0 * * Os_TE_28705 Chr9 11772944 11772945 - RETRO2_LTR 12874 0.0067 (20/2991) 0 * Os_TE_28704 Os_TE_28704 Chr9 11772940 11772939 + RETRO2_LTR 12874 0.0067 (20/2995) 0 * Os_TE_28705 Os_TE_28699 Chr9 11770303 11770304 - ORSiTERT00200154 9386 0.0007 (2/2984) 0 * * Os_TE_28696 Chr9 11769832 11769833 + ORSgTEMT00500526 152 0.0226 (67/2970) 0 * Os_TE_28695 Os_TE_28695 Chr9 11769831 11769830 + ORSgTEMT00500498 155 0.0222 (66/2967) 0 * Os_TE_28696 Os_TE_28690 Chr9 11769364 11769365 - ORSgTEMT00501334 156 0.0228 (68/2986) 0 * * Os_TE_28666 Chr9 11763685 11763684 - ORSgTEMT01602413 239 0.0007 (2/2949) 0 * Os_TE_28665 Os_TE_28665 Chr9 11763682 11763683 - ORSgTEMT01602413 239 0.0010 (3/2943) 0 * Os_TE_28666 Os_TE_28609 Chr9 11746149 11746528 + ORSgTEMT00300122 416 0.7044 (2047/2906) 1 Intact * Os_TE_28592 Chr9 11742629 11742628 - NDNA1TNA_OS 334 0.0166 (46/2771) 0 * * Os_TE_28591 Chr9 11742622 11742391 + ORSgTETNOOT01219 231 0.5000 (1384/2768) 1 Intact Os_TE_28590 Os_TE_28590 Chr9 11742387 11742622 + ORSgTETNOOT00908 242 0.4920 (1445/2937) 1 Intact Os_TE_28591 Os_TE_28589 Chr9 11741872 11741726 + TNR2A 152 0.5070 (1451/2862) 1 Intact Os_TE_28588 Os_TE_28588 Chr9 11741726 11741870 - TNR2A 152 0.4902 (1456/2970) 1 Intact Os_TE_28589 Os_TE_28579 Chr9 11735280 11735279 - SZ-36LTR 5825 0.0012 (1/858) 0 * * Os_TE_28578 Chr9 11735198 11735199 - MuDR2_OS 6770 0.1071 (89/831) -1 * Os_TE_28577 Os_TE_28577 Chr9 11735189 11735188 + MuDR2_OS 6770 0.0324 (24/740) -1 * Os_TE_28578 Os_TE_28555 Chr9 11727546 11727547 - TRUNCATOR 2918 0.1886 (382/2025) 0 * * Os_TE_28534 Chr9 11712664 11712665 - RIRE3_LTR 12054 0.1217 (364/2991) 0 * Os_TE_28533 Os_TE_28533 Chr9 11712660 11712659 + RIRE3_LTR 12054 0.1149 (294/2558) 0 * Os_TE_28534 Os_TE_28525 Chr9 11702206 11701848 - BUHUI 375 0.8905 (2659/2986) 1 Intact Os_TE_28523 Os_TE_28523 Chr9 11701848 11702206 + BUHUI 375 0.8900 (2661/2990) 1 Intact Os_TE_28525 Os_TE_28519 Chr9 11700212 11700211 - CRATA 4786 0.0012 (3/2482) 0 * * Os_TE_28485 Chr9 11675428 11675429 + RIREX_LTR 8828 0.0027 (8/2954) 0 * Os_TE_28484 Os_TE_28484 Chr9 11675424 11675423 - RIREX_LTR 8828 0.0024 (7/2970) 0 * Os_TE_28485 Os_TE_28479 Chr9 11672897 11672896 - ORSiTERTOOT00036 328 0.1417 (397/2801) 0 * * Os_TE_28478 Chr9 11672723 11672724 - ORSgTETN00200001 10994 0.1379 (368/2669) 0 * * Os_TE_28476 Chr9 11672555 11672556 + STOWAWAY21_OS 243 0.0024 (7/2918) 0 * Os_TE_28475 Os_TE_28475 Chr9 11672554 11672553 + STOWAWAY21_OS 243 0.0034 (9/2633) 0 * Os_TE_28476 Os_TE_28468 Chr9 11671730 11671729 + STOWAWAY13_OS 251 0.0170 (37/2173) 0 * * Os_TE_28465 Chr9 11670815 11670816 + F804 170 0.0015 (4/2632) 0 * Os_TE_28464 Os_TE_28464 Chr9 11670807 11670806 - F804 170 0.0015 (4/2665) 0 * Os_TE_28465 Os_TE_28442 Chr9 11664720 11664721 - SZ-9LTR 965 0.0004 (1/2327) 0 * * Os_TE_28441 Chr9 11664561 11664560 - ORSgTEMT01601208 238 0.0219 (64/2919) 0 * Os_TE_28440 Os_TE_28440 Chr9 11664554 11664555 - ORSgTEMT01600515 235 0.0028 (8/2864) 0 * Os_TE_28441 Os_TE_28438 Chr9 11663855 11663854 - TRUNCATOR 2918 0.0011 (3/2636) 0 * Os_TE_28437 Os_TE_28437 Chr9 11663854 11663855 + TRUNCATOR 2918 0.0011 (3/2624) 0 * Os_TE_28438 Os_TE_28425 Chr9 11660733 11660732 - RETROSAT2LTR 12796 0.0007 (2/2859) 0 * * Os_TE_28371 Chr9 11650576 11650577 - RIRE3A_LTR 10580 0.0010 (3/2911) 0 * Os_TE_28370 Os_TE_28370 Chr9 11650572 11650571 + ORSiTERTOOT00027 10853 0.0011 (3/2792) 0 * Os_TE_28371 Os_TE_28356 Chr9 11642195 11642196 - CACTA-E 1207 0.0215 (62/2886) 0 * * Os_TE_28312 Chr9 11632552 11632553 - RIRE2_LTR 11306 0.1730 (398/2300) 0 * * Os_TE_28309 Chr9 11631434 11631433 + ORSgTEMT00901798 232 0.0066 (15/2279) 0 * * Os_TE_28300 Chr9 11628844 11628845 + SPMLIKE 10989 0.0041 (11/2660) 0 * Os_TE_28299 Os_TE_28299 Chr9 11628842 11628841 - ORSgTETN00200001 10994 0.0045 (12/2666) 0 * Os_TE_28300 Os_TE_28276 Chr9 11623304 11623305 + GYPSY-B_LTR 7068 0.1746 (398/2280) 0 * Os_TE_28275 Os_TE_28275 Chr9 11623300 11623299 - GYPSY1-LTR_OS 8900 0.1695 (384/2265) 0 * Os_TE_28276 Os_TE_28274 Chr9 11623249 11623250 + SPMLIKE 10989 0.0013 (3/2251) 0 * Os_TE_28273 Os_TE_28273 Chr9 11623247 11623246 - ORSgTETN00200001 10994 0.0013 (3/2261) 0 * Os_TE_28274 Os_TE_28272 Chr9 11623134 11622895 - ORSgTEMT01601493 303 0.8330 (1875/2251) 1 Intact Os_TE_28271 Os_TE_28271 Chr9 11622895 11623132 - ORSgTEMT01601493 303 0.8519 (1939/2276) 1 Intact Os_TE_28272 Os_TE_28248 Chr9 11612456 11612457 + SPMLIKE 10989 0.0004 (1/2442) 0 * * Os_TE_28242 Chr9 11608229 11608230 - ORSgTERT00201216 11284 0.0013 (3/2305) 0 * Os_TE_28241 Os_TE_28241 Chr9 11608225 11608224 - RIRE2_LTR 11306 0.0012 (3/2500) 0 * Os_TE_28242 Os_TE_28235 Chr9 11600643 11600644 + SPMLIKE 10989 0.1247 (282/2262) 0 * Os_TE_28234 Os_TE_28234 Chr9 11600641 11600640 - ORSgTETN00200001 10994 0.0842 (183/2174) 0 * Os_TE_28235 Os_TE_28215 Chr9 11596704 11596705 - ORSgTEMT02400179 221 0.0017 (3/1804) 0 * * Os_TE_28194 Chr9 11592872 11592873 - CACTA-I 1124 0.1828 (437/2391) 0 * * Os_TE_28173 Chr9 11585693 11585456 + ORSgTEMT01601934 207 0.7458 (1699/2278) 1 Intact * Os_TE_28151 Chr9 11579123 11579122 + TYPEH 309 0.1631 (389/2385) 0 * * Os_TE_28146 Chr9 11577394 11577395 - HELITRON2_OS 15167 0.3320 (805/2425) 0 * * Os_TE_28135 Chr9 11574483 11574482 + TRUNCATOR 2918 0.0987 (203/2057) 0 * Os_TE_28134 Os_TE_28134 Chr9 11574482 11574483 - TRUNCATOR 2918 0.0924 (195/2110) 0 * Os_TE_28135 Os_TE_28124 Chr9 11567456 11569204 + MERMITE18D 1491 0.8803 (2016/2290) 1 Intact * Os_TE_28097 Chr9 11555748 11542833 - RETRO2_LTR 12874 0.6172 (1324/2145) 1 Intact Os_TE_28087 Os_TE_28087 Chr9 11542833 11555748 + RETRO2_LTR 12874 0.6241 (1318/2112) 1 Intact Os_TE_28097 Os_TE_28079 Chr9 11538001 11538000 + ORSgTEMT00901844 250 0.1278 (192/1502) 0 * Os_TE_28078 Os_TE_28078 Chr9 11537997 11537998 - ORSgTEMT00900099 250 0.1234 (186/1507) 0 * Os_TE_28079 Os_TE_28021 Chr9 11507700 11507701 - TRUNCATOR 2918 0.0101 (20/1989) 0 * * Os_TE_28015 Chr9 11506147 11506148 + COPIA2-LTR_OS 6433 0.0004 (1/2310) 0 * Os_TE_28014 Os_TE_28014 Chr9 11506143 11506142 - COPIA2-LTR_OS 6433 0.0007 (1/1342) 0 * Os_TE_28015 Os_TE_28012 Chr9 11505536 11505537 + ORSgTEMT01601525 239 0.2165 (357/1649) 0 * * Os_TE_28007 Chr9 11504332 11503111 - SZ-5LTR 1223 0.7358 (1312/1783) 1 Intact * Os_TE_27972 Chr9 11482495 11482494 - RPO_OS 1983 0.3444 (645/1873) 0 * * Os_TE_27969 Chr9 11479863 11479864 - CACTA-Q 2268 0.0017 (3/1735) 0 * * Os_TE_27950 Chr9 11474756 11475443 - GYPSY-B_LTR 7068 0.8256 (1430/1732) 1 Solo_LTR * Os_TE_27912 Chr9 11462668 11462669 + STOWAWAY9_OS 235 0.2827 (811/2869) 0.92 * * Os_TE_27910 Chr9 11461795 11461796 + NDNA1TNA_OS 334 0.0841 (234/2782) 0 * Os_TE_27909 Os_TE_27909 Chr9 11461794 11461793 - HARB-1_OS 5166 0.0004 (1/2520) 0 * Os_TE_27910 Os_TE_27908 Chr9 11461769 11461770 + YOUREN 286 0.0281 (82/2923) 0 * * Os_TE_27907 Chr9 11461391 11461392 + ORSgTEMT00500476 150 0.2340 (536/2291) 0 * * Os_TE_27896 Chr9 11459831 11459830 - OSTE24 683 0.0081 (24/2958) 0 * * Os_TE_27892 Chr9 11459111 11459340 - ORSgTEMT01600768 234 0.2335 (688/2947) 1 Intact * Os_TE_27890 Chr9 11458400 11458399 + ORSiTERTOOT00226 792 0.0012 (1/844) 0 * * Os_TE_27880 Chr9 11449052 11449051 + SZ-54B_LTR 5183 0.0242 (72/2975) 0 * * Os_TE_27872 Chr9 11446917 11447145 + ORSgTEMT01602152 236 0.7893 (1776/2250) 1 Intact * Os_TE_27871 Chr9 11445936 11445937 - NDNA1TNA_OS 334 0.0052 (10/1905) 0 * Os_TE_27870 Os_TE_27870 Chr9 11445934 11445933 + NDNA1TNA_OS 334 0.0051 (10/1954) 0 * Os_TE_27871 Os_TE_27869 Chr9 11445315 11445316 - ORSgTEMT02900061 318 0.1784 (410/2298) 0 * * Os_TE_27843 Chr9 11436813 11436814 + RIREX_LTR 8828 0.0027 (8/2984) 0 * Os_TE_27842 Os_TE_27842 Chr9 11436809 11436808 - RIREX_LTR 8828 0.0027 (8/2988) 0 * Os_TE_27843 Os_TE_27834 Chr9 11435372 11435153 + STOWAWAY43_OS 233 0.7146 (969/1356) 1 Intact * Os_TE_27832 Chr9 11435139 11435140 + TREP215 239 0.7000 (1743/2490) 0 * * Os_TE_27823 Chr9 11430703 11430554 + ORSgTEMT00501960 150 0.4429 (1214/2741) 1 Intact Os_TE_27822 Os_TE_27822 Chr9 11430551 11430694 + ORSgTEMT00502228 149 0.4021 (1200/2984) 1 Intact Os_TE_27823 Os_TE_27819 Chr9 11428865 11428866 + CASTAWAY 364 0.2409 (711/2951) 0 * Os_TE_27818 Os_TE_27818 Chr9 11428863 11428862 - ORSgTEMT00600085 364 0.2557 (697/2726) 0 * Os_TE_27819 Os_TE_27803 Chr9 11425513 11425512 + COPIA2-LTR_OS 6433 0.0004 (1/2502) 0 * * Os_TE_27791 Chr9 11424395 11424396 + ORSiTERT00200145 12238 0.0149 (43/2890) 0 * Os_TE_27790 Os_TE_27790 Chr9 11424391 11424390 - RETROSAT5_LTR 13878 0.0136 (39/2858) 0 * Os_TE_27791 Os_TE_27786 Chr9 11421912 11421911 + OsSN3 183 0.0929 (271/2916) 0 * * Os_TE_27772 Chr9 11412683 11412684 - RETRO1_LTR 8314 0.0233 (23/987) 0 * Os_TE_27771 Os_TE_27771 Chr9 11412679 11412678 + RETRO1_LTR 8314 0.0217 (23/1059) 0 * Os_TE_27772 Os_TE_27746 Chr9 11400995 11400996 + RPO_OS 1983 0.0010 (1/954) 0 * * Os_TE_27735 Chr9 11397967 11397966 + GYPSY1-LTR_OS 8900 0.0021 (2/969) 0 * * Os_TE_27733 Chr9 11397926 11397927 - GYPSY1-LTR_OS 8900 0.0010 (1/969) 0 * * Os_TE_27713 Chr9 11388860 11388859 - ORSgTEMT01602413 239 0.0010 (1/961) 0 * * Os_TE_27688 Chr9 11378036 11378037 + ORSiTEMT00300001 383 0.1998 (190/951) 0 * Os_TE_27687 Os_TE_27687 Chr9 11378031 11378030 + ORSgTEMT00300063 413 0.1915 (180/940) 0 * Os_TE_27688 Os_TE_27670 Chr9 11369546 11369547 - RIRE2_LTR 11306 0.0334 (27/809) 0 * Os_TE_27669 Os_TE_27669 Chr9 11369542 11369541 - ORSgTERT00201216 11284 0.0176 (26/1474) 0 * Os_TE_27670 Os_TE_27668 Chr9 11369536 11369537 + OLO24 345 0.4915 (782/1591) 0 * * Os_TE_27662 Chr9 11366011 11365729 - YOUREN 286 0.5235 (837/1599) 1 Intact * Os_TE_27658 Chr9 11365446 11365447 - COPIA2-LTR_OS 6433 0.0006 (1/1572) 0 * Os_TE_27657 Os_TE_27657 Chr9 11365442 11365441 + COPIA2-LTR_OS 6433 0.0012 (1/810) 0 * Os_TE_27658 Os_TE_27656 Chr9 11365303 11364413 + STOWAWAY41_OS 264 0.5241 (804/1534) 1 Intact * Os_TE_27652 Chr9 11363504 11363505 + RETROSAT4_LTR 13504 0.0006 (1/1602) 0 * * Os_TE_27649 Chr9 11359889 11359711 + F118 179 0.3062 (813/2655) 1 Intact Os_TE_27648 Os_TE_27648 Chr9 11359711 11359889 - F118 179 0.3896 (812/2084) 1 Intact Os_TE_27649 Os_TE_27647 Chr9 11359495 11359494 + TYPEH 309 0.0004 (1/2758) 0 * * Os_TE_27646 Chr9 11359436 11359437 - ORSgTETN00200001 10994 0.0007 (2/2905) 0 * * Os_TE_27621 Chr9 11349542 11349543 + RPO_OS 1983 0.4314 (607/1407) 0 * * Os_TE_27618 Chr9 11348248 11348247 - ORSgTEMT01601432 239 0.4446 (638/1435) 0 * Os_TE_27617 Os_TE_27617 Chr9 11348245 11348246 + ORSgTEMT01601445 230 0.2460 (259/1053) 0 * Os_TE_27618 Os_TE_27615 Chr9 11347075 11348214 - CACTA-I 1124 0.5496 (775/1410) 1 Intact * Os_TE_27603 Chr9 11345408 11332211 + SPMLIKE 10989 0.5159 (697/1351) 1 Intact Os_TE_27589 Os_TE_27589 Chr9 11332211 11345409 - ORSgTETN00200001 10994 0.2583 (753/2915) 1 Intact Os_TE_27603 Os_TE_27587 Chr9 11332009 11332008 + ORSgTEMT00501601 153 0.6859 (655/955) -1 * * Os_TE_27582 Chr9 11330502 11324147 - SZ-40LTR 2465 0.2697 (801/2970) 1 Intact Os_TE_27573 Os_TE_27573 Chr9 11324147 11330502 + GYPSY-A_LTR 8951 0.2684 (791/2947) 1 Intact Os_TE_27582 Os_TE_27570 Chr9 11323798 11323799 + STOWAWAY36_OS 268 0.7380 (2180/2954) 0 * * Os_TE_27565 Chr9 11320617 11320618 - COPIA2-LTR_OS 6433 0.0057 (17/2990) 0 * Os_TE_27564 Os_TE_27564 Chr9 11320613 11320612 + COPIA2-LTR_OS 6433 0.0054 (16/2982) 0 * Os_TE_27565 Os_TE_27543 Chr9 11316882 11316883 + RETROSAT4_LTR 13504 0.0007 (2/2949) 0 * Os_TE_27542 Os_TE_27542 Chr9 11316878 11316877 - RETROSAT4_LTR 13504 0.0007 (2/2955) 0 * Os_TE_27543 Os_TE_27540 Chr9 11315453 11315452 + SEVERIN-2 1952 0.0010 (3/2975) 0 * * Os_TE_27531 Chr9 11311092 11311091 - SZ-48LTR 3632 0.0636 (188/2958) 0 * * Os_TE_27529 Chr9 11307371 11302206 + HARB-1_OS 5166 0.0755 (225/2981) 1 Intact * Os_TE_27515 Chr9 11300658 11300659 + CACTA-B 1103 0.6111 (1799/2944) 0 * * Os_TE_27484 Chr9 11291607 11291606 + SPMLIKE 10989 0.0023 (7/2988) 0 * * Os_TE_27482 Chr9 11290896 11290895 - STOWAWAY1_OS 149 0.0013 (4/2985) 0 * * Os_TE_27480 Chr9 11290804 11290805 - SZ-55_LTR 10318 0.0003 (1/2996) 0 * * Os_TE_27477 Chr9 11290299 11290300 + RIREX_LTR 8828 0.0010 (3/2960) 0 * Os_TE_27476 Os_TE_27476 Chr9 11290295 11290294 - RIREX_LTR 8828 0.0010 (3/2969) 0 * Os_TE_27477 Os_TE_27474 Chr9 11289549 11289548 + RETRO1_LTR 8314 0.2606 (762/2924) 0 * * Os_TE_27455 Chr9 11285769 11285768 + NDNA1TNA_OS 334 0.0074 (22/2990) 0 * * Os_TE_27453 Chr9 11274429 11285507 - ORSgTETN00200001 10994 0.2167 (641/2958) 1 Intact * Os_TE_27452 Chr9 11273777 11273778 - MUDRN4_OS 332 0.1058 (294/2780) 0 * * Os_TE_27448 Chr9 11271801 11271802 + CACTA-I 1124 0.0064 (17/2649) 0 * Os_TE_27447 Os_TE_27447 Chr9 11271799 11271798 - CACTA-M 1129 0.0063 (19/2993) 0 * Os_TE_27448 Os_TE_27444 Chr9 11271182 11271183 - MuDR4_OS 7610 0.0788 (235/2983) 0 * * Os_TE_27442 Chr9 11270257 11270258 + SPMLIKE 10989 0.0003 (1/2995) 0 * Os_TE_27441 Os_TE_27441 Chr9 11270255 11270254 - ORSgTETN00200001 10994 0.0003 (1/2997) 0 * Os_TE_27442 Os_TE_27440 Chr9 11269834 11269833 + ORSgTEMT01701145 147 0.1092 (327/2994) 0 * * Os_TE_27430 Chr9 11266907 11266906 - RIRE5-LTR_OS 6427 0.0011 (3/2797) 0 * * Os_TE_27395 Chr9 11253216 11252712 + OSTONOR1_LTR 6440 0.7609 (2103/2764) 1 Solo_LTR Os_TE_27392 Os_TE_27392 Chr9 11252711 11253216 - ORSiTERT00100062 5674 0.7598 (2097/2760) 1 Intact Os_TE_27395 Os_TE_27388 Chr9 11251898 11252067 - ORSgTEMT02400246 177 0.7474 (1974/2641) 1 Intact * Os_TE_27382 Chr9 11249484 11249483 + TRUNCATOR 2918 0.0023 (7/2985) 0 * Os_TE_27381 Os_TE_27381 Chr9 11249483 11249484 - TRUNCATOR 2918 0.0023 (7/2985) 0 * Os_TE_27382 Os_TE_27379 Chr9 11249151 11249150 - RETROSAT4_LTR 13504 0.0003 (1/2992) 0 * * Os_TE_27369 Chr9 11243313 11243314 - INDITTO 263 0.0104 (31/2975) 0 * Os_TE_27368 Os_TE_27368 Chr9 11243311 11243310 + INDITTO 263 0.0101 (30/2976) 0 * Os_TE_27369 Os_TE_27362 Chr9 11242755 11242754 + ORSgTEMT01700012 149 0.0175 (52/2973) 0 * Os_TE_27361 Os_TE_27361 Chr9 11242752 11242753 + ORSgTEMT01701224 156 0.0228 (68/2982) 0 * Os_TE_27362 Os_TE_27330 Chr9 11221706 11221707 + SETARIA1 1293 0.2566 (718/2798) 0 * * Os_TE_27312 Chr9 11216308 11214550 - GYPSO_LTR 9828 0.8170 (2143/2623) 1 Intact * Os_TE_27303 Chr9 11209091 11209092 - ORSiTERT00200154 9386 0.1000 (212/2121) 0 * * Os_TE_27269 Chr9 11193107 11193108 - ORSgTETN00200001 10994 0.0009 (2/2122) 0 * * Os_TE_27259 Chr9 11189618 11189619 - ORSgTEMT00600304 361 0.2867 (828/2888) 0 * * Os_TE_27258 Chr9 11188622 11188623 + ID-4 284 0.0017 (4/2371) 0 * * Os_TE_27255 Chr9 11188565 11188564 + COPIA2-LTR_OS 6433 0.0095 (20/2109) 0 * * Os_TE_27251 Chr9 11187591 11187590 + STOWAWAY10_OS 259 0.0003 (1/2931) 0 * * Os_TE_27248 Chr9 11187517 11187518 + SPMLIKE 10989 0.1045 (204/1952) 0 * Os_TE_27247 Os_TE_27247 Chr9 11187515 11187514 - ORSgTETN00200001 10994 0.0670 (178/2655) 0 * Os_TE_27248 Os_TE_27226 Chr9 11182067 11182066 - RETRO1_LTR 8314 0.0084 (24/2846) 0 * * Os_TE_27224 Chr9 11181197 11181043 - ORSgTEMT00501204 149 0.7271 (2118/2913) 1 Intact * Os_TE_27218 Chr9 11179682 11179523 + ORSgTEMT01701388 146 0.8763 (1863/2126) 1 Intact * Os_TE_27132 Chr9 11142055 11142056 + ATLANTYS-LTR_OS 13740 0.0023 (4/1718) 0 * Os_TE_27131 Os_TE_27131 Chr9 11142051 11142050 - SZ-19LTR 1513 0.0017 (4/2340) 0 * Os_TE_27132 Os_TE_27125 Chr9 11140303 11140302 + TRUNCATOR2_LTR 2904 0.0008 (2/2375) 0 * * Os_TE_27119 Chr9 11139048 11139047 - ORSgTETN00200001 10994 0.0004 (1/2759) 0 * * Os_TE_27117 Chr9 11138240 11134652 - ORSiTETNOOT00200 3563 0.2546 (751/2950) 1 Intact Os_TE_27116 Os_TE_27116 Chr9 11134652 11138239 + TWIFBIG 3567 0.2556 (758/2965) 1 Intact Os_TE_27117 Os_TE_27113 Chr9 11134067 11134265 - ORSgTEMT02000041 194 0.2970 (770/2593) 1 Intact * Os_TE_27092 Chr9 11126052 11126053 - COPI2_LTR 4733 0.0003 (1/2865) 0 * * Os_TE_27075 Chr9 11119625 11119626 - RETRO2_LTR 12874 0.0088 (19/2162) 0 * * Os_TE_26995 Chr9 11085563 11101270 - ATLANTYS-LTR_OS 13740 0.7427 (1833/2468) 1 Intact * Os_TE_26992 Chr9 11084611 11084612 - RIREX_LTR 8828 0.0005 (1/1823) 0 * * Os_TE_26967 Chr9 11076272 11082666 - RIRE5-LTR_OS 6427 0.6064 (1806/2978) 1 Intact * Os_TE_26966 Chr9 11076021 11076020 + ORSgTEMT00901844 250 0.0007 (2/2990) 0 * * Os_TE_26949 Chr9 11072770 11072769 - ATLANTYS-LTR_OS 13740 0.3416 (1018/2980) 0 * * Os_TE_26935 Chr9 11069075 11067966 + CACTA-M 1129 0.6979 (730/1046) 1 Intact * Os_TE_26931 Chr9 11067458 11067693 - CACTA-Q 2268 0.3857 (1114/2888) 1 Intact * Os_TE_26928 Chr9 11066479 11066480 + ORSgTEMT01702111 154 0.0017 (2/1167) 0 * * Os_TE_26918 Chr9 11063808 11063809 + SNAP-OL3 189 0.0003 (1/2882) 0 * * Os_TE_26909 Chr9 11060059 11063215 + RETROSAT2LTR 12796 0.4101 (1216/2965) 1 Solo_LTR * Os_TE_26897 Chr9 11047459 11047460 - RIRE2_LTR 11306 0.0684 (89/1301) 0 * Os_TE_26896 Os_TE_26896 Chr9 11047455 11047454 + RIRE2_LTR 11306 0.0720 (95/1320) 0 * Os_TE_26897 Os_TE_26895 Chr9 11047079 11047080 + CACTA-I 1124 0.0091 (12/1318) 0 * * Os_TE_26878 Chr9 11041403 11041402 + SEVERIN-2 1952 0.0016 (2/1268) 0 * * Os_TE_26874 Chr9 11040926 11041111 + ORSgTEMT01701101 133 0.5905 (724/1226) 1 Intact * Os_TE_26852 Chr9 11027108 11027523 - ORSgTEMT01800062 435 0.8404 (2375/2826) 1 Intact * Os_TE_26848 Chr9 11025423 11025422 - STOWAWAY48_OS 261 0.0031 (9/2872) 0 * * Os_TE_26846 Chr9 11024415 11024414 - ORSiOTOT00000037 220 0.0003 (1/2965) 0 * Os_TE_26845 Os_TE_26845 Chr9 11024409 11024410 + ORSiOTOT00000037 220 0.0003 (1/2983) 0 * Os_TE_26846 Os_TE_26843 Chr9 11021101 11021331 + F569 228 0.3578 (829/2317) 1 Intact * Os_TE_26841 Chr9 11020620 11020621 - SZ-9LTR 965 0.0003 (1/2911) 0 * * Os_TE_26837 Chr9 11019692 11019693 + ORSgTEMT01602413 239 0.1668 (454/2722) 0 * * Os_TE_26834 Chr9 11019447 11019446 + ORSgTEMT01601525 239 0.0033 (7/2131) 0 * * Os_TE_26830 Chr9 11019367 11019366 - INDITTO 263 0.1708 (343/2008) 0 * * Os_TE_26818 Chr9 11012492 11012493 + WUWU 113 0.0035 (3/855) 0 * * Os_TE_26803 Chr9 11006723 11006724 - ORSgTEMT01600768 234 0.0035 (3/851) 0 * * Os_TE_26796 Chr9 11004508 11004509 - RIREX_LTR 8828 0.0046 (4/863) 0 * Os_TE_26795 Os_TE_26795 Chr9 11004504 11004503 + RIREX_LTR 8828 0.0030 (3/985) 0 * Os_TE_26796 Os_TE_26794 Chr9 11003301 11003300 + SZ-63_LTR 9602 0.0012 (1/861) 0 * * Os_TE_26792 Chr9 11002176 11002175 + ZM13-1_OS 139 0.0070 (6/854) 0 * * Os_TE_26786 Chr9 11000777 11000776 + STOLAB 312 0.0021 (3/1423) 0 * * Os_TE_26755 Chr9 10981214 10981215 + RIREX_LTR 8828 0.0004 (1/2358) 0 * Os_TE_26754 Os_TE_26754 Chr9 10981210 10981209 - RIREX_LTR 8828 0.0004 (1/2378) 0 * Os_TE_26755 Os_TE_26732 Chr9 10965833 10965834 - COPIA1-LTR_OS 9292 0.0058 (5/863) 0 * Os_TE_26731 Os_TE_26731 Chr9 10965831 10965830 + SZ-5LTR 1223 0.0058 (5/864) 0 * Os_TE_26732 Os_TE_26730 Chr9 10965763 10965764 - RIREX_LTR 8828 0.0592 (51/861) 0 * Os_TE_26729 Os_TE_26729 Chr9 10965759 10965758 + RIREX_LTR 8828 0.0592 (51/861) 0 * Os_TE_26730 Os_TE_26728 Chr9 10964939 10964940 - RIREX_LTR 8828 0.0046 (7/1530) 0 * Os_TE_26727 Os_TE_26727 Chr9 10964935 10964934 + RIREX_LTR 8828 0.0060 (8/1343) 0 * Os_TE_26728 Os_TE_26726 Chr9 10962757 10962756 - CLOUD 734 0.0088 (7/800) 0 * * Os_TE_26721 Chr9 10958927 10958928 + ORSgTEMT04800085 366 0.0035 (3/861) 0 * * Os_TE_26713 Chr9 10951335 10951334 + SZ-47LTR 3144 0.0080 (7/874) 0 * * Os_TE_26703 Chr9 10943466 10943467 + RETROSAT4_LTR 13504 0.0206 (48/2330) 0 * Os_TE_26702 Os_TE_26702 Chr9 10943462 10943461 - RETROSAT4_LTR 13504 0.0223 (52/2334) 0 * Os_TE_26703 Os_TE_26701 Chr9 10943338 10943339 - COPI2_LTR 4733 0.0138 (32/2324) 0 * Os_TE_26700 Os_TE_26700 Chr9 10943334 10943333 + COPI2_LTR 4733 0.0133 (31/2332) 0 * Os_TE_26701 Os_TE_26693 Chr9 10937527 10937528 - ORSiTETNOOT00107 906 0.0017 (4/2331) 0 * * Os_TE_26692 Chr9 10936723 10936724 - CACTA-P 1150 0.0419 (92/2195) 0 * * Os_TE_26690 Chr9 10936603 10936478 + STOWAWAY50_OS 174 0.5727 (1516/2647) 1 Intact Os_TE_26689 Os_TE_26689 Chr9 10936478 10936603 + STOWAWAY50_OS 174 0.6645 (1521/2289) 1 Intact Os_TE_26690 Os_TE_26687 Chr9 10936365 10936366 - HATOS1 3488 0.0022 (5/2311) 0 * * Os_TE_26679 Chr9 10934039 10934038 - TOURIST-XV 239 0.0462 (110/2380) 0 * * Os_TE_26671 Chr9 10931033 10931032 + CASTAWAY 364 0.0003 (1/2998) 0 * * Os_TE_26670 Chr9 10930935 10930936 + STOWAWAY50_OS 174 0.0011 (3/2667) 0 * * Os_TE_26669 Chr9 10930307 10930308 + RIREX_LTR 8828 0.0016 (4/2532) 0 * * Os_TE_26665 Chr9 10929509 10929508 - ORSgTEMT01601208 238 0.3156 (921/2918) 0 * Os_TE_26664 Os_TE_26664 Chr9 10929506 10929507 - ORSgTEMT01600639 228 0.3262 (966/2961) 0 * Os_TE_26665 Os_TE_26658 Chr9 10927232 10927231 + ORSgTEMT01602181 239 0.0017 (5/2994) 0 * Os_TE_26657 Os_TE_26657 Chr9 10927229 10927230 + ORSgTEMT01602181 239 0.0017 (5/2996) 0 * Os_TE_26658 Os_TE_26655 Chr9 10926986 10926987 + INDITTO 263 0.0010 (3/2952) 0 * Os_TE_26654 Os_TE_26654 Chr9 10926984 10926983 - INDITTO 263 0.0010 (3/2985) 0 * Os_TE_26655 Os_TE_26653 Chr9 10924631 10924630 - GYPSO_LTR 9828 0.0003 (1/2967) 0 * * Os_TE_26648 Chr9 10920493 10920494 - RETROSAT2LTRA 3112 0.1114 (333/2988) 0 * * Os_TE_26628 Chr9 10912956 10912957 - ORSiTERT00100079 4922 0.0013 (4/2967) 0 * Os_TE_26627 Os_TE_26627 Chr9 10912952 10912951 + ORSiTERT00100079 4922 0.0014 (4/2960) 0 * Os_TE_26628 Os_TE_26625 Chr9 10911955 10911954 - ORSgTEMT01400006 213 0.7248 (2028/2798) 0 * * Os_TE_26622 Chr9 10911742 10911741 - ORSgTEMT00500773 153 0.7382 (2151/2914) 0 * Os_TE_26621 Os_TE_26621 Chr9 10911715 10911716 + ORSgTEMT00500512 153 0.7456 (2216/2972) 0 * Os_TE_26622 Os_TE_26612 Chr9 10910645 10910644 + STOWAWAY16_OS 228 0.0025 (2/794) 0 * * Os_TE_26605 Chr9 10909834 10910049 - ORSgTEMT00900917 208 0.2153 (599/2782) 1 Intact * Os_TE_26587 Chr9 10900407 10900406 - ORSgTEMT01601432 239 0.5409 (1613/2982) 0 * Os_TE_26586 Os_TE_26586 Chr9 10900404 10900405 + ORSgTEMT01601639 236 0.5299 (1551/2927) 0 * Os_TE_26587 Os_TE_26584 Chr9 10900317 10900316 - ORSgTEMT01602413 239 0.5409 (1568/2899) 0 * * Os_TE_26581 Chr9 10900129 10900130 + ORSgTEMT00500026 147 0.5538 (1637/2956) 0 * * Os_TE_26578 Chr9 10899029 10899028 - SC-4_LTR 5218 0.0007 (2/2700) 0 * * Os_TE_26577 Chr9 10899022 10899023 - RIREX_LTR 8828 0.0011 (3/2699) 0 * * Os_TE_26574 Chr9 10898687 10898688 - RIRE2_LTR 11306 0.0007 (2/2689) 0 * * Os_TE_26572 Chr9 10898069 10898070 + COPIA2-LTR_OS 6433 0.0558 (164/2938) 0 * Os_TE_26571 Os_TE_26571 Chr9 10898065 10898064 - COPIA2-LTR_OS 6433 0.0572 (171/2992) 0 * Os_TE_26572 Os_TE_26563 Chr9 10895829 10895830 + COPIA2-LTR_OS 6433 0.0007 (2/2980) 0 * Os_TE_26562 Os_TE_26562 Chr9 10895825 10895824 - COPIA2-LTR_OS 6433 0.0010 (3/2979) 0 * Os_TE_26563 Os_TE_26532 Chr9 10890038 10890039 - RETROSAT2LTR 12796 0.0017 (5/2998) 0 * * Os_TE_26515 Chr9 10883449 10880454 + TRUNCATOR 2918 0.2612 (747/2860) 1 Intact Os_TE_26510 Os_TE_26510 Chr9 10880452 10883449 - TRUNCATOR 2918 0.2934 (877/2989) 1 Intact Os_TE_26515 Os_TE_26487 Chr9 10870854 10870855 + ORSiTERTOOT00028 8600 0.0305 (89/2919) 0 * Os_TE_26486 Os_TE_26486 Chr9 10870850 10870849 - TRUNCATOR2_LTR 2904 0.0382 (111/2908) 0 * Os_TE_26487 Os_TE_26472 Chr9 10869393 10869392 - RIREX_LTR 8828 0.0003 (1/2924) 0 * * Os_TE_26402 Chr9 10840473 10840474 - SC-8_LTR 4951 0.0003 (1/2986) 0 * Os_TE_26401 Os_TE_26401 Chr9 10840469 10840468 + SC-8_LTR 4951 0.0003 (1/2990) 0 * Os_TE_26402 Os_TE_26400 Chr9 10839603 10839604 + ORSgTETNOOT01275 140 0.0003 (1/2995) 0 * * Os_TE_26390 Chr9 10838011 10838012 - SC-3_LTR 5748 0.0053 (16/2996) 0 * * Os_TE_26359 Chr9 10828054 10828053 - RIREX_LTR 8828 0.0004 (1/2686) 0 * * Os_TE_26340 Chr9 10821295 10821296 + RETROSAT2LTR 12796 0.0008 (2/2652) 0 * Os_TE_26339 Os_TE_26339 Chr9 10821291 10821290 - RETROSAT3_LTR 11537 0.0008 (2/2654) 0 * Os_TE_26340 Os_TE_26314 Chr9 10815150 10815151 - TNR2A 152 0.1019 (273/2680) 0 * * Os_TE_26304 Chr9 10808850 10808851 + RIREX_LTR 8828 0.0071 (21/2963) 0 * Os_TE_26303 Os_TE_26303 Chr9 10808846 10808845 - RIREX_LTR 8828 0.0068 (20/2961) 0 * Os_TE_26304 Os_TE_26302 Chr9 10807772 10807773 - SC-3_LTR 5748 0.0003 (1/2989) 0 * Os_TE_26301 Os_TE_26301 Chr9 10807768 10807767 + ORSiTERTOOT00296 5553 0.0003 (1/2990) 0 * Os_TE_26302 Os_TE_26298 Chr9 10805311 10805312 - MERMITEA 1710 0.1318 (394/2989) 0 * Os_TE_26297 Os_TE_26297 Chr9 10805303 10805302 - MERMITEA 1710 0.1324 (396/2992) 0 * Os_TE_26298 Os_TE_26294 Chr9 10805033 10805034 + NDNA1TNA_OS 334 0.0028 (8/2808) 0 * Os_TE_26293 Os_TE_26293 Chr9 10805031 10805030 - NDNA1TNA_OS 334 0.0027 (8/2943) 0 * Os_TE_26294 Os_TE_26266 Chr9 10794498 10794499 - F524 291 0.2298 (687/2989) 0 * Os_TE_26265 Os_TE_26265 Chr9 10794481 10794480 + F524 291 0.0166 (40/2407) 0 * Os_TE_26266 Os_TE_26264 Chr9 10792908 10792907 + OSR3_LTR 5201 0.0010 (3/2995) 0 * * Os_TE_26263 Chr9 10791619 10791620 - SC-3_LTR 5748 0.2157 (644/2985) 0 * * Os_TE_26256 Chr9 10786996 10786997 - SC-5 3770 0.0459 (137/2987) 0 * Os_TE_26255 Os_TE_26255 Chr9 10786992 10786991 + SC-5 3770 0.0460 (137/2979) 0 * Os_TE_26256 Os_TE_26244 Chr9 10784016 10784017 + RIREX_LTR 8828 0.0027 (8/2984) 0 * Os_TE_26243 Os_TE_26243 Chr9 10784012 10784011 - RIREX_LTR 8828 0.0027 (8/2981) 0 * Os_TE_26244 Os_TE_26228 Chr9 10781623 10781624 + RIRE5-LTR_OS 6427 0.1356 (398/2936) 0 * Os_TE_26227 Os_TE_26227 Chr9 10781617 10781616 - RIRE5-LTR_OS 6427 0.1397 (411/2943) 0 * Os_TE_26228 Os_TE_26203 Chr9 10772889 10772890 - OSTE9 421 0.0079 (22/2802) 0 * Os_TE_26202 Os_TE_26202 Chr9 10772885 10772884 + OSTE9 421 0.0078 (22/2811) 0 * Os_TE_26203 Os_TE_26185 Chr9 10761806 10761807 - ORSgTETN00200001 10994 0.0753 (213/2829) 0 * * Os_TE_26175 Chr9 10760225 10760224 + ORSgTEMT00100291 345 0.0007 (2/2966) 0 * Os_TE_26174 Os_TE_26174 Chr9 10760222 10760223 - ORSgTEMT00100865 348 0.0010 (3/2951) 0 * Os_TE_26175 Os_TE_26167 Chr9 10758357 10758356 + CASTAWAY 364 0.2718 (808/2973) 0 * * Os_TE_26161 Chr9 10758008 10758007 - STOWAWAY51_OS 246 0.0003 (1/2943) 0 * * Os_TE_26156 Chr9 10757604 10757605 + ORSgTEMT00600272 361 0.0003 (1/2953) 0 * Os_TE_26155 Os_TE_26155 Chr9 10757599 10757598 + ORSgTEMT00600376 329 0.0004 (1/2781) 0 * Os_TE_26156 Os_TE_26144 Chr9 10756718 10756719 + STOWAWAY36_OS 268 0.0067 (20/2969) 0 * Os_TE_26143 Os_TE_26143 Chr9 10756717 10756716 - STOWAWAY36_OS 268 0.0064 (19/2973) 0 * Os_TE_26144 Os_TE_26140 Chr9 10755895 10755896 + ORSiTERTOOT00296 5553 0.0064 (19/2990) 0 * Os_TE_26139 Os_TE_26139 Chr9 10755891 10755890 - SC-3_LTR 5748 0.0060 (18/2989) 0 * Os_TE_26140 Os_TE_26138 Chr9 10755810 10755809 + OSTE18 129 0.0431 (129/2991) 0 * Os_TE_26137 Os_TE_26137 Chr9 10755806 10755807 + OSTE18 129 0.0418 (125/2988) 0 * Os_TE_26138 Os_TE_26131 Chr9 10754635 10754636 + INDITTO 263 0.0027 (8/2982) 0 * Os_TE_26130 Os_TE_26130 Chr9 10754633 10754632 - INDITTO 263 0.0027 (8/2973) 0 * Os_TE_26131 Os_TE_26122 Chr9 10753137 10753138 - F569 228 0.0003 (1/2998) 0 * * Os_TE_26112 Chr9 10750143 10750142 - INDITTO 263 0.0741 (218/2942) 0 * * Os_TE_26111 Chr9 10750057 10750056 + TWIFB1 3737 0.0003 (1/2897) 0 * * Os_TE_26108 Chr9 10749241 10749240 - COPIA2-LTR_OS 6433 0.0003 (1/2915) 0 * * Os_TE_26106 Chr9 10749122 10749123 - RETRO1_LTR 8314 0.0017 (5/2987) 0 * Os_TE_26105 Os_TE_26105 Chr9 10749118 10749117 + RETRO1_LTR 8314 0.0013 (4/2985) 0 * Os_TE_26106 Os_TE_26104 Chr9 10749017 10749018 - CLOUD 734 0.0037 (11/2984) 0 * * Os_TE_26095 Chr9 10748460 10748461 + ORSgTETNOOT00908 242 0.2519 (731/2902) 0 * Os_TE_26094 Os_TE_26094 Chr9 10748458 10748457 + ORSgTETNOOT01522 239 0.2880 (853/2962) 0 * Os_TE_26095 Os_TE_26082 Chr9 10744455 10744456 + OSMU5 4881 0.0028 (8/2892) 0 * * Os_TE_26076 Chr9 10743428 10743427 + ENSPM4_OS 11610 0.0007 (2/2818) 0 * * Os_TE_26069 Chr9 10742758 10742757 - CACTA-Q 2268 0.0013 (4/2982) 0 * * Os_TE_26066 Chr9 10742090 10742091 + INDITTO 263 0.0013 (4/2984) 0 * Os_TE_26065 Os_TE_26065 Chr9 10742088 10742087 + ORSgTETNOOT02308 270 0.0013 (4/2985) 0 * Os_TE_26066 Os_TE_26064 Chr9 10741900 10741899 - OSLINE1-5 4688 0.1258 (376/2988) 0 * * Os_TE_26057 Chr9 10738922 10738923 + NDNA1TNA_OS 334 0.4227 (1261/2983) 0 * * Os_TE_25830 Chr9 10586266 10586265 + TRUNCATOR 2918 0.4219 (135/320) 0 * * Os_TE_25783 Chr9 10563848 10564075 + ORSgTEMT01602004 234 0.1325 (308/2324) 1 Intact * Os_TE_25778 Chr9 10559643 10552069 - MuDR4_OS 7610 0.5589 (185/331) 1 Intact Os_TE_25774 Os_TE_25774 Chr9 10552068 10559642 - MuDR4_OS 7610 0.5584 (172/308) 1 Intact Os_TE_25778 Os_TE_25751 Chr9 10526837 10526836 - TRUNCATOR 2918 0.0038 (11/2883) 0 * * Os_TE_25739 Chr9 10523709 10523708 - COPI2_LTR 4733 0.0003 (1/2980) 0 * * Os_TE_25736 Chr9 10523169 10523170 + COPIA2-LTR_OS 6433 0.0003 (1/2978) 0 * Os_TE_25735 Os_TE_25735 Chr9 10523165 10523164 - COPIA2-LTR_OS 6433 0.0003 (1/2977) 0 * Os_TE_25736 Os_TE_25718 Chr9 10515739 10515740 - ORSgTEMT02400179 221 0.0007 (2/2950) 0 * Os_TE_25717 Os_TE_25717 Chr9 10515738 10515737 - TYPEM 227 0.0007 (2/2955) 0 * Os_TE_25718 Os_TE_25690 Chr9 10497328 10497329 + OSTONOR1_LTR 6440 0.0003 (1/2967) 0 * Os_TE_25689 Os_TE_25689 Chr9 10497324 10497323 - ORSiTERT00100062 5674 0.0003 (1/2935) 0 * Os_TE_25690 Os_TE_25684 Chr9 10496610 10496963 - ORSgTEMT00600271 529 0.4641 (802/1728) 1 Intact * Os_TE_25680 Chr9 10494055 10494056 - SZ-48LTR 3632 0.0024 (7/2971) 0 * * Os_TE_25678 Chr9 10493514 10493513 - COPIA3-LTR_OS 5061 0.0013 (4/2974) 0 * * Os_TE_25674 Chr9 10490833 10490832 + ORSgTETN00200005 1121 0.4772 (1300/2724) 0 * * Os_TE_25661 Chr9 10485477 10485478 - ORSiTERTOOT00291 11421 0.0016 (4/2560) 0 * * Os_TE_25659 Chr9 10485002 10485001 - CACTA-H 1152 0.0070 (21/2994) 0 * * Os_TE_25649 Chr9 10482872 10482871 + ORSiOTOT00000037 220 0.0070 (21/2979) 0 * * Os_TE_25646 Chr9 10482433 10482432 + SPMLIKE 10989 0.0021 (6/2822) 0 * * Os_TE_25644 Chr9 10481576 10481575 - ORSgTETN00200001 10994 0.0023 (7/2998) 0 * * Os_TE_25642 Chr9 10480059 10480060 + ORSgTETNOOT00032 218 0.1890 (236/1249) 0 * * Os_TE_25634 Chr9 10477295 10477296 + ORSgTEMT01700376 152 0.0016 (2/1257) 0 * * Os_TE_25622 Chr9 10472931 10472932 + CACTA-H 1152 0.0016 (2/1250) 0 * * Os_TE_25621 Chr9 10471550 10471551 + RETROSAT4_LTR 13504 0.1187 (136/1146) 0 * Os_TE_25620 Os_TE_25620 Chr9 10471546 10471545 - SZ-35LTR 3853 0.1324 (154/1163) 0 * Os_TE_25621 Os_TE_25619 Chr9 10471204 10471205 + DS-RICE3N 525 0.0213 (26/1220) 0 * * Os_TE_25596 Chr9 10464959 10465201 - ORSgTEMT00900160 250 0.6131 (1258/2052) 1 Intact * Os_TE_25588 Chr9 10458778 10458777 - RETROSAT4_LTR 13504 0.0042 (5/1179) 0 * * Os_TE_25586 Chr9 10458759 10458758 - RETRO2_LTR 12874 0.0451 (53/1176) 0 * * Os_TE_25555 Chr9 10432353 10447166 - ORSgTETN00200001 10994 0.4530 (704/1554) 1 Intact * Os_TE_25543 Chr9 10423165 10423164 - TRUNCATOR 2918 0.0079 (8/1013) 0 * Os_TE_25542 Os_TE_25542 Chr9 10423164 10423165 + TRUNCATOR 2918 0.0030 (8/2653) 0 * Os_TE_25543 Os_TE_25522 Chr9 10414696 10414695 - TRUNCATOR 2918 0.6249 (628/1005) 0 * * Os_TE_25513 Chr9 10410372 10410373 - CACTA-J 1159 0.6419 (1746/2720) 0 * * Os_TE_25503 Chr9 10403702 10403703 - COPIA2-LTR_OS 6433 0.0021 (2/963) 0 * Os_TE_25502 Os_TE_25502 Chr9 10403698 10403697 + COPIA2-LTR_OS 6433 0.0021 (2/962) 0 * Os_TE_25503 Os_TE_25501 Chr9 10402639 10402640 + MUDRN1_OS 764 0.0083 (8/962) 0 * Os_TE_25500 Os_TE_25500 Chr9 10402631 10402630 - MUDRN1_OS 764 0.0083 (8/959) 0 * Os_TE_25501 Os_TE_25494 Chr9 10399729 10399728 + STOWAWAY41_OS 264 0.0015 (1/662) -1 * * Os_TE_25491 Chr9 10399288 10399287 - ORSgTETN00200001 10994 0.0105 (10/949) 0 * * Os_TE_25490 Chr9 10398339 10398340 + RETROSAT4_LTR 13504 0.0072 (13/1818) 0 * * Os_TE_25460 Chr9 10382521 10382081 - RIRE2_LTR 11306 0.3406 (342/1004) 1 Solo_LTR Os_TE_25458 Os_TE_25458 Chr9 10382081 10382521 + RIRE2_LTR 11306 0.3350 (336/1003) 1 Solo_LTR Os_TE_25460 Os_TE_25456 Chr9 10381935 10381936 - COPIA2-LTR_OS 6433 0.0010 (1/1020) 0 * * Os_TE_25455 Chr9 10380947 10380948 + RIRE5-LTR_OS 6427 0.4450 (1324/2975) 0 * Os_TE_25454 Os_TE_25454 Chr9 10380940 10380939 - RIRE5-LTR_OS 6427 0.4552 (1362/2992) 0 * Os_TE_25455 Os_TE_25450 Chr9 10380109 10380110 + RETRO2_LTR 12874 0.0070 (7/999) 0 * Os_TE_25449 Os_TE_25449 Chr9 10380105 10380104 - RETRO1_LTR 8314 0.0061 (7/1149) 0 * Os_TE_25450 Os_TE_25448 Chr9 10379959 10379958 - ORSiTERTOOT00368 5673 0.0003 (1/2979) 0 * * Os_TE_25441 Chr9 10377862 10377863 + OSTE20 496 0.3838 (1136/2960) 0 * * Os_TE_25439 Chr9 10377831 10377832 + SZ-48LTR 3632 0.0007 (2/2970) 0 * Os_TE_25438 Os_TE_25438 Chr9 10377827 10377826 - SZ-48LTR 3632 0.0003 (1/2892) 0 * Os_TE_25439 Os_TE_25435 Chr9 10377459 10377460 + SZ-48LTR 3632 0.1955 (583/2982) 0 * Os_TE_25434 Os_TE_25434 Chr9 10377455 10377454 - SZ-48LTR 3632 0.1960 (584/2980) 0 * Os_TE_25435 Os_TE_25426 Chr9 10375448 10375449 + ORSgTEMT00501356 145 0.0161 (48/2985) 0 * * Os_TE_25425 Chr9 10375382 10375383 - COPIA2-LTR_OS 6433 0.0003 (1/2983) 0 * * Os_TE_25423 Chr9 10374942 10374943 - AMYLTP 383 0.0738 (219/2967) 0 * * Os_TE_25405 Chr9 10371806 10371316 + OSTE20 496 0.0787 (229/2909) 1 Intact Os_TE_25404 Os_TE_25404 Chr9 10371316 10371805 + OSTE20 496 0.0944 (278/2946) 1 Intact Os_TE_25405 Os_TE_25401 Chr9 10370580 10370579 - RETROSAT4_LTR 13504 0.2345 (694/2960) 0 * * Os_TE_25398 Chr9 10368225 10368224 - ORSgTETN00200001 10994 0.0023 (7/2984) 0 * * Os_TE_25386 Chr9 10364946 10364945 + THRIA 534 0.0705 (211/2995) 0 * * Os_TE_25385 Chr9 10364747 10364748 + RIREX_LTR 8828 0.3859 (1140/2954) 0 * * Os_TE_25378 Chr9 10364069 10364070 - ORSgTETN00200001 10994 0.0080 (24/2991) 0 * Os_TE_25377 Os_TE_25377 Chr9 10364067 10364066 + SPMLIKE 10989 0.0067 (20/2986) 0 * Os_TE_25378 Os_TE_25374 Chr9 10362300 10362299 + ORSgTEMT06100010 269 0.1817 (540/2972) 0 * * Os_TE_25373 Chr9 10362272 10362273 + RIREX_LTR 8828 0.0677 (202/2982) 0 * Os_TE_25372 Os_TE_25372 Chr9 10362268 10362267 - RIRE2_LTR 11306 0.0739 (199/2694) 0 * Os_TE_25373 Os_TE_25370 Chr9 10362240 10362241 + SPMLIKE 10989 0.0017 (5/2982) 0 * * Os_TE_25361 Chr9 10351086 10351087 - RIRE3_LTR 12054 0.0072 (21/2929) 0 * * Os_TE_25358 Chr9 10350281 10350282 - RIRE2_LTR 11306 0.0662 (198/2993) 0 * Os_TE_25357 Os_TE_25357 Chr9 10350277 10350276 - ORSgTERT00201216 11284 0.0669 (200/2991) 0 * Os_TE_25358 Os_TE_25346 Chr9 10345858 10345859 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_25345 Os_TE_25345 Chr9 10345854 10345853 - COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_25346 Os_TE_25337 Chr9 10342367 10342366 + STOWAWAY21_OS 243 0.3877 (1153/2974) 0 * Os_TE_25336 Os_TE_25336 Chr9 10342366 10342367 + ORSgTEMT01601122 212 0.0042 (8/1899) 0 * Os_TE_25337 Os_TE_25324 Chr9 10336873 10336874 + RIRE2_LTR 11306 0.0003 (1/2968) 0 * Os_TE_25323 Os_TE_25323 Chr9 10336869 10336868 - RIRE2_LTR 11306 0.0003 (1/2964) 0 * Os_TE_25324 Os_TE_25313 Chr9 10336273 10336274 - DS-RICE2N 613 0.0047 (14/2999) 0 * Os_TE_25312 Os_TE_25312 Chr9 10336266 10336265 + DS-RICE4N 715 0.0043 (13/2999) 0 * Os_TE_25313 Os_TE_25311 Chr9 10335931 10335932 + SPMLIKE 10989 0.0023 (7/2996) 0 * Os_TE_25310 Os_TE_25310 Chr9 10335929 10335928 - ORSgTETN00200001 10994 0.0027 (8/2998) 0 * Os_TE_25311 Os_TE_25296 Chr9 10332074 10332075 + RIREX_LTR 8828 0.0010 (3/2965) 0 * Os_TE_25295 Os_TE_25295 Chr9 10332070 10332069 - RIREX_LTR 8828 0.0014 (4/2957) 0 * Os_TE_25296 Os_TE_25289 Chr9 10325114 10325113 - MuDR2_OS 6770 0.0011 (3/2812) 0 * * Os_TE_25284 Chr9 10323801 10323802 - RIREX_LTR 8828 0.0021 (6/2839) 0 * Os_TE_25283 Os_TE_25283 Chr9 10323797 10323796 + RIREX_LTR 8828 0.0021 (6/2833) 0 * Os_TE_25284 Os_TE_25243 Chr9 10306881 10306882 - RIRE3_LTR 12054 0.0010 (3/2997) 0 * Os_TE_25242 Os_TE_25242 Chr9 10306877 10306876 + RIRE3_LTR 12054 0.0010 (3/2997) 0 * Os_TE_25243 Os_TE_25241 Chr9 10306763 10306764 + COPIA2-LTR_OS 6433 0.0007 (2/2992) 0 * Os_TE_25240 Os_TE_25240 Chr9 10306759 10306758 - COPIA2-LTR_OS 6433 0.0007 (2/2994) 0 * Os_TE_25241 Os_TE_25239 Chr9 10306375 10306376 + RIREX_LTR 8828 0.0007 (2/2993) 0 * Os_TE_25238 Os_TE_25238 Chr9 10306371 10306370 - RIREX_LTR 8828 0.0007 (2/2995) 0 * Os_TE_25239 Os_TE_25197 Chr9 10285641 10285640 + DS-RICE4N 715 0.0007 (2/2960) 0 * * Os_TE_25196 Chr9 10285550 10285551 + RIREX_LTR 8828 0.0007 (2/2903) 0 * Os_TE_25195 Os_TE_25195 Chr9 10285546 10285545 - RIREX_LTR 8828 0.0007 (2/2963) 0 * Os_TE_25196 Os_TE_25194 Chr9 10285523 10285524 + ORSgTETNOOT00221 261 0.0011 (2/1886) 0 * * Os_TE_25161 Chr9 10270993 10270992 + ORSiTERTOOT00350 5275 0.0946 (180/1903) 0 * * Os_TE_25146 Chr9 10254832 10268800 - ORSiCMCM00100016 1387 0.5806 (1556/2680) 1 Intact * Os_TE_25144 Chr9 10254511 10254510 - TRUNCATOR 2918 0.0075 (20/2680) 0 * Os_TE_25143 Os_TE_25143 Chr9 10254510 10254511 + TRUNCATOR 2918 0.0090 (24/2678) 0 * Os_TE_25144 Os_TE_25140 Chr9 10253590 10253591 + COPIA2-LTR_OS 6433 0.0004 (1/2664) 0 * Os_TE_25139 Os_TE_25139 Chr9 10253586 10253585 - COPIA2-LTR_OS 6433 0.0004 (1/2615) 0 * Os_TE_25140 Os_TE_25136 Chr9 10252949 10252948 + HARB-1_OS 5166 0.0210 (55/2623) 0 * * Os_TE_25125 Chr9 10249083 10249082 - RETROSAT2LTR 12796 0.6425 (1596/2484) 0 * Os_TE_25124 Os_TE_25124 Chr9 10249080 10249081 - TRUNCATOR 2918 0.6273 (1513/2412) 0 * Os_TE_25125 Os_TE_25071 Chr9 10232108 10232109 + RETRO2_LTR 12874 0.0889 (202/2271) 0 * Os_TE_25070 Os_TE_25070 Chr9 10232104 10232103 - RETRO2_LTR 12874 0.0861 (195/2266) 0 * Os_TE_25071 Os_TE_25010 Chr9 10207442 10207443 - SZ-35LTR 3853 0.0008 (2/2491) 0 * Os_TE_25009 Os_TE_25009 Chr9 10207438 10207437 + RETROSAT4_LTR 13504 0.0007 (2/2776) 0 * Os_TE_25010 Os_TE_25008 Chr9 10207386 10207387 + RETROSAT2LTR 12796 0.0737 (197/2673) 0 * Os_TE_25007 Os_TE_25007 Chr9 10207384 10207383 - RETROSAT2LTR 12796 0.0008 (2/2494) 0 * Os_TE_25008 Os_TE_24996 Chr9 10204336 10204337 - SC-4_LTR 5218 0.0015 (4/2680) 0 * Os_TE_24995 Os_TE_24995 Chr9 10204332 10204331 + SC-4_LTR 5218 0.0015 (4/2682) 0 * Os_TE_24996 Os_TE_24990 Chr9 10198848 10188444 + ENSPM3_OS 10837 0.7679 (2002/2607) 1 Intact Os_TE_24964 Os_TE_24964 Chr9 10188444 10198848 - ENSPM3_OS 10837 0.7694 (2065/2684) 1 Intact Os_TE_24990 Os_TE_24962 Chr9 10188266 10187012 + SZ-30_LTR 6377 0.7714 (2068/2681) 1 Solo_LTR Os_TE_24958 Os_TE_24958 Chr9 10187017 10188267 - SZ-30_LTR 6377 0.7666 (2046/2669) 1 Solo_LTR Os_TE_24962 Os_TE_24953 Chr9 10184956 10184957 - ORSiTERTOOT00375 4690 0.2483 (639/2574) 0 * * Os_TE_24938 Chr9 10181651 10182031 - AMYLTP 383 0.3355 (920/2742) 1 Intact * Os_TE_24928 Chr9 10177183 10180176 + TRUNCATOR 2918 0.3243 (845/2606) 1 Intact * Os_TE_24917 Chr9 10174593 10174594 + RETROFIT2_LTR 4774 0.0081 (21/2587) 0 * Os_TE_24916 Os_TE_24916 Chr9 10174589 10174588 - RETROFIT2_LTR 4774 0.0085 (22/2591) 0 * Os_TE_24917 Os_TE_24905 Chr9 10170094 10170095 + RIREX_LTR 8828 0.0004 (1/2457) 0 * Os_TE_24904 Os_TE_24904 Chr9 10170090 10170089 - RIREX_LTR 8828 0.0008 (2/2497) 0 * Os_TE_24905 Os_TE_24887 Chr9 10164237 10164236 - TRUNCATOR 2918 0.0020 (6/2982) 0 * Os_TE_24886 Os_TE_24886 Chr9 10164236 10164237 + TRUNCATOR 2918 0.0023 (7/2987) 0 * Os_TE_24887 Os_TE_24884 Chr9 10163681 10163682 - RETROSAT4_LTR 13504 0.1283 (384/2993) 0 * Os_TE_24883 Os_TE_24883 Chr9 10163677 10163676 + RETROSAT4_LTR 13504 0.1182 (352/2977) 0 * Os_TE_24884 Os_TE_24877 Chr9 10159616 10159615 - MDR2 6967 0.0029 (8/2804) 0 * * Os_TE_24876 Chr9 10157348 10157349 - ORSgTETN00200001 10994 0.0003 (1/2997) 0 * * Os_TE_24875 Chr9 10156481 10156482 - SC-3_LTR 5748 0.0027 (8/2989) 0 * Os_TE_24874 Os_TE_24874 Chr9 10156477 10156476 + ORSiTERTOOT00296 5553 0.0030 (9/2986) 0 * Os_TE_24875 Os_TE_24864 Chr9 10154008 10154007 - ORSgTEMT02400179 221 0.0344 (103/2993) 0 * * Os_TE_24836 Chr9 10147123 10138555 - MuDR3_OS 8604 0.3139 (924/2944) 1 Intact Os_TE_24828 Os_TE_24828 Chr9 10138554 10147123 - MuDR3_OS 8604 0.3195 (944/2955) 1 Intact Os_TE_24836 Os_TE_24827 Chr9 10137547 10133990 - SEVERIN-2 1952 0.3045 (892/2929) 1 Intact * Os_TE_24821 Chr9 10131379 10131378 - SEVERIN-2 1952 0.0020 (6/2975) 0 * * Os_TE_24819 Chr9 10129673 10129674 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_24818 Os_TE_24818 Chr9 10129669 10129668 - COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_24819 Os_TE_24815 Chr9 10125114 10125113 + STOWAWAY44_OS 240 0.0003 (1/2985) 0 * * Os_TE_24807 Chr9 10123941 10123942 - SZ-55_LTR 10318 0.0003 (1/2961) 0 * Os_TE_24806 Os_TE_24806 Chr9 10123937 10123936 + SZ-55_LTR 10318 0.0003 (1/2961) 0 * Os_TE_24807 Os_TE_24802 Chr9 10122825 10122824 + ORSgTEMT01602181 239 0.0007 (2/2960) 0 * Os_TE_24801 Os_TE_24801 Chr9 10122822 10122823 - ORSgTEMT01601432 239 0.0007 (2/2975) 0 * Os_TE_24802 Os_TE_24789 Chr9 10117656 10117657 + RIREX_LTR 8828 0.0007 (2/2988) 0 * Os_TE_24788 Os_TE_24788 Chr9 10117652 10117651 - RIREX_LTR 8828 0.0007 (2/2985) 0 * Os_TE_24789 Os_TE_24787 Chr9 10117089 10117088 + ORSgTEMT01601591 242 0.0007 (2/2990) 0 * Os_TE_24786 Os_TE_24786 Chr9 10117083 10117084 + STOWAWAY51_OS 246 0.0007 (2/2977) 0 * Os_TE_24787 Os_TE_24780 Chr9 10112629 10112630 + COPIA2-LTR_OS 6433 0.0003 (1/2978) 0 * Os_TE_24779 Os_TE_24779 Chr9 10112625 10112624 - COPIA2-LTR_OS 6433 0.0003 (1/2981) 0 * Os_TE_24780 Os_TE_24760 Chr9 10106534 10106533 + SINE1OS 127 0.0084 (25/2990) 0 * * Os_TE_24719 Chr9 10089815 10089816 - STOWAWAY11_OS 292 0.1142 (69/604) 0 * Os_TE_24718 Os_TE_24718 Chr9 10089814 10089813 + STOWAWAY11_OS 292 0.1122 (68/606) 0 * Os_TE_24719 Os_TE_24714 Chr9 10088372 10088371 + TYPEU4 402 0.0627 (63/1004) 0 * * Os_TE_24713 Chr9 10087947 10087948 + ORSgTEMT00600408 352 0.0588 (57/969) 0 * * Os_TE_24709 Chr9 10087338 10087339 - TREP215 239 0.0010 (1/985) 0 * * Os_TE_24685 Chr9 10080403 10080404 + OSMU5 4881 0.0674 (67/994) 0 * Os_TE_24684 Os_TE_24684 Chr9 10080399 10080398 - OSTE15 1168 0.0669 (66/987) 0 * Os_TE_24685 Os_TE_24665 Chr9 10074339 10074712 + BUHUI 375 0.5977 (951/1591) 1 Intact * Os_TE_24632 Chr9 10051495 10039881 + RETROSAT3_LTR 11537 0.7266 (861/1185) 1 Intact Os_TE_24609 Os_TE_24609 Chr9 10039881 10051495 - RETROSAT3_LTR 11537 0.7168 (805/1123) 1 Intact Os_TE_24632 Os_TE_24608 Chr9 10039864 10039865 - RIRE2_LTR 11306 0.3488 (414/1187) 0 * Os_TE_24607 Os_TE_24607 Chr9 10039860 10039859 - ORSgTERT00201216 11284 0.4336 (415/957) 0 * Os_TE_24608 Os_TE_24605 Chr9 10038293 10038294 + ORSiTERTOOT00296 5553 0.0015 (1/669) 0 * * Os_TE_24582 Chr9 10028172 10028173 + COPIA2-LTR_OS 6433 0.0003 (1/2956) 0 * Os_TE_24581 Os_TE_24581 Chr9 10028168 10028167 - COPIA2-LTR_OS 6433 0.0003 (1/2962) 0 * Os_TE_24582 Os_TE_24580 Chr9 10028139 10028140 - TYPEM 227 0.0057 (17/2964) 0 * Os_TE_24579 Os_TE_24579 Chr9 10028138 10028137 - ORSgTEMT02400179 221 0.0061 (18/2972) 0 * Os_TE_24580 Os_TE_24562 Chr9 10025637 10025380 - ORSgTEMT00101174 225 0.3023 (882/2918) 1 Intact * Os_TE_24543 Chr9 10016246 10016247 - SEVERIN-2 1952 0.0050 (15/2993) 0 * * Os_TE_24537 Chr9 10009562 10009563 + TRUNCATOR2_LTR 2904 0.0003 (1/2984) 0 * * Os_TE_24531 Chr9 10007730 10007729 - ORSiTERT00200154 9386 0.0062 (17/2728) 0 * * Os_TE_24493 Chr9 9985506 9985507 - TRUNCATOR 2918 0.0013 (4/2975) 0 * * Os_TE_24488 Chr9 9980603 9980602 + CACTA-B 1103 0.0003 (1/2943) 0 * * Os_TE_24474 Chr9 9967772 9967773 - HARB-1_OS 5166 0.0003 (1/2971) 0 * Os_TE_24473 Os_TE_24473 Chr9 9967770 9967769 + HARB-1_OS 5166 0.0003 (1/2973) 0 * Os_TE_24474 Os_TE_24471 Chr9 9967597 9967596 - ORSgTEMT02400179 221 0.0138 (41/2981) 0 * * Os_TE_24464 Chr9 9966678 9966679 + INDITTO 263 0.0035 (10/2885) 0 * Os_TE_24463 Os_TE_24463 Chr9 9966676 9966675 - INDITTO 263 0.0035 (10/2888) 0 * Os_TE_24464 Os_TE_24456 Chr9 9965425 9965426 - COPIA2-LTR_OS 6433 0.0010 (2/2056) 0 * Os_TE_24455 Os_TE_24455 Chr9 9965421 9965420 + COPIA2-LTR_OS 6433 0.0010 (2/2058) 0 * Os_TE_24456 Os_TE_24452 Chr9 9964593 9964594 + GYPSY-A_LTR 8951 0.0038 (9/2352) 0 * Os_TE_24451 Os_TE_24451 Chr9 9964589 9964588 - GYPSY-A_LTR 8951 0.0036 (10/2777) 0 * Os_TE_24452 Os_TE_24385 Chr9 9937324 9937323 + TRUNCATOR 2918 0.0067 (20/2992) 0 * Os_TE_24384 Os_TE_24384 Chr9 9937323 9937324 - TRUNCATOR 2918 0.0064 (19/2990) 0 * Os_TE_24385 Os_TE_24364 Chr9 9930170 9930171 - SZ-35LTR 3853 0.0160 (35/2188) 0 * Os_TE_24363 Os_TE_24363 Chr9 9930166 9930165 + RETROSAT4_LTR 13504 0.0116 (34/2942) 0 * Os_TE_24364 Os_TE_24362 Chr9 9927161 9927009 + ORSgTEMT01702004 154 0.7181 (2125/2959) 1 Intact Os_TE_24361 Os_TE_24361 Chr9 9927009 9927160 - ORSgTEMT01702216 170 0.7129 (2101/2947) 1 Intact Os_TE_24362 Os_TE_24357 Chr9 9925198 9925197 - COPIA2-LTR_OS 6433 0.0010 (3/2951) 0 * * Os_TE_24356 Chr9 9925165 9924843 + ORSgTEMT02900076 336 0.7273 (2115/2908) 1 Intact Os_TE_24355 Os_TE_24355 Chr9 9924857 9925165 - ORSgTEMT02900061 318 0.7188 (2119/2948) 1 Intact Os_TE_24356 Os_TE_24354 Chr9 9923232 9923233 - ORSgTETN00200001 10994 0.0057 (17/2984) 0 * Os_TE_24353 Os_TE_24353 Chr9 9923230 9923229 + SPMLIKE 10989 0.0064 (19/2978) 0 * Os_TE_24354 Os_TE_24352 Chr9 9922921 9922920 + EnSpm-N1_OS 4256 0.0335 (100/2986) 0 * Os_TE_24351 Os_TE_24351 Chr9 9922917 9922918 - EnSpm-N1_OS 4256 0.0322 (96/2977) 0 * Os_TE_24352 Os_TE_24349 Chr9 9921532 9921531 - ENSPM4_OS 11610 0.0277 (81/2923) 0 * * Os_TE_24344 Chr9 9920947 9920948 - COPIA1-LTR_OS 9292 0.0024 (5/2085) 0 * Os_TE_24343 Os_TE_24343 Chr9 9920943 9920942 + SZ-30_LTR 6377 0.0024 (5/2093) 0 * Os_TE_24344 Os_TE_24341 Chr9 9920284 9920285 - ORSgTEMT02400179 221 0.0171 (51/2987) 0 * Os_TE_24340 Os_TE_24340 Chr9 9920283 9920282 - TYPEM 227 0.0174 (51/2931) 0 * Os_TE_24341 Os_TE_24339 Chr9 9920079 9920080 + ORSgTEMT01600421 237 0.2153 (573/2661) 0 * * Os_TE_24338 Chr9 9919990 9919989 + SZ-67LTR 1540 0.0003 (1/2960) 0 * * Os_TE_24336 Chr9 9918154 9918155 - ENSPM4_OS 11610 0.3207 (956/2981) 0 * * Os_TE_24326 Chr9 9915715 9915716 + RETROSAT4_LTR 13504 0.0010 (2/1971) 0 * Os_TE_24325 Os_TE_24325 Chr9 9915711 9915710 - SZ-35LTR 3853 0.0010 (2/2003) 0 * Os_TE_24326 Os_TE_24317 Chr9 9914666 9914667 - RETROSAT4_LTR 13504 0.3165 (948/2995) 0 * Os_TE_24316 Os_TE_24316 Chr9 9914662 9914661 + RETROSAT4_LTR 13504 0.3133 (935/2984) 0 * Os_TE_24317 Os_TE_24308 Chr9 9910658 9910659 + SPMLIKE 10989 0.0258 (75/2903) 0 * Os_TE_24307 Os_TE_24307 Chr9 9910656 9910655 - ORSgTETN00200001 10994 0.0372 (108/2902) 0 * Os_TE_24308 Os_TE_24306 Chr9 9910251 9910252 + ORSgTEMT00300063 413 0.0024 (6/2469) 0 * * Os_TE_24303 Chr9 9909172 9907817 + SZ-21LTR 1236 0.3685 (605/1642) 1 Intact * Os_TE_24300 Chr9 9907290 9907291 - RETROSAT4_LTR 13504 0.0032 (2/619) 0 * Os_TE_24299 Os_TE_24299 Chr9 9907286 9907285 + RETROSAT4_LTR 13504 0.0016 (1/617) 0 * Os_TE_24300 Os_TE_24297 Chr9 9905935 9905934 + SINE1R5_OS 121 0.2194 (122/556) 0 * * Os_TE_24292 Chr9 9904689 9904690 - TRUNCATOR2_LTR 2904 0.0694 (41/591) 0 * * Os_TE_24289 Chr9 9903958 9903959 - COPIA1-LTR_OS 9292 0.0086 (5/581) 0 * * Os_TE_24258 Chr9 9894811 9894810 + RIRE3_LTR 12054 0.0170 (35/2060) 0 * * Os_TE_24257 Chr9 9894620 9889835 - SZ-62LTR 3649 0.3160 (554/1753) 1 Intact Os_TE_24248 Os_TE_24248 Chr9 9889835 9894613 + SZ-62LTR 3649 0.2585 (532/2058) 1 Intact Os_TE_24257 Os_TE_24245 Chr9 9888746 9888747 - TRUNCATOR 2918 0.0508 (104/2049) 0 * * Os_TE_24244 Chr9 9888669 9888670 + RETROSAT4_LTR 13504 0.0289 (60/2078) 0 * * Os_TE_24243 Chr9 9888249 9888248 + TRUNCATOR 2918 0.0350 (73/2088) 0 * Os_TE_24242 Os_TE_24242 Chr9 9888248 9888249 - TRUNCATOR 2918 0.0331 (69/2083) 0 * Os_TE_24243 Os_TE_24235 Chr9 9881932 9881933 + SPMLIKE 10989 0.1059 (65/614) 0 * * Os_TE_24234 Chr9 9881745 9881744 - CACTA-I 1124 0.1109 (69/622) 0 * * Os_TE_24231 Chr9 9880617 9880938 + TYPEU1 380 0.3821 (528/1382) 1 Intact * Os_TE_24229 Chr9 9880482 9879187 + CACTA-B 1103 0.2997 (455/1518) 1 Intact Os_TE_24227 Os_TE_24227 Chr9 9879187 9880479 - CACTA-M 1129 0.2973 (451/1517) 1 Intact Os_TE_24229 Os_TE_24225 Chr9 9878696 9878697 + DITAILA 257 0.0067 (3/446) 0 * * Os_TE_24218 Chr9 9877508 9877509 - RIRE2_LTR 11306 0.6970 (1341/1924) 0 * Os_TE_24217 Os_TE_24217 Chr9 9877504 9877503 - ORSgTERT00201216 11284 0.2186 (167/764) 0 * Os_TE_24218 Os_TE_24216 Chr9 9877028 9877029 + ENSPM3_OS 10837 0.0326 (63/1931) 0 * Os_TE_24215 Os_TE_24215 Chr9 9877026 9877025 - ENSPM3_OS 10837 0.0280 (54/1931) 0 * Os_TE_24216 Os_TE_24212 Chr9 9876046 9876047 - NDNA1TNA_OS 334 0.3465 (578/1668) 0 * Os_TE_24211 Os_TE_24211 Chr9 9876045 9876044 - ORSgTEMT00100607 336 0.4000 (748/1870) 0 * Os_TE_24212 Os_TE_24194 Chr9 9869114 9869115 - SZ-48LTR 3632 0.1319 (72/546) 0 * * Os_TE_24193 Chr9 9868824 9868823 + ORSgTEMT02400014 229 0.4040 (755/1869) 0 * Os_TE_24192 Os_TE_24192 Chr9 9868816 9868817 - ORSgTEMT02400179 221 0.4066 (760/1869) 0 * Os_TE_24193 Os_TE_24191 Chr9 9868704 9868705 + SPMLIKE 10989 0.0340 (64/1880) 0 * * Os_TE_24183 Chr9 9865545 9865699 + TNR2 157 0.6320 (1855/2935) 0.85 Intact * Os_TE_24172 Chr9 9858730 9858731 + STOWAWAY30_OS 147 0.0444 (130/2930) 0 * * Os_TE_24171 Chr9 9858493 9858492 - CLOUD 734 0.0422 (123/2913) 0 * * Os_TE_24169 Chr9 9857977 9857976 + ORSgTEMT01602181 239 0.0061 (18/2957) 0 * Os_TE_24168 Os_TE_24168 Chr9 9857974 9857975 + ORSgTEMT01602181 239 0.0061 (18/2963) 0 * Os_TE_24169 Os_TE_24167 Chr9 9855901 9855902 + ORSgTEMT00901798 232 0.4596 (1355/2948) 0 * * Os_TE_24165 Chr9 9855804 9855803 - ORSgTEMT00900145 249 0.4635 (1372/2960) 0 * * Os_TE_24140 Chr9 9847438 9847439 + COPI2_LTR 4733 0.1284 (345/2687) 0 * Os_TE_24139 Os_TE_24139 Chr9 9847434 9847433 - COPI2_LTR 4733 0.1256 (337/2683) 0 * Os_TE_24140 Os_TE_24120 Chr9 9838423 9838424 + CACTA-B 1103 0.0119 (35/2934) 0 * * Os_TE_24115 Chr9 9833904 9833905 + SINE03_OS 360 0.0011 (2/1822) 0 * * Os_TE_24114 Chr9 9833150 9833149 + DS-RICE3N 525 0.3950 (1104/2795) 0 * * Os_TE_24113 Chr9 9832830 9832831 - AMYLTP 383 0.0007 (2/2959) 0 * Os_TE_24112 Os_TE_24112 Chr9 9832822 9832821 + AMYLTP 383 0.0007 (2/2961) 0 * Os_TE_24113 Os_TE_24107 Chr9 9832404 9832403 - ORSgTEMT01602413 239 0.3844 (1087/2828) 0 * Os_TE_24106 Os_TE_24106 Chr9 9832401 9832402 - ORSgTEMT01602413 239 0.4129 (1214/2940) 0 * Os_TE_24107 Os_TE_24105 Chr9 9832007 9827026 - ORSiTERTOOT00358 4932 0.4011 (1198/2987) 1 Intact * Os_TE_24102 Chr9 9826159 9826160 + COPIA2-LTR_OS 6433 0.0040 (12/2996) 0 * Os_TE_24101 Os_TE_24101 Chr9 9826155 9826154 - COPIA2-LTR_OS 6433 0.0040 (12/2966) 0 * Os_TE_24102 Os_TE_24100 Chr9 9825080 9825081 + RETROSAT4_LTR 13504 0.1694 (475/2804) 0 * Os_TE_24099 Os_TE_24099 Chr9 9825076 9825075 - RETROSAT4_LTR 13504 0.1769 (482/2725) 0 * Os_TE_24100 Os_TE_24083 Chr9 9818811 9819049 + ORSgTEMT01602181 239 0.7819 (1653/2114) 1 Intact * Os_TE_24037 Chr9 9799486 9799487 + RETROSAT4_LTR 13504 0.0132 (23/1743) 0 * Os_TE_24036 Os_TE_24036 Chr9 9799482 9799481 - SZ-35LTR 3853 0.0132 (23/1746) 0 * Os_TE_24037 Os_TE_24010 Chr9 9790620 9790621 - RIRE2_LTR 11306 0.0017 (5/2996) 0 * * Os_TE_23987 Chr9 9788762 9788763 + CACTA-B 1103 0.0018 (5/2852) 0 * * Os_TE_23986 Chr9 9788066 9788067 - CACTA-M 1129 0.0027 (8/2968) 0 * Os_TE_23985 Os_TE_23985 Chr9 9788064 9788063 + CACTA-M 1129 0.0024 (7/2953) 0 * Os_TE_23986 Os_TE_23983 Chr9 9787415 9787416 + SPMLIKE 10989 0.0164 (49/2986) 0 * * Os_TE_23971 Chr9 9781238 9781422 + ORSiTERT00400053 655 0.7313 (2074/2836) 1 Intact * Os_TE_23951 Chr9 9767896 9768312 - ORSgTEMT01900024 348 0.7076 (2079/2938) 1 Intact * Os_TE_23920 Chr9 9756684 9756345 + ORSgTEMT00100531 325 0.4524 (1041/2301) 1 Intact Os_TE_23917 Os_TE_23917 Chr9 9756347 9756682 + NDNA1TNA_OS 334 0.4377 (995/2273) 1 Intact Os_TE_23920 Os_TE_23905 Chr9 9752319 9752320 - RIRE2_LTR 11306 0.0291 (62/2133) 0 * Os_TE_23904 Os_TE_23904 Chr9 9752315 9752314 + RIRE2_LTR 11306 0.0285 (61/2138) 0 * Os_TE_23905 Os_TE_23897 Chr9 9749241 9749242 - COPIA2-LTR_OS 6433 0.0009 (2/2109) 0 * Os_TE_23896 Os_TE_23896 Chr9 9749237 9749236 + COPIA2-LTR_OS 6433 0.0010 (2/2102) 0 * Os_TE_23897 Os_TE_23895 Chr9 9749039 9749038 - AMYLTP 383 0.0338 (71/2101) 0 * * Os_TE_23878 Chr9 9743337 9743338 - OSTE33 1012 0.1820 (503/2763) 0 * * Os_TE_23870 Chr9 9740472 9740473 - TRUNCATOR2_LTR 2904 0.0019 (3/1552) 0 * Os_TE_23869 Os_TE_23869 Chr9 9740468 9740467 + ORSiCMCM00100019 2717 0.0074 (18/2425) 0 * Os_TE_23870 Os_TE_23851 Chr9 9731072 9734186 - RIRE3_LTR 12054 0.4905 (1031/2102) 1 Solo_LTR * Os_TE_23783 Chr9 9696296 9696295 + SEVERIN-2 1952 0.0005 (1/1950) 0 * * Os_TE_23782 Chr9 9695122 9695123 - SEVERIN-2 1952 0.0005 (1/2134) 0 * * Os_TE_23768 Chr9 9689038 9689037 - TRUNCATOR2_LTR 2904 0.0005 (1/2134) 0 * * Os_TE_23764 Chr9 9682340 9682339 - ORSgTEMT01702045 137 0.0326 (70/2144) 0 * Os_TE_23763 Os_TE_23763 Chr9 9682337 9682338 + ORSgTEMT01702111 154 0.0329 (71/2156) 0 * Os_TE_23764 Os_TE_23761 Chr9 9681685 9681686 + OSTE20 496 0.0234 (50/2134) 0 * Os_TE_23760 Os_TE_23760 Chr9 9681681 9681680 + OSTE20 496 0.0230 (49/2129) 0 * Os_TE_23761 Os_TE_23746 Chr9 9677975 9677976 - COPIA2-LTR_OS 6433 0.0043 (9/2085) 0 * * Os_TE_23735 Chr9 9672229 9670593 + SZ-55_LTR 10318 0.6870 (2059/2997) 1 Solo_LTR Os_TE_23734 Os_TE_23734 Chr9 9670593 9672229 - SZ-55_LTR 10318 0.6712 (1966/2929) 1 Solo_LTR Os_TE_23735 Os_TE_23731 Chr9 9668055 9668214 + ORSgTEMT01700636 156 0.7112 (2120/2981) 1 Intact * Os_TE_23730 Chr9 9668007 9668006 + STOWAWAY50_OS 174 0.0403 (120/2976) 0 * * Os_TE_23728 Chr9 9667528 9667527 - SEVERIN-2 1952 0.0027 (8/2997) 0 * Os_TE_23727 Os_TE_23727 Chr9 9667527 9667528 + SEVERIN-2 1952 0.0027 (8/2995) 0 * Os_TE_23728 Os_TE_23719 Chr9 9665891 9665892 + MERMITEB 1610 0.0034 (8/2383) 0 * Os_TE_23718 Os_TE_23718 Chr9 9665885 9665884 - MERMITE18B 1306 0.0014 (4/2920) 0 * Os_TE_23719 Os_TE_23712 Chr9 9661065 9661066 + NDNA1TNA_OS 334 0.0029 (8/2794) 0 * Os_TE_23711 Os_TE_23711 Chr9 9661063 9661062 - NDNA1TNA_OS 334 0.0027 (8/2956) 0 * Os_TE_23712 Os_TE_23700 Chr9 9655774 9655773 - ORSgTEMT01601208 238 0.0121 (36/2965) 0 * Os_TE_23699 Os_TE_23699 Chr9 9655771 9655772 - ORSgTEMT01600639 228 0.0121 (36/2970) 0 * Os_TE_23700 Os_TE_23696 Chr9 9652133 9652132 - COWARD 200 0.0581 (157/2700) 0 * * Os_TE_23688 Chr9 9647088 9647089 - ORSgTEMT02400179 221 0.0854 (224/2624) 0 * Os_TE_23687 Os_TE_23687 Chr9 9647087 9647086 - TYPEM 227 0.2150 (644/2995) 0 * Os_TE_23688 Os_TE_23678 Chr9 9640642 9640643 - DS-RICE2N 613 0.0158 (47/2973) 0 * Os_TE_23677 Os_TE_23677 Chr9 9640635 9640634 + DS-RICE4N 715 0.0162 (48/2970) 0 * Os_TE_23678 Os_TE_23667 Chr9 9633907 9633908 + ORSiTERTOOT00097 759 0.0003 (1/2995) 0 * * Os_TE_23662 Chr9 9632813 9632814 - SZ-52_LTR 13107 0.0007 (2/2956) 0 * Os_TE_23661 Os_TE_23661 Chr9 9632809 9632808 + SZ-52_LTR 13107 0.0007 (2/2960) 0 * Os_TE_23662 Os_TE_23647 Chr9 9628768 9628769 + ORSgTEMT00502094 140 0.0178 (53/2983) 0 * * Os_TE_23608 Chr9 9610279 9610280 - ORSgTERT00201216 11284 0.0105 (26/2467) 0 * Os_TE_23607 Os_TE_23607 Chr9 9610275 9610274 - RIRE2_LTR 11306 0.0105 (26/2468) 0 * Os_TE_23608 Os_TE_23606 Chr9 9609463 9609464 + RETRO2A_LTR 12895 0.0037 (9/2465) 0 * Os_TE_23605 Os_TE_23605 Chr9 9609459 9609458 - RETRO1_LTR 8314 0.0032 (8/2466) 0 * Os_TE_23606 Os_TE_23604 Chr9 9609374 9609375 + ORSiTERTOOT00291 11421 0.0016 (4/2466) 0 * Os_TE_23603 Os_TE_23603 Chr9 9609370 9609369 - ORSiTERTOOT00291 11421 0.0020 (5/2466) 0 * Os_TE_23604 Os_TE_23593 Chr9 9607030 9607029 + TWIFB1 3737 0.1854 (548/2956) 0 * * Os_TE_23584 Chr9 9605067 9605066 + ORSgTEMT00501279 126 0.1911 (568/2973) 0 * * Os_TE_23583 Chr9 9604827 9602797 - DS-RICE4N 715 0.8184 (2452/2996) 1 Intact * Os_TE_23563 Chr9 9600754 9600755 - ORSgTEMT00400010 151 0.8247 (2433/2950) 0.92 * * Os_TE_23561 Chr9 9600031 9599783 - ORSgTEMT00900402 248 0.8183 (2257/2758) 1 Intact Os_TE_23560 Os_TE_23560 Chr9 9599781 9600030 - ORSgTEMT00901138 254 0.8083 (2269/2807) 1 Intact Os_TE_23561 Os_TE_23541 Chr9 9594414 9597411 + GYPSY-A_LTR 8951 0.8168 (2389/2925) 1 Solo_LTR * Os_TE_23530 Chr9 9592856 9588448 - BAJIELTR 4500 0.8363 (2416/2889) 1 Intact * Os_TE_23518 Chr9 9585663 9585664 - ORSgTEMT00502214 125 0.1905 (563/2956) 0.22 * * Os_TE_23513 Chr9 9585161 9585160 - ORSgTEMT00501447 126 0.0031 (9/2901) 0 * * Os_TE_23508 Chr9 9583292 9583293 + ORSgTEMT00900258 259 0.1943 (575/2959) 0 * * Os_TE_23505 Chr9 9582344 9582343 - F770 284 0.0020 (6/2996) 0 * * Os_TE_23499 Chr9 9576917 9576918 - ORSgTEMT02400179 221 0.0412 (123/2988) 0 * Os_TE_23498 Os_TE_23498 Chr9 9576916 9576915 - TYPEM 227 0.0415 (124/2985) 0 * Os_TE_23499 Os_TE_23485 Chr9 9571572 9571573 + COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_23484 Os_TE_23484 Chr9 9571568 9571567 - COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_23485 Os_TE_23477 Chr9 9569139 9569138 - STOWAWAY51_OS 246 0.0262 (71/2707) 0 * * Os_TE_23474 Chr9 9568501 9568502 - COPIA2-LTR_OS 6433 0.0020 (6/2981) 0 * Os_TE_23473 Os_TE_23473 Chr9 9568497 9568496 + COPIA2-LTR_OS 6433 0.0020 (6/2976) 0 * Os_TE_23474 Os_TE_23471 Chr9 9567320 9567319 - ORSgTEMT02400246 177 0.0003 (1/2969) 0 * * Os_TE_23464 Chr9 9565383 9565384 + OSTE33 1012 0.0500 (136/2719) 0 * Os_TE_23463 Os_TE_23463 Chr9 9565380 9565379 + OSTE33 1012 0.0529 (144/2721) 0 * Os_TE_23464 Os_TE_23450 Chr9 9561619 9561618 - RIREX_LTR 8828 0.0014 (4/2885) 0 * * Os_TE_23447 Chr9 9560829 9560828 - TRUNCATOR 2918 0.0896 (248/2768) 0 * Os_TE_23446 Os_TE_23446 Chr9 9560828 9560829 + TRUNCATOR 2918 0.1080 (320/2962) 0 * Os_TE_23447 Os_TE_23432 Chr9 9557587 9557588 + DS-RICE4N 715 0.0007 (2/2998) 0 * Os_TE_23431 Os_TE_23431 Chr9 9557580 9557579 - DS-RICE2N 613 0.0007 (2/2997) 0 * Os_TE_23432 Os_TE_23424 Chr9 9556105 9556104 - COPIA2-LTR_OS 6433 0.0007 (2/2944) 0 * * Os_TE_23408 Chr9 9552616 9552615 + ORSgTEMT01700465 155 0.0428 (122/2852) 0 * Os_TE_23407 Os_TE_23407 Chr9 9552613 9552614 - ORSgTEMT01701195 144 0.0408 (115/2817) 0 * Os_TE_23408 Os_TE_23386 Chr9 9545975 9545974 + CACTA-B 1103 0.0118 (25/2119) 0 * * Os_TE_23384 Chr9 9545606 9545607 - COPI2_LTR 4733 0.1154 (309/2678) 0 * Os_TE_23383 Os_TE_23383 Chr9 9545602 9545601 + COPI2_LTR 4733 0.1143 (307/2685) 0 * Os_TE_23384 Os_TE_23339 Chr9 9518442 9518443 - ORSiTERT00200154 9386 0.0087 (19/2180) 0 * Os_TE_23338 Os_TE_23338 Chr9 9518436 9518435 + TRUNCATOR 2918 0.0103 (22/2146) 0 * Os_TE_23339 Os_TE_23329 Chr9 9511430 9511431 + SPMLIKE 10989 0.0003 (1/2982) 0 * Os_TE_23328 Os_TE_23328 Chr9 9511428 9511427 - SPMLIKE 10989 0.0007 (2/2993) 0 * Os_TE_23329 Os_TE_23327 Chr9 9511085 9511086 + ORSgTEMT00600124 361 0.0037 (11/2949) 0 * Os_TE_23326 Os_TE_23326 Chr9 9511083 9511082 + CASTAWAY 364 0.0037 (11/2960) 0 * Os_TE_23327 Os_TE_23321 Chr9 9509561 9509560 + RETROSAT3_LTR 11537 0.0081 (21/2607) -1 * * Os_TE_23312 Chr9 9508052 9508053 + RETRO2_LTR 12874 0.0187 (47/2519) 0 * * Os_TE_23308 Chr9 9506619 9506620 + OSTONOR1_LTR 6440 0.0170 (51/2999) 0 * * Os_TE_23282 Chr9 9498830 9498831 - MERMITE18E 1528 0.0075 (22/2940) 0 * Os_TE_23281 Os_TE_23281 Chr9 9498826 9498825 + MERMITE18E 1528 0.0078 (23/2945) 0 * Os_TE_23282 Os_TE_23279 Chr9 9497197 9497198 + ORSiTERTOOT00296 5553 0.0003 (1/2975) 0 * Os_TE_23278 Os_TE_23278 Chr9 9497193 9497192 - SC-3_LTR 5748 0.0003 (1/2997) 0 * Os_TE_23279 Os_TE_23277 Chr9 9495009 9495008 + F1275 157 0.0088 (25/2845) 0 * * Os_TE_23271 Chr9 9493811 9493812 - NDNA1TNA_OS 334 0.0071 (21/2962) 0 * Os_TE_23270 Os_TE_23270 Chr9 9493809 9493808 + NDNA1TNA_OS 334 0.0067 (20/2963) 0 * Os_TE_23271 Os_TE_23261 Chr9 9488552 9488553 - SZ-22_LTR 4403 0.0168 (50/2983) 0 * Os_TE_23260 Os_TE_23260 Chr9 9488548 9488547 + ORSiTERTOOT00226 792 0.0168 (50/2984) 0 * Os_TE_23261 Os_TE_23234 Chr9 9481633 9481634 + ORSiTERTOOT00034 791 0.0007 (2/2825) 0 * * Os_TE_23210 Chr9 9475273 9475272 - CACTA-J 1159 0.0460 (137/2977) 0 * * Os_TE_23208 Chr9 9475080 9463648 + RETROSAT2LTR 12796 0.7676 (2190/2853) 1 Intact Os_TE_23190 Os_TE_23190 Chr9 9463647 9475080 - RETROSAT2LTR 12796 0.7719 (2213/2867) 1 Intact Os_TE_23208 Os_TE_23188 Chr9 9463143 9463144 - RETROSAT2LTR 12796 0.0931 (276/2963) 0 * * Os_TE_23173 Chr9 9460286 9460285 - RETROSAT2LTR 12796 0.0084 (25/2994) 0 * * Os_TE_23168 Chr9 9457576 9457575 - SZ-40LTR 2465 0.0077 (22/2853) 0 * * Os_TE_23157 Chr9 9454857 9454858 + SPMLIKE 10989 0.0031 (9/2861) 0 * Os_TE_23156 Os_TE_23156 Chr9 9454855 9454854 - ORSgTETN00200001 10994 0.0080 (23/2863) 0 * Os_TE_23157 Os_TE_23155 Chr9 9454790 9454791 - RETRO2A_LTR 12895 0.0101 (28/2773) 0 * Os_TE_23154 Os_TE_23154 Chr9 9454786 9454785 + RETRO2A_LTR 12895 0.0101 (29/2873) 0 * Os_TE_23155 Os_TE_23145 Chr9 9454113 9454114 + ORSgTETNOOT01834 251 0.0404 (120/2973) 0 * * Os_TE_23140 Chr9 9452077 9452078 + RIRE2_LTR 11306 0.0004 (1/2669) 0 * Os_TE_23139 Os_TE_23139 Chr9 9452073 9452072 - RIRE2_LTR 11306 0.0004 (1/2714) 0 * Os_TE_23140 Os_TE_23138 Chr9 9451485 9451486 + RETRO1_LTR 8314 0.0071 (21/2977) 0 * Os_TE_23137 Os_TE_23137 Chr9 9451481 9451480 - RETRO1_LTR 8314 0.0073 (21/2859) 0 * Os_TE_23138 Os_TE_23135 Chr9 9446130 9446129 + ORSgTEMT01700513 151 0.0481 (144/2992) 0 * Os_TE_23134 Os_TE_23134 Chr9 9446127 9446128 - ORSgTEMT01700794 153 0.0474 (142/2993) 0 * Os_TE_23135 Os_TE_23133 Chr9 9446073 9446072 - ORSgTEMT02400246 177 0.0348 (104/2985) 0 * Os_TE_23132 Os_TE_23132 Chr9 9446072 9446073 - TYPEM 227 0.0342 (102/2985) 0 * Os_TE_23133 Os_TE_23127 Chr9 9442861 9442860 + ORSgTETNOOT00221 261 0.0462 (138/2990) 0 * * Os_TE_23116 Chr9 9438172 9438173 + ORSiTERTOOT00296 5553 0.0003 (1/2988) 0 * Os_TE_23115 Os_TE_23115 Chr9 9438168 9438167 - SC-3_LTR 5748 0.0003 (1/2988) 0 * Os_TE_23116 Os_TE_23114 Chr9 9437644 9437645 + SPMLIKE 10989 0.0767 (225/2934) 0 * Os_TE_23113 Os_TE_23113 Chr9 9437642 9437641 - ORSgTETN00200001 10994 0.0923 (273/2959) 0 * Os_TE_23114 Os_TE_23072 Chr9 9424059 9424060 + SC-8_LTR 4951 0.0003 (1/2993) 0 * Os_TE_23071 Os_TE_23071 Chr9 9424055 9424054 - SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_23072 Os_TE_23070 Chr9 9424004 9424003 + WUWU 113 0.0100 (30/2988) 0 * Os_TE_23069 Os_TE_23069 Chr9 9423958 9423959 + WUWU 113 0.0104 (31/2987) 0 * Os_TE_23070 Os_TE_23061 Chr9 9422042 9422043 + SC-8_LTR 4951 0.0003 (1/2984) 0 * Os_TE_23060 Os_TE_23060 Chr9 9422038 9422037 - SC-8_LTR 4951 0.0003 (1/2985) 0 * Os_TE_23061 Os_TE_23055 Chr9 9417325 9417205 - ORSgTEMT01701882 154 0.8973 (944/1052) 1 Intact * Os_TE_23050 Chr9 9417168 9417167 - ORSgTEMT01602413 239 0.0364 (96/2634) 0 * Os_TE_23049 Os_TE_23049 Chr9 9417165 9417166 + ORSgTEMT01601525 239 0.0738 (77/1043) 0 * Os_TE_23050 Os_TE_23040 Chr9 9416403 9416404 - ORSgTEMT01701882 154 0.0006 (1/1749) -1 * * Os_TE_23012 Chr9 9405566 9405565 - RETROSAT2LTR 12796 0.0277 (27/973) 0 * * Os_TE_23005 Chr9 9399725 9399726 - COPIA2-LTR_OS 6433 0.0844 (83/983) 0 * Os_TE_23004 Os_TE_23004 Chr9 9399721 9399720 + COPIA2-LTR_OS 6433 0.0815 (80/982) 0 * Os_TE_23005 Os_TE_22978 Chr9 9384631 9384632 - OSTE1 801 0.0013 (2/1558) 0 * * Os_TE_22972 Chr9 9382188 9381951 - ORSgTEMT01600639 228 0.2864 (825/2881) 1 Intact Os_TE_22970 Os_TE_22970 Chr9 9381951 9382188 - ORSgTEMT01601208 238 0.3062 (894/2920) 1 Intact Os_TE_22972 Os_TE_22968 Chr9 9380277 9380278 - SC-8_LTR 4951 0.0003 (1/2985) 0 * Os_TE_22967 Os_TE_22967 Chr9 9380273 9380272 + SC-8_LTR 4951 0.0003 (1/2980) 0 * Os_TE_22968 Os_TE_22943 Chr9 9374189 9374188 - ORSgTEMT02400179 221 0.0017 (5/2959) 0 * Os_TE_22942 Os_TE_22942 Chr9 9374187 9374188 - TYPEM 227 0.0017 (5/2958) 0 * Os_TE_22943 Os_TE_22923 Chr9 9370512 9370513 - RETRO2_LTR 12874 0.0338 (101/2991) 0 * Os_TE_22922 Os_TE_22922 Chr9 9370508 9370507 + RETRO2_LTR 12874 0.0344 (103/2990) 0 * Os_TE_22923 Os_TE_22918 Chr9 9366054 9366055 + OSTONOR1_LTR 6440 0.0027 (8/2951) 0 * Os_TE_22917 Os_TE_22917 Chr9 9366050 9366049 - OSTONOR1_LTR 6440 0.0023 (7/2995) 0 * Os_TE_22918 Os_TE_22905 Chr9 9362440 9362441 + ORSgTETNOOT00908 242 0.0167 (50/2989) 0 * * Os_TE_22900 Chr9 9357509 9357508 - STOWAWAY51_OS 246 0.0999 (298/2984) 0 * * Os_TE_22867 Chr9 9349865 9349864 - EnSpm-N1_OS 4256 0.0145 (43/2963) 0 * Os_TE_22866 Os_TE_22866 Chr9 9349861 9349862 + EnSpm-N1_OS 4256 0.0152 (45/2966) 0 * Os_TE_22867 Os_TE_22852 Chr9 9347887 9347888 + SZ-36LTR 5825 0.0081 (24/2974) 0 * * Os_TE_22828 Chr9 9335841 9324700 + SPMLIKE 10989 0.3318 (983/2963) 1 Intact Os_TE_22824 Os_TE_22824 Chr9 9324700 9335841 - ORSgTETN00200001 10994 0.3004 (884/2943) 1 Intact Os_TE_22828 Os_TE_22753 Chr9 9289468 9289467 + ENSPM5_OS 9581 0.0085 (10/1173) 0 * * Os_TE_22721 Chr9 9281875 9278385 - SEVERIN-2 1952 0.2754 (795/2887) 1 Intact Os_TE_22717 Os_TE_22717 Chr9 9278384 9281875 + SEVERIN-2 1952 0.2979 (880/2954) 1 Intact Os_TE_22721 Os_TE_22711 Chr9 9277552 9277553 + RIREX_LTR 8828 0.0003 (1/2991) 0 * Os_TE_22710 Os_TE_22710 Chr9 9277548 9277547 - RIREX_LTR 8828 0.0003 (1/2986) 0 * Os_TE_22711 Os_TE_22683 Chr9 9266874 9266875 - SC-3_LTR 5748 0.0004 (1/2588) 0 * * Os_TE_22651 Chr9 9253920 9253921 + COPI2_LTR 4733 0.0007 (2/2990) 0 * Os_TE_22650 Os_TE_22650 Chr9 9253916 9253915 - COPI2_LTR 4733 0.0007 (2/2993) 0 * Os_TE_22651 Os_TE_22647 Chr9 9250932 9250933 - SPMLIKE 10989 0.0050 (15/2992) 0 * Os_TE_22646 Os_TE_22646 Chr9 9250930 9250929 + SPMLIKE 10989 0.0060 (18/2993) 0 * Os_TE_22647 Os_TE_22641 Chr9 9249332 9249333 + COPI2_LTR 4733 0.0115 (34/2969) 0 * Os_TE_22640 Os_TE_22640 Chr9 9249328 9249327 - COPI2_LTR 4733 0.0104 (31/2978) 0 * Os_TE_22641 Os_TE_22639 Chr9 9248825 9248826 + ORSgTEMT01602637 232 0.5865 (1723/2938) 0 * Os_TE_22638 Os_TE_22638 Chr9 9248824 9248823 - ORSgTEMT01602055 238 0.5826 (1707/2930) 0 * Os_TE_22639 Os_TE_22631 Chr9 9247596 9247597 - OSTE14 885 0.0024 (7/2908) 0 * * Os_TE_22581 Chr9 9226908 9226907 - TRUNCATOR 2918 0.0017 (5/2978) 0 * Os_TE_22580 Os_TE_22580 Chr9 9226907 9226908 + TRUNCATOR 2918 0.0027 (8/2982) 0 * Os_TE_22581 Os_TE_22576 Chr9 9225125 9225126 - RETROSAT2LTRA 3112 0.0007 (2/2916) 0 * * Os_TE_22552 Chr9 9219735 9219736 - SZ-17_LTR 3387 0.4872 (1452/2980) 0 * Os_TE_22551 Os_TE_22551 Chr9 9219731 9219730 + SZ-17_LTR 3387 0.4432 (1248/2816) 0 * Os_TE_22552 Os_TE_22548 Chr9 9219094 9219095 + ORSiTERTOOT00027 10853 0.0073 (15/2045) 0 * Os_TE_22547 Os_TE_22547 Chr9 9219090 9219089 - RIRE3A_LTR 10580 0.0490 (28/572) 0 * Os_TE_22548 Os_TE_22531 Chr9 9202050 9202049 - ORSgTEMT02400246 177 0.0098 (29/2966) 0 * Os_TE_22530 Os_TE_22530 Chr9 9202049 9202050 - TYPEM 227 0.0104 (31/2968) 0 * Os_TE_22531 Os_TE_22525 Chr9 9199692 9199693 + ENSPM5_OS 9581 0.0050 (15/2983) 0 * Os_TE_22524 Os_TE_22524 Chr9 9199690 9199689 - ENSPM6_OS 9815 0.0054 (16/2977) 0 * Os_TE_22525 Os_TE_22512 Chr9 9193639 9193638 + SPMLIKE 10989 0.0010 (3/2989) 0 * * Os_TE_22464 Chr9 9169493 9169492 + RIREX_LTR 8828 0.0003 (1/2860) 0 * * Os_TE_22456 Chr9 9166797 9166798 + RIRE2_LTR 11306 0.0062 (18/2887) 0 * * Os_TE_22453 Chr9 9165096 9165718 - ENSPM3_OS 10837 0.2791 (788/2823) 1 Intact * Os_TE_22430 Chr9 9150783 9150782 + OSTE21 1271 0.0061 (18/2932) 0 * Os_TE_22429 Os_TE_22429 Chr9 9150775 9150776 + OSTE21 1271 0.0061 (18/2929) 0 * Os_TE_22430 Os_TE_22397 Chr9 9137706 9137705 + AMYLTP 383 0.5512 (1637/2970) 0 * * Os_TE_22311 Chr9 9101523 9101522 - TYPEM 227 0.1184 (153/1292) 0 * Os_TE_22310 Os_TE_22310 Chr9 9101521 9101522 - ORSgTEMT02400248 224 0.1243 (161/1295) 0 * Os_TE_22311 Os_TE_22306 Chr9 9099329 9099330 - RIREX_LTR 8828 0.0130 (17/1311) 0 * Os_TE_22305 Os_TE_22305 Chr9 9099325 9099324 - RIREX_LTR 8828 0.0114 (15/1312) 0 * Os_TE_22306 Os_TE_22303 Chr9 9097685 9097323 + ORSgTEMT00300069 394 0.6222 (1260/2025) 1 Intact * Os_TE_22298 Chr9 9096303 9096304 - TYPEM 227 0.0008 (1/1296) 0 * Os_TE_22297 Os_TE_22297 Chr9 9096302 9096301 - ORSgTEMT02400179 221 0.0008 (1/1300) 0 * Os_TE_22298 Os_TE_22261 Chr9 9078922 9078923 + RETRO1_LTR 8314 0.0162 (20/1237) 0 * * Os_TE_22195 Chr9 9051105 9051106 + RIRE3_LTR 12054 0.0060 (18/2977) 0 * Os_TE_22194 Os_TE_22194 Chr9 9051101 9051100 - RIRE3_LTR 12054 0.0067 (20/2975) 0 * Os_TE_22195 Os_TE_22180 Chr9 9048055 9048056 - MPING 430 0.5369 (1586/2954) 0 * Os_TE_22179 Os_TE_22179 Chr9 9048047 9048046 + ORSgTETNOOT01219 231 0.5280 (1519/2877) 0 * Os_TE_22180 Os_TE_22178 Chr9 9047679 9047680 - RIRE2_LTR 11306 0.0065 (19/2945) 0 * Os_TE_22177 Os_TE_22177 Chr9 9047675 9047674 - ORSgTERT00201216 11284 0.0067 (20/2975) 0 * Os_TE_22178 Os_TE_22160 Chr9 9043024 9042252 + MUDRN1_OS 764 0.3246 (954/2939) 1 Intact * Os_TE_22126 Chr9 9023635 9023636 + COPIA2-LTR_OS 6433 0.0245 (73/2978) 0 * Os_TE_22125 Os_TE_22125 Chr9 9023631 9023630 - COPIA2-LTR_OS 6433 0.0249 (74/2975) 0 * Os_TE_22126 Os_TE_22103 Chr9 9016217 9016218 - ORSgTETN00200001 10994 0.0660 (72/1091) 0 * Os_TE_22102 Os_TE_22102 Chr9 9016215 9016214 + SPMLIKE 10989 0.0247 (71/2872) 0 * Os_TE_22103 Os_TE_22079 Chr9 9007738 9007739 - COPI2_LTR 4733 0.0011 (3/2733) 0 * Os_TE_22078 Os_TE_22078 Chr9 9007734 9007733 + COPI2_LTR 4733 0.0011 (3/2733) 0 * Os_TE_22079 Os_TE_22075 Chr9 9007450 9007449 + CPSC5_LTR 5141 0.7432 (2029/2730) 0 * * Os_TE_22071 Chr9 9005091 9005090 - ENSPM6_OS 9815 0.0004 (1/2740) 0 * * Os_TE_22064 Chr9 9004375 9004376 + ORSgTEMT01602181 239 0.0066 (18/2732) 0 * * Os_TE_22063 Chr9 9004289 9004290 - OSTONOR1_LTR 6440 0.0098 (27/2751) 0 * * Os_TE_22026 Chr9 8990611 8990612 + RIREX_LTR 8828 0.0010 (3/2942) 0 * * Os_TE_22023 Chr9 8989413 8989414 - COPI2_LTR 4733 0.0075 (22/2947) 0 * Os_TE_22022 Os_TE_22022 Chr9 8989409 8989408 + COPI2_LTR 4733 0.0071 (21/2941) 0 * Os_TE_22023 Os_TE_22006 Chr9 8982091 8982092 + OSTONOR1_LTR 6440 0.0077 (23/2988) 0 * Os_TE_22005 Os_TE_22005 Chr9 8982087 8982086 - OSTONOR1_LTR 6440 0.0080 (24/2989) 0 * Os_TE_22006 Os_TE_21988 Chr9 8976508 8976509 - EnSpm-13_OS 11171 0.0030 (9/2953) 0 * Os_TE_21987 Os_TE_21987 Chr9 8976506 8976505 + EnSpm-13_OS 11171 0.0027 (8/2935) 0 * Os_TE_21988 Os_TE_21970 Chr9 8968983 8968984 + COPIA2-LTR_OS 6433 0.0003 (1/2973) 0 * Os_TE_21969 Os_TE_21969 Chr9 8968979 8968978 - COPIA2-LTR_OS 6433 0.0003 (1/2881) 0 * Os_TE_21970 Os_TE_21962 Chr9 8967617 8967618 - SPMLIKE 10989 0.0018 (5/2856) 0 * Os_TE_21961 Os_TE_21961 Chr9 8967615 8967614 + SPMLIKE 10989 0.0017 (5/2859) 0 * Os_TE_21962 Os_TE_21949 Chr9 8959544 8959543 - OSTE33 1012 0.0004 (1/2730) 0 * * Os_TE_21911 Chr9 8939748 8939747 + SPMLIKE 10989 0.0218 (40/1837) 0 * * Os_TE_21908 Chr9 8938575 8938576 - GYPSY-A_LTR 8951 0.0028 (5/1796) 0 * Os_TE_21907 Os_TE_21907 Chr9 8938571 8938570 + GYPSY-A_LTR 8951 0.0022 (4/1782) 0 * Os_TE_21908 Os_TE_21901 Chr9 8935718 8935719 - TRUNCATOR2_LTR 2904 0.0108 (19/1767) 0 * * Os_TE_21894 Chr9 8932646 8932645 + SEVERIN-2 1952 0.0641 (115/1793) 0 * * Os_TE_21892 Chr9 8930314 8930315 + COPIA2-LTR_OS 6433 0.0005 (1/1821) 0 * Os_TE_21891 Os_TE_21891 Chr9 8930310 8930309 - COPIA2-LTR_OS 6433 0.0005 (1/1823) 0 * Os_TE_21892 Os_TE_21862 Chr9 8920329 8920328 - ENSPM4_OS 11610 0.0133 (24/1809) 0 * * Os_TE_21860 Chr9 8917774 8917773 + STOWAWAY51_OS 246 0.0098 (18/1838) 0 * Os_TE_21859 Os_TE_21859 Chr9 8917768 8917769 - STOWAWAY51_OS 246 0.0098 (18/1831) 0 * Os_TE_21860 Os_TE_21858 Chr9 8917607 8917608 + COPIA2-LTR_OS 6433 0.0006 (1/1805) 0 * Os_TE_21857 Os_TE_21857 Chr9 8917603 8917602 - COPIA2-LTR_OS 6433 0.0006 (1/1807) 0 * Os_TE_21858 Os_TE_21757 Chr9 8878073 8878074 - SZ-43LTR 4039 0.0107 (31/2902) 0 * * Os_TE_21756 Chr9 8877893 8877892 - ORSgTEMT00100296 161 0.0004 (1/2550) 0 * * Os_TE_21753 Chr9 8877558 8877559 + OsSN3 183 0.0011 (2/1850) 0 * * Os_TE_21749 Chr9 8872741 8872541 + COWARD 200 0.4854 (1410/2905) 1 Intact Os_TE_21748 Os_TE_21748 Chr9 8872541 8872736 - COWARD-3 221 0.4924 (1421/2886) 1 Intact Os_TE_21749 Os_TE_21747 Chr9 8872336 8872335 + ORSgTEMT01601591 242 0.0003 (1/2932) 0 * * Os_TE_21743 Chr9 8871680 8871681 - RETROSAT2LTR 12796 0.0397 (30/756) -1 * * Os_TE_21694 Chr9 8851843 8851844 - COPIA2-LTR_OS 6433 0.0013 (4/2994) 0 * Os_TE_21693 Os_TE_21693 Chr9 8851839 8851838 + COPIA2-LTR_OS 6433 0.0013 (4/2993) 0 * Os_TE_21694 Os_TE_21650 Chr9 8810385 8810249 + TELIA 141 0.6628 (1486/2242) 1 Intact * Os_TE_21645 Chr9 8808378 8808377 - RIRE3A_LTR 10580 0.0063 (9/1434) 0 * * Os_TE_21633 Chr9 8791903 8791904 + ORSiTERTOOT00027 10853 0.0060 (9/1508) 0 * * Os_TE_21614 Chr9 8784804 8784805 - RETROFIT3_LTR 5391 0.0213 (32/1503) 0 * Os_TE_21613 Os_TE_21613 Chr9 8784800 8784799 + RETROFIT3_LTR 5391 0.0213 (32/1501) 0 * Os_TE_21614 Os_TE_21604 Chr9 8777435 8781685 + SZ-48LTR 3632 0.4995 (1469/2941) 1 Intact * Os_TE_21595 Chr9 8773935 8766317 + RIREX_LTR 8828 0.5473 (816/1491) 1 Intact Os_TE_21592 Os_TE_21592 Chr9 8766317 8773935 - RIREX_LTR 8828 0.5519 (835/1513) 1 Intact Os_TE_21595 Os_TE_21573 Chr9 8761896 8762126 - ORSgTETNOOT00346 233 0.4802 (1418/2953) 1 Intact * Os_TE_21572 Chr9 8761256 8761257 - COPIA2-LTR_OS 6433 0.0034 (10/2973) 0 * Os_TE_21571 Os_TE_21571 Chr9 8761252 8761251 + COPIA2-LTR_OS 6433 0.0030 (9/2980) 0 * Os_TE_21572 Os_TE_21535 Chr9 8748503 8748504 + COPIA2-LTR_OS 6433 0.0004 (1/2727) 0 * Os_TE_21534 Os_TE_21534 Chr9 8748499 8748498 - COPIA2-LTR_OS 6433 0.0004 (1/2474) 0 * Os_TE_21535 Os_TE_21510 Chr9 8733492 8733493 + MPING 430 0.0003 (1/2964) 0 * Os_TE_21509 Os_TE_21509 Chr9 8733490 8733489 - MPING 430 0.0003 (1/2968) 0 * Os_TE_21510 Os_TE_21508 Chr9 8733444 8733445 - COPIA2-LTR_OS 6433 0.0141 (33/2346) 0 * Os_TE_21507 Os_TE_21507 Chr9 8733440 8733439 + COPIA2-LTR_OS 6433 0.0114 (34/2988) 0 * Os_TE_21508 Os_TE_21501 Chr9 8730876 8730875 + CACTA-B 1103 0.0218 (65/2985) 0 * * Os_TE_21478 Chr9 8712063 8712064 - SC-3_LTR 5748 0.0003 (1/2994) 0 * Os_TE_21477 Os_TE_21477 Chr9 8712059 8712058 + ORSiTERTOOT00296 5553 0.0003 (1/2994) 0 * Os_TE_21478 Os_TE_21471 Chr9 8707854 8707855 + NDNA1TNA_OS 334 0.0087 (25/2881) 0 * Os_TE_21470 Os_TE_21470 Chr9 8707853 8707852 - NDNA1TNA_OS 334 0.0092 (25/2711) -1 * Os_TE_21471 Os_TE_21467 Chr9 8707064 8706852 + ORSgTEMT01601122 212 0.3056 (904/2958) 1 Intact * Os_TE_21462 Chr9 8706656 8706799 + ORSgTEMT00500002 133 0.2968 (868/2925) 1 Intact * Os_TE_21456 Chr9 8704944 8704833 - ORSiTEMT00200004 104 0.2991 (882/2949) 1 Intact * Os_TE_21450 Chr9 8704768 8704767 - ORMOSIA 482 0.7013 (2026/2889) 0 * * Os_TE_21437 Chr9 8700269 8698759 + SZ-19LTR 1513 0.3326 (938/2820) 1 Intact * Os_TE_21433 Chr9 8698731 8698732 + ORSgTEMT01601122 212 0.6187 (1496/2418) 0 * * Os_TE_21430 Chr9 8697554 8697555 + STOWAWAY18_OS 216 0.6852 (1909/2786) 0 * * Os_TE_21427 Chr9 8691277 8691278 + COPIA2-LTR_OS 6433 0.0027 (8/2997) 0 * Os_TE_21426 Os_TE_21426 Chr9 8691273 8691272 - COPIA2-LTR_OS 6433 0.0033 (10/2997) 0 * Os_TE_21427 Os_TE_21337 Chr9 8618098 8618097 - COPI2_LTR 4733 0.0004 (1/2763) 0 * * Os_TE_21330 Chr9 8615386 8615387 - TYPEM 227 0.0074 (22/2958) 0 * * Os_TE_21305 Chr9 8608260 8608261 - SC-3_LTR 5748 0.0003 (1/2990) 0 * * Os_TE_21272 Chr9 8593697 8593696 - ORSgTEMT00600524 364 0.4149 (1102/2656) 0 * Os_TE_21271 Os_TE_21271 Chr9 8593689 8593690 + ORSgTEMT00600272 361 0.4447 (1218/2739) 0 * Os_TE_21272 Os_TE_21260 Chr9 8583662 8583661 + ORSgTEMT00101457 316 0.0014 (4/2919) 0 * * Os_TE_21247 Chr9 8577847 8572377 - SC-3_LTR 5748 0.0626 (187/2986) 1 Intact Os_TE_21246 Os_TE_21246 Chr9 8572145 8577847 + ORSiTERTOOT00296 5553 0.0637 (190/2984) 1 Intact Os_TE_21247 Os_TE_21244 Chr9 8571981 8571982 + SC-4_LTR 5218 0.0003 (1/2997) 0 * Os_TE_21243 Os_TE_21243 Chr9 8571977 8571976 - SC-4_LTR 5218 0.0003 (1/2993) 0 * Os_TE_21244 Os_TE_21242 Chr9 8570593 8570594 - COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_21241 Os_TE_21241 Chr9 8570589 8570588 + COPI2_LTR 4733 0.0003 (1/2993) 0 * Os_TE_21242 Os_TE_21239 Chr9 8568800 8568801 - TYPEM 227 0.0161 (48/2990) 0 * Os_TE_21238 Os_TE_21238 Chr9 8568799 8568798 - ORSgTEMT02400179 221 0.0161 (48/2990) 0 * Os_TE_21239 Os_TE_21237 Chr9 8568538 8568537 - ORSgTEMT01400038 210 0.0690 (206/2987) 0 * * Os_TE_21235 Chr9 8568281 8568282 + ORSgTEMT01600288 233 0.0017 (5/2968) 0 * Os_TE_21234 Os_TE_21234 Chr9 8568277 8568276 - ORSgTEMT01600768 234 0.0017 (5/2976) 0 * Os_TE_21235 Os_TE_21233 Chr9 8568198 8568197 + TREP220 109 0.0652 (193/2960) 0 * Os_TE_21232 Os_TE_21232 Chr9 8568195 8568196 + TREP220 109 0.0662 (196/2960) 0 * Os_TE_21233 Os_TE_21227 Chr9 8567698 8567699 + COPIA3-LTR_OS 5061 0.0004 (1/2788) 0 * * Os_TE_21226 Chr9 8567688 8567689 + COPIA3-LTR_OS 5061 0.0715 (212/2966) 0 * Os_TE_21225 Os_TE_21225 Chr9 8567684 8567683 - COPIA3-LTR_OS 5061 0.0631 (186/2950) 0 * Os_TE_21226 Os_TE_21224 Chr9 8567227 8567226 - ORSgTEMT03000049 380 0.0015 (1/650) -1 * * Os_TE_21220 Chr9 8565193 8565194 + TOS17LTR 138 0.3509 (990/2821) 0 * Os_TE_21219 Os_TE_21219 Chr9 8565189 8565188 - TOS17LTR 138 0.3614 (1026/2839) 0 * Os_TE_21220 Os_TE_21212 Chr9 8559744 8559743 - ENSPM4_OS 11610 0.0117 (33/2824) 0 * * Os_TE_21210 Chr9 8559016 8559015 - MERMITED 1572 0.0630 (187/2968) 0 * * Os_TE_21162 Chr9 8535592 8535593 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * * Os_TE_21119 Chr9 8521853 8521854 - COPIA2-LTR_OS 6433 0.0005 (1/1824) 0 * * Os_TE_21118 Chr9 8521808 8521809 - SZ-22_LTR 4403 0.0011 (2/1829) 0 * Os_TE_21117 Os_TE_21117 Chr9 8521804 8521803 + ORSiTERTOOT00226 792 0.0011 (2/1827) 0 * Os_TE_21118 Os_TE_21114 Chr9 8520653 8520654 - RETRO2_LTR 12874 0.0488 (146/2994) 0 * Os_TE_21113 Os_TE_21113 Chr9 8520649 8520648 + RETRO2A_LTR 12895 0.0554 (143/2579) 0 * Os_TE_21114 Os_TE_21100 Chr9 8516536 8516535 - TYPEM 227 0.0003 (1/2956) 0 * Os_TE_21099 Os_TE_21099 Chr9 8516535 8516536 - ORSgTEMT02400246 177 0.0003 (1/2983) 0 * Os_TE_21100 Os_TE_21017 Chr9 8421970 8421446 - CLOUD-4 520 0.8936 (1008/1128) 1 Intact * Os_TE_20909 Chr9 8347296 8347297 + MPING 430 0.0010 (1/1031) 0 * Os_TE_20908 Os_TE_20908 Chr9 8347294 8347293 - MPING 430 0.0010 (1/1035) 0 * Os_TE_20909 Os_TE_20831 Chr9 8307753 8307754 - ORSiTERTOOT00301 9654 0.0895 (45/503) -1 * * Os_TE_20804 Chr9 8290898 8290519 - ORSgTEMT01602413 239 0.8808 (1012/1149) 1 Intact * Os_TE_20787 Chr9 8286482 8289454 - TRUNCATOR 2918 0.8206 (942/1148) 1 Intact * Os_TE_20784 Chr9 8285366 8285367 - TNR2A 152 0.0010 (1/1052) 0 * * Os_TE_20761 Chr9 8273218 8273219 + ORSgTEMT04600010 284 0.0756 (81/1072) 0 * * Os_TE_20663 Chr9 8221411 8221514 + SZ-58LTR 114 0.8386 (1044/1245) 1 Intact * Os_TE_20643 Chr9 8208919 8208918 - ORSgTERT00201216 11284 0.0020 (6/2939) 0 * * Os_TE_20606 Chr9 8196552 8196553 - RETRO2A_LTR 12895 0.0020 (6/2985) 0 * Os_TE_20605 Os_TE_20605 Chr9 8196548 8196547 + RETRO1_LTR 8314 0.0020 (6/2980) 0 * Os_TE_20606 Os_TE_20590 Chr9 8189612 8189613 + SETARIA2 1142 0.0102 (29/2830) 0 * Os_TE_20589 Os_TE_20589 Chr9 8189608 8189607 + SETARIA2 1142 0.0092 (26/2826) 0 * Os_TE_20590 Os_TE_20562 Chr9 8180534 8180533 + ORSiTERTOOT00074 4935 0.0010 (3/2935) 0 * * Os_TE_20558 Chr9 8179603 8179604 + RIRE2_LTR 11306 0.0330 (98/2966) 0 * Os_TE_20557 Os_TE_20557 Chr9 8179599 8179598 - RIRE2_LTR 11306 0.0324 (96/2966) 0 * Os_TE_20558 Os_TE_20556 Chr9 8178815 8178814 - RETRO2_LTR 12874 0.0003 (1/2978) 0 * * Os_TE_20554 Chr9 8178322 8178323 - ORSgTERT00201216 11284 0.0020 (6/2974) 0 * Os_TE_20553 Os_TE_20553 Chr9 8178318 8178317 - RIRE2_LTR 11306 0.0020 (6/2976) 0 * Os_TE_20554 Os_TE_20546 Chr9 8172965 8172966 + NDNA1TNA_OS 334 0.0013 (4/2987) 0 * Os_TE_20545 Os_TE_20545 Chr9 8172963 8172962 - NDNA1TNA_OS 334 0.0013 (4/2990) 0 * Os_TE_20546 Os_TE_20544 Chr9 8172949 8172950 + INDITTO 263 0.0003 (1/2988) 0 * Os_TE_20543 Os_TE_20543 Chr9 8172947 8172946 - INDITTO 263 0.0003 (1/2984) 0 * Os_TE_20544 Os_TE_20523 Chr9 8164366 8164365 - ORSgTETN00200001 10994 0.0143 (42/2942) 0 * * Os_TE_20499 Chr9 8160128 8160127 + ORSiTERTOOT00174 2237 0.0003 (1/2973) 0 * * Os_TE_20432 Chr9 8134235 8134234 + ENSPM4_OS 11610 0.0110 (33/2988) 0 * * Os_TE_20431 Chr9 8134185 8134186 - RIREX_LTR 8828 0.0003 (1/2983) 0 * Os_TE_20430 Os_TE_20430 Chr9 8134181 8134180 + RIREX_LTR 8828 0.0003 (1/2988) 0 * Os_TE_20431 Os_TE_20397 Chr9 8126539 8126540 - ORSgTETNOOT00505 201 0.0010 (3/2990) 0 * * Os_TE_20378 Chr9 8112252 8112251 - ORSgTEMT00100799 337 0.0098 (27/2762) 0 * * Os_TE_20374 Chr9 8111700 8111699 - TYPEM 227 0.0083 (23/2784) 0 * Os_TE_20373 Os_TE_20373 Chr9 8111699 8111700 - ORSgTEMT02400246 177 0.0086 (24/2788) 0 * Os_TE_20374 Os_TE_20370 Chr9 8111401 8111400 + COPIA2-LTR_OS 6433 0.0004 (1/2808) 0 * * Os_TE_20352 Chr9 8107255 8107254 - SZ-9LTR 965 0.0010 (3/2979) 0 * * Os_TE_20334 Chr9 8100622 8100623 - ORSiTERT00100062 5674 0.0003 (1/2950) 0 * Os_TE_20333 Os_TE_20333 Chr9 8100618 8100617 + OSTONOR1_LTR 6440 0.0003 (1/2901) 0 * Os_TE_20334 Os_TE_20323 Chr9 8098576 8098575 - OSMAR1 5265 0.0017 (5/2988) 0 * Os_TE_20322 Os_TE_20322 Chr9 8098573 8098574 + OSMAR1 5265 0.0010 (3/2974) 0 * Os_TE_20323 Os_TE_20320 Chr9 8098232 8098233 - ORSgTETN00200001 10994 0.2152 (636/2956) 0 * Os_TE_20319 Os_TE_20319 Chr9 8098230 8098229 + SPMLIKE 10989 0.2145 (635/2960) 0 * Os_TE_20320 Os_TE_20318 Chr9 8097503 8097504 + ORSgTETNOOT00908 242 0.0013 (4/2997) 0 * Os_TE_20317 Os_TE_20317 Chr9 8097501 8097500 + ORSgTETNOOT00908 242 0.0013 (4/2994) 0 * Os_TE_20318 Os_TE_20249 Chr9 8070032 8070033 - ORSgTETN00200001 10994 0.0040 (12/2998) 0 * * Os_TE_20240 Chr9 8069137 8069136 + RIRE3_LTR 12054 0.0171 (50/2924) 0 * * Os_TE_20236 Chr9 8067317 8067318 + CPSC2_LTR 5202 0.0003 (1/2991) 0 * Os_TE_20235 Os_TE_20235 Chr9 8067313 8067312 - CPSC2_LTR 5202 0.0003 (1/2987) 0 * Os_TE_20236 Os_TE_20202 Chr9 8051364 8051365 + ORSiCMCM00100019 2717 0.0104 (31/2967) 0 * * Os_TE_20170 Chr9 8041983 8041982 - RETROSAT2LTR 12796 0.0003 (1/2982) 0 * * Os_TE_20125 Chr9 8031962 8031961 + ORSgTEMT00900453 262 0.0009 (1/1161) 0 * * Os_TE_20055 Chr9 7995217 7995218 + RETRO2_LTR 12874 0.3455 (988/2860) 0 * Os_TE_20054 Os_TE_20054 Chr9 7995213 7995212 - RETRO2_LTR 12874 0.3774 (1119/2965) 0 * Os_TE_20055 Os_TE_20039 Chr9 7992106 7980828 + SPMLIKE 10989 0.1428 (414/2899) 1 Intact Os_TE_20033 Os_TE_20033 Chr9 7980828 7992107 - ORSgTETN00200001 10994 0.1223 (348/2846) 1 Intact Os_TE_20039 Os_TE_20032 Chr9 7980723 7980722 + MUDR_N7_OS 1283 0.0298 (87/2915) 0 * * Os_TE_20007 Chr9 7972977 7972978 + COPIA2-LTR_OS 6433 0.0003 (1/2946) 0 * Os_TE_20006 Os_TE_20006 Chr9 7972973 7972972 - COPIA2-LTR_OS 6433 0.0003 (1/2946) 0 * Os_TE_20007 Os_TE_19971 Chr9 7956001 7956002 + COPI2_LTR 4733 0.0014 (4/2824) 0 * * Os_TE_19959 Chr9 7949629 7949630 - SEVERIN-2 1952 0.0868 (252/2904) 0 * * Os_TE_19957 Chr9 7948103 7948104 + OSTE18 129 0.1426 (422/2960) 0 * * Os_TE_19956 Chr9 7947263 7947262 + ORSgTEMT00600272 361 0.0078 (23/2955) 0 * * Os_TE_19925 Chr9 7931949 7931950 - SC-8_LTR 4951 0.0003 (1/2990) 0 * * Os_TE_19923 Chr9 7931667 7931668 + ORSiTERTOOT00296 5553 0.0010 (3/2982) 0 * Os_TE_19922 Os_TE_19922 Chr9 7931663 7931662 - SC-3_LTR 5748 0.0010 (3/2978) 0 * Os_TE_19923 Os_TE_19915 Chr9 7931370 7931371 + ORSgTEMT00900467 235 0.0003 (1/2964) 0 * * Os_TE_19906 Chr9 7926305 7926306 + ORSiTERTOOT00381 4988 0.0003 (1/2992) 0 * Os_TE_19905 Os_TE_19905 Chr9 7926301 7926300 - SC-8_LTR 4951 0.0003 (1/2989) 0 * Os_TE_19906 Os_TE_19889 Chr9 7914859 7914860 - SC-3_LTR 5748 0.0003 (1/2996) 0 * Os_TE_19888 Os_TE_19888 Chr9 7914855 7914854 + ORSiTERTOOT00296 5553 0.0003 (1/2995) 0 * Os_TE_19889 Os_TE_19860 Chr9 7906618 7906619 + RIREX_LTR 8828 0.0003 (1/2924) 0 * * Os_TE_19859 Chr9 7906279 7906278 - ENSPM4_OS 11610 0.1066 (313/2936) 0 * * Os_TE_19831 Chr9 7902113 7902114 + ORSiTERTOOT00381 4988 0.0003 (1/2978) 0 * Os_TE_19830 Os_TE_19830 Chr9 7902109 7902108 - SC-8_LTR 4951 0.0003 (1/2975) 0 * Os_TE_19831 Os_TE_19813 Chr9 7893507 7893508 + ORSiTERTOOT00296 5553 0.0003 (1/2991) 0 * Os_TE_19812 Os_TE_19812 Chr9 7893503 7893502 - SC-3_LTR 5748 0.0003 (1/2993) 0 * Os_TE_19813 Os_TE_19809 Chr9 7892770 7892771 - ORSgTEMT02000041 194 0.0027 (8/2971) 0 * * Os_TE_19808 Chr9 7892122 7892123 - SC-3_LTR 5748 0.0007 (2/2995) 0 * Os_TE_19807 Os_TE_19807 Chr9 7892118 7892117 + ORSiTERTOOT00296 5553 0.0007 (2/2993) 0 * Os_TE_19808 Os_TE_19774 Chr9 7870326 7870327 - ORSgTEMT01702177 127 0.1454 (431/2965) 0 * * Os_TE_19773 Chr9 7870311 7870312 + ORSgTEMT01700820 150 0.0030 (9/2974) 0 * * Os_TE_19770 Chr9 7868762 7868763 + ORSgTETNOOT01834 251 0.1443 (427/2960) 0 * Os_TE_19769 Os_TE_19769 Chr9 7868760 7868759 - ORSgTETNOOT00754 253 0.1486 (442/2975) 0 * Os_TE_19770 Os_TE_19766 Chr9 7868010 7868011 - COPI2_LTR 4733 0.0003 (1/2973) 0 * Os_TE_19765 Os_TE_19765 Chr9 7868006 7868005 + COPI2_LTR 4733 0.0003 (1/2972) 0 * Os_TE_19766 Os_TE_19764 Chr9 7867968 7867749 - ORSgTEMT00900741 219 0.7460 (2226/2984) 1 Intact * Os_TE_19758 Chr9 7867594 7867593 - ORSgTEMT02900061 318 0.2681 (801/2988) 0 * Os_TE_19757 Os_TE_19757 Chr9 7867589 7867590 - STOWAWAY12_OS 312 0.2674 (797/2981) 0 * Os_TE_19758 Os_TE_19755 Chr9 7867507 7867506 - COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * * Os_TE_19735 Chr9 7854483 7854484 - SZ-35LTR 3853 0.2729 (806/2953) 0 * Os_TE_19734 Os_TE_19734 Chr9 7854479 7854478 + RETROSAT4_LTR 13504 0.2561 (740/2890) 0 * Os_TE_19735 Os_TE_19731 Chr9 7853836 7853837 - ORSgTETN00200001 10994 0.0020 (6/2988) 0 * Os_TE_19730 Os_TE_19730 Chr9 7853834 7853833 + SPMLIKE 10989 0.0020 (6/2990) 0 * Os_TE_19731 Os_TE_19712 Chr9 7847206 7847207 + ORSiCMCM00100017 5674 0.0037 (10/2728) 0 * * Os_TE_19710 Chr9 7846839 7846840 + MERMITE-18 1263 0.0015 (4/2669) 0 * * Os_TE_19708 Chr9 7846761 7846762 + ORSiTERTOOT00027 10853 0.0107 (29/2710) 0 * Os_TE_19707 Os_TE_19707 Chr9 7846757 7846756 - Cassandra_OS-LTR 764 0.0107 (29/2713) 0 * Os_TE_19708 Os_TE_19679 Chr9 7842641 7842642 + ORSgTERTOOT00009 12852 0.0058 (17/2946) 0 * * Os_TE_19631 Chr9 7828194 7828195 + ENSPM4_OS 11610 0.2549 (760/2982) 0 * * Os_TE_19624 Chr9 7826491 7827497 + RETRO2_LTR 12874 0.1618 (471/2911) 1 Solo_LTR * Os_TE_19603 Chr9 7815390 7818630 - RIRE3A_LTR 10580 0.0659 (196/2973) 1 Solo_LTR * Os_TE_19594 Chr9 7803087 7814292 - ORSgTETN00200001 10994 0.1535 (454/2957) 1 Intact * Os_TE_19580 Chr9 7800736 7800735 + TRUNCATOR2_LTR 2904 0.0017 (5/2973) 0 * * Os_TE_19571 Chr9 7794464 7794465 + ORSgTEMT01400031 216 0.0014 (4/2944) 0 * * Os_TE_19558 Chr9 7788720 7788719 - ORSgTEMT01602413 239 0.0007 (2/2957) 0 * Os_TE_19557 Os_TE_19557 Chr9 7788717 7788718 + ORSgTEMT01601525 239 0.0007 (2/2963) 0 * Os_TE_19558 Os_TE_19545 Chr9 7786446 7786445 + ENSPM4_OS 11610 0.0007 (2/2760) 0 * * Os_TE_19542 Chr9 7785367 7785368 + AMYLTP 383 0.0245 (64/2610) -1 * Os_TE_19541 Os_TE_19541 Chr9 7785359 7785358 - AMYLTP 383 0.0405 (84/2076) -1 * Os_TE_19542 Os_TE_19484 Chr9 7773674 7773675 + RETRO2_LTR 12874 0.0153 (36/2350) 0 * Os_TE_19483 Os_TE_19483 Chr9 7773670 7773669 - RETRO2_LTR 12874 0.0149 (35/2352) 0 * Os_TE_19484 Os_TE_19425 Chr9 7754120 7754119 + RIREX_LTR 8828 0.0020 (6/2989) 0 * * Os_TE_19424 Chr9 7753866 7753867 - TRUNCATOR2_LTR 2904 0.0060 (18/2990) 0 * Os_TE_19423 Os_TE_19423 Chr9 7753862 7753861 + ORSiCMCM00100019 2717 0.0050 (15/2992) 0 * Os_TE_19424 Os_TE_19419 Chr9 7753238 7753237 + RIREX_LTR 8828 0.0003 (1/2982) 0 * * Os_TE_19417 Chr9 7752511 7752510 + SPMLIKE 10989 0.0007 (2/2973) 0 * * Os_TE_19408 Chr9 7751858 7751859 + MERMITE18D 1491 0.0021 (5/2382) 0 * * Os_TE_19379 Chr9 7749132 7749131 + ORSiTERTOOT00291 11421 0.5332 (1574/2952) 0 * * Os_TE_19375 Chr9 7748551 7748552 + RIREX_LTR 8828 0.0004 (1/2393) 0 * Os_TE_19374 Os_TE_19374 Chr9 7748547 7748546 - RIREX_LTR 8828 0.0004 (1/2612) 0 * Os_TE_19375 Os_TE_19369 Chr9 7744723 7744724 - ORSgTETN00200001 10994 0.0379 (43/1136) 0 * * Os_TE_19365 Chr9 7744115 7744114 + RPO_OS 1983 0.4801 (1012/2108) 0 * * Os_TE_19362 Chr9 7742183 7742184 - TRUNCATOR 2918 0.0007 (2/2714) 0 * * Os_TE_19361 Chr9 7742136 7741931 - ORSgTEMT01602643 234 0.3715 (1015/2732) 1 Intact * Os_TE_19359 Chr9 7741163 7741162 + SEVERIN-2 1952 0.0007 (2/2975) 0 * * Os_TE_19356 Chr9 7740822 7735959 - SEVERIN-2 1952 0.3429 (977/2849) 1 Intact * Os_TE_19337 Chr9 7734793 7734792 + ORSiTERTOOT00112 4608 0.6453 (1890/2929) 0 * * Os_TE_19335 Chr9 7734087 7728615 + ORSiCMCM00100013 9728 0.8883 (1089/1226) 1 Intact Os_TE_19315 Os_TE_19315 Chr9 7728615 7734087 + SZ-38 8643 0.8899 (1107/1244) 1 Intact Os_TE_19335 Os_TE_19278 Chr9 7705063 7704821 + ORSgTEMT01400009 212 0.8902 (1038/1166) 1 Intact Os_TE_19275 Os_TE_19275 Chr9 7704819 7705028 + ORSgTEMT01400032 215 0.8925 (1063/1191) 1 Intact Os_TE_19278 Os_TE_19274 Chr9 7704646 7704509 + ORSgTETNOOT02309 137 0.8861 (1058/1194) 1 Intact Os_TE_19272 Os_TE_19272 Chr9 7704506 7704642 + ORSgTEMT00500852 140 0.8881 (1079/1215) 1 Intact Os_TE_19274 Os_TE_19267 Chr9 7703188 7718881 - COPIA3-LTR_OS 5061 0.8958 (1057/1180) 1 Intact * Os_TE_19246 Chr9 7698103 7698337 - STOWAWAY51_OS 246 0.7131 (1248/1750) 1 Intact * Os_TE_19222 Chr9 7685082 7684852 + STOWAWAY43_OS 233 0.7901 (1216/1539) 1 Intact * Os_TE_19195 Chr9 7668577 7668578 - COPIA2-LTR_OS 6433 0.0112 (14/1245) 0 * Os_TE_19194 Os_TE_19194 Chr9 7668573 7668572 + COPIA2-LTR_OS 6433 0.0105 (13/1239) 0 * Os_TE_19195 Os_TE_19193 Chr9 7668029 7668028 + SPMLIKE 10989 0.0008 (1/1232) 0 * * Os_TE_19184 Chr9 7660442 7664474 - RIRE3A_LTR 10580 0.8768 (1068/1218) 1 Intact * Os_TE_19170 Chr9 7654177 7654178 - CACTA-M 1129 0.1242 (152/1224) 0 * * Os_TE_19156 Chr9 7649282 7649281 - ORSgTETN00200001 10994 0.0008 (1/1202) 0 * * Os_TE_19151 Chr9 7646859 7646860 - RIRE3A_LTR 10580 0.0007 (2/2841) 0 * * Os_TE_19139 Chr9 7642844 7642845 + MUDRN1_OS 764 0.0011 (3/2610) 0 * Os_TE_19138 Os_TE_19138 Chr9 7642836 7642835 - MUDRN1_OS 764 0.0015 (4/2757) 0 * Os_TE_19139 Os_TE_19131 Chr9 7640326 7640327 + CACTA-I 1124 0.0300 (87/2896) 0 * * Os_TE_19127 Chr9 7639734 7639735 - ORSgTEMT01701488 202 0.3965 (1124/2835) 0 * * Os_TE_19124 Chr9 7639564 7639565 - ORSgTETNOOT00355 222 0.3879 (1097/2828) 0 * Os_TE_19123 Os_TE_19123 Chr9 7639557 7639556 + ORSgTETNOOT00355 222 0.3942 (1121/2844) 0 * Os_TE_19124 Os_TE_19117 Chr9 7638093 7638247 + CACTA-B 1103 0.3630 (991/2730) 1 Intact * Os_TE_19116 Chr9 7637756 7636265 + MUJITOS1 3987 0.6674 (1928/2889) 1 Intact Os_TE_19111 Os_TE_19111 Chr9 7636264 7637755 + MUJITOS1 3987 0.7243 (1999/2760) 1 Intact Os_TE_19116 Os_TE_19107 Chr9 7635979 7635980 - YOUREN 286 0.3915 (1154/2948) 0 * Os_TE_19106 Os_TE_19106 Chr9 7635977 7635976 + YOUREN 286 0.2341 (600/2563) 0 * Os_TE_19107 Os_TE_19105 Chr9 7635932 7635931 + COPI2_LTR 4733 0.0003 (1/2979) 0 * * Os_TE_19097 Chr9 7635395 7635642 + ORSgTEMT00901138 254 0.8761 (1994/2276) 1 Intact * Os_TE_19096 Chr9 7635335 7635334 + ORSgTEMT00900339 250 0.3740 (1077/2880) 0 * * Os_TE_19093 Chr9 7635260 7635259 + RIRE2_LTR 11306 0.0004 (1/2846) 0 * * Os_TE_19080 Chr9 7631294 7631295 - RIRE3_LTR 12054 0.0867 (250/2885) 0 * Os_TE_19079 Os_TE_19079 Chr9 7631290 7631289 + RIRE3_LTR 12054 0.0757 (214/2827) 0 * Os_TE_19080 Os_TE_19074 Chr9 7630621 7618720 - TRUNCATOR 2918 0.6239 (1798/2882) 1 Intact * Os_TE_18935 Chr9 7555316 7617852 + COPIA1-LTR_OS 9292 0.4870 (1068/2193) 1 Intact * Os_TE_18858 Chr9 7525026 7525025 + ORSgTEMT00300063 413 0.1855 (534/2878) 0 * * Os_TE_18853 Chr9 7520558 7520559 - RIRE3_LTR 12054 0.0007 (2/2949) 0 * Os_TE_18852 Os_TE_18852 Chr9 7520554 7520553 + RIRE3_LTR 12054 0.0007 (2/2942) 0 * Os_TE_18853 Os_TE_18846 Chr9 7518915 7518914 + ORSgTEMT01700429 128 0.3697 (1026/2775) 0 * Os_TE_18845 Os_TE_18845 Chr9 7518912 7518913 - ORSgTEMT01701056 154 0.3781 (1067/2822) 0 * Os_TE_18846 Os_TE_18804 Chr9 7500839 7500838 - STOWAWAY12_OS 312 0.0024 (7/2929) 0 * Os_TE_18803 Os_TE_18803 Chr9 7500838 7500839 - ORSgTEMT02900061 318 0.0024 (7/2921) 0 * Os_TE_18804 Os_TE_18797 Chr9 7499655 7499656 - INDITTO 263 0.0003 (1/2948) 0 * Os_TE_18796 Os_TE_18796 Chr9 7499653 7499652 + INDITTO 263 0.0003 (1/2938) 0 * Os_TE_18797 Os_TE_18795 Chr9 7499612 7499613 - RIRE3A_LTR 10580 0.0165 (48/2901) 0 * Os_TE_18794 Os_TE_18794 Chr9 7499608 7499607 + RIRE3A_LTR 10580 0.0163 (48/2948) 0 * Os_TE_18795 Os_TE_18792 Chr9 7499505 7499504 + RIRE3_LTR 12054 0.0510 (150/2939) 0 * * Os_TE_18778 Chr9 7495411 7495410 + RIRE2_LTR 11306 0.0037 (11/2945) 0 * * Os_TE_18745 Chr9 7481678 7481677 + COPIA2-LTR_OS 6433 0.0003 (1/2963) 0 * * Os_TE_18730 Chr9 7473177 7473178 + AMYLTP 383 0.0768 (214/2788) 0 * * Os_TE_18727 Chr9 7471327 7471326 - STOWAWAY51_OS 246 0.0450 (121/2686) 0 * * Os_TE_18716 Chr9 7470302 7469992 - ORSgTEMT00101599 340 0.4025 (1162/2887) 1 Intact Os_TE_18715 Os_TE_18715 Chr9 7469985 7470299 + NDNA1TNA_OS 334 0.2940 (729/2480) 1 Intact Os_TE_18716 Os_TE_18710 Chr9 7469417 7450913 + OSTONOR1_LTR 6440 0.2652 (778/2934) 1 Intact Os_TE_18684 Os_TE_18684 Chr9 7450912 7469417 - OSTONOR1_LTR 6440 0.2724 (800/2937) 1 Intact Os_TE_18710 Os_TE_18656 Chr9 7442714 7442713 - ORSiTERT00200154 9386 0.0875 (259/2959) 0 * * Os_TE_18652 Chr9 7442104 7442105 - RETROSAT2LTRA 3112 0.3858 (1139/2952) 0 * * Os_TE_18639 Chr9 7438468 7438469 - RIRE3A_LTR 10580 0.0004 (1/2635) 0 * * Os_TE_18632 Chr9 7436748 7436749 - RIREX_LTR 8828 0.0246 (70/2844) 0 * Os_TE_18631 Os_TE_18631 Chr9 7436744 7436743 + RIREX_LTR 8828 0.0253 (72/2844) 0 * Os_TE_18632 Os_TE_18625 Chr9 7434943 7434944 - ORSgTETN00200001 10994 0.0390 (106/2718) 0 * Os_TE_18624 Os_TE_18624 Chr9 7434941 7434940 + SPMLIKE 10989 0.0510 (143/2805) 0 * Os_TE_18625 Os_TE_18622 Chr9 7434347 7434348 - ORSgTETN00200001 10994 0.3653 (1014/2776) 0 * Os_TE_18621 Os_TE_18621 Chr9 7434345 7434344 + SPMLIKE 10989 0.3789 (1064/2808) 0 * Os_TE_18622 Os_TE_18609 Chr9 7433388 7433389 - RETRO2_LTR 12874 0.0295 (84/2848) 0 * * Os_TE_18606 Chr9 7433254 7433253 + ORSgTEMT01601122 212 0.0034 (10/2953) 0 * Os_TE_18605 Os_TE_18605 Chr9 7433253 7433254 + STOWAWAY21_OS 243 0.0037 (11/2949) 0 * Os_TE_18606 Os_TE_18525 Chr9 7410874 7410875 - RIRE2_LTR 11306 0.0007 (2/2951) 0 * Os_TE_18524 Os_TE_18524 Chr9 7410870 7410869 - ORSgTERT00201216 11284 0.0007 (2/2951) 0 * Os_TE_18525 Os_TE_18523 Chr9 7410804 7410803 - SPMLIKE 10989 0.0003 (1/2935) 0 * * Os_TE_18502 Chr9 7395535 7395536 - SEVERIN-2 1952 0.0024 (7/2885) 0 * Os_TE_18501 Os_TE_18501 Chr9 7395532 7395531 + SEVERIN-2 1952 0.0024 (7/2898) 0 * Os_TE_18502 Os_TE_18485 Chr9 7388063 7388064 - SZ-22_LTR 4403 0.0289 (85/2938) 0 * Os_TE_18484 Os_TE_18484 Chr9 7388059 7388058 + ORSiTERTOOT00226 792 0.0293 (86/2939) 0 * Os_TE_18485 Os_TE_18456 Chr9 7381474 7381475 - RIRE3A_LTR 10580 0.0781 (219/2803) 0 * * Os_TE_18438 Chr9 7379721 7379722 + COPIA2-LTR_OS 6433 0.0007 (2/2957) 0 * Os_TE_18437 Os_TE_18437 Chr9 7379717 7379716 - COPIA2-LTR_OS 6433 0.0007 (2/2958) 0 * Os_TE_18438 Os_TE_18434 Chr9 7379055 7379054 - SC-10_LTR 4920 0.0281 (83/2959) 0 * * Os_TE_18390 Chr9 7359247 7359246 - TRUNCATOR 2918 0.0566 (167/2949) 0 * * Os_TE_18387 Chr9 7358636 7358635 - ORSgTEMT02400179 221 0.0072 (10/1394) 0 * Os_TE_18386 Os_TE_18386 Chr9 7358634 7358635 + ORSgTEMT02400014 229 0.3525 (1022/2899) 0 * Os_TE_18387 Os_TE_18369 Chr9 7352070 7352069 + TNR2A 152 0.6703 (1606/2396) 0 * * Os_TE_18342 Chr9 7340777 7340778 - ORSiTETNOOT00216 3569 0.1354 (393/2902) 0 * * Os_TE_18325 Chr9 7335149 7335150 - RIREX_LTR 8828 0.0280 (83/2966) 0 * Os_TE_18324 Os_TE_18324 Chr9 7335145 7335144 + RIREX_LTR 8828 0.0280 (83/2961) 0 * Os_TE_18325 Os_TE_18315 Chr9 7327744 7327743 - ORSgTEMT01701782 154 0.0088 (26/2953) 0 * Os_TE_18314 Os_TE_18314 Chr9 7327741 7327742 - ORSgTEMT01700468 154 0.0095 (28/2945) 0 * Os_TE_18315 Os_TE_18279 Chr9 7316879 7316878 - BUHUI 375 0.0007 (2/2985) 0 * * Os_TE_18277 Chr9 7316038 7316037 + STOWAWAY51_OS 246 0.0071 (21/2968) 0 * * Os_TE_18265 Chr9 7315324 7315325 - INDITTO 263 0.0041 (12/2911) 0 * Os_TE_18264 Os_TE_18264 Chr9 7315321 7315320 - ORSgTETNOOT01072 229 0.0035 (10/2844) 0 * Os_TE_18265 Os_TE_18262 Chr9 7315219 7315220 - MuDR4_OS 7610 0.0081 (24/2946) 0 * Os_TE_18261 Os_TE_18261 Chr9 7315212 7315211 - MuDR4_OS 7610 0.0085 (25/2950) 0 * Os_TE_18262 Os_TE_18259 Chr9 7314934 7314935 - RIRE3_LTR 12054 0.0004 (1/2705) 0 * Os_TE_18258 Os_TE_18258 Chr9 7314931 7314930 + RIRE3_LTR 12054 0.0004 (1/2763) 0 * Os_TE_18259 Os_TE_18256 Chr9 7314884 7314883 + RETRO2_LTR 12874 0.3613 (1063/2942) 0 * * Os_TE_18244 Chr9 7313406 7313407 - ORSgTETN00200001 10994 0.0204 (60/2934) 0 * Os_TE_18243 Os_TE_18243 Chr9 7313404 7313403 + SPMLIKE 10989 0.0241 (71/2945) 0 * Os_TE_18244 Os_TE_18231 Chr9 7310360 7310361 - RIREX_LTR 8828 0.0167 (48/2875) 0 * Os_TE_18230 Os_TE_18230 Chr9 7310356 7310355 + RIREX_LTR 8828 0.0180 (52/2890) 0 * Os_TE_18231 Os_TE_18229 Chr9 7309774 7309773 + ORSgTETNOOT00908 242 0.0250 (73/2916) 0 * * Os_TE_18227 Chr9 7309553 7309552 + OSTE33 1012 0.0830 (221/2664) 0 * * Os_TE_18195 Chr9 7292599 7292600 - NDNA1TNA_OS 334 0.0050 (15/2990) 0 * Os_TE_18194 Os_TE_18194 Chr9 7292598 7292597 + NDNA1TNA_OS 334 0.0057 (17/2991) 0 * Os_TE_18195 Os_TE_18189 Chr9 7290752 7290753 - COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_18188 Os_TE_18188 Chr9 7290748 7290747 + COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_18189 Os_TE_18157 Chr9 7285550 7285551 + COPIA2-LTR_OS 6433 0.0091 (27/2978) 0 * Os_TE_18156 Os_TE_18156 Chr9 7285546 7285545 - COPIA2-LTR_OS 6433 0.0091 (27/2979) 0 * Os_TE_18157 Os_TE_18155 Chr9 7285339 7285340 - MPING 430 0.0003 (1/2981) 0 * Os_TE_18154 Os_TE_18154 Chr9 7285337 7285336 + MPING 430 0.0003 (1/2983) 0 * Os_TE_18155 Os_TE_18145 Chr9 7284333 7284332 + NDNA1TNA_OS 334 0.0077 (23/2980) 0 * Os_TE_18144 Os_TE_18144 Chr9 7284313 7284314 - NDNA1TNA_OS 334 0.0077 (23/2977) 0 * Os_TE_18145 Os_TE_18133 Chr9 7280935 7280934 - STOWAWAY51_OS 246 0.0003 (1/2965) 0 * * Os_TE_18130 Chr9 7280601 7280602 - INDITTO 263 0.0003 (1/2993) 0 * Os_TE_18129 Os_TE_18129 Chr9 7280599 7280598 + INDITTO 263 0.0003 (1/2989) 0 * Os_TE_18130 Os_TE_18122 Chr9 7276898 7276899 + STOWAWAY11_OS 292 0.0749 (222/2963) 0 * Os_TE_18121 Os_TE_18121 Chr9 7276897 7276896 - STOWAWAY11_OS 292 0.0730 (216/2957) 0 * Os_TE_18122 Os_TE_18120 Chr9 7276720 7276721 + STOWAWAY11_OS 292 0.0749 (222/2963) 0 * Os_TE_18119 Os_TE_18119 Chr9 7276719 7276718 - STOWAWAY11_OS 292 0.0753 (212/2816) 0 * Os_TE_18120 Os_TE_18114 Chr9 7273421 7273422 - SC-3_LTR 5748 0.0003 (1/2982) 0 * Os_TE_18113 Os_TE_18113 Chr9 7273417 7273416 + ORSiTERTOOT00296 5553 0.0004 (1/2783) 0 * Os_TE_18114 Os_TE_18100 Chr9 7263464 7263465 + COPIA2-LTR_OS 6433 0.7399 (2065/2791) 0 * Os_TE_18099 Os_TE_18099 Chr9 7263460 7263459 - COPIA2-LTR_OS 6433 0.7424 (2078/2799) 0 * Os_TE_18100 Os_TE_18091 Chr9 7259163 7259164 + TWIF 586 0.0004 (1/2785) 0 * Os_TE_18090 Os_TE_18090 Chr9 7259156 7259155 - ORSiTETNOOT00134 607 0.0007 (2/2984) 0 * Os_TE_18091 Os_TE_18072 Chr9 7250637 7250638 + COPIA2-LTR_OS 6433 0.0010 (3/2968) 0 * Os_TE_18071 Os_TE_18071 Chr9 7250633 7250632 - COPIA2-LTR_OS 6433 0.0010 (3/2985) 0 * Os_TE_18072 Os_TE_18067 Chr9 7249080 7249081 - MPING 430 0.0017 (5/2984) 0 * Os_TE_18066 Os_TE_18066 Chr9 7249078 7249077 + MPING 430 0.0017 (5/2978) 0 * Os_TE_18067 Os_TE_18063 Chr9 7245406 7245405 + TELIA 141 0.0727 (216/2970) 0 * * Os_TE_18059 Chr9 7241841 7241842 - SZ-40LTR 2465 0.0003 (1/2983) 0 * Os_TE_18058 Os_TE_18058 Chr9 7241837 7241836 + GYPSY-A_LTR 8951 0.0003 (1/2985) 0 * Os_TE_18059 Os_TE_18056 Chr9 7239868 7239867 - ORSgTEMT00600085 364 0.0017 (5/2890) 0 * Os_TE_18055 Os_TE_18055 Chr9 7239864 7239865 + ORSgTEMT00600192 355 0.0017 (5/2873) 0 * Os_TE_18056 Os_TE_18037 Chr9 7238088 7238087 - RIREX_LTR 8828 0.0382 (114/2988) 0 * * Os_TE_18036 Chr9 7238024 7238025 - RIREX_LTR 8828 0.0255 (76/2985) 0 * Os_TE_18035 Os_TE_18035 Chr9 7238020 7238019 + RIREX_LTR 8828 0.0258 (77/2986) 0 * Os_TE_18036 Os_TE_18008 Chr9 7226932 7226933 - RIRE3_LTR 12054 0.0574 (153/2667) 0 * Os_TE_18007 Os_TE_18007 Chr9 7226928 7226927 + RIRE3_LTR 12054 0.0268 (71/2646) 0 * Os_TE_18008 Os_TE_17986 Chr9 7214974 7214973 + ORSgTETNOOT00908 242 0.0257 (76/2961) 0 * * Os_TE_17984 Chr9 7214069 7208239 + MDR2 6967 0.3283 (940/2863) 1 Intact Os_TE_17983 Os_TE_17983 Chr9 7208236 7214065 - MDR2 6967 0.2664 (706/2650) 1 Intact Os_TE_17984 Os_TE_17968 Chr9 7198295 7198294 + SZ-62LTR 3649 0.0719 (208/2891) 0 * * Os_TE_17963 Chr9 7197023 7197024 + AMYLTP 383 0.0531 (158/2975) 0 * Os_TE_17962 Os_TE_17962 Chr9 7197015 7197014 - AMYLTP 383 0.0541 (161/2974) 0 * Os_TE_17963 Os_TE_17959 Chr9 7192314 7192315 + ORSiTERTOOT00296 5553 0.0010 (3/2989) 0 * Os_TE_17958 Os_TE_17958 Chr9 7192312 7192311 + ORSiTERTOOT00296 5553 0.0010 (3/2973) 0 * Os_TE_17959 Os_TE_17957 Chr9 7191864 7191865 + ORSiTERTOOT00296 5553 0.0003 (1/2982) 0 * * Os_TE_17950 Chr9 7188993 7188994 - SEVERIN-2 1952 0.5719 (1448/2532) 0 * * Os_TE_17943 Chr9 7188346 7188347 - ENSPM6_OS 9815 0.0003 (1/2982) 0 * Os_TE_17942 Os_TE_17942 Chr9 7188344 7188343 + ENSPM5_OS 9581 0.0003 (1/2981) 0 * Os_TE_17943 Os_TE_17940 Chr9 7185839 7185838 + COPI2_LTR 4733 0.0003 (1/2979) 0 * * Os_TE_17923 Chr9 7183549 7183550 - AMYLTP 383 0.0007 (2/2926) 0 * Os_TE_17922 Os_TE_17922 Chr9 7183541 7183540 + AMYLTP 383 0.0010 (3/2926) 0 * Os_TE_17923 Os_TE_17920 Chr9 7183194 7183195 - STOWAWAY51_OS 246 0.0003 (1/2949) 0 * * Os_TE_17896 Chr9 7173812 7173813 + COPIA2-LTR_OS 6433 0.0007 (2/2982) 0 * * Os_TE_17864 Chr9 7164108 7164107 - SZ-22_LTR 4403 0.0003 (1/2987) 0 * * Os_TE_17810 Chr9 7142933 7142934 - NDNA1TNA_OS 334 0.0023 (7/2993) 0 * * Os_TE_17804 Chr9 7140859 7140858 + SZ-55_LTR 10318 0.0003 (1/2990) 0 * * Os_TE_17801 Chr9 7139856 7139857 + RETROSAT4_LTR 13504 0.0182 (54/2975) 0 * Os_TE_17800 Os_TE_17800 Chr9 7139852 7139851 - RETROSAT4_LTR 13504 0.0205 (60/2929) 0 * Os_TE_17801 Os_TE_17798 Chr9 7138923 7138922 - ORSiTERTOOT00291 11421 0.0540 (160/2964) 0 * * Os_TE_17775 Chr9 7133891 7132299 + SZ-30_LTR 6377 0.8933 (2537/2840) 1 Intact * Os_TE_17750 Chr9 7126994 7122829 - RIRE3A_LTR 10580 0.3078 (779/2531) 1 Intact Os_TE_17749 Os_TE_17749 Chr9 7122827 7126994 + ORSiTERTOOT00027 10853 0.3034 (768/2531) 1 Intact Os_TE_17750 Os_TE_17740 Chr9 7118016 7118015 - ORSgTEMT00500471 125 0.0008 (2/2455) 0 * * Os_TE_17698 Chr9 7095424 7095425 + ORSiTERTOOT00226 792 0.0615 (148/2407) 0 * Os_TE_17697 Os_TE_17697 Chr9 7095420 7095419 - SZ-22_LTR 4403 0.0638 (154/2415) 0 * Os_TE_17698 Os_TE_17696 Chr9 7094835 7094834 - ORSgTEMT01600152 226 0.0226 (56/2476) 0 * Os_TE_17695 Os_TE_17695 Chr9 7094832 7094833 + ORSgTEMT01602181 239 0.0270 (67/2480) 0 * Os_TE_17696 Os_TE_17681 Chr9 7089168 7089169 + F569 228 0.1567 (453/2891) 0 * * Os_TE_17671 Chr9 7085050 7085049 + SPMLIKE 10989 0.0011 (2/1798) 0 * * Os_TE_17659 Chr9 7078880 7078881 - TYPEU1 380 0.0003 (1/2917) 0 * * Os_TE_17657 Chr9 7077348 7077347 - COPI2_LTR 4733 0.0003 (1/2970) 0 * * Os_TE_17655 Chr9 7077111 7077112 - ORSgTEMT01800105 452 0.1162 (330/2840) 0 * Os_TE_17654 Os_TE_17654 Chr9 7077110 7077109 + TNR8-1 418 0.1075 (321/2986) 0 * Os_TE_17655 Os_TE_17653 Chr9 7077103 7077104 - ORSgTEMT01601605 240 0.0520 (155/2979) 0 * * Os_TE_17626 Chr9 7068664 7064505 - RIRE3A_LTR 10580 0.2694 (713/2647) 1 Intact Os_TE_17624 Os_TE_17624 Chr9 7064505 7068664 + ORSiTERTOOT00027 10853 0.2790 (750/2688) 1 Intact Os_TE_17626 Os_TE_17623 Chr9 7064213 7064214 - RIRE2_LTR 11306 0.0007 (2/2748) 0 * Os_TE_17622 Os_TE_17622 Chr9 7064209 7064208 - ORSgTERT00201216 11284 0.0007 (2/2751) 0 * Os_TE_17623 Os_TE_17588 Chr9 7052957 7052958 - COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_17587 Os_TE_17587 Chr9 7052953 7052952 + COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_17588 Os_TE_17583 Chr9 7050541 7050542 - ORSgTEMT02400179 221 0.0017 (5/2989) 0 * Os_TE_17582 Os_TE_17582 Chr9 7050540 7050539 - TYPEM 227 0.0017 (5/2989) 0 * Os_TE_17583 Os_TE_17579 Chr9 7048115 7048116 + ORSiTERTOOT00226 792 0.0003 (1/2996) 0 * Os_TE_17578 Os_TE_17578 Chr9 7048111 7048110 - SZ-22_LTR 4403 0.0003 (1/2994) 0 * Os_TE_17579 Os_TE_17573 Chr9 7045984 7045983 - ORSiTERT00100062 5674 0.0003 (1/2996) 0 * * Os_TE_17553 Chr9 7039291 7039292 + GYPSY-A_LTR 8951 0.0101 (21/2072) 0 * Os_TE_17552 Os_TE_17552 Chr9 7039287 7039286 - SZ-40LTR 2465 0.0100 (21/2098) 0 * Os_TE_17553 Os_TE_17500 Chr9 7018246 7018245 + SEVERIN-2 1952 0.0237 (71/2991) 0 * * Os_TE_17467 Chr9 7009995 7009996 - SUSU 279 0.3231 (916/2835) 0 * * Os_TE_17462 Chr9 7006069 7006070 - SC-8_LTR 4951 0.0007 (2/2971) 0 * Os_TE_17461 Os_TE_17461 Chr9 7006065 7006064 + ORSiTERTOOT00381 4988 0.0007 (2/2969) 0 * Os_TE_17462 Os_TE_17453 Chr9 6995203 6995202 - COPI2_LTR 4733 0.0007 (2/2993) 0 * * Os_TE_17427 Chr9 6984519 6984518 + STOWAWAY51_OS 246 0.0193 (57/2951) 0 * Os_TE_17426 Os_TE_17426 Chr9 6984513 6984514 + ORSgTEMT01601591 242 0.0186 (55/2954) 0 * Os_TE_17427 Os_TE_17411 Chr9 6981789 6981790 + RIRE3_LTR 12054 0.0017 (5/2979) 0 * Os_TE_17410 Os_TE_17410 Chr9 6981785 6981784 - RIRE3_LTR 12054 0.0017 (5/2985) 0 * Os_TE_17411 Os_TE_17409 Chr9 6981583 6981584 - EnSpm-16_OS 13336 0.0003 (1/2980) 0 * Os_TE_17408 Os_TE_17408 Chr9 6981581 6981580 + EnSpm-16_OS 13336 0.0003 (1/2984) 0 * Os_TE_17409 Os_TE_17401 Chr9 6975211 6975210 + ORSgTETNOOT00908 242 0.0020 (6/2998) 0 * * Os_TE_17388 Chr9 6968729 6968730 - NDNA1TNA_OS 334 0.0003 (1/2928) 0 * Os_TE_17387 Os_TE_17387 Chr9 6968727 6968726 + NDNA1TNA_OS 334 0.0003 (1/2951) 0 * Os_TE_17388 Os_TE_17372 Chr9 6965784 6965783 - ORSgTEMT01601432 239 0.0831 (241/2901) 0 * Os_TE_17371 Os_TE_17371 Chr9 6965781 6965782 + ORSgTEMT01602181 239 0.0769 (221/2874) 0 * Os_TE_17372 Os_TE_17370 Chr9 6965496 6965495 + CASTAWAY-3 314 0.0286 (82/2866) 0 * * Os_TE_17333 Chr9 6943319 6943318 + ORSiCMCM00100019 2717 0.0060 (18/2986) 0 * * Os_TE_17330 Chr9 6942571 6942570 - ORSgTETN00200001 10994 0.0003 (1/2983) 0 * * Os_TE_17327 Chr9 6942303 6942304 + COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_17326 Os_TE_17326 Chr9 6942299 6942298 - COPI2_LTR 4733 0.0003 (1/2997) 0 * Os_TE_17327 Os_TE_17319 Chr9 6941201 6941202 + RIREX_LTR 8828 0.3899 (1167/2993) 0 * Os_TE_17318 Os_TE_17318 Chr9 6941197 6941196 - RIREX_LTR 8828 0.3900 (1165/2987) 0 * Os_TE_17319 Os_TE_17315 Chr9 6940475 6940476 - COPIA2-LTR_OS 6433 0.0017 (5/2948) 0 * Os_TE_17314 Os_TE_17314 Chr9 6940471 6940470 + COPIA2-LTR_OS 6433 0.0017 (5/2954) 0 * Os_TE_17315 Os_TE_17312 Chr9 6938066 6938065 + ORSiTERTOOT00226 792 0.0018 (5/2823) 0 * * Os_TE_17305 Chr9 6937273 6937272 + CACTA-B 1103 0.0859 (255/2970) 0 * Os_TE_17304 Os_TE_17304 Chr9 6937272 6937273 - SPMLIKE 10989 0.0869 (259/2979) 0 * Os_TE_17305 Os_TE_17270 Chr9 6922886 6922887 + TRUNCATOR 2918 0.0264 (70/2652) 0 * * Os_TE_17267 Chr9 6921421 6921422 + CACTA-M 1129 0.0007 (2/2690) 0 * Os_TE_17266 Os_TE_17266 Chr9 6921419 6921418 - CACTA-M 1129 0.0007 (2/2686) 0 * Os_TE_17267 Os_TE_17265 Chr9 6920959 6920563 + ORSgTEMT00300122 416 0.8615 (2296/2665) 1 Intact Os_TE_17261 Os_TE_17261 Chr9 6920557 6920953 + ORSgTEMT00300069 394 0.7823 (2267/2898) 1 Intact Os_TE_17265 Os_TE_17260 Chr9 6920476 6920477 - ORSgTEMT01700794 153 0.1037 (307/2961) 0 * * Os_TE_17255 Chr9 6917290 6917289 - ORSgTEMT01701254 154 0.1061 (304/2866) 0 * Os_TE_17254 Os_TE_17254 Chr9 6917288 6917289 - ORSgTEMT01700804 154 0.1037 (296/2854) 0 * Os_TE_17255 Os_TE_17249 Chr9 6913771 6916715 - SEVERIN-2 1952 0.8984 (2643/2942) 1 Intact * Os_TE_17246 Chr9 6913401 6913402 - ORSgTEMT00101341 314 0.0369 (109/2954) 0 * Os_TE_17245 Os_TE_17245 Chr9 6913400 6913399 + NDNA1TNA_OS 334 0.0364 (108/2963) 0 * Os_TE_17246 Os_TE_17242 Chr9 6912081 6912082 - ORSgTETN00200001 10994 0.0949 (280/2951) 0 * Os_TE_17241 Os_TE_17241 Chr9 6912079 6912078 + SPMLIKE 10989 0.1051 (312/2970) 0 * Os_TE_17242 Os_TE_17240 Chr9 6911717 6911718 - INDITTO 263 0.0003 (1/2926) 0 * * Os_TE_17238 Chr9 6911689 6911688 - ORSiTEMT01000008 242 0.0017 (5/2958) 0 * * Os_TE_17237 Chr9 6911677 6911676 - ORSgTEMT00101174 225 0.1043 (310/2971) 0 * Os_TE_17236 Os_TE_17236 Chr9 6911676 6911677 - STOWAWAY10_OS 259 0.1045 (311/2975) 0 * Os_TE_17237 Os_TE_17234 Chr9 6911061 6911062 - ORSgTETN00200001 10994 0.1023 (303/2963) 0 * Os_TE_17233 Os_TE_17233 Chr9 6911059 6911058 + SPMLIKE 10989 0.1064 (317/2978) 0 * Os_TE_17234 Os_TE_17230 Chr9 6908187 6908186 - SPMLIKE 10989 0.0964 (281/2916) 0 * * Os_TE_17228 Chr9 6907442 6907443 - STOWAWAY42_OS 242 0.1072 (318/2966) 0 * * Os_TE_17227 Chr9 6907258 6907259 + SC-1_LTR 6888 0.1089 (317/2910) 0 * * Os_TE_17226 Chr9 6907096 6907095 + ORSgTEMT01701591 154 0.1452 (431/2969) 0 * Os_TE_17225 Os_TE_17225 Chr9 6907093 6907094 - ORSgTEMT01700029 143 0.1448 (429/2962) 0 * Os_TE_17226 Os_TE_17224 Chr9 6906854 6906563 + F524 291 0.8650 (2498/2888) 1 Intact * Os_TE_17208 Chr9 6902472 6902473 - STOWAWAY51_OS 246 0.0024 (7/2890) 0 * * Os_TE_17203 Chr9 6901768 6901659 + DEBOAT 110 0.7596 (2247/2958) 1 Intact Os_TE_17200 Os_TE_17200 Chr9 6901659 6901768 + DEBOAT 110 0.7636 (2264/2965) 1 Intact Os_TE_17203 Os_TE_17199 Chr9 6901290 6901291 + ORSgTEMT01602181 239 0.1401 (414/2954) 0 * * Os_TE_17176 Chr9 6897287 6897288 - COPI2_LTR 4733 0.0004 (1/2552) 0 * Os_TE_17175 Os_TE_17175 Chr9 6897283 6897282 + COPI2_LTR 4733 0.0004 (1/2813) 0 * Os_TE_17176 Os_TE_17173 Chr9 6896741 6896740 + ORSgTETNOOT00908 242 0.0003 (1/2938) 0 * * Os_TE_17165 Chr9 6895933 6895932 + F804 170 0.0012 (3/2558) 0 * * Os_TE_17164 Chr9 6895864 6895865 - ORSgTEMT01601770 238 0.0007 (2/2950) 0 * * Os_TE_17154 Chr9 6893564 6893873 - TYPEH 309 0.8605 (2437/2832) 1 Intact * Os_TE_17152 Chr9 6893042 6893041 - TRUNCATOR2_LTR 2904 0.1488 (416/2795) 0 * * Os_TE_17120 Chr9 6880837 6880838 + ORSgTERTOOT00067 6483 0.0035 (4/1148) 0 * * Os_TE_17099 Chr9 6875501 6875500 + TRUNCATOR 2918 0.0004 (1/2510) 0 * * Os_TE_17085 Chr9 6869657 6869656 - INDITTO 263 0.0003 (1/2883) 0 * * Os_TE_17073 Chr9 6865809 6865808 - ORSgTEMT00901630 250 0.1512 (443/2930) 0 * * Os_TE_17049 Chr9 6848542 6848541 - ORSiTERT00200154 9386 0.0464 (136/2934) 0 * * Os_TE_17040 Chr9 6846403 6846404 + TRUNCATOR 2918 0.0029 (7/2420) 0 * * Os_TE_17038 Chr9 6845786 6845785 - TRUNCATOR 2918 0.0567 (165/2912) 0 * Os_TE_17037 Os_TE_17037 Chr9 6845785 6845786 + TRUNCATOR 2918 0.0613 (179/2920) 0 * Os_TE_17038 Os_TE_17035 Chr9 6845529 6845530 + SPMLIKE 10989 0.1457 (424/2910) 0 * * Os_TE_17011 Chr9 6833945 6833944 + HARB-1_OS 5166 0.0054 (14/2588) 0 * * Os_TE_17008 Chr9 6833550 6833551 + TRUNCATOR 2918 0.1583 (431/2723) 0 * * Os_TE_17005 Chr9 6833004 6833003 - TYPEU1 380 0.0024 (7/2907) 0 * * Os_TE_16990 Chr9 6826814 6832147 - COPIA3-LTR_OS 5061 0.8618 (2519/2923) 1 Intact * Os_TE_16987 Chr9 6826565 6826337 - ORSgTEMT00901894 230 0.8588 (2519/2933) 1 Intact * Os_TE_16964 Chr9 6813484 6813485 - ORSgTETN00200001 10994 0.0660 (112/1697) 0 * Os_TE_16963 Os_TE_16963 Chr9 6813482 6813481 + SPMLIKE 10989 0.0676 (127/1880) 0 * Os_TE_16964 Os_TE_16962 Chr9 6813126 6802969 + ECSR 154 0.7644 (1424/1863) 1 Intact * Os_TE_16951 Chr9 6800952 6800953 + ORSiCMCM00100019 2717 0.0007 (1/1463) 0 * * Os_TE_16950 Chr9 6800880 6800881 - RIRE2_LTR 11306 0.0007 (1/1474) 0 * Os_TE_16949 Os_TE_16949 Chr9 6800876 6800875 + RIRE2_LTR 11306 0.0007 (1/1466) 0 * Os_TE_16950 Os_TE_16946 Chr9 6796419 6796420 - ORSgTETN00200001 10994 0.0133 (39/2941) 0 * Os_TE_16945 Os_TE_16945 Chr9 6796417 6796416 + SPMLIKE 10989 0.0123 (36/2932) 0 * Os_TE_16946 Os_TE_16914 Chr9 6782707 6782706 - SZ-35LTR 3853 0.3444 (663/1925) 0 * * Os_TE_16913 Chr9 6782228 6782229 - ORSgTEMT02000041 194 0.0423 (125/2952) 0 * * Os_TE_16895 Chr9 6778153 6778154 + TRUNCATOR 2918 0.0428 (126/2944) 0 * * Os_TE_16892 Chr9 6777666 6777665 - RIREX_LTR 8828 0.0004 (1/2851) 0 * * Os_TE_16850 Chr9 6763199 6763200 + CLOUD-7 495 0.0397 (103/2596) 0 * * Os_TE_16836 Chr9 6757632 6757633 - SZ-9LTR 965 0.0008 (2/2663) 0 * Os_TE_16835 Os_TE_16835 Chr9 6757628 6757627 + SZ-9LTR 965 0.0008 (2/2592) 0 * Os_TE_16836 Os_TE_16829 Chr9 6756085 6756084 - ORSgTETN00200001 10994 0.0313 (83/2653) 0 * * Os_TE_16756 Chr9 6740182 6740181 - TRUNCATOR 2918 0.0126 (37/2932) 0 * Os_TE_16755 Os_TE_16755 Chr9 6740181 6740182 + TRUNCATOR 2918 0.0126 (37/2937) 0 * Os_TE_16756 Os_TE_16742 Chr9 6735926 6735927 + RETROSAT4_LTR 13504 0.0007 (2/2977) 0 * Os_TE_16741 Os_TE_16741 Chr9 6735922 6735921 - RETROSAT4_LTR 13504 0.0007 (2/2978) 0 * Os_TE_16742 Os_TE_16733 Chr9 6733634 6733635 - ORSgTETN00200001 10994 0.0074 (22/2979) 0 * Os_TE_16732 Os_TE_16732 Chr9 6733632 6733631 + SPMLIKE 10989 0.0077 (23/2979) 0 * Os_TE_16733 Os_TE_16731 Chr9 6733583 6733584 + ENSPM4_OS 11610 0.0081 (24/2969) 0 * * Os_TE_16729 Chr9 6732462 6732461 - CACTA-M 1129 0.0393 (117/2980) 0 * * Os_TE_16688 Chr9 6719201 6719061 - TELIA 141 0.0522 (155/2969) 1 Intact * Os_TE_16673 Chr9 6714209 6714210 - RIRE2_LTR 11306 0.1731 (366/2114) -1 * Os_TE_16672 Os_TE_16672 Chr9 6714205 6714204 + RIRE2_LTR 11306 0.1733 (375/2164) -1 * Os_TE_16673 Os_TE_16587 Chr9 6663266 6663267 - F569 228 0.0084 (25/2991) 0 * Os_TE_16586 Os_TE_16586 Chr9 6663264 6663263 + F569 228 0.0080 (24/2987) 0 * Os_TE_16587 Os_TE_16584 Chr9 6662805 6662806 + RETROSAT4_LTR 13504 0.0198 (59/2975) 0 * Os_TE_16583 Os_TE_16583 Chr9 6662801 6662800 - SZ-35LTR 3853 0.0202 (60/2977) 0 * Os_TE_16584 Os_TE_16569 Chr9 6657294 6657295 + STOWAWAY45_OS 266 0.2581 (752/2914) 0 * * Os_TE_16564 Chr9 6639899 6639900 - MuDR3_OS 8604 0.0391 (112/2861) 0 * Os_TE_16563 Os_TE_16563 Chr9 6639898 6639897 - MuDR3_OS 8604 0.0402 (115/2862) 0 * Os_TE_16564 Os_TE_16528 Chr9 6628789 6628788 + ENSPM6_OS 9815 0.2058 (578/2808) 0 * * Os_TE_16514 Chr9 6622889 6622890 - ORSgTETN00200001 10994 0.0425 (121/2844) 0 * Os_TE_16513 Os_TE_16513 Chr9 6622887 6622886 + SPMLIKE 10989 0.0422 (120/2845) 0 * Os_TE_16514 Os_TE_16503 Chr9 6618583 6618582 + SZ-55_LTR 10318 0.0011 (3/2826) 0 * * Os_TE_16499 Chr9 6617699 6617700 + ORSiTERTOOT00028 8600 0.0007 (2/2733) 0 * Os_TE_16498 Os_TE_16498 Chr9 6617695 6617694 - TRUNCATOR2_LTR 2904 0.0011 (3/2696) 0 * Os_TE_16499 Os_TE_16479 Chr9 6605970 6605969 - RETROSAT4_LTR 13504 0.0003 (1/2988) 0 * * Os_TE_16471 Chr9 6602843 6602842 - SEVERIN-2 1952 0.1000 (296/2959) 0 * * Os_TE_16448 Chr9 6593596 6593597 - ORSgTETN00200001 10994 0.0007 (2/2823) 0 * Os_TE_16447 Os_TE_16447 Chr9 6593594 6593593 + SPMLIKE 10989 0.0007 (2/2819) 0 * Os_TE_16448 Os_TE_16443 Chr9 6592868 6592869 - ENSPM_OS 9843 0.0934 (264/2827) 0 * * Os_TE_16442 Chr9 6592695 6592696 + COPIA2-LTR_OS 6433 0.0008 (2/2644) 0 * Os_TE_16441 Os_TE_16441 Chr9 6592691 6592690 - COPIA2-LTR_OS 6433 0.0007 (2/2911) 0 * Os_TE_16442 Os_TE_16422 Chr9 6587679 6587934 - WUJI 257 0.5896 (1138/1930) 1 Intact * Os_TE_16419 Chr9 6586142 6586143 - SZ-5LTR 1223 0.1032 (303/2937) 0 * Os_TE_16418 Os_TE_16418 Chr9 6586138 6586137 + COPIA1-LTR_OS 9292 0.1053 (310/2944) 0 * Os_TE_16419 Os_TE_16364 Chr9 6564853 6564854 - SZ-43LTR 4039 0.1448 (427/2949) 0 * Os_TE_16363 Os_TE_16363 Chr9 6564849 6564848 + SZ-43LTR 4039 0.1420 (411/2894) 0 * Os_TE_16364 Os_TE_16299 Chr9 6537034 6530298 - RIREX_LTR 8828 0.0759 (167/2201) 1 Intact * Os_TE_16291 Chr9 6528495 6528315 - ORSgTEMT01700507 154 0.6120 (1317/2152) 1 Intact Os_TE_16290 Os_TE_16290 Chr9 6528306 6528495 - ORSgTEMT01700210 190 0.6201 (1335/2153) 1 Intact Os_TE_16291 Os_TE_16288 Chr9 6527753 6527754 + RIRE2_LTR 11306 0.2210 (484/2190) 0 * * Os_TE_16284 Chr9 6527003 6527004 + GYPSY-A_LTR 8951 0.0009 (2/2191) 0 * * Os_TE_16262 Chr9 6519271 6519272 + TRUNCATOR 2918 0.0286 (4/140) -1 * * Os_TE_16240 Chr9 6509633 6509133 + DS-RICE3N 525 0.6048 (1255/2075) 1 Intact * Os_TE_16166 Chr9 6474032 6474033 + COPIA1-LTR_OS 9292 0.4254 (847/1991) 0 * Os_TE_16165 Os_TE_16165 Chr9 6474028 6474027 - COPIA1-LTR_OS 9292 0.4029 (838/2080) 0 * Os_TE_16166 Os_TE_16078 Chr9 6441910 6441909 + MuDR2_OS 6770 0.0003 (1/2893) 0 * * Os_TE_16076 Chr9 6441509 6441510 - COPIA2-LTR_OS 6433 0.0003 (1/2921) 0 * Os_TE_16075 Os_TE_16075 Chr9 6441505 6441504 + COPIA2-LTR_OS 6433 0.0005 (1/2147) 0 * Os_TE_16076 Os_TE_16064 Chr9 6431357 6431358 + TOUNJ-30 377 0.3693 (811/2196) 0 * * Os_TE_16063 Chr9 6431345 6431346 + DS-RICE4N 715 0.2265 (631/2786) 0 * * Os_TE_16062 Chr9 6430675 6430674 + SZ-30_LTR 6377 0.0020 (5/2552) 0 * * Os_TE_16060 Chr9 6428851 6428850 + ORSgTEMT01601809 239 0.2718 (805/2962) 0 * * Os_TE_16052 Chr9 6427180 6427339 - ORSgTETNOOT01534 208 0.7291 (2142/2938) 1 Intact * Os_TE_16051 Chr9 6426528 6426527 + ORSiTERTOOT00123 1836 0.0004 (1/2561) 0 * * Os_TE_16044 Chr9 6424458 6408236 + ORSgTERTOOT00009 12852 0.3881 (855/2203) 1 Intact * Os_TE_16027 Chr9 6407655 6407654 + ORSgTEMT02700001 255 0.2460 (702/2854) 0 * * Os_TE_16025 Chr9 6404467 6404466 + CACTA-D 1038 0.0027 (8/2988) 0 * Os_TE_16024 Os_TE_16024 Chr9 6404466 6404467 - CACTA-I 1124 0.0027 (8/2985) 0 * Os_TE_16025 Os_TE_16023 Chr9 6404459 6404460 + TRUNCATOR 2918 0.0003 (1/2984) 0 * * Os_TE_16021 Chr9 6404254 6404255 - ORSgTETN00200001 10994 0.0004 (1/2235) 0 * Os_TE_16020 Os_TE_16020 Chr9 6404252 6404251 + SPMLIKE 10989 0.0004 (1/2242) 0 * Os_TE_16021 Os_TE_16019 Chr9 6403344 6403345 + RIREX_LTR 8828 0.0499 (147/2943) 0 * * Os_TE_16017 Chr9 6403045 6403044 + RETROSAT4_LTR 13504 0.2873 (808/2812) 0 * * Os_TE_16016 Chr9 6401575 6401574 - ORSgTEMT00101174 225 0.1125 (140/1244) 0 * * Os_TE_16015 Chr9 6401440 6401441 - ORSgTEMT02600002 356 0.0595 (141/2368) 0 * * Os_TE_16014 Chr9 6400886 6400885 - CACTA-H 1152 0.2158 (637/2952) 0 * Os_TE_16013 Os_TE_16013 Chr9 6400885 6400886 + CACTA-B 1103 0.2037 (593/2911) 0 * Os_TE_16014 Os_TE_16011 Chr9 6400294 6400293 - RETRO2A_LTR 12895 0.0060 (18/2985) 0 * * Os_TE_15978 Chr9 6387928 6387927 - ORSgTEMT01701302 154 0.0010 (3/2957) 0 * Os_TE_15977 Os_TE_15977 Chr9 6387925 6387926 - ORSgTEMT01700524 154 0.0013 (4/2985) 0 * Os_TE_15978 Os_TE_15976 Chr9 6387110 6387109 - ORSgTEMT00500454 145 0.0635 (149/2345) 0 * * Os_TE_15970 Chr9 6384528 6384527 + TELIA 141 0.0003 (1/2989) 0 * * Os_TE_15957 Chr9 6374563 6374562 + ORSgTEMT01601591 242 0.0441 (132/2994) 0 * Os_TE_15956 Os_TE_15956 Chr9 6374560 6374561 + ORSgTEMT01601591 242 0.0416 (124/2984) 0 * Os_TE_15957 Os_TE_15935 Chr9 6365562 6365563 + COPI2_LTR 4733 0.0007 (2/2971) 0 * Os_TE_15934 Os_TE_15934 Chr9 6365558 6365557 - COPI2_LTR 4733 0.0003 (1/2965) 0 * Os_TE_15935 Os_TE_15878 Chr9 6337800 6337799 + RETRO2_LTR 12874 0.0047 (14/2978) 0 * * Os_TE_15872 Chr9 6334406 6334407 - SZ-50_LTR 11691 0.0003 (1/2979) 0 * * Os_TE_15774 Chr9 6296041 6296042 - RIRE3A_LTR 10580 0.0007 (2/2993) 0 * * Os_TE_15768 Chr9 6294843 6294844 - RIRE3_LTR 12054 0.0210 (63/2999) 0 * * Os_TE_15757 Chr9 6292685 6292686 + TRUNCATOR 2918 0.0639 (191/2989) 0 * Os_TE_15756 Os_TE_15756 Chr9 6292679 6292678 - ORSiTERT00200154 9386 0.0610 (182/2984) 0 * Os_TE_15757 Os_TE_15728 Chr9 6278211 6278212 - MUDRN3_OS 903 0.0048 (14/2919) 0 * Os_TE_15727 Os_TE_15727 Chr9 6278203 6278202 + MUDRN2_OS 756 0.0067 (14/2077) 0 * Os_TE_15728 Os_TE_15725 Chr9 6277857 6277856 + MPING 430 0.0003 (1/2928) 0 * * Os_TE_15692 Chr9 6267710 6267711 + ORSgTEMT01601122 212 0.0906 (186/2052) 0 * * Os_TE_15676 Chr9 6262498 6262499 - RIREX_LTR 8828 0.0140 (42/2990) 0 * * Os_TE_15667 Chr9 6261146 6261147 - RETRO1_LTR 8314 0.0007 (2/2989) 0 * Os_TE_15666 Os_TE_15666 Chr9 6261142 6261141 + RETRO2A_LTR 12895 0.0007 (2/2988) 0 * Os_TE_15667 Os_TE_15663 Chr9 6260862 6260861 - MDR2 6967 0.3440 (1024/2977) 0 * * Os_TE_15662 Chr9 6259633 6259634 - SC-3_LTR 5748 0.0007 (2/2986) 0 * Os_TE_15661 Os_TE_15661 Chr9 6259629 6259628 + ORSiTERTOOT00296 5553 0.0007 (2/2985) 0 * Os_TE_15662 Os_TE_15641 Chr9 6243059 6243060 + TWIF 586 0.0025 (7/2765) 0 * Os_TE_15640 Os_TE_15640 Chr9 6243052 6243051 - ORSiTETNOOT00134 607 0.0025 (7/2807) 0 * Os_TE_15641 Os_TE_15625 Chr9 6233741 6233742 - MPING 430 0.0184 (3/163) 0 * Os_TE_15624 Os_TE_15624 Chr9 6233739 6233738 + MPING 430 0.0011 (3/2813) 0 * Os_TE_15625 Os_TE_15608 Chr9 6230567 6230568 - COPI2_LTR 4733 0.0003 (1/2989) 0 * * Os_TE_15601 Chr9 6227234 6227233 + TRUNCATOR 2918 0.0515 (147/2857) 0 * Os_TE_15600 Os_TE_15600 Chr9 6227233 6227234 - TRUNCATOR 2918 0.0573 (145/2529) 0 * Os_TE_15601 Os_TE_15596 Chr9 6224247 6224248 - SZ-62LTR 3649 0.0007 (2/2960) 0 * Os_TE_15595 Os_TE_15595 Chr9 6224243 6224242 + SZ-62LTR 3649 0.0007 (2/2961) 0 * Os_TE_15596 Os_TE_15594 Chr9 6223899 6223900 - RIRE2_LTR 11306 0.0565 (167/2954) 0 * Os_TE_15593 Os_TE_15593 Chr9 6223895 6223894 - ORSgTERT00201216 11284 0.0559 (165/2953) 0 * Os_TE_15594 Os_TE_15590 Chr9 6222669 6222670 + ORSgTETNOOT01219 231 0.1944 (573/2947) 0 * Os_TE_15589 Os_TE_15589 Chr9 6222663 6222662 + ORSgTETNOOT00908 242 0.1957 (577/2948) 0 * Os_TE_15590 Os_TE_15576 Chr9 6217609 6217608 + ORSgTERTOOT00009 12852 0.0574 (169/2946) 0 * * Os_TE_15574 Chr9 6215530 6215531 + SPMLIKE 10989 0.2300 (634/2757) 0 * * Os_TE_15572 Chr9 6215236 6215235 + TRUNCATOR 2918 0.0021 (6/2820) 0 * * Os_TE_15563 Chr9 6214184 6214183 + ORSiTERTOOT00027 10853 0.0010 (3/2937) 0 * * Os_TE_15545 Chr9 6211914 6211915 + AMYLTP 383 0.0148 (43/2901) 0 * * Os_TE_15533 Chr9 6207437 6207436 - F524 291 0.0015 (4/2704) 0 * * Os_TE_15526 Chr9 6202900 6202679 - DITAILA 257 0.6697 (1965/2934) 1 Intact * Os_TE_15518 Chr9 6200759 6200758 - TELIA 141 0.0005 (1/2026) 0 * * Os_TE_15472 Chr9 6193083 6192863 - ORSgTEMT01602256 235 0.7905 (1849/2339) 1 Intact * Os_TE_15464 Chr9 6191587 6191586 + TRUNCATOR 2918 0.2763 (826/2990) 0 * Os_TE_15463 Os_TE_15463 Chr9 6191586 6191587 - TRUNCATOR 2918 0.2654 (784/2954) 0 * Os_TE_15464 Os_TE_15460 Chr9 6191194 6191193 + RIREX_LTR 8828 0.0766 (151/1970) 0 * * Os_TE_15451 Chr9 6185273 6185274 - SZ-62LTR 3649 0.0028 (5/1760) 0 * * Os_TE_15422 Chr9 6172948 6172947 - RETROSAT2LTR 12796 0.0092 (18/1962) 0 * * Os_TE_15415 Chr9 6166680 6166681 - TYPEM 227 0.0289 (43/1486) -1 * * Os_TE_15389 Chr9 6153531 6153530 + SEVERIN-2 1952 0.5673 (1146/2020) 0 * * Os_TE_15357 Chr9 6122494 6122493 + TREP215 239 0.2984 (786/2634) 0 * * Os_TE_15355 Chr9 6122447 6122446 + RETROSAT2LTR 12796 0.0010 (3/2912) 0 * * Os_TE_15353 Chr9 6122202 6122203 + RIRE3_LTR 12054 0.2960 (820/2770) 0 * Os_TE_15352 Os_TE_15352 Chr9 6122198 6122197 - RIRE3_LTR 12054 0.3042 (861/2830) 0 * Os_TE_15353 Os_TE_15348 Chr9 6117541 6117542 - COPI2_LTR 4733 0.0071 (21/2970) 0 * Os_TE_15347 Os_TE_15347 Chr9 6117537 6117536 + COPI2_LTR 4733 0.0067 (20/2975) 0 * Os_TE_15348 Os_TE_15346 Chr9 6117077 6117078 + DS-RICE2N 613 0.0067 (20/2968) 0 * Os_TE_15345 Os_TE_15345 Chr9 6117070 6117069 - DS-RICE2N 613 0.0067 (20/2967) 0 * Os_TE_15346 Os_TE_15344 Chr9 6116973 6116974 + SPMLIKE 10989 0.0007 (2/2963) 0 * * Os_TE_15309 Chr9 6108441 6108442 + TRUNCATOR 2918 0.0107 (31/2903) 0 * * Os_TE_15304 Chr9 6104381 6104382 - TRUNCATOR 2918 0.0111 (29/2614) 0 * * Os_TE_15288 Chr9 6100573 6100574 - COPIA2-LTR_OS 6433 0.0010 (3/2941) 0 * * Os_TE_15277 Chr9 6095745 6095382 - ORSgTEMT00600085 364 0.2031 (604/2974) 1 Intact * Os_TE_15271 Chr9 6091759 6091758 - ORSgTETN00200001 10994 0.0446 (133/2979) 0 * * Os_TE_15260 Chr9 6088296 6088295 - ORSiTETNOOT00107 906 0.0124 (37/2978) 0 * Os_TE_15259 Os_TE_15259 Chr9 6088292 6088293 + ORSiTETNOOT00107 906 0.0125 (37/2961) 0 * Os_TE_15260 Os_TE_15243 Chr9 6080803 6080804 - ORSgTETN00200001 10994 0.0365 (109/2990) 0 * Os_TE_15242 Os_TE_15242 Chr9 6080801 6080800 + SPMLIKE 10989 0.0391 (117/2993) 0 * Os_TE_15243 Os_TE_15226 Chr9 6077981 6077980 - ORSgTETN00200001 10994 0.0003 (1/2978) 0 * * Os_TE_15219 Chr9 6076083 6076082 - ORSgTETNOOT01706 255 0.0003 (1/2947) 0 * * Os_TE_15214 Chr9 6073507 6073508 - RIRE2_LTR 11306 0.1639 (489/2983) 0 * Os_TE_15213 Os_TE_15213 Chr9 6073503 6073502 + RIRE2_LTR 11306 0.1635 (488/2985) 0 * Os_TE_15214 Os_TE_15198 Chr9 6065151 6065150 + STOWAWAY51_OS 246 0.0637 (188/2952) 0 * Os_TE_15197 Os_TE_15197 Chr9 6065145 6065146 - STOWAWAY51_OS 246 0.0648 (190/2931) 0 * Os_TE_15198 Os_TE_15167 Chr9 6059525 6059524 - ORSgTETN00200001 10994 0.0004 (1/2784) 0 * * Os_TE_15134 Chr9 6046699 6046700 - MPING 430 0.0003 (1/2993) 0 * * Os_TE_15130 Chr9 6043918 6043917 - MUDRN1_OS 764 0.0050 (15/2975) 0 * * Os_TE_15122 Chr9 6032084 6032085 - COPI2_LTR 4733 0.0017 (5/2979) 0 * Os_TE_15121 Os_TE_15121 Chr9 6032080 6032079 + COPI2_LTR 4733 0.0013 (4/2974) 0 * Os_TE_15122 Os_TE_15111 Chr9 6028151 6028152 - AMYLTP 383 0.0358 (107/2988) 0 * Os_TE_15110 Os_TE_15110 Chr9 6028143 6028142 + AMYLTP 383 0.0364 (109/2991) 0 * Os_TE_15111 Os_TE_15102 Chr9 6024515 6024516 + OSTE15 1168 0.1157 (344/2973) 0 * Os_TE_15101 Os_TE_15101 Chr9 6024514 6024513 + OSTE15 1168 0.1090 (322/2953) 0 * Os_TE_15102 Os_TE_15091 Chr9 6016268 6016269 + MERMITEB 1610 0.0017 (5/2957) 0 * Os_TE_15090 Os_TE_15090 Chr9 6016264 6016263 + MERMITEB 1610 0.0017 (5/2959) 0 * Os_TE_15091 Os_TE_15071 Chr9 6011464 6011465 - TELIA 141 0.0003 (1/2961) 0 * Os_TE_15070 Os_TE_15070 Chr9 6011456 6011455 + TELIA 141 0.0003 (1/2969) 0 * Os_TE_15071 Os_TE_15068 Chr9 6010980 6010981 - COPIA2-LTR_OS 6433 0.0003 (1/2975) 0 * Os_TE_15067 Os_TE_15067 Chr9 6010976 6010975 + COPIA2-LTR_OS 6433 0.0003 (1/2978) 0 * Os_TE_15068 Os_TE_15066 Chr9 6010783 6010782 - ORSgTEMT01400012 212 0.0007 (2/2965) 0 * * Os_TE_15045 Chr9 5988633 5988632 - RETROSAT2LTR 12796 0.1373 (355/2586) 0 * * Os_TE_15037 Chr9 5979847 5979848 + INDITTO 263 0.1267 (345/2724) 0 * Os_TE_15036 Os_TE_15036 Chr9 5979845 5979844 - INDITTO 263 0.1261 (342/2713) 0 * Os_TE_15037 Os_TE_15035 Chr9 5979755 5979754 + ORSgTEMT00100531 325 0.0508 (138/2717) 0 * * Os_TE_14983 Chr9 5957587 5957586 + Cassandra_OS-LTR 764 0.0121 (20/1655) 0 * * Os_TE_14965 Chr9 5948542 5948543 - RETROSAT2LTRA 3112 0.0958 (184/1921) 0 * * Os_TE_14940 Chr9 5933881 5932647 - ORSgTETN00200001 10994 0.3031 (900/2969) 1 Intact Os_TE_14939 Os_TE_14939 Chr9 5932643 5933882 + CACTA-B 1103 0.3070 (914/2977) 1 Intact Os_TE_14940 Os_TE_14938 Chr9 5932202 5932201 + ORSgTETNOOT00908 242 0.0003 (1/2985) 0 * * Os_TE_14926 Chr9 5924015 5924016 + SEVERIN-2 1952 0.0004 (1/2804) 0 * * Os_TE_14909 Chr9 5912608 5912609 - RETRO2_LTR 12874 0.0476 (142/2986) 0 * Os_TE_14908 Os_TE_14908 Chr9 5912604 5912603 + ORSgTERTOOT00009 12852 0.0497 (137/2754) 0 * Os_TE_14909 Os_TE_14907 Chr9 5912342 5912343 - COPI2_LTR 4733 0.0007 (2/2989) 0 * Os_TE_14906 Os_TE_14906 Chr9 5912338 5912337 + COPI2_LTR 4733 0.0007 (2/2993) 0 * Os_TE_14907 Os_TE_14905 Chr9 5911688 5911687 - COPI2_LTR 4733 0.0003 (1/2976) 0 * * Os_TE_14903 Chr9 5911398 5911399 + RIREX_LTR 8828 0.0472 (141/2985) 0 * Os_TE_14902 Os_TE_14902 Chr9 5911394 5911393 - RIREX_LTR 8828 0.0469 (140/2988) 0 * Os_TE_14903 Os_TE_14897 Chr9 5908581 5908582 - RIRE3_LTR 12054 0.0381 (114/2993) 0 * Os_TE_14896 Os_TE_14896 Chr9 5908577 5908576 + RIRE3_LTR 12054 0.0372 (111/2984) 0 * Os_TE_14897 Os_TE_14889 Chr9 5905734 5905735 + MuDR2_OS 6770 0.0340 (99/2915) 0 * Os_TE_14888 Os_TE_14888 Chr9 5905726 5905725 - MuDR2_OS 6770 0.0342 (100/2921) 0 * Os_TE_14889 Os_TE_14883 Chr9 5899833 5899834 + ORSiCMCM00100019 2717 0.0431 (129/2993) 0 * Os_TE_14882 Os_TE_14882 Chr9 5899829 5899828 - TRUNCATOR2_LTR 2904 0.0434 (130/2996) 0 * Os_TE_14883 Os_TE_14803 Chr9 5879258 5879259 + ORSgTEMT01601463 239 0.0003 (1/2927) 0 * * Os_TE_14793 Chr9 5874031 5874030 + JOUZHENA 607 0.0011 (3/2833) 0 * Os_TE_14792 Os_TE_14792 Chr9 5874029 5874030 - JOUZHENA 607 0.0010 (3/2876) 0 * Os_TE_14793 Os_TE_14790 Chr9 5873213 5873214 + RIRE2_LTR 11306 0.0037 (11/2957) 0 * Os_TE_14789 Os_TE_14789 Chr9 5873209 5873208 - RIRE2_LTR 11306 0.0037 (11/2956) 0 * Os_TE_14790 Os_TE_14786 Chr9 5872553 5872554 + RIREX_LTR 8828 0.0003 (1/2980) 0 * Os_TE_14785 Os_TE_14785 Chr9 5872549 5872548 - RIREX_LTR 8828 0.0003 (1/2975) 0 * Os_TE_14786 Os_TE_14783 Chr9 5870635 5870634 - ORSiTERT00100062 5674 0.0013 (4/2975) 0 * * Os_TE_14725 Chr9 5853356 5853357 + RETROSAT2LTR 12796 0.6439 (1877/2915) 0 * * Os_TE_14713 Chr9 5852071 5852072 + F804 170 0.0014 (4/2958) 0 * Os_TE_14712 Os_TE_14712 Chr9 5852062 5852061 - F804 170 0.0014 (4/2948) 0 * Os_TE_14713 Os_TE_14701 Chr9 5845718 5845717 - TEMPINDAS 4259 0.0043 (12/2802) 0 * * Os_TE_14694 Chr9 5843997 5843998 + TWIF 586 0.0224 (65/2908) 0 * Os_TE_14693 Os_TE_14693 Chr9 5843990 5843989 - ORSiTETNOOT00134 607 0.0213 (61/2866) 0 * Os_TE_14694 Os_TE_14688 Chr9 5840842 5840843 + ORSiTERTOOT00296 5553 0.0007 (2/2982) 0 * Os_TE_14687 Os_TE_14687 Chr9 5840838 5840837 - SC-3_LTR 5748 0.0010 (3/2981) 0 * Os_TE_14688 Os_TE_14635 Chr9 5825535 5825534 - RETROSAT2LTR 12796 0.0095 (28/2932) 0 * * Os_TE_14621 Chr9 5817667 5817666 - ENSPM4_OS 11610 0.0128 (35/2725) 0 * * Os_TE_14617 Chr9 5817048 5817049 + COPIA2-LTR_OS 6433 0.0003 (1/2973) 0 * * Os_TE_14605 Chr9 5814346 5814345 - ORSiTEMT01000007 186 0.0238 (68/2862) 0 * * Os_TE_14594 Chr9 5812932 5812931 + ORSgTEMT02000081 196 0.0011 (3/2801) 0 * * Os_TE_14577 Chr9 5799408 5799407 + NDNA1TNA_OS 334 0.0831 (228/2744) 0 * * Os_TE_14571 Chr9 5795491 5795492 - SC-7_LTR 4431 0.5953 (1783/2995) 0 * * Os_TE_14558 Chr9 5791245 5791246 - RETRO1_LTR 8314 0.0015 (4/2605) 0 * Os_TE_14557 Os_TE_14557 Chr9 5791241 5791240 + RETRO1_LTR 8314 0.0014 (4/2775) 0 * Os_TE_14558 Os_TE_14551 Chr9 5790554 5790555 - RIRE2_LTR 11306 0.0123 (35/2848) 0 * Os_TE_14550 Os_TE_14550 Chr9 5790550 5790549 + RIRE2_LTR 11306 0.0148 (42/2832) 0 * Os_TE_14551 Os_TE_14537 Chr9 5778891 5778892 + ORSgTEMT00101583 342 0.0030 (9/2978) 0 * * Os_TE_14532 Chr9 5775487 5775488 - ORSiTERTOOT00274 4749 0.7633 (2286/2995) 0 * * Os_TE_14529 Chr9 5774245 5774244 + ORSiTERT00100071 4657 0.7605 (2271/2986) 0 * * Os_TE_14528 Chr9 5773432 5773431 - SZ-62LTR 3649 0.0284 (85/2993) 0 * * Os_TE_14527 Chr9 5772085 5772084 + TRUNCATOR 2918 0.0233 (69/2965) 0 * Os_TE_14526 Os_TE_14526 Chr9 5772084 5772085 - TRUNCATOR 2918 0.0232 (68/2933) 0 * Os_TE_14527 Os_TE_14523 Chr9 5767724 5767723 + ORSgTETNOOT01930 140 0.7630 (2276/2983) 0 * Os_TE_14522 Os_TE_14522 Chr9 5767723 5767724 + ORSgTEMT00502327 143 0.7623 (2270/2978) 0 * Os_TE_14523 Os_TE_14436 Chr9 5703992 5682679 - COPIO_LTR 11693 0.2479 (735/2965) 1 Intact Os_TE_14408 Os_TE_14408 Chr9 5682679 5703990 + COPIO_LTR 11693 0.2492 (737/2958) 1 Intact Os_TE_14436 Os_TE_14405 Chr9 5681237 5681236 + DITTO3 260 0.7601 (2269/2985) 0 * * Os_TE_14403 Chr9 5680515 5680514 - OSMAR1 5265 0.7579 (2241/2957) 0 * Os_TE_14402 Os_TE_14402 Chr9 5680512 5680513 + TREP220 109 0.7561 (2223/2940) 0 * Os_TE_14403 Os_TE_14399 Chr9 5678656 5678408 + ORSgTEMT00901212 247 0.2605 (736/2825) 1 Intact Os_TE_14395 Os_TE_14395 Chr9 5678407 5678656 + ORSgTEMT00900319 250 0.2463 (738/2996) 1 Intact Os_TE_14399 Os_TE_14392 Chr9 5677250 5677251 + ORSgTETNOOT00908 242 0.0004 (1/2756) 0 * * Os_TE_14344 Chr9 5666657 5666656 - COPIA2-LTR_OS 6433 0.0004 (1/2816) 0 * * Os_TE_14343 Chr9 5666541 5666540 + ORSgTEMT01601122 212 0.7458 (2150/2883) 0 * Os_TE_14342 Os_TE_14342 Chr9 5666540 5666541 + STOWAWAY21_OS 243 0.7352 (2046/2783) 0 * Os_TE_14343 Os_TE_14341 Chr9 5666500 5666501 + AMYLTP 383 0.0004 (1/2386) 0 * * Os_TE_14340 Chr9 5666469 5666246 - ORSgTEMT01600650 234 0.3078 (816/2651) 1 Intact * Os_TE_14335 Chr9 5666206 5666207 - AMYLTP 383 0.0651 (158/2426) 0 * Os_TE_14334 Os_TE_14334 Chr9 5666198 5666197 + AMYLTP 383 0.0521 (91/1748) 0 * Os_TE_14335 Os_TE_14333 Chr9 5666162 5659545 + SETARIA2 1142 0.2553 (659/2581) 1 Intact Os_TE_14325 Os_TE_14325 Chr9 5659544 5666160 + SETARIA1 1293 0.2722 (730/2682) 1 Intact Os_TE_14333 Os_TE_14316 Chr9 5654310 5654311 + OSTE20 496 0.0003 (1/2879) 0 * * Os_TE_14307 Chr9 5650654 5650655 - MERMITE18B 1306 0.0004 (1/2698) 0 * * Os_TE_14306 Chr9 5650343 5649239 + RETRO2_LTR 12874 0.2549 (675/2648) 1 Solo_LTR * Os_TE_14294 Chr9 5645590 5645591 + RIREX_LTR 8828 0.0003 (1/2976) 0 * * Os_TE_14277 Chr9 5640240 5640241 + RIRE2_LTR 11306 0.0608 (177/2912) 0 * Os_TE_14276 Os_TE_14276 Chr9 5640236 5640235 - RIRE2_LTR 11306 0.0608 (177/2909) 0 * Os_TE_14277 Os_TE_14275 Chr9 5640053 5640054 - INDITTO 263 0.0655 (196/2991) 0 * * Os_TE_14243 Chr9 5629547 5629548 - SZ-36LTR 5825 0.0013 (4/2976) 0 * Os_TE_14242 Os_TE_14242 Chr9 5629543 5629542 + ORSiCMCM00100017 5674 0.0013 (4/2982) 0 * Os_TE_14243 Os_TE_14241 Chr9 5628638 5628360 - SUSU 279 0.3290 (979/2976) 1 Intact Os_TE_14239 Os_TE_14239 Chr9 5628360 5628638 + ORSgTEMT05000092 279 0.3225 (963/2986) 1 Intact Os_TE_14241 Os_TE_14211 Chr9 5618360 5618361 - RETROSAT2LTR 12796 0.0144 (43/2979) 0 * * Os_TE_14204 Chr9 5617101 5617100 - ENSPM4_OS 11610 0.0594 (177/2982) 0 * * Os_TE_14203 Chr9 5616552 5616553 + F569 228 0.0013 (4/2995) 0 * * Os_TE_14195 Chr9 5615230 5615231 + SPMLIKE 10989 0.0248 (72/2903) 0 * Os_TE_14194 Os_TE_14194 Chr9 5615228 5615227 - ORSgTETN00200001 10994 0.0136 (39/2859) 0 * Os_TE_14195 Os_TE_14131 Chr9 5586257 5586099 - ORSiTEMT02000002 181 0.8698 (2571/2956) 1 Intact * Os_TE_14039 Chr9 5537863 5537864 + RIRE3A_LTR 10580 0.0083 (20/2417) 0 * Os_TE_14038 Os_TE_14038 Chr9 5537859 5537858 - RIRE3A_LTR 10580 0.0075 (18/2410) 0 * Os_TE_14039 Os_TE_14037 Chr9 5537831 5537832 + COPIA1-LTR_OS 9292 0.0008 (2/2422) 0 * * Os_TE_13960 Chr9 5490902 5490903 - RIREX_LTR 8828 0.0090 (22/2442) 0 * Os_TE_13959 Os_TE_13959 Chr9 5490898 5490897 + RIREX_LTR 8828 0.0086 (21/2429) 0 * Os_TE_13960 Os_TE_13937 Chr9 5480888 5480889 - COPIA2-LTR_OS 6433 0.0004 (1/2405) 0 * Os_TE_13936 Os_TE_13936 Chr9 5480884 5480883 + COPIA2-LTR_OS 6433 0.0004 (1/2402) 0 * Os_TE_13937 Os_TE_13896 Chr9 5455055 5455056 + ORSgTEMT00101674 340 0.1499 (439/2929) 0 * * Os_TE_13891 Chr9 5451937 5451936 + GYPSY-A_LTR 8951 0.0010 (3/2996) 0 * * Os_TE_13889 Chr9 5451652 5451651 - TRUNCATOR2_LTR 2904 0.0003 (1/2989) 0 * * Os_TE_13881 Chr9 5445142 5444866 - STOLAB 312 0.4729 (1354/2863) 1 Intact * Os_TE_13876 Chr9 5442955 5434365 - MuDR3_OS 8604 0.4237 (1196/2823) 1 Intact Os_TE_13866 Os_TE_13866 Chr9 5434361 5442953 - MuDR3_OS 8604 0.4575 (1341/2931) 1 Intact Os_TE_13876 Os_TE_13865 Chr9 5434172 5434171 + TRUNCATOR 2918 0.0007 (2/2992) 0 * * Os_TE_13810 Chr9 5416142 5416143 - OSTE20 496 0.0197 (59/2993) 0 * Os_TE_13809 Os_TE_13809 Chr9 5416138 5416137 - OSTE20 496 0.0178 (53/2981) 0 * Os_TE_13810 Os_TE_13806 Chr9 5413327 5413328 + SZ-9LTR 965 0.0100 (30/2986) 0 * Os_TE_13805 Os_TE_13805 Chr9 5413323 5413322 - SZ-9LTR 965 0.0104 (31/2990) 0 * Os_TE_13806 Os_TE_13800 Chr9 5411102 5411344 - DITTO-2 235 0.4539 (1355/2985) 1 Intact * Os_TE_13799 Chr9 5411069 5411070 - OSTE33 1012 0.0097 (29/2986) 0 * Os_TE_13798 Os_TE_13798 Chr9 5411060 5411059 - OSTE33 1012 0.0101 (30/2956) 0 * Os_TE_13799 Os_TE_13797 Chr9 5410692 5410691 + SPMLIKE 10989 0.0010 (3/2982) 0 * Os_TE_13796 Os_TE_13796 Chr9 5410690 5410691 - ORSgTETN00200001 10994 0.0010 (3/2991) 0 * Os_TE_13797 Os_TE_13779 Chr9 5402925 5402924 + MPING 430 0.0010 (1/1046) 0 * * Os_TE_13776 Chr9 5401541 5401542 - RETROSAT3_LTR 11537 0.0165 (49/2961) 0 * Os_TE_13775 Os_TE_13775 Chr9 5401537 5401536 + RETROSAT2LTRA 3112 0.0150 (45/2993) 0 * Os_TE_13776 Os_TE_13771 Chr9 5398903 5398904 + F524 291 0.5553 (1652/2975) 0 * Os_TE_13770 Os_TE_13770 Chr9 5398891 5398890 - F524 291 0.5591 (1669/2985) 0 * Os_TE_13771 Os_TE_13769 Chr9 5398344 5398345 - MPING 430 0.0003 (1/2973) 0 * Os_TE_13768 Os_TE_13768 Chr9 5398342 5398341 + MPING 430 0.0003 (1/2974) 0 * Os_TE_13769 Os_TE_13766 Chr9 5394462 5394463 + CACTA-H 1152 0.0010 (3/2994) 0 * Os_TE_13765 Os_TE_13765 Chr9 5394460 5394459 - ORSgTETN00200001 10994 0.0010 (3/2996) 0 * Os_TE_13766 Os_TE_13763 Chr9 5393642 5393643 - MuDR4_OS 7610 0.0090 (27/2989) 0 * Os_TE_13762 Os_TE_13762 Chr9 5393635 5393634 - MuDR4_OS 7610 0.0100 (30/2989) 0 * Os_TE_13763 Os_TE_13761 Chr9 5393318 5393319 - ORSgTETN00200001 10994 0.0657 (196/2981) 0 * Os_TE_13760 Os_TE_13760 Chr9 5393316 5393315 + SPMLIKE 10989 0.0692 (207/2991) 0 * Os_TE_13761 Os_TE_13749 Chr9 5391396 5391395 - RETRO2_LTR 12874 0.0010 (3/2922) 0 * * Os_TE_13747 Chr9 5390309 5390310 + COPI2_LTR 4733 0.0003 (1/2927) 0 * Os_TE_13746 Os_TE_13746 Chr9 5390305 5390304 - COPI2_LTR 4733 0.0003 (1/2911) 0 * Os_TE_13747 Os_TE_13731 Chr9 5382457 5382456 - ORSgTEMT02900061 318 0.7145 (2037/2851) 0 * * Os_TE_13729 Chr9 5380493 5372733 - ENSPM3_OS 10837 0.2607 (766/2938) 1 Intact Os_TE_13722 Os_TE_13722 Chr9 5372733 5380493 + ENSPM3_OS 10837 0.2599 (765/2944) 1 Intact Os_TE_13729 Os_TE_13717 Chr9 5371545 5371546 - SC-6_LTR 6317 0.0251 (75/2988) 0 * Os_TE_13716 Os_TE_13716 Chr9 5371541 5371540 + SC-6_LTR 6317 0.0251 (75/2987) 0 * Os_TE_13717 Os_TE_13715 Chr9 5371456 5371457 - RIRE3A_LTR 10580 0.0017 (5/2982) 0 * Os_TE_13714 Os_TE_13714 Chr9 5371452 5371451 + RIRE3A_LTR 10580 0.0017 (5/2980) 0 * Os_TE_13715 Os_TE_13713 Chr9 5371300 5370414 - COPIA2-LTR_OS 6433 0.2634 (775/2942) 1 Solo_LTR * Os_TE_13708 Chr9 5370108 5366491 + SEVERIN-2 1952 0.2603 (766/2943) 1 Intact * Os_TE_13698 Chr9 5365432 5354165 - ORSgTERT00201216 11284 0.2562 (764/2982) 1 Intact Os_TE_13687 Os_TE_13687 Chr9 5354165 5365432 - RIRE2_LTR 11306 0.2553 (757/2965) 1 Intact Os_TE_13698 Os_TE_13674 Chr9 5352215 5352216 + COPIA2-LTR_OS 6433 0.0027 (8/2943) 0 * Os_TE_13673 Os_TE_13673 Chr9 5352211 5352210 - COPIA2-LTR_OS 6433 0.0024 (7/2936) 0 * Os_TE_13674 Os_TE_13671 Chr9 5350339 5350340 - TRUNCATOR2_LTR 2904 0.0198 (59/2986) 0 * Os_TE_13670 Os_TE_13670 Chr9 5350335 5350334 + ORSiCMCM00100019 2717 0.0177 (53/2987) 0 * Os_TE_13671 Os_TE_13668 Chr9 5348719 5348720 + RIRE3_LTR 12054 0.6463 (1915/2963) 0 * Os_TE_13667 Os_TE_13667 Chr9 5348715 5348714 - RIRE3_LTR 12054 0.6520 (1950/2991) 0 * Os_TE_13668 Os_TE_13620 Chr9 5338591 5338592 - ORSgTETN00200001 10994 0.0007 (2/2904) 0 * Os_TE_13619 Os_TE_13619 Chr9 5338589 5338588 + SPMLIKE 10989 0.0014 (4/2774) 0 * Os_TE_13620 Os_TE_13558 Chr9 5321773 5321620 + ORSgTEMT01701101 133 0.3995 (1190/2979) 1 Intact * Os_TE_13555 Chr9 5321295 5321296 - SZ-37_LTR 12001 0.5977 (1741/2913) 0 * Os_TE_13554 Os_TE_13554 Chr9 5321291 5321290 + SZ-37_LTR 12001 0.5910 (1753/2966) 0 * Os_TE_13555 Os_TE_13553 Chr9 5320924 5320925 - SZ-7A_LTR 11400 0.0182 (54/2960) 0 * * Os_TE_13534 Chr9 5311219 5311218 + ORSgTEMT05200196 285 0.0181 (47/2599) 0 * * Os_TE_13532 Chr9 5311191 5311190 - OSTE21 1271 0.5560 (1474/2651) 0 * Os_TE_13531 Os_TE_13531 Chr9 5311183 5311184 + OSTE21 1271 0.5960 (1742/2923) 0 * Os_TE_13532 Os_TE_13530 Chr9 5311172 5311173 + ORSiTERTOOT00226 792 0.0007 (1/1371) 0 * Os_TE_13529 Os_TE_13529 Chr9 5311168 5311167 + ORSiTERTOOT00226 792 0.0008 (1/1259) 0 * Os_TE_13530 Os_TE_13523 Chr9 5307617 5307616 - ORSgTETNOOT00477 252 0.0190 (57/2995) 0 * * Os_TE_13519 Chr9 5304891 5304892 - SZ-40LTR 2465 0.0017 (5/2984) 0 * Os_TE_13518 Os_TE_13518 Chr9 5304887 5304886 + GYPSY-A_LTR 8951 0.0017 (5/2959) 0 * Os_TE_13519 Os_TE_13517 Chr9 5304776 5280272 - RETRO2_LTR 12874 0.2577 (756/2934) 1 Intact Os_TE_13487 Os_TE_13487 Chr9 5280272 5304776 + RETRO2_LTR 12874 0.2573 (769/2989) 1 Intact Os_TE_13517 Os_TE_13483 Chr9 5278405 5278406 + SZ-59_LTR 5600 0.0010 (3/2986) 0 * Os_TE_13482 Os_TE_13482 Chr9 5278401 5278400 - SZ-59_LTR 5600 0.0010 (3/2991) 0 * Os_TE_13483 Os_TE_13475 Chr9 5275522 5275723 - ORSgTEMT01400022 212 0.3366 (1006/2989) 1 Intact * Os_TE_13474 Chr9 5275241 5274826 + ORSgTEMT00300122 416 0.3329 (990/2974) 1 Intact * Os_TE_13462 Chr9 5271220 5272424 - SZ-30_LTR 6377 0.3458 (1030/2979) 1 Solo_LTR * Os_TE_13395 Chr9 5245652 5259512 + ATLANTYS-LTR_OS 13740 0.3392 (999/2945) 1 Intact * Os_TE_13393 Chr9 5245440 5245441 - ORSgTERT00200284 429 0.6512 (1889/2901) 0 * * Os_TE_13384 Chr9 5242098 5242099 + ORSgTEMT01400012 212 0.0273 (29/1062) 0 * * Os_TE_13383 Chr9 5241506 5241330 - ORSgTEMT02000010 196 0.6286 (995/1583) 1 Intact * Os_TE_13381 Chr9 5239544 5239543 - ORSgTEMT00900741 219 0.0252 (29/1153) 0 * * Os_TE_13380 Chr9 5238587 5238588 - ORSiCMCM00100013 9728 0.0014 (4/2774) 0 * * Os_TE_13379 Chr9 5238494 5238493 + TRUNCATOR 2918 0.0007 (2/2791) 0 * Os_TE_13378 Os_TE_13378 Chr9 5238493 5238494 - TRUNCATOR 2918 0.0007 (2/2790) 0 * Os_TE_13379 Os_TE_13347 Chr9 5214163 5214162 + STOWAWAY45_OS 266 0.0011 (3/2763) 0 * * Os_TE_13332 Chr9 5211274 5211275 - ORSgTETN00200001 10994 0.0088 (26/2962) 0 * * Os_TE_13331 Chr9 5211272 5211271 - TEMPINDAS 4259 0.0010 (3/2952) 0 * * Os_TE_13264 Chr9 5186525 5186524 + MUDRN1_OS 764 0.0710 (210/2959) 0 * * Os_TE_13248 Chr9 5178289 5178290 + MuDR2_OS 6770 0.0044 (13/2957) 0 * Os_TE_13247 Os_TE_13247 Chr9 5178280 5178279 - MuDR2_OS 6770 0.0044 (13/2960) 0 * Os_TE_13248 Os_TE_13246 Chr9 5177985 5177986 - MuDR4_OS 7610 0.0036 (10/2812) 0 * Os_TE_13245 Os_TE_13245 Chr9 5177978 5177977 - MuDR4_OS 7610 0.0039 (11/2800) 0 * Os_TE_13246 Os_TE_13233 Chr9 5174229 5174228 - TRUNCATOR 2918 0.5432 (1610/2964) 0 * Os_TE_13232 Os_TE_13232 Chr9 5174227 5174228 + TRUNCATOR 2918 0.5496 (1634/2973) 0 * Os_TE_13233 Os_TE_13205 Chr9 5163890 5163889 - COPI2_LTR 4733 0.0007 (2/2955) 0 * * Os_TE_13202 Chr9 5163111 5163110 + ENSPM6_OS 9815 0.0062 (18/2902) 0 * * Os_TE_13196 Chr9 5160749 5160750 - ORSgTETN00200001 10994 0.0179 (52/2911) 0 * Os_TE_13195 Os_TE_13195 Chr9 5160747 5160746 + SPMLIKE 10989 0.0185 (54/2912) 0 * Os_TE_13196 Os_TE_13193 Chr9 5159930 5159931 + COPIA2-LTR_OS 6433 0.0003 (1/2953) 0 * Os_TE_13192 Os_TE_13192 Chr9 5159926 5159925 - COPIA2-LTR_OS 6433 0.0003 (1/2955) 0 * Os_TE_13193 Os_TE_13188 Chr9 5155358 5155359 - ORSgTETN00200001 10994 0.0068 (20/2926) 0 * Os_TE_13187 Os_TE_13187 Chr9 5155356 5155355 + SPMLIKE 10989 0.0069 (20/2913) 0 * Os_TE_13188 Os_TE_13176 Chr9 5152009 5152010 - RIREX_LTR 8828 0.0081 (24/2975) 0 * * Os_TE_13161 Chr9 5146846 5145487 + OSTE33 1012 0.4240 (1216/2868) 1 Intact Os_TE_13160 Os_TE_13160 Chr9 5145487 5146846 + OSTE33 1012 0.4406 (1290/2928) 1 Intact Os_TE_13161 Os_TE_13133 Chr9 5140966 5140967 + CACTA-M 1129 0.0318 (93/2920) 0 * Os_TE_13132 Os_TE_13132 Chr9 5140964 5140963 - ORSgTETN00200001 10994 0.0341 (100/2929) 0 * Os_TE_13133 Os_TE_13125 Chr9 5139428 5139427 + RETROSAT2LTRA 3112 0.0346 (103/2978) 0 * * Os_TE_13117 Chr9 5136374 5136375 - RETRO2_LTR 12874 0.5742 (1717/2990) 0 * * Os_TE_13114 Chr9 5135481 5135482 + COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * * Os_TE_13097 Chr9 5124777 5124776 + COPIA2-LTR_OS 6433 0.0004 (1/2639) 0 * * Os_TE_13096 Chr9 5124618 5124075 - CLOUD-7 495 0.7944 (1936/2437) 1 Intact Os_TE_13095 Os_TE_13095 Chr9 5124075 5124617 - CLOUD-7 495 0.8087 (2237/2766) 1 Intact Os_TE_13096 Os_TE_13093 Chr9 5123879 5123880 + ORSgTETNOOT00908 242 0.1931 (566/2931) 0 * * Os_TE_13092 Chr9 5123549 5123550 - CACTA-I 1124 0.1776 (519/2923) 0 * Os_TE_13091 Os_TE_13091 Chr9 5123547 5123546 + SPMLIKE 10989 0.1929 (573/2970) 0 * Os_TE_13092 Os_TE_13086 Chr9 5120187 5120188 + ORSiTERTOOT00028 8600 0.1841 (334/1814) -1 * * Os_TE_13082 Chr9 5119886 5119887 - ORSiTERT00100062 5674 0.0265 (77/2903) 0 * Os_TE_13081 Os_TE_13081 Chr9 5119882 5119881 + OSTONOR1_LTR 6440 0.0200 (58/2899) 0 * Os_TE_13082 Os_TE_13080 Chr9 5119489 5119488 + SEVERIN-2 1952 0.1924 (570/2963) 0 * * Os_TE_13079 Chr9 5119001 5119002 - COPIA2-LTR_OS 6433 0.0071 (21/2969) 0 * Os_TE_13078 Os_TE_13078 Chr9 5118997 5118996 + COPIA2-LTR_OS 6433 0.0068 (20/2960) 0 * Os_TE_13079 Os_TE_13046 Chr9 5102487 5102488 - SC-3_LTR 5748 0.0010 (3/2977) 0 * Os_TE_13045 Os_TE_13045 Chr9 5102483 5102482 + ORSiTERTOOT00296 5553 0.0010 (3/2982) 0 * Os_TE_13046 Os_TE_13033 Chr9 5094523 5094524 + STOWAWAY47_OS 148 0.0177 (53/2991) 0 * * Os_TE_13027 Chr9 5093655 5093654 - ORSgTEMT01601208 238 0.1676 (480/2864) 0 * * Os_TE_13024 Chr9 5093635 5093636 + TRUNCATOR 2918 0.0013 (4/2974) 0 * * Os_TE_13022 Chr9 5093120 5093119 + TRUNCATOR 2918 0.0023 (7/2982) 0 * Os_TE_13021 Os_TE_13021 Chr9 5093119 5093120 - TRUNCATOR 2918 0.0017 (5/2961) 0 * Os_TE_13022 Os_TE_13019 Chr9 5092468 5092469 + NDNA1TNA_OS 334 0.0102 (30/2951) 0 * * Os_TE_12992 Chr9 5082355 5072303 - GYPSY-A_LTR 8951 0.8216 (2427/2954) 1 Intact Os_TE_12962 Os_TE_12962 Chr9 5072303 5082355 + GYPSY-A_LTR 8951 0.8258 (2399/2905) 1 Intact Os_TE_12992 Os_TE_12922 Chr9 5038737 5038738 + COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_12921 Os_TE_12921 Chr9 5038733 5038732 - COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_12922 Os_TE_12905 Chr9 5030841 5030842 - RIRE2_LTR 11306 0.1591 (474/2980) 0 * Os_TE_12904 Os_TE_12904 Chr9 5030837 5030836 + RIRE2_LTR 11306 0.1614 (482/2987) 0 * Os_TE_12905 Os_TE_12897 Chr9 5017570 5017571 + ORSiTERTOOT00296 5553 0.0030 (9/2985) 0 * Os_TE_12896 Os_TE_12896 Chr9 5017566 5017565 - SC-3_LTR 5748 0.0030 (9/2985) 0 * Os_TE_12897 Os_TE_12895 Chr9 5016699 5016700 + SC-8_LTR 4951 0.0064 (19/2992) 0 * Os_TE_12894 Os_TE_12894 Chr9 5016695 5016694 - SC-8_LTR 4951 0.0057 (17/2992) 0 * Os_TE_12895 Os_TE_12893 Chr9 5016031 5016032 - SC-3_LTR 5748 0.0003 (1/2995) 0 * * Os_TE_12891 Chr9 5014941 5014942 + SC-8_LTR 4951 0.0010 (3/2993) 0 * Os_TE_12890 Os_TE_12890 Chr9 5014937 5014936 - SC-8_LTR 4951 0.0010 (3/2993) 0 * Os_TE_12891 Os_TE_12889 Chr9 5014024 5014025 + ORSiTERTOOT00296 5553 0.0013 (4/2989) 0 * Os_TE_12888 Os_TE_12888 Chr9 5014020 5014019 - SC-3_LTR 5748 0.0013 (4/2988) 0 * Os_TE_12889 Os_TE_12879 Chr9 5005464 5005465 - SZ-62LTR 3649 0.0003 (1/2978) 0 * Os_TE_12878 Os_TE_12878 Chr9 5005460 5005459 + SZ-62LTR 3649 0.0003 (1/2984) 0 * Os_TE_12879 Os_TE_12877 Chr9 5005417 5005418 - ORSiTERT00100062 5674 0.0184 (55/2991) 0 * Os_TE_12876 Os_TE_12876 Chr9 5005413 5005412 + OSTONOR1_LTR 6440 0.0167 (50/2990) 0 * Os_TE_12877 Os_TE_12871 Chr9 4999492 4999254 + ORSgTEMT01601983 238 0.1181 (312/2642) 1 Intact Os_TE_12870 Os_TE_12870 Chr9 4999254 4999492 - ORSgTEMT01601432 239 0.1420 (390/2747) 1 Intact Os_TE_12871 Os_TE_12865 Chr9 4997200 4997199 + SC-1_LTR 6888 0.0108 (32/2971) 0 * * Os_TE_12859 Chr9 4992506 4992507 + TYPEU4 402 0.0043 (13/2990) 0 * Os_TE_12858 Os_TE_12858 Chr9 4992497 4992496 - TYPEU1 380 0.0043 (13/2990) 0 * Os_TE_12859 Os_TE_12850 Chr9 4990442 4990443 - MPING 430 0.0003 (1/2958) 0 * Os_TE_12849 Os_TE_12849 Chr9 4990440 4990439 + MPING 430 0.0003 (1/2966) 0 * Os_TE_12850 Os_TE_12822 Chr9 4980065 4980064 + INDITTO 263 0.0231 (53/2298) 0 * * Os_TE_12768 Chr9 4964486 4964485 - ORMOSIA 482 0.1546 (449/2904) 0 * * Os_TE_12767 Chr9 4964315 4964074 - ORSgTEMT01602413 239 0.8288 (2202/2657) 1 Intact Os_TE_12764 Os_TE_12764 Chr9 4964074 4964315 + ORSgTEMT01602413 239 0.7580 (2192/2892) 1 Intact Os_TE_12767 Os_TE_12754 Chr9 4961625 4961775 - ORSgTEMT00500439 153 0.7937 (2212/2787) 1 Intact * Os_TE_12743 Chr9 4959750 4948724 - RIRE2_LTR 11306 0.0644 (186/2888) 1 Intact Os_TE_12735 Os_TE_12735 Chr9 4948724 4959750 - ORSgTERT00201216 11284 0.0673 (179/2661) 1 Intact Os_TE_12743 Os_TE_12734 Chr9 4948460 4946495 + SEVERIN-2 1952 0.7503 (2046/2727) 1 Intact * Os_TE_12726 Chr9 4946252 4945158 - CACTA-M 1129 0.7514 (2179/2900) 1 Intact Os_TE_12725 Os_TE_12725 Chr9 4945158 4946252 + CACTA-I 1124 0.7541 (2196/2912) 1 Intact Os_TE_12726 Os_TE_12723 Chr9 4944890 4944539 + ORSgTEMT00100272 356 0.7574 (2213/2922) 1 Intact Os_TE_12719 Os_TE_12719 Chr9 4944537 4944888 - ORSgTEMT00100242 351 0.7576 (2219/2929) 1 Intact Os_TE_12723 Os_TE_12715 Chr9 4938598 4938599 - SPMLIKE 10989 0.0058 (17/2915) 0 * * Os_TE_12701 Chr9 4934348 4934494 + ORSgTEMT00500385 153 0.8668 (2246/2591) 1 Intact * Os_TE_12699 Chr9 4934075 4934074 + OSTONOR1_LTR 6440 0.0010 (3/2942) 0 * * Os_TE_12495 Chr9 4778446 4778445 - RIREX_LTR 8828 0.0110 (29/2646) 0 * * Os_TE_12448 Chr9 4747479 4757359 - ENSPM6_OS 9815 0.2419 (186/769) 1 Intact * Os_TE_12434 Chr9 4742024 4742025 + ORSiTERTOOT00028 8600 0.0004 (1/2450) 0 * Os_TE_12433 Os_TE_12433 Chr9 4742020 4742019 - TRUNCATOR2_LTR 2904 0.0003 (1/2926) 0 * Os_TE_12434 Os_TE_12429 Chr9 4738888 4741606 - SEVERIN-2 1952 0.2163 (580/2682) -1 Intact * Os_TE_12420 Chr9 4733256 4733257 - RIRE2_LTR 11306 0.0013 (4/2988) 0 * Os_TE_12419 Os_TE_12419 Chr9 4733252 4733251 - ORSgTERT00201216 11284 0.0013 (4/2987) 0 * Os_TE_12420 Os_TE_12415 Chr9 4732660 4732661 - ORSgTETNOOT01930 140 0.0017 (1/591) 0 * * Os_TE_12291 Chr9 4651417 4672241 + SPMLIKE 10989 0.2558 (766/2994) 1 Intact * Os_TE_12287 Chr9 4649848 4649849 + MERMITE-18 1263 0.7318 (2033/2778) 0 * * Os_TE_12272 Chr9 4642956 4642957 - ORSgTEMT01700794 153 0.0066 (5/757) 0 * * Os_TE_12271 Chr9 4642601 4642364 + ORSgTEMT01601934 207 0.2566 (762/2970) 1 Intact Os_TE_12268 Os_TE_12268 Chr9 4642364 4642601 - ORSgTEMT01601696 238 0.2557 (752/2941) 1 Intact Os_TE_12271 Os_TE_12267 Chr9 4642063 4642062 - TYPEM 227 0.7654 (2235/2920) 0 * Os_TE_12266 Os_TE_12266 Chr9 4642050 4642051 + ORSgTEMT02400049 221 0.7610 (2216/2912) 0 * Os_TE_12267 Os_TE_12257 Chr9 4640432 4630453 - ENSPM_OS 9843 0.2477 (728/2939) 1 Intact Os_TE_12243 Os_TE_12243 Chr9 4630453 4640431 + ENSPM_OS 9843 0.2501 (729/2915) 1 Intact Os_TE_12257 Os_TE_12236 Chr9 4628103 4627906 - ORSgTEMT02000063 217 0.2541 (759/2987) 1 Intact * Os_TE_12233 Chr9 4625267 4625268 + RIRE3_LTR 12054 0.0120 (36/2996) 0 * Os_TE_12232 Os_TE_12232 Chr9 4625263 4625262 - RIRE3_LTR 12054 0.0133 (40/2997) 0 * Os_TE_12233 Os_TE_12227 Chr9 4623784 4623783 - RIREX_LTR 8828 0.0229 (68/2969) 0 * * Os_TE_12206 Chr9 4603470 4603471 + SPMLIKE 10989 0.1513 (440/2908) 0 * Os_TE_12205 Os_TE_12205 Chr9 4603468 4603467 - ORSgTETN00200001 10994 0.1520 (443/2915) 0 * Os_TE_12206 Os_TE_12198 Chr9 4598699 4598698 - ORSgTEMT02400179 221 0.0651 (193/2963) 0 * Os_TE_12197 Os_TE_12197 Chr9 4598692 4598693 - TYPEM 227 0.0746 (190/2547) 0 * Os_TE_12198 Os_TE_12195 Chr9 4596964 4596963 + ORSgTEMT00500852 140 0.1110 (332/2990) 0 * * Os_TE_12188 Chr9 4595054 4595053 + TEMPINDAS 4259 0.1113 (326/2929) 0 * * Os_TE_12156 Chr9 4583666 4583665 - BAJIELTR 4500 0.1553 (462/2975) 0 * * Os_TE_12151 Chr9 4582344 4582345 - ORSgTEMT00700002 381 0.1541 (458/2973) 0 * * Os_TE_12147 Chr9 4581049 4581050 + RIREX_LTR 8828 0.0109 (28/2561) 0 * Os_TE_12146 Os_TE_12146 Chr9 4581045 4581044 - RIREX_LTR 8828 0.0117 (30/2559) 0 * Os_TE_12147 Os_TE_12093 Chr9 4560831 4560832 + SC-8_LTR 4951 0.0003 (1/2995) 0 * Os_TE_12092 Os_TE_12092 Chr9 4560827 4560826 - SC-8_LTR 4951 0.0003 (1/2996) 0 * Os_TE_12093 Os_TE_12073 Chr9 4548792 4548791 + ORSgTETNOOT00032 218 0.0007 (2/2934) 0 * * Os_TE_12069 Chr9 4546277 4546276 - SZ-9LTR 965 0.0124 (37/2990) 0 * * Os_TE_12067 Chr9 4545984 4545985 + COPI2_LTR 4733 0.0013 (4/2988) 0 * Os_TE_12066 Os_TE_12066 Chr9 4545980 4545979 - COPI2_LTR 4733 0.0013 (4/2977) 0 * Os_TE_12067 Os_TE_12052 Chr9 4543692 4543693 + F569 228 0.0100 (29/2914) 0 * * Os_TE_12050 Chr9 4540691 4540692 + SC-8_LTR 4951 0.0003 (1/2996) 0 * Os_TE_12049 Os_TE_12049 Chr9 4540687 4540686 - SC-8_LTR 4951 0.0003 (1/2998) 0 * Os_TE_12050 Os_TE_12009 Chr9 4507979 4507980 - SZ-9LTR 965 0.1467 (425/2898) 0 * Os_TE_12008 Os_TE_12008 Chr9 4507975 4507974 + SZ-9LTR 965 0.1482 (428/2888) 0 * Os_TE_12009 Os_TE_11986 Chr9 4499195 4499196 - SZ-22_LTR 4403 0.0003 (1/2967) 0 * Os_TE_11985 Os_TE_11985 Chr9 4499191 4499190 + ORSiTERTOOT00226 792 0.0003 (1/2970) 0 * Os_TE_11986 Os_TE_11944 Chr9 4488199 4488513 - MDM2 312 0.0731 (215/2943) 1 Intact * Os_TE_11925 Chr9 4485950 4485949 - ORSiTERT00100062 5674 0.0010 (3/2989) 0 * * Os_TE_11921 Chr9 4484214 4484215 - TRUNCATOR2_LTR 2904 0.0792 (237/2991) 0 * Os_TE_11920 Os_TE_11920 Chr9 4484210 4484209 + TRUNCATOR2_LTR 2904 0.0766 (229/2988) 0 * Os_TE_11921 Os_TE_11877 Chr9 4473100 4473101 + ORSgTEMT00500070 150 0.0020 (6/2948) 0 * Os_TE_11876 Os_TE_11876 Chr9 4473097 4473096 - GAIJIN 147 0.0020 (6/2960) 0 * Os_TE_11877 Os_TE_11875 Chr9 4472927 4472926 + STOWAWAY1_OS 149 0.0017 (5/2936) 0 * Os_TE_11874 Os_TE_11874 Chr9 4472924 4472925 - STOWAWAY1_OS 149 0.0020 (6/2938) 0 * Os_TE_11875 Os_TE_11857 Chr9 4470308 4470307 + ORSgTEMT00500512 153 0.0020 (6/2984) 0 * Os_TE_11856 Os_TE_11856 Chr9 4470307 4470308 - GAIJIN 147 0.0013 (4/2982) 0 * Os_TE_11857 Os_TE_11849 Chr9 4465926 4465925 + ORSgTEMT02000025 197 0.8250 (2437/2954) 0 * * Os_TE_11836 Chr9 4462226 4462225 + MuDR-5_OS 17471 0.1426 (416/2917) 0 * * Os_TE_11822 Chr9 4460871 4459258 + OSMU5 4881 0.3423 (1009/2948) 1 Intact Os_TE_11821 Os_TE_11821 Chr9 4459254 4460875 + OSTE15 1168 0.3590 (1032/2875) 1 Intact Os_TE_11822 Os_TE_11809 Chr9 4456444 4456445 + RIREX_LTR 8828 0.0013 (4/2995) 0 * Os_TE_11808 Os_TE_11808 Chr9 4456440 4456439 - RIREX_LTR 8828 0.0013 (4/2995) 0 * Os_TE_11809 Os_TE_11798 Chr9 4453438 4453193 - ORSgTEMT00900099 250 0.3485 (1042/2990) 1 Intact Os_TE_11796 Os_TE_11796 Chr9 4453189 4453436 + ORSgTEMT00901798 232 0.3452 (1032/2990) 1 Intact Os_TE_11798 Os_TE_11759 Chr9 4443603 4443604 - ORSiTETNOOT00216 3569 0.0087 (26/2985) 0 * Os_TE_11758 Os_TE_11758 Chr9 4443596 4443595 + TWIFBIG 3567 0.0087 (26/2985) 0 * Os_TE_11759 Os_TE_11755 Chr9 4443503 4443504 - ORSiTETNOOT00156 3648 0.0003 (1/2990) 0 * Os_TE_11754 Os_TE_11754 Chr9 4443496 4443495 + TWIF 586 0.0003 (1/2991) 0 * Os_TE_11755 Os_TE_11745 Chr9 4442827 4442828 + STOWAWAY51_OS 246 0.0004 (1/2822) 0 * * Os_TE_11739 Chr9 4436302 4436303 - RIREX_LTR 8828 0.0251 (74/2946) 0 * Os_TE_11738 Os_TE_11738 Chr9 4436298 4436297 + RIREX_LTR 8828 0.0258 (76/2948) 0 * Os_TE_11739 Os_TE_11719 Chr9 4433559 4433558 + SZLTR 1249 0.0246 (73/2969) 0 * * Os_TE_11698 Chr9 4427658 4427659 + TWIFBIG 3567 0.0235 (67/2857) 0 * Os_TE_11697 Os_TE_11697 Chr9 4427651 4427650 - ORSiTETNOOT00199 3501 0.0036 (10/2797) 0 * Os_TE_11698 Os_TE_11692 Chr9 4426532 4426533 + OSTE33 1012 0.0004 (1/2540) 0 * * Os_TE_11671 Chr9 4403301 4403157 - TNR2A 152 0.3223 (958/2972) 1 Intact * Os_TE_11653 Chr9 4399105 4399106 - SZ-40LTR 2465 0.0259 (77/2972) 0 * * Os_TE_11635 Chr9 4394705 4394704 + NDNA1TNA_OS 334 0.0013 (4/2979) 0 * Os_TE_11634 Os_TE_11634 Chr9 4394704 4394705 + ORSgTEMT00100428 339 0.0017 (5/2984) 0 * Os_TE_11635 Os_TE_11632 Chr9 4394018 4394019 + MERMITEB 1610 0.0017 (5/2925) 0 * Os_TE_11631 Os_TE_11631 Chr9 4394014 4394013 + MERMITEB 1610 0.0017 (5/2921) 0 * Os_TE_11632 Os_TE_11625 Chr9 4390108 4390109 + ORSgTETNOOT00908 242 0.0070 (21/2997) 0 * Os_TE_11624 Os_TE_11624 Chr9 4390106 4390105 - ORSgTETNOOT00908 242 0.0067 (20/2999) 0 * Os_TE_11625 Os_TE_11621 Chr9 4389902 4389903 + RETRO2_LTR 12874 0.1352 (405/2996) 0 * * Os_TE_11601 Chr9 4386521 4386520 + TWIF 586 0.0004 (1/2314) 0 * * Os_TE_11593 Chr9 4378204 4378205 + COPI2_LTR 4733 0.0095 (28/2962) 0 * Os_TE_11592 Os_TE_11592 Chr9 4378200 4378199 - COPI2_LTR 4733 0.0094 (28/2970) 0 * Os_TE_11593 Os_TE_11587 Chr9 4375206 4375207 - NDNA1TNA_OS 334 0.6664 (1926/2890) -1 * * Os_TE_11580 Chr9 4370972 4370971 + RIREX_LTR 8828 0.0003 (1/2990) 0 * * Os_TE_11567 Chr9 4367968 4367967 - ORSgTETNOOT02000 263 0.0748 (218/2913) 0 * * Os_TE_11556 Chr9 4366658 4366659 + RETRO2_LTR 12874 0.0263 (77/2930) 0 * * Os_TE_11551 Chr9 4365207 4365208 + SPMLIKE 10989 0.2749 (788/2867) 0 * Os_TE_11550 Os_TE_11550 Chr9 4365205 4365204 - ORSgTETN00200001 10994 0.2191 (581/2652) 0 * Os_TE_11551 Os_TE_11525 Chr9 4348568 4348569 + AMYLTP 383 0.0007 (2/2840) 0 * Os_TE_11524 Os_TE_11524 Chr9 4348560 4348559 - AMYLTP 383 0.0010 (2/2047) 0 * Os_TE_11525 Os_TE_11523 Chr9 4348529 4348530 - MUDROS1 4932 0.0067 (20/2983) 0 * Os_TE_11522 Os_TE_11522 Chr9 4348524 4348523 + Mudr5_OS 5952 0.0074 (22/2975) 0 * Os_TE_11523 Os_TE_11501 Chr9 4332969 4332970 + ORSgTERTOOT00009 12852 0.1337 (400/2992) 0 * Os_TE_11500 Os_TE_11500 Chr9 4332965 4332964 - RETRO2_LTR 12874 0.1340 (401/2993) 0 * Os_TE_11501 Os_TE_11497 Chr9 4330558 4330559 - TRUNCATOR 2918 0.0806 (240/2978) 0 * * Os_TE_11496 Chr9 4330547 4330546 - DS-RICE4N 715 0.3758 (1035/2754) 0 * * Os_TE_11490 Chr9 4327963 4327964 + RIREX_LTR 8828 0.3425 (1009/2946) 0 * Os_TE_11489 Os_TE_11489 Chr9 4327959 4327958 - RIREX_LTR 8828 0.3418 (1009/2952) 0 * Os_TE_11490 Os_TE_11487 Chr9 4327883 4327884 + TRUNCATOR 2918 0.2874 (847/2947) 0 * * Os_TE_11480 Chr9 4325057 4325058 - RIRE3_LTR 12054 0.0108 (22/2028) 0 * * Os_TE_11453 Chr9 4310073 4310074 + TRUNCATOR 2918 0.4233 (866/2046) 0 * * Os_TE_11415 Chr9 4289793 4289794 + ORSiCMCM00100019 2717 0.1300 (389/2992) 0 * Os_TE_11414 Os_TE_11414 Chr9 4289789 4289788 - TRUNCATOR2_LTR 2904 0.1328 (398/2997) 0 * Os_TE_11415 Os_TE_11396 Chr9 4282379 4282380 - GYPSY1-LTR_OS 8900 0.1438 (325/2260) 0 * * Os_TE_11388 Chr9 4281329 4280358 - COPIA2-LTR_OS 6433 0.6749 (2012/2981) 1 Solo_LTR Os_TE_11385 Os_TE_11385 Chr9 4280358 4281329 + COPIA2-LTR_OS 6433 0.6694 (1976/2952) 1 Solo_LTR Os_TE_11388 Os_TE_11382 Chr9 4279490 4279491 - ORSiTERT00100063 7723 0.3394 (965/2843) 0 * * Os_TE_11367 Chr9 4274196 4274195 - RIREX_LTR 8828 0.2532 (401/1584) 0 * * Os_TE_11328 Chr9 4260509 4260140 + CASTAWAY 364 0.6728 (2005/2980) 1 Intact Os_TE_11325 Os_TE_11325 Chr9 4260139 4260502 - ORSgTEMT00600085 364 0.6656 (1957/2940) 1 Intact Os_TE_11328 Os_TE_11306 Chr9 4257399 4257400 - RIRE3A_LTR 10580 0.0003 (1/2977) 0 * * Os_TE_11291 Chr9 4254306 4254305 + MERMITEB 1610 0.3330 (985/2958) 0 * * Os_TE_11289 Chr9 4253746 4253621 + ORSgTEMT01702111 154 0.6767 (2020/2985) 1 Intact Os_TE_11285 Os_TE_11285 Chr9 4253621 4253743 + ORSgTEMT01700513 151 0.6757 (2017/2985) 1 Intact Os_TE_11289 Os_TE_11277 Chr9 4250256 4250257 - SZ-58LTR 114 0.2152 (550/2556) 0 * * Os_TE_11274 Chr9 4248866 4248865 + TRUNCATOR 2918 0.0029 (6/2056) 0 * Os_TE_11273 Os_TE_11273 Chr9 4248865 4248866 - TRUNCATOR 2918 0.0029 (6/2055) 0 * Os_TE_11274 Os_TE_11227 Chr9 4229937 4229677 - INDITTO 263 0.8579 (2029/2365) 1 Intact Os_TE_11226 Os_TE_11226 Chr9 4229675 4229937 - ORSgTETNOOT01337 247 0.6522 (1849/2835) 1 Intact Os_TE_11227 Os_TE_11215 Chr9 4224749 4224750 - RIRE3_LTR 12054 0.0003 (1/2989) 0 * * Os_TE_11207 Chr9 4222476 4222475 - AMYLTP 383 0.3885 (1014/2610) 0 * Os_TE_11205 Os_TE_11205 Chr9 4222457 4222458 + ORSgTEMT00800058 376 0.3772 (971/2574) 0 * Os_TE_11207 Os_TE_11198 Chr9 4220665 4220664 - MERMITED 1572 0.2942 (806/2740) 0 * * Os_TE_11193 Chr9 4219969 4219666 - ORSgTEMT02900061 318 0.6754 (2012/2979) 1 Intact * Os_TE_11179 Chr9 4213476 4213477 - MPING 430 0.0003 (1/2988) 0 * Os_TE_11178 Os_TE_11178 Chr9 4213474 4213473 + MPING 430 0.0004 (1/2511) 0 * Os_TE_11179 Os_TE_11164 Chr9 4207617 4207618 + SPMLIKE 10989 0.0003 (1/2954) 0 * Os_TE_11163 Os_TE_11163 Chr9 4207615 4207614 - ORSgTETN00200001 10994 0.0003 (1/2964) 0 * Os_TE_11164 Os_TE_11157 Chr9 4206696 4206695 - GYPSY-A_LTR 8951 0.0509 (145/2849) 0 * * Os_TE_11150 Chr9 4201605 4201606 + SEVERIN-2 1952 0.3609 (1046/2898) 0 * * Os_TE_11140 Chr9 4191108 4191109 + GYPSY-A_LTR 8951 0.3174 (943/2971) 0 * * Os_TE_11112 Chr9 4179092 4179091 - COPIA1-LTR_OS 9292 0.0017 (5/2951) 0 * * Os_TE_11102 Chr9 4176190 4176189 + COPIA2-LTR_OS 6433 0.0014 (4/2905) 0 * * Os_TE_11078 Chr9 4164734 4164581 + ORSgTEMT01700632 122 0.6512 (1942/2982) 1 Intact Os_TE_11076 Os_TE_11076 Chr9 4164581 4164734 - ORSgTEMT01701302 154 0.6491 (1929/2972) 1 Intact Os_TE_11078 Os_TE_11073 Chr9 4164372 4164185 - F569 228 0.6513 (1933/2968) 1 Intact Os_TE_11071 Os_TE_11071 Chr9 4164180 4164369 + F569 228 0.6561 (1952/2975) 1 Intact Os_TE_11073 Os_TE_11059 Chr9 4159635 4159272 - ORSgTEMT00600085 364 0.6537 (1950/2983) 1 Intact Os_TE_11058 Os_TE_11058 Chr9 4159272 4159629 + ORSgTEMT00600502 360 0.6397 (1859/2906) 1 Intact Os_TE_11059 Os_TE_11057 Chr9 4159212 4144946 - CLOUD-6 508 0.6380 (1831/2870) 1 Intact Os_TE_11031 Os_TE_11031 Chr9 4144946 4159212 - CLOUD-6 508 0.6329 (1802/2847) 1 Intact Os_TE_11057 Os_TE_11029 Chr9 4144563 4144562 - TELIA 141 0.3576 (1046/2925) 0 * * Os_TE_11013 Chr9 4141467 4141466 - DS-RICE2N 613 0.3732 (1099/2945) 0 * * Os_TE_11009 Chr9 4140713 4140714 + ORSiTERTOOT00226 792 0.0003 (1/2945) 0 * * Os_TE_10994 Chr9 4137294 4137293 - RETROSAT2LTR 12796 0.3694 (1105/2991) 0 * * Os_TE_10993 Chr9 4137110 4137111 - MERMITE18E 1528 0.3567 (1050/2944) 0 * Os_TE_10992 Os_TE_10992 Chr9 4137106 4137105 + MERMITE18E 1528 0.3608 (1071/2968) 0 * Os_TE_10993 Os_TE_10990 Chr9 4136861 4136862 - RIREX_LTR 8828 0.0104 (31/2971) 0 * Os_TE_10989 Os_TE_10989 Chr9 4136857 4136856 + RIREX_LTR 8828 0.0104 (31/2973) 0 * Os_TE_10990 Os_TE_10976 Chr9 4123424 4135027 - COPIO_LTR 11693 0.5023 (1114/2218) 1 Intact * Os_TE_10850 Chr9 4051134 4051133 + RETROSAT3_LTR 11537 0.0144 (43/2993) 0 * * Os_TE_10849 Chr9 4050794 4050793 + TRUNCATOR 2918 0.0017 (5/2986) 0 * * Os_TE_10848 Chr9 4050629 4050630 + RETRO2A_LTR 12895 0.0124 (37/2990) 0 * Os_TE_10847 Os_TE_10847 Chr9 4050625 4050624 - RETRO1_LTR 8314 0.0120 (36/2989) 0 * Os_TE_10848 Os_TE_10833 Chr9 4041361 4041362 - FOCUS 257 0.0060 (18/2992) 0 * Os_TE_10832 Os_TE_10832 Chr9 4041359 4041358 + FOCUS 257 0.0060 (18/2993) 0 * Os_TE_10833 Os_TE_10823 Chr9 4039366 4039365 + RIREX_LTR 8828 0.0158 (47/2976) 0 * * Os_TE_10816 Chr9 4036695 4036696 - INDITTO 263 0.2828 (841/2974) 0 * Os_TE_10815 Os_TE_10815 Chr9 4036693 4036692 + INDITTO 263 0.2860 (852/2979) 0 * Os_TE_10816 Os_TE_10799 Chr9 4018309 4018310 + AMYLTP 383 0.0010 (3/2970) 0 * Os_TE_10798 Os_TE_10798 Chr9 4018301 4018300 - AMYLTP 383 0.0007 (2/2972) 0 * Os_TE_10799 Os_TE_10751 Chr9 3994435 3994434 - TRUNCATOR2_LTR 2904 0.0077 (6/779) 0 * * Os_TE_10748 Chr9 3994275 3994274 + RIRE3_LTR 12054 0.1909 (227/1189) 0 * * Os_TE_10729 Chr9 3982891 3982892 - RIRE3_LTR 12054 0.0003 (1/2980) 0 * Os_TE_10728 Os_TE_10728 Chr9 3982887 3982886 + RIRE3_LTR 12054 0.0003 (1/2979) 0 * Os_TE_10729 Os_TE_10727 Chr9 3982774 3982775 - RIRE3_LTR 12054 0.0070 (21/2998) 0 * * Os_TE_10710 Chr9 3978205 3978204 - SZ-9LTR 965 0.0007 (2/2966) 0 * * Os_TE_10702 Chr9 3972284 3972285 + ORSiTERTOOT00296 5553 0.0003 (1/2981) 0 * Os_TE_10701 Os_TE_10701 Chr9 3972280 3972279 - SC-3_LTR 5748 0.0003 (1/2983) 0 * Os_TE_10702 Os_TE_10676 Chr9 3965566 3965567 - MuDR4_OS 7610 0.0076 (22/2904) 0 * * Os_TE_10663 Chr9 3963327 3963326 - SC-3_LTR 5748 0.0003 (1/2998) 0 * * Os_TE_10637 Chr9 3953586 3953587 - HARB-1_OS 5166 0.0003 (1/2924) 0 * Os_TE_10636 Os_TE_10636 Chr9 3953584 3953583 + HARB-1_OS 5166 0.0003 (1/2933) 0 * Os_TE_10637 Os_TE_10635 Chr9 3953057 3953058 + RIRE2_LTR 11306 0.0157 (47/2995) 0 * Os_TE_10634 Os_TE_10634 Chr9 3953053 3953052 - RIRE2_LTR 11306 0.0144 (43/2995) 0 * Os_TE_10635 Os_TE_10633 Chr9 3952950 3952951 + COPIA2-LTR_OS 6433 0.0010 (3/2995) 0 * Os_TE_10632 Os_TE_10632 Chr9 3952946 3952945 - COPIA2-LTR_OS 6433 0.0010 (3/2998) 0 * Os_TE_10633 Os_TE_10574 Chr9 3928459 3928460 + MuDR3_OS 8604 0.0494 (55/1113) 0 * Os_TE_10573 Os_TE_10573 Chr9 3928452 3928451 - MuDR3_OS 8604 0.0182 (53/2913) 0 * Os_TE_10574 Os_TE_10559 Chr9 3914799 3914798 - CACTA-H 1152 0.0100 (19/1891) 0 * Os_TE_10558 Os_TE_10558 Chr9 3914796 3914797 + CACTA-B 1103 0.0096 (18/1873) 0 * Os_TE_10559 Os_TE_10542 Chr9 3906706 3906707 + TRUNCATOR 2918 0.0093 (18/1934) 0 * * Os_TE_10531 Chr9 3901804 3901805 + ORSgTETNOOT00908 242 0.0070 (21/2985) 0 * * Os_TE_10499 Chr9 3890487 3890488 - SZ-62LTR 3649 0.1635 (490/2997) 0 * Os_TE_10498 Os_TE_10498 Chr9 3890484 3890483 + SZ-62LTR 3649 0.1604 (480/2993) 0 * Os_TE_10499 Os_TE_10489 Chr9 3888308 3888309 + NDNA1TNA_OS 334 0.0003 (1/2990) 0 * Os_TE_10488 Os_TE_10488 Chr9 3888306 3888305 - NDNA1TNA_OS 334 0.0003 (1/2992) 0 * Os_TE_10489 Os_TE_10486 Chr9 3887926 3887925 + SPMLIKE 10989 0.0071 (21/2971) 0 * * Os_TE_10472 Chr9 3884353 3884354 + RIREX_LTR 8828 0.0003 (1/2984) 0 * Os_TE_10471 Os_TE_10471 Chr9 3884349 3884348 - RIREX_LTR 8828 0.0003 (1/2984) 0 * Os_TE_10472 Os_TE_10436 Chr9 3870646 3870647 + GYPSY-A_LTR 8951 0.0003 (1/2939) 0 * * Os_TE_10420 Chr9 3864949 3864948 - ORSiTERTOOT00086 525 0.0007 (2/2940) 0 * * Os_TE_10380 Chr9 3850712 3850711 - SC-8_LTR 4951 0.0003 (1/2956) 0 * * Os_TE_10379 Chr9 3850483 3850482 - TRUNCATOR2_LTR 2904 0.0071 (21/2966) 0 * Os_TE_10378 Os_TE_10378 Chr9 3850482 3850483 - TRUNCATOR 2918 0.0067 (20/2973) 0 * Os_TE_10379 Os_TE_10375 Chr9 3849409 3849410 + ORSiCMCM00100019 2717 0.5453 (1630/2989) 0 * Os_TE_10374 Os_TE_10374 Chr9 3849405 3849404 - TRUNCATOR2_LTR 2904 0.5466 (1637/2995) 0 * Os_TE_10375 Os_TE_10319 Chr9 3830113 3830114 - RIREX_LTR 8828 0.1628 (488/2997) 0 * Os_TE_10318 Os_TE_10318 Chr9 3830109 3830108 + RIREX_LTR 8828 0.1631 (489/2998) 0 * Os_TE_10319 Os_TE_10299 Chr9 3820667 3820666 - RETROSAT2LTR 12796 0.0003 (1/2989) 0 * * Os_TE_10297 Chr9 3819496 3819497 + ORSgTEMT00502544 146 0.0003 (1/2984) 0 * * Os_TE_10248 Chr9 3795745 3795744 - STOWAWAY51_OS 246 0.0003 (1/2986) 0 * * Os_TE_10181 Chr9 3760372 3760373 + SC-8_LTR 4951 0.0003 (1/2985) 0 * Os_TE_10180 Os_TE_10180 Chr9 3760368 3760367 - SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_10181 Os_TE_10176 Chr9 3758113 3758112 + STOWAWAY50_OS 174 0.0003 (1/2949) 0 * * Os_TE_10135 Chr9 3741982 3741983 - TRUNCATOR2_LTR 2904 0.1816 (543/2990) 0 * Os_TE_10134 Os_TE_10134 Chr9 3741978 3741977 + ORSiTERTOOT00028 8600 0.1769 (529/2990) 0 * Os_TE_10135 Os_TE_10114 Chr9 3735678 3735679 + ORSiTERTOOT00226 792 0.0003 (1/2935) 0 * Os_TE_10113 Os_TE_10113 Chr9 3735674 3735673 - SZ-22_LTR 4403 0.0003 (1/2924) 0 * Os_TE_10114 Os_TE_10108 Chr9 3731446 3731447 + RIREX_LTR 8828 0.0003 (1/2971) 0 * * Os_TE_10106 Chr9 3731206 3731205 + RIREX_LTR 8828 0.0003 (1/2967) 0 * * Os_TE_10092 Chr9 3727904 3727905 + RIREX_LTR 8828 0.0126 (37/2946) 0 * Os_TE_10091 Os_TE_10091 Chr9 3727900 3727899 - RIREX_LTR 8828 0.0127 (37/2906) 0 * Os_TE_10092 Os_TE_10084 Chr9 3718705 3718706 - ORSgTERT00201216 11284 0.6557 (1956/2983) 0 * Os_TE_10083 Os_TE_10083 Chr9 3718701 3718700 - RIRE2_LTR 11306 0.6462 (1892/2928) 0 * Os_TE_10084 Os_TE_10082 Chr9 3718698 3718699 - ORSgTERT00201216 11284 0.6556 (1953/2979) 0 * * Os_TE_10001 Chr9 3701892 3701891 + TRUNCATOR 2918 0.0120 (36/2997) 0 * Os_TE_10000 Os_TE_10000 Chr9 3701891 3701892 - TRUNCATOR 2918 0.0114 (34/2995) 0 * Os_TE_10001 Os_TE_9976 Chr9 3692907 3692906 - TRUNCATOR 2918 0.6481 (1908/2944) 0 * * Os_TE_9888 Chr9 3636772 3636773 - RIREX_LTR 8828 0.0004 (1/2841) 0 * Os_TE_9887 Os_TE_9887 Chr9 3636768 3636767 + RIREX_LTR 8828 0.0004 (1/2839) 0 * Os_TE_9888 Os_TE_9880 Chr9 3634287 3634286 + COPI2_LTR 4733 0.0003 (1/2968) 0 * * Os_TE_9867 Chr9 3629061 3629062 - SC-8_LTR 4951 0.0010 (3/2995) 0 * Os_TE_9866 Os_TE_9866 Chr9 3629057 3629056 + SC-8_LTR 4951 0.0010 (3/2994) 0 * Os_TE_9867 Os_TE_9852 Chr9 3623431 3623430 - SC-8_LTR 4951 0.0003 (1/2987) 0 * * Os_TE_9799 Chr9 3607918 3607919 - WUJI 257 0.0004 (1/2679) 0 * * Os_TE_9797 Chr9 3606440 3606441 - SC-8_LTR 4951 0.0141 (42/2983) 0 * Os_TE_9796 Os_TE_9796 Chr9 3606436 3606435 + SC-8_LTR 4951 0.0144 (43/2978) 0 * Os_TE_9797 Os_TE_9792 Chr9 3598582 3598583 - ORSgTEMT00900099 250 0.0003 (1/2979) 0 * * Os_TE_9748 Chr9 3571370 3571371 - SZ-9LTR 965 0.0108 (31/2880) 0 * Os_TE_9747 Os_TE_9747 Chr9 3571366 3571365 + SZ-9LTR 965 0.0098 (28/2851) 0 * Os_TE_9748 Os_TE_9705 Chr9 3554801 3554802 - RIRE3A_LTR 10580 0.1693 (485/2865) 0 * * Os_TE_9611 Chr9 3521745 3522529 - ORSiTERTOOT00035 413 0.7454 (1092/1465) 1 Intact * Os_TE_9582 Chr9 3517565 3517566 - ORSgTEMT00501219 127 0.0004 (1/2703) 0 * * Os_TE_9579 Chr9 3517157 3517156 - SZ-9LTR 965 0.5625 (1621/2882) 0 * * Os_TE_9551 Chr9 3504903 3504904 - ORSiTETNOOT00156 3648 0.0088 (26/2961) 0 * Os_TE_9550 Os_TE_9550 Chr9 3504896 3504895 + TWIFBIG 3567 0.0098 (29/2961) 0 * Os_TE_9551 Os_TE_9468 Chr9 3469662 3469663 - SZ-22_LTR 4403 0.0007 (2/2988) 0 * Os_TE_9467 Os_TE_9467 Chr9 3469658 3469657 + ORSiTERTOOT00226 792 0.0007 (2/2991) 0 * Os_TE_9468 Os_TE_9293 Chr9 3385033 3385034 + RIRE3_LTR 12054 0.0094 (28/2983) 0 * * Os_TE_9247 Chr9 3366513 3366514 + TRUNCATOR 2918 0.0529 (35/662) 0 * Os_TE_9246 Os_TE_9246 Chr9 3366507 3366506 - ORSiTERT00200154 9386 0.7177 (1627/2267) 0 * Os_TE_9247 Os_TE_9220 Chr9 3357481 3357482 - RIREX_LTR 8828 0.0003 (1/2976) 0 * * Os_TE_9017 Chr9 3234974 3234973 - SZ-22_LTR 4403 0.0003 (1/2971) 0 * * Os_TE_8962 Chr9 3217739 3217740 - TRUNCATOR2_LTR 2904 0.0003 (1/2981) 0 * Os_TE_8961 Os_TE_8961 Chr9 3217735 3217734 + ORSiCMCM00100019 2717 0.0003 (1/2964) 0 * Os_TE_8962 Os_TE_8933 Chr9 3210725 3210724 + COPIA2-LTR_OS 6433 0.0054 (16/2990) 0 * * Os_TE_8931 Chr9 3209892 3209893 - SZ-22_LTR 4403 0.0015 (4/2700) 0 * Os_TE_8930 Os_TE_8930 Chr9 3209888 3209887 + ORSiTERTOOT00226 792 0.0015 (4/2629) 0 * Os_TE_8931 Os_TE_8919 Chr9 3207264 3207263 - OSLINE1-2 7128 0.0007 (2/2934) 0 * * Os_TE_8916 Chr9 3206693 3206692 - RIRE2_LTR 11306 0.1687 (487/2887) 0 * * Os_TE_8913 Chr9 3204674 3204675 - CRM-LTR_OS 7749 0.0003 (1/2948) 0 * Os_TE_8912 Os_TE_8912 Chr9 3204670 3204669 + CRM-LTR_OS 7749 0.0003 (1/2946) 0 * Os_TE_8913 Os_TE_8906 Chr9 3200812 3200813 - RETRO1_LTR 8314 0.0104 (31/2993) 0 * Os_TE_8905 Os_TE_8905 Chr9 3200808 3200807 + RETRO1_LTR 8314 0.0104 (31/2992) 0 * Os_TE_8906 Os_TE_8903 Chr9 3199504 3199505 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_8902 Os_TE_8902 Chr9 3199500 3199499 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_8903 Os_TE_8841 Chr9 3172664 3172665 - ORSiTETNOOT00216 3569 0.1660 (469/2825) 0 * Os_TE_8840 Os_TE_8840 Chr9 3172657 3172656 + TWIFBIG 3567 0.1607 (446/2775) 0 * Os_TE_8841 Os_TE_8827 Chr9 3166599 3166600 - SZ-40LTR 2465 0.0097 (29/2993) 0 * Os_TE_8826 Os_TE_8826 Chr9 3166595 3166594 + SZ-40LTR 2465 0.0097 (29/2987) 0 * Os_TE_8827 Os_TE_8776 Chr9 3147759 3147760 + ORSiTERTOOT00226 792 0.0007 (2/2988) 0 * Os_TE_8775 Os_TE_8775 Chr9 3147755 3147754 - SZ-22_LTR 4403 0.0007 (2/2986) 0 * Os_TE_8776 Os_TE_8767 Chr9 3141107 3141108 - RIREX_LTR 8828 0.0071 (21/2975) 0 * * Os_TE_8765 Chr9 3138864 3138865 - F569 228 0.0121 (36/2968) 0 * Os_TE_8764 Os_TE_8764 Chr9 3138862 3138861 + F569 228 0.0118 (35/2965) 0 * Os_TE_8765 Os_TE_8761 Chr9 3137691 3137692 - SZ-22_LTR 4403 0.0013 (4/2999) 0 * Os_TE_8760 Os_TE_8760 Chr9 3137687 3137686 + ORSiTERTOOT00226 792 0.0013 (4/2999) 0 * Os_TE_8761 Os_TE_8740 Chr9 3132315 3132316 + TRUNCATOR 2918 0.0064 (19/2986) 0 * Os_TE_8739 Os_TE_8739 Chr9 3132309 3132308 - ORSiTERT00200154 9386 0.0070 (21/2989) 0 * Os_TE_8740 Os_TE_8724 Chr9 3119421 3119420 + TWIFB1 3737 0.0007 (2/2984) 0 * * Os_TE_8722 Chr9 3118821 3118822 + TWIFBIG 3567 0.0120 (36/2990) 0 * Os_TE_8721 Os_TE_8721 Chr9 3118814 3118813 - ORSiTETNOOT00216 3569 0.0117 (35/2986) 0 * Os_TE_8722 Os_TE_8708 Chr9 3115042 3115041 - SZ-50_LTR 11691 0.0024 (7/2919) 0 * * Os_TE_8705 Chr9 3114620 3114619 + CRM-LTR_OS 7749 0.0006 (1/1780) 0 * * Os_TE_8661 Chr9 3090692 3089900 + ORSiTERTOOT00034 791 0.1531 (459/2998) 1 Intact Os_TE_8656 Os_TE_8656 Chr9 3086280 3090692 - SZ-22_LTR 4403 0.1524 (456/2993) 1 Intact Os_TE_8661 Os_TE_8624 Chr9 3073635 3073634 - RIRE2_LTR 11306 0.0120 (36/2988) 0 * * Os_TE_8584 Chr9 3065832 3065831 + COPIA2-LTR_OS 6433 0.1667 (492/2951) 0 * * Os_TE_8556 Chr9 3052014 3052015 - CRM-LTR_OS 7749 0.0003 (1/2933) 0 * Os_TE_8555 Os_TE_8555 Chr9 3052010 3052009 + CRM-LTR_OS 7749 0.0003 (1/2938) 0 * Os_TE_8556 Os_TE_8546 Chr9 3048324 3048323 - RIREX_LTR 8828 0.0007 (2/2836) 0 * * Os_TE_8328 Chr9 2977459 2977460 + ORSiTERTOOT00226 792 0.0146 (43/2940) 0 * * Os_TE_8324 Chr9 2976762 2976761 - SZ-22_LTR 4403 0.0007 (2/2940) 0 * * Os_TE_8313 Chr9 2973065 2973064 + ORSiTERTOOT00034 791 0.0005 (1/2050) 0 * * Os_TE_8222 Chr9 2957877 2957876 - SZ-22_LTR 4403 0.0003 (1/2985) 0 * * Os_TE_8141 Chr9 2930337 2930338 - SZ-25LTR 330 0.0017 (5/2996) 0 * * Os_TE_8135 Chr9 2926125 2926126 + ORSiTERTOOT00226 792 0.0013 (4/2986) 0 * Os_TE_8134 Os_TE_8134 Chr9 2926121 2926120 - SZ-22_LTR 4403 0.0013 (4/2986) 0 * Os_TE_8135 Os_TE_8106 Chr9 2912470 2912469 + SZ-22_LTR 4403 0.0003 (1/2979) 0 * * Os_TE_7736 Chr9 2715091 2715092 + ORSiTERTOOT00097 759 0.0007 (2/2970) 0 * Os_TE_7735 Os_TE_7735 Chr9 2715087 2715086 - SZ-22_LTR 4403 0.0007 (2/2971) 0 * Os_TE_7736 Os_TE_7734 Chr9 2714801 2714802 - RETROSAT3_LTR 11537 0.0003 (1/2930) 0 * * Os_TE_7726 Chr9 2711644 2711643 + ORSiTERTOOT00097 759 0.6169 (1728/2801) 0 * * Os_TE_7712 Chr9 2702453 2702452 - STOWAWAY11_OS 292 0.0003 (1/2982) 0 * * Os_TE_7708 Chr9 2697573 2697574 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * * Os_TE_7703 Chr9 2695475 2695476 + RETROSAT2LTR 12796 0.0003 (1/2988) 0 * Os_TE_7702 Os_TE_7702 Chr9 2695473 2695472 - RETROSAT2LTR 12796 0.0003 (1/2993) 0 * Os_TE_7703 Os_TE_7691 Chr9 2691475 2691474 + ORSiTERTOOT00226 792 0.0003 (1/2903) 0 * * Os_TE_7683 Chr9 2685079 2685080 + ORSiTERTOOT00226 792 0.0031 (9/2887) 0 * * Os_TE_7656 Chr9 2670986 2670985 - RIREX_LTR 8828 0.0070 (21/2984) 0 * * Os_TE_7644 Chr9 2667976 2667977 + ORSiTERTOOT00226 792 0.0003 (1/2986) 0 * * Os_TE_7638 Chr9 2664024 2664023 + COPI2_LTR 4733 0.0003 (1/2971) 0 * * Os_TE_7637 Chr9 2663348 2662556 - SZ-22_LTR 4403 0.1539 (455/2957) 1 Solo_LTR Os_TE_7630 Os_TE_7630 Chr9 2662556 2663348 + ORSiTERTOOT00226 792 0.1542 (456/2957) 1 Intact Os_TE_7637 Os_TE_7548 Chr9 2618742 2618741 - SZ-22_LTR 4403 0.0007 (2/2981) 0 * * Os_TE_7529 Chr9 2605378 2605379 + SC-8_LTR 4951 0.0003 (1/2942) 0 * Os_TE_7528 Os_TE_7528 Chr9 2605374 2605373 - SC-8_LTR 4951 0.0003 (1/2962) 0 * Os_TE_7529 Os_TE_7482 Chr9 2582119 2582120 + RIRE3A_LTR 10580 0.0114 (29/2535) 0 * Os_TE_7481 Os_TE_7481 Chr9 2582115 2582114 - RIRE3A_LTR 10580 0.0123 (31/2530) 0 * Os_TE_7482 Os_TE_7467 Chr9 2577626 2577627 - RETROSAT2LTRA 3112 0.0417 (106/2543) 0 * * Os_TE_7443 Chr9 2566896 2566895 - RIREX_LTR 8828 0.0103 (31/2998) 0 * * Os_TE_7428 Chr9 2559409 2559410 - SC-3_LTR 5748 0.0040 (12/2985) 0 * Os_TE_7427 Os_TE_7427 Chr9 2559405 2559404 + ORSiTERTOOT00296 5553 0.0040 (12/2988) 0 * Os_TE_7428 Os_TE_7412 Chr9 2553091 2553092 - MUDRN1_OS 764 0.1517 (448/2953) 0 * * Os_TE_7364 Chr9 2538915 2538916 + TRUNCATOR 2918 0.0100 (30/2993) 0 * Os_TE_7363 Os_TE_7363 Chr9 2538909 2538908 - ORSiTERT00200154 9386 0.0100 (30/2993) 0 * Os_TE_7364 Os_TE_7353 Chr9 2534034 2534033 + TRUNCATOR 2918 0.0017 (5/2997) 0 * * Os_TE_7299 Chr9 2511571 2511570 - TEMPINDAS 4259 0.0115 (34/2953) 0 * * Os_TE_7298 Chr9 2511357 2511358 + RIRE2_LTR 11306 0.0065 (19/2942) 0 * Os_TE_7297 Os_TE_7297 Chr9 2511353 2511352 - RIRE2_LTR 11306 0.0068 (20/2945) 0 * Os_TE_7298 Os_TE_7296 Chr9 2511234 2511233 + ORSgTETNOOT01139 147 0.0003 (1/2957) 0 * * Os_TE_7287 Chr9 2507328 2507329 + SZ-22_LTR 4403 0.0003 (1/2979) 0 * * Os_TE_7286 Chr9 2506990 2506989 + ORSgTETNOOT00908 242 0.0003 (1/2983) 0 * * Os_TE_7283 Chr9 2505712 2505713 - ORSgTEMT02400246 177 0.0010 (3/2992) 0 * * Os_TE_7271 Chr9 2499717 2499718 - RETROSAT3_LTR 11537 0.0103 (31/2996) 0 * * Os_TE_7204 Chr9 2468059 2468060 - RIRE3A_LTR 10580 0.0004 (1/2795) 0 * * Os_TE_7203 Chr9 2467568 2467569 + RETRO2_LTR 12874 0.8008 (2002/2500) 0 * Os_TE_7202 Os_TE_7202 Chr9 2467564 2467563 - RETRO2_LTR 12874 0.8005 (2002/2501) 0 * Os_TE_7203 Os_TE_7188 Chr9 2461079 2461080 + ORSiTERTOOT00226 792 0.0023 (7/2983) 0 * Os_TE_7187 Os_TE_7187 Chr9 2461075 2461074 - SZ-22_LTR 4403 0.0027 (8/2983) 0 * Os_TE_7188 Os_TE_7183 Chr9 2458287 2458288 - SZ-22_LTR 4403 0.0007 (2/2938) 0 * Os_TE_7182 Os_TE_7182 Chr9 2458283 2458282 + ORSiTERTOOT00226 792 0.0007 (2/2932) 0 * Os_TE_7183 Os_TE_7076 Chr9 2402877 2402876 - RETRO2_LTR 12874 0.6698 (1980/2956) 0 * * Os_TE_7074 Chr9 2402468 2402467 + RETRO2_LTR 12874 0.6598 (1926/2919) 0 * * Os_TE_7073 Chr9 2402332 2402333 - SC-3_LTR 5748 0.0003 (1/2982) 0 * Os_TE_7072 Os_TE_7072 Chr9 2402328 2402327 + ORSiTERTOOT00296 5553 0.0003 (1/2981) 0 * Os_TE_7073 Os_TE_7070 Chr9 2401920 2401919 - SC-3_LTR 5748 0.0044 (13/2986) 0 * * Os_TE_7058 Chr9 2395429 2395428 - RIRE2_LTR 11306 0.1654 (485/2933) 0 * * Os_TE_7038 Chr9 2387874 2387511 + ORSgTEMT00600287 363 0.1544 (461/2986) 1 Intact * Os_TE_7027 Chr9 2385473 2385115 + ORSgTEMT00600272 361 0.1865 (461/2472) 1 Intact Os_TE_7024 Os_TE_7024 Chr9 2385109 2385473 - ORSgTEMT00600524 364 0.1581 (458/2897) 1 Intact Os_TE_7027 Os_TE_7002 Chr9 2379589 2371243 - SZ-22_LTR 4403 0.1678 (426/2539) 0.83 Intact Os_TE_6998 Os_TE_6998 Chr9 2371243 2372036 + ORSiTERTOOT00226 792 0.1991 (472/2371) 1 Intact Os_TE_7002 Os_TE_6987 Chr9 2367410 2367411 + CRM-LTR_OS 7749 0.0003 (1/2947) 0 * * Os_TE_6979 Chr9 2363670 2363671 - NDNA1TNA_OS 334 0.1649 (493/2989) 0 * Os_TE_6978 Os_TE_6978 Chr9 2363666 2363665 + NDNA1TNA_OS 334 0.1651 (494/2992) 0 * Os_TE_6979 Os_TE_6896 Chr9 2333399 2333400 - SZ-22_LTR 4403 0.0019 (2/1042) 0 * * Os_TE_6837 Chr9 2308270 2308271 + INDITTO 263 0.0003 (1/2989) 0 * Os_TE_6836 Os_TE_6836 Chr9 2308268 2308267 - INDITTO 263 0.0003 (1/2999) 0 * Os_TE_6837 Os_TE_6832 Chr9 2307509 2307510 + OSTONOR1_LTR 6440 0.0013 (4/2987) 0 * * Os_TE_6831 Chr9 2307428 2307427 - ORSiTERT00100062 5674 0.0014 (4/2949) 0 * * Os_TE_6828 Chr9 2306163 2298596 + RIREX_LTR 8828 0.0607 (182/2998) 1 Intact Os_TE_6827 Os_TE_6827 Chr9 2298596 2306163 - RIREX_LTR 8828 0.0610 (183/2998) 1 Intact Os_TE_6828 Os_TE_6781 Chr9 2280211 2280212 + ORSgTERT00200063 5773 0.8896 (411/462) -1 * * Os_TE_6713 Chr9 2234481 2234480 - RIREX_LTR 8828 0.0100 (30/2990) 0 * * Os_TE_6712 Chr9 2234221 2234220 + ORSiTERTOOT00226 792 0.0003 (1/2998) 0 * * Os_TE_6704 Chr9 2232504 2232505 - SC-3_LTR 5748 0.0003 (1/2990) 0 * Os_TE_6703 Os_TE_6703 Chr9 2232500 2232499 + ORSiTERTOOT00296 5553 0.0003 (1/2991) 0 * Os_TE_6704 Os_TE_6696 Chr9 2229937 2229936 - F770 284 0.0100 (30/2991) 0 * * Os_TE_6660 Chr9 2216813 2216814 + ORSiTERTOOT00296 5553 0.0010 (3/2954) 0 * Os_TE_6659 Os_TE_6659 Chr9 2216809 2216808 - SC-3_LTR 5748 0.0010 (3/2955) 0 * Os_TE_6660 Os_TE_6658 Chr9 2215072 2215073 + ORSiTERTOOT00296 5553 0.0003 (1/2895) 0 * Os_TE_6657 Os_TE_6657 Chr9 2215068 2215067 - SC-3_LTR 5748 0.0003 (1/2910) 0 * Os_TE_6658 Os_TE_6612 Chr9 2192528 2192529 - COPIA2-LTR_OS 6433 0.0024 (7/2896) 0 * Os_TE_6611 Os_TE_6611 Chr9 2192524 2192523 + COPIA2-LTR_OS 6433 0.0021 (6/2889) 0 * Os_TE_6612 Os_TE_6590 Chr9 2185106 2185107 - SC-3_LTR 5748 0.0003 (1/2962) 0 * Os_TE_6589 Os_TE_6589 Chr9 2185102 2185101 + ORSiTERTOOT00296 5553 0.0003 (1/2963) 0 * Os_TE_6590 Os_TE_6497 Chr9 2137293 2137292 - TRUNCATOR2_LTR 2904 0.0102 (30/2936) 0 * * Os_TE_6468 Chr9 2124984 2124983 + ORSgTETNOOT00012 241 0.0068 (20/2961) 0 * * Os_TE_6467 Chr9 2124956 2124955 - CACTA-H 1152 0.6580 (1943/2953) 0 * Os_TE_6466 Os_TE_6466 Chr9 2124948 2124949 + CACTA-B 1103 0.6554 (1936/2954) 0 * Os_TE_6467 Os_TE_6460 Chr9 2120303 2120304 - RETRO2_LTR 12874 0.1649 (493/2990) 0 * * Os_TE_6457 Chr9 2117371 2117372 - ENSPM6_OS 9815 0.1573 (460/2925) 0 * Os_TE_6456 Os_TE_6456 Chr9 2117369 2117368 + ENSPM5_OS 9581 0.1570 (457/2911) 0 * Os_TE_6457 Os_TE_6416 Chr9 2095790 2094886 - RIRE5-LTR_OS 6427 0.3252 (967/2974) 1 Solo_LTR * Os_TE_6413 Chr9 2094889 2095793 + RIRE5-LTR_OS 6427 0.4788 (858/1792) 1 Solo_LTR * Os_TE_6412 Chr9 2094869 2094868 - TRUNCATOR 2918 0.0012 (1/853) 0 * * Os_TE_6411 Chr9 2094867 2094868 + TRUNCATOR 2918 0.6947 (1984/2856) 0 * * Os_TE_6409 Chr9 2094485 2094486 - RETRO1_LTR 8314 0.1856 (537/2894) 0 * Os_TE_6408 Os_TE_6408 Chr9 2094481 2094480 + RETRO2A_LTR 12895 0.1863 (537/2883) 0 * Os_TE_6409 Os_TE_6390 Chr9 2089185 2089186 - CLOUD 734 0.6649 (1972/2966) 0 * Os_TE_6389 Os_TE_6389 Chr9 2089177 2089176 - CLOUD 734 0.6641 (1951/2938) 0 * Os_TE_6390 Os_TE_6384 Chr9 2088089 2088088 + RETRO2_LTR 12874 0.0003 (1/2970) 0 * * Os_TE_6374 Chr9 2083077 2083078 + RIRE2_LTR 11306 0.0114 (34/2994) 0 * Os_TE_6373 Os_TE_6373 Chr9 2083073 2083072 - RIRE2_LTR 11306 0.0127 (38/2993) 0 * Os_TE_6374 Os_TE_6334 Chr9 2066070 2066071 + ORSiTERTOOT00027 10853 0.1585 (469/2959) 0 * * Os_TE_6317 Chr9 2050322 2050323 - RIREX_LTR 8828 0.0003 (1/2980) 0 * * Os_TE_6299 Chr9 2045538 2045537 + RETROSAT2LTR 12796 0.0067 (20/2987) 0 * * Os_TE_6296 Chr9 2041421 2044535 - RETROSAT2LTRA 3112 0.1528 (458/2997) 1 Intact * Os_TE_6259 Chr9 2030785 2030544 - STOWAWAY51_OS 246 0.7856 (469/597) 1 Intact * Os_TE_6232 Chr9 2020498 2020499 + ORSgTETNOOT00908 242 0.0003 (1/2982) 0 * * Os_TE_6229 Chr9 2018701 2018700 - NDNA1TNA_OS 334 0.0003 (1/2970) 0 * * Os_TE_6225 Chr9 2017984 2017985 + ORSgTEMT00600120 364 0.1649 (492/2984) 0 * * Os_TE_6206 Chr9 2013760 2013761 + SPMLIKE 10989 0.0067 (20/2974) 0 * Os_TE_6205 Os_TE_6205 Chr9 2013758 2013757 - ORSgTETN00200001 10994 0.0061 (18/2975) 0 * Os_TE_6206 Os_TE_6204 Chr9 2013519 2013520 - CASTAWAY 364 0.6708 (2003/2986) 0 * Os_TE_6203 Os_TE_6203 Chr9 2013518 2013517 + CASTAWAY 364 0.6620 (1951/2947) 0 * Os_TE_6204 Os_TE_6202 Chr9 2013074 2013073 + ORSgTEMT01601591 242 0.0003 (1/2875) 0 * * Os_TE_6197 Chr9 2008700 2008701 + ENSPM4_OS 11610 0.0081 (23/2850) 0 * * Os_TE_6180 Chr9 2004138 2004139 - SZ-40LTR 2465 0.0004 (1/2584) 0 * Os_TE_6179 Os_TE_6179 Chr9 2004134 2004133 + GYPSY-A_LTR 8951 0.0004 (1/2583) 0 * Os_TE_6180 Os_TE_6115 Chr9 1967793 1967792 + CRM-LTR_OS 7749 0.0003 (1/2909) 0 * * Os_TE_6071 Chr9 1959427 1959426 + ORSgTERT00100203 3544 0.0003 (1/2990) 0 * * Os_TE_6056 Chr9 1952524 1952525 - TRUNCATOR2_LTR 2904 0.0003 (1/2985) 0 * * Os_TE_6036 Chr9 1934791 1934792 - RIREX_LTR 8828 0.1639 (488/2977) 0 * Os_TE_6035 Os_TE_6035 Chr9 1934787 1934786 + RIREX_LTR 8828 0.1636 (486/2970) 0 * Os_TE_6036 Os_TE_5944 Chr9 1884510 1884511 - ORSgTERT00201216 11284 0.0003 (1/2980) 0 * * Os_TE_5930 Chr9 1879925 1879924 - F569 228 0.3524 (1043/2960) 0 * * Os_TE_5929 Chr9 1879836 1879835 - STOWAWAY51_OS 246 0.0003 (1/2882) 0 * * Os_TE_5917 Chr9 1877219 1864229 + RETRO2_LTR 12874 0.1556 (465/2988) 1 Intact Os_TE_5913 Os_TE_5913 Chr9 1864229 1877219 - RETRO2_LTR 12874 0.1560 (466/2988) 1 Intact Os_TE_5917 Os_TE_5905 Chr9 1859307 1859306 + ORSgTEMT00100291 345 0.0003 (1/2988) 0 * * Os_TE_5892 Chr9 1853715 1853716 - SZ-22_LTR 4403 0.0003 (1/2934) 0 * * Os_TE_5778 Chr9 1802382 1802383 + RETRO2A_LTR 12895 0.0070 (21/2995) 0 * Os_TE_5777 Os_TE_5777 Chr9 1802378 1802377 - RETRO2_LTR 12874 0.0070 (21/2995) 0 * Os_TE_5778 Os_TE_5769 Chr9 1796322 1796323 + ORSiTERTOOT00296 5553 0.0003 (1/2987) 0 * Os_TE_5768 Os_TE_5768 Chr9 1796318 1796317 + ORSiTERTOOT00296 5553 0.0003 (1/2988) 0 * Os_TE_5769 Os_TE_5738 Chr9 1781314 1781315 - SC-3_LTR 5748 0.0003 (1/2983) 0 * * Os_TE_5720 Chr9 1775260 1775259 - RIRE2_LTR 11306 0.0067 (20/2991) 0 * * Os_TE_5716 Chr9 1775154 1775155 - RIREX_LTR 8828 0.0003 (1/2992) 0 * Os_TE_5715 Os_TE_5715 Chr9 1775150 1775149 + RIREX_LTR 8828 0.0003 (1/2988) 0 * Os_TE_5716 Os_TE_5688 Chr9 1766020 1766021 + TRUNCATOR2_LTR 2904 0.0010 (3/2986) 0 * * Os_TE_5678 Chr9 1762564 1762565 + RIRE2_LTR 11306 0.0331 (36/1089) 0 * Os_TE_5677 Os_TE_5677 Chr9 1762560 1762559 - RIRE2_LTR 11306 0.0118 (35/2957) 0 * Os_TE_5678 Os_TE_5600 Chr9 1729952 1729953 - TRUNCATOR2_LTR 2904 0.0004 (1/2795) 0 * Os_TE_5599 Os_TE_5599 Chr9 1729948 1729947 + ORSiTERTOOT00028 8600 0.0004 (1/2800) 0 * Os_TE_5600 Os_TE_5598 Chr9 1726714 1726715 - SZ-35LTR 3853 0.2123 (592/2789) 0 * * Os_TE_5585 Chr9 1716393 1716392 + TRUNCATOR 2918 0.5971 (1688/2827) 0 * Os_TE_5584 Os_TE_5584 Chr9 1716392 1716393 - TRUNCATOR 2918 0.5924 (1663/2807) 0 * Os_TE_5585 Os_TE_5555 Chr9 1705434 1705435 - RIRE3_LTR 12054 0.0067 (20/2997) 0 * Os_TE_5554 Os_TE_5554 Chr9 1705430 1705429 + RIRE3_LTR 12054 0.0070 (21/2995) 0 * Os_TE_5555 Os_TE_5553 Chr9 1705203 1705202 + TRUNCATOR 2918 0.0017 (5/2999) 0 * Os_TE_5552 Os_TE_5552 Chr9 1705202 1705203 - TRUNCATOR 2918 0.0017 (5/2997) 0 * Os_TE_5553 Os_TE_5463 Chr9 1668939 1668938 - TRUNCATOR 2918 0.1969 (584/2966) 0 * * Os_TE_5447 Chr9 1659702 1659703 - RIREX_LTR 8828 0.0003 (1/2938) 0 * Os_TE_5446 Os_TE_5446 Chr9 1659698 1659697 + RIREX_LTR 8828 0.0003 (1/2941) 0 * Os_TE_5447 Os_TE_5432 Chr9 1651133 1651134 + ORSiTERTOOT00296 5553 0.0003 (1/2905) 0 * Os_TE_5431 Os_TE_5431 Chr9 1651129 1651128 - SC-3_LTR 5748 0.0003 (1/2911) 0 * Os_TE_5432 Os_TE_5424 Chr9 1648356 1648357 + SINE03_OS 360 0.0003 (1/2924) 0 * * Os_TE_5422 Chr9 1646915 1646916 - SC-3_LTR 5748 0.0003 (1/2993) 0 * Os_TE_5421 Os_TE_5421 Chr9 1646911 1646910 + ORSiTERTOOT00296 5553 0.0003 (1/2993) 0 * Os_TE_5422 Os_TE_5413 Chr9 1641541 1641540 - SC-3_LTR 5748 0.0003 (1/2989) 0 * * Os_TE_5411 Chr9 1641496 1641497 + SC-3_LTR 5748 0.0010 (3/2992) 0 * Os_TE_5410 Os_TE_5410 Chr9 1641492 1641491 - SC-3_LTR 5748 0.0010 (3/2991) 0 * Os_TE_5411 Os_TE_5358 Chr9 1611246 1611247 + RIREX_LTR 8828 0.0007 (2/2888) 0 * * Os_TE_5309 Chr9 1578532 1578533 - RIRE3_LTR 12054 0.0004 (1/2371) 0 * Os_TE_5308 Os_TE_5308 Chr9 1578528 1578527 + RIRE3_LTR 12054 0.0004 (1/2349) 0 * Os_TE_5309 Os_TE_5307 Chr9 1577819 1577820 + RIREX_LTR 8828 0.0004 (1/2449) 0 * Os_TE_5306 Os_TE_5306 Chr9 1577815 1577814 - RIREX_LTR 8828 0.0004 (1/2445) 0 * Os_TE_5307 Os_TE_5305 Chr9 1577176 1577175 + SPMLIKE 10989 0.0004 (1/2451) 0 * * Os_TE_5196 Chr9 1505979 1505980 - MuDR-5_OS 17471 0.1954 (581/2974) 0 * * Os_TE_5191 Chr9 1505168 1505169 - COPI2_LTR 4733 0.0003 (1/2990) 0 * Os_TE_5190 Os_TE_5190 Chr9 1505164 1505163 - COPI2_LTR 4733 0.0003 (1/2989) 0 * Os_TE_5191 Os_TE_5172 Chr9 1501919 1501918 + ORSgTETNOOT01668 244 0.0097 (29/2989) 0 * * Os_TE_5166 Chr9 1500589 1500590 - TRUNCATOR2_LTR 2904 0.0017 (5/2983) 0 * Os_TE_5165 Os_TE_5165 Chr9 1500585 1500584 + ORSiTERTOOT00028 8600 0.0017 (5/2990) 0 * Os_TE_5166 Os_TE_5151 Chr9 1496006 1496007 + RETROSAT2LTRA 3112 0.0925 (277/2994) 0 * * Os_TE_5136 Chr9 1491435 1491434 - RETROSAT2LTR 12796 0.0003 (1/2940) 0 * * Os_TE_5131 Chr9 1489330 1489329 + STOWAWAY44_OS 240 0.1900 (558/2937) 0 * Os_TE_5130 Os_TE_5130 Chr9 1489327 1489328 - STOWAWAY44_OS 240 0.1972 (586/2971) 0 * Os_TE_5131 Os_TE_5129 Chr9 1489270 1489271 + SZ-40LTR 2465 0.0003 (1/2977) 0 * Os_TE_5128 Os_TE_5128 Chr9 1489266 1489265 - GYPSY-A_LTR 8951 0.0003 (1/2979) 0 * Os_TE_5129 Os_TE_5126 Chr9 1489033 1489032 + ORSiTERTOOT00027 10853 0.0094 (28/2990) 0 * * Os_TE_5094 Chr9 1477924 1477925 + ORSiTERTOOT00027 10853 0.1650 (491/2975) 0 * * Os_TE_5081 Chr9 1470628 1470629 + RIREX_LTR 8828 0.0961 (261/2715) 0 * * Os_TE_5078 Chr9 1470582 1470583 - RIRE2_LTR 11306 0.0067 (20/2982) 0 * Os_TE_5077 Os_TE_5077 Chr9 1470578 1470577 - ORSgTERT00201216 11284 0.0048 (14/2900) 0 * Os_TE_5078 Os_TE_5061 Chr9 1462100 1462099 + TWIF 586 0.0101 (30/2982) 0 * * Os_TE_5053 Chr9 1458453 1457596 - MUDRN1_OS 764 0.1520 (447/2941) 1 Intact * Os_TE_5051 Chr9 1456891 1456892 + RIRE2_LTR 11306 0.0064 (19/2961) 0 * * Os_TE_5047 Chr9 1456004 1456003 - COPIA2-LTR_OS 6433 0.2010 (599/2980) 0 * * Os_TE_5007 Chr9 1437950 1437949 + RIREX_LTR 8828 0.0061 (18/2934) 0 * * Os_TE_4831 Chr9 1370166 1370167 - RIREX_LTR 8828 0.0017 (5/2994) 0 * Os_TE_4830 Os_TE_4830 Chr9 1370162 1370161 + RIREX_LTR 8828 0.0017 (5/2995) 0 * Os_TE_4831 Os_TE_4769 Chr9 1337999 1337859 + TELIA 141 0.4357 (478/1097) 1 Intact Os_TE_4768 Os_TE_4768 Chr9 1337859 1337999 - TELIA 141 0.4352 (477/1096) 1 Intact Os_TE_4769 Os_TE_4746 Chr9 1332006 1332005 - ORSgTETN00200001 10994 0.0003 (1/2994) 0 * * Os_TE_4732 Chr9 1324775 1324776 - RIREX_LTR 8828 0.1698 (508/2992) 0 * Os_TE_4731 Os_TE_4731 Chr9 1324771 1324770 + RIREX_LTR 8828 0.1719 (514/2990) 0 * Os_TE_4732 Os_TE_4689 Chr9 1308888 1308889 + SC-8_LTR 4951 0.6528 (1950/2987) 0 * Os_TE_4688 Os_TE_4688 Chr9 1308884 1308883 - SC-8_LTR 4951 0.6538 (1953/2987) 0 * Os_TE_4689 Os_TE_4666 Chr9 1298761 1298762 + F770 284 0.0072 (21/2937) 0 * * Os_TE_4662 Chr9 1298454 1297663 + ORSiTERTOOT00034 791 0.8209 (2452/2987) 1 Intact Os_TE_4657 Os_TE_4657 Chr9 1297663 1298454 - SZ-22_LTR 4403 0.8209 (2457/2993) 1 Solo_LTR Os_TE_4662 Os_TE_4655 Chr9 1297580 1297579 - RETROSAT2LTR 12796 0.5639 (1689/2995) 0 * * Os_TE_4615 Chr9 1283812 1283813 - AMYLTP 383 0.0893 (266/2980) 0 * * Os_TE_4609 Chr9 1279363 1279364 - CACTA-H 1152 0.0278 (83/2990) 0 * * Os_TE_4583 Chr9 1265817 1265818 - RIRE2_LTR 11306 0.0098 (29/2960) 0 * Os_TE_4582 Os_TE_4582 Chr9 1265813 1265812 + RIRE2_LTR 11306 0.0098 (29/2962) 0 * Os_TE_4583 Os_TE_4562 Chr9 1257229 1257228 - DNAUN1_OS 408 0.0161 (48/2990) 0 * * Os_TE_4551 Chr9 1247535 1254041 + COPIA2-LTR_OS 6433 0.1185 (338/2853) -1 Intact * Os_TE_4538 Chr9 1238753 1238754 + SZLTR 1249 0.1880 (548/2915) 0 * * Os_TE_4519 Chr9 1225758 1225759 + RIREX_LTR 8828 0.0003 (1/2978) 0 * Os_TE_4518 Os_TE_4518 Chr9 1225754 1225753 - RIREX_LTR 8828 0.0003 (1/2979) 0 * Os_TE_4519 Os_TE_4517 Chr9 1225077 1225078 + RIREX_LTR 8828 0.0070 (21/2993) 0 * Os_TE_4516 Os_TE_4516 Chr9 1225073 1225072 - RIREX_LTR 8828 0.0070 (21/2993) 0 * Os_TE_4517 Os_TE_4512 Chr9 1221088 1221087 + INDITTO 263 0.6583 (1963/2982) 0 * * Os_TE_4488 Chr9 1208130 1208131 - SZ-40LTR 2465 0.0093 (28/2997) 0 * Os_TE_4487 Os_TE_4487 Chr9 1208126 1208125 + GYPSY-A_LTR 8951 0.0090 (27/2996) 0 * Os_TE_4488 Os_TE_4486 Chr9 1207560 1207559 - RETROSAT2LTRA 3112 0.0097 (29/2991) 0 * * Os_TE_4469 Chr9 1200460 1200461 + ORSgTEMT01602637 232 0.0009 (1/1076) 0 * * Os_TE_4466 Chr9 1198665 1198664 - TRUNCATOR 2918 0.0090 (27/2998) 0 * Os_TE_4465 Os_TE_4465 Chr9 1198664 1198665 + TRUNCATOR 2918 0.0093 (28/2999) 0 * Os_TE_4466 Os_TE_4407 Chr9 1180931 1180932 + SZ-67LTR 1540 0.1673 (494/2953) 0 * * Os_TE_4392 Chr9 1178259 1178258 - GYPSY-A_LTR 8951 0.0071 (21/2969) 0 * * Os_TE_4364 Chr9 1168465 1168464 + OSTE33 1012 0.0827 (245/2962) 0 * * Os_TE_4350 Chr9 1158318 1158319 + COPI2_LTR 4733 0.0013 (4/2995) 0 * Os_TE_4349 Os_TE_4349 Chr9 1158314 1158313 - COPI2_LTR 4733 0.0013 (4/2994) 0 * Os_TE_4350 Os_TE_4326 Chr9 1145161 1145162 + ORSgTERT00200919 424 0.0003 (1/2968) 0 * * Os_TE_4323 Chr9 1141031 1141032 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_4322 Os_TE_4322 Chr9 1141027 1141026 - COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_4323 Os_TE_4297 Chr9 1127429 1127428 - RETRO2_LTR 12874 0.1709 (502/2938) 0 * * Os_TE_4290 Chr9 1126272 1126273 - INDITTO 263 0.3962 (1172/2958) 0 * Os_TE_4289 Os_TE_4289 Chr9 1126270 1126269 + INDITTO 263 0.4024 (1198/2977) 0 * Os_TE_4290 Os_TE_4230 Chr9 1098603 1098604 - ORSgTETN00200001 10994 0.1669 (499/2989) 0 * Os_TE_4229 Os_TE_4229 Chr9 1098601 1098600 + SPMLIKE 10989 0.1688 (505/2992) 0 * Os_TE_4230 Os_TE_4212 Chr9 1092453 1092452 + ORSgTEMT01601591 242 0.0003 (1/2964) 0 * Os_TE_4211 Os_TE_4211 Chr9 1092450 1092451 - STOWAWAY51_OS 246 0.0003 (1/2969) 0 * Os_TE_4212 Os_TE_4199 Chr9 1088711 1088712 - F524 291 0.0017 (5/2984) 0 * * Os_TE_4192 Chr9 1084336 1084337 + SPMLIKE 10989 0.0518 (152/2933) 0 * Os_TE_4191 Os_TE_4191 Chr9 1084334 1084333 - ORSgTETN00200001 10994 0.0499 (146/2923) 0 * Os_TE_4192 Os_TE_4190 Chr9 1084034 1084035 - COPIA2-LTR_OS 6433 0.0021 (6/2916) 0 * Os_TE_4189 Os_TE_4189 Chr9 1084030 1084029 + COPIA2-LTR_OS 6433 0.0014 (4/2922) 0 * Os_TE_4190 Os_TE_4188 Chr9 1083562 1083563 - RETROSAT5_LTR 13878 0.0074 (22/2972) 0 * Os_TE_4187 Os_TE_4187 Chr9 1083558 1083557 + SZ-67LTR 1540 0.0071 (21/2969) 0 * Os_TE_4188 Os_TE_4135 Chr9 1065896 1065897 - RIRE2_LTR 11306 0.1196 (356/2977) 0 * Os_TE_4134 Os_TE_4134 Chr9 1065892 1065891 - ORSgTERT00201216 11284 0.1229 (367/2987) 0 * Os_TE_4135 Os_TE_4133 Chr9 1065886 1065885 + ORSgTERT00201382 11280 0.0004 (1/2649) 0 * * Os_TE_4131 Chr9 1065094 1065093 + EnSpm-15_OS 8871 0.0007 (2/2991) 0 * * Os_TE_4116 Chr9 1054158 1054159 + AMYLTP 383 0.0014 (4/2959) 0 * Os_TE_4115 Os_TE_4115 Chr9 1054150 1054149 - AMYLTP 383 0.0010 (3/2958) 0 * Os_TE_4116 Os_TE_4084 Chr9 1044330 1044331 - SZ-62LTR 3649 0.0003 (1/2989) 0 * * Os_TE_4025 Chr9 1012577 1012576 + TWIFB1 3737 0.0003 (1/2954) 0 * * Os_TE_4003 Chr9 1005864 1005863 + TELIA 141 0.0024 (7/2958) 0 * * Os_TE_4000 Chr9 1005082 1005081 + COPIA2-LTR_OS 6433 0.5313 (1585/2983) 0 * * Os_TE_3998 Chr9 1003682 1003683 - TRUNCATOR2_LTR 2904 0.0271 (31/1145) 0 * * Os_TE_3990 Chr9 998823 998824 + RIREX_LTR 8828 0.0518 (155/2992) 0 * * Os_TE_3983 Chr9 992623 992622 + ORSgTEMT00500144 149 0.0542 (59/1089) 0 * * Os_TE_3974 Chr9 990741 990740 - ORSgTEMT01400011 212 0.0179 (53/2960) 0 * * Os_TE_3962 Chr9 989912 989913 - HARB-1_OS 5166 0.0003 (1/2950) 0 * Os_TE_3961 Os_TE_3961 Chr9 989910 989909 + HARB-1_OS 5166 0.0003 (1/2935) 0 * Os_TE_3962 Os_TE_3935 Chr9 978488 978487 - TRUNCATOR 2918 0.1084 (325/2999) 0 * Os_TE_3934 Os_TE_3934 Chr9 978487 978488 + TRUNCATOR 2918 0.1091 (327/2997) 0 * Os_TE_3935 Os_TE_3929 Chr9 976400 976399 - ENSPM4_OS 11610 0.0203 (59/2903) 0 * * Os_TE_3910 Chr9 971710 971711 - MPING 430 0.0003 (1/2962) 0 * * Os_TE_3908 Chr9 971441 971442 + TWIF 586 0.0041 (12/2913) 0 * * Os_TE_3904 Chr9 969105 969104 - NDNA2TNA_OS 346 0.0267 (79/2955) 0 * * Os_TE_3897 Chr9 965721 965722 + SPMLIKE 10989 0.0003 (1/2928) 0 * * Os_TE_3893 Chr9 964778 964779 - MPING 430 0.0003 (1/2988) 0 * Os_TE_3892 Os_TE_3892 Chr9 964776 964775 + MPING 430 0.0003 (1/2989) 0 * Os_TE_3893 Os_TE_3891 Chr9 964297 964298 - TYPEM 227 0.0003 (1/2991) 0 * Os_TE_3890 Os_TE_3890 Chr9 964296 964295 - ORSgTEMT02400179 221 0.0003 (1/2988) 0 * Os_TE_3891 Os_TE_3874 Chr9 962137 962138 - TEOS1 476 0.0010 (3/2916) 0 * * Os_TE_3859 Chr9 959786 959787 + OSTE33 1012 0.0013 (4/2985) 0 * * Os_TE_3849 Chr9 957075 957076 + COPIA2-LTR_OS 6433 0.0186 (55/2952) 0 * Os_TE_3848 Os_TE_3848 Chr9 957071 957070 - COPIA2-LTR_OS 6433 0.0196 (58/2965) 0 * Os_TE_3849 Os_TE_3817 Chr9 946408 946409 - COPIA2-LTR_OS 6433 0.0014 (4/2959) 0 * Os_TE_3816 Os_TE_3816 Chr9 946404 946403 + COPIA2-LTR_OS 6433 0.0010 (3/2960) 0 * Os_TE_3817 Os_TE_3812 Chr9 945622 945623 + MuDR2_OS 6770 0.0180 (53/2949) 0 * Os_TE_3811 Os_TE_3811 Chr9 945613 945612 - MuDR2_OS 6770 0.0163 (48/2944) 0 * Os_TE_3812 Os_TE_3802 Chr9 944528 944529 + ORSiTERTOOT00174 2237 0.0007 (2/2969) 0 * * Os_TE_3801 Chr9 944452 944453 + ORSgTEMT00500020 148 0.0003 (1/2962) 0 * * Os_TE_3800 Chr9 943916 943581 + ORSgTEMT00100531 325 0.3294 (980/2975) 1 Intact Os_TE_3799 Os_TE_3799 Chr9 943576 943914 + NDNA1TNA_OS 334 0.3270 (968/2960) 1 Intact Os_TE_3800 Os_TE_3779 Chr9 940899 940898 + STOWAWAY51_OS 246 0.0013 (4/2981) 0 * Os_TE_3778 Os_TE_3778 Chr9 940890 940891 - STOWAWAY51_OS 246 0.0017 (5/2975) 0 * Os_TE_3779 Os_TE_3777 Chr9 940731 940732 - INDITTO 263 0.0068 (20/2944) 0 * Os_TE_3776 Os_TE_3776 Chr9 940729 940728 + ORSgTETNOOT02316 263 0.0075 (22/2932) 0 * Os_TE_3777 Os_TE_3766 Chr9 939498 939499 - RIRE3_LTR 12054 0.0010 (3/2940) 0 * * Os_TE_3765 Chr9 939329 939330 + RETRO2_LTR 12874 0.6492 (1893/2916) 0 * Os_TE_3764 Os_TE_3764 Chr9 939325 939324 - RETRO2_LTR 12874 0.6590 (1948/2956) 0 * Os_TE_3765 Os_TE_3748 Chr9 930280 930281 + STOWAWAY8_OS 259 0.0017 (5/2956) 0 * Os_TE_3747 Os_TE_3747 Chr9 930279 930278 - STOWAWAY8_OS 259 0.0010 (3/2951) 0 * Os_TE_3748 Os_TE_3745 Chr9 929754 929755 + ORSgTEMT00500361 192 0.0017 (5/2978) 0 * Os_TE_3744 Os_TE_3744 Chr9 929752 929751 - GAIJIN 147 0.0017 (5/2981) 0 * Os_TE_3745 Os_TE_3741 Chr9 929216 929215 - STOWAWAY1_OS 149 0.0017 (5/2985) 0 * * Os_TE_3704 Chr9 919794 919795 + HELITRON3_OS 12693 0.0003 (1/2990) 0 * * Os_TE_3702 Chr9 918715 918716 + RETRO2_LTR 12874 0.0165 (49/2971) 0 * Os_TE_3701 Os_TE_3701 Chr9 918711 918710 - RETRO2_LTR 12874 0.0201 (60/2978) 0 * Os_TE_3702 Os_TE_3681 Chr9 905854 905521 + NDNA1TNA_OS 334 0.2557 (762/2980) 1 Intact Os_TE_3680 Os_TE_3680 Chr9 905519 905857 + ORSgTEMT00100531 325 0.2555 (763/2986) 1 Intact Os_TE_3681 Os_TE_3677 Chr9 904984 904985 - STOWAWAY46_OS 154 0.0007 (2/2854) 0 * * Os_TE_3663 Chr9 901616 901617 + ORSgTETNOOT00221 261 0.0014 (4/2925) 0 * * Os_TE_3640 Chr9 889227 889228 + ORSiOTOT00000037 220 0.1002 (300/2994) 0 * * Os_TE_3632 Chr9 877917 877918 - MuDR4_OS 7610 0.0007 (2/2878) 0 * Os_TE_3631 Os_TE_3631 Chr9 877908 877907 - MuDR4_OS 7610 0.0010 (3/2876) 0 * Os_TE_3632 Os_TE_3617 Chr9 871838 871839 + COPI2_LTR 4733 0.0003 (1/2979) 0 * * Os_TE_3614 Chr9 871541 871540 - RIRE3_LTR 12054 0.0017 (5/2988) 0 * * Os_TE_3607 Chr9 870067 870068 - RETROSAT3_LTR 11537 0.0124 (37/2980) 0 * Os_TE_3606 Os_TE_3606 Chr9 870063 870062 + RETROSAT2LTRA 3112 0.0118 (35/2978) 0 * Os_TE_3607 Os_TE_3562 Chr9 852158 852159 - TNR12 528 0.0024 (7/2935) 0 * * Os_TE_3538 Chr9 844898 844899 - MPING 430 0.0020 (6/2958) 0 * Os_TE_3537 Os_TE_3537 Chr9 844896 844895 + MPING 430 0.0020 (6/2965) 0 * Os_TE_3538 Os_TE_3536 Chr9 844712 844713 - ORSgTETN00200001 10994 0.0411 (121/2947) 0 * Os_TE_3535 Os_TE_3535 Chr9 844710 844709 + SPMLIKE 10989 0.0421 (124/2946) 0 * Os_TE_3536 Os_TE_3499 Chr9 829253 829252 - ORSiTERTOOT00123 1836 0.7254 (2153/2968) 0 * * Os_TE_3431 Chr9 799458 799457 - ORSgTEMT00100582 334 0.0335 (100/2981) 0 * * Os_TE_3383 Chr9 756068 756069 + MUDRN3_OS 903 0.4534 (1349/2975) 0 * Os_TE_3382 Os_TE_3382 Chr9 756060 756059 - MUDRN3_OS 903 0.4494 (1320/2937) 0 * Os_TE_3383 Os_TE_3376 Chr9 752056 752057 + SZ-48LTR 3632 0.6830 (2043/2991) 0 * * Os_TE_3299 Chr9 718018 718019 - SZ-36LTR 5825 0.0256 (75/2927) 0 * Os_TE_3298 Os_TE_3298 Chr9 718014 718013 + SZ-36LTR 5825 0.0242 (71/2934) 0 * Os_TE_3299 Os_TE_3290 Chr9 713316 713317 - SPMLIKE 10989 0.0007 (2/2994) 0 * Os_TE_3289 Os_TE_3289 Chr9 713314 713313 + SPMLIKE 10989 0.0010 (3/2996) 0 * Os_TE_3290 Os_TE_3238 Chr9 694912 694483 + MPING 430 0.0019 (5/2638) 1 Intact Os_TE_3237 Os_TE_3237 Chr9 694483 694912 - MPING 430 0.0019 (5/2593) 1 Intact Os_TE_3238 Os_TE_3224 Chr9 692045 692044 + RIREX_LTR 8828 0.0009 (2/2167) -1 * * Os_TE_3190 Chr9 675833 675832 + RIREX_LTR 8828 0.0313 (90/2880) 0 * * Os_TE_3188 Chr9 675711 675712 + TELIA 141 0.0007 (2/2879) 0 * Os_TE_3187 Os_TE_3187 Chr9 675703 675702 - TELIA 141 0.0007 (2/2884) 0 * Os_TE_3188 Os_TE_3186 Chr9 675681 675682 - RIREX_LTR 8828 0.0138 (40/2906) 0 * Os_TE_3185 Os_TE_3185 Chr9 675677 675676 + RIREX_LTR 8828 0.0146 (42/2867) 0 * Os_TE_3186 Os_TE_3161 Chr9 669714 665720 + MDR2 6967 0.2992 (859/2871) 1 Intact Os_TE_3160 Os_TE_3160 Chr9 665720 669714 - MDR2 6967 0.2996 (861/2874) 1 Intact Os_TE_3161 Os_TE_3158 Chr9 663308 663309 + COPIA2-LTR_OS 6433 0.0213 (63/2952) 0 * Os_TE_3157 Os_TE_3157 Chr9 663304 663303 - COPIA2-LTR_OS 6433 0.0251 (74/2951) 0 * Os_TE_3158 Os_TE_3154 Chr9 660344 660345 - RIRE2_LTR 11306 0.0003 (1/2872) 0 * * Os_TE_3148 Chr9 656666 656667 + MPING 430 0.0003 (1/2992) 0 * Os_TE_3147 Os_TE_3147 Chr9 656664 656663 - MPING 430 0.0003 (1/2993) 0 * Os_TE_3148 Os_TE_3140 Chr9 655339 655340 - SZ-22_LTR 4403 0.0003 (1/2895) 0 * * Os_TE_3130 Chr9 653715 653716 + MPING 430 0.0016 (4/2574) 0 * Os_TE_3129 Os_TE_3129 Chr9 653713 653712 - MPING 430 0.0015 (4/2678) 0 * Os_TE_3130 Os_TE_3128 Chr9 652332 652333 + STOWAWAY51_OS 246 0.0011 (3/2680) 0 * * Os_TE_3124 Chr9 649575 649574 - TRUNCATOR 2918 0.1566 (468/2989) 0 * * Os_TE_3117 Chr9 647818 647817 - INDITTO 263 0.0834 (235/2818) 0 * * Os_TE_3115 Chr9 647625 647626 - ORSgTEMT01601696 238 0.0004 (1/2374) 0 * * Os_TE_3114 Chr9 647565 647564 - MPING 430 0.0004 (1/2286) 0 * * Os_TE_3112 Chr9 647545 647546 + ORSgTEMT01601591 242 0.0004 (1/2271) -1 * * Os_TE_3104 Chr9 645084 645085 - MUDRN1_OS 764 0.0459 (124/2702) 0 * * Os_TE_3058 Chr9 634241 634242 + RIREX_LTR 8828 0.0017 (5/2983) 0 * Os_TE_3057 Os_TE_3057 Chr9 634237 634236 - RIREX_LTR 8828 0.0013 (4/2987) 0 * Os_TE_3058 Os_TE_3055 Chr9 633835 633836 - COPI2_LTR 4733 0.0003 (1/2970) 0 * Os_TE_3054 Os_TE_3054 Chr9 633830 633829 - COPI2_LTR 4733 0.0003 (1/2973) 0 * Os_TE_3055 Os_TE_3050 Chr9 632645 632646 + RIREX_LTR 8828 0.0003 (1/2992) 0 * Os_TE_3049 Os_TE_3049 Chr9 632641 632640 - RIREX_LTR 8828 0.0003 (1/2987) 0 * Os_TE_3050 Os_TE_3025 Chr9 624494 624495 - ORSiTETNOOT00216 3569 0.0013 (4/2993) 0 * Os_TE_3024 Os_TE_3024 Chr9 624487 624486 + TWIFBIG 3567 0.0010 (3/2989) 0 * Os_TE_3025 Os_TE_3019 Chr9 622804 622805 - AMYLTP 383 0.0014 (4/2940) 0 * * Os_TE_2956 Chr9 603692 603693 - ORSiTERT00200141 11375 0.0010 (2/2080) -1 * * Os_TE_2934 Chr9 588066 558795 - ORSgTERT00201216 11284 0.2482 (707/2848) 1 Intact Os_TE_2923 Os_TE_2923 Chr9 558795 588066 - RIRE2_LTR 11306 0.2472 (704/2848) 1 Intact Os_TE_2934 Os_TE_2922 Chr9 558468 550119 + RIREX_LTR 8828 0.2499 (709/2837) 1 Intact * Os_TE_2818 Chr9 476253 476252 - RETROSAT3_LTR 11537 0.0250 (75/2995) 0 * * Os_TE_2729 Chr9 438116 438117 - SZ-22_LTR 4403 0.0073 (22/2995) 0 * Os_TE_2728 Os_TE_2728 Chr9 438112 438111 + ORSiTERTOOT00226 792 0.0073 (22/2995) 0 * Os_TE_2729 Os_TE_2707 Chr9 428615 428616 - COPIA2-LTR_OS 6433 0.0007 (2/3000) 0 * * Os_TE_2693 Chr9 420497 420498 + RETRO1_LTR 8314 0.0003 (1/2985) 0 * Os_TE_2692 Os_TE_2692 Chr9 420493 420492 - RETRO1_LTR 8314 0.0003 (1/2984) 0 * Os_TE_2693 Os_TE_2671 Chr9 412080 412081 + ORSiTERTOOT00296 5553 0.0027 (8/2982) 0 * Os_TE_2670 Os_TE_2670 Chr9 412076 412075 - SC-3_LTR 5748 0.0027 (8/2985) 0 * Os_TE_2671 Os_TE_2668 Chr9 410328 410329 + COPIA2-LTR_OS 6433 0.0011 (1/945) 0 * Os_TE_2667 Os_TE_2667 Chr9 410324 410323 - COPIA2-LTR_OS 6433 0.0011 (1/945) 0 * Os_TE_2668 Os_TE_2663 Chr9 407155 407154 - Cassandra_OS-LTR 764 0.0168 (16/950) 0 * * Os_TE_2643 Chr9 378405 390629 - TEMPINDAS 4259 0.7907 (801/1013) 1 Intact * Os_TE_2638 Chr9 374125 365587 + RIREX_LTR 8828 0.3096 (922/2978) 1 Intact * Os_TE_2635 Chr9 373125 373126 - RIREX_LTR 8828 0.0072 (7/968) 0 * * Os_TE_2620 Chr9 364908 349874 + GYPSY1-LTR_OS 8900 0.3063 (913/2981) 1 Intact Os_TE_2592 Os_TE_2592 Chr9 349874 364908 - GYPSY1-LTR_OS 8900 0.3108 (927/2983) 1 Intact Os_TE_2620 Os_TE_2588 Chr9 348288 348289 - RETROSAT2LTR 12796 0.0279 (82/2939) 0 * * Os_TE_2586 Chr9 347195 347194 + ORSiTETNOOT00107 906 0.0003 (1/2989) 0 * * Os_TE_2585 Chr9 347130 347131 + RIREX_LTR 8828 0.0010 (3/2991) 0 * Os_TE_2584 Os_TE_2584 Chr9 347126 347125 - RIREX_LTR 8828 0.0010 (3/2986) 0 * Os_TE_2585 Os_TE_2490 Chr9 291845 291846 + ORSiTERTOOT00296 5553 0.0017 (5/2986) 0 * Os_TE_2489 Os_TE_2489 Chr9 291841 291840 - SC-3_LTR 5748 0.0017 (5/2991) 0 * Os_TE_2490 Os_TE_2425 Chr9 269438 269439 - STOWAWAY12_OS 312 0.7045 (2108/2992) 0 * * Os_TE_2421 Chr9 266873 266874 - SC-4_LTR 5218 0.0003 (1/2997) 0 * Os_TE_2420 Os_TE_2420 Chr9 266869 266868 + SC-4_LTR 5218 0.0003 (1/2995) 0 * Os_TE_2421 Os_TE_2399 Chr9 262137 262136 - TRUNCATOR2_LTR 2904 0.4316 (1151/2667) 0 * * Os_TE_2398 Chr9 262030 262031 + RETROSAT2LTRA 3112 0.0015 (4/2721) 0 * Os_TE_2397 Os_TE_2397 Chr9 262026 262025 - RETROSAT2LTRA 3112 0.0009 (2/2126) 0 * Os_TE_2398 Os_TE_2389 Chr9 257724 257723 - TRUNCATOR 2918 0.4511 (1334/2957) 0 * Os_TE_2388 Os_TE_2388 Chr9 257723 257724 + TRUNCATOR 2918 0.4574 (1364/2982) 0 * Os_TE_2389 Os_TE_2387 Chr9 257350 257349 + RIRE1_LTR 8322 0.7025 (2087/2971) 0 * * Os_TE_2384 Chr9 256137 256138 + OSTE33 1012 0.7003 (2077/2966) 0 * Os_TE_2383 Os_TE_2383 Chr9 256128 256127 + OSTE33 1012 0.7021 (2091/2978) 0 * Os_TE_2384 Os_TE_2376 Chr9 252280 252279 + RETRO1_LTR 8314 0.0004 (1/2711) 0 * * Os_TE_2375 Chr9 251868 251869 - RIRE3A_LTR 10580 0.1220 (155/1271) 0 * * Os_TE_2358 Chr9 242858 242859 + RIREX_LTR 8828 0.0003 (1/2979) 0 * * Os_TE_2266 Chr9 151663 151662 + ORSgTEMT01600491 234 0.0004 (1/2589) 0 * * Os_TE_2261 Chr9 147065 147066 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_2260 Os_TE_2260 Chr9 147061 147060 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_2261 Os_TE_2259 Chr9 146901 146900 - ORSgTEMT03800066 376 0.7029 (2101/2989) 0 * * Os_TE_2256 Chr9 144547 144783 - ORSgTEMT01601208 238 0.5455 (677/1241) 1 Intact * Os_TE_123080 Chr8 28441817 28441816 - ORSgTEMT00901723 248 0.5031 (1471/2924) 0 * * Os_TE_123078 Chr8 28440537 28440538 + ORSiTERTOOT00296 5553 0.0020 (3/1522) 0 * * Os_TE_122953 Chr8 28409088 28409089 - MuDR3_OS 8604 0.0007 (2/2991) 0 * * Os_TE_122947 Chr8 28405778 28405779 + SC-8_LTR 4951 0.0016 (1/642) -1 * * Os_TE_122941 Chr8 28401948 28406958 - SZ-54_LTR 5203 0.3129 (933/2982) 1 Intact * Os_TE_122930 Chr8 28392154 28392155 + RETROSAT4_LTR 13504 0.1870 (559/2990) 0 * * Os_TE_122927 Chr8 28391063 28391064 - SZ-67LTR 1540 0.4958 (1477/2979) 0 * Os_TE_122926 Os_TE_122926 Chr8 28391059 28391058 + SZ-67LTR 1540 0.4837 (1426/2948) 0 * Os_TE_122927 Os_TE_122905 Chr8 28380138 28380139 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_122904 Os_TE_122904 Chr8 28380134 28380133 - COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_122905 Os_TE_122903 Chr8 28378936 28378937 + COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_122902 Os_TE_122902 Chr8 28378932 28378931 - COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_122903 Os_TE_122891 Chr8 28375274 28375275 - MPING 430 0.0003 (1/2996) 0 * Os_TE_122890 Os_TE_122890 Chr8 28375272 28375271 + MPING 430 0.0003 (1/2995) 0 * Os_TE_122891 Os_TE_122885 Chr8 28369155 28369154 + COPI2_LTR 4733 0.0003 (1/2980) 0 * * Os_TE_122875 Chr8 28368406 28368407 + TRUNCATOR 2918 0.0003 (1/2992) 0 * * Os_TE_122874 Chr8 28366776 28366777 - ORSgTETNOOT00544 147 0.0007 (2/2963) 0 * Os_TE_122873 Os_TE_122873 Chr8 28366774 28366773 + ORSgTETNOOT01275 140 0.0003 (1/2976) 0 * Os_TE_122874 Os_TE_122861 Chr8 28359551 28359327 - ORSgTEMT02400092 225 0.3218 (961/2986) 1 Intact Os_TE_122860 Os_TE_122860 Chr8 28359327 28359551 - ORSgTEMT02400246 177 0.3187 (952/2987) 1 Intact Os_TE_122861 Os_TE_122804 Chr8 28325304 28325305 + COPIA2-LTR_OS 6433 0.0010 (3/2980) 0 * Os_TE_122803 Os_TE_122803 Chr8 28325300 28325299 - COPIA2-LTR_OS 6433 0.0007 (2/2983) 0 * Os_TE_122804 Os_TE_122802 Chr8 28324631 28324632 - ORSgTEMT01600223 220 0.0007 (2/2993) 0 * Os_TE_122801 Os_TE_122801 Chr8 28324626 28324625 - ORSgTEMT01601208 238 0.0007 (2/2992) 0 * Os_TE_122802 Os_TE_122800 Chr8 28324623 28324624 - ORSgTEMT01600639 228 0.0007 (2/2992) 0 * * Os_TE_122794 Chr8 28323342 28323343 + COPIA2-LTR_OS 6433 0.0003 (1/2930) 0 * Os_TE_122793 Os_TE_122793 Chr8 28323338 28323337 - COPIA2-LTR_OS 6433 0.0004 (1/2811) 0 * Os_TE_122794 Os_TE_122764 Chr8 28311985 28311986 - ORSiTERTOOT00366 5449 0.4055 (1214/2994) 0 * Os_TE_122763 Os_TE_122763 Chr8 28311981 28311980 + ORSiTERTOOT00366 5449 0.4038 (1209/2994) 0 * Os_TE_122764 Os_TE_122752 Chr8 28305335 28305336 - ORSiTETNOOT00144 607 0.0004 (1/2619) 0 * Os_TE_122751 Os_TE_122751 Chr8 28305328 28305327 + TWIF 586 0.0007 (2/2679) 0 * Os_TE_122752 Os_TE_122735 Chr8 28293447 28293290 - ORSgTEMT00100583 156 0.3244 (965/2975) 1 Intact * Os_TE_122729 Chr8 28290364 28290363 - STOWAWAY51_OS 246 0.2427 (722/2975) 0 * Os_TE_122728 Os_TE_122728 Chr8 28290361 28290362 - STOWAWAY51_OS 246 0.2389 (708/2963) 0 * Os_TE_122729 Os_TE_122713 Chr8 28286950 28286949 - STOWAWAY51_OS 246 0.0007 (2/2989) 0 * Os_TE_122712 Os_TE_122712 Chr8 28286944 28286945 + STOWAWAY51_OS 246 0.0003 (1/2981) 0 * Os_TE_122713 Os_TE_122700 Chr8 28280165 28280166 - RETROFIT_LTR 4866 0.0003 (1/2995) 0 * Os_TE_122699 Os_TE_122699 Chr8 28280162 28280161 + ORSiTERTOOT00033 4884 0.0003 (1/2992) 0 * Os_TE_122700 Os_TE_122694 Chr8 28279219 28279220 - ORSgTETN00200001 10994 0.0003 (1/2994) 0 * Os_TE_122693 Os_TE_122693 Chr8 28279217 28279216 + SPMLIKE 10989 0.0003 (1/2997) 0 * Os_TE_122694 Os_TE_122686 Chr8 28276867 28276866 - ORSgTEMT00501447 126 0.0007 (2/2965) 0 * Os_TE_122685 Os_TE_122685 Chr8 28276861 28276862 - ORSgTEMT01702045 137 0.0007 (2/2963) -1 * Os_TE_122686 Os_TE_122664 Chr8 28271558 28271557 + ORSgTEMT01602119 229 0.0007 (2/2997) 0 * Os_TE_122663 Os_TE_122663 Chr8 28271552 28271553 - ORSgTEMT01602413 239 0.0003 (1/2997) 0 * Os_TE_122664 Os_TE_122661 Chr8 28271247 28271246 - ORSgTEMT01800105 452 0.0007 (2/2994) 0 * * Os_TE_122660 Chr8 28270561 28270562 + TEMPINDAS 4259 0.0003 (1/2998) 0 * * Os_TE_122657 Chr8 28270099 28270098 + ORSgTEMT00501356 145 0.0003 (1/2996) 0 * * Os_TE_122653 Chr8 28264187 28264186 - NDNA1TNA_OS 334 0.0007 (2/2985) 0 * * Os_TE_122636 Chr8 28262557 28262556 + RPO_OS 1983 0.0007 (2/2971) 0 * * Os_TE_122633 Chr8 28259860 28259861 + STOWAWAY17_OS 259 0.0004 (1/2457) -1 * * Os_TE_122595 Chr8 28254992 28254993 - ORSgTEMT02400179 221 0.0003 (1/2981) 0 * * Os_TE_122593 Chr8 28254919 28254920 - OSTE33 1012 0.0013 (4/2980) 0 * Os_TE_122592 Os_TE_122592 Chr8 28254911 28254910 - OSTE33 1012 0.0010 (3/2981) 0 * Os_TE_122593 Os_TE_122591 Chr8 28254839 28254840 + ORSgTEMT00600192 355 0.0007 (2/2991) 0 * * Os_TE_122581 Chr8 28253219 28253218 + SC-8_LTR 4951 0.0007 (2/2899) 0 * * Os_TE_122545 Chr8 28239285 28239284 + TREP219 104 0.0003 (1/2971) 0 * * Os_TE_122540 Chr8 28237538 28226991 - ENSPM4_OS 11610 0.3246 (931/2868) 1 Intact Os_TE_122535 Os_TE_122535 Chr8 28226989 28237535 + ENSPM4_OS 11610 0.3240 (951/2935) 1 Intact Os_TE_122540 Os_TE_122511 Chr8 28218324 28218325 + TYPEU4 402 0.0007 (2/2998) 0 * Os_TE_122510 Os_TE_122510 Chr8 28218316 28218315 - TYPEU1 380 0.0007 (2/2998) 0 * Os_TE_122511 Os_TE_122507 Chr8 28216537 28216536 - SC-3_LTR 5748 0.0003 (1/2995) 0 * * Os_TE_122484 Chr8 28203907 28203906 - TRUNCATOR 2918 0.6768 (1937/2862) 0 * Os_TE_122483 Os_TE_122483 Chr8 28203906 28203907 + TRUNCATOR 2918 0.6810 (1992/2925) 0 * Os_TE_122484 Os_TE_122477 Chr8 28200724 28199339 + SZ-29LTR 1393 0.3465 (1014/2926) 1 Intact * Os_TE_122474 Chr8 28197732 28195894 + MERMITE18B 1306 0.3376 (1007/2983) 1 Intact * Os_TE_122449 Chr8 28182515 28182516 + RIREX_LTR 8828 0.2777 (827/2978) 0 * * Os_TE_122444 Chr8 28177676 28177675 + ORSgTEMT01601525 239 0.0010 (3/2984) 0 * Os_TE_122443 Os_TE_122443 Chr8 28177673 28177674 - ORSgTEMT01602413 239 0.0010 (3/2978) 0 * Os_TE_122444 Os_TE_122436 Chr8 28170964 28170965 + SZ-67LTR 1540 0.0014 (4/2776) 0 * Os_TE_122435 Os_TE_122435 Chr8 28170960 28170959 - SZ-67LTR 1540 0.0024 (7/2915) 0 * Os_TE_122436 Os_TE_122429 Chr8 28170575 28170576 - ORSgTETNOOT01930 140 0.0030 (3/996) 0 * Os_TE_122428 Os_TE_122428 Chr8 28170567 28170566 + ORSgTEMT00500201 140 0.0010 (3/2900) 0 * Os_TE_122429 Os_TE_122426 Chr8 28170385 28170532 + ORSgTEMT01701591 154 0.6004 (978/1629) 1 Intact * Os_TE_122422 Chr8 28168670 28169641 + CACTA-D 1038 0.5501 (1000/1818) 1 Intact * Os_TE_122419 Chr8 28168165 28168164 + ORSgTEMT00901844 250 0.6600 (1914/2900) 0 * Os_TE_122418 Os_TE_122418 Chr8 28168161 28168162 - ORSgTEMT00900741 219 0.6687 (1994/2982) 0 * Os_TE_122419 Os_TE_122417 Chr8 28167707 28167708 + MPING 430 0.0021 (6/2830) 0 * Os_TE_122416 Os_TE_122416 Chr8 28167705 28167704 - MPING 430 0.0018 (5/2809) 0 * Os_TE_122417 Os_TE_122414 Chr8 28167163 28167164 + ORSgTEMT00500260 149 0.0036 (9/2486) 0 * * Os_TE_122410 Chr8 28166475 28166476 - UNIQUE 158 0.0011 (3/2768) 0 * * Os_TE_122406 Chr8 28162877 28162878 - AMYLTP 383 0.4036 (1197/2966) 0 * * Os_TE_122367 Chr8 28149604 28149603 - ORSgTEMT01602413 239 0.0010 (3/2902) 0 * * Os_TE_122361 Chr8 28142147 28142148 - ORSiTERTOOT00402 2660 0.0003 (1/2996) 0 * Os_TE_122360 Os_TE_122360 Chr8 28142143 28142142 + ORSiTERTOOT00402 2660 0.0003 (1/2995) 0 * Os_TE_122361 Os_TE_122358 Chr8 28140697 28140696 - TRUNCATOR 2918 0.0003 (1/2993) 0 * Os_TE_122357 Os_TE_122357 Chr8 28140696 28140697 + TRUNCATOR 2918 0.0003 (1/2990) 0 * Os_TE_122358 Os_TE_122332 Chr8 28130468 28130469 - COPIA2-LTR_OS 6433 0.0004 (1/2759) 0 * * Os_TE_122330 Chr8 28130411 28130412 + RIREX_LTR 8828 0.0004 (1/2778) 0 * * Os_TE_122292 Chr8 28111845 28111846 - COPI2_LTR 4733 0.0003 (1/2999) 0 * Os_TE_122291 Os_TE_122291 Chr8 28111841 28111840 + COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_122292 Os_TE_122284 Chr8 28109705 28109704 - ORSgTEMT00901345 248 0.0011 (3/2838) 0 * Os_TE_122283 Os_TE_122283 Chr8 28109703 28109704 - ORSgTEMT00901363 251 0.0011 (3/2794) 0 * Os_TE_122284 Os_TE_122267 Chr8 28106012 28106011 - ORSgTEMT01602413 239 0.0010 (3/2988) 0 * * Os_TE_122255 Chr8 28083423 28083424 + COPI2_LTR 4733 0.0007 (2/2989) 0 * Os_TE_122254 Os_TE_122254 Chr8 28083419 28083418 - COPI2_LTR 4733 0.0010 (3/2988) 0 * Os_TE_122255 Os_TE_122247 Chr8 28081573 28081574 + ORSgTEMT00100272 356 0.0007 (2/2986) 0 * * Os_TE_122233 Chr8 28071202 28071203 + STOWAWAY16_OS 228 0.6928 (2034/2936) 0 * * Os_TE_122227 Chr8 28069106 28069107 + COPIA2-LTR_OS 6433 0.0038 (11/2924) 0 * Os_TE_122226 Os_TE_122226 Chr8 28069102 28069101 - COPIA2-LTR_OS 6433 0.0040 (12/2992) 0 * Os_TE_122227 Os_TE_122225 Chr8 28068623 28068622 + ORSgTEMT01600421 237 0.0031 (3/974) -1 * * Os_TE_122224 Chr8 28068462 28068463 - ORSgTEMT01601493 303 0.0004 (1/2524) -1 * * Os_TE_122216 Chr8 28064784 28064783 - ORSgTEMT01602413 239 0.0010 (3/2920) 0 * * Os_TE_122214 Chr8 28064346 28064347 - OSLINE1-2 7128 0.0429 (127/2961) 0 * * Os_TE_122192 Chr8 28051290 28051291 - ORSgTEMT01602152 236 0.0010 (3/2951) 0 * * Os_TE_122178 Chr8 28044388 28044387 + STOWAWAY9_OS 235 0.0010 (3/2989) 0 * Os_TE_122177 Os_TE_122177 Chr8 28044387 28044388 + ORSgTEMT01400040 213 0.0010 (3/2986) 0 * Os_TE_122178 Os_TE_122176 Chr8 28043179 28043178 - STOWAWAY51_OS 246 0.0003 (1/2966) 0 * Os_TE_122175 Os_TE_122175 Chr8 28043173 28043174 + STOWAWAY51_OS 246 0.0003 (1/2964) 0 * Os_TE_122176 Os_TE_122171 Chr8 28041995 28041994 + ORSgTEMT01601018 231 0.0010 (3/2962) 0 * * Os_TE_122157 Chr8 28039418 28039419 + COPIA2-LTR_OS 6433 0.0031 (8/2610) 0 * Os_TE_122156 Os_TE_122156 Chr8 28039414 28039413 - COPIA2-LTR_OS 6433 0.0065 (17/2633) 0 * Os_TE_122157 Os_TE_122143 Chr8 28021960 28021959 - ORSgTEMT00900099 250 0.0010 (3/2942) 0 * Os_TE_122142 Os_TE_122142 Chr8 28021958 28021959 - ORSgTEMT00901345 248 0.0007 (2/2944) 0 * Os_TE_122143 Os_TE_122141 Chr8 28021381 28021380 - RIREX_LTR 8828 0.0003 (1/2951) 0 * * Os_TE_122139 Chr8 28020657 28020656 + OsSN3 183 0.0010 (3/2976) 0 * * Os_TE_122114 Chr8 27999716 27999715 - F569 228 0.0010 (3/2960) 0 * * Os_TE_122102 Chr8 27991473 27991474 + TELIA 141 0.0003 (1/2939) 0 * Os_TE_122101 Os_TE_122101 Chr8 27991466 27991465 - TELIA 141 0.0003 (1/2945) 0 * Os_TE_122102 Os_TE_122097 Chr8 27990782 27977830 + RETRO2_LTR 12874 0.0402 (120/2986) 1 Intact Os_TE_122081 Os_TE_122081 Chr8 27977830 27990782 - RETRO2_LTR 12874 0.0405 (121/2987) 1 Intact Os_TE_122097 Os_TE_122078 Chr8 27976771 27976772 + ORSiTERTOOT00381 4988 0.0034 (10/2947) 0 * Os_TE_122077 Os_TE_122077 Chr8 27976767 27976766 - SC-8_LTR 4951 0.0034 (10/2949) 0 * Os_TE_122078 Os_TE_122057 Chr8 27970970 27970971 + SINE03_OS 360 0.0010 (3/2945) 0 * * Os_TE_122053 Chr8 27966036 27966037 + HARB-N1_OS 2589 0.0020 (6/2993) 0 * * Os_TE_122047 Chr8 27964631 27964632 - STOWAWAY1_OS 149 0.0010 (3/2992) 0 * Os_TE_122046 Os_TE_122046 Chr8 27964630 27964629 + STOWAWAY1_OS 149 0.0010 (3/2995) 0 * Os_TE_122047 Os_TE_122025 Chr8 27944556 27944557 - TYPEM 227 0.0010 (3/2998) 0 * Os_TE_122024 Os_TE_122024 Chr8 27944554 27944553 - ORSgTEMT02400179 221 0.0010 (3/2999) 0 * Os_TE_122025 Os_TE_122019 Chr8 27941207 27941206 + CLOUD-7 495 0.0010 (3/2984) 0 * Os_TE_122018 Os_TE_122018 Chr8 27941205 27941206 + CLOUD-7 495 0.0007 (2/2983) 0 * Os_TE_122019 Os_TE_122013 Chr8 27938147 27938148 + TWIF 586 0.0003 (1/2993) 0 * Os_TE_122012 Os_TE_122012 Chr8 27938140 27938139 - ORSiTETNOOT00141 607 0.0003 (1/2992) 0 * Os_TE_122013 Os_TE_122001 Chr8 27933004 27933005 - COPIA2-LTR_OS 6433 0.0511 (153/2992) 0 * Os_TE_122000 Os_TE_122000 Chr8 27933000 27932999 + COPIA2-LTR_OS 6433 0.0508 (152/2990) 0 * Os_TE_122001 Os_TE_121986 Chr8 27927428 27927664 - ORSgTEMT01601731 238 0.3214 (955/2971) 1 Intact * Os_TE_121950 Chr8 27912158 27912159 - COWARD 200 0.0007 (2/2995) 0 * * Os_TE_121946 Chr8 27909152 27909153 - BAJIELTR 4500 0.0003 (1/2990) 0 * * Os_TE_121945 Chr8 27905396 27905395 - SC-3_LTR 5748 0.0023 (7/2994) 0 * * Os_TE_121937 Chr8 27899721 27899722 + TWIFB1 3737 0.0007 (2/2994) 0 * * Os_TE_121928 Chr8 27895009 27895008 - TELIA 141 0.5251 (1570/2990) 0 * * Os_TE_121924 Chr8 27890598 27890599 + SC-7_LTR 4431 0.5256 (1570/2987) 0 * Os_TE_121923 Os_TE_121923 Chr8 27890594 27890593 - SC-7_LTR 4431 0.5264 (1575/2992) 0 * Os_TE_121924 Os_TE_121922 Chr8 27887319 27887318 + ORSgTEMT00500201 140 0.0010 (3/2997) 0 * Os_TE_121921 Os_TE_121921 Chr8 27887315 27887316 - ORSgTEMT00501447 126 0.0010 (3/2996) 0 * Os_TE_121922 Os_TE_121896 Chr8 27875195 27875194 + ORSgTETNOOT00908 242 0.0007 (2/2985) 0 * * Os_TE_121878 Chr8 27868347 27868346 + STOWAWAY51_OS 246 0.0007 (2/2919) 0 * Os_TE_121877 Os_TE_121877 Chr8 27868344 27868345 + ORSgTEMT01601591 242 0.0010 (3/2911) 0 * Os_TE_121878 Os_TE_121873 Chr8 27866502 27866503 - SC-8_LTR 4951 0.0003 (1/2942) 0 * Os_TE_121872 Os_TE_121872 Chr8 27866498 27866497 + SC-8_LTR 4951 0.0003 (1/2969) 0 * Os_TE_121873 Os_TE_121870 Chr8 27863058 27863059 + SC-8_LTR 4951 0.0003 (1/2978) 0 * Os_TE_121869 Os_TE_121869 Chr8 27863054 27863053 - SC-8_LTR 4951 0.0003 (1/2979) 0 * Os_TE_121870 Os_TE_121868 Chr8 27858808 27858807 + TNR11 811 0.0010 (3/2988) 0 * * Os_TE_121863 Chr8 27857647 27857646 + TWIF 586 0.0003 (1/2885) 0 * * Os_TE_121857 Chr8 27856395 27856394 - MDR2 6967 0.0625 (187/2991) 0 * * Os_TE_121834 Chr8 27843821 27843820 + MPING 430 0.0013 (4/2979) 0 * * Os_TE_121811 Chr8 27834570 27834569 + ORSiTEMT03300001 145 0.0010 (3/2984) 0 * * Os_TE_121806 Chr8 27833716 27833717 + CPSC4A_LTR 5182 0.0507 (151/2976) 0 * Os_TE_121805 Os_TE_121805 Chr8 27833709 27833708 - CPSC4A_LTR 5182 0.0514 (153/2979) 0 * Os_TE_121806 Os_TE_121800 Chr8 27831164 27831163 + ORSgTEMT01400031 216 0.0010 (3/2969) 0 * * Os_TE_121798 Chr8 27830882 27830881 - ORSgTETNOOT00623 140 0.0010 (3/2958) 0 * * Os_TE_121771 Chr8 27822062 27822061 + ORSgTEMT01601122 212 0.0010 (3/2969) 0 * * Os_TE_121770 Chr8 27821748 27821749 + INDITTO 263 0.0296 (88/2973) 0 * Os_TE_121769 Os_TE_121769 Chr8 27821746 27821745 - INDITTO 263 0.0279 (83/2977) 0 * Os_TE_121770 Os_TE_121761 Chr8 27820978 27820977 + STOWAWAY44_OS 240 0.0003 (1/2972) 0 * * Os_TE_121756 Chr8 27820091 27820090 - ORSgTETNOOT01072 229 0.0010 (3/2995) 0 * * Os_TE_121753 Chr8 27818004 27818005 - ORSgTEMT01600578 239 0.0010 (3/2997) 0 * * Os_TE_121752 Chr8 27817240 27817239 + STOWAWAY51_OS 246 0.0050 (15/2979) 0 * Os_TE_121751 Os_TE_121751 Chr8 27817234 27817235 - STOWAWAY51_OS 246 0.0054 (16/2987) 0 * Os_TE_121752 Os_TE_121747 Chr8 27813565 27813564 - SC-3_LTR 5748 0.0003 (1/2983) 0 * * Os_TE_121729 Chr8 27801221 27801222 + ORSiTERTOOT00074 4935 0.0013 (4/2997) 0 * Os_TE_121728 Os_TE_121728 Chr8 27801217 27801216 - ORSiTERTOOT00074 4935 0.0013 (4/2996) 0 * Os_TE_121729 Os_TE_121725 Chr8 27798484 27798483 + ORSgTEMT01702111 154 0.0010 (3/2995) 0 * * Os_TE_121672 Chr8 27775158 27775159 + COPIA2-LTR_OS 6433 0.0003 (1/2960) 0 * * Os_TE_121627 Chr8 27755173 27754791 - AMYLTP 383 0.3084 (913/2960) 1 Intact Os_TE_121624 Os_TE_121624 Chr8 27754790 27755173 + AMYLTP 383 0.3152 (939/2979) 1 Intact Os_TE_121627 Os_TE_121533 Chr8 27737208 27737209 - NDNA1TNA_OS 334 0.0010 (3/2999) 0 * * Os_TE_121529 Chr8 27736661 27736338 + ORSgTEMT00101674 340 0.3560 (958/2691) 1 Intact * Os_TE_121512 Chr8 27731814 27731815 + RIREX_LTR 8828 0.0016 (3/1898) 0 * * Os_TE_121462 Chr8 27713149 27713148 + ORSgTERT00200924 3299 0.0003 (1/2970) 0 * * Os_TE_121460 Chr8 27708122 27708121 - ORSgTEMT02900061 318 0.0020 (6/2978) 0 * Os_TE_121459 Os_TE_121459 Chr8 27708121 27708122 - STOWAWAY12_OS 312 0.0013 (4/2964) 0 * Os_TE_121460 Os_TE_121452 Chr8 27702154 27702155 + RETROSAT2LTR 12796 0.2855 (813/2848) 0 * Os_TE_121451 Os_TE_121451 Chr8 27702152 27702151 - RETROSAT2LTR 12796 0.3288 (984/2993) 0 * Os_TE_121452 Os_TE_121439 Chr8 27697398 27697399 + ORSiTERTOOT00296 5553 0.0003 (1/2931) 0 * Os_TE_121438 Os_TE_121438 Chr8 27697394 27697393 - SC-3_LTR 5748 0.0003 (1/2944) 0 * Os_TE_121439 Os_TE_121434 Chr8 27693842 27693843 - SC-3_LTR 5748 0.0003 (1/2997) 0 * Os_TE_121433 Os_TE_121433 Chr8 27693838 27693837 + ORSiTERTOOT00296 5553 0.0003 (1/2997) 0 * Os_TE_121434 Os_TE_121425 Chr8 27689100 27689099 + AMYLTP 383 0.1130 (320/2831) 0 * * Os_TE_121410 Chr8 27684139 27684138 + SC-8_LTR 4951 0.0007 (2/2994) 0 * * Os_TE_121404 Chr8 27680272 27680273 + SZ-55_LTR 10318 0.0003 (1/2993) 0 * * Os_TE_121401 Chr8 27678546 27678547 - SC-8_LTR 4951 0.0004 (1/2842) 0 * Os_TE_121400 Os_TE_121400 Chr8 27678542 27678541 + SC-8_LTR 4951 0.0004 (1/2843) 0 * Os_TE_121401 Os_TE_121396 Chr8 27671860 27671861 - SC-3_LTR 5748 0.0003 (1/2999) 0 * Os_TE_121395 Os_TE_121395 Chr8 27671856 27671855 + ORSiTERTOOT00296 5553 0.0003 (1/2999) 0 * Os_TE_121396 Os_TE_121392 Chr8 27669595 27669594 - SC-8_LTR 4951 0.0033 (10/2992) 0 * * Os_TE_121384 Chr8 27664570 27664571 + SZ-55_LTR 10318 0.0007 (2/2942) 0 * * Os_TE_121381 Chr8 27663160 27663159 + ORSiTERTOOT00402 2660 0.0013 (4/2990) 0 * * Os_TE_121374 Chr8 27662080 27662081 - COPIA2-LTR_OS 6433 0.0003 (1/2894) 0 * Os_TE_121373 Os_TE_121373 Chr8 27662076 27662075 + COPIA2-LTR_OS 6433 0.0003 (1/2902) 0 * Os_TE_121374 Os_TE_121350 Chr8 27649633 27649634 - OSR3_LTR 5201 0.0003 (1/2997) 0 * Os_TE_121349 Os_TE_121349 Chr8 27649629 27649628 + OSR3_LTR 5201 0.0003 (1/2998) 0 * Os_TE_121350 Os_TE_121347 Chr8 27648742 27648743 + COWARD-3 221 0.0010 (3/2994) 0 * Os_TE_121346 Os_TE_121346 Chr8 27648740 27648739 - COWARD-3 221 0.0010 (3/2991) 0 * Os_TE_121347 Os_TE_121339 Chr8 27638737 27638738 - COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_121338 Os_TE_121338 Chr8 27638733 27638732 + COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_121339 Os_TE_121333 Chr8 27636884 27636885 - MPING 430 0.0003 (1/2992) 0 * Os_TE_121332 Os_TE_121332 Chr8 27636882 27636881 + MPING 430 0.0003 (1/2996) 0 * Os_TE_121333 Os_TE_121331 Chr8 27636772 27636773 + STOWAWAY51_OS 246 0.0003 (1/2983) 0 * * Os_TE_121316 Chr8 27632052 27631689 - ORSgTEMT00600524 364 0.3817 (1140/2987) 1 Intact Os_TE_121314 Os_TE_121314 Chr8 27631689 27632049 + ORSgTEMT00600272 361 0.3804 (1136/2986) 1 Intact Os_TE_121316 Os_TE_121313 Chr8 27631654 27631655 + STOWAWAY9_OS 235 0.0007 (2/2988) 0 * Os_TE_121312 Os_TE_121312 Chr8 27631653 27631652 - STOWAWAY9_OS 235 0.0011 (3/2852) 0 * Os_TE_121313 Os_TE_121311 Chr8 27630347 27630348 - COPIA2-LTR_OS 6433 0.0007 (2/2997) 0 * Os_TE_121310 Os_TE_121310 Chr8 27630343 27630342 + COPIA2-LTR_OS 6433 0.0007 (2/2998) 0 * Os_TE_121311 Os_TE_121251 Chr8 27601888 27601654 + ORSgTETNOOT00908 242 0.3514 (1044/2971) 1 Intact Os_TE_121250 Os_TE_121250 Chr8 27601654 27601884 + ORSgTETNOOT01219 231 0.3568 (1059/2968) 1 Intact Os_TE_121251 Os_TE_121240 Chr8 27597941 27597942 + RETRO2A_LTR 12895 0.0067 (19/2841) 0 * Os_TE_121239 Os_TE_121239 Chr8 27597937 27597936 - RETRO1_LTR 8314 0.0064 (18/2812) 0 * Os_TE_121240 Os_TE_121230 Chr8 27585579 27585580 + COPI2_LTR 4733 0.0003 (1/2991) 0 * Os_TE_121229 Os_TE_121229 Chr8 27585575 27585574 - COPI2_LTR 4733 0.0003 (1/2990) 0 * Os_TE_121230 Os_TE_121228 Chr8 27585199 27585198 - ORSgTEMT01602404 253 0.0904 (269/2975) 0 * Os_TE_121227 Os_TE_121227 Chr8 27585196 27585197 - ORSgTEMT01601432 239 0.0912 (271/2972) 0 * Os_TE_121228 Os_TE_121208 Chr8 27580118 27580117 + COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * * Os_TE_121202 Chr8 27578143 27578142 + GYPSY-A_LTR 8951 0.0108 (17/1579) 0 * * Os_TE_121177 Chr8 27568815 27568816 - MERMITE18B 1306 0.0010 (3/2976) 0 * * Os_TE_121168 Chr8 27561925 27561926 - COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_121167 Os_TE_121167 Chr8 27561921 27561920 + COPI2_LTR 4733 0.0003 (1/2997) 0 * Os_TE_121168 Os_TE_121151 Chr8 27554195 27554196 - INDITTO 263 0.0003 (1/2994) 0 * Os_TE_121150 Os_TE_121150 Chr8 27554193 27554192 + INDITTO 263 0.0003 (1/2992) 0 * Os_TE_121151 Os_TE_121116 Chr8 27545342 27545343 + ORSgTEMT00600160 361 0.0003 (1/2961) 0 * * Os_TE_121093 Chr8 27540012 27540013 - RIREX_LTR 8828 0.0003 (1/2978) 0 * Os_TE_121092 Os_TE_121092 Chr8 27540008 27540007 + RIREX_LTR 8828 0.0003 (1/2974) 0 * Os_TE_121093 Os_TE_121080 Chr8 27535476 27535477 - SC-3_LTR 5748 0.0010 (3/2991) 0 * Os_TE_121079 Os_TE_121079 Chr8 27535472 27535471 + ORSiTERTOOT00296 5553 0.0010 (3/2994) 0 * Os_TE_121080 Os_TE_121055 Chr8 27530133 27523719 - ORSgTERT00100363 6446 0.3288 (985/2996) 1 Intact Os_TE_121052 Os_TE_121052 Chr8 27523719 27530139 - COPIA2-LTR_OS 6433 0.3309 (991/2995) 1 Intact Os_TE_121055 Os_TE_121035 Chr8 27518869 27518870 + SZ-55_LTR 10318 0.0003 (1/2934) 0 * Os_TE_121034 Os_TE_121034 Chr8 27518865 27518864 - SZ-55_LTR 10318 0.0003 (1/2929) 0 * Os_TE_121035 Os_TE_121033 Chr8 27518025 27518026 + ORSgTETNOOT00908 242 0.6806 (2035/2990) 0 * Os_TE_121032 Os_TE_121032 Chr8 27518018 27518017 + ORSgTETNOOT01219 231 0.6771 (2015/2976) 0 * Os_TE_121033 Os_TE_121031 Chr8 27517991 27517990 + ORSgTETNOOT00908 242 0.0004 (1/2766) 0 * * Os_TE_121024 Chr8 27516970 27516969 + ORSgTEMT00901844 250 0.0010 (3/2998) 0 * Os_TE_121023 Os_TE_121023 Chr8 27516969 27516970 - ORSgTEMT00900099 250 0.0010 (3/2995) 0 * Os_TE_121024 Os_TE_121020 Chr8 27514703 27514702 + ORSgTEMT01601591 242 0.0030 (9/2994) 0 * Os_TE_121019 Os_TE_121019 Chr8 27514700 27514701 + ORSgTEMT01601591 242 0.0030 (9/2995) 0 * Os_TE_121020 Os_TE_121008 Chr8 27509938 27509937 - STOWAWAY51_OS 246 0.0087 (26/2977) 0 * Os_TE_121007 Os_TE_121007 Chr8 27509932 27509933 + STOWAWAY51_OS 246 0.0091 (27/2969) 0 * Os_TE_121008 Os_TE_120999 Chr8 27508399 27508400 + COPIA2-LTR_OS 6433 0.0003 (1/2968) 0 * Os_TE_120998 Os_TE_120998 Chr8 27508395 27508394 - COPIA2-LTR_OS 6433 0.0010 (3/2965) 0 * Os_TE_120999 Os_TE_120971 Chr8 27496615 27495519 + ORSgTERTOOT00009 12852 0.3053 (911/2984) 1 Intact Os_TE_120969 Os_TE_120969 Chr8 27495519 27496615 - RETRO2_LTR 12874 0.3080 (920/2987) 1 Solo_LTR Os_TE_120971 Os_TE_120966 Chr8 27494669 27494668 + F569 228 0.0609 (182/2989) 0 * * Os_TE_120957 Chr8 27485257 27485256 - ORSgTEMT01800105 452 0.0007 (2/2958) 0 * Os_TE_120956 Os_TE_120956 Chr8 27485253 27485254 - ORSgTEMT01800052 396 0.0010 (3/2956) 0 * Os_TE_120957 Os_TE_120949 Chr8 27484823 27484824 + RETRO2A_LTR 12895 0.0104 (31/2982) 0 * Os_TE_120948 Os_TE_120948 Chr8 27484819 27484818 - RETRO1_LTR 8314 0.0101 (30/2976) 0 * Os_TE_120949 Os_TE_120942 Chr8 27483216 27483217 - AMYLTP 383 0.3355 (869/2590) 0 * Os_TE_120941 Os_TE_120941 Chr8 27483208 27483207 + AMYLTP 383 0.2918 (724/2481) 0 * Os_TE_120942 Os_TE_120915 Chr8 27479077 27479078 + COPI2_LTR 4733 0.0003 (1/2990) 0 * Os_TE_120914 Os_TE_120914 Chr8 27479073 27479072 - COPI2_LTR 4733 0.0003 (1/2981) 0 * Os_TE_120915 Os_TE_120908 Chr8 27477200 27477201 - SZ-40LTR 2465 0.0228 (68/2977) 0 * Os_TE_120907 Os_TE_120907 Chr8 27477196 27477195 + SZ-40LTR 2465 0.0222 (66/2976) 0 * Os_TE_120908 Os_TE_120906 Chr8 27476811 27476810 - ORSgTEMT01601432 239 0.0020 (6/2997) 0 * * Os_TE_120887 Chr8 27470889 27470890 - INDITTO 263 0.0084 (25/2979) 0 * Os_TE_120886 Os_TE_120886 Chr8 27470887 27470886 + INDITTO 263 0.0081 (24/2965) 0 * Os_TE_120887 Os_TE_120864 Chr8 27467001 27467002 - ORSgTEMT01601493 303 0.5852 (1742/2977) 0 * Os_TE_120863 Os_TE_120863 Chr8 27467000 27466999 - ORSgTEMT01601493 303 0.5866 (1747/2978) 0 * Os_TE_120864 Os_TE_120849 Chr8 27464454 27464455 - ORSgTETNOOT01337 247 0.3679 (1088/2957) 0 * Os_TE_120848 Os_TE_120848 Chr8 27464452 27464451 - INDITTO 263 0.3641 (1070/2939) 0 * Os_TE_120849 Os_TE_120838 Chr8 27462997 27462996 + ORSgTEMT01600486 232 0.0010 (3/2932) 0 * * Os_TE_120829 Chr8 27461962 27461963 + ORSgTETNOOT01286 235 0.0010 (3/2993) 0 * Os_TE_120828 Os_TE_120828 Chr8 27461960 27461959 - ORSgTETNOOT01413 258 0.0010 (3/2993) 0 * Os_TE_120829 Os_TE_120823 Chr8 27460404 27460405 + TWIFBIG 3567 0.4607 (961/2086) 0 * * Os_TE_120821 Chr8 27460356 27460357 - MPING 430 0.0021 (4/1891) 0 * * Os_TE_120815 Chr8 27455357 27455358 - RIREX_LTR 8828 0.0003 (1/2988) 0 * Os_TE_120814 Os_TE_120814 Chr8 27455353 27455352 + RIREX_LTR 8828 0.0003 (1/2989) 0 * Os_TE_120815 Os_TE_120813 Chr8 27454331 27454332 + ORSgTERT00200063 5773 0.0004 (1/2822) 0 * * Os_TE_120795 Chr8 27452731 27452732 - OLO24 345 0.0010 (3/2993) 0 * Os_TE_120794 Os_TE_120794 Chr8 27452729 27452728 + OLO24 345 0.0010 (3/2990) 0 * Os_TE_120795 Os_TE_120791 Chr8 27452045 27452046 - COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_120790 Os_TE_120790 Chr8 27452041 27452040 + COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * Os_TE_120791 Os_TE_120782 Chr8 27451367 27451366 + NDNA1TNA_OS 334 0.0100 (30/2991) 0 * Os_TE_120781 Os_TE_120781 Chr8 27451366 27451367 + ORSgTEMT00100272 356 0.0100 (30/2988) 0 * Os_TE_120782 Os_TE_120779 Chr8 27450834 27450835 - MPING 430 0.0003 (1/2998) 0 * Os_TE_120778 Os_TE_120778 Chr8 27450832 27450831 + MPING 430 0.0003 (1/2998) 0 * Os_TE_120779 Os_TE_120767 Chr8 27449305 27449306 - MDR2 6967 0.2912 (671/2304) 0 * Os_TE_120766 Os_TE_120766 Chr8 27449297 27449296 + MDR2 6967 0.4234 (1178/2782) 0 * Os_TE_120767 Os_TE_120750 Chr8 27446906 27446907 + COPIA2-LTR_OS 6433 0.0003 (1/2974) 0 * Os_TE_120749 Os_TE_120749 Chr8 27446902 27446901 - COPIA2-LTR_OS 6433 0.0003 (1/2974) 0 * Os_TE_120750 Os_TE_120661 Chr8 27417405 27417404 - ORSgTEMT01602539 240 0.0011 (3/2755) 0 * Os_TE_120660 Os_TE_120660 Chr8 27417402 27417403 - ORSgTEMT01601432 239 0.0007 (2/2765) 0 * Os_TE_120661 Os_TE_120654 Chr8 27416813 27416812 - ORSgTEMT01601955 198 0.0010 (3/2984) 0 * * Os_TE_120652 Chr8 27416545 27416546 - ORSgTETNOOT00118 134 0.0010 (3/2996) 0 * Os_TE_120651 Os_TE_120651 Chr8 27416543 27416542 + ORSgTETNOOT01930 140 0.0010 (3/2996) 0 * Os_TE_120652 Os_TE_120633 Chr8 27406751 27406752 - ORSiTETNOOT00216 3569 0.0007 (2/2972) 0 * * Os_TE_120625 Chr8 27403621 27403622 + ORSgTETNOOT00032 218 0.0010 (3/2988) 0 * * Os_TE_120621 Chr8 27403141 27403140 - ORSgTETNOOT01607 258 0.0010 (3/2953) 0 * * Os_TE_120580 Chr8 27388741 27388742 + OSTE33 1012 0.0303 (90/2974) 0 * Os_TE_120579 Os_TE_120579 Chr8 27388732 27388731 + OSTE33 1012 0.0263 (78/2961) 0 * Os_TE_120580 Os_TE_120564 Chr8 27386150 27386149 - MERMITE18B 1306 0.0005 (1/2006) 0 * * Os_TE_120559 Chr8 27385315 27385316 + EXPLORER 210 0.0007 (2/2904) 0 * * Os_TE_120537 Chr8 27381688 27381687 - ORSgTEMT02400179 221 0.0010 (3/2962) 0 * * Os_TE_120534 Chr8 27381093 27381094 + ORSgTEMT00101674 340 0.0364 (108/2970) 0 * * Os_TE_120513 Chr8 27367846 27367847 + SC-8_LTR 4951 0.0007 (2/2993) 0 * Os_TE_120512 Os_TE_120512 Chr8 27367842 27367841 - SC-8_LTR 4951 0.0007 (2/2997) 0 * Os_TE_120513 Os_TE_120508 Chr8 27362440 27362441 - COPI2_LTR 4733 0.0003 (1/2997) 0 * Os_TE_120507 Os_TE_120507 Chr8 27362436 27362435 + COPI2_LTR 4733 0.0003 (1/2999) 0 * Os_TE_120508 Os_TE_120505 Chr8 27361621 27361622 + COPI2_LTR 4733 0.0013 (4/2995) 0 * Os_TE_120504 Os_TE_120504 Chr8 27361617 27361616 - COPI2_LTR 4733 0.0017 (5/2995) 0 * Os_TE_120505 Os_TE_120489 Chr8 27353710 27353711 + OLO24 345 0.0010 (3/2953) 0 * Os_TE_120488 Os_TE_120488 Chr8 27353708 27353707 - OLO24 345 0.0010 (3/2933) 0 * Os_TE_120489 Os_TE_120475 Chr8 27350100 27350099 + ORSgTETNOOT01930 140 0.0007 (2/2989) 0 * Os_TE_120474 Os_TE_120474 Chr8 27350099 27350100 - ORSgTEMT00501356 145 0.0010 (3/2990) 0 * Os_TE_120475 Os_TE_120430 Chr8 27339563 27339564 + RPO_OS 1983 0.0713 (82/1150) 0 * * Os_TE_120407 Chr8 27333723 27333724 - ORSgTEMT01602413 239 0.0298 (89/2989) 0 * * Os_TE_120405 Chr8 27333348 27333349 - RIRE2_LTR 11306 0.0254 (76/2997) 0 * Os_TE_120404 Os_TE_120404 Chr8 27333344 27333343 + RIRE2_LTR 11306 0.0257 (77/2997) 0 * Os_TE_120405 Os_TE_120403 Chr8 27333228 27333229 + ORSgTEMT01602181 239 0.0007 (2/2998) 0 * Os_TE_120402 Os_TE_120402 Chr8 27333227 27333226 - ORSgTEMT01601768 238 0.0007 (2/2998) 0 * Os_TE_120403 Os_TE_120395 Chr8 27330263 27330264 - F770 284 0.0499 (149/2986) 0 * * Os_TE_120388 Chr8 27327491 27327492 - COPI2_LTR 4733 0.0008 (2/2643) 0 * * Os_TE_120387 Chr8 27327379 27327380 + COPI2_LTR 4733 0.1552 (452/2913) 0 * Os_TE_120386 Os_TE_120386 Chr8 27327375 27327374 - COPI2_LTR 4733 0.0606 (160/2640) 0 * Os_TE_120387 Os_TE_120383 Chr8 27326787 27327025 + ORSgTEMT01601934 207 0.3520 (1012/2875) 1 Intact * Os_TE_120382 Chr8 27326638 27326639 + GYPSY-B_LTR 7068 0.0313 (93/2972) 0 * Os_TE_120381 Os_TE_120381 Chr8 27326634 27326633 - GYPSY1-LTR_OS 8900 0.0312 (93/2977) 0 * Os_TE_120382 Os_TE_120379 Chr8 27326562 27326563 - ORSgTEMT00600570 360 0.0285 (85/2987) 0 * * Os_TE_120374 Chr8 27323392 27323393 - RIRE2_LTR 11306 0.0010 (3/2916) 0 * * Os_TE_120369 Chr8 27322449 27322450 - RETROSAT3_LTR 11537 0.0344 (82/2386) 0 * * Os_TE_120367 Chr8 27322138 27322139 - INDITTO 263 0.0310 (91/2940) 0 * Os_TE_120366 Os_TE_120366 Chr8 27322136 27322135 + INDITTO 263 0.0296 (87/2942) 0 * Os_TE_120367 Os_TE_120348 Chr8 27312497 27312498 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_120347 Os_TE_120347 Chr8 27312493 27312492 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_120348 Os_TE_120341 Chr8 27309489 27309490 - MPING 430 0.0003 (1/2992) 0 * Os_TE_120340 Os_TE_120340 Chr8 27309487 27309486 + MPING 430 0.0003 (1/2993) 0 * Os_TE_120341 Os_TE_120313 Chr8 27296165 27296164 + MPING 430 0.0003 (1/2992) 0 * * Os_TE_120311 Chr8 27295670 27295671 - ORSgTEMT00900741 219 0.0020 (6/2977) 0 * * Os_TE_120301 Chr8 27295094 27295095 - RIREX_LTR 8828 0.0007 (2/2989) 0 * Os_TE_120300 Os_TE_120300 Chr8 27295090 27295089 + RIREX_LTR 8828 0.0007 (2/2985) 0 * Os_TE_120301 Os_TE_120267 Chr8 27287496 27287497 + SC-8_LTR 4951 0.0020 (6/2939) 0 * Os_TE_120266 Os_TE_120266 Chr8 27287492 27287491 - SC-8_LTR 4951 0.0020 (6/2935) 0 * Os_TE_120267 Os_TE_120264 Chr8 27285260 27285261 - SC-3_LTR 5748 0.0003 (1/2968) 0 * Os_TE_120263 Os_TE_120263 Chr8 27285256 27285255 + ORSiTERTOOT00296 5553 0.0003 (1/2967) 0 * Os_TE_120264 Os_TE_120247 Chr8 27263934 27263935 - STOWAWAY43_OS 233 0.0010 (3/2952) 0 * * Os_TE_120246 Chr8 27263521 27263520 + ORSgTEMT01700637 157 0.0010 (3/2986) 0 * * Os_TE_120245 Chr8 27263271 27263270 - ORSgTEMT01400038 210 0.0303 (89/2935) 0 * * Os_TE_120231 Chr8 27260948 27260947 + ORSgTEMT01700513 151 0.0323 (96/2969) 0 * Os_TE_120230 Os_TE_120230 Chr8 27260945 27260946 - ORSgTEMT01700216 124 0.0322 (95/2953) 0 * Os_TE_120231 Os_TE_120228 Chr8 27260033 27255237 - RETROFIT5_LTR 4785 0.3322 (988/2974) 1 Intact * Os_TE_120204 Chr8 27251955 27251954 - RETRO1_LTR 8314 0.0003 (1/2893) 0 * * Os_TE_120199 Chr8 27249789 27249788 - MuDR2_OS 6770 0.0244 (70/2866) 0 * * Os_TE_120198 Chr8 27249501 27249502 + ORSgTEMT01700637 157 0.0319 (95/2978) 0 * * Os_TE_120196 Chr8 27246943 27246942 + ORSgTEMT00501222 152 0.4635 (820/1769) 0 * * Os_TE_120184 Chr8 27241649 27241648 + STOWAWAY17_OS 259 0.0307 (92/2994) 0 * * Os_TE_120178 Chr8 27236943 27236944 - INDITTO 263 0.0004 (1/2607) 0 * * Os_TE_120176 Chr8 27236902 27236646 - ORSgTETNOOT00303 256 0.3256 (957/2939) 1 Intact Os_TE_120174 Os_TE_120174 Chr8 27236645 27236908 + INDITTO 263 0.3295 (962/2920) 1 Intact Os_TE_120176 Os_TE_120164 Chr8 27235100 27235101 - NDNA1TNA_OS 334 0.0003 (1/2924) 0 * * Os_TE_120162 Chr8 27234874 27234875 + ORSgTETNOOT01930 140 0.0011 (3/2740) 0 * Os_TE_120161 Os_TE_120161 Chr8 27234872 27234871 - ORSgTETNOOT00323 125 0.0011 (3/2705) 0 * Os_TE_120162 Os_TE_120160 Chr8 27234639 27234640 + OLO24 345 0.0322 (87/2699) 0 * Os_TE_120159 Os_TE_120159 Chr8 27234637 27234636 - OLO24 345 0.0334 (91/2725) 0 * Os_TE_120160 Os_TE_120153 Chr8 27233446 27233447 - ORSgTEMT01702320 154 0.0004 (1/2807) 0 * * Os_TE_120150 Chr8 27232849 27232848 + ORSgTEMT00101341 314 0.0231 (69/2982) 0 * * Os_TE_120147 Chr8 27232609 27232610 - ORSgTETNOOT01413 258 0.0305 (91/2987) 0 * * Os_TE_120142 Chr8 27229953 27229954 + MERMITEA 1710 0.0304 (90/2962) 0 * Os_TE_120141 Os_TE_120141 Chr8 27229945 27229944 + MERMITEA 1710 0.0280 (83/2960) 0 * Os_TE_120142 Os_TE_120129 Chr8 27226891 27226890 - ORSgTEMT01400006 213 0.0010 (3/2966) 0 * * Os_TE_120122 Chr8 27226377 27226378 - NDNA1TNA_OS 334 0.0020 (6/2933) 0 * Os_TE_120121 Os_TE_120121 Chr8 27226375 27226374 + NDNA1TNA_OS 334 0.0021 (6/2902) 0 * Os_TE_120122 Os_TE_120119 Chr8 27226108 27226109 - AMYLTP 383 0.0122 (36/2949) 0 * Os_TE_120118 Os_TE_120118 Chr8 27226100 27226099 + AMYLTP 383 0.0125 (37/2962) 0 * Os_TE_120119 Os_TE_120113 Chr8 27225631 27225630 - TELIA 141 0.0010 (3/2966) 0 * * Os_TE_120089 Chr8 27220434 27220435 + ORSgTERTOOT00009 12852 0.0003 (1/2947) 0 * Os_TE_120088 Os_TE_120088 Chr8 27220430 27220429 - RETRO2_LTR 12874 0.0003 (1/2938) 0 * Os_TE_120089 Os_TE_120079 Chr8 27219213 27219214 + ORSiCMCM00100019 2717 0.0208 (60/2887) 0 * Os_TE_120078 Os_TE_120078 Chr8 27219209 27219208 - TRUNCATOR2_LTR 2904 0.0218 (63/2886) 0 * Os_TE_120079 Os_TE_120076 Chr8 27218805 27218929 - OSTE18 129 0.8876 (2574/2900) 1 Intact * Os_TE_120072 Chr8 27218287 27218288 + HARB-1_OS 5166 0.0003 (1/2988) 0 * Os_TE_120071 Os_TE_120071 Chr8 27218285 27218284 - HARB-1_OS 5166 0.0003 (1/2989) 0 * Os_TE_120072 Os_TE_120061 Chr8 27213539 27213540 - QIQI 323 0.0007 (2/2995) 0 * Os_TE_120060 Os_TE_120060 Chr8 27213537 27213536 + QIQI 323 0.0007 (2/2995) 0 * Os_TE_120061 Os_TE_120048 Chr8 27207186 27207187 + SC-8_LTR 4951 0.0003 (1/2997) 0 * Os_TE_120047 Os_TE_120047 Chr8 27207182 27207181 - SC-8_LTR 4951 0.0003 (1/2997) 0 * Os_TE_120048 Os_TE_120046 Chr8 27206320 27206319 + ORSgTEMT01601591 242 0.0007 (2/2984) 0 * * Os_TE_120045 Chr8 27206317 27206318 + ORSgTEMT01601591 242 0.0007 (2/2985) 0 * * Os_TE_120044 Chr8 27206306 27206305 - ORSgTEMT00300141 415 0.0288 (86/2982) 0 * * Os_TE_120040 Chr8 27205374 27205373 - SZ-35LTR 3853 0.2943 (864/2936) 0 * * Os_TE_120016 Chr8 27197185 27197184 - COPI2_LTR 4733 0.0003 (1/2946) 0 * * Os_TE_120015 Chr8 27193814 27193815 - ORSgTETNOOT00118 134 0.0307 (92/2992) 0 * Os_TE_120014 Os_TE_120014 Chr8 27193812 27193811 + ORSgTETNOOT01930 140 0.0298 (89/2986) 0 * Os_TE_120015 Os_TE_120001 Chr8 27192574 27192575 + ENSPM4_OS 11610 0.0003 (1/2952) 0 * * Os_TE_120000 Chr8 27192545 27192544 + ORSgTEMT01602181 239 0.0287 (85/2958) 0 * Os_TE_119999 Os_TE_119999 Chr8 27192542 27192543 + ORSgTEMT01602181 239 0.0296 (88/2978) 0 * Os_TE_120000 Os_TE_119986 Chr8 27190084 27190085 + DEBOAT 110 0.0007 (2/2994) 0 * * Os_TE_119985 Chr8 27188802 27188803 - ORSgTEMT01700216 124 0.0035 (10/2896) 0 * * Os_TE_119984 Chr8 27188669 27188668 - ORSgTEMT01400010 213 0.0007 (2/2893) 0 * * Os_TE_119982 Chr8 27187958 27187959 + SZ-55_LTR 10318 0.0003 (1/2897) 0 * * Os_TE_119972 Chr8 27182157 27182156 + ORSiTERTOOT00296 5553 0.0003 (1/2911) 0 * * Os_TE_119962 Chr8 27180271 27180272 + COPIA2-LTR_OS 6433 0.0271 (80/2953) 0 * * Os_TE_119961 Chr8 27179540 27179541 - INDITTO 263 0.0007 (2/2911) 0 * * Os_TE_119959 Chr8 27179492 27179493 + ORSgTETNOOT01219 231 0.1544 (448/2901) 0 * Os_TE_119958 Os_TE_119958 Chr8 27179485 27179484 + ORSgTETNOOT00908 242 0.1562 (458/2933) 0 * Os_TE_119959 Os_TE_119953 Chr8 27178836 27178835 + TOS17LTR 138 0.0003 (1/2996) 0 * * Os_TE_119949 Chr8 27175718 27175719 + ORSiTERTOOT00402 2660 0.0336 (98/2913) 0 * * Os_TE_119946 Chr8 27175181 27175182 - RIREX_LTR 8828 0.0010 (3/2915) 0 * Os_TE_119945 Os_TE_119945 Chr8 27175177 27175176 + RIREX_LTR 8828 0.0007 (2/2915) 0 * Os_TE_119946 Os_TE_119944 Chr8 27174702 27174703 - COPI2_LTR 4733 0.0003 (1/2924) 0 * * Os_TE_119942 Chr8 27173737 27173738 - COPI2_LTR 4733 0.0003 (1/2889) 0 * Os_TE_119941 Os_TE_119941 Chr8 27173733 27173732 + COPI2_LTR 4733 0.0003 (1/2882) 0 * Os_TE_119942 Os_TE_119936 Chr8 27171237 27171238 + SC-8_LTR 4951 0.0004 (1/2316) 0 * Os_TE_119935 Os_TE_119935 Chr8 27171233 27171232 - SC-8_LTR 4951 0.0003 (1/2911) 0 * Os_TE_119936 Os_TE_119914 Chr8 27162319 27162318 - TYPEM 227 0.0003 (1/2908) 0 * Os_TE_119913 Os_TE_119913 Chr8 27162318 27162319 - ORSgTEMT02400246 177 0.0003 (1/2904) 0 * Os_TE_119914 Os_TE_119912 Chr8 27162131 27162132 - COPIA2-LTR_OS 6433 0.0337 (98/2912) 0 * Os_TE_119911 Os_TE_119911 Chr8 27162127 27162126 + COPIA2-LTR_OS 6433 0.0330 (96/2911) 0 * Os_TE_119912 Os_TE_119910 Chr8 27162114 27162115 - TESSBIG 4057 0.0010 (3/2928) 0 * Os_TE_119909 Os_TE_119909 Chr8 27162107 27162106 + TESSBIG 4057 0.0010 (3/2893) 0 * Os_TE_119910 Os_TE_119899 Chr8 27161225 27161226 - ORSgTEMT01601934 207 0.0298 (88/2949) 0 * * Os_TE_119895 Chr8 27157975 27157974 + ORSgTEMT00101674 340 0.0284 (85/2995) 0 * * Os_TE_119887 Chr8 27152814 27152815 + ORSgTETNOOT00908 242 0.0003 (1/2943) 0 * * Os_TE_119886 Chr8 27152477 27152215 - ORSgTETNOOT00053 263 0.3965 (1036/2613) 1 Intact * Os_TE_119878 Chr8 27151601 27151600 - RETRO2A_LTR 12895 0.0644 (188/2921) 0 * * Os_TE_119877 Chr8 27151149 27151150 - ORSiTEMT01300001 950 0.0335 (100/2988) 0 * * Os_TE_119874 Chr8 27150850 27150851 + ORSgTETNOOT01930 140 0.0296 (88/2977) 0 * Os_TE_119873 Os_TE_119873 Chr8 27150845 27150844 + ORSgTEMT00501504 140 0.0299 (88/2948) 0 * Os_TE_119874 Os_TE_119869 Chr8 27149285 27149284 - NDNA1TNA_OS 334 0.0228 (68/2982) 0 * * Os_TE_119862 Chr8 27148511 27148510 + ORSgTEMT02000020 195 0.2236 (660/2952) 0 * * Os_TE_119841 Chr8 27136539 27142019 + HELITRON2_OS 15167 0.7377 (2197/2978) 1 Intact * Os_TE_119840 Chr8 27135347 27135348 - RIREX_LTR 8828 0.0037 (11/2976) 0 * Os_TE_119839 Os_TE_119839 Chr8 27135343 27135342 + RIREX_LTR 8828 0.0030 (9/2981) 0 * Os_TE_119840 Os_TE_119838 Chr8 27135075 27135076 + TWIF 586 0.0003 (1/2998) 0 * Os_TE_119837 Os_TE_119837 Chr8 27135068 27135067 - ORSiTETNOOT00134 607 0.0003 (1/2998) 0 * Os_TE_119838 Os_TE_119834 Chr8 27134391 27134390 + ORSgTETNOOT01219 231 0.0160 (48/2993) 0 * * Os_TE_119831 Chr8 27131784 27131785 - ORSiTERTOOT00402 2660 0.0007 (2/2996) 0 * * Os_TE_119817 Chr8 27123875 27123876 + ORSiTERTOOT00333 4719 0.0003 (1/2996) 0 * Os_TE_119816 Os_TE_119816 Chr8 27123872 27123871 - ORSiTERTOOT00333 4719 0.0003 (1/2994) 0 * Os_TE_119817 Os_TE_119807 Chr8 27122265 27122264 - ORSiTERTOOT00402 2660 0.0003 (1/2994) 0 * * Os_TE_119780 Chr8 27114472 27114471 + SC-4_LTR 5218 0.0003 (1/2924) 0 * * Os_TE_119771 Chr8 27111816 27111817 + MPING 430 0.0326 (95/2914) 0 * Os_TE_119770 Os_TE_119770 Chr8 27111814 27111813 - MPING 430 0.0311 (93/2995) 0 * Os_TE_119771 Os_TE_119765 Chr8 27105785 27105786 - SC-3_LTR 5748 0.0003 (1/2990) 0 * Os_TE_119764 Os_TE_119764 Chr8 27105781 27105780 + ORSiTERTOOT00296 5553 0.0003 (1/2992) 0 * Os_TE_119765 Os_TE_119732 Chr8 27089157 27089158 + DS-RICE4N 715 0.0290 (86/2965) 0 * Os_TE_119730 Os_TE_119730 Chr8 27089143 27089142 + ORSiTETN00100011 676 0.0299 (89/2976) 0 * Os_TE_119732 Os_TE_119728 Chr8 27088487 27088488 - ORSiTERTOOT00023 5086 0.0321 (96/2987) 0 * Os_TE_119727 Os_TE_119727 Chr8 27088483 27088482 + SZ-54C_LTR 5249 0.0305 (91/2988) 0 * Os_TE_119728 Os_TE_119726 Chr8 27087453 27087454 - OSR42_LTR 5605 0.0297 (89/2993) 0 * Os_TE_119725 Os_TE_119725 Chr8 27087449 27087448 + OSR42_LTR 5605 0.0297 (89/2995) 0 * Os_TE_119726 Os_TE_119723 Chr8 27086399 27086400 - OSR3_LTR 5201 0.0003 (1/2997) 0 * Os_TE_119722 Os_TE_119722 Chr8 27086395 27086394 + OSR3_LTR 5201 0.0003 (1/2994) 0 * Os_TE_119723 Os_TE_119721 Chr8 27085256 27078787 + MuDR3_OS 8604 0.3027 (899/2970) 1 Intact Os_TE_119719 Os_TE_119719 Chr8 27078787 27085252 - MuDR3_OS 8604 0.2953 (869/2943) 1 Intact Os_TE_119721 Os_TE_119708 Chr8 27075009 27075010 - RETROSAT2LTR 12796 0.0628 (186/2964) 0 * * Os_TE_119704 Chr8 27073428 27073427 + ORSgTEMT00500201 140 0.0020 (6/2971) 0 * * Os_TE_119703 Chr8 27073427 27073428 + ORSgTETNOOT00906 136 0.0024 (7/2973) 0 * Os_TE_119702 Os_TE_119702 Chr8 27073419 27073418 - ORSgTEMT00502171 134 0.0017 (5/2974) 0 * Os_TE_119703 Os_TE_119697 Chr8 27070469 27070674 - OsSN3 183 0.5525 (1537/2782) 1 Intact * Os_TE_119691 Chr8 27067293 27067292 + INDITTO 263 0.0010 (3/2980) 0 * * Os_TE_119681 Chr8 27060551 27060552 + OSTE22 2037 0.4632 (1334/2880) 0 * * Os_TE_119680 Chr8 27060160 27060161 - RETROSAT2LTR 12796 0.0007 (2/2983) 0 * * Os_TE_119679 Chr8 27059656 27059655 + OLO24 345 0.2786 (816/2929) 0 * * Os_TE_119662 Chr8 27046857 27046513 - OLO24 345 0.8319 (2449/2944) 1 Intact Os_TE_119660 Os_TE_119660 Chr8 27046513 27046857 + OLO24 345 0.8277 (2412/2914) 1 Intact Os_TE_119662 Os_TE_119659 Chr8 27046464 27046465 - ORSgTEMT03800066 376 0.1823 (535/2935) 0 * Os_TE_119658 Os_TE_119658 Chr8 27046461 27046460 + BUHUI 375 0.1699 (492/2895) 0 * Os_TE_119659 Os_TE_119655 Chr8 27044525 27044526 - SZ-9LTR 965 0.2236 (659/2947) 0 * Os_TE_119654 Os_TE_119654 Chr8 27044521 27044520 + SZ-9LTR 965 0.2591 (629/2428) 0 * Os_TE_119655 Os_TE_119653 Chr8 27044299 27040514 + SZ-67LTR 1540 0.4209 (1247/2963) 1 Intact Os_TE_119647 Os_TE_119647 Chr8 27040513 27044299 - SZ-67LTR 1540 0.4313 (1290/2991) 1 Intact Os_TE_119653 Os_TE_119644 Chr8 27040180 27040179 - RETRO1_LTR 8314 0.0010 (3/2965) 0 * * Os_TE_119642 Chr8 27039949 27040121 - TNR9 176 0.8259 (2452/2969) 1 Intact * Os_TE_119632 Chr8 27032814 27032647 - COWARD 200 0.5850 (1408/2407) 1 Intact Os_TE_119629 Os_TE_119629 Chr8 27032647 27032807 - COWARD 200 0.5676 (1423/2507) 1 Intact Os_TE_119632 Os_TE_119627 Chr8 27032494 27032366 - ORSgTEMT00501165 134 0.4974 (1429/2873) 1 Intact * Os_TE_119625 Chr8 27032361 27032362 + ORSgTEMT01400039 200 0.4316 (1285/2977) 0 * * Os_TE_119622 Chr8 27031061 27030931 - ORSgTEMT00501237 133 0.4006 (1162/2901) 1 Intact * Os_TE_119619 Chr8 27030911 27030912 - OSTE19 162 0.4512 (1344/2979) 0 * * Os_TE_119617 Chr8 27028748 27028747 - ORSiTERTOOT00329 5144 0.0004 (1/2430) 0 * * Os_TE_119614 Chr8 27027512 27027358 + ORSgTETNOOT01930 140 0.7022 (1629/2320) 1 Intact * Os_TE_119610 Chr8 27027037 27027038 - ORSiTERTOOT00361 5627 0.0656 (142/2166) 0 * Os_TE_119609 Os_TE_119609 Chr8 27027033 27027032 + ORSiTERTOOT00361 5627 0.0521 (136/2609) 0 * Os_TE_119610 Os_TE_119603 Chr8 27019148 27019149 + MuDR2_OS 6770 0.0052 (12/2314) 0 * Os_TE_119602 Os_TE_119602 Chr8 27019139 27019138 - MuDR2_OS 6770 0.0056 (13/2313) 0 * Os_TE_119603 Os_TE_119590 Chr8 27015825 27014898 - ORSiTETNOOT00107 906 0.7557 (1420/1879) 1 Intact * Os_TE_119567 Chr8 27010711 27011061 - TYPEU 362 0.8476 (1957/2309) 1 Intact * Os_TE_119560 Chr8 27008277 27008276 - ORSgTEMT01602413 239 0.0203 (47/2310) 0 * * Os_TE_119559 Chr8 27008274 27008275 - ORSgTEMT01602413 239 0.0204 (47/2307) 0 * Os_TE_119558 Os_TE_119558 Chr8 27008271 27008270 + ORSgTEMT01600891 233 0.0204 (47/2305) 0 * Os_TE_119559 Os_TE_119552 Chr8 27007761 27008022 - STOWAWAY13_OS 251 0.6382 (1464/2294) 1 Intact * Os_TE_119538 Chr8 26998601 26998600 + TESS 244 0.0186 (49/2633) 0 * * Os_TE_119537 Chr8 26998074 26998073 + STOWAWAY9_OS 235 0.0808 (187/2313) 0 * * Os_TE_119521 Chr8 26991378 26991379 + ORSiCMCM00100019 2717 0.0003 (1/2971) 0 * Os_TE_119520 Os_TE_119520 Chr8 26991329 26991328 - TRUNCATOR2_LTR 2904 0.0003 (1/2967) 0 * Os_TE_119521 Os_TE_119512 Chr8 26986994 26986995 - DS-RICE4N 715 0.3204 (675/2107) 0 * Os_TE_119511 Os_TE_119511 Chr8 26986987 26986986 + DS-RICE4N 715 0.2258 (640/2834) 0 * Os_TE_119512 Os_TE_119509 Chr8 26986496 26986497 - TYPEG 427 0.0515 (154/2993) 0 * * Os_TE_119507 Chr8 26986058 26986057 - ORSgTEMT01400014 209 0.0419 (125/2986) 0 * Os_TE_119506 Os_TE_119506 Chr8 26986057 26986058 - STOWAWAY9_OS 235 0.0417 (124/2977) 0 * Os_TE_119507 Os_TE_119504 Chr8 26985866 26985865 + ORSiTERTOOT00402 2660 0.0305 (91/2986) 0 * * Os_TE_119503 Chr8 26985735 26985625 + TREP219 104 0.8344 (2403/2880) 1 Intact * Os_TE_119501 Chr8 26985645 26985644 + F770 284 0.0210 (30/1430) 0 * * Os_TE_119496 Chr8 26985281 26985280 - STOWAWAY1_OS 149 0.2107 (628/2981) 0 * Os_TE_119495 Os_TE_119495 Chr8 26985270 26985271 - ORSgTEMT01700216 124 0.2125 (635/2988) 0 * Os_TE_119496 Os_TE_119492 Chr8 26984842 26984841 - ORSgTEMT01701882 154 0.2131 (635/2980) 0 * * Os_TE_119490 Chr8 26984596 26984597 + STOWAWAY50_OS 174 0.2491 (638/2561) 0 * * Os_TE_119488 Chr8 26984166 26984167 - SZ-55_LTR 10318 0.0003 (1/2998) 0 * Os_TE_119487 Os_TE_119487 Chr8 26984162 26984161 + SZ-55_LTR 10318 0.0003 (1/2999) 0 * Os_TE_119488 Os_TE_119485 Chr8 26984078 26984079 - RETROSAT4_LTR 13504 0.0160 (48/2992) 0 * Os_TE_119484 Os_TE_119484 Chr8 26984074 26984073 + RETROSAT4_LTR 13504 0.0164 (49/2993) 0 * Os_TE_119485 Os_TE_119483 Chr8 26983073 26983074 - LINE-7_OS 7090 0.0437 (130/2978) 0 * * Os_TE_119482 Chr8 26982993 26982994 - SETARIA1 1293 0.2087 (593/2841) 0 * Os_TE_119481 Os_TE_119481 Chr8 26982987 26982986 + SETARIA2 1142 0.2054 (610/2970) 0 * Os_TE_119482 Os_TE_119480 Chr8 26982876 26982877 - LINE1-8_OS 7101 0.4544 (1360/2993) 0 * * Os_TE_119479 Chr8 26982577 26982578 - MERMITED 1572 0.0076 (22/2893) 0 * Os_TE_119478 Os_TE_119478 Chr8 26982575 26982574 - MERMITED 1572 0.0074 (22/2988) 0 * Os_TE_119479 Os_TE_119476 Chr8 26982384 26982385 - NDNA1TNA_OS 334 0.0082 (23/2819) 0 * Os_TE_119475 Os_TE_119475 Chr8 26982382 26982381 + NDNA1TNA_OS 334 0.0082 (23/2808) 0 * Os_TE_119476 Os_TE_119470 Chr8 26980654 26980653 - SNAP-OL3 189 0.0011 (3/2639) 0 * * Os_TE_119469 Chr8 26980637 26980636 + DS-RICE3N 525 0.0011 (3/2730) 0 * * Os_TE_119468 Chr8 26980509 26980510 + WUWU 113 0.5901 (1133/1920) 0 * Os_TE_119467 Os_TE_119467 Chr8 26980501 26980500 + WUWU 113 0.5915 (1138/1924) 0 * Os_TE_119468 Os_TE_119458 Chr8 26978447 26978448 - RIREX_LTR 8828 0.0010 (3/2989) 0 * * Os_TE_119456 Chr8 26977951 26977952 - TOS17LTR 138 0.0140 (42/2996) 0 * Os_TE_119455 Os_TE_119455 Chr8 26977947 26977946 + TOS17LTR 138 0.0155 (42/2716) 0 * Os_TE_119456 Os_TE_119452 Chr8 26971791 26971424 - ORSgTEMT04800063 360 0.6119 (1047/1711) 1 Intact Os_TE_119451 Os_TE_119451 Chr8 26971423 26971791 + ORSgTEMT04800085 366 0.6159 (1052/1708) 1 Intact Os_TE_119452 Os_TE_119422 Chr8 26954667 26954668 + ORSiTEMT03300001 145 0.0017 (5/2995) 0 * * Os_TE_119411 Chr8 26950792 26950791 + SEVERIN-2 1952 0.0067 (20/2989) 0 * * Os_TE_119402 Chr8 26947376 26947377 + RETROSAT4_LTR 13504 0.0007 (2/2956) 0 * Os_TE_119401 Os_TE_119401 Chr8 26947372 26947371 - RETROSAT4_LTR 13504 0.0007 (2/2932) 0 * Os_TE_119402 Os_TE_119400 Chr8 26946952 26946953 + TWIF 586 0.0315 (94/2987) 0 * Os_TE_119399 Os_TE_119399 Chr8 26946945 26946944 - ORSiTETNOOT00200 3563 0.0045 (13/2912) 0 * Os_TE_119400 Os_TE_119391 Chr8 26944606 26944607 + STOWAWAY51_OS 246 0.0003 (1/2991) 0 * * Os_TE_119390 Chr8 26943410 26943411 + COPIA2-LTR_OS 6433 0.0003 (1/2960) 0 * Os_TE_119389 Os_TE_119389 Chr8 26943406 26943405 - COPIA2-LTR_OS 6433 0.0003 (1/2962) 0 * Os_TE_119390 Os_TE_119387 Chr8 26942666 26942667 - TNR8-1 418 0.0003 (1/2979) 0 * * Os_TE_119385 Chr8 26941447 26941448 + TOS17LTR 138 0.0284 (85/2995) 0 * Os_TE_119384 Os_TE_119384 Chr8 26941443 26941442 - TOS17LTR 138 0.0291 (87/2994) 0 * Os_TE_119385 Os_TE_119372 Chr8 26929825 26929826 - SZ-54_LTR 5203 0.0003 (1/2998) 0 * Os_TE_119371 Os_TE_119371 Chr8 26929821 26929820 + SZ-54_LTR 5203 0.0003 (1/2994) 0 * Os_TE_119372 Os_TE_119364 Chr8 26928970 26928969 + ORSgTEMT01701663 106 0.0020 (6/2950) 0 * Os_TE_119363 Os_TE_119363 Chr8 26928969 26928970 + ORSgTEMT01701101 133 0.0020 (6/2955) 0 * Os_TE_119364 Os_TE_119359 Chr8 26927775 26927776 + ORSiTERTOOT00333 4719 0.0003 (1/2975) 0 * Os_TE_119358 Os_TE_119358 Chr8 26927772 26927771 - ORSiTERTOOT00333 4719 0.0003 (1/2982) 0 * Os_TE_119359 Os_TE_119353 Chr8 26922304 26922305 - TOS17LTR 138 0.0003 (1/2990) 0 * Os_TE_119352 Os_TE_119352 Chr8 26922300 26922299 + TOS17LTR 138 0.0003 (1/2989) 0 * Os_TE_119353 Os_TE_119350 Chr8 26921942 26921943 + OSTE15 1168 0.0341 (101/2962) 0 * * Os_TE_119336 Chr8 26915812 26915813 + ORSgTETN00200005 1121 0.0007 (2/2906) 0 * * Os_TE_119330 Chr8 26914636 26914635 - TELIA 141 0.0020 (6/2945) 0 * * Os_TE_119327 Chr8 26913486 26913487 - STOWAWAY1_OS 149 0.0020 (6/2994) 0 * * Os_TE_119323 Chr8 26908823 26908822 - ORSgTEMT00500471 125 0.0740 (221/2986) 0 * * Os_TE_119322 Chr8 26908762 26908761 + NDNA2TNA_OS 346 0.0010 (3/2993) 0 * Os_TE_119321 Os_TE_119321 Chr8 26908759 26908760 - NDNA2TNA_OS 346 0.0010 (3/2994) 0 * Os_TE_119322 Os_TE_119319 Chr8 26908193 26908194 - COWARD 200 0.0014 (4/2962) 0 * * Os_TE_119303 Chr8 26906959 26906960 + SNAP-OL3 189 0.0743 (222/2987) 0 * * Os_TE_119301 Chr8 26906077 26906076 + CPSC2_LTR 5202 0.0125 (37/2968) 0 * * Os_TE_119292 Chr8 26902195 26902196 - COPI2_LTR 4733 0.0886 (264/2979) 0 * * Os_TE_119288 Chr8 26900020 26900021 + ORSgTEMT02400041 225 0.0003 (1/2984) 0 * * Os_TE_119283 Chr8 26897986 26897987 - NDNA1TNA_OS 334 0.0007 (2/2911) 0 * * Os_TE_119279 Chr8 26896842 26896843 - NDNA1TNA_OS 334 0.0126 (37/2946) 0 * * Os_TE_119272 Chr8 26896013 26896014 + SZ-55_LTR 10318 0.0960 (287/2990) 0 * Os_TE_119271 Os_TE_119271 Chr8 26896009 26896008 - SZ-55_LTR 10318 0.0909 (271/2982) 0 * Os_TE_119272 Os_TE_119261 Chr8 26894306 26894305 - ORSgTEMT01601432 239 0.0003 (1/2997) 0 * Os_TE_119260 Os_TE_119260 Chr8 26894303 26894304 + ORSgTEMT01602181 239 0.0003 (1/2996) 0 * Os_TE_119261 Os_TE_119259 Chr8 26894146 26894145 + ORSgTEMT01602051 240 0.0020 (6/2991) 0 * Os_TE_119258 Os_TE_119258 Chr8 26894143 26894144 + ORSgTEMT01600662 238 0.0017 (5/2992) 0 * Os_TE_119259 Os_TE_119256 Chr8 26893266 26893265 + NDNA1TNA_OS 334 0.0328 (98/2990) 0 * Os_TE_119255 Os_TE_119255 Chr8 26893264 26893265 + ORSgTEMT00100531 325 0.0321 (96/2988) 0 * Os_TE_119256 Os_TE_119250 Chr8 26889688 26889687 - ORSiTERTOOT00035 413 0.0007 (2/2991) 0 * * Os_TE_119246 Chr8 26886508 26886509 - TNR2A 152 0.0020 (6/2997) 0 * Os_TE_119245 Os_TE_119245 Chr8 26886492 26886491 + TNR2A 152 0.0013 (4/2998) 0 * Os_TE_119246 Os_TE_119243 Chr8 26884337 26884338 + MUDRN1_OS 764 0.0007 (2/2985) 0 * Os_TE_119242 Os_TE_119242 Chr8 26884329 26884328 - MUDRN1_OS 764 0.0010 (3/2985) 0 * Os_TE_119243 Os_TE_119227 Chr8 26880783 26880784 - RIRE2_LTR 11306 0.0137 (41/2990) 0 * Os_TE_119226 Os_TE_119226 Chr8 26880779 26880778 - ORSgTERT00201216 11284 0.0131 (39/2981) 0 * Os_TE_119227 Os_TE_119219 Chr8 26879484 26879485 + F804 170 0.7925 (2204/2781) 0 * * Os_TE_119217 Chr8 26878535 26878536 - ATLANTYS-LTR_OS 13740 0.0003 (1/2990) 0 * * Os_TE_119213 Chr8 26873489 26873488 + ORSiOTOT00000037 220 0.0043 (13/2994) 0 * * Os_TE_119198 Chr8 26868866 26868867 - SZ-55_LTR 10318 0.0003 (1/2867) 0 * Os_TE_119197 Os_TE_119197 Chr8 26868862 26868861 + SZ-55_LTR 10318 0.0003 (1/2860) 0 * Os_TE_119198 Os_TE_119185 Chr8 26866921 26866920 - ORSgTEMT00900417 246 0.2039 (582/2855) 0 * Os_TE_119184 Os_TE_119184 Chr8 26866920 26866921 - ORSgTEMT00900034 246 0.1970 (579/2939) 0 * Os_TE_119185 Os_TE_119183 Chr8 26866728 26866729 + SPMLIKE 10989 0.0004 (1/2353) 0 * Os_TE_119182 Os_TE_119182 Chr8 26866726 26866725 - SPMLIKE 10989 0.0004 (1/2340) 0 * Os_TE_119183 Os_TE_119181 Chr8 26866717 26866718 - ORSgTEMT01602170 250 0.0444 (109/2454) 0 * * Os_TE_119178 Chr8 26865571 26865572 + WUWU 113 0.2084 (608/2918) 0 * Os_TE_119177 Os_TE_119177 Chr8 26865563 26865562 + WUWU 113 0.2336 (699/2992) 0 * Os_TE_119178 Os_TE_119168 Chr8 26861297 26861296 + STOWAWAY45_OS 266 0.0045 (13/2859) 0 * * Os_TE_119148 Chr8 26856248 26856249 + SPMLIKE 10989 0.0057 (17/2983) 0 * * Os_TE_119136 Chr8 26850252 26850253 - COPI2_LTR 4733 0.0013 (4/2982) 0 * Os_TE_119135 Os_TE_119135 Chr8 26850248 26850247 + COPI2_LTR 4733 0.0013 (4/2979) 0 * Os_TE_119136 Os_TE_119129 Chr8 26848496 26848497 - LINE-4_OS 3662 0.3430 (1026/2991) 0 * * Os_TE_119127 Chr8 26846258 26846259 + ORSgTETNOOT01930 140 0.0023 (7/2990) 0 * * Os_TE_119122 Chr8 26845464 26845463 + ORSgTEMT00100531 325 0.2515 (675/2684) 0 * Os_TE_119121 Os_TE_119121 Chr8 26845463 26845464 + NDNA1TNA_OS 334 0.2798 (765/2734) 0 * Os_TE_119122 Os_TE_119104 Chr8 26837671 26837670 - STOWAWAY51_OS 246 0.0033 (10/2987) 0 * Os_TE_119103 Os_TE_119103 Chr8 26837670 26837671 + TNR11 811 0.0034 (10/2984) 0 * Os_TE_119104 Os_TE_119055 Chr8 26826462 26826463 - ORSgTEMT01602404 253 0.0003 (1/2953) 0 * * Os_TE_119054 Chr8 26826290 26826291 - COPI2_LTR 4733 0.0003 (1/2973) 0 * * Os_TE_119050 Chr8 26823870 26823871 + AMYLTP 383 0.0929 (275/2959) 0 * Os_TE_119049 Os_TE_119049 Chr8 26823862 26823861 - AMYLTP 383 0.0947 (281/2967) 0 * Os_TE_119050 Os_TE_119019 Chr8 26814191 26814192 - OSCOPIA2_LTR 5476 0.0535 (160/2991) 0 * Os_TE_119018 Os_TE_119018 Chr8 26814187 26814186 + OSCOPIA2_LTR 5476 0.0542 (162/2988) 0 * Os_TE_119019 Os_TE_119017 Chr8 26813447 26813448 + ORSgTEMT01600756 231 0.0013 (4/2997) 0 * Os_TE_119016 Os_TE_119016 Chr8 26813445 26813444 + ORSgTEMT01602181 239 0.0013 (4/2998) 0 * Os_TE_119017 Os_TE_118987 Chr8 26809393 26809394 + AMYLTP 383 0.0017 (5/2939) 0 * * Os_TE_118968 Chr8 26798713 26798712 - ORSgTEMT00900099 250 0.0003 (1/2972) 0 * Os_TE_118967 Os_TE_118967 Chr8 26798709 26798710 - ORSgTEMT00901723 248 0.0007 (2/2979) 0 * Os_TE_118968 Os_TE_118966 Chr8 26798545 26798546 - INDITTO 263 0.0010 (3/2971) 0 * Os_TE_118965 Os_TE_118965 Chr8 26798543 26798542 + INDITTO 263 0.0010 (3/2964) 0 * Os_TE_118966 Os_TE_118964 Chr8 26798518 26798519 - ORSgTEMT00502171 134 0.0007 (2/2912) 0 * Os_TE_118963 Os_TE_118963 Chr8 26798516 26798515 - ORSgTEMT00501447 126 0.0007 (2/2976) 0 * Os_TE_118964 Os_TE_118962 Chr8 26798509 26798510 + ORSgTEMT00500201 140 0.0007 (2/2965) 0 * * Os_TE_118959 Chr8 26797057 26797056 - COPI2_LTR 4733 0.0003 (1/2877) 0 * * Os_TE_118952 Chr8 26793822 26793823 + OSR3_LTR 5201 0.0003 (1/2997) 0 * Os_TE_118951 Os_TE_118951 Chr8 26793818 26793817 - OSR3_LTR 5201 0.0003 (1/2994) 0 * Os_TE_118952 Os_TE_118949 Chr8 26793036 26793035 + MUJITOS1 3987 0.0010 (3/2994) 0 * * Os_TE_118935 Chr8 26785561 26785562 + MPING 430 0.0003 (1/2991) 0 * Os_TE_118934 Os_TE_118934 Chr8 26785559 26785558 - MPING 430 0.0003 (1/2990) 0 * Os_TE_118935 Os_TE_118933 Chr8 26785061 26785060 + ORSgTEMT00700017 386 0.0007 (2/2935) 0 * * Os_TE_118928 Chr8 26778621 26778620 - ORSgTEMT01601432 239 0.0220 (66/2998) 0 * Os_TE_118927 Os_TE_118927 Chr8 26778618 26778619 + ORSgTEMT01602181 239 0.0221 (66/2993) 0 * Os_TE_118928 Os_TE_118923 Chr8 26777859 26777860 + ORSgTEMT01601934 207 0.7774 (2281/2934) 0 * * Os_TE_118898 Chr8 26771803 26771804 + RIRE5-LTR_OS 6427 0.0007 (2/2988) 0 * Os_TE_118897 Os_TE_118897 Chr8 26771796 26771795 - RIRE5-LTR_OS 6427 0.0007 (2/2985) 0 * Os_TE_118898 Os_TE_118887 Chr8 26765276 26765277 + ORSgTETNOOT00908 242 0.0003 (1/2982) 0 * * Os_TE_118877 Chr8 26758784 26758785 - SC-3_LTR 5748 0.0003 (1/2993) 0 * Os_TE_118876 Os_TE_118876 Chr8 26758780 26758779 + ORSiTERTOOT00296 5553 0.0003 (1/2988) 0 * Os_TE_118877 Os_TE_118875 Chr8 26758681 26758682 - OSR3_LTR 5201 0.0037 (11/2994) 0 * Os_TE_118874 Os_TE_118874 Chr8 26758677 26758676 + OSR3_LTR 5201 0.0037 (11/2993) 0 * Os_TE_118875 Os_TE_118870 Chr8 26755434 26755435 + TNR2A 152 0.0010 (3/2915) 0 * * Os_TE_118833 Chr8 26741928 26741929 - NDNA1TNA_OS 334 0.0020 (6/2980) 0 * * Os_TE_118823 Chr8 26740876 26740877 + COPI2_LTR 4733 0.0003 (1/2993) 0 * Os_TE_118822 Os_TE_118822 Chr8 26740872 26740871 - COPI2_LTR 4733 0.0003 (1/2992) 0 * Os_TE_118823 Os_TE_118815 Chr8 26739390 26739391 + SPMLIKE 10989 0.0007 (2/2863) 0 * * Os_TE_118814 Chr8 26739173 26739172 - CACTA-H 1152 0.0825 (241/2920) 0 * Os_TE_118813 Os_TE_118813 Chr8 26739172 26739173 + CACTA-B 1103 0.0886 (259/2924) 0 * Os_TE_118814 Os_TE_118807 Chr8 26738363 26738364 - SZ-58LTR 114 0.0015 (2/1370) 0 * Os_TE_118806 Os_TE_118806 Chr8 26738356 26738355 + ENSPM4_OS 11610 0.5638 (1671/2964) 0 * Os_TE_118807 Os_TE_118801 Chr8 26737860 26737861 - MPING 430 0.0003 (1/2988) 0 * Os_TE_118800 Os_TE_118800 Chr8 26737858 26737857 + MPING 430 0.0003 (1/2990) 0 * Os_TE_118801 Os_TE_118798 Chr8 26736314 26736315 + RIREX_LTR 8828 0.0020 (6/2994) 0 * Os_TE_118797 Os_TE_118797 Chr8 26736310 26736309 - RIREX_LTR 8828 0.0020 (6/2996) 0 * Os_TE_118798 Os_TE_118789 Chr8 26732321 26732322 - COPIA2-LTR_OS 6433 0.0007 (2/2993) 0 * Os_TE_118788 Os_TE_118788 Chr8 26732317 26732316 + COPIA2-LTR_OS 6433 0.0007 (2/2993) 0 * Os_TE_118789 Os_TE_118784 Chr8 26729465 26729466 - COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_118783 Os_TE_118783 Chr8 26729461 26729460 + COPIA2-LTR_OS 6433 0.0003 (1/2977) 0 * Os_TE_118784 Os_TE_118777 Chr8 26725887 26725888 - ORSgTEMT01600650 234 0.0017 (5/2986) 0 * Os_TE_118776 Os_TE_118776 Chr8 26725883 26725882 - ORSgTEMT01601493 303 0.0017 (5/2988) 0 * Os_TE_118777 Os_TE_118775 Chr8 26725880 26725881 + ORSgTEMT01602609 233 0.0017 (5/2981) 0 * * Os_TE_118773 Chr8 26724978 26724979 + MERMITED 1572 0.0007 (2/2984) 0 * Os_TE_118772 Os_TE_118772 Chr8 26724973 26724972 + MERMITEA 1710 0.0007 (2/2986) 0 * Os_TE_118773 Os_TE_118771 Chr8 26724922 26724921 - ORSgTETNOOT00544 147 0.0007 (2/2996) 0 * * Os_TE_118695 Chr8 26606386 26606385 - COPIA2-LTR_OS 6433 0.0003 (1/2962) 0 * * Os_TE_118654 Chr8 26598383 26598384 - INDITTO 263 0.6212 (1858/2991) 0 * Os_TE_118653 Os_TE_118653 Chr8 26598381 26598380 + INDITTO 263 0.6202 (1850/2983) 0 * Os_TE_118654 Os_TE_118639 Chr8 26596064 26596065 - ORSgTEMT00502293 151 0.0007 (2/2991) 0 * * Os_TE_118613 Chr8 26589225 26589226 + OSTE33 1012 0.0257 (77/2998) 0 * Os_TE_118612 Os_TE_118612 Chr8 26589216 26589215 + OSTE33 1012 0.0247 (74/2996) 0 * Os_TE_118613 Os_TE_118599 Chr8 26587630 26587631 - RIREX_LTR 8828 0.0003 (1/2991) 0 * Os_TE_118598 Os_TE_118598 Chr8 26587626 26587625 + RIREX_LTR 8828 0.0003 (1/2994) 0 * Os_TE_118599 Os_TE_118597 Chr8 26587470 26587469 + STOWAWAY51_OS 246 0.0003 (1/2983) 0 * * Os_TE_118588 Chr8 26580011 26580010 - RETRO2_LTR 12874 0.0003 (1/2992) 0 * * Os_TE_118587 Chr8 26579951 26579952 + STOWAWAY18_OS 216 0.0020 (6/2988) 0 * Os_TE_118586 Os_TE_118586 Chr8 26579950 26579949 - STOWAWAY18_OS 216 0.0020 (6/2985) 0 * Os_TE_118587 Os_TE_118582 Chr8 26579198 26579197 + ORSgTEMT00500906 148 0.0003 (1/2988) 0 * * Os_TE_118566 Chr8 26569781 26569782 - RIREX_LTR 8828 0.0003 (1/2988) 0 * * Os_TE_118516 Chr8 26553015 26553016 + ORSgTETNOOT00908 242 0.0003 (1/2966) 0 * * Os_TE_118501 Chr8 26550984 26550983 + ORSgTEMT00800058 376 0.7473 (2239/2996) 0 * * Os_TE_118500 Chr8 26550552 26550553 + ORSgTETNOOT01834 251 0.0562 (168/2991) 0 * * Os_TE_118499 Chr8 26550533 26550532 + ORSgTETNOOT00908 242 0.0003 (1/2904) 0 * * Os_TE_118497 Chr8 26549967 26549968 - STOWAWAY13_OS 251 0.0007 (2/2985) 0 * * Os_TE_118495 Chr8 26548634 26548633 + ORSgTEMT01601934 207 0.0003 (1/2986) 0 * Os_TE_118494 Os_TE_118494 Chr8 26548631 26548632 + ORSgTEMT01602181 239 0.0003 (1/2985) 0 * Os_TE_118495 Os_TE_118489 Chr8 26543115 26543116 - ORSgTEMT03800066 376 0.0007 (2/2959) 0 * Os_TE_118488 Os_TE_118488 Chr8 26543113 26543112 + BUHUI 375 0.0003 (1/2952) 0 * Os_TE_118489 Os_TE_118483 Chr8 26541574 26541573 - SC-3_LTR 5748 0.4965 (1482/2985) 0 * * Os_TE_118473 Chr8 26537371 26537372 + TWIFB1 3737 0.0003 (1/2997) 0 * * Os_TE_118472 Chr8 26534880 26534881 - ORSgTEMT00600085 364 0.0007 (2/2987) 0 * * Os_TE_118446 Chr8 26523692 26523693 + GYPSY-A_LTR 8951 0.0040 (12/2974) 0 * Os_TE_118445 Os_TE_118445 Chr8 26523690 26523689 - RETROSAT2LTR 12796 0.0030 (9/2985) 0 * Os_TE_118446 Os_TE_118444 Chr8 26523580 26523581 - RETROSAT2LTR 12796 0.0262 (78/2972) 0 * * Os_TE_118441 Chr8 26522797 26522798 - SC-3_LTR 5748 0.0010 (3/2982) 0 * Os_TE_118440 Os_TE_118440 Chr8 26522793 26522792 + ORSiTERTOOT00296 5553 0.0010 (3/2984) 0 * Os_TE_118441 Os_TE_118435 Chr8 26521201 26521202 + RETROSAT4_LTR 13504 0.0037 (11/2998) 0 * Os_TE_118434 Os_TE_118434 Chr8 26521197 26521196 - RETROSAT4_LTR 13504 0.0033 (10/2999) 0 * Os_TE_118435 Os_TE_118427 Chr8 26518708 26518707 - DS-RICE2N 613 0.0003 (1/2990) 0 * * Os_TE_118403 Chr8 26512582 26512583 - STOWAWAY11_OS 292 0.5537 (1613/2913) 0 * * Os_TE_118400 Chr8 26510441 26510442 - COWARD 200 0.0007 (2/2988) 0 * * Os_TE_118389 Chr8 26505113 26505112 + STOWAWAY50_OS 174 0.0003 (1/2993) 0 * Os_TE_118388 Os_TE_118388 Chr8 26505112 26505113 + ORSgTEMT01700715 134 0.0003 (1/2989) 0 * Os_TE_118389 Os_TE_118373 Chr8 26499449 26499450 - STOLAB 312 0.0003 (1/2982) 0 * * Os_TE_118372 Chr8 26499088 26499089 + COPIA2-LTR_OS 6433 0.0007 (2/2975) 0 * Os_TE_118371 Os_TE_118371 Chr8 26499084 26499083 - COPIA2-LTR_OS 6433 0.0007 (2/2972) 0 * Os_TE_118372 Os_TE_118370 Chr8 26497556 26497557 - ORSgTETN00200001 10994 0.0003 (1/2994) 0 * Os_TE_118369 Os_TE_118369 Chr8 26497554 26497553 + SPMLIKE 10989 0.0003 (1/2997) 0 * Os_TE_118370 Os_TE_118363 Chr8 26496238 26496239 + COPIA2-LTR_OS 6433 0.0023 (7/2994) 0 * Os_TE_118362 Os_TE_118362 Chr8 26496234 26496233 - COPIA2-LTR_OS 6433 0.0023 (7/2993) 0 * Os_TE_118363 Os_TE_118329 Chr8 26489936 26481102 + RIREX_LTR 8828 0.0564 (169/2996) 1 Intact Os_TE_118325 Os_TE_118325 Chr8 26481102 26489936 - RIREX_LTR 8828 0.0564 (169/2997) 1 Intact Os_TE_118329 Os_TE_118302 Chr8 26479025 26478586 + RIREX_LTR 8828 0.0570 (163/2861) 1 Solo_LTR Os_TE_118300 Os_TE_118300 Chr8 26478586 26479025 - RIREX_LTR 8828 0.0604 (173/2866) 1 Solo_LTR Os_TE_118302 Os_TE_118225 Chr8 26467793 26467794 - ORSgTEMT00500351 146 0.0003 (1/2990) 0 * * Os_TE_118218 Chr8 26463988 26463989 - MUDRN3_OS 903 0.3998 (1191/2979) 0 * Os_TE_118217 Os_TE_118217 Chr8 26463980 26463979 - MUDRN3_OS 903 0.3938 (1168/2966) 0 * Os_TE_118218 Os_TE_118201 Chr8 26460248 26460249 - SC-3_LTR 5748 0.0007 (2/2910) 0 * * Os_TE_118198 Chr8 26458708 26458709 + ORSiTERTOOT00296 5553 0.0020 (6/2987) 0 * * Os_TE_118191 Chr8 26450758 26450759 + ORSiTERTOOT00296 5553 0.0003 (1/2983) 0 * Os_TE_118190 Os_TE_118190 Chr8 26450754 26450753 - SC-3_LTR 5748 0.0003 (1/2978) 0 * Os_TE_118191 Os_TE_118189 Chr8 26450506 26450507 - SC-3_LTR 5748 0.0003 (1/2994) 0 * Os_TE_118188 Os_TE_118188 Chr8 26450502 26450501 + ORSiTERTOOT00296 5553 0.0003 (1/2992) 0 * Os_TE_118189 Os_TE_118185 Chr8 26444391 26444390 + ORSgTETNOOT00908 242 0.0003 (1/2986) 0 * * Os_TE_118178 Chr8 26441775 26441776 - COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_118177 Os_TE_118177 Chr8 26441771 26441770 + COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_118178 Os_TE_118156 Chr8 26435407 26435408 - MuDR4_OS 7610 0.0003 (1/2947) 0 * Os_TE_118155 Os_TE_118155 Chr8 26435400 26435399 - MuDR4_OS 7610 0.0003 (1/2949) 0 * Os_TE_118156 Os_TE_118153 Chr8 26434461 26434462 - TRUNCATOR 2918 0.1412 (420/2975) 0 * * Os_TE_118114 Chr8 26425083 26425082 - ORSgTEMT01601768 238 0.0003 (1/2981) 0 * * Os_TE_118110 Chr8 26424668 26424669 - COPI2_LTR 4733 0.0003 (1/2977) 0 * Os_TE_118109 Os_TE_118109 Chr8 26424664 26424663 + COPI2_LTR 4733 0.0003 (1/2987) 0 * Os_TE_118110 Os_TE_118107 Chr8 26424036 26424037 - TNR2A 152 0.4082 (1205/2952) 0 * * Os_TE_118093 Chr8 26411684 26411685 + SZ-40LTR 2465 0.0003 (1/2988) 0 * Os_TE_118092 Os_TE_118092 Chr8 26411680 26411679 - SZ-40LTR 2465 0.0003 (1/2982) 0 * Os_TE_118093 Os_TE_118091 Chr8 26411642 26411643 + ORSgTEMT00500476 150 0.0003 (1/2992) 0 * * Os_TE_118088 Chr8 26409971 26409970 + ORSgTETNOOT01930 140 0.0003 (1/2989) 0 * * Os_TE_118087 Chr8 26409740 26409741 - RIREX_LTR 8828 0.0003 (1/2993) 0 * Os_TE_118086 Os_TE_118086 Chr8 26409736 26409735 + RIREX_LTR 8828 0.0003 (1/2994) 0 * Os_TE_118087 Os_TE_118080 Chr8 26408673 26408674 - MERMITED 1572 0.0003 (1/2962) 0 * Os_TE_118079 Os_TE_118079 Chr8 26408671 26408670 + MERMITED 1572 0.0003 (1/2963) 0 * Os_TE_118080 Os_TE_118071 Chr8 26405542 26405543 - MUDRN3_OS 903 0.0003 (1/2973) 0 * * Os_TE_118052 Chr8 26401119 26401120 - TNR2A 152 0.2821 (808/2864) 0 * Os_TE_118051 Os_TE_118051 Chr8 26401103 26401102 + TNR2A 152 0.2664 (753/2827) 0 * Os_TE_118052 Os_TE_118043 Chr8 26396814 26396815 - SC-3_LTR 5748 0.0003 (1/2912) 0 * Os_TE_118042 Os_TE_118042 Chr8 26396810 26396809 + ORSiTERTOOT00296 5553 0.0003 (1/2924) 0 * Os_TE_118043 Os_TE_118032 Chr8 26395157 26395158 + STOWAWAY9_OS 235 0.0003 (1/2988) 0 * * Os_TE_118022 Chr8 26388929 26388930 - ORSgTEMT00501987 127 0.0003 (1/2922) 0 * * Os_TE_118016 Chr8 26385781 26385782 - ORSgTEMT02000041 194 0.0596 (177/2968) 0 * * Os_TE_118005 Chr8 26382199 26382198 - OSTONOR1_LTR 6440 0.0003 (1/2940) 0 * * Os_TE_117966 Chr8 26360219 26359740 - MERMITE18A 532 0.1921 (543/2826) 1 Intact Os_TE_117964 Os_TE_117964 Chr8 26359738 26360217 + MERMITE18A 532 0.1822 (533/2925) 1 Intact Os_TE_117966 Os_TE_117959 Chr8 26357480 26357481 + MDR2 6967 0.0003 (1/2972) 0 * * Os_TE_117937 Chr8 26349427 26349428 - NDNA2TNA_OS 346 0.0004 (1/2546) 0 * * Os_TE_117927 Chr8 26348224 26348225 + STOWAWAY51_OS 246 0.0007 (2/2973) 0 * * Os_TE_117925 Chr8 26348106 26348107 + RIREX_LTR 8828 0.0007 (2/2971) 0 * Os_TE_117924 Os_TE_117924 Chr8 26348102 26348101 - RIREX_LTR 8828 0.0010 (3/2975) 0 * Os_TE_117925 Os_TE_117921 Chr8 26346847 26346846 - TYPEU 362 0.0004 (1/2484) 0 * * Os_TE_117880 Chr8 26335896 26335897 + RIREX_LTR 8828 0.0013 (4/2995) 0 * Os_TE_117879 Os_TE_117879 Chr8 26335892 26335891 - RIREX_LTR 8828 0.0013 (4/2996) 0 * Os_TE_117880 Os_TE_117875 Chr8 26333436 26333437 + TELIA 141 0.0024 (7/2890) 0 * Os_TE_117874 Os_TE_117874 Chr8 26333428 26333427 - TELIA 141 0.0024 (7/2896) 0 * Os_TE_117875 Os_TE_117873 Chr8 26332844 26332843 + CLOUD-7 495 0.0003 (1/2962) 0 * * Os_TE_117864 Chr8 26330338 26330337 + ORSgTEMT01601591 242 0.0003 (1/2988) 0 * * Os_TE_117860 Chr8 26327799 26327800 - SZ-48LTR 3632 0.0013 (4/2996) 0 * Os_TE_117859 Os_TE_117859 Chr8 26327795 26327794 + SZ-48LTR 3632 0.0013 (4/2998) 0 * Os_TE_117860 Os_TE_117852 Chr8 26324257 26324258 - HARB-1_OS 5166 0.0003 (1/2944) 0 * Os_TE_117851 Os_TE_117851 Chr8 26324255 26324254 + HARB-1_OS 5166 0.0003 (1/2930) 0 * Os_TE_117852 Os_TE_117834 Chr8 26318309 26318310 - ORSgTETNOOT00544 147 0.0003 (1/2917) 0 * Os_TE_117833 Os_TE_117833 Chr8 26318307 26318306 + ORSgTETNOOT01930 140 0.0003 (1/2940) 0 * Os_TE_117834 Os_TE_117829 Chr8 26317909 26317908 + STOWAWAY9_OS 235 0.0004 (1/2691) 0 * * Os_TE_117828 Chr8 26317844 26317845 - MDR2 6967 0.6148 (1671/2718) 0 * Os_TE_117827 Os_TE_117827 Chr8 26317836 26317835 + MDR2 6967 0.6500 (1907/2934) 0 * Os_TE_117828 Os_TE_117824 Chr8 26315018 26315019 + COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_117823 Os_TE_117823 Chr8 26315014 26315013 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_117824 Os_TE_117820 Chr8 26313944 26313943 + TWIFBIG 3567 0.0004 (1/2804) 0 * * Os_TE_117808 Chr8 26307471 26307472 + TNR2A 152 0.0023 (7/2988) 0 * Os_TE_117807 Os_TE_117807 Chr8 26307455 26307454 - TNR2A 152 0.0023 (7/2991) 0 * Os_TE_117808 Os_TE_117802 Chr8 26306774 26306775 - MERMITEJ 1498 0.0003 (1/2979) 0 * Os_TE_117801 Os_TE_117801 Chr8 26306766 26306765 + MERMITEA 1710 0.0003 (1/2988) 0 * Os_TE_117802 Os_TE_117770 Chr8 26295205 26295206 - SC-8_LTR 4951 0.0003 (1/2999) 0 * * Os_TE_117747 Chr8 26274889 26274890 - SZ-44LTR 1408 0.0003 (1/2993) 0 * * Os_TE_117745 Chr8 26274828 26274827 + ORSgTEMT00500201 140 0.0931 (278/2985) 0 * Os_TE_117744 Os_TE_117744 Chr8 26274827 26274828 - ORSgTETNOOT01930 140 0.0937 (280/2987) 0 * Os_TE_117745 Os_TE_117741 Chr8 26273710 26273711 + ORSgTETNOOT00072 203 0.1322 (240/1815) 0 * Os_TE_117740 Os_TE_117740 Chr8 26273701 26273700 - ORSgTETNOOT00355 222 0.1319 (248/1880) 0 * Os_TE_117741 Os_TE_117739 Chr8 26273642 26273452 - COWARD 200 0.7598 (794/1045) 1 Intact Os_TE_117738 Os_TE_117738 Chr8 26273452 26273642 + COWARD-3 221 0.8626 (1632/1892) 1 Intact Os_TE_117739 Os_TE_117712 Chr8 26262976 26262975 - ORSgTETNOOT00355 222 0.0003 (1/2980) 0 * * Os_TE_117710 Chr8 26262728 26262729 + ORSgTEMT01601591 242 0.0910 (270/2967) 0 * * Os_TE_117705 Chr8 26260818 26260819 - INDITTO 263 0.8316 (2464/2963) 0 * Os_TE_117704 Os_TE_117704 Chr8 26260815 26260814 + INDITTO 263 0.8317 (2446/2941) 0 * Os_TE_117705 Os_TE_117702 Chr8 26260021 26260022 - LINE-4_OS 3662 0.0017 (4/2336) 0 * * Os_TE_117699 Chr8 26258569 26258568 + EXPLORER 210 0.0085 (5/591) 0 * * Os_TE_117698 Chr8 26258461 26258462 + ORSgTEMT01601445 230 0.8232 (2309/2805) 0 * * Os_TE_117694 Chr8 26257963 26257962 - TYPEM 227 0.0928 (257/2768) 0 * * Os_TE_117693 Chr8 26257926 26257659 - STOWAWAY36_OS 268 0.1965 (515/2621) 1 Intact * Os_TE_117688 Chr8 26257571 26257570 + HELITRON7_OS 10153 0.1361 (359/2638) 0 * Os_TE_117687 Os_TE_117687 Chr8 26257567 26257568 - HELITRON7_OS 10153 0.1374 (406/2954) 0 * Os_TE_117688 Os_TE_117658 Chr8 26238934 26238935 - ORSgTERT00201216 11284 0.0443 (132/2981) 0 * Os_TE_117657 Os_TE_117657 Chr8 26238930 26238929 - RIRE2_LTR 11306 0.0446 (133/2983) 0 * Os_TE_117658 Os_TE_117655 Chr8 26238518 26238519 + MERMITEA 1710 0.0003 (1/2899) 0 * Os_TE_117654 Os_TE_117654 Chr8 26238510 26238509 - MERMITEA 1710 0.0003 (1/2909) 0 * Os_TE_117655 Os_TE_117629 Chr8 26230797 26230798 + MPING 430 0.0010 (3/2985) 0 * Os_TE_117628 Os_TE_117628 Chr8 26230795 26230794 - MPING 430 0.0010 (3/2991) 0 * Os_TE_117629 Os_TE_117627 Chr8 26230777 26230776 - STOWAWAY51_OS 246 0.0007 (2/2990) 0 * * Os_TE_117626 Chr8 26230768 26230769 - ORSgTEMT00900099 250 0.0004 (1/2698) 0 * * Os_TE_117623 Chr8 26229671 26229672 + TWIF 586 0.0003 (1/2945) 0 * Os_TE_117622 Os_TE_117622 Chr8 26229664 26229663 - ORSiTETNOOT00134 607 0.0003 (1/2933) 0 * Os_TE_117623 Os_TE_117619 Chr8 26227293 26227292 + ORSgTETNOOT00670 249 0.1101 (328/2978) 0 * * Os_TE_117618 Chr8 26227286 26227287 - STOWAWAY44_OS 240 0.0003 (1/2959) 0 * * Os_TE_117617 Chr8 26227034 26227033 - ORSgTETNOOT01474 137 0.1424 (423/2970) 0 * * Os_TE_117616 Chr8 26227026 26226688 - ORSgTEMT00101455 342 0.8693 (2515/2893) 1 Intact * Os_TE_117587 Chr8 26222762 26222763 + RIRE2_LTR 11306 0.1094 (327/2988) 0 * Os_TE_117586 Os_TE_117586 Chr8 26222758 26222757 - RIRE2_LTR 11306 0.1125 (336/2986) 0 * Os_TE_117587 Os_TE_117585 Chr8 26221040 26221039 + ORSgTETNOOT01930 140 0.0017 (5/2971) 0 * * Os_TE_117575 Chr8 26213037 26213036 + ORSgTEMT01602029 239 0.0003 (1/2971) 0 * Os_TE_117574 Os_TE_117574 Chr8 26213028 26213029 + ORSgTEMT01601934 207 0.0003 (1/2985) 0 * Os_TE_117575 Os_TE_117573 Chr8 26212393 26212392 - STOWAWAY44_OS 240 0.0008 (2/2568) 0 * Os_TE_117572 Os_TE_117572 Chr8 26212390 26212391 - STOWAWAY44_OS 240 0.0008 (2/2603) 0 * Os_TE_117573 Os_TE_117562 Chr8 26209796 26209795 - TRUNCATOR 2918 0.0955 (283/2964) 0 * Os_TE_117561 Os_TE_117561 Chr8 26209795 26209796 + TRUNCATOR 2918 0.1016 (303/2983) 0 * Os_TE_117562 Os_TE_117556 Chr8 26206576 26206575 + SC-8_LTR 4951 0.0003 (1/2992) 0 * * Os_TE_117536 Chr8 26196828 26196829 - F770 284 0.0219 (65/2963) 0 * Os_TE_117535 Os_TE_117535 Chr8 26196826 26196825 + F770 284 0.0216 (64/2966) 0 * Os_TE_117536 Os_TE_117531 Chr8 26196324 26196325 - RETRO1_LTR 8314 0.0003 (1/2981) 0 * * Os_TE_117468 Chr8 26173095 26173094 + ORSgTEMT01601591 242 0.0003 (1/2995) 0 * Os_TE_117467 Os_TE_117467 Chr8 26173089 26173090 + STOWAWAY51_OS 246 0.0003 (1/2988) 0 * Os_TE_117468 Os_TE_117428 Chr8 26164713 26164714 - COPI2_LTR 4733 0.0020 (6/2991) 0 * Os_TE_117427 Os_TE_117427 Chr8 26164709 26164708 + COPI2_LTR 4733 0.0017 (5/2988) 0 * Os_TE_117428 Os_TE_117422 Chr8 26163953 26163954 - COPI2_LTR 4733 0.0007 (2/2992) 0 * Os_TE_117421 Os_TE_117421 Chr8 26163949 26163948 + COPI2_LTR 4733 0.0003 (1/2990) 0 * Os_TE_117422 Os_TE_117418 Chr8 26162444 26162445 + ORSiTERTOOT00332 5395 0.0007 (2/2995) 0 * Os_TE_117417 Os_TE_117417 Chr8 26162440 26162439 - ORSiTERTOOT00332 5395 0.0007 (2/2993) 0 * Os_TE_117418 Os_TE_117416 Chr8 26162371 26162372 - ORSgTEMT00502214 125 0.0003 (1/2990) 0 * * Os_TE_117410 Chr8 26160126 26160127 - SZ-22_LTR 4403 0.0034 (10/2952) 0 * Os_TE_117409 Os_TE_117409 Chr8 26160122 26160121 + ORSiTERTOOT00226 792 0.0033 (10/2995) 0 * Os_TE_117410 Os_TE_117394 Chr8 26149377 26149378 + NDNA1TNA_OS 334 0.3383 (1012/2991) 0 * * Os_TE_117392 Chr8 26148893 26148892 + ORSiTERTOOT00226 792 0.0010 (3/2970) 0 * * Os_TE_117384 Chr8 26139859 26139860 + ORSgTEMT01700044 149 0.0003 (1/2989) 0 * Os_TE_117383 Os_TE_117383 Chr8 26139855 26139854 - ORSgTEMT01700299 212 0.0003 (1/2993) 0 * Os_TE_117384 Os_TE_117382 Chr8 26139852 26139853 + ORSgTEMT01701104 154 0.0003 (1/2992) 0 * * Os_TE_117374 Chr8 26133859 26133858 + F770 284 0.6796 (1436/2113) -1 * * Os_TE_117342 Chr8 26122833 26122834 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_117341 Os_TE_117341 Chr8 26122829 26122828 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_117342 Os_TE_117336 Chr8 26119320 26119319 - STOWAWAY44_OS 240 0.0020 (6/2982) 0 * * Os_TE_117329 Chr8 26118291 26118292 - ORSgTEMT01700411 151 0.0003 (1/2975) 0 * * Os_TE_117312 Chr8 26113383 26113384 + ORSiTERTOOT00074 4935 0.0003 (1/2972) 0 * Os_TE_117311 Os_TE_117311 Chr8 26113379 26113378 - ORSiTERTOOT00074 4935 0.0003 (1/2972) 0 * Os_TE_117312 Os_TE_117287 Chr8 26109393 26109392 + NDNA1TNA_OS 334 0.0003 (1/2975) 0 * Os_TE_117286 Os_TE_117286 Chr8 26109392 26109393 + ORSgTEMT00100272 356 0.0003 (1/2973) 0 * Os_TE_117287 Os_TE_117285 Chr8 26109328 26109329 + ENSPM6_OS 9815 0.0034 (10/2960) 0 * Os_TE_117284 Os_TE_117284 Chr8 26109326 26109325 - ENSPM6_OS 9815 0.0034 (10/2965) 0 * Os_TE_117285 Os_TE_117279 Chr8 26108525 26108526 - COPIA2-LTR_OS 6433 0.0003 (1/2963) 0 * Os_TE_117278 Os_TE_117278 Chr8 26108521 26108520 + COPIA2-LTR_OS 6433 0.0003 (1/2964) 0 * Os_TE_117279 Os_TE_117257 Chr8 26102770 26102511 - ORSgTEMT00900075 250 0.4706 (1032/2193) 1 Intact * Os_TE_117243 Chr8 26099700 26099699 + EXPLORER 210 0.0003 (1/2939) 0 * * Os_TE_117238 Chr8 26096142 26096143 - SC-3_LTR 5748 0.0010 (3/2980) 0 * Os_TE_117237 Os_TE_117237 Chr8 26096138 26096137 + ORSiTERTOOT00296 5553 0.0010 (3/2975) 0 * Os_TE_117238 Os_TE_117232 Chr8 26094809 26094810 + COPI2_LTR 4733 0.0003 (1/2993) 0 * Os_TE_117231 Os_TE_117231 Chr8 26094805 26094804 - COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_117232 Os_TE_117210 Chr8 26088342 26088343 - ORSgTEMT01701882 154 0.0005 (1/1822) 0 * * Os_TE_117205 Chr8 26086182 26086183 + ORSgTEMT01601591 242 0.0047 (14/2983) 0 * * Os_TE_117149 Chr8 26075599 26075600 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_117148 Os_TE_117148 Chr8 26075595 26075594 + COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_117149 Os_TE_117141 Chr8 26069055 26069056 + COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_117140 Os_TE_117140 Chr8 26069051 26069050 - COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_117141 Os_TE_117125 Chr8 26060651 26060652 - HARB-1_OS 5166 0.0003 (1/2970) 0 * Os_TE_117124 Os_TE_117124 Chr8 26060649 26060648 + HARB-1_OS 5166 0.0003 (1/2975) 0 * Os_TE_117125 Os_TE_117112 Chr8 26051812 26057457 - RETRO2_LTR 12874 0.2994 (892/2979) 1 Intact * Os_TE_117093 Chr8 26046029 26046028 + NDNA1TNA_OS 334 0.0003 (1/2962) 0 * * Os_TE_117026 Chr8 26032509 26032510 - COPI2_LTR 4733 0.0676 (201/2972) 0 * Os_TE_117025 Os_TE_117025 Chr8 26032505 26032504 + COPI2_LTR 4733 0.0664 (197/2968) 0 * Os_TE_117026 Os_TE_117024 Chr8 26032155 26032156 - CPSC2_LTR 5202 0.0003 (1/2997) 0 * * Os_TE_117022 Chr8 26031490 26031489 - SZ-67LTR 1540 0.0013 (4/2987) 0 * * Os_TE_116969 Chr8 26023767 26023768 - INDITTO 263 0.0699 (204/2918) 0 * * Os_TE_116966 Chr8 26022589 26022590 + AMYLTP 383 0.0030 (9/2974) 0 * Os_TE_116965 Os_TE_116965 Chr8 26022581 26022580 - AMYLTP 383 0.0034 (10/2949) 0 * Os_TE_116966 Os_TE_116961 Chr8 26020985 26020984 - ORSiTERTOOT00332 5395 0.0007 (2/2999) 0 * * Os_TE_116945 Chr8 26016724 26016723 + TNR2A 152 0.0003 (1/2987) 0 * * Os_TE_116942 Chr8 26015941 26015940 - RIREX_LTR 8828 0.0041 (12/2957) 0 * * Os_TE_116932 Chr8 26014273 26014274 - OSTONOR1_LTR 6440 0.0020 (6/2983) 0 * * Os_TE_116915 Chr8 26010929 26010782 + ORSgTETNOOT02448 143 0.7405 (956/1291) 1 Intact * Os_TE_116902 Chr8 26009750 25998716 + CACTA-B 1103 0.3186 (939/2947) 1 Intact Os_TE_116898 Os_TE_116898 Chr8 25998716 26009683 - ORSgTETN00200001 10994 0.3195 (946/2961) 1 Intact Os_TE_116902 Os_TE_116893 Chr8 25996749 25996750 - TRUNCATOR 2918 0.0801 (216/2697) -1 * * Os_TE_116881 Chr8 25985102 25985103 + SZ-40LTR 2465 0.0003 (1/2977) 0 * Os_TE_116880 Os_TE_116880 Chr8 25985098 25985097 - SZ-40LTR 2465 0.0003 (1/2983) 0 * Os_TE_116881 Os_TE_116851 Chr8 25949944 25949943 - ORSgTEMT01602404 253 0.0003 (1/2950) 0 * * Os_TE_116839 Chr8 25943618 25948409 - RETROFIT7_LTR 4788 0.3311 (984/2972) 1 Intact * Os_TE_116806 Chr8 25914598 25930502 + RETRO2_LTR 12874 0.3252 (975/2998) 1 Intact * Os_TE_116787 Chr8 25910075 25910074 - OSTONOR1_LTR 6440 0.0010 (3/2999) 0 * * Os_TE_116778 Chr8 25907850 25908141 - STOWAWAY11_OS 292 0.3302 (963/2916) 1 Intact * Os_TE_116767 Chr8 25903082 25903081 + ORSgTEMT01400032 215 0.0003 (1/2971) 0 * * Os_TE_116764 Chr8 25902058 25902059 + TREP220 109 0.0077 (23/2995) 0 * * Os_TE_116763 Chr8 25900746 25900745 - ORSiTETNOOT00134 607 0.0012 (1/858) 0 * * Os_TE_116741 Chr8 25885034 25885035 + COPI2_LTR 4733 0.0003 (1/2955) 0 * * Os_TE_116738 Chr8 25884266 25884267 - NDNA1TNA_OS 334 0.0003 (1/2961) 0 * Os_TE_116737 Os_TE_116737 Chr8 25884264 25884263 + NDNA1TNA_OS 334 0.0003 (1/2960) 0 * Os_TE_116738 Os_TE_116728 Chr8 25881475 25881474 - NDNA1TNA_OS 334 0.0056 (16/2851) 0 * * Os_TE_116723 Chr8 25880778 25880777 - STOWAWAY1_OS 149 0.0003 (1/2987) 0 * Os_TE_116722 Os_TE_116722 Chr8 25880777 25880778 + ORSgTEMT01701591 154 0.0003 (1/2988) 0 * Os_TE_116723 Os_TE_116717 Chr8 25875627 25875626 - OSTE18 129 0.0003 (1/2994) 0 * Os_TE_116716 Os_TE_116716 Chr8 25875622 25875623 - OSTE18 129 0.0003 (1/2997) 0 * Os_TE_116717 Os_TE_116703 Chr8 25865016 25865017 + NDNA1TNA_OS 334 0.0003 (1/2973) 0 * Os_TE_116702 Os_TE_116702 Chr8 25865014 25865013 - NDNA1TNA_OS 334 0.0003 (1/2977) 0 * Os_TE_116703 Os_TE_116700 Chr8 25864897 25864898 + TWIFB1 3737 0.0007 (2/2976) 0 * * Os_TE_116692 Chr8 25861486 25861487 - SC-8_LTR 4951 0.0003 (1/2984) 0 * Os_TE_116691 Os_TE_116691 Chr8 25861482 25861481 + SC-8_LTR 4951 0.0003 (1/2979) 0 * Os_TE_116692 Os_TE_116666 Chr8 25839501 25839502 + ORSiTERTOOT00296 5553 0.0007 (2/2987) 0 * * Os_TE_116662 Chr8 25836679 25836680 + TNR8-1 418 0.0003 (1/2953) 0 * * Os_TE_116647 Chr8 25830513 25830514 - SC-3_LTR 5748 0.0010 (3/2998) 0 * Os_TE_116646 Os_TE_116646 Chr8 25830509 25830508 + ORSiTERTOOT00296 5553 0.0010 (3/2995) 0 * Os_TE_116647 Os_TE_116642 Chr8 25827477 25827476 + OSTE9 421 0.0017 (5/2967) 0 * * Os_TE_116640 Chr8 25827138 25827137 + ORSgTETNOOT00908 242 0.0188 (56/2986) 0 * * Os_TE_116622 Chr8 25817690 25817421 - ORSgTEMT06100010 269 0.8614 (2573/2987) 1 Intact Os_TE_116618 Os_TE_116618 Chr8 25817421 25817689 + ORSgTEMT06100010 269 0.8610 (2577/2993) 1 Intact Os_TE_116622 Os_TE_116617 Chr8 25817347 25817346 - ORSgTEMT00901469 250 0.0007 (2/2994) 0 * * Os_TE_116590 Chr8 25805281 25805282 + COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_116589 Os_TE_116589 Chr8 25805277 25805276 - COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_116590 Os_TE_116588 Chr8 25805165 25805166 + RIREX_LTR 8828 0.0053 (16/2993) 0 * Os_TE_116587 Os_TE_116587 Chr8 25805161 25805160 - RIREX_LTR 8828 0.0053 (16/2995) 0 * Os_TE_116588 Os_TE_116586 Chr8 25804548 25804549 - ORSgTEMT04200023 393 0.0003 (1/2973) 0 * Os_TE_116585 Os_TE_116585 Chr8 25804540 25804539 - ECR 394 0.0003 (1/2973) 0 * Os_TE_116586 Os_TE_116583 Chr8 25803056 25803057 - INDITTO 263 0.0003 (1/2986) 0 * * Os_TE_116579 Chr8 25799875 25799876 - SC-3_LTR 5748 0.0003 (1/2982) 0 * * Os_TE_116577 Chr8 25799056 25799057 - MuDR4_OS 7610 0.0054 (16/2990) 0 * Os_TE_116576 Os_TE_116576 Chr8 25799046 25799045 - MuDR4_OS 7610 0.0047 (14/2990) 0 * Os_TE_116577 Os_TE_116567 Chr8 25796050 25796051 - ORSiTERTOOT00308 5023 0.0003 (1/2973) 0 * Os_TE_116566 Os_TE_116566 Chr8 25796046 25796045 + SC-10_LTR 4920 0.0003 (1/2977) 0 * Os_TE_116567 Os_TE_116565 Chr8 25793887 25793888 + RETRO2A_LTR 12895 0.0198 (58/2935) 0 * Os_TE_116564 Os_TE_116564 Chr8 25793883 25793882 - RETRO2A_LTR 12895 0.0197 (58/2937) 0 * Os_TE_116565 Os_TE_116562 Chr8 25793385 25793386 - COPI2_LTR 4733 0.0020 (6/2955) 0 * * Os_TE_116508 Chr8 25771925 25771924 + MUDRN5_OS 374 0.0003 (1/2994) 0 * * Os_TE_116507 Chr8 25771782 25771781 + ORSgTEMT00900533 246 0.0003 (1/2998) 0 * Os_TE_116506 Os_TE_116506 Chr8 25771778 25771779 + ORSgTEMT00900897 248 0.0003 (1/2995) 0 * Os_TE_116507 Os_TE_116505 Chr8 25769466 25769467 + COWARD-3 221 0.0003 (1/2998) 0 * * Os_TE_116503 Chr8 25769206 25769207 + ORSiTERT00200145 12238 0.0007 (2/2995) 0 * * Os_TE_116502 Chr8 25768951 25768952 - ORSiTERT00100062 5674 0.0050 (15/2996) 0 * Os_TE_116501 Os_TE_116501 Chr8 25768947 25768946 + OSTONOR1_LTR 6440 0.0057 (17/2997) 0 * Os_TE_116502 Os_TE_116497 Chr8 25763497 25763496 + ORSiTERTOOT00226 792 0.0003 (1/2991) 0 * * Os_TE_116496 Chr8 25762406 25762407 + STOWAWAY9_OS 235 0.0063 (19/2994) 0 * Os_TE_116495 Os_TE_116495 Chr8 25762404 25762403 + ORSgTEMT01400012 212 0.0044 (13/2983) 0 * Os_TE_116496 Os_TE_116492 Chr8 25761295 25761296 - ORSgTEMT00100242 351 0.0067 (20/2994) 0 * * Os_TE_116485 Chr8 25758331 25758332 + SZ-54B_LTR 5183 0.0064 (19/2982) 0 * * Os_TE_116484 Chr8 25758187 25758186 + NDNA1TNA_OS 334 0.0060 (18/2988) 0 * Os_TE_116483 Os_TE_116483 Chr8 25758186 25758187 + ORSgTEMT00100272 356 0.0057 (17/2980) 0 * Os_TE_116484 Os_TE_116453 Chr8 25742798 25742799 + SZ-55_LTR 10318 0.0003 (1/2993) 0 * Os_TE_116452 Os_TE_116452 Chr8 25742794 25742793 - SZ-55_LTR 10318 0.0003 (1/2992) 0 * Os_TE_116453 Os_TE_116451 Chr8 25740991 25740992 + SZ-55_LTR 10318 0.0007 (2/2957) 0 * Os_TE_116450 Os_TE_116450 Chr8 25740987 25740986 - SZ-55_LTR 10318 0.0007 (2/2957) 0 * Os_TE_116451 Os_TE_116449 Chr8 25739600 25739601 + CASGRANDA 465 0.3550 (1054/2969) 0 * * Os_TE_116428 Chr8 25731583 25731584 + COPIA2-LTR_OS 6433 0.0010 (3/2969) 0 * Os_TE_116427 Os_TE_116427 Chr8 25731579 25731578 - COPIA2-LTR_OS 6433 0.0010 (3/2970) 0 * Os_TE_116428 Os_TE_116423 Chr8 25728561 25728562 + ORSiTERTOOT00027 10853 0.0170 (51/2995) 0 * Os_TE_116422 Os_TE_116422 Chr8 25728557 25728556 - RIRE3A_LTR 10580 0.0171 (51/2977) 0 * Os_TE_116423 Os_TE_116383 Chr8 25705685 25705686 - OLO24 345 0.0003 (1/2986) 0 * Os_TE_116382 Os_TE_116382 Chr8 25705683 25705682 + OLO24 345 0.0003 (1/2990) 0 * Os_TE_116383 Os_TE_116370 Chr8 25695493 25695494 - COPIA2-LTR_OS 6433 0.0005 (1/1887) 0 * Os_TE_116369 Os_TE_116369 Chr8 25695489 25695488 + COPIA2-LTR_OS 6433 0.0003 (1/2917) 0 * Os_TE_116370 Os_TE_116368 Chr8 25695462 25695463 + SZ-55_LTR 10318 0.0003 (1/2858) 0 * * Os_TE_116358 Chr8 25689446 25689445 - STOWAWAY50_OS 174 0.0003 (1/2981) 0 * Os_TE_116357 Os_TE_116357 Chr8 25689443 25689444 - ORSgTEMT01701882 154 0.0003 (1/2987) 0 * Os_TE_116358 Os_TE_116332 Chr8 25668347 25673698 - SC-3_LTR 5748 0.5935 (1778/2996) 0.81 Intact * Os_TE_116325 Chr8 25666270 25666271 - CRM-LTR_OS 7749 0.4446 (1316/2960) 0 * Os_TE_116324 Os_TE_116324 Chr8 25666266 25666265 + CRM-LTR_OS 7749 0.4427 (1305/2948) 0 * Os_TE_116325 Os_TE_116319 Chr8 25664877 25664876 + ORSgTETNOOT00908 242 0.0020 (6/2980) 0 * * Os_TE_116316 Chr8 25659949 25659948 - AMYLTP 383 0.2693 (805/2989) 0 * * Os_TE_116311 Chr8 25655742 25655743 + SC-8_LTR 4951 0.0010 (3/2973) 0 * Os_TE_116310 Os_TE_116310 Chr8 25655738 25655737 - SC-8_LTR 4951 0.0010 (3/2975) 0 * Os_TE_116311 Os_TE_116298 Chr8 25648839 25648840 + SZ-61LTR 2410 0.0057 (17/2993) 0 * * Os_TE_116296 Chr8 25648678 25648679 - RETRO2_LTR 12874 0.0064 (19/2990) 0 * Os_TE_116295 Os_TE_116295 Chr8 25648674 25648673 + RETRO2_LTR 12874 0.0063 (19/2993) 0 * Os_TE_116296 Os_TE_116282 Chr8 25647298 25647299 - MPING 430 0.0003 (1/2992) 0 * Os_TE_116281 Os_TE_116281 Chr8 25647296 25647295 + MPING 430 0.0003 (1/2987) 0 * Os_TE_116282 Os_TE_116274 Chr8 25646082 25646083 - ORSgTETNOOT01243 137 0.0003 (1/2992) 0 * * Os_TE_116262 Chr8 25642678 25642679 - RIREX_LTR 8828 0.0003 (1/2957) 0 * Os_TE_116261 Os_TE_116261 Chr8 25642674 25642673 + RIREX_LTR 8828 0.0003 (1/2959) 0 * Os_TE_116262 Os_TE_116244 Chr8 25639250 25639251 - MPING 430 0.0003 (1/2986) 0 * Os_TE_116243 Os_TE_116243 Chr8 25639248 25639247 + MPING 430 0.0003 (1/2986) 0 * Os_TE_116244 Os_TE_116214 Chr8 25626883 25626884 - DS-RICE2N 613 0.0003 (1/2998) 0 * Os_TE_116213 Os_TE_116213 Chr8 25626876 25626875 + DS-RICE4N 715 0.0003 (1/2997) 0 * Os_TE_116214 Os_TE_116212 Chr8 25626737 25626738 - HARB-1_OS 5166 0.0080 (24/2987) 0 * Os_TE_116211 Os_TE_116211 Chr8 25626735 25626734 + HARB-1_OS 5166 0.0084 (25/2990) 0 * Os_TE_116212 Os_TE_116207 Chr8 25625446 25625447 - NDNA1TNA_OS 334 0.0003 (1/2968) 0 * * Os_TE_116205 Chr8 25625418 25625419 + OSTE33 1012 0.0047 (14/2981) 0 * Os_TE_116204 Os_TE_116204 Chr8 25625409 25625408 + OSTE33 1012 0.0050 (15/2979) 0 * Os_TE_116205 Os_TE_116192 Chr8 25621609 25621610 + ORSgTETNOOT00670 249 0.0003 (1/2921) 0 * * Os_TE_116163 Chr8 25616235 25616234 - ORSgTETNOOT02000 263 0.0986 (289/2930) 0 * * Os_TE_116157 Chr8 25612473 25612474 + HARB-1_OS 5166 0.0305 (91/2984) 0 * Os_TE_116156 Os_TE_116156 Chr8 25612471 25612470 - HARB-1_OS 5166 0.0309 (92/2982) 0 * Os_TE_116157 Os_TE_116143 Chr8 25610527 25610528 - rn_179-105_LTR 4837 0.0030 (9/2979) 0 * Os_TE_116142 Os_TE_116142 Chr8 25610522 25610521 + rn_179-105_LTR 4837 0.0030 (9/2980) 0 * Os_TE_116143 Os_TE_116140 Chr8 25604424 25604425 + CLOUD-7 495 0.0010 (3/2984) 0 * * Os_TE_116131 Chr8 25599806 25599807 - COPIA2-LTR_OS 6433 0.0020 (6/2984) 0 * * Os_TE_116125 Chr8 25598672 25598671 + TRUNCATOR 2918 0.1489 (446/2995) 0 * Os_TE_116124 Os_TE_116124 Chr8 25598671 25598672 - TRUNCATOR 2918 0.1784 (371/2080) 0 * Os_TE_116125 Os_TE_116119 Chr8 25597875 25598628 - MUDRN3_OS 903 0.6159 (1318/2140) 1 Intact * Os_TE_116107 Chr8 25590997 25590998 - ORSgTEMT01601208 238 0.1493 (437/2927) 0 * * Os_TE_116102 Chr8 25588919 25588920 + OSR3_LTR 5201 0.0020 (6/2992) 0 * * Os_TE_116085 Chr8 25582166 25582167 + TYPEU1 380 0.0007 (2/2989) 0 * * Os_TE_116064 Chr8 25568970 25568969 + OLO24C 356 0.0019 (5/2597) 0 * * Os_TE_116056 Chr8 25566548 25566549 - SZ-9LTR 965 0.0069 (18/2612) 0 * * Os_TE_116025 Chr8 25537250 25537251 - ORSgTEMT01600223 220 0.0004 (1/2386) 0 * * Os_TE_116024 Chr8 25537012 25537013 + SPMLIKE 10989 0.0028 (7/2543) 0 * Os_TE_116023 Os_TE_116023 Chr8 25537010 25537009 - SPMLIKE 10989 0.0024 (6/2546) 0 * Os_TE_116024 Os_TE_116006 Chr8 25532376 25532377 + ORSgTEMT00600272 361 0.0023 (6/2615) 0 * * Os_TE_115987 Chr8 25502907 25502906 - SZ-5LTR 1223 0.0003 (1/2935) 0 * * Os_TE_115979 Chr8 25500283 25500284 - COPIA2-LTR_OS 6433 0.0004 (1/2813) 0 * Os_TE_115978 Os_TE_115978 Chr8 25500279 25500278 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_115979 Os_TE_115977 Chr8 25500253 25500252 + ORSgTEMT00200131 146 0.6202 (1857/2994) 0 * Os_TE_115976 Os_TE_115976 Chr8 25500252 25500253 - ORSgTEMT01700029 143 0.6212 (1855/2986) 0 * Os_TE_115977 Os_TE_115975 Chr8 25498078 25498077 + ORSgTETNOOT01930 140 0.0063 (18/2866) 0 * Os_TE_115974 Os_TE_115974 Chr8 25498071 25498072 + ORSgTETNOOT01778 120 0.0058 (17/2922) 0 * Os_TE_115975 Os_TE_115973 Chr8 25497566 25497567 - NDNA1TNA_OS 334 0.0058 (17/2946) 0 * * Os_TE_115972 Chr8 25494915 25494914 - ORSgTEMT01400022 212 0.0064 (19/2979) 0 * Os_TE_115971 Os_TE_115971 Chr8 25494913 25494914 - STOWAWAY9_OS 235 0.0067 (20/2980) 0 * Os_TE_115972 Os_TE_115942 Chr8 25481152 25481153 - ORSiTETNOOT00134 607 0.0060 (17/2817) 0 * Os_TE_115941 Os_TE_115941 Chr8 25481145 25481144 + TWIF 586 0.0034 (10/2968) 0 * Os_TE_115942 Os_TE_115938 Chr8 25480058 25480059 - ORSgTEMT00900892 250 0.0007 (2/2976) 0 * * Os_TE_115925 Chr8 25474797 25474798 + INDITTO 263 0.1051 (312/2970) 0 * Os_TE_115924 Os_TE_115924 Chr8 25474795 25474794 - INDITTO 263 0.1037 (308/2971) 0 * Os_TE_115925 Os_TE_115921 Chr8 25474297 25474298 + ORSgTETNOOT00032 218 0.0061 (18/2964) 0 * * Os_TE_115906 Chr8 25473128 25473129 + QINNIU 528 0.0007 (2/2994) 0 * Os_TE_115905 Os_TE_115905 Chr8 25473121 25473120 - HATOS1 3488 0.0007 (2/2996) 0 * Os_TE_115906 Os_TE_115886 Chr8 25459124 25459125 + MUDRN5_OS 374 0.0047 (14/2956) 0 * * Os_TE_115862 Chr8 25453818 25453819 - TELIA 141 0.0003 (1/2994) 0 * Os_TE_115861 Os_TE_115861 Chr8 25453810 25453809 + TELIA 141 0.0003 (1/2993) 0 * Os_TE_115862 Os_TE_115859 Chr8 25453521 25453520 + ORSgTEMT00600576 351 0.0193 (57/2950) 0 * * Os_TE_115803 Chr8 25425376 25425375 - RETROSAT4_LTR 13504 0.0064 (19/2985) 0 * * Os_TE_115778 Chr8 25413477 25413478 - ORSgTERT00201216 11284 0.0024 (7/2942) 0 * Os_TE_115777 Os_TE_115777 Chr8 25413473 25413472 - RIRE2_LTR 11306 0.0024 (7/2942) 0 * Os_TE_115778 Os_TE_115776 Chr8 25413171 25413170 + ORSgTEMT00501455 153 0.0222 (62/2794) 0 * * Os_TE_115772 Chr8 25412601 25412600 - ORSgTEMT01400014 209 0.0007 (2/2942) 0 * * Os_TE_115769 Chr8 25412253 25412254 - ORSgTEMT00700002 381 0.0030 (9/2957) 0 * * Os_TE_115761 Chr8 25410329 25410328 + ORSgTEMT00901844 250 0.0007 (2/2984) 0 * Os_TE_115760 Os_TE_115760 Chr8 25410325 25410326 - ORSgTEMT00900099 250 0.0007 (2/2984) 0 * Os_TE_115761 Os_TE_115759 Chr8 25405637 25405638 - STOWAWAY48_OS 261 0.0007 (2/2991) 0 * * Os_TE_115746 Chr8 25395970 25395971 - RIREX_LTR 8828 0.0054 (14/2612) 0 * * Os_TE_115734 Chr8 25386687 25386686 + ORSgTEMT01601525 239 0.0007 (2/2991) 0 * Os_TE_115733 Os_TE_115733 Chr8 25386684 25386685 - ORSgTEMT01602413 239 0.0007 (2/2992) 0 * Os_TE_115734 Os_TE_115711 Chr8 25383427 25383426 - ORSgTETNOOT00118 134 0.0007 (2/2990) 0 * Os_TE_115710 Os_TE_115710 Chr8 25383426 25383427 + ORSgTEMT00502094 140 0.0007 (2/2990) 0 * Os_TE_115711 Os_TE_115700 Chr8 25376455 25376456 - ORSgTEMT00501447 126 0.0007 (2/2995) 0 * * Os_TE_115692 Chr8 25368446 25368447 - ORSgTEMT01600639 228 0.0007 (2/2957) 0 * * Os_TE_115674 Chr8 25363861 25363862 + ORSgTETNOOT01834 251 0.0733 (218/2973) 0 * Os_TE_115673 Os_TE_115673 Chr8 25363859 25363858 + ORSgTETNOOT01998 254 0.0732 (218/2980) 0 * Os_TE_115674 Os_TE_115658 Chr8 25357373 25357374 + ORSgTETNOOT00707 140 0.0007 (2/2988) 0 * * Os_TE_115656 Chr8 25356505 25356506 - ORSiTERTOOT00250 3262 0.2666 (799/2997) 0 * * Os_TE_115642 Chr8 25351363 25351364 + ORSgTEMT00500095 150 0.0007 (2/2992) 0 * * Os_TE_115641 Chr8 25351244 25351245 - ORSgTEMT00500278 141 0.0007 (2/2988) 0 * Os_TE_115640 Os_TE_115640 Chr8 25351241 25351240 - ORSgTEMT00500675 140 0.0007 (2/2992) 0 * Os_TE_115641 Os_TE_115634 Chr8 25349714 25349715 + RETROSAT4_LTR 13504 0.0003 (1/2999) 0 * Os_TE_115633 Os_TE_115633 Chr8 25349710 25349709 - RETROSAT4_LTR 13504 0.0003 (1/2999) 0 * Os_TE_115634 Os_TE_115627 Chr8 25345913 25345914 + ORSiTERTOOT00296 5553 0.0003 (1/2998) 0 * * Os_TE_115625 Chr8 25345349 25345350 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_115624 Os_TE_115624 Chr8 25345345 25345344 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_115625 Os_TE_115578 Chr8 25332575 25332576 + OSTE30 529 0.0003 (1/2994) 0 * * Os_TE_115563 Chr8 25329812 25329813 + ORSgTEMT00600120 364 0.0010 (3/2981) 0 * Os_TE_115562 Os_TE_115562 Chr8 25329811 25329810 - CASTAWAY 364 0.0007 (2/2974) 0 * Os_TE_115563 Os_TE_115553 Chr8 25325652 25325653 - ORSgTEMT00501447 126 0.0010 (3/2978) 0 * * Os_TE_115544 Chr8 25320783 25320784 - INDITTO 263 0.0004 (1/2784) 0 * * Os_TE_115531 Chr8 25311479 25311480 - SZ-55_LTR 10318 0.0003 (1/2994) 0 * Os_TE_115530 Os_TE_115530 Chr8 25311475 25311474 + SZ-55_LTR 10318 0.0003 (1/2993) 0 * Os_TE_115531 Os_TE_115524 Chr8 25309627 25309626 - ORSgTEMT01601432 239 0.0007 (2/2998) 0 * * Os_TE_115506 Chr8 25304043 25304042 - ORSgTETN00200001 10994 0.0010 (3/2963) 0 * Os_TE_115505 Os_TE_115505 Chr8 25304042 25304043 + CACTA-B 1103 0.0014 (4/2954) 0 * Os_TE_115506 Os_TE_115504 Chr8 25303963 25303964 + ORSiTERTOOT00028 8600 0.0003 (1/2938) 0 * * Os_TE_115495 Chr8 25302618 25302619 - MuDR3_OS 8604 0.1268 (318/2507) 0 * Os_TE_115494 Os_TE_115494 Chr8 25302609 25302608 - MuDR3_OS 8604 0.0986 (240/2434) 0 * Os_TE_115495 Os_TE_115490 Chr8 25302360 25302361 - MuDR3_OS 8604 0.0501 (76/1516) -1 * * Os_TE_115415 Chr8 25282421 25282422 - OSTE33 1012 0.0941 (267/2837) 0 * Os_TE_115414 Os_TE_115414 Chr8 25282412 25282411 + OSTE33 1012 0.0987 (281/2847) 0 * Os_TE_115415 Os_TE_115409 Chr8 25281249 25281248 - HELITRON7_OS 10153 0.0020 (6/2998) 0 * Os_TE_115408 Os_TE_115408 Chr8 25281245 25281246 + HELITRON7_OS 10153 0.0020 (6/2996) 0 * Os_TE_115409 Os_TE_115407 Chr8 25280840 25280841 - ORSgTETN00200001 10994 0.0250 (75/2995) 0 * Os_TE_115406 Os_TE_115406 Chr8 25280838 25280837 + SPMLIKE 10989 0.0273 (82/2999) 0 * Os_TE_115407 Os_TE_115397 Chr8 25278864 25278865 + ORSgTETNOOT00221 261 0.0008 (2/2654) 0 * * Os_TE_115390 Chr8 25274029 25274030 + ORSiTERTOOT00296 5553 0.0003 (1/2990) 0 * Os_TE_115389 Os_TE_115389 Chr8 25274025 25274024 - SC-3_LTR 5748 0.0003 (1/2994) 0 * Os_TE_115390 Os_TE_115377 Chr8 25265463 25265464 - AMYLTP 383 0.0043 (12/2760) 0 * * Os_TE_115373 Chr8 25264623 25264622 - TNR2A 152 0.0014 (4/2891) 0 * * Os_TE_115356 Chr8 25260762 25262665 + SEVERIN-2 1952 0.8315 (2483/2986) 1 Intact * Os_TE_115346 Chr8 25258638 25258639 - SZ-35LTR 3853 0.0020 (6/2974) 0 * Os_TE_115345 Os_TE_115345 Chr8 25258634 25258633 + RETROSAT4_LTR 13504 0.0020 (6/2976) 0 * Os_TE_115346 Os_TE_115343 Chr8 25258546 25258545 - TELIA 141 0.0003 (1/2965) 0 * * Os_TE_115336 Chr8 25256561 25256562 - TELIA 141 0.0267 (79/2957) 0 * Os_TE_115335 Os_TE_115335 Chr8 25256553 25256552 + TELIA 141 0.0277 (82/2955) 0 * Os_TE_115336 Os_TE_115331 Chr8 25255341 25255342 + RETROSAT4_LTR 13504 0.0013 (4/2976) 0 * * Os_TE_115322 Chr8 25252818 25252819 - FOCUS 257 0.0007 (2/2955) 0 * * Os_TE_115320 Chr8 25251991 25251992 + ORSgTETNOOT01834 251 0.0003 (1/2949) 0 * * Os_TE_115318 Chr8 25250724 25250723 + GAIJIN 147 0.0003 (1/2993) 0 * * Os_TE_115281 Chr8 25240537 25240536 - ORSiTETNOOT00035 417 0.0020 (6/2990) 0 * * Os_TE_115279 Chr8 25240309 25240308 + MERMITE-18 1263 0.0003 (1/2969) 0 * * Os_TE_115212 Chr8 25225298 25225297 + INDITTO 263 0.0007 (2/2951) 0 * * Os_TE_115139 Chr8 25200362 25200361 - COPIA2-LTR_OS 6433 0.0354 (106/2995) 0 * * Os_TE_115074 Chr8 25163965 25163966 - ORSiTETNOOT00134 607 0.0007 (2/2958) 0 * * Os_TE_115072 Chr8 25163956 25163957 - RIRE2_LTR 11306 0.0003 (1/2918) 0 * * Os_TE_115062 Chr8 25163124 25163125 - INDITTO 263 0.0007 (2/2996) 0 * Os_TE_115061 Os_TE_115061 Chr8 25163122 25163121 - ORSgTETNOOT02417 265 0.0003 (1/2998) 0 * Os_TE_115062 Os_TE_115027 Chr8 25147694 25147695 - ORSgTEMT00501219 127 0.0007 (2/2979) 0 * * Os_TE_115026 Chr8 25147640 25147639 + CACTA-B 1103 0.0885 (264/2983) 0 * Os_TE_115025 Os_TE_115025 Chr8 25147639 25147640 - ORSgTETN00200001 10994 0.0830 (247/2975) 0 * Os_TE_115026 Os_TE_114998 Chr8 25130720 25130721 - OSTE24 683 0.0008 (2/2376) 0 * * Os_TE_114974 Chr8 25116586 25116587 + COPI2_LTR 4733 0.0003 (1/2930) 0 * Os_TE_114973 Os_TE_114973 Chr8 25116582 25116581 - COPI2_LTR 4733 0.0003 (1/2928) 0 * Os_TE_114974 Os_TE_114952 Chr8 25105896 25105895 + NDNA1TNA_OS 334 0.0007 (2/2992) 0 * * Os_TE_114927 Chr8 25099078 25099077 - INDITTO 263 0.0017 (5/2993) 0 * * Os_TE_114925 Chr8 25098911 25098912 - INDITTO 263 0.0018 (5/2773) 0 * Os_TE_114924 Os_TE_114924 Chr8 25098909 25098908 + INDITTO 263 0.0017 (5/2995) 0 * Os_TE_114925 Os_TE_114914 Chr8 25095868 25095867 + ORSgTEMT00901862 245 0.0007 (2/2942) 0 * * Os_TE_114913 Chr8 25095797 25095798 - INDITTO 263 0.0014 (4/2926) 0 * Os_TE_114912 Os_TE_114912 Chr8 25095795 25095794 + INDITTO 263 0.0014 (4/2911) 0 * Os_TE_114913 Os_TE_114886 Chr8 25089264 25088922 + NDNA2TNA_OS 346 0.7585 (2249/2965) 1 Intact * Os_TE_114873 Chr8 25087341 25087340 + STOWAWAY51_OS 246 0.0007 (2/2937) 0 * Os_TE_114872 Os_TE_114872 Chr8 25087335 25087336 - STOWAWAY51_OS 246 0.0007 (2/2916) 0 * Os_TE_114873 Os_TE_114868 Chr8 25086588 25086589 + RIREX_LTR 8828 0.0007 (2/2840) 0 * * Os_TE_114851 Chr8 25080489 25080490 - INDITTO 263 0.0007 (2/2985) 0 * * Os_TE_114837 Chr8 25079507 25079506 - STOWAWAY1_OS 149 0.0007 (2/2970) 0 * * Os_TE_114743 Chr8 25037473 25037474 + OSTE33 1012 0.0995 (296/2976) 0 * Os_TE_114742 Os_TE_114742 Chr8 25037464 25037463 + OSTE33 1012 0.0935 (278/2972) 0 * Os_TE_114743 Os_TE_114733 Chr8 25033644 25033645 - SETARIA1 1293 0.1015 (291/2867) 0 * * Os_TE_114720 Chr8 25031214 25027325 - RETROSAT4_LTR 13504 0.6387 (1899/2973) 1 Solo_LTR Os_TE_114713 Os_TE_114713 Chr8 25027325 25031214 + RETROSAT4_LTR 13504 0.6383 (1908/2989) 1 Solo_LTR Os_TE_114720 Os_TE_114692 Chr8 25020794 25020795 + ORSgTETNOOT01275 140 0.0007 (2/2977) 0 * Os_TE_114691 Os_TE_114691 Chr8 25020792 25020791 - ORSgTEMT00500278 141 0.0007 (2/2974) 0 * Os_TE_114692 Os_TE_114641 Chr8 24996859 24996858 - ORSgTERT00200842 1080 0.0027 (8/2950) 0 * * Os_TE_114632 Chr8 24992923 24992922 - ORSgTEMT01601208 238 0.0017 (5/2989) 0 * Os_TE_114631 Os_TE_114631 Chr8 24992920 24992921 - ORSgTEMT01600639 228 0.0017 (5/2990) 0 * Os_TE_114632 Os_TE_114626 Chr8 24990703 24990704 + NDNA1TNA_OS 334 0.1130 (276/2443) 0 * Os_TE_114625 Os_TE_114625 Chr8 24990701 24990700 - NDNA1TNA_OS 334 0.0871 (261/2996) 0 * Os_TE_114626 Os_TE_114614 Chr8 24983611 24983612 + F569 228 0.0021 (6/2798) 0 * Os_TE_114613 Os_TE_114613 Chr8 24983609 24983608 - F569 228 0.0021 (6/2857) 0 * Os_TE_114614 Os_TE_114612 Chr8 24982828 24982829 + RIREX_LTR 8828 0.0020 (6/2943) 0 * * Os_TE_114601 Chr8 24979344 24979345 - RIRE2_LTR 11306 0.0977 (290/2968) 0 * Os_TE_114600 Os_TE_114600 Chr8 24979340 24979339 - ORSgTERT00201216 11284 0.0979 (290/2963) 0 * Os_TE_114601 Os_TE_114599 Chr8 24979071 24979072 - GYPSY1-LTR_OS 8900 0.3501 (1043/2979) 0 * Os_TE_114598 Os_TE_114598 Chr8 24979067 24979066 + GYPSY1-LTR_OS 8900 0.3509 (1046/2981) 0 * Os_TE_114599 Os_TE_114596 Chr8 24978762 24978761 - NDNA2TNA_OS 346 0.1401 (419/2990) 0 * * Os_TE_114595 Chr8 24978498 24978499 - STOLAB 312 0.0007 (2/2981) 0 * Os_TE_114594 Os_TE_114594 Chr8 24978496 24978495 + STOLAB 312 0.0007 (2/2981) 0 * Os_TE_114595 Os_TE_114592 Chr8 24976663 24976664 + COPIA2-LTR_OS 6433 0.0007 (2/2970) 0 * Os_TE_114591 Os_TE_114591 Chr8 24976659 24976658 - COPIA2-LTR_OS 6433 0.0020 (6/2971) 0 * Os_TE_114592 Os_TE_114590 Chr8 24976234 24976235 - ORSgTEMT02400179 221 0.0004 (1/2661) 0 * * Os_TE_114568 Chr8 24968055 24968056 - SZ-55_LTR 10318 0.0010 (3/2965) 0 * Os_TE_114567 Os_TE_114567 Chr8 24968051 24968050 + SZ-55_LTR 10318 0.0010 (3/2968) 0 * Os_TE_114568 Os_TE_114555 Chr8 24960598 24960599 - SZ-22_LTR 4403 0.0014 (4/2957) 0 * Os_TE_114554 Os_TE_114554 Chr8 24960594 24960593 + ORSiTERTOOT00097 759 0.0014 (4/2956) 0 * Os_TE_114555 Os_TE_114546 Chr8 24958164 24958165 + ORSgTETNOOT00908 242 0.0094 (28/2989) 0 * * Os_TE_114542 Chr8 24957158 24957159 - ORSgTETNOOT02417 265 0.0003 (1/2995) 0 * Os_TE_114541 Os_TE_114541 Chr8 24957156 24957155 - INDITTO 263 0.0003 (1/2996) 0 * Os_TE_114542 Os_TE_114538 Chr8 24956359 24956360 + STOWAWAY15-2_OS 145 0.3322 (990/2980) 0 * * Os_TE_114533 Chr8 24953813 24953812 + COPI2_LTR 4733 0.0003 (1/2976) 0 * * Os_TE_114479 Chr8 24939928 24939927 + STOWAWAY15-2_OS 145 0.0007 (2/2995) 0 * * Os_TE_114477 Chr8 24939675 24939674 - STOWAWAY1_OS 149 0.0007 (2/2973) 0 * * Os_TE_114462 Chr8 24933337 24932800 + CLOUD-4 520 0.6953 (2079/2990) 1 Intact Os_TE_114460 Os_TE_114460 Chr8 24932800 24933337 + CLOUD-4 520 0.6967 (2083/2990) 1 Intact Os_TE_114462 Os_TE_114458 Chr8 24931121 24931120 - COPIA3-LTR_OS 5061 0.0003 (1/2976) 0 * * Os_TE_114455 Chr8 24929137 24929138 + ORSgTETNOOT00032 218 0.0020 (6/2984) 0 * * Os_TE_114438 Chr8 24916151 24916152 - RETRO2_LTR 12874 0.2721 (597/2194) 0 * * Os_TE_114425 Chr8 24914963 24914964 + ORSgTEMT00100272 356 0.0007 (2/2972) 0 * * Os_TE_114421 Chr8 24914418 24914212 + STOWAWAY21_OS 243 0.8807 (2576/2925) 1 Intact * Os_TE_114412 Chr8 24912750 24912751 + ENSPM4_OS 11610 0.0007 (2/2971) 0 * Os_TE_114411 Os_TE_114411 Chr8 24912747 24912746 - ENSPM4_OS 11610 0.0003 (1/2980) 0 * Os_TE_114412 Os_TE_114333 Chr8 24892144 24892143 - SC-8_LTR 4951 0.0003 (1/2997) 0 * * Os_TE_114319 Chr8 24880606 24880607 + OSMU5 4881 0.2704 (779/2881) 0 * * Os_TE_114288 Chr8 24869349 24869348 + EXPLORER 210 0.0020 (6/2991) 0 * * Os_TE_114284 Chr8 24865703 24865702 - ORSgTEMT00900965 216 0.2710 (789/2911) 0 * * Os_TE_114279 Chr8 24864725 24864724 + STOWAWAY51_OS 246 0.0733 (215/2932) 0 * Os_TE_114278 Os_TE_114278 Chr8 24864719 24864720 + ORSgTEMT01601591 242 0.0823 (242/2940) 0 * Os_TE_114279 Os_TE_114276 Chr8 24864468 24864319 - ORSgTEMT00501504 140 0.7543 (2241/2971) 1 Intact Os_TE_114275 Os_TE_114275 Chr8 24864313 24864461 + ORSgTEMT00502327 143 0.7525 (2217/2946) 1 Intact Os_TE_114276 Os_TE_114267 Chr8 24863878 24863879 - F524 291 0.2699 (795/2945) 0 * * Os_TE_114264 Chr8 24863319 24863318 + COPI2_LTR 4733 0.0003 (1/2932) 0 * * Os_TE_114262 Chr8 24862154 24861930 - ORSgTEMT01601111 238 0.6756 (1966/2910) 1 Intact Os_TE_114261 Os_TE_114261 Chr8 24861918 24862154 - ORSgTEMT01600639 228 0.6668 (1891/2836) 1 Intact Os_TE_114262 Os_TE_114232 Chr8 24852094 24852095 + ORSgTEMT01601591 242 0.0003 (1/2977) 0 * * Os_TE_114225 Chr8 24848769 24848770 - ORSgTEMT01400006 213 0.0014 (4/2908) 0 * * Os_TE_114208 Chr8 24844538 24844539 + STOWAWAY43_OS 233 0.3564 (1061/2977) 0 * * Os_TE_114201 Chr8 24839997 24839998 + ORSiTERTOOT00381 4988 0.0003 (1/2992) 0 * Os_TE_114200 Os_TE_114200 Chr8 24839993 24839992 - SC-8_LTR 4951 0.0003 (1/2994) 0 * Os_TE_114201 Os_TE_114175 Chr8 24832252 24832253 - ORSgTEMT00600085 364 0.0030 (9/2967) 0 * Os_TE_114174 Os_TE_114174 Chr8 24832250 24832249 + CASTAWAY 364 0.0034 (10/2975) 0 * Os_TE_114175 Os_TE_114172 Chr8 24830428 24830429 + MPING 430 0.0023 (7/2989) 0 * Os_TE_114171 Os_TE_114171 Chr8 24830426 24830425 - MPING 430 0.0023 (7/2991) 0 * Os_TE_114172 Os_TE_114164 Chr8 24827305 24827306 + TRUNCATOR2_LTR 2904 0.0267 (80/2997) 0 * * Os_TE_114160 Chr8 24826352 24826353 - OSLINE1-4 4779 0.0013 (4/2967) 0 * * Os_TE_114159 Chr8 24826210 24826211 - RETROSAT2LTR 12796 0.0857 (255/2975) 0 * Os_TE_114158 Os_TE_114158 Chr8 24826208 24826207 + RETROSAT2LTR 12796 0.0776 (229/2952) 0 * Os_TE_114159 Os_TE_114156 Chr8 24824359 24824360 + TWIF 586 0.0812 (242/2982) 0 * Os_TE_114155 Os_TE_114155 Chr8 24824352 24824351 - ORSiTETNOOT00199 3501 0.0788 (235/2984) 0 * Os_TE_114156 Os_TE_114139 Chr8 24815284 24815283 + SZ-40LTR 2465 0.1091 (327/2997) 0 * * Os_TE_114132 Chr8 24810784 24810783 + COPI2_LTR 4733 0.0003 (1/2994) 0 * * Os_TE_114110 Chr8 24797652 24797653 - AMYLTP 383 0.0141 (42/2975) 0 * Os_TE_114109 Os_TE_114109 Chr8 24797644 24797643 + AMYLTP 383 0.0134 (40/2975) 0 * Os_TE_114110 Os_TE_114108 Chr8 24797358 24797359 + ORSiTERTOOT00226 792 0.0003 (1/2982) 0 * Os_TE_114107 Os_TE_114107 Chr8 24797354 24797353 - SZ-22_LTR 4403 0.0003 (1/2988) 0 * Os_TE_114108 Os_TE_114105 Chr8 24796695 24796501 - ORSgTEMT02000040 196 0.8826 (2632/2982) 1 Intact * Os_TE_114100 Chr8 24795162 24795163 - TELIA 141 0.0040 (12/2989) 0 * Os_TE_114099 Os_TE_114099 Chr8 24795154 24795153 + TELIA 141 0.0040 (12/2991) 0 * Os_TE_114100 Os_TE_114087 Chr8 24790486 24790487 + OSTE33 1012 0.0756 (223/2948) 0 * Os_TE_114086 Os_TE_114086 Chr8 24790477 24790476 + OSTE33 1012 0.0818 (242/2960) 0 * Os_TE_114087 Os_TE_114075 Chr8 24782606 24782607 - MPING 430 0.0003 (1/2966) 0 * Os_TE_114074 Os_TE_114074 Chr8 24782604 24782603 + MPING 430 0.0003 (1/2959) 0 * Os_TE_114075 Os_TE_114056 Chr8 24778922 24778921 - TRUNCATOR 2918 0.0140 (42/2994) 0 * Os_TE_114055 Os_TE_114055 Chr8 24778921 24778922 + TRUNCATOR 2918 0.0147 (44/2996) 0 * Os_TE_114056 Os_TE_114054 Chr8 24778532 24778533 - TRUNCATOR2_LTR 2904 0.0851 (255/2995) 0 * Os_TE_114053 Os_TE_114053 Chr8 24778528 24778527 + ORSiCMCM00100019 2717 0.0825 (247/2993) 0 * Os_TE_114054 Os_TE_114045 Chr8 24772302 24772301 + ORSgTEMT01601122 212 0.0020 (6/2985) 0 * Os_TE_114044 Os_TE_114044 Chr8 24772301 24772302 + STOWAWAY21_OS 243 0.0013 (4/2977) 0 * Os_TE_114045 Os_TE_114037 Chr8 24767527 24767526 - ORSiTEMT02200001 210 0.0017 (5/2992) 0 * * Os_TE_113993 Chr8 24755614 24755615 + ORSgTEMT01601591 242 0.0010 (3/2962) 0 * * Os_TE_113979 Chr8 24751491 24751492 - MPING 430 0.0003 (1/2912) 0 * * Os_TE_113952 Chr8 24739409 24739069 - OLO24 345 0.7725 (2292/2967) 1 Intact * Os_TE_113945 Chr8 24738888 24738889 - ORSgTEMT01600662 238 0.0111 (33/2965) 0 * Os_TE_113944 Os_TE_113944 Chr8 24738885 24738884 - ORSgTEMT01600520 239 0.0111 (33/2966) 0 * Os_TE_113945 Os_TE_113942 Chr8 24738801 24738802 + ORSgTEMT01601934 207 0.1239 (367/2963) 0 * * Os_TE_113915 Chr8 24725698 24725697 + COWARD-3 221 0.0017 (5/2980) 0 * * Os_TE_113888 Chr8 24719159 24719160 - TELIA 141 0.0003 (1/2994) 0 * Os_TE_113887 Os_TE_113887 Chr8 24719151 24719150 + TELIA 141 0.0003 (1/2995) 0 * Os_TE_113888 Os_TE_113870 Chr8 24709878 24709877 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * * Os_TE_113851 Chr8 24697092 24697093 + AMYLTP 383 0.0187 (56/2992) 0 * Os_TE_113850 Os_TE_113850 Chr8 24697084 24697083 - AMYLTP 383 0.0187 (56/2993) 0 * Os_TE_113851 Os_TE_113846 Chr8 24695150 24695149 - TNR2A 152 0.0511 (119/2328) 0 * * Os_TE_113832 Chr8 24677344 24677343 - STOWAWAY44_OS 240 0.0003 (1/2898) 0 * Os_TE_113831 Os_TE_113831 Chr8 24677341 24677342 + STOWAWAY44_OS 240 0.0003 (1/2908) 0 * Os_TE_113832 Os_TE_113827 Chr8 24673117 24673118 - ORSiTETNOOT00134 607 0.0003 (1/2991) 0 * * Os_TE_113808 Chr8 24658175 24658176 - COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_113807 Os_TE_113807 Chr8 24658171 24658170 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_113808 Os_TE_113806 Chr8 24657170 24657171 - RETROSAT5_LTR 13878 0.0023 (7/2990) 0 * Os_TE_113805 Os_TE_113805 Chr8 24657166 24657165 + SZ-67LTR 1540 0.0023 (7/2991) 0 * Os_TE_113806 Os_TE_113803 Chr8 24656806 24656805 - TRUNCATOR2_LTR 2904 0.0023 (7/2989) 0 * * Os_TE_113801 Chr8 24656789 24656788 - ORSgTEMT02400179 221 0.0003 (1/2984) 0 * * Os_TE_113798 Chr8 24656088 24656089 - ORSiTEMT01300001 950 0.0003 (1/2988) 0 * * Os_TE_113796 Chr8 24654696 24654697 + LTR10_OS 202 0.0017 (5/2921) 0 * * Os_TE_113792 Chr8 24654563 24654564 + OSTE9 421 0.0007 (2/2984) 0 * * Os_TE_113763 Chr8 24641993 24641994 - TELIA 141 0.0003 (1/2995) 0 * Os_TE_113762 Os_TE_113762 Chr8 24641985 24641984 + TELIA 141 0.0003 (1/2996) 0 * Os_TE_113763 Os_TE_113751 Chr8 24631476 24631477 - SZ-55_LTR 10318 0.0003 (1/2969) 0 * Os_TE_113750 Os_TE_113750 Chr8 24631472 24631471 + SZ-55_LTR 10318 0.0003 (1/2973) 0 * Os_TE_113751 Os_TE_113732 Chr8 24628633 24628632 + STOWAWAY44_OS 240 0.0027 (8/2960) 0 * Os_TE_113731 Os_TE_113731 Chr8 24628630 24628631 - STOWAWAY44_OS 240 0.0024 (7/2968) 0 * Os_TE_113732 Os_TE_113730 Chr8 24628566 24628565 + STOWAWAY51_OS 246 0.0013 (4/2980) 0 * * Os_TE_113721 Chr8 24625308 24625309 + HARB-1_OS 5166 0.0003 (1/2985) 0 * Os_TE_113720 Os_TE_113720 Chr8 24625306 24625305 - HARB-1_OS 5166 0.0003 (1/2966) 0 * Os_TE_113721 Os_TE_113718 Chr8 24622996 24622997 - MPING 430 0.0017 (5/2976) 0 * Os_TE_113717 Os_TE_113717 Chr8 24622994 24622993 + MPING 430 0.0017 (5/2984) 0 * Os_TE_113718 Os_TE_113712 Chr8 24620123 24620122 - TRUNCATOR 2918 0.0084 (25/2983) 0 * * Os_TE_113700 Chr8 24616261 24616260 + MUDRN2_OS 756 0.0013 (4/2980) 0 * * Os_TE_113653 Chr8 24590103 24590102 + ORSgTEMT01601591 242 0.0004 (1/2814) 0 * * Os_TE_113640 Chr8 24586038 24586039 - DS-RICE2N 613 0.0007 (2/2995) 0 * Os_TE_113639 Os_TE_113639 Chr8 24586031 24586030 + DS-RICE4N 715 0.0007 (2/2993) 0 * Os_TE_113640 Os_TE_113611 Chr8 24571567 24571566 - ORSiTERTOOT00116 720 0.0003 (1/2959) 0 * * Os_TE_113571 Chr8 24554469 24554470 + AMYLTP 383 0.0020 (6/2989) 0 * Os_TE_113570 Os_TE_113570 Chr8 24554461 24554460 - AMYLTP 383 0.0020 (6/2989) 0 * Os_TE_113571 Os_TE_113556 Chr8 24552251 24552252 + MPING 430 0.0003 (1/2986) 0 * Os_TE_113555 Os_TE_113555 Chr8 24552249 24552248 - MPING 430 0.0003 (1/2987) 0 * Os_TE_113556 Os_TE_113553 Chr8 24547515 24547516 + RIREX_LTR 8828 0.0013 (4/2999) 0 * Os_TE_113552 Os_TE_113552 Chr8 24547511 24547510 - RIREX_LTR 8828 0.0013 (4/2997) 0 * Os_TE_113553 Os_TE_113531 Chr8 24545445 24545446 + OSCOPIA1_LTR 4754 0.0014 (4/2961) 0 * * Os_TE_113517 Chr8 24542888 24542887 - RETROSAT3_LTR 11537 0.0003 (1/2998) 0 * * Os_TE_113482 Chr8 24522442 24522441 + COPIA2-LTR_OS 6433 0.0020 (6/2996) 0 * * Os_TE_113437 Chr8 24499809 24499808 + RIRE7_LTR 7615 0.0010 (3/2995) 0 * * Os_TE_113423 Chr8 24497059 24497060 - SC-8_LTR 4951 0.0003 (1/2996) 0 * Os_TE_113422 Os_TE_113422 Chr8 24497055 24497054 + ORSiTERTOOT00381 4988 0.0003 (1/2995) 0 * Os_TE_113423 Os_TE_113406 Chr8 24490793 24490792 + ORSgTEMT02400034 225 0.0098 (29/2972) 0 * Os_TE_113405 Os_TE_113405 Chr8 24490790 24490791 - ORSgTEMT02400179 221 0.0094 (28/2980) 0 * Os_TE_113406 Os_TE_113404 Chr8 24490738 24490739 - RETROSAT3_LTR 11537 0.0007 (2/2987) 0 * Os_TE_113403 Os_TE_113403 Chr8 24490734 24490733 + RETROSAT2LTRA 3112 0.0007 (2/2990) 0 * Os_TE_113404 Os_TE_113394 Chr8 24482779 24482780 - COPIA2-LTR_OS 6433 0.0030 (9/2995) 0 * Os_TE_113393 Os_TE_113393 Chr8 24482775 24482774 + COPIA2-LTR_OS 6433 0.0030 (9/2992) 0 * Os_TE_113394 Os_TE_113381 Chr8 24477079 24477080 + ORSiTERTOOT00296 5553 0.0003 (1/2996) 0 * Os_TE_113380 Os_TE_113380 Chr8 24477075 24477074 - SC-3_LTR 5748 0.0003 (1/2993) 0 * Os_TE_113381 Os_TE_113353 Chr8 24456712 24456713 - ORSgTEMT02400179 221 0.0057 (17/2997) 0 * * Os_TE_113324 Chr8 24448943 24448944 - RIRE2_LTR 11306 0.0090 (27/2994) 0 * Os_TE_113323 Os_TE_113323 Chr8 24448939 24448938 + RIRE2_LTR 11306 0.0087 (26/2995) 0 * Os_TE_113324 Os_TE_113304 Chr8 24442476 24442475 + ORSiCMCM00100019 2717 0.0057 (17/2993) 0 * * Os_TE_113301 Chr8 24441643 24441642 - COPIA2-LTR_OS 6433 0.0033 (10/2989) 0 * * Os_TE_113292 Chr8 24437384 24437385 + TELIA 141 0.0030 (9/2968) 0 * Os_TE_113291 Os_TE_113291 Chr8 24437376 24437375 - TELIA 141 0.0027 (8/2968) 0 * Os_TE_113292 Os_TE_113229 Chr8 24407703 24407704 - MERMITEA 1710 0.0021 (6/2926) 0 * Os_TE_113228 Os_TE_113228 Chr8 24407695 24407694 + MERMITEJ 1498 0.0021 (6/2923) 0 * Os_TE_113229 Os_TE_113222 Chr8 24406465 24406464 + COWARD 200 0.0014 (4/2934) 0 * * Os_TE_113216 Chr8 24400581 24400582 - SC-3_LTR 5748 0.0003 (1/2994) 0 * Os_TE_113215 Os_TE_113215 Chr8 24400577 24400576 + ORSiTERTOOT00296 5553 0.0007 (2/2994) 0 * Os_TE_113216 Os_TE_113205 Chr8 24378385 24378386 - COPIA2-LTR_OS 6433 0.0033 (10/2989) 0 * Os_TE_113204 Os_TE_113204 Chr8 24378381 24378380 + COPIA2-LTR_OS 6433 0.0033 (10/2988) 0 * Os_TE_113205 Os_TE_113169 Chr8 24356088 24356089 - Cassandra_OS-LTR 764 0.0017 (5/2930) 0 * Os_TE_113168 Os_TE_113168 Chr8 24356084 24356083 - RIRE3A_LTR 10580 0.0017 (5/2939) 0 * Os_TE_113169 Os_TE_113162 Chr8 24354401 24354402 + RETRO2A_LTR 12895 0.0007 (2/2998) 0 * Os_TE_113161 Os_TE_113161 Chr8 24354397 24354396 - RETRO1_LTR 8314 0.0007 (2/2999) 0 * Os_TE_113162 Os_TE_113138 Chr8 24348376 24348377 + MPING 430 0.0003 (1/2967) 0 * * Os_TE_113123 Chr8 24342651 24342650 - DS-RICE2N 613 0.0409 (114/2787) 0 * * Os_TE_113115 Chr8 24340186 24340187 - COPIA2-LTR_OS 6433 0.0003 (1/2983) 0 * Os_TE_113114 Os_TE_113114 Chr8 24340182 24340181 + COPIA2-LTR_OS 6433 0.0003 (1/2981) 0 * Os_TE_113115 Os_TE_113113 Chr8 24339646 24339645 - COPIA2-LTR_OS 6433 0.0003 (1/2961) 0 * * Os_TE_113106 Chr8 24338634 24338635 + COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_113105 Os_TE_113105 Chr8 24338630 24338629 - COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_113106 Os_TE_113065 Chr8 24322762 24322761 + RIREX_LTR 8828 0.0003 (1/2889) 0 * * Os_TE_113059 Chr8 24322300 24322301 - ORSgTEMT00600085 364 0.0007 (2/2956) 0 * Os_TE_113058 Os_TE_113058 Chr8 24322299 24322298 + CASTAWAY 364 0.0007 (2/2956) 0 * Os_TE_113059 Os_TE_113000 Chr8 24297645 24297644 + ORSgTETNOOT01834 251 0.0003 (1/2870) 0 * * Os_TE_112933 Chr8 24276055 24276056 - SC-3_LTR 5748 0.0003 (1/2996) 0 * Os_TE_112932 Os_TE_112932 Chr8 24276051 24276050 + ORSiTERTOOT00296 5553 0.0003 (1/2997) 0 * Os_TE_112933 Os_TE_112930 Chr8 24274013 24274014 + STOWAWAY44_OS 240 0.0003 (1/2993) 0 * * Os_TE_112910 Chr8 24268678 24268677 - SC-3_LTR 5748 0.0003 (1/2993) 0 * * Os_TE_112885 Chr8 24254479 24254480 - MPING 430 0.0013 (4/2989) 0 * * Os_TE_112880 Chr8 24250853 24250854 + COPIA2-LTR_OS 6433 0.0013 (4/2998) 0 * Os_TE_112879 Os_TE_112879 Chr8 24250849 24250848 - COPIA2-LTR_OS 6433 0.0013 (4/2997) 0 * Os_TE_112880 Os_TE_112875 Chr8 24249200 24249201 + GYPSY-A_LTR 8951 0.0003 (1/2955) 0 * * Os_TE_112868 Chr8 24247983 24247982 + ORSgTERTOOT00009 12852 0.0003 (1/2941) 0 * * Os_TE_112856 Chr8 24243573 24243572 + ORSgTETNOOT00908 242 0.0003 (1/2979) 0 * * Os_TE_112826 Chr8 24234905 24234904 + ORSgTEMT01601591 242 0.0012 (3/2417) 0 * * Os_TE_112791 Chr8 24221966 24221965 - STOWAWAY51_OS 246 0.0003 (1/2990) 0 * Os_TE_112790 Os_TE_112790 Chr8 24221963 24221964 - STOWAWAY51_OS 246 0.0003 (1/2991) 0 * Os_TE_112791 Os_TE_112755 Chr8 24214211 24214212 - HARB-1_OS 5166 0.0003 (1/2989) 0 * Os_TE_112754 Os_TE_112754 Chr8 24214209 24214208 + HARB-1_OS 5166 0.0003 (1/2990) 0 * Os_TE_112755 Os_TE_112748 Chr8 24212881 24212882 - SUSU 279 0.0020 (6/2985) 0 * * Os_TE_112696 Chr8 24178075 24178301 + DITTO-2 235 0.8995 (2694/2995) 1 Intact * Os_TE_112645 Chr8 24165403 24165402 - TEMPINDAS 4259 0.1012 (295/2915) 0 * * Os_TE_112634 Chr8 24161120 24161121 + ORSgTETNOOT00032 218 0.0022 (6/2688) 0 * * Os_TE_112616 Chr8 24156285 24156286 + OSTE14 885 0.0030 (9/2982) 0 * * Os_TE_112611 Chr8 24155357 24155356 - SZ-37_LTR 12001 0.0615 (174/2828) 0 * * Os_TE_112581 Chr8 24146269 24149480 + HELITRON7_OS 10153 0.8973 (2595/2892) 1 Intact * Os_TE_112539 Chr8 24139868 24139867 + ORSgTEMT00900266 245 0.1051 (314/2987) 0 * * Os_TE_112528 Chr8 24137095 24139333 - MERMITEB 1610 0.8978 (2608/2905) 1 Intact * Os_TE_112477 Chr8 24105215 24105214 - RETROSAT5_LTR 13878 0.1114 (334/2997) 0 * * Os_TE_112357 Chr8 24063170 24063169 - TELIA 141 0.0003 (1/2975) 0 * * Os_TE_112350 Chr8 24062614 24062613 - HARB-1_OS 5166 0.0027 (8/2992) 0 * * Os_TE_112331 Chr8 24057254 24057253 + ORSgTEMT01601591 242 0.0003 (1/2987) 0 * Os_TE_112330 Os_TE_112330 Chr8 24057248 24057249 + STOWAWAY51_OS 246 0.0003 (1/2991) 0 * Os_TE_112331 Os_TE_112317 Chr8 24049961 24049962 + RETROSAT2LTR 12796 0.0003 (1/2977) 0 * * Os_TE_112288 Chr8 24044344 24044343 - SZ-25LTR 330 0.0010 (3/2995) 0 * * Os_TE_112283 Chr8 24041947 24041946 - ORSgTETNOOT02565 240 0.0003 (1/2974) 0 * * Os_TE_112281 Chr8 24041377 24041378 - SC-3_LTR 5748 0.0007 (2/2990) 0 * Os_TE_112280 Os_TE_112280 Chr8 24041373 24041372 + ORSiTERTOOT00296 5553 0.0007 (2/2988) 0 * Os_TE_112281 Os_TE_112270 Chr8 24029902 24029903 + RIREX_LTR 8828 0.0043 (13/2990) 0 * Os_TE_112269 Os_TE_112269 Chr8 24029898 24029897 - RIREX_LTR 8828 0.0040 (12/2988) 0 * Os_TE_112270 Os_TE_112257 Chr8 24027415 24027414 - COPIA2-LTR_OS 6433 0.0004 (1/2737) 0 * * Os_TE_112236 Chr8 24014221 24014222 - RETROSAT2LTR 12796 0.0004 (1/2273) 0 * * Os_TE_112228 Chr8 24010551 24010552 + OLO24B 335 0.0003 (1/2875) 0 * * Os_TE_112163 Chr8 23982428 23982427 - STOWAWAY51_OS 246 0.0003 (1/2997) 0 * Os_TE_112162 Os_TE_112162 Chr8 23982422 23982423 + STOWAWAY51_OS 246 0.0003 (1/2997) 0 * Os_TE_112163 Os_TE_112161 Chr8 23982310 23982311 - RIREX_LTR 8828 0.0007 (2/2997) 0 * Os_TE_112160 Os_TE_112160 Chr8 23982306 23982305 + RIREX_LTR 8828 0.0007 (2/2998) 0 * Os_TE_112161 Os_TE_112151 Chr8 23975419 23975418 - RETRO2_LTR 12874 0.0155 (46/2973) 0 * * Os_TE_112129 Chr8 23969438 23969439 - F569 228 0.0003 (1/2962) 0 * Os_TE_112128 Os_TE_112128 Chr8 23969436 23969435 + F569 228 0.0003 (1/2956) 0 * Os_TE_112129 Os_TE_112108 Chr8 23967704 23967703 + RIREX_LTR 8828 0.0007 (2/2975) 0 * * Os_TE_112082 Chr8 23960053 23960054 - SC-3_LTR 5748 0.0003 (1/2987) 0 * Os_TE_112081 Os_TE_112081 Chr8 23960049 23960048 + ORSiTERTOOT00296 5553 0.0003 (1/2989) 0 * Os_TE_112082 Os_TE_112079 Chr8 23959606 23959605 + ORSiTERTOOT00296 5553 0.0003 (1/2989) 0 * * Os_TE_112053 Chr8 23951506 23951507 + TWIF 586 0.0005 (1/1824) 0 * * Os_TE_112029 Chr8 23941149 23941148 + TELIA 141 0.0003 (1/2990) 0 * * Os_TE_112011 Chr8 23933745 23933746 + ORSiTERTOOT00296 5553 0.0003 (1/2997) 0 * Os_TE_112010 Os_TE_112010 Chr8 23933741 23933740 - SC-3_LTR 5748 0.0003 (1/2996) 0 * Os_TE_112011 Os_TE_111998 Chr8 23923391 23923392 + ORSgTETNOOT00908 242 0.0003 (1/2946) 0 * Os_TE_111997 Os_TE_111997 Chr8 23923385 23923384 + ORSgTETNOOT01219 231 0.0003 (1/2944) 0 * Os_TE_111998 Os_TE_111945 Chr8 23895299 23895298 + ORSgTEMT00600272 361 0.0003 (1/2951) 0 * * Os_TE_111944 Chr8 23895261 23895260 + STOWAWAY51_OS 246 0.0003 (1/2991) 0 * * Os_TE_111933 Chr8 23889442 23889443 + ORSiTERT00200145 12238 0.0020 (6/2972) 0 * Os_TE_111932 Os_TE_111932 Chr8 23889438 23889437 - SZ-67LTR 1540 0.0020 (6/2971) 0 * Os_TE_111933 Os_TE_111855 Chr8 23863130 23863131 - ORSgTEMT00600085 364 0.0013 (4/2989) 0 * Os_TE_111854 Os_TE_111854 Chr8 23863128 23863127 + CASTAWAY 364 0.0010 (3/2978) 0 * Os_TE_111855 Os_TE_111851 Chr8 23861816 23861817 - STOWAWAY51_OS 246 0.0003 (1/2998) 0 * * Os_TE_111848 Chr8 23859407 23859408 + COPIA2-LTR_OS 6433 0.0003 (1/2954) 0 * Os_TE_111847 Os_TE_111847 Chr8 23859403 23859402 - COPIA2-LTR_OS 6433 0.0003 (1/2954) 0 * Os_TE_111848 Os_TE_111845 Chr8 23857191 23857192 - STOWAWAY51_OS 246 0.0115 (34/2949) 0 * * Os_TE_111843 Chr8 23856933 23856932 - INDITTO 263 0.0003 (1/2977) 0 * * Os_TE_111810 Chr8 23846741 23846742 + ORSgTEMT05000092 279 0.0017 (5/2975) 0 * Os_TE_111809 Os_TE_111809 Chr8 23846739 23846738 - SUSU 279 0.0017 (5/2979) 0 * Os_TE_111810 Os_TE_111790 Chr8 23838638 23838639 - SC-3_LTR 5748 0.0003 (1/2917) 0 * Os_TE_111789 Os_TE_111789 Chr8 23838634 23838633 + ORSiTERTOOT00296 5553 0.0003 (1/2917) 0 * Os_TE_111790 Os_TE_111766 Chr8 23820954 23820953 + ORSgTEMT01601591 242 0.0003 (1/2992) 0 * Os_TE_111765 Os_TE_111765 Chr8 23820948 23820949 + STOWAWAY51_OS 246 0.0003 (1/2995) 0 * Os_TE_111766 Os_TE_111762 Chr8 23818752 23818753 + HARB-1_OS 5166 0.0020 (6/2979) 0 * Os_TE_111761 Os_TE_111761 Chr8 23818750 23818749 - HARB-1_OS 5166 0.0023 (6/2644) 0 * Os_TE_111762 Os_TE_111734 Chr8 23808095 23808096 + TWIF 586 0.0003 (1/2999) 0 * * Os_TE_111589 Chr8 23734822 23734821 + COPI2_LTR 4733 0.0003 (1/2990) 0 * * Os_TE_111513 Chr8 23705387 23705388 + RIREX_LTR 8828 0.0007 (2/2934) 0 * Os_TE_111512 Os_TE_111512 Chr8 23705383 23705382 - RIREX_LTR 8828 0.0007 (2/2934) 0 * Os_TE_111513 Os_TE_111487 Chr8 23703439 23703440 + MPING 430 0.0003 (1/2994) 0 * Os_TE_111486 Os_TE_111486 Chr8 23703437 23703436 - MPING 430 0.0003 (1/2991) 0 * Os_TE_111487 Os_TE_111416 Chr8 23686941 23686940 - COPIA2-LTR_OS 6433 0.0124 (37/2989) 0 * * Os_TE_111400 Chr8 23684546 23684547 + INDITTO 263 0.0010 (3/2976) 0 * Os_TE_111399 Os_TE_111399 Chr8 23684544 23684543 - INDITTO 263 0.0007 (2/2961) 0 * Os_TE_111400 Os_TE_111335 Chr8 23662895 23662894 - COPI2_LTR 4733 0.0004 (1/2834) 0 * * Os_TE_111331 Chr8 23660760 23660761 + COPI2_LTR 4733 0.0007 (2/2980) 0 * * Os_TE_111328 Chr8 23657751 23657752 - COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_111327 Os_TE_111327 Chr8 23657747 23657746 - COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_111328 Os_TE_111312 Chr8 23650968 23650969 + HARB-1_OS 5166 0.0024 (7/2976) 0 * Os_TE_111311 Os_TE_111311 Chr8 23650966 23650965 - HARB-1_OS 5166 0.0024 (7/2969) 0 * Os_TE_111312 Os_TE_111308 Chr8 23647492 23647493 + RETRO2_LTR 12874 0.6902 (2061/2986) 0 * Os_TE_111307 Os_TE_111307 Chr8 23647488 23647487 - RETRO2_LTR 12874 0.6874 (2041/2969) 0 * Os_TE_111308 Os_TE_111273 Chr8 23631309 23631069 + ORSiTEMT01000008 242 0.3151 (942/2990) 1 Intact Os_TE_111272 Os_TE_111272 Chr8 23631069 23631309 - ORSiTEMT01000008 242 0.3193 (956/2994) 1 Intact Os_TE_111273 Os_TE_111259 Chr8 23627015 23627014 - SZ-54_LTR 5203 0.1012 (302/2985) 0 * * Os_TE_111253 Chr8 23620644 23620645 + ORSgTEMT00900648 236 0.0013 (4/2992) 0 * * Os_TE_111214 Chr8 23606975 23606976 - MPING 430 0.0003 (1/2992) 0 * Os_TE_111213 Os_TE_111213 Chr8 23606973 23606972 + MPING 430 0.0003 (1/2992) 0 * Os_TE_111214 Os_TE_111212 Chr8 23605442 23605443 - SZ-22_LTR 4403 0.0003 (1/2991) 0 * * Os_TE_111200 Chr8 23602748 23602749 - COPIA2-LTR_OS 6433 0.0003 (1/2979) 0 * Os_TE_111199 Os_TE_111199 Chr8 23602744 23602743 + COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_111200 Os_TE_111198 Chr8 23602734 23602735 + ORSgTEMT00500476 150 0.6900 (2048/2968) 0 * * Os_TE_111186 Chr8 23591188 23591187 - CASTAWAY 364 0.0003 (1/2984) 0 * * Os_TE_111185 Chr8 23589708 23589709 - COPIA2-LTR_OS 6433 0.0004 (1/2845) 0 * * Os_TE_111167 Chr8 23585362 23585363 + MPING 430 0.0007 (2/2964) 0 * Os_TE_111166 Os_TE_111166 Chr8 23585360 23585359 - MPING 430 0.0007 (2/2959) 0 * Os_TE_111167 Os_TE_111160 Chr8 23583620 23583621 - RETROFIT2_LTR 4774 0.0007 (2/2995) 0 * Os_TE_111159 Os_TE_111159 Chr8 23583616 23583615 + RETROFIT2_LTR 4774 0.0007 (2/2996) 0 * Os_TE_111160 Os_TE_111043 Chr8 23548381 23548382 - ORSiTERTOOT00367 5639 0.0003 (1/2957) 0 * * Os_TE_111029 Chr8 23543687 23543688 + ORSiTERTOOT00074 4935 0.0003 (1/2985) 0 * Os_TE_111028 Os_TE_111028 Chr8 23543683 23543682 - ORSiTERTOOT00074 4935 0.0003 (1/2981) 0 * Os_TE_111029 Os_TE_110994 Chr8 23532050 23532051 - COPIA2-LTR_OS 6433 0.0007 (2/2994) 0 * Os_TE_110993 Os_TE_110993 Chr8 23532046 23532045 + COPIA2-LTR_OS 6433 0.0007 (2/2990) 0 * Os_TE_110994 Os_TE_110952 Chr8 23506771 23524709 + RETROSAT4_LTR 13504 0.8651 (2444/2825) 1 Intact * Os_TE_110947 Chr8 23505863 23505862 - ORSgTETNOOT02245 144 0.1489 (443/2975) 0 * Os_TE_110946 Os_TE_110946 Chr8 23505862 23505863 + ORSgTEMT00500201 140 0.1458 (433/2970) 0 * Os_TE_110947 Os_TE_110945 Chr8 23505807 23505806 + ORSgTEMT01602051 240 0.1426 (422/2960) 0 * * Os_TE_110933 Chr8 23495241 23495240 + DITTO-2 235 0.7100 (2086/2938) 0 * Os_TE_110932 Os_TE_110932 Chr8 23495233 23495234 - ORSgTEMT00900790 250 0.7158 (2106/2942) 0 * Os_TE_110933 Os_TE_110927 Chr8 23492976 23492775 - COWARD 200 0.7282 (903/1240) 1 Intact * Os_TE_110915 Chr8 23490469 23490470 - RETROSAT5_LTR 13878 0.0044 (4/917) 0 * * Os_TE_110909 Chr8 23488306 23488307 - Cassandra_OS-LTR 764 0.0043 (4/941) 0 * * Os_TE_110902 Chr8 23479622 23479621 - ORSiTERTOOT00183 3603 0.0007 (2/2973) 0 * * Os_TE_110901 Chr8 23478141 23478142 + GYPSY-A_LTR 8951 0.0003 (1/2966) 0 * Os_TE_110900 Os_TE_110900 Chr8 23478137 23478136 - GYPSY-A_LTR 8951 0.0003 (1/2970) 0 * Os_TE_110901 Os_TE_110893 Chr8 23476976 23476975 + WUWU 113 0.0054 (16/2951) 0 * * Os_TE_110871 Chr8 23463584 23459725 - JOUZHEN 596 0.3156 (897/2842) 1 Intact * Os_TE_110848 Chr8 23455607 23455606 - ORSgTEMT02400179 221 0.0003 (1/2959) 0 * * Os_TE_110841 Chr8 23454409 23454410 + OSTE9 421 0.0003 (1/2993) 0 * * Os_TE_110829 Chr8 23450042 23450043 - AMYLTP 383 0.5303 (1574/2968) 0 * Os_TE_110828 Os_TE_110828 Chr8 23450034 23450033 + AMYLTP 383 0.5162 (1495/2896) 0 * Os_TE_110829 Os_TE_110826 Chr8 23449714 23449715 - COPI2_LTR 4733 0.0003 (1/2997) 0 * * Os_TE_110775 Chr8 23434569 23434570 + XIKE 594 0.0017 (5/2955) 0 * * Os_TE_110758 Chr8 23428544 23428543 - ATLANTYS-LTR_OS 13740 0.0007 (2/2994) 0 * * Os_TE_110754 Chr8 23426281 23426282 + COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * * Os_TE_110740 Chr8 23416298 23416297 - ORSgTERT00201216 11284 0.0003 (1/2977) 0 * * Os_TE_110733 Chr8 23413458 23413459 + COPI2_LTR 4733 0.0007 (2/2998) 0 * Os_TE_110732 Os_TE_110732 Chr8 23413454 23413453 - COPI2_LTR 4733 0.0007 (2/2997) 0 * Os_TE_110733 Os_TE_110724 Chr8 23409019 23409020 - COPIA2-LTR_OS 6433 0.0004 (1/2288) 0 * * Os_TE_110704 Chr8 23402415 23402416 - OSTE21 1271 0.0003 (1/2995) 0 * * Os_TE_110690 Chr8 23388194 23388195 - TEMPINDAS 4259 0.0007 (2/2996) 0 * * Os_TE_110689 Chr8 23386670 23386669 + RIREX_LTR 8828 0.0003 (1/2966) 0 * * Os_TE_110687 Chr8 23386550 23386551 - INDITTO 263 0.0003 (1/2955) 0 * Os_TE_110686 Os_TE_110686 Chr8 23386548 23386547 + INDITTO 263 0.0003 (1/2957) 0 * Os_TE_110687 Os_TE_110664 Chr8 23377124 23376980 - TNR2A 152 0.3121 (826/2647) 1 Intact Os_TE_110663 Os_TE_110663 Chr8 23376978 23377124 + TNR2A 152 0.3077 (812/2639) 1 Intact Os_TE_110664 Os_TE_110655 Chr8 23374887 23374888 + COPIA2-LTR_OS 6433 0.0003 (1/2956) 0 * Os_TE_110654 Os_TE_110654 Chr8 23374883 23374882 - COPIA2-LTR_OS 6433 0.0003 (1/2939) 0 * Os_TE_110655 Os_TE_110653 Chr8 23374486 23361635 - RETRO2_LTR 12874 0.3066 (879/2867) 1 Intact Os_TE_110645 Os_TE_110645 Chr8 23361635 23374486 + RETRO2A_LTR 12895 0.3159 (905/2865) 1 Intact Os_TE_110653 Os_TE_110636 Chr8 23356965 23356966 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_110635 Os_TE_110635 Chr8 23356961 23356960 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_110636 Os_TE_110610 Chr8 23351260 23351036 - ORSgTEMT02400246 177 0.2938 (859/2924) 1 Intact Os_TE_110609 Os_TE_110609 Chr8 23351038 23351258 - ORSgTEMT02400179 221 0.3012 (890/2955) 1 Intact Os_TE_110610 Os_TE_110591 Chr8 23347444 23347443 + ORSgTEMT01701224 156 0.1676 (497/2965) 0 * * Os_TE_110549 Chr8 23329502 23329503 - SZ-55_LTR 10318 0.0003 (1/2996) 0 * Os_TE_110548 Os_TE_110548 Chr8 23329498 23329497 + SZ-55_LTR 10318 0.0003 (1/2992) 0 * Os_TE_110549 Os_TE_110530 Chr8 23326202 23326203 - COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_110529 Os_TE_110529 Chr8 23326198 23326197 + COPI2_LTR 4733 0.0003 (1/2999) 0 * Os_TE_110530 Os_TE_110528 Chr8 23325934 23325935 + RIREX_LTR 8828 0.0003 (1/2996) 0 * Os_TE_110527 Os_TE_110527 Chr8 23325930 23325929 - RIREX_LTR 8828 0.0003 (1/2994) 0 * Os_TE_110528 Os_TE_110513 Chr8 23321144 23317218 + RETROSAT4_LTR 13504 0.3031 (882/2910) 1 Solo_LTR * Os_TE_110498 Chr8 23313173 23313174 + INDITTO 263 0.0251 (75/2986) 0 * Os_TE_110497 Os_TE_110497 Chr8 23313171 23313170 - INDITTO 263 0.0261 (78/2984) 0 * Os_TE_110498 Os_TE_110495 Chr8 23298095 23311657 + EnSpm-11_OS 13126 0.3302 (904/2738) 1 Intact * Os_TE_110489 Chr8 23294875 23294874 - STOWAWAY51_OS 246 0.0003 (1/2973) 0 * Os_TE_110488 Os_TE_110488 Chr8 23294869 23294870 + STOWAWAY51_OS 246 0.0003 (1/2968) 0 * Os_TE_110489 Os_TE_110484 Chr8 23293187 23293188 + SZ-55_LTR 10318 0.0074 (22/2988) 0 * * Os_TE_110481 Chr8 23290219 23290220 + SZ-55_LTR 10318 0.0003 (1/2999) 0 * Os_TE_110480 Os_TE_110480 Chr8 23290215 23290214 - SZ-55_LTR 10318 0.0003 (1/2998) 0 * Os_TE_110481 Os_TE_110477 Chr8 23289529 23289530 - MPING 430 0.0060 (18/2999) 0 * Os_TE_110476 Os_TE_110476 Chr8 23289527 23289526 + MPING 430 0.0060 (18/2997) 0 * Os_TE_110477 Os_TE_110474 Chr8 23288380 23288379 + ORSgTEMT01601591 242 0.0007 (2/2981) 0 * Os_TE_110473 Os_TE_110473 Chr8 23288374 23288375 + STOWAWAY51_OS 246 0.0007 (2/2974) 0 * Os_TE_110474 Os_TE_110470 Chr8 23288083 23288084 - STOWAWAY9_OS 235 0.0010 (3/2944) 0 * * Os_TE_110467 Chr8 23286391 23286390 + NDNA1TNA_OS 334 0.0020 (6/2992) 0 * Os_TE_110466 Os_TE_110466 Chr8 23286390 23286391 + ORSgTEMT00100272 356 0.0020 (6/2990) 0 * Os_TE_110467 Os_TE_110464 Chr8 23285871 23285872 + ORSgTEMT01601591 242 0.0003 (1/2970) 0 * * Os_TE_110453 Chr8 23284350 23284349 + TRUNCATOR 2918 0.6743 (2019/2994) 0 * Os_TE_110452 Os_TE_110452 Chr8 23284349 23284350 - TRUNCATOR 2918 0.6510 (1852/2845) 0 * Os_TE_110453 Os_TE_110451 Chr8 23283520 23283519 + TRUNCATOR 2918 0.6732 (2006/2980) 0 * Os_TE_110450 Os_TE_110450 Chr8 23283519 23283520 - TRUNCATOR 2918 0.6695 (1985/2965) 0 * Os_TE_110451 Os_TE_110447 Chr8 23282714 23282715 + AMYLTP 383 0.0017 (5/2994) 0 * Os_TE_110446 Os_TE_110446 Chr8 23282706 23282705 - AMYLTP 383 0.0020 (6/2996) 0 * Os_TE_110447 Os_TE_110431 Chr8 23271794 23271795 - COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_110430 Os_TE_110430 Chr8 23271790 23271789 + COPI2_LTR 4733 0.0003 (1/2993) 0 * Os_TE_110431 Os_TE_110420 Chr8 23269154 23269155 + COPI2_LTR 4733 0.0003 (1/2985) 0 * Os_TE_110419 Os_TE_110419 Chr8 23269150 23269149 - COPI2_LTR 4733 0.0003 (1/2983) 0 * Os_TE_110420 Os_TE_110411 Chr8 23267129 23267128 - STOWAWAY51_OS 246 0.0003 (1/2995) 0 * * Os_TE_110393 Chr8 23256765 23256766 - SZ-48LTR 3632 0.0003 (1/2993) 0 * * Os_TE_110379 Chr8 23247356 23247355 - INDITTO 263 0.0003 (1/2987) 0 * * Os_TE_110321 Chr8 23229759 23229760 - ORSgTEMT00100848 160 0.0003 (1/2947) 0 * * Os_TE_110319 Chr8 23229415 23224434 + ORSiTERTOOT00381 4988 0.3166 (928/2931) 1 Intact Os_TE_110312 Os_TE_110312 Chr8 23224434 23229206 - SC-8_LTR 4951 0.3107 (926/2980) 1 Intact Os_TE_110319 Os_TE_110306 Chr8 23220582 23220583 + ORSiTERTOOT00296 5553 0.0003 (1/2981) 0 * Os_TE_110305 Os_TE_110305 Chr8 23220578 23220577 - SC-3_LTR 5748 0.0003 (1/2986) 0 * Os_TE_110306 Os_TE_110291 Chr8 23215436 23215437 + SC-8_LTR 4951 0.0007 (2/2988) 0 * Os_TE_110290 Os_TE_110290 Chr8 23215432 23215431 - SC-8_LTR 4951 0.0007 (2/2985) 0 * Os_TE_110291 Os_TE_110279 Chr8 23208463 23208464 - Cassandra_OS-LTR 764 0.7072 (2116/2992) 0 * * Os_TE_110277 Chr8 23208456 23209107 - DS-RICE4N 715 0.3060 (917/2997) 1 Intact * Os_TE_110253 Chr8 23200367 23200368 - COPI2_LTR 4733 0.0003 (1/2992) 0 * Os_TE_110252 Os_TE_110252 Chr8 23200363 23200362 + COPI2_LTR 4733 0.0003 (1/2990) 0 * Os_TE_110253 Os_TE_110251 Chr8 23200218 23200219 - COPIA2-LTR_OS 6433 0.0007 (2/2983) 0 * Os_TE_110250 Os_TE_110250 Chr8 23200214 23200213 + COPIA2-LTR_OS 6433 0.0007 (2/2980) 0 * Os_TE_110251 Os_TE_110232 Chr8 23191600 23191601 - RIRE2_LTR 11306 0.0324 (91/2810) 0 * * Os_TE_110212 Chr8 23187679 23187680 + SZ-55_LTR 10318 0.0020 (6/2978) 0 * Os_TE_110211 Os_TE_110211 Chr8 23187675 23187674 - SZ-55_LTR 10318 0.0020 (6/2978) 0 * Os_TE_110212 Os_TE_110209 Chr8 23186306 23186305 - ORSgTEMT01601493 303 0.0003 (1/2994) 0 * Os_TE_110208 Os_TE_110208 Chr8 23186303 23186304 - ORSgTEMT01602425 234 0.0003 (1/2994) 0 * Os_TE_110209 Os_TE_110194 Chr8 23181815 23177888 + RETROSAT4_LTR 13504 0.2977 (879/2953) 1 Solo_LTR * Os_TE_110189 Chr8 23177166 23166044 - ORSgTETN00200001 10994 0.2973 (877/2950) 1 Intact Os_TE_110184 Os_TE_110184 Chr8 23166045 23177166 + SPMLIKE 10989 0.3035 (900/2965) 1 Intact Os_TE_110189 Os_TE_110176 Chr8 23164362 23160380 + MDR2 6967 0.3013 (900/2987) 1 Intact Os_TE_110174 Os_TE_110174 Chr8 23160375 23164362 - MDR2 6967 0.3091 (927/2999) 1 Intact Os_TE_110176 Os_TE_110173 Chr8 23160001 23160000 - ORSiTEMT01300001 950 0.0080 (24/2998) 0 * * Os_TE_110159 Chr8 23149241 23149240 - F524 291 0.0014 (3/2141) 0 * * Os_TE_110154 Chr8 23147210 23147209 + COPI2_LTR 4733 0.0003 (1/2968) 0 * * Os_TE_110152 Chr8 23146970 23146971 + COPIA2-LTR_OS 6433 0.0003 (1/2981) 0 * Os_TE_110151 Os_TE_110151 Chr8 23146966 23146965 - COPIA2-LTR_OS 6433 0.0003 (1/2979) 0 * Os_TE_110152 Os_TE_110130 Chr8 23134599 23134600 + ORSiCMCM00100019 2717 0.0273 (81/2971) 0 * * Os_TE_110129 Chr8 23134187 23134188 - RIRE3A_LTR 10580 0.0003 (1/2995) 0 * Os_TE_110128 Os_TE_110128 Chr8 23134183 23134182 + RIRE3A_LTR 10580 0.0003 (1/2994) 0 * Os_TE_110129 Os_TE_110119 Chr8 23128817 23128816 + COWARD-2 350 0.0003 (1/2985) 0 * * Os_TE_110090 Chr8 23120697 23120696 + RETRO2_LTR 12874 0.0294 (85/2887) 0 * * Os_TE_110077 Chr8 23115616 23115617 + Cassandra_OS-LTR 764 0.0003 (1/2987) 0 * Os_TE_110076 Os_TE_110076 Chr8 23115612 23115611 - Cassandra_OS-LTR 764 0.0007 (2/2991) 0 * Os_TE_110077 Os_TE_110066 Chr8 23110790 23110789 - COPI2_LTR 4733 0.0003 (1/2989) 0 * * Os_TE_110064 Chr8 23110663 23110662 - COPI2_LTR 4733 0.0003 (1/2995) 0 * * Os_TE_110061 Chr8 23110311 23097933 - RETROSAT4_LTR 13504 0.3038 (907/2986) 1 Intact * Os_TE_110041 Chr8 23096355 23096356 - TRUNCATOR 2918 0.0003 (1/2989) 0 * * Os_TE_110032 Chr8 23089489 23089488 + ORSgTEMT01601591 242 0.0003 (1/2996) 0 * Os_TE_110031 Os_TE_110031 Chr8 23089483 23089484 + STOWAWAY51_OS 246 0.0003 (1/2996) 0 * Os_TE_110032 Os_TE_110030 Chr8 23088584 23088247 - ORSgTEMT00100799 337 0.3018 (903/2992) 1 Intact Os_TE_110029 Os_TE_110029 Chr8 23088248 23088581 + NDNA1TNA_OS 334 0.3011 (899/2986) 1 Intact Os_TE_110030 Os_TE_110021 Chr8 23082676 23082160 + MuDR4_OS 7610 0.3034 (908/2993) 1 Intact * Os_TE_110016 Chr8 23077404 23077405 - ORSiTERTOOT00367 5639 0.0003 (1/2995) 0 * Os_TE_110015 Os_TE_110015 Chr8 23077400 23077399 + ORSiTERTOOT00367 5639 0.0003 (1/2995) 0 * Os_TE_110016 Os_TE_110010 Chr8 23074411 23074412 - SZ-48LTR 3632 0.7002 (2041/2915) 0 * * Os_TE_109996 Chr8 23067892 23067891 + DITTO 244 0.0003 (1/2971) 0 * * Os_TE_109993 Chr8 23067676 23067677 + MPING 430 0.0003 (1/2947) 0 * * Os_TE_109955 Chr8 23046979 23046978 - SZ-COM 1308 0.0091 (14/1543) 0 * * Os_TE_109895 Chr8 23018574 23018575 + SPMLIKE 10989 0.6737 (2009/2982) 0 * * Os_TE_109850 Chr8 23006869 23006870 - MPING 430 0.0007 (2/2985) 0 * Os_TE_109849 Os_TE_109849 Chr8 23006867 23006866 + MPING 430 0.0007 (2/2988) 0 * Os_TE_109850 Os_TE_109838 Chr8 23001265 23001266 + TWIFBIG 3567 0.0004 (1/2834) 0 * * Os_TE_109815 Chr8 22995470 22995471 - RIREX_LTR 8828 0.0007 (2/2995) 0 * Os_TE_109814 Os_TE_109814 Chr8 22995466 22995465 + RIREX_LTR 8828 0.0007 (2/2993) 0 * Os_TE_109815 Os_TE_109780 Chr8 22985852 22985853 - TYPEU1 380 0.0258 (77/2985) 0 * Os_TE_109779 Os_TE_109779 Chr8 22985844 22985843 + TYPEU1 380 0.0275 (82/2984) 0 * Os_TE_109780 Os_TE_109771 Chr8 22981581 22981582 + RIREX_LTR 8828 0.0010 (3/2997) 0 * Os_TE_109770 Os_TE_109770 Chr8 22981577 22981576 - RIREX_LTR 8828 0.0010 (3/2992) 0 * Os_TE_109771 Os_TE_109762 Chr8 22977491 22977492 + SZ-55_LTR 10318 0.7105 (2128/2995) 0 * Os_TE_109761 Os_TE_109761 Chr8 22977487 22977486 - SZ-55_LTR 10318 0.6876 (1957/2846) 0 * Os_TE_109762 Os_TE_109742 Chr8 22970611 22970053 - ENSPM4_OS 11610 0.3011 (901/2992) 1 Intact * Os_TE_109679 Chr8 22950391 22950392 + RETROSAT4_LTR 13504 0.7237 (2001/2765) 0 * Os_TE_109678 Os_TE_109678 Chr8 22950387 22950386 - SZ-35LTR 3853 0.7369 (2095/2843) 0 * Os_TE_109679 Os_TE_109661 Chr8 22947502 22947503 + INDITTO 263 0.0040 (12/2975) 0 * Os_TE_109660 Os_TE_109660 Chr8 22947500 22947499 - INDITTO 263 0.0040 (12/2980) 0 * Os_TE_109661 Os_TE_109639 Chr8 22940098 22940099 - MPING 430 0.0003 (1/2975) 0 * Os_TE_109638 Os_TE_109638 Chr8 22940096 22940095 + MPING 430 0.0003 (1/2985) 0 * Os_TE_109639 Os_TE_109620 Chr8 22934802 22934801 - RIREX_LTR 8828 0.0003 (1/2934) 0 * * Os_TE_109593 Chr8 22926776 22926775 - ORSgTEMT00501703 149 0.7038 (2091/2971) 0 * * Os_TE_109567 Chr8 22907929 22915644 + RIREX_LTR 8828 0.0010 (3/2964) 1 Intact * Os_TE_109563 Chr8 22906098 22906099 - COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_109562 Os_TE_109562 Chr8 22906094 22906093 + COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_109563 Os_TE_109492 Chr8 22874536 22874535 + MUDRN5_OS 374 0.0003 (1/2977) 0 * * Os_TE_109486 Chr8 22871240 22864771 + COPIA2-LTR_OS 6433 0.2965 (884/2981) 1 Intact * Os_TE_109475 Chr8 22861943 22851395 + ENSPM4_OS 11610 0.2968 (881/2968) 1 Intact Os_TE_109473 Os_TE_109473 Chr8 22851395 22861943 - ENSPM4_OS 11610 0.3051 (907/2973) 1 Intact Os_TE_109475 Os_TE_109432 Chr8 22843434 22843433 + ORSgTEMT04600010 284 0.0020 (6/2962) 0 * * Os_TE_109412 Chr8 22839717 22839716 + RETRO1_LTR 8314 0.0003 (1/2943) 0 * * Os_TE_109396 Chr8 22831109 22831110 + COPI2_LTR 4733 0.0003 (1/2968) 0 * Os_TE_109395 Os_TE_109395 Chr8 22831105 22831104 - COPI2_LTR 4733 0.0003 (1/2970) 0 * Os_TE_109396 Os_TE_109392 Chr8 22829179 22829180 + COPIA2-LTR_OS 6433 0.0004 (1/2857) 0 * Os_TE_109391 Os_TE_109391 Chr8 22829175 22829174 - COPIA2-LTR_OS 6433 0.0003 (1/2884) 0 * Os_TE_109392 Os_TE_109388 Chr8 22819162 22819163 - RETRO1_LTR 8314 0.0003 (1/2890) 0 * Os_TE_109387 Os_TE_109387 Chr8 22819158 22819157 + RETRO2A_LTR 12895 0.0003 (1/2884) 0 * Os_TE_109388 Os_TE_109377 Chr8 22812504 22812505 + SC-8_LTR 4951 0.0007 (2/2983) 0 * Os_TE_109376 Os_TE_109376 Chr8 22812500 22812499 - SC-8_LTR 4951 0.0007 (2/2983) 0 * Os_TE_109377 Os_TE_109307 Chr8 22777475 22777474 + NDNA1TNA_OS 334 0.0007 (2/2996) 0 * Os_TE_109306 Os_TE_109306 Chr8 22777474 22777475 - ORSgTEMT00100799 337 0.0007 (2/2995) 0 * Os_TE_109307 Os_TE_109227 Chr8 22755996 22755997 - INDITTO 263 0.0003 (1/2958) 0 * Os_TE_109226 Os_TE_109226 Chr8 22755994 22755993 + INDITTO 263 0.0003 (1/2950) 0 * Os_TE_109227 Os_TE_109203 Chr8 22747435 22747436 - RIREX_LTR 8828 0.0003 (1/2996) 0 * * Os_TE_109198 Chr8 22746825 22746826 - TNR2A 152 0.0211 (62/2940) 0 * * Os_TE_109170 Chr8 22739118 22727611 + SPMLIKE 10989 0.2987 (890/2980) 1 Intact Os_TE_109166 Os_TE_109166 Chr8 22727611 22739119 - ORSgTETN00200001 10994 0.2911 (860/2954) 1 Intact Os_TE_109170 Os_TE_109157 Chr8 22726752 22726751 + DS-RICE4N 715 0.0003 (1/2932) 0 * * Os_TE_109126 Chr8 22717158 22717159 + INDITTO 263 0.0003 (1/2970) 0 * Os_TE_109125 Os_TE_109125 Chr8 22717156 22717155 - INDITTO 263 0.0003 (1/2986) 0 * Os_TE_109126 Os_TE_109123 Chr8 22717107 22717108 + INDITTO 263 0.7021 (2102/2994) 0 * Os_TE_109122 Os_TE_109122 Chr8 22717105 22717104 + ORSgTETNOOT02406 265 0.7018 (2102/2995) 0 * Os_TE_109123 Os_TE_109120 Chr8 22716205 22716204 - COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * * Os_TE_109117 Chr8 22714282 22714283 + CASTAWAY 364 0.7032 (2104/2992) 0 * Os_TE_109116 Os_TE_109116 Chr8 22714281 22714280 - CASTAWAY 364 0.7037 (2107/2994) 0 * Os_TE_109117 Os_TE_109098 Chr8 22709369 22709370 + TRUNCATOR 2918 0.0020 (6/2974) 0 * * Os_TE_109068 Chr8 22699144 22699143 - STOWAWAY51_OS 246 0.0037 (11/2947) 0 * Os_TE_109067 Os_TE_109067 Chr8 22699141 22699142 - STOWAWAY51_OS 246 0.0034 (10/2943) 0 * Os_TE_109068 Os_TE_109051 Chr8 22695285 22696365 - MIDWAY 985 0.3343 (897/2683) 1 Intact * Os_TE_109016 Chr8 22684823 22679337 - MERMITEJ 1498 0.3082 (914/2966) 1 Intact Os_TE_109013 Os_TE_109013 Chr8 22679337 22684823 - MERMITEJ 1498 0.2918 (847/2903) 1 Intact Os_TE_109016 Os_TE_108996 Chr8 22663345 22663346 + GYPSY-A_LTR 8951 0.6999 (2080/2972) 0 * * Os_TE_108979 Chr8 22645142 22645141 + TNR2A 152 0.0020 (6/2973) 0 * * Os_TE_108945 Chr8 22629720 22629719 - SPMLIKE 10989 0.0007 (2/2996) 0 * * Os_TE_108939 Chr8 22625114 22625115 - SC-8_LTR 4951 0.0023 (7/2998) 0 * Os_TE_108938 Os_TE_108938 Chr8 22625110 22625109 + SC-8_LTR 4951 0.0023 (7/2996) 0 * Os_TE_108939 Os_TE_108916 Chr8 22612293 22612294 - ORSgTEMT02400179 221 0.5261 (825/1568) 0 * * Os_TE_108915 Chr8 22611842 22611843 - COPI2_LTR 4733 0.0003 (1/2939) 0 * * Os_TE_108909 Chr8 22609507 22609508 - COPIA2-LTR_OS 6433 0.0007 (2/2987) 0 * Os_TE_108908 Os_TE_108908 Chr8 22609503 22609502 + COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_108909 Os_TE_108900 Chr8 22604104 22604103 - MICROPON-LIKE-1 428 0.6860 (2047/2984) 0 * * Os_TE_108877 Chr8 22598722 22569351 - ORSgTETN00200001 10994 0.3061 (896/2927) 1 Intact Os_TE_108845 Os_TE_108845 Chr8 22569351 22598722 + SPMLIKE 10989 0.2980 (863/2896) 1 Intact Os_TE_108877 Os_TE_108832 Chr8 22561151 22561152 + SPMLIKE 10989 0.6733 (1906/2831) 0 * * Os_TE_108797 Chr8 22544666 22544667 - SUSU 279 0.0017 (5/2937) 0 * * Os_TE_108793 Chr8 22542893 22542892 + ORSgTETNOOT01219 231 0.0003 (1/2996) 0 * * Os_TE_108764 Chr8 22524334 22524335 + ORSiTERTOOT00296 5553 0.0003 (1/2961) 0 * Os_TE_108763 Os_TE_108763 Chr8 22524330 22524329 - SC-3_LTR 5748 0.0003 (1/2945) 0 * Os_TE_108764 Os_TE_108760 Chr8 22521094 22521093 + TRUNCATOR 2918 0.0017 (5/2980) 0 * * Os_TE_108759 Chr8 22521079 22521078 - ORSgTETN00200001 10994 0.6642 (1877/2826) 0 * * Os_TE_108747 Chr8 22508273 22511611 - SZ-46LTR 3360 0.3191 (948/2971) 1 Intact * Os_TE_108739 Chr8 22503235 22503234 + COPIA2-LTR_OS 6433 0.0003 (1/2953) 0 * * Os_TE_108724 Chr8 22495889 22495888 - COPI2_LTR 4733 0.0030 (9/2990) 0 * * Os_TE_108714 Chr8 22492534 22492535 + COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_108713 Os_TE_108713 Chr8 22492530 22492529 - COPIA2-LTR_OS 6433 0.0007 (2/2993) 0 * Os_TE_108714 Os_TE_108708 Chr8 22490929 22490928 + RMU3_OS 1117 0.0011 (3/2679) -1 * * Os_TE_108699 Chr8 22489147 22489148 + RETROSAT2LTRA 3112 0.0013 (4/2995) 0 * * Os_TE_108693 Chr8 22485846 22485847 - COPI2_LTR 4733 0.0071 (21/2948) 0 * * Os_TE_108662 Chr8 22470661 22470662 - RETRO2_LTR 12874 0.0017 (5/2999) 0 * * Os_TE_108648 Chr8 22459698 22459699 + RIREX_LTR 8828 0.0008 (2/2659) 0 * * Os_TE_108632 Chr8 22455005 22455006 + RIREX_LTR 8828 0.0014 (4/2928) 0 * * Os_TE_108628 Chr8 22453746 22453745 + TRUNCATOR 2918 0.6914 (2068/2991) 0 * Os_TE_108627 Os_TE_108627 Chr8 22453744 22453745 - TRUNCATOR 2918 0.6279 (1632/2599) 0 * Os_TE_108628 Os_TE_108604 Chr8 22446520 22446519 + TWIFB1 3737 0.0003 (1/2945) 0 * * Os_TE_108603 Chr8 22446378 22446377 + MPING 430 0.0003 (1/2936) 0 * Os_TE_108602 Os_TE_108602 Chr8 22446364 22446365 - MPING 430 0.0003 (1/2907) 0 * Os_TE_108603 Os_TE_108564 Chr8 22429447 22429446 - STOWAWAY51_OS 246 0.0686 (203/2958) 0 * Os_TE_108563 Os_TE_108563 Chr8 22429444 22429445 - STOWAWAY51_OS 246 0.0692 (205/2964) 0 * Os_TE_108564 Os_TE_108558 Chr8 22426385 22421710 - SZ-48LTR 3632 0.3206 (960/2994) 1 Intact * Os_TE_108554 Chr8 22421407 22421709 - ORSgTEMT00101019 331 0.6815 (963/1413) 1 Intact * Os_TE_108550 Chr8 22417345 22417346 - TELIA 141 0.0003 (1/2888) 0 * Os_TE_108549 Os_TE_108549 Chr8 22417337 22417336 + TELIA 141 0.0003 (1/2928) 0 * Os_TE_108550 Os_TE_108548 Chr8 22417285 22417286 + ORSgTEMT00100531 325 0.6892 (2053/2979) 0 * * Os_TE_108543 Chr8 22415020 22415021 - ORSgTEMT00501568 147 0.0020 (6/2933) 0 * * Os_TE_108515 Chr8 22403968 22403969 + ORSiTERTOOT00226 792 0.0003 (1/2896) 0 * Os_TE_108514 Os_TE_108514 Chr8 22403964 22403963 - SZ-22_LTR 4403 0.0003 (1/2889) 0 * Os_TE_108515 Os_TE_108513 Chr8 22402780 22402781 - RETRO2_LTR 12874 0.0017 (5/2998) 0 * Os_TE_108512 Os_TE_108512 Chr8 22402776 22402775 + SZLTR 1249 0.0017 (5/2997) 0 * Os_TE_108513 Os_TE_108511 Chr8 22402755 22402754 + JINHUA 479 0.0003 (1/2997) 0 * * Os_TE_108483 Chr8 22383285 22383286 - COWARD 200 0.0020 (6/2998) 0 * * Os_TE_108482 Chr8 22383122 22383121 + ORSgTEMT01601591 242 0.0003 (1/2995) 0 * Os_TE_108481 Os_TE_108481 Chr8 22383116 22383117 + STOWAWAY51_OS 246 0.0003 (1/2994) 0 * Os_TE_108482 Os_TE_108479 Chr8 22380350 22380351 + ORSgTEMT02400110 218 0.6596 (1800/2729) 0 * * Os_TE_108456 Chr8 22373801 22373802 - TELIA 141 0.0014 (4/2780) 0 * Os_TE_108455 Os_TE_108455 Chr8 22373793 22373792 + TELIA 141 0.0014 (4/2848) 0 * Os_TE_108456 Os_TE_108445 Chr8 22372131 22372130 + COPIA2-LTR_OS 6433 0.0003 (1/2934) 0 * * Os_TE_108443 Chr8 22371955 22371956 - EnSpm-13_OS 11171 0.0018 (5/2834) -1 * * Os_TE_108407 Chr8 22359518 22359519 + RETRO1_LTR 8314 0.0007 (2/2997) 0 * Os_TE_108406 Os_TE_108406 Chr8 22359514 22359513 - RETRO1_LTR 8314 0.0007 (2/2996) 0 * Os_TE_108407 Os_TE_108378 Chr8 22342190 22342191 - RETROSAT4_LTR 13504 0.0242 (71/2929) 0 * Os_TE_108377 Os_TE_108377 Chr8 22342186 22342185 + RETROSAT4_LTR 13504 0.0252 (74/2933) 0 * Os_TE_108378 Os_TE_108371 Chr8 22339452 22339453 + NDNA2TNA_OS 346 0.0010 (3/2988) 0 * Os_TE_108370 Os_TE_108370 Chr8 22339451 22339450 - NDNA2TNA_OS 346 0.0010 (3/2986) 0 * Os_TE_108371 Os_TE_108343 Chr8 22332798 22332799 - TEMPINDAS 4259 0.0010 (3/2965) 0 * Os_TE_108342 Os_TE_108342 Chr8 22332791 22332790 + TEMPINDAS 4259 0.0010 (3/2965) 0 * Os_TE_108343 Os_TE_108278 Chr8 22294403 22294402 + ORSiTERTOOT00296 5553 0.0007 (2/2986) 0 * * Os_TE_108248 Chr8 22280441 22280440 - SEVERIN-2 1952 0.0003 (1/2952) 0 * Os_TE_108247 Os_TE_108247 Chr8 22280439 22280440 + SEVERIN-2 1952 0.0003 (1/2936) 0 * Os_TE_108248 Os_TE_108195 Chr8 22265461 22265462 - AMYLTP 383 0.0007 (2/2990) 0 * * Os_TE_108181 Chr8 22247028 22247027 - UNIQUE 158 0.0003 (1/2939) 0 * * Os_TE_108155 Chr8 22234537 22234536 - ORSgTEMT00100799 337 0.0003 (1/2977) 0 * Os_TE_108154 Os_TE_108154 Chr8 22234536 22234537 + NDNA1TNA_OS 334 0.0003 (1/2954) 0 * Os_TE_108155 Os_TE_108146 Chr8 22233831 22233832 - ORSgTETNOOT01072 229 0.0003 (1/2967) 0 * * Os_TE_108135 Chr8 22232061 22232062 - SZ-40LTR 2465 0.0003 (1/2981) 0 * * Os_TE_108107 Chr8 22211882 22211883 + MPING 430 0.0007 (2/2991) 0 * Os_TE_108106 Os_TE_108106 Chr8 22211880 22211879 - MPING 430 0.0003 (1/2991) 0 * Os_TE_108107 Os_TE_108095 Chr8 22203486 22203487 - COPI2_LTR 4733 0.0003 (1/2968) 0 * Os_TE_108094 Os_TE_108094 Chr8 22203482 22203481 + COPI2_LTR 4733 0.0003 (1/2958) 0 * Os_TE_108095 Os_TE_108075 Chr8 22192271 22192272 + STOWAWAY51_OS 246 0.0003 (1/2991) 0 * * Os_TE_108074 Chr8 22190698 22190699 - ORSgTEMT00900099 250 0.0003 (1/2936) 0 * * Os_TE_107991 Chr8 22173816 22173815 - TEMPINDAS 4259 0.6589 (1972/2993) 0 * * Os_TE_107990 Chr8 22172016 22166073 - COPIA2-LTR_OS 6433 0.3582 (1064/2970) 1 Intact Os_TE_107988 Os_TE_107988 Chr8 22165745 22172016 + COPIA2-LTR_OS 6433 0.3341 (964/2885) 1 Intact Os_TE_107990 Os_TE_107967 Chr8 22160850 22160851 + COPI2_LTR 4733 0.0003 (1/2901) 0 * Os_TE_107966 Os_TE_107966 Chr8 22160846 22160845 - COPI2_LTR 4733 0.0003 (1/2902) 0 * Os_TE_107967 Os_TE_107963 Chr8 22159847 22159848 + ORSgTETNOOT01834 251 0.0084 (23/2744) 0 * Os_TE_107962 Os_TE_107962 Chr8 22159845 22159844 + ORSgTETNOOT01834 251 0.0091 (26/2859) 0 * Os_TE_107963 Os_TE_107959 Chr8 22157156 22157157 + ENSPM3_OS 10837 0.0020 (6/2978) 0 * Os_TE_107958 Os_TE_107958 Chr8 22157154 22157153 - ENSPM3_OS 10837 0.0020 (6/2962) 0 * Os_TE_107959 Os_TE_107917 Chr8 22142262 22142430 - ORSgTEMT06000088 181 0.3567 (1060/2972) 1 Intact * Os_TE_107892 Chr8 22133100 22133099 - STOWAWAY51_OS 246 0.0003 (1/2948) 0 * Os_TE_107891 Os_TE_107891 Chr8 22133094 22133095 + STOWAWAY51_OS 246 0.0003 (1/2953) 0 * Os_TE_107892 Os_TE_107890 Chr8 22131742 22131743 - SZ-55_LTR 10318 0.0007 (2/2997) 0 * Os_TE_107889 Os_TE_107889 Chr8 22131738 22131737 + SZ-55_LTR 10318 0.0007 (2/2996) 0 * Os_TE_107890 Os_TE_107863 Chr8 22124779 22124778 + STOWAWAY49_OS 241 0.0007 (2/2991) 0 * * Os_TE_107858 Chr8 22123070 22123071 + SZ-55_LTR 10318 0.0003 (1/2947) 0 * * Os_TE_107856 Chr8 22122646 22122645 + COPI2_LTR 4733 0.0003 (1/2940) 0 * * Os_TE_107816 Chr8 22110352 22110351 + DS-RICE3N 525 0.0003 (1/2994) 0 * * Os_TE_107807 Chr8 22106049 22106050 + RIREX_LTR 8828 0.0007 (2/2986) 0 * Os_TE_107806 Os_TE_107806 Chr8 22106045 22106044 - RIREX_LTR 8828 0.0007 (2/2989) 0 * Os_TE_107807 Os_TE_107804 Chr8 22105576 22105577 - ORSgTETN00200001 10994 0.0007 (2/2984) 0 * Os_TE_107803 Os_TE_107803 Chr8 22105574 22105573 + SPMLIKE 10989 0.0007 (2/2992) 0 * Os_TE_107804 Os_TE_107798 Chr8 22102802 22102803 + INDITTO 263 0.0027 (8/2939) 0 * Os_TE_107797 Os_TE_107797 Chr8 22102800 22102799 - INDITTO 263 0.0027 (8/2945) 0 * Os_TE_107798 Os_TE_107789 Chr8 22095718 22095719 - RIREX_LTR 8828 0.0007 (2/2949) 0 * Os_TE_107788 Os_TE_107788 Chr8 22095714 22095713 + RIREX_LTR 8828 0.0007 (2/2951) 0 * Os_TE_107789 Os_TE_107787 Chr8 22095613 22095614 + SPMLIKE 10989 0.0003 (1/2964) 0 * Os_TE_107786 Os_TE_107786 Chr8 22095611 22095610 - ORSgTETN00200001 10994 0.0003 (1/2955) 0 * Os_TE_107787 Os_TE_107747 Chr8 22072992 22078711 - RETRO2_LTR 12874 0.2998 (897/2992) 1 Intact * Os_TE_107746 Chr8 22072245 22072244 - RETROSAT2LTRA 3112 0.0003 (1/2975) 0 * * Os_TE_107725 Chr8 22064758 22064759 + RIRE3_LTR 12054 0.0004 (1/2435) 0 * Os_TE_107724 Os_TE_107724 Chr8 22064754 22064753 - RIRE3_LTR 12054 0.0004 (1/2448) 0 * Os_TE_107725 Os_TE_107720 Chr8 22063390 22063389 - RETROSAT2LTR 12796 0.0033 (8/2450) 0 * * Os_TE_107705 Chr8 22052374 22052373 + COPI2_LTR 4733 0.5645 (1684/2983) 0 * * Os_TE_107675 Chr8 22040474 22040473 + ORSiTERTOOT00296 5553 0.0003 (1/2996) 0 * * Os_TE_107632 Chr8 22010952 22010953 - COPI2_LTR 4733 0.0003 (1/2983) 0 * Os_TE_107631 Os_TE_107631 Chr8 22010948 22010947 + COPI2_LTR 4733 0.0003 (1/2984) 0 * Os_TE_107632 Os_TE_107619 Chr8 22003041 22003042 - SC-3_LTR 5748 0.0003 (1/2983) 0 * Os_TE_107618 Os_TE_107618 Chr8 22003037 22003036 + ORSiTERTOOT00296 5553 0.0003 (1/2991) 0 * Os_TE_107619 Os_TE_107606 Chr8 21996351 21999447 - RETROSAT2LTR 12796 0.3011 (892/2962) 1 Solo_LTR * Os_TE_107587 Chr8 21991914 21991913 - RETROSAT2LTR 12796 0.5683 (1702/2995) 0 * * Os_TE_107584 Chr8 21990279 21990278 + SETARIA 1402 0.0040 (8/2017) 0 * * Os_TE_107577 Chr8 21987505 21987506 - OSTE18 129 0.7068 (2112/2988) 0 * * Os_TE_107575 Chr8 21986200 21986201 + MDR2 6967 0.1396 (415/2972) 0 * * Os_TE_107554 Chr8 21977636 21977637 + ORSgTEMT00100818 160 0.8782 (2618/2981) 0.94 * * Os_TE_107462 Chr8 21946607 21946608 - COPI2_LTR 4733 0.0004 (1/2568) 0 * * Os_TE_107449 Chr8 21940516 21940517 + COPIA2-LTR_OS 6433 0.0042 (11/2607) 0 * Os_TE_107448 Os_TE_107448 Chr8 21940512 21940511 - COPIA2-LTR_OS 6433 0.0042 (11/2597) 0 * Os_TE_107449 Os_TE_107437 Chr8 21936060 21936059 + SZ-9LTR 965 0.0034 (9/2649) 0 * * Os_TE_107434 Chr8 21934074 21934075 + COPI2_LTR 4733 0.0004 (1/2631) 0 * Os_TE_107433 Os_TE_107433 Chr8 21934070 21934069 - COPI2_LTR 4733 0.0004 (1/2635) 0 * Os_TE_107434 Os_TE_107371 Chr8 21883780 21883779 + RIREX_LTR 8828 0.0003 (1/2986) 0 * * Os_TE_107370 Chr8 21883561 21883562 + CASTAWAY 364 0.6952 (1982/2851) 0 * Os_TE_107369 Os_TE_107369 Chr8 21883559 21883558 - ORSgTEMT00600523 366 0.6924 (1967/2841) 0 * Os_TE_107370 Os_TE_107366 Chr8 21882321 21882322 + COPIA2-LTR_OS 6433 0.0064 (19/2987) 0 * Os_TE_107365 Os_TE_107365 Chr8 21882317 21882316 + COPIA2-LTR_OS 6433 0.0077 (23/2984) 0 * Os_TE_107366 Os_TE_107354 Chr8 21879453 21879454 + ORSgTEMT00500560 148 0.7084 (2118/2990) 0 * * Os_TE_107353 Chr8 21879157 21879156 - ORSgTEMT01700029 143 0.7081 (2093/2956) 0 * Os_TE_107352 Os_TE_107352 Chr8 21879154 21879155 + ORSgTEMT01701115 144 0.7056 (2092/2965) 0 * Os_TE_107353 Os_TE_107343 Chr8 21878265 21878264 + ORSgTEMT01400025 210 0.0182 (20/1096) 0 * * Os_TE_107342 Chr8 21877561 21877562 + MPING 430 0.0010 (2/1998) 0 * * Os_TE_107340 Chr8 21877540 21877539 + ORSgTEMT00100531 325 0.7090 (2120/2990) 0 * * Os_TE_107332 Chr8 21877183 21877333 + ORSgTEMT00501204 149 0.3544 (863/2435) 1 Intact * Os_TE_107308 Chr8 21861699 21865548 + RETROSAT4_LTR 13504 0.0825 (218/2641) 1 Solo_LTR * Os_TE_107267 Chr8 21837359 21837360 - TRSA_OS 353 0.0007 (2/2988) 0 * * Os_TE_107253 Chr8 21830071 21830072 + ORSgTEMT00901862 245 0.0312 (83/2658) 0 * Os_TE_107252 Os_TE_107252 Chr8 21830069 21830068 + ORSgTEMT00900266 245 0.0281 (76/2701) 0 * Os_TE_107253 Os_TE_107241 Chr8 21827861 21827860 + COPIA2-LTR_OS 6433 0.0003 (1/2976) 0 * * Os_TE_107228 Chr8 21825745 21825746 - RETRO2_LTR 12874 0.7084 (2114/2984) 0 * Os_TE_107227 Os_TE_107227 Chr8 21825741 21825740 + RETRO2_LTR 12874 0.7021 (2067/2944) 0.09 * Os_TE_107228 Os_TE_107219 Chr8 21821700 21821701 - OLO24 345 0.0007 (2/2992) 0 * Os_TE_107218 Os_TE_107218 Chr8 21821698 21821697 + OLO24 345 0.0007 (2/2992) 0 * Os_TE_107219 Os_TE_107214 Chr8 21821179 21821178 - STOWAWAY15-2_OS 145 0.0003 (1/2976) 0 * * Os_TE_107187 Chr8 21806789 21806790 + RIREX_LTR 8828 0.0003 (1/2988) 0 * Os_TE_107186 Os_TE_107186 Chr8 21806785 21806784 - RIREX_LTR 8828 0.0003 (1/2986) 0 * Os_TE_107187 Os_TE_107163 Chr8 21793919 21793918 - TYPEM 227 0.0024 (7/2864) 0 * Os_TE_107162 Os_TE_107162 Chr8 21793918 21793919 - ORSgTEMT02400246 177 0.0023 (6/2658) 0 * Os_TE_107163 Os_TE_107156 Chr8 21792296 21792297 - ORSgTEMT00901300 218 0.0007 (2/2758) 0 * * Os_TE_107146 Chr8 21791588 21791589 + COPIA2-LTR_OS 6433 0.0007 (2/2994) 0 * Os_TE_107145 Os_TE_107145 Chr8 21791584 21791583 - COPIA2-LTR_OS 6433 0.0007 (2/2992) 0 * Os_TE_107146 Os_TE_107133 Chr8 21789343 21789344 - CASTAWAY 364 0.8378 (2484/2965) 0 * Os_TE_107132 Os_TE_107132 Chr8 21789341 21789340 + ORSgTEMT00600272 361 0.8388 (2498/2978) 0 * Os_TE_107133 Os_TE_107130 Chr8 21787246 21787245 + ORSgTEMT00100272 356 0.0023 (7/2996) 0 * Os_TE_107129 Os_TE_107129 Chr8 21787245 21787246 + NDNA1TNA_OS 334 0.0027 (8/2994) 0 * Os_TE_107130 Os_TE_107125 Chr8 21785741 21785742 + MUDRN2_OS 756 0.0023 (7/2982) 0 * Os_TE_107124 Os_TE_107124 Chr8 21785733 21785732 - MUDRN3_OS 903 0.0027 (8/2982) 0 * Os_TE_107125 Os_TE_107073 Chr8 21762472 21762473 - ORSgTEMT00101657 321 0.0027 (8/2984) 0 * * Os_TE_107067 Chr8 21754342 21754343 - MPING 430 0.0080 (24/2987) 0 * Os_TE_107066 Os_TE_107066 Chr8 21754340 21754339 + MPING 430 0.0080 (24/2988) 0 * Os_TE_107067 Os_TE_107032 Chr8 21750130 21750131 - ORSgTEMT00501447 126 0.0023 (7/2995) 0 * Os_TE_107031 Os_TE_107031 Chr8 21750128 21750127 - ORSgTEMT00500675 140 0.0023 (7/2997) 0 * Os_TE_107032 Os_TE_107030 Chr8 21749758 21749759 + RETRO2A_LTR 12895 0.5613 (1635/2913) 0 * Os_TE_107029 Os_TE_107029 Chr8 21749754 21749753 - RETRO2_LTR 12874 0.5719 (1703/2978) 0 * Os_TE_107030 Os_TE_107027 Chr8 21749426 21749425 - ORSgTEMT01400019 216 0.0027 (8/2925) 0 * * Os_TE_107026 Chr8 21749401 21749400 + DS-RICE4N 715 0.0003 (1/2925) 0 * * Os_TE_107025 Chr8 21748993 21748994 - DNAUN1_OS 408 0.0014 (4/2859) 0 * * Os_TE_107018 Chr8 21746799 21746800 - COPIA2-LTR_OS 6433 0.0003 (1/2927) 0 * Os_TE_107017 Os_TE_107017 Chr8 21746795 21746794 + COPIA2-LTR_OS 6433 0.0003 (1/2955) 0 * Os_TE_107018 Os_TE_107013 Chr8 21745902 21745903 + COPIA2-LTR_OS 6433 0.0003 (1/2975) 0 * Os_TE_107012 Os_TE_107012 Chr8 21745898 21745897 - COPIA2-LTR_OS 6433 0.0003 (1/2975) 0 * Os_TE_107013 Os_TE_107011 Chr8 21745409 21745184 + ORSgTEMT02400034 225 0.7298 (2115/2898) 1 Intact Os_TE_107009 Os_TE_107009 Chr8 21745184 21745408 - ORSgTEMT02400246 177 0.7286 (2110/2896) 1 Intact Os_TE_107011 Os_TE_107007 Chr8 21744709 21744710 - STOWAWAY51_OS 246 0.0017 (5/2943) 0 * * Os_TE_106991 Chr8 21733531 21733530 + SPMLIKE 10989 0.0024 (7/2940) 0 * * Os_TE_106986 Chr8 21732362 21732361 - ORSiTERTOOT00074 4935 0.0007 (2/2956) 0 * * Os_TE_106968 Chr8 21728989 21728650 + NDNA1TNA_OS 334 0.1424 (419/2942) 1 Intact Os_TE_106967 Os_TE_106967 Chr8 21728650 21728989 - NDNA1TNA_OS 334 0.1393 (409/2936) 1 Intact Os_TE_106968 Os_TE_106958 Chr8 21719826 21719827 + MPING 430 0.0013 (4/2963) 0 * * Os_TE_106956 Chr8 21718694 21718693 - CENTRE 280 0.0007 (2/2978) 0 * * Os_TE_106906 Chr8 21703410 21703411 - ORSgTEMT00502214 125 0.8701 (2593/2980) 0 * * Os_TE_106888 Chr8 21696933 21696934 - INDITTO 263 0.0003 (1/2994) 0 * Os_TE_106887 Os_TE_106887 Chr8 21696931 21696930 - ORSgTETNOOT02417 265 0.0003 (1/2994) 0 * Os_TE_106888 Os_TE_106886 Chr8 21696784 21696785 - RIREX_LTR 8828 0.0007 (2/2987) 0 * Os_TE_106885 Os_TE_106885 Chr8 21696780 21696779 + RIREX_LTR 8828 0.0007 (2/2993) 0 * Os_TE_106886 Os_TE_106883 Chr8 21696283 21696284 - INDITTO 263 0.0024 (7/2973) 0 * Os_TE_106882 Os_TE_106882 Chr8 21696281 21696280 + INDITTO 263 0.0024 (7/2973) 0 * Os_TE_106883 Os_TE_106845 Chr8 21685011 21685012 + ORSgTEMT01601591 242 0.0003 (1/2991) 0 * * Os_TE_106814 Chr8 21672134 21682719 - ORSgTETN00200001 10994 0.1677 (475/2833) 1 Intact * Os_TE_106800 Chr8 21670084 21670085 - SZ-22_LTR 4403 0.0003 (1/2946) 0 * Os_TE_106799 Os_TE_106799 Chr8 21670080 21670079 + ORSiTERTOOT00226 792 0.0003 (1/2941) 0 * Os_TE_106800 Os_TE_106791 Chr8 21669331 21669332 + SPMLIKE 10989 0.5611 (1640/2923) 0 * Os_TE_106790 Os_TE_106790 Chr8 21669329 21669328 - ORSgTETN00200001 10994 0.5303 (1461/2755) 0 * Os_TE_106791 Os_TE_106789 Chr8 21668993 21668992 + ENSPM4_OS 11610 0.5682 (1699/2990) 0 * * Os_TE_106765 Chr8 21657717 21657718 + NDNA1TNA_OS 334 0.0027 (8/2996) 0 * Os_TE_106764 Os_TE_106764 Chr8 21657715 21657714 - NDNA1TNA_OS 334 0.0023 (7/2995) 0 * Os_TE_106765 Os_TE_106763 Chr8 21657697 21657698 - COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_106762 Os_TE_106762 Chr8 21657693 21657692 + COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_106763 Os_TE_106741 Chr8 21652652 21652651 + STOWAWAY51_OS 246 0.0104 (31/2991) 0 * Os_TE_106740 Os_TE_106740 Chr8 21652646 21652647 - STOWAWAY51_OS 246 0.0107 (32/2991) 0 * Os_TE_106741 Os_TE_106734 Chr8 21645908 21645548 + ORSgTEMT00600272 361 0.2359 (703/2980) 1 Intact * Os_TE_106667 Chr8 21614343 21614344 - CLOUD-4 520 0.0027 (8/2989) 0 * Os_TE_106666 Os_TE_106666 Chr8 21614335 21614334 + CLOUD-4 520 0.0023 (7/2988) 0 * Os_TE_106667 Os_TE_106661 Chr8 21611991 21611992 - COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * * Os_TE_106641 Chr8 21599744 21599745 - INDITTO 263 0.0037 (11/2959) 0 * Os_TE_106640 Os_TE_106640 Chr8 21599742 21599741 + INDITTO 263 0.0037 (11/2964) 0 * Os_TE_106641 Os_TE_106606 Chr8 21592600 21592599 + STOWAWAY51_OS 246 0.0003 (1/2993) 0 * Os_TE_106605 Os_TE_106605 Chr8 21592594 21592595 + ORSgTEMT01601591 242 0.0003 (1/2997) 0 * Os_TE_106606 Os_TE_106598 Chr8 21587526 21587525 - HARB-1_OS 5166 0.0010 (3/2987) 0 * Os_TE_106597 Os_TE_106597 Chr8 21587525 21587526 + HARB-1_OS 5166 0.0010 (3/2992) 0 * Os_TE_106598 Os_TE_106596 Chr8 21587364 21587363 - COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * * Os_TE_106595 Chr8 21587179 21587178 + ORSgTEMT01601591 242 0.0003 (1/2982) 0 * * Os_TE_106536 Chr8 21572853 21572852 + STOWAWAY13_OS 251 0.0003 (1/2981) 0 * * Os_TE_106526 Chr8 21562076 21562077 - COPI2_LTR 4733 0.0003 (1/2996) 0 * * Os_TE_106522 Chr8 21559485 21559486 + ORSgTERTOOT00009 12852 0.7364 (1869/2538) 0 * Os_TE_106521 Os_TE_106521 Chr8 21559481 21559480 - RETRO2_LTR 12874 0.7795 (2287/2934) 0 * Os_TE_106522 Os_TE_106509 Chr8 21554044 21554045 - ORSiTERTOOT00329 5144 0.7705 (2300/2985) 0 * Os_TE_106508 Os_TE_106508 Chr8 21554037 21554036 + ORSiTERTOOT00329 5144 0.7663 (2256/2944) 0 * Os_TE_106509 Os_TE_106500 Chr8 21549708 21549707 + ORSgTEMT01700610 148 0.0004 (1/2775) 0 * * Os_TE_106466 Chr8 21544825 21544826 + ORSgTEMT00500885 144 0.0003 (1/2935) 0 * * Os_TE_106451 Chr8 21542066 21542463 + OSTE9 421 0.2340 (693/2962) 1 Intact * Os_TE_106383 Chr8 21510958 21510959 + COPI2_LTR 4733 0.0010 (3/2968) 0 * Os_TE_106382 Os_TE_106382 Chr8 21510954 21510953 - COPI2_LTR 4733 0.0010 (3/2969) 0 * Os_TE_106383 Os_TE_106372 Chr8 21509400 21509399 + TELIA 141 0.0003 (1/2990) 0 * * Os_TE_106367 Chr8 21508421 21508420 + ORSgTETNOOT00908 242 0.0023 (7/2994) 0 * * Os_TE_106363 Chr8 21506045 21506046 + ORSiTERTOOT00296 5553 0.0003 (1/2984) 0 * Os_TE_106362 Os_TE_106362 Chr8 21506041 21506040 - SC-3_LTR 5748 0.0003 (1/2986) 0 * Os_TE_106363 Os_TE_106301 Chr8 21443235 21443236 - RIREX_LTR 8828 0.0007 (2/2984) 0 * Os_TE_106300 Os_TE_106300 Chr8 21443231 21443230 + RIREX_LTR 8828 0.0007 (2/2987) 0 * Os_TE_106301 Os_TE_106289 Chr8 21440872 21440871 - TREP215 239 0.0020 (6/2995) 0 * Os_TE_106288 Os_TE_106288 Chr8 21440869 21440870 + ORSgTEMT01602051 240 0.0020 (6/2996) 0 * Os_TE_106289 Os_TE_106284 Chr8 21438763 21438764 + ORSiCMCM00100019 2717 0.5616 (1549/2758) 0 * * Os_TE_106209 Chr8 21408768 21408769 - ORSgTERT00201216 11284 0.0004 (1/2843) 0 * Os_TE_106208 Os_TE_106208 Chr8 21408764 21408763 - RIRE2_LTR 11306 0.0007 (2/2989) 0 * Os_TE_106209 Os_TE_106207 Chr8 21408731 21408463 + ORSgTEMT06100010 269 0.1629 (486/2983) 1 Intact Os_TE_106204 Os_TE_106204 Chr8 21408463 21408731 - ORSgTEMT06100010 269 0.1652 (493/2984) 1 Intact Os_TE_106207 Os_TE_106180 Chr8 21393044 21393045 + TWIFB1 3737 0.0007 (2/2972) 0 * * Os_TE_106077 Chr8 21351406 21351407 + ORSgTEMT01601934 207 0.0022 (5/2291) 0 * * Os_TE_106076 Chr8 21351259 21351258 - ORSgTEMT01601696 238 0.0017 (5/2912) 0 * Os_TE_106075 Os_TE_106075 Chr8 21351256 21351257 - ORSgTEMT01601834 234 0.0017 (5/2908) 0 * Os_TE_106076 Os_TE_106066 Chr8 21340969 21340970 - SC-8_LTR 4951 0.0003 (1/2941) 0 * Os_TE_106065 Os_TE_106065 Chr8 21340965 21340964 + SC-8_LTR 4951 0.0003 (1/2940) 0 * Os_TE_106066 Os_TE_106062 Chr8 21339941 21339942 + ORSiTERTOOT00381 4988 0.0007 (2/2945) 0 * Os_TE_106061 Os_TE_106061 Chr8 21339937 21339936 - SC-8_LTR 4951 0.0007 (2/2943) 0 * Os_TE_106062 Os_TE_106053 Chr8 21337503 21337502 + OSTE1 801 0.0010 (3/2960) 0 * * Os_TE_105992 Chr8 21319438 21320573 - MDM2 312 0.1830 (548/2994) 1 Intact * Os_TE_105988 Chr8 21317632 21317633 + ORSgTETNOOT00670 249 0.5687 (1677/2949) 0 * * Os_TE_105969 Chr8 21312485 21312747 - INDITTO 263 0.1824 (546/2994) 1 Intact * Os_TE_105962 Chr8 21311660 21311661 - MERMITED 1572 0.0021 (6/2877) 0 * Os_TE_105961 Os_TE_105961 Chr8 21311658 21311657 - MERMITED 1572 0.0017 (5/2874) 0 * Os_TE_105962 Os_TE_105959 Chr8 21310605 21310604 - STOWAWAY51_OS 246 0.0006 (1/1712) -1 * * Os_TE_105934 Chr8 21303494 21303495 - MPING 430 0.0078 (23/2962) 0 * Os_TE_105933 Os_TE_105933 Chr8 21303492 21303491 + MPING 430 0.0084 (25/2967) 0 * Os_TE_105934 Os_TE_105858 Chr8 21286876 21286877 + TRUNCATOR2_LTR 2904 0.0013 (4/2964) 0 * * Os_TE_105844 Chr8 21283599 21283598 - MPING 430 0.0017 (5/2984) 0 * * Os_TE_105839 Chr8 21282962 21282963 - TRUNCATOR2_LTR 2904 0.0107 (32/2989) 0 * Os_TE_105838 Os_TE_105838 Chr8 21282958 21282957 + ORSiCMCM00100019 2717 0.0091 (27/2982) 0 * Os_TE_105839 Os_TE_105833 Chr8 21282608 21282609 - MPING 430 0.0080 (24/2996) 0 * Os_TE_105832 Os_TE_105832 Chr8 21282606 21282605 + MPING 430 0.0080 (24/2993) 0 * Os_TE_105833 Os_TE_105819 Chr8 21277318 21277319 + RIREX_LTR 8828 0.0003 (1/2998) 0 * Os_TE_105818 Os_TE_105818 Chr8 21277314 21277313 - RIREX_LTR 8828 0.0003 (1/2998) 0 * Os_TE_105819 Os_TE_105789 Chr8 21269047 21269048 + TREP215 239 0.0004 (1/2434) 0 * * Os_TE_105786 Chr8 21268475 21268476 - COPIA2-LTR_OS 6433 0.0020 (6/2989) 0 * Os_TE_105785 Os_TE_105785 Chr8 21268471 21268470 + COPIA2-LTR_OS 6433 0.0013 (4/2983) 0 * Os_TE_105786 Os_TE_105757 Chr8 21254683 21254684 + MICROPON-LIKE-2 102 0.1433 (259/1807) -1 * * Os_TE_105752 Chr8 21252475 21252476 - COPIA2-LTR_OS 6433 0.0003 (1/2963) 0 * Os_TE_105751 Os_TE_105751 Chr8 21252471 21252470 + COPIA2-LTR_OS 6433 0.0003 (1/2960) 0 * Os_TE_105752 Os_TE_105724 Chr8 21247771 21247770 - ORSgTEMT01400006 213 0.0020 (6/2962) 0 * * Os_TE_105716 Chr8 21244729 21244730 - HARB-1_OS 5166 0.0044 (13/2980) 0 * Os_TE_105715 Os_TE_105715 Chr8 21244727 21244726 + HARB-1_OS 5166 0.0047 (14/2977) 0 * Os_TE_105716 Os_TE_105707 Chr8 21244076 21244077 - INDITTO 263 0.6727 (2000/2973) 0 * Os_TE_105706 Os_TE_105706 Chr8 21244074 21244073 + INDITTO 263 0.6738 (2006/2977) 0 * Os_TE_105707 Os_TE_105663 Chr8 21233986 21233987 - CASLET 354 0.1194 (357/2990) 0 * Os_TE_105662 Os_TE_105662 Chr8 21233984 21233983 + CASLET 354 0.1168 (349/2988) 0 * Os_TE_105663 Os_TE_105652 Chr8 21229066 21229067 + ORSiCMCM00100019 2717 0.0003 (1/2986) 0 * Os_TE_105651 Os_TE_105651 Chr8 21229062 21229061 - TRUNCATOR2_LTR 2904 0.0003 (1/2983) 0 * Os_TE_105652 Os_TE_105641 Chr8 21226927 21226928 - RIRE2_LTR 11306 0.5520 (1604/2906) 0 * Os_TE_105640 Os_TE_105640 Chr8 21226923 21226922 + RIRE2_LTR 11306 0.5602 (1639/2926) 0 * Os_TE_105641 Os_TE_105624 Chr8 21220726 21220727 + ORSiCMCM00100019 2717 0.7708 (2176/2823) 0 * Os_TE_105623 Os_TE_105623 Chr8 21220722 21220721 - TRUNCATOR2_LTR 2904 0.7887 (2351/2981) 0 * Os_TE_105624 Os_TE_105616 Chr8 21217246 21217245 - COPIA2-LTR_OS 6433 0.0013 (4/2982) 0 * * Os_TE_105596 Chr8 21204865 21204604 - INDITTO 263 0.2217 (642/2896) 1 Intact Os_TE_105594 Os_TE_105594 Chr8 21204604 21204865 + INDITTO 263 0.2290 (665/2904) 1 Intact Os_TE_105596 Os_TE_105567 Chr8 21188287 21188288 + ORSgTETNOOT00221 261 0.7744 (2317/2992) 0 * * Os_TE_105513 Chr8 21165505 21165506 + TWIFB1 3737 0.0003 (1/2997) 0 * * Os_TE_105458 Chr8 21142811 21142810 + ORSgTEMT00900467 235 0.0007 (2/2904) 0 * * Os_TE_105456 Chr8 21142163 21142164 + SPMLIKE 10989 0.0003 (1/2996) 0 * Os_TE_105455 Os_TE_105455 Chr8 21142161 21142160 - SPMLIKE 10989 0.0003 (1/2997) 0 * Os_TE_105456 Os_TE_105444 Chr8 21139485 21139486 + SPMLIKE 10989 0.0004 (1/2692) 0 * Os_TE_105443 Os_TE_105443 Chr8 21139483 21139482 - ORSgTETN00200001 10994 0.0003 (1/2997) 0 * Os_TE_105444 Os_TE_105394 Chr8 21115683 21115682 - CLOUD 734 0.0011 (3/2851) 0 * * Os_TE_105354 Chr8 21104560 21104559 + ORSgTEMT01602181 239 0.0438 (130/2970) 0 * Os_TE_105353 Os_TE_105353 Chr8 21104557 21104558 + ORSgTEMT01602181 239 0.0472 (140/2969) 0 * Os_TE_105354 Os_TE_105342 Chr8 21103030 21103031 - NDNA2TNA_OS 346 0.6218 (1172/1885) 0 * * Os_TE_105340 Chr8 21103007 21102661 - NDNA2TNA_OS 346 0.3897 (726/1863) 1 Intact * Os_TE_105329 Chr8 21099413 21099414 + ORSiTERTOOT00226 792 0.0134 (40/2978) 0 * Os_TE_105328 Os_TE_105328 Chr8 21099409 21099408 + ORSiTERTOOT00226 792 0.0134 (40/2981) 0 * Os_TE_105329 Os_TE_105326 Chr8 21098353 21098354 + COPIA2-LTR_OS 6433 0.0003 (1/2962) 0 * Os_TE_105325 Os_TE_105325 Chr8 21098349 21098348 - COPIA2-LTR_OS 6433 0.0003 (1/2927) 0 * Os_TE_105326 Os_TE_105324 Chr8 21096973 21096972 - UNIQUE 158 0.0003 (1/2994) 0 * * Os_TE_105321 Chr8 21095246 21095247 - ORSgTEMT00101335 160 0.0003 (1/2988) 0 * * Os_TE_105313 Chr8 21092658 21092659 + ORSiTERTOOT00296 5553 0.0007 (2/2997) 0 * Os_TE_105312 Os_TE_105312 Chr8 21092654 21092653 - SC-3_LTR 5748 0.0007 (2/2999) 0 * Os_TE_105313 Os_TE_105306 Chr8 21087007 21087006 + ORSgTETNOOT01834 251 0.0010 (3/2927) 0 * * Os_TE_105296 Chr8 21083126 21083127 - CLOUD 734 0.0020 (6/2957) 0 * Os_TE_105295 Os_TE_105295 Chr8 21083121 21083120 - CLOUD 734 0.0020 (6/2961) 0 * Os_TE_105296 Os_TE_105287 Chr8 21082761 21082552 + ORSgTEMT01400003 213 0.2398 (699/2915) 1 Intact * Os_TE_105259 Chr8 21071914 21071915 + SZ-44LTR 1408 0.0021 (6/2853) 0 * * Os_TE_105247 Chr8 21067451 21067452 + RETRO2A_LTR 12895 0.1080 (321/2971) 0 * Os_TE_105246 Os_TE_105246 Chr8 21067447 21067446 - RETRO1_LTR 8314 0.1128 (337/2987) 0 * Os_TE_105247 Os_TE_105244 Chr8 21066572 21066571 - CACTA-B 1103 0.0980 (289/2948) 0 * Os_TE_105243 Os_TE_105243 Chr8 21066571 21066572 + SPMLIKE 10989 0.1138 (340/2988) 0 * Os_TE_105244 Os_TE_105241 Chr8 21065889 21065890 - SZ-48LTR 3632 0.0020 (6/2982) 0 * Os_TE_105240 Os_TE_105240 Chr8 21065885 21065884 + SZ-48LTR 3632 0.0020 (6/2986) 0 * Os_TE_105241 Os_TE_105193 Chr8 21050146 21050147 + STOWAWAY17_OS 259 0.0003 (1/2970) 0 * * Os_TE_105177 Chr8 21041390 21041389 - STOWAWAY51_OS 246 0.0870 (257/2953) 0 * * Os_TE_105168 Chr8 21040409 21040408 + STOWAWAY51_OS 246 0.0003 (1/2868) 0 * * Os_TE_105157 Chr8 21038843 21038844 + SZ-9LTR 965 0.0003 (1/2958) 0 * Os_TE_105156 Os_TE_105156 Chr8 21038839 21038838 - SZ-9LTR 965 0.0003 (1/2960) 0 * Os_TE_105157 Os_TE_105124 Chr8 21031735 21031736 - RETRO2_LTR 12874 0.1645 (485/2948) 0 * Os_TE_105123 Os_TE_105123 Chr8 21031731 21031730 + RETRO2_LTR 12874 0.1636 (482/2946) 0 * Os_TE_105124 Os_TE_105121 Chr8 21031300 21031299 + ENSPM6_OS 9815 0.5364 (1533/2858) 0 * * Os_TE_105118 Chr8 21030810 21030811 + CACTA-M 1129 0.0017 (5/2967) 0 * Os_TE_105117 Os_TE_105117 Chr8 21030808 21030807 - ORSgTETN00200001 10994 0.0017 (5/2967) 0 * Os_TE_105118 Os_TE_105103 Chr8 21025072 21025071 - STOWAWAY51_OS 246 0.0003 (1/2990) 0 * Os_TE_105102 Os_TE_105102 Chr8 21025066 21025067 + STOWAWAY51_OS 246 0.0003 (1/2991) 0 * Os_TE_105103 Os_TE_105088 Chr8 21018810 21018811 - SC-8_LTR 4951 0.0007 (2/2967) 0 * Os_TE_105087 Os_TE_105087 Chr8 21018806 21018805 + SC-8_LTR 4951 0.0007 (2/2962) 0 * Os_TE_105088 Os_TE_105084 Chr8 21017095 21017096 - COPI2_LTR 4733 0.0007 (2/2992) 0 * Os_TE_105083 Os_TE_105083 Chr8 21017091 21017090 + COPI2_LTR 4733 0.0007 (2/2992) 0 * Os_TE_105084 Os_TE_105068 Chr8 21008673 21008674 + RIREX_LTR 8828 0.0007 (2/2971) 0 * Os_TE_105067 Os_TE_105067 Chr8 21008669 21008668 - RIREX_LTR 8828 0.0007 (2/2967) 0 * Os_TE_105068 Os_TE_105066 Chr8 21008011 21008010 + ORSgTETNOOT00032 218 0.1488 (429/2883) 0 * * Os_TE_105064 Chr8 21006863 21006864 + DS-RICE4N 715 0.0018 (5/2802) 0 * Os_TE_105063 Os_TE_105063 Chr8 21006856 21006855 - DS-RICE2N 613 0.0014 (4/2772) 0 * Os_TE_105064 Os_TE_105062 Chr8 21006686 21006687 - MPING 430 0.0054 (16/2953) 0 * Os_TE_105061 Os_TE_105061 Chr8 21006684 21006683 + MPING 430 0.0059 (17/2871) 0 * Os_TE_105062 Os_TE_105056 Chr8 21005391 21005392 + RETRO2A_LTR 12895 0.0017 (5/2986) 0 * Os_TE_105055 Os_TE_105055 Chr8 21005387 21005386 - RETRO2_LTR 12874 0.0017 (5/2989) 0 * Os_TE_105056 Os_TE_105052 Chr8 21002492 21002493 + SC-8_LTR 4951 0.0007 (2/2993) 0 * Os_TE_105051 Os_TE_105051 Chr8 21002488 21002487 - SC-8_LTR 4951 0.0007 (2/2990) 0 * Os_TE_105052 Os_TE_105014 Chr8 20991942 20991943 + ORSiTETNOOT00107 906 0.0061 (18/2962) 0 * * Os_TE_104976 Chr8 20972811 20972812 + RETRO1_LTR 8314 0.0007 (2/2991) 0 * * Os_TE_104973 Chr8 20972534 20972535 - ORSgTEMT01600650 234 0.3661 (1076/2939) 0 * Os_TE_104972 Os_TE_104972 Chr8 20972531 20972530 - ORSgTEMT01601696 238 0.3734 (1109/2970) 0 * Os_TE_104973 Os_TE_104971 Chr8 20972528 20972529 + ORSgTEMT01601934 207 0.3678 (1079/2934) 0 * * Os_TE_104930 Chr8 20968084 20968085 + RIREX_LTR 8828 0.0007 (2/2953) 0 * Os_TE_104929 Os_TE_104929 Chr8 20968080 20968079 - RIREX_LTR 8828 0.0007 (2/2953) 0 * Os_TE_104930 Os_TE_104921 Chr8 20967154 20967153 - OSTE15 1168 0.0003 (1/2934) 0 * * Os_TE_104919 Chr8 20966956 20948756 + OSMUD1 5028 0.1380 (400/2899) 1 Intact Os_TE_104912 Os_TE_104912 Chr8 20948756 20966956 - OSMUD1 5028 0.1375 (401/2917) 1 Intact Os_TE_104919 Os_TE_104911 Chr8 20948474 20948475 - CASTAWAY 364 0.1541 (444/2882) 0 * Os_TE_104910 Os_TE_104910 Chr8 20948473 20948472 + ORSgTEMT00600192 355 0.1487 (429/2885) 0 * Os_TE_104911 Os_TE_104891 Chr8 20940523 20940522 + KRISPIE 956 0.0175 (52/2976) 0 * Os_TE_104890 Os_TE_104890 Chr8 20940522 20940523 - KRISPIE 956 0.0168 (50/2980) 0 * Os_TE_104891 Os_TE_104884 Chr8 20939824 20939825 + KRISPIE 956 0.0004 (1/2720) 0 * Os_TE_104883 Os_TE_104883 Chr8 20939819 20939818 - ORSiTEMT01300001 950 0.0003 (1/2870) 0 * Os_TE_104884 Os_TE_104882 Chr8 20939769 20939770 - COPI2_LTR 4733 0.5280 (1573/2979) 0 * Os_TE_104881 Os_TE_104881 Chr8 20939764 20939763 + COPI2_LTR 4733 0.4988 (1426/2859) 0 * Os_TE_104882 Os_TE_104867 Chr8 20936051 20936052 + COPI2_LTR 4733 0.0004 (1/2741) 0 * * Os_TE_104866 Chr8 20935897 20935898 - CACTA-M 1129 0.0143 (42/2930) 0 * Os_TE_104865 Os_TE_104865 Chr8 20935895 20935894 + CACTA-M 1129 0.0147 (43/2931) 0 * Os_TE_104866 Os_TE_104858 Chr8 20932958 20932959 - RIREX_LTR 8828 0.1537 (457/2973) 0 * Os_TE_104857 Os_TE_104857 Chr8 20932954 20932953 + RIREX_LTR 8828 0.1551 (462/2979) 0 * Os_TE_104858 Os_TE_104843 Chr8 20930225 20930224 + STOWAWAY51_OS 246 0.0017 (5/2992) 0 * Os_TE_104842 Os_TE_104842 Chr8 20930219 20930220 + ORSgTEMT01601591 242 0.0017 (5/2993) 0 * Os_TE_104843 Os_TE_104841 Chr8 20930103 20930104 + ORSgTETNOOT01668 244 0.0003 (1/2986) 0 * * Os_TE_104828 Chr8 20923194 20923195 + STOWAWAY51_OS 246 0.0003 (1/2983) 0 * * Os_TE_104813 Chr8 20918873 20907594 - ORSgTETN00200001 10994 0.1201 (354/2948) 1 Intact Os_TE_104809 Os_TE_104809 Chr8 20907594 20918873 + SPMLIKE 10989 0.1330 (396/2977) 1 Intact Os_TE_104813 Os_TE_104806 Chr8 20903589 20903590 - SC-8_LTR 4951 0.0007 (2/2988) 0 * Os_TE_104805 Os_TE_104805 Chr8 20903585 20903584 + SC-8_LTR 4951 0.0007 (2/2987) 0 * Os_TE_104806 Os_TE_104777 Chr8 20892350 20892351 + MDR2 6967 0.0204 (53/2599) 0 * Os_TE_104776 Os_TE_104776 Chr8 20892341 20892340 - MDR2 6967 0.0203 (53/2612) 0 * Os_TE_104777 Os_TE_104773 Chr8 20890857 20890858 + ORSgTEMT00600272 361 0.1124 (336/2989) 0 * * Os_TE_104763 Chr8 20887961 20887962 - LINE-6_OS 4886 0.0011 (3/2706) 0 * * Os_TE_104752 Chr8 20884613 20884614 - SC-8_LTR 4951 0.0003 (1/2989) 0 * Os_TE_104751 Os_TE_104751 Chr8 20884609 20884608 + SC-8_LTR 4951 0.0003 (1/2989) 0 * Os_TE_104752 Os_TE_104750 Chr8 20882862 20882861 - ORSgTEMT02400179 221 0.0027 (8/2994) 0 * * Os_TE_104718 Chr8 20863154 20863155 - RETROSAT3_LTR 11537 0.0010 (1/1052) 0 * * Os_TE_104703 Chr8 20854756 20854757 + OSTE33 1012 0.0174 (52/2994) 0 * Os_TE_104702 Os_TE_104702 Chr8 20854747 20854746 + OSTE33 1012 0.0187 (56/2995) 0 * Os_TE_104703 Os_TE_104688 Chr8 20847051 20847050 - ORSgTEMT00500205 140 0.0007 (2/2956) 0 * * Os_TE_104634 Chr8 20830377 20830378 + NDNA2TNA_OS 346 0.0020 (6/2994) 0 * Os_TE_104633 Os_TE_104633 Chr8 20830375 20830374 - NDNA2TNA_OS 346 0.0020 (6/2996) 0 * Os_TE_104634 Os_TE_104587 Chr8 20808144 20808145 - GYPSY-A_LTR 8951 0.0020 (6/2962) 0 * * Os_TE_104583 Chr8 20807074 20807073 + TRUNCATOR 2918 0.0007 (2/2991) 0 * * Os_TE_104581 Chr8 20807065 20807064 + RIREX_LTR 8828 0.0198 (59/2987) 0 * * Os_TE_104566 Chr8 20801954 20801955 + MERMITEA 1710 0.0023 (7/2991) 0 * Os_TE_104565 Os_TE_104565 Chr8 20801946 20801945 - MERMITEA 1710 0.0023 (7/2990) 0 * Os_TE_104566 Os_TE_104559 Chr8 20795992 20795993 + RIREX_LTR 8828 0.0204 (60/2934) 0 * Os_TE_104558 Os_TE_104558 Chr8 20795988 20795987 - RIREX_LTR 8828 0.0204 (60/2939) 0 * Os_TE_104559 Os_TE_104539 Chr8 20789679 20789678 - SZ-44LTR 1408 0.2359 (553/2344) 0 * * Os_TE_104502 Chr8 20775050 20775051 - SC-3_LTR 5748 0.0003 (1/2993) 0 * Os_TE_104501 Os_TE_104501 Chr8 20775046 20775045 + ORSiTERTOOT00296 5553 0.0003 (1/2995) 0 * Os_TE_104502 Os_TE_104496 Chr8 20771776 20766564 - SZ-62LTR 3649 0.3666 (1098/2995) 1 Intact * Os_TE_104492 Chr8 20765381 20765382 - ORSgTEMT02000040 196 0.4276 (1275/2982) 0 * * Os_TE_104489 Chr8 20765077 20765078 + RIREX_LTR 8828 0.0003 (1/2990) 0 * Os_TE_104488 Os_TE_104488 Chr8 20765073 20765072 - RIREX_LTR 8828 0.0003 (1/2990) 0 * Os_TE_104489 Os_TE_104484 Chr8 20764266 20764267 + TNR2A 152 0.0215 (60/2785) 0 * * Os_TE_104463 Chr8 20756223 20756222 - SINE9_OS 293 0.6462 (1901/2942) 0 * * Os_TE_104431 Chr8 20746913 20746914 + EnSpm-10_OS 11265 0.0010 (3/2971) 0 * * Os_TE_104415 Chr8 20723112 20723113 + ORSgTEMT00300064 397 0.3976 (1173/2950) 0 * * Os_TE_104406 Chr8 20720873 20720874 + COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * Os_TE_104405 Os_TE_104405 Chr8 20720869 20720868 - COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_104406 Os_TE_104350 Chr8 20706240 20706239 - NDNA2TNA_OS 346 0.0007 (2/2994) 0 * * Os_TE_104331 Chr8 20704375 20704376 + AMYLTP 383 0.0090 (27/2985) 0 * * Os_TE_104323 Chr8 20702794 20702793 - COPIA2-LTR_OS 6433 0.0005 (1/2175) 0 * * Os_TE_104316 Chr8 20700110 20700109 - ORSgTEMT01600639 228 0.0020 (6/2996) 0 * Os_TE_104315 Os_TE_104315 Chr8 20700107 20700108 - ORSgTEMT01601208 238 0.0017 (5/2991) 0 * Os_TE_104316 Os_TE_104314 Chr8 20700027 20700028 + COPIA2-LTR_OS 6433 0.0013 (4/2992) 0 * Os_TE_104313 Os_TE_104313 Chr8 20700023 20700022 - COPIA2-LTR_OS 6433 0.0013 (4/2995) 0 * Os_TE_104314 Os_TE_104297 Chr8 20695916 20695917 + MPING 430 0.0070 (21/2985) 0 * Os_TE_104296 Os_TE_104296 Chr8 20695914 20695913 - MPING 430 0.0073 (22/2996) 0 * Os_TE_104297 Os_TE_104294 Chr8 20695285 20695286 + RIREX_LTR 8828 0.0329 (98/2983) 0 * Os_TE_104293 Os_TE_104293 Chr8 20695281 20695280 - RIREX_LTR 8828 0.0328 (98/2988) 0 * Os_TE_104294 Os_TE_104282 Chr8 20692689 20692690 + JOUZHENA 607 0.0074 (22/2965) 0 * Os_TE_104281 Os_TE_104281 Chr8 20692682 20692681 - JOUZHENA 607 0.0074 (22/2993) 0 * Os_TE_104282 Os_TE_104255 Chr8 20686591 20686592 + SPMLIKE 10989 0.0165 (49/2974) 0 * Os_TE_104254 Os_TE_104254 Chr8 20686589 20686588 - ORSgTETN00200001 10994 0.0165 (49/2973) 0 * Os_TE_104255 Os_TE_104235 Chr8 20681190 20681191 - TYPEM 227 0.0011 (3/2824) 0 * * Os_TE_104193 Chr8 20674666 20674237 - MPING 430 0.0166 (47/2826) 1 Intact Os_TE_104192 Os_TE_104192 Chr8 20674237 20674666 + MPING 430 0.0167 (48/2867) 1 Intact Os_TE_104193 Os_TE_104190 Chr8 20674157 20674158 - STOLAB 312 0.0017 (5/2880) 0 * Os_TE_104189 Os_TE_104189 Chr8 20674155 20674154 + STOLAB 312 0.0021 (6/2878) 0 * Os_TE_104190 Os_TE_104179 Chr8 20666454 20666455 - COPI2_LTR 4733 0.0003 (1/2990) 0 * * Os_TE_104155 Chr8 20656644 20656645 - MPING 430 0.0003 (1/2964) 0 * Os_TE_104154 Os_TE_104154 Chr8 20656642 20656641 + MPING 430 0.0003 (1/2988) 0 * Os_TE_104155 Os_TE_104151 Chr8 20655938 20655939 + AMYLTP 383 0.0010 (3/2985) 0 * Os_TE_104150 Os_TE_104150 Chr8 20655930 20655929 - AMYLTP 383 0.0010 (3/2986) 0 * Os_TE_104151 Os_TE_104137 Chr8 20652844 20652845 - OSTE24 683 0.0017 (5/2977) 0 * * Os_TE_104126 Chr8 20649981 20649982 - ORSgTEMT01602443 235 0.0664 (199/2995) 0 * Os_TE_104125 Os_TE_104125 Chr8 20649979 20649978 + ORSgTEMT01601934 207 0.0655 (196/2991) 0 * Os_TE_104126 Os_TE_104111 Chr8 20644816 20644817 + RIREX_LTR 8828 0.0003 (1/2988) 0 * Os_TE_104110 Os_TE_104110 Chr8 20644812 20644811 - RIREX_LTR 8828 0.0003 (1/2983) 0 * Os_TE_104111 Os_TE_104108 Chr8 20644610 20644609 - COPI2_LTR 4733 0.0003 (1/2987) 0 * * Os_TE_104104 Chr8 20639123 20639124 + FOCUS 257 0.0491 (145/2953) 0 * Os_TE_104103 Os_TE_104103 Chr8 20639121 20639120 - FOCUS 257 0.0489 (145/2966) 0 * Os_TE_104104 Os_TE_104097 Chr8 20638572 20638571 + RIRE2_LTR 11306 0.0017 (5/2884) 0 * * Os_TE_104095 Chr8 20636007 20636008 + RIREX_LTR 8828 0.0003 (1/2978) 0 * Os_TE_104094 Os_TE_104094 Chr8 20636003 20636002 - RIREX_LTR 8828 0.0003 (1/2974) 0 * Os_TE_104095 Os_TE_104093 Chr8 20635448 20635449 + MPING 430 0.0003 (1/2983) 0 * * Os_TE_104091 Chr8 20635227 20635228 - MPING 430 0.0007 (2/2973) 0 * Os_TE_104090 Os_TE_104090 Chr8 20635225 20635224 + MPING 430 0.0007 (2/2975) 0 * Os_TE_104091 Os_TE_104089 Chr8 20634130 20634131 + ORSiTERTOOT00074 4935 0.0020 (6/2933) 0 * Os_TE_104088 Os_TE_104088 Chr8 20634126 20634125 - ORSiTERTOOT00074 4935 0.0020 (6/2927) 0 * Os_TE_104089 Os_TE_104086 Chr8 20632209 20632210 - DS-RICE2N 613 0.0048 (14/2889) 0 * Os_TE_104085 Os_TE_104085 Chr8 20632202 20632201 + DS-RICE4N 715 0.0048 (14/2891) 0 * Os_TE_104086 Os_TE_104019 Chr8 20612740 20612741 - RIREX_LTR 8828 0.3737 (1116/2986) 0 * Os_TE_104018 Os_TE_104018 Chr8 20612738 20612737 + RIREX_LTR 8828 0.3715 (1110/2988) 0 * Os_TE_104019 Os_TE_104005 Chr8 20610556 20610654 - ORSiTEMT00200004 104 0.7432 (2174/2925) 1 Intact * Os_TE_103989 Chr8 20604394 20604395 + DS-RICE3N 525 0.3650 (1052/2882) 0 * * Os_TE_103986 Chr8 20604333 20604332 + RIREX_LTR 8828 0.0007 (2/2847) 0 * * Os_TE_103977 Chr8 20597764 20597765 + RIREX_LTR 8828 0.0004 (1/2795) 0 * * Os_TE_103946 Chr8 20589979 20589978 + SC-8_LTR 4951 0.3657 (1087/2972) 0 * * Os_TE_103945 Chr8 20589858 20589859 + RIREX_LTR 8828 0.0003 (1/2977) 0 * * Os_TE_103913 Chr8 20575575 20575576 + COPIA2-LTR_OS 6433 0.0003 (1/2986) 0 * Os_TE_103912 Os_TE_103912 Chr8 20575571 20575570 - COPIA2-LTR_OS 6433 0.0003 (1/2983) 0 * Os_TE_103913 Os_TE_103909 Chr8 20575090 20575091 - AMYLTP 383 0.0015 (4/2718) 0 * * Os_TE_103898 Chr8 20572971 20572970 - STOWAWAY51_OS 246 0.0098 (29/2969) 0 * Os_TE_103897 Os_TE_103897 Chr8 20572965 20572966 + STOWAWAY51_OS 246 0.0105 (31/2966) 0 * Os_TE_103898 Os_TE_103891 Chr8 20571193 20571194 + GYPSY-A_LTR 8951 0.0133 (40/2998) 0 * Os_TE_103890 Os_TE_103890 Chr8 20571189 20571188 - GYPSY-A_LTR 8951 0.0130 (39/2997) 0 * Os_TE_103891 Os_TE_103866 Chr8 20559230 20559231 + TWIF 586 0.0003 (1/2932) 0 * Os_TE_103865 Os_TE_103865 Chr8 20559223 20559222 - ORSiTETNOOT00134 607 0.0003 (1/2940) 0 * Os_TE_103866 Os_TE_103833 Chr8 20548941 20548940 - AMYLTP 383 0.0019 (5/2581) 0 * * Os_TE_103816 Chr8 20538555 20538556 + ORSiTERTOOT00226 792 0.0003 (1/2964) 0 * * Os_TE_103739 Chr8 20508465 20508464 - TELIA 141 0.1496 (438/2928) 0 * * Os_TE_103732 Chr8 20505977 20505978 + COPIA2-LTR_OS 6433 0.0003 (1/2984) 0 * Os_TE_103731 Os_TE_103731 Chr8 20505973 20505972 - COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * Os_TE_103732 Os_TE_103595 Chr8 20466101 20466102 - ORSgTEMT00900198 245 0.0035 (9/2601) 0 * * Os_TE_103580 Chr8 20458199 20458198 + MuDR2_OS 6770 0.0007 (2/2981) 0 * * Os_TE_103565 Chr8 20455895 20455896 - COPIA2-LTR_OS 6433 0.0003 (1/2972) 0 * Os_TE_103564 Os_TE_103564 Chr8 20455891 20455890 + COPIA2-LTR_OS 6433 0.0003 (1/2967) 0 * Os_TE_103565 Os_TE_103557 Chr8 20454123 20454124 - COPI2_LTR 4733 0.0003 (1/2986) 0 * * Os_TE_103548 Chr8 20452603 20452604 + BAJIELTR 4500 0.0024 (7/2971) 0 * * Os_TE_103527 Chr8 20445017 20445153 - ORSgTETNOOT01930 140 0.8913 (2484/2787) 1 Intact * Os_TE_103521 Chr8 20443445 20443446 - ORSgTEMT00101174 225 0.0007 (2/2910) 0 * * Os_TE_103520 Chr8 20443078 20442863 - ORSgTEMT02400179 221 0.8760 (2600/2968) 1 Intact * Os_TE_103519 Chr8 20442845 20442416 - MPING 430 0.0101 (26/2578) 1 Intact Os_TE_103518 Os_TE_103518 Chr8 20442416 20442845 + MPING 430 0.0087 (26/2977) 1 Intact Os_TE_103519 Os_TE_103504 Chr8 20435563 20435369 - ORSgTEMT02000040 196 0.8824 (2505/2839) 1 Intact Os_TE_103501 Os_TE_103501 Chr8 20435330 20435564 - WANDERER 232 0.8879 (2519/2837) 1 Intact Os_TE_103504 Os_TE_103499 Chr8 20435308 20435309 - TRUNCATOR 2918 0.0142 (41/2884) 0 * * Os_TE_103497 Chr8 20435193 20435039 + ORSgTEMT01701591 154 0.8804 (2555/2902) 1 Intact * Os_TE_103494 Chr8 20434116 20434115 - STOWAWAY32_OS 261 0.0020 (6/2958) 0 * Os_TE_103493 Os_TE_103493 Chr8 20434115 20434116 + STOWAWAY45_OS 266 0.0020 (6/2963) 0 * Os_TE_103494 Os_TE_103492 Chr8 20433003 20433004 + COPI2_LTR 4733 0.0007 (2/2976) 0 * Os_TE_103491 Os_TE_103491 Chr8 20432999 20432998 - COPI2_LTR 4733 0.0013 (4/2985) 0 * Os_TE_103492 Os_TE_103480 Chr8 20427631 20427632 - GYPSY-A_LTR 8951 0.0681 (204/2995) 0 * Os_TE_103479 Os_TE_103479 Chr8 20427627 20427626 + GYPSY-A_LTR 8951 0.0658 (197/2995) 0 * Os_TE_103480 Os_TE_103442 Chr8 20413582 20413583 + ORSiTERTOOT00296 5553 0.0003 (1/2995) 0 * Os_TE_103441 Os_TE_103441 Chr8 20413578 20413577 - SC-3_LTR 5748 0.0003 (1/2994) 0 * Os_TE_103442 Os_TE_103415 Chr8 20393444 20393445 - SC-8_LTR 4951 0.0003 (1/2954) 0 * Os_TE_103414 Os_TE_103414 Chr8 20393440 20393439 + SC-8_LTR 4951 0.0003 (1/2953) 0 * Os_TE_103415 Os_TE_103413 Chr8 20392334 20392335 + SC-8_LTR 4951 0.0003 (1/2983) 0 * Os_TE_103412 Os_TE_103412 Chr8 20392330 20392329 - SC-8_LTR 4951 0.0003 (1/2974) 0 * Os_TE_103413 Os_TE_103410 Chr8 20389379 20389380 + ORSiTERTOOT00296 5553 0.0007 (2/2994) 0 * Os_TE_103409 Os_TE_103409 Chr8 20389375 20389374 - SC-3_LTR 5748 0.0007 (2/2990) 0 * Os_TE_103410 Os_TE_103405 Chr8 20387605 20387606 - SC-8_LTR 4951 0.0003 (1/2994) 0 * * Os_TE_103366 Chr8 20370087 20370088 - MuDR4_OS 7610 0.0011 (3/2642) 0 * Os_TE_103365 Os_TE_103365 Chr8 20370081 20370080 - MuDR4_OS 7610 0.0015 (4/2682) 0 * Os_TE_103366 Os_TE_103354 Chr8 20366554 20366555 - NDNA1TNA_OS 334 0.0013 (3/2300) 0 * Os_TE_103353 Os_TE_103353 Chr8 20366552 20366551 + NDNA1TNA_OS 334 0.0014 (3/2184) 0 * Os_TE_103354 Os_TE_103321 Chr8 20348314 20348313 - RIRE2_LTR 11306 0.0488 (146/2993) 0 * * Os_TE_103316 Chr8 20347604 20336092 + ENSPM4_OS 11610 0.0338 (100/2956) 1 Intact Os_TE_103314 Os_TE_103314 Chr8 20336092 20347603 - ENSPM4_OS 11610 0.0354 (105/2965) 1 Intact Os_TE_103316 Os_TE_103311 Chr8 20335600 20318011 - MDR2 6967 0.0399 (108/2705) 1 Intact Os_TE_103302 Os_TE_103302 Chr8 20318008 20335600 + MDR2 6967 0.0394 (107/2718) 1 Intact Os_TE_103311 Os_TE_103295 Chr8 20316753 20316754 + DS-RICE4N 715 0.0058 (17/2930) 0 * Os_TE_103294 Os_TE_103294 Chr8 20316746 20316745 - DS-RICE2N 613 0.0058 (17/2932) 0 * Os_TE_103295 Os_TE_103280 Chr8 20312279 20312278 + TRUNCATOR 2918 0.0401 (120/2989) 0 * * Os_TE_103279 Chr8 20311300 20311301 + COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_103278 Os_TE_103278 Chr8 20311296 20311295 - COPIA2-LTR_OS 6433 0.0004 (1/2719) 0 * Os_TE_103279 Os_TE_103269 Chr8 20306471 20306472 + SPMLIKE 10989 0.0017 (5/2980) 0 * * Os_TE_103205 Chr8 20263806 20263807 - RIREX_LTR 8828 0.0005 (1/2185) 0 * * Os_TE_103132 Chr8 20226427 20226428 - ORSgTEMT00501581 147 0.0003 (1/2995) 0 * * Os_TE_103130 Chr8 20223801 20223802 + TWIF 586 0.0343 (89/2595) 0 * * Os_TE_103111 Chr8 20222020 20222019 + ORSgTEMT00501108 146 0.1088 (293/2693) 0 * * Os_TE_103103 Chr8 20213198 20213199 + ORSiTERTOOT00296 5553 0.0003 (1/2985) 0 * Os_TE_103102 Os_TE_103102 Chr8 20213194 20213193 - SC-3_LTR 5748 0.0003 (1/2985) 0 * Os_TE_103103 Os_TE_103051 Chr8 20198999 20198998 - OSTE21 1271 0.0007 (2/2995) 0 * * Os_TE_103050 Chr8 20198397 20198398 - RIREX_LTR 8828 0.2447 (719/2938) 0 * * Os_TE_103041 Chr8 20193905 20193906 - DITTO-2 235 0.8035 (2372/2952) 0 * * Os_TE_103034 Chr8 20192717 20192716 + CASGRANDA 465 0.1604 (454/2831) 0 * * Os_TE_103014 Chr8 20168123 20168124 - ORSiTETNOOT00216 3569 0.0181 (12/664) 0 * * Os_TE_103011 Chr8 20167698 20167472 - COWARD 200 0.1787 (482/2697) 1 Intact * Os_TE_103005 Chr8 20167096 20167370 - STOLAB 312 0.3103 (655/2111) 1 Intact * Os_TE_103003 Chr8 20165851 20165852 - INDITTO 263 0.0007 (2/2936) 0 * * Os_TE_103000 Chr8 20164369 20164368 + F804 170 0.8424 (2395/2843) 0 * * Os_TE_102992 Chr8 20162449 20162450 + F569 228 0.0474 (138/2914) 0 * * Os_TE_102986 Chr8 20160384 20160383 + TREP215 239 0.7422 (1773/2389) 0 * * Os_TE_102977 Chr8 20158282 20158281 - ORSgTEMT01701266 154 0.0583 (162/2779) 0 * * Os_TE_102976 Chr8 20158279 20158280 - ORSgTEMT01700299 212 0.0552 (153/2773) 0 * Os_TE_102975 Os_TE_102975 Chr8 20158275 20158274 - ORSgTEMT01701082 147 0.0566 (157/2772) 0 * Os_TE_102976 Os_TE_102973 Chr8 20157863 20157864 + ORSgTEMT01701755 160 0.0559 (166/2969) 0 * * Os_TE_102970 Chr8 20155870 20155869 + F770 284 0.0439 (131/2984) 0 * * Os_TE_102969 Chr8 20155630 20155484 + ORSgTEMT00501027 149 0.2118 (634/2994) 1 Intact Os_TE_102968 Os_TE_102968 Chr8 20155482 20155630 + ORSgTEMT00501455 153 0.2105 (630/2993) 1 Intact Os_TE_102969 Os_TE_102967 Chr8 20155414 20155415 - TYPEM 227 0.0305 (91/2986) 0 * * Os_TE_102965 Chr8 20155110 20155111 + RETRO2_LTR 12874 0.0556 (134/2409) 0 * Os_TE_102964 Os_TE_102964 Chr8 20155106 20155105 - RETRO2_LTR 12874 0.0428 (128/2991) 0 * Os_TE_102965 Os_TE_102963 Chr8 20155033 20155034 - ORSgTEMT00700002 381 0.7985 (2358/2953) 0 * * Os_TE_102952 Chr8 20147643 20147644 + ORSgTETNOOT00032 218 0.0303 (90/2969) 0 * * Os_TE_102945 Chr8 20146547 20146880 - NDNA1TNA_OS 334 0.0789 (225/2850) 1 Intact * Os_TE_102923 Chr8 20142510 20142511 + RIREX_LTR 8828 0.0013 (4/2971) 0 * Os_TE_102922 Os_TE_102922 Chr8 20142506 20142505 - RIREX_LTR 8828 0.0013 (4/2981) 0 * Os_TE_102923 Os_TE_102915 Chr8 20141146 20141147 - ORSiTEMT01000008 242 0.8552 (2540/2970) 0 * * Os_TE_102910 Chr8 20139726 20139725 + OsSN3 183 0.1347 (392/2910) 0 * * Os_TE_102903 Chr8 20138548 20138549 + CACTA-M 1129 0.0023 (7/2988) 0 * Os_TE_102902 Os_TE_102902 Chr8 20138546 20138545 - CACTA-M 1129 0.0017 (5/2986) 0 * Os_TE_102903 Os_TE_102898 Chr8 20135199 20135198 - ORSgTEMT02400179 221 0.7858 (2274/2894) 0 * Os_TE_102897 Os_TE_102897 Chr8 20135195 20135196 + ORSgTEMT02400041 225 0.7874 (2255/2864) 0 * Os_TE_102898 Os_TE_102895 Chr8 20134618 20134619 - OSTE24 683 0.0010 (3/2907) 0 * Os_TE_102894 Os_TE_102894 Chr8 20134608 20134607 - OSTE24 683 0.0010 (3/2947) 0 * Os_TE_102895 Os_TE_102893 Chr8 20134186 20134185 - STOWAWAY51_OS 246 0.0815 (241/2956) 0 * Os_TE_102892 Os_TE_102892 Chr8 20134180 20134181 + STOWAWAY51_OS 246 0.0778 (230/2958) 0 * Os_TE_102893 Os_TE_102891 Chr8 20134012 20133775 + ORSgTEMT01600662 238 0.1213 (360/2967) 1 Intact Os_TE_102889 Os_TE_102889 Chr8 20133775 20134012 + ORSgTEMT01602051 240 0.1251 (372/2974) 1 Intact Os_TE_102891 Os_TE_102837 Chr8 20121217 20121216 + MPING 430 0.0003 (1/2900) 0 * * Os_TE_102811 Chr8 20115185 20115186 - COPIA2-LTR_OS 6433 0.0003 (1/2979) 0 * * Os_TE_102725 Chr8 20094269 20094270 - TRUNCATOR2_LTR 2904 0.0329 (98/2980) 0 * Os_TE_102724 Os_TE_102724 Chr8 20094265 20094264 + TRUNCATOR2_LTR 2904 0.0326 (97/2973) 0 * Os_TE_102725 Os_TE_102715 Chr8 20092070 20092069 - ORSiTETNOOT00147 3619 0.0014 (2/1408) 0 * * Os_TE_102688 Chr8 20081670 20081671 + AMYLTP 383 0.0011 (3/2688) 0 * * Os_TE_102684 Chr8 20080395 20080394 + ORSgTEMT00101674 340 0.0044 (13/2987) 0 * Os_TE_102683 Os_TE_102683 Chr8 20080394 20080395 + NDNA1TNA_OS 334 0.0044 (13/2985) 0 * Os_TE_102684 Os_TE_102682 Chr8 20080102 20080103 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * * Os_TE_102678 Chr8 20079010 20079009 + SC-10_LTR 4920 0.0007 (2/2988) 0 * * Os_TE_102669 Chr8 20076881 20076882 + COPIA2-LTR_OS 6433 0.0003 (1/2983) 0 * Os_TE_102668 Os_TE_102668 Chr8 20076877 20076876 - COPIA2-LTR_OS 6433 0.0007 (2/2984) 0 * Os_TE_102669 Os_TE_102666 Chr8 20074227 20074228 + ORSgTETNOOT00908 242 0.0050 (15/2988) 0 * * Os_TE_102663 Chr8 20072864 20072863 + OSTE15 1168 0.0057 (16/2829) 0 * * Os_TE_102653 Chr8 20067768 20067769 - CACTA-M 1129 0.0473 (141/2983) 0 * Os_TE_102652 Os_TE_102652 Chr8 20067766 20067765 + CACTA-I 1124 0.0525 (157/2990) 0 * Os_TE_102653 Os_TE_102651 Chr8 20067590 20067591 - STOWAWAY1_OS 149 0.0078 (23/2957) 0 * * Os_TE_102647 Chr8 20066860 20066861 - TREP219 104 0.0067 (20/2971) 0 * * Os_TE_102630 Chr8 20059809 20059810 + ORSgTETNOOT01834 251 0.0078 (23/2957) 0 * * Os_TE_102622 Chr8 20058457 20058456 - TYPEM 227 0.0170 (51/2996) 0 * Os_TE_102621 Os_TE_102621 Chr8 20058456 20058457 - ORSgTEMT02400148 214 0.0174 (52/2997) 0 * Os_TE_102622 Os_TE_102620 Chr8 20058245 20058246 + OLO24 345 0.0007 (2/2996) 0 * Os_TE_102619 Os_TE_102619 Chr8 20058243 20058242 - OLO24 345 0.0007 (2/2978) 0 * Os_TE_102620 Os_TE_102618 Chr8 20057934 20057933 + ORSgTETNOOT00032 218 0.0013 (4/2971) 0 * * Os_TE_102617 Chr8 20057328 20057329 + SC-8_LTR 4951 0.0003 (1/2981) 0 * Os_TE_102616 Os_TE_102616 Chr8 20057324 20057323 - SC-8_LTR 4951 0.0003 (1/2979) 0 * Os_TE_102617 Os_TE_102605 Chr8 20050064 20050065 - STOWAWAY51_OS 246 0.0003 (1/2917) 0 * * Os_TE_102588 Chr8 20042085 20042086 - RETROFIT_LTR 4866 0.0003 (1/2933) 0 * Os_TE_102587 Os_TE_102587 Chr8 20042082 20042081 + ORSiTERTOOT00033 4884 0.0003 (1/2912) 0 * Os_TE_102588 Os_TE_102584 Chr8 20038734 20038523 + STOWAWAY9_OS 235 0.8881 (1770/1993) -1 Intact * Os_TE_102557 Chr8 20032347 20032348 + OSCOPIA2_LTR 5476 0.1153 (319/2766) 0 * Os_TE_102556 Os_TE_102556 Chr8 20032343 20032342 - OSCOPIA2_LTR 5476 0.1195 (331/2769) 0 * Os_TE_102557 Os_TE_102549 Chr8 20028284 20029928 - TNR3 1536 0.8069 (2402/2977) 1 Intact * Os_TE_102547 Chr8 20028066 20028067 - RIRE5-LTR_OS 6427 0.0878 (263/2994) 0 * Os_TE_102546 Os_TE_102546 Chr8 20028059 20028058 + RIRE5-LTR_OS 6427 0.0872 (261/2993) 0 * Os_TE_102547 Os_TE_102544 Chr8 20027349 20027350 + COPI2_LTR 4733 0.1092 (327/2994) 0 * Os_TE_102543 Os_TE_102543 Chr8 20027345 20027344 - COPI2_LTR 4733 0.1083 (324/2992) 0 * Os_TE_102544 Os_TE_102534 Chr8 20022157 20022158 - ORSiTERT00100079 4922 0.0010 (3/2998) 0 * Os_TE_102533 Os_TE_102533 Chr8 20022153 20022152 + ORSiTERT00100079 4922 0.0010 (3/2992) 0 * Os_TE_102534 Os_TE_102532 Chr8 20020890 20020889 - UNIQUE 158 0.2127 (571/2685) 0 * * Os_TE_102531 Chr8 20020865 20020866 + OSTONOR1_LTR 6440 0.0005 (1/2065) 0 * Os_TE_102530 Os_TE_102530 Chr8 20020861 20020860 - OSTONOR1_LTR 6440 0.0005 (1/2197) 0 * Os_TE_102531 Os_TE_102527 Chr8 20020352 20020353 + RETRO1_LTR 8314 0.0044 (13/2988) 0 * * Os_TE_102519 Chr8 20017840 20017839 + ORSgTEMT00500476 150 0.2046 (592/2893) 0 * * Os_TE_102514 Chr8 20014280 20014279 - COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * * Os_TE_102488 Chr8 20007189 20007190 + RIREX_LTR 8828 0.0031 (9/2929) 0 * Os_TE_102487 Os_TE_102487 Chr8 20007185 20007184 - RIREX_LTR 8828 0.0027 (8/2920) 0 * Os_TE_102488 Os_TE_102483 Chr8 20006811 20006958 + ORSgTEMT00501072 147 0.8195 (2402/2931) 1 Intact * Os_TE_102480 Chr8 20006638 20006773 + ORSgTEMT00500512 153 0.8082 (2415/2988) 1 Intact * Os_TE_102478 Chr8 20006228 20006229 + ORSgTERT00200924 3299 0.0004 (1/2436) 0 * * Os_TE_102395 Chr8 19956405 19956664 + ORSgTEMT04600039 283 0.8314 (2411/2900) 1 Intact * Os_TE_102393 Chr8 19954956 19954955 + ORSgTEMT01701478 178 0.2039 (611/2997) 0 * * Os_TE_102388 Chr8 19952622 19952623 + JOUZHENA 607 0.1776 (519/2923) 0 * Os_TE_102387 Os_TE_102387 Chr8 19952615 19952614 - JOUZHENA 607 0.1896 (559/2949) 0 * Os_TE_102388 Os_TE_102369 Chr8 19949557 19948900 + Mudr5_OS 5952 0.7786 (2033/2611) 1 Intact * Os_TE_102364 Chr8 19948373 19947790 - DS-RICE2N 613 0.8022 (2352/2932) 1 Intact Os_TE_102363 Os_TE_102363 Chr8 19947790 19948371 + DS-RICE2N 613 0.8062 (2380/2952) 1 Intact Os_TE_102364 Os_TE_102362 Chr8 19947229 19947228 + ORSgTETNOOT01534 208 0.2006 (594/2961) 0 * * Os_TE_102351 Chr8 19942680 19947072 - SZ-22_LTR 4403 0.2881 (826/2867) 1 Intact * Os_TE_102341 Chr8 19941817 19941816 + ORSgTEMT00500201 140 0.2057 (608/2956) 0 * Os_TE_102340 Os_TE_102340 Chr8 19941816 19941817 + ORSgTETNOOT00906 136 0.2045 (604/2954) 0 * Os_TE_102341 Os_TE_102336 Chr8 19941171 19941172 - DS-RICE4N 715 0.2009 (599/2982) 0 * * Os_TE_102326 Chr8 19936013 19936014 + SPMLIKE 10989 0.0010 (3/2988) 0 * Os_TE_102325 Os_TE_102325 Chr8 19936011 19936010 - ORSgTETN00200001 10994 0.0010 (3/2991) 0 * Os_TE_102326 Os_TE_102321 Chr8 19934853 19934854 - MuDR4_OS 7610 0.2085 (517/2480) 0 * Os_TE_102320 Os_TE_102320 Chr8 19934847 19934846 - MuDR4_OS 7610 0.1951 (573/2937) 0 * Os_TE_102321 Os_TE_102299 Chr8 19930314 19929979 + ORSgTEMT00101341 314 0.7560 (2231/2951) 1 Intact * Os_TE_102296 Chr8 19929990 19929991 + COPIA2-LTR_OS 6433 0.0004 (1/2246) 0 * * Os_TE_102295 Chr8 19929977 19930314 + ORSgTEMT00100428 339 0.7591 (2259/2976) 1 Intact * Os_TE_102294 Chr8 19929219 19929220 + RIREX_LTR 8828 0.0048 (14/2932) 0 * Os_TE_102293 Os_TE_102293 Chr8 19929215 19929214 - RIREX_LTR 8828 0.0034 (10/2952) 0 * Os_TE_102294 Os_TE_102292 Chr8 19928372 19928371 - RIREX_LTR 8828 0.0003 (1/2992) 0 * * Os_TE_102271 Chr8 19918898 19921083 + MERMITEB 1610 0.8906 (2484/2789) 1 Intact * Os_TE_102268 Chr8 19912648 19912647 + TWIFB1 3737 0.0004 (1/2698) 0 * * Os_TE_102265 Chr8 19910718 19910719 + CLOUD-2 711 0.1118 (335/2996) 0 * * Os_TE_102231 Chr8 19894701 19894338 + CASTAWAY 364 0.2726 (811/2975) 1 Intact Os_TE_102230 Os_TE_102230 Chr8 19894338 19894701 - ORSgTEMT00600085 364 0.2721 (812/2984) 1 Intact Os_TE_102231 Os_TE_102229 Chr8 19892630 19892631 - ORSgTETNOOT00908 242 0.0047 (14/2988) 0 * Os_TE_102228 Os_TE_102228 Chr8 19892628 19892627 + ORSgTETNOOT00908 242 0.0047 (14/2986) 0 * Os_TE_102229 Os_TE_102227 Chr8 19890203 19890204 - MPING 430 0.0003 (1/2932) 0 * Os_TE_102226 Os_TE_102226 Chr8 19890201 19890200 + MPING 430 0.0003 (1/2938) 0 * Os_TE_102227 Os_TE_102221 Chr8 19886955 19886954 - ORSgTEMT01400011 212 0.0285 (40/1402) 0 * * Os_TE_102215 Chr8 19885261 19885083 - F118 179 0.8688 (2086/2401) 1 Intact * Os_TE_102211 Chr8 19883877 19883876 - ORSgTEMT01701348 105 0.1078 (322/2986) 0 * Os_TE_102210 Os_TE_102210 Chr8 19883854 19883855 - ORSgTEMT01700029 143 0.1085 (324/2985) 0 * Os_TE_102211 Os_TE_102199 Chr8 19878440 19878439 - DNAUN1_OS 408 0.0047 (14/2957) 0 * * Os_TE_102196 Chr8 19877469 19877468 - COPI2_LTR 4733 0.0003 (1/2893) 0 * * Os_TE_102195 Chr8 19874853 19874439 + ORSgTEMT00300122 416 0.8011 (2388/2981) 1 Intact Os_TE_102192 Os_TE_102192 Chr8 19874431 19874844 + ORSgTEMT00300069 394 0.8046 (2400/2983) 1 Intact Os_TE_102195 Os_TE_102191 Chr8 19873931 19873932 - INDITTO 263 0.0010 (3/2967) 0 * Os_TE_102190 Os_TE_102190 Chr8 19873929 19873928 + INDITTO 263 0.0010 (3/2996) 0 * Os_TE_102191 Os_TE_102184 Chr8 19873282 19861803 + ORSiTERTOOT00291 11421 0.8308 (2411/2902) 1 Intact * Os_TE_102166 Chr8 19859555 19859689 + ORSgTEMT01701101 133 0.8739 (2411/2759) 1 Intact * Os_TE_102165 Chr8 19859530 19859531 + ORSgTEMT00502070 137 0.2024 (601/2969) 0 * * Os_TE_102159 Chr8 19857630 19857631 + MERMITEB 1610 0.1525 (427/2800) 0 * Os_TE_102158 Os_TE_102158 Chr8 19857626 19857625 + MERMITEB 1610 0.2054 (611/2974) 0 * Os_TE_102159 Os_TE_102155 Chr8 19857387 19857238 + ORSgTEMT00501317 148 0.8110 (2408/2969) 1 Intact Os_TE_102153 Os_TE_102153 Chr8 19857235 19857376 + ORSgTEMT00501712 146 0.7973 (2301/2886) 1 Intact Os_TE_102155 Os_TE_102148 Chr8 19856911 19857184 - ORSgTEMT00900542 277 0.2717 (801/2948) 1 Intact * Os_TE_102145 Chr8 19856576 19856784 - ORSgTEMT01400015 213 0.7969 (2323/2915) 1 Intact * Os_TE_102137 Chr8 19855287 19855286 - STOWAWAY15_OS 145 0.2092 (625/2987) 0 * Os_TE_102136 Os_TE_102136 Chr8 19855286 19855287 + TREP220 109 0.2057 (614/2985) 0 * Os_TE_102137 Os_TE_102127 Chr8 19852689 19852688 - RETRO2_LTR 12874 0.0893 (255/2854) 0 * * Os_TE_102116 Chr8 19849933 19849934 - RIREX_LTR 8828 0.0242 (72/2970) 0 * Os_TE_102115 Os_TE_102115 Chr8 19849929 19849928 + RIREX_LTR 8828 0.0249 (74/2975) 0 * Os_TE_102116 Os_TE_102111 Chr8 19848611 19848460 + ORSgTEMT00501601 153 0.8003 (2333/2915) -1 Intact Os_TE_102110 Os_TE_102110 Chr8 19848460 19848608 + ORSgTEMT00500639 148 0.8285 (2343/2828) 1 Intact Os_TE_102111 Os_TE_102109 Chr8 19847923 19847924 - MPING 430 0.0004 (1/2798) 0 * Os_TE_102108 Os_TE_102108 Chr8 19847921 19847920 + MPING 430 0.0003 (1/2863) 0 * Os_TE_102109 Os_TE_102090 Chr8 19846623 19846842 - ORSgTEMT00900741 219 0.6376 (1911/2997) 1 Intact * Os_TE_102089 Chr8 19846524 19846525 - MuDR4_OS 7610 0.0007 (2/2991) 0 * Os_TE_102088 Os_TE_102088 Chr8 19846517 19846516 - MuDR4_OS 7610 0.0007 (2/2992) 0 * Os_TE_102089 Os_TE_102087 Chr8 19846209 19846210 - RIREX_LTR 8828 0.0010 (3/2918) 0 * Os_TE_102086 Os_TE_102086 Chr8 19846205 19846204 + RIREX_LTR 8828 0.0010 (3/2998) 0 * Os_TE_102087 Os_TE_102075 Chr8 19843177 19842844 + NDNA1TNA_OS 334 0.1762 (428/2429) 1 Intact Os_TE_102074 Os_TE_102074 Chr8 19842842 19843177 + ORSgTEMT00100531 325 0.1345 (400/2975) 1 Intact Os_TE_102075 Os_TE_102073 Chr8 19842764 19842529 + STOWAWAY21_OS 243 0.3398 (1014/2984) 0.83 Intact * Os_TE_102068 Chr8 19842326 19842325 - ORSgTEMT03000017 382 0.0007 (2/2994) 0 * * Os_TE_102066 Chr8 19842036 19841802 - ORSgTEMT00900075 250 0.3495 (1045/2990) 1 Intact Os_TE_102063 Os_TE_102063 Chr8 19841800 19842036 + ORSgTEMT00900319 250 0.3467 (1034/2982) 1 Intact Os_TE_102066 Os_TE_102062 Chr8 19841739 19841738 + OLO24 345 0.6618 (1961/2963) 0 * Os_TE_102061 Os_TE_102061 Chr8 19841727 19841728 - OLO24 345 0.6571 (1928/2934) 0 * Os_TE_102062 Os_TE_102060 Chr8 19841576 19841577 + NDNA1TNA_OS 334 0.0017 (5/2983) 0 * Os_TE_102059 Os_TE_102059 Chr8 19841574 19841573 - NDNA1TNA_OS 334 0.0017 (5/2978) 0 * Os_TE_102060 Os_TE_102057 Chr8 19841441 19841442 + ORSgTEMT00500476 150 0.6632 (1953/2945) 0 * * Os_TE_102056 Chr8 19841333 19841332 + MERMITE18C 1473 0.6586 (1929/2929) 0 * * Os_TE_102050 Chr8 19840898 19840899 - RIREX_LTR 8828 0.0003 (1/2994) 0 * Os_TE_102049 Os_TE_102049 Chr8 19840894 19840893 + RIREX_LTR 8828 0.0003 (1/2994) 0 * Os_TE_102050 Os_TE_102014 Chr8 19824920 19824921 - GLUTEL1LIKE 273 0.6534 (1893/2897) 0 * * Os_TE_102013 Chr8 19824657 19824656 - OSTE15 1168 0.6693 (1996/2982) 0 * * Os_TE_102012 Chr8 19824632 19824289 + OLO24 345 0.4665 (1064/2281) 1 Intact * Os_TE_102007 Chr8 19822662 19822189 + TEOS1 476 0.3483 (990/2842) 1 Intact Os_TE_102004 Os_TE_102004 Chr8 19822188 19822662 - TEOS1 476 0.3386 (986/2912) 1 Intact Os_TE_102007 Os_TE_102003 Chr8 19821219 19821220 + TRUNCATOR 2918 0.2292 (628/2740) 0 * * Os_TE_101998 Chr8 19819540 19819539 + SINE03_OS 360 0.1136 (306/2693) 0 * * Os_TE_101987 Chr8 19817456 19817455 + RETROSAT4_LTR 13504 0.0003 (1/2992) 0 * * Os_TE_101978 Chr8 19816368 19816369 + COPIA2-LTR_OS 6433 0.0020 (6/2983) 0 * Os_TE_101977 Os_TE_101977 Chr8 19816364 19816363 - COPIA2-LTR_OS 6433 0.0017 (5/2899) 0 * Os_TE_101978 Os_TE_101976 Chr8 19816065 19816064 - DNAUN1_OS 408 0.0838 (251/2994) 0 * * Os_TE_101974 Chr8 19815193 19815194 + NDNA1TNA_OS 334 0.0225 (64/2850) 0 * * Os_TE_101971 Chr8 19813530 19813531 + RETRO2A_LTR 12895 0.0030 (9/2963) 0 * * Os_TE_101941 Chr8 19806166 19805478 - CASLET 354 0.1983 (590/2975) 1 Intact Os_TE_101936 Os_TE_101936 Chr8 19805478 19806166 + CASLET 354 0.1974 (588/2979) 1 Intact Os_TE_101941 Os_TE_101934 Chr8 19804746 19804745 - COPIA2-LTR_OS 6433 0.0007 (2/2945) 0 * * Os_TE_101927 Chr8 19803531 19803530 + ORSgTEMT00502544 146 0.7174 (1957/2728) 0 * * Os_TE_101922 Chr8 19802637 19802877 - ORSgTEMT01400014 209 0.2504 (719/2871) 1 Intact * Os_TE_101921 Chr8 19802476 19802337 + ORSgTEMT00500201 140 0.2872 (837/2914) 1 Intact Os_TE_101919 Os_TE_101919 Chr8 19802331 19802473 - ORSgTEMT00501356 145 0.2916 (839/2877) 1 Intact Os_TE_101921 Os_TE_101912 Chr8 19801582 19801790 + ORSgTEMT01601122 212 0.3094 (798/2579) 1 Intact * Os_TE_101911 Chr8 19801093 19801314 - ORSgTEMT00101174 225 0.2691 (805/2991) 1 Intact * Os_TE_101898 Chr8 19794656 19794896 + ORSgTETNOOT00908 242 0.4896 (846/1728) 1 Intact * Os_TE_101894 Chr8 19793782 19793634 - ORSgTEMT00501204 149 0.2894 (831/2871) 1 Intact Os_TE_101892 Os_TE_101892 Chr8 19793634 19793782 + ORSgTEMT00500411 151 0.3281 (830/2530) 1 Intact Os_TE_101894 Os_TE_101838 Chr8 19779282 19779283 - ORSiTETNOOT00156 3648 0.0261 (26/998) 0 * * Os_TE_101828 Chr8 19775370 19775371 + F770 284 0.0032 (9/2828) 0 * * Os_TE_101807 Chr8 19766000 19765999 - TYPEU2 382 0.6648 (1983/2983) 0 * * Os_TE_101803 Chr8 19764999 19765000 + CACTA-H 1152 0.0023 (2/860) 0 * Os_TE_101802 Os_TE_101802 Chr8 19764997 19764996 - CACTA-H 1152 0.0023 (2/855) 0 * Os_TE_101803 Os_TE_101800 Chr8 19764520 19764521 - SETARIA1 1293 0.6641 (1890/2846) 0 * * Os_TE_101791 Chr8 19761196 19761197 + MuDR2_OS 6770 0.2730 (410/1502) 0 * Os_TE_101790 Os_TE_101790 Chr8 19761187 19761186 - MuDR2_OS 6770 0.1496 (443/2962) 0 * Os_TE_101791 Os_TE_101789 Chr8 19761032 19761033 - TYPEU 362 0.0020 (6/2989) 0 * Os_TE_101788 Os_TE_101788 Chr8 19761025 19761024 + ORSgTEMT03000025 382 0.0020 (6/2985) 0 * Os_TE_101789 Os_TE_101778 Chr8 19756935 19756934 + RETROSAT4_LTR 13504 0.0117 (35/2983) 0 * * Os_TE_101777 Chr8 19756123 19756122 - TRUNCATOR2_LTR 2904 0.4085 (585/1432) 0 * * Os_TE_101776 Chr8 19754955 19754956 + ORSiCMCM00100019 2717 0.1934 (531/2746) 0 * * Os_TE_101774 Chr8 19754169 19754168 + ORSgTEMT00900053 249 0.8192 (2442/2981) 0 * Os_TE_101773 Os_TE_101773 Chr8 19754165 19754166 - ORSgTEMT00900099 250 0.8207 (2453/2989) 0 * Os_TE_101774 Os_TE_101751 Chr8 19750984 19750983 - ORSgTEMT01701882 154 0.8040 (2281/2837) 0 * * Os_TE_101746 Chr8 19749031 19749030 + ORSgTEMT00100797 337 0.8169 (2360/2889) 0 * Os_TE_101745 Os_TE_101745 Chr8 19749025 19749026 - ORSgTEMT00100272 356 0.7998 (2189/2737) 0 * Os_TE_101746 Os_TE_101744 Chr8 19748881 19748882 - INDITTO 263 0.0094 (27/2860) 0 * * Os_TE_101740 Chr8 19746947 19746948 + COPIA1-LTR_OS 9292 0.6727 (1998/2970) 0 * Os_TE_101739 Os_TE_101739 Chr8 19746943 19746942 - SZ-5LTR 1223 0.6745 (2010/2980) 0 * Os_TE_101740 Os_TE_101738 Chr8 19746941 19746942 + SZ-5LTR 1223 0.0077 (8/1043) 0 * * Os_TE_101737 Chr8 19746872 19746871 - SZ-22_LTR 4403 0.0003 (1/2964) 0 * * Os_TE_101732 Chr8 19745260 19745484 - ORSgTETNOOT00844 225 0.3505 (1036/2956) 1 Intact * Os_TE_101730 Chr8 19744664 19744872 - ORSgTEMT01400029 213 0.3355 (991/2954) 1 Intact * Os_TE_101728 Chr8 19739363 19739364 + F770 284 0.0105 (31/2962) 0 * * Os_TE_101718 Chr8 19735768 19735769 - TELIA 141 0.0003 (1/2922) 0 * * Os_TE_101716 Chr8 19735676 19735677 - ORSgTETNOOT01607 258 0.6837 (2008/2937) 0 * * Os_TE_101688 Chr8 19727063 19727062 + RETROSAT2LTRA 3112 0.0064 (19/2963) 0 * * Os_TE_101682 Chr8 19722999 19722998 - STOWAWAY46_OS 154 0.1591 (470/2954) 0 * * Os_TE_101652 Chr8 19718041 19717888 - ORSgTEMT01701488 202 0.8463 (2527/2986) 1 Intact Os_TE_101651 Os_TE_101651 Chr8 19717888 19718041 + ORSgTEMT01701663 106 0.8460 (2522/2981) 1 Intact Os_TE_101652 Os_TE_101648 Chr8 19715507 19715506 - SEVERIN-2 1952 0.8326 (2163/2598) 0 * * Os_TE_101636 Chr8 19706888 19706887 + ORSgTEMT01701983 154 0.0025 (1/397) 0 * * Os_TE_101626 Chr8 19699028 19699029 + STOWAWAY51_OS 246 0.8559 (2518/2942) 0 * * Os_TE_101618 Chr8 19692888 19692887 + ORSgTEMT01701104 154 0.8708 (2542/2919) 0 * * Os_TE_101617 Chr8 19692809 19692465 + ORSgTEMT00101341 314 0.1936 (402/2076) 1 Intact Os_TE_101615 Os_TE_101615 Chr8 19692463 19692809 + ORSgTEMT00101674 340 0.1556 (395/2539) 1 Intact Os_TE_101617 Os_TE_101614 Chr8 19692439 19692440 + ORSgTETNOOT00032 218 0.1566 (460/2938) 0 * * Os_TE_101613 Chr8 19692029 19692028 + ORSgTETNOOT01834 251 0.0010 (2/2012) 0 * * Os_TE_101611 Chr8 19691374 19691019 + SINE03_OS 360 0.1366 (394/2884) 1 Intact * Os_TE_101610 Chr8 19690743 19690744 - MERMITE18C 1473 0.8708 (2433/2794) 0 * * Os_TE_101606 Chr8 19690392 19690391 - UNIQUE 158 0.4902 (326/665) 0 * * Os_TE_101596 Chr8 19685694 19685695 - RIREX_LTR 8828 0.0060 (18/2996) 0 * Os_TE_101595 Os_TE_101595 Chr8 19685690 19685689 + RIREX_LTR 8828 0.0057 (17/2992) 0 * Os_TE_101596 Os_TE_101592 Chr8 19682946 19682947 + TWIFBIG 3567 0.0058 (17/2938) 0 * Os_TE_101591 Os_TE_101591 Chr8 19682939 19682938 - ORSiTETNOOT00200 3563 0.0007 (2/2943) 0 * Os_TE_101592 Os_TE_101588 Chr8 19681034 19681035 + RIREX_LTR 8828 0.0670 (200/2986) 0 * Os_TE_101587 Os_TE_101587 Chr8 19681030 19681029 - RIREX_LTR 8828 0.0682 (204/2992) 0 * Os_TE_101588 Os_TE_101585 Chr8 19679939 19679940 + SZ-9LTR 965 0.0670 (200/2987) 0 * * Os_TE_101574 Chr8 19676903 19676904 - SZ-22_LTR 4403 0.0003 (1/2956) 0 * Os_TE_101573 Os_TE_101573 Chr8 19676899 19676898 + ORSiTERTOOT00226 792 0.0003 (1/2993) 0 * Os_TE_101574 Os_TE_101572 Chr8 19676875 19676874 - ORSgTEMT02400179 221 0.1252 (374/2987) 0 * * Os_TE_101556 Chr8 19668583 19668584 - ORSiTERTOOT00368 5673 0.0689 (204/2960) 0 * * Os_TE_101521 Chr8 19657762 19657763 - INDITTO 263 0.4518 (1102/2439) 0 * Os_TE_101520 Os_TE_101520 Chr8 19657760 19657759 + INDITTO 263 0.3977 (1106/2781) 0 * Os_TE_101521 Os_TE_101517 Chr8 19656060 19656061 - INDITTO 263 0.0684 (204/2983) 0 * Os_TE_101516 Os_TE_101516 Chr8 19656058 19656057 - INDITTO 263 0.0709 (212/2991) 0 * Os_TE_101517 Os_TE_101505 Chr8 19650077 19650078 + RIREX_LTR 8828 0.0737 (220/2984) 0 * * Os_TE_101492 Chr8 19635550 19635551 - RETROSAT2LTR 12796 0.0003 (1/2984) 0 * * Os_TE_101491 Chr8 19634727 19634728 - COPIA2-LTR_OS 6433 0.0003 (1/2970) 0 * Os_TE_101490 Os_TE_101490 Chr8 19634723 19634722 + COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_101491 Os_TE_101488 Chr8 19633068 19633067 + COPIA2-LTR_OS 6433 0.0003 (1/2906) 0 * * Os_TE_101481 Chr8 19631511 19631512 - MuDR3_OS 8604 0.0051 (15/2953) 0 * Os_TE_101480 Os_TE_101480 Chr8 19631502 19631501 - MuDR3_OS 8604 0.0051 (15/2950) 0 * Os_TE_101481 Os_TE_101472 Chr8 19628315 19628316 - RIRE2_LTR 11306 0.1035 (310/2996) 0 * Os_TE_101471 Os_TE_101471 Chr8 19628311 19628310 - ORSgTERT00201216 11284 0.1013 (303/2991) 0 * Os_TE_101472 Os_TE_101469 Chr8 19625978 19625979 - SZ-9LTR 965 0.0010 (3/2990) 0 * Os_TE_101468 Os_TE_101468 Chr8 19625974 19625973 + SZ-9LTR 965 0.0010 (3/2988) 0 * Os_TE_101469 Os_TE_101440 Chr8 19619100 19619101 + SC-1_LTR 6888 0.0010 (3/2972) 0 * * Os_TE_101430 Chr8 19610553 19610552 - COPIA2-LTR_OS 6433 0.0010 (3/2976) 0 * * Os_TE_101390 Chr8 19597995 19597996 - SETARIA1 1293 0.0003 (1/2981) 0 * * Os_TE_101382 Chr8 19597434 19597435 + SPMLIKE 10989 0.0459 (136/2964) 0 * Os_TE_101381 Os_TE_101381 Chr8 19597432 19597431 - ORSgTETN00200001 10994 0.0466 (138/2962) 0 * Os_TE_101382 Os_TE_101375 Chr8 19593912 19593911 + ORSgTEMT01601525 239 0.0017 (5/2984) 0 * Os_TE_101374 Os_TE_101374 Chr8 19593909 19593910 - ORSgTEMT01602413 239 0.0033 (10/2990) 0 * Os_TE_101375 Os_TE_101354 Chr8 19588573 19588572 - STOWAWAY44_OS 240 0.0020 (6/2967) 0 * Os_TE_101353 Os_TE_101353 Chr8 19588570 19588571 + STOWAWAY44_OS 240 0.0027 (8/2981) 0 * Os_TE_101354 Os_TE_101352 Chr8 19588390 19588389 + ORSgTEMT00101674 340 0.0034 (10/2978) 0 * Os_TE_101351 Os_TE_101351 Chr8 19588389 19588390 + NDNA1TNA_OS 334 0.0030 (9/2957) 0 * Os_TE_101352 Os_TE_101339 Chr8 19587499 19587500 - OSTE14 885 0.0030 (9/2990) 0 * Os_TE_101338 Os_TE_101338 Chr8 19587497 19587496 - OSTE14 885 0.0030 (9/2988) 0 * Os_TE_101339 Os_TE_101332 Chr8 19584776 19584777 + SEVERIN-2 1952 0.0027 (8/2954) 0 * * Os_TE_101321 Chr8 19581049 19581048 + COPI2_LTR 4733 0.0020 (6/2970) 0 * * Os_TE_101305 Chr8 19573814 19573813 + INDITTO 263 0.2816 (843/2994) 0 * * Os_TE_101302 Chr8 19571712 19571713 + ORSiTERTOOT00332 5395 0.0003 (1/2969) 0 * * Os_TE_101291 Chr8 19564339 19564340 + SPMLIKE 10989 0.0017 (5/2903) 0 * * Os_TE_101287 Chr8 19563821 19563822 - RIRE5-LTR_OS 6427 0.0414 (123/2971) 0 * Os_TE_101286 Os_TE_101286 Chr8 19563815 19563814 + RIRE5-LTR_OS 6427 0.0405 (120/2966) 0 * Os_TE_101287 Os_TE_101285 Chr8 19563652 19563651 + TRUNCATOR 2918 0.0003 (1/2947) 0 * Os_TE_101284 Os_TE_101284 Chr8 19563651 19563652 - TRUNCATOR 2918 0.0003 (1/2950) 0 * Os_TE_101285 Os_TE_101283 Chr8 19563616 19563617 - ORSgTETN00200001 10994 0.0034 (10/2984) 0 * Os_TE_101282 Os_TE_101282 Chr8 19563614 19563613 + CACTA-M 1129 0.0037 (11/2978) 0 * Os_TE_101283 Os_TE_101270 Chr8 19559344 19559345 + OSTE33 1012 0.0023 (7/2998) 0 * Os_TE_101269 Os_TE_101269 Chr8 19559335 19559334 + OSTE33 1012 0.0020 (6/2977) 0 * Os_TE_101270 Os_TE_101267 Chr8 19558528 19558529 + SPMLIKE 10989 0.0010 (3/2989) 0 * Os_TE_101266 Os_TE_101266 Chr8 19558526 19558525 - ORSgTETN00200001 10994 0.0013 (4/2993) 0 * Os_TE_101267 Os_TE_101256 Chr8 19554850 19554851 - RETROSAT2LTRA 3112 0.0038 (11/2904) 0 * * Os_TE_101210 Chr8 19543356 19542105 + SZLTR 1249 0.2285 (673/2945) 1 Intact * Os_TE_101169 Chr8 19533462 19533461 + RIREX_LTR 8828 0.3101 (907/2925) 0 * * Os_TE_101147 Chr8 19528940 19528941 + COPI2_LTR 4733 0.0137 (41/2991) 0 * Os_TE_101146 Os_TE_101146 Chr8 19528936 19528935 - COPI2_LTR 4733 0.0145 (43/2958) 0 * Os_TE_101147 Os_TE_101121 Chr8 19516443 19516442 + RIREX_LTR 8828 0.2839 (848/2987) 0 * * Os_TE_101119 Chr8 19515760 19515761 + MUJITOS1 3987 0.0014 (4/2955) 0 * * Os_TE_101066 Chr8 19493393 19493394 - GYPSY-A_LTR 8951 0.0102 (30/2948) 0 * * Os_TE_101062 Chr8 19487766 19487767 - TEMPINDAS 4259 0.0013 (4/2995) 0 * * Os_TE_101054 Chr8 19485906 19485907 - COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_101053 Os_TE_101053 Chr8 19485902 19485901 + COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * Os_TE_101054 Os_TE_101045 Chr8 19484330 19484331 + NDNA1TNA_OS 334 0.0003 (1/2994) 0 * Os_TE_101044 Os_TE_101044 Chr8 19484328 19484327 - NDNA1TNA_OS 334 0.0003 (1/2993) 0 * Os_TE_101045 Os_TE_101026 Chr8 19479063 19479064 + ORSiTERTOOT00226 792 0.0017 (5/2979) 0 * * Os_TE_101017 Chr8 19476237 19476236 + ORSgTEMT01701591 154 0.0003 (1/2866) 0 * * Os_TE_101004 Chr8 19471498 19471497 - OSTONOR1_LTR 6440 0.0217 (65/2992) 0 * * Os_TE_100983 Chr8 19462221 19462222 + RIRE3_LTR 12054 0.0010 (3/2948) 0 * * Os_TE_100973 Chr8 19457179 19457178 + ORSgTEMT01601525 239 0.0003 (1/2871) 0 * * Os_TE_100944 Chr8 19454707 19454706 - ORSgTEMT00900760 239 0.0007 (2/2918) 0 * * Os_TE_100926 Chr8 19452361 19452362 + INDITTO 263 0.0752 (224/2978) 0 * Os_TE_100925 Os_TE_100925 Chr8 19452359 19452358 - INDITTO 263 0.0732 (217/2963) 0 * Os_TE_100926 Os_TE_100920 Chr8 19450595 19450596 - RETROSAT5_LTR 13878 0.2204 (339/1538) 0 * * Os_TE_100876 Chr8 19437419 19437420 + CPSC3_LTR 5175 0.0003 (1/2996) 0 * * Os_TE_100873 Chr8 19436728 19436727 - RIREX_LTR 8828 0.0164 (49/2990) 0 * * Os_TE_100861 Chr8 19430811 19430812 - SC-7_LTR 4431 0.0003 (1/2993) 0 * Os_TE_100860 Os_TE_100860 Chr8 19430807 19430806 + SC-7_LTR 4431 0.0003 (1/2992) 0 * Os_TE_100861 Os_TE_100852 Chr8 19424237 19424238 - F569 228 0.0007 (2/2994) 0 * Os_TE_100851 Os_TE_100851 Chr8 19424235 19424234 + F569 228 0.0007 (2/2993) 0 * Os_TE_100852 Os_TE_100845 Chr8 19422967 19422968 + STOWAWAY21_OS 243 0.0010 (3/2944) 0 * * Os_TE_100814 Chr8 19415842 19415843 - TRUNCATOR 2918 0.0012 (3/2591) 0 * * Os_TE_100813 Chr8 19415386 19415387 + RIRE2_LTR 11306 0.0010 (3/2981) 0 * Os_TE_100812 Os_TE_100812 Chr8 19415382 19415381 - RIRE2_LTR 11306 0.0010 (3/2973) 0 * Os_TE_100813 Os_TE_100783 Chr8 19395938 19395939 + ORSiTERTOOT00226 792 0.0004 (1/2495) 0 * * Os_TE_100771 Chr8 19387987 19387988 + RIREX_LTR 8828 0.0003 (1/2985) 0 * Os_TE_100770 Os_TE_100770 Chr8 19387983 19387982 - RIREX_LTR 8828 0.0003 (1/2987) 0 * Os_TE_100771 Os_TE_100766 Chr8 19385625 19385626 - ORSgTEMT02400179 221 0.0010 (3/2989) 0 * Os_TE_100765 Os_TE_100765 Chr8 19385624 19385623 - TYPEM 227 0.0010 (3/2984) 0 * Os_TE_100766 Os_TE_100763 Chr8 19382206 19382207 - ORSgTETN00200001 10994 0.0003 (1/2917) 0 * * Os_TE_100729 Chr8 19366732 19366731 - TRUNCATOR 2918 0.0027 (8/2985) 0 * * Os_TE_100724 Chr8 19363681 19363682 + RIREX_LTR 8828 0.0027 (8/2995) 0 * * Os_TE_100717 Chr8 19361475 19361474 - STOWAWAY51_OS 246 0.0007 (2/2976) 0 * Os_TE_100716 Os_TE_100716 Chr8 19361469 19361470 + STOWAWAY51_OS 246 0.0007 (2/2960) 0 * Os_TE_100717 Os_TE_100703 Chr8 19358284 19358283 - F569 228 0.0007 (2/2996) 0 * * Os_TE_100702 Chr8 19358109 19358108 + ORSgTEMT01400012 212 0.0285 (85/2978) 0 * Os_TE_100701 Os_TE_100701 Chr8 19358106 19358107 + ORSgTEMT01400031 216 0.0294 (88/2992) 0 * Os_TE_100702 Os_TE_100694 Chr8 19352984 19352983 + ENSPM5_OS 9581 0.0004 (1/2810) 0 * * Os_TE_100686 Chr8 19350188 19350189 + STOWAWAY9_OS 235 0.0012 (1/857) 0 * Os_TE_100685 Os_TE_100685 Chr8 19350179 19350178 + STOWAWAY17_OS 259 0.0286 (85/2970) 0 * Os_TE_100686 Os_TE_100684 Chr8 19350172 19350173 + ORSgTETNOOT01145 249 0.0115 (34/2948) 0 * * Os_TE_100681 Chr8 19350142 19350141 - COPIA2-LTR_OS 6433 0.0003 (1/2941) 0 * * Os_TE_100677 Chr8 19349548 19349547 + DEBOAT 110 0.0292 (87/2980) 0 * * Os_TE_100647 Chr8 19342759 19342758 + ORSgTEMT01600353 233 0.0004 (1/2407) 0 * * Os_TE_100644 Chr8 19341156 19341157 + COPIA2-LTR_OS 6433 0.0003 (1/2943) 0 * Os_TE_100643 Os_TE_100643 Chr8 19341152 19341151 - COPIA2-LTR_OS 6433 0.0003 (1/2946) 0 * Os_TE_100644 Os_TE_100637 Chr8 19337072 19337073 - ORSgTERT00201216 11284 0.0140 (39/2783) 0 * Os_TE_100636 Os_TE_100636 Chr8 19337060 19337059 - RIRE2_LTR 11306 0.0122 (34/2796) 0 * Os_TE_100637 Os_TE_100631 Chr8 19336292 19336293 - RIREX_LTR 8828 0.0003 (1/2991) 0 * Os_TE_100630 Os_TE_100630 Chr8 19336288 19336287 + RIREX_LTR 8828 0.0003 (1/2985) 0 * Os_TE_100631 Os_TE_100629 Chr8 19336061 19336062 + XIKE 594 0.0288 (86/2987) 0 * * Os_TE_100609 Chr8 19328766 19328767 - SZ-22_LTR 4403 0.0003 (1/2993) 0 * * Os_TE_100540 Chr8 19282865 19282866 - NDNA1TNA_OS 334 0.0054 (16/2989) 0 * Os_TE_100539 Os_TE_100539 Chr8 19282863 19282862 + NDNA1TNA_OS 334 0.0057 (17/2993) 0 * Os_TE_100540 Os_TE_100536 Chr8 19282246 19282247 + DS-RICE4N 715 0.0579 (172/2973) 0 * Os_TE_100535 Os_TE_100535 Chr8 19282239 19282238 - DS-RICE2N 613 0.0595 (177/2977) 0 * Os_TE_100536 Os_TE_100520 Chr8 19274621 19274383 + ORSgTEMT01602181 239 0.2236 (632/2827) 1 Intact Os_TE_100519 Os_TE_100519 Chr8 19274383 19274621 - ORSgTEMT01601493 303 0.1960 (542/2765) 1 Intact Os_TE_100520 Os_TE_100507 Chr8 19270913 19271155 + ORSgTETNOOT00908 242 0.2831 (844/2981) 1 Intact * Os_TE_100496 Chr8 19266794 19266795 + SC-10_LTR 4920 0.0013 (4/2973) 0 * Os_TE_100495 Os_TE_100495 Chr8 19266790 19266789 - SC-10_LTR 4920 0.0013 (4/2974) 0 * Os_TE_100496 Os_TE_100446 Chr8 19260886 19260885 - TRUNCATOR 2918 0.2680 (786/2933) 0 * Os_TE_100445 Os_TE_100445 Chr8 19260885 19260886 + TRUNCATOR 2918 0.2796 (830/2968) 0 * Os_TE_100446 Os_TE_100444 Chr8 19260684 19260685 - TRUNCATOR 2918 0.0003 (1/2969) 0 * * Os_TE_100417 Chr8 19238994 19238995 - RETRO2_LTR 12874 0.0007 (2/2992) 0 * Os_TE_100416 Os_TE_100416 Chr8 19238990 19238989 + RETRO2A_LTR 12895 0.0010 (3/2992) 0 * Os_TE_100417 Os_TE_100401 Chr8 19237654 19237653 + CACTA-H 1152 0.4162 (1209/2905) 0 * Os_TE_100400 Os_TE_100400 Chr8 19237653 19237654 + ORSgTETN00200005 1121 0.4363 (1297/2973) 0 * Os_TE_100401 Os_TE_100398 Chr8 19236988 19236987 - ORSiTETNOOT00156 3648 0.0003 (1/2961) 0 * * Os_TE_100376 Chr8 19227914 19227913 + SPMLIKE 10989 0.5914 (1728/2922) 0 * * Os_TE_100364 Chr8 19221579 19221580 + RETRO2_LTR 12874 0.0003 (1/2984) 0 * Os_TE_100363 Os_TE_100363 Chr8 19221575 19221574 - RETRO2_LTR 12874 0.0003 (1/2989) 0 * Os_TE_100364 Os_TE_100347 Chr8 19218370 19218371 + ORSgTETNOOT01028 232 0.0073 (15/2066) 0 * Os_TE_100346 Os_TE_100346 Chr8 19218358 19218357 + ORSgTETNOOT00072 203 0.0050 (15/2991) 0 * Os_TE_100347 Os_TE_100313 Chr8 19207958 19207959 - TESS 244 0.0047 (14/2988) 0 * * Os_TE_100293 Chr8 19196950 19196949 - TRUNCATOR 2918 0.0003 (1/2952) 0 * * Os_TE_100277 Chr8 19187110 19187109 + KRISPIE 956 0.0059 (13/2186) 0 * * Os_TE_100271 Chr8 19183265 19183266 - RETROSAT2LTR 12796 0.0057 (17/2995) 0 * * Os_TE_100270 Chr8 19182447 19182448 + DS-RICE4N 715 0.0044 (13/2975) 0 * Os_TE_100269 Os_TE_100269 Chr8 19182440 19182439 - DS-RICE2N 613 0.0044 (13/2979) 0 * Os_TE_100270 Os_TE_100268 Chr8 19181252 19181253 + RIREX_LTR 8828 0.0017 (5/2968) 0 * * Os_TE_100265 Chr8 19180942 19180941 - COPIA2-LTR_OS 6433 0.0013 (4/2989) 0 * * Os_TE_100231 Chr8 19176829 19176830 + COPIA2-LTR_OS 6433 0.0023 (7/2991) 0 * Os_TE_100230 Os_TE_100230 Chr8 19176825 19176824 - COPIA2-LTR_OS 6433 0.0027 (8/2992) 0 * Os_TE_100231 Os_TE_100226 Chr8 19172837 19172434 + ORSgTEMT00300122 416 0.3810 (953/2501) 1 Intact * Os_TE_100219 Chr8 19171340 19171339 + INDITTO 263 0.7065 (2092/2961) 0 * Os_TE_100218 Os_TE_100218 Chr8 19171335 19171336 - INDITTO 263 0.6984 (2049/2934) 0 * Os_TE_100219 Os_TE_100217 Chr8 19170978 19169655 - CACTA-E 1207 0.4149 (955/2302) 1 Intact Os_TE_100213 Os_TE_100213 Chr8 19169655 19170978 - EnSpm-N2_OS 1282 0.3051 (908/2976) 1 Intact Os_TE_100217 Os_TE_100207 Chr8 19167222 19167221 + ORSgTEMT01701591 154 0.0007 (2/2810) 0 * Os_TE_100206 Os_TE_100206 Chr8 19167221 19167222 - STOWAWAY1_OS 149 0.0007 (2/2906) 0 * Os_TE_100207 Os_TE_100203 Chr8 19166350 19166351 - STOWAWAY18_OS 216 0.0060 (18/2992) 0 * * Os_TE_100202 Chr8 19165993 19165994 - ORSgTEMT00502257 142 0.0067 (20/2982) 0 * Os_TE_100201 Os_TE_100201 Chr8 19165988 19165987 - ORSgTEMT00500675 140 0.0068 (20/2958) 0 * Os_TE_100202 Os_TE_100200 Chr8 19165605 19165606 + NDNA1TNA_OS 334 0.0003 (1/2993) 0 * Os_TE_100199 Os_TE_100199 Chr8 19165603 19165602 - NDNA1TNA_OS 334 0.0003 (1/2991) 0 * Os_TE_100200 Os_TE_100196 Chr8 19164049 19164050 + ORSiTERTOOT00329 5144 0.0010 (3/2955) 0 * Os_TE_100195 Os_TE_100195 Chr8 19164042 19164041 - ORSiTERTOOT00329 5144 0.0010 (3/2954) 0 * Os_TE_100196 Os_TE_100166 Chr8 19143461 19143460 - COPIA2-LTR_OS 6433 0.0003 (1/2976) 0 * * Os_TE_100160 Chr8 19138616 19138617 + RIREX_LTR 8828 0.0023 (7/2981) 0 * Os_TE_100159 Os_TE_100159 Chr8 19138612 19138611 - RIREX_LTR 8828 0.0024 (7/2974) 0 * Os_TE_100160 Os_TE_100050 Chr8 19094687 19094688 + ORSgTEMT01400031 216 0.0008 (2/2625) 0 * * Os_TE_100038 Chr8 19093649 19093650 + ORSgTEMT00901798 232 0.0054 (16/2978) 0 * * Os_TE_100030 Chr8 19089403 19089404 + ORSiTERTOOT00296 5553 0.0003 (1/2989) 0 * * Os_TE_100013 Chr8 19080855 19080193 + TWIFB1 3737 0.2913 (858/2945) 1 Intact * Os_TE_99997 Chr8 19072794 19072795 + COPIA2-LTR_OS 6433 0.0007 (2/2995) 0 * Os_TE_99996 Os_TE_99996 Chr8 19072790 19072789 - COPIA2-LTR_OS 6433 0.0007 (2/2995) 0 * Os_TE_99997 Os_TE_99989 Chr8 19067369 19067370 + ORSgTEMT02400014 229 0.3233 (968/2994) 0 * * Os_TE_99942 Chr8 19047652 19047653 + ORSgTEMT00600124 361 0.0513 (141/2748) 0 * * Os_TE_99906 Chr8 19023736 19023735 + SC-8_LTR 4951 0.0003 (1/2991) 0 * * Os_TE_99898 Chr8 19018902 19018901 - CACTA-M 1129 0.0003 (1/2954) 0 * * Os_TE_99896 Chr8 19016999 19017000 - ORSgTERT00201205 876 0.7016 (2090/2979) 0 * * Os_TE_99887 Chr8 19013338 19013073 - STOWAWAY45_OS 266 0.3840 (1147/2987) 1 Intact Os_TE_99886 Os_TE_99886 Chr8 19013073 19013338 + STOWAWAY45_OS 266 0.3842 (1146/2983) 1 Intact Os_TE_99887 Os_TE_99884 Chr8 19011867 19011868 - ORSgTEMT01600639 228 0.5811 (1656/2850) 0 * * Os_TE_99882 Chr8 19011811 19011812 - AMYLTP 383 0.1188 (144/1212) 0 * * Os_TE_99872 Chr8 19010659 19010660 + COPIA2-LTR_OS 6433 0.0003 (1/2944) 0 * * Os_TE_99853 Chr8 19007899 19007898 - DITAILA 257 0.6057 (1748/2886) 0 * * Os_TE_99849 Chr8 19005668 19005669 + COPI2_LTR 4733 0.0003 (1/2993) 0 * Os_TE_99848 Os_TE_99848 Chr8 19005664 19005663 - COPI2_LTR 4733 0.0003 (1/2993) 0 * Os_TE_99849 Os_TE_99846 Chr8 19004698 19004697 + RIREX_LTR 8828 0.0003 (1/2989) 0 * * Os_TE_99844 Chr8 19003557 19003556 - ORSgTEMT01601208 238 0.5766 (1682/2917) 0 * * Os_TE_99840 Chr8 19001714 19001713 + ORSgTEMT01602609 233 0.0021 (6/2887) 0 * Os_TE_99839 Os_TE_99839 Chr8 19001711 19001712 - ORSgTEMT01601493 303 0.0017 (5/2860) 0 * Os_TE_99840 Os_TE_99837 Chr8 18999855 18999854 + ORSgTEMT05200196 285 0.0020 (6/2993) 0 * * Os_TE_99835 Chr8 18999822 18999821 + INDITTO 263 0.0027 (8/2988) 0 * * Os_TE_99826 Chr8 18992391 18992392 + ORSgTEMT00500852 140 0.6143 (1623/2642) 0 * * Os_TE_99825 Chr8 18992350 18992093 - ORSgTEMT01602170 250 0.7434 (1547/2081) 1 Intact * Os_TE_99824 Chr8 18992332 18992093 - ORSgTEMT01602413 239 0.5349 (1057/1976) 1 Intact Os_TE_99822 Os_TE_99822 Chr8 18992093 18992325 - ORSgTEMT01600079 232 0.3446 (1017/2951) 1 Intact Os_TE_99824 Os_TE_99811 Chr8 18990253 18990254 - CACTA-N 987 0.6741 (1996/2961) 0 * * Os_TE_99810 Chr8 18989701 18989702 + COPIA2-LTR_OS 6433 0.0011 (1/951) 0 * * Os_TE_99803 Chr8 18988045 18988046 + ORSiTERTOOT00441 4741 0.0003 (1/2981) 0 * Os_TE_99802 Os_TE_99802 Chr8 18988041 18988040 - ORSiTERTOOT00441 4741 0.0003 (1/2980) 0 * Os_TE_99803 Os_TE_99795 Chr8 18985613 18985614 - COPI2_LTR 4733 0.0850 (249/2931) 0 * * Os_TE_99791 Chr8 18985031 18985032 - TREP215 239 0.6497 (1881/2895) 0 * * Os_TE_99790 Chr8 18984701 18984700 + ORSgTEMT01701591 154 0.0020 (6/2953) 0 * Os_TE_99789 Os_TE_99789 Chr8 18984699 18984700 - ORSgTEMT01701956 152 0.0020 (6/2967) 0 * Os_TE_99790 Os_TE_99788 Chr8 18984291 18984029 - ORSgTETNOOT02539 260 0.3537 (1044/2952) 1 Intact Os_TE_99785 Os_TE_99785 Chr8 18984029 18984291 + INDITTO 263 0.3581 (1042/2910) 1 Intact Os_TE_99788 Os_TE_99782 Chr8 18983251 18983252 - ORSgTEMT00900293 223 0.0010 (1/1019) 0 * * Os_TE_99781 Chr8 18982954 18982955 - INDITTO 263 0.6181 (1369/2215) 0 * Os_TE_99780 Os_TE_99780 Chr8 18982950 18982949 - ORSgTETNOOT00790 253 0.6828 (1830/2680) 0 * Os_TE_99781 Os_TE_99778 Chr8 18982927 18982695 + STOWAWAY21_OS 243 0.4031 (898/2228) 1 Intact Os_TE_99775 Os_TE_99775 Chr8 18982695 18982927 + STOWAWAY21_OS 243 0.3416 (1011/2960) 1 Intact Os_TE_99778 Os_TE_99754 Chr8 18967410 18967409 + COPIA2-LTR_OS 6433 0.0007 (2/2894) 0 * * Os_TE_99753 Chr8 18967227 18967226 + ORSgTEMT01602139 240 0.6688 (1949/2914) 0 * Os_TE_99752 Os_TE_99752 Chr8 18967224 18967225 - ORSgTEMT01600768 234 0.6786 (1921/2831) 0 * Os_TE_99753 Os_TE_99750 Chr8 18966719 18966720 + COPIA2-LTR_OS 6433 0.0003 (1/2884) 0 * * Os_TE_99739 Chr8 18955504 18955503 + ORSiTEMT06800002 376 0.0131 (39/2988) 0 * Os_TE_99738 Os_TE_99738 Chr8 18955503 18955504 + CACTA-H 1152 0.0124 (37/2992) 0 * Os_TE_99739 Os_TE_99733 Chr8 18954387 18954388 + ENSPM4_OS 11610 0.0003 (1/2963) 0 * * Os_TE_99725 Chr8 18952026 18952025 - ORSgTEMT01602413 239 0.0732 (209/2856) 0 * * Os_TE_99722 Chr8 18949888 18949889 - ORSgTETN00200001 10994 0.0233 (69/2966) 0 * * Os_TE_99720 Chr8 18949529 18949528 + ORSgTEMT01602181 239 0.0130 (39/2994) 0 * * Os_TE_99718 Chr8 18949141 18949142 - MDM2 312 0.0325 (97/2987) 0 * * Os_TE_99710 Chr8 18945190 18945191 - TRUNCATOR2_LTR 2904 0.0009 (2/2293) 0 * Os_TE_99709 Os_TE_99709 Chr8 18945186 18945185 + ORSiCMCM00100019 2717 0.0009 (2/2289) 0 * Os_TE_99710 Os_TE_99706 Chr8 18944972 18944971 + ORSgTEMT01602413 239 0.0289 (66/2280) 0 * * Os_TE_99681 Chr8 18934264 18934265 - RIREX_LTR 8828 0.4857 (1067/2197) 0 * * Os_TE_99656 Chr8 18921923 18927519 - ORSiTERTOOT00393 5597 0.4334 (833/1922) 1 Intact * Os_TE_99633 Chr8 18916018 18916017 - ORSgTEMT01601432 239 0.0249 (54/2170) 0 * Os_TE_99632 Os_TE_99632 Chr8 18916015 18916016 + ORSgTEMT01602181 239 0.0248 (54/2177) 0 * Os_TE_99633 Os_TE_99630 Chr8 18913399 18913400 + RETROSAT2LTR 12796 0.4192 (822/1961) 0 * * Os_TE_99621 Chr8 18910643 18900241 - SZ-55_LTR 10318 0.4323 (952/2202) 1 Intact Os_TE_99616 Os_TE_99616 Chr8 18900241 18910643 + SZ-55_LTR 10318 0.4356 (960/2204) 1 Intact Os_TE_99621 Os_TE_99597 Chr8 18895231 18895230 + RIREX_LTR 8828 0.0005 (1/1888) 0 * * Os_TE_99585 Chr8 18892242 18892241 - INDITTO 263 0.0014 (3/2143) 0 * * Os_TE_99584 Chr8 18891506 18891507 - RIREX_LTR 8828 0.0009 (2/2200) 0 * Os_TE_99583 Os_TE_99583 Chr8 18891502 18891501 + RIREX_LTR 8828 0.0009 (2/2202) 0 * Os_TE_99584 Os_TE_99545 Chr8 18874502 18874501 - ORSgTEMT00500026 147 0.0032 (7/2190) 0 * Os_TE_99544 Os_TE_99544 Chr8 18874500 18874501 - ORSgTEMT00500575 143 0.0032 (7/2220) 0 * Os_TE_99545 Os_TE_99540 Chr8 18870194 18870193 - MERMITED 1572 0.2494 (723/2899) 0 * * Os_TE_99535 Chr8 18868184 18856336 + CACTA-B 1103 0.7584 (2131/2810) 1 Intact Os_TE_99517 Os_TE_99517 Chr8 18856336 18868181 - ORSgTETN00200001 10994 0.7326 (1893/2584) 1 Intact Os_TE_99535 Os_TE_99513 Chr8 18854695 18854694 - CLOUD-4 520 0.0035 (9/2538) 0 * * Os_TE_99506 Chr8 18852216 18852217 - COPIA2-LTR_OS 6433 0.0015 (4/2620) 0 * Os_TE_99505 Os_TE_99505 Chr8 18852212 18852211 + COPIA2-LTR_OS 6433 0.0011 (3/2762) 0 * Os_TE_99506 Os_TE_99496 Chr8 18849052 18849051 - TRUNCATOR 2918 0.0024 (7/2959) 0 * Os_TE_99495 Os_TE_99495 Chr8 18849051 18849052 + TRUNCATOR 2918 0.0024 (7/2963) 0 * Os_TE_99496 Os_TE_99491 Chr8 18846297 18846298 - ORSgTEMT01601208 238 0.0235 (70/2984) 0 * * Os_TE_99483 Chr8 18844692 18844456 - ORSgTEMT01600902 239 0.7328 (2128/2904) 1 Intact Os_TE_99482 Os_TE_99482 Chr8 18844456 18844692 + ORSgTEMT01601934 207 0.7356 (2189/2976) 1 Intact Os_TE_99483 Os_TE_99480 Chr8 18843594 18843595 + ORSgTEMT01600662 238 0.0021 (5/2438) 0 * * Os_TE_99474 Chr8 18841862 18841861 + COPIA1-LTR_OS 9292 0.0338 (79/2340) 0 * * Os_TE_99473 Chr8 18841572 18841573 + SZ-67LTR 1540 0.0004 (1/2233) 0 * Os_TE_99472 Os_TE_99472 Chr8 18841568 18841567 - SZ-67LTR 1540 0.0031 (7/2284) 0 * Os_TE_99473 Os_TE_99471 Chr8 18841556 18841555 + ORSgTEMT00501786 149 0.0209 (47/2249) 0 * * Os_TE_99458 Chr8 18840055 18840056 + COPIA1-LTR_OS 9292 0.0186 (43/2311) 0 * Os_TE_99457 Os_TE_99457 Chr8 18840051 18840050 - COPIA1-LTR_OS 9292 0.0164 (38/2311) 0 * Os_TE_99458 Os_TE_99452 Chr8 18839903 18839904 + ORSiTERTOOT00363 4650 0.0546 (127/2326) 0 * Os_TE_99451 Os_TE_99451 Chr8 18839899 18839898 - ORSiTERTOOT00363 4650 0.0552 (128/2320) 0 * Os_TE_99452 Os_TE_99450 Chr8 18839591 18839592 - TRUNCATOR2_LTR 2904 0.0004 (1/2325) 0 * Os_TE_99449 Os_TE_99449 Chr8 18839587 18839586 + ORSiTERTOOT00028 8600 0.0004 (1/2319) 0 * Os_TE_99450 Os_TE_99444 Chr8 18838536 18838537 - GYPSY1-LTR_OS 8900 0.0564 (132/2339) 0 * Os_TE_99443 Os_TE_99443 Chr8 18838532 18838531 + GYPSY1-LTR_OS 8900 0.0540 (126/2334) 0 * Os_TE_99444 Os_TE_99442 Chr8 18838475 18838476 - COPIA2-LTR_OS 6433 0.0004 (1/2339) 0 * Os_TE_99441 Os_TE_99441 Chr8 18838471 18838470 + COPIA2-LTR_OS 6433 0.0004 (1/2333) 0 * Os_TE_99442 Os_TE_99438 Chr8 18837212 18837213 + ORSgTEMT01601591 242 0.0059 (11/1862) 0 * * Os_TE_99436 Chr8 18836777 18836776 - ORSiTEMT01300001 950 0.0031 (7/2272) 0 * * Os_TE_99435 Chr8 18836035 18836034 + SZ-58LTR 114 0.0004 (1/2331) 0 * * Os_TE_99434 Chr8 18835419 18835418 + ORSgTEMT01601591 242 0.0021 (5/2337) 0 * * Os_TE_99430 Chr8 18833225 18833226 - COPIO_LTR 11693 0.1534 (405/2640) 0 * Os_TE_99429 Os_TE_99429 Chr8 18833221 18833220 + COPIO_LTR 11693 0.2387 (697/2920) 0 * Os_TE_99430 Os_TE_99428 Chr8 18832332 18832333 - ORSgTEMT00501447 126 0.2019 (579/2868) 0 * * Os_TE_99426 Chr8 18832266 18832267 + SPMLIKE 10989 0.0327 (94/2875) 0 * * Os_TE_99424 Chr8 18831942 18830910 - CACTA-H 1152 0.8135 (2325/2858) 1 Intact Os_TE_99423 Os_TE_99423 Chr8 18830910 18831939 + CACTA-M 1129 0.8079 (2309/2858) 1 Intact Os_TE_99424 Os_TE_99417 Chr8 18828336 18828337 - OSTONOR1_LTR 6440 0.0257 (73/2839) 0 * Os_TE_99416 Os_TE_99416 Chr8 18828332 18828331 + OSTONOR1_LTR 6440 0.0262 (75/2858) 0 * Os_TE_99417 Os_TE_99408 Chr8 18826910 18826909 + ORSiTERTOOT00027 10853 0.0025 (7/2810) 0 * * Os_TE_99387 Chr8 18816255 18816254 + RIREX_LTR 8828 0.0259 (74/2854) 0 * * Os_TE_99384 Chr8 18815840 18815841 - ORSgTEMT00100854 331 0.1665 (473/2840) 0 * Os_TE_99383 Os_TE_99383 Chr8 18815838 18815837 + ORSgTEMT00100854 331 0.1630 (463/2840) 0 * Os_TE_99384 Os_TE_99342 Chr8 18795201 18793278 - ORSgTETNOOT02462 1789 0.8174 (2355/2881) 1 Intact * Os_TE_99336 Chr8 18793075 18793076 - RIRE3_LTR 12054 0.0463 (138/2979) 0 * Os_TE_99335 Os_TE_99335 Chr8 18793071 18793070 + RIRE3_LTR 12054 0.0421 (125/2967) 0 * Os_TE_99336 Os_TE_99334 Chr8 18792737 18792738 + DASIA-2 1198 0.0003 (1/2990) 0 * * Os_TE_99332 Chr8 18790926 18790925 + COPIA1-LTR_OS 9292 0.0017 (5/2972) 0 * * Os_TE_99330 Chr8 18790835 18787888 + SEVERIN-2 1952 0.3116 (928/2978) 1 Intact Os_TE_99329 Os_TE_99329 Chr8 18787886 18790835 - SEVERIN-2 1952 0.3140 (940/2994) 1 Intact Os_TE_99330 Os_TE_99320 Chr8 18783906 18784362 + SC9A_LTR 5300 0.8052 (2398/2978) 1 Solo_LTR * Os_TE_99319 Chr8 18783671 18782481 - COPIA1-LTR_OS 9292 0.8156 (2415/2961) 1 Solo_LTR Os_TE_99318 Os_TE_99318 Chr8 18782484 18783670 + COPIA1-LTR_OS 9292 0.8106 (2405/2967) 1 Solo_LTR Os_TE_99319 Os_TE_99315 Chr8 18780608 18780609 - RIREX_LTR 8828 0.0023 (7/2980) 0 * Os_TE_99314 Os_TE_99314 Chr8 18780604 18780603 + RIREX_LTR 8828 0.0024 (7/2962) 0 * Os_TE_99315 Os_TE_99309 Chr8 18778397 18778396 - COPI2_LTR 4733 0.0004 (1/2420) 0 * * Os_TE_99294 Chr8 18771127 18771128 + RIREX_LTR 8828 0.0008 (2/2379) 0 * Os_TE_99293 Os_TE_99293 Chr8 18771123 18771122 - RIREX_LTR 8828 0.0008 (2/2390) 0 * Os_TE_99294 Os_TE_99291 Chr8 18770189 18770188 - MPING 430 0.0012 (3/2416) 0 * * Os_TE_99285 Chr8 18765468 18765467 + OSTE33 1012 0.0014 (4/2909) 0 * * Os_TE_99272 Chr8 18759941 18759940 - AMYLTP 383 0.0246 (73/2973) 0 * * Os_TE_99271 Chr8 18759721 18759722 + ORSgTEMT00500852 140 0.2003 (599/2990) 0 * * Os_TE_99258 Chr8 18754743 18754742 + TRUNCATOR 2918 0.0315 (76/2414) 0 * Os_TE_99257 Os_TE_99257 Chr8 18754742 18754743 - TRUNCATOR 2918 0.0291 (70/2404) 0 * Os_TE_99258 Os_TE_99247 Chr8 18746153 18746154 - ORSgTETN00200001 10994 0.1602 (266/1660) 0 * Os_TE_99246 Os_TE_99246 Chr8 18746151 18746150 + SPMLIKE 10989 0.3444 (851/2471) 0 * Os_TE_99247 Os_TE_99245 Chr8 18746084 18735149 + ENSPM2_OS 10580 0.7447 (1657/2225) 1 Intact Os_TE_99228 Os_TE_99228 Chr8 18735149 18746082 - ENSPM2_OS 10580 0.8473 (2419/2855) 1 Intact Os_TE_99245 Os_TE_99227 Chr8 18735119 18735118 + CACTA-H 1152 0.1720 (497/2890) 0 * * Os_TE_99219 Chr8 18732431 18732432 - CACTA-N 987 0.2010 (601/2990) 0 * * Os_TE_99218 Chr8 18731667 18731404 - STOWAWAY45_OS 266 0.8059 (2400/2978) 1 Intact * Os_TE_99212 Chr8 18729557 18729558 - CLOUD 734 0.0025 (6/2424) 0 * Os_TE_99211 Os_TE_99211 Chr8 18729549 18729548 - CLOUD 734 0.0017 (5/2943) 0 * Os_TE_99212 Os_TE_99210 Chr8 18729250 18729251 - MuDR4_OS 7610 0.0025 (6/2423) 0 * Os_TE_99209 Os_TE_99209 Chr8 18729244 18729243 - MuDR4_OS 7610 0.0021 (5/2413) 0 * Os_TE_99210 Os_TE_99208 Chr8 18729225 18729226 + RIREX_LTR 8828 0.0010 (3/2949) 0 * Os_TE_99207 Os_TE_99207 Chr8 18729221 18729220 - RIRE2_LTR 11306 0.0014 (4/2885) 0 * Os_TE_99208 Os_TE_99206 Chr8 18729178 18729177 - ORSgTEMT01700211 150 0.1996 (596/2986) 0 * * Os_TE_99203 Chr8 18727254 18727255 - RIREX_LTR 8828 0.0003 (1/2893) 0 * * Os_TE_99201 Chr8 18726978 18726977 + TESS 244 0.0003 (1/2986) 0 * * Os_TE_99199 Chr8 18726560 18726561 - TRUNCATOR2_LTR 2904 0.4498 (1083/2408) 0 * * Os_TE_99197 Chr8 18726474 18726475 - ORSgTEMT01601432 239 0.0893 (239/2675) 0 * * Os_TE_99194 Chr8 18723991 18723071 + ORSiTETNOOT00107 906 0.8129 (2399/2951) 1 Intact Os_TE_99189 Os_TE_99189 Chr8 18723068 18723989 - ORSiTETNOOT00107 906 0.8268 (1380/1669) 1 Intact Os_TE_99194 Os_TE_99187 Chr8 18722380 18720178 - OSHOOTER 11544 0.3540 (1024/2893) 1 Intact * Os_TE_99185 Chr8 18719014 18717893 + COPIA1-LTR_OS 9292 0.8073 (2404/2978) 1 Solo_LTR Os_TE_99181 Os_TE_99181 Chr8 18717894 18719014 - COPIA1-LTR_OS 9292 0.8087 (2414/2985) 1 Solo_LTR Os_TE_99185 Os_TE_99173 Chr8 18715303 18715304 - ORSgTETN00200001 10994 0.4551 (1054/2316) 0 * Os_TE_99172 Os_TE_99172 Chr8 18715301 18715300 + SPMLIKE 10989 0.4634 (1083/2337) 0 * Os_TE_99173 Os_TE_99169 Chr8 18715070 18715071 - STOWAWAY1_OS 149 0.1764 (487/2760) 0 * * Os_TE_99167 Chr8 18714755 18714756 - ORSgTEMT01600639 228 0.1913 (558/2917) 0 * * Os_TE_99166 Chr8 18714708 18706376 - RIREX_LTR 8828 0.7899 (2282/2889) 1 Intact Os_TE_99153 Os_TE_99153 Chr8 18706376 18714706 + RIREX_LTR 8828 0.7765 (2220/2859) 1 Intact Os_TE_99166 Os_TE_99152 Chr8 18706258 18706257 - TYPEH 309 0.1919 (539/2809) 0 * * Os_TE_99151 Chr8 18705726 18705725 + RIRE5-LTR_OS 6427 0.0004 (1/2326) 0 * * Os_TE_99105 Chr8 18692594 18692595 - RIRE2_LTR 11306 0.0066 (15/2288) 0 * * Os_TE_99096 Chr8 18690500 18690501 + MERMITE18E 1528 0.0785 (188/2396) 0 * * Os_TE_99093 Chr8 18690021 18690022 - ORSgTETN00200001 10994 0.0027 (8/2985) 0 * Os_TE_99092 Os_TE_99092 Chr8 18690019 18690018 + SPMLIKE 10989 0.0024 (7/2963) 0 * Os_TE_99093 Os_TE_99081 Chr8 18688169 18688017 - ORSgTEMT01701882 154 0.8484 (2350/2770) 1 Intact Os_TE_99077 Os_TE_99077 Chr8 18688017 18688169 + STOWAWAY50_OS 174 0.7929 (2232/2815) 1 Intact Os_TE_99081 Os_TE_99074 Chr8 18687439 18687438 - RETRO2_LTR 12874 0.0037 (10/2675) 0 * * Os_TE_99067 Chr8 18685413 18685414 + RETRO2A_LTR 12895 0.0019 (4/2127) 0 * Os_TE_99066 Os_TE_99066 Chr8 18685409 18685408 - RETRO1_LTR 8314 0.0030 (9/2975) 0 * Os_TE_99067 Os_TE_99064 Chr8 18685310 18685030 + ORSgTEMT05200194 270 0.7549 (2233/2958) 1 Intact * Os_TE_99062 Chr8 18685299 18685298 - INDITTO 263 0.0022 (5/2241) 0 * * Os_TE_99059 Chr8 18685027 18685310 + YOUREN 286 0.7591 (2234/2943) 1 Intact * Os_TE_99056 Chr8 18684986 18684987 + INDITTO 263 0.0018 (5/2845) 0 * Os_TE_99055 Os_TE_99055 Chr8 18684984 18684983 - INDITTO 263 0.0017 (5/2868) 0 * Os_TE_99056 Os_TE_99053 Chr8 18684647 18684646 - RIREX_LTR 8828 0.0012 (3/2452) 0 * * Os_TE_99050 Chr8 18683559 18683560 + DS-RICE4N 715 0.0007 (2/2965) 0 * * Os_TE_99026 Chr8 18671744 18671743 - ORSiTEMT01000008 242 0.0764 (227/2973) 0 * * Os_TE_98987 Chr8 18651532 18651533 + RIREX_LTR 8828 0.0673 (201/2985) 0 * Os_TE_98986 Os_TE_98986 Chr8 18651528 18651527 - RIREX_LTR 8828 0.0686 (205/2988) 0 * Os_TE_98987 Os_TE_98956 Chr8 18637884 18637883 - STOWAWAY11_OS 292 0.0004 (1/2824) 0 * * Os_TE_98952 Chr8 18637144 18637143 + MuDR2_OS 6770 0.0011 (3/2798) 0 * * Os_TE_98951 Chr8 18636978 18636979 + RIREX_LTR 8828 0.0397 (88/2219) 0 * * Os_TE_98929 Chr8 18627751 18627752 + RIREX_LTR 8828 0.0010 (3/2981) 0 * Os_TE_98928 Os_TE_98928 Chr8 18627747 18627746 - RIREX_LTR 8828 0.0010 (3/2995) 0 * Os_TE_98929 Os_TE_98914 Chr8 18623308 18623307 + ORSgTEMT00600272 361 0.0017 (5/2988) 0 * * Os_TE_98913 Chr8 18623061 18623062 - CLOUD 734 0.0003 (1/2971) 0 * * Os_TE_98910 Chr8 18618169 18618170 - INDITTO 263 0.0037 (11/2986) 0 * * Os_TE_98894 Chr8 18614185 18614186 - ORSgTEMT00500578 129 0.0003 (1/2995) 0 * Os_TE_98893 Os_TE_98893 Chr8 18614184 18614183 + GAIJIN 147 0.0003 (1/2991) 0 * Os_TE_98894 Os_TE_98871 Chr8 18608282 18608281 - SZ-50_LTR 11691 0.0003 (1/2946) 0 * * Os_TE_98863 Chr8 18606671 18606672 - COPIA2-LTR_OS 6433 0.0010 (3/2980) 0 * Os_TE_98862 Os_TE_98862 Chr8 18606667 18606666 + COPIA2-LTR_OS 6433 0.0010 (3/2973) 0 * Os_TE_98863 Os_TE_98853 Chr8 18604150 18602748 + SETARIA 1402 0.1634 (488/2986) 1 Intact Os_TE_98852 Os_TE_98852 Chr8 18602748 18604150 - SETARIA 1402 0.1652 (495/2997) 1 Intact Os_TE_98853 Os_TE_98839 Chr8 18588024 18588023 - ORSgTEMT01400022 212 0.0003 (1/2988) 0 * * Os_TE_98831 Chr8 18586668 18586669 + ORSiTERT00100079 4922 0.0294 (88/2990) 0 * Os_TE_98830 Os_TE_98830 Chr8 18586664 18586663 - ORSiTERT00100079 4922 0.0302 (90/2984) 0 * Os_TE_98831 Os_TE_98828 Chr8 18586574 18586573 - COPI2_LTR 4733 0.0003 (1/2973) 0 * * Os_TE_98825 Chr8 18586429 18586428 + SPMLIKE 10989 0.0003 (1/2974) 0 * * Os_TE_98824 Chr8 18585627 18585628 + STOWAWAY9_OS 235 0.0003 (1/2882) 0 * * Os_TE_98819 Chr8 18585491 18585492 + ORSiTETN00200006 8216 0.0726 (213/2934) 0 * Os_TE_98818 Os_TE_98818 Chr8 18585489 18585488 - ORSiTETN00200006 8216 0.0647 (188/2904) 0 * Os_TE_98819 Os_TE_98813 Chr8 18584694 18584695 + SPMLIKE 10989 0.1599 (478/2990) 0 * * Os_TE_98811 Chr8 18584619 18584620 - COPI2_LTR 4733 0.0003 (1/2978) 0 * Os_TE_98810 Os_TE_98810 Chr8 18584615 18584614 + COPI2_LTR 4733 0.0003 (1/2973) 0 * Os_TE_98811 Os_TE_98806 Chr8 18583643 18583642 + SEVERIN-2 1952 0.0003 (1/2985) 0 * * Os_TE_98796 Chr8 18579684 18579683 - OSLINE1_2 6317 0.0003 (1/2964) 0 * * Os_TE_98785 Chr8 18572944 18572945 - ORSgTETN00200001 10994 0.1515 (448/2957) 0 * Os_TE_98784 Os_TE_98784 Chr8 18572942 18572941 + SPMLIKE 10989 0.1534 (455/2967) 0 * Os_TE_98785 Os_TE_98746 Chr8 18551822 18551821 + TRUNCATOR 2918 0.0010 (3/2974) 0 * * Os_TE_98740 Chr8 18549780 18549781 - STOWAWAY17_OS 259 0.0060 (18/2979) 0 * Os_TE_98739 Os_TE_98739 Chr8 18549779 18549778 + ORSgTETNOOT00792 273 0.0064 (19/2984) 0 * Os_TE_98740 Os_TE_98738 Chr8 18549666 18549667 - ORSgTETN00200001 10994 0.2290 (667/2913) 0 * Os_TE_98737 Os_TE_98737 Chr8 18549664 18549663 + SPMLIKE 10989 0.2449 (726/2964) 0 * Os_TE_98738 Os_TE_98724 Chr8 18544605 18544606 - RIRE2_LTR 11306 0.1704 (505/2964) 0 * * Os_TE_98718 Chr8 18543214 18543215 - COPI2_LTR 4733 0.0023 (5/2192) 0 * * Os_TE_98698 Chr8 18537590 18537589 - MuDR4_OS 7610 0.0007 (2/2961) 0 * * Os_TE_98684 Chr8 18534327 18534328 + SZ-40LTR 2465 0.0003 (1/2985) 0 * * Os_TE_98671 Chr8 18531515 18531516 - STOWAWAY1_OS 149 0.0017 (5/2910) 0 * * Os_TE_98619 Chr8 18498472 18498471 + TRUNCATOR 2918 0.0083 (25/2996) 0 * Os_TE_98618 Os_TE_98618 Chr8 18498471 18498472 - TRUNCATOR 2918 0.0083 (25/2997) 0 * Os_TE_98619 Os_TE_98580 Chr8 18483010 18483009 - STOWAWAY1_OS 149 0.0003 (1/2990) 0 * Os_TE_98579 Os_TE_98579 Chr8 18483009 18483010 + ORSgTEMT01701743 163 0.0003 (1/2992) 0 * Os_TE_98580 Os_TE_98559 Chr8 18467991 18467990 - COPIA2-LTR_OS 6433 0.0071 (18/2518) 0 * * Os_TE_98555 Chr8 18459376 18459377 - RPO_OS 1983 0.0016 (4/2498) 0 * * Os_TE_98548 Chr8 18456569 18456570 + ORSgTEMT00500361 192 0.0017 (5/2995) 0 * * Os_TE_98545 Chr8 18454794 18454557 - ORSgTEMT01601208 238 0.8258 (2422/2933) 1 Intact Os_TE_98544 Os_TE_98544 Chr8 18454557 18454794 - ORSgTEMT01601208 238 0.8207 (2398/2922) 1 Intact Os_TE_98545 Os_TE_98534 Chr8 18451840 18451990 - ORSgTEMT00500512 153 0.8362 (2465/2948) 1 Intact * Os_TE_98532 Chr8 18451551 18451550 - YOUREN 286 0.1862 (538/2890) 0 * * Os_TE_98528 Chr8 18448764 18448763 - ENSPM3_OS 10837 0.0020 (6/2991) 0 * * Os_TE_98525 Chr8 18447816 18447817 - TYPEM 227 0.0003 (1/2910) 0 * * Os_TE_98523 Chr8 18447600 18447599 + ORSgTEMT01601122 212 0.1651 (480/2907) 0 * * Os_TE_98504 Chr8 18443427 18443426 + ORSgTEMT00901780 248 0.1886 (547/2901) 0 * Os_TE_98503 Os_TE_98503 Chr8 18443416 18443417 - ORSgTEMT00901288 246 0.1875 (545/2907) 0 * Os_TE_98504 Os_TE_98502 Chr8 18443361 18443123 + ORSgTEMT01602250 243 0.8282 (2396/2893) 1 Intact Os_TE_98500 Os_TE_98500 Chr8 18443123 18443361 - ORSgTEMT01602603 239 0.8707 (2410/2768) 1 Intact Os_TE_98502 Os_TE_98499 Chr8 18443053 18443054 + RIREX_LTR 8828 0.0913 (253/2772) 0 * Os_TE_98498 Os_TE_98498 Chr8 18443049 18443048 - RIREX_LTR 8828 0.1022 (244/2387) 0 * Os_TE_98499 Os_TE_98482 Chr8 18428906 18428905 + GYPSY-A_LTR 8951 0.0004 (1/2469) 0 * * Os_TE_98470 Chr8 18420320 18420177 + ORSgTEMT00501601 153 0.8711 (2488/2856) 1 Intact * Os_TE_98466 Chr8 18419890 18419891 + CLOUD-4 520 0.1051 (207/1969) 0 * * Os_TE_98465 Chr8 18419870 18414666 + ORSiTERTOOT00392 5205 0.5201 (1359/2613) 1 Intact * Os_TE_98459 Chr8 18414666 18419870 - ORSiTERTOOT00392 5205 0.4561 (1355/2971) 1 Intact * Os_TE_98449 Chr8 18413584 18413585 + COPI2_LTR 4733 0.0003 (1/2864) 0 * Os_TE_98448 Os_TE_98448 Chr8 18413580 18413579 - COPI2_LTR 4733 0.0007 (2/2865) 0 * Os_TE_98449 Os_TE_98447 Chr8 18413376 18413116 - ORSgTETNOOT01607 258 0.8239 (2437/2958) 1 Intact Os_TE_98444 Os_TE_98444 Chr8 18413114 18413376 + ORSgTETNOOT01128 258 0.8177 (2382/2913) 1 Intact Os_TE_98447 Os_TE_98442 Chr8 18412096 18411861 - Cassandra_OS-LTR 764 0.8265 (2472/2991) 1 Solo_LTR Os_TE_98441 Os_TE_98441 Chr8 18411861 18412097 + Cassandra_OS-LTR 764 0.8476 (2491/2939) 1 Solo_LTR Os_TE_98442 Os_TE_98437 Chr8 18411762 18411763 - RETRO1_LTR 8314 0.0575 (169/2939) 0 * * Os_TE_98435 Chr8 18411302 18411303 + COPIA2-LTR_OS 6433 0.0004 (1/2480) 0 * Os_TE_98434 Os_TE_98434 Chr8 18411298 18411297 - COPIA2-LTR_OS 6433 0.0004 (1/2478) 0 * Os_TE_98435 Os_TE_98419 Chr8 18403665 18403666 + RETROSAT2LTR 12796 0.0304 (82/2701) 0 * * Os_TE_98418 Chr8 18402336 18401774 + ORSiTERTOOT00291 11421 0.6350 (1613/2540) 1 Intact * Os_TE_98403 Chr8 18397416 18397417 - NDNA1TNA_OS 334 0.0011 (3/2659) 0 * Os_TE_98402 Os_TE_98402 Chr8 18397414 18397413 + NDNA1TNA_OS 334 0.0011 (3/2754) 0 * Os_TE_98403 Os_TE_98401 Chr8 18397402 18397403 + ENSPM4_OS 11610 0.0329 (90/2732) 0 * * Os_TE_98400 Chr8 18397322 18397323 - HATOS1 3488 0.2640 (725/2746) 0 * * Os_TE_98387 Chr8 18393921 18393922 - ORSgTERT00201216 11284 0.0033 (10/2994) 0 * * Os_TE_98379 Chr8 18391995 18391994 + ORSgTETNOOT00908 242 0.0682 (190/2787) 0 * * Os_TE_98376 Chr8 18391881 18380593 - ORSgTERT00201216 11284 0.4708 (1338/2842) 1 Intact * Os_TE_98357 Chr8 18380061 18380062 - HATOS1 3488 0.2621 (749/2858) 0 * * Os_TE_98343 Chr8 18373629 18373630 + SETARIA2 1142 0.0010 (3/2982) 0 * Os_TE_98342 Os_TE_98342 Chr8 18373625 18373624 + SETARIA2 1142 0.0010 (3/2980) 0 * Os_TE_98343 Os_TE_98331 Chr8 18370807 18370808 - NDNA2TNA_OS 346 0.0004 (1/2795) 0 * * Os_TE_98330 Chr8 18370342 18370343 - RIREX_LTR 8828 0.0161 (48/2981) 0 * * Os_TE_98299 Chr8 18358945 18358946 + SZ-30_LTR 6377 0.0014 (4/2872) 0 * * Os_TE_98287 Chr8 18352231 18352232 + TRUNCATOR 2918 0.0070 (20/2873) 0 * * Os_TE_98272 Chr8 18345638 18345639 + INDITTO 263 0.0014 (4/2806) 0 * Os_TE_98271 Os_TE_98271 Chr8 18345636 18345635 - INDITTO 263 0.0014 (4/2824) 0 * Os_TE_98272 Os_TE_98245 Chr8 18337258 18337259 - RIRE2_LTR 11306 0.0242 (69/2846) 0 * * Os_TE_98218 Chr8 18330949 18330950 - GLUTEL1LIKE 273 0.0018 (5/2831) 0 * * Os_TE_98201 Chr8 18329229 18329228 + COPIA2-LTR_OS 6433 0.0083 (24/2881) 0 * * Os_TE_98191 Chr8 18326687 18326686 + ORSgTETNOOT00032 218 0.0160 (46/2870) 0 * * Os_TE_98189 Chr8 18326237 18326238 - NDNA1TNA_OS 334 0.0731 (210/2871) 0 * Os_TE_98188 Os_TE_98188 Chr8 18326235 18326234 + NDNA1TNA_OS 334 0.0740 (213/2878) 0 * Os_TE_98189 Os_TE_98186 Chr8 18325203 18324573 + DS-RICE4N 715 0.4906 (1301/2652) 1 Intact * Os_TE_98143 Chr8 18311449 18311448 + EnSpm-N2_OS 1282 0.0003 (1/2957) 0 * * Os_TE_98138 Chr8 18305223 18305222 + ORSiTETNOOT00107 906 0.0033 (10/2996) 0 * Os_TE_98137 Os_TE_98137 Chr8 18305219 18305220 - ORSiTETNOOT00107 906 0.0040 (12/2996) 0 * Os_TE_98138 Os_TE_98124 Chr8 18301321 18301320 + CLOUD-4 520 0.0004 (1/2769) 0 * * Os_TE_98082 Chr8 18290458 18290457 - ORSgTEMT06000344 191 0.0079 (9/1141) -1 * * Os_TE_98044 Chr8 18277060 18277059 - CACTA-H 1152 0.0056 (14/2496) 0 * Os_TE_98043 Os_TE_98043 Chr8 18277059 18277060 + CACTA-B 1103 0.0082 (21/2554) 0 * Os_TE_98044 Os_TE_98042 Chr8 18276938 18276939 - CLOUD 734 0.0237 (67/2823) 0 * Os_TE_98041 Os_TE_98041 Chr8 18276930 18276929 - CLOUD 734 0.0188 (52/2771) 0 * Os_TE_98042 Os_TE_98040 Chr8 18276604 18276603 - COPIA2-LTR_OS 6433 0.0007 (2/2873) 0 * * Os_TE_98039 Chr8 18276052 18276053 - INDITTO 263 0.0010 (3/2917) 0 * Os_TE_98038 Os_TE_98038 Chr8 18276050 18276049 - ORSgTETNOOT00053 263 0.0010 (3/2968) 0 * Os_TE_98039 Os_TE_98015 Chr8 18263637 18263638 - STOWAWAY51_OS 246 0.0006 (1/1577) -1 * * Os_TE_98013 Chr8 18263465 18263464 + AMYLTP 383 0.0242 (58/2400) 0 * * Os_TE_98006 Chr8 18260345 18260346 + SUSU 279 0.0003 (1/2970) 0 * * Os_TE_97982 Chr8 18258449 18258450 + RETRO2A_LTR 12895 0.0255 (75/2945) 0 * Os_TE_97981 Os_TE_97981 Chr8 18258445 18258444 - RETRO1_LTR 8314 0.0261 (77/2954) 0 * Os_TE_97982 Os_TE_97970 Chr8 18256926 18256927 + SC-8_LTR 4951 0.0003 (1/2985) 0 * Os_TE_97969 Os_TE_97969 Chr8 18256922 18256921 - SC-8_LTR 4951 0.0003 (1/2990) 0 * Os_TE_97970 Os_TE_97968 Chr8 18256303 18255796 - CLOUD-6 508 0.2358 (702/2977) 1 Intact Os_TE_97966 Os_TE_97966 Chr8 18255796 18256303 + CLOUD-6 508 0.2360 (702/2974) 1 Intact Os_TE_97968 Os_TE_97960 Chr8 18251906 18251905 - NDNA1TNA_OS 334 0.2250 (624/2773) 0 * * Os_TE_97950 Chr8 18246002 18246003 - ORSgTEMT01700029 143 0.0003 (1/2992) 0 * * Os_TE_97945 Chr8 18242213 18242214 - MuDR3_OS 8604 0.0993 (295/2970) 0 * Os_TE_97944 Os_TE_97944 Chr8 18242206 18242205 + MuDR3_OS 8604 0.0998 (297/2977) 0 * Os_TE_97945 Os_TE_97924 Chr8 18225804 18225805 + MDR2 6967 0.0010 (3/2911) 0 * Os_TE_97923 Os_TE_97923 Chr8 18225796 18225795 + MDR2 6967 0.0010 (3/2973) 0 * Os_TE_97924 Os_TE_97915 Chr8 18221346 18221345 - COPIA2-LTR_OS 6433 0.0003 (1/2984) 0 * Os_TE_97914 Os_TE_97914 Chr8 18221345 18221346 + COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * Os_TE_97915 Os_TE_97880 Chr8 18211295 18211296 - RIREX_LTR 8828 0.0961 (285/2966) 0.2 * Os_TE_97879 Os_TE_97879 Chr8 18211291 18211290 + RIREX_LTR 8828 0.0959 (283/2951) 0 * Os_TE_97880 Os_TE_97878 Chr8 18211171 18211172 - STOWAWAY12_OS 312 0.0003 (1/2927) 0 * * Os_TE_97871 Chr8 18208700 18208701 + ORSgTETNOOT00908 242 0.6481 (1639/2529) 0 * * Os_TE_97865 Chr8 18206731 18206730 + ORSiTERTOOT00226 792 0.0004 (1/2514) -1 * * Os_TE_97849 Chr8 18201638 18201639 + F524 291 0.0003 (1/2896) 0 * * Os_TE_97843 Chr8 18198914 18198915 + MPING 430 0.0003 (1/2985) 0 * Os_TE_97842 Os_TE_97842 Chr8 18198912 18198911 - MPING 430 0.0003 (1/2988) 0 * Os_TE_97843 Os_TE_97841 Chr8 18198420 18198421 - SZ-22_LTR 4403 0.1579 (469/2970) 0 * Os_TE_97840 Os_TE_97840 Chr8 18198416 18198415 + ORSiTERTOOT00034 791 0.1575 (468/2972) 0 * Os_TE_97841 Os_TE_97837 Chr8 18197281 18197280 - STOWAWAY9_OS 235 0.0003 (1/2993) 0 * Os_TE_97836 Os_TE_97836 Chr8 18197279 18197280 + STOWAWAY9_OS 235 0.0003 (1/2990) 0 * Os_TE_97837 Os_TE_97792 Chr8 18184872 18184873 - INDITTO 263 0.0080 (24/2993) 0 * * Os_TE_97790 Chr8 18184500 18184501 + INDITTO 263 0.0018 (5/2806) 0 * Os_TE_97789 Os_TE_97789 Chr8 18184498 18184497 - INDITTO 263 0.0017 (5/2982) 0 * Os_TE_97790 Os_TE_97764 Chr8 18166660 18166661 - RIRE2_LTR 11306 0.0003 (1/2979) 0 * * Os_TE_97758 Chr8 18165280 18165281 + COPIA2-LTR_OS 6433 0.0014 (4/2960) 0 * Os_TE_97757 Os_TE_97757 Chr8 18165276 18165275 - COPIA2-LTR_OS 6433 0.0013 (4/2963) 0 * Os_TE_97758 Os_TE_97751 Chr8 18162999 18162998 + GYPSY-A_LTR 8951 0.0403 (120/2979) 0 * * Os_TE_97736 Chr8 18161846 18161847 - MPING 430 0.0003 (1/2966) 0 * Os_TE_97735 Os_TE_97735 Chr8 18161844 18161843 + MPING 430 0.0003 (1/2964) 0 * Os_TE_97736 Os_TE_97734 Chr8 18161551 18161552 + RIREX_LTR 8828 0.0003 (1/2960) 0 * Os_TE_97733 Os_TE_97733 Chr8 18161547 18161546 - RIREX_LTR 8828 0.0003 (1/2954) 0 * Os_TE_97734 Os_TE_97732 Chr8 18161157 18161158 - NDNA1TNA_OS 334 0.1048 (312/2977) 0 * Os_TE_97731 Os_TE_97731 Chr8 18161155 18161154 + ORSgTEMT00100531 325 0.1000 (297/2970) 0 * Os_TE_97732 Os_TE_97730 Chr8 18160767 18160768 - MuDR4_OS 7610 0.0641 (192/2995) 0 * * Os_TE_97728 Chr8 18160355 18160356 - SC-8_LTR 4951 0.0003 (1/2994) 0 * Os_TE_97727 Os_TE_97727 Chr8 18160351 18160350 + SC-8_LTR 4951 0.0003 (1/2996) 0 * Os_TE_97728 Os_TE_97724 Chr8 18158232 18158233 - DEBOAT 110 0.0003 (1/2988) 0 * Os_TE_97723 Os_TE_97723 Chr8 18158231 18158230 + DEBOAT 110 0.0003 (1/2985) 0 * Os_TE_97724 Os_TE_97722 Chr8 18156649 18156650 + TWIFB1 3737 0.0007 (2/2871) 0 * * Os_TE_97714 Chr8 18154582 18154583 - ORSgTEMT00600271 529 0.0061 (18/2973) 0 * * Os_TE_97699 Chr8 18150352 18150353 - INDITTO 263 0.0005 (1/1906) -1 * Os_TE_97698 Os_TE_97698 Chr8 18150350 18150349 + INDITTO 263 0.0005 (1/1889) -1 * Os_TE_97699 Os_TE_97693 Chr8 18145929 18145930 - NDNA1TNA_OS 334 0.0007 (2/2977) 0 * Os_TE_97692 Os_TE_97692 Chr8 18145926 18145925 + NDNA1TNA_OS 334 0.0007 (2/2993) 0 * Os_TE_97693 Os_TE_97688 Chr8 18145380 18145381 - NDNA1TNA_OS 334 0.0003 (1/2983) 0 * Os_TE_97687 Os_TE_97687 Chr8 18145374 18145373 + NDNA1TNA_OS 334 0.0003 (1/2982) 0 * Os_TE_97688 Os_TE_97686 Chr8 18145278 18145277 - ORSgTEMT00500520 147 0.0003 (1/2968) 0 * * Os_TE_97684 Chr8 18145223 18145222 - ORSiTERTOOT00273 5419 0.0003 (1/2903) 0 * * Os_TE_97683 Chr8 18145119 18145118 - STOWAWAY12_OS 312 0.0003 (1/2914) 0 * * Os_TE_97682 Chr8 18144904 18144905 - ORSgTETNOOT01930 140 0.0003 (1/2930) 0 * * Os_TE_97678 Chr8 18143269 18143270 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_97677 Os_TE_97677 Chr8 18143265 18143264 - COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_97678 Os_TE_97676 Chr8 18142054 18142055 + COPIA2-LTR_OS 6433 0.0010 (3/2973) 0 * Os_TE_97675 Os_TE_97675 Chr8 18142050 18142049 - COPIA2-LTR_OS 6433 0.0003 (1/2968) 0 * Os_TE_97676 Os_TE_97642 Chr8 18138471 18138472 + NDNA1TNA_OS 334 0.1075 (315/2931) 0 * Os_TE_97641 Os_TE_97641 Chr8 18138469 18138468 - NDNA1TNA_OS 334 0.1120 (331/2956) 0 * Os_TE_97642 Os_TE_97633 Chr8 18137478 18137479 + TRSA_OS 353 0.0004 (1/2404) 0 * * Os_TE_97621 Chr8 18121387 18121386 - DS-RICE2N 613 0.0017 (5/2988) 0 * * Os_TE_97540 Chr8 18096034 18096035 + RIREX_LTR 8828 0.0010 (3/2932) 0 * Os_TE_97539 Os_TE_97539 Chr8 18096013 18096012 - RIREX_LTR 8828 0.0014 (4/2929) 0 * Os_TE_97540 Os_TE_97536 Chr8 18094435 18094434 - DITTO-2 235 0.0003 (1/2990) 0 * * Os_TE_97511 Chr8 18090357 18090356 + TWIFBIG 3567 0.0645 (191/2960) 0 * * Os_TE_97510 Chr8 18090350 18090351 - ORSiTETNOOT00200 3563 0.0632 (187/2961) 0 * Os_TE_97509 Os_TE_97509 Chr8 18090343 18090342 + TWIFBIG 3567 0.0347 (53/1528) 0 * Os_TE_97510 Os_TE_97478 Chr8 18083755 18083754 - RIRE3A_LTR 10580 0.0535 (160/2993) 0 * * Os_TE_97401 Chr8 18066794 18066795 + ORSiTERT00200145 12238 0.0040 (12/2981) 0 * * Os_TE_97397 Chr8 18066359 18066360 - ORSgTEMT00901345 248 0.0013 (4/2992) 0 * * Os_TE_97322 Chr8 18030622 18030623 - TRUNCATOR 2918 0.0963 (279/2897) 0 * * Os_TE_97318 Chr8 18029095 18029096 + NDNA1TNA_OS 334 0.0027 (8/2992) 0 * Os_TE_97317 Os_TE_97317 Chr8 18029094 18029093 - NDNA1TNA_OS 334 0.0027 (8/2995) 0 * Os_TE_97318 Os_TE_97315 Chr8 18028135 18028136 - TYPEM 227 0.0982 (280/2852) 0 * Os_TE_97314 Os_TE_97314 Chr8 18028134 18028133 - ORSgTEMT02400179 221 0.1011 (302/2988) 0 * Os_TE_97315 Os_TE_97313 Chr8 18028120 18028119 - MuDR4_OS 7610 0.0940 (255/2713) 0 * Os_TE_97312 Os_TE_97312 Chr8 18028117 18028118 - MuDR4_OS 7610 0.0879 (249/2834) 0 * Os_TE_97313 Os_TE_97299 Chr8 18024068 18024067 - ORSgTEMT00500773 153 0.0017 (5/2966) 0 * * Os_TE_97288 Chr8 18018720 18018721 - RETRO1_LTR 8314 0.0007 (2/2989) 0 * Os_TE_97287 Os_TE_97287 Chr8 18018716 18018715 + RETRO1_LTR 8314 0.0007 (2/2993) 0 * Os_TE_97288 Os_TE_97285 Chr8 18017662 18017661 + OLO24C 356 0.0017 (5/2962) 0 * * Os_TE_97254 Chr8 18004102 18004103 - RIREX_LTR 8828 0.0006 (1/1781) 0 * Os_TE_97253 Os_TE_97253 Chr8 18004098 18004097 + RIREX_LTR 8828 0.0006 (1/1779) 0 * Os_TE_97254 Os_TE_97252 Chr8 18004064 18004065 + RIRE1_LTR 8322 0.0028 (5/1782) 0 * * Os_TE_97244 Chr8 18001855 18001854 - STOWAWAY9_OS 235 0.0017 (5/2988) 0 * Os_TE_97243 Os_TE_97243 Chr8 18001850 18001851 - ORSgTEMT01400014 209 0.0017 (5/2988) 0 * Os_TE_97244 Os_TE_97236 Chr8 18000445 18000446 - SZ-43LTR 4039 0.0007 (2/2981) 0 * * Os_TE_97234 Chr8 17998612 17998611 + TRUNCATOR 2918 0.0017 (5/2985) 0 * * Os_TE_97230 Chr8 17995921 17995922 - RIRE2_LTR 11306 0.0495 (148/2989) 0 * Os_TE_97229 Os_TE_97229 Chr8 17995917 17995916 - ORSgTERT00201216 11284 0.0498 (149/2989) 0 * Os_TE_97230 Os_TE_97228 Chr8 17995872 17995873 + RIREX_LTR 8828 0.0034 (10/2977) 0 * Os_TE_97227 Os_TE_97227 Chr8 17995868 17995867 - RIREX_LTR 8828 0.0034 (10/2979) 0 * Os_TE_97228 Os_TE_97225 Chr8 17995097 17995096 + ORSgTETNOOT00908 242 0.0003 (1/2990) 0 * * Os_TE_97211 Chr8 17992774 17992773 + RIRE3A_LTR 10580 0.0007 (2/2970) 0 * * Os_TE_97208 Chr8 17990988 17990987 - TRUNCATOR 2918 0.0037 (11/2970) 0 * Os_TE_97207 Os_TE_97207 Chr8 17990987 17990988 + TRUNCATOR 2918 0.0037 (11/2974) 0 * Os_TE_97208 Os_TE_97074 Chr8 17922800 17919846 + TRUNCATOR2_LTR 2904 0.1370 (405/2957) 1 Intact Os_TE_97068 Os_TE_97068 Chr8 17919846 17922800 - TRUNCATOR2_LTR 2904 0.1459 (435/2981) 1 Intact Os_TE_97074 Os_TE_97067 Chr8 17919800 17919801 - CACTA-N 987 0.0003 (1/2979) 0 * * Os_TE_97066 Chr8 17919573 17919574 - SPMLIKE 10989 0.0003 (1/2980) 0 * * Os_TE_97063 Chr8 17918612 17918611 - RIRE3A_LTR 10580 0.0003 (1/2979) 0 * * Os_TE_97033 Chr8 17908166 17908167 - TYPEH 309 0.0003 (1/2993) 0 * * Os_TE_97031 Chr8 17903908 17903909 - UNIQUE 158 0.0004 (1/2792) 0 * Os_TE_97030 Os_TE_97030 Chr8 17903906 17903905 + UNIQUE 158 0.0004 (1/2733) 0 * Os_TE_97031 Os_TE_97019 Chr8 17900129 17900128 + ORSgTETNOOT00012 241 0.0010 (3/2927) 0 * * Os_TE_97014 Chr8 17899479 17899480 - NDNA1TNA_OS 334 0.0156 (46/2958) 0 * * Os_TE_97007 Chr8 17898101 17898102 - COPIA2-LTR_OS 6433 0.0003 (1/2986) 0 * Os_TE_97006 Os_TE_97006 Chr8 17898097 17898096 + COPIA2-LTR_OS 6433 0.0003 (1/2964) 0 * Os_TE_97007 Os_TE_96995 Chr8 17895025 17895024 + ORSgTETNOOT00908 242 0.0406 (121/2980) 0 * * Os_TE_96994 Chr8 17894708 17894709 + CASTAWAY 364 0.0842 (252/2993) 0 * * Os_TE_96992 Chr8 17894495 17894496 - ORSgTEMT01602404 253 0.0003 (1/2939) 0 * * Os_TE_96991 Chr8 17893521 17893520 - TNR2A 152 0.0660 (197/2984) 0 * * Os_TE_96979 Chr8 17889189 17889190 - ENSPM3_OS 10837 0.1010 (299/2961) 0 * Os_TE_96978 Os_TE_96978 Chr8 17889187 17889186 - TNR3 1536 0.0912 (268/2939) 0 * Os_TE_96979 Os_TE_96958 Chr8 17885570 17885571 - RIRE2_LTR 11306 0.0034 (10/2966) 0 * * Os_TE_96955 Chr8 17885459 17885458 - ORSgTEMT01602413 239 0.0003 (1/2962) 0 * Os_TE_96954 Os_TE_96954 Chr8 17885456 17885457 - ORSgTEMT01602413 239 0.0003 (1/2945) 0 * Os_TE_96955 Os_TE_96953 Chr8 17885315 17885316 - ORSgTERT00201216 11284 0.0668 (199/2979) 0 * * Os_TE_96951 Chr8 17885277 17885278 - NDNA1TNA_OS 334 0.0003 (1/2958) 0 * * Os_TE_96933 Chr8 17872095 17872094 + ORSgTEMT00500411 151 0.0003 (1/2982) 0 * * Os_TE_96896 Chr8 17860998 17860997 + COPI2_LTR 4733 0.0007 (2/2969) 0 * * Os_TE_96892 Chr8 17859041 17859040 - ORSgTEMT02000022 194 0.0017 (5/2972) 0 * * Os_TE_96872 Chr8 17851761 17851760 + ORSgTEMT00900230 250 0.7971 (2279/2859) 0 * * Os_TE_96871 Chr8 17851260 17851259 + ORSgTEMT01702268 154 0.7719 (2217/2872) 0 * * Os_TE_96854 Chr8 17843970 17843969 + TWIFBIG 3567 0.0008 (2/2603) 0 * * Os_TE_96840 Chr8 17842428 17842429 + ORSgTEMT00100272 356 0.3519 (1042/2961) 0 * * Os_TE_96838 Chr8 17842045 17842046 - RIREX_LTR 8828 0.0638 (191/2996) 0 * Os_TE_96837 Os_TE_96837 Chr8 17842041 17842040 + RIREX_LTR 8828 0.0631 (189/2994) 0 * Os_TE_96838 Os_TE_96836 Chr8 17841835 17841073 + CACTA-G1 797 0.2472 (700/2832) 1 Intact Os_TE_96835 Os_TE_96835 Chr8 17841073 17841835 - CACTA-G1 797 0.2252 (667/2962) 1 Intact Os_TE_96836 Os_TE_96834 Chr8 17840631 17840630 + RETROSAT2LTRA 3112 0.0037 (11/2990) 0 * * Os_TE_96832 Chr8 17839546 17839545 + OSTE15 1168 0.0004 (1/2786) 0 * * Os_TE_96830 Chr8 17838562 17838561 + DS-RICE3N 525 0.0652 (194/2976) 0 * * Os_TE_96824 Chr8 17832263 17832262 + ORSgTEMT02700001 255 0.3558 (1056/2968) 0 * * Os_TE_96821 Chr8 17831163 17831164 + SC-8_LTR 4951 0.0003 (1/2987) 0 * Os_TE_96820 Os_TE_96820 Chr8 17831159 17831158 - SC-8_LTR 4951 0.0003 (1/2989) 0 * Os_TE_96821 Os_TE_96813 Chr8 17822342 17822164 - STOWAWAY46_OS 154 0.3484 (707/2029) 1 Intact * Os_TE_96811 Chr8 17821403 17821140 + ORSgTETNOOT00221 261 0.3509 (694/1978) 1 Intact * Os_TE_96800 Chr8 17819238 17819085 + ORSgTEMT01701591 154 0.2342 (699/2984) 1 Intact Os_TE_96799 Os_TE_96799 Chr8 17819087 17819236 - STOWAWAY1_OS 149 0.2346 (696/2967) 1 Intact Os_TE_96800 Os_TE_96798 Chr8 17818277 17818278 - KIDDOD 279 0.7658 (2201/2874) 0 * * Os_TE_96794 Chr8 17817646 17817647 + ORSgTEMT00501653 149 0.7682 (2221/2891) 0 * * Os_TE_96780 Chr8 17810847 17810848 + ORSiCMCM00100019 2717 0.1723 (195/1132) 0 * Os_TE_96779 Os_TE_96779 Chr8 17810843 17810842 - TRUNCATOR2_LTR 2904 0.1801 (206/1144) 0 * Os_TE_96780 Os_TE_96778 Chr8 17809688 17809687 - TRUNCATOR 2918 0.0027 (3/1123) 0 * Os_TE_96777 Os_TE_96777 Chr8 17809687 17809688 + TRUNCATOR 2918 0.0026 (3/1141) 0 * Os_TE_96778 Os_TE_96716 Chr8 17783115 17783114 + ORSiCMCM00100019 2717 0.5223 (164/314) -1 * * Os_TE_96645 Chr8 17745035 17745036 - ORSgTEMT00502258 148 0.3024 (297/982) 0 * * Os_TE_96644 Chr8 17744959 17737691 - OSTE33 1012 0.3801 (428/1126) 1 Intact Os_TE_96638 Os_TE_96638 Chr8 17737691 17744960 - OSTE33 1012 0.3845 (428/1113) 1 Intact Os_TE_96644 Os_TE_96637 Chr8 17737646 17737645 + ORSgTEMT00500133 127 0.2650 (292/1102) 0 * Os_TE_96636 Os_TE_96636 Chr8 17737645 17737646 + ORSgTEMT00502094 140 0.2625 (293/1116) 0 * Os_TE_96637 Os_TE_96630 Chr8 17736209 17736210 - COPIA2-LTR_OS 6433 0.0314 (94/2989) 0 * * Os_TE_96627 Chr8 17735815 17735814 + OsSN3 183 0.7422 (2217/2987) 0 * * Os_TE_96620 Chr8 17729190 17729191 + DS-RICE4N 715 0.0045 (13/2902) 0 * * Os_TE_96601 Chr8 17720799 17720800 + RIRE3_LTR 12054 0.0141 (42/2987) 0 * * Os_TE_96551 Chr8 17695470 17695469 - SZ-37_LTR 12001 0.0038 (4/1054) -1 * * Os_TE_96518 Chr8 17690394 17690395 + GYPSY-A_LTR 8951 0.0471 (88/1868) 0 * * Os_TE_96511 Chr8 17688988 17688989 - ORSgTERT00201216 11284 0.0040 (12/2986) 0 * * Os_TE_96504 Chr8 17686953 17686952 + F569 228 0.0655 (183/2792) 0 * * Os_TE_96493 Chr8 17682845 17682844 - RETROSAT2LTR 12796 0.0003 (1/2963) 0 * * Os_TE_96465 Chr8 17672237 17672238 + RIRE1_LTR 8322 0.0017 (5/2972) 0 * * Os_TE_96450 Chr8 17665931 17665932 + ORSgTEMT01602181 239 0.0005 (1/1939) 0 * * Os_TE_96443 Chr8 17664707 17664706 + ORSgTEMT01602181 239 0.0033 (10/2986) 0 * Os_TE_96442 Os_TE_96442 Chr8 17664702 17664703 - ORSgTEMT01601432 239 0.0040 (12/2985) 0 * Os_TE_96443 Os_TE_96430 Chr8 17662372 17662373 + ENSPM5_OS 9581 0.0003 (1/2950) 0 * * Os_TE_96423 Chr8 17658659 17658660 - ORSgTETN00200001 10994 0.0598 (178/2978) 0 * Os_TE_96422 Os_TE_96422 Chr8 17658657 17658656 + SPMLIKE 10989 0.0584 (174/2982) 0 * Os_TE_96423 Os_TE_96403 Chr8 17653899 17653900 - NDNA1TNA_OS 334 0.0003 (1/2946) 0 * * Os_TE_96399 Chr8 17649153 17649154 - SEVERIN-2 1952 0.0043 (13/2991) 0 * Os_TE_96398 Os_TE_96398 Chr8 17649150 17649149 + SEVERIN-2 1952 0.0044 (13/2988) 0 * Os_TE_96399 Os_TE_96390 Chr8 17647829 17648088 - STOWAWAY41_OS 264 0.8816 (2598/2947) 1 Intact * Os_TE_96382 Chr8 17647381 17647380 - ORSgTEMT02400179 221 0.0017 (5/2983) 0 * * Os_TE_96348 Chr8 17633088 17633089 + RETRO1_LTR 8314 0.0007 (2/2972) 0 * Os_TE_96347 Os_TE_96347 Chr8 17633084 17633083 - RETRO1_LTR 8314 0.0007 (2/2972) 0 * Os_TE_96348 Os_TE_96343 Chr8 17628807 17628808 - ORSgTERT00201216 11284 0.0041 (12/2955) 0 * Os_TE_96342 Os_TE_96342 Chr8 17628803 17628802 - RIRE2_LTR 11306 0.0020 (6/2947) 0 * Os_TE_96343 Os_TE_96305 Chr8 17615236 17615237 - ORSgTETN00200001 10994 0.0599 (171/2855) 0 * Os_TE_96304 Os_TE_96304 Chr8 17615234 17615233 + SPMLIKE 10989 0.0617 (176/2854) 0 * Os_TE_96305 Os_TE_96303 Chr8 17615155 17615156 - ORSgTETN00200001 10994 0.0062 (11/1771) 0 * * Os_TE_96302 Chr8 17615139 17615138 - CACTA-B 1103 0.6276 (1815/2892) 0 * * Os_TE_96299 Chr8 17615002 17615003 - TRUNCATOR2_LTR 2904 0.0003 (1/2940) 0 * Os_TE_96298 Os_TE_96298 Chr8 17614998 17614997 + ORSiTERTOOT00028 8600 0.0003 (1/2866) 0 * Os_TE_96299 Os_TE_96294 Chr8 17613575 17613576 + DS-RICE4N 715 0.0136 (38/2796) 0 * * Os_TE_96275 Chr8 17611001 17611000 - ORSgTEMT03800066 376 0.0003 (1/2983) 0 * Os_TE_96274 Os_TE_96274 Chr8 17610990 17610991 + BUHUI 375 0.0003 (1/2984) 0 * Os_TE_96275 Os_TE_96273 Chr8 17610905 17610906 + OSTE33 1012 0.0151 (45/2987) 0 * Os_TE_96272 Os_TE_96272 Chr8 17610896 17610895 + OSTE33 1012 0.0144 (43/2984) 0 * Os_TE_96273 Os_TE_96253 Chr8 17606620 17606619 - RETROSAT2LTR 12796 0.0042 (12/2890) 0 * * Os_TE_96233 Chr8 17597108 17597107 + TRUNCATOR 2918 0.0044 (13/2923) 0 * Os_TE_96232 Os_TE_96232 Chr8 17597107 17597108 - TRUNCATOR 2918 0.0038 (11/2922) 0 * Os_TE_96233 Os_TE_96067 Chr8 17541498 17541499 + MPING 430 0.0003 (1/2961) 0 * Os_TE_96066 Os_TE_96066 Chr8 17541496 17541495 - MPING 430 0.0003 (1/2954) 0 * Os_TE_96067 Os_TE_96065 Chr8 17541442 17541443 - HARB-1_OS 5166 0.0007 (2/2963) 0 * Os_TE_96064 Os_TE_96064 Chr8 17541440 17541439 + HARB-1_OS 5166 0.0003 (1/2968) 0 * Os_TE_96065 Os_TE_96053 Chr8 17537788 17537787 - RIRE2_LTR 11306 0.0017 (5/2994) 0 * * Os_TE_96001 Chr8 17516113 17516114 - F770 284 0.0796 (237/2979) 0 * * Os_TE_95969 Chr8 17498293 17498294 - Cassandra_OS-LTR 764 0.0072 (13/1811) 0 * * Os_TE_95877 Chr8 17464376 17464375 + COPI2_LTR 4733 0.0055 (7/1273) 0 * * Os_TE_95864 Chr8 17455745 17455744 - UNIQUE 158 0.0004 (1/2573) 0 * * Os_TE_95861 Chr8 17455580 17455581 - COPIA3-LTR_OS 5061 0.0004 (1/2597) 0 * * Os_TE_95814 Chr8 17442632 17442631 - CACTA-P 1150 0.0003 (1/2979) 0 * * Os_TE_95810 Chr8 17441078 17441077 - ORSgTETNOOT02156 266 0.0004 (1/2841) 0 * * Os_TE_95807 Chr8 17440706 17440707 + ORSiTERTOOT00421 5200 0.1380 (375/2717) 0 * Os_TE_95806 Os_TE_95806 Chr8 17440702 17440701 - ORSiTERTOOT00421 5200 0.1335 (364/2726) 0 * Os_TE_95807 Os_TE_95786 Chr8 17430377 17430376 + CPSC2_LTR 5202 0.0040 (11/2766) 0 * * Os_TE_95779 Chr8 17426927 17421888 - ORSiTERTOOT00358 4932 0.3183 (875/2749) 1 Intact * Os_TE_95750 Chr8 17411308 17411309 - ORSgTERT00201216 11284 0.3445 (917/2662) 0 * * Os_TE_95740 Chr8 17408902 17408903 - SUSU 279 0.4701 (1260/2680) 0 * Os_TE_95739 Os_TE_95739 Chr8 17408900 17408899 + ORSgTEMT05000092 279 0.4535 (1201/2648) 0 * Os_TE_95740 Os_TE_95737 Chr8 17408355 17408356 - OSTONOR1_LTR 6440 0.0007 (2/2705) 0 * Os_TE_95736 Os_TE_95736 Chr8 17408351 17408350 + OSTONOR1_LTR 6440 0.0007 (2/2703) 0 * Os_TE_95737 Os_TE_95731 Chr8 17407061 17407060 + SZ-36LTR 5825 0.0004 (1/2735) 0 * * Os_TE_95729 Chr8 17406358 17406120 - ORSgTEMT01601432 239 0.3191 (850/2664) 1 Intact Os_TE_95728 Os_TE_95728 Chr8 17406120 17406358 - ORSgTEMT01601696 238 0.3007 (774/2574) 1 Intact Os_TE_95729 Os_TE_95725 Chr8 17405119 17403904 - SZ-5LTR 1223 0.5571 (1521/2730) 1 Intact * Os_TE_95712 Chr8 17395595 17389094 - RIREX_LTR 8828 0.5574 (1515/2718) 1 Intact Os_TE_95702 Os_TE_95702 Chr8 17389094 17395595 + RIREX_LTR 8828 0.5661 (1542/2724) 1 Intact Os_TE_95712 Os_TE_95701 Chr8 17386868 17386869 - NDNA1TNA_OS 334 0.0049 (14/2829) 0 * Os_TE_95700 Os_TE_95700 Chr8 17386866 17386865 + NDNA1TNA_OS 334 0.0051 (14/2729) 0 * Os_TE_95701 Os_TE_95695 Chr8 17385272 17385273 - TYPEU1 380 0.5256 (1436/2732) 0 * * Os_TE_95693 Chr8 17384285 17384286 - MPING 430 0.0004 (1/2739) 0 * Os_TE_95692 Os_TE_95692 Chr8 17384283 17384282 + MPING 430 0.0004 (1/2734) 0 * Os_TE_95693 Os_TE_95678 Chr8 17379836 17372221 + RIREX_LTR 8828 0.2920 (874/2993) 1 Intact Os_TE_95674 Os_TE_95674 Chr8 17372221 17379836 - RIREX_LTR 8828 0.2877 (860/2989) 1 Intact Os_TE_95678 Os_TE_95669 Chr8 17369180 17369179 + TRUNCATOR 2918 0.0060 (18/2985) 0 * Os_TE_95668 Os_TE_95668 Chr8 17369179 17369180 - TRUNCATOR 2918 0.0061 (18/2975) 0 * Os_TE_95669 Os_TE_95666 Chr8 17368908 17368909 + Hopscotch_LTR 4876 0.5644 (1688/2991) 0 * * Os_TE_95663 Chr8 17365332 17365333 - SZ-7A_LTR 11400 0.6389 (1897/2969) 0 * * Os_TE_95642 Chr8 17352760 17355816 - TRUNCATOR2_LTR 2904 0.8387 (967/1153) 1 Intact * Os_TE_95640 Chr8 17352417 17352416 - CACTA-H 1152 0.6081 (1707/2807) 0 * * Os_TE_95605 Chr8 17339552 17339553 - F770 284 0.0027 (4/1465) 0 * Os_TE_95604 Os_TE_95604 Chr8 17339550 17339549 + F770 284 0.0017 (5/2914) 0 * Os_TE_95605 Os_TE_95602 Chr8 17339101 17339100 + ORSgTEMT01601036 240 0.0764 (226/2960) 0 * Os_TE_95601 Os_TE_95601 Chr8 17339099 17339100 - TYPEM 227 0.0764 (226/2959) 0 * Os_TE_95602 Os_TE_95599 Chr8 17338938 17338939 - AMYLTP 383 0.0501 (147/2933) 0 * Os_TE_95598 Os_TE_95598 Chr8 17338930 17338929 + AMYLTP 383 0.0478 (140/2928) 0 * Os_TE_95599 Os_TE_95578 Chr8 17331948 17331949 + SZ-48LTR 3632 0.3250 (966/2972) 0 * Os_TE_95577 Os_TE_95577 Chr8 17331944 17331943 - SZ-48LTR 3632 0.3272 (979/2992) 0.04 * Os_TE_95578 Os_TE_95559 Chr8 17327395 17327394 + TRUNCATOR 2918 0.0064 (19/2956) 0 * * Os_TE_95547 Chr8 17323165 17323166 - MuDR4_OS 7610 0.0003 (1/2988) 0 * * Os_TE_95505 Chr8 17308325 17308326 - ORSiTERT00200154 9386 0.0003 (1/2972) 0 * * Os_TE_95490 Chr8 17303388 17303387 - RIRE2_LTR 11306 0.0008 (2/2625) 0 * * Os_TE_95480 Chr8 17299254 17273705 + ENSPM5_OS 9581 0.3128 (860/2749) 1 Intact Os_TE_95476 Os_TE_95476 Chr8 17273705 17299254 - ENSPM5_OS 9581 0.3163 (873/2760) 1 Intact Os_TE_95480 Os_TE_95475 Chr8 17273571 17273570 + TRUNCATOR 2918 0.0479 (131/2736) 0 * Os_TE_95474 Os_TE_95474 Chr8 17273570 17273571 - TRUNCATOR 2918 0.0456 (125/2743) 0 * Os_TE_95475 Os_TE_95471 Chr8 17272268 17272269 + ORSiRGRR00000001 280 0.0008 (1/1222) -1 * * Os_TE_95467 Chr8 17270756 17270757 + GYPSY1-LTR_OS 8900 0.0004 (1/2659) 0 * Os_TE_95466 Os_TE_95466 Chr8 17270752 17270751 - GYPSY1-LTR_OS 8900 0.0004 (1/2654) 0 * Os_TE_95467 Os_TE_95460 Chr8 17270354 17270355 - MuDR3_OS 8604 0.3114 (664/2132) 0 * Os_TE_95459 Os_TE_95459 Chr8 17270345 17270344 + MuDR3_OS 8604 0.0026 (4/1526) 0 * Os_TE_95460 Os_TE_95458 Chr8 17270274 17270273 + DS-RICE3N 525 0.0208 (46/2216) 0 * * Os_TE_95416 Chr8 17255298 17255299 - RIRE2_LTR 11306 0.0967 (252/2606) 0 * * Os_TE_95330 Chr8 17236213 17235878 + ORSgTEMT00101341 314 0.8581 (2455/2861) 1 Intact * Os_TE_95324 Chr8 17234687 17234686 - OSTE24 683 0.0254 (76/2987) 0 * * Os_TE_95316 Chr8 17226597 17226596 + ORSgTEMT00100272 356 0.0005 (1/1827) 0 * * Os_TE_95314 Chr8 17225192 17225193 + TWIFB1 3737 0.0504 (149/2959) 0 * * Os_TE_95290 Chr8 17209653 17209654 + AMYLTP 383 0.0087 (26/2976) 0 * Os_TE_95289 Os_TE_95289 Chr8 17209645 17209644 - AMYLTP 383 0.0084 (25/2973) 0 * Os_TE_95290 Os_TE_95285 Chr8 17204165 17204164 + GYPSY1-LTR_OS 8900 0.0013 (4/2976) 0 * * Os_TE_95284 Chr8 17203798 17203799 - RETROSAT3_LTR 11537 0.0269 (80/2974) 0 * * Os_TE_95271 Chr8 17197041 17197042 - COPIA2-LTR_OS 6433 0.0003 (1/2978) 0 * Os_TE_95270 Os_TE_95270 Chr8 17197037 17197036 + COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * Os_TE_95271 Os_TE_95265 Chr8 17195964 17195965 + RIREX_LTR 8828 0.0030 (9/2986) 0 * Os_TE_95264 Os_TE_95264 Chr8 17195960 17195959 - RIREX_LTR 8828 0.0027 (8/2987) 0 * Os_TE_95265 Os_TE_95247 Chr8 17184584 17184585 - RIREX_LTR 8828 0.0005 (1/2198) 0 * Os_TE_95246 Os_TE_95246 Chr8 17184580 17184579 + RIREX_LTR 8828 0.0005 (1/2197) 0 * Os_TE_95247 Os_TE_95245 Chr8 17184393 17184394 + RIREX_LTR 8828 0.0005 (1/2151) 0 * Os_TE_95244 Os_TE_95244 Chr8 17184389 17184388 - RIREX_LTR 8828 0.0005 (1/2153) 0 * Os_TE_95245 Os_TE_95227 Chr8 17178290 17178291 - TRUNCATOR2_LTR 2904 0.0288 (86/2989) 0 * Os_TE_95226 Os_TE_95226 Chr8 17178286 17178285 + ORSiCMCM00100019 2717 0.0255 (76/2984) 0 * Os_TE_95227 Os_TE_95225 Chr8 17177806 17177807 - SZ-9LTR 965 0.0013 (4/2977) 0 * * Os_TE_95177 Chr8 17161159 17161158 - ORSgTETN00200001 10994 0.0301 (90/2987) 0 * Os_TE_95176 Os_TE_95176 Chr8 17161158 17161159 + CACTA-B 1103 0.0301 (90/2989) 0 * Os_TE_95177 Os_TE_95174 Chr8 17161136 17161135 - TRUNCATOR2_LTR 2904 0.0044 (13/2957) 0 * * Os_TE_95162 Chr8 17159476 17159475 + ORSgTEMT00800058 376 0.0003 (1/2993) 0 * * Os_TE_95140 Chr8 17155437 17155436 - COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * * Os_TE_95135 Chr8 17153705 17153704 + RETROSAT2LTR 12796 0.0021 (5/2373) 0 * * Os_TE_95126 Chr8 17148680 17148681 + SZ-62LTR 3649 0.0604 (161/2664) 0 * * Os_TE_95103 Chr8 17139275 17139276 + ORSgTEMT00500070 150 0.3428 (992/2894) 0 * Os_TE_95102 Os_TE_95102 Chr8 17139274 17139273 - ORSgTEMT00501711 149 0.4966 (1017/2048) 0 * Os_TE_95103 Os_TE_95100 Chr8 17139049 17139050 + ORSgTETNOOT00032 218 0.0250 (71/2842) 0 * * Os_TE_95098 Chr8 17138746 17138745 - ORSgTEMT01602100 238 0.3398 (1005/2958) 0 * * Os_TE_95094 Chr8 17136228 17136229 - RIREX_LTR 8828 0.0440 (130/2956) 0 * Os_TE_95093 Os_TE_95093 Chr8 17136224 17136223 + RIREX_LTR 8828 0.0432 (129/2989) 0 * Os_TE_95094 Os_TE_95092 Chr8 17135844 17135843 - STOWAWAY44_OS 240 0.0224 (67/2989) 0 * Os_TE_95091 Os_TE_95091 Chr8 17135841 17135842 + STOWAWAY44_OS 240 0.0202 (60/2976) 0 * Os_TE_95092 Os_TE_95066 Chr8 17129404 17129405 - RETRO2_LTR 12874 0.0043 (13/2989) 0 * * Os_TE_95061 Chr8 17128675 17128674 - ORSgTERT00201216 11284 0.0044 (13/2946) 0 * * Os_TE_95046 Chr8 17120164 17120165 + COPIA1-LTR_OS 9292 0.0017 (5/2978) 0 * * Os_TE_95030 Chr8 17115644 17115643 - AMYLTP 383 0.0016 (4/2537) 0 * * Os_TE_95028 Chr8 17115009 17115010 + SZ-9LTR 965 0.0266 (67/2523) 0 * * Os_TE_95026 Chr8 17114622 17114621 + ORSiTEMT00300001 383 0.0008 (2/2539) 0 * * Os_TE_94994 Chr8 17099564 17099565 - RIREX_LTR 8828 0.1845 (497/2694) 0 * * Os_TE_94985 Chr8 17098459 17098458 + RIRE3_LTR 12054 0.1298 (358/2759) 0 * * Os_TE_94936 Chr8 17084775 17084776 + OSTE33 1012 0.0043 (13/2994) 0 * * Os_TE_94929 Chr8 17083073 17083074 + ORSiCMCM00100019 2717 0.0034 (10/2928) 0 * * Os_TE_94903 Chr8 17072284 17072285 - ORSiTERT00200154 9386 0.1488 (441/2963) 0 * Os_TE_94902 Os_TE_94902 Chr8 17072278 17072277 + TRUNCATOR 2918 0.1545 (459/2970) 0 * Os_TE_94903 Os_TE_94891 Chr8 17066487 17066486 - OSLINE1-2 7128 0.0007 (2/2980) 0 * * Os_TE_94881 Chr8 17045709 17045708 + TRUNCATOR 2918 0.0655 (195/2975) 0 * Os_TE_94880 Os_TE_94880 Chr8 17045708 17045709 - TRUNCATOR 2918 0.0597 (177/2966) 0 * Os_TE_94881 Os_TE_94877 Chr8 17045001 17041861 + RIRE3_LTR 12054 0.3259 (862/2645) 1 Solo_LTR * Os_TE_94851 Chr8 17032401 17032402 - RIREX_LTR 8828 0.0032 (9/2847) 0 * Os_TE_94850 Os_TE_94850 Chr8 17032397 17032396 + RIREX_LTR 8828 0.0028 (8/2848) 0 * Os_TE_94851 Os_TE_94849 Chr8 17031750 17031751 - RIRE3_LTR 12054 0.0006 (1/1680) 0 * * Os_TE_94802 Chr8 16997999 16998000 + RIRE2_LTR 11306 0.0037 (11/2950) 0 * Os_TE_94801 Os_TE_94801 Chr8 16997995 16997994 - RIRE2_LTR 11306 0.0041 (12/2953) 0 * Os_TE_94802 Os_TE_94798 Chr8 16996497 16996498 + OSTONOR1_LTR 6440 0.0645 (192/2976) 0 * Os_TE_94797 Os_TE_94797 Chr8 16996493 16996492 - ORSiTERT00100062 5674 0.0652 (194/2975) 0 * Os_TE_94798 Os_TE_94795 Chr8 16996424 16996425 - RIRE3A_LTR 10580 0.0184 (55/2993) 0 * Os_TE_94794 Os_TE_94794 Chr8 16996420 16996419 + RIRE3A_LTR 10580 0.0167 (50/2990) 0 * Os_TE_94795 Os_TE_94776 Chr8 16983939 16983938 - ORSgTEMT01701882 154 0.4126 (1235/2993) 0 * Os_TE_94775 Os_TE_94775 Chr8 16983934 16983935 + STOWAWAY50_OS 174 0.4215 (1260/2989) 0 * Os_TE_94776 Os_TE_94770 Chr8 16981365 16981366 + MPING 430 0.0221 (55/2488) 0 * Os_TE_94769 Os_TE_94769 Chr8 16981363 16981362 - MPING 430 0.0179 (53/2956) 0 * Os_TE_94770 Os_TE_94768 Chr8 16981323 16981324 - MERMITED 1572 0.4187 (1252/2990) 0 * Os_TE_94767 Os_TE_94767 Chr8 16981321 16981320 + MERMITED 1572 0.4713 (1205/2557) 0 * Os_TE_94768 Os_TE_94762 Chr8 16979120 16979121 + SZ-37_LTR 12001 0.4284 (1266/2955) 0 * Os_TE_94761 Os_TE_94761 Chr8 16979116 16979115 - SZ-37_LTR 12001 0.5044 (1264/2506) 0 * Os_TE_94762 Os_TE_94756 Chr8 16977439 16977438 - RETRO2_LTR 12874 0.0008 (2/2611) 0 * * Os_TE_94748 Chr8 16975434 16975433 - ORSgTEMT02400179 221 0.0007 (2/2932) 0 * * Os_TE_94747 Chr8 16975346 16975347 - RIRE2_LTR 11306 0.1746 (319/1827) 0 * Os_TE_94746 Os_TE_94746 Chr8 16975342 16975341 + RIRE2_LTR 11306 0.1095 (311/2840) 0 * Os_TE_94747 Os_TE_94744 Chr8 16974845 16974844 + ORSgTEMT00800058 376 0.0003 (1/2971) 0 * Os_TE_94743 Os_TE_94743 Chr8 16974838 16974839 - AMYLTP 383 0.0003 (1/2984) 0 * Os_TE_94744 Os_TE_94742 Chr8 16974391 16974392 - WANDERER 232 0.3228 (962/2980) 0 * * Os_TE_94734 Chr8 16971741 16971742 - RIREX_LTR 8828 0.0103 (30/2901) 0 * Os_TE_94733 Os_TE_94733 Chr8 16971737 16971736 + RIREX_LTR 8828 0.0106 (31/2911) 0 * Os_TE_94734 Os_TE_94731 Chr8 16971580 16971579 + OSTE21 1271 0.4083 (1191/2917) 0 * Os_TE_94730 Os_TE_94730 Chr8 16971572 16971573 - OSTE21 1271 0.2605 (626/2403) 0 * Os_TE_94731 Os_TE_94693 Chr8 16951223 16951224 - SC-8_LTR 4951 0.4566 (1362/2983) 0 * Os_TE_94692 Os_TE_94692 Chr8 16951219 16951218 + SC-8_LTR 4951 0.4602 (1376/2990) 0 * Os_TE_94693 Os_TE_94685 Chr8 16948722 16948721 - CPR1_LTR 9493 0.0003 (1/2961) 0 * * Os_TE_94668 Chr8 16944185 16944186 - RETROSAT2LTR 12796 0.0362 (105/2904) 0 * * Os_TE_94665 Chr8 16943515 16943516 + ORSiTERTOOT00027 10853 0.0339 (101/2976) 0 * * Os_TE_94661 Chr8 16942913 16942758 - ORSgTEMT01701348 105 0.5664 (1681/2968) 1 Intact Os_TE_94659 Os_TE_94659 Chr8 16942756 16942911 + ORSgTEMT01701999 154 0.5687 (1673/2942) 1 Intact Os_TE_94661 Os_TE_94653 Chr8 16941603 16941604 - RIREX_LTR 8828 0.3202 (946/2954) 0 * Os_TE_94652 Os_TE_94652 Chr8 16941599 16941598 + RIREX_LTR 8828 0.0082 (17/2075) 0 * Os_TE_94653 Os_TE_94572 Chr8 16895045 16895044 + ORSgTEMT00502327 143 0.6101 (1812/2970) 0 * * Os_TE_94569 Chr8 16893884 16893885 - CACTA-H 1152 0.0017 (5/2985) 0 * Os_TE_94568 Os_TE_94568 Chr8 16893882 16893881 + CACTA-I 1124 0.0027 (8/2982) 0 * Os_TE_94569 Os_TE_94562 Chr8 16892101 16892100 + SINE03_OS 360 0.0004 (1/2684) 0 * * Os_TE_94554 Chr8 16890494 16890495 - MERMITE18C 1473 0.0877 (244/2783) 0 * * Os_TE_94551 Chr8 16890200 16890201 + ORSiTERTOOT00034 791 0.0010 (3/2893) 0 * * Os_TE_94549 Chr8 16889969 16889970 + RIREX_LTR 8828 0.0003 (1/2931) 0 * Os_TE_94548 Os_TE_94548 Chr8 16889965 16889964 - RIREX_LTR 8828 0.0003 (1/2933) 0 * Os_TE_94549 Os_TE_94516 Chr8 16884278 16884279 + ORSgTETNOOT00221 261 0.0812 (241/2969) 0 * * Os_TE_94511 Chr8 16882378 16882379 - ORSgTETNOOT01413 258 0.0848 (250/2947) 0 * * Os_TE_94507 Chr8 16882139 16882140 - RIRE2_LTR 11306 0.0003 (1/2964) 0 * Os_TE_94506 Os_TE_94506 Chr8 16882135 16882134 + RIRE2_LTR 11306 0.0007 (2/2966) 0 * Os_TE_94507 Os_TE_94487 Chr8 16878402 16878403 - NDNA1TNA_OS 334 0.0074 (22/2984) 0 * Os_TE_94486 Os_TE_94486 Chr8 16878394 16878393 + NDNA1TNA_OS 334 0.0067 (20/2983) 0 * Os_TE_94487 Os_TE_94484 Chr8 16877334 16877333 + ORSgTEMT01601122 212 0.0037 (11/2962) 0 * Os_TE_94483 Os_TE_94483 Chr8 16877333 16877334 + STOWAWAY21_OS 243 0.0040 (12/2972) 0 * Os_TE_94484 Os_TE_94482 Chr8 16877039 16877040 + CACTA-M 1129 0.0516 (154/2987) 0 * Os_TE_94481 Os_TE_94481 Chr8 16877037 16877036 - ORSgTETN00200001 10994 0.0519 (155/2987) 0 * Os_TE_94482 Os_TE_94473 Chr8 16871810 16871809 + CLOUD-3 550 0.0018 (5/2822) 0 * Os_TE_94472 Os_TE_94472 Chr8 16871743 16871744 - TREP215 239 0.0067 (19/2837) 0 * Os_TE_94473 Os_TE_94466 Chr8 16869390 16869391 - CACTA-H 1152 0.0098 (18/1837) 0 * * Os_TE_94465 Chr8 16869132 16869131 + ENSPM_OS 9843 0.3595 (993/2762) 0 * * Os_TE_94463 Chr8 16868925 16868926 + DS-RICE3N 525 0.0029 (5/1718) 0 * * Os_TE_94450 Chr8 16867812 16867813 - ENSPM4_OS 11610 0.4190 (1237/2952) 0 * * Os_TE_94442 Chr8 16860984 16860985 - CLOUD-6 508 0.4789 (1261/2633) 0 * * Os_TE_94440 Chr8 16859034 16860370 - SZ-20LTR 1395 0.5488 (1455/2651) 1 Intact * Os_TE_94439 Chr8 16858496 16858497 + DS-RICE3N 525 0.0030 (4/1332) 0 * * Os_TE_94433 Chr8 16851784 16851785 - DS-RICE2N 613 0.0218 (34/1563) 0 * * Os_TE_94358 Chr8 16801820 16801821 - RIREX_LTR 8828 0.0033 (6/1823) 0 * Os_TE_94357 Os_TE_94357 Chr8 16801816 16801815 + RIREX_LTR 8828 0.0033 (6/1817) 0 * Os_TE_94358 Os_TE_94318 Chr8 16785237 16785238 + RIREX_LTR 8828 0.2797 (502/1795) 0 * Os_TE_94317 Os_TE_94317 Chr8 16785233 16785232 - RIREX_LTR 8828 0.2789 (499/1789) 0 * Os_TE_94318 Os_TE_94315 Chr8 16784314 16785122 - COPIA2-LTR_OS 6433 0.6097 (1820/2985) 1 Solo_LTR * Os_TE_94284 Chr8 16762146 16762145 - RIRE3A_LTR 10580 0.0065 (15/2305) 0 * * Os_TE_94257 Chr8 16748935 16748934 - SEVERIN-2 1952 0.4177 (1230/2945) 0 * * Os_TE_94229 Chr8 16736614 16736613 + COPIA1-LTR_OS 9292 0.0017 (5/2910) 0 * * Os_TE_94226 Chr8 16735790 16735789 - MPING 430 0.0003 (1/2981) 0 * * Os_TE_94223 Chr8 16734294 16735372 + CACTA-K 1131 0.2267 (635/2801) 1 Intact * Os_TE_94222 Chr8 16733503 16732291 - SZ-5LTR 1223 0.2079 (541/2602) 1 Intact Os_TE_94211 Os_TE_94211 Chr8 16727968 16733503 + COPIA1-LTR_OS 9292 0.2301 (651/2829) 1 Intact Os_TE_94222 Os_TE_94207 Chr8 16726521 16726522 + ORSgTEMT01400032 215 0.6106 (1722/2820) 0 * * Os_TE_94203 Chr8 16725816 16725817 + STOWAWAY51_OS 246 0.1663 (448/2694) 0 * Os_TE_94202 Os_TE_94202 Chr8 16725814 16725813 + ORSgTEMT01600726 235 0.0008 (2/2365) 0 * Os_TE_94203 Os_TE_94201 Chr8 16725445 16725206 - ORSgTEMT01601432 239 0.3870 (1079/2788) 1 Intact Os_TE_94200 Os_TE_94200 Chr8 16725206 16725445 + ORSgTEMT01602181 239 0.3893 (1088/2795) 1 Intact Os_TE_94201 Os_TE_94197 Chr8 16724760 16705922 + SPMLIKE 10989 0.3762 (1117/2969) 1 Intact Os_TE_94173 Os_TE_94173 Chr8 16705922 16724760 - ORSgTETN00200001 10994 0.3719 (1055/2837) 1 Intact Os_TE_94197 Os_TE_94172 Chr8 16705876 16705875 + ORSgTEMT01602665 238 0.5792 (1473/2543) 0 * * Os_TE_94169 Chr8 16705740 16705741 - ORSgTEMT02600002 356 0.0014 (4/2932) 0 * * Os_TE_94168 Chr8 16705471 16704545 + OSTE33 1012 0.1282 (381/2973) 1 Intact Os_TE_94167 Os_TE_94167 Chr8 16704545 16705471 - OSTE33 1012 0.1266 (376/2971) 1 Intact Os_TE_94168 Os_TE_94166 Chr8 16704316 16704317 + AMYLTP 383 0.0010 (3/2960) 0 * * Os_TE_94165 Chr8 16704264 16704263 - STOWAWAY9_OS 235 0.0013 (4/2970) 0 * Os_TE_94164 Os_TE_94164 Chr8 16704263 16704264 + ORSgTEMT01400031 216 0.0013 (4/2967) 0 * Os_TE_94165 Os_TE_94162 Chr8 16700893 16700894 - ORSgTETN00200001 10994 0.4850 (1210/2495) 0 * Os_TE_94161 Os_TE_94161 Chr8 16700891 16700890 + SPMLIKE 10989 0.5620 (1646/2929) 0 * Os_TE_94162 Os_TE_94160 Chr8 16700860 16700859 - RIRE3_LTR 12054 0.0907 (236/2602) 0 * * Os_TE_94159 Chr8 16700806 16700807 - RIREX_LTR 8828 0.0025 (7/2772) 0 * Os_TE_94158 Os_TE_94158 Chr8 16700802 16700801 + RIREX_LTR 8828 0.0025 (7/2838) 0 * Os_TE_94159 Os_TE_94157 Chr8 16700765 16700764 + ORSgTEMT00502094 140 0.6334 (1864/2943) 0 * Os_TE_94156 Os_TE_94156 Chr8 16700761 16700762 - ORSgTEMT00501126 153 0.6400 (1904/2975) 0 * Os_TE_94157 Os_TE_94153 Chr8 16700502 16700354 + GAIJIN 147 0.3759 (1121/2982) 1 Intact * Os_TE_94150 Chr8 16699486 16685111 - OSTE14 885 0.3819 (1117/2925) 1 Intact * Os_TE_94148 Chr8 16698706 16686059 + RETRO2_LTR 12874 0.3283 (368/1121) 1 Intact * Os_TE_94133 Chr8 16685109 16699484 - OSTE14 885 0.3763 (1124/2987) 1 Intact * Os_TE_94132 Chr8 16684017 16683588 + MPING 430 0.0136 (40/2946) 1 Intact Os_TE_94131 Os_TE_94131 Chr8 16683588 16684017 - MPING 430 0.0372 (42/1129) 1 Intact Os_TE_94132 Os_TE_94130 Chr8 16683091 16683092 + MPING 430 0.0003 (1/2986) 0 * Os_TE_94129 Os_TE_94129 Chr8 16683089 16683088 - MPING 430 0.0003 (1/2987) 0 * Os_TE_94130 Os_TE_94128 Chr8 16682802 16682801 - COPI2_LTR 4733 0.0003 (1/2989) 0 * * Os_TE_94126 Chr8 16682068 16670776 - ORSgTERT00201216 11284 0.3717 (1098/2954) 1 Intact * Os_TE_94103 Chr8 16670291 16670290 - ORSgTEMT01601432 239 0.0830 (247/2976) 0 * Os_TE_94102 Os_TE_94102 Chr8 16670288 16670289 + ORSgTEMT01602181 239 0.0836 (248/2965) 0 * Os_TE_94103 Os_TE_94093 Chr8 16669643 16669644 + SEVERIN-2 1952 0.0176 (51/2896) 0 * * Os_TE_94092 Chr8 16669119 16669120 - RETRO2_LTR 12874 0.0061 (7/1140) 0 * * Os_TE_94089 Chr8 16668298 16668299 - Cassandra_OS-LTR 764 0.0066 (8/1204) 0 * Os_TE_94088 Os_TE_94088 Chr8 16668294 16668293 + Cassandra_OS-LTR 764 0.0028 (8/2877) 0 * Os_TE_94089 Os_TE_94087 Chr8 16668256 16668050 + OsSN3 183 0.6497 (1311/2018) 1 Intact * Os_TE_94075 Chr8 16665176 16665175 - MERMITE18B 1306 0.0428 (46/1074) 0 * * Os_TE_94073 Chr8 16664180 16664181 - SZ-48LTR 3632 0.0363 (43/1183) 0 * * Os_TE_94063 Chr8 16661047 16649757 + RIRE2_LTR 11306 0.2560 (395/1543) 1 Intact * Os_TE_94055 Chr8 16649524 16649756 + ORSgTEMT01602609 233 0.3897 (1087/2789) 1 Intact * Os_TE_94054 Chr8 16648735 16648425 - NONAME 312 0.4009 (1124/2804) 1 Intact * Os_TE_94050 Chr8 16647392 16647393 - TRUNCATOR2_LTR 2904 0.1107 (310/2801) 0 * * Os_TE_94037 Chr8 16645515 16645105 - ORSgTEMT00300122 416 0.7943 (1058/1332) 1 Intact * Os_TE_93994 Chr8 16626267 16625937 + ORSgTEMT01900006 305 0.3920 (1014/2587) 1 Intact Os_TE_93992 Os_TE_93992 Chr8 16625936 16626262 - TYPEH 309 0.4335 (1069/2466) 1 Intact Os_TE_93994 Os_TE_93986 Chr8 16622735 16622736 + SZ-44LTR 1408 0.5869 (1526/2600) 0 * * Os_TE_93983 Chr8 16622073 16622072 + RETROSAT2LTRA 3112 0.0653 (189/2893) 0 * * Os_TE_93981 Chr8 16621558 16621559 + CRMA1_LTR 7543 0.6437 (1910/2967) 0 * * Os_TE_93979 Chr8 16618923 16618924 + RIREX_LTR 8828 0.0030 (9/2994) 0 * Os_TE_93978 Os_TE_93978 Chr8 16618919 16618918 - RIREX_LTR 8828 0.0030 (9/2992) 0 * Os_TE_93979 Os_TE_93956 Chr8 16612983 16613470 + OSTE20 496 0.2731 (801/2933) 1 Intact * Os_TE_93949 Chr8 16611024 16611025 + TRUNCATOR 2918 0.0804 (223/2772) 0 * * Os_TE_93948 Chr8 16610681 16610682 - RIREX_LTR 8828 0.0849 (236/2780) 0 * Os_TE_93947 Os_TE_93947 Chr8 16610677 16610676 + RIREX_LTR 8828 0.0506 (136/2686) 0 * Os_TE_93948 Os_TE_93946 Chr8 16610379 16610380 - RIREX_LTR 8828 0.0024 (7/2918) 0 * Os_TE_93945 Os_TE_93945 Chr8 16610375 16610374 - RIREX_LTR 8828 0.0034 (10/2972) 0 * Os_TE_93946 Os_TE_93940 Chr8 16608868 16608869 + NDNA1TNA_OS 334 0.0530 (153/2886) 0 * Os_TE_93939 Os_TE_93939 Chr8 16608866 16608865 - NDNA1TNA_OS 334 0.0548 (155/2829) 0 * Os_TE_93940 Os_TE_93928 Chr8 16604936 16596470 - ORSgTETN00200001 10994 0.8867 (2488/2806) 1 Intact * Os_TE_93914 Chr8 16596459 16596460 + ORSgTEMT01600300 235 0.0649 (189/2914) 0 * * Os_TE_93911 Chr8 16596255 16596256 + MDR2 6967 0.0522 (156/2988) 0 * Os_TE_93910 Os_TE_93910 Chr8 16596247 16596246 - MDR2 6967 0.0512 (153/2987) 0 * Os_TE_93911 Os_TE_93888 Chr8 16589363 16589364 + SPMLIKE 10989 0.0003 (1/2992) 0 * Os_TE_93887 Os_TE_93887 Chr8 16589361 16589360 - ORSgTETN00200001 10994 0.0007 (2/2989) 0 * Os_TE_93888 Os_TE_93884 Chr8 16589124 16589123 + COPI2_LTR 4733 0.0020 (6/2988) 0 * * Os_TE_93835 Chr8 16560930 16560931 + CASGRANDA 465 0.0060 (18/2983) 0 * Os_TE_93834 Os_TE_93834 Chr8 16560928 16560927 - CASGRANDA 465 0.0060 (18/2988) 0 * Os_TE_93835 Os_TE_93821 Chr8 16557495 16557494 - RETRO2_LTR 12874 0.0167 (48/2882) 0 * * Os_TE_93819 Chr8 16557188 16557187 + COPIA2-LTR_OS 6433 0.0004 (1/2483) 0 * * Os_TE_93779 Chr8 16545811 16545810 + OSTE1 801 0.0004 (1/2846) 0 * * Os_TE_93764 Chr8 16537839 16534271 - MuDR4_OS 7610 0.1318 (393/2981) 1 Intact * Os_TE_93761 Chr8 16533645 16533646 + INDITTO 263 0.0007 (2/2988) 0 * Os_TE_93760 Os_TE_93760 Chr8 16533643 16533642 - INDITTO 263 0.0007 (2/2993) 0 * Os_TE_93761 Os_TE_93757 Chr8 16533581 16533582 + MPING 430 0.0007 (2/2988) 0 * Os_TE_93756 Os_TE_93756 Chr8 16533579 16533578 - MPING 430 0.0007 (2/2991) 0 * Os_TE_93757 Os_TE_93755 Chr8 16532936 16532937 + ORSiTERTOOT00028 8600 0.0702 (78/1111) -1 * * Os_TE_93750 Chr8 16532206 16532207 + NDNA1TNA_OS 334 0.0027 (8/2969) 0 * Os_TE_93749 Os_TE_93749 Chr8 16532205 16532204 - ORSgTEMT00100582 334 0.0027 (8/2974) 0 * Os_TE_93750 Os_TE_93745 Chr8 16531391 16531392 + ORSgTETNOOT00908 242 0.0051 (15/2918) 0 * * Os_TE_93725 Chr8 16515103 16515102 - TYPEM 227 0.0689 (205/2975) 0 * Os_TE_93724 Os_TE_93724 Chr8 16515102 16515103 - ORSgTEMT02400246 177 0.0668 (199/2981) 0 * Os_TE_93725 Os_TE_93722 Chr8 16514730 16514729 + OSTE15 1168 0.0017 (5/2983) 0 * * Os_TE_93719 Chr8 16511007 16511006 + ORSgTETNOOT00908 242 0.0160 (48/2997) 0 * * Os_TE_93707 Chr8 16493312 16500599 - OSTE33 1012 0.1973 (588/2980) 1 Intact * Os_TE_93682 Chr8 16487585 16487586 - SZ-9LTR 965 0.0672 (201/2989) 0 * * Os_TE_93668 Chr8 16480483 16480484 + Cassandra_OS-LTR 764 0.0020 (6/2992) 0 * Os_TE_93667 Os_TE_93667 Chr8 16480479 16480478 - Cassandra_OS-LTR 764 0.0013 (4/2991) 0 * Os_TE_93668 Os_TE_93644 Chr8 16468919 16468918 - ORSgTEMT02400246 177 0.0734 (219/2985) 0 * * Os_TE_93601 Chr8 16453695 16453696 - TRUNCATOR2_LTR 2904 0.0662 (198/2992) 0 * Os_TE_93600 Os_TE_93600 Chr8 16453691 16453690 + ORSiCMCM00100019 2717 0.0633 (189/2988) 0 * Os_TE_93601 Os_TE_93598 Chr8 16452485 16452486 + ORSiTERTOOT00027 10853 0.0033 (10/2998) 0 * Os_TE_93597 Os_TE_93597 Chr8 16452481 16452480 - RIRE3A_LTR 10580 0.0033 (10/2998) 0 * Os_TE_93598 Os_TE_93596 Chr8 16452288 16452289 + SPMLIKE 10989 0.0003 (1/2999) 0 * * Os_TE_93491 Chr8 16402279 16402280 + RIREX_LTR 8828 0.0726 (217/2990) 0 * Os_TE_93490 Os_TE_93490 Chr8 16402275 16402274 - RIREX_LTR 8828 0.0719 (215/2991) 0 * Os_TE_93491 Os_TE_93481 Chr8 16400842 16400841 + ORSiCMCM00100019 2717 0.0013 (4/2963) 0 * * Os_TE_93480 Chr8 16400826 16400827 - RIRE3_LTR 12054 0.0164 (49/2982) 0 * * Os_TE_93464 Chr8 16399387 16399388 + RETROSAT2LTRA 3112 0.0794 (236/2972) 0 * Os_TE_93463 Os_TE_93463 Chr8 16399383 16399382 - RETROSAT3_LTR 11537 0.0780 (232/2973) 0 * Os_TE_93464 Os_TE_93462 Chr8 16398489 16397573 - CACTA-L 1162 0.3658 (1009/2758) 1 Intact * Os_TE_93456 Chr8 16397416 16396310 + ORSiTEMT06800002 376 0.3541 (972/2745) 1 Intact Os_TE_93453 Os_TE_93453 Chr8 16396308 16397413 + CACTA-D 1038 0.3663 (1021/2787) 1 Intact Os_TE_93456 Os_TE_93448 Chr8 16394394 16394395 - SZ-5LTR 1223 0.5813 (1731/2978) 0 * Os_TE_93447 Os_TE_93447 Chr8 16394390 16394389 + COPIA1-LTR_OS 9292 0.5402 (1491/2760) 0 * Os_TE_93448 Os_TE_93445 Chr8 16393117 16393118 + COPI2_LTR 4733 0.0003 (1/2991) 0 * * Os_TE_93423 Chr8 16379248 16379247 + F770 284 0.0025 (7/2746) 0 * * Os_TE_93418 Chr8 16378941 16378940 - ENSPM4_OS 11610 0.0793 (214/2700) 0 * * Os_TE_93416 Chr8 16378581 16378582 + TELIA 141 0.1808 (234/1294) 0 * Os_TE_93415 Os_TE_93415 Chr8 16378573 16378572 - TELIA 141 0.0842 (250/2970) 0 * Os_TE_93416 Os_TE_93410 Chr8 16378153 16378152 - ORSgTEMT00501653 149 0.0007 (2/2720) 0 * * Os_TE_93408 Chr8 16377449 16377448 + GYPSY-B_LTR 7068 0.5796 (1707/2945) 0 * * Os_TE_93405 Chr8 16376192 16376191 - MuDR-5_OS 17471 0.0013 (4/2972) 0 * * Os_TE_93404 Chr8 16375820 16375821 + TOUNJ-30 377 0.0892 (266/2983) 0 * Os_TE_93403 Os_TE_93403 Chr8 16375818 16375817 - TOUNJ-30 377 0.0245 (69/2815) 0 * Os_TE_93404 Os_TE_93402 Chr8 16375671 16375672 - OSTE24 683 0.0111 (33/2964) 0 * Os_TE_93401 Os_TE_93401 Chr8 16375661 16375660 - OSTE24 683 0.0089 (26/2912) 0 * Os_TE_93402 Os_TE_93394 Chr8 16370019 16370020 + OSTE20 496 0.0405 (117/2887) 0 * Os_TE_93393 Os_TE_93393 Chr8 16370015 16370014 - OSTE20 496 0.0437 (119/2725) 0 * Os_TE_93394 Os_TE_93390 Chr8 16366621 16366622 + AMYLTP 383 0.0418 (125/2991) 0 * Os_TE_93389 Os_TE_93389 Chr8 16366613 16366612 - AMYLTP 383 0.0401 (120/2990) 0 * Os_TE_93390 Os_TE_93383 Chr8 16364191 16364192 + COPI1_LTR 4721 0.5805 (1738/2994) 0 * * Os_TE_93380 Chr8 16363482 16363483 - COWARD 200 0.0046 (13/2832) 0 * * Os_TE_93378 Chr8 16363292 16363293 - SUSU 279 0.4671 (1157/2477) 0 * Os_TE_93377 Os_TE_93377 Chr8 16363290 16363289 + ORSgTEMT05000092 279 0.5753 (1711/2974) 0 * Os_TE_93378 Os_TE_93376 Chr8 16363253 16363254 - SUSU 279 0.0017 (5/2987) 0 * * Os_TE_93367 Chr8 16358821 16358822 - RIREX_LTR 8828 0.0639 (191/2989) 0 * Os_TE_93366 Os_TE_93366 Chr8 16358817 16358816 + RIREX_LTR 8828 0.0640 (191/2986) 0 * Os_TE_93367 Os_TE_93365 Chr8 16358401 16358402 - RIRE2_LTR 11306 0.0164 (48/2921) 0 * Os_TE_93364 Os_TE_93364 Chr8 16358397 16358396 + RIRE2_LTR 11306 0.0156 (46/2957) 0 * Os_TE_93365 Os_TE_93363 Chr8 16358011 16358012 - BAJIELTR 4500 0.0044 (13/2941) 0 * Os_TE_93362 Os_TE_93362 Chr8 16358007 16358006 + BAJIELTR 4500 0.0044 (13/2943) 0 * Os_TE_93363 Os_TE_93355 Chr8 16356833 16356834 - DITTO 244 0.0184 (25/1357) 0 * Os_TE_93354 Os_TE_93354 Chr8 16356832 16356831 - ORSgTEMT00901345 248 0.5757 (1714/2977) 0 * Os_TE_93355 Os_TE_93353 Chr8 16356827 16356828 - ORSgTEMT00900145 249 0.0067 (9/1337) 0 * * Os_TE_93352 Chr8 16356718 16356719 + RIRE3_LTR 12054 0.0637 (190/2985) 0 * Os_TE_93351 Os_TE_93351 Chr8 16356714 16356713 - RIRE3_LTR 12054 0.0652 (194/2974) 0 * Os_TE_93352 Os_TE_93346 Chr8 16355416 16355417 - ORSgTETNOOT01930 140 0.5678 (1659/2922) 0 * * Os_TE_93340 Chr8 16355086 16355087 + STOWAWAY20_OS 278 0.5620 (1572/2797) 0 * * Os_TE_93338 Chr8 16353587 16353588 - RIREX_LTR 8828 0.0686 (201/2928) 0 * * Os_TE_93335 Chr8 16353329 16352977 - ORSgTEMT00600085 364 0.4328 (1292/2985) 1 Intact Os_TE_93332 Os_TE_93332 Chr8 16352977 16353328 + CASTAWAY 364 0.4353 (1303/2993) 1 Intact Os_TE_93335 Os_TE_93317 Chr8 16346319 16346320 - RIREX_LTR 8828 0.0027 (8/2988) 0 * Os_TE_93316 Os_TE_93316 Chr8 16346315 16346314 + RIREX_LTR 8828 0.0027 (8/2984) 0 * Os_TE_93317 Os_TE_93308 Chr8 16339899 16339898 + ORSgTEMT00500512 153 0.6823 (2010/2946) 0 * * Os_TE_93307 Chr8 16339560 16339304 - ORSgTETNOOT00593 233 0.3238 (965/2980) 1 Intact Os_TE_93304 Os_TE_93304 Chr8 16339304 16339560 + ORSgTETNOOT02577 232 0.3164 (935/2955) 1 Intact Os_TE_93307 Os_TE_93303 Chr8 16339289 16339290 - AMYLTP 383 0.0014 (4/2959) 0 * Os_TE_93302 Os_TE_93302 Chr8 16339281 16339280 + AMYLTP 383 0.0008 (2/2418) 0 * Os_TE_93303 Os_TE_93299 Chr8 16338364 16338365 - ORSgTERT00201216 11284 0.0034 (10/2968) 0 * Os_TE_93298 Os_TE_93298 Chr8 16338360 16338359 - RIRE2_LTR 11306 0.0040 (12/2968) 0 * Os_TE_93299 Os_TE_93286 Chr8 16335385 16335225 + ORSgTEMT01700637 157 0.3124 (925/2961) 1 Intact Os_TE_93283 Os_TE_93283 Chr8 16335225 16335376 + ORSgTEMT01702111 154 0.3200 (935/2922) 1 Intact Os_TE_93286 Os_TE_93281 Chr8 16334809 16335027 - ORSgTEMT00900595 216 0.7075 (658/930) 1 Intact * Os_TE_93279 Chr8 16333899 16333898 + ORSgTEMT00502094 140 0.0728 (215/2955) 0 * Os_TE_93278 Os_TE_93278 Chr8 16333891 16333892 - ORSgTEMT00501356 145 0.2326 (221/950) 0 * Os_TE_93279 Os_TE_93275 Chr8 16331844 16331845 + RIREX_LTR 8828 0.1826 (509/2788) 0 * * Os_TE_93274 Chr8 16331505 16331506 - SZ-55_LTR 10318 0.0617 (180/2915) 0 * * Os_TE_93273 Chr8 16330781 16330782 + COPI2_LTR 4733 0.0311 (87/2796) 0 * Os_TE_93272 Os_TE_93272 Chr8 16330777 16330776 - COPI2_LTR 4733 0.0315 (88/2793) 0 * Os_TE_93273 Os_TE_93271 Chr8 16330505 16330506 - RIREX_LTR 8828 0.1807 (509/2817) 0 * Os_TE_93270 Os_TE_93270 Chr8 16330501 16330500 + RIREX_LTR 8828 0.1832 (516/2817) 0 * Os_TE_93271 Os_TE_93257 Chr8 16324272 16324273 + ENSPM4_OS 11610 0.0142 (42/2968) 0 * * Os_TE_93196 Chr8 16311830 16311829 - SEVERIN-2 1952 0.0098 (29/2965) 0 * * Os_TE_93191 Chr8 16310280 16310279 + ORSgTEMT00502094 140 0.0084 (25/2967) 0 * * Os_TE_93185 Chr8 16307403 16307402 - CLOUD-3 550 0.1337 (389/2909) 0 * * Os_TE_92992 Chr8 16237239 16237238 + RIRE3_LTR 12054 0.0004 (1/2405) 0 * Os_TE_92991 Os_TE_92991 Chr8 16237235 16237236 - RIRE3_LTR 12054 0.0024 (1/424) 0 * Os_TE_92992 Os_TE_92988 Chr8 16236423 16236424 + AMYLTP 383 0.2484 (160/644) 0 * * Os_TE_92987 Chr8 16236032 16236031 + ORSgTEMT01602181 239 0.2420 (152/628) 0 * Os_TE_92986 Os_TE_92986 Chr8 16236029 16236030 - ORSgTEMT01601432 239 0.2213 (135/610) 0 * Os_TE_92987 Os_TE_92941 Chr8 16212042 16212043 + AMYLTP 383 0.0020 (1/490) 0 * * Os_TE_92881 Chr8 16181890 16181889 + DS-RICE4N 715 0.5979 (910/1522) 0 * * Os_TE_92811 Chr8 16144734 16145095 + ORSgTEMT00900230 250 0.8951 (350/391) 1 Intact * Os_TE_92780 Chr8 16132806 16132807 - RIRE3_LTR 12054 0.1570 (76/484) 0 * * Os_TE_92765 Chr8 16123698 16123697 - RIRE3A_LTR 10580 0.0111 (5/449) 0 * * Os_TE_92675 Chr8 16075213 16075214 - RETRO2_LTR 12874 0.0095 (5/526) 0 * Os_TE_92674 Os_TE_92674 Chr8 16075209 16075208 + ORSgTERTOOT00009 12852 0.0056 (3/533) 0 * Os_TE_92675 Os_TE_92630 Chr8 16056855 16056856 + DS-RICE4N 715 0.4460 (1317/2953) 0 * * Os_TE_92606 Chr8 16049347 16049348 + SZ-67LTR 1540 0.0007 (2/2995) 0 * * Os_TE_92604 Chr8 16047805 16047806 - ORSgTEMT00500974 146 0.0009 (2/2137) 0 * * Os_TE_92565 Chr8 16033528 16033529 - COPIA2-LTR_OS 6433 0.0044 (12/2736) 0 * Os_TE_92564 Os_TE_92564 Chr8 16033524 16033523 + COPIA2-LTR_OS 6433 0.0041 (11/2716) 0 * Os_TE_92565 Os_TE_92559 Chr8 16032358 16032359 - RIRE2_LTR 11306 0.0011 (3/2712) 0 * * Os_TE_92541 Chr8 16029718 16029717 - RETRO2_LTR 12874 0.0007 (2/2907) 0 * * Os_TE_92521 Chr8 16016881 16028351 - ORSgTETN00200001 10994 0.2823 (773/2738) 1 Intact * Os_TE_92474 Chr8 16000658 16000659 - ORSgTETN00200001 10994 0.0491 (145/2954) 0 * Os_TE_92473 Os_TE_92473 Chr8 16000656 16000655 + SPMLIKE 10989 0.0502 (148/2950) 0 * Os_TE_92474 Os_TE_92441 Chr8 15993631 15993632 - AMYLTP 383 0.1556 (414/2661) 0 * * Os_TE_92433 Chr8 15991584 15991585 + MPING 430 0.0027 (8/2964) 0 * Os_TE_92432 Os_TE_92432 Chr8 15991582 15991581 - MPING 430 0.0030 (9/2961) 0 * Os_TE_92433 Os_TE_92430 Chr8 15991459 15991460 - ORSgTEMT01601696 238 0.0014 (4/2956) 0 * * Os_TE_92412 Chr8 15986358 15986359 - AMYLTP 383 0.1703 (502/2948) 0 * Os_TE_92411 Os_TE_92411 Chr8 15986350 15986349 + AMYLTP 383 0.1694 (492/2905) 0 * Os_TE_92412 Os_TE_92408 Chr8 15985889 15985890 + STOWAWAY9_OS 235 0.0095 (27/2831) 0 * Os_TE_92407 Os_TE_92407 Chr8 15985888 15985887 - STOWAWAY9_OS 235 0.0117 (33/2832) 0 * Os_TE_92408 Os_TE_92385 Chr8 15977531 15977532 + SZ-36LTR 5825 0.0704 (208/2953) 0 * Os_TE_92384 Os_TE_92384 Chr8 15977527 15977526 - SZ-36LTR 5825 0.0711 (210/2952) 0 * Os_TE_92385 Os_TE_92380 Chr8 15973044 15973045 - TNR3 1536 0.0018 (5/2789) 0 * * Os_TE_92330 Chr8 15953764 15953765 - SZ-5LTR 1223 0.0017 (5/2954) 0 * Os_TE_92329 Os_TE_92329 Chr8 15953760 15953759 + COPIA1-LTR_OS 9292 0.0017 (5/2955) 0 * Os_TE_92330 Os_TE_92327 Chr8 15953467 15953466 - ORSiTERTOOT00074 4935 0.0017 (5/2959) 0 * * Os_TE_92293 Chr8 15935706 15935705 - ORSgTEMT01601208 238 0.0013 (4/2994) 0 * * Os_TE_92191 Chr8 15892721 15895722 + TRUNCATOR 2918 0.1213 (362/2984) 1 Intact * Os_TE_92048 Chr8 15823238 15823239 + RIRE1_LTR 8322 0.0007 (2/2778) 0 * * Os_TE_92047 Chr8 15823071 15823072 - RIREX_LTR 8828 0.0054 (15/2789) 0 * Os_TE_92046 Os_TE_92046 Chr8 15823067 15823066 + RIREX_LTR 8828 0.0050 (14/2789) 0 * Os_TE_92047 Os_TE_92029 Chr8 15814377 15814378 - ORSgTERT00201216 11284 0.0014 (4/2847) 0 * * Os_TE_91970 Chr8 15794871 15789722 + Mudr5_OS 5952 0.7003 (2054/2933) 1 Intact * Os_TE_91969 Chr8 15790306 15790307 - ORSgTEMT01400014 209 0.0047 (10/2135) 0 * * Os_TE_91967 Chr8 15789721 15794866 + Mudr5_OS 5952 0.7065 (2094/2964) 1 Intact * Os_TE_91966 Chr8 15789532 15776621 - RETRO2A_LTR 12895 0.1157 (334/2888) 1 Intact * Os_TE_91949 Chr8 15775645 15775644 - SEVERIN-2 1952 0.0040 (12/2977) 0 * * Os_TE_91885 Chr8 15746633 15746634 - TRUNCATOR2_LTR 2904 0.0003 (1/2976) 0 * * Os_TE_91878 Chr8 15746131 15746130 + STOWAWAY21_OS 243 0.0003 (1/2903) 0 * * Os_TE_91874 Chr8 15743300 15743301 - COPI2_LTR 4733 0.0003 (1/2968) 0 * Os_TE_91873 Os_TE_91873 Chr8 15743296 15743295 + COPI2_LTR 4733 0.0003 (1/2954) 0 * Os_TE_91874 Os_TE_91866 Chr8 15740760 15740761 - COPIA2-LTR_OS 6433 0.0003 (1/2907) 0 * * Os_TE_91854 Chr8 15737693 15737694 + SZ-22_LTR 4403 0.0003 (1/2972) 0 * Os_TE_91853 Os_TE_91853 Chr8 15737689 15737688 - SZ-22_LTR 4403 0.0003 (1/2979) 0 * Os_TE_91854 Os_TE_91842 Chr8 15737070 15737069 - ORSgTEMT01600639 228 0.0259 (77/2972) 0 * * Os_TE_91836 Chr8 15735541 15735540 - HARB-1_OS 5166 0.0007 (2/2747) 0 * * Os_TE_91830 Chr8 15734981 15734980 + TELIA 141 0.0003 (1/2952) 0 * * Os_TE_91812 Chr8 15727359 15727358 - EnSpm-13_OS 11171 0.0023 (7/2991) 0 * * Os_TE_91782 Chr8 15714680 15714681 - SC-3_LTR 5748 0.0668 (199/2981) 0 * Os_TE_91781 Os_TE_91781 Chr8 15714676 15714675 + ORSiTERTOOT00296 5553 0.0674 (201/2983) 0 * Os_TE_91782 Os_TE_91774 Chr8 15710539 15710538 + ORSgTEMT01400039 200 0.2297 (675/2938) 0 * Os_TE_91773 Os_TE_91773 Chr8 15710536 15710537 + ORSgTEMT01400003 213 0.2260 (658/2911) 0 * Os_TE_91774 Os_TE_91770 Chr8 15709951 15709952 - RIREX_LTR 8828 0.0003 (1/2908) 0 * * Os_TE_91742 Chr8 15703869 15703870 - COPI2_LTR 4733 0.0003 (1/2985) 0 * Os_TE_91741 Os_TE_91741 Chr8 15703865 15703864 + COPI2_LTR 4733 0.0003 (1/2979) 0 * Os_TE_91742 Os_TE_91740 Chr8 15703716 15703717 - RIREX_LTR 8828 0.0040 (12/2995) 0 * Os_TE_91739 Os_TE_91739 Chr8 15703712 15703711 + RIREX_LTR 8828 0.0040 (12/2994) 0 * Os_TE_91740 Os_TE_91703 Chr8 15688850 15688851 + COPI2_LTR 4733 0.0004 (1/2735) 0 * * Os_TE_91701 Chr8 15688798 15688799 + TWIFBIG 3567 0.0901 (264/2929) 0 * Os_TE_91700 Os_TE_91700 Chr8 15688791 15688790 - ORSiTETNOOT00216 3569 0.0200 (55/2750) 0 * Os_TE_91701 Os_TE_91696 Chr8 15685871 15685872 - HARB-1_OS 5166 0.3578 (1068/2985) 0 * Os_TE_91695 Os_TE_91695 Chr8 15685869 15685868 + HARB-1_OS 5166 0.3581 (1069/2985) 0 * Os_TE_91696 Os_TE_91692 Chr8 15685281 15685280 - HARB-1_OS 5166 0.0003 (1/2955) 0 * * Os_TE_91673 Chr8 15674950 15674951 - RIREX_LTR 8828 0.0003 (1/2980) 0 * Os_TE_91672 Os_TE_91672 Chr8 15674946 15674945 + RIREX_LTR 8828 0.0003 (1/2952) 0 * Os_TE_91673 Os_TE_91671 Chr8 15674317 15674318 - SEVERIN-2 1952 0.0064 (18/2832) 0 * Os_TE_91670 Os_TE_91670 Chr8 15674315 15674314 + SEVERIN-2 1952 0.0063 (18/2842) 0 * Os_TE_91671 Os_TE_91668 Chr8 15673364 15673365 + ORSiCMCM00100019 2717 0.0057 (17/2991) 0 * Os_TE_91667 Os_TE_91667 Chr8 15673360 15673359 - TRUNCATOR2_LTR 2904 0.0063 (19/2993) 0 * Os_TE_91668 Os_TE_91645 Chr8 15664747 15664746 - DITAIL 271 0.0003 (1/2944) 0 * * Os_TE_91589 Chr8 15635317 15635316 + RIREX_LTR 8828 0.0013 (4/2988) 0 * * Os_TE_91579 Chr8 15633491 15633492 - NDNA1TNA_OS 334 0.0567 (170/2997) 0 * Os_TE_91578 Os_TE_91578 Chr8 15633488 15633487 + NDNA1TNA_OS 334 0.0580 (174/2998) 0 * Os_TE_91579 Os_TE_91572 Chr8 15632651 15632650 - SEVERIN-2 1952 0.0523 (156/2981) 0 * * Os_TE_91562 Chr8 15629682 15629683 + HARB-1_OS 5166 0.0010 (3/2988) 0 * Os_TE_91561 Os_TE_91561 Chr8 15629680 15629679 - HARB-1_OS 5166 0.0010 (3/2980) 0 * Os_TE_91562 Os_TE_91547 Chr8 15623881 15623882 + ORSiCMCM00100019 2717 0.0540 (162/2998) 0 * * Os_TE_91544 Chr8 15622871 15622870 - NDNA1TNA_OS 334 0.0686 (200/2915) 0 * * Os_TE_91523 Chr8 15617862 15617861 + TRUNCATOR2_LTR 2904 0.0118 (34/2887) 0 * * Os_TE_91509 Chr8 15614362 15614363 - RIRE2_LTR 11306 0.0061 (18/2974) 0 * Os_TE_91508 Os_TE_91508 Chr8 15614358 15614357 - ORSgTERT00201216 11284 0.0057 (17/2972) 0 * Os_TE_91509 Os_TE_91507 Chr8 15614320 15614321 + COPIA2-LTR_OS 6433 0.0010 (3/2973) 0 * Os_TE_91506 Os_TE_91506 Chr8 15614316 15614315 - COPIA2-LTR_OS 6433 0.0013 (4/2982) 0 * Os_TE_91507 Os_TE_91504 Chr8 15608806 15608805 + SEVERIN-2 1952 0.0057 (17/2983) 0 * * Os_TE_91503 Chr8 15608694 15608695 - RIRE5-LTR_OS 6427 0.0881 (264/2995) 0 * Os_TE_91502 Os_TE_91502 Chr8 15608687 15608686 + RIRE5-LTR_OS 6427 0.0840 (251/2987) 0 * Os_TE_91503 Os_TE_91499 Chr8 15607432 15607433 + RIRE5-LTR_OS 6427 0.0057 (17/2975) 0 * Os_TE_91498 Os_TE_91498 Chr8 15607424 15607423 - RIRE5-LTR_OS 6427 0.0057 (17/2970) 0 * Os_TE_91499 Os_TE_91483 Chr8 15602119 15602120 + RETRO1_LTR 8314 0.0461 (138/2996) 0 * Os_TE_91482 Os_TE_91482 Chr8 15602115 15602114 - RETRO1_LTR 8314 0.0467 (140/2997) 0 * Os_TE_91483 Os_TE_91438 Chr8 15585539 15585540 - SZ-22_LTR 4403 0.0144 (43/2982) 0 * * Os_TE_91424 Chr8 15579643 15579642 + GYPSY-A_LTR 8951 0.0458 (137/2989) 0 * * Os_TE_91271 Chr8 15503299 15503298 - COPIA2-LTR_OS 6433 0.0003 (1/2968) 0 * * Os_TE_91268 Chr8 15503147 15503148 - COPI2_LTR 4733 0.0003 (1/2897) 0 * * Os_TE_91241 Chr8 15490582 15490583 - MERMITEA 1710 0.0014 (4/2882) 0 * * Os_TE_91229 Chr8 15488259 15488260 + GYPSY-A_LTR 8951 0.0003 (1/2986) 0 * Os_TE_91228 Os_TE_91228 Chr8 15488255 15488254 - GYPSY-A_LTR 8951 0.0003 (1/2988) 0 * Os_TE_91229 Os_TE_91226 Chr8 15486981 15486982 + AMYLTP 383 0.0647 (180/2784) 0 * Os_TE_91225 Os_TE_91225 Chr8 15486973 15486972 - AMYLTP 383 0.1175 (345/2937) 0 * Os_TE_91226 Os_TE_91222 Chr8 15485832 15485833 - SC-7_LTR 4431 0.5743 (1713/2983) 0 * * Os_TE_91215 Chr8 15484436 15484435 + COPI2_LTR 4733 0.0003 (1/2980) 0 * * Os_TE_91213 Chr8 15484262 15484261 + MuDR4_OS 7610 0.0010 (3/2977) 0 * * Os_TE_91197 Chr8 15476119 15476120 + ORSgTETNOOT02019 240 0.6563 (1938/2953) 0 * Os_TE_91196 Os_TE_91196 Chr8 15476117 15476116 + ORSgTETNOOT00908 242 0.6540 (1922/2939) 0 * Os_TE_91197 Os_TE_91193 Chr8 15474272 15474273 + ORSgTETNOOT00032 218 0.0007 (2/2953) 0 * * Os_TE_91181 Chr8 15472045 15472044 - TRUNCATOR2_LTR 2904 0.0038 (5/1326) 0 * * Os_TE_91175 Chr8 15469142 15469143 - TNR2A 152 0.0007 (2/2952) 0 * * Os_TE_91165 Chr8 15466391 15466392 + ORSgTEMT05000092 279 0.0019 (5/2590) 0 * Os_TE_91164 Os_TE_91164 Chr8 15466389 15466388 - SUSU 279 0.0014 (4/2928) 0 * Os_TE_91165 Os_TE_91154 Chr8 15457518 15457519 - RETRO2_LTR 12874 0.0023 (7/2991) 0 * Os_TE_91153 Os_TE_91153 Chr8 15457514 15457513 + RETRO2_LTR 12874 0.0023 (7/2988) 0 * Os_TE_91154 Os_TE_91130 Chr8 15450686 15450685 + ORSgTEMT01701056 154 0.0004 (1/2765) 0 * * Os_TE_91126 Chr8 15445990 15445991 + ORSiTERTOOT00296 5553 0.5513 (1649/2991) 0 * Os_TE_91125 Os_TE_91125 Chr8 15445986 15445985 - SC-3_LTR 5748 0.5506 (1648/2993) 0 * Os_TE_91126 Os_TE_91118 Chr8 15440775 15440776 - SC-8_LTR 4951 0.0003 (1/2956) 0 * Os_TE_91117 Os_TE_91117 Chr8 15440771 15440770 + ORSiTERTOOT00381 4988 0.0003 (1/2953) 0 * Os_TE_91118 Os_TE_91072 Chr8 15425691 15425692 - CLOUD 734 0.0007 (2/2912) 0 * * Os_TE_91056 Chr8 15422487 15422488 - ORSiTERT00200154 9386 0.0577 (166/2876) 0 * * Os_TE_91035 Chr8 15401844 15401843 - SZ-22_LTR 4403 0.0725 (210/2897) 0 * * Os_TE_91032 Chr8 15401072 15401073 + TRUNCATOR 2918 0.0003 (1/2977) 0 * * Os_TE_91024 Chr8 15396199 15396200 - SC-3_LTR 5748 0.0003 (1/2990) 0 * * Os_TE_91020 Chr8 15393525 15393526 - SC-3_LTR 5748 0.0007 (2/2985) 0 * Os_TE_91019 Os_TE_91019 Chr8 15393521 15393520 + ORSiTERTOOT00296 5553 0.0010 (3/2988) 0 * Os_TE_91020 Os_TE_91003 Chr8 15387997 15387998 - TNR2A 152 0.6336 (1887/2978) 0 * * Os_TE_90973 Chr8 15380841 15380842 + MPING 430 0.0017 (5/2962) 0 * * Os_TE_90956 Chr8 15377439 15377438 + STOWAWAY51_OS 246 0.0003 (1/2964) 0 * Os_TE_90955 Os_TE_90955 Chr8 15377433 15377434 + ORSgTEMT01601591 242 0.0003 (1/2947) 0 * Os_TE_90956 Os_TE_90935 Chr8 15371744 15371745 + ORSgTETNOOT00032 218 0.0917 (272/2966) 0 * * Os_TE_90927 Chr8 15370392 15370393 - MPING 430 0.0003 (1/2960) 0 * Os_TE_90926 Os_TE_90926 Chr8 15370390 15370389 + MPING 430 0.0003 (1/2961) 0 * Os_TE_90927 Os_TE_90913 Chr8 15366604 15366605 + SINE1OS 127 0.0057 (17/2986) 0 * * Os_TE_90897 Chr8 15362805 15362804 + ENSPM4_OS 11610 0.0017 (5/2978) 0 * * Os_TE_90865 Chr8 15350895 15350894 - STOWAWAY51_OS 246 0.0010 (3/2957) 0 * * Os_TE_90841 Chr8 15334318 15334317 + SC-10_LTR 4920 0.0061 (17/2791) 0 * * Os_TE_90804 Chr8 15317687 15317686 - TRUNCATOR 2918 0.0488 (143/2929) 0 * Os_TE_90803 Os_TE_90803 Chr8 15317686 15317687 + TRUNCATOR 2918 0.0508 (149/2934) 0 * Os_TE_90804 Os_TE_90802 Chr8 15315843 15315844 + ORSiTERT00200145 12238 0.0008 (1/1292) 0 * * Os_TE_90793 Chr8 15312388 15312389 - RIRE5-LTR_OS 6427 0.0060 (18/2988) 0 * Os_TE_90792 Os_TE_90792 Chr8 15312379 15312378 + RIRE5-LTR_OS 6427 0.0060 (18/2988) 0 * Os_TE_90793 Os_TE_90785 Chr8 15309413 15309412 + DS-RICE4N 715 0.0003 (1/2992) 0 * * Os_TE_90751 Chr8 15294923 15294924 - TRUNCATOR 2918 0.0007 (2/2993) 0 * * Os_TE_90726 Chr8 15289329 15289330 - RIREX_LTR 8828 0.0003 (1/2947) 0 * Os_TE_90725 Os_TE_90725 Chr8 15289325 15289324 + RIREX_LTR 8828 0.0003 (1/2933) 0 * Os_TE_90726 Os_TE_90706 Chr8 15280130 15280131 + SZ-36LTR 5825 0.0677 (202/2983) 0 * Os_TE_90705 Os_TE_90705 Chr8 15280126 15280125 - SZ-36LTR 5825 0.0680 (203/2984) 0 * Os_TE_90706 Os_TE_90702 Chr8 15279534 15279535 - ORSgTEMT02400246 177 0.0007 (2/2996) 0 * * Os_TE_90693 Chr8 15274329 15274328 + COPIA2-LTR_OS 6433 0.0003 (1/2883) 0 * * Os_TE_90691 Chr8 15273307 15273308 + MuDR2_OS 6770 0.0254 (76/2988) 0 * Os_TE_90690 Os_TE_90690 Chr8 15273298 15273297 - MuDR2_OS 6770 0.0241 (72/2985) 0 * Os_TE_90691 Os_TE_90679 Chr8 15270231 15270232 + RETRO2_LTR 12874 0.1619 (477/2947) 0 * * Os_TE_90668 Chr8 15264140 15264141 - SC-8_LTR 4951 0.0003 (1/2975) 0 * Os_TE_90667 Os_TE_90667 Chr8 15264136 15264135 + ORSiTERTOOT00381 4988 0.0003 (1/2975) 0 * Os_TE_90668 Os_TE_90663 Chr8 15263080 15263081 + ORSiTERTOOT00296 5553 0.0003 (1/2986) 0 * Os_TE_90662 Os_TE_90662 Chr8 15263076 15263075 - SC-3_LTR 5748 0.0007 (2/2987) 0 * Os_TE_90663 Os_TE_90647 Chr8 15254847 15241936 - RETRO1_LTR 8314 0.0381 (96/2520) 1 Intact Os_TE_90646 Os_TE_90646 Chr8 15241936 15254847 + RETRO2A_LTR 12895 0.0351 (91/2590) 1 Intact Os_TE_90647 Os_TE_90609 Chr8 15231995 15231495 - MuDR4_OS 7610 0.0323 (96/2972) 1 Intact * Os_TE_90545 Chr8 15213025 15213026 + RETRO2_LTR 12874 0.5058 (1314/2598) 0 * * Os_TE_90541 Chr8 15212030 15212029 + MuDR2_OS 6770 0.0020 (6/2949) 0 * * Os_TE_90531 Chr8 15201081 15201080 + TRUNCATOR 2918 0.0327 (95/2909) 0 * Os_TE_90530 Os_TE_90530 Chr8 15201080 15201081 - TRUNCATOR 2918 0.0306 (89/2904) 0 * Os_TE_90531 Os_TE_90498 Chr8 15185114 15183623 + ORSiCMCM00100015 9077 0.0328 (98/2985) 1 Solo_LTR * Os_TE_90464 Chr8 15171579 15171580 - TRUNCATOR2_LTR 2904 0.0007 (2/2984) 0 * Os_TE_90463 Os_TE_90463 Chr8 15171575 15171574 + TRUNCATOR2_LTR 2904 0.0007 (2/2986) 0 * Os_TE_90464 Os_TE_90427 Chr8 15163105 15155357 - RIRE2_LTR 11306 0.0318 (95/2989) 1 Intact Os_TE_90420 Os_TE_90420 Chr8 15155357 15163105 + RIRE2_LTR 11306 0.0311 (93/2992) 1 Intact Os_TE_90427 Os_TE_90381 Chr8 15126075 15126076 + SC-3_LTR 5748 0.0020 (6/2977) 0 * Os_TE_90380 Os_TE_90380 Chr8 15126071 15126070 - SC-3_LTR 5748 0.0020 (6/2977) 0 * Os_TE_90381 Os_TE_90378 Chr8 15125687 15125688 + SC-8_LTR 4951 0.0003 (1/2976) 0 * Os_TE_90377 Os_TE_90377 Chr8 15125683 15125682 - SC-8_LTR 4951 0.0003 (1/2978) 0 * Os_TE_90378 Os_TE_90341 Chr8 15110446 15110445 - TRUNCATOR 2918 0.0611 (182/2980) 0 * * Os_TE_90339 Chr8 15109795 15109796 - COPIA2-LTR_OS 6433 0.0003 (1/2980) 0 * Os_TE_90338 Os_TE_90338 Chr8 15109791 15109790 + COPIA2-LTR_OS 6433 0.0003 (1/2970) 0 * Os_TE_90339 Os_TE_90328 Chr8 15103795 15103796 - SC-3_LTR 5748 0.0134 (40/2982) 0 * Os_TE_90327 Os_TE_90327 Chr8 15103791 15103790 + ORSiTERTOOT00296 5553 0.0137 (41/2986) 0 * Os_TE_90328 Os_TE_90320 Chr8 15102385 15102386 - SC-3_LTR 5748 0.0013 (4/2982) 0 * Os_TE_90319 Os_TE_90319 Chr8 15102381 15102380 + ORSiTERTOOT00296 5553 0.0013 (4/2981) 0 * Os_TE_90320 Os_TE_90318 Chr8 15101909 15101910 + ORSiTERTOOT00296 5553 0.0003 (1/2984) 0 * Os_TE_90317 Os_TE_90317 Chr8 15101905 15101904 - SC-3_LTR 5748 0.0003 (1/2987) 0 * Os_TE_90318 Os_TE_90301 Chr8 15095201 15095200 - SC-3_LTR 5748 0.0007 (2/2996) 0 * * Os_TE_90263 Chr8 15082784 15082783 + OSTE15 1168 0.5219 (1562/2993) 0 * * Os_TE_90226 Chr8 15064565 15064566 + SC-8_LTR 4951 0.0010 (3/2960) 0 * Os_TE_90225 Os_TE_90225 Chr8 15064561 15064560 - SC-8_LTR 4951 0.0010 (3/2953) 0 * Os_TE_90226 Os_TE_90223 Chr8 15061255 15061254 + ORSgTETNOOT00908 242 0.0020 (6/2984) 0 * * Os_TE_90215 Chr8 15058023 15057489 + MuDR4_OS 7610 0.5867 (673/1147) 1 Intact Os_TE_90214 Os_TE_90214 Chr8 15057489 15058023 - MuDR4_OS 7610 0.5860 (661/1128) 1 Intact Os_TE_90215 Os_TE_90196 Chr8 15042544 15055500 - RETRO2_LTR 12874 0.0369 (110/2980) 1 Intact * Os_TE_90193 Chr8 15042126 15042125 + RETRO2_LTR 12874 0.0060 (18/2997) 0 * * Os_TE_90192 Chr8 15041953 15041952 + TRUNCATOR 2918 0.0007 (2/2993) 0 * Os_TE_90191 Os_TE_90191 Chr8 15041952 15041953 - TRUNCATOR 2918 0.0007 (2/2990) 0 * Os_TE_90192 Os_TE_90149 Chr8 15019668 15019667 - ORSgTEMT02400246 177 0.6783 (1921/2832) 0 * * Os_TE_90147 Chr8 15018067 15018068 - RIREX_LTR 8828 0.0163 (49/2997) 0 * * Os_TE_90143 Chr8 15014741 15014742 - ORSiTERTOOT00441 4741 0.0007 (2/2960) 0 * * Os_TE_90119 Chr8 15008111 15008112 - COPI2_LTR 4733 0.0003 (1/2919) 0 * Os_TE_90118 Os_TE_90118 Chr8 15008107 15008106 + COPI2_LTR 4733 0.0003 (1/2910) 0 * Os_TE_90119 Os_TE_90110 Chr8 15006976 15006977 + CRM-LTR_OS 7749 0.1767 (519/2937) 0 * Os_TE_90109 Os_TE_90109 Chr8 15006972 15006971 - CRM-LTR_OS 7749 0.1838 (543/2955) 0 * Os_TE_90110 Os_TE_90108 Chr8 15006809 15006810 + RIREX_LTR 8828 0.0003 (1/2940) 0 * * Os_TE_90095 Chr8 14998903 14998902 + SEVERIN-2 1952 0.0004 (1/2677) 0 * * Os_TE_90088 Chr8 14994101 14994100 - CACTA-H 1152 0.1611 (478/2968) 0 * * Os_TE_90078 Chr8 14985410 14985411 - DNAUN1_OS 408 0.0003 (1/2977) 0 * * Os_TE_90073 Chr8 14981552 14981551 + ORSgTEMT01601122 212 0.0027 (8/2991) 0 * * Os_TE_90056 Chr8 14975812 14975813 - AMYLTP 383 0.0007 (2/2993) 0 * Os_TE_90055 Os_TE_90055 Chr8 14975803 14975802 + AMYLTP 383 0.0007 (2/2988) 0 * Os_TE_90056 Os_TE_90052 Chr8 14975025 14975024 - STOWAWAY44_OS 240 0.0003 (1/2965) 0 * Os_TE_90051 Os_TE_90051 Chr8 14975022 14975023 - STOWAWAY44_OS 240 0.0003 (1/2956) 0 * Os_TE_90052 Os_TE_90045 Chr8 14973996 14973997 + RIREX_LTR 8828 0.0003 (1/2981) 0 * * Os_TE_90021 Chr8 14957800 14957801 + RIRE3_LTR 12054 0.2815 (614/2181) 0.62 * * Os_TE_90009 Chr8 14947495 14947494 - MERMITE18C 1473 0.0011 (2/1744) -1 * * Os_TE_90005 Chr8 14944447 14944448 - RETRO1_LTR 8314 0.5184 (1537/2965) 0 * Os_TE_90004 Os_TE_90004 Chr8 14944443 14944442 + RETRO2A_LTR 12895 0.5180 (1540/2973) 0 * Os_TE_90005 Os_TE_89934 Chr8 14930800 14930801 - MDR2 6967 0.0158 (47/2979) 0 * * Os_TE_89924 Chr8 14927348 14927349 + TRUNCATOR 2918 0.0853 (253/2967) 0 * * Os_TE_89907 Chr8 14922472 14922473 + RIRE3_LTR 12054 0.1166 (348/2985) 0 * Os_TE_89906 Os_TE_89906 Chr8 14922468 14922467 - RIRE3_LTR 12054 0.1181 (353/2989) 0 * Os_TE_89907 Os_TE_89877 Chr8 14907373 14907372 - RETROSAT2LTR 12796 0.0003 (1/2963) 0 * * Os_TE_89828 Chr8 14876767 14876768 + MuDR4_OS 7610 0.0007 (1/1520) 0 * * Os_TE_89708 Chr8 14790182 14790183 + DS-RICE4N 715 0.0381 (114/2989) 0 * * Os_TE_89706 Chr8 14785593 14785594 - TRUNCATOR2_LTR 2904 0.0003 (1/2982) 0 * * Os_TE_89686 Chr8 14766499 14775570 + HELITRON8_OS 8831 0.0377 (112/2974) 1 Intact * Os_TE_89680 Chr8 14764674 14764673 - COPI2_LTR 4733 0.0004 (1/2734) 0 * * Os_TE_89663 Chr8 14755310 14755311 + SC-8_LTR 4951 0.0007 (2/2990) 0 * Os_TE_89662 Os_TE_89662 Chr8 14755306 14755305 - SC-8_LTR 4951 0.0007 (2/2988) 0 * Os_TE_89663 Os_TE_89659 Chr8 14751887 14751888 - SC-3_LTR 5748 0.0003 (1/2989) 0 * * Os_TE_89648 Chr8 14742638 14742639 - SC-3_LTR 5748 0.0003 (1/2996) 0 * * Os_TE_89640 Chr8 14739268 14739269 + ORSiTERTOOT00296 5553 0.0085 (25/2934) 0 * Os_TE_89639 Os_TE_89639 Chr8 14739264 14739263 - SC-3_LTR 5748 0.0085 (25/2936) 0 * Os_TE_89640 Os_TE_89638 Chr8 14738454 14738453 - ORSgTEMT02400034 225 0.0362 (101/2788) 0 * * Os_TE_89629 Chr8 14735147 14735148 - RETRO2A_LTR 12895 0.5166 (1512/2927) 0 * Os_TE_89628 Os_TE_89628 Chr8 14735144 14735143 + RETRO2_LTR 12874 0.5195 (1535/2955) 0 * Os_TE_89629 Os_TE_89623 Chr8 14733306 14733307 + ORSiTERTOOT00226 792 0.0003 (1/2988) 0 * Os_TE_89622 Os_TE_89622 Chr8 14733302 14733301 - SZ-22_LTR 4403 0.0003 (1/2965) 0 * Os_TE_89623 Os_TE_89598 Chr8 14727319 14727320 + SC-3_LTR 5748 0.0017 (5/2905) 0 * Os_TE_89597 Os_TE_89597 Chr8 14727315 14727314 - SC-3_LTR 5748 0.0017 (5/2911) 0 * Os_TE_89598 Os_TE_89595 Chr8 14723567 14723568 + CASTAWAY 364 0.0841 (250/2972) 0 * Os_TE_89594 Os_TE_89594 Chr8 14723565 14723564 - CASTAWAY 364 0.0842 (249/2956) 0 * Os_TE_89595 Os_TE_89576 Chr8 14720635 14720636 - RIREX_LTR 8828 0.0003 (1/2981) 0 * Os_TE_89575 Os_TE_89575 Chr8 14720631 14720630 + RIREX_LTR 8828 0.0003 (1/2985) 0 * Os_TE_89576 Os_TE_89572 Chr8 14719496 14719497 + COPIA2-LTR_OS 6433 0.0013 (4/2993) 0 * Os_TE_89571 Os_TE_89571 Chr8 14719492 14719491 - COPIA2-LTR_OS 6433 0.0013 (4/2991) 0 * Os_TE_89572 Os_TE_89565 Chr8 14718191 14718190 + ORSgTEMT01601122 212 0.0013 (4/2981) 0 * * Os_TE_89560 Chr8 14716467 14716468 - SC-3_LTR 5748 0.0003 (1/2995) 0 * Os_TE_89559 Os_TE_89559 Chr8 14716463 14716462 + ORSiTERTOOT00296 5553 0.0003 (1/2996) 0 * Os_TE_89560 Os_TE_89558 Chr8 14715079 14715078 - TRUNCATOR 2918 0.0017 (5/2997) 0 * Os_TE_89557 Os_TE_89557 Chr8 14715078 14715079 + TRUNCATOR 2918 0.0017 (5/2991) 0 * Os_TE_89558 Os_TE_89548 Chr8 14709165 14709166 + COPIA2-LTR_OS 6433 0.0003 (1/2885) 0 * Os_TE_89547 Os_TE_89547 Chr8 14709161 14709160 - COPIA2-LTR_OS 6433 0.0003 (1/2889) 0 * Os_TE_89548 Os_TE_89522 Chr8 14697720 14697721 + ORSiTERTOOT00028 8600 0.0003 (1/2888) 0 * Os_TE_89521 Os_TE_89521 Chr8 14697716 14697715 - TRUNCATOR2_LTR 2904 0.0003 (1/2888) 0 * Os_TE_89522 Os_TE_89519 Chr8 14697201 14697202 + ORSiCMCM00100019 2717 0.6267 (1820/2904) 0 * Os_TE_89518 Os_TE_89518 Chr8 14697197 14697196 - TRUNCATOR2_LTR 2904 0.6313 (1820/2883) 0 * Os_TE_89519 Os_TE_89478 Chr8 14672965 14672966 + TWIFBIG 3567 0.0395 (118/2985) 0 * Os_TE_89477 Os_TE_89477 Chr8 14672958 14672957 - ORSiTETNOOT00200 3563 0.0454 (136/2993) 0 * Os_TE_89478 Os_TE_89449 Chr8 14666502 14666503 + ORSiCMCM00100019 2717 0.0023 (7/2994) 0 * Os_TE_89448 Os_TE_89448 Chr8 14666498 14666497 - TRUNCATOR2_LTR 2904 0.0023 (7/2997) 0 * Os_TE_89449 Os_TE_89442 Chr8 14664074 14664075 - SZ-22_LTR 4403 0.0017 (5/2996) 0 * * Os_TE_89417 Chr8 14652771 14641427 - ORSgTERT00201216 11284 0.0932 (108/1159) 1 Intact * Os_TE_89397 Chr8 14639088 14616940 + TRUNCATOR 2918 0.0980 (115/1173) 1 Intact Os_TE_89381 Os_TE_89381 Chr8 14616935 14639088 - TRUNCATOR 2918 0.0976 (114/1168) 1 Intact Os_TE_89397 Os_TE_89366 Chr8 14610405 14610406 - ORSgTERT00201216 11284 0.0376 (112/2982) 0 * Os_TE_89365 Os_TE_89365 Chr8 14610401 14610400 - RIRE2_LTR 11306 0.0379 (113/2983) 0 * Os_TE_89366 Os_TE_89353 Chr8 14605216 14605217 + OSCOPIA1_LTR 4754 0.0007 (2/2983) 0 * * Os_TE_89306 Chr8 14581682 14581683 - RIREX_LTR 8828 0.0875 (134/1532) 0 * Os_TE_89305 Os_TE_89305 Chr8 14581678 14581677 + RIREX_LTR 8828 0.0888 (137/1543) 0 * Os_TE_89306 Os_TE_89148 Chr8 14505152 14508399 + ORSiTERTOOT00027 10853 0.0359 (105/2927) 1 Intact * Os_TE_89126 Chr8 14497610 14497809 - ORSgTEMT02000041 194 0.1924 (575/2988) 1 Intact * Os_TE_89124 Chr8 14497356 14496916 + RIREX_LTR 8828 0.0371 (111/2989) 1 Solo_LTR * Os_TE_89097 Chr8 14486560 14486559 + RIRE3A_LTR 10580 0.0361 (107/2967) 0 * * Os_TE_89084 Chr8 14482126 14482125 - STOWAWAY44_OS 240 0.0164 (49/2987) 0 * Os_TE_89083 Os_TE_89083 Chr8 14482123 14482124 + STOWAWAY44_OS 240 0.0157 (47/2986) 0 * Os_TE_89084 Os_TE_89073 Chr8 14472257 14475840 - ORSiTETNOOT00216 3569 0.1418 (348/2454) 1 Intact * Os_TE_89053 Chr8 14455826 14455825 - ORSgTETN00200001 10994 0.0591 (174/2942) 0 * * Os_TE_89051 Chr8 14454949 14454950 + COPIA2-LTR_OS 6433 0.0007 (2/2969) 0 * Os_TE_89050 Os_TE_89050 Chr8 14454945 14454944 - COPIA2-LTR_OS 6433 0.0007 (2/2971) 0 * Os_TE_89051 Os_TE_89025 Chr8 14430554 14430555 + RIREX_LTR 8828 0.1414 (420/2970) 0 * * Os_TE_89006 Chr8 14426682 14426683 - RIREX_LTR 8828 0.0003 (1/2928) 0 * * Os_TE_88977 Chr8 14412006 14412007 + GYPSY-A_LTR 8951 0.5130 (1521/2965) 0 * * Os_TE_88970 Chr8 14410424 14410423 + COPIA2-LTR_OS 6433 0.0180 (54/2994) 0 * * Os_TE_88946 Chr8 14399236 14399237 + ORSiTERTOOT00296 5553 0.0057 (17/2998) 0 * Os_TE_88945 Os_TE_88945 Chr8 14399232 14399231 - SC-3_LTR 5748 0.0057 (17/2998) 0 * Os_TE_88946 Os_TE_88943 Chr8 14397737 14397738 + OSTE22 2037 0.0020 (6/2978) 0 * * Os_TE_88938 Chr8 14397040 14397039 - MDM2 312 0.0210 (55/2623) 0 * * Os_TE_88917 Chr8 14392485 14392486 - SZ-25LTR 330 0.0017 (5/2980) 0 * * Os_TE_88888 Chr8 14371844 14371845 + DS-RICE4N 715 0.0637 (190/2984) 0 * Os_TE_88887 Os_TE_88887 Chr8 14371831 14371830 + ORSiTETN00100011 676 0.0018 (5/2819) 0 * Os_TE_88888 Os_TE_88882 Chr8 14369832 14369833 + ORSiTERTOOT00311 8241 0.1379 (410/2973) 0 * * Os_TE_88846 Chr8 14352149 14352150 - SC-3_LTR 5748 0.0261 (78/2992) 0 * * Os_TE_88823 Chr8 14343424 14343423 + ORSiTERTOOT00226 792 0.0003 (1/2912) 0 * * Os_TE_88810 Chr8 14337126 14336692 - MICROPON-LIKE-1 428 0.1913 (426/2227) 1 Intact * Os_TE_88807 Chr8 14336263 14336264 - RETROSAT2LTR 12796 0.5306 (1577/2972) 0 * * Os_TE_88806 Chr8 14332783 14332784 - SC-3_LTR 5748 0.0003 (1/2994) 0 * * Os_TE_88790 Chr8 14328145 14328146 + TWIF 586 0.0017 (5/2915) 0 * Os_TE_88789 Os_TE_88789 Chr8 14328138 14328137 - ORSiTETNOOT00134 607 0.0027 (8/2910) 0 * Os_TE_88790 Os_TE_88678 Chr8 14275018 14275017 + ENSPM6_OS 9815 0.0219 (65/2966) 0 * * Os_TE_88668 Chr8 14273078 14273079 + SPMLIKE 10989 0.0024 (7/2974) 0 * * Os_TE_88667 Chr8 14272947 14267172 + SPMLIKE 10989 0.1415 (422/2983) 1 Intact Os_TE_88658 Os_TE_88658 Chr8 14267172 14272947 - ORSgTETN00200001 10994 0.1361 (403/2962) 1 Intact Os_TE_88667 Os_TE_88638 Chr8 14264816 14264817 + ORSgTETNOOT01219 231 0.0670 (194/2896) 0 * * Os_TE_88630 Chr8 14264235 14264234 + OSTE33 1012 0.5904 (1600/2710) 0 * * Os_TE_88628 Chr8 14262074 14262075 - OSTONOR1_LTR 6440 0.6591 (1966/2983) 0 * Os_TE_88627 Os_TE_88627 Chr8 14262071 14262070 + OSTONOR1_LTR 6440 0.6516 (1938/2974) 0 * Os_TE_88628 Os_TE_88566 Chr8 14238804 14238803 + RIREX_LTR 8828 0.0026 (7/2664) 0 * * Os_TE_88563 Chr8 14238339 14238340 - SZ-22_LTR 4403 0.0004 (1/2644) 0 * Os_TE_88562 Os_TE_88562 Chr8 14238335 14238334 + ORSiTERTOOT00226 792 0.0004 (1/2669) 0 * Os_TE_88563 Os_TE_88545 Chr8 14233996 14233997 + ORSiCMCM00100019 2717 0.0013 (3/2294) 0 * * Os_TE_88496 Chr8 14213686 14213685 - NDNA1TNA_OS 334 0.0027 (7/2576) 0 * * Os_TE_88494 Chr8 14213656 14213657 - TRUNCATOR 2918 0.0746 (192/2575) 0 * Os_TE_88493 Os_TE_88493 Chr8 14213649 14213648 - CLOUD-4 520 0.0038 (2/525) 0 * Os_TE_88494 Os_TE_88490 Chr8 14209539 14209540 + TRUNCATOR 2918 0.0784 (203/2588) 0 * * Os_TE_88488 Chr8 14208191 14208192 - RIREX_LTR 8828 0.0249 (65/2613) 0 * Os_TE_88487 Os_TE_88487 Chr8 14208187 14208186 + RIREX_LTR 8828 0.0249 (65/2613) 0 * Os_TE_88488 Os_TE_88485 Chr8 14207884 14207885 + RIREX_LTR 8828 0.0281 (70/2495) 0 * * Os_TE_88483 Chr8 14207473 14207474 - ENSPM4_OS 11610 0.7106 (1729/2433) 0 * * Os_TE_88475 Chr8 14206048 14206049 - MuDR4_OS 7610 0.0036 (8/2248) 0 * Os_TE_88474 Os_TE_88474 Chr8 14206041 14206040 - MuDR4_OS 7610 0.0027 (6/2242) 0 * Os_TE_88475 Os_TE_88467 Chr8 14205261 14205262 + RIRE2_LTR 11306 0.0035 (8/2273) 0 * Os_TE_88466 Os_TE_88466 Chr8 14205257 14205256 - RIRE2_LTR 11306 0.0031 (7/2270) 0 * Os_TE_88467 Os_TE_88430 Chr8 14196309 14196310 + RETROSAT2LTR 12796 0.6224 (1843/2961) 0 * Os_TE_88429 Os_TE_88429 Chr8 14196308 14196307 - RETROSAT2LTR 12796 0.2339 (357/1526) 0 * Os_TE_88430 Os_TE_88427 Chr8 14195930 14195929 + RIREX_LTR 8828 0.0003 (1/2990) 0 * * Os_TE_88424 Chr8 14194622 14194623 - SC-3_LTR 5748 0.0010 (3/2995) 0 * Os_TE_88423 Os_TE_88423 Chr8 14194618 14194617 + ORSiTERTOOT00296 5553 0.0010 (3/2994) 0 * Os_TE_88424 Os_TE_88420 Chr8 14193383 14193382 - SC-3_LTR 5748 0.0010 (3/2967) 0 * * Os_TE_88417 Chr8 14193041 14193040 + STOWAWAY1_OS 149 0.0003 (1/2969) 0 * * Os_TE_88415 Chr8 14191943 14191944 + SC-8_LTR 4951 0.0003 (1/2982) 0 * * Os_TE_88413 Chr8 14191070 14191069 - ORSgTEMT00101209 342 0.0007 (2/2976) 0 * * Os_TE_88373 Chr8 14179135 14179136 - RIREX_LTR 8828 0.0007 (2/2895) 0 * Os_TE_88372 Os_TE_88372 Chr8 14179131 14179130 + RIREX_LTR 8828 0.0007 (2/2901) 0 * Os_TE_88373 Os_TE_88366 Chr8 14172076 14172077 - SC-3_LTR 5748 0.0003 (1/2980) 0 * Os_TE_88365 Os_TE_88365 Chr8 14172072 14172071 + ORSiTERTOOT00296 5553 0.0003 (1/2985) 0 * Os_TE_88366 Os_TE_88363 Chr8 14169754 14169755 + SC-8_LTR 4951 0.0003 (1/2979) 0 * Os_TE_88362 Os_TE_88362 Chr8 14169750 14169749 - SC-8_LTR 4951 0.0003 (1/2982) 0 * Os_TE_88363 Os_TE_88357 Chr8 14164221 14164222 - RETRO2_LTR 12874 0.5634 (1683/2987) 0 * Os_TE_88356 Os_TE_88356 Chr8 14164217 14164216 + RETRO2_LTR 12874 0.5640 (1687/2991) 0 * Os_TE_88357 Os_TE_88352 Chr8 14162951 14162952 + RETRO2A_LTR 12895 0.0338 (101/2990) 0 * Os_TE_88351 Os_TE_88351 Chr8 14162947 14162946 - RETRO1_LTR 8314 0.0332 (99/2986) 0 * Os_TE_88352 Os_TE_88350 Chr8 14158969 14158970 - ORSiTETNOOT00216 3569 0.0020 (6/2928) 0 * Os_TE_88349 Os_TE_88349 Chr8 14158962 14158961 + TWIFBIG 3567 0.0014 (4/2910) 0 * Os_TE_88350 Os_TE_88303 Chr8 14131797 14128373 - TRUNCATOR2_LTR 2904 0.8649 (2581/2984) 1 Intact Os_TE_88299 Os_TE_88299 Chr8 14128373 14131797 + ORSiCMCM00100019 2717 0.8637 (2559/2963) 1 Intact Os_TE_88303 Os_TE_88296 Chr8 14127968 14127969 - STOWAWAY51_OS 246 0.0003 (1/2994) 0 * * Os_TE_88295 Chr8 14126847 14126630 - ORSgTEMT02400246 177 0.1439 (429/2981) 1 Intact Os_TE_88294 Os_TE_88294 Chr8 14126626 14126844 - TYPEM 227 0.1440 (432/2999) 1 Intact Os_TE_88295 Os_TE_88288 Chr8 14124390 14124391 - TRUNCATOR2_LTR 2904 0.0024 (7/2967) 0 * Os_TE_88287 Os_TE_88287 Chr8 14124386 14124385 + TRUNCATOR2_LTR 2904 0.0027 (8/2970) 0 * Os_TE_88288 Os_TE_88261 Chr8 14118790 14118791 + ORSiTERTOOT00291 11421 0.0003 (1/2920) 0 * * Os_TE_88259 Chr8 14118457 14118458 - RETRO1_LTR 8314 0.0007 (2/2941) 0 * Os_TE_88258 Os_TE_88258 Chr8 14118453 14118452 + RETRO2A_LTR 12895 0.0007 (2/2936) 0 * Os_TE_88259 Os_TE_88192 Chr8 14096293 14086472 - ENSPM5_OS 9581 0.1419 (405/2854) 1 Intact * Os_TE_88183 Chr8 14082645 14082646 - CRM-LTR_OS 7749 0.0007 (2/2890) 0 * Os_TE_88182 Os_TE_88182 Chr8 14082641 14082640 + CRM-LTR_OS 7749 0.0007 (2/2876) 0 * Os_TE_88183 Os_TE_88179 Chr8 14082416 14082415 + TWIFBIG 3567 0.0425 (112/2636) 0 * * Os_TE_88170 Chr8 14079358 14079357 - MUDRN1_OS 764 0.0044 (13/2965) 0 * * Os_TE_88152 Chr8 14063814 14076646 - RETRO1_LTR 8314 0.1446 (428/2959) 1 Intact * Os_TE_88145 Chr8 14061936 14061935 + ORSgTETNOOT00908 242 0.0020 (6/2996) 0 * * Os_TE_88141 Chr8 14058258 14058259 + ORSiTERTOOT00226 792 0.0003 (1/2989) 0 * * Os_TE_88139 Chr8 14055742 14055743 + ORSgTEMT00600124 361 0.0003 (1/2985) 0 * Os_TE_88138 Os_TE_88138 Chr8 14055740 14055739 + CASTAWAY 364 0.0003 (1/2983) 0 * Os_TE_88139 Os_TE_88118 Chr8 14053030 14053031 + RETRO2A_LTR 12895 0.0003 (1/2959) 0 * Os_TE_88117 Os_TE_88117 Chr8 14053026 14053025 - RETRO2_LTR 12874 0.0003 (1/2963) 0 * Os_TE_88118 Os_TE_88108 Chr8 14047526 14047527 - ORSiTERT00200154 9386 0.0216 (63/2921) 0 * Os_TE_88107 Os_TE_88107 Chr8 14047520 14047519 + TRUNCATOR 2918 0.0266 (78/2935) 0 * Os_TE_88108 Os_TE_88027 Chr8 14021847 14021848 - RIREX_LTR 8828 0.0018 (5/2777) 0 * Os_TE_88026 Os_TE_88026 Chr8 14021843 14021842 + RIREX_LTR 8828 0.0017 (5/2886) 0 * Os_TE_88027 Os_TE_88025 Chr8 14021255 14021256 + ORSgTEMT00600272 361 0.0277 (77/2776) 0 * Os_TE_88024 Os_TE_88024 Chr8 14021253 14021252 - ORSgTEMT00600524 364 0.0284 (79/2782) 0 * Os_TE_88025 Os_TE_87986 Chr8 14007175 14007176 - ENSPM5_OS 9581 0.0526 (142/2702) 0 * Os_TE_87985 Os_TE_87985 Chr8 14007173 14007172 + ENSPM6_OS 9815 0.0446 (120/2691) 0 * Os_TE_87986 Os_TE_87975 Chr8 14002340 14002341 - RETROSAT2LTR 12796 0.0572 (143/2502) 0 * * Os_TE_87947 Chr8 13992335 13992336 - CRM-LTR_OS 7749 0.0003 (1/2990) 0 * Os_TE_87946 Os_TE_87946 Chr8 13992331 13992330 + CRM-LTR_OS 7749 0.0003 (1/2993) 0 * Os_TE_87947 Os_TE_87944 Chr8 13989658 13989659 - SZ-22_LTR 4403 0.0007 (1/1360) 0 * * Os_TE_87935 Chr8 13984929 13984596 - NDNA1TNA_OS 334 0.1418 (421/2968) 1 Intact Os_TE_87933 Os_TE_87933 Chr8 13984596 13984929 + NDNA1TNA_OS 334 0.1421 (423/2977) 1 Intact Os_TE_87935 Os_TE_87914 Chr8 13976638 13976639 + SZ-67LTR 1540 0.0018 (5/2783) 0 * Os_TE_87913 Os_TE_87913 Chr8 13976634 13976633 - RETROSAT5_LTR 13878 0.0017 (5/2978) 0 * Os_TE_87914 Os_TE_87905 Chr8 13975095 13975096 + ORSiTERTOOT00226 792 0.0014 (4/2903) 0 * * Os_TE_87899 Chr8 13974684 13974683 + SPMLIKE 10989 0.1352 (366/2707) 0 * * Os_TE_87897 Chr8 13972899 13972900 + OSMUD1 5028 0.0057 (17/2995) 0 * Os_TE_87896 Os_TE_87896 Chr8 13972891 13972890 - OSMUD1 5028 0.0053 (16/2995) 0 * Os_TE_87897 Os_TE_87875 Chr8 13961774 13961775 + COPIA1-LTR_OS 9292 0.0004 (1/2833) 0 * * Os_TE_87857 Chr8 13954663 13954662 - RIRE3_LTR 12054 0.0011 (3/2647) 0 * * Os_TE_87855 Chr8 13954135 13954136 + COPIA2-LTR_OS 6433 0.6159 (1626/2640) 0 * Os_TE_87854 Os_TE_87854 Chr8 13954131 13954130 - COPIA2-LTR_OS 6433 0.6535 (1875/2869) 0 * Os_TE_87855 Os_TE_87849 Chr8 13953174 13953175 + ORSiTERTOOT00226 792 0.0004 (1/2711) 0 * * Os_TE_87846 Chr8 13952513 13951999 + DS-RICE3N 525 0.1408 (421/2989) 1 Intact * Os_TE_87833 Chr8 13946012 13946253 + ORSgTETNOOT00908 242 0.8642 (2570/2974) 1 Intact * Os_TE_87812 Chr8 13937168 13937169 + ORSgTETNOOT00908 242 0.0705 (211/2994) 0 * Os_TE_87811 Os_TE_87811 Chr8 13937166 13937165 + ORSgTETNOOT02019 240 0.0699 (209/2992) 0 * Os_TE_87812 Os_TE_87768 Chr8 13915962 13915963 + ORSiTERTOOT00296 5553 0.0003 (1/2963) 0 * Os_TE_87767 Os_TE_87767 Chr8 13915958 13915957 - SC-3_LTR 5748 0.0003 (1/2965) 0 * Os_TE_87768 Os_TE_87765 Chr8 13915412 13914577 + MUDRN1_OS 764 0.1408 (417/2962) 1 Intact * Os_TE_87760 Chr8 13912715 13912714 - RETROSAT2LTR 12796 0.6308 (1881/2982) 0 * Os_TE_87759 Os_TE_87759 Chr8 13912712 13912713 - TRUNCATOR 2918 0.6215 (1811/2914) 0 * Os_TE_87760 Os_TE_87625 Chr8 13848271 13848270 - MuDR3_OS 8604 0.1334 (394/2954) 0 * * Os_TE_87624 Chr8 13848116 13848115 - RIRE2_LTR 11306 0.0007 (2/2957) 0 * * Os_TE_87533 Chr8 13814179 13814180 + ORSiTERTOOT00226 792 0.0003 (1/2988) 0 * * Os_TE_87521 Chr8 13811774 13811773 + TRUNCATOR 2918 0.0339 (101/2983) 0 * * Os_TE_87500 Chr8 13808595 13785415 - TRUNCATOR 2918 0.1384 (412/2977) 1 Intact * Os_TE_87486 Chr8 13784881 13784882 - SZ-22_LTR 4403 0.0003 (1/2989) 0 * Os_TE_87485 Os_TE_87485 Chr8 13784877 13784876 + ORSiTERTOOT00226 792 0.0003 (1/2987) 0 * Os_TE_87486 Os_TE_87483 Chr8 13783968 13783967 - RETROSAT3_LTR 11537 0.0748 (224/2993) 0 * * Os_TE_87433 Chr8 13765790 13765791 - ORSiTETNOOT00147 3619 0.0055 (16/2929) 0 * * Os_TE_87430 Chr8 13759273 13759274 + ORSiTERTOOT00296 5553 0.0010 (3/2941) 0 * Os_TE_87429 Os_TE_87429 Chr8 13759269 13759268 - SC-3_LTR 5748 0.0010 (3/2936) 0 * Os_TE_87430 Os_TE_87426 Chr8 13758044 13758045 + SC-8_LTR 4951 0.0007 (2/2987) 0 * Os_TE_87425 Os_TE_87425 Chr8 13758040 13758039 - SC-8_LTR 4951 0.0007 (2/2988) 0 * Os_TE_87426 Os_TE_87404 Chr8 13749530 13749531 + SC-8_LTR 4951 0.0007 (2/2986) 0 * * Os_TE_87388 Chr8 13748117 13748116 + SC-8_LTR 4951 0.0003 (1/2995) 0 * * Os_TE_87387 Chr8 13748093 13748094 - SC-3_LTR 5748 0.0003 (1/2995) 0 * * Os_TE_87364 Chr8 13738496 13738497 - SZ-22_LTR 4403 0.0003 (1/2982) 0 * Os_TE_87363 Os_TE_87363 Chr8 13738492 13738491 + ORSiTERTOOT00226 792 0.0003 (1/2983) 0 * Os_TE_87364 Os_TE_87337 Chr8 13731646 13731645 - CRM-LTR_OS 7749 0.0003 (1/2902) 0 * * Os_TE_87336 Chr8 13731360 13731361 - SZ-22_LTR 4403 0.0024 (7/2898) 0 * * Os_TE_87333 Chr8 13730927 13730926 + ORSiTERTOOT00226 792 0.0003 (1/2936) 0 * * Os_TE_87332 Chr8 13730833 13730834 - TRUNCATOR2_LTR 2904 0.5382 (1558/2895) 0 * * Os_TE_87311 Chr8 13728588 13716523 - RIRE3_LTR 12054 0.1439 (430/2989) 1 Intact * Os_TE_87196 Chr8 13700085 13700084 + ORSiTERTOOT00226 792 0.0003 (1/2932) 0 * * Os_TE_87178 Chr8 13696317 13696318 + ORSiTERTOOT00226 792 0.0003 (1/2986) 0 * * Os_TE_87174 Chr8 13696148 13696147 + CRM-LTR_OS 7749 0.0020 (6/2983) 0 * * Os_TE_87092 Chr8 13678615 13678614 + ORSiTERTOOT00226 792 0.0003 (1/2997) 0 * * Os_TE_87021 Chr8 13648901 13648902 - SZ-22_LTR 4403 0.0004 (1/2584) 0 * Os_TE_87020 Os_TE_87020 Chr8 13648897 13648896 + ORSiTERTOOT00226 792 0.0004 (1/2584) 0 * Os_TE_87021 Os_TE_87019 Chr8 13648827 13648828 - RIRE3_LTR 12054 0.6044 (1572/2601) 0 * Os_TE_87018 Os_TE_87018 Chr8 13648823 13648822 + RIRE3_LTR 12054 0.5942 (1533/2580) 0 * Os_TE_87019 Os_TE_87016 Chr8 13647818 13647819 - TRUNCATOR2_LTR 2904 0.0521 (135/2590) 0 * Os_TE_87015 Os_TE_87015 Chr8 13647814 13647813 + TRUNCATOR2_LTR 2904 0.0529 (137/2591) 0 * Os_TE_87016 Os_TE_87014 Chr8 13647697 13647698 - SZ-22_LTR 4403 0.0004 (1/2593) 0 * Os_TE_87013 Os_TE_87013 Chr8 13647693 13647692 + ORSiTERTOOT00034 791 0.0004 (1/2594) 0 * Os_TE_87014 Os_TE_86970 Chr8 13634680 13634681 + MUJITOS1 3987 0.0025 (7/2763) 0 * Os_TE_86969 Os_TE_86969 Chr8 13634674 13634673 + MUJITOS1 3987 0.0022 (6/2773) 0 * Os_TE_86970 Os_TE_86968 Chr8 13634221 13634222 + ORSiTERTOOT00226 792 0.0004 (1/2792) 0 * Os_TE_86967 Os_TE_86967 Chr8 13634217 13634216 - SZ-22_LTR 4403 0.0004 (1/2795) 0 * Os_TE_86968 Os_TE_86966 Chr8 13633471 13633472 + CRM-LTR_OS 7749 0.0022 (6/2786) 0 * Os_TE_86965 Os_TE_86965 Chr8 13633467 13633466 - CRM-LTR_OS 7749 0.0022 (6/2787) 0 * Os_TE_86966 Os_TE_86964 Chr8 13633210 13633209 - ORSgTERT00201441 428 0.0011 (3/2792) 0 * * Os_TE_86950 Chr8 13630737 13630738 + ORSiCMCM00100019 2717 0.6718 (1830/2724) 0 * * Os_TE_86940 Chr8 13629052 13629053 + ORSiTERTOOT00226 792 0.0007 (2/2783) 0 * * Os_TE_86910 Chr8 13621964 13621963 + ORSiTERTOOT00226 792 0.0004 (1/2784) 0 * * Os_TE_86908 Chr8 13621844 13621845 + ORSiTERTOOT00226 792 0.0291 (81/2783) 0 * Os_TE_86907 Os_TE_86907 Chr8 13621840 13621839 + ORSiTERTOOT00226 792 0.0305 (85/2784) 0 * Os_TE_86908 Os_TE_86906 Chr8 13621533 13621534 + ORSiTERTOOT00226 792 0.0004 (1/2782) 0 * * Os_TE_86904 Chr8 13621192 13621191 + COPIA2-LTR_OS 6433 0.0083 (23/2777) 0 * * Os_TE_86903 Chr8 13620983 13620984 - MuDR3_OS 8604 0.1429 (393/2751) 0 * Os_TE_86902 Os_TE_86902 Chr8 13620974 13620973 - MuDR3_OS 8604 0.1388 (381/2745) 0 * Os_TE_86903 Os_TE_86901 Chr8 13620882 13620883 - RIRE7_LTR 7615 0.0025 (6/2359) 0 * Os_TE_86900 Os_TE_86900 Chr8 13620878 13620877 + RIRE7_LTR 7615 0.0022 (6/2764) 0 * Os_TE_86901 Os_TE_86897 Chr8 13620688 13620687 - SZ-22_LTR 4403 0.0004 (1/2765) 0 * * Os_TE_86896 Chr8 13620647 13620648 - RIRE2_LTR 11306 0.0007 (2/2766) 0 * * Os_TE_86894 Chr8 13620486 13620487 - SZ-22_LTR 4403 0.0007 (2/2772) 0 * * Os_TE_86892 Chr8 13619245 13619246 + ORSiTERTOOT00226 792 0.0004 (1/2741) 0 * Os_TE_86891 Os_TE_86891 Chr8 13619241 13619240 - SZ-22_LTR 4403 0.0004 (1/2740) 0 * Os_TE_86892 Os_TE_86890 Chr8 13619086 13619087 - SZ-22_LTR 4403 0.0385 (105/2728) 0 * Os_TE_86889 Os_TE_86889 Chr8 13619082 13619081 + ORSiTERTOOT00034 791 0.0384 (105/2734) 0 * Os_TE_86890 Os_TE_86888 Chr8 13618995 13618996 - STOWAWAY43_OS 233 0.0004 (1/2731) 0 * * Os_TE_86886 Chr8 13618511 13618512 + ORSiTERTOOT00226 792 0.0004 (1/2727) 0 * * Os_TE_86754 Chr8 13565606 13565605 + ORSiTERTOOT00226 792 0.0003 (1/2962) 0 * * Os_TE_86683 Chr8 13546177 13546178 - SZ-22_LTR 4403 0.0007 (1/1501) 0 * * Os_TE_86543 Chr8 13510900 13510899 - SZ-22_LTR 4403 0.3465 (449/1296) 0 * * Os_TE_86511 Chr8 13499039 13499040 + ORSiTERTOOT00034 791 0.0010 (3/2873) 0 * * Os_TE_86477 Chr8 13488675 13488676 + ORSiTERTOOT00226 792 0.0003 (1/2980) 0 * * Os_TE_86476 Chr8 13488361 13488362 - SZ-22_LTR 4403 0.0003 (1/2863) 0 * Os_TE_86475 Os_TE_86475 Chr8 13488357 13488356 + ORSiTERTOOT00226 792 0.0003 (1/2977) 0 * Os_TE_86476 Os_TE_86459 Chr8 13486001 13486002 - SZ-22_LTR 4403 0.0003 (1/2942) 0 * * Os_TE_86411 Chr8 13458695 13458696 - SZ-22_LTR 4403 0.0003 (1/2974) 0 * * Os_TE_86294 Chr8 13410580 13410581 - SZ-22_LTR 4403 0.0009 (1/1123) 0 * * Os_TE_86264 Chr8 13395114 13395115 + ORSiTERTOOT00381 4988 0.0010 (3/2970) 0 * Os_TE_86263 Os_TE_86263 Chr8 13395110 13395109 - SC-8_LTR 4951 0.0010 (3/2969) 0 * Os_TE_86264 Os_TE_86177 Chr8 13369113 13369114 - TRUNCATOR2_LTR 2904 0.0344 (101/2940) 0 * * Os_TE_86175 Chr8 13368882 13368881 + ORSiTERTOOT00226 792 0.0010 (3/2948) 0 * * Os_TE_86167 Chr8 13364981 13364982 - SC-3_LTR 5748 0.0003 (1/2973) 0 * Os_TE_86166 Os_TE_86166 Chr8 13364977 13364976 + ORSiTERTOOT00296 5553 0.0003 (1/2973) 0 * Os_TE_86167 Os_TE_86165 Chr8 13364847 13364848 - SZ-22_LTR 4403 0.0003 (1/2967) 0 * Os_TE_86164 Os_TE_86164 Chr8 13364843 13364842 + ORSiTERTOOT00226 792 0.0003 (1/2968) 0 * Os_TE_86165 Os_TE_86155 Chr8 13358982 13358983 - ORSiTETNOOT00134 607 0.0004 (1/2753) 0 * * Os_TE_86140 Chr8 13354674 13354675 + ORSiTERTOOT00097 759 0.0004 (1/2523) 0 * * Os_TE_85965 Chr8 13122591 13122592 + ORSiTERTOOT00226 792 0.0012 (3/2600) 0 * Os_TE_85964 Os_TE_85964 Chr8 13122587 13122586 - SZ-22_LTR 4403 0.0012 (3/2602) 0 * Os_TE_85965 Os_TE_85939 Chr8 13116501 13116502 - CRM-LTR_OS 7749 0.0017 (4/2295) 0 * Os_TE_85938 Os_TE_85938 Chr8 13116497 13116496 + CRM-LTR_OS 7749 0.0013 (3/2320) 0 * Os_TE_85939 Os_TE_85923 Chr8 13109278 13109279 + ORSiTERTOOT00097 759 0.0004 (1/2391) 0 * Os_TE_85922 Os_TE_85922 Chr8 13109274 13109273 - SZ-22_LTR 4403 0.0004 (1/2391) 0 * Os_TE_85923 Os_TE_85887 Chr8 13103614 13103615 + CRM-LTR_OS 7749 0.7281 (1893/2600) 0 * * Os_TE_85818 Chr8 13078004 13078005 - SZ-22_LTR 4403 0.0007 (2/2983) 0 * Os_TE_85817 Os_TE_85817 Chr8 13078000 13077999 + ORSiTERTOOT00226 792 0.0007 (2/2980) 0 * Os_TE_85818 Os_TE_85794 Chr8 13070552 13070551 - SZ-38 8643 0.0010 (3/2957) 0 * * Os_TE_85695 Chr8 13041519 13041518 + ORSiTERTOOT00226 792 0.0003 (1/2990) 0 * * Os_TE_85677 Chr8 13034536 13034535 + CRM-LTR_OS 7749 0.0003 (1/2990) 0 * * Os_TE_85676 Chr8 13034356 13034357 - ORSgTEMT02000047 197 0.1333 (387/2903) 0 * * Os_TE_85675 Chr8 13032447 13032448 + RETRO2_LTR 12874 0.0007 (2/2994) 0 * Os_TE_85674 Os_TE_85674 Chr8 13032443 13032442 - RETRO2_LTR 12874 0.0007 (2/2992) 0 * Os_TE_85675 Os_TE_85659 Chr8 13027299 13027300 - SZ-22_LTR 4403 0.0004 (1/2796) 0 * * Os_TE_85645 Chr8 13023983 13023984 - RETROSAT3_LTR 11537 0.5206 (1555/2987) 0 * Os_TE_85644 Os_TE_85644 Chr8 13023979 13023978 + RETROSAT2LTRA 3112 0.5161 (1537/2978) 0 * Os_TE_85645 Os_TE_85634 Chr8 13021466 13021467 + ORSiTERTOOT00226 792 0.0003 (1/2991) 0 * Os_TE_85633 Os_TE_85633 Chr8 13021462 13021461 - SZ-22_LTR 4403 0.0003 (1/2994) 0 * Os_TE_85634 Os_TE_85629 Chr8 13019698 13019697 + RETROSAT3_LTR 11537 0.0010 (3/2958) 0 * * Os_TE_85591 Chr8 12997733 12997734 - SZ-22_LTR 4403 0.0003 (1/2999) 0 * Os_TE_85590 Os_TE_85590 Chr8 12997728 12997727 + ORSiTERTOOT00226 792 0.0003 (1/2998) 0 * Os_TE_85591 Os_TE_85337 Chr8 12906777 12906778 - ORSgTEMT02400246 177 0.0419 (119/2837) 0 * * Os_TE_85327 Chr8 12903589 12903590 + ORSiTERTOOT00226 792 0.0335 (100/2988) 0 * * Os_TE_85269 Chr8 12895837 12895838 - TRUNCATOR 2918 0.0447 (132/2950) 0 * * Os_TE_85263 Chr8 12894226 12894225 + ORSiTERTOOT00226 792 0.0003 (1/2994) 0 * * Os_TE_85240 Chr8 12886270 12886269 - SZ-22_LTR 4403 0.0013 (4/2964) 0 * * Os_TE_85212 Chr8 12868636 12868635 + ORSgTEMT00100949 340 0.7240 (2154/2975) 0 * Os_TE_85211 Os_TE_85211 Chr8 12868632 12868633 + ORSgTEMT00100272 356 0.7272 (2162/2973) 0 * Os_TE_85212 Os_TE_85192 Chr8 12865944 12865945 - SC-3_LTR 5748 0.0003 (1/2980) 0 * Os_TE_85191 Os_TE_85191 Chr8 12865940 12865939 + ORSiTERTOOT00296 5553 0.0003 (1/2983) 0 * Os_TE_85192 Os_TE_85185 Chr8 12857725 12857726 + COPIA2-LTR_OS 6433 0.0007 (2/2994) 0 * Os_TE_85184 Os_TE_85184 Chr8 12857721 12857720 - COPIA2-LTR_OS 6433 0.0007 (2/2991) 0 * Os_TE_85185 Os_TE_85183 Chr8 12856293 12856294 + CLOUD-4 520 0.7000 (2081/2973) 0 * * Os_TE_85022 Chr8 12787061 12787062 + RIRE3_LTR 12054 0.0013 (4/2973) 0 * Os_TE_85021 Os_TE_85021 Chr8 12787057 12787056 - RIRE3_LTR 12054 0.0017 (5/2972) 0 * Os_TE_85022 Os_TE_84960 Chr8 12768778 12768777 + TRUNCATOR 2918 0.0004 (1/2596) 0 * Os_TE_84959 Os_TE_84959 Chr8 12768777 12768778 - TRUNCATOR 2918 0.0004 (1/2603) 0 * Os_TE_84960 Os_TE_84958 Chr8 12768339 12768340 + CRM-LTR_OS 7749 0.0004 (1/2594) 0 * Os_TE_84957 Os_TE_84957 Chr8 12768335 12768334 - CRM-LTR_OS 7749 0.0004 (1/2592) 0 * Os_TE_84958 Os_TE_84830 Chr8 12711691 12711692 - SZ-22_LTR 4403 0.0007 (2/2983) 0 * Os_TE_84829 Os_TE_84829 Chr8 12711687 12711686 + ORSiTERTOOT00226 792 0.0007 (2/2981) 0 * Os_TE_84830 Os_TE_84828 Chr8 12711157 12711158 + ORSiTERTOOT00226 792 0.0003 (1/2979) 0 * Os_TE_84827 Os_TE_84827 Chr8 12711153 12711152 - SZ-22_LTR 4403 0.0003 (1/2984) 0 * Os_TE_84828 Os_TE_84777 Chr8 12695051 12695052 - TRUNCATOR2_LTR 2904 0.0037 (5/1352) 0 * * Os_TE_84775 Chr8 12695003 12695002 - ORSiTERT00200154 9386 0.0304 (40/1317) 0 * * Os_TE_84768 Chr8 12693807 12690799 + TRUNCATOR 2918 0.1719 (436/2537) 1 Intact Os_TE_84762 Os_TE_84762 Chr8 12690794 12693807 - TRUNCATOR 2918 0.3045 (433/1422) 1 Intact Os_TE_84768 Os_TE_84761 Chr8 12690257 12690258 + SZ-22_LTR 4403 0.0007 (1/1422) 0 * * Os_TE_84760 Chr8 12690227 12690228 - SZ-22_LTR 4403 0.0007 (1/1432) 0 * Os_TE_84759 Os_TE_84759 Chr8 12690223 12690222 + ORSiTERTOOT00226 792 0.0007 (1/1430) 0 * Os_TE_84760 Os_TE_84758 Chr8 12689761 12689760 + ORSiTERTOOT00034 791 0.0007 (1/1419) 0 * * Os_TE_84757 Chr8 12689544 12689545 + ORSiTERTOOT00226 792 0.0028 (4/1412) 0 * * Os_TE_84754 Chr8 12688939 12688940 + SZ-22_LTR 4403 0.0008 (2/2454) 0 * * Os_TE_84735 Chr8 12687183 12687184 - ORSgTERT00200063 5773 0.0813 (109/1340) 0 * * Os_TE_84731 Chr8 12686685 12686684 + ORSiTERTOOT00226 792 0.0006 (1/1590) 0 * * Os_TE_84729 Chr8 12686454 12686453 + ORSiTERTOOT00226 792 0.0028 (4/1427) 0 * * Os_TE_84713 Chr8 12682140 12682141 + ORSiTERTOOT00226 792 0.0007 (1/1343) 0 * Os_TE_84712 Os_TE_84712 Chr8 12682136 12682135 - SZ-22_LTR 4403 0.0007 (1/1350) 0 * Os_TE_84713 Os_TE_84711 Chr8 12682056 12682057 - SZ-22_LTR 4403 0.0015 (2/1307) 0 * * Os_TE_84708 Chr8 12681247 12681248 - TRUNCATOR 2918 0.4253 (350/823) 0 * * Os_TE_84702 Chr8 12680787 12680786 + ORSiTERTOOT00034 791 0.0012 (1/866) 0 * * Os_TE_84683 Chr8 12663450 12663449 - SZ-22_LTR 4403 0.0010 (1/984) 0 * * Os_TE_84682 Chr8 12661666 12661667 + ORSiTERTOOT00226 792 0.0037 (5/1340) 0 * * Os_TE_84680 Chr8 12661529 12661530 + ORSiTERTOOT00226 792 0.0010 (1/989) 0 * Os_TE_84679 Os_TE_84679 Chr8 12661525 12661524 - SZ-22_LTR 4403 0.0010 (1/987) 0 * Os_TE_84680 Os_TE_84657 Chr8 12644667 12644666 + RIRE7_LTR 7615 0.0023 (6/2644) 0 * * Os_TE_84655 Chr8 12644492 12644493 + ORSiTERTOOT00226 792 0.0004 (1/2616) 0 * * Os_TE_84650 Chr8 12643974 12643973 + ORSiTERTOOT00226 792 0.0004 (1/2651) 0 * * Os_TE_84648 Chr8 12643432 12643433 + ORSiTERTOOT00034 791 0.0004 (1/2640) 0 * * Os_TE_84628 Chr8 12635815 12635814 - STOWAWAY51_OS 246 0.0355 (90/2536) 0 * Os_TE_84627 Os_TE_84627 Chr8 12635812 12635813 - STOWAWAY44_OS 240 0.0412 (104/2527) 0 * Os_TE_84628 Os_TE_84624 Chr8 12635442 12635441 - SZ-22_LTR 4403 0.0004 (1/2547) 0 * * Os_TE_84507 Chr8 12604896 12604895 + SZ-22_LTR 4403 0.0006 (1/1714) 0 * * Os_TE_84254 Chr8 12460975 12464472 + GYPSY-A_LTR 8951 0.2361 (332/1406) 1 Solo_LTR * Os_TE_84166 Chr8 12431112 12431113 + TWIF 586 0.3176 (594/1870) 0 * Os_TE_84165 Os_TE_84165 Chr8 12431106 12431105 - ORSiTETNOOT00156 3648 0.5463 (1462/2676) 0 * Os_TE_84166 Os_TE_84162 Chr8 12430129 12430130 + ORSiTERTOOT00097 759 0.0031 (8/2582) 0 * * Os_TE_84131 Chr8 12420007 12420008 - TYPEM 227 0.0007 (2/2956) 0 * Os_TE_84130 Os_TE_84130 Chr8 12420006 12420005 - ORSgTEMT02400179 221 0.0007 (2/2959) 0 * Os_TE_84131 Os_TE_84124 Chr8 12415309 12415310 - SC-3_LTR 5748 0.0497 (139/2796) 0 * Os_TE_84123 Os_TE_84123 Chr8 12415305 12415304 - SC-3_LTR 5748 0.0490 (137/2795) 0 * Os_TE_84124 Os_TE_84122 Chr8 12414553 12414552 - SC-3_LTR 5748 0.0341 (102/2988) 0 * * Os_TE_84102 Chr8 12400694 12400695 + OSTE20 496 0.0291 (75/2573) 0 * Os_TE_84101 Os_TE_84101 Chr8 12400690 12400689 - OSTE20 496 0.0295 (76/2574) 0 * Os_TE_84102 Os_TE_84079 Chr8 12391876 12391877 + ORSgTEMT01601122 212 0.0014 (4/2855) 0 * * Os_TE_84052 Chr8 12385218 12385219 + ORSiTERTOOT00296 5553 0.0003 (1/2990) 0 * * Os_TE_84000 Chr8 12369805 12366245 - ORSiTETNOOT00200 3563 0.1389 (415/2987) 1 Intact Os_TE_83999 Os_TE_83999 Chr8 12366245 12369803 + TWIF 586 0.1372 (409/2982) 1 Intact Os_TE_84000 Os_TE_83997 Chr8 12366130 12366129 - ORSiTETNOOT00200 3563 0.0678 (201/2963) 0 * * Os_TE_83989 Chr8 12363667 12363668 + CACTA-I 1124 0.1366 (409/2994) 0 * Os_TE_83988 Os_TE_83988 Chr8 12363665 12363664 - CACTA-H 1152 0.1396 (418/2994) 0 * Os_TE_83989 Os_TE_83987 Chr8 12363395 12363394 - TYPEM 227 0.0234 (70/2987) 0 * Os_TE_83986 Os_TE_83986 Chr8 12363394 12363395 + ORSgTEMT02400245 225 0.0235 (70/2983) 0 * Os_TE_83987 Os_TE_83978 Chr8 12362091 12362090 - AMYLTP 383 0.1432 (409/2856) 0 * * Os_TE_83968 Chr8 12359613 12359612 + ORSiTERTOOT00034 791 0.1003 (300/2990) 0 * * Os_TE_83916 Chr8 12342446 12342445 - TRUNCATOR2_LTR 2904 0.0003 (1/2953) 0 * * Os_TE_83904 Chr8 12337301 12337300 + ORSiTERTOOT00296 5553 0.0003 (1/2982) 0 * * Os_TE_83887 Chr8 12330873 12330874 + ORSgTETNOOT01275 140 0.0506 (151/2987) 0 * * Os_TE_83884 Chr8 12328878 12328879 + COPIA2-LTR_OS 6433 0.0010 (3/2972) 0 * Os_TE_83883 Os_TE_83883 Chr8 12328874 12328873 - COPIA2-LTR_OS 6433 0.0013 (4/2976) 0 * Os_TE_83884 Os_TE_83882 Chr8 12328495 12328496 - RIREX_LTR 8828 0.0020 (6/2993) 0 * Os_TE_83881 Os_TE_83881 Chr8 12328491 12328490 + RIREX_LTR 8828 0.0020 (6/2987) 0 * Os_TE_83882 Os_TE_83850 Chr8 12318944 12318945 + DS-RICE2N 613 0.1485 (415/2795) 0 * * Os_TE_83842 Chr8 12308350 12308351 + RIRE2_LTR 11306 0.0067 (17/2536) 0 * * Os_TE_83834 Chr8 12306596 12306595 - ORSgTEMT00900892 250 0.0513 (135/2631) 0 * Os_TE_83833 Os_TE_83833 Chr8 12306592 12306593 + ORSgTEMT00900388 252 0.0482 (127/2636) 0 * Os_TE_83834 Os_TE_83809 Chr8 12291496 12291495 + ORSiTERTOOT00226 792 0.0021 (6/2878) 0 * * Os_TE_83803 Chr8 12289803 12289804 + SC-7_LTR 4431 0.0003 (1/2912) 0 * * Os_TE_83780 Chr8 12279281 12279282 - TYPEM 227 0.0054 (16/2962) 0 * Os_TE_83779 Os_TE_83779 Chr8 12279280 12279279 - ORSgTEMT02400179 221 0.0054 (16/2969) 0 * Os_TE_83780 Os_TE_83771 Chr8 12278266 12278267 - MuDR4_OS 7610 0.1329 (392/2950) 0 * Os_TE_83770 Os_TE_83770 Chr8 12278257 12278256 - MuDR4_OS 7610 0.1394 (413/2963) 0 * Os_TE_83771 Os_TE_83764 Chr8 12272525 12272526 + TWIFBIG 3567 0.0318 (95/2985) 0 * Os_TE_83763 Os_TE_83763 Chr8 12272518 12272517 - ORSiTETNOOT00216 3569 0.0150 (44/2936) 0 * Os_TE_83764 Os_TE_83757 Chr8 12270577 12270578 - RETRO1_LTR 8314 0.0485 (145/2989) 0 * Os_TE_83756 Os_TE_83756 Chr8 12270573 12270572 + RETRO2A_LTR 12895 0.0495 (148/2991) 0 * Os_TE_83757 Os_TE_83750 Chr8 12265063 12265062 + STOWAWAY21_OS 243 0.1208 (343/2839) 0 * Os_TE_83749 Os_TE_83749 Chr8 12265062 12265063 + ORSgTEMT01601122 212 0.1205 (341/2829) 0 * Os_TE_83750 Os_TE_83741 Chr8 12264147 12264148 - ORSgTEMT01701366 170 0.0491 (140/2854) 0 * * Os_TE_83740 Chr8 12264098 12264099 - SZ-62LTR 3649 0.0363 (104/2864) 0 * Os_TE_83739 Os_TE_83739 Chr8 12264094 12264093 + SZ-62LTR 3649 0.0286 (81/2834) 0 * Os_TE_83740 Os_TE_83720 Chr8 12260426 12260425 - RIRE2_LTR 11306 0.0025 (7/2759) 0 * * Os_TE_83710 Chr8 12255501 12255502 + TYPEU4 402 0.0493 (145/2941) 0 * Os_TE_83709 Os_TE_83709 Chr8 12255493 12255492 - TYPEU1 380 0.0500 (147/2939) 0 * Os_TE_83710 Os_TE_83707 Chr8 12254804 12254805 + TYPEU4 402 0.0020 (6/2952) 0 * * Os_TE_83706 Chr8 12254600 12254601 + RIRE2_LTR 11306 0.0021 (6/2873) 0 * * Os_TE_83647 Chr8 12181995 12181994 - DITTO 244 0.0004 (1/2391) 0 * * Os_TE_83640 Chr8 12180088 12180089 + TRUNCATOR 2918 0.0520 (154/2961) 0 * * Os_TE_83638 Chr8 12179787 12179588 - ORSgTEMT02000041 194 0.1148 (338/2945) 1 Intact * Os_TE_83622 Chr8 12170579 12170580 - COPIA2-LTR_OS 6433 0.0007 (2/2896) 0 * * Os_TE_83621 Chr8 12170498 12170499 - RIRE2_LTR 11306 0.0524 (154/2941) 0 * Os_TE_83620 Os_TE_83620 Chr8 12170494 12170493 + RIREX_LTR 8828 0.0528 (155/2935) 0 * Os_TE_83621 Os_TE_83618 Chr8 12170035 12170036 + ORSiTERTOOT00027 10853 0.0443 (130/2933) 0 * * Os_TE_83581 Chr8 12148035 12148034 - TRUNCATOR2_LTR 2904 0.0009 (2/2275) 0 * * Os_TE_83579 Chr8 12146735 12146736 - SZ-22_LTR 4403 0.0512 (153/2989) 0 * * Os_TE_83574 Chr8 12144656 12144655 - ORSgTEMT01600639 228 0.0513 (153/2985) 0 * * Os_TE_83549 Chr8 12131505 12131506 + ORSiTERTOOT00296 5553 0.0003 (1/2980) 0 * Os_TE_83548 Os_TE_83548 Chr8 12131501 12131500 - SC-3_LTR 5748 0.0003 (1/2986) 0 * Os_TE_83549 Os_TE_83535 Chr8 12122436 12122435 + SZ-36LTR 5825 0.0545 (152/2791) 0 * * Os_TE_83515 Chr8 12117520 12117521 + COPIA2-LTR_OS 6433 0.0003 (1/2971) 0 * Os_TE_83514 Os_TE_83514 Chr8 12117516 12117515 - COPIA2-LTR_OS 6433 0.0003 (1/2980) 0 * Os_TE_83515 Os_TE_83508 Chr8 12113536 12113535 - EnSpm-13_OS 11171 0.0249 (72/2895) 0 * * Os_TE_83506 Chr8 12113414 12113415 - MuDR4_OS 7610 0.7477 (2045/2735) 0 * * Os_TE_83505 Chr8 12113413 12113412 - RIREX_LTR 8828 0.0020 (6/2949) 0 * * Os_TE_83501 Chr8 12112959 12112960 - RIRE3A_LTR 10580 0.6381 (1890/2962) 0 * Os_TE_83500 Os_TE_83500 Chr8 12112955 12112954 + ORSiTERTOOT00027 10853 0.6007 (1640/2730) 0 * Os_TE_83501 Os_TE_83490 Chr8 12111236 12111235 - ORSgTEMT00901723 248 0.1171 (348/2973) 0 * * Os_TE_83488 Chr8 12110844 12103467 + GYPSY-B_LTR 7068 0.8884 (2611/2939) 1 Intact Os_TE_83469 Os_TE_83469 Chr8 12103465 12110842 - GYPSY1-LTR_OS 8900 0.8916 (2665/2989) 1 Intact Os_TE_83488 Os_TE_83468 Chr8 12103250 12103251 + RIRE3A_LTR 10580 0.0007 (2/2668) 0 * Os_TE_83467 Os_TE_83467 Chr8 12103246 12103245 - RIRE3A_LTR 10580 0.0007 (2/2671) 0 * Os_TE_83468 Os_TE_83446 Chr8 12098312 12098059 + ORSgTEMT00901844 250 0.8897 (2646/2974) 1 Intact * Os_TE_83388 Chr8 12080269 12080270 - RIREX_LTR 8828 0.0007 (2/2999) 0 * Os_TE_83387 Os_TE_83387 Chr8 12080265 12080264 + RIREX_LTR 8828 0.0007 (2/2989) 0 * Os_TE_83388 Os_TE_83382 Chr8 12078392 12078627 - ORSgTEMT01601834 234 0.8818 (2506/2842) 1 Intact * Os_TE_83376 Chr8 12077991 12077992 + ORSgTEMT00400011 149 0.6257 (1819/2907) 0 * * Os_TE_83374 Chr8 12076041 12076042 - RIRE3A_LTR 10580 0.0481 (143/2971) 0 * * Os_TE_83373 Chr8 12075557 12075556 + ORSiTERTOOT00034 791 0.0023 (6/2615) 0 * * Os_TE_83372 Chr8 12075530 12075531 - RIREX_LTR 8828 0.1313 (352/2681) 0 * Os_TE_83371 Os_TE_83371 Chr8 12075526 12075525 + RIREX_LTR 8828 0.1172 (344/2934) 0 * Os_TE_83372 Os_TE_83351 Chr8 12068394 12068395 - SZ-62LTR 3649 0.0021 (6/2897) 0 * * Os_TE_83348 Chr8 12067842 12067843 + CPSC2_LTR 5202 0.0057 (17/2982) 0 * Os_TE_83347 Os_TE_83347 Chr8 12067838 12067837 - CPSC2_LTR 5202 0.0057 (17/2983) 0 * Os_TE_83348 Os_TE_83316 Chr8 12061524 12061523 + ORSgTEMT00101674 340 0.5239 (1534/2928) 0 * Os_TE_83314 Os_TE_83314 Chr8 12061514 12061515 + NDNA1TNA_OS 334 0.5215 (1519/2913) 0 * Os_TE_83316 Os_TE_83269 Chr8 12048081 12048082 - RIRE2_LTR 11306 0.2903 (369/1271) 0 * Os_TE_83268 Os_TE_83268 Chr8 12048077 12048076 - ORSgTERT00201216 11284 0.2868 (362/1262) 0 * Os_TE_83269 Os_TE_83267 Chr8 12048042 12048043 + ORSiTERTOOT00226 792 0.0008 (1/1276) 0 * Os_TE_83266 Os_TE_83266 Chr8 12048038 12048037 - SZ-22_LTR 4403 0.0008 (1/1284) 0 * Os_TE_83267 Os_TE_83257 Chr8 12042990 12042991 - ORSiTETNOOT00216 3569 0.2566 (302/1177) 0 * * Os_TE_83253 Chr8 12041814 12041815 + TRUNCATOR 2918 0.0836 (105/1256) 0 * Os_TE_83252 Os_TE_83252 Chr8 12041803 12041802 - TRUNCATOR 2918 0.0470 (57/1212) 0 * Os_TE_83253 Os_TE_83188 Chr8 12017766 12007436 - GYPSO_LTR 9828 0.7478 (1121/1499) 1 Intact * Os_TE_83097 Chr8 11981892 11981893 + AMYLTP 383 0.0014 (4/2852) 0 * Os_TE_83096 Os_TE_83096 Chr8 11981884 11981883 - AMYLTP 383 0.0018 (5/2855) 0 * Os_TE_83097 Os_TE_83086 Chr8 11975814 11975815 - RIREX_LTR 8828 0.0003 (1/2897) 0 * Os_TE_83085 Os_TE_83085 Chr8 11975810 11975809 + RIREX_LTR 8828 0.0003 (1/2898) 0 * Os_TE_83086 Os_TE_83084 Chr8 11974736 11974735 + F569 228 0.1616 (416/2575) 0 * * Os_TE_83061 Chr8 11964848 11964849 + COWARD-3 221 0.0003 (1/2972) 0 * * Os_TE_83058 Chr8 11959802 11959801 - ORSiTERTOOT00291 11421 0.0017 (5/2987) 0 * * Os_TE_82991 Chr8 11923534 11923535 + COPIA2-LTR_OS 6433 0.0010 (3/2897) 0 * Os_TE_82990 Os_TE_82990 Chr8 11923530 11923529 - COPIA2-LTR_OS 6433 0.0010 (3/2890) 0 * Os_TE_82991 Os_TE_82988 Chr8 11923517 11923516 - SZ-22_LTR 4403 0.0007 (2/2891) 0 * * Os_TE_82972 Chr8 11921409 11921408 - ORSiTERTOOT00365 4789 0.1167 (336/2880) 0 * * Os_TE_82926 Chr8 11904623 11904622 - TRUNCATOR 2918 0.0011 (3/2663) 0 * * Os_TE_82884 Chr8 11888880 11888881 - SC-8_LTR 4951 0.0010 (3/2960) 0 * Os_TE_82883 Os_TE_82883 Chr8 11888876 11888875 + SC-8_LTR 4951 0.0010 (3/2966) 0 * Os_TE_82884 Os_TE_82827 Chr8 11866734 11866733 - TRUNCATOR 2918 0.0007 (2/2996) 0 * Os_TE_82826 Os_TE_82826 Chr8 11866733 11866734 + TRUNCATOR 2918 0.0007 (2/2991) 0 * Os_TE_82827 Os_TE_82812 Chr8 11861953 11861952 - TRUNCATOR 2918 0.6079 (1597/2627) 0 * * Os_TE_82811 Chr8 11861952 11861953 + TRUNCATOR 2918 0.6494 (1858/2861) 0 * Os_TE_82810 Os_TE_82810 Chr8 11861946 11861945 - ORSiTERT00200154 9386 0.6005 (1553/2586) 0 * Os_TE_82811 Os_TE_82809 Chr8 11861579 11861578 - SZ-9LTR 965 0.0007 (2/2938) 0 * * Os_TE_82808 Chr8 11861308 11861309 - RIREX_LTR 8828 0.0519 (153/2946) 0 * Os_TE_82807 Os_TE_82807 Chr8 11861304 11861303 + RIREX_LTR 8828 0.0519 (153/2949) 0 * Os_TE_82808 Os_TE_82774 Chr8 11846473 11846472 + ORSiCMCM00100019 2717 0.0007 (2/2989) 0 * * Os_TE_82646 Chr8 11799322 11799323 - TRUNCATOR2_LTR 2904 0.6315 (1882/2980) 0 * Os_TE_82645 Os_TE_82645 Chr8 11799320 11799319 + ORSiCMCM00100019 2717 0.7652 (1157/1512) 0 * Os_TE_82646 Os_TE_82615 Chr8 11788843 11788844 + ORSiTERTOOT00226 792 0.0003 (1/2965) 0 * * Os_TE_82605 Chr8 11784489 11784488 + ORSgTETNOOT00908 242 0.0541 (161/2976) 0 * * Os_TE_82601 Chr8 11783595 11783596 + TELIA 141 0.0007 (2/2990) 0 * Os_TE_82600 Os_TE_82600 Chr8 11783587 11783586 - TELIA 141 0.0007 (2/2972) 0 * Os_TE_82601 Os_TE_82596 Chr8 11781533 11781534 + ORSgTETNOOT00908 242 0.0704 (211/2998) 0 * Os_TE_82595 Os_TE_82595 Chr8 11781525 11781524 + ORSgTETNOOT01219 231 0.0691 (207/2997) 0 * Os_TE_82596 Os_TE_82583 Chr8 11774916 11774915 + ORSgTEMT01601591 242 0.0706 (210/2974) 0 * Os_TE_82582 Os_TE_82582 Chr8 11774910 11774911 + STOWAWAY51_OS 246 0.0786 (204/2595) 0 * Os_TE_82583 Os_TE_82580 Chr8 11773874 11773875 - TRUNCATOR2_LTR 2904 0.0007 (2/2858) 0 * Os_TE_82579 Os_TE_82579 Chr8 11773870 11773869 + ORSiCMCM00100019 2717 0.0007 (2/2865) 0 * Os_TE_82580 Os_TE_82578 Chr8 11773759 11773760 + ORSgTETNOOT00908 242 0.0363 (98/2703) 0 * * Os_TE_82577 Chr8 11773757 11773756 + ORSgTETNOOT01834 251 0.0011 (3/2701) 0 * * Os_TE_82576 Chr8 11773346 11773347 - MuDR3_OS 8604 0.0004 (1/2782) 0 * * Os_TE_82569 Chr8 11770542 11770543 + TRUNCATOR 2918 0.0505 (151/2989) 0 * Os_TE_82568 Os_TE_82568 Chr8 11770536 11770535 - ORSiTERT00200154 9386 0.0499 (149/2987) 0 * Os_TE_82569 Os_TE_82542 Chr8 11753897 11753898 - OLO24 345 0.0003 (1/2990) 0 * Os_TE_82541 Os_TE_82541 Chr8 11753895 11753894 + OLO24 345 0.0003 (1/2992) 0 * Os_TE_82542 Os_TE_82529 Chr8 11751744 11751743 - RETROSAT2LTR 12796 0.1122 (336/2995) 0 * * Os_TE_82498 Chr8 11746416 11746415 - COPI2_LTR 4733 0.0003 (1/2995) 0 * * Os_TE_82493 Chr8 11742805 11742804 - STOWAWAY51_OS 246 0.0003 (1/2912) 0 * * Os_TE_82481 Chr8 11738847 11738846 - ORSgTEMT02000063 217 0.0505 (151/2990) 0 * * Os_TE_82465 Chr8 11732940 11732941 - RETROSAT2LTR 12796 0.0003 (1/2989) 0 * * Os_TE_82423 Chr8 11714591 11714590 + SPMLIKE 10989 0.0007 (2/2986) 0 * * Os_TE_82405 Chr8 11708459 11708460 + SC-8_LTR 4951 0.0020 (6/2990) 0 * Os_TE_82404 Os_TE_82404 Chr8 11708455 11708454 - SC-8_LTR 4951 0.0020 (6/2991) 0 * Os_TE_82405 Os_TE_82333 Chr8 11670764 11670765 + COPIA2-LTR_OS 6433 0.0008 (1/1281) 0 * Os_TE_82332 Os_TE_82332 Chr8 11670760 11670759 - COPIA2-LTR_OS 6433 0.0008 (1/1268) 0 * Os_TE_82333 Os_TE_82326 Chr8 11668721 11668720 - ORSgTERTOOT00072 10582 0.0008 (1/1314) 0 * * Os_TE_82324 Chr8 11668646 11668645 + RIREX_LTR 8828 0.0139 (18/1299) 0 * * Os_TE_82320 Chr8 11667384 11667383 - ORSgTEMT00900293 223 0.0015 (2/1321) 0 * * Os_TE_82288 Chr8 11644322 11644323 - ORSgTERT00201216 11284 0.0327 (98/2994) 0 * Os_TE_82287 Os_TE_82287 Chr8 11644318 11644317 - RIRE2_LTR 11306 0.0321 (96/2995) 0 * Os_TE_82288 Os_TE_82286 Chr8 11643415 11643416 - COPIA2-LTR_OS 6433 0.0020 (6/2991) 0 * Os_TE_82285 Os_TE_82285 Chr8 11643411 11643410 + COPIA2-LTR_OS 6433 0.0020 (6/2990) 0 * Os_TE_82286 Os_TE_82283 Chr8 11643174 11643173 - COPIA2-LTR_OS 6433 0.0004 (1/2805) 0 * * Os_TE_82282 Chr8 11643051 11643052 + RIREX_LTR 8828 0.0492 (146/2968) 0 * Os_TE_82281 Os_TE_82281 Chr8 11643047 11643046 - RIREX_LTR 8828 0.0495 (147/2969) 0 * Os_TE_82282 Os_TE_82216 Chr8 11612795 11612794 + RIREX_LTR 8828 0.1385 (413/2981) 0 * * Os_TE_82215 Chr8 11612771 11612772 - TRUNCATOR2_LTR 2904 0.0020 (6/2987) 0 * Os_TE_82214 Os_TE_82214 Chr8 11612767 11612766 + TRUNCATOR2_LTR 2904 0.0020 (6/2939) 0 * Os_TE_82215 Os_TE_82213 Chr8 11612568 11612569 + ORSiTERTOOT00027 10853 0.0003 (1/2972) 0 * Os_TE_82212 Os_TE_82212 Chr8 11612564 11612563 - RIRE3A_LTR 10580 0.0007 (2/2971) 0 * Os_TE_82213 Os_TE_82200 Chr8 11607372 11607373 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_82199 Os_TE_82199 Chr8 11607368 11607367 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_82200 Os_TE_82171 Chr8 11595244 11595243 + ORSgTETN00100092 209 0.0015 (4/2689) 0 * * Os_TE_82170 Chr8 11595230 11595231 + RIREX_LTR 8828 0.0518 (140/2702) 0 * Os_TE_82169 Os_TE_82169 Chr8 11595226 11595225 + RIREX_LTR 8828 0.0576 (155/2689) 0 * Os_TE_82170 Os_TE_82167 Chr8 11594713 11594712 + SZ-40LTR 2465 0.6307 (1156/1833) 0 * * Os_TE_82150 Chr8 11591169 11591168 - ORMOSIA 482 0.0004 (1/2706) 0 * * Os_TE_82146 Chr8 11585816 11585817 - SC-8_LTR 4951 0.0013 (4/2990) 0 * Os_TE_82145 Os_TE_82145 Chr8 11585812 11585811 + SC-8_LTR 4951 0.0013 (4/2984) 0 * Os_TE_82146 Os_TE_82142 Chr8 11583411 11583410 - TYPEU 362 0.0013 (4/2992) 0 * * Os_TE_82098 Chr8 11552184 11552185 + ORSiTERTOOT00296 5553 0.0023 (7/2996) 0 * Os_TE_82097 Os_TE_82097 Chr8 11552180 11552179 - SC-3_LTR 5748 0.0023 (7/2995) 0 * Os_TE_82098 Os_TE_82095 Chr8 11549583 11549584 + SC-3_LTR 5748 0.0017 (5/2991) 0 * Os_TE_82094 Os_TE_82094 Chr8 11549579 11549578 - SC-3_LTR 5748 0.0017 (5/2991) 0 * Os_TE_82095 Os_TE_81992 Chr8 11509793 11509794 + RIRE2_LTR 11306 0.0487 (145/2975) 0 * Os_TE_81991 Os_TE_81991 Chr8 11509789 11509788 - RIRE2_LTR 11306 0.0493 (147/2981) 0 * Os_TE_81992 Os_TE_81971 Chr8 11504680 11504681 - RIREX_LTR 8828 0.0025 (7/2840) 0 * * Os_TE_81964 Chr8 11502822 11502821 - STOWAWAY12_OS 312 0.0003 (1/2984) 0 * * Os_TE_81934 Chr8 11486813 11486812 - TYPEM 227 0.2633 (780/2962) 0 * * Os_TE_81904 Chr8 11478032 11478033 + ORSgTETNOOT01219 231 0.0327 (98/2997) 0 * * Os_TE_81893 Chr8 11469093 11469094 - MuDR3_OS 8604 0.0296 (79/2673) 0 * * Os_TE_81883 Chr8 11462597 11462598 - F569 228 0.0020 (6/2997) 0 * Os_TE_81882 Os_TE_81882 Chr8 11462595 11462594 + F569 228 0.0023 (7/2999) 0 * Os_TE_81883 Os_TE_81875 Chr8 11457399 11457400 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_81874 Os_TE_81874 Chr8 11457395 11457394 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_81875 Os_TE_81860 Chr8 11451507 11451508 - SC-3_LTR 5748 0.0007 (2/2990) 0 * Os_TE_81859 Os_TE_81859 Chr8 11451503 11451502 + ORSiTERTOOT00296 5553 0.0007 (2/2995) 0 * Os_TE_81860 Os_TE_81850 Chr8 11448592 11448593 - SC-3_LTR 5748 0.0003 (1/2986) 0 * Os_TE_81849 Os_TE_81849 Chr8 11448588 11448587 + ORSiTERTOOT00296 5553 0.0003 (1/2986) 0 * Os_TE_81850 Os_TE_81846 Chr8 11447569 11447570 - SC-8_LTR 4951 0.0023 (7/2987) 0 * * Os_TE_81835 Chr8 11441737 11441736 - RETROSAT2LTR 12796 0.0500 (150/2998) 0 * * Os_TE_81826 Chr8 11434604 11434605 + RETROFIT3_LTR 5391 0.0815 (211/2588) 0 * Os_TE_81825 Os_TE_81825 Chr8 11434600 11434599 - RETROFIT3_LTR 5391 0.0821 (213/2594) 0 * Os_TE_81826 Os_TE_81807 Chr8 11429118 11429119 + ORSiCMCM00100019 2717 0.1342 (399/2974) 0 * Os_TE_81806 Os_TE_81806 Chr8 11429114 11429113 - TRUNCATOR2_LTR 2904 0.1404 (419/2984) 0 * Os_TE_81807 Os_TE_81798 Chr8 11426088 11426087 - RIRE3_LTR 12054 0.0057 (17/2994) 0 * * Os_TE_81797 Chr8 11425678 11425679 - RETRO1_LTR 8314 0.0027 (8/2983) 0 * * Os_TE_81795 Chr8 11424976 11424977 + TRUNCATOR 2918 0.0937 (280/2988) 0 * Os_TE_81794 Os_TE_81794 Chr8 11424970 11424969 - ORSiTERT00200154 9386 0.0890 (265/2979) 0 * Os_TE_81795 Os_TE_81784 Chr8 11423962 11423963 + ORSiTERTOOT00028 8600 0.0020 (6/2992) 0 * * Os_TE_81759 Chr8 11415956 11415957 - TRUNCATOR2_LTR 2904 0.0496 (146/2945) 0 * Os_TE_81758 Os_TE_81758 Chr8 11415952 11415951 + ORSiTERTOOT00028 8600 0.0466 (137/2938) 0 * Os_TE_81759 Os_TE_81723 Chr8 11406087 11406088 + ORSiTERTOOT00381 4988 0.0003 (1/2993) 0 * * Os_TE_81718 Chr8 11403173 11403174 + ORSgTETNOOT01219 231 0.0009 (2/2304) 0 * * Os_TE_81717 Chr8 11403138 11403139 + ORSgTETNOOT00908 242 0.6982 (1784/2555) 0 * Os_TE_81716 Os_TE_81716 Chr8 11403133 11403132 + ORSgTETNOOT01219 231 0.6951 (1762/2535) 0 * Os_TE_81717 Os_TE_81713 Chr8 11399852 11399851 - NDNA1TNA_OS 334 0.0007 (2/2991) 0 * * Os_TE_81706 Chr8 11398246 11398247 + RIRE3_LTR 12054 0.0017 (5/2968) 0 * Os_TE_81705 Os_TE_81705 Chr8 11398242 11398241 - RIRE3_LTR 12054 0.0017 (5/2966) 0 * Os_TE_81706 Os_TE_81704 Chr8 11397693 11397694 + COPI2_LTR 4733 0.0003 (1/2965) 0 * * Os_TE_81697 Chr8 11395900 11395901 - RETRO2_LTR 12874 0.0731 (215/2941) 0 * Os_TE_81696 Os_TE_81696 Chr8 11395896 11395895 + RETRO2_LTR 12874 0.0708 (209/2954) 0 * Os_TE_81697 Os_TE_81694 Chr8 11395190 11395189 - TRUNCATOR 2918 0.0014 (4/2961) 0 * Os_TE_81693 Os_TE_81693 Chr8 11395189 11395190 + TRUNCATOR 2918 0.0017 (5/2965) 0 * Os_TE_81694 Os_TE_81660 Chr8 11385620 11385621 - RIRE3A_LTR 10580 0.0713 (211/2959) 0 * * Os_TE_81611 Chr8 11380462 11380461 + ORSiTERTOOT00028 8600 0.5995 (1784/2976) 0 * * Os_TE_81598 Chr8 11374959 11374958 - COPI2_LTR 4733 0.0007 (2/2882) 0 * * Os_TE_81591 Chr8 11370942 11370943 - TRUNCATOR2_LTR 2904 0.0341 (91/2666) 0 * * Os_TE_81501 Chr8 11342427 11342428 + TRUNCATOR 2918 0.0017 (5/2870) 0 * * Os_TE_81470 Chr8 11336926 11336927 - TRUNCATOR2_LTR 2904 0.0487 (146/2997) 0 * * Os_TE_81467 Chr8 11335092 11335093 + TRUNCATOR 2918 0.0896 (268/2990) 0 * Os_TE_81466 Os_TE_81466 Chr8 11335086 11335085 - ORSiTERT00200154 9386 0.0829 (246/2968) 0 * Os_TE_81467 Os_TE_81465 Chr8 11334744 11334745 - TRUNCATOR2_LTR 2904 0.0017 (5/2991) 0 * Os_TE_81464 Os_TE_81464 Chr8 11334740 11334739 + TRUNCATOR2_LTR 2904 0.0020 (6/2990) 0 * Os_TE_81465 Os_TE_81463 Chr8 11333281 11330135 - RIRE3_LTR 12054 0.1178 (352/2989) 1 Solo_LTR * Os_TE_81444 Chr8 11322443 11322444 + ORSgTETNOOT00908 242 0.0057 (17/2974) 0 * * Os_TE_81433 Chr8 11316636 11316637 + MuDR3_OS 8604 0.1444 (421/2915) 0 * Os_TE_81432 Os_TE_81432 Chr8 11316628 11316627 - MuDR3_OS 8604 0.1453 (425/2924) 0 * Os_TE_81433 Os_TE_81351 Chr8 11272687 11272688 - F569 228 0.0180 (48/2669) 0 * Os_TE_81350 Os_TE_81350 Chr8 11272685 11272684 + F569 228 0.0161 (48/2982) 0 * Os_TE_81351 Os_TE_81348 Chr8 11272646 11272645 + TWIFBIG 3567 0.0537 (139/2590) 0 * * Os_TE_81339 Chr8 11268815 11268814 + TWIF 586 0.0011 (3/2819) 0 * * Os_TE_81313 Chr8 11259148 11259149 - COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_81312 Os_TE_81312 Chr8 11259144 11259143 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_81313 Os_TE_81308 Chr8 11257278 11257277 - RIREX_LTR 8828 0.0003 (1/2994) 0 * * Os_TE_81253 Chr8 11140484 11140485 - SZ-62LTR 3649 0.0028 (8/2842) 0 * Os_TE_81252 Os_TE_81252 Chr8 11140480 11140479 + SZ-62LTR 3649 0.0025 (7/2790) 0 * Os_TE_81253 Os_TE_81237 Chr8 11134953 11134952 + RIRE3_LTR 12054 0.0010 (2/1975) 0 * * Os_TE_81220 Chr8 11130766 11130765 + STOWAWAY44_OS 240 0.0768 (202/2630) 0 * Os_TE_81219 Os_TE_81219 Chr8 11130763 11130764 - STOWAWAY44_OS 240 0.0774 (203/2624) 0 * Os_TE_81220 Os_TE_81203 Chr8 11125252 11125253 - RETROSAT4_LTR 13504 0.0024 (4/1674) 0 * * Os_TE_81175 Chr8 11102216 11102217 + RETROSAT2LTRA 3112 0.0312 (89/2852) 0 * * Os_TE_81173 Chr8 11102207 11102208 + TRUNCATOR 2918 0.0362 (107/2955) 0 * * Os_TE_81135 Chr8 11066433 11066432 - ORSgTETN00200001 10994 0.0293 (85/2899) 0 * * Os_TE_81132 Chr8 11066055 11066054 + OSCOPIA2_LTR 5476 0.5408 (1559/2883) 0 * * Os_TE_81128 Chr8 11064061 11064062 - RIREX_LTR 8828 0.0060 (18/2985) 0 * Os_TE_81127 Os_TE_81127 Chr8 11064055 11064054 + RIREX_LTR 8828 0.0060 (18/2986) 0 * Os_TE_81128 Os_TE_81113 Chr8 11056622 11056623 - SC-8_LTR 4951 0.0007 (2/2983) 0 * Os_TE_81112 Os_TE_81112 Chr8 11056618 11056617 + SC-8_LTR 4951 0.0007 (2/2983) 0 * Os_TE_81113 Os_TE_81097 Chr8 11049952 11038762 - ORSgTETN00200001 10994 0.1130 (337/2982) 1 Intact Os_TE_81089 Os_TE_81089 Chr8 11038763 11049952 + SPMLIKE 10989 0.1112 (331/2976) 1 Intact Os_TE_81097 Os_TE_81077 Chr8 11032112 11032111 - MUDRN1_OS 764 0.5940 (1750/2946) 0 * * Os_TE_81075 Chr8 11031954 11031955 + RETRO2A_LTR 12895 0.0370 (108/2922) 0 * Os_TE_81074 Os_TE_81074 Chr8 11031950 11031949 - RETRO1_LTR 8314 0.0360 (105/2915) 0 * Os_TE_81075 Os_TE_81070 Chr8 11030796 11030797 - COPI2_LTR 4733 0.0003 (1/2988) 0 * Os_TE_81069 Os_TE_81069 Chr8 11030792 11030791 + COPI2_LTR 4733 0.0003 (1/2992) 0 * Os_TE_81070 Os_TE_80996 Chr8 10999568 10999569 - RIRE3_LTR 12054 0.0494 (148/2994) 0 * * Os_TE_80943 Chr8 10973817 10973816 + TRUNCATOR 2918 0.0017 (5/2955) 0 * * Os_TE_80934 Chr8 10970526 10970527 - RIRE3A_LTR 10580 0.0315 (91/2892) 0 * * Os_TE_80919 Chr8 10966047 10966048 - COPI2_LTR 4733 0.0003 (1/2991) 0 * Os_TE_80918 Os_TE_80918 Chr8 10966043 10966042 + COPI2_LTR 4733 0.0003 (1/2992) 0 * Os_TE_80919 Os_TE_80912 Chr8 10959037 10959036 - TYPEM 227 0.4342 (1218/2805) 0 * * Os_TE_80909 Chr8 10958627 10958626 + CRM-LTR_OS 7749 0.0003 (1/2998) 0 * * Os_TE_80905 Chr8 10955449 10955450 + RETRO2A_LTR 12895 0.0060 (18/2999) 0 * Os_TE_80904 Os_TE_80904 Chr8 10955445 10955444 - RETRO1_LTR 8314 0.0057 (17/2998) 0 * Os_TE_80905 Os_TE_80902 Chr8 10954940 10954939 - TRUNCATOR2_LTR 2904 0.0003 (1/2997) 0 * * Os_TE_80901 Chr8 10954714 10954715 + RIRE3A_LTR 10580 0.0477 (143/2998) 0 * Os_TE_80900 Os_TE_80900 Chr8 10954710 10954709 - RIRE3A_LTR 10580 0.0497 (149/2999) 0 * Os_TE_80901 Os_TE_80887 Chr8 10947412 10947411 + RIRE3A_LTR 10580 0.0017 (5/2987) 0 * * Os_TE_80878 Chr8 10944963 10944962 - COPIA2-LTR_OS 6433 0.0003 (1/2983) 0 * * Os_TE_80865 Chr8 10938333 10938334 + SPMLIKE 10989 0.0021 (6/2883) 0 * * Os_TE_80854 Chr8 10937269 10937270 - ORSgTERT00201216 11284 0.0451 (130/2881) 0 * Os_TE_80853 Os_TE_80853 Chr8 10937265 10937264 - RIRE2_LTR 11306 0.0431 (124/2874) 0 * Os_TE_80854 Os_TE_80849 Chr8 10933954 10933955 - ORSgTETN00200001 10994 0.0007 (2/2986) 0 * Os_TE_80848 Os_TE_80848 Chr8 10933952 10933951 + SPMLIKE 10989 0.0007 (2/2988) 0 * Os_TE_80849 Os_TE_80808 Chr8 10911985 10911986 - INDITTO 263 0.0003 (1/2992) 0 * Os_TE_80807 Os_TE_80807 Chr8 10911983 10911982 + INDITTO 263 0.0003 (1/2988) 0 * Os_TE_80808 Os_TE_80803 Chr8 10906427 10906426 - RIREX_LTR 8828 0.0003 (1/2983) 0 * * Os_TE_80785 Chr8 10902766 10902767 + ORSiTERTOOT00226 792 0.0003 (1/2988) 0 * * Os_TE_80769 Chr8 10895567 10895288 + KIDDOD 279 0.8564 (2565/2995) 1 Intact Os_TE_80768 Os_TE_80768 Chr8 10895288 10895567 - KIDDOD 279 0.8550 (2565/3000) 1 Intact Os_TE_80769 Os_TE_80767 Chr8 10893755 10893754 - TRUNCATOR 2918 0.1460 (437/2993) 0 * * Os_TE_80764 Chr8 10892111 10892112 - TRUNCATOR2_LTR 2904 0.0054 (16/2989) 0 * Os_TE_80763 Os_TE_80763 Chr8 10892107 10892106 + ORSiCMCM00100019 2717 0.0053 (16/2993) 0 * Os_TE_80764 Os_TE_80762 Chr8 10891775 10891776 - ORSgTERT00200284 429 0.0003 (1/2987) 0 * * Os_TE_80741 Chr8 10884460 10884461 - TEMPINDAS 4259 0.0067 (17/2548) 0 * * Os_TE_80673 Chr8 10854494 10854493 - NDNA1TNA_OS 334 0.0023 (7/2990) 0 * * Os_TE_80652 Chr8 10839065 10839066 - TRUNCATOR2_LTR 2904 0.7048 (2106/2988) 0 * Os_TE_80651 Os_TE_80651 Chr8 10839062 10839061 + ORSiCMCM00100019 2717 0.6973 (2050/2940) 0 * Os_TE_80652 Os_TE_80645 Chr8 10837872 10837871 + TRUNCATOR 2918 0.0364 (109/2993) 0 * * Os_TE_80607 Chr8 10817622 10817621 - TEMPINDAS 4259 0.0057 (17/2978) 0 * * Os_TE_80601 Chr8 10813908 10813909 + RETROSAT3_LTR 11537 0.0707 (210/2971) 0 * Os_TE_80600 Os_TE_80600 Chr8 10813904 10813903 - RETROSAT3_LTR 11537 0.0739 (220/2978) 0 * Os_TE_80601 Os_TE_80599 Chr8 10813722 10813723 + MuDR3_OS 8604 0.2253 (669/2970) 0 * Os_TE_80598 Os_TE_80598 Chr8 10813714 10813713 - MuDR3_OS 8604 0.2201 (649/2948) 0 * Os_TE_80599 Os_TE_80589 Chr8 10807662 10807663 + SPMLIKE 10989 0.0710 (212/2987) 0 * Os_TE_80588 Os_TE_80588 Chr8 10807660 10807659 - ORSgTETN00200001 10994 0.0703 (208/2958) 0 * Os_TE_80589 Os_TE_80552 Chr8 10788183 10788182 - TRUNCATOR 2918 0.4941 (1250/2530) 0 * Os_TE_80551 Os_TE_80551 Chr8 10788182 10788183 + TRUNCATOR 2918 0.5087 (1310/2575) 0 * Os_TE_80552 Os_TE_80547 Chr8 10784406 10784407 - ORSgTETN00200001 10994 0.0031 (9/2870) 0 * Os_TE_80546 Os_TE_80546 Chr8 10784404 10784403 + CACTA-M 1129 0.0038 (11/2883) 0 * Os_TE_80547 Os_TE_80544 Chr8 10784160 10784159 + COPIA2-LTR_OS 6433 0.0006 (1/1725) 0 * * Os_TE_80540 Chr8 10783645 10784176 + MERMITE18A 532 0.5787 (1713/2960) 1 Intact * Os_TE_80510 Chr8 10769694 10769695 - CLOUD 734 0.0304 (91/2992) 0 * Os_TE_80509 Os_TE_80509 Chr8 10769686 10769685 - CLOUD 734 0.0301 (90/2992) 0 * Os_TE_80510 Os_TE_80495 Chr8 10759523 10759524 + TWIF 586 0.0007 (2/2969) 0 * * Os_TE_80477 Chr8 10755017 10755018 - MuDR3_OS 8604 0.0055 (16/2921) 0 * Os_TE_80476 Os_TE_80476 Chr8 10755008 10755007 - MuDR3_OS 8604 0.0051 (15/2924) 0 * Os_TE_80477 Os_TE_80475 Chr8 10754963 10754964 - TRUNCATOR2_LTR 2904 0.0422 (124/2941) 0 * * Os_TE_80465 Chr8 10751904 10751905 - HATOS1 3488 0.0023 (7/2996) 0 * Os_TE_80464 Os_TE_80464 Chr8 10751897 10751896 + QINNIU 528 0.0023 (7/2997) 0 * Os_TE_80465 Os_TE_80448 Chr8 10744198 10744197 + NDNA1TNA_OS 334 0.0007 (2/2989) 0 * * Os_TE_80445 Chr8 10742569 10742570 + TRUNCATOR 2918 0.0054 (16/2983) 0 * Os_TE_80444 Os_TE_80444 Chr8 10742563 10742562 - ORSiTERT00200154 9386 0.0050 (15/2983) 0 * Os_TE_80445 Os_TE_80442 Chr8 10742275 10742274 + TRUNCATOR 2918 0.3539 (1055/2981) 0 * * Os_TE_80439 Chr8 10742139 10742138 - RIREX_LTR 8828 0.0024 (7/2959) 0 * * Os_TE_80409 Chr8 10729803 10729804 - AMYLTP 383 0.0300 (85/2837) 0 * * Os_TE_80399 Chr8 10727107 10727108 + ORSgTEMT01601934 207 0.0742 (206/2778) 0 * * Os_TE_80380 Chr8 10721726 10721725 - RETRO1_LTR 8314 0.0319 (94/2945) 0 * * Os_TE_80376 Chr8 10718212 10718213 + RIREX_LTR 8828 0.0023 (7/2991) 0 * * Os_TE_80375 Chr8 10717314 10717315 - ORSiTERT00100062 5674 0.0007 (2/2987) 0 * Os_TE_80374 Os_TE_80374 Chr8 10717310 10717309 + OSTONOR1_LTR 6440 0.0010 (3/2982) 0 * Os_TE_80375 Os_TE_80371 Chr8 10716278 10716279 - COPI2_LTR 4733 0.0024 (7/2953) 0 * Os_TE_80370 Os_TE_80370 Chr8 10716274 10716273 + COPI2_LTR 4733 0.0020 (6/2952) 0 * Os_TE_80371 Os_TE_80339 Chr8 10701302 10701301 + RIRE3A_LTR 10580 0.0003 (1/2968) 0 * * Os_TE_80311 Chr8 10694262 10694261 + TRUNCATOR 2918 0.1930 (577/2990) 0 * * Os_TE_80299 Chr8 10691742 10691741 + TRSA_OS 353 0.0005 (1/2220) 0 * * Os_TE_80296 Chr8 10690006 10686544 - SEVERIN-2 1952 0.1184 (352/2973) 1 Intact * Os_TE_80291 Chr8 10686160 10686159 - RIRE3A_LTR 10580 0.0003 (1/2987) 0 * * Os_TE_80290 Chr8 10686102 10686103 - RIREX_LTR 8828 0.0023 (7/2982) 0 * Os_TE_80289 Os_TE_80289 Chr8 10686098 10686097 + RIREX_LTR 8828 0.0023 (7/2988) 0 * Os_TE_80290 Os_TE_80279 Chr8 10683996 10683997 + ORSiTEMT02400001 188 0.0003 (1/2905) 0 * * Os_TE_80250 Chr8 10680850 10680851 - COPIA2-LTR_OS 6433 0.0003 (1/2982) 0 * Os_TE_80249 Os_TE_80249 Chr8 10680846 10680845 + COPIA2-LTR_OS 6433 0.0003 (1/2979) 0 * Os_TE_80250 Os_TE_80243 Chr8 10679222 10679221 + RIREX_LTR 8828 0.0003 (1/2965) 0 * * Os_TE_80242 Chr8 10679171 10679172 - TRUNCATOR2_LTR 2904 0.0010 (3/2991) 0 * Os_TE_80241 Os_TE_80241 Chr8 10679167 10679166 + TRUNCATOR2_LTR 2904 0.0010 (3/2988) 0 * Os_TE_80242 Os_TE_80233 Chr8 10677458 10677459 - TRUNCATOR2_LTR 2904 0.1462 (438/2995) 0 * Os_TE_80232 Os_TE_80232 Chr8 10677454 10677453 - TRUNCATOR2_LTR 2904 0.1446 (432/2987) 0 * Os_TE_80233 Os_TE_80172 Chr8 10655509 10655510 - COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_80171 Os_TE_80171 Chr8 10655505 10655504 + COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_80172 Os_TE_80169 Chr8 10654015 10654014 - STOWAWAY51_OS 246 0.0027 (8/2985) 0 * Os_TE_80168 Os_TE_80168 Chr8 10654012 10654013 - STOWAWAY51_OS 246 0.0030 (9/2993) 0 * Os_TE_80169 Os_TE_80167 Chr8 10653796 10653795 - COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * * Os_TE_80165 Chr8 10652864 10652865 - COPIA2-LTR_OS 6433 0.0003 (1/2982) 0 * * Os_TE_80163 Chr8 10652102 10652103 - TEMPINDAS 4259 0.0896 (267/2980) 0 * * Os_TE_80161 Chr8 10652079 10652078 - RIREX_LTR 8828 0.0003 (1/2908) 0 * * Os_TE_80144 Chr8 10647351 10647352 - RIREX_LTR 8828 0.0430 (125/2906) 0 * Os_TE_80143 Os_TE_80143 Chr8 10647347 10647346 + RIREX_LTR 8828 0.0415 (120/2894) 0 * Os_TE_80144 Os_TE_80142 Chr8 10646971 10646972 - COPIA2-LTR_OS 6433 0.0003 (1/2983) 0 * Os_TE_80141 Os_TE_80141 Chr8 10646967 10646966 + COPIA2-LTR_OS 6433 0.0003 (1/2986) 0 * Os_TE_80142 Os_TE_80140 Chr8 10646894 10646895 + NDNA1TNA_OS 334 0.0047 (14/2993) 0 * Os_TE_80139 Os_TE_80139 Chr8 10646892 10646891 - NDNA1TNA_OS 334 0.0047 (14/2987) 0 * Os_TE_80140 Os_TE_80133 Chr8 10644439 10644440 - RIREX_LTR 8828 0.0378 (113/2990) 0 * Os_TE_80132 Os_TE_80132 Chr8 10644435 10644434 + RIREX_LTR 8828 0.0371 (111/2989) 0 * Os_TE_80133 Os_TE_80125 Chr8 10643898 10643897 + TRUNCATOR 2918 0.1472 (441/2996) 0 * * Os_TE_80107 Chr8 10637294 10637295 + SC-8_LTR 4951 0.0003 (1/2981) 0 * Os_TE_80106 Os_TE_80106 Chr8 10637290 10637289 - SC-8_LTR 4951 0.0003 (1/2983) 0 * Os_TE_80107 Os_TE_80079 Chr8 10624781 10624782 - LIER 339 0.0017 (5/2969) 0 * * Os_TE_80076 Chr8 10623412 10623413 - COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_80075 Os_TE_80075 Chr8 10623408 10623407 + COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_80076 Os_TE_80072 Chr8 10622718 10622717 - RETRO1_LTR 8314 0.1447 (433/2992) 0 * * Os_TE_80070 Chr8 10621347 10621348 + RETRO2_LTR 12874 0.0305 (91/2988) 0 * * Os_TE_80061 Chr8 10619566 10619565 - TEMPINDAS 4259 0.3577 (1065/2977) 0 * * Os_TE_80058 Chr8 10618797 10618798 + ORSgTETNOOT01219 231 0.0007 (2/2961) 0 * Os_TE_80057 Os_TE_80057 Chr8 10618791 10618790 + ORSgTETNOOT00908 242 0.0003 (1/2967) 0 * Os_TE_80058 Os_TE_80053 Chr8 10618184 10618183 + SINE1OS 127 0.6623 (1969/2973) 0 * * Os_TE_79970 Chr8 10595739 10595740 - RIRE2_LTR 11306 0.0010 (3/2920) 0 * Os_TE_79969 Os_TE_79969 Chr8 10595735 10595734 - ORSgTERT00201216 11284 0.0007 (2/2927) 0 * Os_TE_79970 Os_TE_79967 Chr8 10594124 10594125 + SZ-30_LTR 6377 0.0017 (5/2991) 0 * Os_TE_79966 Os_TE_79966 Chr8 10594120 10594119 - SZ-5LTR 1223 0.0017 (5/2990) 0 * Os_TE_79967 Os_TE_79963 Chr8 10588379 10588378 + ORSgTEMT01601445 230 0.0011 (1/917) -1 * * Os_TE_79958 Chr8 10587569 10587570 - ORSgTEMT02000041 194 0.0379 (110/2901) 0 * * Os_TE_79949 Chr8 10584648 10584647 - STOWAWAY51_OS 246 0.0003 (1/2995) 0 * Os_TE_79948 Os_TE_79948 Chr8 10584645 10584646 - STOWAWAY51_OS 246 0.0003 (1/2993) 0 * Os_TE_79949 Os_TE_79942 Chr8 10582457 10582458 - COPI2_LTR 4733 0.0004 (1/2754) 0 * * Os_TE_79940 Chr8 10582418 10582417 + TRUNCATOR 2918 0.1536 (443/2884) 0 * Os_TE_79939 Os_TE_79939 Chr8 10582413 10582414 - TRUNCATOR 2918 0.1382 (397/2873) 0 * Os_TE_79940 Os_TE_79937 Chr8 10581989 10581026 - ORSiTERTOOT00274 4749 0.8786 (2592/2950) 1 Intact * Os_TE_79928 Chr8 10581010 10581009 + SZ-39LTR 948 0.0010 (3/2983) 0 * * Os_TE_79923 Chr8 10579884 10579883 - COPI2_LTR 4733 0.0003 (1/2990) 0 * * Os_TE_79919 Chr8 10578723 10578724 - RETROSAT2LTR 12796 0.0374 (112/2993) 0 * Os_TE_79918 Os_TE_79918 Chr8 10578721 10578720 + RETROSAT2LTR 12796 0.0362 (108/2980) 0 * Os_TE_79919 Os_TE_79837 Chr8 10541493 10541494 + TRUNCATOR 2918 0.0008 (2/2452) 0 * * Os_TE_79834 Chr8 10540608 10540609 - RIRE2_LTR 11306 0.0004 (1/2430) 0 * * Os_TE_79798 Chr8 10523675 10523676 - RIRE2_LTR 11306 0.0007 (2/2935) 0 * * Os_TE_79749 Chr8 10512557 10512558 - AMYLTP 383 0.0047 (14/2964) 0 * Os_TE_79748 Os_TE_79748 Chr8 10512549 10512548 + AMYLTP 383 0.0047 (14/2966) 0 * Os_TE_79749 Os_TE_79728 Chr8 10506882 10506536 - NDNA2TNA_OS 346 0.4336 (1290/2975) 1 Intact Os_TE_79725 Os_TE_79725 Chr8 10506535 10506882 + NDNA2TNA_OS 346 0.4417 (1319/2986) 1 Intact Os_TE_79728 Os_TE_79687 Chr8 10495853 10495854 - RIREX_LTR 8828 0.0407 (121/2970) 0 * * Os_TE_79681 Chr8 10494318 10494319 - SZ-40LTR 2465 0.0027 (8/2998) 0 * * Os_TE_79679 Chr8 10493880 10493881 + TRUNCATOR 2918 0.0047 (14/2998) 0 * * Os_TE_79670 Chr8 10489877 10489878 - EnSpm-16_OS 13336 0.0010 (3/2992) 0 * * Os_TE_79668 Chr8 10489160 10489161 - ORSiTERTOOT00183 3603 0.0003 (1/2978) 0 * * Os_TE_79626 Chr8 10472819 10472818 + TRUNCATOR 2918 0.0345 (103/2984) 0 * * Os_TE_79624 Chr8 10472443 10472442 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * * Os_TE_79623 Chr8 10472301 10472302 - ORSgTETN00200001 10994 0.0330 (98/2971) 0 * Os_TE_79622 Os_TE_79622 Chr8 10472299 10472298 + SPMLIKE 10989 0.0323 (96/2972) 0 * Os_TE_79623 Os_TE_79609 Chr8 10468349 10468350 + AMYLTP 383 0.0021 (6/2845) 0 * Os_TE_79608 Os_TE_79608 Chr8 10468341 10468340 - AMYLTP 383 0.0007 (2/2844) 0 * Os_TE_79609 Os_TE_79604 Chr8 10467653 10467654 + SPMLIKE 10989 0.0315 (90/2853) 0 * Os_TE_79603 Os_TE_79603 Chr8 10467651 10467650 - ORSgTETN00200001 10994 0.0281 (80/2847) 0 * Os_TE_79604 Os_TE_79601 Chr8 10467079 10467080 - RIRE2_LTR 11306 0.0414 (121/2922) 0 * * Os_TE_79588 Chr8 10457107 10457108 - ORSgTETN00200001 10994 0.0010 (3/2940) 0 * Os_TE_79587 Os_TE_79587 Chr8 10457105 10457104 + SPMLIKE 10989 0.0047 (14/2950) 0 * Os_TE_79588 Os_TE_79582 Chr8 10453382 10453383 - ORSiTEMT01000008 242 0.0003 (1/2972) 0 * * Os_TE_79469 Chr8 10396359 10396360 - CRM-LTR_OS 7749 0.0006 (1/1553) 0 * Os_TE_79468 Os_TE_79468 Chr8 10396355 10396354 + CRM-LTR_OS 7749 0.0006 (1/1556) 0 * Os_TE_79469 Os_TE_79465 Chr8 10396012 10396011 + ORSiTERTOOT00226 792 0.0003 (1/2985) 0 * * Os_TE_79464 Chr8 10395979 10395978 + ORSiTERTOOT00034 791 0.0013 (4/2972) 0 * * Os_TE_79419 Chr8 10380191 10380192 - ORSgTEMT00700002 381 0.0007 (2/2927) 0 * * Os_TE_79364 Chr8 10369666 10369667 + TWIFBIG 3567 0.0859 (257/2991) 0 * * Os_TE_79362 Chr8 10366954 10366955 + MPING 430 0.0003 (1/2926) 0 * Os_TE_79361 Os_TE_79361 Chr8 10366952 10366951 - MPING 430 0.0003 (1/2888) 0 * Os_TE_79362 Os_TE_79272 Chr8 10330595 10330596 + SC-3_LTR 5748 0.0017 (5/2993) 0 * Os_TE_79271 Os_TE_79271 Chr8 10330591 10330590 - SC-3_LTR 5748 0.0017 (5/2991) 0 * Os_TE_79272 Os_TE_79234 Chr8 10320853 10320854 - TRUNCATOR2_LTR 2904 0.0003 (1/2985) 0 * Os_TE_79233 Os_TE_79233 Chr8 10320849 10320848 + ORSiCMCM00100019 2717 0.0003 (1/2982) 0 * Os_TE_79234 Os_TE_79231 Chr8 10320382 10320383 - SZ-40LTR 2465 0.0385 (115/2985) 0 * Os_TE_79230 Os_TE_79230 Chr8 10320378 10320377 + GYPSY-A_LTR 8951 0.0372 (111/2980) 0 * Os_TE_79231 Os_TE_79216 Chr8 10312779 10312780 + SZ-40LTR 2465 0.0013 (4/2991) 0 * Os_TE_79215 Os_TE_79215 Chr8 10312775 10312774 - GYPSY-A_LTR 8951 0.0013 (4/2990) 0 * Os_TE_79216 Os_TE_79193 Chr8 10308667 10308668 + RETRO2_LTR 12874 0.0060 (18/2995) 0 * Os_TE_79192 Os_TE_79192 Chr8 10308663 10308662 - RETRO2_LTR 12874 0.0060 (18/2995) 0 * Os_TE_79193 Os_TE_79189 Chr8 10306810 10306811 - RETRO2_LTR 12874 0.7546 (2192/2905) 0 * * Os_TE_79188 Chr8 10306578 10306577 - TRUNCATOR 2918 0.7324 (1995/2724) 0 * Os_TE_79187 Os_TE_79187 Chr8 10306577 10306578 + TRUNCATOR 2918 0.7663 (2285/2982) 0 * Os_TE_79188 Os_TE_79115 Chr8 10283287 10283288 + COPIA2-LTR_OS 6433 0.0003 (1/2882) 0 * Os_TE_79114 Os_TE_79114 Chr8 10283283 10283282 - COPIA2-LTR_OS 6433 0.0003 (1/2879) 0 * Os_TE_79115 Os_TE_79089 Chr8 10273485 10273484 - TRUNCATOR2_LTR 2904 0.0020 (6/2985) 0 * * Os_TE_79066 Chr8 10265662 10265663 + SC-8_LTR 4951 0.0003 (1/2971) 0 * Os_TE_79065 Os_TE_79065 Chr8 10265658 10265657 - SC-8_LTR 4951 0.0003 (1/2975) 0 * Os_TE_79066 Os_TE_79062 Chr8 10263561 10263560 - RIRE3_LTR 12054 0.0003 (1/2949) 0 * * Os_TE_79050 Chr8 10257188 10257189 + RETROSAT2LTRA 3112 0.0019 (4/2073) 0 * * Os_TE_79045 Chr8 10253754 10253753 - RETROSAT2LTR 12796 0.0327 (98/2994) 0 * Os_TE_79044 Os_TE_79044 Chr8 10253749 10253750 + RETROSAT2LTR 12796 0.0327 (98/2995) 0 * Os_TE_79045 Os_TE_79026 Chr8 10243783 10243784 + GYPSY-A_LTR 8951 0.0331 (99/2995) 0 * Os_TE_79025 Os_TE_79025 Chr8 10243779 10243778 - GYPSY-A_LTR 8951 0.0024 (7/2914) 0 * Os_TE_79026 Os_TE_78957 Chr8 10212891 10209385 - SEVERIN-2 1952 0.1158 (345/2979) 1 Intact * Os_TE_78937 Chr8 10201110 10201111 + SZ-4_LTR 5991 0.0003 (1/2937) 0 * * Os_TE_78925 Chr8 10196587 10196588 - INDITTO 263 0.3928 (1009/2569) 0 * Os_TE_78924 Os_TE_78924 Chr8 10196585 10196584 + INDITTO 263 0.3868 (981/2536) 0 * Os_TE_78925 Os_TE_78892 Chr8 10191715 10191714 - SEVERIN-2 1952 0.0009 (2/2248) 0 * * Os_TE_78888 Chr8 10189423 10189424 + COPI2_LTR 4733 0.0007 (2/2983) 0 * Os_TE_78887 Os_TE_78887 Chr8 10189419 10189418 - COPI2_LTR 4733 0.0007 (2/2985) 0 * Os_TE_78888 Os_TE_78884 Chr8 10184352 10187861 - SEVERIN-2 1952 0.1438 (344/2393) 1 Intact * Os_TE_78871 Chr8 10177796 10174347 - SEVERIN-2 1952 0.1245 (371/2979) 1 Intact Os_TE_78870 Os_TE_78870 Chr8 10174347 10177796 + SEVERIN-2 1952 0.1362 (392/2879) 1 Intact Os_TE_78871 Os_TE_78869 Chr8 10174312 10174313 - TOURIST-XI 219 0.4446 (1328/2987) 0 * Os_TE_78868 Os_TE_78868 Chr8 10174309 10174308 + ORSgTETNOOT01834 251 0.4321 (1231/2849) 0 * Os_TE_78869 Os_TE_78867 Chr8 10174173 10174174 - RIREX_LTR 8828 0.0003 (1/2988) 0 * * Os_TE_78863 Chr8 10172372 10172373 - RIRE3_LTR 12054 0.0087 (26/2993) 0 * Os_TE_78862 Os_TE_78862 Chr8 10172368 10172367 + RIRE3_LTR 12054 0.0087 (26/2993) 0 * Os_TE_78863 Os_TE_78859 Chr8 10169391 10169392 - COPIA2-LTR_OS 6433 0.1904 (570/2993) 0 * Os_TE_78858 Os_TE_78858 Chr8 10169387 10169386 + COPIA2-LTR_OS 6433 0.1827 (544/2978) 0 * Os_TE_78859 Os_TE_78857 Chr8 10168886 10168887 - RIRE2_LTR 11306 0.0515 (144/2797) 0 * Os_TE_78856 Os_TE_78856 Chr8 10168882 10168881 + RIRE2_LTR 11306 0.0515 (144/2797) 0 * Os_TE_78857 Os_TE_78833 Chr8 10159083 10159082 + ORSgTETNOOT01834 251 0.0007 (2/2980) 0 * * Os_TE_78832 Chr8 10159077 10159078 + SZ-22_LTR 4403 0.3500 (1045/2986) 0 * * Os_TE_78817 Chr8 10153860 10153861 + ORSiTERTOOT00296 5553 0.0010 (3/2989) 0 * Os_TE_78816 Os_TE_78816 Chr8 10153856 10153855 - SC-3_LTR 5748 0.0010 (3/2991) 0 * Os_TE_78817 Os_TE_78814 Chr8 10152039 10152040 + ORSgTEMT00800040 372 0.0021 (6/2855) 0 * Os_TE_78813 Os_TE_78813 Chr8 10152031 10152030 + AMYLTP 383 0.0014 (4/2866) 0 * Os_TE_78814 Os_TE_78801 Chr8 10147375 10147374 + COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * * Os_TE_78793 Chr8 10145679 10145680 - ORSgTEMT00900293 223 0.0004 (1/2736) 0 * * Os_TE_78773 Chr8 10141747 10141748 - TELIA 141 0.0017 (5/2991) 0 * Os_TE_78772 Os_TE_78772 Chr8 10141739 10141738 + TELIA 141 0.0017 (5/2991) 0 * Os_TE_78773 Os_TE_78752 Chr8 10131734 10131735 + SETARIA2 1142 0.2130 (623/2925) 0 * * Os_TE_78750 Chr8 10131706 10131707 - ORSgTEMT02400179 221 0.0007 (2/2921) 0 * Os_TE_78749 Os_TE_78749 Chr8 10131705 10131704 - TYPEM 227 0.0007 (2/2720) 0 * Os_TE_78750 Os_TE_78744 Chr8 10129416 10129417 + SPMLIKE 10989 0.0710 (203/2858) 0 * Os_TE_78743 Os_TE_78743 Chr8 10129414 10129413 - ORSgTETN00200001 10994 0.0661 (189/2861) 0 * Os_TE_78744 Os_TE_78682 Chr8 10107010 10107011 + AMYLTP 383 0.0014 (4/2916) 0 * * Os_TE_78679 Chr8 10106948 10106949 + ORSgTEMT00901422 244 0.0010 (3/2932) 0 * * Os_TE_78664 Chr8 10104278 10104279 - ORSgTEMT02400179 221 0.0007 (2/2958) 0 * Os_TE_78663 Os_TE_78663 Chr8 10104277 10104276 - TYPEM 227 0.0007 (2/2971) 0 * Os_TE_78664 Os_TE_78661 Chr8 10101356 10101357 - OSLINE1-5 4688 0.0012 (3/2525) 0 * * Os_TE_78659 Chr8 10100091 10100092 - SC-3_LTR 5748 0.0010 (3/2997) 0 * Os_TE_78658 Os_TE_78658 Chr8 10100087 10100086 + ORSiTERTOOT00296 5553 0.0010 (3/2998) 0 * Os_TE_78659 Os_TE_78657 Chr8 10099652 10099653 + ORSiTERTOOT00296 5553 0.0003 (1/2993) 0 * Os_TE_78656 Os_TE_78656 Chr8 10099648 10099647 - SC-3_LTR 5748 0.0005 (1/2183) 0 * Os_TE_78657 Os_TE_78655 Chr8 10097855 10097856 - INDITTO 263 0.2948 (861/2921) 0 * Os_TE_78654 Os_TE_78654 Chr8 10097853 10097852 - ORSgTETNOOT02417 265 0.3120 (923/2958) 0 * Os_TE_78655 Os_TE_78648 Chr8 10096720 10096719 - RETRO2_LTR 12874 0.0007 (2/2957) 0 * * Os_TE_78644 Chr8 10095862 10095863 + RIREX_LTR 8828 0.0003 (1/2980) 0 * Os_TE_78643 Os_TE_78643 Chr8 10095858 10095857 - RIREX_LTR 8828 0.0003 (1/2980) 0 * Os_TE_78644 Os_TE_78640 Chr8 10094813 10094814 + RIRE2_LTR 11306 0.0405 (121/2987) 0 * Os_TE_78639 Os_TE_78639 Chr8 10094809 10094808 - RIRE2_LTR 11306 0.0391 (117/2989) 0 * Os_TE_78640 Os_TE_78618 Chr8 10091426 10091427 - TYPEM 227 0.0007 (2/2942) 0 * * Os_TE_78616 Chr8 10091018 10091019 - MPING 430 0.0003 (1/2976) 0 * * Os_TE_78593 Chr8 10077493 10077494 + OSTE33 1012 0.0551 (129/2341) 0 * Os_TE_78592 Os_TE_78592 Chr8 10077484 10077483 - OSTE33 1012 0.0573 (134/2339) 0 * Os_TE_78593 Os_TE_78591 Chr8 10075368 10075369 - RIREX_LTR 8828 0.1342 (315/2347) 0 * Os_TE_78590 Os_TE_78590 Chr8 10075364 10075363 + RIREX_LTR 8828 0.1322 (311/2353) 0 * Os_TE_78591 Os_TE_78587 Chr8 10073569 10073570 - MDR2 6967 0.0025 (5/2019) 0 * * Os_TE_78584 Chr8 10071756 10071755 + ENSPM6_OS 9815 0.1044 (138/1322) 0 * * Os_TE_78583 Chr8 10071007 10071008 + ENSPM6_OS 9815 0.0519 (63/1214) 0 * * Os_TE_78553 Chr8 10059993 10060278 + YOUREN 286 0.5922 (1359/2295) 1 Intact * Os_TE_78535 Chr8 10051448 10051449 + TRUNCATOR 2918 0.0012 (2/1718) 0 * * Os_TE_78530 Chr8 10050775 10050774 - ORSgTEMT00901777 249 0.0005 (1/1835) 0 * * Os_TE_78528 Chr8 10048560 10048559 + SZ-38 8643 0.0025 (5/2025) 0 * * Os_TE_78514 Chr8 10040777 10040776 - TRUNCATOR 2918 0.4402 (887/2015) 0 * Os_TE_78513 Os_TE_78513 Chr8 10040776 10040777 + TRUNCATOR 2918 0.4519 (920/2036) 0 * Os_TE_78514 Os_TE_78497 Chr8 10025856 10025857 - RIRE2_LTR 11306 0.0440 (104/2365) 0 * Os_TE_78496 Os_TE_78496 Chr8 10025852 10025851 - ORSgTERT00201216 11284 0.0464 (110/2372) 0 * Os_TE_78497 Os_TE_78418 Chr8 9989792 9989793 + DS-RICE2N 613 0.0702 (141/2008) 0 * Os_TE_78417 Os_TE_78417 Chr8 9989785 9989784 - DS-RICE2N 613 0.0701 (141/2011) 0 * Os_TE_78418 Os_TE_78413 Chr8 9987885 9987884 + SPMLIKE 10989 0.0821 (142/1729) 0 * * Os_TE_78412 Chr8 9986208 9986209 - SC-3_LTR 5748 0.0773 (141/1825) 0 * * Os_TE_78370 Chr8 9955514 9955513 + ORSgTEMT00700017 386 0.0005 (1/1987) 0 * * Os_TE_78365 Chr8 9953860 9953861 + ORSiTERTOOT00027 10853 0.0014 (4/2937) 0 * Os_TE_78364 Os_TE_78364 Chr8 9953856 9953855 - RIRE3A_LTR 10580 0.0014 (4/2937) 0 * Os_TE_78365 Os_TE_78302 Chr8 9929535 9929534 - SZ-COM 1308 0.0007 (1/1462) 0 * * Os_TE_78282 Chr8 9923145 9923144 - ORSgTEMT02400246 177 0.0013 (4/2996) 0 * Os_TE_78281 Os_TE_78281 Chr8 9923144 9923145 - TYPEM 227 0.0013 (4/2995) 0 * Os_TE_78282 Os_TE_78167 Chr8 9875898 9875899 + RIRE3_LTR 12054 0.0151 (45/2987) 0 * * Os_TE_78142 Chr8 9853187 9853188 + ORSiTERTOOT00028 8600 0.0004 (1/2670) 0 * Os_TE_78141 Os_TE_78141 Chr8 9853183 9853182 - TRUNCATOR2_LTR 2904 0.0004 (1/2673) 0 * Os_TE_78142 Os_TE_78116 Chr8 9840944 9840945 - TRUNCATOR2_LTR 2904 0.0422 (126/2989) 0 * Os_TE_78115 Os_TE_78115 Chr8 9840940 9840939 + ORSiCMCM00100019 2717 0.0402 (120/2982) 0 * Os_TE_78116 Os_TE_78113 Chr8 9840259 9840260 + COPIA2-LTR_OS 6433 0.0010 (3/2963) 0 * Os_TE_78112 Os_TE_78112 Chr8 9840255 9840254 - COPIA2-LTR_OS 6433 0.0010 (3/2961) 0 * Os_TE_78113 Os_TE_78111 Chr8 9840194 9840193 + OSMAR1 5265 0.0054 (16/2971) 0 * * Os_TE_78094 Chr8 9836809 9836810 - MuDR2_OS 6770 0.0731 (216/2955) 0 * Os_TE_78093 Os_TE_78093 Chr8 9836801 9836800 + MuDR2_OS 6770 0.0774 (230/2971) 0 * Os_TE_78094 Os_TE_78073 Chr8 9824730 9824731 + ORSgTEMT02400034 225 0.0846 (253/2992) 0 * * Os_TE_78070 Chr8 9824369 9824220 - ORSgTEMT00500110 151 0.5716 (1712/2995) 1 Intact Os_TE_78069 Os_TE_78069 Chr8 9824219 9824367 + ORSgTEMT00500260 149 0.5731 (1716/2994) 1 Intact Os_TE_78070 Os_TE_78067 Chr8 9824161 9824162 + RIREX_LTR 8828 0.2345 (698/2976) 0 * Os_TE_78066 Os_TE_78066 Chr8 9824157 9824156 - RIREX_LTR 8828 0.2351 (700/2978) 0 * Os_TE_78067 Os_TE_78057 Chr8 9822291 9822292 + RETROSAT2LTR 12796 0.0797 (135/1694) 0 * * Os_TE_78053 Chr8 9819939 9819643 + ORSgTEMT01900006 305 0.5657 (1644/2906) 1 Intact Os_TE_78051 Os_TE_78051 Chr8 9819642 9819936 - TYPEH 309 0.5567 (1595/2865) 1 Intact Os_TE_78053 Os_TE_78050 Chr8 9819297 9803777 + SPMLIKE 10989 0.1089 (309/2838) 1 Intact Os_TE_78043 Os_TE_78043 Chr8 9803777 9819297 - ORSgTETN00200001 10994 0.1023 (287/2806) 1 Intact Os_TE_78050 Os_TE_78042 Chr8 9803724 9803725 + DS-RICE4N 715 0.1290 (350/2713) 0 * Os_TE_78041 Os_TE_78041 Chr8 9803717 9803716 - DS-RICE2N 613 0.1351 (364/2694) 0 * Os_TE_78042 Os_TE_78039 Chr8 9803358 9803359 + RIREX_LTR 8828 0.0003 (1/2869) 0 * Os_TE_78038 Os_TE_78038 Chr8 9803354 9803353 - RIREX_LTR 8828 0.0007 (1/1415) 0 * Os_TE_78039 Os_TE_78031 Chr8 9801035 9801036 - RPO_OS 1983 0.4074 (1073/2634) 0 * * Os_TE_78028 Chr8 9800912 9800913 - ENSPM4_OS 11610 0.0976 (256/2623) 0 * * Os_TE_78021 Chr8 9800041 9800321 + ORSgTEMT05200253 282 0.6146 (1722/2802) 1 Intact * Os_TE_78003 Chr8 9785475 9785476 - STOWAWAY51_OS 246 0.0003 (1/2995) 0 * * Os_TE_77999 Chr8 9779644 9779645 + ORSgTEMT01601591 242 0.0024 (7/2969) 0 * * Os_TE_77983 Chr8 9770699 9770700 - INDITTO 263 0.0117 (35/2982) 0 * Os_TE_77982 Os_TE_77982 Chr8 9770697 9770696 + INDITTO 263 0.0117 (35/2984) 0 * Os_TE_77983 Os_TE_77979 Chr8 9768713 9768712 + COPI2_LTR 4733 0.0003 (1/2988) 0 * * Os_TE_77978 Chr8 9768547 9768548 + F770 284 0.0435 (129/2965) 0 * Os_TE_77977 Os_TE_77977 Chr8 9768545 9768544 - F770 284 0.0436 (129/2960) 0 * Os_TE_77978 Os_TE_77976 Chr8 9767436 9767437 - TELIA 141 0.0009 (2/2317) 0 * Os_TE_77975 Os_TE_77975 Chr8 9767428 9767427 + TELIA 141 0.0009 (2/2314) 0 * Os_TE_77976 Os_TE_77969 Chr8 9763364 9763365 + STOWAWAY50_OS 174 0.1521 (453/2978) 0 * * Os_TE_77967 Chr8 9762815 9762814 + TESS 244 0.5448 (1277/2344) 0 * * Os_TE_77964 Chr8 9761958 9762195 + STOWAWAY44_OS 240 0.7890 (2232/2829) 1 Intact * Os_TE_77956 Chr8 9759325 9759324 + SEVERIN-2 1952 0.0007 (2/2980) 0 * * Os_TE_77949 Chr8 9756032 9756031 - OsSN3 183 0.1641 (455/2772) 0 * * Os_TE_77901 Chr8 9737423 9737424 + RIREX_LTR 8828 0.3884 (934/2405) 0 * * Os_TE_77899 Chr8 9734164 9734011 - ORSgTEMT01700029 143 0.8143 (2372/2913) 1 Intact Os_TE_77896 Os_TE_77896 Chr8 9734010 9734159 + ORSgTEMT01701311 142 0.8740 (2345/2683) 1 Intact Os_TE_77899 Os_TE_77880 Chr8 9718416 9717455 - COPIA2-LTR_OS 6433 0.1106 (270/2441) 1 Solo_LTR Os_TE_77878 Os_TE_77878 Chr8 9717455 9718416 + COPIA2-LTR_OS 6433 0.1172 (264/2253) 1 Solo_LTR Os_TE_77880 Os_TE_77877 Chr8 9717253 9717254 - SZ-40LTR 2465 0.0790 (195/2469) 0 * Os_TE_77876 Os_TE_77876 Chr8 9717249 9717248 + SZ-40LTR 2465 0.0550 (133/2418) 0 * Os_TE_77877 Os_TE_77804 Chr8 9684972 9684973 - ORSiTERT00100062 5674 0.0034 (8/2375) 0 * * Os_TE_77801 Chr8 9684678 9684679 + INDITTO 263 0.1246 (319/2560) 0 * Os_TE_77800 Os_TE_77800 Chr8 9684676 9684675 - INDITTO 263 0.1261 (323/2562) 0 * Os_TE_77801 Os_TE_77690 Chr8 9644940 9645346 - WANDERER 232 0.8662 (2550/2944) 1 Intact * Os_TE_77687 Chr8 9643349 9643107 - ORSgTEMT01400019 216 0.4311 (1280/2969) 1 Intact Os_TE_77684 Os_TE_77684 Chr8 9643104 9643313 - ORSgTEMT01400015 213 0.4267 (1239/2904) 1 Intact Os_TE_77687 Os_TE_77682 Chr8 9642814 9642469 - OLO24C 356 0.8086 (1614/1996) 1 Intact Os_TE_77679 Os_TE_77679 Chr8 9642472 9642806 + OLO24 345 0.5427 (1556/2867) 1 Intact Os_TE_77682 Os_TE_77660 Chr8 9628100 9628101 - CASTAWAY 364 0.1109 (328/2958) 0 * * Os_TE_77657 Chr8 9627582 9627583 - ORSgTEMT02400136 222 0.8788 (2545/2896) 0 * * Os_TE_77651 Chr8 9626114 9625798 + MDM2 312 0.8805 (2344/2662) 1 Intact Os_TE_77650 Os_TE_77650 Chr8 9625798 9626114 + MDM2 312 0.8866 (2471/2787) 1 Intact Os_TE_77651 Os_TE_77648 Chr8 9625759 9625758 - OSTE21 1271 0.0014 (4/2768) 0 * * Os_TE_77637 Chr8 9617010 9617011 + SZ-62LTR 3649 0.0199 (55/2765) 0 * * Os_TE_77633 Chr8 9616662 9616663 - SEVERIN-2 1952 0.0404 (114/2824) 0 * * Os_TE_77620 Chr8 9614954 9608530 + RIREX_LTR 8828 0.0876 (261/2979) 1 Intact Os_TE_77617 Os_TE_77617 Chr8 9608530 9614954 - RIREX_LTR 8828 0.0889 (264/2969) 1 Intact Os_TE_77620 Os_TE_77601 Chr8 9600267 9600268 + RETROSAT2LTR 12796 0.0083 (3/360) 0 * * Os_TE_77593 Chr8 9595815 9595816 + RIRE2_LTR 11306 0.2299 (80/348) 0 * Os_TE_77592 Os_TE_77592 Chr8 9595811 9595810 - RIRE2_LTR 11306 0.2386 (84/352) 0 * Os_TE_77593 Os_TE_77588 Chr8 9593945 9593944 - ORSgTEMT01601834 234 0.8765 (2292/2615) 0 * * Os_TE_77569 Chr8 9581556 9581555 + ORSgTEMT00500498 155 0.7596 (986/1298) 0 * * Os_TE_77566 Chr8 9580376 9574221 + RIREX_LTR 8828 0.7736 (270/349) 1 Intact Os_TE_77561 Os_TE_77561 Chr8 9574221 9580376 - RIREX_LTR 8828 0.7829 (274/350) 1 Intact Os_TE_77566 Os_TE_77560 Chr8 9574190 9574191 - ORSgTETN00200001 10994 0.1012 (176/1739) 0 * * Os_TE_77558 Chr8 9573941 9562833 - RIREX_LTR 8828 0.0955 (265/2776) 1 Intact Os_TE_77554 Os_TE_77554 Chr8 9562833 9573941 + RIREX_LTR 8828 0.0984 (260/2643) 1 Intact Os_TE_77558 Os_TE_77543 Chr8 9559632 9559399 - ORSgTEMT01602100 238 0.1115 (280/2511) 1 Intact Os_TE_77540 Os_TE_77540 Chr8 9559394 9559632 - ORSgTEMT01602100 238 0.1224 (268/2190) 1 Intact Os_TE_77543 Os_TE_77538 Chr8 9559358 9559357 + ORSgTEMT01601934 207 0.8817 (1952/2214) 0 * * Os_TE_77536 Chr8 9558893 9558892 + AMYLTP 383 0.0018 (5/2734) 0 * * Os_TE_77528 Chr8 9555826 9555827 - CACTA-H 1152 0.0252 (69/2735) 0 * Os_TE_77527 Os_TE_77527 Chr8 9555824 9555823 + CACTA-H 1152 0.0270 (73/2700) 0 * Os_TE_77528 Os_TE_77524 Chr8 9555750 9555751 + ORSgTEMT00600287 363 0.8718 (2292/2629) 0 * * Os_TE_77505 Chr8 9545929 9545930 - SEVERIN-2 1952 0.0052 (15/2875) 0 * * Os_TE_77503 Chr8 9545366 9545365 + TNR3 1536 0.8777 (2512/2862) 0 * * Os_TE_77500 Chr8 9542775 9542774 - CACTA-Q 2268 0.8774 (2470/2815) 0 * * Os_TE_77493 Chr8 9539421 9539422 + TRUNCATOR 2918 0.0010 (3/2877) 0 * * Os_TE_77479 Chr8 9536612 9536611 + ORSgTETNOOT02316 263 0.0758 (216/2850) 0 * * Os_TE_77450 Chr8 9532928 9532927 + ORSgTEMT01601525 239 0.0750 (212/2825) 0 * * Os_TE_77449 Chr8 9532923 9532924 - ORSgTEMT01601178 230 0.0730 (206/2823) 0 * Os_TE_77448 Os_TE_77448 Chr8 9532922 9532921 + ORSgTEMT01601426 233 0.0730 (205/2810) 0 * Os_TE_77449 Os_TE_77436 Chr8 9532401 9532400 - COPIA2-LTR_OS 6433 0.0710 (202/2845) 0 * * Os_TE_77363 Chr8 9506291 9506292 + RIREX_LTR 8828 0.0117 (35/2990) 0 * Os_TE_77362 Os_TE_77362 Chr8 9506287 9506286 - RIREX_LTR 8828 0.0114 (34/2989) 0 * Os_TE_77363 Os_TE_77348 Chr8 9502557 9502558 + COPI2_LTR 4733 0.0003 (1/2982) 0 * Os_TE_77347 Os_TE_77347 Chr8 9502553 9502552 - COPI2_LTR 4733 0.0003 (1/2977) 0 * Os_TE_77348 Os_TE_77346 Chr8 9502247 9502248 - ORSgTETN00200001 10994 0.1754 (519/2959) 0 * Os_TE_77345 Os_TE_77345 Chr8 9502246 9502245 + SPMLIKE 10989 0.1736 (513/2955) 0 * Os_TE_77346 Os_TE_77324 Chr8 9491992 9488850 - MuDR-5_OS 17471 0.0924 (276/2988) 1 Intact Os_TE_77322 Os_TE_77322 Chr8 9488843 9491992 + MuDR-5_OS 17471 0.0919 (274/2981) 1 Intact Os_TE_77324 Os_TE_77302 Chr8 9477081 9477220 + ORSgTETNOOT00686 140 0.0959 (274/2858) 1 Intact * Os_TE_77301 Chr8 9476798 9475429 - CLOUD-5 1611 0.8996 (2624/2917) 1 Intact * Os_TE_77299 Chr8 9474815 9463514 - RIRE2_LTR 11306 0.0966 (280/2899) 1 Intact * Os_TE_77283 Chr8 9458678 9455715 + ORSiTERTOOT00028 8600 0.0904 (267/2954) 1 Intact Os_TE_77280 Os_TE_77280 Chr8 9455715 9458678 - TRUNCATOR2_LTR 2904 0.0930 (278/2990) 1 Intact Os_TE_77283 Os_TE_77273 Chr8 9454005 9454004 + RETROSAT4_LTR 13504 0.0662 (194/2929) 0 * * Os_TE_77258 Chr8 9447087 9447086 + TWIFBIG 3567 0.0439 (42/956) 0 * * Os_TE_77215 Chr8 9433171 9432981 + EXPLORER 210 0.0935 (277/2963) 1 Intact * Os_TE_77173 Chr8 9409246 9409034 + F569 228 0.0969 (270/2785) 1 Intact * Os_TE_77167 Chr8 9405540 9403833 + MERMITEB 1610 0.1095 (280/2557) 1 Intact * Os_TE_77162 Chr8 9403516 9403668 - COWARD-3 221 0.1027 (281/2737) 1 Intact * Os_TE_77157 Chr8 9394977 9394978 + TWIF 586 0.0007 (2/2806) 0 * * Os_TE_77138 Chr8 9389127 9389128 + ORSiCMCM00100019 2717 0.0081 (21/2595) 0 * * Os_TE_77135 Chr8 9388531 9388532 - MuDR2_OS 6770 0.0924 (275/2977) 0 * Os_TE_77134 Os_TE_77134 Chr8 9388522 9388521 + MuDR2_OS 6770 0.0815 (240/2946) 0 * Os_TE_77135 Os_TE_77130 Chr8 9385090 9385091 - INDITTO 263 0.0017 (5/2991) 0 * Os_TE_77129 Os_TE_77129 Chr8 9385088 9385087 + INDITTO 263 0.0013 (4/2990) 0 * Os_TE_77130 Os_TE_77120 Chr8 9382146 9382147 - INDITTO 263 0.0023 (7/2994) 0 * Os_TE_77119 Os_TE_77119 Chr8 9382144 9382143 + INDITTO 263 0.0023 (7/2991) 0 * Os_TE_77120 Os_TE_77117 Chr8 9380588 9380589 - SZ-5LTR 1223 0.0809 (239/2954) 0 * * Os_TE_77116 Chr8 9380085 9380086 - INDITTO 263 0.0010 (3/2971) 0 * Os_TE_77115 Os_TE_77115 Chr8 9380083 9380082 + INDITTO 263 0.0010 (3/2970) 0 * Os_TE_77116 Os_TE_77077 Chr8 9357496 9375006 + ORSiTERTOOT00291 11421 0.6682 (1045/1564) 1 Intact * Os_TE_77068 Chr8 9352313 9352314 - EnSpm-16_OS 13336 0.0020 (5/2514) 0 * * Os_TE_77066 Chr8 9350872 9350873 - SZ-9LTR 965 0.0215 (58/2703) 0 * Os_TE_77065 Os_TE_77065 Chr8 9350868 9350867 - SZ-9LTR 965 0.0276 (80/2897) 0 * Os_TE_77066 Os_TE_77061 Chr8 9349013 9349012 - OSTE33 1012 0.0756 (217/2872) 0 * * Os_TE_77050 Chr8 9347125 9347124 + ORSgTEMT02000034 224 0.0017 (5/2976) 0 * * Os_TE_77020 Chr8 9340113 9340114 - ORSgTETN00200001 10994 0.0007 (2/2976) 0 * Os_TE_77019 Os_TE_77019 Chr8 9340111 9340110 + SPMLIKE 10989 0.0007 (2/2980) 0 * Os_TE_77020 Os_TE_77018 Chr8 9338168 9338167 - ORSgTEMT00900075 250 0.0898 (268/2986) 0 * Os_TE_77017 Os_TE_77017 Chr8 9338164 9338165 - ORSgTEMT00900563 246 0.0954 (285/2988) 0 * Os_TE_77018 Os_TE_77016 Chr8 9336233 9336234 - OSLINE1-4 4779 0.0948 (282/2974) 0 * * Os_TE_76970 Chr8 9320384 9320385 + COPI2_LTR 4733 0.0003 (1/2958) 0 * Os_TE_76969 Os_TE_76969 Chr8 9320380 9320379 - COPI2_LTR 4733 0.0003 (1/2984) 0 * Os_TE_76970 Os_TE_76827 Chr8 9232087 9232086 - RIREX_LTR 8828 0.2639 (785/2975) 0 * * Os_TE_76826 Chr8 9232020 9232021 - COPIA2-LTR_OS 6433 0.0020 (6/2951) 0 * Os_TE_76825 Os_TE_76825 Chr8 9232016 9232015 + COPIA2-LTR_OS 6433 0.0021 (6/2874) 0 * Os_TE_76826 Os_TE_76810 Chr8 9222035 9222034 - STOWAWAY13_OS 251 0.3315 (956/2884) 0 * * Os_TE_76809 Chr8 9221561 9221562 + SPMLIKE 10989 0.0003 (1/2963) 0 * * Os_TE_76806 Chr8 9221023 9221024 + ORSgTETNOOT00908 242 0.3355 (993/2960) 0 * Os_TE_76805 Os_TE_76805 Chr8 9221021 9221020 + ORSgTETNOOT01522 239 0.3133 (904/2885) 0 * Os_TE_76806 Os_TE_76799 Chr8 9220173 9219537 + SZ-19LTR 1513 0.6846 (2051/2996) 1 Intact Os_TE_76797 Os_TE_76797 Chr8 9219537 9220173 - SZ-19LTR 1513 0.6774 (2018/2979) 1 Intact Os_TE_76799 Os_TE_76796 Chr8 9219004 9219005 - SZ-28LTR 262 0.3400 (1010/2971) 0 * * Os_TE_76785 Chr8 9212175 9212176 - ORSgTETN00200001 10994 0.1289 (380/2947) 0 * Os_TE_76784 Os_TE_76784 Chr8 9212173 9212172 + SPMLIKE 10989 0.1295 (384/2965) 0 * Os_TE_76785 Os_TE_76783 Chr8 9211676 9211398 + BUHUI 375 0.6788 (2012/2964) 1 Intact Os_TE_76781 Os_TE_76781 Chr8 9211398 9211676 - BUHUI 375 0.6838 (2044/2989) 1 Intact Os_TE_76783 Os_TE_76777 Chr8 9210585 9210586 - RETRO1_LTR 8314 0.0007 (2/2759) 0 * * Os_TE_76772 Chr8 9207771 9207770 - ORSgTERT00201357 5378 0.0003 (1/2968) 0 * * Os_TE_76771 Chr8 9207166 9207167 + COPI2_LTR 4733 0.0003 (1/2968) 0 * * Os_TE_76749 Chr8 9198917 9198918 - SC-3_LTR 5748 0.0013 (4/2988) 0 * Os_TE_76748 Os_TE_76748 Chr8 9198913 9198912 + ORSiTERTOOT00296 5553 0.0013 (4/2992) 0 * Os_TE_76749 Os_TE_76746 Chr8 9198151 9198152 + ORSiTERTOOT00296 5553 0.0003 (1/2990) 0 * Os_TE_76745 Os_TE_76745 Chr8 9198147 9198146 - SC-3_LTR 5748 0.0003 (1/2988) 0 * Os_TE_76746 Os_TE_76744 Chr8 9197689 9197500 + EXPLORER 210 0.4376 (1309/2991) 1 Intact * Os_TE_76732 Chr8 9191556 9191557 + TWIFBIG 3567 0.0618 (180/2914) 0 * Os_TE_76731 Os_TE_76731 Chr8 9191549 9191548 - ORSiTETNOOT00200 3563 0.0596 (173/2903) 0 * Os_TE_76732 Os_TE_76730 Chr8 9191108 9190916 - ORSgTEMT02000034 224 0.4390 (1309/2982) 1 Intact Os_TE_76727 Os_TE_76727 Chr8 9190877 9191070 - ORSgTEMT02000046 197 0.4391 (1308/2979) 1 Intact Os_TE_76730 Os_TE_76725 Chr8 9190398 9189028 + Cassandra_OS-LTR 764 0.0803 (240/2989) 1 Intact Os_TE_76720 Os_TE_76720 Chr8 9189028 9189743 - Cassandra_OS-LTR 764 0.0949 (242/2551) 1 Intact Os_TE_76725 Os_TE_76704 Chr8 9181267 9181266 - RETROFIT_LTR 4866 0.0004 (1/2772) 0 * * Os_TE_76699 Chr8 9179490 9179489 - STOWAWAY47_OS 148 0.5741 (1692/2947) 0 * * Os_TE_76698 Chr8 9179225 9179072 + STOWAWAY50_OS 174 0.4345 (1290/2969) 1 Intact * Os_TE_76684 Chr8 9173753 9173752 - ORSgTEMT00500675 140 0.3836 (1096/2857) 0 * * Os_TE_76681 Chr8 9171784 9171783 + ORSgTEMT01601122 212 0.6555 (1878/2865) 0 * * Os_TE_76675 Chr8 9171394 9171395 + SINE9_OS 293 0.2720 (739/2717) 0 * Os_TE_76674 Os_TE_76674 Chr8 9171379 9171378 - SINE9_OS 293 0.2885 (776/2690) 0 * Os_TE_76675 Os_TE_76656 Chr8 9161438 9164766 + GYPSY-A_LTR 8951 0.4896 (1081/2208) 1 Solo_LTR * Os_TE_76655 Chr8 9161273 9160711 + SZ-33LTR 575 0.4913 (1096/2231) 1 Intact * Os_TE_76616 Chr8 9138570 9138277 - SINE9_OS 293 0.5625 (1112/1977) 1 Intact * Os_TE_76613 Chr8 9137022 9137023 - ORSiTETNOOT00200 3563 0.1112 (302/2716) 0 * Os_TE_76612 Os_TE_76612 Chr8 9137015 9137014 + TWIFBIG 3567 0.1567 (426/2719) 0 * Os_TE_76613 Os_TE_76597 Chr8 9123377 9123376 + ORSgTETNOOT00032 218 0.0252 (70/2781) 0 * * Os_TE_76595 Chr8 9121197 9121198 - TRUNCATOR2_LTR 2904 0.0237 (71/2998) 0 * * Os_TE_76593 Chr8 9120661 9120660 + MDR2 6967 0.0003 (1/2994) 0 * * Os_TE_76588 Chr8 9114264 9114263 + EnSpm-N1_OS 4256 0.0733 (219/2988) 0 * Os_TE_76587 Os_TE_76587 Chr8 9114260 9114261 - EnSpm-N1_OS 4256 0.0726 (217/2991) 0 * Os_TE_76588 Os_TE_76579 Chr8 9107189 9107188 + ORSgTEMT00100272 356 0.0247 (69/2797) 0 * * Os_TE_76578 Chr8 9107154 9107153 - ORSgTEMT01400014 209 0.1347 (378/2807) 0 * Os_TE_76577 Os_TE_76577 Chr8 9107148 9107149 - ORSgTEMT01400015 213 0.1974 (591/2994) 0 * Os_TE_76578 Os_TE_76576 Chr8 9106462 9106463 - RIRE2_LTR 11306 0.0017 (5/2995) 0 * * Os_TE_76574 Chr8 9105647 9105646 - COPI2_LTR 4733 0.0003 (1/2996) 0 * * Os_TE_76564 Chr8 9098122 9098121 - ORSgTEMT01800062 435 0.1237 (368/2976) 0 * * Os_TE_76556 Chr8 9095745 9095744 - ORSgTEMT01602413 239 0.0241 (71/2947) 0 * Os_TE_76555 Os_TE_76555 Chr8 9095742 9095743 + ORSgTEMT01601525 239 0.0243 (72/2966) 0 * Os_TE_76556 Os_TE_76553 Chr8 9095007 9095006 + ORSgTETNOOT00908 242 0.0235 (70/2983) 0 * Os_TE_76552 Os_TE_76552 Chr8 9094991 9094992 + ORSgTETNOOT01219 231 0.0238 (71/2979) 0 * Os_TE_76553 Os_TE_76526 Chr8 9090349 9090350 + ORSiTERTOOT00174 2237 0.0004 (1/2646) 0 * * Os_TE_76525 Chr8 9090248 9090247 - ORSgTEMT01602592 236 0.0496 (131/2639) 0 * * Os_TE_76524 Chr8 9090245 9090246 + ORSgTEMT01602161 238 0.0620 (171/2758) 0 * Os_TE_76523 Os_TE_76523 Chr8 9090242 9090241 + ORSgTEMT01600523 230 0.0506 (138/2728) 0 * Os_TE_76524 Os_TE_76511 Chr8 9081505 9081506 + ORSgTETNOOT00908 242 0.0078 (20/2567) 0 * * Os_TE_76500 Chr8 9077065 9077066 - RETROSAT3_LTR 11537 0.0007 (2/2830) 0 * Os_TE_76499 Os_TE_76499 Chr8 9077061 9077060 + RETROSAT3_LTR 11537 0.0007 (2/2823) 0 * Os_TE_76500 Os_TE_76492 Chr8 9072413 9072412 + STOWAWAY41_OS 264 0.0235 (70/2985) 0 * * Os_TE_76487 Chr8 9071283 9071284 + ORSgTEMT01601591 242 0.0003 (1/2999) 0 * * Os_TE_76486 Chr8 9068739 9068740 - AMYLTP 383 0.1537 (460/2993) 0 * Os_TE_76485 Os_TE_76485 Chr8 9068731 9068730 + AMYLTP 383 0.1584 (464/2929) 0 * Os_TE_76486 Os_TE_76484 Chr8 9067155 9067154 + NDNA1TNA_OS 334 0.1895 (566/2987) 0 * Os_TE_76483 Os_TE_76483 Chr8 9067154 9067155 + ORSgTEMT00101674 340 0.1847 (552/2988) 0 * Os_TE_76484 Os_TE_76479 Chr8 9066185 9066186 - COPIA2-LTR_OS 6433 0.0030 (9/2991) 0 * Os_TE_76478 Os_TE_76478 Chr8 9066181 9066180 + COPIA2-LTR_OS 6433 0.0030 (9/2978) 0 * Os_TE_76479 Os_TE_76477 Chr8 9064915 9064914 + STOWAWAY50_OS 174 0.0231 (69/2990) 0 * * Os_TE_76461 Chr8 9061771 9061772 + CASLET 354 0.4326 (1222/2825) 0 * Os_TE_76460 Os_TE_76460 Chr8 9061769 9061768 + ORSgTEMT00600576 351 0.4653 (1375/2955) 0 * Os_TE_76461 Os_TE_76458 Chr8 9061608 9061455 - ORSgTEMT01700507 154 0.5292 (1552/2933) 1 Intact Os_TE_76457 Os_TE_76457 Chr8 9061455 9061608 + ORSgTEMT01701591 154 0.5277 (1564/2964) 1 Intact Os_TE_76458 Os_TE_76455 Chr8 9060590 9060589 - ORSgTETNOOT01760 137 0.0087 (26/2973) 0 * * Os_TE_76427 Chr8 9046092 9046091 + ORSgTETN00200005 1121 0.3617 (881/2436) 0 * Os_TE_76426 Os_TE_76426 Chr8 9046091 9046092 + CACTA-H 1152 0.3593 (872/2427) 0 * Os_TE_76427 Os_TE_76423 Chr8 9044889 9044888 - ORSgTEMT01602152 236 0.1876 (550/2931) 0 * * Os_TE_76417 Chr8 9044013 9044014 - MuDR2_OS 6770 0.1601 (471/2942) 0 * * Os_TE_76400 Chr8 9034077 9034078 + BUHUI 375 0.0008 (2/2465) 0 * Os_TE_76399 Os_TE_76399 Chr8 9034075 9034074 - BUHUI 375 0.0008 (2/2462) 0 * Os_TE_76400 Os_TE_76397 Chr8 9031705 9031706 - ORSgTEMT01602082 215 0.0008 (2/2442) 0 * * Os_TE_76392 Chr8 9028695 9028696 + GYPSY-A_LTR 8951 0.0008 (2/2454) 0 * * Os_TE_76388 Chr8 9023407 9023408 + COPI2_LTR 4733 0.0008 (2/2462) 0 * Os_TE_76387 Os_TE_76387 Chr8 9023406 9023405 - COPI2_LTR 4733 0.0008 (2/2464) 0 * Os_TE_76388 Os_TE_76382 Chr8 9022433 9022434 - ORSgTEMT00502257 142 0.0004 (1/2784) 0 * * Os_TE_76373 Chr8 9018396 9018395 - COPI2_LTR 4733 0.0008 (2/2449) 0 * * Os_TE_76368 Chr8 9016017 9016018 + SZ-36LTR 5825 0.0007 (2/2796) 0 * * Os_TE_76348 Chr8 9010231 9010439 + ORSiTEMT06000009 191 0.4605 (1153/2504) 1 Intact * Os_TE_76340 Chr8 9009301 9009072 + Cassandra_OS-LTR 764 0.4809 (1234/2566) 1 Solo_LTR * Os_TE_76333 Chr8 9008379 9008597 - ORSgTEMT02400246 177 0.4748 (1233/2597) 1 Intact * Os_TE_76329 Chr8 9007954 9007953 + DS-RICE3N 525 0.1176 (302/2568) 0 * * Os_TE_76327 Chr8 9005935 9005934 + OSMU5 4881 0.0039 (10/2561) 0 * * Os_TE_76325 Chr8 9005761 9005760 - SZ-30_LTR 6377 0.5368 (1400/2608) 0 * * Os_TE_76324 Chr8 9005546 9005547 + COPIA2-LTR_OS 6433 0.0038 (10/2666) 0 * Os_TE_76323 Os_TE_76323 Chr8 9005542 9005541 - COPIA2-LTR_OS 6433 0.0038 (10/2656) 0 * Os_TE_76324 Os_TE_76315 Chr8 9001717 9001716 - TYPEM 227 0.2587 (735/2841) 0 * Os_TE_76314 Os_TE_76314 Chr8 9001716 9001717 - ORSgTEMT02400246 177 0.2548 (724/2842) 0 * Os_TE_76315 Os_TE_76292 Chr8 8995650 8995649 - ORSgTETN00200001 10994 0.0004 (1/2629) 0 * * Os_TE_76281 Chr8 8992592 8992591 - TRUNCATOR 2918 0.1201 (337/2807) 0 * Os_TE_76280 Os_TE_76280 Chr8 8992591 8992592 + TRUNCATOR 2918 0.1291 (354/2741) 0 * Os_TE_76281 Os_TE_76247 Chr8 8986514 8986513 + SPMLIKE 10989 0.1241 (333/2684) 0 * * Os_TE_76237 Chr8 8985766 8985767 - COPI2_LTR 4733 0.0004 (1/2680) 0 * Os_TE_76236 Os_TE_76236 Chr8 8985762 8985761 + COPI2_LTR 4733 0.0004 (1/2688) 0 * Os_TE_76237 Os_TE_76235 Chr8 8984559 8984560 - SZ-22_LTR 4403 0.0018 (5/2784) 0 * Os_TE_76234 Os_TE_76234 Chr8 8984555 8984554 + ORSiTERTOOT00226 792 0.0018 (5/2784) 0 * Os_TE_76235 Os_TE_76231 Chr8 8982324 8982325 + TRUNCATOR 2918 0.0275 (78/2841) 0 * * Os_TE_76224 Chr8 8980871 8980870 - ORSgTEMT00900760 239 0.0007 (2/2906) 0 * * Os_TE_76217 Chr8 8978587 8978588 - RETROSAT2LTR 12796 0.1072 (302/2817) 0 * Os_TE_76216 Os_TE_76216 Chr8 8978585 8978584 + RETROSAT2LTR 12796 0.1007 (282/2800) 0 * Os_TE_76217 Os_TE_76162 Chr8 8958809 8958808 + RIREX_LTR 8828 0.0597 (169/2833) 0 * * Os_TE_76156 Chr8 8955699 8955698 - COPI2_LTR 4733 0.0160 (45/2807) 0 * * Os_TE_76155 Chr8 8955515 8955516 + SZ-62LTR 3649 0.0233 (64/2742) 0 * * Os_TE_76150 Chr8 8955161 8955162 + ORSgTEMT00700017 386 0.0004 (1/2804) 0 * * Os_TE_76139 Chr8 8952976 8952977 - ORSgTERT00201216 11284 0.0014 (4/2816) 0 * * Os_TE_76132 Chr8 8950108 8950109 + F770 284 0.0990 (270/2726) 0 * Os_TE_76131 Os_TE_76131 Chr8 8950106 8950105 - F770 284 0.0996 (269/2702) 0 * Os_TE_76132 Os_TE_76118 Chr8 8943011 8943010 + RETRO1_LTR 8314 0.0323 (88/2726) 0 * * Os_TE_76115 Chr8 8941065 8941066 - INDITTO 263 0.0230 (65/2832) 0 * * Os_TE_76112 Chr8 8940275 8940276 + HARB-1_OS 5166 0.0004 (1/2851) 0 * * Os_TE_76110 Chr8 8939318 8939319 + ORSiTERTOOT00226 792 0.0059 (17/2875) 0 * * Os_TE_76109 Chr8 8939194 8939195 - MPING 430 0.0004 (1/2812) 0 * Os_TE_76108 Os_TE_76108 Chr8 8939192 8939191 + MPING 430 0.0004 (1/2816) 0 * Os_TE_76109 Os_TE_76102 Chr8 8936606 8936605 + RIREX_LTR 8828 0.0813 (166/2042) 0 * * Os_TE_76089 Chr8 8934380 8934381 - HARB-1_OS 5166 0.0005 (1/2048) 0 * Os_TE_76088 Os_TE_76088 Chr8 8934378 8934377 + HARB-1_OS 5166 0.0005 (1/2046) 0 * Os_TE_76089 Os_TE_76067 Chr8 8927167 8927168 - STOWAWAY51_OS 246 0.0004 (1/2811) 0 * * Os_TE_76061 Chr8 8923619 8923620 + COPIA2-LTR_OS 6433 0.0004 (1/2817) 0 * Os_TE_76060 Os_TE_76060 Chr8 8923615 8923614 - COPIA2-LTR_OS 6433 0.0004 (1/2817) 0 * Os_TE_76061 Os_TE_76039 Chr8 8909763 8909764 - RIREX_LTR 8828 0.0948 (266/2807) 0 * Os_TE_76038 Os_TE_76038 Chr8 8909759 8909758 + RIREX_LTR 8828 0.1026 (265/2584) 0 * Os_TE_76039 Os_TE_76029 Chr8 8908906 8908907 + INDITTO 263 0.2277 (647/2841) 0 * Os_TE_76028 Os_TE_76028 Chr8 8908904 8908903 - INDITTO 263 0.2261 (641/2835) 0 * Os_TE_76029 Os_TE_76027 Chr8 8908165 8908166 - RIRE2_LTR 11306 0.0930 (259/2786) 0 * Os_TE_76026 Os_TE_76026 Chr8 8908161 8908160 - ORSgTERT00201216 11284 0.0972 (270/2777) 0 * Os_TE_76027 Os_TE_76023 Chr8 8905290 8905291 + F770 284 0.0945 (269/2847) 0 * Os_TE_76022 Os_TE_76022 Chr8 8905288 8905287 - F770 284 0.0933 (266/2850) 0 * Os_TE_76023 Os_TE_76021 Chr8 8904927 8904928 + ORSiTERTOOT00226 792 0.0007 (2/2803) 0 * Os_TE_76020 Os_TE_76020 Chr8 8904923 8904922 - SZ-22_LTR 4403 0.0012 (2/1612) 0 * Os_TE_76021 Os_TE_76019 Chr8 8904735 8904736 + OLO24 345 0.0355 (98/2759) 0 * Os_TE_76018 Os_TE_76018 Chr8 8904733 8904732 - OLO24 345 0.0357 (100/2805) 0 * Os_TE_76019 Os_TE_76017 Chr8 8904323 8900884 - SEVERIN-2 1952 0.2825 (788/2789) 1 Intact * Os_TE_76015 Chr8 8900635 8900636 - HARB-1_OS 5166 0.0989 (276/2792) 0 * Os_TE_76014 Os_TE_76014 Chr8 8900633 8900632 + HARB-1_OS 5166 0.0997 (279/2797) 0 * Os_TE_76015 Os_TE_76013 Chr8 8900162 8898807 + OSTE33 1012 0.2793 (791/2832) 1 Intact Os_TE_76010 Os_TE_76010 Chr8 8898807 8900162 - OSTE33 1012 0.2783 (790/2839) 1 Intact Os_TE_76013 Os_TE_76009 Chr8 8898729 8898728 - F770 284 0.0014 (4/2829) 0 * * Os_TE_75977 Chr8 8884655 8884654 - SC-3_LTR 5748 0.0561 (168/2992) 0 * * Os_TE_75976 Chr8 8884564 8884565 + SC-8_LTR 4951 0.0003 (1/2998) 0 * Os_TE_75975 Os_TE_75975 Chr8 8884560 8884559 - SC-8_LTR 4951 0.0003 (1/2978) 0 * Os_TE_75976 Os_TE_75964 Chr8 8878327 8878328 - COPI2_LTR 4733 0.0003 (1/2989) 0 * * Os_TE_75919 Chr8 8861693 8861694 - MERMITE18E 1528 0.0588 (175/2978) 0 * Os_TE_75918 Os_TE_75918 Chr8 8861689 8861688 + MERMITE18E 1528 0.0492 (141/2866) 0 * Os_TE_75919 Os_TE_75912 Chr8 8857291 8857290 - ORSgTEMT00901723 248 0.0004 (1/2541) 0 * * Os_TE_75892 Chr8 8851097 8851328 + ORSgTEMT01601426 233 0.5870 (1683/2867) 1 Intact * Os_TE_75890 Chr8 8851035 8851036 + GYPSY-B_LTR 7068 0.0587 (174/2962) 0 * Os_TE_75889 Os_TE_75889 Chr8 8851031 8851030 - GYPSY-B_LTR 7068 0.0603 (175/2900) 0 * Os_TE_75890 Os_TE_75888 Chr8 8850686 8850685 - F569 228 0.4245 (1265/2980) 0 * Os_TE_75887 Os_TE_75887 Chr8 8850685 8850686 + F569 228 0.4052 (1175/2900) 0 * Os_TE_75888 Os_TE_75885 Chr8 8850145 8850146 - RETRO1_LTR 8314 0.0007 (1/1413) 0 * Os_TE_75884 Os_TE_75884 Chr8 8850141 8850140 + RETRO1_LTR 8314 0.0003 (1/2968) 0 * Os_TE_75885 Os_TE_75882 Chr8 8849347 8849121 + STOWAWAY44_OS 240 0.5267 (1428/2711) 1 Intact Os_TE_75880 Os_TE_75880 Chr8 8849121 8849345 - STOWAWAY44_OS 240 0.4920 (1379/2803) 1 Intact Os_TE_75882 Os_TE_75878 Chr8 8848851 8848852 - SINE9_OS 293 0.1359 (281/2067) -1 * * Os_TE_75877 Chr8 8847188 8847189 - STOWAWAY17_OS 259 0.4232 (1245/2942) 0 * Os_TE_75876 Os_TE_75876 Chr8 8847185 8847184 + ORSgTETNOOT00792 273 0.4149 (1207/2909) 0 * Os_TE_75877 Os_TE_75872 Chr8 8846361 8846360 + SINE03_OS 360 0.0003 (1/2979) 0 * * Os_TE_75871 Chr8 8846216 8846217 - SZ-22_LTR 4403 0.0007 (2/2737) 0 * Os_TE_75870 Os_TE_75870 Chr8 8846212 8846211 + ORSiTERTOOT00226 792 0.0007 (2/2992) 0 * Os_TE_75871 Os_TE_75867 Chr8 8844756 8844755 - TREP215 239 0.4156 (1216/2926) 0 * Os_TE_75866 Os_TE_75866 Chr8 8844753 8844754 + TREP215 239 0.4216 (1247/2958) 0 * Os_TE_75867 Os_TE_75862 Chr8 8844091 8844092 - RETRO2_LTR 12874 0.0817 (128/1566) 0 * * Os_TE_75818 Chr8 8816781 8816782 + MERMITE18E 1528 0.5858 (1611/2750) 0 * * Os_TE_75814 Chr8 8816671 8816670 - TNR2A 152 0.0003 (1/2963) 0 * * Os_TE_75808 Chr8 8815719 8815720 + ORSgTETNOOT02577 232 0.2031 (603/2969) 0 * * Os_TE_75800 Chr8 8811197 8811051 + ORSgTEMT00500070 150 0.5737 (1704/2970) 1 Intact * Os_TE_75797 Chr8 8810346 8810347 + ORSgTETNOOT00670 249 0.1145 (337/2943) 0 * * Os_TE_75793 Chr8 8808642 8808641 - ORSgTEMT00101173 343 0.1761 (419/2379) 0 * * Os_TE_75788 Chr8 8806980 8806979 - SZ-COM 1308 0.0013 (2/1494) 0 * * Os_TE_75783 Chr8 8803826 8803827 + ORSiTERTOOT00296 5553 0.0648 (98/1512) 0 * Os_TE_75782 Os_TE_75782 Chr8 8803822 8803821 - SC-3_LTR 5748 0.0634 (96/1515) 0 * Os_TE_75783 Os_TE_75779 Chr8 8802039 8800960 - MIDWAY 985 0.4950 (1475/2980) 1 Intact * Os_TE_75771 Chr8 8799597 8799598 - CACTA-I 1124 0.5150 (1509/2930) 0 * Os_TE_75770 Os_TE_75770 Chr8 8799595 8799594 + CACTA-H 1152 0.5268 (1573/2986) 0 * Os_TE_75771 Os_TE_75768 Chr8 8799310 8799311 - SZ-9LTR 965 0.0245 (72/2935) 0 * * Os_TE_75765 Chr8 8798897 8798896 + COPI2_LTR 4733 0.0010 (3/2981) 0 * * Os_TE_75764 Chr8 8798535 8798536 - TEMPINDAS 4259 0.0024 (7/2954) 0 * * Os_TE_75756 Chr8 8793523 8793524 - SC-3_LTR 5748 0.0003 (1/2933) 0 * Os_TE_75755 Os_TE_75755 Chr8 8793519 8793518 - SC-3_LTR 5748 0.0003 (1/2991) 0 * Os_TE_75756 Os_TE_75730 Chr8 8780264 8780265 - RIREX_LTR 8828 0.0058 (17/2922) 0 * Os_TE_75729 Os_TE_75729 Chr8 8780260 8780259 + RIREX_LTR 8828 0.0058 (17/2930) 0 * Os_TE_75730 Os_TE_75722 Chr8 8777903 8777461 + RIREX_LTR 8828 0.1455 (425/2920) 1 Solo_LTR Os_TE_75719 Os_TE_75719 Chr8 8777461 8777903 - RIREX_LTR 8828 0.1425 (416/2920) 1 Solo_LTR Os_TE_75722 Os_TE_75717 Chr8 8777292 8777293 + SPMLIKE 10989 0.0003 (1/2907) 0 * Os_TE_75716 Os_TE_75716 Chr8 8777290 8777289 - ORSgTETN00200001 10994 0.0003 (1/2932) 0 * Os_TE_75717 Os_TE_75714 Chr8 8776586 8776587 + ENSPM4_OS 11610 0.0024 (7/2967) 0 * * Os_TE_75713 Chr8 8776482 8776481 - RETROSAT2LTRA 3112 0.0003 (1/2960) 0 * * Os_TE_75712 Chr8 8776376 8776375 - TYPEM 227 0.0007 (2/2969) 0 * Os_TE_75711 Os_TE_75711 Chr8 8776375 8776376 - ORSgTEMT02400246 177 0.0010 (3/2965) 0 * Os_TE_75712 Os_TE_75710 Chr8 8776343 8776344 - ORSgTEMT00901345 248 0.0003 (1/2933) 0 * * Os_TE_75685 Chr8 8771722 8771723 - OSTE24 683 0.0298 (89/2988) 0 * Os_TE_75684 Os_TE_75684 Chr8 8771712 8771711 - OSTE24 683 0.0255 (76/2979) 0 * Os_TE_75685 Os_TE_75647 Chr8 8760608 8760607 - RETRO2_LTR 12874 0.0004 (1/2781) 0 * * Os_TE_75646 Chr8 8758728 8758729 - ORSgTERT00201216 11284 0.0004 (1/2829) 0 * Os_TE_75645 Os_TE_75645 Chr8 8758724 8758723 - RIRE2_LTR 11306 0.0004 (1/2820) 0 * Os_TE_75646 Os_TE_75643 Chr8 8758635 8758634 + RETRO2_LTR 12874 0.0025 (7/2845) 0 * * Os_TE_75621 Chr8 8729418 8757814 + RETRO2_LTR 12874 0.1384 (405/2927) 1 Intact * Os_TE_75590 Chr8 8720754 8720755 - ORSiTERT00100062 5674 0.1705 (507/2974) 0 * Os_TE_75589 Os_TE_75589 Chr8 8720750 8720749 + OSTONOR1_LTR 6440 0.1600 (471/2944) 0 * Os_TE_75590 Os_TE_75587 Chr8 8720385 8720384 - ENSPM4_OS 11610 0.0023 (7/2997) 0 * * Os_TE_75581 Chr8 8719454 8719455 - COPIA2-LTR_OS 6433 0.0043 (12/2823) 0 * * Os_TE_75573 Chr8 8718666 8718665 - ORSgTEMT02400148 214 0.0004 (1/2732) 0 * Os_TE_75572 Os_TE_75572 Chr8 8718665 8718666 - TYPEM 227 0.0004 (1/2617) 0 * Os_TE_75573 Os_TE_75558 Chr8 8715520 8715521 + SZ-67LTR 1540 0.3749 (1106/2950) 0 * Os_TE_75557 Os_TE_75557 Chr8 8715516 8715515 - SZ-67LTR 1540 0.3923 (1176/2998) 0 * Os_TE_75558 Os_TE_75553 Chr8 8714265 8714266 + RIRE2_LTR 11306 0.0114 (32/2797) 0 * Os_TE_75552 Os_TE_75552 Chr8 8714261 8714260 - RIRE2_LTR 11306 0.0116 (33/2839) 0 * Os_TE_75553 Os_TE_75520 Chr8 8707234 8707235 + ORSgTEMT00600124 361 0.0017 (5/2978) 0 * Os_TE_75519 Os_TE_75519 Chr8 8707232 8707231 + CASTAWAY 364 0.0020 (6/2979) 0 * Os_TE_75520 Os_TE_75512 Chr8 8701670 8701671 - SZ-5LTR 1223 0.0335 (100/2983) 0 * * Os_TE_75511 Chr8 8701347 8688478 - RETRO1_LTR 8314 0.2367 (676/2856) 1 Intact Os_TE_75508 Os_TE_75508 Chr8 8688478 8701347 + RETRO1_LTR 8314 0.2329 (670/2877) 1 Intact Os_TE_75511 Os_TE_75507 Chr8 8688464 8688465 + CRM-LTR_OS 7749 0.0219 (64/2926) 0 * * Os_TE_75505 Chr8 8687347 8687348 - RETROSAT2LTR 12796 0.0292 (82/2811) 0 * * Os_TE_75495 Chr8 8683413 8683412 - ORSgTEMT02400246 177 0.1690 (505/2988) 0 * Os_TE_75494 Os_TE_75494 Chr8 8683412 8683413 - TYPEM 227 0.1683 (503/2988) 0 * Os_TE_75495 Os_TE_75474 Chr8 8673635 8673636 - SZ-48LTR 3632 0.0521 (151/2899) 0 * Os_TE_75473 Os_TE_75473 Chr8 8673631 8673630 + SZ-48LTR 3632 0.0474 (136/2872) 0 * Os_TE_75474 Os_TE_75469 Chr8 8673241 8673242 + RIREX_LTR 8828 0.0024 (7/2943) 0 * * Os_TE_75444 Chr8 8662205 8662206 + SPMLIKE 10989 0.0027 (8/2988) 0 * Os_TE_75443 Os_TE_75443 Chr8 8662203 8662202 - ORSgTETN00200001 10994 0.0030 (9/2992) 0 * Os_TE_75444 Os_TE_75424 Chr8 8654530 8653463 + CACTA-B 1103 0.4641 (737/1588) 1 Intact * Os_TE_75391 Chr8 8638616 8638617 - COPIA2-LTR_OS 6433 0.0007 (2/2874) 0 * Os_TE_75390 Os_TE_75390 Chr8 8638612 8638611 + COPIA2-LTR_OS 6433 0.0007 (2/2870) 0 * Os_TE_75391 Os_TE_75377 Chr8 8633646 8633645 - SZ-22_LTR 4403 0.0014 (4/2955) 0 * * Os_TE_75371 Chr8 8631251 8631252 - SZ-22_LTR 4403 0.0003 (1/2991) 0 * Os_TE_75370 Os_TE_75370 Chr8 8631247 8631246 + ORSiTERTOOT00226 792 0.0003 (1/2990) 0 * Os_TE_75371 Os_TE_75363 Chr8 8629409 8629408 - COPIA2-LTR_OS 6433 0.0003 (1/2986) 0 * * Os_TE_75318 Chr8 8609356 8609357 - RETRO2_LTR 12874 0.0236 (69/2922) 0 * Os_TE_75317 Os_TE_75317 Chr8 8609352 8609351 + RETRO2_LTR 12874 0.0186 (54/2911) 0 * Os_TE_75318 Os_TE_75307 Chr8 8607480 8607479 - ORSgTEMT01601432 239 0.0017 (5/2971) 0 * Os_TE_75306 Os_TE_75306 Chr8 8607477 8607478 + ORSgTEMT01602181 239 0.0020 (6/2970) 0 * Os_TE_75307 Os_TE_75300 Chr8 8606513 8606512 + STOWAWAY51_OS 246 0.0003 (1/2967) 0 * Os_TE_75299 Os_TE_75299 Chr8 8606507 8606508 - STOWAWAY51_OS 246 0.0003 (1/2964) 0 * Os_TE_75300 Os_TE_75298 Chr8 8606293 8604679 - ENSPM4_OS 11610 0.3746 (1117/2982) 1 Intact * Os_TE_75297 Chr8 8604134 8604135 + RIREX_LTR 8828 0.0007 (2/2989) 0 * Os_TE_75296 Os_TE_75296 Chr8 8604130 8604129 - RIREX_LTR 8828 0.0007 (2/2989) 0 * Os_TE_75297 Os_TE_75295 Chr8 8603995 8603031 - SZ-9LTR 965 0.3754 (1121/2986) 1 Intact * Os_TE_75288 Chr8 8597598 8598562 + SZ-9LTR 965 0.3750 (1118/2981) 1 Intact * Os_TE_75286 Chr8 8595796 8595797 + COPIA2-LTR_OS 6433 0.0003 (1/2971) 0 * Os_TE_75285 Os_TE_75285 Chr8 8595792 8595791 - COPIA2-LTR_OS 6433 0.0003 (1/2974) 0 * Os_TE_75286 Os_TE_75278 Chr8 8590952 8590953 + ORSiTERTOOT00296 5553 0.0003 (1/2991) 0 * Os_TE_75277 Os_TE_75277 Chr8 8590948 8590947 - SC-3_LTR 5748 0.0003 (1/2991) 0 * Os_TE_75278 Os_TE_75268 Chr8 8588177 8588176 - ORSiTERTOOT00086 525 0.0003 (1/2971) 0 * * Os_TE_75258 Chr8 8581667 8581668 + ORSiTERTOOT00296 5553 0.0023 (7/2979) 0 * Os_TE_75257 Os_TE_75257 Chr8 8581663 8581662 - SC-3_LTR 5748 0.0023 (7/2986) 0 * Os_TE_75258 Os_TE_75256 Chr8 8581591 8581590 + DITAILA 257 0.0244 (73/2996) 0 * Os_TE_75255 Os_TE_75255 Chr8 8581587 8581588 - DITAILA 257 0.0257 (77/2995) 0 * Os_TE_75256 Os_TE_75249 Chr8 8579578 8579577 + TREP215 239 0.0243 (72/2963) 0 * Os_TE_75248 Os_TE_75248 Chr8 8579567 8579568 + ORSgTEMT01601599 239 0.0241 (71/2950) 0 * Os_TE_75249 Os_TE_75231 Chr8 8572529 8572530 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_75230 Os_TE_75230 Chr8 8572525 8572524 + COPIA2-LTR_OS 6433 0.0003 (1/2928) 0 * Os_TE_75231 Os_TE_75229 Chr8 8572473 8572474 - COPIA2-LTR_OS 6433 0.0818 (245/2996) 0 * Os_TE_75228 Os_TE_75228 Chr8 8572469 8572468 + COPIA2-LTR_OS 6433 0.0789 (236/2990) 0 * Os_TE_75229 Os_TE_75224 Chr8 8569029 8569028 - ORSgTERT00201216 11284 0.0003 (1/2992) 0 * * Os_TE_75148 Chr8 8530081 8530080 + ORSgTEMT00901844 250 0.0017 (5/2908) 0 * Os_TE_75147 Os_TE_75147 Chr8 8530077 8530078 - ORSgTEMT00900099 250 0.0014 (4/2929) 0 * Os_TE_75148 Os_TE_75141 Chr8 8529556 8529557 + DASIA-2 1198 0.0003 (1/2980) 0 * * Os_TE_75115 Chr8 8525299 8525300 - COPIA2-LTR_OS 6433 0.0007 (2/2702) 0 * Os_TE_75114 Os_TE_75114 Chr8 8525295 8525294 + COPIA2-LTR_OS 6433 0.0007 (2/2711) 0 * Os_TE_75115 Os_TE_75113 Chr8 8525103 8525104 + RETRO2_LTR 12874 0.0052 (14/2676) 0 * * Os_TE_75098 Chr8 8519563 8519564 - UNIQUE 158 0.0262 (77/2942) 0 * * Os_TE_75096 Chr8 8519471 8519470 - STOWAWAY36_OS 268 0.0275 (81/2949) 0 * * Os_TE_75094 Chr8 8519146 8519147 + TRUNCATOR2_LTR 2904 0.2503 (738/2949) 0 * Os_TE_75093 Os_TE_75093 Chr8 8519142 8519141 - TRUNCATOR2_LTR 2904 0.3550 (748/2107) 0 * Os_TE_75094 Os_TE_75085 Chr8 8510782 8510570 + ORSgTEMT01601122 212 0.2691 (799/2969) 1 Intact Os_TE_75084 Os_TE_75084 Chr8 8510542 8510782 + ORSgTEMT01601122 212 0.2689 (800/2975) 1 Intact Os_TE_75085 Os_TE_75076 Chr8 8505388 8505389 + FOCUS 257 0.0144 (43/2987) 0 * Os_TE_75075 Os_TE_75075 Chr8 8505386 8505385 - FOCUS 257 0.0144 (43/2991) 0 * Os_TE_75076 Os_TE_75059 Chr8 8500193 8500194 - MuDR3_OS 8604 0.0047 (13/2757) 0 * Os_TE_75058 Os_TE_75058 Chr8 8500185 8500184 - MuDR3_OS 8604 0.0254 (71/2796) 0 * Os_TE_75059 Os_TE_75052 Chr8 8492896 8492897 - TNR12 528 0.0003 (1/2982) 0 * * Os_TE_75051 Chr8 8492597 8492598 - SC-3_LTR 5748 0.0013 (4/2989) 0 * Os_TE_75050 Os_TE_75050 Chr8 8492593 8492592 + ORSiTERTOOT00296 5553 0.0013 (4/2989) 0 * Os_TE_75051 Os_TE_75048 Chr8 8492388 8492389 - SC-3_LTR 5748 0.0164 (49/2986) 0 * Os_TE_75047 Os_TE_75047 Chr8 8492384 8492383 + ORSiTERTOOT00296 5553 0.0164 (49/2986) 0 * Os_TE_75048 Os_TE_75027 Chr8 8485281 8485282 - OSTE33 1012 0.0003 (1/2876) 0 * * Os_TE_75008 Chr8 8479130 8479131 - CLOUD 734 0.0017 (5/2964) 0 * * Os_TE_74975 Chr8 8467444 8467445 - ORSgTEMT01601493 303 0.0003 (1/2951) 0 * * Os_TE_74972 Chr8 8467084 8467085 + CACTA-B 1103 0.0007 (2/2967) 0 * * Os_TE_74969 Chr8 8465497 8465498 - COPIA2-LTR_OS 6433 0.0014 (4/2846) 0 * * Os_TE_74965 Chr8 8464730 8464729 - ORSgTEMT01602413 239 0.0767 (94/1225) 0 * * Os_TE_74955 Chr8 8458550 8464384 - RIRE5-LTR_OS 6427 0.2227 (449/2016) 1 Intact * Os_TE_74953 Chr8 8458401 8458400 + ORSgTEMT01700715 134 0.0356 (75/2106) 0 * * Os_TE_74939 Chr8 8451446 8456305 - BAJIELTR 4500 0.8638 (2449/2835) 1 Intact * Os_TE_74922 Chr8 8444146 8444147 + COPI2_LTR 4733 0.0014 (4/2926) 0 * Os_TE_74921 Os_TE_74921 Chr8 8444142 8444141 - COPI2_LTR 4733 0.0017 (5/2932) 0 * Os_TE_74922 Os_TE_74919 Chr8 8443954 8443953 + STOWAWAY1_OS 149 0.0265 (78/2942) 0 * Os_TE_74918 Os_TE_74918 Chr8 8443953 8443954 - ORSgTEMT01700029 143 0.0242 (71/2932) 0 * Os_TE_74919 Os_TE_74884 Chr8 8431529 8431530 - NDNA1TNA_OS 334 0.0074 (22/2987) 0 * Os_TE_74883 Os_TE_74883 Chr8 8431527 8431526 + NDNA1TNA_OS 334 0.0074 (22/2978) 0 * Os_TE_74884 Os_TE_74881 Chr8 8431000 8431001 - INDITTO 263 0.1814 (542/2988) 0 * Os_TE_74880 Os_TE_74880 Chr8 8430998 8430997 + INDITTO 263 0.1835 (542/2953) 0 * Os_TE_74881 Os_TE_74879 Chr8 8430867 8430868 - ORSgTETN00200001 10994 0.0003 (1/2975) 0 * * Os_TE_74857 Chr8 8426051 8426052 - STOWAWAY45_OS 266 0.0003 (1/2922) 0 * * Os_TE_74854 Chr8 8423849 8423619 - ORSgTEMT01600223 220 0.1503 (439/2921) 1 Intact Os_TE_74852 Os_TE_74852 Chr8 8423619 8423856 - ORSgTEMT01601208 238 0.1467 (435/2966) 1 Intact Os_TE_74854 Os_TE_74728 Chr8 8349359 8349360 + CLOUD-7 495 0.6438 (1706/2650) 0 * * Os_TE_74727 Chr8 8349207 8349206 - STOWAWAY11_OS 292 0.0003 (1/2905) 0 * Os_TE_74726 Os_TE_74726 Chr8 8349198 8349199 - RETROSAT3_LTR 11537 0.0023 (4/1731) 0 * Os_TE_74727 Os_TE_74725 Chr8 8349177 8349176 + CACTA-B 1103 0.4317 (1229/2847) 0 * * Os_TE_74720 Chr8 8346973 8346750 - ORSgTETNOOT00355 222 0.3428 (1018/2970) 1 Intact Os_TE_74719 Os_TE_74719 Chr8 8346750 8346973 + ORSgTETNOOT00355 222 0.6215 (821/1321) 1 Intact Os_TE_74720 Os_TE_74690 Chr8 8333960 8333961 - TRUNCATOR2_LTR 2904 0.0498 (147/2953) 0 * * Os_TE_74673 Chr8 8330508 8330509 + INDITTO 263 0.0044 (13/2986) 0 * * Os_TE_74667 Chr8 8326735 8326736 + RIRE2_LTR 11306 0.0184 (54/2931) 0 * Os_TE_74666 Os_TE_74666 Chr8 8326731 8326730 - RIRE2_LTR 11306 0.0215 (63/2924) 0 * Os_TE_74667 Os_TE_74665 Chr8 8326392 8326393 + CASTAWAY 364 0.0225 (66/2937) 0 * * Os_TE_74663 Chr8 8326289 8326290 - ORSgTETN00200001 10994 0.0193 (56/2902) 0 * Os_TE_74662 Os_TE_74662 Chr8 8326287 8326286 + SPMLIKE 10989 0.0083 (24/2880) 0 * Os_TE_74663 Os_TE_74643 Chr8 8323025 8323024 - ORSgTEMT01601768 238 0.0017 (5/2996) 0 * Os_TE_74642 Os_TE_74642 Chr8 8323023 8323024 + ORSgTEMT01602181 239 0.0017 (5/2935) 0 * Os_TE_74643 Os_TE_74641 Chr8 8322941 8322942 + COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_74640 Os_TE_74640 Chr8 8322937 8322936 - COPIA2-LTR_OS 6433 0.0003 (1/2890) 0 * Os_TE_74641 Os_TE_74639 Chr8 8322683 8322684 + SETARIA2 1142 0.0003 (1/2991) 0 * Os_TE_74638 Os_TE_74638 Chr8 8322676 8322675 + SETARIA1 1293 0.0003 (1/2991) 0 * Os_TE_74639 Os_TE_74635 Chr8 8321067 8321068 - RIRE2_LTR 11306 0.0003 (1/2982) 0 * Os_TE_74634 Os_TE_74634 Chr8 8321063 8321062 - ORSgTERT00201216 11284 0.0003 (1/2990) 0 * Os_TE_74635 Os_TE_74624 Chr8 8319096 8319235 + ORSgTEMT00500201 140 0.1554 (465/2992) 1 Intact * Os_TE_74623 Chr8 8317866 8317865 - ORSgTEMT01702346 154 0.8486 (2460/2899) 0.06 * * Os_TE_74622 Chr8 8317773 8317627 + TNR2A 152 0.1517 (386/2544) 1 Intact Os_TE_74621 Os_TE_74621 Chr8 8317627 8317771 - TNR2A 152 0.1535 (380/2475) 1 Intact Os_TE_74622 Os_TE_74620 Chr8 8317597 8317596 - TNR2A 152 0.0009 (1/1144) 0 * * Os_TE_74619 Chr8 8317548 8317301 + ORSgTEMT00901798 232 0.1429 (371/2597) 1 Intact * Os_TE_74610 Chr8 8316102 8316103 + CACTA-K 1131 0.8502 (2486/2924) 0 * Os_TE_74609 Os_TE_74609 Chr8 8316100 8316099 - CACTA-J 1159 0.8436 (2357/2794) 0 * Os_TE_74610 Os_TE_74605 Chr8 8315460 8315201 - STOWAWAY13_OS 251 0.1250 (369/2953) 1 Intact * Os_TE_74599 Chr8 8314433 8314186 - ORSgTEMT00900099 250 0.1291 (375/2904) 1 Intact Os_TE_74597 Os_TE_74597 Chr8 8314184 8314433 + ORSgTEMT00901798 232 0.1281 (372/2905) 1 Intact Os_TE_74599 Os_TE_74593 Chr8 8312382 8312381 - ORSgTEMT01700794 153 0.0303 (90/2966) 0 * * Os_TE_74592 Chr8 8312142 8312141 + STOWAWAY1_OS 149 0.8752 (2503/2860) 0 * * Os_TE_74579 Chr8 8307458 8307457 + RETRO1_LTR 8314 0.0004 (1/2802) 0 * * Os_TE_74578 Chr8 8307445 8307444 + NDNA1TNA_OS 334 0.0279 (80/2869) 0 * * Os_TE_74551 Chr8 8295691 8295692 - SZ-9LTR 965 0.0056 (5/886) 0 * * Os_TE_74547 Chr8 8294467 8294466 + STOWAWAY1_OS 149 0.0542 (52/960) 0 * * Os_TE_74546 Chr8 8294466 8294467 + ORSgTEMT01701591 154 0.6665 (1737/2606) 0 * * Os_TE_74511 Chr8 8287248 8287249 + TELIA 141 0.0007 (2/2981) 0 * * Os_TE_74475 Chr8 8271127 8271126 - MuDR4_OS 7610 0.0017 (5/2989) 0 * * Os_TE_74465 Chr8 8267696 8267878 - OsSN3 183 0.2854 (851/2982) 1 Intact * Os_TE_74463 Chr8 8267095 8265605 + SZ-19LTR 1513 0.3044 (890/2924) 1 Intact Os_TE_74461 Os_TE_74461 Chr8 8265605 8267095 - SZ-19LTR 1513 0.2945 (873/2964) 1 Intact Os_TE_74463 Os_TE_74458 Chr8 8264710 8264709 + ORSiCMCM00100019 2717 0.0024 (7/2891) 0 * * Os_TE_74454 Chr8 8263283 8263284 - F569 228 0.0004 (1/2753) 0 * * Os_TE_74453 Chr8 8263244 8263245 + SPMLIKE 10989 0.4267 (900/2109) 0 * Os_TE_74452 Os_TE_74452 Chr8 8263242 8263241 - ORSgTETN00200001 10994 0.5075 (1381/2721) 0 * Os_TE_74453 Os_TE_74451 Chr8 8263215 8262280 - COPIA2-LTR_OS 6433 0.3717 (894/2405) 1 Solo_LTR Os_TE_74450 Os_TE_74450 Chr8 8262280 8263216 + COPIA2-LTR_OS 6433 0.3381 (891/2635) 1 Solo_LTR Os_TE_74451 Os_TE_74448 Chr8 8261333 8261334 - OSTE14 885 0.0060 (18/2983) 0 * * Os_TE_74447 Chr8 8261308 8261309 - RIRE5-LTR_OS 6427 0.0020 (6/2969) 0 * Os_TE_74446 Os_TE_74446 Chr8 8261302 8261301 + RIRE5-LTR_OS 6427 0.0014 (4/2949) 0 * Os_TE_74447 Os_TE_74445 Chr8 8259876 8259877 - ORSgTEMT00600304 361 0.0233 (59/2529) 0 * Os_TE_74444 Os_TE_74444 Chr8 8259873 8259872 - CASTAWAY 364 0.0221 (61/2764) 0 * Os_TE_74445 Os_TE_74440 Chr8 8257398 8257399 + NDNA1TNA_OS 334 0.0080 (23/2875) 0 * * Os_TE_74433 Chr8 8256959 8256960 + STOLA 369 0.0319 (92/2888) 0 * Os_TE_74432 Os_TE_74432 Chr8 8256957 8256956 + ORSgTEMT04800085 366 0.0312 (90/2888) 0 * Os_TE_74433 Os_TE_74428 Chr8 8256739 8256738 + MUDRN3_OS 903 0.0004 (1/2848) 0 * * Os_TE_74425 Chr8 8256035 8256034 - DNAUN1_OS 408 0.8362 (2486/2973) 0 * * Os_TE_74419 Chr8 8254073 8254279 - ORSgTEMT01400012 212 0.6524 (717/1099) 1 Intact * Os_TE_74418 Chr8 8254025 8254026 - ORSgTEMT00500110 151 0.7643 (2212/2894) 0 * * Os_TE_74417 Chr8 8253884 8253883 + ORSgTEMT00501356 145 0.7372 (2174/2949) 0 * * Os_TE_74414 Chr8 8253647 8253853 + ORSgTEMT01400018 210 0.8980 (757/843) 1 Intact * Os_TE_74413 Chr8 8253615 8253616 - ORSgTETNOOT00544 147 0.0007 (2/2973) 0 * * Os_TE_74399 Chr8 8249298 8249297 + ORSgTERT00200063 5773 0.7397 (2091/2827) 0 * * Os_TE_74397 Chr8 8248897 8248896 + CACTA-H 1152 0.7366 (2072/2813) 0 * Os_TE_74396 Os_TE_74396 Chr8 8248895 8248896 + ORSiTEMT06800002 376 0.7487 (2154/2877) 0 * Os_TE_74397 Os_TE_74394 Chr8 8246106 8246107 - RETRO1_LTR 8314 0.0013 (1/779) 0 * Os_TE_74393 Os_TE_74393 Chr8 8246102 8246101 + RETRO1_LTR 8314 0.0013 (1/779) 0 * Os_TE_74394 Os_TE_74374 Chr8 8233979 8231715 + RPO_OS 1983 0.3288 (952/2895) 1 Intact Os_TE_74372 Os_TE_74372 Chr8 8231715 8233469 - RPO_OS 1983 0.3308 (959/2899) 1 Intact Os_TE_74374 Os_TE_74329 Chr8 8216213 8216214 - TYPEM 227 0.0004 (1/2852) 0 * * Os_TE_74326 Chr8 8214864 8215559 + BAJIELTR 4500 0.2548 (702/2755) 1 Solo_LTR * Os_TE_74323 Chr8 8213526 8213527 + STOWAWAY11_OS 292 0.7637 (2207/2890) 0 * Os_TE_74322 Os_TE_74322 Chr8 8213525 8213524 - STOWAWAY11_OS 292 0.7611 (2169/2850) 0 * Os_TE_74323 Os_TE_74320 Chr8 8213281 8213280 + ORSgTETNOOT01834 251 0.7651 (2218/2899) 0 * * Os_TE_74304 Chr8 8206821 8212899 + MERMITE18C 1473 0.2417 (696/2880) 1 Intact * Os_TE_74299 Chr8 8205993 8205992 - ORSiTERT00200154 9386 0.0010 (3/2909) 0 * * Os_TE_74298 Chr8 8205919 8194629 - RIRE2_LTR 11306 0.1116 (325/2912) 1 Intact Os_TE_74288 Os_TE_74288 Chr8 8194629 8205919 + RIRE2_LTR 11306 0.1131 (328/2900) 1 Intact Os_TE_74298 Os_TE_74286 Chr8 8194599 8194598 + RETRO2A_LTR 12895 0.0612 (136/2222) 0 * * Os_TE_74285 Chr8 8194552 8194553 + SZ-58LTR 114 0.7488 (2233/2982) 0 * * Os_TE_74278 Chr8 8193961 8193960 + ORSgTEMT01601445 230 0.0233 (69/2959) 0 * Os_TE_74277 Os_TE_74277 Chr8 8193958 8193959 - ORSgTEMT01600768 234 0.0279 (83/2980) 0 * Os_TE_74278 Os_TE_74266 Chr8 8192781 8192782 + GYPSY-B_LTR 7068 0.7663 (2223/2901) 0 * * Os_TE_74234 Chr8 8177650 8177771 - ORSgTEMT00501165 134 0.2393 (702/2933) 1 Intact * Os_TE_74231 Chr8 8167053 8167052 + MUDRN5_OS 374 0.0012 (1/827) 0 * * Os_TE_74219 Chr8 8159208 8159209 + ORSgTETNOOT00908 242 0.0019 (5/2635) 0 * * Os_TE_74217 Chr8 8158659 8158658 - MUDRN1_OS 764 0.0083 (22/2644) 0 * * Os_TE_74200 Chr8 8151136 8151137 - RIREX_LTR 8828 0.0010 (3/2958) 0 * Os_TE_74199 Os_TE_74199 Chr8 8151132 8151131 + RIREX_LTR 8828 0.0010 (3/2976) 0 * Os_TE_74200 Os_TE_74192 Chr8 8149784 8149783 - DS-RICE4N 715 0.0030 (9/2987) 0 * * Os_TE_74130 Chr8 8116370 8116371 - HARB-1_OS 5166 0.0011 (3/2812) 0 * * Os_TE_74129 Chr8 8116199 8116200 + Cassandra_OS-LTR 764 0.0003 (1/2892) 0 * * Os_TE_74128 Chr8 8115495 8115496 - MUDRN1_OS 764 0.0561 (167/2979) 0 * * Os_TE_74127 Chr8 8115236 8115237 - SC-3_LTR 5748 0.0044 (13/2978) 0 * Os_TE_74126 Os_TE_74126 Chr8 8115232 8115231 + ORSiTERTOOT00296 5553 0.0044 (13/2980) 0 * Os_TE_74127 Os_TE_74123 Chr8 8114065 8114066 - SC-3_LTR 5748 0.0003 (1/2983) 0 * Os_TE_74122 Os_TE_74122 Chr8 8114061 8114060 + ORSiTERTOOT00296 5553 0.0003 (1/2987) 0 * Os_TE_74123 Os_TE_74121 Chr8 8113064 8113065 + ORSiTERTOOT00296 5553 0.0003 (1/2989) 0 * Os_TE_74120 Os_TE_74120 Chr8 8113060 8113059 - SC-3_LTR 5748 0.0003 (1/2984) 0 * Os_TE_74121 Os_TE_74118 Chr8 8112887 8112886 - ORSiTETNOOT00134 607 0.0003 (1/2989) 0 * * Os_TE_74114 Chr8 8110527 8110528 + ORSgTETNOOT00908 242 0.0205 (61/2974) 0 * * Os_TE_74101 Chr8 8104744 8104745 - SZ-38 8643 0.0003 (1/2953) 0 * * Os_TE_74081 Chr8 8102654 8091353 - ORSgTERT00201216 11284 0.1417 (421/2971) 1 Intact Os_TE_74063 Os_TE_74063 Chr8 8091353 8102654 - RIRE2_LTR 11306 0.1410 (413/2929) 1 Intact Os_TE_74081 Os_TE_74038 Chr8 8071315 8071314 - ORSgTERT00201216 11284 0.0003 (1/2964) 0 * * Os_TE_73944 Chr8 8041953 8041954 + MUDRN2_OS 756 0.0021 (6/2920) 0 * Os_TE_73943 Os_TE_73943 Chr8 8041945 8041944 - MUDRN3_OS 903 0.0021 (6/2918) 0 * Os_TE_73944 Os_TE_73896 Chr8 8027381 8027382 - F569 228 0.0021 (6/2889) 0 * Os_TE_73895 Os_TE_73895 Chr8 8027379 8027378 + F569 228 0.0021 (6/2895) 0 * Os_TE_73896 Os_TE_73868 Chr8 8011489 8011490 + ORSgTEMT00600272 361 0.0699 (209/2988) 0 * Os_TE_73867 Os_TE_73867 Chr8 8011487 8011486 - ORSgTEMT00600524 364 0.0706 (211/2990) 0 * Os_TE_73868 Os_TE_73847 Chr8 8000802 8000803 - ORSgTETN00200001 10994 0.0086 (25/2922) 0 * Os_TE_73846 Os_TE_73846 Chr8 8000800 8000799 + SPMLIKE 10989 0.0078 (23/2946) 0 * Os_TE_73847 Os_TE_73845 Chr8 8000729 8000730 - TRUNCATOR2_LTR 2904 0.0003 (1/2923) 0 * Os_TE_73844 Os_TE_73844 Chr8 8000725 8000724 + TRUNCATOR2_LTR 2904 0.0003 (1/2920) 0 * Os_TE_73845 Os_TE_73843 Chr8 7999973 7999974 - RIREX_LTR 8828 0.0088 (26/2938) 0 * * Os_TE_73838 Chr8 7995878 7995877 + TRUNCATOR 2918 0.0512 (152/2970) 0 * Os_TE_73837 Os_TE_73837 Chr8 7995877 7995878 - TRUNCATOR 2918 0.0494 (147/2974) 0 * Os_TE_73838 Os_TE_73822 Chr8 7988202 7988203 - MuDR3_OS 8604 0.4585 (1078/2351) 0 * Os_TE_73821 Os_TE_73821 Chr8 7988193 7988192 - MuDR3_OS 8604 0.5669 (1626/2868) 0 * Os_TE_73822 Os_TE_73810 Chr8 7982421 7982420 + COPI2_LTR 4733 0.0003 (1/2990) 0 * * Os_TE_73787 Chr8 7974022 7974023 + ORSgTEMT01700591 151 0.0079 (18/2268) 0 * * Os_TE_73785 Chr8 7974000 7973999 + NDNA1TNA_OS 334 0.5029 (1487/2957) 0 * Os_TE_73784 Os_TE_73784 Chr8 7973999 7974000 + ORSgTEMT00100272 356 0.4865 (1403/2884) 0 * Os_TE_73785 Os_TE_73781 Chr8 7971208 7971209 - F569 228 0.0061 (18/2969) 0 * Os_TE_73780 Os_TE_73780 Chr8 7971206 7971205 + F569 228 0.0064 (19/2971) 0 * Os_TE_73781 Os_TE_73769 Chr8 7969500 7969499 - ORSgTEMT04600020 284 0.0004 (1/2838) 0 * * Os_TE_73729 Chr8 7955767 7955766 - COPI2_LTR 4733 0.0003 (1/2997) 0 * * Os_TE_73726 Chr8 7954082 7954081 - ORSgTETNOOT01534 208 0.0094 (28/2985) 0 * * Os_TE_73725 Chr8 7954049 7954050 - ORSgTERT00201216 11284 0.1145 (342/2987) 0 * Os_TE_73724 Os_TE_73724 Chr8 7954045 7954044 - RIRE2_LTR 11306 0.1170 (349/2984) 0 * Os_TE_73725 Os_TE_73711 Chr8 7939507 7939508 - HELIA 293 0.7719 (2233/2893) 0 * * Os_TE_73708 Chr8 7938772 7938771 - STOWAWAY13_OS 251 0.0282 (83/2946) 0 * * Os_TE_73685 Chr8 7924217 7925181 - SZ-9LTR 965 0.2516 (747/2969) 1 Intact * Os_TE_73673 Chr8 7919669 7919668 + COPIA2-LTR_OS 6433 0.0003 (1/2986) 0 * * Os_TE_73671 Chr8 7917243 7917244 + ORSgTEMT01702111 154 0.7265 (2170/2987) 0 * * Os_TE_73668 Chr8 7916865 7916866 + ORSgTEMT01700789 143 0.0003 (1/2994) 0 * * Os_TE_73665 Chr8 7914909 7914910 + ORSiTERTOOT00296 5553 0.0007 (2/2987) 0 * Os_TE_73664 Os_TE_73664 Chr8 7914905 7914904 - SC-3_LTR 5748 0.0007 (2/2987) 0 * Os_TE_73665 Os_TE_73663 Chr8 7912663 7912664 - OSTE30 529 0.7248 (2147/2962) 0 * Os_TE_73662 Os_TE_73662 Chr8 7912656 7912655 + OSTE30 529 0.7238 (2151/2972) 0 * Os_TE_73663 Os_TE_73656 Chr8 7910356 7910357 + SZ-9LTR 965 0.0010 (3/2896) 0 * Os_TE_73655 Os_TE_73655 Chr8 7910352 7910351 - SZ-9LTR 965 0.0010 (3/2941) 0 * Os_TE_73656 Os_TE_73646 Chr8 7908564 7908565 - ORSgTETN00200001 10994 0.0003 (1/2985) 0 * * Os_TE_73644 Chr8 7908264 7897053 - ORSgTETN00200001 10994 0.3381 (832/2461) 1 Intact * Os_TE_73630 Chr8 7894376 7894377 + RIRE3A_LTR 10580 0.7179 (2102/2928) 0 * * Os_TE_73628 Chr8 7893807 7893808 - RIREX_LTR 8828 0.0003 (1/2964) 0 * * Os_TE_73625 Chr8 7892257 7892258 - COPI2_LTR 4733 0.0003 (1/2920) 0 * Os_TE_73624 Os_TE_73624 Chr8 7892253 7892252 + COPI2_LTR 4733 0.0004 (1/2629) 0 * Os_TE_73625 Os_TE_73591 Chr8 7882017 7882018 - ORSgTEMT01601432 239 0.4279 (1262/2949) 0 * Os_TE_73590 Os_TE_73590 Chr8 7882013 7882012 + ORSgTEMT01602181 239 0.4301 (1271/2955) 0 * Os_TE_73591 Os_TE_73566 Chr8 7876763 7876762 + ORSiTERTOOT00004 4000 0.0003 (1/2921) 0 * * Os_TE_73553 Chr8 7873249 7865164 - RIREX_LTR 8828 0.2697 (663/2458) 1 Intact Os_TE_73551 Os_TE_73551 Chr8 7865164 7873249 + RIREX_LTR 8828 0.2556 (661/2586) 1 Intact Os_TE_73553 Os_TE_73549 Chr8 7864762 7864763 - SZ-22_LTR 4403 0.0003 (1/2985) 0 * Os_TE_73548 Os_TE_73548 Chr8 7864758 7864757 + ORSiTERTOOT00034 791 0.0003 (1/2987) 0 * Os_TE_73549 Os_TE_73540 Chr8 7861546 7861545 - RETROSAT2LTRA 3112 0.0007 (2/2988) 0 * * Os_TE_73537 Chr8 7860267 7860268 - F770 284 0.0064 (19/2990) 0 * * Os_TE_73527 Chr8 7858925 7858924 - ORSgTETN00200001 10994 0.0087 (25/2882) 0 * * Os_TE_73506 Chr8 7851592 7851593 + ORSgTETN00200005 1121 0.0010 (3/2972) 0 * * Os_TE_73500 Chr8 7851202 7851203 - RETRO1_LTR 8314 0.0007 (2/2978) 0 * Os_TE_73499 Os_TE_73499 Chr8 7851198 7851197 + RETRO1_LTR 8314 0.0007 (2/2985) 0 * Os_TE_73500 Os_TE_73496 Chr8 7849695 7849696 - RIRE2_LTR 11306 0.0074 (22/2963) 0 * Os_TE_73495 Os_TE_73495 Chr8 7849691 7849690 - ORSgTERT00201216 11284 0.0074 (22/2967) 0 * Os_TE_73496 Os_TE_73494 Chr8 7849606 7849607 + COPIA2-LTR_OS 6433 0.0024 (7/2966) 0 * Os_TE_73493 Os_TE_73493 Chr8 7849602 7849601 - COPIA2-LTR_OS 6433 0.0024 (7/2965) 0 * Os_TE_73494 Os_TE_73478 Chr8 7834370 7834371 - RIREX_LTR 8828 0.0010 (3/2984) 0 * Os_TE_73477 Os_TE_73477 Chr8 7834366 7834365 + RIREX_LTR 8828 0.0010 (3/2978) 0 * Os_TE_73478 Os_TE_73474 Chr8 7833329 7833328 + SINE03_OS 360 0.0007 (2/2965) 0 * * Os_TE_73451 Chr8 7823755 7823754 + RIREX_LTR 8828 0.0137 (28/2051) 0 * * Os_TE_73442 Chr8 7821694 7821695 + SZ-4_LTR 5991 0.0003 (1/2971) 0 * Os_TE_73441 Os_TE_73441 Chr8 7821690 7821689 - SZ-4_LTR 5991 0.0003 (1/2969) 0 * Os_TE_73442 Os_TE_73416 Chr8 7806204 7806205 - EnSpm-10_OS 11265 0.0003 (1/2931) 0 * * Os_TE_73413 Chr8 7805564 7805565 - NDNA2TNA_OS 346 0.0213 (63/2958) 0 * Os_TE_73412 Os_TE_73412 Chr8 7805562 7805561 + NDNA2TNA_OS 346 0.0230 (68/2953) 0 * Os_TE_73413 Os_TE_73411 Chr8 7805200 7805199 - ORSgTEMT01400019 216 0.3862 (1132/2931) 0 * Os_TE_73410 Os_TE_73410 Chr8 7805197 7805198 + STOWAWAY9_OS 235 0.3586 (1012/2822) 0 * Os_TE_73411 Os_TE_73390 Chr8 7797427 7797428 + ENSPM4_OS 11610 0.0346 (82/2371) 0 * * Os_TE_73389 Chr8 7796649 7796648 + ORSgTEMT01702031 156 0.3998 (1173/2934) 0 * Os_TE_73388 Os_TE_73388 Chr8 7796646 7796647 - ORSgTEMT01700216 124 0.3980 (1167/2932) 0 * Os_TE_73389 Os_TE_73387 Chr8 7796338 7796339 + ORSgTEMT01400031 216 0.3027 (782/2583) 0 * Os_TE_73386 Os_TE_73386 Chr8 7796335 7796334 + STOWAWAY9_OS 235 0.3887 (1133/2915) 0 * Os_TE_73387 Os_TE_73381 Chr8 7795390 7795389 - ORSgTEMT01602413 239 0.3890 (1151/2959) 0 * * Os_TE_73371 Chr8 7792936 7786865 + RIREX_LTR 8828 0.2357 (596/2529) 1 Intact * Os_TE_73367 Chr8 7786462 7786463 - ORSgTETN00200001 10994 0.3868 (1136/2937) 0 * Os_TE_73366 Os_TE_73366 Chr8 7786460 7786459 + SPMLIKE 10989 0.3758 (1089/2898) 0 * Os_TE_73367 Os_TE_73363 Chr8 7785252 7785251 - RIREX_LTR 8828 0.0013 (4/2995) 0 * * Os_TE_73359 Chr8 7783220 7783219 + CLOUD-7 495 0.0434 (129/2970) 0 * * Os_TE_73356 Chr8 7783177 7783176 - ORSgTEMT02400179 221 0.0003 (1/2965) 0 * * Os_TE_73350 Chr8 7779154 7779153 + ORSiTEMT00300001 383 0.3887 (1144/2943) 0 * * Os_TE_73343 Chr8 7775670 7775671 + SZ-48LTR 3632 0.0433 (129/2981) 0 * * Os_TE_73341 Chr8 7775245 7769891 + ORSiTERTOOT00345 5324 0.5778 (1731/2996) 1 Intact * Os_TE_73333 Chr8 7768107 7768106 + ORSiTETNOOT00107 906 0.0003 (1/2983) 0 * * Os_TE_73328 Chr8 7766814 7766815 + ORSgTEMT00600124 361 0.0080 (24/2985) 0 * Os_TE_73327 Os_TE_73327 Chr8 7766811 7766810 + ORSgTEMT00600160 361 0.0084 (25/2982) 0 * Os_TE_73328 Os_TE_73310 Chr8 7755436 7755283 + ORSgTEMT01701324 144 0.4233 (1223/2889) 1 Intact Os_TE_73308 Os_TE_73308 Chr8 7755283 7755436 + ORSgTEMT01701663 106 0.4089 (1196/2925) 1 Intact Os_TE_73310 Os_TE_73302 Chr8 7752886 7752887 - RETROSAT3_LTR 11537 0.0018 (5/2761) 0 * * Os_TE_73301 Chr8 7752297 7751819 - CLOUD-3 550 0.5226 (1258/2407) 1 Intact * Os_TE_73292 Chr8 7748478 7748479 + ORSgTEMT01900027 302 0.0007 (2/2752) 0 * * Os_TE_73289 Chr8 7747257 7747499 - ORSgTEMT01602055 238 0.4838 (1431/2958) 1 Intact * Os_TE_73288 Chr8 7746821 7746822 + ORSiTERTOOT00296 5553 0.3057 (893/2921) 0 * Os_TE_73287 Os_TE_73287 Chr8 7746817 7746816 - SC-3_LTR 5748 0.3299 (987/2992) 0 * Os_TE_73288 Os_TE_73284 Chr8 7744609 7744608 + ENSPM4_OS 11610 0.0010 (3/2994) 0 * * Os_TE_73250 Chr8 7733042 7733043 - RIREX_LTR 8828 0.0021 (3/1414) 0 * * Os_TE_73229 Chr8 7726710 7726709 - CACTA-G1 797 0.0020 (3/1489) 0 * * Os_TE_73214 Chr8 7723758 7723759 - RIREX_LTR 8828 0.0007 (1/1516) 0 * Os_TE_73213 Os_TE_73213 Chr8 7723754 7723753 + RIREX_LTR 8828 0.0007 (1/1518) 0 * Os_TE_73214 Os_TE_73211 Chr8 7722431 7721554 + OSMU5 4881 0.5024 (1489/2964) 1 Intact * Os_TE_73210 Chr8 7721931 7721932 - ORSiTETNOOT00134 607 0.0070 (12/1715) 0 * Os_TE_73209 Os_TE_73209 Chr8 7721924 7721923 + TWIF 586 0.0099 (15/1514) 0 * Os_TE_73210 Os_TE_73208 Chr8 7721748 7721749 - ORSgTEMT02400179 221 0.0032 (5/1540) 0 * Os_TE_73207 Os_TE_73207 Chr8 7721747 7721746 - TYPEM 227 0.0029 (5/1710) 0 * Os_TE_73208 Os_TE_73205 Chr8 7721032 7721033 - ORSgTERT00201216 11284 0.0017 (5/2985) 0 * Os_TE_73204 Os_TE_73204 Chr8 7721028 7721027 - RIRE2_LTR 11306 0.0013 (4/2980) 0 * Os_TE_73205 Os_TE_73203 Chr8 7718682 7718683 - COPI2_LTR 4733 0.0003 (1/2964) 0 * Os_TE_73202 Os_TE_73202 Chr8 7718678 7718677 + COPI2_LTR 4733 0.0003 (1/2964) 0 * Os_TE_73203 Os_TE_73199 Chr8 7718289 7718288 + SC-8_LTR 4951 0.0027 (8/2956) 0 * * Os_TE_73184 Chr8 7713130 7713129 + ORSgTEMT01701579 154 0.0011 (3/2854) 0 * * Os_TE_73178 Chr8 7712877 7712878 + ORSiCMCM00100019 2717 0.0027 (8/2959) 0 * Os_TE_73177 Os_TE_73177 Chr8 7712873 7712872 - TRUNCATOR2_LTR 2904 0.0027 (8/2933) 0 * Os_TE_73178 Os_TE_73176 Chr8 7712594 7712595 + RETROSAT4_LTR 13504 0.0007 (2/2962) 0 * * Os_TE_73145 Chr8 7704425 7704426 - MPING 430 0.0004 (1/2854) 0 * Os_TE_73144 Os_TE_73144 Chr8 7704423 7704422 + MPING 430 0.0004 (1/2836) 0 * Os_TE_73145 Os_TE_73143 Chr8 7704352 7704353 + MuDR3_OS 8604 0.2851 (830/2911) 0 * Os_TE_73142 Os_TE_73142 Chr8 7704344 7704343 - MuDR3_OS 8604 0.2780 (803/2888) 0 * Os_TE_73143 Os_TE_73096 Chr8 7672883 7672884 - RIREX_LTR 8828 0.0014 (4/2887) 0 * * Os_TE_73094 Chr8 7672204 7672203 - ORSgTEMT01602413 239 0.0353 (104/2945) 0 * * Os_TE_73088 Chr8 7667967 7667968 + ENSPM6_OS 9815 0.0003 (1/2999) 0 * Os_TE_73087 Os_TE_73087 Chr8 7667965 7667964 - ENSPM6_OS 9815 0.0003 (1/2971) 0 * Os_TE_73088 Os_TE_73077 Chr8 7665759 7665758 - TRUNCATOR 2918 0.0003 (1/2984) 0 * Os_TE_73076 Os_TE_73076 Chr8 7665758 7665759 + TRUNCATOR 2918 0.0003 (1/2984) 0 * Os_TE_73077 Os_TE_73057 Chr8 7653194 7653195 - RIREX_LTR 8828 0.0178 (53/2974) 0 * Os_TE_73056 Os_TE_73056 Chr8 7653190 7653189 + RIREX_LTR 8828 0.0181 (54/2991) 0 * Os_TE_73057 Os_TE_73046 Chr8 7651309 7651310 - RIRE3A_LTR 10580 0.0014 (4/2921) 0 * Os_TE_73045 Os_TE_73045 Chr8 7651305 7651304 + ORSiTERTOOT00027 10853 0.0014 (4/2834) 0 * Os_TE_73046 Os_TE_73034 Chr8 7649376 7649375 + F569 228 0.0417 (124/2977) 0 * * Os_TE_73012 Chr8 7641239 7641240 - RIRE3A_LTR 10580 0.0003 (1/2995) 0 * Os_TE_73011 Os_TE_73011 Chr8 7641235 7641234 + ORSiTERTOOT00027 10853 0.0003 (1/2969) 0 * Os_TE_73012 Os_TE_73000 Chr8 7637212 7637213 - OSTE1 801 0.0727 (198/2725) 0 * * Os_TE_72996 Chr8 7635556 7635557 - ENSPM2_OS 10580 0.0742 (184/2480) 0 * * Os_TE_72994 Chr8 7634531 7634532 - YOUREN 286 0.0634 (188/2966) 0 * * Os_TE_72992 Chr8 7634429 7625162 - ORSgTETN00200001 10994 0.2545 (753/2959) 1 Intact Os_TE_72988 Os_TE_72988 Chr8 7625162 7634429 + SPMLIKE 10989 0.2599 (761/2928) 1 Intact Os_TE_72992 Os_TE_72981 Chr8 7623729 7623728 - RETROSAT2LTR 12796 0.0011 (3/2856) 0 * * Os_TE_72979 Chr8 7623417 7623416 + ORSgTETN00200005 1121 0.0164 (48/2926) 0 * Os_TE_72978 Os_TE_72978 Chr8 7623407 7623408 + CACTA-B 1103 0.0111 (32/2886) 0 * Os_TE_72979 Os_TE_72966 Chr8 7621614 7621615 - RIREX_LTR 8828 0.0020 (6/2982) 0 * * Os_TE_72963 Chr8 7621044 7621043 - RIRE2_LTR 11306 0.0013 (4/2977) 0 * * Os_TE_72945 Chr8 7613041 7613042 + CACTA-I 1124 0.0007 (2/2990) 0 * * Os_TE_72944 Chr8 7612937 7612936 - STOWAWAY45_OS 266 0.0023 (7/2997) 0 * Os_TE_72943 Os_TE_72943 Chr8 7612934 7612935 + STOWAWAY45_OS 266 0.0020 (6/2994) 0 * Os_TE_72944 Os_TE_72936 Chr8 7605450 7605451 - MPING 430 0.0003 (1/2988) 0 * Os_TE_72935 Os_TE_72935 Chr8 7605448 7605447 + MPING 430 0.0003 (1/2991) 0 * Os_TE_72936 Os_TE_72933 Chr8 7604631 7604630 + ORSgTEMT01601591 242 0.2137 (637/2981) 0 * Os_TE_72932 Os_TE_72932 Chr8 7604625 7604626 + STOWAWAY51_OS 246 0.1981 (583/2943) 0 * Os_TE_72933 Os_TE_72931 Chr8 7604530 7604531 + MDR2 6967 0.0003 (1/2947) 0 * Os_TE_72930 Os_TE_72930 Chr8 7604522 7604521 + MDR2 6967 0.0003 (1/2952) 0 * Os_TE_72931 Os_TE_72914 Chr8 7601054 7601055 + RIRE2_LTR 11306 0.0003 (1/2953) 0 * * Os_TE_72913 Chr8 7600545 7600546 + MPING 430 0.0003 (1/2962) 0 * Os_TE_72912 Os_TE_72912 Chr8 7600543 7600542 - MPING 430 0.0003 (1/2974) 0 * Os_TE_72913 Os_TE_72911 Chr8 7600419 7597028 + SZ-40LTR 2465 0.2857 (852/2982) 1 Intact Os_TE_72908 Os_TE_72908 Chr8 7597028 7600419 - SZ-40LTR 2465 0.2897 (860/2969) 1 Intact Os_TE_72911 Os_TE_72890 Chr8 7588707 7588708 - AMYLTP 383 0.0010 (3/2939) 0 * Os_TE_72889 Os_TE_72889 Chr8 7588699 7588698 + AMYLTP 383 0.0017 (5/2939) 0 * Os_TE_72890 Os_TE_72885 Chr8 7585498 7585499 - COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * * Os_TE_72868 Chr8 7581448 7581449 - COPIA2-LTR_OS 6433 0.0190 (56/2948) 0 * Os_TE_72867 Os_TE_72867 Chr8 7581444 7581443 + COPIA2-LTR_OS 6433 0.0170 (50/2941) 0 * Os_TE_72868 Os_TE_72866 Chr8 7581345 7581346 - SZ-22_LTR 4403 0.0003 (1/2968) 0 * Os_TE_72865 Os_TE_72865 Chr8 7581341 7581340 + ORSiTERTOOT00226 792 0.0003 (1/2969) 0 * Os_TE_72866 Os_TE_72860 Chr8 7579979 7579980 - COPIA2-LTR_OS 6433 0.0003 (1/2971) 0 * Os_TE_72859 Os_TE_72859 Chr8 7579975 7579974 + COPIA2-LTR_OS 6433 0.0003 (1/2967) 0 * Os_TE_72860 Os_TE_72855 Chr8 7578644 7578643 + SEVERIN-2 1952 0.0003 (1/2949) 0 * * Os_TE_72853 Chr8 7575151 7575150 - TRUNCATOR 2918 0.0010 (3/2990) 0 * Os_TE_72852 Os_TE_72852 Chr8 7575150 7575151 + TRUNCATOR 2918 0.0010 (3/2986) 0 * Os_TE_72853 Os_TE_72838 Chr8 7568108 7568107 - ORSgTERT00200351 477 0.0011 (3/2849) 0 * * Os_TE_72833 Chr8 7566553 7566554 + RIREX_LTR 8828 0.0010 (3/2890) 0 * * Os_TE_72831 Chr8 7566011 7566012 + RIREX_LTR 8828 0.0003 (1/2966) 0 * Os_TE_72830 Os_TE_72830 Chr8 7566007 7566006 - RIREX_LTR 8828 0.0003 (1/2969) 0 * Os_TE_72831 Os_TE_72706 Chr8 7500909 7500908 + ORSiTERTOOT00296 5553 0.0003 (1/2997) 0 * * Os_TE_72689 Chr8 7492935 7492934 - ORSgTEMT02400179 221 0.0511 (153/2992) 0 * Os_TE_72688 Os_TE_72688 Chr8 7492933 7492934 + ORSgTEMT02400014 229 0.0521 (156/2993) 0 * Os_TE_72689 Os_TE_72685 Chr8 7492400 7492399 + ORSiTERTOOT00296 5553 0.0003 (1/2992) 0 * * Os_TE_72496 Chr8 7410649 7410648 - RIRE2_LTR 11306 0.0499 (107/2146) 0 * * Os_TE_72494 Chr8 7410538 7410539 - TEMPINDAS 4259 0.1386 (300/2165) 0 * Os_TE_72493 Os_TE_72493 Chr8 7410531 7410530 + TEMPINDAS 4259 0.1344 (290/2157) 0 * Os_TE_72494 Os_TE_72490 Chr8 7410507 7410508 - RIREX_LTR 8828 0.0009 (2/2168) 0 * * Os_TE_72488 Chr8 7410480 7410481 - RIRE2_LTR 11306 0.0115 (25/2165) 0 * Os_TE_72487 Os_TE_72487 Chr8 7410476 7410475 + RIRE2_LTR 11306 0.0129 (28/2166) 0 * Os_TE_72488 Os_TE_72481 Chr8 7409828 7409829 + MuDR2_OS 6770 0.1143 (244/2134) 0 * Os_TE_72480 Os_TE_72480 Chr8 7409820 7409819 - MuDR2_OS 6770 0.1283 (277/2159) 0 * Os_TE_72481 Os_TE_72475 Chr8 7408254 7408255 - RIREX_LTR 8828 0.0123 (27/2187) 0 * * Os_TE_72456 Chr8 7405144 7395907 - ORSgTETN00200001 10994 0.3673 (767/2088) 1 Intact * Os_TE_72368 Chr8 7363369 7363370 + TRUNCATOR 2918 0.0010 (3/2992) 0 * * Os_TE_72355 Chr8 7360056 7360057 - COPIA2-LTR_OS 6433 0.0003 (1/2986) 0 * * Os_TE_72327 Chr8 7338176 7338175 - TRUNCATOR 2918 0.2345 (692/2951) 0 * Os_TE_72326 Os_TE_72326 Chr8 7338175 7338176 + TRUNCATOR 2918 0.2430 (720/2963) 0 * Os_TE_72327 Os_TE_72291 Chr8 7326962 7326961 - COPIA2-LTR_OS 6433 0.0004 (1/2654) 0 * * Os_TE_72289 Chr8 7326392 7326393 - TELIA 141 0.0003 (1/2985) 0 * Os_TE_72288 Os_TE_72288 Chr8 7326384 7326383 + TELIA 141 0.0003 (1/2985) 0 * Os_TE_72289 Os_TE_72287 Chr8 7325698 7325699 + COPIA2-LTR_OS 6433 0.0007 (2/2920) 0 * Os_TE_72286 Os_TE_72286 Chr8 7325694 7325693 - COPIA2-LTR_OS 6433 0.0007 (2/2965) 0 * Os_TE_72287 Os_TE_72285 Chr8 7325652 7325653 - CACTA-B 1103 0.3511 (1052/2996) 0 * * Os_TE_72283 Chr8 7325626 7325627 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_72282 Os_TE_72282 Chr8 7325622 7325621 - COPIA2-LTR_OS 6433 0.0003 (1/2924) 0 * Os_TE_72283 Os_TE_72281 Chr8 7325563 7325564 + SPMLIKE 10989 0.0204 (61/2996) 0 * Os_TE_72280 Os_TE_72280 Chr8 7325561 7325560 - ORSgTETN00200001 10994 0.0187 (56/2992) 0 * Os_TE_72281 Os_TE_72277 Chr8 7324788 7324789 + MDR2 6967 0.0007 (2/2986) 0 * Os_TE_72276 Os_TE_72276 Chr8 7324780 7324779 - MDR2 6967 0.0007 (2/2985) 0 * Os_TE_72277 Os_TE_72275 Chr8 7324669 7324668 - ORSiTERTOOT00004 4000 0.0003 (1/2983) 0 * * Os_TE_72263 Chr8 7318844 7318843 - MuDR4_OS 7610 0.2178 (558/2562) 0 * * Os_TE_72176 Chr8 7262630 7262276 + TYPEU3 380 0.8691 (1905/2192) 1 Intact * Os_TE_72173 Chr8 7261017 7261016 + COPIA2-LTR_OS 6433 0.0010 (2/1945) 0 * * Os_TE_72157 Chr8 7257095 7257094 + TRUNCATOR 2918 0.0027 (5/1856) 0 * * Os_TE_72064 Chr8 7223826 7223825 - RIRE2_LTR 11306 0.0971 (288/2966) 0 * * Os_TE_72056 Chr8 7222113 7210702 + SPMLIKE 10989 0.2746 (789/2873) 1 Intact Os_TE_72045 Os_TE_72045 Chr8 7210702 7222113 - ORSgTETN00200001 10994 0.2562 (724/2826) -1 Intact Os_TE_72056 Os_TE_71290 Chr8 6755838 6755839 + RIRE3A_LTR 10580 0.0004 (1/2786) 0 * * Os_TE_71285 Chr8 6754733 6754734 + MERMITE18C 1473 0.0148 (40/2709) 0 * Os_TE_71284 Os_TE_71284 Chr8 6754731 6754730 - MERMITE18D 1491 0.0144 (39/2707) 0 * Os_TE_71285 Os_TE_71266 Chr8 6748610 6748609 - ORSgTEMT01702320 154 0.0026 (7/2714) 0 * * Os_TE_71250 Chr8 6746780 6746781 + COPIA2-LTR_OS 6433 0.0004 (1/2723) 0 * Os_TE_71249 Os_TE_71249 Chr8 6746776 6746775 - COPIA2-LTR_OS 6433 0.0004 (1/2726) 0 * Os_TE_71250 Os_TE_71237 Chr8 6744613 6744614 + COPI2_LTR 4733 0.0004 (1/2725) 0 * Os_TE_71236 Os_TE_71236 Chr8 6744609 6744608 - COPI2_LTR 4733 0.0004 (1/2724) 0 * Os_TE_71237 Os_TE_71227 Chr8 6742394 6742395 - COPI2_LTR 4733 0.0004 (1/2742) 0 * * Os_TE_71202 Chr8 6728225 6728226 + TWIFBIG 3567 0.1529 (402/2630) 0 * * Os_TE_71189 Chr8 6723949 6723950 - CACTA-M 1129 0.0033 (9/2693) 0 * Os_TE_71188 Os_TE_71188 Chr8 6723947 6723946 + CACTA-H 1152 0.0033 (9/2689) 0 * Os_TE_71189 Os_TE_71177 Chr8 6719974 6719975 - RIRE2_LTR 11306 0.0063 (17/2685) 0 * Os_TE_71176 Os_TE_71176 Chr8 6719970 6719969 - ORSgTERT00201216 11284 0.0067 (18/2682) 0 * Os_TE_71177 Os_TE_71175 Chr8 6719721 6719722 + RIREX_LTR 8828 0.0004 (1/2669) 0 * Os_TE_71174 Os_TE_71174 Chr8 6719717 6719716 - RIREX_LTR 8828 0.0004 (1/2673) 0 * Os_TE_71175 Os_TE_70771 Chr8 6511701 6511700 + ORSiTERTOOT00027 10853 0.0139 (27/1943) 0 * * Os_TE_70653 Chr8 6465348 6465349 - RIREX_LTR 8828 0.0037 (7/1906) 0 * * Os_TE_70613 Chr8 6444661 6444662 + TRUNCATOR 2918 0.0021 (4/1940) 0 * * Os_TE_70596 Chr8 6439684 6439683 + ORSiTERTOOT00028 8600 0.0211 (40/1893) 0 * * Os_TE_70391 Chr8 6352815 6352814 + COPIA2-LTR_OS 6433 0.0023 (6/2604) 0 * * Os_TE_70390 Chr8 6352263 6352264 - RIREX_LTR 8828 0.0008 (2/2586) 0 * Os_TE_70389 Os_TE_70389 Chr8 6352259 6352258 + RIREX_LTR 8828 0.0008 (2/2580) 0 * Os_TE_70390 Os_TE_70382 Chr8 6350208 6350209 - SZ-22_LTR 4403 0.0004 (1/2594) 0 * * Os_TE_70364 Chr8 6335065 6335066 - COPIA2-LTR_OS 6433 0.0005 (1/1881) 0 * * Os_TE_70352 Chr8 6330174 6330173 - TRUNCATOR 2918 0.3827 (713/1863) 0 * * Os_TE_70324 Chr8 6316556 6316557 - ORSgTERT00201216 11284 0.0469 (83/1770) 0 * Os_TE_70323 Os_TE_70323 Chr8 6316552 6316551 - RIRE2_LTR 11306 0.0427 (74/1735) 0 * Os_TE_70324 Os_TE_70322 Chr8 6316370 6316371 + COPIA2-LTR_OS 6433 0.0008 (1/1285) 0 * Os_TE_70321 Os_TE_70321 Chr8 6316366 6316365 - COPIA2-LTR_OS 6433 0.0008 (1/1201) 0 * Os_TE_70322 Os_TE_70312 Chr8 6314702 6314703 - COPIA2-LTR_OS 6433 0.0032 (6/1881) 0 * Os_TE_70311 Os_TE_70311 Chr8 6314698 6314697 + COPIA2-LTR_OS 6433 0.0032 (6/1887) 0 * Os_TE_70312 Os_TE_70309 Chr8 6314210 6314211 - OSR3_LTR 5201 0.0240 (45/1877) 0 * Os_TE_70308 Os_TE_70308 Chr8 6314206 6314205 + OSR3_LTR 5201 0.0240 (45/1877) 0 * Os_TE_70309 Os_TE_70237 Chr8 6289870 6289871 + RIREX_LTR 8828 0.0003 (1/2906) 0 * Os_TE_70236 Os_TE_70236 Chr8 6289866 6289865 - RIREX_LTR 8828 0.0003 (1/2916) 0 * Os_TE_70237 Os_TE_70204 Chr8 6281850 6281851 - INDITTO 263 0.0023 (7/2992) 0 * Os_TE_70203 Os_TE_70203 Chr8 6281848 6281847 + INDITTO 263 0.0023 (7/2991) 0 * Os_TE_70204 Os_TE_70201 Chr8 6279245 6279246 + DS-RICE3N 525 0.0079 (23/2921) 0 * * Os_TE_70195 Chr8 6273943 6273942 - TYPEM 227 0.0057 (17/2985) 0 * Os_TE_70194 Os_TE_70194 Chr8 6273942 6273943 - ORSgTEMT02400246 177 0.0057 (17/2987) 0 * Os_TE_70195 Os_TE_70191 Chr8 6272922 6272923 - TNR12 528 0.0017 (5/2975) 0 * * Os_TE_70188 Chr8 6272044 6272045 - MDR2 6967 0.0004 (1/2852) 0 * * Os_TE_70168 Chr8 6266294 6266293 - ORSgTEMT02400179 221 0.0003 (1/2965) 0 * * Os_TE_70158 Chr8 6265033 6265032 + COPI2_LTR 4733 0.0003 (1/2938) 0 * * Os_TE_70154 Chr8 6264133 6264132 + NDNA1TNA_OS 334 0.0751 (224/2983) 0 * * Os_TE_70153 Chr8 6264088 6264089 + OSTE33 1012 0.1767 (521/2948) 0 * Os_TE_70152 Os_TE_70152 Chr8 6264079 6264078 + OSTE33 1012 0.1845 (547/2965) 0 * Os_TE_70153 Os_TE_70151 Chr8 6263976 6263977 - RETRO1_LTR 8314 0.0003 (1/2933) 0 * Os_TE_70150 Os_TE_70150 Chr8 6263972 6263971 + RETRO2A_LTR 12895 0.0003 (1/2931) 0 * Os_TE_70151 Os_TE_70147 Chr8 6262864 6262865 - RIREX_LTR 8828 0.0456 (134/2940) 0 * Os_TE_70146 Os_TE_70146 Chr8 6262860 6262859 + RIREX_LTR 8828 0.0453 (133/2936) 0 * Os_TE_70147 Os_TE_70130 Chr8 6259493 6259494 - SZ-22_LTR 4403 0.0007 (2/2981) 0 * Os_TE_70129 Os_TE_70129 Chr8 6259489 6259488 + ORSiTERTOOT00226 792 0.0007 (2/2978) 0 * Os_TE_70130 Os_TE_70120 Chr8 6258360 6258359 + ORSgTEMT01601591 242 0.0007 (2/2808) 0 * * Os_TE_70117 Chr8 6255885 6255886 - RIREX_LTR 8828 0.1865 (552/2959) 0 * * Os_TE_70110 Chr8 6254667 6254666 - RETRO2_LTR 12874 0.0435 (123/2827) 0 * * Os_TE_70087 Chr8 6251194 6251195 - TRUNCATOR 2918 0.0839 (246/2931) 0 * * Os_TE_70066 Chr8 6247178 6247179 - ORSiTETNOOT00216 3569 0.0231 (69/2985) 0 * Os_TE_70065 Os_TE_70065 Chr8 6247171 6247170 + TWIFBIG 3567 0.0225 (67/2982) 0 * Os_TE_70066 Os_TE_70057 Chr8 6237387 6237388 + ORSgTETNOOT01668 244 0.0007 (2/2949) 0 * * Os_TE_70023 Chr8 6234844 6234845 - NDNA1TNA_OS 334 0.1024 (304/2968) 0 * Os_TE_70022 Os_TE_70022 Chr8 6234842 6234841 + NDNA1TNA_OS 334 0.1074 (318/2961) 0 * Os_TE_70023 Os_TE_70020 Chr8 6234780 6234781 + RIRE2_LTR 11306 0.1361 (401/2946) 0 * Os_TE_70019 Os_TE_70019 Chr8 6234776 6234775 - RIRE2_LTR 11306 0.1378 (407/2954) 0 * Os_TE_70020 Os_TE_70015 Chr8 6231406 6231407 + ORSgTERT00200498 797 0.0003 (1/2975) 0 * * Os_TE_69979 Chr8 6217604 6217603 + ORSiTERTOOT00034 791 0.0003 (1/2997) 0 * * Os_TE_69959 Chr8 6204187 6204188 - DS-RICE2N 613 0.0054 (16/2965) 0 * Os_TE_69958 Os_TE_69958 Chr8 6204180 6204179 + DS-RICE4N 715 0.0040 (12/2966) 0 * Os_TE_69959 Os_TE_69956 Chr8 6203619 6203618 - TEMPINDAS 4259 0.0015 (4/2650) 0 * * Os_TE_69954 Chr8 6203483 6203482 - RETRO1_LTR 8314 0.0023 (6/2642) 0 * * Os_TE_69951 Chr8 6202602 6202603 - RIRE3_LTR 12054 0.4656 (535/1149) -1 * * Os_TE_69916 Chr8 6197886 6197885 - ORSiTERT00100063 7723 0.0003 (1/2910) 0 * * Os_TE_69914 Chr8 6197368 6197367 - RIRE2_LTR 11306 0.0003 (1/2968) 0 * * Os_TE_69913 Chr8 6196984 6196985 - OSTE20 496 0.0676 (186/2751) 0 * * Os_TE_69909 Chr8 6195670 6195669 + RETRO2A_LTR 12895 0.0027 (8/2965) 0 * * Os_TE_69908 Chr8 6194567 6194568 - COPIA1-LTR_OS 9292 0.0003 (1/2936) 0 * * Os_TE_69907 Chr8 6194539 6194540 + AMYLTP 383 0.0007 (2/2949) 0 * Os_TE_69906 Os_TE_69906 Chr8 6194531 6194530 - AMYLTP 383 0.0007 (2/2955) 0 * Os_TE_69907 Os_TE_69904 Chr8 6193967 6193968 + ORSiTEMT00300001 383 0.1254 (371/2958) 0 * Os_TE_69903 Os_TE_69903 Chr8 6193962 6193961 + ORSgTEMT00300063 413 0.1201 (352/2932) 0 * Os_TE_69904 Os_TE_69902 Chr8 6193901 6193902 + ORSgTEMT00901345 248 0.1531 (457/2985) 0 * * Os_TE_69900 Chr8 6193882 6193883 + TRUNCATOR 2918 0.0013 (4/2989) 0 * * Os_TE_69899 Chr8 6193477 6193478 - TRUNCATOR2_LTR 2904 0.0443 (132/2977) 0 * * Os_TE_69898 Chr8 6193473 6193472 + ORSiCMCM00100019 2717 0.7487 (2234/2984) 0 * * Os_TE_69896 Chr8 6192748 6192749 + RIRE5-LTR_OS 6427 0.1183 (327/2763) 0 * * Os_TE_69886 Chr8 6189047 6189046 + RETROSAT2LTR 12796 0.0256 (76/2969) 0 * * Os_TE_69885 Chr8 6188659 6188660 - MIDWAY 985 0.0902 (259/2871) 0 * * Os_TE_69883 Chr8 6188586 6188585 + OSTE33 1012 0.0795 (217/2731) 0 * * Os_TE_69880 Chr8 6187437 6187438 - TRUNCATOR 2918 0.0120 (20/1664) 0 * * Os_TE_69876 Chr8 6185603 6185602 - CLOUD-6 508 0.1789 (521/2912) 0 * * Os_TE_69864 Chr8 6182845 6182844 + ORSgTETNOOT01668 244 0.0081 (24/2972) 0 * * Os_TE_69863 Chr8 6182656 6182657 - RIRE2_LTR 11306 0.0020 (6/2974) 0 * Os_TE_69862 Os_TE_69862 Chr8 6182652 6182651 + RIRE2_LTR 11306 0.0024 (7/2962) 0 * Os_TE_69863 Os_TE_69857 Chr8 6181935 6181934 + OSTE20 496 0.0010 (3/2950) 0 * * Os_TE_69856 Chr8 6181734 6181733 - SZ-9LTR 965 0.0483 (144/2981) 0 * * Os_TE_69853 Chr8 6181135 6181136 - SZ-57_LTR 3700 0.7082 (2112/2982) 0 * * Os_TE_69838 Chr8 6168096 6168095 - ORSgTETNOOT02000 263 0.0010 (3/2968) 0 * * Os_TE_69837 Chr8 6168083 6168084 - INDITTO 263 0.0007 (2/2965) 0 * * Os_TE_69812 Chr8 6163325 6163326 + HELITRON7_OS 10153 0.0010 (3/2994) 0 * * Os_TE_69806 Chr8 6161561 6161562 - MUDRN3_OS 903 0.2068 (615/2974) 0 * Os_TE_69805 Os_TE_69805 Chr8 6161553 6161552 + MUDRN3_OS 903 0.1977 (585/2959) 0 * Os_TE_69806 Os_TE_69804 Chr8 6161419 6161418 - ORSgTEMT02400246 177 0.0003 (1/2987) 0 * Os_TE_69803 Os_TE_69803 Chr8 6161418 6161419 - TYPEM 227 0.0003 (1/2981) 0 * Os_TE_69804 Os_TE_69801 Chr8 6159387 6159386 - TELIA 141 0.0004 (1/2627) 0 * * Os_TE_69800 Chr8 6158697 6158698 + ORSgTETNOOT00543 259 0.1461 (369/2525) 0 * Os_TE_69799 Os_TE_69799 Chr8 6158696 6158695 - ORSgTETNOOT01607 258 0.1398 (403/2883) 0 * Os_TE_69800 Os_TE_69791 Chr8 6157307 6157306 + ORSgTEMT00500095 150 0.0089 (15/1694) 0 * * Os_TE_69790 Chr8 6157291 6157292 + STOWAWAY15-2_OS 145 0.0013 (4/2994) 0 * * Os_TE_69780 Chr8 6154352 6154353 - MuDR4_OS 7610 0.1268 (366/2887) 0 * Os_TE_69779 Os_TE_69779 Chr8 6154344 6154343 - MuDR4_OS 7610 0.1292 (367/2840) 0 * Os_TE_69780 Os_TE_69776 Chr8 6153214 6153215 + RIRE2_LTR 11306 0.0902 (265/2939) 0 * Os_TE_69775 Os_TE_69775 Chr8 6153210 6153209 - RIRE2_LTR 11306 0.0909 (268/2947) 0 * Os_TE_69776 Os_TE_69774 Chr8 6151935 6151934 + OLO24B 335 0.5795 (1348/2326) -1 * * Os_TE_69773 Chr8 6151902 6145004 + GYPSY1-LTR_OS 8900 0.5437 (1294/2380) 1 Intact Os_TE_69764 Os_TE_69764 Chr8 6145004 6151902 - GYPSY1-LTR_OS 8900 0.5562 (1649/2965) 1 Intact Os_TE_69773 Os_TE_69716 Chr8 6127685 6127686 + COPIA2-LTR_OS 6433 0.0004 (1/2646) 0 * Os_TE_69715 Os_TE_69715 Chr8 6127681 6127680 - COPIA2-LTR_OS 6433 0.0004 (1/2648) 0 * Os_TE_69716 Os_TE_69699 Chr8 6125700 6125699 - MuDR2_OS 6770 0.0995 (262/2632) 0 * * Os_TE_69682 Chr8 6122658 6122659 + COPIA2-LTR_OS 6433 0.0636 (132/2077) 0 * * Os_TE_69671 Chr8 6121077 6121078 + SZ-9LTR 965 0.2473 (518/2095) 0 * * Os_TE_69646 Chr8 6115712 6115713 + CLOUD-7 495 0.0828 (242/2923) 0 * Os_TE_69645 Os_TE_69645 Chr8 6115706 6115705 + CLOUD-7 495 0.0803 (231/2877) 0 * Os_TE_69646 Os_TE_69641 Chr8 6112859 6112858 + ORSgTEMT01601591 242 0.0013 (4/2992) 0 * Os_TE_69640 Os_TE_69640 Chr8 6112853 6112854 + STOWAWAY51_OS 246 0.0010 (3/2995) 0 * Os_TE_69641 Os_TE_69625 Chr8 6106839 6106838 - RETRO2A_LTR 12895 0.0020 (6/2982) 0 * * Os_TE_69580 Chr8 6095162 6095163 - RIRE2_LTR 11306 0.0065 (19/2913) 0 * Os_TE_69579 Os_TE_69579 Chr8 6095158 6095157 + RIREX_LTR 8828 0.0065 (19/2912) 0 * Os_TE_69580 Os_TE_69554 Chr8 6087159 6087160 + GYPSY-A_LTR 8951 0.0003 (1/2907) 0 * Os_TE_69553 Os_TE_69553 Chr8 6087155 6087154 - GYPSY-A_LTR 8951 0.0003 (1/2909) 0 * Os_TE_69554 Os_TE_69490 Chr8 6065522 6065521 + STOWAWAY9_OS 235 0.0219 (65/2969) 0 * * Os_TE_69481 Chr8 6060592 6060593 + RIRE2_LTR 11306 0.0021 (6/2875) 0 * * Os_TE_69473 Chr8 6057895 6058158 - STOWAWAY45_OS 266 0.8013 (2298/2868) 1 Intact * Os_TE_69467 Chr8 6056225 6056226 - RIRE2_LTR 11306 0.0046 (12/2597) 0 * Os_TE_69466 Os_TE_69466 Chr8 6056221 6056220 - ORSgTERT00201216 11284 0.0059 (14/2386) 0 * Os_TE_69467 Os_TE_69465 Chr8 6055842 6055843 + TWIF 586 0.0154 (44/2854) 0 * * Os_TE_69446 Chr8 6050488 6050487 + TRUNCATOR 2918 0.2100 (569/2709) 0 * * Os_TE_69444 Chr8 6050455 6050454 + ORSiTERTOOT00291 11421 0.0726 (208/2865) 0 * * Os_TE_69440 Chr8 6049893 6049894 - TYPEM 227 0.0007 (2/2886) 0 * * Os_TE_69439 Chr8 6049467 6049468 + RIREX_LTR 8828 0.1983 (574/2895) 0 * Os_TE_69438 Os_TE_69438 Chr8 6049463 6049462 - RIREX_LTR 8828 0.1985 (571/2877) 0 * Os_TE_69439 Os_TE_69436 Chr8 6043727 6043728 + ORSiTERTOOT00333 4719 0.0003 (1/2922) 0 * Os_TE_69435 Os_TE_69435 Chr8 6043724 6043723 - ORSiTERTOOT00333 4719 0.0003 (1/2928) 0 * Os_TE_69436 Os_TE_69419 Chr8 6039070 6039071 + ORSgTETNOOT01668 244 0.0030 (9/2976) 0 * * Os_TE_69418 Chr8 6038795 6038794 - ORSiTEMT01300001 950 0.0277 (83/2995) 0 * * Os_TE_69410 Chr8 6031334 6031335 - ORSgTERT00201216 11284 0.0005 (1/1932) 0 * Os_TE_69409 Os_TE_69409 Chr8 6031330 6031329 - RIRE2_LTR 11306 0.0004 (1/2590) 0 * Os_TE_69410 Os_TE_69394 Chr8 6025216 6025217 + ORSgTETNOOT01219 231 0.0094 (28/2974) 0 * Os_TE_69393 Os_TE_69393 Chr8 6025210 6025209 + ORSgTETNOOT00908 242 0.0094 (28/2976) 0 * Os_TE_69394 Os_TE_69388 Chr8 6023780 6023779 - TRUNCATOR 2918 0.1022 (306/2994) 0 * Os_TE_69387 Os_TE_69387 Chr8 6023779 6023780 + TRUNCATOR 2918 0.1046 (313/2992) 0 * Os_TE_69388 Os_TE_69386 Chr8 6023569 6023568 - ORSgTETN00200001 10994 0.0023 (7/2996) 0 * Os_TE_69385 Os_TE_69385 Chr8 6023568 6023569 + CACTA-B 1103 0.0020 (6/2989) 0 * Os_TE_69386 Os_TE_69367 Chr8 6013064 6013065 - NDNA1TNA_OS 334 0.0041 (9/2181) 0 * Os_TE_69366 Os_TE_69366 Chr8 6013063 6013062 + NDNA1TNA_OS 334 0.0073 (9/1229) 0 * Os_TE_69367 Os_TE_69365 Chr8 6012518 6012519 - ORSgTETN00200001 10994 0.1195 (307/2569) 0 * Os_TE_69364 Os_TE_69364 Chr8 6012516 6012515 + SPMLIKE 10989 0.1262 (327/2591) 0 * Os_TE_69365 Os_TE_69355 Chr8 6011401 6011400 - RIRE2_LTR 11306 0.0008 (2/2591) 0 * * Os_TE_69335 Chr8 6006563 6006564 + ORSgTETNOOT00908 242 0.0003 (1/2923) 0 * * Os_TE_69334 Chr8 6005780 6005781 + ORSgTETNOOT00908 242 0.0017 (5/2964) 0 * * Os_TE_69327 Chr8 6000927 6000928 - SC-3_LTR 5748 0.0087 (26/2988) 0 * * Os_TE_69307 Chr8 5991805 5991806 - ORSgTETN00200001 10994 0.0010 (3/2980) 0 * Os_TE_69306 Os_TE_69306 Chr8 5991803 5991802 + SPMLIKE 10989 0.0010 (3/2965) 0 * Os_TE_69307 Os_TE_69305 Chr8 5991655 5991656 - NDNA1TNA_OS 334 0.0017 (5/2961) 0 * Os_TE_69304 Os_TE_69304 Chr8 5991654 5991653 + NDNA1TNA_OS 334 0.0017 (5/2968) 0 * Os_TE_69305 Os_TE_69283 Chr8 5981319 5981320 - ORSgTERT00201216 11284 0.0115 (32/2782) 0 * Os_TE_69282 Os_TE_69282 Chr8 5981315 5981314 - RIRE2_LTR 11306 0.0115 (32/2783) 0 * Os_TE_69283 Os_TE_69271 Chr8 5979837 5979838 + STOWAWAY49_OS 241 0.2875 (839/2918) 0 * Os_TE_69270 Os_TE_69270 Chr8 5979832 5979831 - ORSgTERT00201216 11284 0.0005 (1/2007) 0 * Os_TE_69271 Os_TE_69269 Chr8 5979765 5979764 + NDNA1TNA_OS 334 0.0022 (6/2778) 0 * * Os_TE_69259 Chr8 5978692 5978691 + ORSgTEMT00900897 248 0.0046 (13/2799) 0 * Os_TE_69258 Os_TE_69258 Chr8 5978689 5978690 + ORSgTEMT00901288 246 0.0057 (16/2799) 0 * Os_TE_69259 Os_TE_69253 Chr8 5976129 5976130 - RETROSAT2LTR 12796 0.0015 (3/1994) 0 * * Os_TE_69251 Chr8 5974492 5974493 - RETROSAT2LTRA 3112 0.0035 (9/2586) 0 * Os_TE_69250 Os_TE_69250 Chr8 5974488 5974487 + RETROSAT2LTRA 3112 0.0035 (9/2595) 0 * Os_TE_69251 Os_TE_69232 Chr8 5970894 5970893 - TYPEM 227 0.0028 (8/2883) 0 * * Os_TE_69216 Chr8 5968172 5968173 + ORSgTETNOOT00908 242 0.0975 (289/2965) 0 * Os_TE_69215 Os_TE_69215 Chr8 5968171 5968170 - NDNA1TNA_OS 334 0.0926 (274/2959) 0 * Os_TE_69216 Os_TE_69213 Chr8 5965007 5965006 + F524 291 0.0017 (5/2977) 0 * * Os_TE_69208 Chr8 5963529 5963528 - MERMITEA 1710 0.0343 (86/2508) 0 * * Os_TE_69201 Chr8 5956978 5956740 + ORSgTEMT01601036 240 0.4216 (1059/2512) 1 Intact Os_TE_69200 Os_TE_69200 Chr8 5956740 5956978 - ORSgTEMT01601768 238 0.4231 (1056/2496) 1 Intact Os_TE_69201 Os_TE_69199 Chr8 5956559 5956560 - MPING 430 0.0037 (9/2424) 0 * Os_TE_69198 Os_TE_69198 Chr8 5956557 5956556 + MPING 430 0.0040 (10/2483) 0 * Os_TE_69199 Os_TE_69193 Chr8 5956352 5956203 + ORSgTEMT00501601 153 0.4398 (1066/2424) 1 Intact Os_TE_69190 Os_TE_69190 Chr8 5956200 5956344 + ORSgTEMT00501072 147 0.4320 (1061/2456) 1 Intact Os_TE_69193 Os_TE_69188 Chr8 5954107 5954106 - TEOS1 476 0.5292 (1077/2035) 0.75 * * Os_TE_69185 Chr8 5952157 5952156 - ORSgTEMT01601493 303 0.0046 (5/1077) 0 * * Os_TE_69183 Chr8 5950971 5950972 + ORSgTEMT01700715 134 0.0790 (83/1051) 0 * * Os_TE_69179 Chr8 5947131 5947130 - TRUNCATOR2_LTR 2904 0.0010 (2/1991) 0 * * Os_TE_69160 Chr8 5939966 5940234 + ORSgTEMT00900453 262 0.5558 (1071/1927) 1 Intact * Os_TE_69151 Chr8 5929401 5929400 - EnSpm-10_OS 11265 0.0047 (5/1058) 0 * * Os_TE_69136 Chr8 5921706 5921707 - COPIA2-LTR_OS 6433 0.0031 (3/981) 0 * Os_TE_69135 Os_TE_69135 Chr8 5921702 5921701 + COPIA2-LTR_OS 6433 0.0041 (4/982) 0 * Os_TE_69136 Os_TE_69130 Chr8 5920014 5920015 - Cassandra_OS-LTR 764 0.0010 (1/961) 0 * * Os_TE_69078 Chr8 5890234 5890235 + OSTONOR1_LTR 6440 0.0010 (1/964) 0 * * Os_TE_69074 Chr8 5888891 5889130 - ORSgTEMT01400010 213 0.7177 (966/1346) 1 Intact * Os_TE_69073 Chr8 5888613 5888612 - STOWAWAY51_OS 246 0.0081 (8/989) 0 * Os_TE_69072 Os_TE_69072 Chr8 5888607 5888608 + STOWAWAY51_OS 246 0.0074 (7/944) 0 * Os_TE_69073 Os_TE_69055 Chr8 5879091 5879090 + ORSgTEMT00100531 325 0.0009 (1/1093) 0 * Os_TE_69054 Os_TE_69054 Chr8 5879084 5879085 + NDNA1TNA_OS 334 0.0009 (1/1091) 0 * Os_TE_69055 Os_TE_69053 Chr8 5879010 5879011 + DITTO3 260 0.0064 (7/1097) 0 * Os_TE_69052 Os_TE_69052 Chr8 5879009 5879008 + ORSgTEMT00900648 236 0.0055 (6/1087) 0 * Os_TE_69053 Os_TE_69051 Chr8 5878514 5878515 + ORSiTERTOOT00431 5108 0.0056 (6/1073) 0 * * Os_TE_69049 Chr8 5877281 5877282 + ORSiCMCM00100019 2717 0.0881 (88/999) 0 * * Os_TE_69042 Chr8 5876287 5876286 + RIRE2_LTR 11306 0.0964 (104/1079) 0 * * Os_TE_69005 Chr8 5863433 5863432 - STOWAWAY44_OS 240 0.0010 (1/1042) 0 * Os_TE_69004 Os_TE_69004 Chr8 5863430 5863431 - STOWAWAY44_OS 240 0.0010 (1/1048) 0 * Os_TE_69005 Os_TE_68998 Chr8 5861041 5861042 + COPIA2-LTR_OS 6433 0.0017 (5/2981) 0 * Os_TE_68997 Os_TE_68997 Chr8 5861037 5861036 - COPIA2-LTR_OS 6433 0.0017 (5/2957) 0 * Os_TE_68998 Os_TE_68995 Chr8 5859788 5859789 + ORSgTEMT00101020 261 0.0017 (5/2998) 0 * * Os_TE_68981 Chr8 5851965 5851738 - STOWAWAY43_OS 233 0.8654 (2534/2928) 1 Intact Os_TE_68976 Os_TE_68976 Chr8 5851738 5851965 + STOWAWAY43_OS 233 0.8804 (2406/2733) 1 Intact Os_TE_68981 Os_TE_68955 Chr8 5843072 5843071 + OSTONOR1_LTR 6440 0.0264 (79/2991) 0 * * Os_TE_68944 Chr8 5838850 5838851 + COPIA2-LTR_OS 6433 0.0044 (11/2487) 0 * Os_TE_68943 Os_TE_68943 Chr8 5838846 5838845 - COPIA2-LTR_OS 6433 0.0061 (15/2468) 0 * Os_TE_68944 Os_TE_68926 Chr8 5835874 5836025 - ORSgTEMT01700794 153 0.8752 (2601/2972) 1 Intact * Os_TE_68910 Chr8 5823947 5822659 + RETRO2_LTR 12874 0.2636 (778/2951) 1 Solo_LTR Os_TE_68908 Os_TE_68908 Chr8 5822659 5823947 - RETRO2_LTR 12874 0.2779 (829/2983) 1 Solo_LTR Os_TE_68910 Os_TE_68884 Chr8 5816887 5816886 - ORSgTETNOOT01534 208 0.1321 (390/2952) 0 * * Os_TE_68872 Chr8 5809379 5809121 - STOWAWAY10_OS 259 0.8577 (2387/2783) 1 Intact * Os_TE_68862 Chr8 5806477 5806478 + RIREX_LTR 8828 0.0003 (1/2996) 0 * Os_TE_68861 Os_TE_68861 Chr8 5806473 5806472 - RIREX_LTR 8828 0.0003 (1/2996) 0 * Os_TE_68862 Os_TE_68851 Chr8 5802667 5802668 + ORSgTEMT01602288 241 0.0007 (2/2822) 0 * * Os_TE_68844 Chr8 5801221 5801222 + COPIA2-LTR_OS 6433 0.0003 (1/2918) 0 * Os_TE_68843 Os_TE_68843 Chr8 5801217 5801216 - COPIA2-LTR_OS 6433 0.0003 (1/2931) 0 * Os_TE_68844 Os_TE_68840 Chr8 5800724 5800725 + MPING 430 0.0003 (1/2952) 0 * Os_TE_68839 Os_TE_68839 Chr8 5800722 5800721 - MPING 430 0.0008 (1/1318) 0 * Os_TE_68840 Os_TE_68836 Chr8 5799797 5799798 - STOWAWAY1_OS 149 0.0003 (1/2917) 0 * * Os_TE_68827 Chr8 5797237 5797238 + CASTAWAY 364 0.0026 (7/2719) 0 * * Os_TE_68815 Chr8 5793963 5793964 - EnSpm-15_OS 8871 0.0003 (1/2878) 0 * Os_TE_68814 Os_TE_68814 Chr8 5793961 5793960 + EnSpm-15_OS 8871 0.0003 (1/2935) 0 * Os_TE_68815 Os_TE_68812 Chr8 5792180 5792181 - ORSiTERTOOT00074 4935 0.0003 (1/2993) 0 * Os_TE_68811 Os_TE_68811 Chr8 5792176 5792175 + ORSiTERTOOT00074 4935 0.0003 (1/2990) 0 * Os_TE_68812 Os_TE_68803 Chr8 5790645 5790644 - RIRE2_LTR 11306 0.0007 (2/2878) 0 * * Os_TE_68800 Chr8 5787342 5787343 + SPMLIKE 10989 0.0013 (4/2983) 0 * Os_TE_68799 Os_TE_68799 Chr8 5787340 5787339 - ORSgTETN00200001 10994 0.0013 (4/2979) 0 * Os_TE_68800 Os_TE_68797 Chr8 5786906 5786907 - SZ-9LTR 965 0.0230 (67/2919) 0 * Os_TE_68796 Os_TE_68796 Chr8 5786902 5786901 + SZ-9LTR 965 0.0225 (66/2935) 0 * Os_TE_68797 Os_TE_68775 Chr8 5781460 5781459 + STOWAWAY51_OS 246 0.0003 (1/2995) 0 * * Os_TE_68763 Chr8 5778245 5778246 - ORSgTEMT01601834 234 0.0007 (2/2719) 0 * * Os_TE_68726 Chr8 5765608 5765607 - SZ-62LTR 3649 0.0010 (3/2973) 0 * * Os_TE_68716 Chr8 5762604 5762603 + ORSgTEMT01602181 239 0.1397 (415/2970) 0 * Os_TE_68715 Os_TE_68715 Chr8 5762601 5762602 + ORSgTEMT01601983 238 0.1417 (422/2979) 0 * Os_TE_68716 Os_TE_68708 Chr8 5759393 5759392 + ORSgTEMT00501629 149 0.0017 (5/2910) 0 * Os_TE_68707 Os_TE_68707 Chr8 5759387 5759388 - GAIJIN 147 0.0017 (5/2923) 0 * Os_TE_68708 Os_TE_68699 Chr8 5758073 5758072 - ORSgTEMT01602637 232 0.0017 (5/2984) 0 * * Os_TE_68690 Chr8 5755937 5755938 + SZ-62LTR 3649 0.0003 (1/2994) 0 * * Os_TE_68688 Chr8 5755412 5755413 - GYPSY-A_LTR 8951 0.0013 (4/2994) 0 * * Os_TE_68686 Chr8 5755208 5755209 + RIRE2_LTR 11306 0.0003 (1/2995) 0 * * Os_TE_68669 Chr8 5750377 5750378 + ORSiTERTOOT00296 5553 0.0003 (1/2974) 0 * Os_TE_68668 Os_TE_68668 Chr8 5750373 5750372 - SC-3_LTR 5748 0.0003 (1/2972) 0 * Os_TE_68669 Os_TE_68664 Chr8 5746689 5746690 + TWIF 586 0.1035 (279/2696) 0 * Os_TE_68663 Os_TE_68663 Chr8 5746682 5746681 - ORSiTETNOOT00200 3563 0.1603 (459/2864) 0 * Os_TE_68664 Os_TE_68639 Chr8 5744837 5744836 - ORSiTERTOOT00329 5144 0.0003 (1/2960) 0 * * Os_TE_68631 Chr8 5743676 5743677 - ORSiTETNOOT00200 3563 0.0169 (50/2965) 0 * Os_TE_68630 Os_TE_68630 Chr8 5743669 5743668 + TWIFBIG 3567 0.0172 (51/2960) 0 * Os_TE_68631 Os_TE_68616 Chr8 5741274 5741275 + RETRO2_LTR 12874 0.0138 (41/2976) 0 * Os_TE_68615 Os_TE_68615 Chr8 5741270 5741269 - RETRO2_LTR 12874 0.0135 (40/2973) 0 * Os_TE_68616 Os_TE_68609 Chr8 5739484 5739485 + ORSiTERTOOT00441 4741 0.0104 (31/2983) 0 * Os_TE_68608 Os_TE_68608 Chr8 5739479 5739478 - ORSiTERTOOT00441 4741 0.0104 (31/2978) 0 * Os_TE_68609 Os_TE_68607 Chr8 5738979 5738978 - TEMPINDAS 4259 0.0003 (1/2994) 0 * * Os_TE_68602 Chr8 5738219 5738218 - MDR2 6967 0.0238 (71/2979) 0 * * Os_TE_68592 Chr8 5736902 5736903 - ENSPM4_OS 11610 0.0141 (42/2983) 0 * * Os_TE_68590 Chr8 5736441 5736442 - AMYLTP 383 0.2615 (742/2837) 0 * Os_TE_68589 Os_TE_68589 Chr8 5736433 5736432 + AMYLTP 383 0.2608 (718/2753) 0 * Os_TE_68590 Os_TE_68576 Chr8 5732824 5732825 + AMYLTP 383 0.0003 (1/2986) 0 * * Os_TE_68569 Chr8 5727781 5727780 + CASTAWAY-3 314 0.0193 (57/2960) 0 * * Os_TE_68568 Chr8 5727269 5727270 - RETROSAT3_LTR 11537 0.0356 (106/2978) 0 * * Os_TE_68554 Chr8 5719744 5719745 - RIREX_LTR 8828 0.0017 (5/2997) 0 * Os_TE_68553 Os_TE_68553 Chr8 5719740 5719739 + RIREX_LTR 8828 0.0017 (5/2996) 0 * Os_TE_68554 Os_TE_68550 Chr8 5718428 5718429 - SC-3_LTR 5748 0.0003 (1/2962) 0 * * Os_TE_68543 Chr8 5716439 5716440 + ORSgTEMT01400031 216 0.0037 (11/2979) 0 * * Os_TE_68536 Chr8 5711863 5713882 + MERMITEB 1610 0.7834 (2311/2950) 1 Intact * Os_TE_68532 Chr8 5710797 5710796 + MERMITEB 1610 0.0034 (10/2956) 0 * * Os_TE_68514 Chr8 5699704 5699466 - ORSgTEMT01601493 303 0.7590 (2245/2958) 1 Intact Os_TE_68513 Os_TE_68513 Chr8 5699473 5699704 - ORSgTEMT01600993 233 0.7722 (2285/2959) 1 Intact Os_TE_68514 Os_TE_68502 Chr8 5696420 5696421 - DS-RICE2N 613 0.0328 (76/2315) 0 * Os_TE_68501 Os_TE_68501 Chr8 5696413 5696412 + DS-RICE4N 715 0.0320 (74/2313) 0 * Os_TE_68502 Os_TE_68500 Chr8 5695955 5695956 - SZ-62LTR 3649 0.0319 (74/2322) 0 * Os_TE_68499 Os_TE_68499 Chr8 5695951 5695950 + SZ-62LTR 3649 0.0293 (68/2319) 0 * Os_TE_68500 Os_TE_68491 Chr8 5689803 5689802 - NDNA2TNA_OS 346 0.0223 (63/2825) 0 * * Os_TE_68483 Chr8 5688166 5688165 + OSCOPIA2_LTR 5476 0.1532 (432/2819) 0 * * Os_TE_68482 Chr8 5687631 5687630 + ORSgTEMT01601934 207 0.2136 (588/2753) 0 * * Os_TE_68480 Chr8 5687470 5687471 - CLOUD-4 520 0.0018 (5/2806) 0 * Os_TE_68479 Os_TE_68479 Chr8 5687462 5687461 + CLOUD-4 520 0.0018 (5/2797) 0 * Os_TE_68480 Os_TE_68476 Chr8 5683965 5683966 + SZ-55_LTR 10318 0.0007 (2/2880) 0 * Os_TE_68475 Os_TE_68475 Chr8 5683961 5683960 - SZ-55_LTR 10318 0.0008 (2/2409) 0 * Os_TE_68476 Os_TE_68474 Chr8 5683956 5683957 - RIRE2_LTR 11306 0.0003 (1/2874) 0 * * Os_TE_68472 Chr8 5683682 5683681 + ORSgTEMT01601591 242 0.1755 (494/2815) 0 * * Os_TE_68467 Chr8 5682978 5682977 - ORSgTEMT00900099 250 0.1011 (238/2353) 0 * Os_TE_68466 Os_TE_68466 Chr8 5682976 5682977 - ORSgTEMT00901345 248 0.1042 (248/2381) 0 * Os_TE_68467 Os_TE_68455 Chr8 5677644 5677643 + DS-RICE4N 715 0.0918 (195/2125) 0 * * Os_TE_68451 Chr8 5674876 5674737 - OSTE19 162 0.8673 (2431/2803) 1 Intact * Os_TE_68442 Chr8 5671913 5671912 + RIREX_LTR 8828 0.0032 (9/2803) 0 * * Os_TE_68441 Chr8 5671899 5671898 + ORSgTEMT01701224 156 0.1944 (573/2948) 0 * * Os_TE_68432 Chr8 5670177 5670178 + MDR2 6967 0.0024 (4/1637) 0 * Os_TE_68431 Os_TE_68431 Chr8 5670168 5670167 - MDR2 6967 0.0024 (4/1645) 0 * Os_TE_68432 Os_TE_68430 Chr8 5670055 5670056 + MPING 430 0.0006 (1/1666) 0 * Os_TE_68429 Os_TE_68429 Chr8 5670053 5670052 - MPING 430 0.0006 (1/1665) 0 * Os_TE_68430 Os_TE_68425 Chr8 5668542 5667830 + GYPSY-B_LTR 7068 0.7274 (1670/2296) 1 Solo_LTR Os_TE_68420 Os_TE_68420 Chr8 5667830 5668542 - GYPSY1-LTR_OS 8900 0.7204 (1657/2300) 1 Solo_LTR Os_TE_68425 Os_TE_68411 Chr8 5663267 5663266 - ORSiTERTOOT00329 5144 0.0009 (2/2326) 0 * * Os_TE_68404 Chr8 5659459 5659458 + TWIFBIG 3567 0.0449 (64/1426) 0 * * Os_TE_68401 Chr8 5658509 5658510 - ORSgTETNOOT00477 252 0.0006 (1/1702) 0 * Os_TE_68400 Os_TE_68400 Chr8 5658504 5658503 - ORSgTETNOOT02575 245 0.0004 (1/2225) 0 * Os_TE_68401 Os_TE_68399 Chr8 5658322 5658321 - SINE9_OS 293 0.2350 (556/2366) 0 * * Os_TE_68394 Chr8 5655903 5656038 - ORSgTEMT00502293 151 0.6159 (1825/2963) 1 Intact * Os_TE_68392 Chr8 5655599 5655600 - STOWAWAY1_OS 149 0.2106 (613/2911) 0 * * Os_TE_68391 Chr8 5655226 5655225 - ORSgTETN00200002 7303 0.0005 (1/1868) 0 * * Os_TE_68365 Chr8 5649497 5649496 - ORSgTEMT01400022 212 0.3650 (1023/2803) 0 * * Os_TE_68364 Chr8 5649495 5649496 + STOWAWAY9_OS 235 0.2633 (770/2924) 0 * * Os_TE_68362 Chr8 5649370 5649369 + RETRO1_LTR 8314 0.0467 (124/2654) 0 * * Os_TE_68331 Chr8 5641450 5641451 - TESS 244 0.6862 (2025/2951) 0 * Os_TE_68330 Os_TE_68330 Chr8 5641443 5641442 + TESS 244 0.6825 (2006/2939) 0 * Os_TE_68331 Os_TE_68329 Chr8 5641346 5641347 + COPIA2-LTR_OS 6433 0.0013 (4/2976) 0 * Os_TE_68328 Os_TE_68328 Chr8 5641342 5641341 - COPIA2-LTR_OS 6433 0.0017 (5/2978) 0 * Os_TE_68329 Os_TE_68327 Chr8 5641286 5641287 + RETRO2_LTR 12874 0.0007 (2/2968) 0 * Os_TE_68326 Os_TE_68326 Chr8 5641282 5641281 - RETRO1_LTR 8314 0.0007 (2/2979) 0 * Os_TE_68327 Os_TE_68325 Chr8 5641056 5641057 - SC-3_LTR 5748 0.0495 (148/2989) 0 * Os_TE_68324 Os_TE_68324 Chr8 5641052 5641051 + ORSiTERTOOT00296 5553 0.0492 (147/2988) 0 * Os_TE_68325 Os_TE_68322 Chr8 5639595 5639312 - F770 284 0.5321 (1573/2956) 1 Intact * Os_TE_68319 Chr8 5638676 5638677 - TYPEM 227 0.0003 (1/2984) 0 * * Os_TE_68318 Chr8 5638155 5638156 + ORSgTEMT00700011 367 0.0043 (7/1620) 0 * * Os_TE_68317 Chr8 5638077 5638078 - STOWAWAY12_OS 312 0.0021 (6/2925) 0 * * Os_TE_68313 Chr8 5637405 5637406 + RETROSAT4_LTR 13504 0.0003 (1/2957) 0 * * Os_TE_68312 Chr8 5637229 5637230 - ORSgTEMT02400179 221 0.0038 (6/1596) 0 * Os_TE_68311 Os_TE_68311 Chr8 5637227 5637226 - ORSgTEMT02400064 212 0.0017 (5/2957) 0 * Os_TE_68312 Os_TE_68308 Chr8 5635905 5635906 + ORSiTERTOOT00028 8600 0.0003 (1/2974) 0 * Os_TE_68307 Os_TE_68307 Chr8 5635901 5635900 - TRUNCATOR2_LTR 2904 0.0003 (1/2984) 0 * Os_TE_68308 Os_TE_68306 Chr8 5635773 5635774 - ORSiTERTOOT00333 4719 0.3977 (1098/2761) 0 * Os_TE_68305 Os_TE_68305 Chr8 5635769 5635768 + ORSiTERTOOT00333 4719 0.4453 (1326/2978) 0 * Os_TE_68306 Os_TE_68294 Chr8 5632176 5632177 + DASIA-2 1198 0.0023 (7/2987) 0 * Os_TE_68293 Os_TE_68293 Chr8 5632168 5632167 - DASIA-2 1198 0.0020 (6/2990) 0 * Os_TE_68294 Os_TE_68288 Chr8 5627895 5627896 - RIRE2_LTR 11306 0.5393 (1503/2787) 0 * Os_TE_68287 Os_TE_68287 Chr8 5627891 5627890 - ORSgTERT00201216 11284 0.5520 (1567/2839) 0 * Os_TE_68288 Os_TE_68285 Chr8 5627511 5627512 - DNAUN1_OS 408 0.0021 (6/2858) 0 * * Os_TE_68284 Chr8 5627219 5626719 + OSTONOR1_LTR 6440 0.2857 (818/2863) 1 Solo_LTR Os_TE_68283 Os_TE_68283 Chr8 5626719 5627219 - ORSiTERT00100062 5674 0.2878 (823/2860) 1 Intact Os_TE_68284 Os_TE_68282 Chr8 5626604 5626603 - OSLINE1-5 4688 0.5458 (1566/2869) 0 * * Os_TE_68275 Chr8 5623624 5623623 + ORSgTEMT00500201 140 0.7281 (2075/2850) 0 * * Os_TE_68270 Chr8 5621941 5621942 + TNR8-1 418 0.6974 (2065/2961) 0 * Os_TE_68269 Os_TE_68269 Chr8 5621933 5621932 - TYPEG 427 0.7244 (2048/2827) 0 * Os_TE_68270 Os_TE_68266 Chr8 5620465 5620466 + ORSgTEMT00101341 314 0.6572 (1957/2978) 0 * Os_TE_68265 Os_TE_68265 Chr8 5620464 5620463 - NDNA1TNA_OS 334 0.6540 (1937/2962) 0 * Os_TE_68266 Os_TE_68252 Chr8 5616899 5616898 - STOWAWAY51_OS 246 0.6624 (1817/2743) 0 * * Os_TE_68245 Chr8 5608125 5608126 - RIRE2_LTR 11306 0.0007 (2/2966) 0 * Os_TE_68244 Os_TE_68244 Chr8 5608121 5608120 - ORSgTERT00201216 11284 0.0007 (2/2972) 0 * Os_TE_68245 Os_TE_68240 Chr8 5607355 5607356 - ORSgTEMT01602404 253 0.0003 (1/2989) 0 * * Os_TE_68239 Chr8 5607310 5607311 - MPING 430 0.0007 (2/2967) 0 * Os_TE_68238 Os_TE_68238 Chr8 5607308 5607307 + MPING 430 0.0007 (2/2990) 0 * Os_TE_68239 Os_TE_68226 Chr8 5600841 5600842 + SC-8_LTR 4951 0.0003 (1/2997) 0 * Os_TE_68225 Os_TE_68225 Chr8 5600837 5600836 - SC-8_LTR 4951 0.0003 (1/2995) 0 * Os_TE_68226 Os_TE_68223 Chr8 5599985 5599757 + ORSgTEMT01000005 227 0.7953 (2362/2970) 1 Intact Os_TE_68222 Os_TE_68222 Chr8 5599757 5599958 + ORSgTEMT01000006 225 0.7943 (2348/2956) 1 Intact Os_TE_68223 Os_TE_68219 Chr8 5597319 5597440 + F1275 157 0.8063 (2340/2902) 1 Intact * Os_TE_68205 Chr8 5591561 5591560 - ENSPM4_OS 11610 0.3109 (920/2959) 0 * * Os_TE_68201 Chr8 5590835 5590834 + STOWAWAY45_OS 266 0.0017 (5/2966) 0 * Os_TE_68200 Os_TE_68200 Chr8 5590832 5590833 + STOWAWAY45_OS 266 0.0017 (5/2959) 0 * Os_TE_68201 Os_TE_68199 Chr8 5590456 5590455 - DNAUN1_OS 408 0.1961 (586/2989) 0 * * Os_TE_68197 Chr8 5590380 5590379 - COPI2_LTR 4733 0.0003 (1/2981) 0 * * Os_TE_68196 Chr8 5589769 5589768 + STOWAWAY50_OS 174 0.0017 (5/2989) 0 * Os_TE_68195 Os_TE_68195 Chr8 5589766 5589767 - ORSgTEMT01701882 154 0.0017 (5/2974) 0 * Os_TE_68196 Os_TE_68188 Chr8 5586085 5586086 + ORSgTETNOOT00908 242 0.0003 (1/2989) 0 * * Os_TE_68169 Chr8 5577396 5576957 - ORSgTEMT01800105 452 0.8856 (2275/2569) 1 Intact * Os_TE_68166 Chr8 5576780 5576781 + ORSgTEMT05000092 279 0.2203 (642/2914) 0 * * Os_TE_68164 Chr8 5576644 5576645 - SZ-9LTR 965 0.2248 (654/2909) 0 * Os_TE_68163 Os_TE_68163 Chr8 5576640 5576639 + SZ-9LTR 965 0.2475 (732/2958) 0 * Os_TE_68164 Os_TE_68162 Chr8 5576614 5576615 - SZ-48LTR 3632 0.2456 (727/2960) 0 * Os_TE_68161 Os_TE_68161 Chr8 5576610 5576609 + SZ-48LTR 3632 0.2257 (659/2920) 0 * Os_TE_68162 Os_TE_68153 Chr8 5573734 5573735 - RETROSAT2LTR 12796 0.4283 (1278/2984) 0 * Os_TE_68152 Os_TE_68152 Chr8 5573732 5573731 + RETROSAT2LTRA 3112 0.4273 (1235/2890) 0 * Os_TE_68153 Os_TE_68143 Chr8 5571324 5571433 + DEBOAT 110 0.7726 (2310/2990) 1 Intact * Os_TE_68135 Chr8 5567232 5567233 - NDNA1TNA_OS 334 0.0420 (97/2311) 0 * Os_TE_68134 Os_TE_68134 Chr8 5567230 5567229 + NDNA1TNA_OS 334 0.0395 (91/2305) 0 * Os_TE_68135 Os_TE_68120 Chr8 5563125 5563124 - F569 228 0.0010 (3/2971) 0 * * Os_TE_68106 Chr8 5559061 5559062 + SPMLIKE 10989 0.0320 (91/2846) 0 * Os_TE_68105 Os_TE_68105 Chr8 5559059 5559058 - ORSgTETN00200001 10994 0.0334 (95/2846) 0 * Os_TE_68106 Os_TE_68104 Chr8 5558936 5558937 + MUDRN3_OS 903 0.1292 (299/2314) 0 * * Os_TE_68103 Chr8 5558393 5558394 - ORSgTEMT02400179 221 0.0004 (1/2749) 0 * * Os_TE_68086 Chr8 5555005 5554208 - CACTA-N 987 0.8005 (2131/2662) 1 Intact Os_TE_68085 Os_TE_68085 Chr8 5554208 5555005 + CACTA-N 987 0.8977 (2274/2533) 1 Intact Os_TE_68086 Os_TE_68082 Chr8 5552717 5552718 - DNAUN1_OS 408 0.2824 (661/2341) 0 * * Os_TE_68078 Chr8 5551267 5551266 - ORSgTEMT00502224 149 0.1836 (507/2761) 0 * * Os_TE_68067 Chr8 5549773 5549628 - TNR2A 152 0.8143 (2311/2838) 1 Intact * Os_TE_68044 Chr8 5537945 5537946 + ORSgTEMT00300064 397 0.0551 (125/2269) 0 * * Os_TE_68007 Chr8 5524158 5524396 - ORSgTETNOOT01607 258 0.8149 (2272/2788) 1 Intact * Os_TE_67933 Chr8 5490467 5490688 - ORSgTEMT00900741 219 0.8068 (2326/2883) 1 Intact * Os_TE_67916 Chr8 5485824 5485825 + TRUNCATOR 2918 0.1130 (313/2769) 0 * * Os_TE_67915 Chr8 5485795 5485794 - ORSgTEMT01602170 250 0.1725 (481/2789) 0 * Os_TE_67914 Os_TE_67914 Chr8 5485791 5485792 - ORSgTEMT01600244 239 0.0017 (4/2344) 0 * Os_TE_67915 Os_TE_67913 Chr8 5485247 5485248 - COPIA2-LTR_OS 6433 0.0060 (14/2334) 0 * Os_TE_67912 Os_TE_67912 Chr8 5485243 5485242 + COPIA2-LTR_OS 6433 0.0060 (14/2337) 0 * Os_TE_67913 Os_TE_67899 Chr8 5482588 5482587 + RIREX_LTR 8828 0.1690 (505/2988) 0 * * Os_TE_67898 Chr8 5482098 5481773 + OSTE21 1271 0.7656 (2224/2905) 1 Intact Os_TE_67893 Os_TE_67897 Chr8 5482090 5481776 + MDM2 312 0.7520 (2089/2778) 1 Intact Os_TE_67894 Os_TE_67894 Chr8 5481776 5482090 + MDM2 312 0.7654 (2180/2848) 1 Intact Os_TE_67897 Os_TE_67893 Chr8 5481768 5482092 - OSTE21 1271 0.7717 (2211/2865) 1 Intact Os_TE_67898 Os_TE_67892 Chr8 5480322 5480321 + TNR2A 152 0.0017 (5/2990) 0 * * Os_TE_67879 Chr8 5474988 5474864 - STOWAWAY30-2_OS 120 0.7296 (2121/2907) 1 Intact * Os_TE_67875 Chr8 5474775 5474774 + STOWAWAY8_OS 259 0.2149 (592/2755) 0 * * Os_TE_67872 Chr8 5474715 5474714 - SZ-46LTR 3360 0.0010 (3/2933) 0 * * Os_TE_67864 Chr8 5473376 5473377 + RETROSAT4_LTR 13504 0.0702 (146/2079) 0 * * Os_TE_67839 Chr8 5469378 5469377 + TYPEU2 382 0.0288 (64/2220) 0 * * Os_TE_67836 Chr8 5467750 5467749 + ORSgTEMT01601525 239 0.0244 (73/2997) 0 * * Os_TE_67835 Chr8 5467415 5467416 - ORSgTEMT00900099 250 0.0220 (66/2995) 0 * * Os_TE_67832 Chr8 5467226 5467225 + ORSgTEMT01600726 235 0.0221 (66/2993) 0 * * Os_TE_67831 Chr8 5467097 5467096 + NDNA1TNA_OS 334 0.0204 (61/2996) 0 * * Os_TE_67829 Chr8 5466480 5466481 + COPIA2-LTR_OS 6433 0.0214 (64/2984) 0 * * Os_TE_67818 Chr8 5464556 5464555 + COPIA2-LTR_OS 6433 0.0003 (1/2898) 0 * * Os_TE_67809 Chr8 5461022 5461023 - TREP215 239 0.0017 (5/2985) 0 * * Os_TE_67808 Chr8 5460339 5460340 + ORSgTETNOOT00908 242 0.0587 (176/2999) 0 * * Os_TE_67805 Chr8 5457526 5457525 + SZ-4_LTR 5991 0.3018 (883/2926) 0 * * Os_TE_67803 Chr8 5457334 5457335 - ORSiTETNOOT00134 607 0.0312 (89/2857) 0 * Os_TE_67802 Os_TE_67802 Chr8 5457327 5457326 + TWIF 586 0.0295 (84/2846) 0 * Os_TE_67803 Os_TE_67796 Chr8 5455436 5455437 - ORSgTETN00200001 10994 0.0317 (93/2934) 0 * Os_TE_67795 Os_TE_67795 Chr8 5455434 5455433 + SPMLIKE 10989 0.0389 (115/2957) 0 * Os_TE_67796 Os_TE_67794 Chr8 5455427 5455428 - SZ-35LTR 3853 0.0008 (2/2619) 0 * Os_TE_67793 Os_TE_67793 Chr8 5455424 5455423 + RETROSAT4_LTR 13504 0.0007 (2/2872) 0 * Os_TE_67794 Os_TE_67787 Chr8 5452885 5452884 + ORSgTERT00201346 4268 0.8916 (2672/2997) 0.95 * * Os_TE_67784 Chr8 5450523 5450524 + RETROSAT4_LTR 13504 0.0131 (39/2983) 0 * Os_TE_67783 Os_TE_67783 Chr8 5450519 5450518 - RETROSAT4_LTR 13504 0.0180 (54/2992) 0 * Os_TE_67784 Os_TE_67782 Chr8 5450117 5450118 + RETRO2_LTR 12874 0.0025 (7/2776) 0 * * Os_TE_67771 Chr8 5445801 5445800 + MUDRN2_OS 756 0.0010 (3/2968) 0 * * Os_TE_67730 Chr8 5431051 5431052 + ORSiTERT00200145 12238 0.0004 (1/2853) 0 * * Os_TE_67718 Chr8 5427412 5427413 - MPING 430 0.0003 (1/2986) 0 * Os_TE_67717 Os_TE_67717 Chr8 5427410 5427409 + MPING 430 0.0003 (1/2990) 0 * Os_TE_67718 Os_TE_67715 Chr8 5426935 5426936 - OSTE15 1168 0.5023 (1415/2817) 0 * * Os_TE_67712 Chr8 5421750 5421550 - TESS 244 0.1333 (397/2979) 1 Intact Os_TE_67711 Os_TE_67711 Chr8 5421537 5421750 + ORSgTETNOOT01084 214 0.1037 (299/2884) 1 Intact Os_TE_67712 Os_TE_67698 Chr8 5416893 5416894 - MuDR4_OS 7610 0.1699 (504/2967) 0 * Os_TE_67697 Os_TE_67697 Chr8 5416887 5416886 - MuDR4_OS 7610 0.1668 (492/2950) 0 * Os_TE_67698 Os_TE_67663 Chr8 5408608 5408609 + SPMLIKE 10989 0.0010 (3/2991) 0 * Os_TE_67662 Os_TE_67662 Chr8 5408606 5408605 - ORSgTETN00200001 10994 0.0010 (3/2986) 0 * Os_TE_67663 Os_TE_67646 Chr8 5395802 5395803 + OSTE33 1012 0.0010 (3/2987) 0 * Os_TE_67645 Os_TE_67645 Chr8 5395793 5395792 + OSTE33 1012 0.0010 (3/2987) 0 * Os_TE_67646 Os_TE_67637 Chr8 5394348 5394347 - HATOS1 3488 0.4481 (1343/2997) 0.95 * * Os_TE_67634 Chr8 5393394 5393393 + ORSgTEMT01701016 130 0.0004 (1/2825) 0 * * Os_TE_67625 Chr8 5382105 5382106 + ORSgTETNOOT01834 251 0.1954 (584/2989) 0 * Os_TE_67624 Os_TE_67624 Chr8 5382103 5382102 + ORSgTETNOOT01834 251 0.1940 (580/2989) 0 * Os_TE_67625 Os_TE_67620 Chr8 5378221 5378222 - TYPEM 227 0.0948 (280/2955) 0 * Os_TE_67619 Os_TE_67619 Chr8 5378220 5378219 - ORSgTEMT02400179 221 0.0917 (270/2944) 0 * Os_TE_67620 Os_TE_67603 Chr8 5377297 5377298 - ORSgTEMT01601208 238 0.0003 (1/2884) 0 * * Os_TE_67601 Chr8 5377125 5377126 - ORSiTERTOOT00201 3268 0.0004 (1/2759) 0 * * Os_TE_67577 Chr8 5361617 5361618 - SC-3_LTR 5748 0.0003 (1/2982) 0 * Os_TE_67576 Os_TE_67576 Chr8 5361613 5361612 + ORSiTERTOOT00296 5553 0.0003 (1/2979) 0 * Os_TE_67577 Os_TE_67568 Chr8 5359155 5359156 + ORSiTERTOOT00296 5553 0.0007 (2/2951) 0 * Os_TE_67567 Os_TE_67567 Chr8 5359151 5359150 - SC-3_LTR 5748 0.0007 (2/2962) 0 * Os_TE_67568 Os_TE_67566 Chr8 5358491 5358492 - EnSpm-N2_OS 1282 0.0003 (1/2925) 0 * * Os_TE_67554 Chr8 5349782 5349783 + DS-RICE4N 715 0.0517 (148/2862) 0 * * Os_TE_67549 Chr8 5347908 5347909 + STOWAWAY13_OS 251 0.2290 (412/1799) 0 * * Os_TE_67543 Chr8 5345857 5345858 - ORSgTEMT00900099 250 0.4346 (1259/2897) 0 * * Os_TE_67529 Chr8 5340264 5339921 - OLO24 345 0.5882 (1731/2943) 1 Intact * Os_TE_67525 Chr8 5339576 5338984 - ORSgTEMT00901288 246 0.5942 (1769/2977) 1 Intact Os_TE_67523 Os_TE_67523 Chr8 5338982 5339578 - ORSgTEMT00900099 250 0.5913 (1758/2973) 1 Intact Os_TE_67525 Os_TE_67502 Chr8 5327489 5327488 - STOWAWAY51_OS 246 0.0007 (2/2754) 0 * Os_TE_67501 Os_TE_67501 Chr8 5327483 5327484 + STOWAWAY51_OS 246 0.0007 (2/2994) 0 * Os_TE_67502 Os_TE_67432 Chr8 5289769 5289768 - COPIA2-LTR_OS 6433 0.1196 (357/2986) 0 * * Os_TE_67417 Chr8 5285938 5285939 + HATOS1 3488 0.0007 (2/2958) 0 * * Os_TE_67405 Chr8 5284041 5284040 + ORSgTEMT01601122 212 0.5707 (1575/2760) 0 * Os_TE_67404 Os_TE_67404 Chr8 5284038 5284039 - STOWAWAY46_OS 154 0.5375 (1591/2960) 0 * Os_TE_67405 Os_TE_67382 Chr8 5279445 5279584 + ORSgTEMT00502094 140 0.2325 (308/1325) 1 Intact * Os_TE_67380 Chr8 5277991 5277990 - DITTO 244 0.0012 (1/824) 0 * Os_TE_67379 Os_TE_67379 Chr8 5277990 5277991 + ORSgTEMT00901844 250 0.0012 (1/822) 0 * Os_TE_67380 Os_TE_67375 Chr8 5274156 5274155 + MDR2 6967 0.2142 (593/2768) 0 * * Os_TE_67374 Chr8 5273810 5273809 - ORSgTEMT00100363 345 0.0590 (67/1135) 0 * * Os_TE_67365 Chr8 5267829 5267955 + ORSgTEMT01701591 154 0.3437 (1029/2994) 1 Intact * Os_TE_67363 Chr8 5267660 5267533 - ORSgTEMT00501511 150 0.3465 (1030/2973) 1 Intact Os_TE_67360 Os_TE_67360 Chr8 5267529 5267658 - ORSgTEMT00502065 147 0.3455 (1033/2990) 1 Intact Os_TE_67363 Os_TE_67348 Chr8 5265686 5265687 - COPIA2-LTR_OS 6433 0.3873 (646/1668) 0 * Os_TE_67347 Os_TE_67347 Chr8 5265682 5265681 + COPIA2-LTR_OS 6433 0.6218 (1654/2660) 0 * Os_TE_67348 Os_TE_67345 Chr8 5263839 5263838 + ORSgTEMT01602181 239 0.2959 (839/2835) 0 * Os_TE_67344 Os_TE_67344 Chr8 5263836 5263837 - ORSgTEMT01601432 239 0.3079 (882/2865) 0 * Os_TE_67345 Os_TE_67343 Chr8 5263554 5263553 + STOWAWAY45_OS 266 0.4998 (1007/2015) 0 * Os_TE_67342 Os_TE_67342 Chr8 5263545 5263546 - STOWAWAY45_OS 266 0.3245 (893/2752) 0 * Os_TE_67343 Os_TE_67340 Chr8 5262552 5262553 - CLOUD 734 0.6894 (2038/2956) 0 * * Os_TE_67337 Chr8 5261845 5261844 - OSTONOR1_LTR 6440 0.0010 (3/2885) 0 * * Os_TE_67331 Chr8 5259244 5259245 - SPMLIKE 10989 0.0013 (4/2994) 0 * Os_TE_67330 Os_TE_67330 Chr8 5259243 5259242 + SPMLIKE 10989 0.0013 (4/2995) 0 * Os_TE_67331 Os_TE_67301 Chr8 5250580 5250579 - TRUNCATOR 2918 0.0013 (4/2993) 0 * * Os_TE_67300 Chr8 5250150 5250151 + SPMLIKE 10989 0.0517 (154/2981) 0 * * Os_TE_67294 Chr8 5248911 5248910 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * * Os_TE_67293 Chr8 5247927 5247928 - RETROSAT2LTR 12796 0.0003 (1/2994) 0 * * Os_TE_67284 Chr8 5244974 5244975 + MPING 430 0.0010 (3/2979) 0 * Os_TE_67283 Os_TE_67283 Chr8 5244972 5244971 - MPING 430 0.0013 (4/2973) 0 * Os_TE_67284 Os_TE_67281 Chr8 5244360 5244361 + COPIA2-LTR_OS 6433 0.0007 (2/2946) 0 * * Os_TE_67269 Chr8 5241297 5241298 + RETRO2A_LTR 12895 0.0003 (1/2987) 0 * Os_TE_67268 Os_TE_67268 Chr8 5241293 5241292 - RETRO1_LTR 8314 0.0003 (1/2989) 0 * Os_TE_67269 Os_TE_67267 Chr8 5241213 5241214 + RIREX_LTR 8828 0.0010 (3/2992) 0 * * Os_TE_67265 Chr8 5240492 5240493 + ORSgTERT00200392 431 0.0003 (1/2981) 0 * * Os_TE_67254 Chr8 5238487 5238633 + ORSgTEMT00500498 155 0.1540 (455/2954) 1 Intact * Os_TE_67252 Chr8 5238160 5238159 + ENSPM4_OS 11610 0.0007 (2/2836) 0 * * Os_TE_67244 Chr8 5237663 5237664 + ENSPM6_OS 9815 0.4876 (1297/2660) 0 * * Os_TE_67242 Chr8 5237654 5237797 + STOWAWAY47_OS 148 0.5235 (1392/2659) 1 Intact * Os_TE_67223 Chr8 5235166 5235167 + SINE1OS 127 0.0534 (157/2940) 0 * * Os_TE_67217 Chr8 5233030 5233029 + RETROSAT4_LTR 13504 0.0216 (64/2966) 0 * * Os_TE_67213 Chr8 5230109 5230110 + RIREX_LTR 8828 0.0133 (40/2997) 0 * Os_TE_67212 Os_TE_67212 Chr8 5230105 5230104 - RIREX_LTR 8828 0.0137 (41/2997) 0 * Os_TE_67213 Os_TE_67204 Chr8 5227722 5227721 - ORSgTETN00200001 10994 0.0014 (4/2956) 0 * * Os_TE_67195 Chr8 5223902 5223901 - ORSgTETN00200001 10994 0.0004 (1/2820) 0 * * Os_TE_67191 Chr8 5223354 5223355 - AMYLTP 383 0.0003 (1/2954) 0 * Os_TE_67190 Os_TE_67190 Chr8 5223346 5223345 + AMYLTP 383 0.0003 (1/2951) 0 * Os_TE_67191 Os_TE_67181 Chr8 5220013 5220014 + COPI2_LTR 4733 0.0024 (7/2929) 0 * Os_TE_67180 Os_TE_67180 Chr8 5220009 5220008 - COPI2_LTR 4733 0.0018 (5/2854) 0 * Os_TE_67181 Os_TE_67158 Chr8 5217236 5217237 + RIREX_LTR 8828 0.0003 (1/2975) 0 * Os_TE_67157 Os_TE_67157 Chr8 5217232 5217231 - RIREX_LTR 8828 0.0003 (1/2982) 0 * Os_TE_67158 Os_TE_67150 Chr8 5215753 5215752 + STOWAWAY51_OS 246 0.0143 (40/2805) 0 * Os_TE_67149 Os_TE_67149 Chr8 5215747 5215748 - STOWAWAY51_OS 246 0.0132 (37/2810) 0 * Os_TE_67150 Os_TE_67134 Chr8 5213136 5213135 + ORSgTEMT01601934 207 0.0007 (2/2872) 0 * * Os_TE_67123 Chr8 5211618 5211619 - ORSgTEMT00500512 153 0.0017 (5/2994) 0 * * Os_TE_67115 Chr8 5209516 5209515 - DNAUN1_OS 408 0.0013 (4/2981) 0 * * Os_TE_67109 Chr8 5207030 5207029 + SPMLIKE 10989 0.0010 (3/2996) 0 * * Os_TE_67108 Chr8 5206619 5195228 - ORSgTETN00200001 10994 0.1932 (577/2986) 1 Intact Os_TE_67103 Os_TE_67103 Chr8 5195228 5206619 + SPMLIKE 10989 0.1928 (576/2988) 1 Intact Os_TE_67108 Os_TE_67089 Chr8 5189761 5189760 + AMYLTP 383 0.0934 (240/2570) 0 * * Os_TE_67087 Chr8 5189166 5189167 + RIREX_LTR 8828 0.0003 (1/2996) 0 * * Os_TE_67080 Chr8 5185201 5185202 - SZ-35LTR 3853 0.1024 (306/2987) 0 * Os_TE_67079 Os_TE_67079 Chr8 5185197 5185196 + RETROSAT4_LTR 13504 0.1004 (300/2987) 0 * Os_TE_67080 Os_TE_67078 Chr8 5184093 5184094 + RIREX_LTR 8828 0.0978 (290/2965) 0 * Os_TE_67077 Os_TE_67077 Chr8 5184089 5184088 - RIREX_LTR 8828 0.0988 (293/2967) 0 * Os_TE_67078 Os_TE_67056 Chr8 5170043 5170044 - RIRE3A_LTR 10580 0.0003 (1/2881) 0 * * Os_TE_67035 Chr8 5164432 5164433 - RIREX_LTR 8828 0.0003 (1/2991) 0 * Os_TE_67034 Os_TE_67034 Chr8 5164428 5164427 + RIREX_LTR 8828 0.0003 (1/2887) 0 * Os_TE_67035 Os_TE_67033 Chr8 5164136 5164137 - ORSgTETN00200001 10994 0.0251 (75/2988) 0 * Os_TE_67032 Os_TE_67032 Chr8 5164134 5164133 + SPMLIKE 10989 0.0244 (73/2992) 0 * Os_TE_67033 Os_TE_67030 Chr8 5162435 5162436 + COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_67029 Os_TE_67029 Chr8 5162431 5162430 - COPI2_LTR 4733 0.0003 (1/2997) 0 * Os_TE_67030 Os_TE_66994 Chr8 5146661 5146662 - AMYLTP 383 0.0004 (1/2848) 0 * Os_TE_66993 Os_TE_66993 Chr8 5146653 5146652 + AMYLTP 383 0.0004 (1/2852) 0 * Os_TE_66994 Os_TE_66980 Chr8 5139269 5139270 + HARB-1_OS 5166 0.0017 (5/2890) 0 * Os_TE_66979 Os_TE_66979 Chr8 5139267 5139266 - HARB-1_OS 5166 0.0017 (5/2905) 0 * Os_TE_66980 Os_TE_66956 Chr8 5134244 5134245 - ORSgTETNOOT00908 242 0.0003 (1/2974) 0 * Os_TE_66955 Os_TE_66955 Chr8 5134242 5134241 + ORSgTETNOOT00908 242 0.0003 (1/2987) 0 * Os_TE_66956 Os_TE_66947 Chr8 5133651 5133421 + ORSgTETNOOT01219 231 0.2006 (589/2936) 1 Intact Os_TE_66946 Os_TE_66946 Chr8 5133417 5133651 + ORSgTETNOOT00908 242 0.1975 (587/2972) 1 Intact Os_TE_66947 Os_TE_66932 Chr8 5129772 5129771 + ORSgTETNOOT00908 242 0.0224 (67/2996) 0 * * Os_TE_66929 Chr8 5128214 5128213 - ORSgTEMT02400246 177 0.0230 (68/2953) 0 * Os_TE_66928 Os_TE_66928 Chr8 5128213 5128214 - TYPEM 227 0.0228 (67/2944) 0 * Os_TE_66929 Os_TE_66887 Chr8 5104798 5104797 - ORSgTEMT00900099 250 0.0017 (5/2980) 0 * * Os_TE_66870 Chr8 5100279 5100280 + MPING 430 0.0003 (1/2991) 0 * Os_TE_66869 Os_TE_66869 Chr8 5100277 5100276 - MPING 430 0.0003 (1/2993) 0 * Os_TE_66870 Os_TE_66863 Chr8 5096573 5096574 - SZ-22_LTR 4403 0.0003 (1/2991) 0 * Os_TE_66862 Os_TE_66862 Chr8 5096569 5096568 + ORSiTERTOOT00097 759 0.0003 (1/2993) 0 * Os_TE_66863 Os_TE_66849 Chr8 5094415 5083137 - RIRE2_LTR 11306 0.1143 (342/2992) 1 Intact Os_TE_66839 Os_TE_66839 Chr8 5083137 5094415 + RIRE2_LTR 11306 0.1158 (346/2988) 1 Intact Os_TE_66849 Os_TE_66836 Chr8 5081117 5081116 - ORSgTERT00201216 11284 0.0053 (13/2445) 0 * * Os_TE_66822 Chr8 5074399 5074167 - ORSgTEMT01600531 236 0.7770 (1519/1955) 1 Intact Os_TE_66819 Os_TE_66819 Chr8 5074167 5074400 - STOWAWAY51_OS 246 0.7617 (1544/2027) 1 Intact Os_TE_66822 Os_TE_66804 Chr8 5066940 5066941 - WUJI 257 0.0101 (18/1776) 0 * * Os_TE_66793 Chr8 5058585 5058137 + MuDR4_OS 7610 0.3911 (686/1754) 1 Intact * Os_TE_66783 Chr8 5056080 5056081 - TYPEM 227 0.0098 (17/1738) 0 * Os_TE_66782 Os_TE_66782 Chr8 5056079 5056078 - ORSgTEMT02400179 221 0.0046 (8/1727) 0 * Os_TE_66783 Os_TE_66774 Chr8 5054563 5054564 - RETROSAT4_LTR 13504 0.6019 (1051/1746) 0 * Os_TE_66773 Os_TE_66773 Chr8 5054559 5054558 + RETROSAT4_LTR 13504 0.5893 (1006/1707) 0.09 * Os_TE_66774 Os_TE_66765 Chr8 5049766 5049767 + NDNA1TNA_OS 334 0.0006 (1/1767) 0 * * Os_TE_66760 Chr8 5048745 5048746 + COPI2_LTR 4733 0.0006 (1/1748) 0 * Os_TE_66759 Os_TE_66759 Chr8 5048741 5048740 - COPI2_LTR 4733 0.0006 (1/1745) 0 * Os_TE_66760 Os_TE_66756 Chr8 5045110 5045111 + ORSgTETNOOT01531 255 0.0106 (18/1694) 0 * Os_TE_66755 Os_TE_66755 Chr8 5045108 5045107 + ORSgTETNOOT01998 254 0.0106 (18/1691) 0 * Os_TE_66756 Os_TE_66752 Chr8 5043218 5043219 - ORSiTERT00100062 5674 0.5217 (903/1731) 0 * * Os_TE_66733 Chr8 5037524 5037860 - OLO24 345 0.8997 (1714/1905) 1 Intact * Os_TE_66732 Chr8 5037463 5037464 + STOWAWAY13_OS 251 0.2915 (683/2343) 0 * * Os_TE_66731 Chr8 5037188 5037036 - ORSgTEMT00500773 153 0.7236 (1678/2319) -1 Intact * Os_TE_66727 Chr8 5036428 5036429 + ORSgTEMT00500260 149 0.5851 (1371/2343) 0 * * Os_TE_66724 Chr8 5035905 5036275 + TYPEU2 382 0.7065 (1644/2327) 1 Intact * Os_TE_66721 Chr8 5034793 5034604 + ORSgTEMT01601122 212 0.8856 (1130/1276) 1 Intact * Os_TE_66716 Chr8 5033610 5033609 - STOWAWAY51_OS 246 0.0662 (155/2343) 0 * Os_TE_66715 Os_TE_66715 Chr8 5033607 5033608 - STOWAWAY51_OS 246 0.0837 (158/1888) 0 * Os_TE_66716 Os_TE_66705 Chr8 5030950 5030949 + RIREX_LTR 8828 0.2736 (718/2624) 0 * * Os_TE_66691 Chr8 5027705 5027704 - TYPEM 227 0.2725 (584/2143) 0 * * Os_TE_66614 Chr8 4970175 4969901 - TRC1 306 0.5425 (511/942) 1 Intact * Os_TE_66595 Chr8 4964687 4964836 + ORSgTEMT00501299 151 0.5763 (540/937) 0.75 Intact * Os_TE_66587 Chr8 4962301 4962302 + TRUNCATOR 2918 0.0007 (1/1478) 0 * * Os_TE_66556 Chr8 4947266 4947267 - ORSiTETNOOT00216 3569 0.0006 (1/1552) 0 * Os_TE_66555 Os_TE_66555 Chr8 4947259 4947258 + TWIFBIG 3567 0.0006 (1/1555) 0 * Os_TE_66556 Os_TE_66522 Chr8 4916322 4916323 + RETROSAT2LTR 12796 0.0006 (1/1666) 0 * * Os_TE_66504 Chr8 4902795 4902796 + STOWAWAY11_OS 292 0.2116 (615/2906) 0 * * Os_TE_66501 Chr8 4900560 4900561 - TEMPINDAS 4259 0.1261 (376/2982) 0 * * Os_TE_66500 Chr8 4899684 4899685 + MPING 430 0.0050 (15/2988) 0 * Os_TE_66499 Os_TE_66499 Chr8 4899682 4899681 - MPING 430 0.0050 (15/2992) 0 * Os_TE_66500 Os_TE_66493 Chr8 4896302 4896303 - TEMPINDAS 4259 0.0004 (1/2620) 0 * * Os_TE_66484 Chr8 4894170 4894169 - ORSgTETN00200001 10994 0.0011 (1/935) 0 * * Os_TE_66481 Chr8 4892566 4892565 + ORSgTEMT01601591 242 0.0004 (1/2635) 0 * * Os_TE_66480 Chr8 4890904 4890905 - DNAUN1_OS 408 0.5440 (1516/2787) 0 * * Os_TE_66477 Chr8 4889249 4889250 - COPI2_LTR 4733 0.0009 (2/2194) 0 * * Os_TE_66458 Chr8 4883323 4883322 - ORSgTEMT00600085 364 0.2115 (569/2690) 0 * Os_TE_66457 Os_TE_66457 Chr8 4883321 4883322 + CASTAWAY 364 0.2192 (524/2391) 0 * Os_TE_66458 Os_TE_66445 Chr8 4881419 4881418 - ORSgTETN00200001 10994 0.1400 (354/2529) 0 * * Os_TE_66409 Chr8 4865349 4865350 + OsSN3 183 0.2123 (613/2887) 0 * * Os_TE_66407 Chr8 4863915 4863916 + SPMLIKE 10989 0.0085 (24/2829) 0 * * Os_TE_66402 Chr8 4862931 4862930 + ORSgTEMT01702143 140 0.5625 (1615/2871) 0 * * Os_TE_66401 Chr8 4862692 4862930 - TREP215 239 0.4797 (1359/2833) 1 Intact * Os_TE_66399 Chr8 4862461 4862462 + SPMLIKE 10989 0.1134 (324/2856) 0 * Os_TE_66398 Os_TE_66398 Chr8 4862459 4862458 - ORSgTETN00200001 10994 0.1069 (291/2721) 0 * Os_TE_66399 Os_TE_66397 Chr8 4862083 4862084 - RIREX_LTR 8828 0.0004 (1/2280) 0 * * Os_TE_66394 Chr8 4861867 4861731 + ORSgTETNOOT01930 140 0.3379 (761/2252) 1 Intact Os_TE_66392 Os_TE_66392 Chr8 4861728 4861861 - ORSgTETNOOT00118 134 0.3298 (755/2289) 1 Intact Os_TE_66394 Os_TE_66391 Chr8 4861640 4861292 - ORSgTEMT00101341 314 0.3000 (689/2297) 1 Intact Os_TE_66390 Os_TE_66390 Chr8 4861293 4861639 + NDNA2TNA_OS 346 0.3018 (695/2303) 1 Intact Os_TE_66391 Os_TE_66386 Chr8 4856871 4856872 - COPI2_LTR 4733 0.0004 (1/2856) 0 * Os_TE_66385 Os_TE_66385 Chr8 4856867 4856866 + COPI2_LTR 4733 0.0003 (1/2869) 0 * Os_TE_66386 Os_TE_66363 Chr8 4854728 4854727 - ORSgTETNOOT00727 138 0.1373 (348/2535) 0 * * Os_TE_66362 Chr8 4854593 4854594 + ORSgTETNOOT00792 273 0.0174 (44/2532) 0 * Os_TE_66361 Os_TE_66361 Chr8 4854592 4854591 - ORSgTETNOOT02156 266 0.0189 (48/2540) 0 * Os_TE_66362 Os_TE_66342 Chr8 4850117 4850116 + ORSgTEMT00901798 232 0.5186 (1199/2312) 0 * Os_TE_66341 Os_TE_66341 Chr8 4850116 4850117 + ORSgTEMT00900867 244 0.5234 (1221/2333) 0 * Os_TE_66342 Os_TE_66338 Chr8 4848603 4848264 - OLO24 345 0.3846 (996/2590) 1 Intact Os_TE_66336 Os_TE_66336 Chr8 4848259 4848602 + OLO24 345 0.4692 (1013/2159) 1 Intact Os_TE_66338 Os_TE_66277 Chr8 4783696 4783697 - SUSU 279 0.6625 (1926/2907) 0 * * Os_TE_66276 Chr8 4783421 4779676 + OSTONOR1_LTR 6440 0.3558 (1013/2847) 1 Intact * Os_TE_66270 Chr8 4781889 4781888 - SPMLIKE 10989 0.0010 (1/1022) 0 * * Os_TE_66263 Chr8 4779676 4783421 - OSTONOR1_LTR 6440 0.3548 (1019/2872) 1 Intact * Os_TE_66261 Chr8 4779615 4779614 + ORSgTEMT01602606 192 0.6519 (1856/2847) 0 * * Os_TE_66260 Chr8 4779469 4779468 + COPI2_LTR 4733 0.0003 (1/2871) 0 * * Os_TE_66259 Chr8 4778953 4778952 + ORSgTEMT01601934 207 0.1163 (327/2812) 0 * * Os_TE_66258 Chr8 4778947 4778948 + ORSgTEMT01700768 151 0.3354 (968/2886) 0 * * Os_TE_66257 Chr8 4778873 4775449 + ORSiTERTOOT00028 8600 0.1172 (339/2893) 1 Intact Os_TE_66251 Os_TE_66251 Chr8 4775449 4778873 - TRUNCATOR2_LTR 2904 0.1231 (358/2908) 1 Intact Os_TE_66257 Os_TE_66249 Chr8 4775285 4775050 - ORSgTEMT01601696 238 0.7951 (2278/2865) 1 Intact Os_TE_66248 Os_TE_66248 Chr8 4775050 4775285 - ORSgTEMT01600314 233 0.7831 (2202/2812) 1 Intact Os_TE_66249 Os_TE_66245 Chr8 4771709 4771708 + STOWAWAY51_OS 246 0.8766 (2515/2869) 0 * * Os_TE_66241 Chr8 4771527 4771528 - STOWAWAY51_OS 246 0.0004 (1/2325) 0 * * Os_TE_66225 Chr8 4768903 4768752 - ORSgTEMT00500164 149 0.7895 (2280/2888) 1 Intact * Os_TE_66222 Chr8 4768355 4768356 - ORSgTEMT00100865 348 0.2139 (637/2978) 0 * Os_TE_66221 Os_TE_66221 Chr8 4768354 4768353 + ORSgTEMT00100291 345 0.1975 (577/2921) 0 * Os_TE_66222 Os_TE_66219 Chr8 4767801 4767802 - ORSgTEMT01701314 140 0.2184 (650/2976) 0 * * Os_TE_66218 Chr8 4767721 4756306 - ORSgTETN00200001 10994 0.1180 (352/2983) 1 Intact Os_TE_66202 Os_TE_66202 Chr8 4756307 4767721 + SPMLIKE 10989 0.1206 (359/2976) 1 Intact Os_TE_66218 Os_TE_66194 Chr8 4751336 4751337 + ORSgTETNOOT01834 251 0.8260 (1999/2420) 0 * Os_TE_66193 Os_TE_66193 Chr8 4751305 4751304 + F804 170 0.8581 (2479/2889) 0 * Os_TE_66194 Os_TE_66192 Chr8 4751002 4750778 - ORSgTEMT02400246 177 0.8295 (365/440) 1 Intact Os_TE_66191 Os_TE_66191 Chr8 4750781 4750999 - TYPEM 227 0.1604 (363/2263) 1 Intact Os_TE_66192 Os_TE_66181 Chr8 4748131 4748132 + OLO24 345 0.1487 (442/2973) 0 * * Os_TE_66178 Chr8 4746948 4746947 - TYPEU1 380 0.0003 (1/2971) 0 * * Os_TE_66177 Chr8 4746905 4746667 - STOWAWAY51_OS 246 0.1415 (421/2975) 1 Intact * Os_TE_66171 Chr8 4745794 4745587 + ORSgTEMT01400031 216 0.1479 (421/2847) 1 Intact Os_TE_66166 Os_TE_66166 Chr8 4745553 4745794 - ORSgTEMT01400014 209 0.1437 (404/2812) 1 Intact Os_TE_66171 Os_TE_66146 Chr8 4731677 4731676 + ORSgTEMT00501005 147 0.2196 (628/2860) 0 * * Os_TE_66143 Chr8 4731351 4731587 + STOWAWAY9_OS 235 0.8070 (2141/2653) 1 Intact * Os_TE_66142 Chr8 4731295 4731294 - ORSgTEMT01400038 210 0.7609 (1582/2079) 0 * * Os_TE_66139 Chr8 4731141 4731140 + ORSgTEMT00500560 148 0.2131 (601/2820) 0 * * Os_TE_66138 Chr8 4731056 4731057 + ORSgTEMT01700768 151 0.0009 (1/1066) 0 * * Os_TE_66134 Chr8 4728875 4728876 + RIREX_LTR 8828 0.4847 (1411/2911) 0 * Os_TE_66133 Os_TE_66133 Chr8 4728871 4728870 - RIREX_LTR 8828 0.5934 (1420/2393) 0.04 * Os_TE_66134 Os_TE_66117 Chr8 4726847 4726846 + COPIA2-LTR_OS 6433 0.0003 (1/2897) 0 * * Os_TE_66096 Chr8 4719712 4719713 + MERMITE18E 1528 0.0004 (1/2857) 0 * * Os_TE_66090 Chr8 4714334 4714335 - OSTE28 298 0.0027 (8/2980) 0 * Os_TE_66089 Os_TE_66089 Chr8 4714326 4714325 + OSTE28 298 0.0020 (6/2980) 0 * Os_TE_66090 Os_TE_66087 Chr8 4713399 4712970 - MPING 430 0.0188 (56/2985) 1 Intact Os_TE_66086 Os_TE_66086 Chr8 4712970 4713399 + MPING 430 0.0190 (57/2994) 1 Intact Os_TE_66087 Os_TE_66083 Chr8 4709139 4709140 + TWIFBIG 3567 0.0017 (5/2966) 0 * Os_TE_66082 Os_TE_66082 Chr8 4709132 4709131 - ORSiTETNOOT00216 3569 0.0013 (4/2964) 0 * Os_TE_66083 Os_TE_66053 Chr8 4688183 4688184 + ORSiTERTOOT00296 5553 0.0017 (5/2978) 0 * Os_TE_66052 Os_TE_66052 Chr8 4688179 4688178 - SC-3_LTR 5748 0.0017 (5/2979) 0 * Os_TE_66053 Os_TE_66048 Chr8 4685070 4685071 + TELIA 141 0.0007 (2/2932) 0 * Os_TE_66047 Os_TE_66047 Chr8 4685062 4685061 - TELIA 141 0.0007 (2/2926) 0 * Os_TE_66048 Os_TE_66046 Chr8 4684930 4684931 + MDR2 6967 0.4752 (1407/2961) 0 * Os_TE_66045 Os_TE_66045 Chr8 4684923 4684922 - MDR2 6967 0.4610 (1346/2920) 0 * Os_TE_66046 Os_TE_66042 Chr8 4676159 4676160 + F804 170 0.0017 (5/2993) 0 * Os_TE_66041 Os_TE_66041 Chr8 4676151 4676150 - F804 170 0.0017 (5/2993) 0 * Os_TE_66042 Os_TE_66021 Chr8 4670324 4670323 + ORSgTETNOOT00908 242 0.0216 (64/2963) 0 * * Os_TE_66006 Chr8 4661786 4661787 + SZ-58LTR 114 0.0017 (5/2872) 0 * * Os_TE_65963 Chr8 4640786 4640787 - COPIA2-LTR_OS 6433 0.0003 (1/2984) 0 * Os_TE_65962 Os_TE_65962 Chr8 4640782 4640781 + COPIA2-LTR_OS 6433 0.0003 (1/2979) 0 * Os_TE_65963 Os_TE_65947 Chr8 4628787 4628788 - NDNA1TNA_OS 334 0.0003 (1/2990) 0 * Os_TE_65946 Os_TE_65946 Chr8 4628785 4628784 + NDNA1TNA_OS 334 0.0003 (1/2993) 0 * Os_TE_65947 Os_TE_65938 Chr8 4626830 4626831 - ORSiTEMT01300001 950 0.0104 (31/2988) 0 * * Os_TE_65937 Chr8 4626689 4626690 + RIREX_LTR 8828 0.0003 (1/2988) 0 * Os_TE_65936 Os_TE_65936 Chr8 4626685 4626684 - RIREX_LTR 8828 0.0003 (1/2953) 0 * Os_TE_65937 Os_TE_65931 Chr8 4624662 4624663 - RETRO1_LTR 8314 0.0040 (12/2974) 0 * * Os_TE_65928 Chr8 4624536 4624537 + ORSgTETNOOT00908 242 0.0007 (2/2971) 0 * Os_TE_65927 Os_TE_65927 Chr8 4624529 4624528 + ORSgTETNOOT01219 231 0.0007 (2/2969) 0 * Os_TE_65928 Os_TE_65918 Chr8 4620971 4620972 - DS-RICE2N 613 0.0042 (12/2855) 0 * Os_TE_65917 Os_TE_65917 Chr8 4620964 4620963 + DS-RICE4N 715 0.0038 (11/2911) 0 * Os_TE_65918 Os_TE_65913 Chr8 4620471 4620470 + ORSgTEMT01400012 212 0.5157 (804/1559) 0 * * Os_TE_65909 Chr8 4616531 4616530 - ORSgTEMT02400246 177 0.0144 (42/2925) 0 * * Os_TE_65895 Chr8 4610095 4610096 - MPING 430 0.0003 (1/2991) 0 * Os_TE_65894 Os_TE_65894 Chr8 4610093 4610092 + MPING 430 0.0003 (1/2972) 0 * Os_TE_65895 Os_TE_65860 Chr8 4594297 4594298 + TRUNCATOR2_LTR 2904 0.0149 (41/2757) 0 * Os_TE_65859 Os_TE_65859 Chr8 4594293 4594292 - TRUNCATOR2_LTR 2904 0.0160 (44/2755) 0 * Os_TE_65860 Os_TE_65818 Chr8 4570672 4570671 + RIRE2_LTR 11306 0.0068 (20/2955) 0 * * Os_TE_65817 Chr8 4570257 4570258 - MERMITED 1572 0.0034 (10/2918) 0 * Os_TE_65816 Os_TE_65816 Chr8 4570255 4570254 - MERMITED 1572 0.0034 (10/2931) 0 * Os_TE_65817 Os_TE_65812 Chr8 4566632 4566631 + DITTO 244 0.0010 (3/2992) 0 * * Os_TE_65795 Chr8 4559963 4559964 - RETROSAT2LTR 12796 0.0010 (3/2863) 0 * * Os_TE_65777 Chr8 4550768 4550767 + TWIF 586 0.0003 (1/2923) 0 * * Os_TE_65758 Chr8 4542971 4542970 - STOWAWAY46_OS 154 0.0003 (1/2991) 0 * * Os_TE_65743 Chr8 4538656 4538655 + TWIF 586 0.0005 (1/2082) 0 * * Os_TE_65737 Chr8 4528846 4528845 - TYPEM 227 0.0007 (2/2990) 0 * Os_TE_65736 Os_TE_65736 Chr8 4528845 4528846 - ORSgTEMT02400246 177 0.0007 (2/2987) 0 * Os_TE_65737 Os_TE_65725 Chr8 4522290 4522289 + EXPLORER 210 0.0003 (1/2894) 0 * * Os_TE_65713 Chr8 4518971 4518972 - RIREX_LTR 8828 0.0064 (19/2974) 0 * * Os_TE_65707 Chr8 4516611 4516612 - ORSgTEMT02400179 221 0.0178 (51/2859) 0 * Os_TE_65706 Os_TE_65706 Chr8 4516610 4516609 - TYPEM 227 0.0168 (48/2852) 0 * Os_TE_65707 Os_TE_65701 Chr8 4512167 4512168 - COPI2_LTR 4733 0.0003 (1/2993) 0 * Os_TE_65700 Os_TE_65700 Chr8 4512163 4512162 + COPI2_LTR 4733 0.0003 (1/2997) 0 * Os_TE_65701 Os_TE_65698 Chr8 4511582 4511583 + ID-4 284 0.0014 (4/2954) 0 * Os_TE_65697 Os_TE_65697 Chr8 4511580 4511579 + ORSgTEMT04600010 284 0.0017 (5/2966) 0 * Os_TE_65698 Os_TE_65693 Chr8 4509784 4509785 + COPI2_LTR 4733 0.0003 (1/2988) 0 * Os_TE_65692 Os_TE_65692 Chr8 4509780 4509779 - COPI2_LTR 4733 0.0003 (1/2984) 0 * Os_TE_65693 Os_TE_65688 Chr8 4507498 4507499 - RIREX_LTR 8828 0.0010 (3/2954) 0 * Os_TE_65687 Os_TE_65687 Chr8 4507494 4507493 + RIREX_LTR 8828 0.0010 (3/2939) 0 * Os_TE_65688 Os_TE_65685 Chr8 4506615 4506614 + COPI2_LTR 4733 0.0003 (1/2950) 0 * * Os_TE_65663 Chr8 4496374 4496373 + TELIA 141 0.0003 (1/2991) 0 * * Os_TE_65653 Chr8 4494415 4494416 - SZ-5LTR 1223 0.0017 (5/2976) 0 * Os_TE_65652 Os_TE_65652 Chr8 4494411 4494410 + SZ-30_LTR 6377 0.0017 (5/2971) 0 * Os_TE_65653 Os_TE_65643 Chr8 4489870 4489871 - TOS17LTR 138 0.0043 (13/2992) 0 * Os_TE_65642 Os_TE_65642 Chr8 4489866 4489865 + TOS17LTR 138 0.0047 (14/2995) 0 * Os_TE_65643 Os_TE_65640 Chr8 4486993 4486992 + ORSgTEMT00502025 149 0.0017 (5/2964) 0 * Os_TE_65639 Os_TE_65639 Chr8 4486992 4486993 - GAIJIN 147 0.0017 (5/2973) 0 * Os_TE_65640 Os_TE_65632 Chr8 4479624 4479625 + SZ-40LTR 2465 0.0043 (4/941) 0 * Os_TE_65631 Os_TE_65631 Chr8 4479620 4479619 - GYPSY-A_LTR 8951 0.0043 (4/935) 0 * Os_TE_65632 Os_TE_65624 Chr8 4477742 4477910 - OsSN3 183 0.6833 (874/1279) 1 Intact * Os_TE_65587 Chr8 4467532 4467531 + NDNA1TNA_OS 334 0.0100 (9/900) 0 * * Os_TE_65574 Chr8 4461847 4461848 + MuDR4_OS 7610 0.0065 (6/919) 0 * * Os_TE_65572 Chr8 4457806 4457807 - COPIA2-LTR_OS 6433 0.0011 (1/927) 0 * Os_TE_65571 Os_TE_65571 Chr8 4457802 4457801 + COPIA2-LTR_OS 6433 0.0011 (1/923) 0 * Os_TE_65572 Os_TE_65559 Chr8 4449322 4449569 + ORSgTEMT00901844 250 0.8437 (912/1081) 1 Intact * Os_TE_65556 Chr8 4449277 4449276 + MPING 430 0.0011 (1/941) 0 * * Os_TE_65555 Chr8 4449028 4449029 - TEOS1 476 0.0361 (34/941) 0 * * Os_TE_65526 Chr8 4433352 4433353 - SC-3_LTR 5748 0.0003 (1/2996) 0 * Os_TE_65525 Os_TE_65525 Chr8 4433348 4433347 + ORSiTERTOOT00296 5553 0.0003 (1/2996) 0 * Os_TE_65526 Os_TE_65524 Chr8 4432686 4432687 - SC-3_LTR 5748 0.0121 (36/2986) 0 * Os_TE_65523 Os_TE_65523 Chr8 4432682 4432681 + ORSiTERTOOT00296 5553 0.0118 (35/2957) 0 * Os_TE_65524 Os_TE_65511 Chr8 4430240 4424801 + OSCOPIA2_LTR 5476 0.2912 (864/2967) 1 Intact Os_TE_65509 Os_TE_65509 Chr8 4424801 4430240 - OSCOPIA2_LTR 5476 0.2949 (876/2971) 1 Intact Os_TE_65511 Os_TE_65507 Chr8 4423598 4423599 - SZ-67LTR 1540 0.0007 (2/2906) 0 * Os_TE_65506 Os_TE_65506 Chr8 4423594 4423593 + ORSiTERT00200145 12238 0.0007 (2/2983) 0 * Os_TE_65507 Os_TE_65454 Chr8 4405827 4406074 + ORSgTEMT00900471 260 0.5223 (915/1752) 1 Intact * Os_TE_65431 Chr8 4390863 4390655 + ORSgTETNOOT00072 203 0.2127 (636/2990) 1 Intact Os_TE_65430 Os_TE_65430 Chr8 4390646 4390857 + ORSgTETNOOT01028 232 0.2097 (624/2976) 1 Intact Os_TE_65431 Os_TE_65384 Chr8 4370728 4370729 + ORSgTEMT01602051 240 0.6138 (1427/2325) 0 * * Os_TE_65379 Chr8 4369321 4369320 + NDNA1TNA_OS 334 0.5327 (1563/2934) 0 * * Os_TE_65378 Chr8 4369136 4369137 - TESS 244 0.6975 (2029/2909) 0 * * Os_TE_65358 Chr8 4358628 4358629 + STOWAWAY51_OS 246 0.0003 (1/2981) 0 * * Os_TE_65324 Chr8 4342786 4342787 + ORSgTEMT01700791 134 0.0024 (7/2934) 0 * * Os_TE_65313 Chr8 4341674 4341675 - STOWAWAY11_OS 292 0.0031 (9/2911) 0 * Os_TE_65312 Os_TE_65312 Chr8 4341673 4341672 + STOWAWAY11_OS 292 0.0027 (8/2918) 0 * Os_TE_65313 Os_TE_65300 Chr8 4339729 4339730 - SZ-35LTR 3853 0.7075 (2087/2950) -1 * Os_TE_65299 Os_TE_65299 Chr8 4339725 4339724 + RETROSAT4_LTR 13504 0.6830 (1894/2773) -1 * Os_TE_65300 Os_TE_65283 Chr8 4331790 4331789 - RIREX_LTR 8828 0.0057 (17/2989) 0 * * Os_TE_65280 Chr8 4330973 4330972 - TRUNCATOR 2918 0.5726 (1518/2651) 0 * Os_TE_65279 Os_TE_65279 Chr8 4330972 4330973 + TRUNCATOR 2918 0.5782 (1568/2712) 0 * Os_TE_65280 Os_TE_65257 Chr8 4321754 4321755 - RIREX_LTR 8828 0.0047 (14/2952) 0 * Os_TE_65256 Os_TE_65256 Chr8 4321750 4321749 + RIREX_LTR 8828 0.0050 (15/2972) 0 * Os_TE_65257 Os_TE_65254 Chr8 4321694 4320177 + RPO_OS 1983 0.2426 (721/2972) 1 Intact Os_TE_65251 Os_TE_65251 Chr8 4320177 4321694 - RPO_OS 1983 0.2414 (719/2979) 1 Intact Os_TE_65254 Os_TE_65247 Chr8 4319118 4319117 + STOWAWAY1_OS 149 0.7850 (2220/2828) 0 * * Os_TE_65244 Chr8 4318675 4318676 - ORSiTERT00100079 4922 0.7841 (2179/2779) 0 * * Os_TE_65234 Chr8 4313732 4313993 - ORSgTEMT00101174 225 0.2412 (699/2898) 1 Intact * Os_TE_65231 Chr8 4311913 4311914 + COPIA2-LTR_OS 6433 0.0007 (2/2998) 0 * Os_TE_65230 Os_TE_65230 Chr8 4311909 4311908 - COPIA2-LTR_OS 6433 0.0007 (2/2998) 0 * Os_TE_65231 Os_TE_65229 Chr8 4311370 4311155 + ORSgTEMT01602669 216 0.2481 (742/2991) 1 Intact Os_TE_65226 Os_TE_65226 Chr8 4311155 4311370 + ORSgTEMT01601525 239 0.2497 (741/2968) 1 Intact Os_TE_65229 Os_TE_65219 Chr8 4306958 4306959 + ORSgTETNOOT00908 242 0.1378 (411/2983) 0 * Os_TE_65218 Os_TE_65218 Chr8 4306953 4306952 + ORSgTETNOOT01219 231 0.1371 (408/2977) 0 * Os_TE_65219 Os_TE_65203 Chr8 4299461 4299462 - SZ-5LTR 1223 0.0142 (39/2747) 0 * Os_TE_65202 Os_TE_65202 Chr8 4299457 4299456 + COPIA1-LTR_OS 9292 0.0138 (41/2977) 0 * Os_TE_65203 Os_TE_65189 Chr8 4296318 4296319 + SPMLIKE 10989 0.0720 (214/2973) 0 * Os_TE_65188 Os_TE_65188 Chr8 4296316 4296315 - ORSgTETN00200001 10994 0.0737 (219/2972) 0 * Os_TE_65189 Os_TE_65181 Chr8 4294749 4294750 + MUDR_N7_OS 1283 0.0004 (1/2287) 0 * * Os_TE_65179 Chr8 4292861 4292862 - RETRO1_LTR 8314 0.0003 (1/2988) 0 * * Os_TE_65152 Chr8 4281605 4281606 + AMYLTP 383 0.0027 (8/2943) 0 * Os_TE_65151 Os_TE_65151 Chr8 4281597 4281596 - AMYLTP 383 0.0024 (7/2952) 0 * Os_TE_65152 Os_TE_65149 Chr8 4278334 4278335 - OSTE24 683 0.0043 (13/2997) 0 * * Os_TE_65124 Chr8 4267224 4267223 + ORSgTEMT02000018 177 0.0024 (7/2951) 0 * * Os_TE_65123 Chr8 4266700 4266699 - ORSgTEMT01600639 228 0.0030 (9/2987) 0 * * Os_TE_65092 Chr8 4260518 4260519 + RETRO2A_LTR 12895 0.3078 (165/536) -1 * * Os_TE_65028 Chr8 4230863 4230864 - MPING 430 0.0007 (2/2878) 0 * Os_TE_65027 Os_TE_65027 Chr8 4230861 4230860 + MPING 430 0.0007 (2/2877) 0 * Os_TE_65028 Os_TE_65025 Chr8 4230443 4230116 - NDNA2TNA_OS 346 0.3495 (953/2727) 1 Intact * Os_TE_64988 Chr8 4225426 4225427 - AMYLTP 383 0.0017 (5/2923) 0 * Os_TE_64987 Os_TE_64987 Chr8 4225418 4225417 + AMYLTP 383 0.0017 (5/2934) 0 * Os_TE_64988 Os_TE_64973 Chr8 4220363 4220364 + COPIA2-LTR_OS 6433 0.0003 (1/2887) 0 * * Os_TE_64930 Chr8 4209988 4209989 + ORSgTEMT01601591 242 0.0007 (2/2891) 0 * * Os_TE_64929 Chr8 4209334 4209335 - ORSgTETNOOT02044 254 0.0219 (56/2552) 0 * * Os_TE_64928 Chr8 4209325 4209326 + ORSgTETNOOT00908 242 0.5761 (1499/2602) 0 * Os_TE_64927 Os_TE_64927 Chr8 4209323 4209322 + ORSgTETNOOT02019 240 0.6309 (1824/2891) 0 * Os_TE_64928 Os_TE_64925 Chr8 4209085 4209086 + NDNA1TNA_OS 334 0.0047 (14/2990) 0 * Os_TE_64924 Os_TE_64924 Chr8 4209083 4209082 - NDNA1TNA_OS 334 0.0050 (15/2991) 0 * Os_TE_64925 Os_TE_64919 Chr8 4206042 4206043 - ORSgTETN00200001 10994 0.0007 (2/2950) 0 * Os_TE_64918 Os_TE_64918 Chr8 4206040 4206039 + SPMLIKE 10989 0.0007 (2/2946) 0 * Os_TE_64919 Os_TE_64897 Chr8 4198212 4198213 - SC-7_LTR 4431 0.3077 (917/2980) 0 * * Os_TE_64891 Chr8 4192838 4192839 + SC-8_LTR 4951 0.0003 (1/2989) 0 * Os_TE_64890 Os_TE_64890 Chr8 4192834 4192833 - SC-8_LTR 4951 0.0003 (1/2983) 0 * Os_TE_64891 Os_TE_64887 Chr8 4191788 4191789 + ORSgTEMT00600376 329 0.0031 (9/2945) 0 * Os_TE_64886 Os_TE_64886 Chr8 4191783 4191782 + ORSgTEMT00600272 361 0.0031 (9/2943) 0 * Os_TE_64887 Os_TE_64882 Chr8 4191698 4191697 + SEVERIN-2 1952 0.3060 (908/2967) 0 * * Os_TE_64867 Chr8 4180788 4180787 - ORSgTETNOOT02565 240 0.1731 (506/2924) 0 * * Os_TE_64852 Chr8 4171062 4158148 + RETRO1_LTR 8314 0.3695 (1073/2904) 1 Intact Os_TE_64847 Os_TE_64847 Chr8 4158147 4171062 - RETRO1_LTR 8314 0.3515 (995/2831) 1 Intact Os_TE_64852 Os_TE_64846 Chr8 4155861 4155862 - SC-3_LTR 5748 0.0003 (1/2993) 0 * * Os_TE_64842 Chr8 4152311 4152312 + ORSgTETNOOT00908 242 0.0044 (13/2967) 0 * Os_TE_64841 Os_TE_64841 Chr8 4152309 4152308 + ORSgTETNOOT00012 241 0.0045 (13/2919) 0 * Os_TE_64842 Os_TE_64821 Chr8 4145063 4145064 + ORSiTERTOOT00028 8600 0.0007 (2/2982) 0 * * Os_TE_64817 Chr8 4143341 4143340 - RIRE3A_LTR 10580 0.0017 (5/2980) 0 * * Os_TE_64807 Chr8 4139002 4139003 - RIREX_LTR 8828 0.0003 (1/2935) 0 * * Os_TE_64793 Chr8 4132541 4131041 + ATLANTYS-LTR_OS 13740 0.8135 (1418/1743) 1 Solo_LTR * Os_TE_64784 Chr8 4129935 4129934 - ORSgTEMT00100956 337 0.0007 (1/1417) 0 * * Os_TE_64783 Chr8 4129573 4129574 - CLOUD 734 0.0009 (2/2294) 0 * * Os_TE_64761 Chr8 4114830 4114831 + RETRO2A_LTR 12895 0.0064 (15/2343) 0 * * Os_TE_64758 Chr8 4114469 4114468 - RIRE2_LTR 11306 0.0059 (14/2365) 0 * * Os_TE_64756 Chr8 4114460 4114459 + COPI2_LTR 4733 0.0004 (1/2353) 0 * * Os_TE_64748 Chr8 4110419 4110418 - ORSgTEMT01400014 209 0.0030 (4/1333) 0 * * Os_TE_64739 Chr8 4105393 4105392 - NDNA1TNA_OS 334 0.0060 (14/2332) 0 * * Os_TE_64727 Chr8 4100667 4100668 + RETROSAT4_LTR 13504 0.5409 (1277/2361) 0 * * Os_TE_64717 Chr8 4099443 4099208 + ORSgTEMT00901179 250 0.7907 (2308/2919) 1 Intact Os_TE_64711 Os_TE_64711 Chr8 4099204 4099443 + ORSgTEMT00901138 254 0.7897 (2362/2991) 1 Intact Os_TE_64717 Os_TE_64697 Chr8 4095679 4095346 + NDNA1TNA_OS 334 0.3592 (1069/2976) 1 Intact * Os_TE_64692 Chr8 4094085 4093854 + ORSgTEMT01601018 231 0.5904 (1568/2656) 1 Intact * Os_TE_64690 Chr8 4093433 4093434 + ENSPM4_OS 11610 0.0048 (14/2915) 0 * * Os_TE_64681 Chr8 4090904 4090905 - NDNA2TNA_OS 346 0.1446 (430/2973) 0 * Os_TE_64680 Os_TE_64680 Chr8 4090902 4090901 + NDNA2TNA_OS 346 0.1433 (427/2980) 0 * Os_TE_64681 Os_TE_64675 Chr8 4090316 4090317 - TNR12 528 0.0020 (6/2950) 0 * Os_TE_64674 Os_TE_64674 Chr8 4090308 4090307 - TNR12 528 0.0017 (5/2954) 0 * Os_TE_64675 Os_TE_64673 Chr8 4089921 4089920 + ORSgTEMT01601122 212 0.0017 (5/2938) 0 * * Os_TE_64665 Chr8 4089381 4089380 + ORSiTERTOOT00074 4935 0.3924 (1158/2951) 0 * * Os_TE_64662 Chr8 4088768 4088767 - OSLINE1-2 7128 0.0050 (15/2982) 0 * * Os_TE_64658 Chr8 4082749 4082750 - SC-3_LTR 5748 0.0013 (4/2995) 0 * * Os_TE_64653 Chr8 4078985 4078984 - ORSiTERTOOT00271 11428 0.0004 (1/2246) 0 * * Os_TE_64643 Chr8 4067469 4067470 + OSTE33 1012 0.3708 (1096/2956) 0 * Os_TE_64642 Os_TE_64642 Chr8 4067460 4067459 + OSTE33 1012 0.3710 (1097/2957) 0 * Os_TE_64643 Os_TE_64640 Chr8 4065393 4065394 + TWIF 586 0.0047 (14/2984) 0 * Os_TE_64639 Os_TE_64639 Chr8 4065386 4065385 - ORSiTETNOOT00134 607 0.0037 (11/2981) 0 * Os_TE_64640 Os_TE_64637 Chr8 4064764 4064765 - SZ-35LTR 3853 0.0180 (53/2946) 0 * Os_TE_64636 Os_TE_64636 Chr8 4064760 4064759 + RETROSAT4_LTR 13504 0.0132 (38/2889) 0 * Os_TE_64637 Os_TE_64635 Chr8 4063825 4063824 - ORSgTETN00400008 386 0.0017 (5/2986) 0 * * Os_TE_64626 Chr8 4061179 4061180 - ORSgTETN00200001 10994 0.0034 (10/2964) 0 * * Os_TE_64622 Chr8 4058656 4058657 + SZ-9LTR 965 0.0130 (38/2926) 0 * Os_TE_64621 Os_TE_64621 Chr8 4058652 4058651 - SZ-9LTR 965 0.0140 (41/2920) 0 * Os_TE_64622 Os_TE_64615 Chr8 4054862 4054863 - COPI1_LTR 4721 0.0020 (5/2532) 0 * * Os_TE_64614 Chr8 4054804 4054805 - BAJIELTR 4500 0.0433 (110/2540) 0 * * Os_TE_64609 Chr8 4052346 4052488 - TNR2A 152 0.8066 (1126/1396) 1 Intact * Os_TE_64596 Chr8 4049558 4049557 + ORSiTERTOOT00097 759 0.0003 (1/2975) 0 * * Os_TE_64594 Chr8 4048696 4048697 + SPMLIKE 10989 0.0033 (10/2988) 0 * * Os_TE_64562 Chr8 4023186 4033776 - ORSgTERT00201216 11284 0.3967 (1117/2816) 1 Intact * Os_TE_64558 Chr8 4021796 4021797 + ORSgTEMT00500095 150 0.6367 (1877/2948) 0 * Os_TE_64557 Os_TE_64557 Chr8 4021795 4021794 + ORSgTETNOOT01275 140 0.6397 (1875/2931) 0 * Os_TE_64558 Os_TE_64545 Chr8 4014706 4014944 + ORSgTEMT01601122 212 0.5808 (1643/2829) 1 Intact * Os_TE_64536 Chr8 4011128 4011129 - CACTA-P 1150 0.6194 (1790/2890) 0 * * Os_TE_64526 Chr8 4004973 3989105 + TRUNCATOR2_LTR 2904 0.3655 (1090/2982) 1 Intact Os_TE_64516 Os_TE_64516 Chr8 3989105 4004973 - TRUNCATOR2_LTR 2904 0.3681 (1102/2994) 1 Intact Os_TE_64526 Os_TE_64509 Chr8 3983853 3983854 + ORSgTETNOOT00908 242 0.0341 (102/2991) 0 * * Os_TE_64505 Chr8 3982737 3982738 + RIRE2_LTR 11306 0.0014 (4/2898) 0 * Os_TE_64504 Os_TE_64504 Chr8 3982733 3982732 - RIRE2_LTR 11306 0.0020 (6/2987) 0 * Os_TE_64505 Os_TE_64503 Chr8 3982662 3982663 - RETROSAT4_LTR 13504 0.0033 (10/2987) 0 * Os_TE_64502 Os_TE_64502 Chr8 3982658 3982657 + RETROSAT4_LTR 13504 0.0030 (9/2990) 0 * Os_TE_64503 Os_TE_64500 Chr8 3982585 3982586 - Cassandra_OS-LTR 764 0.2524 (728/2884) 0 * Os_TE_64499 Os_TE_64499 Chr8 3982581 3982580 + Cassandra_OS-LTR 764 0.2857 (852/2982) 0 * Os_TE_64500 Os_TE_64492 Chr8 3981624 3981625 + ENSPM3_OS 10837 0.0350 (104/2973) 0 * * Os_TE_64471 Chr8 3971168 3971169 - ORSgTEMT01600477 233 0.0017 (5/2966) 0 * * Os_TE_64470 Chr8 3970914 3970915 - TRUNCATOR2_LTR 2904 0.0188 (56/2983) 0 * Os_TE_64469 Os_TE_64469 Chr8 3970910 3970909 + ORSiCMCM00100019 2717 0.0174 (52/2980) 0 * Os_TE_64470 Os_TE_64448 Chr8 3963339 3963338 + RETRO2A_LTR 12895 0.0182 (54/2963) 0 * * Os_TE_64447 Chr8 3962794 3962793 + RETRO2A_LTR 12895 0.0003 (1/2964) 0 * * Os_TE_64446 Chr8 3962560 3962561 + TYPEU1 380 0.0034 (10/2941) 0 * * Os_TE_64409 Chr8 3952352 3952351 + AMYLTP 383 0.0017 (5/2994) 0 * * Os_TE_64406 Chr8 3947784 3947785 + SPMLIKE 10989 0.0537 (160/2978) 0 * Os_TE_64405 Os_TE_64405 Chr8 3947782 3947781 - ORSgTETN00200001 10994 0.0568 (170/2992) 0 * Os_TE_64406 Os_TE_64393 Chr8 3940495 3940496 + RETROSAT4_LTR 13504 0.0391 (43/1101) 0 * * Os_TE_64392 Chr8 3940491 3940490 - SZ-35LTR 3853 0.0557 (167/2996) 0 * * Os_TE_64391 Chr8 3940135 3940136 + RETRO2_LTR 12874 0.0560 (168/2998) 0 * Os_TE_64390 Os_TE_64390 Chr8 3940131 3940130 - RETRO2_LTR 12874 0.0554 (166/2995) 0 * Os_TE_64391 Os_TE_64389 Chr8 3939218 3939219 + GYPSY-A_LTR 8951 0.0309 (45/1457) 0 * * Os_TE_64387 Chr8 3938352 3938353 - RIRE2_LTR 11306 0.0184 (55/2994) 0 * * Os_TE_64376 Chr8 3933846 3933847 + RIREX_LTR 8828 0.0003 (1/2974) 0 * Os_TE_64375 Os_TE_64375 Chr8 3933842 3933841 - RIREX_LTR 8828 0.0003 (1/2981) 0 * Os_TE_64376 Os_TE_64364 Chr8 3927423 3927424 + INDITTO 263 0.0017 (5/2933) 0 * Os_TE_64363 Os_TE_64363 Chr8 3927422 3927421 - INDITTO 263 0.0017 (5/2917) 0 * Os_TE_64364 Os_TE_64318 Chr8 3914924 3914925 - EnSpm-10_OS 11265 0.0003 (1/2945) 0 * Os_TE_64317 Os_TE_64317 Chr8 3914922 3914921 + EnSpm-10_OS 11265 0.0003 (1/2928) 0 * Os_TE_64318 Os_TE_64316 Chr8 3914844 3914845 + WUWU 113 0.0017 (5/2966) 0 * Os_TE_64315 Os_TE_64315 Chr8 3914836 3914835 + WUWU 113 0.0013 (4/2967) 0 * Os_TE_64316 Os_TE_64312 Chr8 3913534 3893076 + TRUNCATOR 2918 0.1029 (225/2187) 1 Intact Os_TE_64303 Os_TE_64303 Chr8 3893071 3913534 - TRUNCATOR 2918 0.1026 (224/2183) 1 Intact Os_TE_64312 Os_TE_64300 Chr8 3892087 3892088 + RETROSAT4_LTR 13504 0.5642 (1679/2976) 0 * * Os_TE_64279 Chr8 3872790 3872789 - STOWAWAY51_OS 246 0.3265 (943/2888) 0 * Os_TE_64278 Os_TE_64278 Chr8 3872787 3872788 - STOWAWAY51_OS 246 0.3196 (921/2882) 0 * Os_TE_64279 Os_TE_64277 Chr8 3872673 3872360 + CASTAWAY-3 314 0.1108 (215/1941) 1 Intact Os_TE_64276 Os_TE_64276 Chr8 3872360 3872671 - CASTAWAY-3 314 0.0950 (189/1990) 1 Intact Os_TE_64277 Os_TE_64271 Chr8 3871190 3871191 + STOWAWAY21_OS 243 0.3103 (916/2952) 0 * * Os_TE_64270 Chr8 3870884 3870885 + RETRO1_LTR 8314 0.0003 (1/2932) 0 * * Os_TE_64261 Chr8 3868203 3868204 + CACTA-B 1103 0.2954 (873/2955) 0 * * Os_TE_64259 Chr8 3867922 3867675 - DITTO-2 235 0.7106 (2094/2947) 1 Intact Os_TE_64255 Os_TE_64255 Chr8 3867675 3867910 + DITTO-2 235 0.7132 (2084/2922) 1 Intact Os_TE_64259 Os_TE_64246 Chr8 3862316 3862315 - SZ-55_LTR 10318 0.0142 (42/2961) 0 * * Os_TE_64231 Chr8 3857464 3857463 + ORSgTEMT01700012 149 0.0174 (52/2989) 0 * * Os_TE_64230 Chr8 3857461 3857462 + ORSgTEMT01702158 154 0.0174 (52/2989) 0 * Os_TE_64229 Os_TE_64229 Chr8 3857458 3857457 - ORSgTEMT01701663 106 0.0171 (51/2988) 0 * Os_TE_64230 Os_TE_64211 Chr8 3845885 3845884 - ORSiTERTOOT00402 2660 0.0003 (1/2994) 0 * * Os_TE_64204 Chr8 3838646 3838645 - ORSgTEMT02400246 177 0.5780 (1720/2976) 0 * * Os_TE_64150 Chr8 3822116 3822117 - CRM-LTR_OS 7749 0.0003 (1/2983) 0 * * Os_TE_64143 Chr8 3818622 3818623 + RIREX_LTR 8828 0.0007 (2/2950) 0 * * Os_TE_64121 Chr8 3800097 3800096 - ORSgTEMT00100124 360 0.1270 (379/2985) 0 * Os_TE_64120 Os_TE_64120 Chr8 3800096 3800097 + NDNA1TNA_OS 334 0.1295 (388/2997) 0 * Os_TE_64121 Os_TE_64106 Chr8 3784049 3783825 - ORSgTEMT00901723 248 0.7860 (1087/1383) 1 Intact Os_TE_64100 Os_TE_64100 Chr8 3783822 3784047 + ORSgTEMT00900079 241 0.4111 (1078/2622) 1 Intact Os_TE_64106 Os_TE_64098 Chr8 3783613 3783614 + SZ-62LTR 3649 0.0074 (22/2983) 0 * Os_TE_64097 Os_TE_64097 Chr8 3783609 3783608 - SZ-62LTR 3649 0.0196 (22/1123) 0 * Os_TE_64098 Os_TE_64096 Chr8 3783453 3783454 - ORSgTERT00201216 11284 0.0010 (3/2953) 0 * Os_TE_64095 Os_TE_64095 Chr8 3783449 3783448 - RIRE2_LTR 11306 0.0007 (2/2930) 0 * Os_TE_64096 Os_TE_64094 Chr8 3783393 3783394 - ORSiTETNOOT00200 3563 0.0292 (84/2879) 0 * Os_TE_64093 Os_TE_64093 Chr8 3783386 3783385 + TWIF 586 0.0524 (153/2920) 0 * Os_TE_64094 Os_TE_64090 Chr8 3782433 3782432 + ORSiTERTOOT00088 856 0.6208 (1665/2682) 0 * * Os_TE_64059 Chr8 3771273 3771272 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * * Os_TE_64049 Chr8 3766016 3766017 - ORSgTEMT01601208 238 0.0003 (1/2998) 0 * * Os_TE_64013 Chr8 3752552 3752553 - RETROSAT4_LTR 13504 0.0003 (1/2984) 0 * * Os_TE_63998 Chr8 3749708 3749707 - INDITTO 263 0.0181 (54/2987) 0 * * Os_TE_63989 Chr8 3743606 3743607 - SC-5 3770 0.0023 (7/2985) 0 * * Os_TE_63987 Chr8 3743516 3743517 - AMYLTP 383 0.0020 (6/2991) 0 * Os_TE_63986 Os_TE_63986 Chr8 3743508 3743507 + AMYLTP 383 0.0017 (5/2991) 0 * Os_TE_63987 Os_TE_63971 Chr8 3738065 3738064 + CACTA-I 1124 0.0003 (1/2958) 0 * * Os_TE_63969 Chr8 3737907 3737908 + HARB-1_OS 5166 0.0003 (1/2965) 0 * Os_TE_63968 Os_TE_63968 Chr8 3737905 3737904 - HARB-1_OS 5166 0.0003 (1/2964) 0 * Os_TE_63969 Os_TE_63957 Chr8 3730104 3730105 + SPMLIKE 10989 0.2895 (857/2960) 0 * Os_TE_63956 Os_TE_63956 Chr8 3730102 3730101 - ORSgTETN00200001 10994 0.2400 (675/2812) 0 * Os_TE_63957 Os_TE_63954 Chr8 3728830 3728831 + TWIF 586 0.0003 (1/2942) 0 * * Os_TE_63938 Chr8 3719792 3707577 - RETRO2_LTR 12874 0.3520 (1052/2989) 1 Intact * Os_TE_63924 Chr8 3706730 3719297 + RETRO2_LTR 12874 0.3441 (1023/2973) 1 Intact * Os_TE_63898 Chr8 3700599 3700600 - INDITTO 263 0.0077 (23/2980) 0 * * Os_TE_63840 Chr8 3664398 3663842 - MuDR4_OS 7610 0.3462 (1023/2955) 1 Intact Os_TE_63839 Os_TE_63839 Chr8 3663841 3664398 + MuDR4_OS 7610 0.3503 (1032/2946) 1 Intact Os_TE_63840 Os_TE_63838 Chr8 3663104 3663105 + ORSgTETNOOT00908 242 0.0003 (1/2963) 0 * * Os_TE_63832 Chr8 3661978 3661979 - SZ-40LTR 2465 0.0090 (27/2995) 0 * Os_TE_63831 Os_TE_63831 Chr8 3661974 3661973 + GYPSY-A_LTR 8951 0.0087 (26/2991) 0 * Os_TE_63832 Os_TE_63829 Chr8 3660516 3660515 - COPIA2-LTR_OS 6433 0.0077 (23/2994) 0 * * Os_TE_63815 Chr8 3659291 3659292 + ORSgTETNOOT00908 242 0.6626 (1952/2946) 0 * * Os_TE_63809 Chr8 3658256 3658257 + RETRO2_LTR 12874 0.1476 (229/1552) 0 * Os_TE_63808 Os_TE_63808 Chr8 3658252 3658251 - RETRO2_LTR 12874 0.5757 (1712/2974) 0 * Os_TE_63809 Os_TE_63804 Chr8 3656548 3656547 + ORSgTEMT00100736 333 0.0027 (8/2975) 0 * * Os_TE_63801 Chr8 3655901 3655902 - STOWAWAY51_OS 246 0.0003 (1/2965) 0 * * Os_TE_63758 Chr8 3649812 3649813 - ORSgTEMT00101588 319 0.0010 (3/2871) 0 * * Os_TE_63751 Chr8 3648679 3648678 + ORSgTEMT01601122 212 0.0013 (4/2972) 0 * Os_TE_63750 Os_TE_63750 Chr8 3648676 3648677 + ORSgTEMT01601122 212 0.0014 (4/2962) 0 * Os_TE_63751 Os_TE_63710 Chr8 3641365 3641619 - WUJI 257 0.0580 (126/2173) 1 Intact * Os_TE_63703 Chr8 3639791 3639790 + STOWAWAY51_OS 246 0.0003 (1/2937) 0 * Os_TE_63702 Os_TE_63702 Chr8 3639785 3639786 + ORSgTEMT01601591 242 0.0003 (1/2965) 0 * Os_TE_63703 Os_TE_63663 Chr8 3623871 3623872 - SC-3_LTR 5748 0.0003 (1/2996) 0 * Os_TE_63662 Os_TE_63662 Chr8 3623867 3623866 + ORSiTERTOOT00296 5553 0.0003 (1/2996) 0 * Os_TE_63663 Os_TE_63638 Chr8 3606328 3606327 + STOWAWAY51_OS 246 0.0003 (1/2957) 0 * Os_TE_63637 Os_TE_63637 Chr8 3606322 3606323 - STOWAWAY51_OS 246 0.0003 (1/2957) 0 * Os_TE_63638 Os_TE_63613 Chr8 3594159 3594160 - NDNA1TNA_OS 334 0.0553 (164/2966) 0 * Os_TE_63612 Os_TE_63612 Chr8 3594157 3594156 + NDNA1TNA_OS 334 0.0542 (161/2973) 0 * Os_TE_63613 Os_TE_63607 Chr8 3593609 3593608 + ENSPM4_OS 11610 0.0003 (1/2976) 0 * * Os_TE_63601 Chr8 3591798 3591799 + ORSgTEMT00501960 150 0.0007 (2/2972) 0 * * Os_TE_63566 Chr8 3578750 3578751 + RETROSAT2LTR 12796 0.0010 (3/2985) 0 * * Os_TE_63549 Chr8 3573897 3573898 + AMYLTP 383 0.0017 (3/1779) 0 * * Os_TE_63546 Chr8 3572498 3572499 - COPI2_LTR 4733 0.0003 (1/2990) 0 * Os_TE_63545 Os_TE_63545 Chr8 3572494 3572493 + COPI2_LTR 4733 0.0003 (1/2992) 0 * Os_TE_63546 Os_TE_63512 Chr8 3564035 3564036 + ORSgTETNOOT00908 242 0.0007 (2/2994) 0 * * Os_TE_63510 Chr8 3562518 3562519 - ORSgTETNOOT00534 256 0.2728 (802/2940) 0 * Os_TE_63509 Os_TE_63509 Chr8 3562516 3562515 - INDITTO 263 0.2693 (789/2930) 0 * Os_TE_63510 Os_TE_63494 Chr8 3558093 3558094 - RETROSAT5_LTR 13878 0.0003 (1/2959) 0 * * Os_TE_63492 Chr8 3557409 3557408 - RETROSAT2LTRA 3112 0.0557 (156/2800) 0 * * Os_TE_63486 Chr8 3552533 3552534 - ENSPM4_OS 11610 0.0003 (1/2930) 0 * * Os_TE_63482 Chr8 3550798 3550797 + MPING 430 0.0013 (4/2972) 0 * * Os_TE_63481 Chr8 3549872 3549873 + MPING 430 0.0003 (1/2978) 0 * Os_TE_63480 Os_TE_63480 Chr8 3549870 3549869 - MPING 430 0.0003 (1/2977) 0 * Os_TE_63481 Os_TE_63479 Chr8 3548498 3548497 + INDITTO 263 0.0792 (235/2967) 0 * Os_TE_63478 Os_TE_63478 Chr8 3548494 3548495 - INDITTO 263 0.0774 (228/2947) 0 * Os_TE_63479 Os_TE_63471 Chr8 3543780 3543781 - MPING 430 0.0007 (2/2970) 0 * Os_TE_63470 Os_TE_63470 Chr8 3543778 3543777 + MPING 430 0.0007 (2/2899) 0 * Os_TE_63471 Os_TE_63462 Chr8 3542261 3542262 + STOWAWAY51_OS 246 0.0003 (1/2982) 0 * * Os_TE_63429 Chr8 3532230 3531924 + NDNA1TNA_OS 334 0.3430 (1009/2942) 1 Intact Os_TE_63428 Os_TE_63428 Chr8 3531922 3532231 + ORSgTEMT00100531 325 0.3445 (1011/2935) 1 Intact Os_TE_63429 Os_TE_63421 Chr8 3528217 3528218 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_63420 Os_TE_63420 Chr8 3528213 3528212 - COPIA2-LTR_OS 6433 0.0003 (1/2928) 0 * Os_TE_63421 Os_TE_63419 Chr8 3527993 3527994 + NDNA1TNA_OS 334 0.0270 (81/2996) 0 * * Os_TE_63417 Chr8 3527584 3527585 - COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_63416 Os_TE_63416 Chr8 3527580 3527579 + COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_63417 Os_TE_63415 Chr8 3527181 3527180 - OSLINE1-2 7128 0.0010 (3/2999) 0 * * Os_TE_63413 Chr8 3526054 3526055 + RETRO2_LTR 12874 0.0003 (1/2917) 0 * Os_TE_63412 Os_TE_63412 Chr8 3526050 3526049 - SZLTR 1249 0.0003 (1/2904) 0 * Os_TE_63413 Os_TE_63392 Chr8 3519343 3519344 + COPI2_LTR 4733 0.0003 (1/2989) 0 * Os_TE_63391 Os_TE_63391 Chr8 3519339 3519338 - COPI2_LTR 4733 0.0003 (1/2992) 0 * Os_TE_63392 Os_TE_63389 Chr8 3518849 3518850 - ORSiTETNOOT00200 3563 0.0258 (77/2979) 0 * Os_TE_63388 Os_TE_63388 Chr8 3518842 3518841 + TWIFBIG 3567 0.0249 (74/2971) 0 * Os_TE_63389 Os_TE_63348 Chr8 3503472 3503471 + ORSgTEMT01601591 242 0.0118 (35/2966) 0 * Os_TE_63347 Os_TE_63347 Chr8 3503469 3503470 - STOWAWAY51_OS 246 0.0104 (30/2898) 0 * Os_TE_63348 Os_TE_63326 Chr8 3497860 3497861 + INDITTO 263 0.4578 (1363/2977) 0 * Os_TE_63325 Os_TE_63325 Chr8 3497858 3497857 - INDITTO 263 0.4570 (1360/2976) 0 * Os_TE_63326 Os_TE_63301 Chr8 3491292 3491291 + STOWAWAY51_OS 246 0.0521 (147/2820) 0 * * Os_TE_63299 Chr8 3491268 3491269 + ENSPM6_OS 9815 0.0003 (1/2958) 0 * * Os_TE_63297 Chr8 3491076 3491075 - ENSPM6_OS 9815 0.0003 (1/2933) 0 * * Os_TE_63294 Chr8 3488704 3488705 + CACTA-B 1103 0.0003 (1/2950) 0 * * Os_TE_63285 Chr8 3488292 3488291 - CLOUD-6 508 0.0003 (1/2895) 0 * * Os_TE_63284 Chr8 3488083 3474111 + RETROSAT4_LTR 13504 0.1703 (474/2784) 1 Intact Os_TE_63275 Os_TE_63275 Chr8 3474111 3488083 - RETROSAT4_LTR 13504 0.1998 (577/2888) 1 Intact Os_TE_63284 Os_TE_63250 Chr8 3458578 3458423 - STOWAWAY1_OS 149 0.6816 (1974/2896) 1 Intact * Os_TE_63217 Chr8 3451116 3451117 - ORSgTETN00200001 10994 0.0003 (1/2974) 0 * Os_TE_63216 Os_TE_63216 Chr8 3451114 3451113 + SPMLIKE 10989 0.0003 (1/2963) 0 * Os_TE_63217 Os_TE_63209 Chr8 3446530 3446529 - SC-3_LTR 5748 0.0003 (1/2987) 0 * * Os_TE_63203 Chr8 3443275 3443038 + ORSgTEMT01601809 239 0.4876 (1410/2892) 1 Intact * Os_TE_63199 Chr8 3442971 3442736 - ORSgTEMT01602467 227 0.4661 (1312/2815) 1 Intact * Os_TE_63195 Chr8 3441293 3441292 - ORSgTEMT01600639 228 0.1679 (495/2948) 0 * * Os_TE_63182 Chr8 3432076 3432293 - COWARD-3 221 0.4814 (1021/2121) 1 Intact * Os_TE_63171 Chr8 3428134 3428135 - STOWAWAY21_OS 243 0.0032 (8/2509) 0 * * Os_TE_63168 Chr8 3427687 3427527 + ORSgTEMT00500373 144 0.5770 (1428/2475) 1 Intact * Os_TE_63154 Chr8 3424893 3424894 + ORSiCMCM00100019 2717 0.2505 (358/1429) 0 * Os_TE_63153 Os_TE_63153 Chr8 3424891 3424890 - TRUNCATOR2_LTR 2904 0.2696 (395/1465) 0 * Os_TE_63154 Os_TE_63151 Chr8 3424557 3424556 + TELIA 141 0.0003 (1/2986) 0 * * Os_TE_63146 Chr8 3419952 3419951 + RIREX_LTR 8828 0.0003 (1/2979) 0 * * Os_TE_63122 Chr8 3408481 3408482 - COPI2_LTR 4733 0.0003 (1/2962) 0 * Os_TE_63121 Os_TE_63121 Chr8 3408477 3408476 + COPI2_LTR 4733 0.0007 (2/2957) 0 * Os_TE_63122 Os_TE_63120 Chr8 3407906 3407907 + ORSgTETNOOT00908 242 0.0003 (1/2949) 0 * * Os_TE_63114 Chr8 3405508 3405509 + NDNA1TNA_OS 334 0.0003 (1/2992) 0 * Os_TE_63113 Os_TE_63113 Chr8 3405506 3405505 - NDNA1TNA_OS 334 0.0003 (1/2994) 0 * Os_TE_63114 Os_TE_63060 Chr8 3387980 3387981 - OSTE24 683 0.0003 (1/2980) 0 * * Os_TE_63048 Chr8 3383527 3383528 - SC-3_LTR 5748 0.0047 (14/2995) 0 * Os_TE_63047 Os_TE_63047 Chr8 3383523 3383522 + ORSiTERTOOT00296 5553 0.0047 (14/2994) 0 * Os_TE_63048 Os_TE_63041 Chr8 3376054 3376053 + ORSgTEMT01601591 242 0.0003 (1/2867) 0 * * Os_TE_63040 Chr8 3375927 3375928 + ORSiTERTOOT00311 8241 0.0142 (41/2885) 0 * * Os_TE_63038 Chr8 3375575 3375574 + STOWAWAY44_OS 240 0.0129 (38/2947) 0 * Os_TE_63037 Os_TE_63037 Chr8 3375572 3375573 - STOWAWAY44_OS 240 0.0132 (39/2947) 0 * Os_TE_63038 Os_TE_63031 Chr8 3374869 3374868 + STOWAWAY51_OS 246 0.0450 (120/2664) 0 * Os_TE_63030 Os_TE_63030 Chr8 3374863 3374864 - STOWAWAY51_OS 246 0.0402 (120/2985) 0 * Os_TE_63031 Os_TE_63013 Chr8 3359841 3359842 + COPIA2-LTR_OS 6433 0.0010 (3/2987) 0 * Os_TE_63012 Os_TE_63012 Chr8 3359837 3359836 - COPIA2-LTR_OS 6433 0.0010 (3/2988) 0 * Os_TE_63013 Os_TE_62977 Chr8 3351643 3351644 + RIREX_LTR 8828 0.0003 (1/2983) 0 * Os_TE_62976 Os_TE_62976 Chr8 3351639 3351638 - RIREX_LTR 8828 0.0003 (1/2992) 0 * Os_TE_62977 Os_TE_62974 Chr8 3350945 3350946 - ORSgTEMT00600524 364 0.2632 (769/2922) 0 * Os_TE_62973 Os_TE_62973 Chr8 3350943 3350942 + ORSgTEMT00600272 361 0.2666 (784/2941) 0 * Os_TE_62974 Os_TE_62969 Chr8 3348734 3348733 + ORSgTEMT00100272 356 0.1076 (316/2936) 0 * Os_TE_62968 Os_TE_62968 Chr8 3348732 3348733 + NDNA1TNA_OS 334 0.1144 (338/2954) 0 * Os_TE_62969 Os_TE_62958 Chr8 3347632 3347633 - YIREN 905 0.0020 (6/2944) 0 * Os_TE_62957 Os_TE_62957 Chr8 3347624 3347623 + YIREN 905 0.0017 (5/2946) 0 * Os_TE_62958 Os_TE_62951 Chr8 3346648 3346649 + INDITTO 263 0.0010 (3/2975) 0 * Os_TE_62950 Os_TE_62950 Chr8 3346646 3346645 + ORSgTETNOOT02406 265 0.0010 (3/2981) 0 * Os_TE_62951 Os_TE_62945 Chr8 3344839 3344840 - DS-RICE2N 613 0.0003 (1/2965) 0 * * Os_TE_62930 Chr8 3341335 3341336 + OSTE15 1168 0.0511 (151/2955) 0 * * Os_TE_62912 Chr8 3330956 3330955 + SEVERIN-2 1952 0.0003 (1/2990) 0 * * Os_TE_62899 Chr8 3325090 3325089 - OSLINE1-2 7128 0.0003 (1/2981) 0 * * Os_TE_62885 Chr8 3307015 3305360 + COPIO_LTR 11693 0.6478 (1909/2947) 1 Solo_LTR * Os_TE_62855 Chr8 3297195 3297194 + ORSgTEMT00500610 153 0.0004 (1/2841) 0 * * Os_TE_62822 Chr8 3284240 3284241 + SC-8_LTR 4951 0.0407 (122/2997) 0 * * Os_TE_62819 Chr8 3280971 3280972 + ORSgTETNOOT00908 242 0.0003 (1/2959) 0 * * Os_TE_62816 Chr8 3280610 3280611 + NDNA1TNA_OS 334 0.0098 (29/2971) 0 * * Os_TE_62810 Chr8 3279395 3279396 + AMYLTP 383 0.2992 (873/2918) 0 * Os_TE_62809 Os_TE_62809 Chr8 3279387 3279386 - AMYLTP 383 0.3064 (900/2937) 0 * Os_TE_62810 Os_TE_62797 Chr8 3277086 3277087 - ORSgTERT00201216 11284 0.4176 (905/2167) 0 * * Os_TE_62796 Chr8 3276932 3276933 + INDITTO 263 0.0645 (191/2959) 0 * Os_TE_62795 Os_TE_62795 Chr8 3276930 3276929 - INDITTO 263 0.0652 (193/2961) 0 * Os_TE_62796 Os_TE_62769 Chr8 3270044 3270045 + CRM-LTR_OS 7749 0.0003 (1/2926) 0 * * Os_TE_62754 Chr8 3267799 3267798 - STOWAWAY44_OS 240 0.0003 (1/2896) 0 * * Os_TE_62752 Chr8 3267767 3267768 - INDITTO 263 0.0296 (85/2870) 0 * Os_TE_62751 Os_TE_62751 Chr8 3267765 3267764 - ORSgTETNOOT02417 265 0.0313 (90/2871) 0 * Os_TE_62752 Os_TE_62748 Chr8 3265373 3265374 - COPI2_LTR 4733 0.0003 (1/2971) 0 * * Os_TE_62741 Chr8 3264372 3264603 - ORSgTEMT01600101 235 0.8122 (1912/2354) 1 Intact * Os_TE_62737 Chr8 3263461 3263616 + OsSN3 183 0.6034 (1462/2423) -1 Intact * Os_TE_62736 Chr8 3263321 3263322 + RIREX_LTR 8828 0.0004 (1/2302) -1 * Os_TE_62735 Os_TE_62735 Chr8 3263317 3263316 - RIREX_LTR 8828 0.0004 (1/2357) -1 * Os_TE_62736 Os_TE_62721 Chr8 3253278 3260054 + RIREX_LTR 8828 0.4733 (940/1986) 1 Intact * Os_TE_62711 Chr8 3248766 3248767 + RIRE3_LTR 12054 0.0408 (118/2893) 0 * Os_TE_62710 Os_TE_62710 Chr8 3248762 3248761 - RIRE3_LTR 12054 0.0415 (121/2918) 0 * Os_TE_62711 Os_TE_62697 Chr8 3244974 3244973 + RIREX_LTR 8828 0.0010 (3/2995) 0 * * Os_TE_62696 Chr8 3243866 3243867 + SZ-10_LTR 7986 0.0038 (11/2914) 0 * * Os_TE_62694 Chr8 3243785 3243786 + RIRE2_LTR 11306 0.0141 (41/2900) 0 * Os_TE_62693 Os_TE_62693 Chr8 3243781 3243780 - RIRE2_LTR 11306 0.0134 (39/2909) 0 * Os_TE_62694 Os_TE_62577 Chr8 3193055 3193169 + SZ-58LTR 114 0.5800 (1715/2957) 1 Intact * Os_TE_62573 Chr8 3191667 3191666 - STOWAWAY47_OS 148 0.0006 (1/1708) 0 * * Os_TE_62569 Chr8 3187908 3187907 + ORSgTEMT01601591 242 0.0090 (27/2996) 0 * Os_TE_62568 Os_TE_62568 Chr8 3187902 3187903 + STOWAWAY51_OS 246 0.0158 (28/1773) 0 * Os_TE_62569 Os_TE_62566 Chr8 3187531 3187530 - NDNA1TNA_OS 334 0.1385 (301/2173) 0 * * Os_TE_62565 Chr8 3187480 3187479 + ORSgTEMT01601591 242 0.0034 (10/2950) 0 * Os_TE_62564 Os_TE_62564 Chr8 3187474 3187475 + STOWAWAY51_OS 246 0.0033 (10/2988) 0 * Os_TE_62565 Os_TE_62543 Chr8 3170818 3170819 + RETRO2A_LTR 12895 0.0031 (9/2891) 0 * * Os_TE_62525 Chr8 3157235 3157236 - COPIA2-LTR_OS 6433 0.0003 (1/2984) 0 * Os_TE_62524 Os_TE_62524 Chr8 3157231 3157230 + COPIA2-LTR_OS 6433 0.0003 (1/2986) 0 * Os_TE_62525 Os_TE_62523 Chr8 3157163 3157164 + NDNA1TNA_OS 334 0.0090 (27/2987) 0 * Os_TE_62522 Os_TE_62522 Chr8 3157161 3157160 - NDNA1TNA_OS 334 0.0090 (27/2987) 0 * Os_TE_62523 Os_TE_62504 Chr8 3149179 3149180 - SC-8_LTR 4951 0.0003 (1/2996) 0 * * Os_TE_62496 Chr8 3144817 3144818 + RETROSAT2LTR 12796 0.0143 (41/2870) 0 * * Os_TE_62491 Chr8 3143310 3143309 + STOWAWAY11_OS 292 0.0005 (1/2028) 0 * * Os_TE_62489 Chr8 3140541 3140542 + AMYLTP 383 0.0836 (250/2989) 0 * * Os_TE_62482 Chr8 3136186 3136187 + MPING 430 0.0004 (1/2772) 0 * Os_TE_62481 Os_TE_62481 Chr8 3136184 3136183 - MPING 430 0.0004 (1/2841) 0 * Os_TE_62482 Os_TE_62462 Chr8 3130205 3130206 - SC-3_LTR 5748 0.0832 (249/2993) 0 * * Os_TE_62452 Chr8 3126882 3126881 + ORSiTEMT03300001 145 0.0007 (2/2954) 0 * Os_TE_62451 Os_TE_62451 Chr8 3126881 3126882 - UNIQUE 158 0.0003 (1/2945) 0 * Os_TE_62452 Os_TE_62450 Chr8 3126704 3126705 + TELIA 141 0.0003 (1/2890) 0 * * Os_TE_62431 Chr8 3118592 3118593 - TELIA 141 0.0953 (285/2990) 0 * Os_TE_62430 Os_TE_62430 Chr8 3118584 3118583 + TELIA 141 0.0944 (282/2987) 0 * Os_TE_62431 Os_TE_62416 Chr8 3107167 3107168 + INDITTO 263 0.0034 (10/2949) 0 * Os_TE_62415 Os_TE_62415 Chr8 3107165 3107164 - INDITTO 263 0.0034 (10/2947) 0 * Os_TE_62416 Os_TE_62410 Chr8 3102939 3102940 - ORMOSIA 482 0.0090 (27/2985) 0 * * Os_TE_62404 Chr8 3100685 3100686 - RETROSAT2LTR 12796 0.2626 (769/2928) 0 * Os_TE_62403 Os_TE_62403 Chr8 3100683 3100682 + RETROSAT2LTR 12796 0.2334 (666/2853) 0 * Os_TE_62404 Os_TE_62402 Chr8 3100335 3100334 - TRUNCATOR 2918 0.3666 (1065/2905) 0 * Os_TE_62401 Os_TE_62401 Chr8 3100334 3100335 + TRUNCATOR 2918 0.3828 (1128/2947) 0 * Os_TE_62402 Os_TE_62399 Chr8 3100040 3100039 - ORSgTETN00200002 7303 0.0004 (1/2678) 0 * * Os_TE_62395 Chr8 3099709 3099710 + TEMPINDAS 4259 0.3274 (953/2911) 0 * Os_TE_62394 Os_TE_62394 Chr8 3099702 3099701 - TEMPINDAS 4259 0.2956 (829/2804) 0 * Os_TE_62395 Os_TE_62383 Chr8 3096365 3096366 - SINE9_OS 293 0.0093 (27/2906) 0 * * Os_TE_62369 Chr8 3095037 3095038 - ORSgTEMT01701858 154 0.0091 (27/2965) 0 * * Os_TE_62357 Chr8 3092212 3092213 + INDITTO 263 0.0010 (3/2946) 0 * Os_TE_62356 Os_TE_62356 Chr8 3092210 3092209 - INDITTO 263 0.0010 (3/2940) 0 * Os_TE_62357 Os_TE_62319 Chr8 3073990 3073991 + RIREX_LTR 8828 0.0003 (1/2963) 0 * * Os_TE_62316 Chr8 3072640 3072641 + RIREX_LTR 8828 0.0004 (1/2855) 0 * * Os_TE_62314 Chr8 3072364 3072365 - RIRE2_LTR 11306 0.0217 (61/2814) 0 * Os_TE_62313 Os_TE_62313 Chr8 3072360 3072359 - ORSgTERT00201216 11284 0.0211 (59/2795) 0 * Os_TE_62314 Os_TE_62303 Chr8 3071124 3071125 - NDNA1TNA_OS 334 0.0003 (1/2976) 0 * Os_TE_62302 Os_TE_62302 Chr8 3071122 3071121 + NDNA1TNA_OS 334 0.0003 (1/2954) 0 * Os_TE_62303 Os_TE_62297 Chr8 3065029 3065030 - SC-3_LTR 5748 0.0007 (2/2986) 0 * Os_TE_62296 Os_TE_62296 Chr8 3065025 3065024 + ORSiTERTOOT00296 5553 0.0007 (2/2985) 0 * Os_TE_62297 Os_TE_62272 Chr8 3055179 3055180 - SC-3_LTR 5748 0.0007 (2/2999) 0 * Os_TE_62271 Os_TE_62271 Chr8 3055175 3055174 + ORSiTERTOOT00296 5553 0.0007 (2/2999) 0 * Os_TE_62272 Os_TE_62269 Chr8 3051106 3051107 + AMYLTP 383 0.0509 (152/2988) 0 * Os_TE_62268 Os_TE_62268 Chr8 3051098 3051097 - AMYLTP 383 0.0542 (162/2990) 0 * Os_TE_62269 Os_TE_62261 Chr8 3047211 3047212 - ORSgTETNOOT01534 208 0.0004 (1/2453) -1 * * Os_TE_62219 Chr8 3025251 3025252 + ORSiTERTOOT00296 5553 0.0007 (2/2977) 0 * Os_TE_62218 Os_TE_62218 Chr8 3025247 3025246 - SC-3_LTR 5748 0.0003 (1/2978) 0 * Os_TE_62219 Os_TE_62215 Chr8 3021510 3021511 - SC-8_LTR 4951 0.0003 (1/2991) 0 * Os_TE_62214 Os_TE_62214 Chr8 3021506 3021505 + SC-8_LTR 4951 0.0003 (1/2990) 0 * Os_TE_62215 Os_TE_62201 Chr8 3013029 3013030 + ORSgTETNOOT00908 242 0.0003 (1/2962) 0 * Os_TE_62200 Os_TE_62200 Chr8 3013027 3013026 - ORSgTETNOOT00908 242 0.0003 (1/2962) 0 * Os_TE_62201 Os_TE_62194 Chr8 3008908 3009062 + ORSgTEMT01702111 154 0.7968 (2388/2997) 0.91 Intact * Os_TE_62172 Chr8 3004021 3004020 - STOWAWAY51_OS 246 0.2230 (646/2897) 0 * Os_TE_62171 Os_TE_62171 Chr8 3004013 3004014 + STOWAWAY51_OS 246 0.2161 (622/2878) 0 * Os_TE_62172 Os_TE_62168 Chr8 2997700 2997701 - SC-8_LTR 4951 0.0003 (1/2988) 0 * * Os_TE_62164 Chr8 2996184 2996185 + F804 170 0.2206 (652/2956) 0 * * Os_TE_62160 Chr8 2995082 2995348 - ORSgTETNOOT01598 259 0.8084 (2354/2912) 1 Intact * Os_TE_62158 Chr8 2994568 2994569 - SZ-67LTR 1540 0.0117 (28/2384) 0 * * Os_TE_62156 Chr8 2994536 2994537 - SZ-22_LTR 4403 0.0003 (1/2984) 0 * Os_TE_62155 Os_TE_62155 Chr8 2994532 2994531 + ORSiTERTOOT00226 792 0.0003 (1/2983) 0 * Os_TE_62156 Os_TE_62140 Chr8 2988215 2988214 + STOWAWAY9_OS 235 0.0021 (6/2812) 0 * * Os_TE_62115 Chr8 2982586 2982587 + MPING 430 0.0003 (1/2987) 0 * Os_TE_62114 Os_TE_62114 Chr8 2982584 2982583 - MPING 430 0.0003 (1/2986) 0 * Os_TE_62115 Os_TE_62110 Chr8 2980843 2980844 - ORSgTEMT01701882 154 0.0010 (3/2992) 0 * * Os_TE_62104 Chr8 2979717 2979718 + ORSiTERTOOT00296 5553 0.0003 (1/2988) 0 * Os_TE_62103 Os_TE_62103 Chr8 2979713 2979712 - SC-3_LTR 5748 0.0003 (1/2988) 0 * Os_TE_62104 Os_TE_62102 Chr8 2979606 2979605 - ORSgTEMT00900467 235 0.0020 (6/2985) 0 * Os_TE_62101 Os_TE_62101 Chr8 2979605 2979606 + ORSgTEMT00901844 250 0.0027 (8/2984) 0 * Os_TE_62102 Os_TE_62097 Chr8 2977048 2977049 + F770 284 0.0011 (3/2836) 0 * Os_TE_62096 Os_TE_62096 Chr8 2977046 2977045 - F770 284 0.0010 (3/2861) 0 * Os_TE_62097 Os_TE_62090 Chr8 2971860 2971861 + ORSgTEMT00501786 149 0.0024 (7/2900) 0 * * Os_TE_62086 Chr8 2970480 2970481 - SC-3_LTR 5748 0.0050 (15/2990) 0 * Os_TE_62085 Os_TE_62085 Chr8 2970476 2970475 + ORSiTERTOOT00296 5553 0.0050 (15/2989) 0 * Os_TE_62086 Os_TE_62079 Chr8 2964283 2964284 + MPING 430 0.0004 (1/2833) 0 * * Os_TE_62062 Chr8 2955976 2955977 - COPI2_LTR 4733 0.0003 (1/2987) 0 * Os_TE_62061 Os_TE_62061 Chr8 2955972 2955971 + COPI2_LTR 4733 0.0003 (1/2987) 0 * Os_TE_62062 Os_TE_62060 Chr8 2955813 2955814 + RETROSAT4_LTR 13504 0.0003 (1/2996) 0 * Os_TE_62059 Os_TE_62059 Chr8 2955809 2955808 - RETROSAT4_LTR 13504 0.0003 (1/2995) 0 * Os_TE_62060 Os_TE_62043 Chr8 2943891 2943892 + AMYLTP 383 0.0511 (153/2997) 0 * Os_TE_62042 Os_TE_62042 Chr8 2943883 2943882 - AMYLTP 383 0.0484 (145/2993) 0 * Os_TE_62043 Os_TE_62039 Chr8 2943064 2943065 + COPIA2-LTR_OS 6433 0.0221 (66/2988) 0 * Os_TE_62038 Os_TE_62038 Chr8 2943060 2943059 - COPIA2-LTR_OS 6433 0.0231 (69/2993) 0 * Os_TE_62039 Os_TE_62033 Chr8 2941162 2941163 + SEVERIN-2 1952 0.0078 (23/2951) 0 * * Os_TE_62032 Chr8 2940919 2940794 + STOWAWAY46_OS 154 0.6140 (1802/2935) 1 Intact Os_TE_62030 Os_TE_62030 Chr8 2940794 2940919 + TREP220 109 0.6165 (1828/2965) 1 Intact Os_TE_62032 Os_TE_62029 Chr8 2938508 2938507 - ORSgTEMT01500001 215 0.0080 (24/2984) 0 * Os_TE_62028 Os_TE_62028 Chr8 2938505 2938506 + STOWAWAY41_OS 264 0.0084 (25/2983) 0 * Os_TE_62029 Os_TE_62021 Chr8 2934086 2933823 + STOWAWAY45_OS 266 0.6203 (1825/2942) 1 Intact Os_TE_62019 Os_TE_62019 Chr8 2933823 2934086 - STOWAWAY45_OS 266 0.6436 (1826/2837) 1 Intact Os_TE_62021 Os_TE_62008 Chr8 2928960 2928564 + ORSgTEMT00100736 333 0.6232 (1859/2983) 1 Intact Os_TE_62004 Os_TE_62004 Chr8 2928557 2928950 - ORSgTEMT00100133 346 0.6223 (1855/2981) 1 Intact Os_TE_62008 Os_TE_62000 Chr8 2927748 2927578 + F804 170 0.6148 (1831/2978) 1 Intact * Os_TE_61996 Chr8 2923393 2923392 - TELIA 141 0.0884 (238/2693) 0 * * Os_TE_61995 Chr8 2923275 2923276 + F118 179 0.3654 (1027/2811) 0 * * Os_TE_61990 Chr8 2922661 2922662 + ORSgTEMT01602413 239 0.2826 (719/2544) 0 * * Os_TE_61978 Chr8 2920514 2920513 + ORSgTEMT01700715 134 0.0073 (20/2753) 0 * * Os_TE_61974 Chr8 2920166 2920167 + SNAP-OL3 189 0.3915 (1163/2971) 0 * * Os_TE_61973 Chr8 2920086 2920087 - MuDR4_OS 7610 0.0003 (1/2992) 0 * * Os_TE_61972 Chr8 2918329 2918328 - ORSgTEMT01600639 228 0.0082 (24/2923) 0 * Os_TE_61971 Os_TE_61971 Chr8 2918327 2918328 - ORSgTEMT01601208 238 0.0076 (22/2902) 0 * Os_TE_61972 Os_TE_61965 Chr8 2916958 2916959 - EnSpm-15_OS 8871 0.0084 (25/2978) 0 * Os_TE_61964 Os_TE_61964 Chr8 2916956 2916955 + EnSpm-15_OS 8871 0.0084 (25/2973) 0 * Os_TE_61965 Os_TE_61961 Chr8 2916847 2916846 - ORSgTETN00200001 10994 0.3315 (987/2977) 0 * * Os_TE_61960 Chr8 2916624 2916625 + ORSgTEMT00101532 332 0.0005 (1/2034) 0 * * Os_TE_61959 Chr8 2916566 2916141 + ORSgTEMT00100272 356 0.7288 (2029/2784) 1 Intact Os_TE_61954 Os_TE_61954 Chr8 2916146 2916564 + ORSgTEMT00101121 331 0.6797 (1999/2941) 1 Intact Os_TE_61959 Os_TE_61948 Chr8 2914763 2914524 - STOWAWAY51_OS 246 0.6562 (1899/2894) 1 Intact Os_TE_61946 Os_TE_61946 Chr8 2914521 2914763 + STOWAWAY51_OS 246 0.7964 (1983/2490) 1 Intact Os_TE_61948 Os_TE_61942 Chr8 2913763 2913762 + ORSgTEMT00501455 153 0.3459 (1035/2992) 0 * Os_TE_61941 Os_TE_61941 Chr8 2913744 2913745 + ORSgTEMT00501441 144 0.3227 (940/2913) 0 * Os_TE_61942 Os_TE_61939 Chr8 2913081 2913082 + MERMITEB 1610 0.3486 (1027/2946) 0 * Os_TE_61938 Os_TE_61938 Chr8 2913079 2913078 + MERMITEB 1610 0.3485 (1037/2976) 0 * Os_TE_61939 Os_TE_61933 Chr8 2909184 2909185 + STOWAWAY1_OS 149 0.2001 (570/2849) 0 * * Os_TE_61927 Chr8 2908163 2908432 + ORSgTEMT03000025 382 0.8087 (2299/2843) 1 Intact * Os_TE_61924 Chr8 2906568 2907874 - CLOUD-6 508 0.8074 (2305/2855) 1 Intact * Os_TE_61906 Chr8 2893419 2893172 + STOWAWAY51_OS 246 0.8737 (2407/2755) 1 Intact * Os_TE_61896 Chr8 2891985 2891986 + MDM2 312 0.1607 (462/2875) 0 * Os_TE_61895 Os_TE_61895 Chr8 2891977 2891976 + MDM2 312 0.1701 (494/2904) 0 * Os_TE_61896 Os_TE_61890 Chr8 2887727 2887726 - ORSgTEMT01601208 238 0.0013 (4/2986) 0 * * Os_TE_61887 Chr8 2887702 2887703 + ORSgTEMT01400031 216 0.1829 (544/2975) 0 * * Os_TE_61886 Chr8 2887594 2887595 - STOWAWAY8_OS 259 0.0014 (4/2928) 0 * * Os_TE_61884 Chr8 2886172 2886173 - NDNA1TNA_OS 334 0.0011 (3/2806) 0 * Os_TE_61883 Os_TE_61883 Chr8 2886170 2886169 + NDNA1TNA_OS 334 0.0011 (3/2823) 0 * Os_TE_61884 Os_TE_61871 Chr8 2879384 2879628 - STOWAWAY9_OS 235 0.3745 (1117/2983) 1 Intact * Os_TE_61869 Chr8 2879039 2879038 - ORSgTEMT00901345 248 0.1938 (576/2972) 0 * * Os_TE_61847 Chr8 2877010 2877011 - RIRE2_LTR 11306 0.0009 (1/1138) 0 * Os_TE_61846 Os_TE_61846 Chr8 2877006 2877005 - ORSgTERT00201216 11284 0.0009 (1/1138) 0 * Os_TE_61847 Os_TE_61845 Chr8 2876419 2876420 + TRUNCATOR 2918 0.0009 (1/1142) 0 * * Os_TE_61794 Chr8 2834821 2834820 + STOWAWAY8_OS 259 0.0014 (2/1466) 0 * * Os_TE_61783 Chr8 2830136 2830137 + RETRO2_LTR 12874 0.0506 (124/2452) 0 * Os_TE_61782 Os_TE_61782 Chr8 2830132 2830131 - RETRO2_LTR 12874 0.0502 (123/2451) 0 * Os_TE_61783 Os_TE_61781 Chr8 2829921 2821433 - MDR2 6967 0.1043 (255/2446) 1 Intact Os_TE_61780 Os_TE_61780 Chr8 2821433 2829921 + MDR2 6967 0.1038 (254/2446) 1 Intact Os_TE_61781 Os_TE_61779 Chr8 2821213 2821214 + RIREX_LTR 8828 0.0118 (29/2457) 0 * Os_TE_61778 Os_TE_61778 Chr8 2821209 2821208 - RIREX_LTR 8828 0.0118 (29/2462) 0 * Os_TE_61779 Os_TE_61776 Chr8 2820581 2820329 + ORSiOTOT00000037 220 0.7848 (1926/2454) 1 Intact * Os_TE_61767 Chr8 2816338 2816339 - TEMPINDAS 4259 0.0494 (121/2449) 0 * * Os_TE_61764 Chr8 2814998 2814999 - RETROSAT2LTR 12796 0.0803 (238/2965) 0 * * Os_TE_61763 Chr8 2812772 2812773 - ORSgTEMT00900099 250 0.4659 (1392/2988) 0 * * Os_TE_61761 Chr8 2812715 2812454 + DITAILA 257 0.5636 (1680/2981) 1 Intact Os_TE_61757 Os_TE_61757 Chr8 2812452 2812713 - DITAILA 257 0.5606 (1671/2981) 0.91 Intact Os_TE_61761 Os_TE_61746 Chr8 2807030 2807031 + COPIA2-LTR_OS 6433 0.0004 (1/2644) 0 * Os_TE_61745 Os_TE_61745 Chr8 2807026 2807025 - COPIA2-LTR_OS 6433 0.0004 (1/2579) 0 * Os_TE_61746 Os_TE_61738 Chr8 2805358 2805357 + WUWU 113 0.3214 (963/2996) 0 * * Os_TE_61737 Chr8 2803502 2799902 - SZ-67LTR 1540 0.6954 (2041/2935) 1 Intact Os_TE_61733 Os_TE_61733 Chr8 2799902 2803502 + SZ-67LTR 1540 0.6983 (2065/2957) 1 Intact Os_TE_61737 Os_TE_61722 Chr8 2796648 2796649 + OSTE9 421 0.0004 (1/2605) 0 * * Os_TE_61686 Chr8 2782299 2782300 - COPIA2-LTR_OS 6433 0.0048 (14/2942) 0 * Os_TE_61685 Os_TE_61685 Chr8 2782295 2782294 + COPIA2-LTR_OS 6433 0.0048 (14/2941) 0 * Os_TE_61686 Os_TE_61657 Chr8 2777601 2777600 + ORSgTEMT00700017 386 0.0003 (1/2972) 0 * Os_TE_61656 Os_TE_61656 Chr8 2777594 2777595 - ORSgTEMT00700002 381 0.0003 (1/2952) 0 * Os_TE_61657 Os_TE_61649 Chr8 2774699 2774700 + ORSiTERTOOT00034 791 0.0017 (5/2992) 0 * * Os_TE_61640 Chr8 2770255 2770256 - STOWAWAY1_OS 149 0.0438 (129/2945) 0 * Os_TE_61639 Os_TE_61639 Chr8 2770254 2770253 + STOWAWAY1_OS 149 0.0389 (114/2930) 0 * Os_TE_61640 Os_TE_61637 Chr8 2769828 2769829 + RIREX_LTR 8828 0.0003 (1/2906) 0 * Os_TE_61636 Os_TE_61636 Chr8 2769824 2769823 - RIRE2_LTR 11306 0.0003 (1/2994) 0 * Os_TE_61637 Os_TE_61632 Chr8 2768398 2768399 + RETROSAT4_LTR 13504 0.0020 (6/2988) 0 * Os_TE_61631 Os_TE_61631 Chr8 2768394 2768393 - SZ-35LTR 3853 0.0023 (7/2983) 0 * Os_TE_61632 Os_TE_61628 Chr8 2768181 2768182 - ORSgTEMT04600032 273 0.0013 (4/2986) 0 * * Os_TE_61625 Chr8 2766209 2766208 + ORSgTEMT01601876 243 0.0431 (129/2990) 0 * * Os_TE_61621 Chr8 2763209 2763208 + COPIA2-LTR_OS 6433 0.0013 (4/2995) 0 * * Os_TE_61618 Chr8 2762040 2762041 + ORSiTERTOOT00296 5553 0.0003 (1/2996) 0 * Os_TE_61617 Os_TE_61617 Chr8 2762036 2762035 - SC-3_LTR 5748 0.0003 (1/2998) 0 * Os_TE_61618 Os_TE_61616 Chr8 2761029 2761030 + MPING 430 0.0003 (1/2999) 0 * Os_TE_61615 Os_TE_61615 Chr8 2761027 2761026 - MPING 430 0.0003 (1/2986) 0 * Os_TE_61616 Os_TE_61611 Chr8 2743322 2750227 - RIREX_LTR 8828 0.6662 (1986/2981) 1 Intact * Os_TE_61609 Chr8 2742541 2742540 + ORSgTEMT01601934 207 0.0013 (4/2974) 0 * Os_TE_61608 Os_TE_61608 Chr8 2742540 2742541 + ORSgTEMT01601934 207 0.0017 (5/2975) 0 * Os_TE_61609 Os_TE_61537 Chr8 2695063 2695062 - TRUNCATOR 2918 0.0003 (1/2962) 0 * Os_TE_61536 Os_TE_61536 Chr8 2695062 2695063 + TRUNCATOR 2918 0.0003 (1/2963) 0 * Os_TE_61537 Os_TE_61531 Chr8 2693184 2693183 + ORSgTEMT01700513 151 0.0017 (5/2938) 0 * Os_TE_61530 Os_TE_61530 Chr8 2693183 2693184 - STOWAWAY1_OS 149 0.0020 (6/2943) 0 * Os_TE_61531 Os_TE_61524 Chr8 2689844 2689845 + COPI2_LTR 4733 0.0003 (1/2984) 0 * Os_TE_61523 Os_TE_61523 Chr8 2689840 2689839 - COPI2_LTR 4733 0.0003 (1/2984) 0 * Os_TE_61524 Os_TE_61508 Chr8 2685607 2685608 + COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_61507 Os_TE_61507 Chr8 2685603 2685602 - COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_61508 Os_TE_61506 Chr8 2685572 2685573 + RIREX_LTR 8828 0.0003 (1/2995) 0 * Os_TE_61505 Os_TE_61505 Chr8 2685568 2685567 - RIREX_LTR 8828 0.0003 (1/2995) 0 * Os_TE_61506 Os_TE_61486 Chr8 2674570 2674571 + SC-1_LTR 6888 0.0782 (230/2942) 0 * * Os_TE_61485 Chr8 2673189 2673190 + SZ-48LTR 3632 0.1983 (545/2749) 0 * * Os_TE_61481 Chr8 2671552 2671553 - COPI2_LTR 4733 0.0003 (1/2966) 0 * Os_TE_61480 Os_TE_61480 Chr8 2671548 2671547 + COPI2_LTR 4733 0.0003 (1/2977) 0 * Os_TE_61481 Os_TE_61478 Chr8 2671329 2670365 + SZ-9LTR 965 0.6725 (1998/2971) 1 Intact * Os_TE_61474 Chr8 2664932 2665896 - SZ-9LTR 965 0.6769 (2030/2999) 1 Intact * Os_TE_61446 Chr8 2645585 2645586 + OSTE33 1012 0.0007 (2/2883) 0 * Os_TE_61445 Os_TE_61445 Chr8 2645576 2645575 + OSTE33 1012 0.0003 (1/2883) 0 * Os_TE_61446 Os_TE_61424 Chr8 2638816 2638817 + SC9A_LTR 5300 0.0514 (154/2996) 0 * * Os_TE_61420 Chr8 2635621 2635622 + RIREX_LTR 8828 0.0010 (2/2039) 0 * Os_TE_61419 Os_TE_61419 Chr8 2635617 2635616 - RIREX_LTR 8828 0.0010 (2/2041) 0 * Os_TE_61420 Os_TE_61402 Chr8 2630538 2630537 - TNR2A 152 0.0010 (2/2009) 0 * * Os_TE_61358 Chr8 2616954 2616955 + MPING 430 0.0069 (14/2034) 0 * Os_TE_61357 Os_TE_61357 Chr8 2616952 2616951 - MPING 430 0.0015 (3/2021) 0 * Os_TE_61358 Os_TE_61328 Chr8 2604454 2604455 + ORSgTETNOOT00908 242 0.0056 (14/2482) 0 * * Os_TE_61272 Chr8 2571553 2571554 + RIREX_LTR 8828 0.0005 (1/2040) 0 * * Os_TE_61247 Chr8 2554886 2554887 - RIREX_LTR 8828 0.0010 (2/2053) 0 * Os_TE_61246 Os_TE_61246 Chr8 2554882 2554881 + RIREX_LTR 8828 0.0005 (1/2047) 0 * Os_TE_61247 Os_TE_61245 Chr8 2553177 2553178 - MPING 430 0.0005 (1/2052) 0 * Os_TE_61244 Os_TE_61244 Chr8 2553175 2553174 - MPING 430 0.0005 (1/2056) 0 * Os_TE_61245 Os_TE_61234 Chr8 2551192 2551193 - TYPEM 227 0.0005 (1/2009) 0 * * Os_TE_61179 Chr8 2514124 2514125 - RETRO2_LTR 12874 0.0003 (1/2994) 0 * * Os_TE_61140 Chr8 2502990 2502991 + INDITTO 263 0.1614 (479/2968) 0 * Os_TE_61139 Os_TE_61139 Chr8 2502988 2502987 - INDITTO 263 0.1630 (484/2970) 0 * Os_TE_61140 Os_TE_61137 Chr8 2502948 2502947 - ORSgTETNOOT02000 263 0.0111 (33/2963) 0 * * Os_TE_61127 Chr8 2499585 2499586 - ORSgTEMT01601493 303 0.0017 (5/2999) 0 * Os_TE_61126 Os_TE_61126 Chr8 2499582 2499581 + ORSgTEMT01601934 207 0.0017 (5/2998) 0 * Os_TE_61127 Os_TE_61112 Chr8 2494068 2482988 + CACTA-B 1103 0.6805 (1987/2920) 1 Intact Os_TE_61101 Os_TE_61101 Chr8 2482988 2494001 - ORSgTETN00200001 10994 0.6613 (1853/2802) 1 Intact Os_TE_61112 Os_TE_61100 Chr8 2482777 2482778 - TYPEM 227 0.0003 (1/2916) 0 * Os_TE_61099 Os_TE_61099 Chr8 2482776 2482775 - ORSgTEMT02400179 221 0.0003 (1/2933) 0 * Os_TE_61100 Os_TE_61097 Chr8 2482624 2482623 + SPMLIKE 10989 0.0003 (1/2949) 0 * * Os_TE_61086 Chr8 2478330 2478331 - SZ-22_LTR 4403 0.0003 (1/2939) 0 * Os_TE_61085 Os_TE_61085 Chr8 2478326 2478325 + ORSiTERTOOT00226 792 0.0003 (1/2938) 0 * Os_TE_61086 Os_TE_61075 Chr8 2473786 2473787 - ORSgTEMT00300008 396 0.0004 (1/2700) 0 * * Os_TE_61059 Chr8 2466326 2466327 - AMYLTP 383 0.0048 (14/2899) 0 * Os_TE_61058 Os_TE_61058 Chr8 2466318 2466317 + AMYLTP 383 0.0048 (14/2903) 0 * Os_TE_61059 Os_TE_61057 Chr8 2465974 2465975 - RETROSAT4_LTR 13504 0.0052 (15/2911) 0 * Os_TE_61056 Os_TE_61056 Chr8 2465970 2465969 + RETROSAT4_LTR 13504 0.0045 (13/2906) 0 * Os_TE_61057 Os_TE_61050 Chr8 2463256 2463257 - ORSgTEMT01702216 170 0.0144 (43/2989) 0 * * Os_TE_61048 Chr8 2462930 2462929 - ENSPM3_OS 10837 0.0151 (45/2989) 0 * * Os_TE_61042 Chr8 2459847 2459569 + ORSgTEMT05000092 279 0.7127 (2114/2966) 1 Intact Os_TE_61039 Os_TE_61039 Chr8 2459569 2459847 - SUSU 279 0.7074 (2084/2946) 1 Intact Os_TE_61042 Os_TE_61031 Chr8 2458458 2458457 - CACTA-H 1152 0.1027 (305/2970) 0 * Os_TE_61030 Os_TE_61030 Chr8 2458457 2458458 + CACTA-B 1103 0.0928 (274/2951) 0 * Os_TE_61031 Os_TE_61004 Chr8 2441158 2441159 - SZ-9LTR 965 0.0050 (15/2992) 0 * Os_TE_61003 Os_TE_61003 Chr8 2441154 2441153 - SZ-9LTR 965 0.0050 (15/2995) 0 * Os_TE_61004 Os_TE_60992 Chr8 2433357 2433358 + MPING 430 0.0068 (20/2955) 0 * Os_TE_60991 Os_TE_60991 Chr8 2433355 2433354 - MPING 430 0.0068 (20/2954) 0 * Os_TE_60992 Os_TE_60990 Chr8 2432740 2432741 - COPIA2-LTR_OS 6433 0.0010 (3/2997) 0 * Os_TE_60989 Os_TE_60989 Chr8 2432736 2432735 + COPIA2-LTR_OS 6433 0.0010 (3/2998) 0 * Os_TE_60990 Os_TE_60974 Chr8 2426530 2426531 + ORSgTEMT00700017 386 0.0003 (1/2945) 0 * * Os_TE_60939 Chr8 2411420 2411421 + ORSgTEMT01602284 235 0.0003 (1/2968) 0 * * Os_TE_60936 Chr8 2411088 2411087 + TELIA 141 0.0670 (190/2834) 0 * * Os_TE_60874 Chr8 2394878 2394877 + TELIA 141 0.0003 (1/2870) 0 * * Os_TE_60862 Chr8 2389738 2389737 - CENTRE 280 0.0003 (1/2993) 0 * * Os_TE_60821 Chr8 2365765 2365766 - COPI2_LTR 4733 0.0003 (1/2970) 0 * Os_TE_60820 Os_TE_60820 Chr8 2365761 2365760 + COPI2_LTR 4733 0.0003 (1/2974) 0 * Os_TE_60821 Os_TE_60807 Chr8 2346619 2365333 - RETROSAT4_LTR 13504 0.3230 (963/2981) 1 Intact * Os_TE_60757 Chr8 2335675 2335676 - SC-3_LTR 5748 0.0010 (3/2990) 0 * * Os_TE_60738 Chr8 2332915 2332916 - ORSgTEMT00901723 248 0.0004 (1/2835) 0 * * Os_TE_60734 Chr8 2331113 2331114 - OSTE33 1012 0.6491 (1920/2958) 0 * Os_TE_60733 Os_TE_60733 Chr8 2331103 2331102 - OSTE33 1012 0.6489 (1924/2965) 0 * Os_TE_60734 Os_TE_60719 Chr8 2323977 2323978 - RETROSAT5_LTR 13878 0.2143 (600/2800) 0 * Os_TE_60718 Os_TE_60718 Chr8 2323973 2323972 + SZ-67LTR 1540 0.2014 (556/2761) 0 * Os_TE_60719 Os_TE_60704 Chr8 2321773 2321772 - EnSpm-13_OS 11171 0.0003 (1/2971) 0 * * Os_TE_60702 Chr8 2321582 2321583 + INDITTO 263 0.1173 (350/2984) 0 * Os_TE_60701 Os_TE_60701 Chr8 2321580 2321579 - INDITTO 263 0.1177 (351/2982) 0 * Os_TE_60702 Os_TE_60680 Chr8 2314249 2314250 + COPI2_LTR 4733 0.0003 (1/2969) 0 * * Os_TE_60674 Chr8 2308378 2308379 + ORSgTETNOOT00908 242 0.0003 (1/2991) 0 * Os_TE_60673 Os_TE_60673 Chr8 2308374 2308373 + ORSgTETNOOT01219 231 0.0003 (1/2994) 0 * Os_TE_60674 Os_TE_60650 Chr8 2301416 2301415 + F569 228 0.0003 (1/2932) 0 * * Os_TE_60624 Chr8 2294104 2294001 + TREP219 104 0.5549 (995/1793) 1 Intact * Os_TE_60619 Chr8 2293306 2293307 - ORSiTERTOOT00404 4839 0.0010 (1/1011) 0 * Os_TE_60618 Os_TE_60618 Chr8 2293302 2293301 + ORSiTERTOOT00404 4839 0.0010 (1/1009) 0 * Os_TE_60619 Os_TE_60614 Chr8 2288337 2288336 + COPIA2-LTR_OS 6433 0.0017 (5/2990) 0 * * Os_TE_60613 Chr8 2287437 2287436 - ORSgTEMT00900099 250 0.0017 (5/2942) 0 * * Os_TE_60610 Chr8 2285451 2285348 + TREP219 104 0.3384 (959/2834) 1 Intact * Os_TE_60593 Chr8 2279557 2279556 - SPMLIKE 10989 0.0003 (1/2918) 0 * * Os_TE_60588 Chr8 2276492 2276493 - COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * * Os_TE_60542 Chr8 2259620 2259619 + ORSgTEMT01602181 239 0.0406 (117/2879) 0 * * Os_TE_60517 Chr8 2252269 2252270 - ORSgTEMT01601432 239 0.0175 (49/2798) 0 * * Os_TE_60509 Chr8 2246795 2246794 - SZ-COM 1308 0.0005 (1/1984) 0 * * Os_TE_60494 Chr8 2243676 2243675 - DITAILA 257 0.0017 (5/2954) 0 * * Os_TE_60487 Chr8 2243160 2243161 - CRM-LTR_OS 7749 0.0010 (3/2932) 0 * * Os_TE_60461 Chr8 2231798 2231799 + TREP219 104 0.0226 (67/2963) 0 * * Os_TE_60453 Chr8 2231007 2231006 + ORSgTEMT00502452 153 0.0231 (69/2987) 0 * * Os_TE_60412 Chr8 2213627 2213626 + ORSgTEMT01601934 207 0.0221 (66/2990) 0 * Os_TE_60411 Os_TE_60411 Chr8 2213624 2213625 - ORSgTEMT01601696 238 0.0217 (65/2992) 0 * Os_TE_60412 Os_TE_60410 Chr8 2213605 2213606 + COPI2_LTR 4733 0.0003 (1/2989) 0 * Os_TE_60409 Os_TE_60409 Chr8 2213601 2213600 - COPI2_LTR 4733 0.0003 (1/2967) 0 * Os_TE_60410 Os_TE_60390 Chr8 2209152 2209153 - Cassandra_OS-LTR 764 0.0204 (61/2984) 0 * * Os_TE_60389 Chr8 2208700 2208699 - COPI2_LTR 4733 0.0003 (1/2997) 0 * * Os_TE_60366 Chr8 2199364 2199365 - COPIA2-LTR_OS 6433 0.0003 (1/2954) 0 * * Os_TE_60333 Chr8 2185938 2185939 + RIREX_LTR 8828 0.2212 (659/2979) 0 * Os_TE_60332 Os_TE_60332 Chr8 2185934 2185933 - RIREX_LTR 8828 0.2233 (667/2987) 0 * Os_TE_60333 Os_TE_60325 Chr8 2179726 2179727 + RIREX_LTR 8828 0.0003 (1/2990) 0 * Os_TE_60324 Os_TE_60324 Chr8 2179722 2179721 - RIREX_LTR 8828 0.0003 (1/2986) 0 * Os_TE_60325 Os_TE_60320 Chr8 2177067 2177068 - ORSgTEMT02400179 221 0.0010 (3/2876) 0 * * Os_TE_60267 Chr8 2152158 2152157 + ORSgTEMT00501072 147 0.6255 (1857/2969) 0 * * Os_TE_60242 Chr8 2139928 2139927 + COPI1_LTR 4721 0.0003 (1/2952) 0 * * Os_TE_60235 Chr8 2139087 2139088 + COPI2_LTR 4733 0.0003 (1/2984) 0 * Os_TE_60234 Os_TE_60234 Chr8 2139083 2139082 - COPI2_LTR 4733 0.0003 (1/2979) 0 * Os_TE_60235 Os_TE_60226 Chr8 2135428 2135429 - ORSgTEMT01602119 229 0.0010 (3/2892) 0 * * Os_TE_60194 Chr8 2116110 2116111 - RIREX_LTR 8828 0.0050 (15/2971) 0 * Os_TE_60193 Os_TE_60193 Chr8 2116106 2116105 + RIREX_LTR 8828 0.0050 (15/2975) 0 * Os_TE_60194 Os_TE_60188 Chr8 2114836 2114837 + COPIA2-LTR_OS 6433 0.0003 (1/2983) 0 * Os_TE_60187 Os_TE_60187 Chr8 2114832 2114831 - COPIA2-LTR_OS 6433 0.0004 (1/2852) 0 * Os_TE_60188 Os_TE_60183 Chr8 2113944 2113945 + EnSpm-13_OS 11171 0.0011 (3/2822) 0 * Os_TE_60182 Os_TE_60182 Chr8 2113942 2113941 - EnSpm-13_OS 11171 0.0011 (3/2803) 0 * Os_TE_60183 Os_TE_60164 Chr8 2107346 2103196 + SZ-48LTR 3632 0.3182 (944/2967) 1 Intact Os_TE_60160 Os_TE_60160 Chr8 2103196 2107346 - SZ-48LTR 3632 0.3165 (940/2970) 1 Intact Os_TE_60164 Os_TE_60130 Chr8 2084774 2084773 - ORSiTETNOOT00151 3651 0.0003 (1/2964) 0 * * Os_TE_60100 Chr8 2066163 2066164 - RIREX_LTR 8828 0.0003 (1/2995) 0 * Os_TE_60099 Os_TE_60099 Chr8 2066159 2066158 + RIREX_LTR 8828 0.0003 (1/2995) 0 * Os_TE_60100 Os_TE_60096 Chr8 2061967 2061968 + MUDRN2_OS 756 0.0616 (171/2777) 0 * Os_TE_60095 Os_TE_60095 Chr8 2061959 2061958 - MUDRN3_OS 903 0.0609 (168/2757) 0 * Os_TE_60096 Os_TE_60094 Chr8 2061452 2061453 - COPIA2-LTR_OS 6433 0.0014 (4/2958) 0 * Os_TE_60093 Os_TE_60093 Chr8 2061448 2061447 + COPIA2-LTR_OS 6433 0.0010 (3/2959) 0 * Os_TE_60094 Os_TE_60091 Chr8 2059843 2059844 - TRUNCATOR 2918 0.0575 (172/2989) 0 * Os_TE_60090 Os_TE_60090 Chr8 2059842 2059841 + TRUNCATOR 2918 0.0625 (187/2994) 0 * Os_TE_60091 Os_TE_60079 Chr8 2055999 2056000 + COPIA2-LTR_OS 6433 0.0007 (2/2998) 0 * * Os_TE_60068 Chr8 2053264 2049359 - SZ-35LTR 3853 0.3782 (1122/2967) 1 Intact * Os_TE_60055 Chr8 2045863 2045862 + ORSgTETN00200005 1121 0.0018 (5/2759) 0 * Os_TE_60054 Os_TE_60054 Chr8 2045862 2045863 + CACTA-I 1124 0.0018 (5/2772) 0 * Os_TE_60055 Os_TE_60040 Chr8 2040567 2040568 - ORSgTEMT02400179 221 0.1942 (575/2961) 0 * Os_TE_60039 Os_TE_60039 Chr8 2040566 2040565 - TYPEM 227 0.1936 (572/2955) 0 * Os_TE_60040 Os_TE_60033 Chr8 2033256 2033257 + ORSgTEMT00500176 153 0.7355 (2191/2979) 0 * * Os_TE_60029 Chr8 2028353 2028354 + ORSgTEMT00900082 254 0.4512 (671/1487) 0 * Os_TE_60028 Os_TE_60028 Chr8 2028350 2028349 + ORSgTEMT00900346 243 0.6999 (1852/2646) 0 * Os_TE_60029 Os_TE_60027 Chr8 2028307 2028019 - ORSgTEMT00100744 336 0.5678 (821/1446) 1 Intact * Os_TE_60007 Chr8 2015465 2015464 - SZ-38 8643 0.0003 (1/2886) 0 * * Os_TE_59990 Chr8 2006669 2006911 + STOWAWAY41_OS 264 0.4665 (1331/2853) 1 Intact * Os_TE_59988 Chr8 2006098 2006251 + STOWAWAY47_OS 148 0.4705 (1396/2967) 1 Intact * Os_TE_59986 Chr8 2006024 2006025 + MERMITEB 1610 0.5449 (1595/2927) 0 * * Os_TE_59970 Chr8 1994304 1994305 - ORSgTETNOOT01930 140 0.0734 (219/2982) 0 * Os_TE_59969 Os_TE_59969 Chr8 1994302 1994301 + ORSgTETNOOT01275 140 0.0746 (222/2976) 0 * Os_TE_59970 Os_TE_59954 Chr8 1990716 1990717 - SZ-22_LTR 4403 0.0004 (1/2797) 0 * * Os_TE_59948 Chr8 1988380 1988381 + TWIFB1 3737 0.0006 (1/1770) 0 * * Os_TE_59861 Chr8 1950918 1950919 + ORSiTERTOOT00027 10853 0.0740 (197/2661) 0 * Os_TE_59860 Os_TE_59860 Chr8 1950914 1950913 - RIRE3A_LTR 10580 0.0734 (195/2658) 0 * Os_TE_59861 Os_TE_59858 Chr8 1950826 1944419 + COPIA2-LTR_OS 6433 0.2598 (690/2656) 1 Intact Os_TE_59855 Os_TE_59855 Chr8 1944419 1950826 - COPIA2-LTR_OS 6433 0.2618 (696/2659) 1 Intact Os_TE_59858 Os_TE_59852 Chr8 1944202 1944201 - COPI2_LTR 4733 0.0008 (2/2652) 0 * * Os_TE_59848 Chr8 1939799 1939800 + F569 228 0.0018 (5/2813) 0 * Os_TE_59847 Os_TE_59847 Chr8 1939797 1939796 - F569 228 0.0015 (4/2651) 0 * Os_TE_59848 Os_TE_59802 Chr8 1900117 1911681 - RIREX_LTR 8828 0.7049 (504/715) 1 Intact * Os_TE_59796 Chr8 1897798 1897990 + ORSgTETNOOT00567 192 0.7046 (625/887) 1 Intact * Os_TE_59733 Chr8 1861309 1861310 + RIREX_LTR 8828 0.0008 (2/2563) 0 * Os_TE_59732 Os_TE_59732 Chr8 1861305 1861304 - RIREX_LTR 8828 0.0008 (2/2602) 0 * Os_TE_59733 Os_TE_59730 Chr8 1860770 1860771 + RIRE2_LTR 11306 0.0019 (5/2691) 0 * Os_TE_59729 Os_TE_59729 Chr8 1860766 1860765 - RIRE2_LTR 11306 0.0015 (4/2710) 0 * Os_TE_59730 Os_TE_59728 Chr8 1860434 1860435 + RIRE5-LTR_OS 6427 0.0004 (1/2708) 0 * * Os_TE_59722 Chr8 1859784 1859785 + ORSgTEMT00600120 364 0.0014 (4/2794) 0 * Os_TE_59721 Os_TE_59721 Chr8 1859782 1859781 - CASTAWAY 364 0.0014 (4/2792) 0 * Os_TE_59722 Os_TE_59720 Chr8 1859539 1859540 - COPIA2-LTR_OS 6433 0.0004 (1/2749) 0 * Os_TE_59719 Os_TE_59719 Chr8 1859535 1859534 + COPIA2-LTR_OS 6433 0.0004 (1/2793) 0 * Os_TE_59720 Os_TE_59718 Chr8 1859228 1859227 + OSTE1 801 0.0384 (106/2763) 0 * * Os_TE_59717 Chr8 1859211 1859212 - RETROFIT3_LTR 5391 0.2071 (579/2796) 0 * Os_TE_59716 Os_TE_59716 Chr8 1859207 1859206 + RETROFIT3_LTR 5391 0.2103 (582/2767) 0 * Os_TE_59717 Os_TE_59714 Chr8 1858015 1857277 - JOUZHEN 596 0.2218 (615/2773) 1 Intact Os_TE_59713 Os_TE_59713 Chr8 1857277 1858015 + JOUZHEN 596 0.2213 (616/2783) 1 Intact Os_TE_59714 Os_TE_59712 Chr8 1856992 1856993 - ORSiTETNOOT00134 607 0.0194 (50/2581) 0 * Os_TE_59711 Os_TE_59711 Chr8 1856985 1856984 + TWIF 586 0.0444 (119/2680) 0 * Os_TE_59712 Os_TE_59678 Chr8 1832874 1832875 - RETROSAT2LTR 12796 0.0015 (3/2036) 0 * * Os_TE_59669 Chr8 1824725 1824726 - RETRO2_LTR 12874 0.3491 (700/2005) 0 * Os_TE_59668 Os_TE_59668 Chr8 1824722 1824721 + RETRO2_LTR 12874 0.3489 (702/2012) 0 * Os_TE_59669 Os_TE_59600 Chr8 1795170 1795551 - ORSgTEMT03800066 376 0.6433 (1917/2980) 1 Intact * Os_TE_59599 Chr8 1795151 1795150 - ORSgTEMT03800066 376 0.0005 (1/1943) 0 * * Os_TE_59590 Chr8 1788560 1788561 - SZ-55_LTR 10318 0.0003 (1/2949) 0 * Os_TE_59589 Os_TE_59589 Chr8 1788556 1788555 + SZ-55_LTR 10318 0.0003 (1/2949) 0 * Os_TE_59590 Os_TE_59586 Chr8 1788083 1788084 + OSTONOR1_LTR 6440 0.1629 (479/2940) 0 * * Os_TE_59579 Chr8 1778581 1778582 - RIREX_LTR 8828 0.0003 (1/2934) 0 * Os_TE_59578 Os_TE_59578 Chr8 1778577 1778576 + RIREX_LTR 8828 0.0003 (1/2934) 0 * Os_TE_59579 Os_TE_59510 Chr8 1730691 1730690 - ORSgTEMT00901345 248 0.0187 (55/2946) 0 * Os_TE_59509 Os_TE_59509 Chr8 1730689 1730690 - ORSgTEMT00900099 250 0.0190 (56/2951) 0 * Os_TE_59510 Os_TE_59503 Chr8 1730016 1730015 + TWIF 586 0.0003 (1/2898) 0 * * Os_TE_59499 Chr8 1727397 1727159 + ORSgTEMT01602181 239 0.3685 (1093/2966) 1 Intact Os_TE_59498 Os_TE_59498 Chr8 1727159 1727397 - ORSgTEMT01601432 239 0.3698 (1099/2972) 1 Intact Os_TE_59499 Os_TE_59489 Chr8 1723331 1723330 - MERMITEH 1307 0.6312 (1823/2888) 0 * Os_TE_59488 Os_TE_59488 Chr8 1723322 1723323 - MERMITED 1572 0.6434 (1911/2970) 0 * Os_TE_59489 Os_TE_59478 Chr8 1711366 1711367 - SC-3_LTR 5748 0.0007 (2/2988) 0 * Os_TE_59477 Os_TE_59477 Chr8 1711362 1711361 + ORSiTERTOOT00296 5553 0.0007 (2/2994) 0 * Os_TE_59478 Os_TE_59467 Chr8 1705958 1705959 + MERMITEA 1710 0.3211 (944/2940) 0 * Os_TE_59466 Os_TE_59466 Chr8 1705950 1705949 + MERMITEA 1710 0.2984 (861/2885) 0 * Os_TE_59467 Os_TE_59465 Chr8 1705944 1705945 - MuDR2_OS 6770 0.0014 (4/2924) 0 * * Os_TE_59460 Chr8 1703537 1703538 - RETRO1_LTR 8314 0.0637 (180/2826) 0 * Os_TE_59459 Os_TE_59459 Chr8 1703533 1703532 + RETRO1_LTR 8314 0.0655 (190/2902) 0 * Os_TE_59460 Os_TE_59448 Chr8 1701352 1701351 + ORSgTEMT01602181 239 0.0020 (6/2931) 0 * Os_TE_59447 Os_TE_59447 Chr8 1701349 1701350 - ORSgTEMT01601432 239 0.0021 (6/2909) 0 * Os_TE_59448 Os_TE_59415 Chr8 1689149 1689150 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_59414 Os_TE_59414 Chr8 1689145 1689144 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_59415 Os_TE_59387 Chr8 1677017 1677018 - ORSgTEMT00101458 324 0.0020 (6/2982) 0 * * Os_TE_59365 Chr8 1666346 1666347 - ORSgTEMT02400179 221 0.0014 (4/2802) 0 * Os_TE_59364 Os_TE_59364 Chr8 1666345 1666344 - TYPEM 227 0.0011 (3/2726) 0 * Os_TE_59365 Os_TE_59333 Chr8 1661227 1661226 + SPMLIKE 10989 0.0017 (5/2974) 0 * * Os_TE_59332 Chr8 1661215 1661216 - ORSgTEMT01702029 126 0.6655 (1982/2978) 0 * * Os_TE_59326 Chr8 1660209 1660208 - STOWAWAY44_OS 240 0.0003 (1/2954) 0 * * Os_TE_59314 Chr8 1650117 1650118 - SC-3_LTR 5748 0.0003 (1/2991) 0 * Os_TE_59313 Os_TE_59313 Chr8 1650113 1650112 + ORSiTERTOOT00296 5553 0.0003 (1/2994) 0 * Os_TE_59314 Os_TE_59311 Chr8 1648807 1648808 + ORSiTERTOOT00366 5449 0.0003 (1/2986) 0 * Os_TE_59310 Os_TE_59310 Chr8 1648803 1648802 - ORSiTERTOOT00366 5449 0.0003 (1/2985) 0 * Os_TE_59311 Os_TE_59304 Chr8 1643647 1643648 - ORSgTEMT00600085 364 0.4992 (1478/2961) 0 * * Os_TE_59272 Chr8 1633499 1633500 + ORSiTEMT00300001 383 0.0077 (23/2969) 0 * * Os_TE_59260 Chr8 1624885 1624886 + RETROSAT2LTR 12796 0.1061 (233/2196) 0 * Os_TE_59259 Os_TE_59259 Chr8 1624883 1624882 - RETROSAT2LTR 12796 0.2908 (729/2507) 0 * Os_TE_59260 Os_TE_59247 Chr8 1622555 1622556 + COPI2_LTR 4733 0.0584 (167/2862) 0 * * Os_TE_59227 Chr8 1615081 1615082 - RETRO2_LTR 12874 0.0091 (25/2753) 0 * * Os_TE_59211 Chr8 1604715 1604716 + F569 228 0.0020 (6/2995) 0 * Os_TE_59210 Os_TE_59210 Chr8 1604713 1604712 - F569 228 0.0020 (6/2977) 0 * Os_TE_59211 Os_TE_59205 Chr8 1601734 1601733 + AMYLTP 383 0.0003 (1/2997) 0 * * Os_TE_59199 Chr8 1599213 1599214 + ORSiTERTOOT00226 792 0.0742 (221/2979) 0 * Os_TE_59198 Os_TE_59198 Chr8 1599209 1599208 - SZ-22_LTR 4403 0.0750 (224/2985) 0 * Os_TE_59199 Os_TE_59182 Chr8 1595419 1595420 - ORSgTEMT00200185 144 0.0024 (7/2898) 0 * Os_TE_59181 Os_TE_59181 Chr8 1595412 1595411 - ORSgTEMT01700299 212 0.0024 (7/2914) 0 * Os_TE_59182 Os_TE_59132 Chr8 1576263 1576264 - STOLAB 312 0.0020 (6/2959) 0 * * Os_TE_59131 Chr8 1575905 1575906 + HARB-1_OS 5166 0.0452 (134/2963) 0 * Os_TE_59130 Os_TE_59130 Chr8 1575903 1575902 - HARB-1_OS 5166 0.0447 (133/2973) 0 * Os_TE_59131 Os_TE_59128 Chr8 1575757 1575756 - INDITTO 263 0.0007 (2/2992) 0 * * Os_TE_59102 Chr8 1556561 1556412 - ORSgTEMT00502293 151 0.5016 (1448/2887) 1 Intact * Os_TE_59097 Chr8 1555725 1555724 + ORSgTEMT00502025 149 0.5265 (1570/2982) 0 * Os_TE_59096 Os_TE_59096 Chr8 1555724 1555725 + ORSgTEMT00501993 146 0.5273 (1575/2987) 0 * Os_TE_59097 Os_TE_59088 Chr8 1553385 1553384 + ORSgTERT00200392 431 0.0004 (1/2715) 0 * * Os_TE_59082 Chr8 1551920 1551921 - ORSgTETNOOT00118 134 0.4748 (1416/2982) 0 * Os_TE_59081 Os_TE_59081 Chr8 1551918 1551917 + ORSgTETNOOT01930 140 0.4769 (1423/2984) 0 * Os_TE_59082 Os_TE_59080 Chr8 1551805 1551664 + ORSgTEMT00501934 148 0.5829 (1557/2671) 1 Intact * Os_TE_59072 Chr8 1550498 1550830 + OLO24 345 0.4430 (1166/2632) 1 Intact * Os_TE_59069 Chr8 1549816 1549817 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * * Os_TE_59068 Chr8 1549703 1548703 - COPIA2-LTR_OS 6433 0.4017 (1195/2975) 1 Solo_LTR * Os_TE_59057 Chr8 1545137 1545138 + SZ-52_LTR 13107 0.0007 (2/2982) 0 * Os_TE_59056 Os_TE_59056 Chr8 1545133 1545132 - SZ-52_LTR 13107 0.0007 (2/2972) 0 * Os_TE_59057 Os_TE_59055 Chr8 1544253 1544254 - MDR2 6967 0.0236 (67/2843) 0 * * Os_TE_59050 Chr8 1542779 1542549 + ORSgTEMT01601525 239 0.3906 (1111/2844) 1 Intact * Os_TE_59046 Chr8 1540579 1540580 - LINE-6_OS 4886 0.1464 (436/2978) 0 * * Os_TE_59036 Chr8 1534243 1534244 - COPI2_LTR 4733 0.0008 (2/2470) 0 * * Os_TE_59032 Chr8 1533985 1533986 - RETROSAT3_LTR 11537 0.0004 (1/2835) 0 * * Os_TE_59006 Chr8 1525240 1525241 - TELIA 141 0.0007 (2/2973) 0 * Os_TE_59005 Os_TE_59005 Chr8 1525232 1525231 + TELIA 141 0.0007 (2/2983) 0 * Os_TE_59006 Os_TE_59003 Chr8 1525068 1525069 + ORSgTEMT00900319 250 0.0014 (4/2931) 0 * * Os_TE_58998 Chr8 1524224 1524223 + F770 284 0.2354 (688/2923) 0 * * Os_TE_58996 Chr8 1523961 1523738 - ORSgTEMT01602521 238 0.7102 (2039/2871) 1 Intact * Os_TE_58993 Chr8 1523708 1523709 + ORSiTERTOOT00034 791 0.0015 (3/2050) 0 * * Os_TE_58985 Chr8 1523245 1523387 + ORSgTEMT00502327 143 0.7258 (2094/2885) 1 Intact * Os_TE_58983 Chr8 1522991 1522744 + ORSgTEMT00901844 250 0.7137 (2104/2948) 1 Intact Os_TE_58982 Os_TE_58982 Chr8 1522744 1522990 + ORSgTEMT00901212 247 0.7066 (2105/2979) 1 Intact Os_TE_58983 Os_TE_58970 Chr8 1521637 1521636 - ORSgTEMT00501204 149 0.2899 (829/2860) 0 * * Os_TE_58957 Chr8 1519210 1519209 + STOWAWAY21_OS 243 0.0004 (1/2852) 0 * Os_TE_58956 Os_TE_58956 Chr8 1519209 1519210 + ORSgTEMT01601122 212 0.0003 (1/2980) 0 * Os_TE_58957 Os_TE_58944 Chr8 1517714 1517942 - STOWAWAY41_OS 264 0.7103 (2106/2965) 1 Intact * Os_TE_58941 Chr8 1515151 1515442 + STOWAWAY11_OS 292 0.7093 (2081/2934) 1 Intact * Os_TE_58935 Chr8 1512949 1512948 + ORSiTERTOOT00404 4839 0.0220 (64/2910) 0 * * Os_TE_58932 Chr8 1510575 1510576 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_58931 Os_TE_58931 Chr8 1510571 1510570 + COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_58932 Os_TE_58930 Chr8 1510350 1509973 + TYPEU2 382 0.7100 (2120/2986) 1 Intact Os_TE_58928 Os_TE_58928 Chr8 1509972 1510348 - TYPEU1 380 0.8952 (2101/2347) 1 Intact Os_TE_58930 Os_TE_58927 Chr8 1509594 1509593 + ORSgTEMT01700741 196 0.1074 (255/2375) 0 * * Os_TE_58923 Chr8 1508220 1508221 + NDNA1TNA_OS 334 0.0004 (1/2721) 0 * * Os_TE_58914 Chr8 1506332 1506333 + RIREX_LTR 8828 0.0020 (6/2994) 0 * Os_TE_58913 Os_TE_58913 Chr8 1506328 1506327 - RIREX_LTR 8828 0.0020 (6/2993) 0 * Os_TE_58914 Os_TE_58911 Chr8 1504845 1504846 - AMYLTP 383 0.0779 (231/2966) 0 * * Os_TE_58909 Chr8 1503202 1503201 - NDNA1TNA_OS 334 0.0017 (5/2959) 0 * * Os_TE_58901 Chr8 1501002 1501001 - TRUNCATOR 2918 0.2410 (658/2730) 0 * * Os_TE_58873 Chr8 1488940 1488939 - RIRE3_LTR 12054 0.0101 (27/2683) 0 * * Os_TE_58869 Chr8 1488477 1488478 - ORSiTERT00200154 9386 0.2399 (652/2718) 0 * * Os_TE_58860 Chr8 1487103 1487104 - RIREX_LTR 8828 0.1378 (373/2707) 0 * Os_TE_58859 Os_TE_58859 Chr8 1487100 1487099 + RIREX_LTR 8828 0.1388 (377/2716) 0 * Os_TE_58860 Os_TE_58812 Chr8 1471357 1471356 - RETRO2_LTR 12874 0.0049 (13/2671) 0 * * Os_TE_58809 Chr8 1465756 1465755 - RIREX_LTR 8828 0.0224 (30/1342) 0 * * Os_TE_58800 Chr8 1463151 1463152 + RIREX_LTR 8828 0.0005 (1/1975) 0 * Os_TE_58799 Os_TE_58799 Chr8 1463147 1463146 - RIREX_LTR 8828 0.0005 (1/1974) 0 * Os_TE_58800 Os_TE_58796 Chr8 1461463 1461464 + SPMLIKE 10989 0.0132 (26/1967) 0 * Os_TE_58795 Os_TE_58795 Chr8 1461461 1461460 - ORSgTETN00200001 10994 0.0122 (24/1964) 0 * Os_TE_58796 Os_TE_58778 Chr8 1444932 1420867 + TRUNCATOR 2918 0.8038 (979/1218) 1 Intact * Os_TE_58578 Chr8 1336247 1336246 - ORSgTEMT01701302 154 0.5116 (1390/2717) 0 * Os_TE_58577 Os_TE_58577 Chr8 1336242 1336243 - ORSgTEMT01701348 105 0.5586 (1534/2746) 0 * Os_TE_58578 Os_TE_58545 Chr8 1314726 1314727 - RIREX_LTR 8828 0.0003 (1/2996) 0 * * Os_TE_58538 Chr8 1310625 1310624 - ORSgTEMT01602413 239 0.0018 (4/2199) 0 * * Os_TE_58535 Chr8 1309947 1309946 + ORSgTEMT01601591 242 0.1126 (211/1874) 0 * * Os_TE_58534 Chr8 1309824 1309823 + ORSgTEMT01602250 243 0.0015 (4/2590) 0 * * Os_TE_58501 Chr8 1293424 1293425 + RIREX_LTR 8828 0.0003 (1/2990) 0 * Os_TE_58500 Os_TE_58500 Chr8 1293420 1293419 - RIREX_LTR 8828 0.0003 (1/2991) 0 * Os_TE_58501 Os_TE_58497 Chr8 1292853 1292854 + SPMLIKE 10989 0.0023 (5/2188) 0 * Os_TE_58496 Os_TE_58496 Chr8 1292851 1292850 - ORSgTETN00200001 10994 0.0014 (4/2926) 0 * Os_TE_58497 Os_TE_58494 Chr8 1291219 1291218 + SPMLIKE 10989 0.2210 (662/2996) 0 * * Os_TE_58474 Chr8 1277646 1277403 - TESS 244 0.2408 (704/2923) 1 Intact Os_TE_58473 Os_TE_58473 Chr8 1277403 1277646 + ORSgTETNOOT01668 244 0.2462 (722/2932) 1 Intact Os_TE_58474 Os_TE_58454 Chr8 1250827 1250828 + RETRO1_LTR 8314 0.0013 (1/799) 0 * * Os_TE_58438 Chr8 1244613 1244612 - RETROSAT5_LTR 13878 0.0012 (1/802) 0 * * Os_TE_58428 Chr8 1234452 1231069 - TRUNCATOR2_LTR 2904 0.7099 (788/1110) 1 Intact Os_TE_58425 Os_TE_58425 Chr8 1231069 1234452 + ORSiCMCM00100019 2717 0.6990 (757/1083) 1 Intact Os_TE_58428 Os_TE_58415 Chr8 1226400 1226399 - ORSgTEMT02400179 221 0.0003 (1/2937) 0 * * Os_TE_58412 Chr8 1225346 1225347 + CRATA 4786 0.0007 (2/2747) 0 * * Os_TE_58377 Chr8 1211015 1211016 - DNAUN1_OS 408 0.0010 (3/2965) 0 * * Os_TE_58367 Chr8 1204911 1204912 - F569 228 0.0017 (5/2991) 0 * * Os_TE_58354 Chr8 1196728 1196729 - HARB-1_OS 5166 0.0863 (258/2989) 0 * Os_TE_58353 Os_TE_58353 Chr8 1196726 1196725 + HARB-1_OS 5166 0.0856 (256/2991) 0 * Os_TE_58354 Os_TE_58350 Chr8 1195838 1195839 - GAIJIN 147 0.0020 (6/2990) 0 * Os_TE_58349 Os_TE_58349 Chr8 1195836 1195835 + GAIJIN 147 0.0017 (5/2983) 0 * Os_TE_58350 Os_TE_58338 Chr8 1191529 1192840 + MERMITEB 1610 0.7933 (1892/2385) 1 Intact * Os_TE_58337 Chr8 1191353 1191127 - STOWAWAY41_OS 264 0.7425 (2134/2874) 1 Intact * Os_TE_58334 Chr8 1190666 1190667 - SZ-5LTR 1223 0.3009 (775/2576) 0 * * Os_TE_58333 Chr8 1190643 1190644 + CASTAWAY 364 0.6211 (1310/2109) 0 * * Os_TE_58331 Chr8 1190167 1190166 - RETROSAT2LTR 12796 0.6751 (1446/2142) 0 * * Os_TE_58321 Chr8 1181097 1181096 - ORSgTETN00200001 10994 0.0227 (51/2244) 0 * * Os_TE_58287 Chr8 1159856 1159855 - MERMITEA 1710 0.2432 (473/1945) 0 * * Os_TE_58273 Chr8 1154846 1154845 - COPI2_LTR 4733 0.0007 (1/1514) 0 * * Os_TE_58269 Chr8 1154437 1154436 - ORSgTETNOOT00303 256 0.0160 (25/1567) 0 * * Os_TE_58266 Chr8 1154068 1154069 + RIRE2_LTR 11306 0.0026 (4/1561) 0 * Os_TE_58265 Os_TE_58265 Chr8 1154064 1154063 - RIRE2_LTR 11306 0.0026 (4/1564) 0 * Os_TE_58266 Os_TE_58263 Chr8 1153893 1153894 - DITTO-2 235 0.0006 (1/1550) 0 * * Os_TE_58234 Chr8 1143035 1143034 - TRUNCATOR 2918 0.0004 (1/2803) 0 * * Os_TE_58221 Chr8 1141435 1141156 - ORSgTEMT05200112 272 0.4371 (1302/2979) 1 Intact Os_TE_58216 Os_TE_58216 Chr8 1141152 1141436 - YOUREN 286 0.4411 (1315/2981) 1 Intact Os_TE_58221 Os_TE_58215 Chr8 1140745 1140746 - COPI2_LTR 4733 0.1652 (491/2973) 0 * Os_TE_58214 Os_TE_58214 Chr8 1140741 1140740 + COPI2_LTR 4733 0.1017 (282/2773) 0 * Os_TE_58215 Os_TE_58211 Chr8 1137468 1137469 - MPING 430 0.0003 (1/2970) 0 * Os_TE_58210 Os_TE_58210 Chr8 1137466 1137465 + MPING 430 0.0003 (1/2976) 0 * Os_TE_58211 Os_TE_58209 Chr8 1137310 1137309 - MERMITE18D 1491 0.0024 (7/2943) 0 * * Os_TE_58182 Chr8 1126953 1126952 - NDNA1TNA_OS 334 0.0060 (18/2979) 0 * * Os_TE_58177 Chr8 1121635 1121634 + ORSgTEMT04600010 284 0.0030 (9/2989) 0 * * Os_TE_58165 Chr8 1115873 1115874 + CASINE 174 0.0027 (8/2996) 0 * * Os_TE_58160 Chr8 1108799 1108798 + ORSgTEMT01400031 216 0.0023 (7/2983) 0 * * Os_TE_58102 Chr8 1078564 1078927 - CASTAWAY 364 0.8661 (2567/2964) 1 Intact * Os_TE_58100 Chr8 1078087 1078086 - ORSgTEMT02400148 214 0.0003 (1/2972) 0 * Os_TE_58099 Os_TE_58099 Chr8 1078086 1078087 - TYPEM 227 0.0003 (1/2976) 0 * Os_TE_58100 Os_TE_58098 Chr8 1078039 1078038 + STOWAWAY51_OS 246 0.0010 (3/2968) 0 * Os_TE_58097 Os_TE_58097 Chr8 1078033 1078034 - STOWAWAY51_OS 246 0.0010 (3/2958) 0 * Os_TE_58098 Os_TE_58068 Chr8 1072200 1072201 + CASTAWAY 364 0.0017 (5/2932) 0 * * Os_TE_58065 Chr8 1070580 1070579 + SPMLIKE 10989 0.0731 (217/2968) 0 * * Os_TE_58049 Chr8 1065063 1065064 - COPIA2-LTR_OS 6433 0.0003 (1/2945) 0 * * Os_TE_58047 Chr8 1065048 1065049 - SZ-22_LTR 4403 0.0031 (9/2947) 0 * Os_TE_58046 Os_TE_58046 Chr8 1065044 1065043 + ORSiTERTOOT00226 792 0.0031 (9/2947) 0 * Os_TE_58047 Os_TE_58018 Chr8 1056677 1056678 + RIREX_LTR 8828 0.0004 (1/2846) 0 * Os_TE_58017 Os_TE_58017 Chr8 1056673 1056672 - RIREX_LTR 8828 0.0004 (1/2626) 0 * Os_TE_58018 Os_TE_57991 Chr8 1040175 1040176 - OSTONOR1_LTR 6440 0.0696 (208/2987) 0 * Os_TE_57990 Os_TE_57990 Chr8 1040171 1040170 + OSTONOR1_LTR 6440 0.0687 (205/2986) 0 * Os_TE_57991 Os_TE_57965 Chr8 1032588 1032589 + F770 284 0.0020 (6/2970) 0 * Os_TE_57964 Os_TE_57964 Chr8 1032586 1032585 - F770 284 0.0017 (5/2966) 0 * Os_TE_57965 Os_TE_57963 Chr8 1032313 1032314 + ORSiTERTOOT00074 4935 0.0007 (2/2965) 0 * Os_TE_57962 Os_TE_57962 Chr8 1032309 1032308 - ORSiTERTOOT00074 4935 0.0007 (2/2954) 0 * Os_TE_57963 Os_TE_57961 Chr8 1032228 1032229 - SZ-22_LTR 4403 0.0003 (1/2970) 0 * Os_TE_57960 Os_TE_57960 Chr8 1032224 1032223 + ORSiTERTOOT00226 792 0.0003 (1/2978) 0 * Os_TE_57961 Os_TE_57917 Chr8 1024238 1024237 - RETRO2_LTR 12874 0.0003 (1/2961) 0 * * Os_TE_57899 Chr8 1020101 1019672 + MPING 430 0.0436 (130/2982) 1 Intact Os_TE_57898 Os_TE_57898 Chr8 1019672 1020101 - MPING 430 0.0442 (132/2988) 1 Intact Os_TE_57899 Os_TE_57891 Chr8 1017267 1017268 - MPING 430 0.0004 (1/2836) 0 * Os_TE_57890 Os_TE_57890 Chr8 1017265 1017264 + MPING 430 0.0003 (1/2890) 0 * Os_TE_57891 Os_TE_57884 Chr8 1012453 1012454 + MPING 430 0.0054 (16/2982) 0 * Os_TE_57883 Os_TE_57883 Chr8 1012451 1012450 - MPING 430 0.0054 (16/2986) 0 * Os_TE_57884 Os_TE_57833 Chr8 975513 975512 + ORSgTEMT01601591 242 0.0171 (51/2974) 0 * Os_TE_57832 Os_TE_57832 Chr8 975507 975508 + STOWAWAY51_OS 246 0.0172 (51/2972) 0 * Os_TE_57833 Os_TE_57823 Chr8 972424 972425 + RIREX_LTR 8828 0.0007 (2/2993) 0 * Os_TE_57822 Os_TE_57822 Chr8 972420 972419 - RIREX_LTR 8828 0.0007 (2/2989) 0 * Os_TE_57823 Os_TE_57821 Chr8 972272 972273 - MPING 430 0.0007 (2/2997) 0 * Os_TE_57820 Os_TE_57820 Chr8 972270 972269 + MPING 430 0.0007 (2/2996) 0 * Os_TE_57821 Os_TE_57815 Chr8 970265 970266 + TWIF 586 0.0003 (1/2993) 0 * Os_TE_57814 Os_TE_57814 Chr8 970258 970257 - ORSiTETNOOT00134 607 0.0003 (1/2991) 0 * Os_TE_57815 Os_TE_57807 Chr8 966403 966404 + MPING 430 0.0003 (1/2969) 0 * * Os_TE_57800 Chr8 961670 961669 + ORSgTEMT00700017 386 0.0180 (54/2998) 0 * * Os_TE_57788 Chr8 953620 953619 - SZ-7A_LTR 11400 0.0003 (1/2983) 0 * * Os_TE_57764 Chr8 945883 945884 + STOWAWAY51_OS 246 0.0010 (3/2985) 0 * * Os_TE_57759 Chr8 942634 942635 + NDNA1TNA_OS 334 0.0083 (25/2995) 0 * Os_TE_57758 Os_TE_57758 Chr8 942632 942631 - NDNA1TNA_OS 334 0.0084 (25/2993) 0 * Os_TE_57759 Os_TE_57703 Chr8 917323 917322 + SC-8_LTR 4951 0.0003 (1/2993) 0 * * Os_TE_57688 Chr8 903976 903975 - MERMITEA 1710 0.0003 (1/2995) 0 * * Os_TE_57681 Chr8 902168 902167 + OSTE18 129 0.0017 (5/2984) 0 * * Os_TE_57671 Chr8 899098 899097 + TWIFB1 3737 0.0003 (1/2936) 0 * * Os_TE_57666 Chr8 895800 895801 - SC-3_LTR 5748 0.0003 (1/2997) 0 * Os_TE_57665 Os_TE_57665 Chr8 895796 895795 + ORSiTERTOOT00296 5553 0.0003 (1/2995) 0 * Os_TE_57666 Os_TE_57660 Chr8 891078 891077 - ORSgTEMT00100296 161 0.0013 (4/2980) 0 * * Os_TE_57608 Chr8 871811 871810 + STOWAWAY51_OS 246 0.0003 (1/2964) 0 * Os_TE_57607 Os_TE_57607 Chr8 871805 871806 - STOWAWAY51_OS 246 0.0003 (1/2967) 0 * Os_TE_57608 Os_TE_57598 Chr8 869146 869147 + COPIA2-LTR_OS 6433 0.0010 (3/2993) 0 * Os_TE_57597 Os_TE_57597 Chr8 869142 869141 - COPIA2-LTR_OS 6433 0.0010 (3/2993) 0 * Os_TE_57598 Os_TE_57595 Chr8 868064 868065 - OSR42_LTR 5605 0.0546 (160/2932) 0 * Os_TE_57594 Os_TE_57594 Chr8 868060 868059 + OSR42_LTR 5605 0.0538 (158/2936) 0 * Os_TE_57595 Os_TE_57550 Chr8 852929 852928 - STOWAWAY50_OS 174 0.0003 (1/2920) 0 * * Os_TE_57532 Chr8 842343 842344 - MPING 430 0.0013 (4/2978) 0 * Os_TE_57531 Os_TE_57531 Chr8 842341 842340 + MPING 430 0.0013 (4/2982) 0 * Os_TE_57532 Os_TE_57530 Chr8 841665 841666 + RETROSAT4_LTR 13504 0.0003 (1/2933) 0 * Os_TE_57529 Os_TE_57529 Chr8 841661 841660 - SZ-35LTR 3853 0.0003 (1/2936) 0 * Os_TE_57530 Os_TE_57518 Chr8 839663 839664 + COPI2_LTR 4733 0.0003 (1/2985) 0 * * Os_TE_57515 Chr8 839498 839497 - CASTAWAY 364 0.0003 (1/2978) 0 * * Os_TE_57509 Chr8 838525 838526 - SZ-22_LTR 4403 0.0003 (1/2985) 0 * * Os_TE_57508 Chr8 838360 838359 - ORSgTEMT01602404 253 0.0017 (5/2983) 0 * * Os_TE_57487 Chr8 830838 830839 + ORSgTEMT01601591 242 0.0003 (1/2988) 0 * * Os_TE_57482 Chr8 829801 829800 - TEMPINDAS 4259 0.0013 (4/2972) 0 * * Os_TE_57447 Chr8 823384 823385 + RIREX_LTR 8828 0.0017 (5/2977) 0 * Os_TE_57446 Os_TE_57446 Chr8 823380 823379 - RIREX_LTR 8828 0.0017 (5/2974) 0 * Os_TE_57447 Os_TE_57442 Chr8 819057 819058 + RIREX_LTR 8828 0.0010 (3/2980) 0 * Os_TE_57441 Os_TE_57441 Chr8 819053 819052 - RIREX_LTR 8828 0.0010 (3/2982) 0 * Os_TE_57442 Os_TE_57426 Chr8 811048 811049 + COPIA2-LTR_OS 6433 0.0004 (1/2845) 0 * * Os_TE_57413 Chr8 805286 805287 - OsSN3 183 0.0018 (5/2839) 0 * Os_TE_57412 Os_TE_57412 Chr8 805276 805275 + OsSN3 183 0.0014 (4/2822) 0 * Os_TE_57413 Os_TE_57407 Chr8 803704 803705 + OLO24 345 0.0203 (60/2953) 0 * * Os_TE_57389 Chr8 801796 801797 + MUDRN5_OS 374 0.0003 (1/2966) 0 * * Os_TE_57384 Chr8 801305 801306 - ORSgTEMT00501447 126 0.0050 (15/2975) 0 * * Os_TE_57381 Chr8 797874 797875 - Hopscotch_LTR 4876 0.0221 (62/2803) 0 * * Os_TE_57377 Chr8 795255 795256 - ORSgTEMT00900099 250 0.0047 (14/2989) 0 * * Os_TE_57374 Chr8 794867 794868 - ORSgTEMT00900965 216 0.0020 (6/2972) 0 * * Os_TE_57373 Chr8 794648 794649 - ORSgTEMT00900760 239 0.0040 (12/2989) 0 * * Os_TE_57343 Chr8 778589 778590 + RETRO2A_LTR 12895 0.0034 (10/2971) 0 * * Os_TE_57339 Chr8 777877 777878 + ORSgTETNOOT00193 241 0.0050 (15/2972) 0 * * Os_TE_57315 Chr8 774667 774668 + TELIA 141 0.0053 (15/2815) 0 * Os_TE_57314 Os_TE_57314 Chr8 774659 774658 - TELIA 141 0.0053 (15/2804) 0 * Os_TE_57315 Os_TE_57312 Chr8 774544 774543 - RETRO1_LTR 8314 0.0056 (15/2684) 0 * * Os_TE_57300 Chr8 772312 772311 - SZ-35LTR 3853 0.1551 (461/2972) 0 * * Os_TE_57289 Chr8 767640 767641 + COPI2_LTR 4733 0.0007 (2/2962) 0 * * Os_TE_57287 Chr8 766716 766715 + SINE1OS 127 0.0050 (15/2993) 0 * * Os_TE_57285 Chr8 766452 766453 + MERMITEB 1610 0.0047 (14/2986) 0 * Os_TE_57284 Os_TE_57284 Chr8 766448 766447 + MERMITEB 1610 0.0047 (14/2990) 0 * Os_TE_57285 Os_TE_57281 Chr8 763059 763060 + STOWAWAY44_OS 240 0.0020 (6/2976) 0 * * Os_TE_57272 Chr8 762255 762254 - ORSgTEMT00900563 246 0.0050 (15/2979) 0 * Os_TE_57271 Os_TE_57271 Chr8 762251 762252 - ORSgTEMT00900099 250 0.0050 (15/2977) 0 * Os_TE_57272 Os_TE_57246 Chr8 751135 749640 - MERMITED 1572 0.7954 (2352/2957) 1 Intact Os_TE_57245 Os_TE_57245 Chr8 749640 751132 + MERMITED 1572 0.7717 (2136/2768) 1 Intact Os_TE_57246 Os_TE_57242 Chr8 749167 749168 + STOWAWAY21_OS 243 0.0048 (14/2913) 0 * * Os_TE_57236 Chr8 747741 747742 + COPI2_LTR 4733 0.0007 (2/2955) 0 * Os_TE_57235 Os_TE_57235 Chr8 747737 747736 - COPI2_LTR 4733 0.0007 (2/2968) 0 * Os_TE_57236 Os_TE_57233 Chr8 746475 746476 - RIREX_LTR 8828 0.0003 (1/2990) 0 * * Os_TE_57227 Chr8 745533 745534 - ORSiTETNOOT00134 607 0.0003 (1/2995) 0 * * Os_TE_57223 Chr8 739488 739487 - ORSgTEMT01700203 133 0.0050 (15/2991) 0 * Os_TE_57222 Os_TE_57222 Chr8 739485 739486 - ORSgTEMT01702045 137 0.0050 (15/2995) 0 * Os_TE_57223 Os_TE_57220 Chr8 738590 738591 + SINE1OS 127 0.0254 (76/2989) 0 * Os_TE_57219 Os_TE_57219 Chr8 738572 738571 - SINE6_OS 119 0.0251 (75/2985) 0 * Os_TE_57220 Os_TE_57204 Chr8 734698 734697 - RIREX_LTR 8828 0.0055 (16/2914) 0 * * Os_TE_57187 Chr8 728328 728327 - LINE-4_OS 3662 0.0219 (65/2973) 0 * * Os_TE_57182 Chr8 726001 726000 + RETROSAT4_LTR 13504 0.6919 (1895/2739) 0 * * Os_TE_57140 Chr8 712044 712045 - SC-8_LTR 4951 0.0057 (17/2988) 0 * Os_TE_57139 Os_TE_57139 Chr8 712040 712039 + SC-8_LTR 4951 0.0057 (17/2992) 0 * Os_TE_57140 Os_TE_57130 Chr8 704325 704326 - TYPEM 227 0.0221 (65/2944) 0 * * Os_TE_57121 Chr8 702094 702095 - INDITTO 263 0.0034 (10/2956) 0 * * Os_TE_57113 Chr8 699472 699471 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * * Os_TE_57112 Chr8 698960 698961 - MuDR2_OS 6770 0.0003 (1/2989) 0 * * Os_TE_57094 Chr8 693158 693159 + ORSiTERTOOT00392 5205 0.0003 (1/2994) 0 * * Os_TE_57066 Chr8 677785 677784 - TESS 244 0.1056 (315/2983) 0 * * Os_TE_57051 Chr8 669409 669410 + OSTE33 1012 0.1230 (365/2968) 0 * Os_TE_57050 Os_TE_57050 Chr8 669400 669399 + OSTE33 1012 0.1333 (398/2985) 0 * Os_TE_57051 Os_TE_57044 Chr8 667834 667835 + ORSgTERT00200981 4035 0.0004 (1/2665) 0 * * Os_TE_57034 Chr8 658318 658317 + OSTE15 1168 0.0003 (1/2994) 0 * * Os_TE_56952 Chr8 620537 621050 - CLOUD-6 508 0.6901 (1100/1594) 0.73 Intact * Os_TE_56889 Chr8 601515 601516 + TWIF 586 0.0004 (1/2840) 0 * * Os_TE_56879 Chr8 598622 598621 - RETROSAT4_LTR 13504 0.4634 (601/1297) 0 * * Os_TE_56851 Chr8 590708 590709 - INDITTO 263 0.0030 (7/2360) 0 * * Os_TE_56845 Chr8 589574 589575 - RETROSAT2LTR 12796 0.0528 (156/2957) 0 * * Os_TE_56841 Chr8 588652 588408 + STOWAWAY51_OS 246 0.3181 (942/2961) 0.83 Intact * Os_TE_56833 Chr8 587548 587549 + MPING 430 0.0003 (1/2966) 0 * Os_TE_56832 Os_TE_56832 Chr8 587546 587545 - MPING 430 0.0003 (1/2956) 0 * Os_TE_56833 Os_TE_56819 Chr8 586034 586033 + COPIA2-LTR_OS 6433 0.0030 (9/2991) 0 * * Os_TE_56812 Chr8 581812 581811 - TNR1 237 0.6878 (2055/2988) 0 * * Os_TE_56805 Chr8 572418 572417 - OSLINE1-4 4779 0.0020 (6/2984) 0 * * Os_TE_56803 Chr8 571245 571244 + SZ-39LTR 948 0.0022 (6/2673) 0 * * Os_TE_56777 Chr8 559488 559489 - RIRE2_LTR 11306 0.0910 (258/2836) 0 * * Os_TE_56755 Chr8 550688 550689 - STOWAWAY51_OS 246 0.0455 (135/2969) 0 * * Os_TE_56719 Chr8 541648 541649 + HARB-1_OS 5166 0.0003 (1/2983) 0 * Os_TE_56718 Os_TE_56718 Chr8 541646 541645 - HARB-1_OS 5166 0.0003 (1/2978) 0 * Os_TE_56719 Os_TE_56692 Chr8 523878 523879 - COPI2_LTR 4733 0.0017 (5/2934) 0 * Os_TE_56691 Os_TE_56691 Chr8 523874 523873 + COPI2_LTR 4733 0.0014 (4/2927) 0 * Os_TE_56692 Os_TE_56690 Chr8 523639 523640 - INDITTO 263 0.0003 (1/2980) 0 * * Os_TE_56684 Chr8 517487 517488 + SC-8_LTR 4951 0.0010 (3/2976) 0 * Os_TE_56683 Os_TE_56683 Chr8 517483 517482 - SC-8_LTR 4951 0.0010 (3/2976) 0 * Os_TE_56684 Os_TE_56680 Chr8 511024 511025 + INDITTO 263 0.0415 (123/2965) 0 * Os_TE_56679 Os_TE_56679 Chr8 511022 511021 - INDITTO 263 0.0405 (120/2965) 0 * Os_TE_56680 Os_TE_56676 Chr8 508772 508664 + SINE1OS 127 0.2660 (788/2962) 1 Intact * Os_TE_56651 Chr8 501729 501728 - STOWAWAY17_OS 259 0.0003 (1/2977) 0 * * Os_TE_56582 Chr8 452019 452020 - SC-3_LTR 5748 0.0020 (6/2982) 0 * Os_TE_56581 Os_TE_56581 Chr8 452015 452014 + ORSiTERTOOT00296 5553 0.0020 (6/2986) 0 * Os_TE_56582 Os_TE_56575 Chr8 449006 449007 - SC-8_LTR 4951 0.0003 (1/2993) 0 * Os_TE_56574 Os_TE_56574 Chr8 449002 449001 + SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_56575 Os_TE_56571 Chr8 445545 445546 + MPING 430 0.0003 (1/2966) 0 * * Os_TE_56551 Chr8 438579 438580 - INDITTO 263 0.4469 (1335/2987) 0 * Os_TE_56550 Os_TE_56550 Chr8 438577 438576 + INDITTO 263 0.4511 (1348/2988) 0 * Os_TE_56551 Os_TE_56540 Chr8 432249 432248 + STOWAWAY51_OS 246 0.0017 (5/2993) 0 * Os_TE_56539 Os_TE_56539 Chr8 432240 432241 - TNR11 811 0.0017 (5/2993) 0 * Os_TE_56540 Os_TE_56517 Chr8 424736 424735 - ORSgTEMT02900061 318 0.6880 (2040/2965) 0 * * Os_TE_56516 Chr8 424556 424557 - INDITTO 263 0.1141 (340/2980) 0 * Os_TE_56515 Os_TE_56515 Chr8 424554 424553 + INDITTO 263 0.1148 (342/2978) 0 * Os_TE_56516 Os_TE_56514 Chr8 423961 423962 - SETARIA 1402 0.0003 (1/2987) 0 * * Os_TE_56498 Chr8 418315 418314 - STOWAWAY51_OS 246 0.0003 (1/2988) 0 * * Os_TE_56467 Chr8 403166 403167 + COPIA2-LTR_OS 6433 0.0074 (22/2980) 0 * Os_TE_56466 Os_TE_56466 Chr8 403162 403161 - COPIA2-LTR_OS 6433 0.0074 (22/2981) 0 * Os_TE_56467 Os_TE_56460 Chr8 402046 402284 + ORSgTEMT01602051 240 0.8721 (2604/2986) 1 Intact * Os_TE_56445 Chr8 384038 384039 - ORSiTETNOOT00216 3569 0.0003 (1/2987) 0 * * Os_TE_56441 Chr8 381121 381120 - SC-3_LTR 5748 0.3947 (1179/2987) 0 * * Os_TE_56431 Chr8 371392 371393 + ORSgTETNOOT01834 251 0.0003 (1/2977) 0 * Os_TE_56430 Os_TE_56430 Chr8 371390 371389 + ORSgTETNOOT01998 254 0.0003 (1/2979) 0 * Os_TE_56431 Os_TE_56423 Chr8 368734 368733 - SC-3_LTR 5748 0.0003 (1/2995) 0 * * Os_TE_56416 Chr8 364559 364558 - SC-3_LTR 5748 0.0003 (1/2993) 0 * * Os_TE_56412 Chr8 356770 356771 + MPING 430 0.0004 (1/2583) 0 * Os_TE_56411 Os_TE_56411 Chr8 356768 356767 - MPING 430 0.0003 (1/2969) 0 * Os_TE_56412 Os_TE_56409 Chr8 356134 355578 + CLOUD-3 550 0.2664 (793/2977) 1 Intact Os_TE_56408 Os_TE_56408 Chr8 355578 356134 - MUDROS1 4932 0.2646 (783/2959) 1 Intact Os_TE_56409 Os_TE_56405 Chr8 348702 348703 + MDR2 6967 0.0027 (8/2985) 0 * Os_TE_56404 Os_TE_56404 Chr8 348694 348693 - MDR2 6967 0.0027 (8/2986) 0 * Os_TE_56405 Os_TE_56402 Chr8 347056 347057 - TRUNCATOR2_LTR 2904 0.0027 (8/2990) 0 * Os_TE_56401 Os_TE_56401 Chr8 347052 347051 + ORSiTERTOOT00028 8600 0.0027 (8/2969) 0 * Os_TE_56402 Os_TE_56384 Chr8 341451 341452 + COPI1_LTR 4721 0.0007 (2/2987) 0 * Os_TE_56383 Os_TE_56383 Chr8 341447 341446 - SZ-25LTR 330 0.0007 (2/2991) 0 * Os_TE_56384 Os_TE_56382 Chr8 341209 339909 + CACTA-H 1152 0.2618 (782/2987) 1 Intact Os_TE_56380 Os_TE_56380 Chr8 339909 341209 - CACTA-H 1152 0.2610 (779/2985) 1 Intact Os_TE_56382 Os_TE_56344 Chr8 332871 332872 - TRUNCATOR2_LTR 2904 0.0067 (16/2393) 0 * Os_TE_56343 Os_TE_56343 Chr8 332867 332866 + ORSiCMCM00100019 2717 0.0071 (17/2395) 0 * Os_TE_56344 Os_TE_56339 Chr8 331098 331099 - RIREX_LTR 8828 0.2195 (653/2975) 0 * * Os_TE_56336 Chr8 330712 330713 + COPI1_LTR 4721 0.0020 (6/2994) 0 * Os_TE_56335 Os_TE_56335 Chr8 330708 330707 - SZ-25LTR 330 0.0020 (6/2988) 0 * Os_TE_56336 Os_TE_56334 Chr8 330440 330441 - OSLINE1-2 7128 0.0047 (14/2995) 0 * * Os_TE_56320 Chr8 324575 324576 - RIREX_LTR 8828 0.0073 (22/2994) 0 * Os_TE_56319 Os_TE_56319 Chr8 324571 324570 + RIREX_LTR 8828 0.0073 (22/2997) 0 * Os_TE_56320 Os_TE_56308 Chr8 319541 319540 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * * Os_TE_56293 Chr8 312488 312489 - ENSPM5_OS 9581 0.0058 (17/2935) 0 * Os_TE_56292 Os_TE_56292 Chr8 312486 312485 + ENSPM5_OS 9581 0.0048 (14/2934) 0 * Os_TE_56293 Os_TE_56286 Chr8 311385 311386 - TYPEM 227 0.0056 (16/2860) 0 * Os_TE_56285 Os_TE_56285 Chr8 311384 311383 - ORSgTEMT02400179 221 0.0052 (15/2860) 0 * Os_TE_56286 Os_TE_56276 Chr8 310969 310968 - SZ-35LTR 3853 0.0183 (54/2946) 0 * * Os_TE_56274 Chr8 308631 308632 + COPI2_LTR 4733 0.0003 (1/2982) 0 * * Os_TE_56261 Chr8 306484 306485 - ORSiTERT00100062 5674 0.0003 (1/2961) 0 * Os_TE_56260 Os_TE_56260 Chr8 306480 306479 + OSTONOR1_LTR 6440 0.0003 (1/2966) 0 * Os_TE_56261 Os_TE_56234 Chr8 299272 299271 - SZ-35LTR 3853 0.0017 (5/2996) 0 * * Os_TE_56217 Chr8 291841 291842 + Cassandra_OS-LTR 764 0.3115 (890/2857) 0 * Os_TE_56216 Os_TE_56216 Chr8 291837 291836 - Cassandra_OS-LTR 764 0.3227 (903/2798) 0 * Os_TE_56217 Os_TE_56206 Chr8 286909 286908 - SPMLIKE 10989 0.0003 (1/2976) 0 * * Os_TE_56178 Chr8 276957 276956 + MPING 430 0.0003 (1/2991) 0 * * Os_TE_56170 Chr8 267440 267441 + TOS17LTR 138 0.0134 (40/2993) 0 * Os_TE_56169 Os_TE_56169 Chr8 267436 267435 - TOS17LTR 138 0.0138 (41/2976) 0 * Os_TE_56170 Os_TE_56168 Chr8 266634 266635 + COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_56167 Os_TE_56167 Chr8 266630 266629 - COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_56168 Os_TE_56166 Chr8 266486 266487 - INDITTO 263 0.0007 (2/2992) 0 * Os_TE_56165 Os_TE_56165 Chr8 266484 266483 + INDITTO 263 0.0007 (2/2989) 0 * Os_TE_56166 Os_TE_56156 Chr8 264391 264392 + INDITTO 263 0.0124 (37/2980) 0 * * Os_TE_56153 Chr8 264373 264372 - INDITTO 263 0.0024 (7/2956) 0 * * Os_TE_56152 Chr8 264355 264356 + AMYLTP 383 0.0003 (1/2940) 0 * * Os_TE_56122 Chr8 246163 246164 + COPIA2-LTR_OS 6433 0.0003 (1/2903) 0 * * Os_TE_56114 Chr8 241635 241636 + COPI2_LTR 4733 0.0027 (8/2987) 0 * Os_TE_56113 Os_TE_56113 Chr8 241631 241630 - COPI2_LTR 4733 0.0047 (14/2987) 0 * Os_TE_56114 Os_TE_56083 Chr8 229008 229009 - SZ-22_LTR 4403 0.0003 (1/2983) 0 * Os_TE_56082 Os_TE_56082 Chr8 229004 229003 + ORSiTERTOOT00226 792 0.0003 (1/2980) 0 * Os_TE_56083 Os_TE_56068 Chr8 225980 225732 - ORSgTEMT00900402 248 0.7718 (2293/2971) 1 Intact * Os_TE_56062 Chr8 225469 225470 - NDNA1TNA_OS 334 0.2347 (696/2965) 0 * * Os_TE_56056 Chr8 221157 221158 - STOWAWAY1_OS 149 0.0003 (1/2980) 0 * * Os_TE_56022 Chr8 212796 212797 + MPING 430 0.0007 (2/2991) 0 * Os_TE_56021 Os_TE_56021 Chr8 212794 212793 - MPING 430 0.0007 (2/2996) 0 * Os_TE_56022 Os_TE_56018 Chr8 208249 208250 - GYPSY-A_LTR 8951 0.0007 (2/2983) 0 * Os_TE_56017 Os_TE_56017 Chr8 208245 208244 + SZ-40LTR 2465 0.0007 (2/2968) 0 * Os_TE_56018 Os_TE_56014 Chr8 207455 207456 + RIREX_LTR 8828 0.0003 (1/2987) 0 * Os_TE_56013 Os_TE_56013 Chr8 207451 207450 - RIREX_LTR 8828 0.0007 (2/2988) 0 * Os_TE_56014 Os_TE_56002 Chr8 200381 200380 + STOWAWAY51_OS 246 0.0003 (1/2993) 0 * * Os_TE_55995 Chr8 186417 186418 + ORSgTETNOOT01998 254 0.0337 (78/2315) 0 * * Os_TE_55988 Chr8 184350 184351 + COPIA2-LTR_OS 6433 0.0121 (36/2987) 0 * Os_TE_55987 Os_TE_55987 Chr8 184346 184345 - COPIA2-LTR_OS 6433 0.0134 (40/2990) 0 * Os_TE_55988 Os_TE_55976 Chr8 180762 180761 + HELITRON2_OS 15167 0.0003 (1/2947) 0 * * Os_TE_55956 Chr8 169061 169062 - COPIA2-LTR_OS 6433 0.0003 (1/2939) 0 * Os_TE_55955 Os_TE_55955 Chr8 169057 169056 + COPIA2-LTR_OS 6433 0.0003 (1/2941) 0 * Os_TE_55956 Os_TE_55953 Chr8 168396 168395 - COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * * Os_TE_55939 Chr8 163132 163133 + INDITTO 263 0.0161 (48/2989) 0 * Os_TE_55938 Os_TE_55938 Chr8 163130 163129 - INDITTO 263 0.0161 (48/2986) 0 * Os_TE_55939 Os_TE_55931 Chr8 160487 160486 - ORSgTEMT01602413 239 0.0007 (2/2981) 0 * * Os_TE_55916 Chr8 156047 156048 - RETROSAT2LTR 12796 0.0597 (100/1675) 0 * * Os_TE_55906 Chr8 150834 150835 + RIREX_LTR 8828 0.0007 (2/2932) 0 * Os_TE_55905 Os_TE_55905 Chr8 150830 150829 - RIREX_LTR 8828 0.0007 (2/2929) 0 * Os_TE_55906 Os_TE_55896 Chr8 149753 149754 - SZ-35LTR 3853 0.0795 (238/2995) 0 * Os_TE_55895 Os_TE_55895 Chr8 149749 149748 + RETROSAT4_LTR 13504 0.0771 (231/2995) 0 * Os_TE_55896 Os_TE_55882 Chr8 141422 141811 + SINE03_OS 360 0.7972 (1966/2466) 1 Intact * Os_TE_55865 Chr8 136998 136999 + RIREX_LTR 8828 0.0003 (1/2994) 0 * Os_TE_55864 Os_TE_55864 Chr8 136994 136993 - RIREX_LTR 8828 0.0003 (1/2993) 0 * Os_TE_55865 Os_TE_55862 Chr8 135371 135372 + ORSgTEMT00600272 361 0.0003 (1/2970) 0 * Os_TE_55861 Os_TE_55861 Chr8 135366 135365 + ORSgTEMT00600376 329 0.0003 (1/2992) 0 * Os_TE_55862 Os_TE_55848 Chr8 127308 127309 - SZ-35LTR 3853 0.0020 (6/2991) 0 * * Os_TE_55846 Chr8 125791 125792 + COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_55845 Os_TE_55845 Chr8 125787 125786 - COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_55846 Os_TE_55836 Chr8 122509 122508 + AMYLTP 383 0.0192 (57/2974) 0 * * Os_TE_55833 Chr8 121853 121854 - SZ-67LTR 1540 0.0332 (91/2737) 0 * * Os_TE_55808 Chr8 105149 105148 + DS-RICE3N 525 0.0867 (238/2745) 0 * * Os_TE_55803 Chr8 103660 103661 - ORSgTEMT01602467 227 0.0003 (1/2882) 0 * * Os_TE_55776 Chr8 94524 94525 + ORSgTEMT01700632 122 0.0003 (1/2904) 0 * * Os_TE_55762 Chr8 84943 84724 - ORSgTEMT02400179 221 0.2994 (880/2939) 1 Intact Os_TE_55760 Os_TE_55760 Chr8 84724 84942 - TYPEM 227 0.3120 (930/2981) 1 Intact Os_TE_55762 Os_TE_55759 Chr8 84572 84573 - TEMPINDAS 4259 0.2512 (752/2994) 0 * * Os_TE_55718 Chr8 68780 68781 - CASTAWAY 364 0.0003 (1/2958) 0 * Os_TE_55717 Os_TE_55717 Chr8 68777 68776 - ORSgTEMT00600304 361 0.0003 (1/2953) 0 * Os_TE_55718 Os_TE_55702 Chr8 59992 59993 + SC-8_LTR 4951 0.0013 (4/2996) 0 * Os_TE_55701 Os_TE_55701 Chr8 59988 59987 - SC-8_LTR 4951 0.0013 (4/2996) 0 * Os_TE_55702 Os_TE_55695 Chr8 53310 53311 + MUDRN5_OS 374 0.0004 (1/2356) 0 * * Os_TE_55671 Chr8 43379 43380 + ORSiTERTOOT00296 5553 0.0003 (1/2951) 0 * Os_TE_55670 Os_TE_55670 Chr8 43375 43374 - SC-3_LTR 5748 0.0003 (1/2953) 0 * Os_TE_55671 Os_TE_55667 Chr8 41323 41324 - SC-3_LTR 5748 0.0003 (1/2996) 0 * Os_TE_55666 Os_TE_55666 Chr8 41319 41318 + ORSiTERTOOT00296 5553 0.0003 (1/2997) 0 * Os_TE_55667 Os_TE_191003 Chr7 29684076 29684077 + ORSgTEMT01601591 242 0.0005 (1/2120) 0 * * Os_TE_190998 Chr7 29675202 29674621 - TNR12 528 0.8313 (1533/1844) 1 Intact * Os_TE_190959 Chr7 29655925 29655926 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_190958 Os_TE_190958 Chr7 29655921 29655920 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_190959 Os_TE_190957 Chr7 29655425 29655426 + RIREX_LTR 8828 0.0871 (260/2984) 0 * Os_TE_190956 Os_TE_190956 Chr7 29655421 29655420 - RIREX_LTR 8828 0.0878 (262/2985) 0 * Os_TE_190957 Os_TE_190955 Chr7 29655024 29655025 - COPIA2-LTR_OS 6433 0.0003 (1/2981) 0 * Os_TE_190954 Os_TE_190954 Chr7 29655020 29655019 + COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * Os_TE_190955 Os_TE_190913 Chr7 29638559 29638560 + STOWAWAY1_OS 149 0.7675 (2298/2994) 0 * * Os_TE_190902 Chr7 29632883 29632884 - COPI2_LTR 4733 0.0003 (1/2991) 0 * * Os_TE_190899 Chr7 29630081 29630082 + ORSgTETNOOT00221 261 0.0057 (17/2993) 0 * * Os_TE_190868 Chr7 29614302 29614301 + RIREX_LTR 8828 0.0003 (1/2937) 0 * * Os_TE_190803 Chr7 29586652 29586653 + ORSgTEMT01601591 242 0.0003 (1/2990) 0 * * Os_TE_190757 Chr7 29571870 29571871 + MUJITOS1 3987 0.0017 (5/2983) 0 * * Os_TE_190755 Chr7 29571701 29571702 + RIREX_LTR 8828 0.0057 (17/2992) 0 * Os_TE_190754 Os_TE_190754 Chr7 29571697 29571696 - RIREX_LTR 8828 0.0057 (17/2983) 0 * Os_TE_190755 Os_TE_190724 Chr7 29563257 29563258 - ORSgTETN00200001 10994 0.0058 (17/2919) 0 * Os_TE_190723 Os_TE_190723 Chr7 29563255 29563254 + SPMLIKE 10989 0.0055 (16/2920) 0 * Os_TE_190724 Os_TE_190692 Chr7 29550604 29550603 - RETRO1_LTR 8314 0.0003 (1/2986) 0 * * Os_TE_190691 Chr7 29549865 29549866 + STOWAWAY43_OS 233 0.8526 (2481/2910) 0 * * Os_TE_190683 Chr7 29548953 29548952 - ORSgTERT00201216 11284 0.0876 (259/2957) 0 * * Os_TE_190674 Chr7 29532182 29532183 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_190673 Os_TE_190673 Chr7 29532178 29532177 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_190674 Os_TE_190667 Chr7 29520748 29520749 + RIREX_LTR 8828 0.0003 (1/2998) 0 * Os_TE_190666 Os_TE_190666 Chr7 29520744 29520743 - RIREX_LTR 8828 0.0003 (1/2999) 0 * Os_TE_190667 Os_TE_190665 Chr7 29520486 29520487 + RMU2A1C 1169 0.5007 (1487/2970) 0 * Os_TE_190664 Os_TE_190664 Chr7 29520478 29520477 + RMU2A1C 1169 0.5075 (1520/2995) 0 * Os_TE_190665 Os_TE_190644 Chr7 29513750 29513751 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_190643 Os_TE_190643 Chr7 29513746 29513745 - COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_190644 Os_TE_190632 Chr7 29504685 29504686 - STOWAWAY51_OS 246 0.0003 (1/2993) 0 * * Os_TE_190626 Chr7 29494178 29494179 - TELIA 141 0.0923 (271/2937) 0 * * Os_TE_190617 Chr7 29493570 29493569 + ORSgTETNOOT00543 259 0.0010 (3/2936) 0 * * Os_TE_190612 Chr7 29491595 29491594 - COPIA2-LTR_OS 6433 0.0007 (2/2987) 0 * * Os_TE_190610 Chr7 29487400 29487401 + OSR3_LTR 5201 0.0909 (270/2970) 0 * Os_TE_190609 Os_TE_190609 Chr7 29487396 29487395 - OSR3_LTR 5201 0.0912 (271/2970) 0 * Os_TE_190610 Os_TE_190602 Chr7 29484349 29484348 - TYPEM 227 0.0292 (85/2909) 0 * Os_TE_190601 Os_TE_190601 Chr7 29484348 29484349 - ORSgTEMT02400034 225 0.0289 (85/2944) 0 * Os_TE_190602 Os_TE_190590 Chr7 29472539 29472540 + SC-8_LTR 4951 0.0007 (2/2913) 0 * * Os_TE_190579 Chr7 29468829 29468828 + NDNA1TNA_OS 334 0.6426 (1922/2991) 0 * * Os_TE_190573 Chr7 29468365 29468005 + ORSgTEMT00600272 361 0.1489 (445/2988) 1 Intact Os_TE_190572 Os_TE_190572 Chr7 29468002 29468365 - ORSgTEMT00600524 364 0.1493 (447/2993) 1 Intact Os_TE_190573 Os_TE_190516 Chr7 29438219 29438220 - ORSgTETNOOT02166 197 0.0003 (1/2983) 0 * * Os_TE_190506 Chr7 29434416 29434417 - SC-8_LTR 4951 0.0013 (4/2992) 0 * * Os_TE_190504 Chr7 29432989 29432990 - ORSiTERTOOT00402 2660 0.0003 (1/2998) 0 * Os_TE_190503 Os_TE_190503 Chr7 29432985 29432984 + ORSiTERTOOT00402 2660 0.0003 (1/2999) 0 * Os_TE_190504 Os_TE_190473 Chr7 29422213 29422214 + ORSgTETNOOT01668 244 0.0789 (235/2979) 0 * * Os_TE_190470 Chr7 29420969 29420970 + COPIA2-LTR_OS 6433 0.0003 (1/2964) 0 * Os_TE_190469 Os_TE_190469 Chr7 29420965 29420964 - COPIA2-LTR_OS 6433 0.0003 (1/2968) 0 * Os_TE_190470 Os_TE_190463 Chr7 29417364 29417363 + ORSgTETNOOT00032 218 0.0003 (1/2994) 0 * * Os_TE_190438 Chr7 29414113 29414114 + ORSgTEMT00600124 361 0.7048 (2101/2981) 0 * * Os_TE_190421 Chr7 29407106 29407105 - NDNA1TNA_OS 334 0.0003 (1/2988) 0 * Os_TE_190420 Os_TE_190420 Chr7 29407103 29407104 + NDNA1TNA_OS 334 0.0003 (1/2987) 0 * Os_TE_190421 Os_TE_190417 Chr7 29406557 29406556 + RETRO2A_LTR 12895 0.0299 (88/2942) 0 * * Os_TE_190389 Chr7 29387747 29387748 - ORSgTERT00201216 11284 0.5964 (1760/2951) 0 * Os_TE_190388 Os_TE_190388 Chr7 29387743 29387742 - RIRE2_LTR 11306 0.6041 (1802/2983) 0 * Os_TE_190389 Os_TE_190379 Chr7 29381740 29381741 - SZ-22_LTR 4403 0.0013 (4/2978) 0 * Os_TE_190378 Os_TE_190378 Chr7 29381736 29381735 + ORSiTERTOOT00034 791 0.0013 (4/2978) 0 * Os_TE_190379 Os_TE_190376 Chr7 29379085 29379086 + ORSiTERTOOT00333 4719 0.0314 (94/2997) 0 * Os_TE_190375 Os_TE_190375 Chr7 29379082 29379081 - ORSiTERTOOT00333 4719 0.0307 (92/2994) 0 * Os_TE_190376 Os_TE_190374 Chr7 29376034 29376035 - Cassandra_OS-LTR 764 0.6454 (1920/2975) 0 * Os_TE_190373 Os_TE_190373 Chr7 29376030 29376029 + SZ-62LTR 3649 0.6444 (1914/2970) 0 * Os_TE_190374 Os_TE_190350 Chr7 29365255 29365254 + RIRE5-LTR_OS 6427 0.6282 (1872/2980) 0 * * Os_TE_190333 Chr7 29358871 29358603 + ORSgTEMT06100010 269 0.3427 (1003/2927) 1 Intact * Os_TE_190322 Chr7 29357045 29357046 - ORSiTETNOOT00134 607 0.0003 (1/2993) 0 * * Os_TE_190318 Chr7 29356099 29356098 + TRUNCATOR 2918 0.0003 (1/2992) 0 * * Os_TE_190315 Chr7 29351161 29351162 - MuDR2_OS 6770 0.0003 (1/2993) 0 * Os_TE_190314 Os_TE_190314 Chr7 29351152 29351151 - MuDR2_OS 6770 0.0003 (1/2993) 0 * Os_TE_190315 Os_TE_190305 Chr7 29346155 29346156 + ORSiTERTOOT00381 4988 0.0003 (1/2994) 0 * Os_TE_190304 Os_TE_190304 Chr7 29346151 29346150 - SC-8_LTR 4951 0.0003 (1/2995) 0 * Os_TE_190305 Os_TE_190298 Chr7 29338132 29338133 - INDITTO 263 0.0003 (1/2994) 0 * Os_TE_190297 Os_TE_190297 Chr7 29338130 29338129 + INDITTO 263 0.0003 (1/2996) 0 * Os_TE_190298 Os_TE_190294 Chr7 29337281 29337282 - CASTAWAY 364 0.0003 (1/2992) 0 * Os_TE_190293 Os_TE_190293 Chr7 29337278 29337277 - ORSgTEMT00600304 361 0.0003 (1/2992) 0 * Os_TE_190294 Os_TE_190288 Chr7 29334116 29334117 + TYPEU4 402 0.5912 (1770/2994) 0 * * Os_TE_190277 Chr7 29330774 29330775 + MuDR4_OS 7610 0.0299 (86/2879) 0 * Os_TE_190276 Os_TE_190276 Chr7 29330767 29330766 + MuDR4_OS 7610 0.0305 (88/2883) 0 * Os_TE_190277 Os_TE_190269 Chr7 29328392 29328391 - ORSiTETNOOT00130 2164 0.0020 (2/997) 0 * * Os_TE_190163 Chr7 29295218 29295219 - SC-8_LTR 4951 0.0007 (2/2944) 0 * Os_TE_190162 Os_TE_190162 Chr7 29295214 29295213 + SC-8_LTR 4951 0.0007 (2/2943) 0 * Os_TE_190163 Os_TE_190157 Chr7 29289077 29289076 - SZ-17_LTR 3387 0.0010 (1/1008) 0 * * Os_TE_190146 Chr7 29283008 29283007 + ORSgTETNOOT00032 218 0.0022 (6/2761) 0 * * Os_TE_190135 Chr7 29274065 29274066 + SC-8_LTR 4951 0.0007 (2/2994) 0 * Os_TE_190134 Os_TE_190134 Chr7 29274061 29274060 - SC-8_LTR 4951 0.0007 (2/2991) 0 * Os_TE_190135 Os_TE_190117 Chr7 29262939 29262940 + COPIA2-LTR_OS 6433 0.0324 (97/2994) 0 * Os_TE_190116 Os_TE_190116 Chr7 29262935 29262934 - COPIA2-LTR_OS 6433 0.0341 (102/2995) 0 * Os_TE_190117 Os_TE_190097 Chr7 29258920 29258919 - STOWAWAY44_OS 240 0.0003 (1/2998) 0 * Os_TE_190096 Os_TE_190096 Chr7 29258917 29258918 + STOWAWAY44_OS 240 0.0003 (1/2995) 0 * Os_TE_190097 Os_TE_190093 Chr7 29255447 29255448 - SC-3_LTR 5748 0.0010 (3/2986) 0 * Os_TE_190092 Os_TE_190092 Chr7 29255443 29255442 + ORSiTERTOOT00296 5553 0.0010 (3/2984) 0 * Os_TE_190093 Os_TE_190068 Chr7 29244754 29244755 - RIRE2_LTR 11306 0.0913 (273/2990) 0 * Os_TE_190067 Os_TE_190067 Chr7 29244750 29244749 + RIRE2_LTR 11306 0.0902 (270/2994) 0 * Os_TE_190068 Os_TE_190058 Chr7 29240917 29240916 + COPI2_LTR 4733 0.0003 (1/2997) 0 * * Os_TE_190046 Chr7 29234875 29234876 - ORSgTERT00201216 11284 0.0037 (11/2999) 0 * Os_TE_190045 Os_TE_190045 Chr7 29234871 29234870 - RIRE2_LTR 11306 0.0037 (11/2998) 0 * Os_TE_190046 Os_TE_190042 Chr7 29233659 29233660 - OSTE33 1012 0.0013 (4/2994) 0 * Os_TE_190041 Os_TE_190041 Chr7 29233650 29233649 - OSTE33 1012 0.0017 (5/2995) 0 * Os_TE_190042 Os_TE_190022 Chr7 29220370 29220371 - RIREX_LTR 8828 0.0003 (1/2990) 0 * Os_TE_190021 Os_TE_190021 Chr7 29220366 29220365 + RIREX_LTR 8828 0.0003 (1/2988) 0 * Os_TE_190022 Os_TE_189998 Chr7 29209114 29209115 - OSTONOR1_LTR 6440 0.0020 (6/2998) 0 * Os_TE_189997 Os_TE_189997 Chr7 29209110 29209109 + OSTONOR1_LTR 6440 0.0020 (6/2996) 0 * Os_TE_189998 Os_TE_189981 Chr7 29196215 29196216 - COPI2_LTR 4733 0.0003 (1/2991) 0 * Os_TE_189980 Os_TE_189980 Chr7 29196210 29196209 + COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_189981 Os_TE_189979 Chr7 29195695 29195696 - SC-8_LTR 4951 0.0003 (1/2997) 0 * Os_TE_189978 Os_TE_189978 Chr7 29195691 29195690 + ORSiTERTOOT00381 4988 0.0003 (1/2997) 0 * Os_TE_189979 Os_TE_189954 Chr7 29173482 29173483 - AMYLTP 383 0.0183 (54/2945) 0 * * Os_TE_189939 Chr7 29168545 29168546 - ORSgTEMT02000041 194 0.0020 (6/2995) 0 * * Os_TE_189915 Chr7 29152228 29152229 + ENSPM4_OS 11610 0.0037 (11/2997) 0 * * Os_TE_189897 Chr7 29144843 29144844 + OSTE33 1012 0.0020 (6/2959) 0 * Os_TE_189896 Os_TE_189896 Chr7 29144842 29144841 + OSTE33 1012 0.0114 (34/2985) 0 * Os_TE_189897 Os_TE_189873 Chr7 29142019 29142018 + NDNA2TNA_OS 346 0.0107 (32/2989) 0 * * Os_TE_189870 Chr7 29141696 29141697 - NDNA1TNA_OS 334 0.0020 (6/2972) 0 * * Os_TE_189861 Chr7 29141103 29141104 - COPIA2-LTR_OS 6433 0.0003 (1/2962) 0 * Os_TE_189860 Os_TE_189860 Chr7 29141099 29141098 + COPIA2-LTR_OS 6433 0.0003 (1/2958) 0 * Os_TE_189861 Os_TE_189829 Chr7 29136198 29136199 + RIREX_LTR 8828 0.0003 (1/2970) 0 * * Os_TE_189812 Chr7 29134046 29134047 + COPI2_LTR 4733 0.0003 (1/2983) 0 * Os_TE_189811 Os_TE_189811 Chr7 29134042 29134041 - COPI2_LTR 4733 0.0003 (1/2985) 0 * Os_TE_189812 Os_TE_189809 Chr7 29132828 29133083 + ORSgTETNOOT01834 251 0.1893 (566/2990) 1 Intact * Os_TE_189807 Chr7 29130806 29130807 - COPI2_LTR 4733 0.0003 (1/2992) 0 * * Os_TE_189801 Chr7 29127999 29127998 - TRUNCATOR 2918 0.0023 (7/2980) 0 * * Os_TE_189792 Chr7 29125785 29125786 + MuDR2_OS 6770 0.0078 (23/2945) 0 * Os_TE_189791 Os_TE_189791 Chr7 29125777 29125776 - MuDR2_OS 6770 0.0082 (24/2927) 0 * Os_TE_189792 Os_TE_189779 Chr7 29120277 29120278 - RIREX_LTR 8828 0.0037 (11/2996) 0 * Os_TE_189778 Os_TE_189778 Chr7 29120273 29120272 + RIREX_LTR 8828 0.0037 (11/2997) 0 * Os_TE_189779 Os_TE_189777 Chr7 29119843 29119842 + OLO24 345 0.0003 (1/2998) 0 * * Os_TE_189771 Chr7 29114818 29114819 - COPIA2-LTR_OS 6433 0.0007 (2/2989) 0 * Os_TE_189770 Os_TE_189770 Chr7 29114814 29114813 + COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_189771 Os_TE_189768 Chr7 29114282 29114283 + COPIA2-LTR_OS 6433 0.0080 (24/2992) 0 * Os_TE_189767 Os_TE_189767 Chr7 29114278 29114277 - COPIA2-LTR_OS 6433 0.0084 (25/2994) 0 * Os_TE_189768 Os_TE_189764 Chr7 29109664 29109665 - MuDR3_OS 8604 0.8047 (2390/2970) 0 * Os_TE_189763 Os_TE_189763 Chr7 29109656 29109655 - MuDR3_OS 8604 0.8026 (2382/2968) 0 * Os_TE_189764 Os_TE_189760 Chr7 29103825 29103826 + STOWAWAY15-2_OS 145 0.0007 (2/2988) 0 * * Os_TE_189755 Chr7 29101901 29101902 + SC-8_LTR 4951 0.0003 (1/2976) 0 * Os_TE_189754 Os_TE_189754 Chr7 29101897 29101896 - SC-8_LTR 4951 0.0003 (1/2975) 0 * Os_TE_189755 Os_TE_189743 Chr7 29092509 29092510 - RIREX_LTR 8828 0.0007 (2/2971) 0 * Os_TE_189742 Os_TE_189742 Chr7 29092505 29092504 + RIREX_LTR 8828 0.0007 (2/2994) 0 * Os_TE_189743 Os_TE_189741 Chr7 29092145 29092144 - COPI2_LTR 4733 0.0003 (1/2987) 0 * * Os_TE_189723 Chr7 29083991 29083992 + SPMLIKE 10989 0.0903 (265/2935) 0 * Os_TE_189722 Os_TE_189722 Chr7 29083989 29083988 - ORSgTETN00200001 10994 0.0603 (170/2821) 0 * Os_TE_189723 Os_TE_189720 Chr7 29083959 29083958 + ORSgTEMT01600766 228 0.0007 (2/2845) 0 * * Os_TE_189713 Chr7 29077415 29077414 + STOWAWAY51_OS 246 0.0033 (10/2996) 0 * Os_TE_189712 Os_TE_189712 Chr7 29077409 29077410 + ORSgTEMT01601591 242 0.0033 (10/2993) 0 * Os_TE_189713 Os_TE_189711 Chr7 29077123 29077124 + COPI2_LTR 4733 0.0003 (1/2986) 0 * Os_TE_189710 Os_TE_189710 Chr7 29077119 29077118 - COPI2_LTR 4733 0.0003 (1/2987) 0 * Os_TE_189711 Os_TE_189709 Chr7 29076757 29076758 + RIREX_LTR 8828 0.0013 (4/2991) 0 * Os_TE_189708 Os_TE_189708 Chr7 29076753 29076752 - RIREX_LTR 8828 0.0013 (4/2992) 0 * Os_TE_189709 Os_TE_189705 Chr7 29074693 29074692 + MPING 430 0.0013 (4/3000) 0 * * Os_TE_189703 Chr7 29072170 29072171 + RETROSAT4_LTR 13504 0.0013 (4/2987) 0 * Os_TE_189702 Os_TE_189702 Chr7 29072166 29072165 - SZ-35LTR 3853 0.0017 (5/2989) 0 * Os_TE_189703 Os_TE_189695 Chr7 29068549 29068550 - DS-RICE2N 613 0.0953 (280/2937) 0 * * Os_TE_189658 Chr7 29062671 29062672 - ORSgTETN00200001 10994 0.0020 (6/2966) 0 * Os_TE_189657 Os_TE_189657 Chr7 29062669 29062668 + SPMLIKE 10989 0.0020 (6/2945) 0 * Os_TE_189658 Os_TE_189656 Chr7 29062261 29062262 + MUDRN5_OS 374 0.0003 (1/2963) 0 * * Os_TE_189652 Chr7 29061229 29061230 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_189651 Os_TE_189651 Chr7 29061225 29061224 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_189652 Os_TE_189631 Chr7 29056734 29056733 - ORSgTEMT01601696 238 0.0007 (2/2965) 0 * * Os_TE_189628 Chr7 29055049 29055050 + HELITRON8_OS 8831 0.0003 (1/2974) 0 * * Os_TE_189627 Chr7 29054953 29054952 + STOWAWAY51_OS 246 0.0004 (1/2730) 0 * Os_TE_189626 Os_TE_189626 Chr7 29054947 29054948 + ORSgTEMT01601591 242 0.0003 (1/2980) 0 * Os_TE_189627 Os_TE_189624 Chr7 29053876 29053877 + ORSgTETNOOT01998 254 0.0003 (1/2993) 0 * * Os_TE_189616 Chr7 29051198 29051199 - CACTA-H 1152 0.0060 (18/2993) 0 * Os_TE_189615 Os_TE_189615 Chr7 29051196 29051195 + CACTA-H 1152 0.0067 (20/2996) 0 * Os_TE_189616 Os_TE_189600 Chr7 29048407 29048408 + NDNA1TNA_OS 334 0.0070 (21/2988) 0 * * Os_TE_189599 Chr7 29048007 29048008 - NDNA1TNA_OS 334 0.6736 (2006/2978) 0 * Os_TE_189598 Os_TE_189598 Chr7 29048006 29048005 + NDNA1TNA_OS 334 0.6745 (2018/2992) 0 * Os_TE_189599 Os_TE_189587 Chr7 29045952 29045951 - RIREX_LTR 8828 0.0027 (8/2957) 0 * * Os_TE_189566 Chr7 29043764 29043765 - SZ-35LTR 3853 0.0242 (72/2978) 0 * Os_TE_189565 Os_TE_189565 Chr7 29043760 29043759 + RETROSAT4_LTR 13504 0.0235 (70/2976) 0 * Os_TE_189566 Os_TE_189564 Chr7 29043714 29043715 - RIREX_LTR 8828 0.0147 (44/2984) 0 * Os_TE_189563 Os_TE_189563 Chr7 29043710 29043709 + RIREX_LTR 8828 0.0144 (43/2982) 0 * Os_TE_189564 Os_TE_189561 Chr7 29042558 29042559 - ORSgTEMT00600085 364 0.0003 (1/2993) 0 * Os_TE_189560 Os_TE_189560 Chr7 29042556 29042555 + ORSgTEMT00600192 355 0.0003 (1/2995) 0 * Os_TE_189561 Os_TE_189511 Chr7 29019682 29015977 + RETROSAT4_LTR 13504 0.1634 (460/2816) 1 Solo_LTR Os_TE_189506 Os_TE_189506 Chr7 29015977 29019682 - RETROSAT4_LTR 13504 0.1917 (571/2978) 1 Solo_LTR Os_TE_189511 Os_TE_189505 Chr7 29015321 29015322 - INDITTO 263 0.0221 (66/2992) 0 * Os_TE_189504 Os_TE_189504 Chr7 29015319 29015318 + INDITTO 263 0.0217 (65/2992) 0 * Os_TE_189505 Os_TE_189502 Chr7 29015170 29015169 + ORSgTEMT00901844 250 0.0147 (44/2992) 0 * Os_TE_189501 Os_TE_189501 Chr7 29015166 29015167 - ORSgTEMT00900099 250 0.0147 (44/2992) 0 * Os_TE_189502 Os_TE_189499 Chr7 29014816 29014817 + HARB-1_OS 5166 0.0003 (1/2951) 0 * * Os_TE_189497 Chr7 29014630 29014629 - ORSgTETNOOT00053 263 0.7938 (2371/2987) 0 * Os_TE_189496 Os_TE_189496 Chr7 29014625 29014626 - ORSgTETNOOT00303 256 0.7934 (2370/2987) 0 * Os_TE_189497 Os_TE_189491 Chr7 29013719 29013720 - ORSgTETNOOT01930 140 0.0148 (44/2973) 0 * * Os_TE_189485 Chr7 29008850 29008851 - RIREX_LTR 8828 0.0040 (12/2996) 0 * Os_TE_189484 Os_TE_189484 Chr7 29008846 29008845 + RIREX_LTR 8828 0.0037 (11/2998) 0 * Os_TE_189485 Os_TE_189471 Chr7 29003010 29003011 - MPING 430 0.0003 (1/2996) 0 * Os_TE_189470 Os_TE_189470 Chr7 29003008 29003007 + MPING 430 0.0003 (1/2996) 0 * Os_TE_189471 Os_TE_189432 Chr7 28989765 28989766 - SZ-48LTR 3632 0.0154 (46/2996) 0 * Os_TE_189431 Os_TE_189431 Chr7 28989761 28989760 + SZ-48LTR 3632 0.0147 (44/2995) 0 * Os_TE_189432 Os_TE_189428 Chr7 28988696 28988697 - HARB-1_OS 5166 0.0003 (1/2993) 0 * Os_TE_189427 Os_TE_189427 Chr7 28988694 28988693 + HARB-1_OS 5166 0.0003 (1/2984) 0 * Os_TE_189428 Os_TE_189408 Chr7 28983673 28979813 - RETROSAT4_LTR 13504 0.2033 (595/2926) 1 Solo_LTR * Os_TE_189393 Chr7 28977104 28977103 - MuDR4_OS 7610 0.0111 (33/2983) 0 * * Os_TE_189390 Chr7 28975890 28975891 + COPIA2-LTR_OS 6433 0.0003 (1/2940) 0 * Os_TE_189389 Os_TE_189389 Chr7 28975886 28975885 - COPIA2-LTR_OS 6433 0.0003 (1/2935) 0 * Os_TE_189390 Os_TE_189383 Chr7 28973185 28972104 + RETRO2_LTR 12874 0.3149 (941/2988) 1 Solo_LTR Os_TE_189382 Os_TE_189382 Chr7 28972104 28973188 - RETRO2_LTR 12874 0.3153 (945/2997) 1 Solo_LTR Os_TE_189383 Os_TE_189371 Chr7 28969434 28969433 + RETROSAT4_LTR 13504 0.0053 (16/2998) 0 * * Os_TE_189357 Chr7 28961176 28961175 + MuDR3_OS 8604 0.0003 (1/2998) 0 * * Os_TE_189356 Chr7 28961062 28961061 + STOWAWAY51_OS 246 0.0003 (1/2996) 0 * Os_TE_189355 Os_TE_189355 Chr7 28961056 28961057 + ORSgTEMT01601591 242 0.0003 (1/2996) 0 * Os_TE_189356 Os_TE_189353 Chr7 28960952 28960951 - DS-RICE2N 613 0.0054 (16/2984) 0 * * Os_TE_189256 Chr7 28936888 28936889 + DS-RICE4N 715 0.0057 (17/2992) 0 * Os_TE_189255 Os_TE_189255 Chr7 28936881 28936880 - DS-RICE2N 613 0.0057 (17/2992) 0 * Os_TE_189256 Os_TE_189253 Chr7 28935442 28935443 + RETRO1_LTR 8314 0.0003 (1/2998) 0 * Os_TE_189252 Os_TE_189252 Chr7 28935438 28935437 - RETRO1_LTR 8314 0.0003 (1/2999) 0 * Os_TE_189253 Os_TE_189251 Chr7 28934891 28934890 - STOWAWAY44_OS 240 0.0003 (1/2993) 0 * * Os_TE_189248 Chr7 28934573 28934572 + ORSgTETNOOT00908 242 0.0003 (1/2989) 0 * * Os_TE_189242 Chr7 28932824 28932823 - STOWAWAY51_OS 246 0.0003 (1/2993) 0 * * Os_TE_189218 Chr7 28919712 28919713 - COPIA2-LTR_OS 6433 0.0027 (8/2996) 0 * Os_TE_189217 Os_TE_189217 Chr7 28919708 28919707 + COPIA2-LTR_OS 6433 0.0027 (8/2995) 0 * Os_TE_189218 Os_TE_189176 Chr7 28891986 28891987 + RIRE2_LTR 11306 0.3681 (1097/2980) 0 * Os_TE_189175 Os_TE_189175 Chr7 28891983 28891982 - RIRE2_LTR 11306 0.3662 (1091/2979) 0 * Os_TE_189176 Os_TE_189169 Chr7 28890048 28890047 - ORSiTERTOOT00367 5639 0.0003 (1/2995) 0 * * Os_TE_189168 Chr7 28888553 28888554 + NDNA1TNA_OS 334 0.2357 (702/2978) 0 * Os_TE_189167 Os_TE_189167 Chr7 28888551 28888550 - NDNA1TNA_OS 334 0.2349 (694/2955) 0 * Os_TE_189168 Os_TE_189158 Chr7 28887368 28887369 + SZ-40LTR 2465 0.0003 (1/2893) 0 * Os_TE_189157 Os_TE_189157 Chr7 28887364 28887363 - GYPSY-A_LTR 8951 0.0003 (1/2873) -1 * Os_TE_189158 Os_TE_189148 Chr7 28886350 28886349 + ORSgTEMT00300069 394 0.0019 (5/2587) 0 * * Os_TE_189145 Chr7 28884400 28884401 + ORSgTEMT00500512 153 0.0017 (5/2992) 0 * * Os_TE_189125 Chr7 28877696 28877697 - COWARD-3 221 0.0014 (4/2949) 0 * * Os_TE_189122 Chr7 28876311 28876310 - CACTA-G1 797 0.0017 (5/2997) 0 * * Os_TE_189121 Chr7 28875702 28875703 + CACTA-G1 797 0.0017 (5/2986) 0 * * Os_TE_189117 Chr7 28873963 28873962 + ORSgTEMT00300063 413 0.4394 (1291/2938) 0 * * Os_TE_189116 Chr7 28873736 28873737 - COPIA2-LTR_OS 6433 0.0017 (5/2959) 0 * Os_TE_189115 Os_TE_189115 Chr7 28873732 28873731 + COPIA2-LTR_OS 6433 0.0014 (4/2921) 0 * Os_TE_189116 Os_TE_189108 Chr7 28873130 28873131 - COPI2_LTR 4733 0.0003 (1/2993) 0 * Os_TE_189107 Os_TE_189107 Chr7 28873126 28873125 + COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_189108 Os_TE_189097 Chr7 28870994 28870993 + RETRO2_LTR 12874 0.0014 (4/2854) 0 * * Os_TE_189089 Chr7 28870283 28870284 - COPIA2-LTR_OS 6433 0.0003 (1/2961) 0 * * Os_TE_189075 Chr7 28863374 28863375 + MERMITEH 1307 0.0007 (2/2985) 0 * * Os_TE_189050 Chr7 28849220 28849221 + COPI2_LTR 4733 0.0003 (1/2991) 0 * * Os_TE_189041 Chr7 28847554 28847553 - CASLET 354 0.0970 (289/2978) 0 * * Os_TE_189024 Chr7 28835289 28835290 + SC-8_LTR 4951 0.0003 (1/2986) 0 * Os_TE_189023 Os_TE_189023 Chr7 28835285 28835284 - SC-8_LTR 4951 0.0003 (1/2983) 0 * Os_TE_189024 Os_TE_189012 Chr7 28833289 28833290 - SC-3_LTR 5748 0.0003 (1/2988) 0 * Os_TE_189011 Os_TE_189011 Chr7 28833285 28833284 + ORSiTERTOOT00296 5553 0.0003 (1/2987) 0 * Os_TE_189012 Os_TE_189010 Chr7 28832149 28832148 - ORSgTEMT00700002 381 0.0003 (1/2989) 0 * * Os_TE_188985 Chr7 28818775 28818774 - SC-3_LTR 5748 0.0003 (1/2994) 0 * * Os_TE_188954 Chr7 28807146 28807145 + ORSgTEMT01602181 239 0.0006 (1/1693) 0 * * Os_TE_188942 Chr7 28805816 28805596 - ORSgTEMT02400179 221 0.4383 (1307/2982) 1 Intact * Os_TE_188937 Chr7 28804008 28804009 + TWIFBIG 3567 0.1078 (317/2941) 0 * Os_TE_188936 Os_TE_188936 Chr7 28804001 28804000 - ORSiTETNOOT00216 3569 0.0984 (286/2907) 0 * Os_TE_188937 Os_TE_188931 Chr7 28802527 28795098 + RIREX_LTR 8828 0.4435 (1316/2967) 1 Intact Os_TE_188927 Os_TE_188927 Chr7 28795098 28802526 - RIREX_LTR 8828 0.4415 (1321/2992) 1 Intact Os_TE_188931 Os_TE_188920 Chr7 28789079 28789080 - AMYLTP 383 0.4759 (1411/2965) 0 * Os_TE_188919 Os_TE_188919 Chr7 28789071 28789070 + AMYLTP 383 0.4749 (1408/2965) 0 * Os_TE_188920 Os_TE_188897 Chr7 28778255 28778256 - CASTAWAY 364 0.0003 (1/2979) 0 * Os_TE_188896 Os_TE_188896 Chr7 28778252 28778251 - ORSgTEMT00600304 361 0.0003 (1/2973) 0 * Os_TE_188897 Os_TE_188887 Chr7 28772599 28772598 - SC-3_LTR 5748 0.0003 (1/2983) 0 * * Os_TE_188883 Chr7 28771315 28771316 + SC-8_LTR 4951 0.0030 (9/2997) 0 * * Os_TE_188868 Chr7 28763867 28763866 + ORSgTEMT00700017 386 0.0007 (2/2987) 0 * * Os_TE_188851 Chr7 28755759 28755760 - COPIA2-LTR_OS 6433 0.0017 (5/2997) 0 * Os_TE_188850 Os_TE_188850 Chr7 28755755 28755754 + COPIA2-LTR_OS 6433 0.0017 (5/2996) 0 * Os_TE_188851 Os_TE_188847 Chr7 28754097 28754098 + ORSgTEMT05000092 279 0.0013 (4/2991) 0 * Os_TE_188846 Os_TE_188846 Chr7 28754095 28754094 - SUSU 279 0.0017 (5/2991) 0 * Os_TE_188847 Os_TE_188826 Chr7 28748583 28748584 - RIREX_LTR 8828 0.0003 (1/2998) 0 * Os_TE_188825 Os_TE_188825 Chr7 28748579 28748578 + RIREX_LTR 8828 0.0003 (1/2998) 0 * Os_TE_188826 Os_TE_188822 Chr7 28747752 28747751 + RETRO2A_LTR 12895 0.0027 (7/2599) 0 * * Os_TE_188793 Chr7 28735715 28735714 - STOWAWAY51_OS 246 0.0003 (1/2995) 0 * * Os_TE_188791 Chr7 28735479 28735478 + ORSgTEMT01601591 242 0.0003 (1/2993) 0 * Os_TE_188790 Os_TE_188790 Chr7 28735476 28735477 + ORSgTEMT01601591 242 0.0003 (1/2994) 0 * Os_TE_188791 Os_TE_188771 Chr7 28729895 28729896 - MuDR4_OS 7610 0.0027 (8/2976) 0 * Os_TE_188770 Os_TE_188770 Chr7 28729887 28729886 - MuDR4_OS 7610 0.0027 (8/2974) 0 * Os_TE_188771 Os_TE_188765 Chr7 28722124 28722125 + MPING 430 0.0007 (2/2747) 0 * Os_TE_188764 Os_TE_188764 Chr7 28722122 28722121 - MPING 430 0.0007 (2/2858) 0 * Os_TE_188765 Os_TE_188752 Chr7 28718153 28718152 + ORSgTETNOOT01668 244 0.0017 (5/2986) 0 * * Os_TE_188750 Chr7 28717812 28717813 + F770 284 0.0030 (9/2994) 0 * * Os_TE_188745 Chr7 28716903 28716904 + RIREX_LTR 8828 0.0027 (8/2980) 0 * Os_TE_188744 Os_TE_188744 Chr7 28716899 28716898 - RIREX_LTR 8828 0.0027 (8/2974) 0 * Os_TE_188745 Os_TE_188701 Chr7 28699129 28699130 - ORSgTEMT00600085 364 0.0003 (1/2991) 0 * Os_TE_188700 Os_TE_188700 Chr7 28699127 28699126 + CASTAWAY 364 0.0003 (1/2990) 0 * Os_TE_188701 Os_TE_188698 Chr7 28698412 28698411 - INDITTO 263 0.0003 (1/2988) 0 * * Os_TE_188697 Chr7 28698225 28698226 + DS-RICE3N 525 0.0003 (1/2981) 0 * * Os_TE_188696 Chr7 28697561 28697562 - INDITTO 263 0.0299 (89/2977) 0 * Os_TE_188695 Os_TE_188695 Chr7 28697559 28697558 + INDITTO 263 0.0299 (89/2981) 0 * Os_TE_188696 Os_TE_188661 Chr7 28686357 28686358 + COPI2_LTR 4733 0.1099 (323/2940) 0 * Os_TE_188660 Os_TE_188660 Chr7 28686353 28686352 - COPI2_LTR 4733 0.1212 (360/2971) 0 * Os_TE_188661 Os_TE_188652 Chr7 28683139 28683140 - RETROSAT4_LTR 13504 0.6400 (1906/2978) 0 * * Os_TE_188648 Chr7 28682966 28682967 + MPING 430 0.0003 (1/2985) 0 * * Os_TE_188646 Chr7 28682918 28682919 + RETROSAT4_LTR 13504 0.0027 (8/2988) 0 * Os_TE_188645 Os_TE_188645 Chr7 28682914 28682913 - SZ-35LTR 3853 0.0027 (8/2987) 0 * Os_TE_188646 Os_TE_188644 Chr7 28682712 28682713 + ORSgTEMT00300063 413 0.0003 (1/2938) 0 * * Os_TE_188629 Chr7 28677896 28677897 - OSTE20 496 0.0020 (6/2985) 0 * * Os_TE_188627 Chr7 28677852 28677853 + INDITTO 263 0.0030 (9/2996) 0 * * Os_TE_188611 Chr7 28668488 28662840 + SZ-56_LTR 5650 0.3762 (1126/2993) 1 Intact Os_TE_188601 Os_TE_188601 Chr7 28662840 28668488 - SZ-56_LTR 5650 0.3780 (1128/2984) 1 Intact Os_TE_188611 Os_TE_188589 Chr7 28654623 28654622 + SZ-48LTR 3632 0.7339 (1404/1913) 0 * * Os_TE_188453 Chr7 28591098 28591097 - TRUNCATOR2_LTR 2904 0.0004 (1/2796) 0 * * Os_TE_188449 Chr7 28587261 28587262 - SC-8_LTR 4951 0.0040 (11/2773) 0 * Os_TE_188448 Os_TE_188448 Chr7 28587257 28587256 + SC-8_LTR 4951 0.0039 (11/2785) 0 * Os_TE_188449 Os_TE_188418 Chr7 28577840 28577258 - JOUZHENA 607 0.3473 (995/2865) 1 Intact Os_TE_188416 Os_TE_188416 Chr7 28577258 28577840 + JOUZHENA 607 0.3770 (1116/2960) 1 Intact Os_TE_188418 Os_TE_188386 Chr7 28555184 28555183 - ORSgTEMT00700002 381 0.0003 (1/2977) 0 * * Os_TE_188377 Chr7 28550835 28550836 - MuDR3_OS 8604 0.0020 (6/2982) 0 * Os_TE_188376 Os_TE_188376 Chr7 28550827 28550826 + MuDR3_OS 8604 0.0020 (6/2987) 0 * Os_TE_188377 Os_TE_188372 Chr7 28550600 28550601 + SZ-48LTR 3632 0.0007 (2/2996) 0 * Os_TE_188371 Os_TE_188371 Chr7 28550596 28550595 - SZ-48LTR 3632 0.0007 (2/2995) 0 * Os_TE_188372 Os_TE_188370 Chr7 28546534 28542971 + HATORY 3570 0.1636 (487/2977) 1 Intact * Os_TE_188363 Chr7 28542048 28542049 - COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_188362 Os_TE_188362 Chr7 28542044 28542043 + COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_188363 Os_TE_188346 Chr7 28531484 28531485 - F569 228 0.0020 (6/2996) 0 * Os_TE_188345 Os_TE_188345 Chr7 28531482 28531481 + F569 228 0.0020 (6/2993) 0 * Os_TE_188346 Os_TE_188332 Chr7 28528629 28528630 + SZ-55_LTR 10318 0.6349 (1890/2977) 0 * Os_TE_188331 Os_TE_188331 Chr7 28528625 28528624 - SZ-55_LTR 10318 0.6316 (1879/2975) 0 * Os_TE_188332 Os_TE_188304 Chr7 28521897 28510602 + RIRE2_LTR 11306 0.1756 (515/2933) 1 Intact Os_TE_188299 Os_TE_188299 Chr7 28510602 28521897 - RIRE2_LTR 11306 0.1682 (490/2913) 1 Intact Os_TE_188304 Os_TE_188293 Chr7 28510295 28510296 - ORSgTEMT06000327 192 0.0003 (1/2908) 0 * * Os_TE_188233 Chr7 28490429 28490430 - ORSgTETN00200001 10994 0.0003 (1/2988) 0 * Os_TE_188232 Os_TE_188232 Chr7 28490427 28490426 + SPMLIKE 10989 0.0003 (1/2988) 0 * Os_TE_188233 Os_TE_188228 Chr7 28489171 28489172 - AMYLTP 383 0.6178 (1843/2983) 0 * Os_TE_188227 Os_TE_188227 Chr7 28489167 28489166 + AMYLTP 383 0.6174 (1846/2990) 0 * Os_TE_188228 Os_TE_188215 Chr7 28485172 28485173 + RIRE5-LTR_OS 6427 0.0020 (6/2997) 0 * Os_TE_188214 Os_TE_188214 Chr7 28485165 28485164 - RIRE5-LTR_OS 6427 0.0020 (6/2998) 0 * Os_TE_188215 Os_TE_188201 Chr7 28480706 28480705 + F770 284 0.0013 (4/2996) 0 * * Os_TE_188192 Chr7 28473161 28473160 + ORSiTERTOOT00296 5553 0.0007 (2/2994) 0 * * Os_TE_188191 Chr7 28468147 28463288 - TESSBIG 4057 0.4092 (1221/2984) 0.92 Intact Os_TE_188189 Os_TE_188189 Chr7 28463288 28468147 + TESSBIG 4057 0.4064 (1207/2970) 0.75 Intact Os_TE_188191 Os_TE_188181 Chr7 28458222 28458221 - COPIA2-LTR_OS 6433 0.0003 (1/2983) 0 * * Os_TE_188169 Chr7 28451564 28451563 - RIREX_LTR 8828 0.0010 (3/2980) 0 * * Os_TE_188144 Chr7 28438905 28438904 + MPING 430 0.0003 (1/2994) 0 * * Os_TE_188141 Chr7 28435790 28435791 + RIREX_LTR 8828 0.0004 (1/2358) 0 * Os_TE_188140 Os_TE_188140 Chr7 28435786 28435785 - RIREX_LTR 8828 0.0003 (1/2975) 0 * Os_TE_188141 Os_TE_188137 Chr7 28432544 28432545 - SC-3_LTR 5748 0.0010 (3/2980) 0 * Os_TE_188136 Os_TE_188136 Chr7 28432540 28432539 + ORSiTERTOOT00296 5553 0.0010 (3/2975) 0 * Os_TE_188137 Os_TE_188128 Chr7 28423317 28423318 - INDITTO 263 0.0003 (1/2970) 0 * Os_TE_188127 Os_TE_188127 Chr7 28423315 28423314 + INDITTO 263 0.0003 (1/2971) 0 * Os_TE_188128 Os_TE_188126 Chr7 28423027 28423028 - SZ-9LTR 965 0.0031 (9/2897) 0 * Os_TE_188125 Os_TE_188125 Chr7 28423023 28423022 + SZ-9LTR 965 0.0034 (10/2953) 0 * Os_TE_188126 Os_TE_188123 Chr7 28422158 28422157 - STOWAWAY51_OS 246 0.0037 (11/2958) 0 * Os_TE_188122 Os_TE_188122 Chr7 28422155 28422156 + ORSgTEMT01601591 242 0.0014 (4/2935) 0 * Os_TE_188123 Os_TE_188108 Chr7 28419419 28419420 + RIRE2_LTR 11306 0.0007 (2/2994) 0 * * Os_TE_188107 Chr7 28419242 28419241 + ORSgTEMT00101674 340 0.0027 (8/2998) 0 * Os_TE_188106 Os_TE_188106 Chr7 28419229 28419230 + NDNA1TNA_OS 334 0.0027 (8/2996) 0 * Os_TE_188107 Os_TE_188090 Chr7 28410560 28410561 + ORSgTEMT01601591 242 0.0003 (1/2988) 0 * * Os_TE_188089 Chr7 28410180 28410181 - NDNA1TNA_OS 334 0.0027 (8/2994) 0 * Os_TE_188088 Os_TE_188088 Chr7 28410178 28410177 + NDNA1TNA_OS 334 0.0027 (8/2999) 0 * Os_TE_188089 Os_TE_188085 Chr7 28407762 28407761 - ORSgTERT00200284 429 0.0003 (1/2988) 0 * * Os_TE_188063 Chr7 28393818 28393819 + ORSiTERTOOT00296 5553 0.0010 (3/2997) 0 * Os_TE_188062 Os_TE_188062 Chr7 28393814 28393813 - SC-3_LTR 5748 0.0010 (3/2995) 0 * Os_TE_188063 Os_TE_188059 Chr7 28392547 28392548 + ORSiTERTOOT00296 5553 0.0020 (6/2994) 0 * Os_TE_188058 Os_TE_188058 Chr7 28392543 28392542 - SC-3_LTR 5748 0.0020 (6/2995) 0 * Os_TE_188059 Os_TE_188030 Chr7 28385782 28385783 + ORSgTERT00200875 5747 0.0003 (1/2973) 0 * * Os_TE_188023 Chr7 28382395 28382396 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_188022 Os_TE_188022 Chr7 28382391 28382390 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_188023 Os_TE_188021 Chr7 28382251 28382252 - RIREX_LTR 8828 0.0321 (96/2993) 0 * Os_TE_188020 Os_TE_188020 Chr7 28382247 28382246 + RIREX_LTR 8828 0.0334 (100/2992) 0 * Os_TE_188021 Os_TE_187989 Chr7 28369520 28369519 + MPING 430 0.0531 (158/2973) 0 * * Os_TE_187986 Chr7 28367568 28367567 - TREP215 239 0.0017 (5/2993) 0 * Os_TE_187985 Os_TE_187985 Chr7 28367565 28367566 + ORSgTEMT01602051 240 0.0013 (4/2992) 0 * Os_TE_187986 Os_TE_187984 Chr7 28367249 28367248 + ORSgTEMT01602181 239 0.0054 (16/2970) 0 * Os_TE_187983 Os_TE_187983 Chr7 28367246 28367247 - ORSgTEMT01601768 238 0.0057 (17/2966) 0 * Os_TE_187984 Os_TE_187980 Chr7 28364878 28364879 + SZ-62LTR 3649 0.0745 (223/2992) 0 * Os_TE_187979 Os_TE_187979 Chr7 28364874 28364873 - SZ-62LTR 3649 0.0773 (231/2987) 0 * Os_TE_187980 Os_TE_187978 Chr7 28364861 28364860 - ORSgTEMT01601696 238 0.0018 (5/2795) 0 * Os_TE_187977 Os_TE_187977 Chr7 28364858 28364859 + ORSgTEMT01601934 207 0.0017 (5/2975) 0 * Os_TE_187978 Os_TE_187952 Chr7 28355852 28355853 - ORSiTERT00400003 330 0.0007 (2/2985) 0 * * Os_TE_187945 Chr7 28350260 28350261 - MPING 430 0.0003 (1/2968) 0 * Os_TE_187944 Os_TE_187944 Chr7 28350258 28350257 + MPING 430 0.0003 (1/2968) 0 * Os_TE_187945 Os_TE_187943 Chr7 28348050 28348051 + SZ-22_LTR 4403 0.0013 (4/2972) 0 * * Os_TE_187938 Chr7 28346021 28346022 - SZ-25LTR 330 0.0017 (5/2993) 0 * Os_TE_187937 Os_TE_187937 Chr7 28346017 28346016 + COPI1_LTR 4721 0.0017 (5/2994) 0 * Os_TE_187938 Os_TE_187936 Chr7 28344021 28344022 + COPIA2-LTR_OS 6433 0.0007 (2/2987) 0 * Os_TE_187935 Os_TE_187935 Chr7 28344017 28344016 - COPIA2-LTR_OS 6433 0.0007 (2/2988) 0 * Os_TE_187936 Os_TE_187917 Chr7 28340495 28340496 + NDNA1TNA_OS 334 0.0055 (16/2924) 0 * Os_TE_187916 Os_TE_187916 Chr7 28340493 28340492 - NDNA1TNA_OS 334 0.0055 (16/2929) 0 * Os_TE_187917 Os_TE_187903 Chr7 28324470 28324469 - ORSgTEMT02400246 177 0.0077 (13/1686) 0 * Os_TE_187902 Os_TE_187902 Chr7 28324469 28324470 - TYPEM 227 0.0098 (16/1630) 0 * Os_TE_187903 Os_TE_187897 Chr7 28323519 28323518 + ORSgTETN00400008 386 0.0003 (1/2989) 0 * * Os_TE_187880 Chr7 28320152 28320153 - MPING 430 0.0007 (2/2983) 0 * Os_TE_187879 Os_TE_187879 Chr7 28320150 28320149 + MPING 430 0.0007 (2/2987) 0 * Os_TE_187880 Os_TE_187872 Chr7 28317494 28317493 - SZ-35LTR 3853 0.0047 (2/426) 0 * * Os_TE_187868 Chr7 28313880 28313881 + ORSiTERTOOT00296 5553 0.0010 (3/2995) 0 * Os_TE_187867 Os_TE_187867 Chr7 28313876 28313875 - SC-3_LTR 5748 0.0010 (3/2992) 0 * Os_TE_187868 Os_TE_187859 Chr7 28310379 28310378 + ORSiTERTOOT00296 5553 0.0003 (1/2989) 0 * * Os_TE_187858 Chr7 28307191 28307192 + AMYLTP 383 0.0007 (2/2994) 0 * Os_TE_187857 Os_TE_187857 Chr7 28307183 28307182 - AMYLTP 383 0.0007 (2/2994) 0 * Os_TE_187858 Os_TE_187847 Chr7 28298902 28298903 + COPI2_LTR 4733 0.0027 (8/2923) 0 * Os_TE_187846 Os_TE_187846 Chr7 28298898 28298897 - COPI2_LTR 4733 0.0027 (8/2922) 0 * Os_TE_187847 Os_TE_187833 Chr7 28294201 28294200 + SZ-9LTR 965 0.0003 (1/2928) 0 * * Os_TE_187828 Chr7 28292740 28292741 + ORSiTERTOOT00033 4884 0.0027 (8/2997) 0 * * Os_TE_187794 Chr7 28276919 28276920 - STOWAWAY51_OS 246 0.0003 (1/2971) 0 * * Os_TE_187782 Chr7 28263339 28263340 - SC-8_LTR 4951 0.0405 (121/2985) 0 * Os_TE_187781 Os_TE_187781 Chr7 28263335 28263334 + SC-8_LTR 4951 0.0406 (121/2982) 0 * Os_TE_187782 Os_TE_187748 Chr7 28250734 28250735 - COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_187747 Os_TE_187747 Chr7 28250730 28250729 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_187748 Os_TE_187736 Chr7 28241828 28241829 + ORSiTERTOOT00296 5553 0.0097 (29/2998) 0 * Os_TE_187735 Os_TE_187735 Chr7 28241824 28241823 - SC-3_LTR 5748 0.0097 (29/2993) 0 * Os_TE_187736 Os_TE_187709 Chr7 28229199 28229198 - ORSiTERTOOT00332 5395 0.0003 (1/2970) 0 * * Os_TE_187672 Chr7 28207876 28207877 - SC-3_LTR 5748 0.0003 (1/2992) 0 * Os_TE_187671 Os_TE_187671 Chr7 28207872 28207871 + ORSiTERTOOT00296 5553 0.0003 (1/2991) 0 * Os_TE_187672 Os_TE_187670 Chr7 28205873 28205874 - TRUNCATOR2_LTR 2904 0.0003 (1/2976) 0 * Os_TE_187669 Os_TE_187669 Chr7 28205869 28205868 + ORSiCMCM00100019 2717 0.0003 (1/2952) 0 * Os_TE_187670 Os_TE_187597 Chr7 28174076 28173947 - ORSgTEMT00501165 134 0.8771 (2597/2961) 1 Intact Os_TE_187595 Os_TE_187595 Chr7 28173936 28174071 + ORSgTEMT00500498 155 0.8682 (2555/2943) 1 Intact Os_TE_187597 Os_TE_187589 Chr7 28172313 28172494 - COWARD 200 0.7667 (2258/2945) 1 Intact * Os_TE_187587 Chr7 28171675 28172211 + CLOUD-3 550 0.7633 (2260/2961) 1 Intact * Os_TE_187572 Chr7 28169550 28169312 - ORSgTEMT01601768 238 0.7331 (2019/2754) 1 Intact Os_TE_187570 Os_TE_187570 Chr7 28169312 28169550 + ORSgTEMT01602181 239 0.7473 (2176/2912) 1 Intact Os_TE_187572 Os_TE_187566 Chr7 28163172 28163171 + OLO24 345 0.0024 (7/2972) 0 * * Os_TE_187560 Chr7 28162137 28162138 + COPI2_LTR 4733 0.0033 (10/2992) 0 * Os_TE_187559 Os_TE_187559 Chr7 28162133 28162132 - COPI2_LTR 4733 0.0033 (10/2995) 0 * Os_TE_187560 Os_TE_187556 Chr7 28161492 28161285 - COWARD 200 0.8702 (2587/2973) 1 Intact * Os_TE_187530 Chr7 28156656 28156655 + SPMLIKE 10989 0.0010 (3/2975) 0 * * Os_TE_187529 Chr7 28156244 28156245 - INDITTO 263 0.0008 (2/2611) 0 * * Os_TE_187527 Chr7 28155211 28155033 - ORSgTEMT03500002 194 0.8710 (2600/2985) 1 Intact * Os_TE_187507 Chr7 28151638 28151639 - ORSgTEMT00600524 364 0.0008 (2/2550) 0 * Os_TE_187506 Os_TE_187506 Chr7 28151636 28151635 + ORSgTEMT00600272 361 0.0008 (2/2559) 0 * Os_TE_187507 Os_TE_187496 Chr7 28150920 28150921 - MPING 430 0.0157 (46/2938) 0 * Os_TE_187495 Os_TE_187495 Chr7 28150918 28150917 + MPING 430 0.0155 (46/2977) 0 * Os_TE_187496 Os_TE_187493 Chr7 28150763 28150764 - MPING 430 0.0004 (1/2620) 0 * Os_TE_187492 Os_TE_187492 Chr7 28150761 28150760 + MPING 430 0.0003 (1/2992) 0 * Os_TE_187493 Os_TE_187491 Chr7 28150755 28150754 - TYPEM 227 0.8725 (2608/2989) 0.92 * * Os_TE_187489 Chr7 28150720 28150719 + COPI2_LTR 4733 0.0004 (1/2613) 0 * * Os_TE_187487 Chr7 28150485 28150486 + ORSgTEMT00600272 361 0.1373 (409/2978) 0 * * Os_TE_187485 Chr7 28149914 28149913 + STOWAWAY44_OS 240 0.0004 (1/2590) 0 * Os_TE_187484 Os_TE_187484 Chr7 28149911 28149912 - STOWAWAY44_OS 240 0.0003 (1/2970) 0 * Os_TE_187485 Os_TE_187461 Chr7 28142651 28142652 - INDITTO 263 0.0004 (1/2554) 0 * * Os_TE_187421 Chr7 28119184 28119515 + ORSgTEMT00100694 349 0.7097 (2124/2993) 1 Intact * Os_TE_187361 Chr7 28098428 28098427 + TRUNCATOR 2918 0.0037 (11/2976) 0 * Os_TE_187360 Os_TE_187360 Chr7 28098427 28098428 - TRUNCATOR 2918 0.0034 (10/2980) 0 * Os_TE_187361 Os_TE_187326 Chr7 28071675 28071674 - TREP215 239 0.0017 (5/2991) 0 * * Os_TE_187324 Chr7 28071591 28071592 - ORSgTEMT01600662 238 0.0017 (5/2994) 0 * * Os_TE_187295 Chr7 28060183 28060184 + ORSgTEMT00100011 343 0.0003 (1/2989) 0 * * Os_TE_187264 Chr7 28050846 28050845 + OLO24 345 0.0418 (125/2990) 0 * * Os_TE_187242 Chr7 28047564 28047563 - ORSgTEMT00900667 250 0.0013 (4/2968) 0 * * Os_TE_187238 Chr7 28047117 28047116 - ORSgTEMT01602467 227 0.0014 (4/2953) 0 * * Os_TE_187226 Chr7 28044405 28044404 - RIREX_LTR 8828 0.0003 (1/2969) 0 * * Os_TE_187209 Chr7 28020408 28020407 + ORSiTERTOOT00034 791 0.0066 (19/2870) 0 * * Os_TE_187193 Chr7 28018179 28018178 - TYPEM 227 0.0003 (1/2922) 0 * * Os_TE_187183 Chr7 28016743 28016744 - RETROSAT4_LTR 13504 0.0038 (11/2906) 0 * Os_TE_187182 Os_TE_187182 Chr7 28016739 28016738 + RETROSAT4_LTR 13504 0.0031 (9/2878) 0 * Os_TE_187183 Os_TE_187181 Chr7 28015756 28015757 + COPI2_LTR 4733 0.0030 (9/2988) 0 * Os_TE_187180 Os_TE_187180 Chr7 28015752 28015751 - COPI2_LTR 4733 0.0030 (9/2985) 0 * Os_TE_187181 Os_TE_187174 Chr7 28011946 28011945 - ORSgTEMT02400246 177 0.0468 (128/2735) 0 * Os_TE_187173 Os_TE_187173 Chr7 28011945 28011946 - TYPEM 227 0.0458 (127/2772) 0 * Os_TE_187174 Os_TE_187160 Chr7 28009174 28009173 + ID-4 284 0.0441 (131/2972) 0 * * Os_TE_187157 Chr7 28008391 28008392 + ORSgTEMT00500560 148 0.0414 (115/2775) 0 * * Os_TE_187156 Chr7 28007672 28007673 + AMYLTP 383 0.0014 (4/2948) 0 * Os_TE_187155 Os_TE_187155 Chr7 28007664 28007663 - AMYLTP 383 0.0014 (4/2947) 0 * Os_TE_187156 Os_TE_187144 Chr7 28002762 28002763 - ORSgTEMT01601768 238 0.0104 (31/2992) 0 * * Os_TE_187138 Chr7 28001836 28001837 + ORSgTEMT01701636 175 0.3605 (1060/2940) 0 * * Os_TE_187135 Chr7 28000929 28000930 - ORSgTEMT01601208 238 0.0003 (1/2949) 0 * * Os_TE_187130 Chr7 28000635 28000397 - ORSgTEMT01601432 239 0.6215 (1714/2758) 1 Intact Os_TE_187129 Os_TE_187129 Chr7 28000397 28000635 + ORSgTEMT01602181 239 0.6384 (1727/2705) 1 Intact Os_TE_187130 Os_TE_187091 Chr7 27989157 27989266 - STOWAWAY1_OS 149 0.6430 (1819/2829) 1 Intact * Os_TE_187090 Chr7 27989123 27989124 + SZ-40LTR 2465 0.0600 (111/1850) 0 * * Os_TE_187089 Chr7 27989114 27989113 - ORSgTEMT01600152 226 0.3860 (1128/2922) 0 * * Os_TE_187079 Chr7 27975118 27974905 - ORSgTEMT01602350 236 0.5901 (629/1066) -1 Intact * Os_TE_187060 Chr7 27971306 27971305 - SINE9_OS 293 0.4101 (1221/2977) 0 * Os_TE_187059 Os_TE_187059 Chr7 27971305 27971306 + STOWAWAY13_OS 251 0.4054 (1202/2965) 0 * Os_TE_187060 Os_TE_187057 Chr7 27970905 27970645 - STOWAWAY13_OS 251 0.6189 (1741/2813) 1 Intact Os_TE_187052 Os_TE_187052 Chr7 27970645 27970905 + STOWAWAY13_OS 251 0.6322 (1722/2724) 1 Intact Os_TE_187057 Os_TE_187050 Chr7 27970522 27970521 - DS-RICE2N 613 0.0006 (1/1623) 0 * * Os_TE_187049 Chr7 27968891 27968892 - MPING 430 0.0010 (3/2987) 0 * Os_TE_187048 Os_TE_187048 Chr7 27968889 27968888 + MPING 430 0.0007 (2/2979) 0 * Os_TE_187049 Os_TE_187039 Chr7 27960034 27960035 - OSTE9 421 0.0003 (1/2872) 0 * * Os_TE_187031 Chr7 27959277 27959278 + ORSgTEMT00100272 356 0.4574 (1353/2958) 0 * * Os_TE_187017 Chr7 27957675 27957676 - MUDRN4_OS 332 0.4504 (1336/2966) 0 * Os_TE_187016 Os_TE_187016 Chr7 27957665 27957664 - MUDRN4_OS 332 0.4176 (1189/2847) 0 * Os_TE_187017 Os_TE_187012 Chr7 27952176 27952177 - SC-3_LTR 5748 0.0010 (3/2993) 0 * Os_TE_187011 Os_TE_187011 Chr7 27952172 27952171 + ORSiTERTOOT00296 5553 0.0010 (3/2988) 0 * Os_TE_187012 Os_TE_186972 Chr7 27925537 27925538 - TYPEM 227 0.0729 (218/2992) 0 * Os_TE_186971 Os_TE_186971 Chr7 27925536 27925535 - ORSgTEMT02400179 221 0.0725 (217/2992) 0 * Os_TE_186972 Os_TE_186969 Chr7 27925249 27925248 - RETROSAT2LTR 12796 0.0037 (11/2992) 0 * * Os_TE_186967 Chr7 27924655 27924656 + MuDR2_OS 6770 0.0037 (11/2984) 0 * Os_TE_186966 Os_TE_186966 Chr7 27924646 27924645 - MuDR2_OS 6770 0.0030 (9/2984) 0 * Os_TE_186967 Os_TE_186949 Chr7 27912631 27912632 - RIREX_LTR 8828 0.0003 (1/2979) 0 * * Os_TE_186945 Chr7 27908625 27908626 - SC-3_LTR 5748 0.0003 (1/2992) 0 * Os_TE_186944 Os_TE_186944 Chr7 27908621 27908620 + ORSiTERTOOT00296 5553 0.0003 (1/2995) 0 * Os_TE_186945 Os_TE_186890 Chr7 27895638 27895639 + ORSgTETNOOT00221 261 0.0010 (3/2936) 0 * Os_TE_186889 Os_TE_186889 Chr7 27895636 27895635 + INDITTO 263 0.0010 (3/2938) 0 * Os_TE_186890 Os_TE_186887 Chr7 27895335 27895334 + ORSgTEMT00101121 331 0.3084 (910/2951) 0 * * Os_TE_186886 Chr7 27895330 27895331 + NDNA2TNA_OS 346 0.3043 (892/2931) 0 * Os_TE_186885 Os_TE_186885 Chr7 27895329 27895328 - NDNA2TNA_OS 346 0.3092 (911/2946) 0 * Os_TE_186886 Os_TE_186884 Chr7 27895220 27895221 - INDITTO 263 0.0159 (39/2446) 0 * * Os_TE_186869 Chr7 27891749 27891750 + COPIA2-LTR_OS 6433 0.0004 (1/2589) 0 * * Os_TE_186865 Chr7 27891647 27891646 + RIREX_LTR 8828 0.0004 (1/2703) 0 * * Os_TE_186860 Chr7 27888793 27888792 - ORSgTETNOOT01053 196 0.0013 (4/2995) 0 * * Os_TE_186851 Chr7 27881745 27881746 + COPI2_LTR 4733 0.0003 (1/2992) 0 * * Os_TE_186849 Chr7 27879765 27879766 - ORSiTERTOOT00329 5144 0.0037 (11/2994) 0 * * Os_TE_186847 Chr7 27879609 27879610 - INDITTO 263 0.0023 (7/2993) 0 * Os_TE_186846 Os_TE_186846 Chr7 27879607 27879606 + INDITTO 263 0.0023 (7/2989) 0 * Os_TE_186847 Os_TE_186813 Chr7 27864575 27864917 + ORSgTEMT00100694 349 0.2602 (371/1426) 1 Intact * Os_TE_186810 Chr7 27861029 27861030 + RETRO2_LTR 12874 0.1061 (310/2922) 0 * * Os_TE_186807 Chr7 27860991 27860990 + RETRO2_LTR 12874 0.0202 (59/2923) 0 * * Os_TE_186803 Chr7 27860058 27860057 - RIREX_LTR 8828 0.0114 (34/2990) 0 * * Os_TE_186802 Chr7 27859794 27859795 - NDNA1TNA_OS 334 0.1042 (312/2994) 0 * Os_TE_186801 Os_TE_186801 Chr7 27859792 27859791 + NDNA1TNA_OS 334 0.1026 (307/2992) 0 * Os_TE_186802 Os_TE_186798 Chr7 27858883 27858570 - NDNA1TNA_OS 334 0.1201 (360/2997) 1 Intact * Os_TE_186784 Chr7 27850616 27850617 - RETRO2_LTR 12874 0.1101 (300/2725) 0 * * Os_TE_186773 Chr7 27846196 27846197 + ORSgTEMT00600272 361 0.0003 (1/2933) 0 * * Os_TE_186771 Chr7 27845440 27845439 + MuDR4_OS 7610 0.1141 (334/2927) 0 * * Os_TE_186768 Chr7 27842923 27842924 - SC-8_LTR 4951 0.0003 (1/2984) 0 * * Os_TE_186766 Chr7 27841399 27841400 - MuDR3_OS 8604 0.0140 (42/2994) 0 * Os_TE_186765 Os_TE_186765 Chr7 27841390 27841389 - MuDR3_OS 8604 0.0130 (39/2993) 0 * Os_TE_186766 Os_TE_186762 Chr7 27841109 27841110 - OLO24 345 0.0003 (1/2995) 0 * Os_TE_186761 Os_TE_186761 Chr7 27841107 27841106 + OLO24 345 0.0003 (1/2994) 0 * Os_TE_186762 Os_TE_186727 Chr7 27820705 27820706 + ORSiTERTOOT00296 5553 0.0007 (2/2990) 0 * Os_TE_186726 Os_TE_186726 Chr7 27820701 27820700 - SC-3_LTR 5748 0.0003 (1/2991) 0 * Os_TE_186727 Os_TE_186710 Chr7 27816916 27816917 - CASTAWAY 364 0.0024 (7/2968) 0 * * Os_TE_186691 Chr7 27808419 27808418 + ORSgTETNOOT00908 242 0.4943 (1479/2992) 0 * * Os_TE_186689 Chr7 27807758 27807759 - INDITTO 263 0.2426 (726/2993) 0 * * Os_TE_186673 Chr7 27801446 27801445 - COPI2_LTR 4733 0.0003 (1/2997) 0 * * Os_TE_186641 Chr7 27785389 27785390 + CRM-LTR_OS 7749 0.0003 (1/2997) 0 * Os_TE_186640 Os_TE_186640 Chr7 27785385 27785384 - CRM-LTR_OS 7749 0.0003 (1/2997) 0 * Os_TE_186641 Os_TE_186622 Chr7 27778124 27778123 + MERMITED 1572 0.0020 (6/2995) 0 * * Os_TE_186600 Chr7 27773763 27773764 + ORSgTETNOOT00072 203 0.0003 (1/2994) 0 * Os_TE_186599 Os_TE_186599 Chr7 27773754 27773753 + ORSgTETNOOT00032 218 0.0003 (1/2994) 0 * Os_TE_186600 Os_TE_186594 Chr7 27772749 27772750 - RIRE2_LTR 11306 0.1409 (421/2988) 0 * Os_TE_186593 Os_TE_186593 Chr7 27772745 27772744 + RIRE2_LTR 11306 0.1455 (436/2997) 0 * Os_TE_186594 Os_TE_186588 Chr7 27770456 27770455 + COPIA2-LTR_OS 6433 0.0003 (1/2880) 0 * * Os_TE_186583 Chr7 27769925 27769926 + ORSgTETNOOT01219 231 0.1441 (429/2977) 0 * Os_TE_186582 Os_TE_186582 Chr7 27769923 27769922 + ORSgTETNOOT00908 242 0.1430 (425/2972) 0 * Os_TE_186583 Os_TE_186548 Chr7 27760144 27760145 - COPI2_LTR 4733 0.0003 (1/2992) 0 * Os_TE_186547 Os_TE_186547 Chr7 27760140 27760139 + COPI2_LTR 4733 0.0003 (1/2991) 0 * Os_TE_186548 Os_TE_186545 Chr7 27759494 27759493 + MPING 430 0.0003 (1/2976) 0 * * Os_TE_186544 Chr7 27759403 27759404 + HARB-1_OS 5166 0.0003 (1/2980) 0 * Os_TE_186543 Os_TE_186543 Chr7 27759401 27759400 - HARB-1_OS 5166 0.0003 (1/2979) 0 * Os_TE_186544 Os_TE_186533 Chr7 27758141 27758140 + COPI2_LTR 4733 0.0004 (1/2674) 0 * * Os_TE_186531 Chr7 27758016 27758017 - OSTE21 1271 0.5940 (1750/2946) 0 * * Os_TE_186529 Chr7 27752098 27752097 + ORSgTEMT01601122 212 0.5900 (1757/2978) 0 * Os_TE_186528 Os_TE_186528 Chr7 27752095 27752096 + ORSgTEMT01601122 212 0.5747 (1650/2871) 0 * Os_TE_186529 Os_TE_186523 Chr7 27750278 27750031 + ORSgTEMT00901798 232 0.8123 (1285/1582) 1 Intact * Os_TE_186516 Chr7 27749542 27749541 + ORSgTEMT00501629 149 0.5813 (1712/2945) 0 * Os_TE_186515 Os_TE_186515 Chr7 27749536 27749537 - ORSgTEMT00501811 148 0.5766 (1683/2919) 0 * Os_TE_186516 Os_TE_186513 Chr7 27748135 27748134 - MERMITE18E 1528 0.5234 (1378/2633) 0 * * Os_TE_186505 Chr7 27745622 27745623 - NDNA1TNA_OS 334 0.0015 (2/1300) 0 * Os_TE_186504 Os_TE_186504 Chr7 27745620 27745619 + NDNA1TNA_OS 334 0.0023 (3/1299) 0 * Os_TE_186505 Os_TE_186499 Chr7 27745029 27745030 + ORSgTEMT00500201 140 0.5543 (1567/2827) 0 * * Os_TE_186497 Chr7 27743997 27742428 + MERMITE18B 1306 0.4434 (1257/2835) 1 Intact Os_TE_186494 Os_TE_186494 Chr7 27742428 27743997 + MERMITE18B 1306 0.6841 (1306/1909) 1 Intact Os_TE_186497 Os_TE_186492 Chr7 27742035 27742036 + ORSgTEMT00600272 361 0.1573 (464/2949) 0 * Os_TE_186491 Os_TE_186491 Chr7 27742033 27742032 - ORSgTEMT00600524 364 0.1555 (461/2965) 0 * Os_TE_186492 Os_TE_186486 Chr7 27738613 27738614 + F569 228 0.0309 (84/2719) 0 * Os_TE_186485 Os_TE_186485 Chr7 27738611 27738610 - F569 228 0.0283 (79/2792) 0 * Os_TE_186486 Os_TE_186480 Chr7 27732401 27732402 - STOWAWAY11_OS 292 0.0017 (5/2968) 0 * Os_TE_186479 Os_TE_186479 Chr7 27732400 27732399 + STOWAWAY11_OS 292 0.0013 (4/2975) 0 * Os_TE_186480 Os_TE_186478 Chr7 27731420 27731419 - ORSgTEMT01701882 154 0.0003 (1/2962) 0 * * Os_TE_186477 Chr7 27731215 27731062 + STOWAWAY50_OS 174 0.4145 (1219/2941) 1 Intact Os_TE_186476 Os_TE_186476 Chr7 27731062 27731215 - ORSgTEMT01701882 154 0.4203 (1216/2893) 1 Intact Os_TE_186477 Os_TE_186462 Chr7 27721434 27721435 - OSLINE1-4 4779 0.5985 (1790/2991) 0 * * Os_TE_186454 Chr7 27712476 27712687 + ORSgTEMT01602051 240 0.3893 (1113/2859) 1 Intact * Os_TE_186446 Chr7 27711764 27711765 - MPING 430 0.0003 (1/2987) 0 * Os_TE_186445 Os_TE_186445 Chr7 27711762 27711761 + MPING 430 0.0003 (1/2986) 0 * Os_TE_186446 Os_TE_186442 Chr7 27708157 27708156 + F770 284 0.8009 (2394/2989) 0 * * Os_TE_186431 Chr7 27699429 27699430 - ORSgTEMT00901723 248 0.8003 (2373/2965) 0 * * Os_TE_186429 Chr7 27698767 27698768 + STOWAWAY51_OS 246 0.8018 (2382/2971) 0 * * Os_TE_186427 Chr7 27698205 27698206 + ORSiTERTOOT00296 5553 0.0003 (1/2987) 0 * Os_TE_186426 Os_TE_186426 Chr7 27698201 27698200 - SC-3_LTR 5748 0.0003 (1/2989) 0 * Os_TE_186427 Os_TE_186424 Chr7 27689460 27689593 + ORSgTEMT00501823 141 0.2600 (630/2423) 1 Intact * Os_TE_186423 Chr7 27689433 27689432 - ORSgTEMT01701882 154 0.7135 (1539/2157) 0 * * Os_TE_186421 Chr7 27689362 27689224 - ORSgTEMT00500589 151 0.3087 (640/2073) 1 Intact Os_TE_186419 Os_TE_186419 Chr7 27689214 27689355 + ORSgTEMT00501795 147 0.6334 (629/993) 1 Intact Os_TE_186421 Os_TE_186416 Chr7 27688048 27688047 + ORSgTEMT01702111 154 0.8007 (2383/2976) 0 * * Os_TE_186400 Chr7 27679825 27679826 - ORSgTETNOOT00053 263 0.0230 (69/2996) 0 * Os_TE_186399 Os_TE_186399 Chr7 27679823 27679822 - INDITTO 263 0.0230 (69/2994) 0 * Os_TE_186400 Os_TE_186394 Chr7 27677254 27677253 - STOWAWAY51_OS 246 0.0010 (3/2977) 0 * Os_TE_186393 Os_TE_186393 Chr7 27677251 27677252 - STOWAWAY51_OS 246 0.0010 (3/2985) 0 * Os_TE_186394 Os_TE_186379 Chr7 27670529 27670530 + KIDDOC 275 0.0007 (2/2851) 0 * Os_TE_186378 Os_TE_186378 Chr7 27670525 27670524 - KIDDOC 275 0.0004 (1/2831) 0 * Os_TE_186379 Os_TE_186367 Chr7 27668146 27668147 - INDITTO 263 0.0003 (1/2990) 0 * Os_TE_186366 Os_TE_186366 Chr7 27668144 27668143 + ORSgTETNOOT02316 263 0.0003 (1/2988) 0 * Os_TE_186367 Os_TE_186365 Chr7 27667640 27667641 - SC-8_LTR 4951 0.0003 (1/2986) 0 * Os_TE_186364 Os_TE_186364 Chr7 27667636 27667635 + SC-8_LTR 4951 0.0003 (1/2988) 0 * Os_TE_186365 Os_TE_186359 Chr7 27661636 27661637 - SC-8_LTR 4951 0.0013 (4/2989) 0 * Os_TE_186358 Os_TE_186358 Chr7 27661632 27661631 + SC-8_LTR 4951 0.0013 (4/2991) 0 * Os_TE_186359 Os_TE_186342 Chr7 27654330 27654329 + RPO_OS 1983 0.0010 (3/2985) 0 * Os_TE_186341 Os_TE_186341 Chr7 27654329 27654330 - RPO_OS 1983 0.0017 (5/2977) 0 * Os_TE_186342 Os_TE_186340 Chr7 27653146 27653147 - F569 228 0.0314 (94/2997) 0 * Os_TE_186339 Os_TE_186339 Chr7 27653144 27653143 + F569 228 0.0300 (90/2996) 0 * Os_TE_186340 Os_TE_186331 Chr7 27651541 27651542 - ORSgTEMT02400179 221 0.0003 (1/2995) 0 * * Os_TE_186308 Chr7 27646484 27646485 + ORSgTEMT00600272 361 0.0007 (2/2996) 0 * Os_TE_186307 Os_TE_186307 Chr7 27646479 27646478 + ORSgTEMT00600376 329 0.0007 (2/2996) 0 * Os_TE_186308 Os_TE_186299 Chr7 27645032 27645033 + ORSiTERTOOT00226 792 0.0070 (21/2984) 0 * * Os_TE_186295 Chr7 27644408 27644407 + RETRO2A_LTR 12895 0.0037 (11/2981) 0 * * Os_TE_186275 Chr7 27636570 27636569 + ORSgTEMT01701491 162 0.0013 (4/2977) 0 * Os_TE_186274 Os_TE_186274 Chr7 27636567 27636568 + ORSgTEMT01701743 163 0.0017 (5/2974) 0 * Os_TE_186275 Os_TE_186268 Chr7 27633809 27633808 - COPI2_LTR 4733 0.0007 (2/2986) 0 * * Os_TE_186256 Chr7 27628840 27628839 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * * Os_TE_186248 Chr7 27615384 27615385 + RIRE2_LTR 11306 0.0278 (82/2946) 0 * Os_TE_186247 Os_TE_186247 Chr7 27615380 27615379 - RIRE2_LTR 11306 0.0292 (86/2944) 0 * Os_TE_186248 Os_TE_186236 Chr7 27613689 27596963 + RIRE2_LTR 11306 0.1126 (324/2878) 1 Intact Os_TE_186225 Os_TE_186225 Chr7 27596963 27613689 - RIRE2_LTR 11306 0.1148 (331/2884) 1 Intact Os_TE_186236 Os_TE_186220 Chr7 27595293 27595294 - COPIA2-LTR_OS 6433 0.0003 (1/2974) 0 * Os_TE_186219 Os_TE_186219 Chr7 27595289 27595288 + COPIA2-LTR_OS 6433 0.0003 (1/2984) 0 * Os_TE_186220 Os_TE_186210 Chr7 27590390 27590391 - INDITTO 263 0.0003 (1/2934) 0 * Os_TE_186209 Os_TE_186209 Chr7 27590388 27590387 + INDITTO 263 0.0003 (1/2987) 0 * Os_TE_186210 Os_TE_186208 Chr7 27590289 27590056 + ORSgTETNOOT01668 244 0.1090 (324/2973) 1 Intact Os_TE_186206 Os_TE_186206 Chr7 27590056 27590289 - TESS 244 0.4468 (332/743) 1 Intact Os_TE_186208 Os_TE_186204 Chr7 27589863 27590007 + ORSgTEMT00500476 150 0.2484 (741/2983) 1 Intact * Os_TE_186191 Chr7 27588774 27588438 + ORSgTEMT00101341 314 0.2497 (744/2979) 1 Intact Os_TE_186188 Os_TE_186188 Chr7 27588436 27588774 + ORSgTEMT00100272 356 0.2624 (746/2843) 1 Intact Os_TE_186191 Os_TE_186164 Chr7 27579236 27579237 + TWIF 586 0.0014 (1/726) 0 * Os_TE_186163 Os_TE_186163 Chr7 27579229 27579228 - ORSiTETNOOT00134 607 0.0013 (1/742) 0 * Os_TE_186164 Os_TE_186148 Chr7 27570461 27570215 - ORSgTEMT00900099 250 0.1140 (339/2974) 1 Intact * Os_TE_186143 Chr7 27568846 27568845 - RETRO2_LTR 12874 0.0003 (1/2978) 0 * * Os_TE_186141 Chr7 27567538 27567163 + BUHUI 375 0.1137 (335/2947) 1 Intact * Os_TE_186122 Chr7 27555251 27555373 - ORSgTETNOOT01930 140 0.1141 (341/2988) 1 Intact * Os_TE_186106 Chr7 27543061 27543060 - MERMITE18B 1306 0.4427 (1313/2966) 0 * * Os_TE_186091 Chr7 27530794 27530795 - RIRE2_LTR 11306 0.5435 (949/1746) 0 * * Os_TE_186062 Chr7 27515637 27515636 + STOWAWAY47_OS 148 0.1934 (345/1784) 0 * * Os_TE_186018 Chr7 27501022 27500688 + ORSgTEMT00100272 356 0.2324 (688/2961) 1 Intact * Os_TE_185997 Chr7 27494403 27494402 + RIRE2_LTR 11306 0.0004 (1/2503) 0 * * Os_TE_185989 Chr7 27487400 27487401 + TWIF 586 0.2666 (459/1722) 0 * Os_TE_185988 Os_TE_185988 Chr7 27487393 27487392 - ORSiTETNOOT00144 607 0.0231 (30/1297) 0 * Os_TE_185989 Os_TE_185973 Chr7 27483308 27483309 + ORSgTEMT01602141 239 0.0030 (5/1690) 0 * * Os_TE_185968 Chr7 27482287 27482288 - RETRO2_LTR 12874 0.4332 (1206/2784) 0 * * Os_TE_185958 Chr7 27474548 27474549 + STOWAWAY41_OS 264 0.0501 (96/1915) 0 * * Os_TE_185942 Chr7 27471719 27471720 - RETROSAT2LTR 12796 0.0004 (1/2286) 0 * * Os_TE_185934 Chr7 27464764 27464763 - RPO_OS 1983 0.2402 (569/2369) 0 * Os_TE_185933 Os_TE_185933 Chr7 27464763 27464764 + RPO_OS 1983 0.2810 (697/2480) 0 * Os_TE_185934 Os_TE_185930 Chr7 27464575 27464576 - COPIA2-LTR_OS 6433 0.0003 (1/2894) 0 * * Os_TE_185929 Chr7 27464208 27464209 - COPIA2-LTR_OS 6433 0.0004 (1/2823) 0 * * Os_TE_185908 Chr7 27449517 27449518 - ORSgTETN00200001 10994 0.1532 (283/1847) 0 * Os_TE_185907 Os_TE_185907 Chr7 27449515 27449514 + SPMLIKE 10989 0.1541 (284/1843) 0 * Os_TE_185908 Os_TE_185902 Chr7 27447042 27447043 - COPIA2-LTR_OS 6433 0.0005 (1/1845) 0 * Os_TE_185901 Os_TE_185901 Chr7 27447038 27447037 + COPIA2-LTR_OS 6433 0.0005 (1/1865) 0 * Os_TE_185902 Os_TE_185899 Chr7 27446231 27446232 - OSTONOR1_LTR 6440 0.0506 (93/1838) 0 * Os_TE_185898 Os_TE_185898 Chr7 27446227 27446226 + OSTONOR1_LTR 6440 0.0506 (93/1838) 0 * Os_TE_185899 Os_TE_185897 Chr7 27444393 27444394 + MPING 430 0.0264 (48/1818) 0 * Os_TE_185896 Os_TE_185896 Chr7 27444391 27444390 - MPING 430 0.0272 (50/1837) 0 * Os_TE_185897 Os_TE_185892 Chr7 27443156 27443157 - KIDDOB 280 0.0005 (1/1838) 0 * * Os_TE_185883 Chr7 27436535 27436534 + ORSgTEMT00700017 386 0.0011 (2/1829) 0 * * Os_TE_185861 Chr7 27426120 27426119 + TWIF 586 0.0046 (9/1953) 0 * * Os_TE_185842 Chr7 27420354 27410547 + RETRO1_LTR 8314 0.3758 (927/2467) 1 Intact * Os_TE_185812 Chr7 27382859 27394555 - ENSPM4_OS 11610 0.5035 (924/1835) 1 Intact * Os_TE_185805 Chr7 27374328 27337142 + TRUNCATOR 2918 0.4398 (928/2110) 1 Intact Os_TE_185773 Os_TE_185773 Chr7 27337144 27356380 - ORSiTERT00200154 9386 0.4376 (922/2107) 1 Intact Os_TE_185805 Os_TE_185766 Chr7 27335731 27335732 - SZ-52_LTR 13107 0.0152 (27/1773) 0 * Os_TE_185765 Os_TE_185765 Chr7 27335727 27335726 + SZ-52_LTR 13107 0.0513 (94/1833) 0 * Os_TE_185766 Os_TE_185764 Chr7 27334713 27334712 - RETROSAT2LTR 12796 0.3438 (383/1114) -1 * * Os_TE_185755 Chr7 27331010 27331011 - ORSiTETNOOT00144 607 0.0232 (69/2971) 0 * * Os_TE_185754 Chr7 27330935 27330936 + ORSgTETNOOT00221 261 0.3978 (1187/2984) 0 * * Os_TE_185742 Chr7 27330168 27330169 - RIREX_LTR 8828 0.0262 (54/2058) 0 * Os_TE_185741 Os_TE_185741 Chr7 27330164 27330163 + RIREX_LTR 8828 0.0259 (53/2048) 0 * Os_TE_185742 Os_TE_185740 Chr7 27330016 27330017 + CLOUD-7 495 0.0005 (1/1995) 0 * Os_TE_185739 Os_TE_185739 Chr7 27330010 27330009 + CLOUD-7 495 0.0005 (1/2031) 0 * Os_TE_185740 Os_TE_185738 Chr7 27329999 27329998 - TRUNCATOR 2918 0.0465 (95/2042) 0 * Os_TE_185737 Os_TE_185737 Chr7 27329998 27329999 + TRUNCATOR 2918 0.0517 (104/2012) 0 * Os_TE_185738 Os_TE_185732 Chr7 27329535 27329873 + OLO24B 335 0.7902 (1548/1959) 1 Intact * Os_TE_185713 Chr7 27321007 27321006 + SPMLIKE 10989 0.0005 (1/2067) 0 * * Os_TE_185682 Chr7 27294496 27272489 - RIRE2_LTR 11306 0.3184 (917/2880) 1 Intact * Os_TE_185541 Chr7 27196806 27196805 - COPIA2-LTR_OS 6433 0.0006 (1/1814) 0 * * Os_TE_185538 Chr7 27196326 27196327 - ENSPM6_OS 9815 0.2058 (369/1793) 0 * Os_TE_185537 Os_TE_185537 Chr7 27196324 27196323 + ENSPM6_OS 9815 0.2071 (372/1796) 0 * Os_TE_185538 Os_TE_185536 Chr7 27195857 27195856 + UNIQUE 158 0.4102 (1212/2955) 0 * * Os_TE_185535 Chr7 27195681 27195682 - MuDR4_OS 7610 0.3904 (1118/2864) 0 * * Os_TE_185515 Chr7 27184745 27184744 - MuDR3_OS 8604 0.0073 (21/2866) 0 * * Os_TE_185505 Chr7 27178693 27178694 + TRUNCATOR 2918 0.1236 (238/1925) 0 * * Os_TE_185503 Chr7 27178537 27178202 + ORSgTEMT00100531 325 0.5524 (1064/1926) 1 Intact Os_TE_185501 Os_TE_185501 Chr7 27178199 27178536 + ORSgTEMT00101651 321 0.5514 (1067/1935) 1 Intact Os_TE_185503 Os_TE_185487 Chr7 27169328 27169327 - SZ-5LTR 1223 0.0005 (1/1872) 0 * * Os_TE_185480 Chr7 27168228 27168227 + TWIF 586 0.0046 (9/1959) 0 * * Os_TE_185476 Chr7 27165810 27165811 + MERMITE18B 1306 0.0003 (1/2991) 0 * * Os_TE_185472 Chr7 27152712 27152713 + GYPSY-A_LTR 8951 0.0018 (3/1635) 0 * * Os_TE_185467 Chr7 27150259 27150260 - ORSgTETN00200001 10994 0.0272 (44/1616) 0 * Os_TE_185466 Os_TE_185466 Chr7 27150257 27150256 + SPMLIKE 10989 0.0255 (41/1611) 0 * Os_TE_185467 Os_TE_185457 Chr7 27141184 27141185 + ORSiTETNOOT00147 3619 0.3184 (440/1382) 0 * Os_TE_185456 Os_TE_185456 Chr7 27141177 27141176 - ORSiTETNOOT00147 3619 0.2864 (573/2001) 0 * Os_TE_185457 Os_TE_185455 Chr7 27141099 27140871 + STOWAWAY44_OS 240 0.7761 (1449/1867) 1 Intact * Os_TE_185453 Chr7 27140879 27140880 - ORSgTETNOOT00361 249 0.0006 (1/1600) 0 * * Os_TE_185452 Chr7 27140869 27141099 - STOWAWAY44_OS 240 0.8084 (1595/1973) 1 Intact * Os_TE_185450 Chr7 27140692 27140691 + ORSgTEMT05200196 285 0.0006 (1/1643) 0 * * Os_TE_185447 Chr7 27140142 27140284 + ORSiTEMT03300001 145 0.5603 (1617/2886) 1 Intact * Os_TE_185446 Chr7 27140104 27140105 - CASTAWAY 364 0.0012 (3/2428) 0 * * Os_TE_185430 Chr7 27132810 27132809 + CACTA-B 1103 0.0628 (104/1656) 0 * * Os_TE_185429 Chr7 27132212 27132213 + ORSgTEMT01602637 232 0.0574 (100/1742) 0 * Os_TE_185428 Os_TE_185428 Chr7 27132205 27132204 - ORSgTEMT01602190 228 0.0354 (105/2964) 0 * Os_TE_185429 Os_TE_185426 Chr7 27126522 27126521 + STOWAWAY9_OS 235 0.0304 (87/2858) 0 * Os_TE_185425 Os_TE_185425 Chr7 27126521 27126522 + ORSgTEMT01400031 216 0.0245 (72/2940) 0 * Os_TE_185426 Os_TE_185422 Chr7 27126074 27126073 - MuDR3_OS 8604 0.4229 (1224/2894) 0 * * Os_TE_185414 Chr7 27124153 27124306 - ORSgTEMT01701882 154 0.6787 (1618/2384) 1 Intact * Os_TE_185412 Chr7 27122213 27122214 - ORSiTERT00100062 5674 0.0003 (1/2953) 0 * * Os_TE_185398 Chr7 27118861 27118860 - ORSgTETNOOT02166 197 0.0019 (3/1616) 0 * * Os_TE_185384 Chr7 27108950 27108951 - STOWAWAY13_OS 251 0.3813 (657/1723) 0 * Os_TE_185383 Os_TE_185383 Chr7 27108949 27108948 + STOWAWAY13_OS 251 0.3794 (654/1724) 0 * Os_TE_185384 Os_TE_185361 Chr7 27095414 27095413 - TYPEM 227 0.2134 (635/2975) 0 * * Os_TE_185359 Chr7 27094486 27094487 - SZ-36LTR 5825 0.0003 (1/2975) 0 * * Os_TE_185341 Chr7 27076861 27076860 - ORSgTERT00200846 5739 0.0003 (1/2996) 0 * * Os_TE_185337 Chr7 27075191 27075190 - SC-8_LTR 4951 0.0010 (3/2986) 0 * * Os_TE_185303 Chr7 27057328 27057329 + ORSiTERTOOT00296 5553 0.0003 (1/2992) 0 * Os_TE_185302 Os_TE_185302 Chr7 27057324 27057323 - SC-3_LTR 5748 0.0003 (1/2984) 0 * Os_TE_185303 Os_TE_185293 Chr7 27048718 27048719 - ORSgTEMT01602152 236 0.4623 (1337/2892) 0 * * Os_TE_185292 Chr7 27048662 27048661 - FOCUS 257 0.0013 (4/2995) 0 * * Os_TE_185288 Chr7 27048402 27048403 + RETRO2_LTR 12874 0.2361 (702/2973) 0 * * Os_TE_185276 Chr7 27047006 27047007 + COPI2_LTR 4733 0.0007 (2/2784) 0 * * Os_TE_185256 Chr7 27042250 27042251 + ID-2 308 0.0017 (5/2995) 0 * * Os_TE_185253 Chr7 27036802 27036801 - ORSgTEMT02400246 177 0.0294 (87/2964) 0 * Os_TE_185252 Os_TE_185252 Chr7 27036800 27036801 - TYPEM 227 0.0302 (89/2951) 0 * Os_TE_185253 Os_TE_185249 Chr7 27035172 27035173 - SZ-22_LTR 4403 0.0003 (1/2962) 0 * * Os_TE_185244 Chr7 27033771 27033772 + ORSiTERTOOT00296 5553 0.0027 (8/2986) 0 * Os_TE_185243 Os_TE_185243 Chr7 27033767 27033766 - SC-3_LTR 5748 0.0027 (8/2990) 0 * Os_TE_185244 Os_TE_185242 Chr7 27032356 27032355 - RETROSAT5_LTR 13878 0.0003 (1/2978) 0 * * Os_TE_185228 Chr7 27027389 27027390 + TWIFB1 3737 0.0003 (1/2933) 0 * * Os_TE_185226 Chr7 27025758 27025759 - NDNA1TNA_OS 334 0.0493 (147/2979) 0 * * Os_TE_185209 Chr7 27017527 27017526 - TYPEH 309 0.0013 (4/2978) 0 * Os_TE_185208 Os_TE_185208 Chr7 27017526 27017527 - ORSgTEMT01900024 348 0.0017 (5/2983) 0 * Os_TE_185209 Os_TE_185182 Chr7 27004732 27004733 + ORSiTERTOOT00366 5449 0.0187 (56/2992) 0 * Os_TE_185181 Os_TE_185181 Chr7 27004728 27004727 - ORSiTERTOOT00366 5449 0.0191 (57/2990) 0 * Os_TE_185182 Os_TE_185178 Chr7 27002798 27002797 - SC-3_LTR 5748 0.0010 (3/2998) 0 * * Os_TE_185170 Chr7 26989049 26989048 - SZ-54_LTR 5203 0.0004 (1/2756) 0 * * Os_TE_185155 Chr7 26975006 26975005 + RIREX_LTR 8828 0.0003 (1/2998) 0 * * Os_TE_185130 Chr7 26967938 26967939 - INDITTO 263 0.0185 (55/2967) 0 * Os_TE_185129 Os_TE_185129 Chr7 26967936 26967935 + INDITTO 263 0.0179 (53/2969) 0 * Os_TE_185130 Os_TE_185128 Chr7 26967826 26967825 + STOWAWAY51_OS 246 0.1029 (307/2983) 0 * Os_TE_185127 Os_TE_185127 Chr7 26967820 26967821 - STOWAWAY51_OS 246 0.1007 (300/2980) 0 * Os_TE_185128 Os_TE_185092 Chr7 26943558 26943559 - RIREX_LTR 8828 0.0007 (2/2952) 0 * Os_TE_185091 Os_TE_185091 Chr7 26943554 26943553 + RIREX_LTR 8828 0.0007 (2/2839) 0 * Os_TE_185092 Os_TE_185086 Chr7 26942512 26942513 + INDITTO 263 0.0261 (78/2991) 0 * * Os_TE_185068 Chr7 26934023 26934022 + RIREX_LTR 8828 0.0003 (1/2996) 0 * * Os_TE_185062 Chr7 26933250 26933491 + ORSgTETNOOT00054 239 0.8800 (2633/2992) 1 Intact * Os_TE_185040 Chr7 26929966 26929967 + COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_185039 Os_TE_185039 Chr7 26929962 26929961 - COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_185040 Os_TE_185032 Chr7 26929274 26929275 - ORSgTETNOOT00053 263 0.4523 (1338/2958) 0 * Os_TE_185031 Os_TE_185031 Chr7 26929272 26929271 + ORSgTETNOOT00221 261 0.4449 (1316/2958) 0 * Os_TE_185032 Os_TE_185029 Chr7 26929110 26924325 + MDR2 6967 0.1526 (402/2635) 1 Intact Os_TE_185027 Os_TE_185027 Chr7 26924325 26929110 + MDR2 6967 0.1349 (402/2981) 1 Intact Os_TE_185029 Os_TE_185024 Chr7 26922635 26922634 + STOWAWAY51_OS 246 0.0787 (233/2961) 0 * * Os_TE_185021 Chr7 26921870 26921871 + RIREX_LTR 8828 0.0003 (1/2990) 0 * Os_TE_185020 Os_TE_185020 Chr7 26921866 26921865 - RIREX_LTR 8828 0.0003 (1/2990) 0 * Os_TE_185021 Os_TE_185008 Chr7 26920290 26920291 + COPIA2-LTR_OS 6433 0.0017 (5/2988) 0 * Os_TE_185007 Os_TE_185007 Chr7 26920286 26920285 - COPIA2-LTR_OS 6433 0.0020 (6/2992) 0 * Os_TE_185008 Os_TE_184993 Chr7 26915143 26915142 + ORSgTETNOOT00908 242 0.0003 (1/2996) 0 * * Os_TE_184989 Chr7 26913456 26913457 - OSTE24 683 0.0003 (1/2991) 0 * * Os_TE_184985 Chr7 26910697 26910698 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_184984 Os_TE_184984 Chr7 26910693 26910692 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_184985 Os_TE_184983 Chr7 26909951 26909952 - ORSgTETNOOT02417 265 0.0027 (8/2991) 0 * Os_TE_184982 Os_TE_184982 Chr7 26909949 26909948 - INDITTO 263 0.0030 (9/2988) 0 * Os_TE_184983 Os_TE_184981 Chr7 26909753 26909752 + CACTA-B 1103 0.0262 (78/2980) 0 * Os_TE_184980 Os_TE_184980 Chr7 26909749 26909750 + ORSgTETN00200005 1121 0.0252 (75/2980) 0 * Os_TE_184981 Os_TE_184957 Chr7 26889645 26889646 + ORSgTEMT00501629 149 0.0003 (1/2986) 0 * * Os_TE_184948 Chr7 26886120 26886119 + ORSgTEMT01601591 242 0.0003 (1/2987) 0 * * Os_TE_184946 Chr7 26886064 26886065 + AMYLTP 383 0.0122 (36/2949) 0 * Os_TE_184945 Os_TE_184945 Chr7 26886056 26886055 - AMYLTP 383 0.0121 (36/2978) 0 * Os_TE_184946 Os_TE_184929 Chr7 26880210 26880209 + COPI2_LTR 4733 0.6263 (1840/2938) 0 * * Os_TE_184927 Chr7 26879726 26879727 - ORSgTEMT02000040 196 0.8656 (2532/2925) 0 * * Os_TE_184913 Chr7 26877861 26877862 - GYPSY-A_LTR 8951 0.1995 (588/2948) 0 * * Os_TE_184885 Chr7 26862102 26873391 + RIRE2_LTR 11306 0.1341 (401/2990) 1 Intact * Os_TE_184862 Chr7 26854230 26854231 - COPIA2-LTR_OS 6433 0.0037 (11/2999) 0 * * Os_TE_184857 Chr7 26852673 26852451 - ORSgTEMT01600223 220 0.3353 (999/2979) 1 Intact Os_TE_184856 Os_TE_184856 Chr7 26852451 26852681 - ORSgTEMT01600223 220 0.3346 (998/2983) 1 Intact Os_TE_184857 Os_TE_184852 Chr7 26851645 26851796 - ORSgTEMT00400001 152 0.3372 (994/2948) 1 Intact * Os_TE_184850 Chr7 26850421 26850420 - ORSgTEMT01602467 227 0.6685 (1962/2935) 0 * * Os_TE_184849 Chr7 26846368 26846367 - STOWAWAY21_OS 243 0.0015 (2/1292) 0 * * Os_TE_184847 Chr7 26844582 26844336 + STOWAWAY13_OS 251 0.3741 (955/2553) 1 Intact * Os_TE_184841 Chr7 26843632 26837554 - ORSiTERT00100062 5674 0.1346 (393/2920) 1 Intact Os_TE_184839 Os_TE_184839 Chr7 26837554 26843632 + OSTONOR1_LTR 6440 0.1516 (448/2955) 1 Intact Os_TE_184841 Os_TE_184837 Chr7 26834998 26834755 - ORSgTEMT01400019 216 0.3318 (988/2978) 1 Intact * Os_TE_184834 Chr7 26834659 26834658 + OLO24 345 0.6757 (1986/2939) 0 * * Os_TE_184817 Chr7 26826248 26826249 + ORSiTEMT00300001 383 0.1543 (460/2981) 0 * Os_TE_184816 Os_TE_184816 Chr7 26826245 26826244 + ORSgTEMT00300122 416 0.1553 (461/2968) 0 * Os_TE_184817 Os_TE_184815 Chr7 26826026 26825878 - ORSgTEMT00500110 151 0.3338 (997/2987) 1 Intact Os_TE_184814 Os_TE_184814 Chr7 26825878 26826023 + ORSgTEMT00501366 147 0.3371 (1007/2987) 1 Intact Os_TE_184815 Os_TE_184801 Chr7 26815966 26815622 + OLO24 345 0.3324 (991/2981) 1 Intact Os_TE_184799 Os_TE_184799 Chr7 26815622 26815966 - OLO24 345 0.3324 (991/2981) 1 Intact Os_TE_184801 Os_TE_184797 Chr7 26815228 26815227 + ORSgTETNOOT01275 140 0.6581 (1811/2752) 0 * * Os_TE_184790 Chr7 26814093 26814092 + STOWAWAY21_OS 243 0.0048 (5/1040) 0 * * Os_TE_184787 Chr7 26813930 26814078 + ORSgTEMT00501035 149 0.3367 (1009/2997) 1 Intact * Os_TE_184759 Chr7 26801999 26801998 - MPING 430 0.0004 (1/2364) 0 * * Os_TE_184758 Chr7 26801658 26801657 - COPIA2-LTR_OS 6433 0.0003 (1/2908) 0 * * Os_TE_184746 Chr7 26792970 26792971 + OSTONOR1_LTR 6440 0.0010 (1/1035) 0 * Os_TE_184745 Os_TE_184745 Chr7 26792966 26792965 - OSTONOR1_LTR 6440 0.0010 (1/1038) 0 * Os_TE_184746 Os_TE_184740 Chr7 26792502 26792501 + ORSgTEMT01700299 212 0.6667 (1968/2952) 0 * * Os_TE_184734 Chr7 26791993 26791992 - MuDR4_OS 7610 0.0022 (5/2280) 0 * * Os_TE_184732 Chr7 26790869 26790868 - ORSgTEMT00500600 149 0.6165 (1614/2618) 0 * * Os_TE_184721 Chr7 26789542 26789543 + RETRO2_LTR 12874 0.1958 (577/2947) 0 * Os_TE_184720 Os_TE_184720 Chr7 26789538 26789537 - RETRO2_LTR 12874 0.2001 (595/2973) 0 * Os_TE_184721 Os_TE_184718 Chr7 26788754 26787284 + MERMITE 1401 0.3360 (993/2955) 1 Intact * Os_TE_184701 Chr7 26781933 26781932 - COPIA2-LTR_OS 6433 0.0007 (2/2993) 0 * * Os_TE_184692 Chr7 26779310 26779311 - ORSgTERT00201216 11284 0.1291 (133/1030) 0 * Os_TE_184691 Os_TE_184691 Chr7 26779306 26779305 - RIRE2_LTR 11306 0.1301 (134/1030) 0 * Os_TE_184692 Os_TE_184678 Chr7 26777241 26777394 - STOWAWAY50_OS 174 0.3673 (1045/2845) 1 Intact * Os_TE_184675 Chr7 26774835 26774537 - ORSgTEMT01900023 299 0.3293 (956/2903) 1 Intact * Os_TE_184672 Chr7 26774411 26774505 - ZM13-2_OS 108 0.4161 (1026/2466) 1 Intact * Os_TE_184659 Chr7 26766682 26766683 + RIRE1_LTR 8322 0.1178 (137/1163) 0 * * Os_TE_184658 Chr7 26766156 26766157 + ORSgTEMT00101173 343 0.6663 (1971/2958) 0 * * Os_TE_184657 Chr7 26766089 26765942 - ORSgTEMT00502293 151 0.3399 (1008/2966) 1 Intact * Os_TE_184654 Chr7 26764548 26765929 + OSTE33 1012 0.3399 (1012/2977) 1 Intact * Os_TE_184651 Chr7 26764016 26763863 - ORSgTEMT01700468 154 0.3388 (1012/2987) 1 Intact * Os_TE_184641 Chr7 26762581 26762580 - YOUREN 286 0.6628 (1944/2933) 0 * * Os_TE_184640 Chr7 26762539 26762303 - ORSgTEMT00900760 239 0.7592 (1050/1383) 1 Intact * Os_TE_184632 Chr7 26761520 26761275 - ORSgTEMT01400023 211 0.4898 (1007/2056) 1 Intact * Os_TE_184627 Chr7 26760124 26759877 + ORSgTEMT00901844 250 0.3453 (1019/2951) 1 Intact Os_TE_184626 Os_TE_184626 Chr7 26759875 26760122 - ORSgTEMT00900099 250 0.3455 (1025/2967) 1 Intact Os_TE_184627 Os_TE_184625 Chr7 26759758 26759757 + ORSgTEMT00500651 144 0.6559 (1895/2889) 0 * * Os_TE_184620 Chr7 26757704 26757705 - MPING 430 0.0006 (1/1607) 0 * Os_TE_184619 Os_TE_184619 Chr7 26757702 26757701 + MPING 430 0.0007 (2/2987) 0 * Os_TE_184620 Os_TE_184615 Chr7 26754136 26753893 + ORSgTETNOOT01242 259 0.3515 (924/2629) 1 Intact * Os_TE_184607 Chr7 26752413 26752412 + EXPLORER 210 0.6644 (1940/2920) 0 * * Os_TE_184606 Chr7 26751628 26751627 + ORSgTEMT01601525 239 0.0068 (7/1025) 0 * * Os_TE_184601 Chr7 26751073 26751074 + COPIA2-LTR_OS 6433 0.0030 (3/1010) 0 * Os_TE_184600 Os_TE_184600 Chr7 26751069 26751068 - COPIA2-LTR_OS 6433 0.0020 (2/1004) 0 * Os_TE_184601 Os_TE_184596 Chr7 26750403 26750068 - CASTAWAY 364 0.4842 (1014/2094) 1 Intact Os_TE_184594 Os_TE_184594 Chr7 26750064 26750403 + CASTAWAY 364 0.3880 (1034/2665) 1 Intact Os_TE_184596 Os_TE_184589 Chr7 26747899 26747898 + ORSgTEMT01000006 225 0.0048 (5/1036) 0 * * Os_TE_184585 Chr7 26746357 26746502 + ORSgTEMT00501665 148 0.3442 (1022/2969) 1 Intact * Os_TE_184583 Chr7 26746223 26746224 + ORSgTEMT00500010 153 0.6689 (1974/2951) 0 * * Os_TE_184582 Chr7 26746006 26746007 - INDITTO 263 0.0013 (4/2985) 0 * Os_TE_184581 Os_TE_184581 Chr7 26746004 26746003 + INDITTO 263 0.0013 (4/2987) 0 * Os_TE_184582 Os_TE_184527 Chr7 26720254 26720255 + ORSiTERTOOT00329 5144 0.0357 (107/2994) 0 * Os_TE_184526 Os_TE_184526 Chr7 26720247 26720246 - ORSiTERTOOT00329 5144 0.0374 (112/2996) 0 * Os_TE_184527 Os_TE_184506 Chr7 26709791 26709792 - NDNA1TNA_OS 334 0.1516 (454/2994) 0 * Os_TE_184505 Os_TE_184505 Chr7 26709790 26709789 + NDNA1TNA_OS 334 0.1513 (452/2988) 0 * Os_TE_184506 Os_TE_184487 Chr7 26698908 26698771 - TOS17LTR 138 0.0784 (234/2983) 1 Intact * Os_TE_184486 Chr7 26694795 26694932 + TOS17LTR 138 0.0778 (232/2982) 1 Intact * Os_TE_184413 Chr7 26661146 26661147 - SC-3_LTR 5748 0.0003 (1/2994) 0 * Os_TE_184412 Os_TE_184412 Chr7 26661142 26661141 + ORSiTERTOOT00296 5553 0.0003 (1/2994) 0 * Os_TE_184413 Os_TE_184403 Chr7 26658396 26658397 + RETROSAT3_LTR 11537 0.7356 (1380/1876) -1 * Os_TE_184402 Os_TE_184402 Chr7 26658392 26658391 - RETROSAT2LTRA 3112 0.7484 (1645/2198) -1 * Os_TE_184403 Os_TE_184383 Chr7 26637399 26637400 + ORSgTEMT00300093 396 0.1672 (498/2978) 0 * * Os_TE_184370 Chr7 26627611 26627612 - RIREX_LTR 8828 0.0299 (89/2972) 0 * Os_TE_184369 Os_TE_184369 Chr7 26627607 26627606 + RIREX_LTR 8828 0.0306 (91/2977) 0 * Os_TE_184370 Os_TE_184368 Chr7 26627547 26627548 - COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_184367 Os_TE_184367 Chr7 26627543 26627542 + COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_184368 Os_TE_184351 Chr7 26622861 26622862 + RIREX_LTR 8828 0.0003 (1/2980) 0 * Os_TE_184350 Os_TE_184350 Chr7 26622857 26622856 - RIREX_LTR 8828 0.0003 (1/2983) 0 * Os_TE_184351 Os_TE_184348 Chr7 26622778 26622777 + RIRE2_LTR 11306 0.0007 (2/2985) 0 * * Os_TE_184324 Chr7 26609357 26609358 - COPIA2-LTR_OS 6433 0.0003 (1/2909) 0 * Os_TE_184323 Os_TE_184323 Chr7 26609353 26609352 + COPIA2-LTR_OS 6433 0.0003 (1/2900) 0 * Os_TE_184324 Os_TE_184322 Chr7 26608984 26608985 - INDITTO 263 0.0887 (261/2943) 0 * * Os_TE_184283 Chr7 26579034 26567745 - RIRE2_LTR 11306 0.0918 (275/2997) 1 Intact * Os_TE_184267 Chr7 26563866 26563867 - MPING 430 0.0003 (1/2985) 0 * Os_TE_184266 Os_TE_184266 Chr7 26563864 26563863 + MPING 430 0.0003 (1/2969) 0 * Os_TE_184267 Os_TE_184265 Chr7 26563810 26563811 + COPIA2-LTR_OS 6433 0.0023 (7/2993) 0 * Os_TE_184264 Os_TE_184264 Chr7 26563806 26563805 - COPIA2-LTR_OS 6433 0.0023 (7/2992) 0 * Os_TE_184265 Os_TE_184232 Chr7 26546125 26546126 + COPI2_LTR 4733 0.0051 (15/2915) 0 * Os_TE_184231 Os_TE_184231 Chr7 26546121 26546120 - COPI2_LTR 4733 0.0021 (6/2908) 0 * Os_TE_184232 Os_TE_184219 Chr7 26541799 26541798 + ORSgTEMT00300063 413 0.2039 (594/2913) 0 * * Os_TE_184209 Chr7 26539743 26539965 + ORSgTEMT02400041 225 0.1391 (403/2898) 1 Intact * Os_TE_184207 Chr7 26534783 26534784 + ORSiTERTOOT00333 4719 0.0007 (2/2926) 0 * Os_TE_184206 Os_TE_184206 Chr7 26534780 26534779 - ORSiTERTOOT00333 4719 0.0007 (2/2946) 0 * Os_TE_184207 Os_TE_184186 Chr7 26517553 26517554 + ORSgTEMT00600160 361 0.0012 (3/2456) 0 * * Os_TE_184150 Chr7 26512504 26512505 - SZ-35LTR 3853 0.0010 (3/2991) 0 * * Os_TE_184144 Chr7 26510607 26510606 - SC-3_LTR 5748 0.0010 (3/2981) 0 * * Os_TE_184089 Chr7 26487369 26487370 + ORSgTETNOOT01531 255 0.0003 (1/2959) 0 * Os_TE_184088 Os_TE_184088 Chr7 26487365 26487364 + ORSgTETNOOT01686 252 0.0003 (1/2960) 0 * Os_TE_184089 Os_TE_184087 Chr7 26486800 26486801 - INDITTO 263 0.0021 (6/2924) 0 * Os_TE_184086 Os_TE_184086 Chr7 26486798 26486797 - ORSgTETNOOT00053 263 0.0023 (6/2587) 0 * Os_TE_184087 Os_TE_184083 Chr7 26485937 26485938 + OSTE20 496 0.0665 (197/2961) 0 * Os_TE_184082 Os_TE_184082 Chr7 26485933 26485932 + OSTE20 496 0.0662 (196/2962) 0 * Os_TE_184083 Os_TE_184080 Chr7 26485567 26485568 - STOWAWAY51_OS 246 0.0003 (1/2973) 0 * * Os_TE_184067 Chr7 26464404 26464405 + TWIFB1 3737 0.0003 (1/2933) 0 * * Os_TE_184051 Chr7 26459995 26459994 - TYPEM 227 0.0027 (8/2978) 0 * Os_TE_184050 Os_TE_184050 Chr7 26459994 26459995 - ORSgTEMT02400246 177 0.0027 (8/2966) 0 * Os_TE_184051 Os_TE_184048 Chr7 26456886 26456887 - MPING 430 0.0010 (3/2943) 0 * Os_TE_184047 Os_TE_184047 Chr7 26456884 26456883 + MPING 430 0.0011 (3/2773) 0 * Os_TE_184048 Os_TE_184045 Chr7 26455524 26454298 - RETRO2_LTR 12874 0.1212 (353/2913) 1 Solo_LTR Os_TE_184044 Os_TE_184044 Chr7 26454298 26455524 + SZLTR 1249 0.1181 (344/2914) 1 Intact Os_TE_184045 Os_TE_184017 Chr7 26447890 26447889 + COPI2_LTR 4733 0.0007 (2/2852) 0 * * Os_TE_184011 Chr7 26447004 26447005 - ORSiTERT00100062 5674 0.1875 (559/2981) 0 * Os_TE_184010 Os_TE_184010 Chr7 26447000 26446999 - ORSiTERT00100062 5674 0.1843 (548/2974) 0 * Os_TE_184011 Os_TE_184009 Chr7 26446981 26446980 + NDNA1TNA_OS 334 0.0011 (3/2840) 0 * Os_TE_184008 Os_TE_184008 Chr7 26446979 26446980 - NDNA1TNA_OS 334 0.0010 (3/2981) 0 * Os_TE_184009 Os_TE_184006 Chr7 26445400 26438612 - MuDR3_OS 8604 0.3177 (947/2981) 1 Intact Os_TE_184001 Os_TE_184001 Chr7 26438609 26445392 - MuDR3_OS 8604 0.3121 (925/2964) 1 Intact Os_TE_184006 Os_TE_183980 Chr7 26426807 26426808 + SC-8_LTR 4951 0.0003 (1/2993) 0 * Os_TE_183979 Os_TE_183979 Chr7 26426803 26426802 - SC-8_LTR 4951 0.0003 (1/2987) 0 * Os_TE_183980 Os_TE_183971 Chr7 26421163 26421164 + ORSiTERTOOT00296 5553 0.0003 (1/2980) 0 * Os_TE_183970 Os_TE_183970 Chr7 26421159 26421158 - SC-3_LTR 5748 0.0003 (1/2983) 0 * Os_TE_183971 Os_TE_183966 Chr7 26418900 26418901 - SC-3_LTR 5748 0.0121 (36/2978) 0 * Os_TE_183965 Os_TE_183965 Chr7 26418896 26418895 + ORSiTERTOOT00296 5553 0.0131 (39/2985) 0 * Os_TE_183966 Os_TE_183964 Chr7 26418849 26418850 + ORSiTERTOOT00296 5553 0.0003 (1/2988) 0 * Os_TE_183963 Os_TE_183963 Chr7 26418845 26418844 - SC-3_LTR 5748 0.0003 (1/2993) 0 * Os_TE_183964 Os_TE_183822 Chr7 26375309 26375310 + MPING 430 0.0004 (1/2789) 0 * Os_TE_183821 Os_TE_183821 Chr7 26375307 26375306 - MPING 430 0.0003 (1/2896) 0 * Os_TE_183822 Os_TE_183812 Chr7 26374353 26374354 + DS-RICE4N 715 0.1867 (554/2967) 0 * Os_TE_183810 Os_TE_183810 Chr7 26374339 26374338 + ORSiTETN00100011 676 0.0008 (2/2464) 0 * Os_TE_183812 Os_TE_183798 Chr7 26371575 26371576 - MERMITEJ 1498 0.0474 (136/2871) 0 * Os_TE_183797 Os_TE_183797 Chr7 26371566 26371565 + MERMITED 1572 0.0454 (129/2844) 0 * Os_TE_183798 Os_TE_183760 Chr7 26361145 26361146 - COPIA2-LTR_OS 6433 0.0003 (1/2970) 0 * * Os_TE_183751 Chr7 26359849 26359848 + ORSgTETNOOT00012 241 0.0013 (4/2967) 0 * * Os_TE_183747 Chr7 26358611 26358610 + TRUNCATOR 2918 0.0717 (214/2984) 0 * * Os_TE_183744 Chr7 26357747 26357748 + COPIA2-LTR_OS 6433 0.0003 (1/2984) 0 * Os_TE_183743 Os_TE_183743 Chr7 26357743 26357742 - COPIA2-LTR_OS 6433 0.0003 (1/2980) 0 * Os_TE_183744 Os_TE_183738 Chr7 26354380 26353207 - OSTE15 1168 0.1054 (315/2990) 1 Intact Os_TE_183737 Os_TE_183737 Chr7 26353204 26354378 - OSTE15 1168 0.1058 (317/2997) 1 Intact Os_TE_183738 Os_TE_183736 Chr7 26352697 26352698 + F569 228 0.0432 (129/2987) 0 * Os_TE_183735 Os_TE_183735 Chr7 26352695 26352694 - F569 228 0.0450 (134/2981) 0 * Os_TE_183736 Os_TE_183712 Chr7 26348479 26348478 - MDR2 6967 0.0452 (132/2921) 0 * * Os_TE_183701 Chr7 26343561 26343562 - COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_183700 Os_TE_183700 Chr7 26343557 26343556 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_183701 Os_TE_183662 Chr7 26325581 26325580 + BUHUI 375 0.0013 (4/2996) 0 * * Os_TE_183642 Chr7 26317689 26317690 - RETRO2_LTR 12874 0.0099 (29/2925) 0 * * Os_TE_183635 Chr7 26316728 26316727 - HELITRON7_OS 10153 0.5978 (1770/2961) 0 * Os_TE_183634 Os_TE_183634 Chr7 26316722 26316723 + HELITRON7_OS 10153 0.6054 (1807/2985) 0 * Os_TE_183635 Os_TE_183630 Chr7 26312440 26312023 + ORSgTEMT00300064 397 0.3163 (943/2981) 1 Intact Os_TE_183628 Os_TE_183628 Chr7 26312016 26312433 + ORSgTEMT00300069 394 0.3131 (935/2986) 1 Intact Os_TE_183630 Os_TE_183622 Chr7 26310032 26310031 + ORSgTEMT01602580 283 0.0007 (2/2998) 0 * * Os_TE_183619 Chr7 26308962 26308963 + ORSiTERTOOT00226 792 0.0003 (1/2998) 0 * Os_TE_183618 Os_TE_183618 Chr7 26308958 26308957 - SZ-22_LTR 4403 0.0003 (1/2998) 0 * Os_TE_183619 Os_TE_183617 Chr7 26308900 26308899 - OSLINE1-2 7128 0.0177 (53/2995) 0 * * Os_TE_183594 Chr7 26296924 26296923 + ORSgTEMT01701265 147 0.0004 (1/2795) 0 * * Os_TE_183585 Chr7 26296297 26296298 - ORSiTETNOOT00216 3569 0.0061 (18/2963) 0 * Os_TE_183584 Os_TE_183584 Chr7 26296290 26296289 + TWIFBIG 3567 0.0057 (17/2958) 0 * Os_TE_183585 Os_TE_183546 Chr7 26279258 26279259 + ORSgTETNOOT00908 242 0.0007 (2/2984) 0 * * Os_TE_183545 Chr7 26279091 26279090 - STOWAWAY51_OS 246 0.0010 (3/2984) 0 * * Os_TE_183528 Chr7 26275134 26275408 - TREP215 239 0.6952 (1768/2543) -1 Intact * Os_TE_183499 Chr7 26263355 26263356 - ORSiTERTOOT00402 2660 0.0003 (1/2985) 0 * Os_TE_183498 Os_TE_183498 Chr7 26263351 26263350 + ORSiTERTOOT00402 2660 0.0003 (1/2989) 0 * Os_TE_183499 Os_TE_183433 Chr7 26236361 26236362 - SC-3_LTR 5748 0.0003 (1/2983) 0 * Os_TE_183432 Os_TE_183432 Chr7 26236357 26236356 + ORSiTERTOOT00296 5553 0.0003 (1/2981) 0 * Os_TE_183433 Os_TE_183420 Chr7 26228392 26228393 + COPIA2-LTR_OS 6433 0.0053 (14/2658) 0 * Os_TE_183419 Os_TE_183419 Chr7 26228388 26228387 - COPIA2-LTR_OS 6433 0.0050 (15/2993) 0 * Os_TE_183420 Os_TE_183407 Chr7 26226607 26226606 + RIREX_LTR 8828 0.0017 (5/2992) 0 * * Os_TE_183361 Chr7 26220302 26220303 - ORSiTEMT02200001 210 0.0013 (4/2965) 0 * * Os_TE_183345 Chr7 26212597 26212489 + SINE1OS 127 0.3559 (1057/2970) 1 Intact * Os_TE_183299 Chr7 26187713 26186549 - SZLTR 1249 0.3800 (1080/2842) 1 Intact * Os_TE_183293 Chr7 26174986 26176154 + SZLTR 1249 0.3409 (987/2895) 1 Intact * Os_TE_183282 Chr7 26168218 26168219 + TWIFBIG 3567 0.0021 (5/2363) 0 * Os_TE_183281 Os_TE_183281 Chr7 26168211 26168210 - ORSiTETNOOT00216 3569 0.0160 (38/2376) 0 * Os_TE_183282 Os_TE_183268 Chr7 26153627 26153628 + COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_183267 Os_TE_183267 Chr7 26153623 26153622 - COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_183268 Os_TE_183260 Chr7 26149189 26149188 - TREP215 239 0.0013 (4/2988) 0 * * Os_TE_183239 Chr7 26142826 26142827 - RIREX_LTR 8828 0.0007 (2/2992) 0 * Os_TE_183238 Os_TE_183238 Chr7 26142822 26142821 + RIREX_LTR 8828 0.0007 (2/2991) 0 * Os_TE_183239 Os_TE_183181 Chr7 26112867 26124748 - TRUNCATOR 2918 0.3526 (1043/2958) 1 Intact * Os_TE_183118 Chr7 26089074 26089075 + SPMLIKE 10989 0.0017 (5/2989) 0 * * Os_TE_183110 Chr7 26088053 26088052 - STOWAWAY51_OS 246 0.0481 (139/2890) 0 * Os_TE_183109 Os_TE_183109 Chr7 26088047 26088048 + STOWAWAY51_OS 246 0.0573 (167/2912) 0 * Os_TE_183110 Os_TE_183080 Chr7 26083077 26083076 - ORSgTEMT01600520 239 0.0003 (1/2947) 0 * * Os_TE_183052 Chr7 26078952 26078953 + INDITTO 263 0.2799 (820/2930) 0 * * Os_TE_183022 Chr7 26073179 26073180 + COPI2_LTR 4733 0.0003 (1/2996) 0 * * Os_TE_183021 Chr7 26072919 26072920 - COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * * Os_TE_183011 Chr7 26068922 26069158 + ORSgTEMT01602626 237 0.7328 (1890/2579) 1 Intact * Os_TE_183010 Chr7 26068590 26067492 + CACTA-H 1152 0.7591 (2102/2769) 1 Intact * Os_TE_182980 Chr7 26062252 26062253 - COPIA2-LTR_OS 6433 0.0004 (1/2564) 0 * * Os_TE_182970 Chr7 26059609 26059610 + MPING 430 0.0005 (1/2189) 0 * * Os_TE_182968 Chr7 26059520 26059519 + ORSgTEMT00700017 386 0.0023 (5/2185) 0 * * Os_TE_182967 Chr7 26059513 26059514 - ORSgTEMT00700002 381 0.0018 (4/2187) 0 * Os_TE_182966 Os_TE_182966 Chr7 26059512 26059511 + MUDRN5_OS 374 0.0023 (5/2186) 0 * Os_TE_182967 Os_TE_182964 Chr7 26058042 26058043 + COPI2_LTR 4733 0.0005 (1/2166) 0 * Os_TE_182963 Os_TE_182963 Chr7 26058038 26058037 - COPI2_LTR 4733 0.0005 (1/2170) 0 * Os_TE_182964 Os_TE_182949 Chr7 26048280 26048279 + ORSgTEMT00500610 153 0.0005 (1/2175) 0 * * Os_TE_182948 Chr7 26048051 26048050 + CLOUD-3 550 0.0011 (3/2659) 0 * * Os_TE_182945 Chr7 26045043 26044895 - ORSiTEMT03300001 145 0.7229 (2144/2966) 1 Intact Os_TE_182942 Os_TE_182942 Chr7 26044892 26045033 + ORSiTEMT03300001 145 0.7223 (2148/2974) 1 Intact Os_TE_182945 Os_TE_182939 Chr7 26042444 26042445 - F524 291 0.2452 (721/2941) 0 * * Os_TE_182936 Chr7 26041006 26041005 - ORSgTEMT00101174 225 0.0482 (144/2985) 0 * Os_TE_182935 Os_TE_182935 Chr7 26041005 26041006 - STOWAWAY10_OS 259 0.0366 (108/2951) 0 * Os_TE_182936 Os_TE_182929 Chr7 26034034 26033487 - MUDROS1 4932 0.4261 (1070/2511) 1 Intact Os_TE_182928 Os_TE_182928 Chr7 26033487 26034034 - CLOUD-3 550 0.4271 (1073/2512) 1 Intact Os_TE_182929 Os_TE_182924 Chr7 26032133 26032134 - COPI2_LTR 4733 0.2315 (661/2855) 0 * * Os_TE_182922 Chr7 26031684 26031685 - ORSgTEMT02400179 221 0.0369 (109/2954) 0 * * Os_TE_182921 Chr7 26030378 26030140 + TREP215 239 0.3451 (1015/2941) 1 Intact Os_TE_182920 Os_TE_182920 Chr7 26030140 26030378 + ORSgTEMT01602188 240 0.3435 (1004/2923) 1 Intact Os_TE_182921 Os_TE_182913 Chr7 26029470 26029471 + CACTA-I 1124 0.0499 (149/2987) 0 * * Os_TE_182912 Chr7 26028941 26028942 + STOWAWAY47_OS 148 0.0003 (1/2985) 0 * * Os_TE_182910 Chr7 26026248 26026247 - ORSiTEMT01300001 950 0.0005 (1/1972) 0 * * Os_TE_182904 Chr7 26023260 26023261 - SC-3_LTR 5748 0.0007 (2/2991) 0 * Os_TE_182903 Os_TE_182903 Chr7 26023256 26023255 + ORSiTERTOOT00296 5553 0.0007 (2/2993) 0 * Os_TE_182904 Os_TE_182898 Chr7 26019000 26019001 + ORSiTERTOOT00226 792 0.0003 (1/2990) 0 * * Os_TE_182887 Chr7 26012938 26012939 - MuDR4_OS 7610 0.0124 (33/2670) 0 * * Os_TE_182885 Chr7 26012784 26012785 + INDITTO 263 0.0111 (32/2879) 0 * Os_TE_182884 Os_TE_182884 Chr7 26012782 26012781 - INDITTO 263 0.0111 (32/2885) 0 * Os_TE_182885 Os_TE_182877 Chr7 26011716 26011715 + ORSgTEMT01601122 212 0.0029 (5/1727) 0 * * Os_TE_182866 Chr7 26009166 26008405 + MUDRN1_OS 764 0.3742 (1112/2972) 1 Intact Os_TE_182864 Os_TE_182864 Chr7 26008405 26009166 - MUDRN1_OS 764 0.3636 (1077/2962) 1 Intact Os_TE_182866 Os_TE_182857 Chr7 26007649 26007648 + OLO24 345 0.0010 (3/2977) 0 * * Os_TE_182850 Chr7 26003460 26003459 - ORSgTEMT00900099 250 0.0017 (5/2959) 0 * Os_TE_182849 Os_TE_182849 Chr7 26003459 26003460 - ORSgTEMT00900124 247 0.0010 (3/2970) 0 * Os_TE_182850 Os_TE_182847 Chr7 26001350 26001349 - ORSgTEMT01701882 154 0.0017 (5/2993) 0 * Os_TE_182846 Os_TE_182846 Chr7 26001347 26001348 + STOWAWAY50_OS 174 0.0017 (5/2997) 0 * Os_TE_182847 Os_TE_182828 Chr7 25996055 25996056 - HARB-1_OS 5166 0.0003 (1/2896) 0 * Os_TE_182827 Os_TE_182827 Chr7 25996053 25996052 + HARB-1_OS 5166 0.0003 (1/2985) 0 * Os_TE_182828 Os_TE_182816 Chr7 25993140 25993141 + ORSgTEMT00300063 413 0.0017 (5/2955) 0 * * Os_TE_182802 Chr7 25985648 25985649 - INDITTO 263 0.0888 (109/1227) 0 * Os_TE_182801 Os_TE_182801 Chr7 25985646 25985645 + INDITTO 263 0.0375 (112/2988) 0 * Os_TE_182802 Os_TE_182778 Chr7 25968945 25968946 + SZ-55_LTR 10318 0.0003 (1/2991) 0 * * Os_TE_182776 Chr7 25968175 25968176 - ORSgTETNOOT00908 242 0.0378 (113/2987) 0 * * Os_TE_182752 Chr7 25955315 25955316 + COPI2_LTR 4733 0.0003 (1/2999) 0 * Os_TE_182751 Os_TE_182751 Chr7 25955311 25955310 - COPI2_LTR 4733 0.0003 (1/2999) 0 * Os_TE_182752 Os_TE_182727 Chr7 25944750 25944749 + ORSgTETNOOT00908 242 0.0013 (4/2994) 0 * * Os_TE_182719 Chr7 25939779 25939780 - MPING 430 0.0003 (1/2998) 0 * Os_TE_182718 Os_TE_182718 Chr7 25939777 25939776 + MPING 430 0.0003 (1/2998) 0 * Os_TE_182719 Os_TE_182712 Chr7 25931640 25931641 + TWIFB1 3737 0.0003 (1/2927) 0 * * Os_TE_182701 Chr7 25926309 25926310 - COPIA2-LTR_OS 6433 0.0003 (1/2978) 0 * Os_TE_182700 Os_TE_182700 Chr7 25926305 25926304 + COPIA2-LTR_OS 6433 0.0003 (1/2971) 0 * Os_TE_182701 Os_TE_182684 Chr7 25924181 25924180 + AMYLTP 383 0.0019 (4/2145) 0 * Os_TE_182683 Os_TE_182683 Chr7 25924171 25924172 - AMYLTP 383 0.0025 (7/2785) 0 * Os_TE_182684 Os_TE_182670 Chr7 25921528 25921529 - ORSiTERTOOT00402 2660 0.0017 (5/2975) 0 * Os_TE_182669 Os_TE_182669 Chr7 25921524 25921523 + ORSiTERTOOT00402 2660 0.0017 (5/2976) 0 * Os_TE_182670 Os_TE_182664 Chr7 25917662 25917661 + AMYLTP 383 0.5272 (1550/2940) 0 * * Os_TE_182661 Chr7 25914254 25914253 - ORSiTEMT01300001 950 0.0003 (1/2992) 0 * * Os_TE_182635 Chr7 25904509 25904510 - ORSgTETNOOT00754 253 0.0003 (1/2990) 0 * Os_TE_182634 Os_TE_182634 Chr7 25904504 25904503 - ORSgTETNOOT00477 252 0.0003 (1/2989) 0 * Os_TE_182635 Os_TE_182627 Chr7 25901115 25901116 - AMYLTP 383 0.0017 (5/2983) 0 * Os_TE_182626 Os_TE_182626 Chr7 25901107 25901106 + AMYLTP 383 0.0013 (4/2976) 0 * Os_TE_182627 Os_TE_182606 Chr7 25887926 25887927 + COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * * Os_TE_182604 Chr7 25887206 25887207 + OSTE33 1012 0.0017 (5/2975) 0 * Os_TE_182603 Os_TE_182603 Chr7 25887197 25887196 + OSTE33 1012 0.0013 (4/2964) 0 * Os_TE_182604 Os_TE_182588 Chr7 25876253 25876254 + MPING 430 0.0034 (10/2985) 0 * Os_TE_182587 Os_TE_182587 Chr7 25876251 25876250 - MPING 430 0.0037 (11/2983) 0 * Os_TE_182588 Os_TE_182583 Chr7 25875578 25875218 + ORSgTEMT00600272 361 0.3504 (1043/2977) 1 Intact Os_TE_182580 Os_TE_182580 Chr7 25875215 25875578 - ORSgTEMT00600524 364 0.3520 (1049/2980) 1 Intact Os_TE_182583 Os_TE_182558 Chr7 25865839 25865578 + ORSgTETNOOT00221 261 0.3540 (1017/2873) 1 Intact * Os_TE_182556 Chr7 25863978 25863979 - STOWAWAY51_OS 246 0.0003 (1/2988) 0 * * Os_TE_182554 Chr7 25863819 25863820 - ORSgTEMT00100272 356 0.5683 (1668/2935) 0 * Os_TE_182553 Os_TE_182553 Chr7 25863818 25863817 - NDNA1TNA_OS 334 0.5775 (1721/2980) 0 * Os_TE_182554 Os_TE_182535 Chr7 25856711 25856712 + ORSiTERTOOT00074 4935 0.0003 (1/2980) 0 * * Os_TE_182527 Chr7 25852271 25852272 - RIREX_LTR 8828 0.0003 (1/2988) 0 * * Os_TE_182515 Chr7 25846812 25846813 + INDITTO 263 0.2762 (824/2983) 0 * Os_TE_182514 Os_TE_182514 Chr7 25846810 25846809 - INDITTO 263 0.2744 (818/2981) 0 * Os_TE_182515 Os_TE_182409 Chr7 25790412 25790413 - MuDR4_OS 7610 0.6472 (1913/2956) 0 * Os_TE_182408 Os_TE_182408 Chr7 25790406 25790405 - MuDR4_OS 7610 0.6185 (1717/2776) 0 * Os_TE_182409 Os_TE_182347 Chr7 25770618 25770619 - STOLAB 312 0.0007 (2/2981) 0 * * Os_TE_182288 Chr7 25743956 25743955 + ORSgTEMT02400245 225 0.0004 (1/2583) 0 * Os_TE_182287 Os_TE_182287 Chr7 25743955 25743956 - TYPEM 227 0.0004 (1/2568) 0 * Os_TE_182288 Os_TE_182284 Chr7 25742137 25742136 - ORSgTEMT01400014 209 0.8598 (2043/2376) 0 * * Os_TE_182273 Chr7 25735441 25735442 - SZ-35LTR 3853 0.0020 (6/2989) 0 * Os_TE_182272 Os_TE_182272 Chr7 25735437 25735436 + RETROSAT4_LTR 13504 0.0017 (5/2983) 0 * Os_TE_182273 Os_TE_182266 Chr7 25731889 25731888 + OSTE20 496 0.6609 (1914/2896) 0 * * Os_TE_182256 Chr7 25724104 25724105 - SZ-22_LTR 4403 0.0003 (1/2997) 0 * Os_TE_182255 Os_TE_182255 Chr7 25724100 25724099 + SZ-22_LTR 4403 0.0003 (1/2995) 0 * Os_TE_182256 Os_TE_182235 Chr7 25715927 25715928 - COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_182234 Os_TE_182234 Chr7 25715923 25715922 + COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_182235 Os_TE_182218 Chr7 25714280 25714281 - SZ-55_LTR 10318 0.0003 (1/2961) 0 * Os_TE_182217 Os_TE_182217 Chr7 25714276 25714275 + SZ-55_LTR 10318 0.0003 (1/2966) 0 * Os_TE_182218 Os_TE_182212 Chr7 25711972 25711973 + ORSgTETNOOT01834 251 0.0003 (1/2978) 0 * Os_TE_182211 Os_TE_182211 Chr7 25711970 25711969 + ORSgTETNOOT01834 251 0.0003 (1/2971) 0 * Os_TE_182212 Os_TE_182193 Chr7 25704848 25704847 + ORSgTEMT00100694 349 0.6278 (1879/2993) 0 * * Os_TE_182137 Chr7 25691888 25691889 - COPIA2-LTR_OS 6433 0.0007 (2/2988) 0 * Os_TE_182136 Os_TE_182136 Chr7 25691884 25691883 + COPIA2-LTR_OS 6433 0.0007 (2/2997) 0 * Os_TE_182137 Os_TE_182124 Chr7 25682527 25682108 - ORSgTEMT00300160 419 0.3472 (1032/2972) 1 Intact * Os_TE_182100 Chr7 25670073 25670074 - SZ-35LTR 3853 0.2535 (758/2990) 0 * * Os_TE_182096 Chr7 25668509 25668510 - NDNA2TNA_OS 346 0.6574 (1959/2980) 0 * Os_TE_182095 Os_TE_182095 Chr7 25668507 25668506 + NDNA2TNA_OS 346 0.6628 (1968/2969) 0 * Os_TE_182096 Os_TE_182075 Chr7 25661115 25661116 + JOUZHENA 607 0.0017 (5/2993) 0 * Os_TE_182074 Os_TE_182074 Chr7 25661108 25661107 - JOUZHENA 607 0.0017 (5/2992) 0 * Os_TE_182075 Os_TE_182043 Chr7 25640129 25640130 - COPIA2-LTR_OS 6433 0.0003 (1/2983) 0 * * Os_TE_182040 Chr7 25633231 25633230 - COPIA2-LTR_OS 6433 0.0003 (1/2981) 0 * * Os_TE_181994 Chr7 25622522 25622523 - INDITTO 263 0.1178 (339/2878) 0 * * Os_TE_181992 Chr7 25622487 25622488 + KIDDOC 275 0.0007 (2/2801) 0 * Os_TE_181991 Os_TE_181991 Chr7 25622483 25622482 - KIDDOC 275 0.0007 (2/2756) 0 * Os_TE_181992 Os_TE_181989 Chr7 25621592 25621593 + ORSgTEMT00500201 140 0.0003 (1/2925) 0 * * Os_TE_181979 Chr7 25616155 25616154 + COPIA2-LTR_OS 6433 0.0013 (4/2992) 0 * * Os_TE_181931 Chr7 25592777 25592778 - COPI2_LTR 4733 0.0003 (1/2991) 0 * * Os_TE_181926 Chr7 25589151 25589150 + STOWAWAY51_OS 246 0.0003 (1/2945) 0 * Os_TE_181925 Os_TE_181925 Chr7 25589145 25589146 + ORSgTEMT01601591 242 0.0003 (1/2962) 0 * Os_TE_181926 Os_TE_181904 Chr7 25580517 25580518 + OSTONOR1_LTR 6440 0.0003 (1/2981) 0 * Os_TE_181903 Os_TE_181903 Chr7 25580513 25580512 - ORSiTERT00100062 5674 0.0003 (1/2976) 0 * Os_TE_181904 Os_TE_181898 Chr7 25579519 25573099 - COPIA2-LTR_OS 6433 0.3499 (1048/2995) 1 Intact Os_TE_181894 Os_TE_181894 Chr7 25573099 25579519 + COPIA2-LTR_OS 6433 0.3478 (1041/2993) 1 Intact Os_TE_181898 Os_TE_181892 Chr7 25570584 25570585 + ORSiTERTOOT00296 5553 0.0003 (1/2994) 0 * Os_TE_181891 Os_TE_181891 Chr7 25570580 25570579 - SC-3_LTR 5748 0.0003 (1/2992) 0 * Os_TE_181892 Os_TE_181820 Chr7 25532625 25532626 + SC-8_LTR 4951 0.0007 (2/2993) 0 * Os_TE_181819 Os_TE_181819 Chr7 25532621 25532620 - SC-8_LTR 4951 0.0007 (2/2992) 0 * Os_TE_181820 Os_TE_181779 Chr7 25516931 25516932 - COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_181778 Os_TE_181778 Chr7 25516927 25516926 + COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_181779 Os_TE_181774 Chr7 25513815 25513814 + RIREX_LTR 8828 0.0003 (1/2975) 0 * * Os_TE_181770 Chr7 25512983 25512984 - OSTONOR1_LTR 6440 0.0003 (1/2982) 0 * Os_TE_181769 Os_TE_181769 Chr7 25512979 25512978 + OSTONOR1_LTR 6440 0.0003 (1/2873) 0 * Os_TE_181770 Os_TE_181721 Chr7 25494216 25494217 + ORSiTERTOOT00381 4988 0.0003 (1/2992) 0 * Os_TE_181720 Os_TE_181720 Chr7 25494212 25494211 - SC-8_LTR 4951 0.0003 (1/2994) 0 * Os_TE_181721 Os_TE_181701 Chr7 25479584 25479583 + ORSiTERTOOT00074 4935 0.0006 (1/1683) 0 * * Os_TE_181696 Chr7 25477404 25477405 + INDITTO 263 0.0003 (1/2992) 0 * Os_TE_181695 Os_TE_181695 Chr7 25477402 25477401 - INDITTO 263 0.0003 (1/2993) 0 * Os_TE_181696 Os_TE_181694 Chr7 25477276 25477277 + STOWAWAY44_OS 240 0.0003 (1/2982) 0 * * Os_TE_181679 Chr7 25473701 25473702 - TRUNCATOR2_LTR 2904 0.0003 (1/2974) 0 * * Os_TE_181676 Chr7 25473204 25473205 + COPIA2-LTR_OS 6433 0.0003 (1/2954) 0 * Os_TE_181675 Os_TE_181675 Chr7 25473200 25473199 - COPIA2-LTR_OS 6433 0.0003 (1/2983) 0 * Os_TE_181676 Os_TE_181673 Chr7 25473082 25472847 + ORSgTETNOOT00908 242 0.2399 (717/2989) 1 Intact Os_TE_181672 Os_TE_181672 Chr7 25472848 25473078 + ORSgTETNOOT01219 231 0.2416 (721/2984) 1 Intact Os_TE_181673 Os_TE_181665 Chr7 25472098 25472099 + SPMLIKE 10989 0.0003 (1/2925) 0 * Os_TE_181664 Os_TE_181664 Chr7 25472096 25472095 - ORSgTETN00200001 10994 0.0003 (1/2961) 0 * Os_TE_181665 Os_TE_181601 Chr7 25436389 25436390 - COPIA2-LTR_OS 6433 0.0010 (3/2958) 0 * Os_TE_181600 Os_TE_181600 Chr7 25436385 25436384 + COPIA2-LTR_OS 6433 0.0010 (3/2964) 0 * Os_TE_181601 Os_TE_181597 Chr7 25435524 25435525 - MuDR2_OS 6770 0.0081 (24/2959) 0 * * Os_TE_181587 Chr7 25425126 25425127 - RETROSAT2LTRA 3112 0.0824 (245/2973) 0 * * Os_TE_181583 Chr7 25423509 25423508 - COPIA2-LTR_OS 6433 0.0010 (1/1037) 0 * * Os_TE_181576 Chr7 25417329 25422450 - RETRO1_LTR 8314 0.1495 (440/2943) 1 Intact * Os_TE_181505 Chr7 25397493 25397494 - ORSgTETNOOT00754 253 0.0003 (1/2988) 0 * Os_TE_181504 Os_TE_181504 Chr7 25397491 25397490 + ORSgTETNOOT01834 251 0.0003 (1/2986) 0 * Os_TE_181505 Os_TE_181477 Chr7 25384482 25384483 + ORSiTERTOOT00296 5553 0.0003 (1/2992) 0 * Os_TE_181476 Os_TE_181476 Chr7 25384478 25384477 - SC-3_LTR 5748 0.0003 (1/2987) 0 * Os_TE_181477 Os_TE_181474 Chr7 25384004 25384005 - SC-8_LTR 4951 0.0003 (1/2997) 0 * Os_TE_181473 Os_TE_181473 Chr7 25384000 25383999 + SC-8_LTR 4951 0.0003 (1/2994) 0 * Os_TE_181474 Os_TE_181470 Chr7 25381672 25381671 - STOWAWAY51_OS 246 0.0024 (7/2886) 0 * Os_TE_181469 Os_TE_181469 Chr7 25381666 25381667 + STOWAWAY51_OS 246 0.0024 (7/2883) 0 * Os_TE_181470 Os_TE_181445 Chr7 25365802 25365803 - SZ-22_LTR 4403 0.0003 (1/2928) 0 * Os_TE_181444 Os_TE_181444 Chr7 25365798 25365797 + ORSiTERTOOT00226 792 0.0003 (1/2953) 0 * Os_TE_181445 Os_TE_181416 Chr7 25351328 25351327 + ORSgTEMT01601591 242 0.0003 (1/2966) 0 * Os_TE_181415 Os_TE_181415 Chr7 25351321 25351322 + STOWAWAY51_OS 246 0.0003 (1/2979) 0 * Os_TE_181416 Os_TE_181369 Chr7 25331247 25329960 - OSTE15 1168 0.0562 (167/2974) 1 Intact Os_TE_181367 Os_TE_181367 Chr7 25329960 25331243 + OSTE15 1168 0.0574 (170/2962) 1 Intact Os_TE_181369 Os_TE_181352 Chr7 25323129 25323130 + ORSiTERTOOT00226 792 0.0003 (1/2993) 0 * Os_TE_181351 Os_TE_181351 Chr7 25323125 25323124 - SZ-22_LTR 4403 0.0003 (1/2995) 0 * Os_TE_181352 Os_TE_181334 Chr7 25320424 25320425 - OLO24 345 0.0003 (1/2996) 0 * Os_TE_181333 Os_TE_181333 Chr7 25320422 25320421 + OLO24 345 0.0003 (1/2995) 0 * Os_TE_181334 Os_TE_181332 Chr7 25319827 25319828 + INDITTO 263 0.1116 (333/2983) 0 * Os_TE_181331 Os_TE_181331 Chr7 25319825 25319824 - INDITTO 263 0.1149 (343/2985) 0 * Os_TE_181332 Os_TE_181321 Chr7 25313389 25313388 + ORSgTETNOOT00908 242 0.0020 (6/2996) 0 * * Os_TE_181320 Chr7 25313072 25312810 + INDITTO 263 0.0260 (78/2997) 1 Intact Os_TE_181318 Os_TE_181318 Chr7 25312810 25313072 - INDITTO 263 0.0261 (78/2993) 1 Intact Os_TE_181320 Os_TE_181308 Chr7 25310344 25310345 + OSTONOR1_LTR 6440 0.0003 (1/2975) 0 * * Os_TE_181303 Chr7 25308327 25308326 + ORSgTEMT01601591 242 0.0007 (2/2974) 0 * Os_TE_181302 Os_TE_181302 Chr7 25308325 25308326 + STOWAWAY51_OS 246 0.0007 (2/2987) 0 * Os_TE_181303 Os_TE_181301 Chr7 25307737 25307738 - ORSgTEMT01602413 239 0.0007 (2/2955) 0 * * Os_TE_181255 Chr7 25293641 25293640 + RIREX_LTR 8828 0.0003 (1/2979) 0 * * Os_TE_181202 Chr7 25263555 25263556 + RIREX_LTR 8828 0.0017 (5/2979) 0 * * Os_TE_181183 Chr7 25258571 25258570 - STOWAWAY51_OS 246 0.0003 (1/2996) 0 * Os_TE_181182 Os_TE_181182 Chr7 25258565 25258566 + STOWAWAY51_OS 246 0.0003 (1/2996) 0 * Os_TE_181183 Os_TE_181169 Chr7 25252496 25252497 - COPI2_LTR 4733 0.0097 (29/2987) 0 * Os_TE_181168 Os_TE_181168 Chr7 25252492 25252491 + COPI2_LTR 4733 0.0064 (19/2978) 0 * Os_TE_181169 Os_TE_181160 Chr7 25247879 25247878 + ORSgTERT00200875 5747 0.0003 (1/2980) 0 * * Os_TE_181147 Chr7 25237726 25237727 + COPI2_LTR 4733 0.0007 (2/2989) 0 * Os_TE_181146 Os_TE_181146 Chr7 25237722 25237721 - COPI2_LTR 4733 0.0010 (3/2987) 0 * Os_TE_181147 Os_TE_181142 Chr7 25236137 25236136 - STOWAWAY51_OS 246 0.0003 (1/2990) 0 * Os_TE_181141 Os_TE_181141 Chr7 25236131 25236132 + STOWAWAY51_OS 246 0.0003 (1/2987) 0 * Os_TE_181142 Os_TE_181095 Chr7 25227873 25227874 + CASTAWAY 364 0.5719 (1710/2990) 0 * * Os_TE_180932 Chr7 25188461 25188462 - COPIA2-LTR_OS 6433 0.0004 (1/2507) 0 * Os_TE_180931 Os_TE_180931 Chr7 25188457 25188456 + COPIA2-LTR_OS 6433 0.0004 (1/2506) 0 * Os_TE_180932 Os_TE_180930 Chr7 25188265 25188266 + COPI2_LTR 4733 0.0004 (1/2503) 0 * * Os_TE_180904 Chr7 25182709 25169766 + RETRO1_LTR 8314 0.8775 (781/890) 1 Intact * Os_TE_180863 Chr7 25157378 25157379 + EnSpm-13_OS 11171 0.0026 (3/1140) 0 * Os_TE_180862 Os_TE_180862 Chr7 25157376 25157375 - EnSpm-13_OS 11171 0.0026 (3/1144) 0 * Os_TE_180863 Os_TE_180813 Chr7 25134089 25133846 - TAMI2 254 0.8435 (2501/2965) 1 Intact * Os_TE_180796 Chr7 25127915 25127916 - ORSgTEMT02400246 177 0.0918 (271/2953) 0 * * Os_TE_180792 Chr7 25126463 25126462 + ORSgTEMT01602181 239 0.0011 (3/2741) 0 * * Os_TE_180790 Chr7 25125883 25125884 - ORSgTEMT01601432 239 0.0018 (4/2168) -1 * * Os_TE_180760 Chr7 25113024 25112816 - ORSgTETNOOT00593 233 0.3298 (986/2990) 1 Intact * Os_TE_180759 Chr7 25111793 25111794 - MPING 430 0.0020 (6/2993) 0 * * Os_TE_180751 Chr7 25108967 25108968 - COPI2_LTR 4733 0.0578 (172/2975) 0 * Os_TE_180750 Os_TE_180750 Chr7 25108963 25108962 + COPI2_LTR 4733 0.0555 (165/2975) 0 * Os_TE_180751 Os_TE_180746 Chr7 25107001 25107002 - COPI2_LTR 4733 0.0003 (1/2964) 0 * Os_TE_180745 Os_TE_180745 Chr7 25106997 25106996 + COPI2_LTR 4733 0.0003 (1/2968) 0 * Os_TE_180746 Os_TE_180740 Chr7 25101825 25101826 - SC-8_LTR 4951 0.0003 (1/2989) 0 * Os_TE_180739 Os_TE_180739 Chr7 25101821 25101820 + ORSiTERTOOT00381 4988 0.0003 (1/2986) 0 * Os_TE_180740 Os_TE_180717 Chr7 25083070 25095966 - RETRO1_LTR 8314 0.6837 (603/882) 1 Intact * Os_TE_180699 Chr7 25074462 25074463 + STOWAWAY50_OS 174 0.0012 (1/864) 0 * * Os_TE_180698 Chr7 25073541 25073540 + MuDR3_OS 8604 0.1870 (235/1257) 0 * * Os_TE_180691 Chr7 25071204 25071205 + SZ-55_LTR 10318 0.0012 (1/869) 0 * * Os_TE_180654 Chr7 25053338 25053339 + MERMITEA 1710 0.7236 (2152/2974) 0 * * Os_TE_180607 Chr7 25023169 25036221 - RETRO2_LTR 12874 0.3233 (963/2979) 1 Intact * Os_TE_180539 Chr7 24978887 24978886 + ORSgTEMT02500011 193 0.0012 (3/2545) 0 * * Os_TE_180511 Chr7 24969956 24973541 - ORSiTETNOOT00200 3563 0.3176 (900/2834) 1 Intact * Os_TE_180504 Chr7 24968324 24968323 - ORSgTEMT02400246 177 0.0017 (5/2974) 0 * * Os_TE_180492 Chr7 24955871 24955870 + ORSgTEMT01601934 207 0.0004 (1/2787) -1 * * Os_TE_180467 Chr7 24949706 24949707 - NDNA1TNA_OS 334 0.0027 (8/2988) 0 * Os_TE_180466 Os_TE_180466 Chr7 24949704 24949703 + NDNA1TNA_OS 334 0.0027 (8/2992) 0 * Os_TE_180467 Os_TE_180465 Chr7 24949527 24949528 - OSCOPIA1_LTR 4754 0.0017 (5/2963) 0 * Os_TE_180464 Os_TE_180464 Chr7 24949523 24949522 + OSCOPIA1_LTR 4754 0.0017 (5/2966) 0 * Os_TE_180465 Os_TE_180416 Chr7 24938654 24938653 - INDITTO 263 0.6622 (1958/2957) 0 * * Os_TE_180414 Chr7 24938598 24938597 + STOWAWAY51_OS 246 0.0003 (1/2976) 0 * * Os_TE_180412 Chr7 24938382 24938381 + ORSgTEMT00100531 325 0.6064 (1812/2988) 0 * * Os_TE_180405 Chr7 24937398 24937399 + MPING 430 0.0010 (3/2994) 0 * Os_TE_180404 Os_TE_180404 Chr7 24937396 24937395 - MPING 430 0.0010 (3/2993) 0 * Os_TE_180405 Os_TE_180400 Chr7 24934340 24934341 - COPIA2-LTR_OS 6433 0.0020 (6/2994) 0 * Os_TE_180399 Os_TE_180399 Chr7 24934336 24934335 + COPIA2-LTR_OS 6433 0.0013 (4/2993) 0 * Os_TE_180400 Os_TE_180383 Chr7 24928884 24928885 + ORSgTEMT01701311 142 0.0017 (5/2901) 0 * * Os_TE_180368 Chr7 24926211 24926210 - ORSgTEMT01601432 239 0.0013 (4/2991) 0 * Os_TE_180367 Os_TE_180367 Chr7 24926208 24926209 + ORSgTEMT01602181 239 0.0013 (4/2993) 0 * Os_TE_180368 Os_TE_180351 Chr7 24917699 24917698 + HARB-1_OS 5166 0.0070 (21/2990) 0 * * Os_TE_180345 Chr7 24915262 24915263 + ORSiTERTOOT00296 5553 0.0101 (30/2975) 0 * Os_TE_180344 Os_TE_180344 Chr7 24915258 24915257 - SC-3_LTR 5748 0.0101 (30/2970) 0 * Os_TE_180345 Os_TE_180337 Chr7 24908510 24908511 + TWIFBIG 3567 0.0003 (1/2993) 0 * Os_TE_180336 Os_TE_180336 Chr7 24908503 24908502 - ORSiTETNOOT00156 3648 0.0003 (1/2993) 0 * Os_TE_180337 Os_TE_180287 Chr7 24896620 24896621 - TRUNCATOR2_LTR 2904 0.0003 (1/2956) 0 * * Os_TE_180269 Chr7 24857474 24857473 + ORSgTERT00200216 776 0.0008 (2/2657) 0 * * Os_TE_180268 Chr7 24857440 24852746 + COPIA2-LTR_OS 6433 0.2338 (614/2626) 1 Intact * Os_TE_180247 Chr7 24850015 24850016 - SZ-9LTR 965 0.0576 (171/2969) 0 * Os_TE_180246 Os_TE_180246 Chr7 24850011 24850010 + SZ-9LTR 965 0.0589 (175/2972) 0 * Os_TE_180247 Os_TE_180240 Chr7 24846534 24846535 - STOWAWAY51_OS 246 0.0003 (1/2979) 0 * * Os_TE_180235 Chr7 24844861 24844860 - OSTE24 683 0.5502 (1600/2908) 0 * * Os_TE_180202 Chr7 24823430 24816157 - OSTE33 1012 0.3069 (898/2926) 1 Intact Os_TE_180199 Os_TE_180199 Chr7 24816158 24823425 - OSTE33 1012 0.3216 (954/2966) 1 Intact Os_TE_180202 Os_TE_180171 Chr7 24809838 24809839 - SZ-22_LTR 4403 0.0003 (1/2884) 0 * Os_TE_180170 Os_TE_180170 Chr7 24809834 24809833 + ORSiTERTOOT00226 792 0.0003 (1/2896) 0 * Os_TE_180171 Os_TE_180166 Chr7 24808885 24808886 + INDITTO 263 0.1195 (167/1398) 0 * Os_TE_180165 Os_TE_180165 Chr7 24808883 24808882 - INDITTO 263 0.1121 (157/1400) 0 * Os_TE_180166 Os_TE_180163 Chr7 24808654 24808171 - MuDR4_OS 7610 0.3265 (976/2989) 1 Intact * Os_TE_180138 Chr7 24801845 24801846 + COPI2_LTR 4733 0.0007 (2/2727) 0 * Os_TE_180137 Os_TE_180137 Chr7 24801841 24801840 - COPI2_LTR 4733 0.0004 (1/2715) 0 * Os_TE_180138 Os_TE_180097 Chr7 24786559 24786560 + ORSgTEMT01400031 216 0.6848 (2038/2976) 0 * * Os_TE_180095 Chr7 24783869 24783868 - TRUNCATOR 2918 0.0294 (73/2487) 0 * Os_TE_180094 Os_TE_180094 Chr7 24783868 24783869 + TRUNCATOR 2918 0.0878 (236/2687) 0 * Os_TE_180095 Os_TE_180076 Chr7 24781548 24781549 - DS-RICE2N 613 0.0031 (9/2885) 0 * Os_TE_180075 Os_TE_180075 Chr7 24781541 24781540 + DS-RICE2N 613 0.0028 (8/2895) 0 * Os_TE_180076 Os_TE_180048 Chr7 24773146 24773147 - ORSgTEMT02400246 177 0.5595 (1670/2985) 0 * * Os_TE_180047 Chr7 24773144 24773143 + ORSgTEMT02400014 229 0.6817 (2037/2988) 0 * * Os_TE_180036 Chr7 24770199 24770200 + SINE1OS 127 0.1976 (592/2996) 0 * * Os_TE_180034 Chr7 24768658 24768659 - ORSgTETN00200001 10994 0.0003 (1/2971) 0 * * Os_TE_180023 Chr7 24767218 24767217 - COPIA2-LTR_OS 6433 0.0007 (2/2914) 0 * * Os_TE_179976 Chr7 24745495 24745496 + COPI2_LTR 4733 0.0103 (30/2911) 0 * Os_TE_179975 Os_TE_179975 Chr7 24745491 24745490 - COPI2_LTR 4733 0.0117 (34/2904) 0 * Os_TE_179976 Os_TE_179956 Chr7 24736084 24731811 + SZ-48LTR 3632 0.4662 (1373/2945) 1 Intact Os_TE_179955 Os_TE_179955 Chr7 24731811 24736084 - SZ-48LTR 3632 0.4626 (1359/2938) 1 Intact Os_TE_179956 Os_TE_179951 Chr7 24730153 24730152 - COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * * Os_TE_179935 Chr7 24713024 24713025 + TNR1 237 0.5896 (1697/2878) 0 * Os_TE_179934 Os_TE_179934 Chr7 24713023 24713022 + ORSgTEMT01600421 237 0.5978 (1764/2951) 0 * Os_TE_179935 Os_TE_179931 Chr7 24711844 24711845 + ENSPM4_OS 11610 0.5679 (1589/2798) 0 * * Os_TE_179920 Chr7 24708340 24708339 + CACTA-B 1103 0.0034 (10/2947) 0 * Os_TE_179919 Os_TE_179919 Chr7 24708336 24708337 + ORSgTETN00200005 1121 0.0031 (9/2947) 0 * Os_TE_179920 Os_TE_179909 Chr7 24700100 24700101 + RIREX_LTR 8828 0.0007 (2/2984) 0 * Os_TE_179908 Os_TE_179908 Chr7 24700096 24700095 - RIREX_LTR 8828 0.0007 (2/2985) 0 * Os_TE_179909 Os_TE_179870 Chr7 24684035 24684036 + COPIA2-LTR_OS 6433 0.0007 (2/2994) 0 * Os_TE_179869 Os_TE_179869 Chr7 24684031 24684030 - COPIA2-LTR_OS 6433 0.0007 (2/2992) 0 * Os_TE_179870 Os_TE_179851 Chr7 24679146 24679147 - COPI2_LTR 4733 0.0069 (20/2907) 0 * Os_TE_179850 Os_TE_179850 Chr7 24679142 24679141 + COPI2_LTR 4733 0.0054 (16/2956) 0 * Os_TE_179851 Os_TE_179843 Chr7 24676766 24676767 + STOWAWAY44_OS 240 0.0003 (1/2985) 0 * * Os_TE_179839 Chr7 24674930 24674931 + COPIA2-LTR_OS 6433 0.0007 (2/2965) 0 * * Os_TE_179814 Chr7 24652762 24652763 + RETRO2A_LTR 12895 0.0378 (113/2986) 0 * * Os_TE_179811 Chr7 24652370 24652371 - OSTE15 1168 0.0061 (18/2970) 0 * Os_TE_179810 Os_TE_179810 Chr7 24652366 24652365 + OSMU5 4881 0.0061 (18/2960) 0 * Os_TE_179811 Os_TE_179766 Chr7 24645541 24645542 + ORSiCMCM00100019 2717 0.0003 (1/2978) 0 * Os_TE_179765 Os_TE_179765 Chr7 24645537 24645536 - TRUNCATOR2_LTR 2904 0.0003 (1/2978) 0 * Os_TE_179766 Os_TE_179729 Chr7 24632862 24632861 + F770 284 0.0004 (1/2857) 0 * * Os_TE_179699 Chr7 24620248 24620249 + RIREX_LTR 8828 0.0003 (1/2993) 0 * Os_TE_179698 Os_TE_179698 Chr7 24620244 24620243 - RIREX_LTR 8828 0.0003 (1/2996) 0 * Os_TE_179699 Os_TE_179680 Chr7 24611848 24611847 - COPIA2-LTR_OS 6433 0.0007 (2/2995) 0 * * Os_TE_179652 Chr7 24590717 24590716 - COPIA2-LTR_OS 6433 0.0003 (1/2974) 0 * * Os_TE_179639 Chr7 24588279 24588280 + RIREX_LTR 8828 0.0003 (1/2994) 0 * Os_TE_179638 Os_TE_179638 Chr7 24588275 24588274 - RIREX_LTR 8828 0.0003 (1/2999) 0 * Os_TE_179639 Os_TE_179609 Chr7 24575327 24575328 - ORSgTEMT01602082 215 0.2107 (629/2985) 0 * * Os_TE_179608 Chr7 24574694 24574337 + ORSgTEMT03000028 382 0.7905 (2340/2960) 1 Intact Os_TE_179602 Os_TE_179602 Chr7 24574305 24574681 + ORSgTEMT03000028 382 0.7877 (2330/2958) 1 Intact Os_TE_179608 Os_TE_179595 Chr7 24571670 24571671 + STOWAWAY46_OS 154 0.2342 (644/2750) 0 * * Os_TE_179561 Chr7 24561753 24563676 + ORSgTEMT01601018 231 0.2895 (865/2988) 1 Intact * Os_TE_179541 Chr7 24554883 24554882 - ORSgTEMT01601432 239 0.1847 (540/2923) 0 * Os_TE_179540 Os_TE_179540 Chr7 24554877 24554878 + ORSgTEMT01602181 239 0.1816 (526/2896) 0 * Os_TE_179541 Os_TE_179527 Chr7 24538001 24538000 + RETROSAT4_LTR 13504 0.0042 (12/2867) 0 * * Os_TE_179512 Chr7 24533971 24533970 + MERMITEB 1610 0.7169 (2122/2960) 0 * * Os_TE_179510 Chr7 24533734 24533735 + RIREX_LTR 8828 0.2011 (600/2984) 0 * Os_TE_179509 Os_TE_179509 Chr7 24533730 24533729 - RIREX_LTR 8828 0.2003 (598/2985) 0 * Os_TE_179510 Os_TE_179497 Chr7 24531778 24531777 - GYPSY-A_LTR 8951 0.0014 (4/2860) 0 * * Os_TE_179493 Chr7 24530722 24530723 - DS-RICE2N 613 0.0010 (3/2984) 0 * Os_TE_179492 Os_TE_179492 Chr7 24530715 24530714 + DS-RICE4N 715 0.0010 (3/2986) 0 * Os_TE_179493 Os_TE_179484 Chr7 24528094 24528233 + ORSgTEMT00500852 140 0.2959 (871/2944) 1 Intact * Os_TE_179482 Chr7 24527353 24527354 - ORSgTEMT01601493 303 0.7086 (2086/2944) 0 * * Os_TE_179474 Chr7 24526718 24526719 + ORSgTEMT04600039 283 0.7204 (2141/2972) 0 * Os_TE_179473 Os_TE_179473 Chr7 24526717 24526716 + ID-4 284 0.6814 (1820/2671) 0 * Os_TE_179474 Os_TE_179471 Chr7 24526287 24526286 + ORSgTEMT01601122 212 0.6305 (1452/2303) 0 * Os_TE_179470 Os_TE_179470 Chr7 24526284 24526285 + ORSgTEMT01601122 212 0.6987 (1915/2741) 0 * Os_TE_179471 Os_TE_179465 Chr7 24525612 24525407 + ORSgTEMT02400110 218 0.3056 (852/2788) 1 Intact Os_TE_179462 Os_TE_179462 Chr7 24525405 24525608 - ORSgTEMT02400064 212 0.3191 (864/2708) 1 Intact Os_TE_179465 Os_TE_179451 Chr7 24518508 24518509 + ORSgTEMT01601036 240 0.7128 (2122/2977) 0 * * Os_TE_179450 Chr7 24517964 24517965 + DS-RICE4N 715 0.2025 (597/2948) 0 * Os_TE_179449 Os_TE_179449 Chr7 24517957 24517956 - DS-RICE2N 613 0.2021 (602/2979) 0 * Os_TE_179450 Os_TE_179448 Chr7 24517912 24517913 + ORSgTEMT03000039 377 0.7156 (2126/2971) 0 * Os_TE_179447 Os_TE_179447 Chr7 24517903 24517902 - ORSgTEMT03000007 372 0.7157 (2132/2979) 0 * Os_TE_179448 Os_TE_179440 Chr7 24515796 24515795 + ORSgTEMT01602181 239 0.0050 (15/2993) 0 * * Os_TE_179432 Chr7 24514080 24514081 - ORSgTEMT01602082 215 0.1371 (142/1036) 0 * * Os_TE_179421 Chr7 24509549 24509410 + ORSgTEMT00500201 140 0.2986 (882/2954) 1 Intact Os_TE_179417 Os_TE_179417 Chr7 24509407 24509546 - ORSgTETNOOT00998 140 0.2919 (875/2998) 1 Intact Os_TE_179421 Os_TE_179415 Chr7 24509105 24508753 - ORSgTEMT00600228 364 0.2933 (875/2983) 1 Intact Os_TE_179411 Os_TE_179411 Chr7 24508752 24509105 - CASTAWAY 364 0.2905 (870/2995) 1 Intact Os_TE_179415 Os_TE_179406 Chr7 24505254 24505255 + TWIF 586 0.0003 (1/2950) 0 * * Os_TE_179393 Chr7 24502710 24502711 + NDNA1TNA_OS 334 0.0010 (3/2989) 0 * Os_TE_179392 Os_TE_179392 Chr7 24502708 24502707 - NDNA1TNA_OS 334 0.0010 (3/2992) 0 * Os_TE_179393 Os_TE_179386 Chr7 24501284 24501437 - ORSgTEMT01700659 156 0.6747 (1999/2963) 1 Intact * Os_TE_179384 Chr7 24500826 24499343 - MERMITE18C 1473 0.6700 (1996/2979) 1 Intact Os_TE_179382 Os_TE_179382 Chr7 24499341 24500823 + MERMITE18C 1473 0.6832 (2019/2955) 1 Intact Os_TE_179384 Os_TE_179380 Chr7 24497927 24497709 - COWARD-3 221 0.6736 (1923/2855) 1 Intact * Os_TE_179377 Chr7 24494635 24494636 + STOWAWAY45_OS 266 0.0017 (5/2990) 0 * * Os_TE_179373 Chr7 24492297 24492298 - OSTONOR1_LTR 6440 0.0010 (3/2957) 0 * Os_TE_179372 Os_TE_179372 Chr7 24492293 24492292 + OSTONOR1_LTR 6440 0.0015 (3/2035) 0 * Os_TE_179373 Os_TE_179370 Chr7 24490013 24490014 + TRUNCATOR 2918 0.0678 (179/2642) 0 * * Os_TE_179369 Chr7 24489791 24489792 + ORSgTEMT01601122 212 0.3058 (863/2822) 0 * * Os_TE_179367 Chr7 24489685 24489686 + RIREX_LTR 8828 0.0010 (3/2957) 0 * Os_TE_179366 Os_TE_179366 Chr7 24489681 24489680 - RIREX_LTR 8828 0.0010 (3/2985) 0 * Os_TE_179367 Os_TE_179357 Chr7 24486557 24486891 + MUDRN4_OS 332 0.6514 (1865/2863) 1 Intact * Os_TE_179356 Chr7 24486502 24485455 + MERMITEB 1610 0.6491 (1809/2787) 1 Intact * Os_TE_179354 Chr7 24485466 24485467 - STOWAWAY14_OS 258 0.0014 (3/2100) 0 * * Os_TE_179353 Chr7 24485457 24486500 + MERMITE18B 1306 0.6681 (1993/2983) 1 Intact * Os_TE_179350 Chr7 24483198 24483199 - CACTA-M 1129 0.2137 (639/2990) 0 * Os_TE_179349 Os_TE_179349 Chr7 24483196 24483195 + CACTA-M 1129 0.2122 (633/2983) 0 * Os_TE_179350 Os_TE_179346 Chr7 24482776 24482777 - ORSgTEMT00100315 323 0.3453 (1033/2992) 0 * Os_TE_179345 Os_TE_179345 Chr7 24482770 24482769 - ORSgTEMT00101242 323 0.3443 (1030/2992) 0 * Os_TE_179346 Os_TE_179343 Chr7 24481000 24479190 + MERMITE18E 1528 0.6656 (1963/2949) 1 Intact * Os_TE_179338 Chr7 24478755 24478756 - CLOUD-4 520 0.3381 (1002/2964) 0 * * Os_TE_179328 Chr7 24476728 24476982 - STOWAWAY41_OS 264 0.6586 (1896/2879) -1 Intact * Os_TE_179327 Chr7 24476712 24476713 + STOWAWAY9_OS 235 0.0003 (1/2858) -1 * * Os_TE_179322 Chr7 24475595 24475596 + SPMLIKE 10989 0.0003 (1/2945) 0 * * Os_TE_179315 Chr7 24474183 24475473 + XIKE 594 0.6817 (1992/2922) 1 Intact * Os_TE_179314 Chr7 24473611 24473612 + MPING 430 0.0003 (1/2995) 0 * Os_TE_179313 Os_TE_179313 Chr7 24473609 24473608 - MPING 430 0.0003 (1/2994) 0 * Os_TE_179314 Os_TE_179312 Chr7 24471984 24471983 - SZ-48LTR 3632 0.0017 (5/2969) 0 * * Os_TE_179311 Chr7 24471099 24471100 - TYPEH 309 0.0005 (1/2040) 0 * * Os_TE_179308 Chr7 24468248 24468249 + RETROSAT4_LTR 13504 0.0077 (23/2998) 0 * * Os_TE_179304 Chr7 24466979 24466980 - ORSgTERT00201216 11284 0.0401 (119/2964) 0 * * Os_TE_179282 Chr7 24458465 24458466 - SC-3_LTR 5748 0.0003 (1/2993) 0 * * Os_TE_179271 Chr7 24445022 24445021 + RIREX_LTR 8828 0.0010 (3/2989) 0 * * Os_TE_179267 Chr7 24443721 24443722 - STOWAWAY51_OS 246 0.0003 (1/2997) 0 * * Os_TE_179256 Chr7 24437944 24437343 + TWIF 586 0.0701 (207/2955) 1 Intact Os_TE_179255 Os_TE_179255 Chr7 24437341 24437944 - ORSiTETNOOT00200 3563 0.0734 (218/2969) 1 Intact Os_TE_179256 Os_TE_179219 Chr7 24405809 24405808 - SC-3_LTR 5748 0.0013 (4/2973) 0 * * Os_TE_179216 Chr7 24404495 24404496 - SC-3_LTR 5748 0.0003 (1/2991) 0 * Os_TE_179215 Os_TE_179215 Chr7 24404491 24404490 + ORSiTERTOOT00296 5553 0.0003 (1/2988) 0 * Os_TE_179216 Os_TE_179192 Chr7 24391167 24391168 - SC-8_LTR 4951 0.0003 (1/2994) 0 * Os_TE_179191 Os_TE_179191 Chr7 24391163 24391162 + SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_179192 Os_TE_179173 Chr7 24384136 24384135 + TRUNCATOR 2918 0.0014 (3/2179) 0 * Os_TE_179172 Os_TE_179172 Chr7 24384135 24384136 - TRUNCATOR 2918 0.0029 (3/1017) 0 * Os_TE_179173 Os_TE_179170 Chr7 24383773 24383772 + OSMAR1 5265 0.0013 (4/2982) 0 * Os_TE_179169 Os_TE_179169 Chr7 24383770 24383771 - OSMAR1 5265 0.0017 (5/2976) 0 * Os_TE_179170 Os_TE_179137 Chr7 24361021 24361022 + ORSgTEMT00101587 341 0.0003 (1/2988) 0 * * Os_TE_179130 Chr7 24357052 24355405 + ENSPM4_OS 11610 0.0682 (203/2978) 1 Intact * Os_TE_179066 Chr7 24306764 24306763 + STOWAWAY21_OS 243 0.0148 (44/2981) 0 * Os_TE_179065 Os_TE_179065 Chr7 24306763 24306764 + ORSgTEMT01601122 212 0.0141 (42/2984) 0 * Os_TE_179066 Os_TE_179040 Chr7 24303574 24303575 + ORSgTERTOOT00009 12852 0.4185 (1242/2968) 0 * * Os_TE_179032 Chr7 24300187 24300186 + COPI2_LTR 4733 0.0003 (1/2952) 0 * * Os_TE_179005 Chr7 24282818 24289397 + RIREX_LTR 8828 0.0922 (267/2897) 1 Intact * Os_TE_178970 Chr7 24262056 24262057 - TNR2A 152 0.2993 (850/2840) 0 * * Os_TE_178969 Chr7 24261901 24261900 - DITAILA 257 0.0088 (26/2951) 0 * * Os_TE_178960 Chr7 24256209 24256210 + ORSiTERTOOT00296 5553 0.0003 (1/2988) 0 * Os_TE_178959 Os_TE_178959 Chr7 24256205 24256204 - SC-3_LTR 5748 0.0003 (1/2989) 0 * Os_TE_178960 Os_TE_178958 Chr7 24255522 24255523 + SC-8_LTR 4951 0.0003 (1/2984) 0 * Os_TE_178957 Os_TE_178957 Chr7 24255518 24255517 - SC-8_LTR 4951 0.0003 (1/2984) 0 * Os_TE_178958 Os_TE_178956 Chr7 24255299 24255298 - RPO_OS 1983 0.1590 (476/2994) 0 * Os_TE_178955 Os_TE_178955 Chr7 24255298 24255299 + RPO_OS 1983 0.1601 (479/2991) 0 * Os_TE_178956 Os_TE_178931 Chr7 24244476 24244477 + ORSiCMCM00100013 9728 0.0003 (1/2996) 0 * * Os_TE_178927 Chr7 24243372 24243373 - ORSgTEMT02400246 177 0.6364 (1876/2948) 0 * * Os_TE_178906 Chr7 24233847 24233848 + RIRE5-LTR_OS 6427 0.0071 (21/2960) 0 * Os_TE_178905 Os_TE_178905 Chr7 24233840 24233839 - RIRE5-LTR_OS 6427 0.0074 (22/2961) 0 * Os_TE_178906 Os_TE_178879 Chr7 24221435 24221436 - RETROFIT5_LTR 4785 0.0007 (2/2989) 0 * * Os_TE_178831 Chr7 24194369 24194370 + ORSgTETNOOT00221 261 0.5943 (1765/2970) 0 * * Os_TE_178829 Chr7 24194280 24194281 + ORSiCMCM00100019 2717 0.0007 (2/2895) 0 * Os_TE_178828 Os_TE_178828 Chr7 24194276 24194275 - TRUNCATOR2_LTR 2904 0.0010 (3/2972) 0 * Os_TE_178829 Os_TE_178827 Chr7 24194229 24194083 + TNR2A 152 0.3966 (1180/2975) 1 Intact Os_TE_178826 Os_TE_178826 Chr7 24194083 24194227 - TNR2A 152 0.3934 (1170/2974) 1 Intact Os_TE_178827 Os_TE_178796 Chr7 24176482 24176483 - RIREX_LTR 8828 0.0123 (37/2996) 0 * Os_TE_178795 Os_TE_178795 Chr7 24176478 24176477 + RIREX_LTR 8828 0.0127 (38/2997) 0 * Os_TE_178796 Os_TE_178794 Chr7 24176080 24176081 - ORSgTETNOOT00053 263 0.0037 (11/2992) 0 * Os_TE_178793 Os_TE_178793 Chr7 24176078 24176077 - INDITTO 263 0.0037 (11/2994) 0 * Os_TE_178794 Os_TE_178791 Chr7 24175974 24175973 - COPI2_LTR 4733 0.0003 (1/2993) 0 * * Os_TE_178762 Chr7 24159013 24159014 + RIREX_LTR 8828 0.0003 (1/2978) 0 * Os_TE_178761 Os_TE_178761 Chr7 24159009 24159008 - RIREX_LTR 8828 0.0003 (1/2977) 0 * Os_TE_178762 Os_TE_178757 Chr7 24156138 24156139 - INDITTO 263 0.0007 (2/2993) 0 * Os_TE_178756 Os_TE_178756 Chr7 24156136 24156135 + INDITTO 263 0.0007 (2/2995) 0 * Os_TE_178757 Os_TE_178755 Chr7 24152738 24152739 + INDITTO 263 0.0003 (1/2994) 0 * Os_TE_178754 Os_TE_178754 Chr7 24152736 24152735 - INDITTO 263 0.0003 (1/2992) 0 * Os_TE_178755 Os_TE_178740 Chr7 24144705 24145038 - NDNA1TNA_OS 334 0.0940 (267/2841) 1 Intact * Os_TE_178666 Chr7 24101963 24101962 - TYPEM 227 0.0007 (2/2971) 0 * * Os_TE_178665 Chr7 24101571 24101572 + RIREX_LTR 8828 0.0007 (2/2906) 0 * Os_TE_178664 Os_TE_178664 Chr7 24101567 24101566 - RIREX_LTR 8828 0.0007 (2/2902) 0 * Os_TE_178665 Os_TE_178650 Chr7 24097825 24097563 - INDITTO 263 0.0934 (280/2999) 1 Intact * Os_TE_178617 Chr7 24084290 24084291 + NDNA2TNA_OS 346 0.0074 (22/2989) 0 * Os_TE_178616 Os_TE_178616 Chr7 24084288 24084287 - NDNA2TNA_OS 346 0.0074 (22/2990) 0 * Os_TE_178617 Os_TE_178609 Chr7 24078958 24078959 - MPING 430 0.0003 (1/2996) 0 * Os_TE_178608 Os_TE_178608 Chr7 24078956 24078955 + MPING 430 0.0003 (1/2996) 0 * Os_TE_178609 Os_TE_178606 Chr7 24077952 24077953 - RIREX_LTR 8828 0.0013 (4/2996) 0 * Os_TE_178605 Os_TE_178605 Chr7 24077948 24077947 + RIREX_LTR 8828 0.0013 (4/2995) 0 * Os_TE_178606 Os_TE_178604 Chr7 24077934 24077935 - SC-8_LTR 4951 0.0010 (3/2995) 0 * Os_TE_178603 Os_TE_178603 Chr7 24077930 24077929 + SC-8_LTR 4951 0.0010 (3/2995) 0 * Os_TE_178604 Os_TE_178593 Chr7 24075934 24075935 - ORSgTETNOOT02417 265 0.4343 (1298/2989) 0 * Os_TE_178592 Os_TE_178592 Chr7 24075932 24075931 - INDITTO 263 0.4320 (1287/2979) 0 * Os_TE_178593 Os_TE_178561 Chr7 24061675 24061676 - COPI2_LTR 4733 0.0004 (1/2820) 0 * * Os_TE_178550 Chr7 24057272 24057273 + COPIA2-LTR_OS 6433 0.0028 (8/2889) 0 * Os_TE_178549 Os_TE_178549 Chr7 24057268 24057267 - COPIA2-LTR_OS 6433 0.0028 (8/2887) 0 * Os_TE_178550 Os_TE_178544 Chr7 24056441 24056442 + COPIA2-LTR_OS 6433 0.0117 (35/2995) 0 * Os_TE_178543 Os_TE_178543 Chr7 24056437 24056436 - COPIA2-LTR_OS 6433 0.0124 (37/2993) 0 * Os_TE_178544 Os_TE_178541 Chr7 24056233 24056232 + SZ-9LTR 965 0.6040 (1798/2977) 0 * * Os_TE_178511 Chr7 24038774 24038573 + ORSgTEMT01601525 239 0.8190 (1253/1530) 1 Intact * Os_TE_178496 Chr7 24031546 24027070 + RETROSAT4_LTR 13504 0.3964 (1163/2934) 1 Solo_LTR Os_TE_178495 Os_TE_178495 Chr7 24027070 24031546 - RETROSAT4_LTR 13504 0.4037 (1189/2945) 1 Solo_LTR Os_TE_178496 Os_TE_178470 Chr7 24014461 24014462 - ORSgTEMT02400179 221 0.0007 (2/2997) 0 * Os_TE_178469 Os_TE_178469 Chr7 24014460 24014459 - TYPEM 227 0.0007 (2/2997) 0 * Os_TE_178470 Os_TE_178463 Chr7 24011474 24011475 + SZ-14LTR 1193 0.0003 (1/2954) 0 * * Os_TE_178423 Chr7 24001838 24001839 + RIREX_LTR 8828 0.0003 (1/2989) 0 * Os_TE_178422 Os_TE_178422 Chr7 24001834 24001833 - RIREX_LTR 8828 0.0003 (1/2990) 0 * Os_TE_178423 Os_TE_178415 Chr7 23999939 23999940 + SZ-67LTR 1540 0.0058 (17/2956) 0 * * Os_TE_178358 Chr7 23985273 23985274 - TEMPINDAS 4259 0.0008 (2/2639) 0 * * Os_TE_178355 Chr7 23983269 23983270 - Cassandra_OS-LTR 764 0.0007 (2/2994) 0 * * Os_TE_178350 Chr7 23979815 23979816 - SZ-35LTR 3853 0.0007 (2/2962) 0 * Os_TE_178349 Os_TE_178349 Chr7 23979811 23979810 + RETROSAT4_LTR 13504 0.0007 (2/2952) 0 * Os_TE_178350 Os_TE_178345 Chr7 23977798 23977799 - RETROSAT4_LTR 13504 0.0017 (5/2996) 0 * Os_TE_178344 Os_TE_178344 Chr7 23977794 23977793 + RETROSAT4_LTR 13504 0.0017 (5/2997) 0 * Os_TE_178345 Os_TE_178343 Chr7 23977002 23977003 - TELIA 141 0.0003 (1/2998) 0 * Os_TE_178342 Os_TE_178342 Chr7 23976994 23976993 + TELIA 141 0.0003 (1/2999) 0 * Os_TE_178343 Os_TE_178331 Chr7 23965762 23965763 - TELIA 141 0.0008 (1/1255) 0 * Os_TE_178330 Os_TE_178330 Chr7 23965754 23965753 + TELIA 141 0.0003 (1/2952) 0 * Os_TE_178331 Os_TE_178329 Chr7 23964416 23964417 + COPIA2-LTR_OS 6433 0.0013 (4/2988) 0 * Os_TE_178328 Os_TE_178328 Chr7 23964412 23964411 - COPIA2-LTR_OS 6433 0.0013 (4/2985) 0 * Os_TE_178329 Os_TE_178327 Chr7 23963942 23963943 - COPI2_LTR 4733 0.0003 (1/2971) 0 * * Os_TE_178323 Chr7 23959458 23959459 + TRSA_OS 353 0.0003 (1/2978) 0 * * Os_TE_178286 Chr7 23937299 23937300 - ORSgTETNOOT00053 263 0.0007 (2/2999) 0 * Os_TE_178285 Os_TE_178285 Chr7 23937297 23937296 - INDITTO 263 0.0007 (2/2997) 0 * Os_TE_178286 Os_TE_178284 Chr7 23937089 23937090 + ORSiTERTOOT00367 5639 0.0003 (1/2999) 0 * Os_TE_178283 Os_TE_178283 Chr7 23937085 23937084 - ORSiTERTOOT00367 5639 0.0003 (1/2999) 0 * Os_TE_178284 Os_TE_178262 Chr7 23924307 23924306 + NDNA2TNA_OS 346 0.4866 (1457/2994) 0 * * Os_TE_178200 Chr7 23890458 23890459 - SC-8_LTR 4951 0.0003 (1/2991) 0 * Os_TE_178199 Os_TE_178199 Chr7 23890454 23890453 + SC-8_LTR 4951 0.0003 (1/2993) 0 * Os_TE_178200 Os_TE_178192 Chr7 23885470 23885471 + COPIA2-LTR_OS 6433 0.4830 (1434/2969) 0 * * Os_TE_178180 Chr7 23880814 23880815 - COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_178179 Os_TE_178179 Chr7 23880810 23880809 + COPI2_LTR 4733 0.0003 (1/2997) 0 * Os_TE_178180 Os_TE_178155 Chr7 23872745 23872746 + MPING 430 0.0003 (1/2994) 0 * Os_TE_178154 Os_TE_178154 Chr7 23872743 23872742 - MPING 430 0.0003 (1/2996) 0 * Os_TE_178155 Os_TE_178145 Chr7 23865226 23865227 + MPING 430 0.0030 (9/2996) 0 * Os_TE_178144 Os_TE_178144 Chr7 23865224 23865223 - MPING 430 0.0030 (9/2994) 0 * Os_TE_178145 Os_TE_178143 Chr7 23864992 23864993 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * * Os_TE_178099 Chr7 23849113 23849114 + TELIA 141 0.0003 (1/2996) 0 * Os_TE_178098 Os_TE_178098 Chr7 23849105 23849104 - TELIA 141 0.0003 (1/2996) 0 * Os_TE_178099 Os_TE_178083 Chr7 23834626 23834627 - SZ-22_LTR 4403 0.0020 (6/2995) 0 * Os_TE_178082 Os_TE_178082 Chr7 23834622 23834621 + ORSiTERTOOT00226 792 0.0020 (6/2994) 0 * Os_TE_178083 Os_TE_178079 Chr7 23833309 23833310 + TWIF 586 0.0003 (1/2931) 0 * Os_TE_178078 Os_TE_178078 Chr7 23833302 23833301 - ORSiTETNOOT00134 607 0.0003 (1/2936) 0 * Os_TE_178079 Os_TE_178063 Chr7 23828408 23828409 - ORSiTERTOOT00074 4935 0.0003 (1/2975) 0 * Os_TE_178062 Os_TE_178062 Chr7 23828404 23828403 + ORSiTERTOOT00074 4935 0.0003 (1/2970) 0 * Os_TE_178063 Os_TE_178051 Chr7 23822456 23822457 - RIRE2_LTR 11306 0.0003 (1/2996) 0 * Os_TE_178050 Os_TE_178050 Chr7 23822452 23822451 + RIRE2_LTR 11306 0.0003 (1/2997) 0 * Os_TE_178051 Os_TE_178042 Chr7 23820222 23820223 + RIRE2_LTR 11306 0.3278 (976/2977) 0 * Os_TE_178041 Os_TE_178041 Chr7 23820218 23820217 - RIRE2_LTR 11306 0.3334 (997/2990) 0 * Os_TE_178042 Os_TE_178019 Chr7 23806229 23806230 - SUSU 279 0.0013 (4/2983) 0 * Os_TE_178018 Os_TE_178018 Chr7 23806228 23806227 + ORSgTEMT05000092 279 0.0017 (5/2989) 0 * Os_TE_178019 Os_TE_178012 Chr7 23803826 23803825 - COPI2_LTR 4733 0.0202 (60/2970) 0 * * Os_TE_177997 Chr7 23792388 23792389 - SZ-22_LTR 4403 0.0003 (1/2981) 0 * Os_TE_177996 Os_TE_177996 Chr7 23792384 23792383 + ORSiTERTOOT00226 792 0.0003 (1/2983) 0 * Os_TE_177997 Os_TE_177992 Chr7 23789161 23789162 - SC-3_LTR 5748 0.0010 (3/2993) 0 * Os_TE_177991 Os_TE_177991 Chr7 23789157 23789156 + ORSiTERTOOT00296 5553 0.0010 (3/2992) 0 * Os_TE_177992 Os_TE_177975 Chr7 23780475 23779511 - SZ-9LTR 965 0.5796 (1719/2966) 1 Intact * Os_TE_177972 Chr7 23774078 23775042 + SZ-9LTR 965 0.5818 (1729/2972) 1 Intact * Os_TE_177971 Chr7 23773531 23773532 + ORSgTEMT00101341 314 0.4331 (1286/2969) 0 * Os_TE_177970 Os_TE_177970 Chr7 23773530 23773529 - NDNA1TNA_OS 334 0.4369 (1298/2971) 0 * Os_TE_177971 Os_TE_177908 Chr7 23748935 23748936 - SZ-40LTR 2465 0.0003 (1/2980) 0 * Os_TE_177907 Os_TE_177907 Chr7 23748931 23748930 + SZ-40LTR 2465 0.0003 (1/2983) 0 * Os_TE_177908 Os_TE_177906 Chr7 23748803 23748804 - SZ-22_LTR 4403 0.0007 (2/2980) 0 * Os_TE_177905 Os_TE_177905 Chr7 23748799 23748798 + ORSiTERTOOT00226 792 0.0007 (2/2979) 0 * Os_TE_177906 Os_TE_177841 Chr7 23726533 23726534 - ORSgTETNOOT00477 252 0.0003 (1/2966) 0 * Os_TE_177840 Os_TE_177840 Chr7 23726528 23726527 + ORSgTETNOOT01531 255 0.0003 (1/2977) 0 * Os_TE_177841 Os_TE_177837 Chr7 23725973 23725972 + STOWAWAY51_OS 246 0.0007 (2/2993) 0 * Os_TE_177836 Os_TE_177836 Chr7 23725967 23725968 - STOWAWAY51_OS 246 0.0007 (2/2993) 0 * Os_TE_177837 Os_TE_177826 Chr7 23720915 23718512 - MuDR4_OS 7610 0.3909 (1170/2993) 1 Intact Os_TE_177825 Os_TE_177825 Chr7 23718511 23720914 - MuDR4_OS 7610 0.3901 (1166/2989) 1 Intact Os_TE_177826 Os_TE_177824 Chr7 23718173 23718172 - RETROSAT2LTR 12796 0.0281 (84/2991) 0 * * Os_TE_177783 Chr7 23700593 23700594 + RETROSAT2LTR 12796 0.6270 (1730/2759) 0 * * Os_TE_177746 Chr7 23677744 23677745 - MDR2 6967 0.0017 (5/2926) 0 * Os_TE_177745 Os_TE_177745 Chr7 23677735 23677734 - MDR2 6967 0.0014 (4/2933) 0 * Os_TE_177746 Os_TE_177741 Chr7 23676633 23676634 + MPING 430 0.0053 (16/2998) 0 * Os_TE_177740 Os_TE_177740 Chr7 23676631 23676630 - MPING 430 0.0053 (16/2998) 0 * Os_TE_177741 Os_TE_177694 Chr7 23654664 23654663 + ORSiTERTOOT00197 5280 0.0003 (1/2996) 0 * * Os_TE_177691 Chr7 23650250 23650249 - STOWAWAY51_OS 246 0.0003 (1/2879) 0 * * Os_TE_177660 Chr7 23638016 23638015 - SC-3_LTR 5748 0.6018 (1797/2986) 0 * * Os_TE_177659 Chr7 23636763 23636543 - ORSgTEMT02400179 221 0.2621 (783/2987) 1 Intact * Os_TE_177652 Chr7 23631042 23631043 - ORSgTERT00201216 11284 0.0529 (154/2909) 0 * Os_TE_177651 Os_TE_177651 Chr7 23631038 23631037 - RIRE2_LTR 11306 0.0511 (149/2917) 0 * Os_TE_177652 Os_TE_177638 Chr7 23624026 23624025 - ORSgTEMT01601208 238 0.0003 (1/2914) 0 * * Os_TE_177624 Chr7 23619489 23619490 - MuDR2_OS 6770 0.0644 (186/2890) 0 * Os_TE_177623 Os_TE_177623 Chr7 23619481 23619480 + MuDR2_OS 6770 0.0589 (169/2871) 0 * Os_TE_177624 Os_TE_177581 Chr7 23600281 23600282 - MPING 430 0.0007 (2/2997) 0 * Os_TE_177580 Os_TE_177580 Chr7 23600279 23600278 + MPING 430 0.0007 (2/2995) 0 * Os_TE_177581 Os_TE_177578 Chr7 23596736 23596737 + ORSiOTOT00000037 220 0.0007 (2/2972) 0 * * Os_TE_177577 Chr7 23596334 23589876 - RIRE5-LTR_OS 6427 0.4147 (1243/2997) 1 Intact Os_TE_177573 Os_TE_177573 Chr7 23589876 23596334 + RIRE5-LTR_OS 6427 0.4051 (1201/2965) 1 Intact Os_TE_177577 Os_TE_177547 Chr7 23577322 23577323 - COPI2_LTR 4733 0.0010 (3/2992) 0 * Os_TE_177546 Os_TE_177546 Chr7 23577318 23577317 + COPI2_LTR 4733 0.0010 (3/2991) 0 * Os_TE_177547 Os_TE_177543 Chr7 23576782 23576783 + COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_177542 Os_TE_177542 Chr7 23576778 23576777 - COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_177543 Os_TE_177534 Chr7 23574141 23574142 - COPI2_LTR 4733 0.0003 (1/2988) 0 * Os_TE_177533 Os_TE_177533 Chr7 23574137 23574136 + COPI2_LTR 4733 0.0003 (1/2991) 0 * Os_TE_177534 Os_TE_177501 Chr7 23550908 23550909 - COPIA2-LTR_OS 6433 0.0003 (1/2984) 0 * Os_TE_177500 Os_TE_177500 Chr7 23550904 23550903 + COPIA2-LTR_OS 6433 0.0003 (1/2983) 0 * Os_TE_177501 Os_TE_177499 Chr7 23550734 23550733 + ORSgTEMT01701591 154 0.0003 (1/2982) 0 * * Os_TE_177489 Chr7 23546965 23546966 - JOUZHENA 607 0.0013 (4/2977) 0 * Os_TE_177488 Os_TE_177488 Chr7 23546958 23546957 + JOUZHENA 607 0.0017 (5/2977) 0 * Os_TE_177489 Os_TE_177487 Chr7 23546657 23546658 - SZ-51LTR 414 0.0010 (3/2976) 0 * * Os_TE_177467 Chr7 23537757 23537758 + MPING 430 0.0074 (22/2966) 0 * Os_TE_177466 Os_TE_177466 Chr7 23537755 23537754 - MPING 430 0.0071 (21/2969) 0 * Os_TE_177467 Os_TE_177460 Chr7 23536860 23536861 + INDITTO 263 0.0003 (1/2982) 0 * Os_TE_177459 Os_TE_177459 Chr7 23536858 23536857 - INDITTO 263 0.0003 (1/2978) 0 * Os_TE_177460 Os_TE_177450 Chr7 23527267 23527268 - TRUNCATOR2_LTR 2904 0.0003 (1/2863) 0 * * Os_TE_177440 Chr7 23522802 23522803 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * * Os_TE_177421 Chr7 23517185 23517186 - COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_177420 Os_TE_177420 Chr7 23517181 23517180 + COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * Os_TE_177421 Os_TE_177397 Chr7 23501335 23501336 + ORSgTEMT00500476 150 0.2208 (651/2949) 0 * * Os_TE_177395 Chr7 23501112 23501113 - COPI2_LTR 4733 0.0003 (1/2986) 0 * Os_TE_177394 Os_TE_177394 Chr7 23501108 23501107 + COPI2_LTR 4733 0.0003 (1/2988) 0 * Os_TE_177395 Os_TE_177392 Chr7 23501015 23501016 + ORSgTEMT00500201 140 0.2361 (707/2995) 0 * * Os_TE_177387 Chr7 23498373 23498374 - ORSiTERTOOT00367 5639 0.0101 (30/2984) 0 * Os_TE_177386 Os_TE_177386 Chr7 23498369 23498368 + ORSiTERTOOT00367 5639 0.0101 (30/2976) 0 * Os_TE_177387 Os_TE_177377 Chr7 23495582 23495583 - ORSgTEMT00501447 126 0.2391 (711/2974) 0 * Os_TE_177376 Os_TE_177376 Chr7 23495580 23495579 + ORSgTETNOOT01275 140 0.0429 (103/2403) 0 * Os_TE_177377 Os_TE_177375 Chr7 23495512 23495178 + NDNA1TNA_OS 334 0.1720 (513/2982) 1 Intact Os_TE_177374 Os_TE_177374 Chr7 23495176 23495512 + ORSgTEMT00100531 325 0.1764 (526/2982) 1 Intact Os_TE_177375 Os_TE_177372 Chr7 23491590 23491591 + ID-2 308 0.0014 (4/2794) 0 * * Os_TE_177370 Chr7 23491140 23491141 - INDITTO 263 0.5431 (1626/2994) 0 * Os_TE_177369 Os_TE_177369 Chr7 23491138 23491137 + INDITTO 263 0.5438 (1628/2994) 0.05 * Os_TE_177370 Os_TE_177368 Chr7 23490694 23485892 - RETROFIT6_LTR 4799 0.2265 (534/2358) 1 Intact Os_TE_177366 Os_TE_177366 Chr7 23485892 23490694 + RETROFIT6_LTR 4799 0.2276 (537/2359) 1 Intact Os_TE_177368 Os_TE_177362 Chr7 23483539 23483540 - STOWAWAY51_OS 246 0.0003 (1/2996) 0 * * Os_TE_177337 Chr7 23473658 23473657 + RETRO2_LTR 12874 0.1448 (420/2900) 0 * * Os_TE_177328 Chr7 23470312 23470313 + TRUNCATOR 2918 0.0010 (3/2890) 0 * * Os_TE_177291 Chr7 23445193 23445194 + COPIA2-LTR_OS 6433 0.0003 (1/2979) 0 * Os_TE_177290 Os_TE_177290 Chr7 23445189 23445188 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_177291 Os_TE_177257 Chr7 23433299 23433298 - STOWAWAY51_OS 246 0.0003 (1/2975) 0 * * Os_TE_177212 Chr7 23413505 23413506 + RIRE2_LTR 11306 0.0598 (178/2979) 0 * Os_TE_177211 Os_TE_177211 Chr7 23413501 23413500 - RIRE2_LTR 11306 0.0590 (175/2968) 0 * Os_TE_177212 Os_TE_177210 Chr7 23413209 23413210 + ORSiTERTOOT00226 792 0.0017 (5/2949) 0 * Os_TE_177209 Os_TE_177209 Chr7 23413205 23413204 - SZ-22_LTR 4403 0.0017 (5/2947) 0 * Os_TE_177210 Os_TE_177184 Chr7 23405545 23405546 - NDNA1TNA_OS 334 0.0294 (88/2996) 0 * Os_TE_177183 Os_TE_177183 Chr7 23405543 23405542 + NDNA1TNA_OS 334 0.0300 (90/2998) 0 * Os_TE_177184 Os_TE_177177 Chr7 23402317 23402318 - TESS 244 0.1354 (405/2992) 0 * * Os_TE_177173 Chr7 23400460 23400461 + COPIA2-LTR_OS 6433 0.0003 (1/2980) 0 * Os_TE_177172 Os_TE_177172 Chr7 23400456 23400455 - COPIA2-LTR_OS 6433 0.0003 (1/2976) 0 * Os_TE_177173 Os_TE_177148 Chr7 23386996 23386888 + SINE1OS 127 0.3245 (954/2940) 1 Intact * Os_TE_177146 Chr7 23385900 23385901 - COPI2_LTR 4733 0.0003 (1/2988) 0 * Os_TE_177145 Os_TE_177145 Chr7 23385896 23385895 + COPI2_LTR 4733 0.0003 (1/2991) 0 * Os_TE_177146 Os_TE_177118 Chr7 23379899 23379900 - SC-3_LTR 5748 0.0004 (1/2750) 0 * Os_TE_177117 Os_TE_177117 Chr7 23379895 23379894 + ORSiTERTOOT00296 5553 0.0004 (1/2742) 0 * Os_TE_177118 Os_TE_177088 Chr7 23372715 23372716 - ORSiTETNOOT00134 607 0.0003 (1/2991) 0 * * Os_TE_177075 Chr7 23369087 23369086 + ORSgTETNOOT00908 242 0.0004 (1/2843) 0 * * Os_TE_177017 Chr7 23352149 23352148 + RPO_OS 1983 0.0013 (4/2997) 0 * Os_TE_177016 Os_TE_177016 Chr7 23352148 23352149 - RPO_OS 1983 0.0013 (4/2996) 0 * Os_TE_177017 Os_TE_177005 Chr7 23343888 23343650 + ORSgTEMT06100023 259 0.2203 (659/2992) 1 Intact * Os_TE_176994 Chr7 23341161 23341160 - RIREX_LTR 8828 0.0017 (5/2861) 0 * * Os_TE_176967 Chr7 23334102 23334103 + ORSgTEMT00501279 126 0.8203 (2401/2927) 0 * * Os_TE_176966 Chr7 23334001 23332571 - MERMITE 1401 0.1953 (561/2872) 1 Intact * Os_TE_176960 Chr7 23332060 23332059 + SETARIA2 1142 0.2785 (562/2018) 0 * * Os_TE_176959 Chr7 23330415 23330416 - MPING 430 0.0006 (1/1601) 0 * Os_TE_176958 Os_TE_176958 Chr7 23330413 23330412 + MPING 430 0.0003 (1/2982) 0 * Os_TE_176959 Os_TE_176946 Chr7 23323776 23325225 + MERMITEB 1610 0.2148 (573/2668) 1 Intact * Os_TE_176941 Chr7 23322628 23322629 + RIREX_LTR 8828 0.0017 (5/2995) 0 * Os_TE_176940 Os_TE_176940 Chr7 23322624 23322623 - RIREX_LTR 8828 0.0017 (5/2992) 0 * Os_TE_176941 Os_TE_176924 Chr7 23317027 23317028 + RETROSAT3_LTR 11537 0.0076 (21/2757) 0 * Os_TE_176923 Os_TE_176923 Chr7 23317023 23317022 - RETROSAT3_LTR 11537 0.0078 (21/2709) 0 * Os_TE_176924 Os_TE_176913 Chr7 23314575 23314576 - COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * * Os_TE_176904 Chr7 23313656 23313657 - ORSgTEMT00500578 129 0.0018 (5/2830) 0 * * Os_TE_176870 Chr7 23297955 23297954 - COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * * Os_TE_176859 Chr7 23291976 23291977 + COPI2_LTR 4733 0.0003 (1/2976) 0 * Os_TE_176858 Os_TE_176858 Chr7 23291972 23291971 - COPI2_LTR 4733 0.0003 (1/2978) 0 * Os_TE_176859 Os_TE_176856 Chr7 23289404 23289405 - COPI2_LTR 4733 0.0003 (1/2986) 0 * * Os_TE_176853 Chr7 23288761 23288760 - TYPEM 227 0.6387 (1858/2909) 0 * * Os_TE_176840 Chr7 23282557 23282556 - STOWAWAY45_OS 266 0.0624 (186/2982) 0 * Os_TE_176839 Os_TE_176839 Chr7 23282554 23282555 + STOWAWAY45_OS 266 0.0617 (183/2964) 0 * Os_TE_176840 Os_TE_176838 Chr7 23281563 23281564 - COPIA2-LTR_OS 6433 0.0047 (14/2991) 0 * Os_TE_176837 Os_TE_176837 Chr7 23281559 23281558 + COPIA2-LTR_OS 6433 0.0043 (13/2990) 0 * Os_TE_176838 Os_TE_176830 Chr7 23278033 23278034 + RETRO1_LTR 8314 0.0670 (195/2910) 0 * Os_TE_176829 Os_TE_176829 Chr7 23278029 23278028 - RETRO1_LTR 8314 0.0659 (193/2930) 0 * Os_TE_176830 Os_TE_176817 Chr7 23273753 23273752 - COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * * Os_TE_176804 Chr7 23266758 23266757 - STOWAWAY51_OS 246 0.0003 (1/2972) 0 * Os_TE_176803 Os_TE_176803 Chr7 23266755 23266756 - STOWAWAY51_OS 246 0.0003 (1/2989) 0 * Os_TE_176804 Os_TE_176801 Chr7 23266537 23266536 + RIREX_LTR 8828 0.0024 (7/2972) 0 * * Os_TE_176780 Chr7 23251184 23251185 - COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_176779 Os_TE_176779 Chr7 23251180 23251179 + COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_176780 Os_TE_176770 Chr7 23248838 23248839 + STOWAWAY43_OS 233 0.7100 (2115/2979) 0 * * Os_TE_176762 Chr7 23242872 23242873 - TESS 244 0.1101 (329/2988) 0 * Os_TE_176761 Os_TE_176761 Chr7 23242865 23242864 + ORSgTETNOOT01668 244 0.1109 (331/2985) 0 * Os_TE_176762 Os_TE_176760 Chr7 23242584 23242585 + GYPSY-A_LTR 8951 0.0117 (35/2986) 0 * Os_TE_176759 Os_TE_176759 Chr7 23242580 23242579 - GYPSY-A_LTR 8951 0.0121 (36/2984) 0 * Os_TE_176760 Os_TE_176720 Chr7 23229585 23229586 - OSTE20 496 0.3936 (1172/2978) 0 * Os_TE_176719 Os_TE_176719 Chr7 23229581 23229580 - OSTE20 496 0.3738 (1089/2913) 0 * Os_TE_176720 Os_TE_176718 Chr7 23229416 23229417 - RIRE2_LTR 11306 0.0007 (2/2998) 0 * Os_TE_176717 Os_TE_176717 Chr7 23229412 23229411 + RIREX_LTR 8828 0.0007 (2/2996) 0 * Os_TE_176718 Os_TE_176707 Chr7 23223584 23223585 - RETROSAT2LTR 12796 0.0010 (3/2953) 0 * * Os_TE_176705 Chr7 23223248 23223249 + RETROSAT2LTRA 3112 0.6342 (1893/2985) 0 * Os_TE_176704 Os_TE_176704 Chr7 23223246 23223245 - RETROSAT2LTR 12796 0.6394 (1915/2995) 0 * Os_TE_176705 Os_TE_176694 Chr7 23222567 23222568 - ORSgTEMT00600085 364 0.0087 (26/2981) 0 * Os_TE_176693 Os_TE_176693 Chr7 23222566 23222565 + CASTAWAY 364 0.0095 (25/2641) 0 * Os_TE_176694 Os_TE_176685 Chr7 23214506 23214507 - ORSgTEMT02400179 221 0.0003 (1/2937) 0 * Os_TE_176684 Os_TE_176684 Chr7 23214505 23214504 - TYPEM 227 0.0003 (1/2949) 0 * Os_TE_176685 Os_TE_176683 Chr7 23214405 23214406 + CACTA-M 1129 0.5043 (1175/2330) 0 * * Os_TE_176682 Chr7 23213509 23213510 + AMYLTP 383 0.6187 (1733/2801) 0 * Os_TE_176681 Os_TE_176681 Chr7 23213501 23213500 - AMYLTP 383 0.6417 (1888/2942) 0 * Os_TE_176682 Os_TE_176679 Chr7 23213308 23213307 + MPING 430 0.0003 (1/2890) 0 * * Os_TE_176672 Chr7 23210901 23210902 - COPI2_LTR 4733 0.0003 (1/2992) 0 * Os_TE_176671 Os_TE_176671 Chr7 23210897 23210896 + COPI2_LTR 4733 0.0003 (1/2988) 0 * Os_TE_176672 Os_TE_176657 Chr7 23199808 23199809 - INDITTO 263 0.0068 (20/2933) 0 * Os_TE_176656 Os_TE_176656 Chr7 23199806 23199805 + INDITTO 263 0.0063 (19/2995) 0 * Os_TE_176657 Os_TE_176655 Chr7 23199783 23199784 + ORSgTETNOOT01668 244 0.1348 (404/2996) 0 * * Os_TE_176647 Chr7 23194331 23194332 + AMYLTP 383 0.1107 (330/2981) 0 * Os_TE_176646 Os_TE_176646 Chr7 23194323 23194322 - AMYLTP 383 0.1116 (332/2975) 0 * Os_TE_176647 Os_TE_176643 Chr7 23193623 23193624 + ORSiTETN00100011 676 0.3979 (1181/2968) 0 * Os_TE_176642 Os_TE_176642 Chr7 23193611 23193610 + DS-RICE4N 715 0.3946 (1165/2952) 0 * Os_TE_176643 Os_TE_176623 Chr7 23187060 23187061 + OSTE20 496 0.0598 (179/2991) 0 * Os_TE_176622 Os_TE_176622 Chr7 23187056 23187055 + OSTE20 496 0.0593 (177/2987) 0 * Os_TE_176623 Os_TE_176610 Chr7 23176734 23176733 + HELITRON7_OS 10153 0.0629 (188/2990) 0 * Os_TE_176609 Os_TE_176609 Chr7 23176730 23176731 - HELITRON7_OS 10153 0.0612 (183/2988) 0 * Os_TE_176610 Os_TE_176607 Chr7 23176433 23176432 + ORSgTEMT01601591 242 0.0965 (289/2994) 0 * Os_TE_176606 Os_TE_176606 Chr7 23176427 23176428 + STOWAWAY51_OS 246 0.0977 (293/2998) 0 * Os_TE_176607 Os_TE_176577 Chr7 23166690 23166691 - RIREX_LTR 8828 0.0020 (6/2969) 0 * Os_TE_176576 Os_TE_176576 Chr7 23166686 23166685 + RIREX_LTR 8828 0.0020 (6/2968) 0 * Os_TE_176577 Os_TE_176566 Chr7 23163383 23163384 - SC-3_LTR 5748 0.0010 (3/2991) 0 * Os_TE_176565 Os_TE_176565 Chr7 23163379 23163378 + ORSiTERTOOT00296 5553 0.0010 (3/2990) 0 * Os_TE_176566 Os_TE_176546 Chr7 23144425 23144424 + ORSgTEMT01601591 242 0.0003 (1/2963) 0 * * Os_TE_176545 Chr7 23144174 23131877 - RETRO2_LTR 12874 0.1552 (463/2983) 1 Intact Os_TE_176538 Os_TE_176538 Chr7 23131877 23144174 + RETRO2_LTR 12874 0.1485 (440/2963) 1 Intact Os_TE_176545 Os_TE_176536 Chr7 23131418 23131419 + RIREX_LTR 8828 0.0003 (1/2966) 0 * * Os_TE_176527 Chr7 23129650 23129649 - RETRO2_LTR 12874 0.0919 (271/2950) 0 * * Os_TE_176525 Chr7 23129290 23129291 + ORSiTERTOOT00226 792 0.0003 (1/2977) 0 * Os_TE_176524 Os_TE_176524 Chr7 23129286 23129285 - SZ-22_LTR 4403 0.0003 (1/2977) 0 * Os_TE_176525 Os_TE_176519 Chr7 23128264 23128265 - ORSgTERT00201216 11284 0.0530 (147/2774) 0 * Os_TE_176518 Os_TE_176518 Chr7 23128260 23128259 - RIRE2_LTR 11306 0.0491 (140/2854) 0 * Os_TE_176519 Os_TE_176512 Chr7 23127202 23127062 - TELIA 141 0.0531 (156/2940) 1 Intact Os_TE_176509 Os_TE_176509 Chr7 23127062 23127202 + TELIA 141 0.0485 (144/2967) 1 Intact Os_TE_176512 Os_TE_176475 Chr7 23118303 23118304 + ORSiTERTOOT00296 5553 0.0024 (7/2919) 0 * Os_TE_176474 Os_TE_176474 Chr7 23118299 23118298 - SC-3_LTR 5748 0.0017 (5/2916) 0 * Os_TE_176475 Os_TE_176468 Chr7 23112107 23112108 - NDNA2TNA_OS 346 0.0529 (158/2986) 0 * * Os_TE_176439 Chr7 23101104 23101105 - RETROSAT2LTR 12796 0.4077 (1222/2997) 0 * Os_TE_176438 Os_TE_176438 Chr7 23101102 23101101 + RETROSAT2LTR 12796 0.4017 (1197/2980) 0 * Os_TE_176439 Os_TE_176428 Chr7 23098250 23098249 - ORSgTEMT02400246 177 0.2074 (618/2980) 0 * Os_TE_176427 Os_TE_176427 Chr7 23098249 23098250 - TYPEM 227 0.2068 (616/2979) 0 * Os_TE_176428 Os_TE_176422 Chr7 23096924 23096923 - TNR2A 152 0.0602 (174/2892) 0 * * Os_TE_176360 Chr7 23067110 23067111 + AMYLTP 383 0.0007 (2/2908) 0 * Os_TE_176359 Os_TE_176359 Chr7 23067103 23067102 - AMYLTP 383 0.0007 (2/2908) 0 * Os_TE_176360 Os_TE_176354 Chr7 23065469 23065470 - RETROSAT2LTR 12796 0.0057 (17/2958) 0 * * Os_TE_176332 Chr7 23060132 23060133 + SPMLIKE 10989 0.0004 (1/2634) 0 * * Os_TE_176329 Chr7 23057039 23057038 - MPING 430 0.0003 (1/2906) 0 * * Os_TE_176323 Chr7 23049174 23049175 + STOWAWAY51_OS 246 0.0135 (40/2965) 0 * * Os_TE_176263 Chr7 23011637 23011636 - ORSgTEMT06100010 269 0.0167 (50/2992) 0 * * Os_TE_176257 Chr7 23009965 23009966 + TWIF 586 0.0017 (5/2985) 0 * Os_TE_176256 Os_TE_176256 Chr7 23009958 23009957 - ORSiTETNOOT00134 607 0.0017 (5/2902) 0 * Os_TE_176257 Os_TE_176254 Chr7 23007780 23007781 - ORSgTEMT02000041 194 0.0374 (112/2995) 0 * * Os_TE_176241 Chr7 23002518 23002273 + STOWAWAY51_OS 246 0.0434 (129/2971) 1 Intact Os_TE_176238 Os_TE_176238 Chr7 23002281 23002515 + ORSgTEMT01600726 235 0.0452 (135/2986) 1 Intact Os_TE_176241 Os_TE_176236 Chr7 23001054 23001055 + OLO24 345 0.0003 (1/2995) 0 * * Os_TE_176229 Chr7 22999745 22999434 - STOLAB 312 0.3661 (1096/2994) 1 Intact * Os_TE_176225 Chr7 22999027 22999028 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_176224 Os_TE_176224 Chr7 22999023 22999022 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_176225 Os_TE_176223 Chr7 22998453 22998452 + MERMITE18D 1491 0.6456 (1922/2977) 0 * * Os_TE_176216 Chr7 22996807 22996806 + ORSgTEMT00502094 140 0.6552 (1938/2958) 0 * * Os_TE_176215 Chr7 22996752 22996753 - ORSgTEMT00502257 142 0.0014 (4/2942) 0 * * Os_TE_176209 Chr7 22996138 22996137 + MDR2 6967 0.1015 (233/2296) 0 * * Os_TE_176208 Chr7 22995868 22995655 + COWARD-3 221 0.3604 (1075/2983) 1 Intact Os_TE_176206 Os_TE_176206 Chr7 22995655 22995868 - COWARD 200 0.4197 (910/2168) 1 Intact Os_TE_176208 Os_TE_176202 Chr7 22995297 22995634 + ORSgTEMT00101674 340 0.2517 (753/2992) 1 Intact * Os_TE_176187 Chr7 22992046 22991900 - ORSgTETNOOT01930 140 0.3666 (1098/2995) 1 Intact Os_TE_176185 Os_TE_176185 Chr7 22991897 22992034 + ORSgTEMT00500201 140 0.3638 (1089/2993) 1 Intact Os_TE_176187 Os_TE_176183 Chr7 22991594 22991463 + ORSgTEMT00500385 153 0.3702 (1100/2971) 1 Intact Os_TE_176181 Os_TE_176181 Chr7 22991459 22991586 + ORSgTEMT00500002 133 0.3642 (1088/2987) 1 Intact Os_TE_176183 Os_TE_176175 Chr7 22987031 22987032 + SZ-67LTR 1540 0.5202 (1531/2943) 0 * Os_TE_176174 Os_TE_176174 Chr7 22987027 22987026 - SZ-67LTR 1540 0.5364 (1607/2996) 0 * Os_TE_176175 Os_TE_176162 Chr7 22980706 22980705 + SZ-54_LTR 5203 0.0732 (217/2963) 0 * * Os_TE_176161 Chr7 22980518 22980517 - F524 291 0.0003 (1/2962) 0 * * Os_TE_176155 Chr7 22977235 22977236 + RETRO2_LTR 12874 0.4011 (1195/2979) 0 * Os_TE_176154 Os_TE_176154 Chr7 22977231 22977230 - RETRO2_LTR 12874 0.4086 (1223/2993) 0 * Os_TE_176155 Os_TE_176142 Chr7 22974252 22974251 + RETRO2A_LTR 12895 0.4147 (1186/2860) -1 * * Os_TE_176140 Chr7 22973031 22972892 + ORSgTEMT00500201 140 0.4895 (1439/2940) 1 Intact Os_TE_176139 Os_TE_176139 Chr7 22972888 22973027 - ORSgTEMT00501384 148 0.4900 (1425/2908) 1 Intact Os_TE_176140 Os_TE_176134 Chr7 22967187 22967188 - SC-3_LTR 5748 0.0003 (1/2979) 0 * * Os_TE_176112 Chr7 22955168 22955296 + ORSgTEMT01700513 151 0.4782 (1414/2957) 1 Intact * Os_TE_176110 Chr7 22954988 22954989 - MERMITEB 1610 0.4483 (1128/2516) 0 * * Os_TE_176099 Chr7 22947155 22947156 + ORSiTERTOOT00296 5553 0.0003 (1/2984) 0 * * Os_TE_176097 Chr7 22946555 22946556 + ORSiTERTOOT00296 5553 0.0003 (1/2968) 0 * Os_TE_176096 Os_TE_176096 Chr7 22946551 22946550 - SC-3_LTR 5748 0.0003 (1/2976) 0 * Os_TE_176097 Os_TE_176066 Chr7 22929853 22929852 - ORSgTEMT02000072 194 0.4017 (1197/2980) 0 * * Os_TE_176065 Chr7 22929713 22929714 + ORSgTEMT02400034 225 0.0739 (221/2992) 0 * Os_TE_176064 Os_TE_176064 Chr7 22929711 22929710 + TYPEM 227 0.0752 (225/2993) 0 * Os_TE_176065 Os_TE_176049 Chr7 22927755 22927754 + TRUNCATOR 2918 0.0107 (32/2996) 0 * Os_TE_176048 Os_TE_176048 Chr7 22927754 22927755 - TRUNCATOR 2918 0.0100 (29/2909) 0 * Os_TE_176049 Os_TE_176044 Chr7 22920170 22920461 + STOWAWAY11_OS 292 0.3172 (883/2784) 1 Intact * Os_TE_176043 Chr7 22919834 22919835 + ORSgTEMT00502094 140 0.7182 (2148/2991) 0 * * Os_TE_176042 Chr7 22919648 22919649 + COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_176041 Os_TE_176041 Chr7 22919644 22919643 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_176042 Os_TE_176031 Chr7 22908376 22908377 - RETRO1_LTR 8314 0.0356 (100/2812) 0 * * Os_TE_176029 Chr7 22908326 22900270 - RIREX_LTR 8828 0.7610 (675/887) 1 Intact Os_TE_176028 Os_TE_176028 Chr7 22900270 22908326 + RIREX_LTR 8828 0.2138 (634/2966) 1 Intact Os_TE_176029 Os_TE_176027 Chr7 22899671 22899672 - COPIA2-LTR_OS 6433 0.0003 (1/2918) 0 * * Os_TE_176023 Chr7 22897492 22897491 - STOWAWAY43_OS 233 0.7214 (2149/2979) 0 * * Os_TE_176021 Chr7 22897232 22896901 + NDNA1TNA_OS 334 0.3071 (887/2888) 1 Intact Os_TE_176018 Os_TE_176018 Chr7 22896898 22897231 + ORSgTEMT00100272 356 0.2954 (881/2982) 1 Intact Os_TE_176021 Os_TE_176008 Chr7 22895347 22895632 + STOWAWAY11_OS 292 0.3234 (857/2650) 1 Intact * Os_TE_176000 Chr7 22894134 22894261 + OSTE18 129 0.7477 (646/864) 1 Intact * Os_TE_175999 Chr7 22893874 22893873 + ORSgTEMT00901485 203 0.0253 (20/790) 0 * Os_TE_175998 Os_TE_175998 Chr7 22893871 22893872 - ORSgTEMT00901723 248 0.8089 (2171/2684) -1 * Os_TE_175999 Os_TE_175995 Chr7 22893253 22892920 + ORSgTEMT00100272 356 0.2060 (603/2927) 1 Intact Os_TE_175992 Os_TE_175992 Chr7 22892916 22893250 - ORSgTEMT00100607 336 0.2177 (640/2940) 1 Intact Os_TE_175995 Os_TE_175980 Chr7 22892079 22891799 - SZ-28LTR 262 0.2877 (852/2961) 1 Intact Os_TE_175979 Os_TE_175979 Chr7 22891799 22892079 + SZ-28LTR 262 0.2958 (882/2982) 1 Intact Os_TE_175980 Os_TE_175971 Chr7 22880190 22880191 - ORSiTETNOOT00134 607 0.0010 (3/2992) 0 * Os_TE_175970 Os_TE_175970 Chr7 22880183 22880182 + TWIF 586 0.0010 (3/2991) 0 * Os_TE_175971 Os_TE_175951 Chr7 22871407 22871406 - MuDR3_OS 8604 0.0010 (3/2993) 0 * Os_TE_175950 Os_TE_175950 Chr7 22871403 22871404 - MuDR3_OS 8604 0.0010 (3/2987) 0 * Os_TE_175951 Os_TE_175935 Chr7 22867209 22867210 + F569 228 0.0027 (8/2966) 0 * Os_TE_175934 Os_TE_175934 Chr7 22867207 22867206 - F569 228 0.0027 (8/2970) 0 * Os_TE_175935 Os_TE_175932 Chr7 22867050 22867051 + RETRO2_LTR 12874 0.0662 (196/2959) 0 * Os_TE_175931 Os_TE_175931 Chr7 22867046 22867045 - RETRO2_LTR 12874 0.0766 (228/2976) 0 * Os_TE_175932 Os_TE_175921 Chr7 22865582 22865583 + RETRO2A_LTR 12895 0.0029 (8/2778) 0 * * Os_TE_175853 Chr7 22827675 22827676 - COPI2_LTR 4733 0.0073 (22/2996) 0 * Os_TE_175852 Os_TE_175852 Chr7 22827671 22827670 + COPI2_LTR 4733 0.0073 (22/2997) 0 * Os_TE_175853 Os_TE_175839 Chr7 22823684 22823683 - RETROSAT2LTR 12796 0.0463 (136/2940) 0 * * Os_TE_175798 Chr7 22814247 22814248 + MuDR2_OS 6770 0.0741 (219/2956) 0 * Os_TE_175797 Os_TE_175797 Chr7 22814238 22814237 - MuDR2_OS 6770 0.0662 (193/2916) 0 * Os_TE_175798 Os_TE_175768 Chr7 22808100 22808101 - ORSiTERTOOT00350 5275 0.0003 (1/2990) 0 * Os_TE_175767 Os_TE_175767 Chr7 22808096 22808095 + ORSiTERTOOT00350 5275 0.0003 (1/2989) 0 * Os_TE_175768 Os_TE_175763 Chr7 22807567 22807568 + SZ-9LTR 965 0.0007 (2/2994) 0 * Os_TE_175762 Os_TE_175762 Chr7 22807563 22807562 - SZ-9LTR 965 0.0007 (2/2992) 0 * Os_TE_175763 Os_TE_175744 Chr7 22799875 22799876 - ORSgTEMT02400179 221 0.0820 (245/2989) 0 * Os_TE_175743 Os_TE_175743 Chr7 22799874 22799873 - TYPEM 227 0.0818 (245/2995) 0 * Os_TE_175744 Os_TE_175731 Chr7 22794017 22794018 - ORSgTEMT01602676 227 0.0007 (2/2974) 0 * * Os_TE_175726 Chr7 22790152 22790151 + STOWAWAY51_OS 246 0.0820 (245/2988) 0 * * Os_TE_175690 Chr7 22778339 22778340 + MPING 430 0.0003 (1/2944) 0 * Os_TE_175689 Os_TE_175689 Chr7 22778337 22778336 - MPING 430 0.0003 (1/2929) 0 * Os_TE_175690 Os_TE_175681 Chr7 22772834 22772835 - RIRE5-LTR_OS 6427 0.7265 (2170/2987) 0 * Os_TE_175680 Os_TE_175680 Chr7 22772829 22772828 + RIRE5-LTR_OS 6427 0.7195 (2121/2948) 0 * Os_TE_175681 Os_TE_175662 Chr7 22771541 22771542 + MUDRN2_OS 756 0.5671 (1661/2929) 0 * Os_TE_175661 Os_TE_175661 Chr7 22771533 22771532 - MUDRN1_OS 764 0.5400 (1505/2787) 0 * Os_TE_175662 Os_TE_175655 Chr7 22763511 22771276 + RIREX_LTR 8828 0.2754 (818/2970) 1 Intact * Os_TE_175653 Chr7 22763424 22763425 - ORSgTETN00200001 10994 0.1569 (463/2951) 0 * Os_TE_175652 Os_TE_175652 Chr7 22763422 22763421 + SPMLIKE 10989 0.1586 (469/2958) 0 * Os_TE_175653 Os_TE_175649 Chr7 22762018 22762019 - RIREX_LTR 8828 0.0003 (1/2996) 0 * Os_TE_175648 Os_TE_175648 Chr7 22762014 22762013 + RIREX_LTR 8828 0.0003 (1/2996) 0 * Os_TE_175649 Os_TE_175637 Chr7 22758783 22758782 - STOWAWAY51_OS 246 0.0137 (41/2986) 0 * * Os_TE_175598 Chr7 22735770 22735769 + ORSgTEMT01601591 242 0.0003 (1/2989) 0 * * Os_TE_175569 Chr7 22731702 22731701 + RIREX_LTR 8828 0.0007 (2/2970) 0 * * Os_TE_175567 Chr7 22731688 22731355 + NDNA1TNA_OS 334 0.2688 (799/2973) 1 Intact Os_TE_175566 Os_TE_175566 Chr7 22731355 22731688 - NDNA1TNA_OS 334 0.2760 (824/2985) 1 Intact Os_TE_175567 Os_TE_175561 Chr7 22728772 22728773 + ORSiTERTOOT00296 5553 0.0003 (1/2989) 0 * Os_TE_175560 Os_TE_175560 Chr7 22728768 22728767 - SC-3_LTR 5748 0.0003 (1/2988) 0 * Os_TE_175561 Os_TE_175555 Chr7 22725491 22725492 - COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_175554 Os_TE_175554 Chr7 22725487 22725486 + COPI2_LTR 4733 0.0003 (1/2997) 0 * Os_TE_175555 Os_TE_175546 Chr7 22723437 22723438 - F569 228 0.0851 (247/2902) 0 * Os_TE_175545 Os_TE_175545 Chr7 22723435 22723434 + F569 228 0.0823 (246/2989) 0 * Os_TE_175546 Os_TE_175541 Chr7 22721111 22721110 + COPIA2-LTR_OS 6433 0.0003 (1/2872) 0 * * Os_TE_175483 Chr7 22699224 22699225 + GYPSY-A_LTR 8951 0.0394 (118/2996) 0 * Os_TE_175482 Os_TE_175482 Chr7 22699220 22699219 - GYPSY-A_LTR 8951 0.0401 (120/2996) 0 * Os_TE_175483 Os_TE_175476 Chr7 22695763 22695343 + ORSgTEMT00300069 394 0.2712 (809/2983) 1 Intact Os_TE_175474 Os_TE_175474 Chr7 22695343 22695757 - ORSgTEMT00300141 415 0.2674 (796/2977) 1 Intact Os_TE_175476 Os_TE_175466 Chr7 22691016 22691017 - SC-3_LTR 5748 0.0033 (10/2987) 0 * Os_TE_175465 Os_TE_175465 Chr7 22691012 22691011 + ORSiTERTOOT00296 5553 0.0030 (9/2989) 0 * Os_TE_175466 Os_TE_175459 Chr7 22686789 22686661 + OSTE18 129 0.2555 (761/2979) 1 Intact Os_TE_175458 Os_TE_175458 Chr7 22686661 22686789 - OSTE18 129 0.2556 (762/2981) 1 Intact Os_TE_175459 Os_TE_175457 Chr7 22686323 22686322 - RPO_OS 1983 0.1621 (485/2992) 0 * * Os_TE_175442 Chr7 22681829 22681830 + ORSiCMCM00100019 2717 0.1617 (483/2987) 0 * Os_TE_175441 Os_TE_175441 Chr7 22681825 22681824 - TRUNCATOR2_LTR 2904 0.1637 (489/2988) 0 * Os_TE_175442 Os_TE_175434 Chr7 22679862 22679863 + NDNA1TNA_OS 334 0.1628 (487/2992) 0 * Os_TE_175433 Os_TE_175433 Chr7 22679860 22679859 - NDNA1TNA_OS 334 0.1645 (492/2991) 0 * Os_TE_175434 Os_TE_175428 Chr7 22679328 22679571 + ORSgTETNOOT00908 242 0.8155 (2440/2992) 1 Intact * Os_TE_175426 Chr7 22679246 22679245 + STOWAWAY51_OS 246 0.0003 (1/2986) 0 * Os_TE_175425 Os_TE_175425 Chr7 22679240 22679241 - STOWAWAY51_OS 246 0.0003 (1/2990) 0 * Os_TE_175426 Os_TE_175424 Chr7 22678734 22678735 + COPIA2-LTR_OS 6433 0.0010 (3/2974) 0 * Os_TE_175423 Os_TE_175423 Chr7 22678730 22678729 - COPIA2-LTR_OS 6433 0.0010 (3/2971) 0 * Os_TE_175424 Os_TE_175415 Chr7 22677730 22677731 + MPING 430 0.0030 (9/2956) 0 * Os_TE_175414 Os_TE_175414 Chr7 22677728 22677727 - MPING 430 0.0030 (9/2964) 0 * Os_TE_175415 Os_TE_175397 Chr7 22665942 22665943 + SC-8_LTR 4951 0.0020 (6/2982) 0 * Os_TE_175396 Os_TE_175396 Chr7 22665938 22665937 - SC-8_LTR 4951 0.0020 (6/2975) 0 * Os_TE_175397 Os_TE_175385 Chr7 22664665 22664666 - MPING 430 0.0003 (1/2993) 0 * Os_TE_175384 Os_TE_175384 Chr7 22664663 22664662 + MPING 430 0.0003 (1/2992) 0 * Os_TE_175385 Os_TE_175381 Chr7 22654408 22654407 + TWIFBIG 3567 0.0306 (89/2912) 0 * * Os_TE_175356 Chr7 22645904 22645903 + TWIFB1 3737 0.0003 (1/2986) 0 * * Os_TE_175355 Chr7 22644396 22644397 - ORSgTERT00200961 124 0.0003 (1/2990) 0 * * Os_TE_175323 Chr7 22627350 22627349 - STOWAWAY51_OS 246 0.0033 (10/2987) 0 * * Os_TE_175320 Chr7 22627063 22627064 + NDNA1TNA_OS 334 0.0321 (96/2988) 0 * * Os_TE_175314 Chr7 22621741 22621740 + ORSgTEMT00101674 340 0.0332 (99/2979) 0 * Os_TE_175313 Os_TE_175313 Chr7 22621740 22621741 + NDNA1TNA_OS 334 0.0332 (99/2984) 0 * Os_TE_175314 Os_TE_175283 Chr7 22610165 22610166 + ORSgTETNOOT01219 231 0.0005 (1/2213) 0 * * Os_TE_175282 Chr7 22610158 22610159 + ORSgTETNOOT02019 240 0.2915 (871/2988) 0 * * Os_TE_175247 Chr7 22605058 22605057 - HARB-1_OS 5166 0.0007 (2/2817) 0 * * Os_TE_175246 Chr7 22604980 22604981 + HARB-1_OS 5166 0.0004 (1/2788) 0 * * Os_TE_175245 Chr7 22604170 22604171 + COPIA2-LTR_OS 6433 0.0007 (2/2990) 0 * Os_TE_175244 Os_TE_175244 Chr7 22604166 22604165 - COPIA2-LTR_OS 6433 0.0007 (2/2992) 0 * Os_TE_175245 Os_TE_175242 Chr7 22603772 22603773 - RIREX_LTR 8828 0.0003 (1/2987) 0 * Os_TE_175241 Os_TE_175241 Chr7 22603768 22603767 + RIREX_LTR 8828 0.0003 (1/2989) 0 * Os_TE_175242 Os_TE_175240 Chr7 22603749 22603750 - COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_175239 Os_TE_175239 Chr7 22603745 22603744 + COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_175240 Os_TE_175238 Chr7 22602598 22602599 - HARB-1_OS 5166 0.0057 (17/2972) 0 * * Os_TE_175236 Chr7 22602541 22602542 - ORSiTETNOOT00134 607 0.0003 (1/2989) 0 * * Os_TE_175223 Chr7 22597079 22595839 - RETRO2_LTR 12874 0.2222 (656/2952) 1 Solo_LTR * Os_TE_175220 Chr7 22594976 22594977 - SC-3_LTR 5748 0.0003 (1/2993) 0 * Os_TE_175219 Os_TE_175219 Chr7 22594972 22594971 + ORSiTERTOOT00296 5553 0.0003 (1/2989) 0 * Os_TE_175220 Os_TE_175162 Chr7 22551670 22551671 - STOWAWAY51_OS 246 0.0125 (37/2970) 0 * * Os_TE_175157 Chr7 22547895 22547896 + ORSiTERTOOT00034 791 0.0003 (1/2990) 0 * Os_TE_175156 Os_TE_175156 Chr7 22547891 22547890 - SZ-22_LTR 4403 0.0003 (1/2992) 0 * Os_TE_175157 Os_TE_175154 Chr7 22545229 22545230 - MPING 430 0.0004 (1/2622) 0 * Os_TE_175153 Os_TE_175153 Chr7 22545227 22545226 + MPING 430 0.0003 (1/2888) 0 * Os_TE_175154 Os_TE_175130 Chr7 22533071 22533072 - ORSgTEMT00900349 250 0.0011 (3/2771) 0 * * Os_TE_175103 Chr7 22530949 22530950 + MPING 430 0.0003 (1/2990) 0 * Os_TE_175102 Os_TE_175102 Chr7 22530947 22530946 - MPING 430 0.0003 (1/2985) 0 * Os_TE_175103 Os_TE_175093 Chr7 22529367 22529368 - ORSgTETN00200001 10994 0.6231 (1804/2895) 0 * Os_TE_175092 Os_TE_175092 Chr7 22529365 22529364 + SPMLIKE 10989 0.6325 (1855/2933) 0 * Os_TE_175093 Os_TE_175080 Chr7 22524997 22524996 + SEVERIN-2 1952 0.0574 (167/2908) 0 * * Os_TE_175079 Chr7 22524992 22524993 - TELIA 141 0.0017 (5/2874) 0 * Os_TE_175078 Os_TE_175078 Chr7 22524984 22524983 + TELIA 141 0.0018 (5/2730) 0 * Os_TE_175079 Os_TE_175071 Chr7 22523686 22523687 - RETRO2_LTR 12874 0.0559 (166/2968) 0 * * Os_TE_175064 Chr7 22519525 22519526 - CRM-LTR_OS 7749 0.0007 (2/2982) 0 * * Os_TE_175054 Chr7 22512538 22512539 + MERMITEB 1610 0.0020 (6/2959) 0 * * Os_TE_175053 Chr7 22510732 22510733 - INDITTO 263 0.0945 (282/2985) 0 * Os_TE_175052 Os_TE_175052 Chr7 22510731 22510730 + INDITTO 263 0.0963 (288/2991) 0 * Os_TE_175053 Os_TE_175049 Chr7 22510289 22510290 - OsSN3 183 0.0008 (2/2578) 0 * * Os_TE_175047 Chr7 22510190 22510191 + SZ-62LTR 3649 0.1042 (287/2753) 0 * Os_TE_175046 Os_TE_175046 Chr7 22510186 22510185 - SZ-62LTR 3649 0.1445 (404/2795) 0 * Os_TE_175047 Os_TE_175007 Chr7 22485246 22485245 + COPIA2-LTR_OS 6433 0.0003 (1/2966) 0 * * Os_TE_175001 Chr7 22483588 22483589 - COPIA2-LTR_OS 6433 0.0007 (2/2978) 0 * Os_TE_175000 Os_TE_175000 Chr7 22483584 22483583 + COPIA2-LTR_OS 6433 0.0007 (2/2992) 0 * Os_TE_175001 Os_TE_174996 Chr7 22482105 22482104 + ORSgTETNOOT00908 242 0.0886 (263/2970) 0 * * Os_TE_174995 Chr7 22481854 22478364 - GYPSY-A_LTR 8951 0.0443 (131/2956) 1 Solo_LTR Os_TE_174994 Os_TE_174994 Chr7 22478364 22481854 + GYPSY-A_LTR 8951 0.0432 (128/2965) 1 Solo_LTR Os_TE_174995 Os_TE_174982 Chr7 22477461 22477462 + RETRO1_LTR 8314 0.0017 (3/1740) 0 * * Os_TE_174963 Chr7 22469297 22462644 + RIREX_LTR 8828 0.1052 (310/2946) 1 Intact Os_TE_174962 Os_TE_174962 Chr7 22462644 22469297 - RIREX_LTR 8828 0.1047 (309/2951) 1 Intact Os_TE_174963 Os_TE_174959 Chr7 22461983 22462470 + OSTE20 496 0.0435 (129/2965) 1 Intact * Os_TE_174958 Chr7 22461965 22461396 + SZ-33LTR 575 0.0965 (137/1420) 1 Intact * Os_TE_174942 Chr7 22455712 22455374 + ORSgTEMT00100531 325 0.3115 (859/2758) 1 Intact Os_TE_174940 Os_TE_174940 Chr7 22451019 22455705 + NDNA2TNA_OS 346 0.2874 (861/2996) 1 Intact Os_TE_174942 Os_TE_174929 Chr7 22447490 22447491 + RIREX_LTR 8828 0.0867 (259/2987) 0 * Os_TE_174928 Os_TE_174928 Chr7 22447486 22447485 - RIREX_LTR 8828 0.0886 (265/2991) 0 * Os_TE_174929 Os_TE_174926 Chr7 22446748 22446747 - RIRE3A_LTR 10580 0.0107 (9/841) -1 * * Os_TE_174924 Chr7 22445590 22445591 - RIREX_LTR 8828 0.0003 (1/2975) 0 * * Os_TE_174922 Chr7 22445186 22445187 - RETROSAT5_LTR 13878 0.0017 (5/2991) 0 * * Os_TE_174916 Chr7 22441687 22429674 - ORSgTETN00200001 10994 0.0381 (112/2943) 1 Intact Os_TE_174913 Os_TE_174913 Chr7 22429674 22441684 + SPMLIKE 10989 0.0433 (128/2956) 1 Intact Os_TE_174916 Os_TE_174897 Chr7 22424394 22424393 - ORSgTETNOOT02143 185 0.0003 (1/2932) 0 * * Os_TE_174893 Chr7 22422669 22422670 - SZLTR 1249 0.0028 (3/1061) 0 * * Os_TE_174880 Chr7 22419861 22419860 + ORSgTEMT00101674 340 0.0454 (136/2995) 0 * Os_TE_174879 Os_TE_174879 Chr7 22419855 22419856 + NDNA1TNA_OS 334 0.0448 (134/2993) 0 * Os_TE_174880 Os_TE_174877 Chr7 22419105 22419106 + COPIA2-LTR_OS 6433 0.0007 (2/2992) 0 * Os_TE_174876 Os_TE_174876 Chr7 22419101 22419100 - COPIA2-LTR_OS 6433 0.0007 (2/2992) 0 * Os_TE_174877 Os_TE_174807 Chr7 22396152 22396153 - ORSgTERT00200916 5990 0.2031 (608/2994) 0 * * Os_TE_174718 Chr7 22378120 22378119 + RETRO2_LTR 12874 0.0010 (3/2987) 0 * Os_TE_174717 Os_TE_174717 Chr7 22378119 22378120 - RETRO2_LTR 12874 0.0010 (3/2987) 0 * Os_TE_174718 Os_TE_174710 Chr7 22374756 22374755 - COPI2_LTR 4733 0.0003 (1/2982) 0 * * Os_TE_174694 Chr7 22369388 22369389 + ORSgTETNOOT00032 218 0.0862 (258/2992) 0 * * Os_TE_174664 Chr7 22360547 22360546 - STOWAWAY51_OS 246 0.0097 (29/2997) 0 * Os_TE_174663 Os_TE_174663 Chr7 22360544 22360545 - STOWAWAY51_OS 246 0.0090 (27/2997) 0 * Os_TE_174664 Os_TE_174648 Chr7 22357885 22357886 - INDITTO 263 0.0003 (1/2995) 0 * Os_TE_174647 Os_TE_174647 Chr7 22357883 22357882 + INDITTO 263 0.0003 (1/2988) 0 * Os_TE_174648 Os_TE_174642 Chr7 22353273 22353274 + MPING 430 0.0003 (1/2990) 0 * * Os_TE_174637 Chr7 22348638 22348639 + TELIA 141 0.0013 (4/2995) 0 * Os_TE_174636 Os_TE_174636 Chr7 22348630 22348629 + TELIA 141 0.0013 (4/2995) 0 * Os_TE_174637 Os_TE_174589 Chr7 22330341 22330342 + ORSgTERT00200313 431 0.2282 (679/2975) 0 * * Os_TE_174586 Chr7 22330123 22330122 - SZ-22_LTR 4403 0.1481 (441/2977) 0 * * Os_TE_174553 Chr7 22314990 22314991 + SZ-67LTR 1540 0.0117 (35/2990) 0 * Os_TE_174552 Os_TE_174552 Chr7 22314986 22314985 - SZ-67LTR 1540 0.0130 (39/2992) 0 * Os_TE_174553 Os_TE_174551 Chr7 22314865 22314866 + ORSiTERTOOT00226 792 0.0003 (1/2987) 0 * * Os_TE_174550 Chr7 22314239 22314240 - COPIA2-LTR_OS 6433 0.0712 (213/2991) 0 * * Os_TE_174547 Chr7 22313866 22313867 + AMYLTP 383 0.3741 (1073/2868) 0 * Os_TE_174546 Os_TE_174546 Chr7 22313858 22313857 - AMYLTP 383 0.3959 (1169/2953) 0 * Os_TE_174547 Os_TE_174541 Chr7 22311435 22311436 - SC-8_LTR 4951 0.0007 (2/2997) 0 * Os_TE_174540 Os_TE_174540 Chr7 22311431 22311430 + ORSiTERTOOT00381 4988 0.0007 (2/2997) 0 * Os_TE_174541 Os_TE_174530 Chr7 22303603 22303602 - RIRE3_LTR 12054 0.0020 (6/2967) 0 * * Os_TE_174518 Chr7 22296287 22296288 + TWIFB1 3737 0.0003 (1/2935) 0 * * Os_TE_174498 Chr7 22276026 22276025 + ORSgTEMT00101674 340 0.0023 (7/2989) 0 * Os_TE_174497 Os_TE_174497 Chr7 22276025 22276026 + NDNA1TNA_OS 334 0.0023 (7/2987) 0 * Os_TE_174498 Os_TE_174486 Chr7 22273674 22273675 + ORSgTETNOOT01834 251 0.0136 (37/2718) 0 * Os_TE_174485 Os_TE_174485 Chr7 22273672 22273671 - ORSgTETNOOT00754 253 0.0132 (36/2735) 0 * Os_TE_174486 Os_TE_174483 Chr7 22270300 22270301 - ORSgTEMT02000041 194 0.4016 (1188/2958) 0 * * Os_TE_174480 Chr7 22268104 22268105 + COPI2_LTR 4733 0.0007 (2/2987) 0 * Os_TE_174479 Os_TE_174479 Chr7 22268100 22268099 - COPI2_LTR 4733 0.0010 (3/2987) 0 * Os_TE_174480 Os_TE_174473 Chr7 22264796 22264795 + ORSgTEMT02400206 225 0.0157 (47/2988) 0 * Os_TE_174472 Os_TE_174472 Chr7 22264795 22264796 - TYPEM 227 0.0157 (47/2985) 0 * Os_TE_174473 Os_TE_174467 Chr7 22263951 22262544 - MUDRN3_OS 903 0.1599 (369/2307) -1 Intact Os_TE_174464 Os_TE_174464 Chr7 22262539 22263951 - MUDRN3_OS 903 0.3325 (951/2860) 1 Intact Os_TE_174467 Os_TE_174458 Chr7 22260704 22260703 + STOWAWAY51_OS 246 0.0007 (2/2992) 0 * Os_TE_174457 Os_TE_174457 Chr7 22260698 22260699 - STOWAWAY51_OS 246 0.0007 (2/2983) 0 * Os_TE_174458 Os_TE_174446 Chr7 22256053 22256054 + ORSgTEMT05000092 279 0.0003 (1/2951) 0 * Os_TE_174445 Os_TE_174445 Chr7 22256052 22256051 - SUSU 279 0.0003 (1/2940) 0 * Os_TE_174446 Os_TE_174424 Chr7 22244928 22244927 - SZ-48LTR 3632 0.1711 (512/2992) 0 * * Os_TE_174421 Chr7 22243932 22243933 + CASTAWAY 364 0.6210 (1850/2979) 0 * * Os_TE_174419 Chr7 22240020 22240021 - OSTE17 734 0.0010 (3/2990) 0 * Os_TE_174418 Os_TE_174418 Chr7 22240012 22240011 - OSTE17 734 0.0010 (3/2990) 0 * Os_TE_174419 Os_TE_174398 Chr7 22228319 22228080 + ORSgTETNOOT00054 239 0.3467 (1039/2997) 1 Intact Os_TE_174397 Os_TE_174397 Chr7 22228081 22228321 - ORSgTETNOOT02565 240 0.3458 (1037/2999) 0.82 Intact Os_TE_174398 Os_TE_174396 Chr7 22228019 22228020 + SZ-55_LTR 10318 0.0007 (2/2995) 0 * Os_TE_174395 Os_TE_174395 Chr7 22228015 22228014 - SZ-55_LTR 10318 0.0007 (2/2999) 0 * Os_TE_174396 Os_TE_174390 Chr7 22224237 22224238 + CASGRANDA 465 0.0165 (49/2961) 0 * * Os_TE_174382 Chr7 22217408 22217409 - RIRE3_LTR 12054 0.0791 (227/2870) 0 * * Os_TE_174354 Chr7 22211066 22211065 + ORSgTERTOOT00009 12852 0.0148 (44/2981) 0 * * Os_TE_174288 Chr7 22185092 22185093 - COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_174287 Os_TE_174287 Chr7 22185088 22185087 + COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_174288 Os_TE_174285 Chr7 22184737 22184738 - ORSgTEMT02400179 221 0.0003 (1/2986) 0 * Os_TE_174284 Os_TE_174284 Chr7 22184736 22184735 - TYPEM 227 0.0003 (1/2985) 0 * Os_TE_174285 Os_TE_174277 Chr7 22180005 22180006 - RETROSAT2LTR 12796 0.0003 (1/2957) 0 * * Os_TE_174248 Chr7 22167638 22167639 + RIREX_LTR 8828 0.0053 (16/2996) 0 * Os_TE_174247 Os_TE_174247 Chr7 22167634 22167633 - RIREX_LTR 8828 0.0053 (16/2995) 0 * Os_TE_174248 Os_TE_174240 Chr7 22159596 22159597 + MPING 430 0.0003 (1/2986) 0 * Os_TE_174239 Os_TE_174239 Chr7 22159594 22159593 - MPING 430 0.0003 (1/2990) 0 * Os_TE_174240 Os_TE_174214 Chr7 22150906 22150907 - ORSgTEMT01601834 234 0.0017 (5/2998) 0 * * Os_TE_174183 Chr7 22145744 22145743 - STOWAWAY51_OS 246 0.0003 (1/2980) 0 * Os_TE_174182 Os_TE_174182 Chr7 22145738 22145739 + STOWAWAY51_OS 246 0.0003 (1/2888) 0 * Os_TE_174183 Os_TE_174178 Chr7 22144537 22144538 + ORSiOTOT00000037 220 0.0678 (203/2992) 0 * * Os_TE_174161 Chr7 22135197 22130967 - MuDR3_OS 8604 0.3672 (1073/2922) 1 Intact Os_TE_174158 Os_TE_174158 Chr7 22130963 22135197 + MuDR3_OS 8604 0.3699 (1085/2933) 1 Intact Os_TE_174161 Os_TE_174118 Chr7 22107797 22107798 + ORSiTERTOOT00226 792 0.0014 (1/704) 0 * * Os_TE_174103 Chr7 22100933 22100934 + TRUNCATOR 2918 0.0301 (89/2956) 0 * * Os_TE_174047 Chr7 22081397 22081398 - SZ-35LTR 3853 0.0955 (285/2985) 0 * Os_TE_174046 Os_TE_174046 Chr7 22081393 22081392 + RETROSAT4_LTR 13504 0.0941 (281/2986) 0 * Os_TE_174047 Os_TE_174017 Chr7 22072916 22072577 - ORSgTEMT00100242 351 0.6442 (1921/2982) 1 Intact Os_TE_174016 Os_TE_174016 Chr7 22072577 22072914 + ORSgTEMT00100428 339 0.6368 (1869/2935) 1 Intact Os_TE_174017 Os_TE_173998 Chr7 22068226 22068227 + NDNA1TNA_OS 334 0.0141 (42/2989) 0 * Os_TE_173997 Os_TE_173997 Chr7 22068225 22068224 - ORSgTEMT00100582 334 0.0144 (43/2988) 0 * Os_TE_173998 Os_TE_173995 Chr7 22067000 22067001 - RIREX_LTR 8828 0.0037 (11/2997) 0 * * Os_TE_173985 Chr7 22063850 22063851 + MERMITEA 1710 0.1156 (338/2924) 0 * Os_TE_173984 Os_TE_173984 Chr7 22063842 22063841 + MERMITEA 1710 0.1193 (349/2926) 0 * Os_TE_173985 Os_TE_173955 Chr7 22058520 22058519 + STOWAWAY51_OS 246 0.0003 (1/2988) 0 * * Os_TE_173938 Chr7 22045611 22045612 + MPING 430 0.0003 (1/2905) 0 * Os_TE_173937 Os_TE_173937 Chr7 22045609 22045608 - MPING 430 0.0003 (1/2912) 0 * Os_TE_173938 Os_TE_173936 Chr7 22044966 22044967 + MUDRN1_OS 764 0.0405 (118/2910) 0 * Os_TE_173935 Os_TE_173935 Chr7 22044958 22044957 - MUDRN1_OS 764 0.0330 (96/2906) 0 * Os_TE_173936 Os_TE_173932 Chr7 22044187 22044186 + MUDR_N7_OS 1283 0.0692 (207/2992) 0 * * Os_TE_173923 Chr7 22040981 22040982 + NDNA1TNA_OS 334 0.1374 (411/2992) 0 * Os_TE_173922 Os_TE_173922 Chr7 22040979 22040978 - NDNA1TNA_OS 334 0.1374 (411/2991) 0 * Os_TE_173923 Os_TE_173888 Chr7 22022848 22022847 + ORSgTETNOOT00908 242 0.0317 (93/2932) 0 * * Os_TE_173879 Chr7 22022016 22022017 - ORSgTEMT00900145 249 0.0019 (5/2593) 0 * * Os_TE_173878 Chr7 22021887 22021692 + ORSgTEMT02000020 195 0.8788 (2626/2988) 1 Intact * Os_TE_173876 Chr7 22021285 22021286 + CACTA-M 1129 0.0661 (195/2951) 0 * * Os_TE_173875 Chr7 22021204 22021203 - STOWAWAY45_OS 266 0.0603 (179/2969) 0 * Os_TE_173874 Os_TE_173874 Chr7 22021201 22021202 + STOWAWAY45_OS 266 0.0639 (176/2756) 0 * Os_TE_173875 Os_TE_173851 Chr7 22013494 22013493 - STOWAWAY51_OS 246 0.0007 (2/2993) 0 * Os_TE_173850 Os_TE_173850 Chr7 22013488 22013489 + STOWAWAY51_OS 246 0.0010 (3/2978) 0 * Os_TE_173851 Os_TE_173846 Chr7 22012501 22012502 + COPIA2-LTR_OS 6433 0.0003 (1/2972) 0 * * Os_TE_173839 Chr7 22005013 22005014 + RETROSAT2LTR 12796 0.2239 (666/2975) 0 * Os_TE_173838 Os_TE_173838 Chr7 22005011 22005010 - RETROSAT2LTR 12796 0.0142 (34/2388) 0 * Os_TE_173839 Os_TE_173830 Chr7 22002473 22002474 + SINE03_OS 360 0.0007 (2/2775) 0 * * Os_TE_173821 Chr7 21997691 21993287 + SC-7_LTR 4431 0.3059 (905/2958) 1 Intact Os_TE_173820 Os_TE_173820 Chr7 21993287 21997691 - SC-7_LTR 4431 0.3115 (927/2976) 1 Intact Os_TE_173821 Os_TE_173768 Chr7 21969673 21969674 + ORSgTETNOOT00908 242 0.0026 (7/2672) 0 * * Os_TE_173761 Chr7 21962419 21962420 - ORSgTEMT01601208 238 0.0588 (172/2927) 0 * * Os_TE_173734 Chr7 21950784 21950783 + ORSgTEMT04800085 366 0.0615 (179/2911) 0 * * Os_TE_173717 Chr7 21938247 21950709 - RETRO2_LTR 12874 0.4229 (1247/2949) 1 Intact * Os_TE_173716 Chr7 21937804 21937803 + ORSgTEMT00500476 150 0.0598 (178/2978) 0 * * Os_TE_173704 Chr7 21933902 21934004 + STOWAWAY50_OS 174 0.8730 (1258/1441) 1 Intact * Os_TE_173703 Chr7 21933615 21933616 + ORSgTEMT00100694 349 0.1324 (191/1443) 0 * * Os_TE_173696 Chr7 21932063 21933430 + SZ-44LTR 1408 0.8762 (1288/1470) 1 Intact * Os_TE_173694 Chr7 21930455 21930456 - SZ-48LTR 3632 0.5655 (742/1312) -1 * * Os_TE_173687 Chr7 21927369 21927368 + ORSgTEMT00501279 126 0.0600 (179/2985) 0 * * Os_TE_173685 Chr7 21924154 21924155 - SZ-62LTR 3649 0.0632 (187/2958) 0 * * Os_TE_173675 Chr7 21921649 21921648 - HATOS1 3488 0.0851 (254/2984) 0 * * Os_TE_173672 Chr7 21920541 21920542 - ORSgTEMT02400179 221 0.0025 (7/2826) 0 * Os_TE_173671 Os_TE_173671 Chr7 21920540 21920539 - TYPEM 227 0.0023 (7/2990) 0 * Os_TE_173672 Os_TE_173669 Chr7 21918977 21918739 + ORSgTEMT01602181 239 0.3901 (1122/2876) 1 Intact * Os_TE_173666 Chr7 21918432 21918433 + ORSgTEMT01601122 212 0.0014 (4/2794) 0 * * Os_TE_173661 Chr7 21916639 21916638 + DS-RICE4N 715 0.6128 (1757/2867) 0 * * Os_TE_173652 Chr7 21913989 21914344 - ORSgTEMT00100908 341 0.4879 (1253/2568) 1 Intact * Os_TE_173651 Chr7 21913433 21913434 + COPIA2-LTR_OS 6433 0.0008 (1/1276) 0 * Os_TE_173650 Os_TE_173650 Chr7 21913429 21913428 - COPIA2-LTR_OS 6433 0.0008 (1/1281) 0 * Os_TE_173651 Os_TE_173644 Chr7 21909780 21909779 + ORSgTEMT00600171 361 0.0021 (6/2914) 0 * * Os_TE_173642 Chr7 21908519 21908518 + NDNA1TNA_OS 334 0.0003 (1/2984) 0 * * Os_TE_173641 Chr7 21908121 21908122 + ORSgTEMT03000039 377 0.0031 (4/1281) 0 * Os_TE_173640 Os_TE_173640 Chr7 21908112 21908111 - ORSgTEMT03000007 372 0.0039 (5/1281) 0 * Os_TE_173641 Os_TE_173616 Chr7 21896069 21896068 + AMYLTP 383 0.0003 (1/2988) 0 * * Os_TE_173615 Chr7 21895116 21895117 - SC-8_LTR 4951 0.0003 (1/2986) 0 * Os_TE_173614 Os_TE_173614 Chr7 21895112 21895111 - SC-8_LTR 4951 0.0003 (1/2988) 0 * Os_TE_173615 Os_TE_173595 Chr7 21886562 21887822 + RETRO2_LTR 12874 0.4545 (1184/2605) 1 Solo_LTR * Os_TE_173581 Chr7 21885354 21885353 + MUDR1_OS 8052 0.4723 (1355/2869) 0 * * Os_TE_173578 Chr7 21884418 21884745 - NDNA2TNA_OS 346 0.8639 (2507/2902) 1 Intact * Os_TE_173577 Chr7 21883715 21883457 + FOCUS 257 0.4071 (1207/2965) 1 Intact Os_TE_173576 Os_TE_173576 Chr7 21883457 21883715 - FOCUS 257 0.4147 (1233/2973) 1 Intact Os_TE_173577 Os_TE_173575 Chr7 21883419 21883420 + MPING 430 0.0007 (2/2992) 0 * Os_TE_173574 Os_TE_173574 Chr7 21883417 21883416 - MPING 430 0.0007 (2/2695) 0 * Os_TE_173575 Os_TE_173572 Chr7 21881421 21881422 - STOLAB 312 0.0014 (4/2925) 0 * * Os_TE_173571 Chr7 21881015 21881014 - F118 179 0.0014 (2/1449) -1 * * Os_TE_173569 Chr7 21879933 21879934 + ORSiTERTOOT00381 4988 0.0017 (5/2987) 0 * Os_TE_173568 Os_TE_173568 Chr7 21879929 21879928 - SC-8_LTR 4951 0.0017 (5/2983) 0 * Os_TE_173569 Os_TE_173543 Chr7 21873112 21873111 - ATLANTYS-LTR_OS 13740 0.0017 (5/2988) 0 * * Os_TE_173513 Chr7 21860911 21860910 - CACTA-I 1124 0.2232 (659/2953) 0 * * Os_TE_173501 Chr7 21854133 21854134 + SINE03_OS 360 0.1028 (225/2189) 0 * * Os_TE_173493 Chr7 21851964 21851963 - ORSgTEMT01600639 228 0.3534 (1039/2940) 0 * * Os_TE_173489 Chr7 21850567 21850568 - RETROFIT_LTR 4866 0.0003 (1/2981) 0 * * Os_TE_173484 Chr7 21846302 21846301 + STOWAWAY9_OS 235 0.0104 (31/2989) 0 * * Os_TE_173464 Chr7 21840269 21840268 - SZ-35LTR 3853 0.0084 (25/2970) 0 * * Os_TE_173455 Chr7 21835434 21835435 - COPIA2-LTR_OS 6433 0.0004 (1/2813) 0 * * Os_TE_173442 Chr7 21831806 21831807 + COPIA2-LTR_OS 6433 0.0017 (5/2986) 0 * Os_TE_173441 Os_TE_173441 Chr7 21831802 21831801 - COPIA2-LTR_OS 6433 0.0017 (5/2983) 0 * Os_TE_173442 Os_TE_173440 Chr7 21831791 21831792 + ORSiTERTOOT00226 792 0.0007 (2/2988) 0 * Os_TE_173439 Os_TE_173439 Chr7 21831787 21831786 - SZ-22_LTR 4403 0.0007 (2/2989) 0 * Os_TE_173440 Os_TE_173422 Chr7 21824132 21824133 - SC-3_LTR 5748 0.0080 (24/2994) 0 * * Os_TE_173392 Chr7 21811428 21811429 + COPIA2-LTR_OS 6433 0.0007 (2/2997) 0 * Os_TE_173391 Os_TE_173391 Chr7 21811424 21811423 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_173392 Os_TE_173365 Chr7 21787198 21787197 - TRUNCATOR2_LTR 2904 0.0003 (1/2989) 0 * * Os_TE_173353 Chr7 21782987 21782988 - TNR8-1 418 0.0004 (1/2580) 0 * Os_TE_173352 Os_TE_173352 Chr7 21782984 21782983 - ORSgTEMT01800105 452 0.0004 (1/2464) 0 * Os_TE_173353 Os_TE_173351 Chr7 21782630 21782629 + GYPSO_LTR 9828 0.0011 (3/2807) 0 * * Os_TE_173350 Chr7 21779727 21779728 + ORSiTERTOOT00226 792 0.0003 (1/2895) 0 * * Os_TE_173343 Chr7 21776916 21776917 - MPING 430 0.0003 (1/2873) 0 * Os_TE_173342 Os_TE_173342 Chr7 21776914 21776913 + MPING 430 0.0004 (1/2855) 0 * Os_TE_173343 Os_TE_173336 Chr7 21773326 21773327 - TYPEM 227 0.0180 (40/2223) 0 * Os_TE_173335 Os_TE_173335 Chr7 21773325 21773324 - ORSgTEMT02400179 221 0.0172 (38/2208) 0 * Os_TE_173336 Os_TE_173316 Chr7 21769358 21768056 - ORSgTERT00100363 6446 0.4281 (1144/2672) 1 Intact Os_TE_173315 Os_TE_173315 Chr7 21768056 21769364 - COPIA2-LTR_OS 6433 0.3898 (1123/2881) 1 Intact Os_TE_173316 Os_TE_173284 Chr7 21762927 21762926 + COPI2_LTR 4733 0.0341 (102/2988) 0 * * Os_TE_173276 Chr7 21757809 21757547 + INDITTO 263 0.3695 (1107/2996) 1 Intact Os_TE_173275 Os_TE_173275 Chr7 21757547 21757809 - INDITTO 263 0.3681 (1099/2986) 1 Intact Os_TE_173276 Os_TE_173260 Chr7 21745523 21745524 + TRUNCATOR2_LTR 2904 0.5956 (1772/2975) 0 * * Os_TE_173243 Chr7 21734897 21734896 + COPI2_LTR 4733 0.0003 (1/2985) 0 * * Os_TE_173227 Chr7 21727931 21727932 + COPIA2-LTR_OS 6433 0.0010 (3/2988) 0 * Os_TE_173226 Os_TE_173226 Chr7 21727927 21727926 - COPIA2-LTR_OS 6433 0.0010 (3/2990) 0 * Os_TE_173227 Os_TE_173224 Chr7 21727767 21727768 - STOWAWAY43_OS 233 0.6188 (1849/2988) 0 * * Os_TE_173223 Chr7 21727684 21727685 - TEMPINDAS 4259 0.0791 (237/2997) 0 * * Os_TE_173221 Chr7 21727435 21727436 + RETRO2_LTR 12874 0.0187 (56/2997) 0 * Os_TE_173220 Os_TE_173220 Chr7 21727431 21727430 - RETRO2_LTR 12874 0.0187 (56/2998) 0 * Os_TE_173221 Os_TE_173216 Chr7 21725449 21725448 - COPI2_LTR 4733 0.0010 (3/2999) 0 * * Os_TE_173210 Chr7 21720498 21720499 - TRUNCATOR 2918 0.0013 (4/2983) 0 * * Os_TE_173209 Chr7 21720352 21720353 - SZ-48LTR 3632 0.5729 (1709/2983) 0 * Os_TE_173208 Os_TE_173208 Chr7 21720348 21720347 + SZ-48LTR 3632 0.5727 (1706/2979) 0 * Os_TE_173209 Os_TE_173207 Chr7 21719457 21719458 + OSTE33 1012 0.0201 (60/2982) 0 * Os_TE_173206 Os_TE_173206 Chr7 21719448 21719447 + OSTE33 1012 0.0201 (60/2983) 0 * Os_TE_173207 Os_TE_173199 Chr7 21715525 21715373 - ORSgTEMT01701348 105 0.4598 (1357/2951) 1 Intact Os_TE_173198 Os_TE_173198 Chr7 21715369 21715521 + ORSgTEMT01700791 134 0.4488 (1333/2970) 1 Intact Os_TE_173199 Os_TE_173196 Chr7 21714123 21713911 + ORSgTEMT01601122 212 0.4475 (1329/2970) 1 Intact * Os_TE_173192 Chr7 21711640 21711639 + SPMLIKE 10989 0.0117 (34/2907) 0 * * Os_TE_173190 Chr7 21711149 21711400 - SINE9_OS 293 0.4538 (1301/2867) 1 Intact * Os_TE_173188 Chr7 21707405 21707406 + ORSiCMCM00100019 2717 0.0004 (1/2772) 0 * * Os_TE_173187 Chr7 21707350 21707351 + TYPEU4 402 0.0121 (33/2731) 0 * Os_TE_173186 Os_TE_173186 Chr7 21707342 21707341 - TYPEU1 380 0.0152 (44/2896) 0 * Os_TE_173187 Os_TE_173155 Chr7 21697191 21697052 - ORSgTETNOOT00623 140 0.4535 (1317/2904) 1 Intact Os_TE_173152 Os_TE_173152 Chr7 21697049 21697182 + ORSgTEMT00500852 140 0.4507 (1334/2960) 1 Intact Os_TE_173155 Os_TE_173149 Chr7 21696689 21696557 + ORSgTEMT01701200 154 0.4481 (1334/2977) 1 Intact * Os_TE_173146 Chr7 21692382 21692383 - STOWAWAY21_OS 243 0.0012 (2/1689) 0 * * Os_TE_173141 Chr7 21687029 21687028 + SPMLIKE 10989 0.0003 (1/2956) 0 * * Os_TE_173140 Chr7 21686120 21686121 + TWIFBIG 3567 0.0366 (109/2979) 0 * Os_TE_173139 Os_TE_173139 Chr7 21686113 21686112 - ORSiTETNOOT00216 3569 0.0376 (112/2982) 0 * Os_TE_173140 Os_TE_173130 Chr7 21679313 21680278 - SZ-9LTR 965 0.3354 (991/2955) 1 Intact * Os_TE_173128 Chr7 21678354 21678355 + MERMITEB 1610 0.5394 (1580/2929) 0 * Os_TE_173127 Os_TE_173127 Chr7 21678348 21678347 - MERMITE18B 1306 0.5653 (1676/2965) 0 * Os_TE_173128 Os_TE_173111 Chr7 21667901 21668057 + ORSgTEMT00501267 147 0.3314 (986/2975) 1 Intact * Os_TE_173110 Chr7 21667826 21667577 - ORSgTEMT00900349 250 0.3384 (998/2949) 1 Intact Os_TE_173105 Os_TE_173105 Chr7 21667586 21667824 + ORSgTEMT00900079 241 0.3445 (997/2894) 1 Intact Os_TE_173110 Os_TE_173099 Chr7 21667114 21667509 + ORSgTEMT00300069 394 0.3443 (975/2832) 1 Intact * Os_TE_173098 Chr7 21666945 21666944 - OSTE33 1012 0.0400 (119/2978) 0 * * Os_TE_173094 Chr7 21666127 21666126 - ORSgTEMT01400022 212 0.0407 (122/2994) 0 * * Os_TE_173092 Chr7 21665791 21665792 - INDITTO 263 0.0003 (1/2997) 0 * Os_TE_173091 Os_TE_173091 Chr7 21665789 21665788 + INDITTO 263 0.0003 (1/2998) 0 * Os_TE_173092 Os_TE_173025 Chr7 21644592 21644591 + MDM2 312 0.0003 (1/2979) 0 * * Os_TE_173017 Chr7 21639674 21638725 - ORSiTEMT01300001 950 0.3614 (1040/2878) 1 Intact Os_TE_173015 Os_TE_173015 Chr7 21638725 21639673 + KRISPIE 956 0.3602 (1031/2862) 1 Intact Os_TE_173017 Os_TE_173013 Chr7 21638305 21638304 - TYPEM 227 0.0003 (1/2963) 0 * * Os_TE_173008 Chr7 21637379 21637380 - RETRO2A_LTR 12895 0.0007 (2/2976) 0 * Os_TE_173007 Os_TE_173007 Chr7 21637375 21637374 + RETRO1_LTR 8314 0.0007 (2/2973) 0 * Os_TE_173008 Os_TE_172994 Chr7 21625277 21625278 - RIREX_LTR 8828 0.0007 (2/2993) 0 * Os_TE_172993 Os_TE_172993 Chr7 21625273 21625272 + RIREX_LTR 8828 0.0007 (2/2992) 0 * Os_TE_172994 Os_TE_172989 Chr7 21622331 21622332 + ORSiTERTOOT00296 5553 0.0013 (4/2980) 0 * Os_TE_172988 Os_TE_172988 Chr7 21622327 21622326 - SC-3_LTR 5748 0.0010 (3/2976) 0 * Os_TE_172989 Os_TE_172982 Chr7 21613214 21613213 - ORSiTERT00100062 5674 0.0010 (3/2963) 0 * * Os_TE_172973 Chr7 21612677 21612678 - ORSgTETNOOT00053 263 0.0003 (1/2976) 0 * Os_TE_172972 Os_TE_172972 Chr7 21612675 21612674 - INDITTO 263 0.0003 (1/2980) 0 * Os_TE_172973 Os_TE_172971 Chr7 21612057 21612056 - ORSgTEMT00900099 250 0.5891 (1617/2745) 0 * * Os_TE_172968 Chr7 21611674 21611673 - SZ-33LTR 575 0.0857 (254/2964) 0 * * Os_TE_172951 Chr7 21608836 21608837 + MPING 430 0.0003 (1/2968) 0 * * Os_TE_172946 Chr7 21603510 21603509 + ORSgTETNOOT00908 242 0.0017 (5/2991) 0 * * Os_TE_172940 Chr7 21603109 21603110 - INDITTO 263 0.0014 (4/2851) 0 * * Os_TE_172924 Chr7 21601725 21601726 - ORSgTEMT00501711 149 0.0196 (55/2807) 0 * * Os_TE_172922 Chr7 21601675 21601674 + STOWAWAY51_OS 246 0.0004 (1/2816) 0 * Os_TE_172921 Os_TE_172921 Chr7 21601669 21601670 - STOWAWAY51_OS 246 0.0003 (1/2975) 0 * Os_TE_172922 Os_TE_172916 Chr7 21601324 21600979 - NDNA2TNA_OS 346 0.4210 (1157/2748) 1 Intact Os_TE_172912 Os_TE_172912 Chr7 21600978 21601324 + NDNA2TNA_OS 346 0.4018 (1107/2755) 1 Intact Os_TE_172916 Os_TE_172911 Chr7 21600925 21600926 - MERMITED 1572 0.0831 (242/2911) 0 * * Os_TE_172909 Chr7 21599769 21599770 - SC-3_LTR 5748 0.0017 (5/2991) 0 * Os_TE_172908 Os_TE_172908 Chr7 21599765 21599764 + ORSiTERTOOT00296 5553 0.0017 (5/2990) 0 * Os_TE_172909 Os_TE_172893 Chr7 21591791 21591792 - NDNA1TNA_OS 334 0.0112 (33/2956) 0 * * Os_TE_172892 Chr7 21591614 21591613 - NDNA1TNA_OS 334 0.0011 (3/2844) 0 * * Os_TE_172891 Chr7 21591602 21591603 + ORSgTEMT01400009 212 0.0483 (134/2774) 0 * * Os_TE_172889 Chr7 21591479 21591478 + ORSgTETNOOT01668 244 0.0442 (121/2739) 0 * * Os_TE_172876 Chr7 21585210 21585209 - ORSgTEMT01601208 238 0.0017 (5/2879) 0 * Os_TE_172875 Os_TE_172875 Chr7 21585207 21585208 - ORSgTEMT01601208 238 0.0027 (4/1484) 0 * Os_TE_172876 Os_TE_172864 Chr7 21582158 21582159 + HARB-1_OS 5166 0.0003 (1/2932) 0 * * Os_TE_172861 Chr7 21579344 21579345 - ORSiTETNOOT00216 3569 0.0003 (1/2992) 0 * Os_TE_172860 Os_TE_172860 Chr7 21579337 21579336 + TWIFBIG 3567 0.0003 (1/2995) 0 * Os_TE_172861 Os_TE_172824 Chr7 21539150 21539151 - MERMITE18B 1306 0.0070 (21/2990) 0 * * Os_TE_172810 Chr7 21527088 21527089 - COPIA2-LTR_OS 6433 0.0009 (1/1113) 0 * * Os_TE_172808 Chr7 21526993 21526994 + OSTONOR1_LTR 6440 0.0009 (1/1106) 0 * Os_TE_172807 Os_TE_172807 Chr7 21526989 21526988 - OSTONOR1_LTR 6440 0.0009 (1/1108) 0 * Os_TE_172808 Os_TE_172788 Chr7 21512746 21512745 + MERMITED 1572 0.6185 (1830/2959) 0 * * Os_TE_172784 Chr7 21511487 21511488 - SZ-46LTR 3360 0.0292 (36/1231) 0 * Os_TE_172783 Os_TE_172783 Chr7 21511483 21511482 + SZ-46LTR 3360 0.0268 (33/1230) 0 * Os_TE_172784 Os_TE_172780 Chr7 21510157 21510156 + ORSiTERTOOT00226 792 0.0008 (1/1239) 0 * * Os_TE_172766 Chr7 21502912 21503065 - ORSgTEMT01702045 137 0.7732 (1149/1486) 1 Intact * Os_TE_172765 Chr7 21502800 21483955 - MDR2 6967 0.1506 (446/2961) 1 Intact Os_TE_172758 Os_TE_172758 Chr7 21483955 21502800 + MDR2 6967 0.2292 (486/2120) 1 Intact Os_TE_172765 Os_TE_172747 Chr7 21480835 21480836 + ORSgTEMT00100828 349 0.6247 (1824/2920) 0 * * Os_TE_172743 Chr7 21480565 21480566 + ENSPM4_OS 11610 0.0007 (2/2878) 0 * * Os_TE_172740 Chr7 21478438 21478439 - ORSgTEMT02400179 221 0.0008 (2/2497) 0 * * Os_TE_172739 Chr7 21478309 21478308 + ENSPM4_OS 11610 0.6226 (1838/2952) 0 * * Os_TE_172738 Chr7 21477924 21477923 + ORSgTEMT00900846 250 0.6326 (1825/2885) 0 * * Os_TE_172734 Chr7 21477605 21477606 - ORSgTEMT01400014 209 0.0035 (4/1127) 0 * Os_TE_172733 Os_TE_172733 Chr7 21477586 21477585 - STOWAWAY44_OS 240 0.6224 (1775/2852) 0 * Os_TE_172734 Os_TE_172722 Chr7 21476545 21476784 - STOWAWAY51_OS 246 0.4205 (1158/2754) 1 Intact * Os_TE_172721 Chr7 21476489 21476488 - ORSgTEMT01400022 212 0.5760 (1542/2677) 0 * * Os_TE_172710 Chr7 21473449 21473648 + COWARD-3 221 0.3884 (1149/2958) 1 Intact * Os_TE_172703 Chr7 21470006 21470007 - MERMITED 1572 0.0022 (6/2764) 0 * * Os_TE_172697 Chr7 21468568 21468569 - SC-3_LTR 5748 0.0003 (1/2994) 0 * Os_TE_172696 Os_TE_172696 Chr7 21468564 21468563 + ORSiTERTOOT00296 5553 0.0003 (1/2993) 0 * Os_TE_172697 Os_TE_172692 Chr7 21464593 21464594 + TNR12 528 0.8316 (2460/2958) 0 * Os_TE_172691 Os_TE_172691 Chr7 21464589 21464588 - ORSgTEMT01800105 452 0.8309 (2466/2968) 0 * Os_TE_172692 Os_TE_172690 Chr7 21463942 21463779 - ORSgTEMT01700336 154 0.3205 (955/2980) 1 Intact * Os_TE_172680 Chr7 21462680 21462681 - RETROSAT2LTR 12796 0.0013 (4/2999) 0 * * Os_TE_172678 Chr7 21461648 21461647 + INDITTO 263 0.0428 (127/2965) 0 * * Os_TE_172677 Chr7 21461615 21461616 - TYPEM 227 0.0409 (119/2910) 0 * Os_TE_172676 Os_TE_172676 Chr7 21461614 21461613 - ORSgTEMT02400179 221 0.0369 (109/2951) 0 * Os_TE_172677 Os_TE_172663 Chr7 21456810 21456809 - TNR2A 152 0.0994 (295/2969) 0 * * Os_TE_172658 Chr7 21456264 21456532 + DITAILA 257 0.8478 (2518/2970) 1 Intact * Os_TE_172640 Chr7 21450814 21450815 - SZ-67LTR 1540 0.0007 (2/2708) 0 * * Os_TE_172624 Chr7 21446551 21446552 - RIREX_LTR 8828 0.0004 (1/2734) 0 * Os_TE_172623 Os_TE_172623 Chr7 21446547 21446546 + RIREX_LTR 8828 0.0004 (1/2749) 0 * Os_TE_172624 Os_TE_172608 Chr7 21445223 21445222 + ORSgTEMT01702045 137 0.0593 (175/2950) 0 * * Os_TE_172576 Chr7 21435736 21435737 - SZ-55_LTR 10318 0.2557 (763/2984) 0 * * Os_TE_172564 Chr7 21433702 21433701 + SPMLIKE 10989 0.0476 (129/2710) 0 * * Os_TE_172562 Chr7 21433290 21433291 + RETROSAT4_LTR 13504 0.0031 (9/2890) 0 * Os_TE_172561 Os_TE_172561 Chr7 21433286 21433285 - SZ-35LTR 3853 0.0043 (10/2310) 0 * Os_TE_172562 Os_TE_172560 Chr7 21433004 21433005 - TRUNCATOR2_LTR 2904 0.2165 (636/2937) 0 * * Os_TE_172557 Chr7 21432377 21432376 + STOWAWAY1_OS 149 0.0035 (10/2821) 0 * * Os_TE_172555 Chr7 21431863 21431862 - CLOUD-6 508 0.0969 (209/2156) 0 * * Os_TE_172554 Chr7 21431658 21431657 + ORSgTEMT00500512 153 0.0023 (4/1730) 0 * * Os_TE_172553 Chr7 21429826 21429672 + WUWU 113 0.3079 (435/1413) 1 Intact * Os_TE_172540 Chr7 21422424 21422425 + STOWAWAY43_OS 233 0.0624 (37/593) 0 * * Os_TE_172537 Chr7 21421245 21421244 + SZ-55_LTR 10318 0.0661 (36/545) 0 * * Os_TE_172532 Chr7 21418384 21418146 - ORSgTEMT01601432 239 0.3001 (728/2426) 1 Intact Os_TE_172531 Os_TE_172531 Chr7 21418146 21418384 - ORSgTEMT01600902 239 0.4644 (764/1645) 1 Intact Os_TE_172532 Os_TE_172529 Chr7 21417898 21417899 + ORSgTEMT01602275 229 0.4732 (1146/2422) 0 * * Os_TE_172520 Chr7 21414954 21414955 - ORSgTEMT01601432 239 0.1338 (331/2473) 0 * * Os_TE_172519 Chr7 21414562 21414561 - SPMLIKE 10989 0.0004 (1/2490) 0 * * Os_TE_172513 Chr7 21412252 21412253 - COPI2_LTR 4733 0.0057 (14/2473) 0 * Os_TE_172512 Os_TE_172512 Chr7 21412248 21412247 + COPI2_LTR 4733 0.0061 (15/2469) 0 * Os_TE_172513 Os_TE_172505 Chr7 21408832 21408831 + COPI2_LTR 4733 0.0004 (1/2471) 0 * * Os_TE_172502 Chr7 21408606 21408605 + ORSgTEMT00101532 332 0.3659 (438/1197) 0 * * Os_TE_172496 Chr7 21406073 21406072 + MERMITE18E 1528 0.0021 (5/2419) 0 * * Os_TE_172494 Chr7 21403247 21403246 + ORSgTEMT00100531 325 0.0500 (40/800) 0 * * Os_TE_172491 Chr7 21400519 21400520 - RETRO1_LTR 8314 0.1621 (123/759) 0 * Os_TE_172490 Os_TE_172490 Chr7 21400515 21400514 + RETRO1_LTR 8314 0.1586 (122/769) 0 * Os_TE_172491 Os_TE_172475 Chr7 21386761 21386760 - OSTE14 885 0.0023 (2/864) 0 * * Os_TE_172471 Chr7 21383862 21383863 + MERMITE18B 1306 0.1918 (551/2873) 0 * * Os_TE_172466 Chr7 21381885 21381884 + DITTO 244 0.0382 (103/2694) 0 * Os_TE_172465 Os_TE_172465 Chr7 21381884 21381885 - ORSgTEMT00901528 250 0.0110 (29/2632) 0 * Os_TE_172466 Os_TE_172462 Chr7 21381238 21381239 + RIREX_LTR 8828 0.0010 (3/2988) 0 * Os_TE_172461 Os_TE_172461 Chr7 21381234 21381233 - RIREX_LTR 8828 0.0010 (3/2986) 0 * Os_TE_172462 Os_TE_172459 Chr7 21381151 21381152 - SEVERIN-2 1952 0.5335 (1559/2922) 0 * * Os_TE_172456 Chr7 21377106 21377105 + RETRO3_LTR 12751 0.0049 (14/2838) 0 * * Os_TE_172454 Chr7 21376304 21376305 - UNIQUE 158 0.0478 (141/2952) 0 * Os_TE_172453 Os_TE_172453 Chr7 21376302 21376301 + UNIQUE 158 0.0200 (54/2700) 0 * Os_TE_172454 Os_TE_172452 Chr7 21375321 21375322 - OSTE28 298 0.0422 (124/2938) 0 * Os_TE_172451 Os_TE_172451 Chr7 21375313 21375312 + OSTE28 298 0.0472 (137/2900) 0 * Os_TE_172452 Os_TE_172449 Chr7 21375271 21375270 - ORSgTEMT00500439 153 0.7860 (2270/2888) 0 * * Os_TE_172446 Chr7 21374802 21374803 - MUDROS2 6821 0.0594 (148/2493) 0 * * Os_TE_172436 Chr7 21372913 21372912 - UNIQUE 158 0.8183 (2382/2911) 0 * * Os_TE_172435 Chr7 21372728 21372729 - OSTE24 683 0.0389 (116/2982) 0 * * Os_TE_172430 Chr7 21372193 21372194 - F770 284 0.2200 (642/2918) 0 * * Os_TE_172429 Chr7 21371348 21371349 - RETRO2A_LTR 12895 0.0003 (1/2875) 0 * Os_TE_172428 Os_TE_172428 Chr7 21371344 21371343 + RETRO1_LTR 8314 0.0003 (1/2864) 0 * Os_TE_172429 Os_TE_172426 Chr7 21371207 21371208 - ORSgTEMT01701403 154 0.8255 (2432/2946) 0 * * Os_TE_172425 Chr7 21371048 21370866 + SNAP-OL3 189 0.1891 (561/2966) 1 Intact Os_TE_172424 Os_TE_172424 Chr7 21370862 21371045 - SNAP-OL3 189 0.1935 (566/2925) 1 Intact Os_TE_172425 Os_TE_172423 Chr7 21370644 21370643 + AMYLTP 383 0.0114 (34/2975) 0 * * Os_TE_172420 Chr7 21370069 21369683 + TYPEU4 402 0.1870 (560/2994) 1 Intact Os_TE_172419 Os_TE_172419 Chr7 21369683 21370069 - TYPEU1 380 0.1867 (558/2989) 1 Intact Os_TE_172420 Os_TE_172416 Chr7 21369080 21369081 - ORSgTEMT01600639 228 0.1247 (360/2887) 0 * * Os_TE_172403 Chr7 21361895 21361748 - ORSgTEMT00501591 149 0.6643 (1975/2973) 1 Intact * Os_TE_172394 Chr7 21360897 21360898 - ORSgTEMT01701882 154 0.3050 (855/2803) 0 * * Os_TE_172392 Chr7 21359602 21359601 - MDR2 6967 0.3319 (987/2974) 0 * * Os_TE_172388 Chr7 21358156 21358157 + AMYLTP 383 0.2765 (807/2919) 0 * Os_TE_172387 Os_TE_172387 Chr7 21358148 21358147 - AMYLTP 383 0.2797 (814/2910) 0 * Os_TE_172388 Os_TE_172378 Chr7 21355331 21355332 - RIREX_LTR 8828 0.0003 (1/2979) 0 * Os_TE_172377 Os_TE_172377 Chr7 21355327 21355326 + RIREX_LTR 8828 0.0003 (1/2991) 0 * Os_TE_172378 Os_TE_172357 Chr7 21348503 21348504 + OLO24 345 0.0314 (84/2673) 0 * * Os_TE_172311 Chr7 21343443 21343442 - SZ-9LTR 965 0.0003 (1/2955) 0 * * Os_TE_172310 Chr7 21343409 21343410 + RIRE3_LTR 12054 0.0732 (199/2720) 0 * * Os_TE_172304 Chr7 21339942 21336621 - RETROSAT2LTR 12796 0.4368 (1082/2477) 1 Solo_LTR Os_TE_172293 Os_TE_172293 Chr7 21336621 21339940 + RETROSAT2LTR 12796 0.3914 (1031/2634) 1 Solo_LTR Os_TE_172304 Os_TE_172292 Chr7 21336060 21336061 - COPIA2-LTR_OS 6433 0.0385 (101/2621) 0 * Os_TE_172291 Os_TE_172291 Chr7 21336056 21336055 + COPIA2-LTR_OS 6433 0.0356 (96/2696) 0 * Os_TE_172292 Os_TE_172288 Chr7 21333568 21333569 - COPIA2-LTR_OS 6433 0.0004 (1/2701) 0 * * Os_TE_172286 Chr7 21332974 21332973 + TRUNCATOR 2918 0.4499 (1209/2687) 0 * * Os_TE_172285 Chr7 21332973 21332974 - TRUNCATOR 2918 0.2519 (583/2314) 0 * * Os_TE_172284 Chr7 21332957 21332956 + ORSgTEMT01601122 212 0.0056 (12/2153) 0 * * Os_TE_172280 Chr7 21332325 21332326 - RETROSAT4_LTR 13504 0.0156 (42/2696) 0 * * Os_TE_172264 Chr7 21327553 21327554 - SZ-48LTR 3632 0.0252 (65/2584) 0 * * Os_TE_172254 Chr7 21325152 21325151 + ORSgTEMT00700017 386 0.0007 (2/2849) 0 * * Os_TE_172240 Chr7 21323592 21323593 + RIREX_LTR 8828 0.0219 (65/2966) 0 * * Os_TE_172236 Chr7 21323230 21323231 - INDITTO 263 0.0024 (7/2963) 0 * * Os_TE_172234 Chr7 21323001 21323000 - SZ-35LTR 3853 0.0018 (5/2815) 0 * * Os_TE_172231 Chr7 21322060 21321809 + ORSiTEMT01400003 220 0.8905 (2569/2885) 1 Intact Os_TE_172229 Os_TE_172229 Chr7 21321810 21322017 + ORSgTEMT01400032 215 0.8934 (2607/2918) 1 Intact Os_TE_172231 Os_TE_172207 Chr7 21312320 21312321 - JOUZHENA 607 0.2184 (637/2916) 0 * Os_TE_172206 Os_TE_172206 Chr7 21312313 21312312 + JOUZHENA 607 0.2109 (610/2892) 0 * Os_TE_172207 Os_TE_172200 Chr7 21311355 21311356 + ORSgTETNOOT01668 244 0.0374 (108/2891) 0 * * Os_TE_172186 Chr7 21299846 21299845 + ORSgTETNOOT00032 218 0.0755 (226/2992) 0 * * Os_TE_172184 Chr7 21297203 21297204 + RIREX_LTR 8828 0.0013 (4/2996) 0 * Os_TE_172183 Os_TE_172183 Chr7 21297199 21297198 - RIREX_LTR 8828 0.0013 (4/2996) 0 * Os_TE_172184 Os_TE_172177 Chr7 21294428 21294427 - COPIA2-LTR_OS 6433 0.0003 (1/2941) 0 * * Os_TE_172170 Chr7 21288921 21288922 + SZ-48LTR 3632 0.0696 (208/2987) 0 * Os_TE_172169 Os_TE_172169 Chr7 21288917 21288916 - SZ-48LTR 3632 0.0705 (211/2992) 0 * Os_TE_172170 Os_TE_172168 Chr7 21288626 21288627 + ORSgTEMT02900114 314 0.1889 (558/2954) 0 * * Os_TE_172167 Chr7 21288314 21288315 - SZ-35LTR 3853 0.0645 (189/2932) 0 * Os_TE_172166 Os_TE_172166 Chr7 21288310 21288309 + RETROSAT4_LTR 13504 0.0552 (160/2901) 0 * Os_TE_172167 Os_TE_172164 Chr7 21287859 21287860 + RETROSAT4_LTR 13504 0.0149 (42/2815) 0 * * Os_TE_172161 Chr7 21287294 21287295 - ORSgTERT00201216 11284 0.0232 (68/2933) 0 * Os_TE_172160 Os_TE_172160 Chr7 21287290 21287289 - RIRE2_LTR 11306 0.0214 (62/2896) 0 * Os_TE_172161 Os_TE_172156 Chr7 21285895 21285894 - MDR2 6967 0.1237 (339/2740) 0 * * Os_TE_172154 Chr7 21285067 21285066 - SZ-62LTR 3649 0.2303 (659/2862) 0 * * Os_TE_172148 Chr7 21283651 21283652 + Cassandra_OS-LTR 764 0.0004 (1/2624) 0 * * Os_TE_172139 Chr7 21279824 21279823 - COPIA3-LTR_OS 5061 0.1835 (541/2949) 0 * * Os_TE_172138 Chr7 21279691 21279690 + ORSgTETNOOT00317 139 0.0020 (5/2456) 0 * * Os_TE_172135 Chr7 21278675 21278674 - TRUNCATOR 2918 0.0318 (77/2418) 0 * Os_TE_172134 Os_TE_172134 Chr7 21278674 21278675 + TRUNCATOR 2918 0.0359 (85/2367) 0 * Os_TE_172135 Os_TE_172133 Chr7 21277958 21277959 + RIREX_LTR 8828 0.0004 (1/2419) 0 * Os_TE_172132 Os_TE_172132 Chr7 21277954 21277953 - RIREX_LTR 8828 0.0004 (1/2416) 0 * Os_TE_172133 Os_TE_172119 Chr7 21274816 21274817 - F118 179 0.0017 (5/2993) 0 * * Os_TE_172117 Chr7 21274666 21274667 + RETROSAT4_LTR 13504 0.0280 (69/2467) 0 * Os_TE_172116 Os_TE_172116 Chr7 21274662 21274661 - RETROSAT4_LTR 13504 0.0244 (73/2995) 0 * Os_TE_172117 Os_TE_172111 Chr7 21270127 21274023 + RETROSAT4_LTR 13504 0.4071 (980/2407) 1 Solo_LTR * Os_TE_172109 Chr7 21269833 21269832 - SZ-35LTR 3853 0.1062 (318/2994) 0 * * Os_TE_172100 Chr7 21263538 21263539 - RETROSAT4_LTR 13504 0.0027 (8/2994) 0 * * Os_TE_172071 Chr7 21244945 21244944 + ORSgTEMT01701171 147 0.0217 (64/2954) 0 * * Os_TE_172070 Chr7 21244944 21244945 + STOWAWAY1_OS 149 0.0239 (71/2967) 0 * Os_TE_172069 Os_TE_172069 Chr7 21244939 21244938 - ORSgTEMT01701176 148 0.0217 (64/2954) 0 * Os_TE_172070 Os_TE_172061 Chr7 21242861 21243072 + ORSgTEMT01601122 212 0.3381 (963/2848) 1 Intact * Os_TE_172056 Chr7 21242349 21242348 - SINE03_OS 360 0.0236 (70/2961) 0 * Os_TE_172055 Os_TE_172055 Chr7 21242334 21242335 + SEVERIN-2 1952 0.0230 (68/2962) 0 * Os_TE_172056 Os_TE_172050 Chr7 21241797 21241796 + INDITTO 263 0.0041 (12/2962) 0 * * Os_TE_172049 Chr7 21241781 21241571 - ORSgTEMT01600249 239 0.7992 (2356/2948) 1 Intact Os_TE_172047 Os_TE_172047 Chr7 21241564 21241781 - ORSgTEMT01602413 239 0.8033 (2393/2979) 1 Intact Os_TE_172049 Os_TE_172042 Chr7 21238292 21238293 + MPING 430 0.0009 (1/1054) 0 * * Os_TE_172040 Chr7 21236567 21236566 - RETROSAT2LTR 12796 0.0009 (1/1103) 0 * * Os_TE_172031 Chr7 21228963 21228964 + RETROSAT4_LTR 13504 0.0263 (78/2969) 0 * * Os_TE_172029 Chr7 21228645 21228646 + TELIA 141 0.0003 (1/2936) 0 * Os_TE_172028 Os_TE_172028 Chr7 21228637 21228636 - TELIA 141 0.0003 (1/2932) 0 * Os_TE_172029 Os_TE_172024 Chr7 21226501 21226500 - ORSgTEMT02400246 177 0.0004 (1/2775) 0 * Os_TE_172023 Os_TE_172023 Chr7 21226500 21226501 - TYPEM 227 0.0004 (1/2848) 0 * Os_TE_172024 Os_TE_172019 Chr7 21226190 21226189 + RETRO2A_LTR 12895 0.0025 (1/395) -1 * * Os_TE_172018 Chr7 21226126 21226127 + ORSgTEMT01400031 216 0.0004 (1/2557) 0 * * Os_TE_172017 Chr7 21226078 21226079 - SEVERIN-2 1952 0.0259 (71/2746) 0 * * Os_TE_172007 Chr7 21221381 21221382 - MPING 430 0.0234 (70/2989) 0 * Os_TE_172006 Os_TE_172006 Chr7 21221379 21221378 + MPING 430 0.0254 (74/2917) 0 * Os_TE_172007 Os_TE_171997 Chr7 21218911 21218912 + RETROSAT4_LTR 13504 0.0004 (1/2726) 0 * Os_TE_171996 Os_TE_171996 Chr7 21218907 21218906 - SZ-35LTR 3853 0.0004 (1/2815) 0 * Os_TE_171997 Os_TE_171995 Chr7 21218380 21218381 - SZ-40LTR 2465 0.0300 (86/2865) 0 * Os_TE_171994 Os_TE_171994 Chr7 21218376 21218375 + SZ-40LTR 2465 0.0241 (69/2869) 0 * Os_TE_171995 Os_TE_171993 Chr7 21217608 21217609 - HARB-1_OS 5166 0.0017 (5/2986) 0 * Os_TE_171992 Os_TE_171992 Chr7 21217606 21217605 + HARB-1_OS 5166 0.0013 (4/2985) 0 * Os_TE_171993 Os_TE_171981 Chr7 21214664 21214665 - RIREX_LTR 8828 0.0003 (1/2901) 0 * * Os_TE_171980 Chr7 21213790 21213791 + RETRO2A_LTR 12895 0.0017 (5/2998) 0 * * Os_TE_171978 Chr7 21212872 21181096 + RETROSAT4_LTR 13504 0.3266 (976/2988) 1 Intact Os_TE_171945 Os_TE_171945 Chr7 21181096 21212872 - RETROSAT4_LTR 13504 0.3238 (967/2986) 1 Intact Os_TE_171978 Os_TE_171944 Chr7 21180541 21180206 + ORSgTEMT00101341 314 0.3242 (966/2980) 1 Intact Os_TE_171942 Os_TE_171942 Chr7 21180205 21180540 + ORSgTEMT00100531 325 0.3271 (975/2981) 1 Intact Os_TE_171944 Os_TE_171941 Chr7 21179918 21179919 - SZ-67LTR 1540 0.0284 (85/2992) 0 * Os_TE_171940 Os_TE_171940 Chr7 21179914 21179913 + SZ-67LTR 1540 0.0281 (84/2989) 0 * Os_TE_171941 Os_TE_171934 Chr7 21178585 21178586 + DS-RICE4N 715 0.0211 (63/2991) 0 * Os_TE_171933 Os_TE_171933 Chr7 21178578 21178577 - DS-RICE2N 613 0.0448 (65/1452) 0 * Os_TE_171934 Os_TE_171932 Chr7 21178520 21178521 - CRATA 4786 0.0144 (43/2994) 0 * * Os_TE_171928 Chr7 21176334 21176333 - ORSgTEMT01400012 212 0.0018 (5/2754) 0 * * Os_TE_171927 Chr7 21175125 21175126 - ORSgTEMT02000047 197 0.0555 (164/2957) 0 * * Os_TE_171911 Chr7 21170979 21170978 - RPO_OS 1983 0.0017 (5/2983) 0 * Os_TE_171910 Os_TE_171910 Chr7 21170978 21170979 + RPO_OS 1983 0.0035 (5/1413) 0 * Os_TE_171911 Os_TE_171899 Chr7 21165886 21165887 + HARB-1_OS 5166 0.0020 (6/2993) 0 * * Os_TE_171887 Chr7 21164553 21164193 - TYPEU4 402 0.6923 (1712/2473) 1 Intact * Os_TE_171884 Chr7 21160498 21160499 - ORSiTETNOOT00147 3619 0.0189 (56/2964) 0 * Os_TE_171883 Os_TE_171883 Chr7 21160491 21160490 + ORSiTETNOOT00147 3619 0.0171 (51/2976) 0 * Os_TE_171884 Os_TE_171874 Chr7 21157637 21157636 + ORSgTEMT01400031 216 0.0014 (4/2952) 0 * Os_TE_171873 Os_TE_171873 Chr7 21157636 21157637 - STOWAWAY9_OS 235 0.0017 (5/2923) 0 * Os_TE_171874 Os_TE_171866 Chr7 21154727 21154726 - SZ-48LTR 3632 0.0188 (56/2981) 0 * * Os_TE_171858 Chr7 21149548 21149547 + SZ-55_LTR 10318 0.0003 (1/2939) 0 * * Os_TE_171855 Chr7 21146453 21146454 + MPING 430 0.0027 (8/2993) 0 * Os_TE_171854 Os_TE_171854 Chr7 21146451 21146450 - MPING 430 0.0023 (7/2985) 0 * Os_TE_171855 Os_TE_171853 Chr7 21146403 21146404 - DELAY 226 0.0629 (188/2988) 0 * Os_TE_171852 Os_TE_171852 Chr7 21146396 21146395 + DELAY 226 0.0635 (190/2992) 0 * Os_TE_171853 Os_TE_171848 Chr7 21145231 21145232 - RIRE3A_LTR 10580 0.0004 (1/2764) 0 * Os_TE_171847 Os_TE_171847 Chr7 21145227 21145226 + ORSiTERTOOT00027 10853 0.0004 (1/2763) 0 * Os_TE_171848 Os_TE_171839 Chr7 21140428 21140429 - SC-3_LTR 5748 0.0003 (1/2995) 0 * Os_TE_171838 Os_TE_171838 Chr7 21140424 21140423 + ORSiTERTOOT00296 5553 0.0003 (1/2993) 0 * Os_TE_171839 Os_TE_171837 Chr7 21139858 21139859 - RIREX_LTR 8828 0.0003 (1/2977) 0 * Os_TE_171836 Os_TE_171836 Chr7 21139854 21139853 + RIRE2_LTR 11306 0.0003 (1/2976) 0 * Os_TE_171837 Os_TE_171802 Chr7 21126120 21126335 - ORSgTEMT00900741 219 0.3121 (921/2951) 1 Intact * Os_TE_171799 Chr7 21125910 21125911 + COPIA2-LTR_OS 6433 0.0003 (1/2967) 0 * Os_TE_171798 Os_TE_171798 Chr7 21125906 21125905 - COPIA2-LTR_OS 6433 0.0003 (1/2963) 0 * Os_TE_171799 Os_TE_171794 Chr7 21121346 21121347 - COPI2_LTR 4733 0.0003 (1/2985) 0 * * Os_TE_171786 Chr7 21117408 21117284 + ORSgTEMT01700513 151 0.4426 (1169/2641) 1 Intact Os_TE_171785 Os_TE_171785 Chr7 21117283 21117406 - STOWAWAY1_OS 149 0.4961 (1151/2320) 1 Intact Os_TE_171786 Os_TE_171784 Chr7 21116191 21116192 + RIREX_LTR 8828 0.0081 (24/2947) 0 * Os_TE_171783 Os_TE_171783 Chr7 21116187 21116186 - RIREX_LTR 8828 0.0078 (23/2931) 0 * Os_TE_171784 Os_TE_171782 Chr7 21116181 21116182 - TEMPINDAS 4259 0.0003 (1/2934) 0 * * Os_TE_171777 Chr7 21115491 21110944 - SZ-48LTR 3632 0.2036 (601/2952) 1 Intact Os_TE_171773 Os_TE_171773 Chr7 21110944 21115491 + SZ-48LTR 3632 0.2294 (597/2603) 1 Intact Os_TE_171777 Os_TE_171771 Chr7 21110660 21110463 - ORSgTEMT02000040 196 0.3076 (606/1970) 1 Intact Os_TE_171768 Os_TE_171768 Chr7 21110420 21110620 - ORSgTEMT02000063 217 0.3832 (1120/2923) 1 Intact Os_TE_171771 Os_TE_171761 Chr7 21104918 21104917 + COPIA2-LTR_OS 6433 0.0471 (127/2694) 0 * * Os_TE_171760 Chr7 21103993 21103992 - ORSgTEMT01400014 209 0.2279 (271/1189) 0 * * Os_TE_171759 Chr7 21103909 21098020 - RIREX_LTR 8828 0.3165 (906/2863) 1 Intact Os_TE_171751 Os_TE_171751 Chr7 21098020 21103909 + RIREX_LTR 8828 0.3233 (921/2849) 1 Intact Os_TE_171759 Os_TE_171745 Chr7 21096551 21096550 + RETRO2A_LTR 12895 0.0004 (1/2514) 0 * * Os_TE_171742 Chr7 21096027 21096026 - ORSgTEMT01602521 238 0.4239 (694/1637) -1 * * Os_TE_171738 Chr7 21095899 21095556 + ORSgTEMT00100291 345 0.5590 (1217/2177) 1 Intact * Os_TE_171731 Chr7 21095024 21095025 - ORSgTEMT00101657 321 0.5673 (1691/2981) 0 * * Os_TE_171730 Chr7 21094988 21094989 + RIRE5-LTR_OS 6427 0.0626 (187/2987) 0 * Os_TE_171729 Os_TE_171729 Chr7 21094984 21094983 - SZ-9LTR 965 0.0688 (196/2848) 0 * Os_TE_171730 Os_TE_171727 Chr7 21094455 21094082 + STOWAWAY8_OS 259 0.1990 (585/2939) 1 Intact * Os_TE_171721 Chr7 21093320 21093049 - OSTE28 298 0.4869 (1355/2783) 1 Intact * Os_TE_171709 Chr7 21076261 21076262 - ORSgTEMT00500578 129 0.0731 (109/1492) 0 * * Os_TE_171708 Chr7 21076033 21076034 - RIRE2_LTR 11306 0.0007 (1/1499) 0 * Os_TE_171707 Os_TE_171707 Chr7 21076029 21076028 - ORSgTERT00201216 11284 0.0008 (1/1309) 0 * Os_TE_171708 Os_TE_171706 Chr7 21074329 21074330 + RIREX_LTR 8828 0.0010 (2/2095) 0 * Os_TE_171705 Os_TE_171705 Chr7 21074325 21074324 - RIREX_LTR 8828 0.0013 (2/1500) 0 * Os_TE_171706 Os_TE_171704 Chr7 21074190 21074191 - NDNA1TNA_OS 334 0.0007 (1/1494) 0 * * Os_TE_171696 Chr7 21073205 21073204 + ORSiTERTOOT00226 792 0.0007 (1/1516) 0 * * Os_TE_171660 Chr7 21052578 21052577 - ORSgTEMT01600639 228 0.0197 (59/2989) 0 * Os_TE_171659 Os_TE_171659 Chr7 21052569 21052570 - F524 291 0.0211 (63/2988) 0 * Os_TE_171660 Os_TE_171652 Chr7 21051360 21051359 - ORSgTEMT01800105 452 0.6373 (1898/2978) 0 * Os_TE_171651 Os_TE_171651 Chr7 21051358 21051359 - ORSgTEMT01800105 452 0.6338 (1883/2971) 0 * Os_TE_171652 Os_TE_171650 Chr7 21051285 21051286 + OSTE15 1168 0.6172 (1764/2858) 0 * Os_TE_171649 Os_TE_171649 Chr7 21051281 21051280 + OSMU5 4881 0.6166 (1766/2864) 0 * Os_TE_171650 Os_TE_171646 Chr7 21049604 21049605 - STOWAWAY11_OS 292 0.0018 (5/2775) 0 * Os_TE_171645 Os_TE_171645 Chr7 21049603 21049602 + STOWAWAY11_OS 292 0.0017 (5/2902) 0 * Os_TE_171646 Os_TE_171643 Chr7 21048325 21048326 + RIREX_LTR 8828 0.0148 (44/2970) 0 * Os_TE_171642 Os_TE_171642 Chr7 21048321 21048320 - RIREX_LTR 8828 0.0155 (46/2973) 0 * Os_TE_171643 Os_TE_171634 Chr7 21044932 21044933 - INDITTO 263 0.0040 (12/2998) 0 * * Os_TE_171607 Chr7 21031267 21031266 + RETROSAT4_LTR 13504 0.0562 (168/2989) 0 * * Os_TE_171566 Chr7 21009670 21009671 - STOWAWAY51_OS 246 0.0007 (2/2998) 0 * * Os_TE_171552 Chr7 21005067 21005068 - RPO_OS 1983 0.2001 (597/2984) 0 * Os_TE_171551 Os_TE_171551 Chr7 21005063 21005062 + RPO_OS 1983 0.1998 (597/2988) 0 * Os_TE_171552 Os_TE_171549 Chr7 21004384 21004383 - SC-8_LTR 4951 0.0007 (2/2991) 0 * * Os_TE_171540 Chr7 20991304 20991305 - MERMITE18B 1306 0.5932 (1512/2549) 0 * * Os_TE_171512 Chr7 20972681 20972680 + ORSgTEMT01601591 242 0.0170 (51/2997) 0 * Os_TE_171510 Os_TE_171510 Chr7 20972664 20972665 + TNR11 811 0.0189 (40/2113) 0 * Os_TE_171512 Os_TE_171505 Chr7 20967733 20967226 - CLOUD-6 508 0.4336 (1287/2968) 1 Intact * Os_TE_171503 Chr7 20967725 20967724 + RETRO2_LTR 12874 0.5802 (1726/2975) 0 * * Os_TE_171492 Chr7 20956232 20956231 + OSTE33 1012 0.0470 (137/2916) 0 * * Os_TE_171490 Chr7 20956036 20956037 + RIREX_LTR 8828 0.0126 (37/2937) 0 * * Os_TE_171488 Chr7 20955884 20955885 - COPIA2-LTR_OS 6433 0.0447 (131/2930) 0 * Os_TE_171487 Os_TE_171487 Chr7 20955880 20955879 + COPIA2-LTR_OS 6433 0.0462 (136/2945) 0 * Os_TE_171488 Os_TE_171476 Chr7 20952189 20952188 - CACTA-I 1124 0.0084 (25/2991) 0 * * Os_TE_171464 Chr7 20942253 20942254 - MuDR3_OS 8604 0.0134 (37/2758) 0 * Os_TE_171463 Os_TE_171463 Chr7 20942244 20942243 - MuDR3_OS 8604 0.0134 (36/2690) 0 * Os_TE_171464 Os_TE_171452 Chr7 20940377 20940378 + ORSiTERTOOT00381 4988 0.0003 (1/2992) 0 * Os_TE_171451 Os_TE_171451 Chr7 20940373 20940372 - SC-8_LTR 4951 0.0003 (1/2974) 0 * Os_TE_171452 Os_TE_171446 Chr7 20937085 20937086 - ORSgTEMT01702277 177 0.0952 (283/2972) 0 * * Os_TE_171443 Chr7 20935968 20935969 + RPO_OS 1983 0.0648 (192/2963) 0 * * Os_TE_171427 Chr7 20934225 20934224 + ORSgTEMT00300063 413 0.0694 (206/2970) 0 * * Os_TE_171423 Chr7 20933277 20933278 + RIREX_LTR 8828 0.0003 (1/2969) 0 * * Os_TE_171420 Chr7 20931684 20931685 - F770 284 0.0007 (2/2988) 0 * * Os_TE_171416 Chr7 20929808 20929807 - ORSgTEMT02400246 177 0.4168 (1237/2968) 0 * Os_TE_171415 Os_TE_171415 Chr7 20929804 20929805 - ORSgTEMT02400092 225 0.4165 (1235/2965) 0 * Os_TE_171416 Os_TE_171412 Chr7 20929347 20929348 + RETROSAT4_LTR 13504 0.0432 (129/2988) 0 * Os_TE_171411 Os_TE_171411 Chr7 20929343 20929342 - RETROSAT4_LTR 13504 0.0439 (131/2986) 0 * Os_TE_171412 Os_TE_171406 Chr7 20926525 20926524 - ORSgTETNOOT00544 147 0.0007 (2/2926) 0 * * Os_TE_171405 Chr7 20926265 20926264 + ORSgTEMT01601463 239 0.0007 (2/2932) 0 * Os_TE_171404 Os_TE_171404 Chr7 20926262 20926263 + ORSgTEMT01601983 238 0.0010 (3/2933) 0 * Os_TE_171405 Os_TE_171403 Chr7 20926142 20926143 - COPIA2-LTR_OS 6433 0.0157 (46/2926) 0 * Os_TE_171402 Os_TE_171402 Chr7 20926138 20926137 + COPIA2-LTR_OS 6433 0.0161 (47/2927) 0 * Os_TE_171403 Os_TE_171401 Chr7 20925748 20925747 - LINE-4_OS 3662 0.0472 (138/2925) 0 * * Os_TE_171400 Chr7 20925679 20925680 + ORSgTEMT00300122 416 0.0184 (53/2884) 0 * * Os_TE_171399 Chr7 20925203 20924846 - CASTAWAY 364 0.8154 (2305/2827) 1 Intact Os_TE_171396 Os_TE_171396 Chr7 20924842 20925198 - ORSgTEMT00600304 361 0.8513 (2313/2717) 1 Intact Os_TE_171399 Os_TE_171383 Chr7 20920998 20920997 + SC-1_LTR 6888 0.1261 (357/2830) 0 * * Os_TE_171379 Chr7 20919073 20918827 - STOWAWAY41_OS 264 0.8958 (2243/2504) 1 Intact * Os_TE_171371 Chr7 20917475 20917474 + JINHUA 479 0.1758 (509/2895) 0 * * Os_TE_171366 Chr7 20916583 20916582 - F524 291 0.0335 (98/2922) 0 * * Os_TE_171348 Chr7 20906496 20906495 + SPMLIKE 10989 0.0007 (2/2991) 0 * * Os_TE_171346 Chr7 20904418 20904419 - ORSgTEMT03800066 376 0.0061 (18/2962) 0 * * Os_TE_171337 Chr7 20902676 20901928 - BAJIELTR 4500 0.8912 (2663/2988) 1 Solo_LTR Os_TE_171335 Os_TE_171335 Chr7 20901928 20902676 + BAJIELTR 4500 0.8926 (2669/2990) 1 Solo_LTR Os_TE_171337 Os_TE_171332 Chr7 20900365 20900364 + ORSgTEMT02400031 233 0.0885 (264/2984) 0 * * Os_TE_171331 Chr7 20900062 20900061 - ORSiTERTOOT00209 7510 0.0003 (1/2967) 0 * * Os_TE_171321 Chr7 20890072 20896513 + COPIA2-LTR_OS 6433 0.1469 (362/2465) -1 Intact * Os_TE_171308 Chr7 20886550 20886551 - RETRO1_LTR 8314 0.0008 (2/2535) 0 * Os_TE_171307 Os_TE_171307 Chr7 20886546 20886545 + RETRO1_LTR 8314 0.0007 (2/2708) 0 * Os_TE_171308 Os_TE_171299 Chr7 20884469 20884468 + ORSgTEMT01602004 234 0.7713 (2115/2742) 0 * * Os_TE_171289 Chr7 20878648 20878649 - INDITTO 263 0.0004 (1/2621) 0 * * Os_TE_171274 Chr7 20877377 20877136 + ORSgTETNOOT00670 249 0.2585 (631/2441) 1 Intact * Os_TE_171271 Chr7 20877121 20877377 + ORSgTETNOOT01583 259 0.1779 (482/2709) 1 Intact * Os_TE_171270 Chr7 20876886 20876887 - MERMITEA 1710 0.5810 (1603/2759) 0 * Os_TE_171269 Os_TE_171269 Chr7 20876878 20876877 + MERMITEA 1710 0.5810 (1596/2747) 0 * Os_TE_171270 Os_TE_171264 Chr7 20872095 20873302 + COPIA1-LTR_OS 9292 0.8132 (923/1135) 1 Solo_LTR * Os_TE_171263 Chr7 20872081 20872082 + SZ-44LTR 1408 0.5595 (1386/2477) 0 * * Os_TE_171242 Chr7 20867984 20867985 + ORSgTETNOOT00908 242 0.0009 (1/1097) 0 * * Os_TE_171239 Chr7 20866941 20866942 - ORSgTEMT00901345 248 0.0133 (15/1128) 0 * * Os_TE_171215 Chr7 20847994 20848147 - ORSgTEMT01701182 145 0.7165 (915/1277) 1 Intact * Os_TE_171214 Chr7 20845527 20845528 - RETROSAT2LTRA 3112 0.0042 (4/961) 0 * Os_TE_171213 Os_TE_171213 Chr7 20845523 20845522 + RETROSAT2LTRA 3112 0.0053 (5/951) 0 * Os_TE_171214 Os_TE_171180 Chr7 20823900 20823901 - ORSiTETNOOT00216 3569 0.0102 (30/2933) 0 * Os_TE_171179 Os_TE_171179 Chr7 20823893 20823892 + TWIFBIG 3567 0.0148 (44/2963) 0 * Os_TE_171180 Os_TE_171172 Chr7 20822653 20822797 + ORSgTEMT00500476 150 0.8758 (2608/2978) 1 Intact * Os_TE_171159 Chr7 20812566 20812567 - ORSiTETNOOT00134 607 0.0003 (1/2992) 0 * * Os_TE_171158 Chr7 20807790 20807791 - RETRO2_LTR 12874 0.0200 (52/2600) 0 * Os_TE_171157 Os_TE_171157 Chr7 20807786 20807785 + RETRO2_LTR 12874 0.0170 (49/2890) 0 * Os_TE_171158 Os_TE_171152 Chr7 20805831 20806028 + STOWAWAY18_OS 216 0.3096 (906/2926) 1 Intact * Os_TE_171151 Chr7 20805202 20805203 + COPIA2-LTR_OS 6433 0.0003 (1/2976) 0 * Os_TE_171150 Os_TE_171150 Chr7 20805198 20805197 - COPIA2-LTR_OS 6433 0.0003 (1/2967) 0 * Os_TE_171151 Os_TE_171149 Chr7 20804203 20804204 + COPIA2-LTR_OS 6433 0.0003 (1/2950) 0 * Os_TE_171148 Os_TE_171148 Chr7 20804199 20804198 - COPIA2-LTR_OS 6433 0.0003 (1/2974) 0 * Os_TE_171149 Os_TE_171144 Chr7 20802101 20802102 + ORSiCMCM00100019 2717 0.0007 (2/2950) 0 * Os_TE_171143 Os_TE_171143 Chr7 20802097 20802096 - TRUNCATOR2_LTR 2904 0.0007 (2/2962) 0 * Os_TE_171144 Os_TE_171142 Chr7 20801897 20801203 - Cassandra_OS-LTR 764 0.2512 (744/2962) 1 Intact Os_TE_171135 Os_TE_171135 Chr7 20801203 20801897 + Cassandra_OS-LTR 764 0.2601 (771/2964) 1 Intact Os_TE_171142 Os_TE_171132 Chr7 20798637 20798638 + ORSgTEMT00502094 140 0.7017 (2089/2977) 0 * * Os_TE_171131 Chr7 20798277 20798276 + MUJITOS2 4582 0.7490 (2226/2972) 0 * * Os_TE_171128 Chr7 20796428 20796429 - SZ-7A_LTR 11400 0.1692 (158/934) 0 * * Os_TE_171127 Chr7 20794697 20794698 - MERMITE-18 1263 0.7420 (2128/2868) 0 * Os_TE_171126 Os_TE_171126 Chr7 20794694 20794693 - MERMITE18C 1473 0.7386 (2091/2831) 0 * Os_TE_171127 Os_TE_171124 Chr7 20794086 20793837 - STOWAWAY8_OS 259 0.2790 (773/2771) 1 Intact * Os_TE_171102 Chr7 20785006 20784850 - ORSgTEMT01700029 143 0.2042 (497/2434) 1 Intact Os_TE_171101 Os_TE_171101 Chr7 20784852 20785004 + STOWAWAY1_OS 149 0.2128 (497/2336) 1 Intact Os_TE_171102 Os_TE_171100 Chr7 20784618 20784619 + SC-1_LTR 6888 0.0004 (1/2467) 0 * * Os_TE_171099 Chr7 20782840 20782839 - ORSgTEMT01602413 239 0.0069 (17/2460) 0 * Os_TE_171098 Os_TE_171098 Chr7 20782837 20782838 - ORSgTEMT01602413 239 0.0061 (15/2455) 0 * Os_TE_171099 Os_TE_171087 Chr7 20778348 20778130 - ORSgTEMT00900741 219 0.8169 (2440/2987) 1 Intact * Os_TE_171078 Chr7 20777864 20778099 + ORSgTEMT00900053 249 0.8153 (2441/2994) 1 Intact * Os_TE_171074 Chr7 20777512 20777257 - ORSgTEMT00900898 235 0.8170 (2442/2989) 1 Intact Os_TE_171071 Os_TE_171071 Chr7 20777254 20777510 + ORSgTEMT00901844 250 0.8173 (2442/2988) 1 Intact Os_TE_171074 Os_TE_171066 Chr7 20776967 20776743 - F569 228 0.8124 (2399/2953) 1 Intact Os_TE_171065 Os_TE_171065 Chr7 20776738 20776964 + F569 228 0.8122 (2379/2929) 1 Intact Os_TE_171066 Os_TE_171064 Chr7 20776724 20776725 + STOWAWAY1_OS 149 0.0017 (5/2928) 0 * * Os_TE_171042 Chr7 20766035 20766036 - COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_171041 Os_TE_171041 Chr7 20766031 20766030 + COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_171042 Os_TE_171038 Chr7 20763194 20763195 + STOWAWAY18_OS 216 0.0007 (2/2936) 0 * * Os_TE_171036 Chr7 20762545 20762544 + OSTE33 1012 0.0037 (11/2993) 0 * * Os_TE_171028 Chr7 20760094 20760095 - SZ-35LTR 3853 0.6639 (1975/2975) 0 * * Os_TE_171027 Chr7 20759577 20759578 - RIREX_LTR 8828 0.1542 (460/2984) 0 * * Os_TE_171011 Chr7 20752158 20752159 + ORSgTETNOOT01668 244 0.0007 (2/2974) 0 * * Os_TE_171007 Chr7 20749470 20749469 - TYPEM 227 0.0068 (20/2937) 0 * Os_TE_171006 Os_TE_171006 Chr7 20749469 20749470 - ORSgTEMT02400246 177 0.0071 (21/2942) 0 * Os_TE_171007 Os_TE_171004 Chr7 20748163 20748164 - SC-3_LTR 5748 0.0003 (1/2989) 0 * * Os_TE_170999 Chr7 20743542 20743543 + ORSiTERTOOT00296 5553 0.0003 (1/2983) 0 * Os_TE_170998 Os_TE_170998 Chr7 20743538 20743537 - SC-3_LTR 5748 0.0003 (1/2984) 0 * Os_TE_170999 Os_TE_170995 Chr7 20741782 20741783 + ORSgTEMT05000092 279 0.0017 (5/2995) 0 * * Os_TE_170968 Chr7 20726625 20726624 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * * Os_TE_170966 Chr7 20724339 20724338 + OSTE18 129 0.0418 (123/2945) 0 * * Os_TE_170963 Chr7 20723698 20723699 + COPIA2-LTR_OS 6433 0.0044 (13/2931) 0 * Os_TE_170962 Os_TE_170962 Chr7 20723694 20723693 - COPIA2-LTR_OS 6433 0.0055 (16/2935) 0 * Os_TE_170963 Os_TE_170958 Chr7 20723108 20723109 - RETRO1_LTR 8314 0.1572 (467/2970) 0 * * Os_TE_170952 Chr7 20719079 20719080 - INDITTO 263 0.0020 (6/2964) 0 * Os_TE_170951 Os_TE_170951 Chr7 20719077 20719076 + INDITTO 263 0.0021 (6/2870) 0 * Os_TE_170952 Os_TE_170948 Chr7 20713544 20713545 + ORSiTERTOOT00027 10853 0.0003 (1/2959) 0 * Os_TE_170947 Os_TE_170947 Chr7 20713540 20713539 - RIRE3A_LTR 10580 0.0003 (1/2962) 0 * Os_TE_170948 Os_TE_170922 Chr7 20707757 20707758 - AMYLTP 383 0.0831 (239/2877) 0 * Os_TE_170921 Os_TE_170921 Chr7 20707748 20707747 + AMYLTP 383 0.0866 (249/2875) 0 * Os_TE_170922 Os_TE_170895 Chr7 20686604 20686603 + TWIFBIG 3567 0.0114 (34/2989) 0 * * Os_TE_170894 Chr7 20686286 20686287 + RIRE3_LTR 12054 0.0030 (9/2992) 0 * * Os_TE_170892 Chr7 20686150 20686151 + SZ-40LTR 2465 0.0007 (2/2991) 0 * Os_TE_170891 Os_TE_170891 Chr7 20686146 20686145 - SZ-40LTR 2465 0.0007 (2/2968) 0 * Os_TE_170892 Os_TE_170888 Chr7 20682759 20682760 + TRUNCATOR 2918 0.0033 (10/2990) 0 * Os_TE_170887 Os_TE_170887 Chr7 20682755 20682754 + TRUNCATOR 2918 0.0033 (10/2990) 0 * Os_TE_170888 Os_TE_170886 Chr7 20681921 20681920 - RETROSAT2LTR 12796 0.0027 (8/2998) 0 * * Os_TE_170878 Chr7 20679444 20679445 - ORSiTERT00200154 9386 0.0020 (6/2934) 0 * Os_TE_170877 Os_TE_170877 Chr7 20679438 20679437 + TRUNCATOR 2918 0.0027 (8/2938) 0 * Os_TE_170878 Os_TE_170873 Chr7 20679033 20679032 - MUDRN1_OS 764 0.0027 (8/2976) 0 * * Os_TE_170852 Chr7 20654645 20654646 + RETROSAT4_LTR 13504 0.0003 (1/2987) 0 * Os_TE_170851 Os_TE_170851 Chr7 20654641 20654640 - SZ-35LTR 3853 0.0003 (1/2987) 0 * Os_TE_170852 Os_TE_170847 Chr7 20651943 20651942 - COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * * Os_TE_170838 Chr7 20646962 20641781 + CPSC4A_LTR 5182 0.1919 (574/2991) 1 Intact * Os_TE_170835 Chr7 20641468 20641231 - ORSgTEMT01601432 239 0.0636 (190/2989) 1 Intact Os_TE_170834 Os_TE_170834 Chr7 20641231 20641468 + ORSgTEMT01602181 239 0.0559 (166/2972) 1 Intact Os_TE_170835 Os_TE_170827 Chr7 20639961 20639960 - GAIJIN 147 0.0013 (4/2988) 0 * * Os_TE_170826 Chr7 20639735 20639736 + ORSgTEMT00502094 140 0.0017 (5/2961) 0 * Os_TE_170825 Os_TE_170825 Chr7 20639733 20639732 + ORSgTEMT00500209 122 0.0017 (5/2972) 0 * Os_TE_170826 Os_TE_170819 Chr7 20638857 20638858 - TRUNCATOR2_LTR 2904 0.0141 (39/2759) 0 * Os_TE_170818 Os_TE_170818 Chr7 20638853 20638852 + TRUNCATOR2_LTR 2904 0.0131 (37/2823) 0 * Os_TE_170819 Os_TE_170812 Chr7 20637118 20637117 - TRUNCATOR 2918 0.0028 (8/2871) 0 * * Os_TE_170811 Chr7 20637117 20637118 + TRUNCATOR 2918 0.0029 (8/2780) 0 * * Os_TE_170810 Chr7 20637110 20637109 + CACTA-B 1103 0.0018 (5/2835) 0 * * Os_TE_170809 Chr7 20637109 20637110 - CACTA-I 1124 0.0018 (5/2761) 0 * * Os_TE_170793 Chr7 20633706 20633707 + ORSiTERTOOT00027 10853 0.0010 (3/2943) 0 * * Os_TE_170783 Chr7 20628615 20628614 - ENSPM4_OS 11610 0.0028 (8/2851) 0 * * Os_TE_170779 Chr7 20626931 20626930 - INDITTO 263 0.0007 (2/2993) 0 * * Os_TE_170778 Chr7 20626764 20626765 - ENSPM_OS 9843 0.0010 (3/2987) 0 * Os_TE_170777 Os_TE_170777 Chr7 20626762 20626761 + ENSPM_OS 9843 0.0010 (3/2990) 0 * Os_TE_170778 Os_TE_170771 Chr7 20625980 20625981 + SPMLIKE 10989 0.0012 (2/1609) 0 * * Os_TE_170744 Chr7 20620600 20620601 + STOWAWAY51_OS 246 0.2777 (823/2964) 0 * * Os_TE_170738 Chr7 20616096 20616095 - ENSPM4_OS 11610 0.0011 (1/892) -1 * * Os_TE_170737 Chr7 20615698 20615699 - INDITTO 263 0.0007 (2/2753) 0 * Os_TE_170736 Os_TE_170736 Chr7 20615696 20615695 + ORSgTETNOOT02316 263 0.0007 (2/2777) 0 * Os_TE_170737 Os_TE_170735 Chr7 20615666 20615667 + TWIF 586 0.0007 (2/2751) 0 * Os_TE_170734 Os_TE_170734 Chr7 20615659 20615658 - ORSiTETNOOT00134 607 0.0004 (1/2747) 0 * Os_TE_170735 Os_TE_170708 Chr7 20612073 20612074 - MuDR4_OS 7610 0.0833 (245/2940) 0 * Os_TE_170707 Os_TE_170707 Chr7 20612067 20612066 - MuDR4_OS 7610 0.0795 (233/2931) 0 * Os_TE_170708 Os_TE_170705 Chr7 20611968 20611967 - RETRO2_LTR 12874 0.0136 (40/2937) 0 * * Os_TE_170673 Chr7 20603966 20603965 + RETROSAT4_LTR 13504 0.1827 (541/2961) 0 * * Os_TE_170649 Chr7 20594202 20594203 + INDITTO 263 0.0133 (39/2938) 0 * Os_TE_170648 Os_TE_170648 Chr7 20594200 20594199 - INDITTO 263 0.0133 (39/2935) 0 * Os_TE_170649 Os_TE_170628 Chr7 20591564 20591565 - RETROSAT2LTRA 3112 0.0007 (2/2972) 0 * * Os_TE_170618 Chr7 20589748 20589747 + RIREX_LTR 8828 0.0007 (2/2972) 0 * * Os_TE_170588 Chr7 20582251 20582252 + CASGRANDA 465 0.0021 (5/2358) 0 * * Os_TE_170571 Chr7 20578530 20578529 - OSTE1 801 0.0017 (5/2933) 0 * * Os_TE_170544 Chr7 20567991 20572186 - SZ-48LTR 3632 0.1985 (592/2982) 1 Intact * Os_TE_170541 Chr7 20567683 20567684 + RETROSAT4_LTR 13504 0.0372 (111/2983) 0 * Os_TE_170540 Os_TE_170540 Chr7 20567679 20567678 - RETROSAT4_LTR 13504 0.0369 (110/2979) 0 * Os_TE_170541 Os_TE_170538 Chr7 20566194 20566193 - RIREX_LTR 8828 0.0003 (1/2975) 0 * * Os_TE_170534 Chr7 20564549 20564550 + ORSiTERTOOT00074 4935 0.0025 (7/2837) 0 * Os_TE_170533 Os_TE_170533 Chr7 20564545 20564544 - ORSiTERTOOT00074 4935 0.0025 (7/2847) 0 * Os_TE_170534 Os_TE_170528 Chr7 20562371 20562370 - ORSgTEMT00101341 314 0.0007 (2/2980) 0 * * Os_TE_170526 Chr7 20561328 20561327 - TRUNCATOR 2918 0.6817 (1962/2878) 0 * * Os_TE_170507 Chr7 20549242 20549241 + TRUNCATOR 2918 0.7177 (2062/2873) 0 * Os_TE_170506 Os_TE_170506 Chr7 20549241 20549242 - TRUNCATOR 2918 0.6696 (1727/2579) 0 * Os_TE_170507 Os_TE_170505 Chr7 20548864 20548865 + SPMLIKE 10989 0.0022 (6/2712) 0 * Os_TE_170504 Os_TE_170504 Chr7 20548862 20548861 - ORSgTETN00200001 10994 0.0007 (2/2697) 0 * Os_TE_170505 Os_TE_170487 Chr7 20541452 20541453 - RIRE2_LTR 11306 0.0007 (2/2984) 0 * Os_TE_170486 Os_TE_170486 Chr7 20541448 20541447 - ORSgTERT00201216 11284 0.0007 (2/2985) 0 * Os_TE_170487 Os_TE_170479 Chr7 20540073 20540074 + OSTE33 1012 0.0003 (1/2879) 0 * Os_TE_170478 Os_TE_170478 Chr7 20540065 20540064 + OSTE33 1012 0.0003 (1/2943) 0 * Os_TE_170479 Os_TE_170477 Chr7 20540053 20540054 + NDNA1TNA_OS 334 0.0236 (70/2962) 0 * Os_TE_170476 Os_TE_170476 Chr7 20540051 20540050 - NDNA1TNA_OS 334 0.0247 (73/2958) 0 * Os_TE_170477 Os_TE_170471 Chr7 20538237 20538238 + SPMLIKE 10989 0.0253 (68/2690) 0 * Os_TE_170470 Os_TE_170470 Chr7 20538235 20538234 - ORSgTETN00200001 10994 0.0798 (225/2821) 0 * Os_TE_170471 Os_TE_170437 Chr7 20525351 20525352 - COPIA2-LTR_OS 6433 0.0248 (74/2982) 0 * Os_TE_170436 Os_TE_170436 Chr7 20525347 20525346 + COPIA2-LTR_OS 6433 0.0241 (72/2986) 0 * Os_TE_170437 Os_TE_170425 Chr7 20519618 20519617 + ORSgTEMT00501356 145 0.8040 (2343/2914) 0 * Os_TE_170424 Os_TE_170424 Chr7 20519612 20519613 + ORSgTEMT01601122 212 0.7694 (1952/2537) 0 * Os_TE_170425 Os_TE_170416 Chr7 20514146 20514145 - COWARD 200 0.0014 (4/2819) 0 * * Os_TE_170408 Chr7 20511827 20511826 - ORMOSIA 482 0.0014 (4/2958) 0 * * Os_TE_170407 Chr7 20511239 20511238 - ORSgTEMT00700002 381 0.0003 (1/2992) 0 * Os_TE_170406 Os_TE_170406 Chr7 20511232 20511233 + ORSgTEMT00700017 386 0.0003 (1/2998) 0 * Os_TE_170407 Os_TE_170400 Chr7 20508151 20508152 - SZ-62LTR 3649 0.0114 (34/2981) 0 * Os_TE_170399 Os_TE_170399 Chr7 20508147 20508146 + SZ-62LTR 3649 0.0114 (34/2987) 0 * Os_TE_170400 Os_TE_170395 Chr7 20506964 20506963 - NDNA1TNA_OS 334 0.8436 (2509/2974) 0 * * Os_TE_170389 Chr7 20503113 20503112 + ORSiCMCM00100019 2717 0.4825 (1434/2972) 0 * * Os_TE_170363 Chr7 20497362 20493468 - SZ-35LTR 3853 0.1594 (477/2993) 1 Intact Os_TE_170359 Os_TE_170359 Chr7 20493468 20497362 + RETROSAT4_LTR 13504 0.1570 (467/2975) 1 Solo_LTR Os_TE_170363 Os_TE_170353 Chr7 20493124 20493123 + ORSgTEMT01601591 242 0.6865 (2021/2944) 0 * Os_TE_170352 Os_TE_170352 Chr7 20493118 20493119 + STOWAWAY51_OS 246 0.6815 (1971/2892) 0 * Os_TE_170353 Os_TE_170346 Chr7 20488856 20492761 - SZ-35LTR 3853 0.1631 (483/2961) 1 Intact * Os_TE_170343 Chr7 20484507 20484508 - RETRO1_LTR 8314 0.0020 (5/2453) 0 * Os_TE_170342 Os_TE_170342 Chr7 20484503 20484502 + RETRO2A_LTR 12895 0.0024 (6/2452) 0 * Os_TE_170343 Os_TE_170330 Chr7 20478721 20478720 - TRUNCATOR2_LTR 2904 0.0016 (4/2460) 0 * * Os_TE_170324 Chr7 20473087 20473088 + ORSgTEMT01602181 239 0.1557 (447/2870) 0 * * Os_TE_170323 Chr7 20472935 20472936 - COPI2_LTR 4733 0.0008 (2/2437) 0 * Os_TE_170322 Os_TE_170322 Chr7 20472931 20472930 + COPI2_LTR 4733 0.0004 (1/2444) 0 * Os_TE_170323 Os_TE_170321 Chr7 20472283 20472284 + ORSiTERTOOT00020 2547 0.0422 (108/2558) 0 * * Os_TE_170315 Chr7 20457477 20469185 - ORSgTETN00200001 10994 0.1424 (388/2725) 1 Intact * Os_TE_170283 Chr7 20445840 20445839 + RETROSAT4_LTR 13504 0.0255 (71/2786) 0 * * Os_TE_170282 Chr7 20445332 20445333 + RIREX_LTR 8828 0.0003 (1/2872) 0 * Os_TE_170281 Os_TE_170281 Chr7 20445328 20445327 - RIREX_LTR 8828 0.0003 (1/2873) 0 * Os_TE_170282 Os_TE_170276 Chr7 20442166 20442165 + Cassandra_OS-LTR 764 0.0007 (2/2883) 0 * * Os_TE_170273 Chr7 20441531 20441532 + SZ-37_LTR 12001 0.0017 (5/2870) 0 * Os_TE_170272 Os_TE_170272 Chr7 20441527 20441526 - SZ-37_LTR 12001 0.0014 (4/2872) 0 * Os_TE_170273 Os_TE_170271 Chr7 20441269 20441270 + RETROSAT4_LTR 13504 0.2038 (607/2978) 0 * Os_TE_170270 Os_TE_170270 Chr7 20441265 20441264 - SZ-35LTR 3853 0.1769 (509/2878) 0 * Os_TE_170271 Os_TE_170268 Chr7 20440328 20440329 - NDNA1TNA_OS 334 0.0897 (266/2965) 0 * Os_TE_170267 Os_TE_170267 Chr7 20440327 20440326 + NDNA1TNA_OS 334 0.0898 (266/2963) 0 * Os_TE_170268 Os_TE_170248 Chr7 20438307 20427069 + SPMLIKE 10989 0.3136 (444/1416) 1 Intact * Os_TE_170216 Chr7 20423338 20423337 + ORSgTETN00200005 1121 0.0267 (80/2993) 0 * Os_TE_170215 Os_TE_170215 Chr7 20423337 20423338 + CACTA-H 1152 0.0267 (80/2996) 0 * Os_TE_170216 Os_TE_170200 Chr7 20411431 20411432 - COPIA2-LTR_OS 6433 0.0003 (1/2933) 0 * Os_TE_170199 Os_TE_170199 Chr7 20411427 20411426 + COPIA2-LTR_OS 6433 0.0003 (1/2939) 0 * Os_TE_170200 Os_TE_170198 Chr7 20411197 20411198 - ORSgTEMT00502287 149 0.0003 (1/2990) 0 * * Os_TE_170161 Chr7 20398623 20398624 - ORSgTETN00200001 10994 0.1038 (71/684) 0 * Os_TE_170160 Os_TE_170160 Chr7 20398621 20398620 + SPMLIKE 10989 0.1038 (71/684) 0 * Os_TE_170161 Os_TE_170140 Chr7 20392347 20392348 + ORSgTEMT06000088 181 0.0003 (1/2974) 0 * * Os_TE_170100 Chr7 20384250 20384251 + ENSPM6_OS 9815 0.0240 (65/2713) 0 * Os_TE_170099 Os_TE_170099 Chr7 20384244 20384243 - ENSPM5_OS 9581 0.0317 (87/2745) 0 * Os_TE_170100 Os_TE_170095 Chr7 20383226 20371871 - ORSgTETN00200001 10994 0.1380 (394/2855) 1 Intact Os_TE_170090 Os_TE_170090 Chr7 20371869 20383226 + CACTA-B 1103 0.1569 (454/2894) 1 Intact Os_TE_170095 Os_TE_170072 Chr7 20365672 20364310 + OSTE33 1012 0.1820 (542/2978) 1 Intact Os_TE_170069 Os_TE_170069 Chr7 20364310 20365672 - OSTE33 1012 0.1832 (529/2887) 1 Intact Os_TE_170072 Os_TE_170053 Chr7 20361334 20361333 + ORSgTEMT01601591 242 0.0003 (1/2975) 0 * Os_TE_170052 Os_TE_170052 Chr7 20361331 20361332 + ORSgTEMT01601591 242 0.0003 (1/2968) 0 * Os_TE_170053 Os_TE_170030 Chr7 20355567 20355566 + TRUNCATOR 2918 0.5296 (1495/2823) 0 * * Os_TE_170008 Chr7 20351129 20351130 + SZ-43LTR 4039 0.0003 (1/2912) 0 * * Os_TE_170007 Chr7 20350031 20350032 - RIREX_LTR 8828 0.0010 (3/2992) 0 * * Os_TE_170005 Chr7 20348390 20348389 + HELITRON8_OS 8831 0.0007 (2/2972) 0 * * Os_TE_170003 Chr7 20348219 20348220 + ORSgTEMT00100818 160 0.0003 (1/2933) 0 * * Os_TE_169990 Chr7 20345459 20345458 - STOWAWAY11_OS 292 0.7601 (2265/2980) 0 * * Os_TE_169989 Chr7 20344706 20344707 + STOWAWAY11_OS 292 0.7594 (2257/2972) 0 * * Os_TE_169986 Chr7 20343426 20343273 - ORSgTEMT01700029 143 0.2480 (743/2996) 1 Intact * Os_TE_169966 Chr7 20337664 20337663 + ORSiTERTOOT00226 792 0.0010 (3/2981) 0 * * Os_TE_169944 Chr7 20331665 20331664 - COPIA2-LTR_OS 6433 0.0003 (1/2911) 0 * * Os_TE_169943 Chr7 20331440 20331441 + COPIA2-LTR_OS 6433 0.0003 (1/2879) 0 * Os_TE_169942 Os_TE_169942 Chr7 20331436 20331435 - COPIA2-LTR_OS 6433 0.0003 (1/2911) 0 * Os_TE_169943 Os_TE_169937 Chr7 20329833 20329834 + TELIA 141 0.0007 (2/2989) 0 * Os_TE_169936 Os_TE_169936 Chr7 20329825 20329824 - TELIA 141 0.0007 (2/2988) 0 * Os_TE_169937 Os_TE_169931 Chr7 20326881 20326882 - ENSPM4_OS 11610 0.0007 (2/2997) 0 * * Os_TE_169856 Chr7 20238652 20238651 - ORSgTEMT00901138 254 0.0058 (17/2955) 0 * Os_TE_169855 Os_TE_169855 Chr7 20238650 20238651 - ORSgTEMT00900099 250 0.0061 (18/2969) 0 * Os_TE_169856 Os_TE_169850 Chr7 20237795 20237553 + ORSgTEMT01601591 242 0.1533 (455/2969) 1 Intact Os_TE_169849 Os_TE_169849 Chr7 20237550 20237795 + STOWAWAY51_OS 246 0.1453 (427/2939) 1 Intact Os_TE_169850 Os_TE_169844 Chr7 20236415 20236181 + ORSgTEMT01600726 235 0.1599 (478/2990) 1 Intact Os_TE_169843 Os_TE_169843 Chr7 20236178 20236421 + STOWAWAY51_OS 246 0.1601 (480/2998) 1 Intact Os_TE_169844 Os_TE_169839 Chr7 20234317 20233827 + OSTE20 496 0.1675 (479/2859) 1 Intact Os_TE_169838 Os_TE_169838 Chr7 20233827 20234316 - OSTE20 496 0.1641 (468/2852) 1 Intact Os_TE_169839 Os_TE_169827 Chr7 20231571 20231570 + ORSgTETNOOT01668 244 0.0007 (2/2887) 0 * * Os_TE_169821 Chr7 20230515 20230723 + ORSgTEMT00900339 250 0.4546 (1363/2998) 1 Intact * Os_TE_169810 Chr7 20224480 20224481 - SC-3_LTR 5748 0.0003 (1/2985) 0 * Os_TE_169809 Os_TE_169809 Chr7 20224477 20224476 + ORSiTERTOOT00296 5553 0.0003 (1/2984) 0 * Os_TE_169810 Os_TE_169807 Chr7 20220917 20220675 + ORSgTEMT01601591 242 0.3231 (473/1464) 1 Intact * Os_TE_169805 Chr7 20219816 20219817 - RIREX_LTR 8828 0.0007 (1/1489) 0 * * Os_TE_169789 Chr7 20204990 20204989 - OSTE33 1012 0.0988 (275/2782) 0 * * Os_TE_169787 Chr7 20204521 20204522 - INDITTO 263 0.1811 (538/2971) 0 * * Os_TE_169775 Chr7 20201477 20201476 + ORSgTEMT01701965 154 0.6667 (1992/2988) 0 * * Os_TE_169769 Chr7 20200199 20199810 + TYPEU4 402 0.3646 (1065/2921) 1 Intact Os_TE_169768 Os_TE_169768 Chr7 20199810 20200199 - TYPEU1 380 0.8263 (1032/1249) 1 Intact Os_TE_169769 Os_TE_169757 Chr7 20197070 20195268 - MERMITED 1572 0.3524 (1021/2897) 1 Intact Os_TE_169754 Os_TE_169754 Chr7 20195264 20197068 - MERMITED 1572 0.3657 (1082/2959) 1 Intact Os_TE_169757 Os_TE_169747 Chr7 20191063 20191062 - ORSgTEMT01701488 202 0.0014 (4/2905) 0 * * Os_TE_169726 Chr7 20174563 20174564 + COPIA2-LTR_OS 6433 0.0008 (1/1275) 0 * Os_TE_169725 Os_TE_169725 Chr7 20174559 20174558 - COPIA2-LTR_OS 6433 0.0008 (1/1276) 0 * Os_TE_169726 Os_TE_169718 Chr7 20172237 20171296 + XIKE 594 0.8967 (1224/1365) 1 Intact * Os_TE_169711 Chr7 20170959 20170596 - ORSgTEMT00600085 364 0.3870 (483/1248) 1 Intact * Os_TE_169702 Chr7 20163539 20163538 - RPO_OS 1983 0.0046 (5/1083) 0 * * Os_TE_169688 Chr7 20158631 20158632 - RIRE2_LTR 11306 0.0021 (3/1399) 0 * * Os_TE_169687 Chr7 20158434 20158435 - SC-3_LTR 5748 0.5435 (600/1104) 0 * * Os_TE_169674 Chr7 20154753 20154752 - SC-7_LTR 4431 0.0010 (3/2858) 0 * * Os_TE_169673 Chr7 20152301 20152302 - MPING 430 0.0004 (1/2845) 0 * Os_TE_169672 Os_TE_169672 Chr7 20152299 20152298 + MPING 430 0.0004 (1/2596) 0 * Os_TE_169673 Os_TE_169668 Chr7 20149431 20147310 - ORSgTEMT01702216 170 0.3760 (1069/2843) 1 Intact Os_TE_169663 Os_TE_169663 Chr7 20147310 20149430 - ORSgTEMT01700317 132 0.3738 (1059/2833) 1 Intact Os_TE_169668 Os_TE_169661 Chr7 20147008 20146770 - ORSgTEMT01601493 303 0.3701 (1048/2832) 1 Intact Os_TE_169660 Os_TE_169660 Chr7 20146770 20147008 + ORSgTEMT01601934 207 0.3577 (997/2787) 1 Intact Os_TE_169661 Os_TE_169658 Chr7 20146405 20146404 + SZ-55_LTR 10318 0.5513 (1548/2808) 0 * * Os_TE_169657 Chr7 20146274 20146273 - ORSgTEMT00500578 129 0.5439 (1506/2769) -1 * * Os_TE_169641 Chr7 20135415 20135414 - MERMITED 1572 0.0023 (5/2187) 0 * * Os_TE_169639 Chr7 20135366 20135365 + MERMITE18E 1528 0.1012 (269/2657) 0 * * Os_TE_169638 Chr7 20135268 20135267 + OSTE33 1012 0.5416 (1439/2657) 0 * * Os_TE_169634 Chr7 20133513 20133514 + SC-7_LTR 4431 0.0003 (1/2998) 0 * Os_TE_169633 Os_TE_169633 Chr7 20133509 20133508 - SC-7_LTR 4431 0.0003 (1/2993) 0 * Os_TE_169634 Os_TE_169632 Chr7 20132956 20132957 - COPI2_LTR 4733 0.0003 (1/2996) 0 * * Os_TE_169631 Chr7 20129708 20129707 - ORSgTEMT01602413 239 0.0033 (5/1515) 0 * Os_TE_169630 Os_TE_169630 Chr7 20129705 20129706 - ORSgTEMT01602413 239 0.0026 (4/1536) 0 * Os_TE_169631 Os_TE_169629 Chr7 20129452 20129247 - ORSgTEMT00900293 223 0.7238 (1106/1528) 1 Intact * Os_TE_169623 Chr7 20128988 20129240 + ORSgTETNOOT01998 254 0.7131 (1101/1544) 1 Intact * Os_TE_169615 Chr7 20123439 20123440 + ORSgTEMT00501222 152 0.6472 (1917/2962) 0 * * Os_TE_169592 Chr7 20111095 20111096 + ORSgTEMT00501356 145 0.0011 (3/2845) 0 * * Os_TE_169591 Chr7 20110983 20110984 - RIREX_LTR 8828 0.0003 (1/2948) 0 * Os_TE_169590 Os_TE_169590 Chr7 20110979 20110978 + RIREX_LTR 8828 0.0003 (1/2942) 0 * Os_TE_169591 Os_TE_169582 Chr7 20106781 20106780 + ORSgTEMT00101674 340 0.0147 (44/2986) 0 * Os_TE_169581 Os_TE_169581 Chr7 20106780 20106781 + NDNA1TNA_OS 334 0.0151 (45/2985) 0 * Os_TE_169582 Os_TE_169573 Chr7 20105859 20105860 - RETRO1_LTR 8314 0.4305 (1263/2934) 0 * Os_TE_169572 Os_TE_169572 Chr7 20105858 20105857 + RETRO2A_LTR 12895 0.4297 (1251/2911) 0 * Os_TE_169573 Os_TE_169538 Chr7 20100119 20099969 + ORSgTEMT01702004 154 0.8792 (1820/2070) 1 Intact * Os_TE_169526 Chr7 20098798 20098797 + ORSgTEMT00501441 144 0.0006 (1/1736) 0 * * Os_TE_169523 Chr7 20097042 20097041 + ORSgTEMT01600662 238 0.4215 (1246/2956) 0 * * Os_TE_169522 Chr7 20095051 20095050 + ORSgTEMT01600486 232 0.4078 (1195/2930) 0 * Os_TE_169521 Os_TE_169521 Chr7 20095048 20095049 + ORSgTEMT01601525 239 0.4154 (1222/2942) 0 * Os_TE_169522 Os_TE_169518 Chr7 20090121 20090120 - SC-3_LTR 5748 0.0030 (9/2988) 0 * * Os_TE_169482 Chr7 20071794 20071795 - ORSgTEMT01700029 143 0.0037 (3/815) 0 * * Os_TE_169461 Chr7 20061803 20061804 + SZ-9LTR 965 0.2095 (369/1761) 0 * * Os_TE_169445 Chr7 20053498 20053499 - DNAUN1_OS 408 0.4347 (1298/2986) 0 * * Os_TE_169435 Chr7 20049160 20049159 + COPI2_LTR 4733 0.0003 (1/2979) 0 * * Os_TE_169429 Chr7 20047330 20047329 + ORSiTERTOOT00296 5553 0.0006 (1/1770) 0 * * Os_TE_169426 Chr7 20042567 20042568 + TOS17LTR 138 0.2191 (388/1771) 0 * * Os_TE_169401 Chr7 20015785 20015786 - ORSgTEMT00101544 331 0.4182 (1206/2884) 0 * Os_TE_169400 Os_TE_169400 Chr7 20015774 20015773 + ORSgTEMT00101400 332 0.4243 (1235/2911) 0 * Os_TE_169401 Os_TE_169389 Chr7 20012217 20012218 - RIREX_LTR 8828 0.0003 (1/2981) 0 * * Os_TE_169372 Chr7 20008319 20008320 + TRUNCATOR2_LTR 2904 0.0017 (5/2948) 0 * * Os_TE_169356 Chr7 20005140 20005141 - RETRO1_LTR 8314 0.0077 (23/2980) 0 * Os_TE_169355 Os_TE_169355 Chr7 20005136 20005135 + RETRO2_LTR 12874 0.0077 (23/2978) 0 * Os_TE_169356 Os_TE_169344 Chr7 20002158 20002159 - COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_169343 Os_TE_169343 Chr7 20002154 20002153 + COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_169344 Os_TE_169333 Chr7 19999750 19999749 - SZ-25LTR 330 0.0007 (2/2807) 0 * * Os_TE_169315 Chr7 19995202 19995203 + RETRO2A_LTR 12895 0.0077 (23/2998) 0 * * Os_TE_169297 Chr7 19981507 19981506 - COPIA2-LTR_OS 6433 0.0009 (1/1155) 0 * * Os_TE_169285 Chr7 19976242 19976243 + SC-8_LTR 4951 0.0010 (3/2984) 0 * Os_TE_169284 Os_TE_169284 Chr7 19976238 19976237 - SC-8_LTR 4951 0.0010 (3/2997) 0 * Os_TE_169285 Os_TE_169283 Chr7 19975887 19975888 + COPIA2-LTR_OS 6433 0.0004 (1/2849) 0 * * Os_TE_169280 Chr7 19975639 19975640 + HELITRON7_OS 10153 0.0351 (100/2845) 0 * * Os_TE_169270 Chr7 19972648 19972649 - COPIA2-LTR_OS 6433 0.0003 (1/2983) 0 * Os_TE_169269 Os_TE_169269 Chr7 19972644 19972643 + COPIA2-LTR_OS 6433 0.0004 (1/2784) 0 * Os_TE_169270 Os_TE_169249 Chr7 19964636 19964635 + ORSgTEMT00100272 356 0.0017 (5/2974) 0 * Os_TE_169248 Os_TE_169248 Chr7 19964635 19964636 + NDNA1TNA_OS 334 0.0017 (5/2967) 0 * Os_TE_169249 Os_TE_169229 Chr7 19956199 19956200 + NDNA1TNA_OS 334 0.0197 (25/1267) 0 * Os_TE_169228 Os_TE_169228 Chr7 19956197 19956196 - NDNA1TNA_OS 334 0.0204 (26/1272) 0 * Os_TE_169229 Os_TE_169214 Chr7 19951235 19951236 - ORSiTETNOOT00199 3501 0.0047 (13/2784) 0 * Os_TE_169213 Os_TE_169213 Chr7 19951228 19951227 + TWIF 586 0.0086 (24/2788) 0 * Os_TE_169214 Os_TE_169206 Chr7 19943698 19943697 + ORSgTEMT01701547 160 0.0511 (153/2993) 0 * Os_TE_169205 Os_TE_169205 Chr7 19943695 19943696 - ORSgTEMT01701266 154 0.0502 (150/2991) 0 * Os_TE_169206 Os_TE_169199 Chr7 19936447 19936448 + ORSiTERTOOT00226 792 0.0007 (2/2986) 0 * * Os_TE_169196 Chr7 19932066 19932067 - DS-RICE2N 613 0.0096 (23/2384) 0 * Os_TE_169195 Os_TE_169195 Chr7 19932059 19932058 + DS-RICE2N 613 0.0092 (22/2400) 0 * Os_TE_169196 Os_TE_169179 Chr7 19920156 19920155 - ORSiTETNOOT00216 3569 0.0237 (57/2408) 0 * * Os_TE_169174 Chr7 19917904 19917674 + ORSgTETNOOT01219 231 0.1065 (318/2985) 1 Intact * Os_TE_169165 Chr7 19911408 19911409 + ORSgTETNOOT00908 242 0.0080 (23/2890) 0 * * Os_TE_169144 Chr7 19901421 19901422 + COPIA2-LTR_OS 6433 0.0007 (2/2993) 0 * Os_TE_169143 Os_TE_169143 Chr7 19901417 19901416 - COPIA2-LTR_OS 6433 0.0007 (2/2982) 0 * Os_TE_169144 Os_TE_169129 Chr7 19895978 19895977 + TWIF 586 0.0003 (1/2996) 0 * * Os_TE_169117 Chr7 19891799 19891800 + Cassandra_OS-LTR 764 0.7881 (2362/2997) 0 * Os_TE_169116 Os_TE_169116 Chr7 19891795 19891794 - Cassandra_OS-LTR 764 0.7689 (2179/2834) 0 * Os_TE_169117 Os_TE_169115 Chr7 19891792 19891793 + Cassandra_OS-LTR 764 0.7883 (2361/2995) 0 * * Os_TE_169114 Chr7 19891381 19891382 + ORSiCMCM00100019 2717 0.0054 (16/2971) 0 * Os_TE_169113 Os_TE_169113 Chr7 19891377 19891376 - TRUNCATOR2_LTR 2904 0.0143 (43/2997) 0 * Os_TE_169114 Os_TE_169112 Chr7 19890851 19890852 - OSTE24 683 0.0398 (116/2918) 0 * Os_TE_169111 Os_TE_169111 Chr7 19890840 19890839 - OSTE24 683 0.0474 (139/2932) 0 * Os_TE_169112 Os_TE_169106 Chr7 19890144 19890145 + MuDR2_OS 6770 0.0466 (139/2986) 0 * Os_TE_169105 Os_TE_169105 Chr7 19890135 19890134 - MuDR2_OS 6770 0.0381 (113/2963) 0 * Os_TE_169106 Os_TE_169098 Chr7 19884558 19884559 + ORSgTEMT00600272 361 0.0003 (1/2975) 0 * Os_TE_169097 Os_TE_169097 Chr7 19884556 19884555 - ORSgTEMT00600524 364 0.0003 (1/2977) 0 * Os_TE_169098 Os_TE_169078 Chr7 19882427 19882428 - ORSgTEMT00501219 127 0.0008 (2/2646) 0 * * Os_TE_169072 Chr7 19880147 19867271 + RETRO2_LTR 12874 0.1092 (317/2903) 1 Intact * Os_TE_169052 Chr7 19862694 19862693 - ORSgTEMT01601493 303 0.0031 (9/2900) 0 * * Os_TE_169047 Chr7 19861570 19861571 - ORSiTETNOOT00216 3569 0.3870 (613/1584) 0 * Os_TE_169046 Os_TE_169046 Chr7 19861564 19861563 + TWIFBIG 3567 0.3904 (636/1629) 0 * Os_TE_169047 Os_TE_169043 Chr7 19859497 19859498 + RIREX_LTR 8828 0.0488 (144/2948) 0 * Os_TE_169042 Os_TE_169042 Chr7 19859493 19859492 - RIREX_LTR 8828 0.0268 (60/2235) 0 * Os_TE_169043 Os_TE_169035 Chr7 19858384 19858385 + ORSgTEMT01700789 143 0.0013 (4/2981) 0 * Os_TE_169034 Os_TE_169034 Chr7 19858380 19858379 - STOWAWAY1_OS 149 0.0017 (5/2987) 0 * Os_TE_169035 Os_TE_169017 Chr7 19850492 19850493 - JOUZHENA 607 0.6758 (1876/2776) 0 * * Os_TE_169002 Chr7 19846467 19846468 - NDNA1TNA_OS 334 0.0047 (14/2977) 0 * Os_TE_169001 Os_TE_169001 Chr7 19846465 19846464 + NDNA1TNA_OS 334 0.0044 (13/2978) 0 * Os_TE_169002 Os_TE_168996 Chr7 19842869 19842870 + SC-8_LTR 4951 0.0003 (1/2887) 0 * Os_TE_168995 Os_TE_168995 Chr7 19842865 19842864 - SC-8_LTR 4951 0.0003 (1/2870) 0 * Os_TE_168996 Os_TE_168976 Chr7 19837668 19837669 + F804 170 0.0096 (13/1351) 0 * Os_TE_168975 Os_TE_168975 Chr7 19837660 19837659 - F804 170 0.0096 (13/1356) 0 * Os_TE_168976 Os_TE_168972 Chr7 19836357 19836358 + RETRO2A_LTR 12895 0.1070 (149/1393) 0 * * Os_TE_168947 Chr7 19828330 19828101 - ORSgTEMT00900741 219 0.8826 (1248/1414) 1 Intact * Os_TE_168940 Chr7 19827145 19826463 - OSTE24 683 0.3138 (300/956) 1 Intact * Os_TE_168929 Chr7 19823400 19823399 + TRUNCATOR 2918 0.4816 (679/1410) 0 * Os_TE_168928 Os_TE_168928 Chr7 19823399 19823400 - TRUNCATOR 2918 0.4780 (673/1408) 0 * Os_TE_168929 Os_TE_168867 Chr7 19789545 19789546 + ORSgTETNOOT02213 263 0.0004 (1/2819) 0 * Os_TE_168866 Os_TE_168866 Chr7 19789543 19789542 - INDITTO 263 0.0018 (5/2828) 0 * Os_TE_168867 Os_TE_168853 Chr7 19787795 19787796 - MPING 430 0.0004 (1/2801) 0 * Os_TE_168852 Os_TE_168852 Chr7 19787793 19787792 + MPING 430 0.0004 (1/2836) 0 * Os_TE_168853 Os_TE_168850 Chr7 19787435 19787436 - ORSgTEMT00600085 364 0.0534 (159/2979) 0 * * Os_TE_168849 Chr7 19787434 19787433 + ORSgTEMT00600272 361 0.0017 (5/2967) 0 * * Os_TE_168838 Chr7 19777944 19777945 + RETRO2_LTR 12874 0.0476 (142/2986) 0 * * Os_TE_168836 Chr7 19776887 19776886 - ORSgTEMT02400246 177 0.0003 (1/2973) 0 * * Os_TE_168822 Chr7 19766570 19766569 + TREP220 109 0.0600 (179/2983) 0 * Os_TE_168821 Os_TE_168821 Chr7 19766567 19766568 + TREP220 109 0.0587 (175/2981) 0 * Os_TE_168822 Os_TE_168819 Chr7 19764465 19764464 - ORSgTEMT01601208 238 0.0581 (173/2980) 0 * Os_TE_168818 Os_TE_168818 Chr7 19764462 19764463 - ORSgTEMT01600639 228 0.0582 (173/2971) 0 * Os_TE_168819 Os_TE_168815 Chr7 19761482 19761483 + CLOUD-6 508 0.0602 (177/2941) 0 * Os_TE_168814 Os_TE_168814 Chr7 19761474 19761473 - CLOUD-6 508 0.0638 (188/2947) 0 * Os_TE_168815 Os_TE_168802 Chr7 19753713 19757549 + RETROSAT4_LTR 13504 0.0313 (70/2238) -1 Solo_LTR * Os_TE_168793 Chr7 19751552 19751553 - OSTE20 496 0.0389 (112/2877) 0 * * Os_TE_168786 Chr7 19749646 19749645 + RETRO2A_LTR 12895 0.0315 (91/2889) 0 * * Os_TE_168783 Chr7 19749041 19749040 + STOWAWAY50_OS 174 0.0563 (166/2946) 0 * * Os_TE_168780 Chr7 19747847 19747848 + COPIA2-LTR_OS 6433 0.0362 (108/2987) 0 * Os_TE_168779 Os_TE_168779 Chr7 19747843 19747842 - COPIA2-LTR_OS 6433 0.0369 (110/2983) 0 * Os_TE_168780 Os_TE_168769 Chr7 19744742 19744743 - STOWAWAY1_OS 149 0.0482 (144/2986) 0 * * Os_TE_168764 Chr7 19741660 19741659 + OSTE33 1012 0.0460 (138/2997) 0 * * Os_TE_168763 Chr7 19741309 19741310 + ORSiTERTOOT00296 5553 0.0033 (10/2994) 0 * * Os_TE_168759 Chr7 19739610 19739609 + ORSgTETNOOT00908 242 0.0003 (1/2991) 0 * * Os_TE_168758 Chr7 19739238 19739239 + SC-8_LTR 4951 0.0003 (1/2988) 0 * Os_TE_168757 Os_TE_168757 Chr7 19739234 19739233 - SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_168758 Os_TE_168756 Chr7 19738990 19738991 + SC-8_LTR 4951 0.0003 (1/2986) 0 * Os_TE_168755 Os_TE_168755 Chr7 19738986 19738985 - SC-8_LTR 4951 0.0003 (1/2988) 0 * Os_TE_168756 Os_TE_168741 Chr7 19733371 19733372 + F524 291 0.0010 (3/2981) 0 * * Os_TE_168723 Chr7 19724775 19711643 + ORSgTERTOOT00009 12852 0.3351 (325/970) 1 Intact * Os_TE_168694 Chr7 19696054 19696055 - TYPEU1 380 0.0014 (4/2843) 0 * * Os_TE_168693 Chr7 19693157 19693156 + STOWAWAY51_OS 246 0.0025 (7/2839) 0 * Os_TE_168692 Os_TE_168692 Chr7 19693151 19693152 + ORSgTEMT01601591 242 0.0032 (9/2842) 0 * Os_TE_168693 Os_TE_168676 Chr7 19685640 19685641 + RIRE2_LTR 11306 0.0027 (8/2992) 0 * * Os_TE_168674 Chr7 19685280 19685281 - ORSgTEMT01700299 212 0.0015 (4/2718) 0 * * Os_TE_168672 Chr7 19681431 19673777 + MDR2 6967 0.1126 (336/2983) 1 Intact Os_TE_168671 Os_TE_168671 Chr7 19673774 19681431 + MDR2 6967 0.1118 (333/2978) 1 Intact Os_TE_168672 Os_TE_168641 Chr7 19652441 19652442 + Cassandra_OS-LTR 764 0.0023 (7/2990) 0 * * Os_TE_168623 Chr7 19638479 19638478 - SZ-9LTR 965 0.0007 (2/2999) 0 * * Os_TE_168616 Chr7 19636118 19635809 - Cassandra_OS-LTR 764 0.1674 (500/2986) 1 Solo_LTR Os_TE_168614 Os_TE_168614 Chr7 19635809 19636074 + Cassandra_OS-LTR 764 0.1655 (494/2984) 1 Solo_LTR Os_TE_168616 Os_TE_168581 Chr7 19623628 19623629 + RETRO2A_LTR 12895 0.0525 (157/2991) 0 * * Os_TE_168561 Chr7 19621342 19621341 - COPIA2-LTR_OS 6433 0.0526 (156/2967) 0 * * Os_TE_168553 Chr7 19619419 19619420 + RIRE2_LTR 11306 0.0612 (183/2988) 0 * Os_TE_168552 Os_TE_168552 Chr7 19619415 19619414 - RIRE2_LTR 11306 0.0606 (181/2985) 0 * Os_TE_168553 Os_TE_168549 Chr7 19618225 19618226 + MPING 430 0.0007 (2/2956) 0 * Os_TE_168548 Os_TE_168548 Chr7 19618223 19618222 - MPING 430 0.0007 (2/2960) 0 * Os_TE_168549 Os_TE_168545 Chr7 19617592 19617593 + DASIA-2 1198 0.0304 (83/2732) 0 * * Os_TE_168484 Chr7 19595941 19595942 - SC-8_LTR 4951 0.0007 (2/2990) 0 * Os_TE_168483 Os_TE_168483 Chr7 19595937 19595936 + SC-8_LTR 4951 0.0007 (2/2984) 0 * Os_TE_168484 Os_TE_168470 Chr7 19582689 19582688 - INDITTO 263 0.0917 (273/2978) 0 * * Os_TE_168464 Chr7 19581588 19581589 - GAIJIN 147 0.0017 (5/2939) 0 * * Os_TE_168457 Chr7 19580098 19580097 - RETRO3_LTR 12751 0.0005 (1/2133) 0 * * Os_TE_168444 Chr7 19578007 19578008 + SZ-10LTR 1412 0.0017 (5/2931) 0 * * Os_TE_168442 Chr7 19576882 19576883 + RETRO1_LTR 8314 0.0010 (3/2934) 0 * Os_TE_168441 Os_TE_168441 Chr7 19576878 19576877 - RETRO1_LTR 8314 0.0010 (3/2927) 0 * Os_TE_168442 Os_TE_168429 Chr7 19559267 19559268 - NDNA1TNA_OS 334 0.0058 (16/2736) 0 * * Os_TE_168427 Chr7 19559232 19558884 - ORSgTEMT00101341 314 0.6994 (2024/2894) 1 Intact Os_TE_168425 Os_TE_168425 Chr7 19558885 19559231 + NDNA2TNA_OS 346 0.7018 (2057/2931) 1 Intact Os_TE_168427 Os_TE_168423 Chr7 19558452 19558451 - ORSgTEMT02000041 194 0.5686 (1687/2967) 0 * * Os_TE_168412 Chr7 19554503 19554504 - SZ-62LTR 3649 0.0468 (132/2821) 0 * * Os_TE_168379 Chr7 19546119 19546118 + STOWAWAY51_OS 246 0.0003 (1/2877) 0 * * Os_TE_168362 Chr7 19542580 19542581 - SC-8_LTR 4951 0.0010 (3/2987) 0 * Os_TE_168361 Os_TE_168361 Chr7 19542576 19542575 + SC-8_LTR 4951 0.0010 (3/2985) 0 * Os_TE_168362 Os_TE_168348 Chr7 19536991 19536992 - TYPEM 227 0.0704 (206/2928) 0 * Os_TE_168347 Os_TE_168347 Chr7 19536990 19536989 - ORSgTEMT02400179 221 0.0677 (198/2925) 0 * Os_TE_168348 Os_TE_168340 Chr7 19535649 19535650 - OSTE33 1012 0.0861 (256/2975) 0 * Os_TE_168339 Os_TE_168339 Chr7 19535641 19535640 + OSTE33 1012 0.0901 (269/2987) 0 * Os_TE_168340 Os_TE_168323 Chr7 19529228 19529229 - TRUNCATOR 2918 0.0020 (6/2966) 0 * * Os_TE_168289 Chr7 19514281 19514280 + INDITTO 263 0.0013 (4/2985) 0 * * Os_TE_168262 Chr7 19506659 19506658 - RETROSAT2LTR 12796 0.0922 (276/2994) 0 * * Os_TE_168250 Chr7 19500635 19500634 - TYPEM 227 0.0055 (16/2930) 0 * Os_TE_168249 Os_TE_168249 Chr7 19500634 19500635 - ORSgTEMT02400246 177 0.0058 (17/2955) 0 * Os_TE_168250 Os_TE_168246 Chr7 19498935 19498934 + ORSgTETNOOT00908 242 0.0013 (4/2997) 0 * * Os_TE_168241 Chr7 19493961 19493962 + ORSgTEMT01602181 239 0.7288 (1986/2725) 0 * Os_TE_168240 Os_TE_168240 Chr7 19493958 19493957 + ORSgTEMT01602181 239 0.7551 (2245/2973) 0 * Os_TE_168241 Os_TE_168224 Chr7 19489138 19489139 - SZ-44LTR 1408 0.0013 (4/2981) 0 * * Os_TE_168206 Chr7 19482604 19482605 + INDITTO 263 0.0003 (1/2985) 0 * Os_TE_168205 Os_TE_168205 Chr7 19482602 19482601 - INDITTO 263 0.0003 (1/2983) 0 * Os_TE_168206 Os_TE_168193 Chr7 19476967 19476966 + SC-7_LTR 4431 0.8044 (2139/2659) 0 * * Os_TE_168155 Chr7 19465684 19465685 - MPING 430 0.0015 (4/2752) 0 * Os_TE_168154 Os_TE_168154 Chr7 19465682 19465681 + MPING 430 0.0015 (4/2754) 0 * Os_TE_168155 Os_TE_168139 Chr7 19462367 19462368 - TYPEM 227 0.0030 (9/2984) 0 * Os_TE_168138 Os_TE_168138 Chr7 19462366 19462365 - ORSgTEMT02400179 221 0.0030 (9/2974) 0 * Os_TE_168139 Os_TE_168126 Chr7 19458029 19458030 + ORSgTETNOOT00908 242 0.7144 (2096/2934) 0 * * Os_TE_168113 Chr7 19451507 19451508 + RETRO2A_LTR 12895 0.0452 (135/2989) 0 * Os_TE_168112 Os_TE_168112 Chr7 19451503 19451502 - RETRO2A_LTR 12895 0.0452 (135/2989) 0 * Os_TE_168113 Os_TE_168096 Chr7 19447764 19447502 + INDITTO 263 0.1514 (452/2986) 1 Intact * Os_TE_168085 Chr7 19446277 19446278 + MPING 430 0.0010 (3/2939) 0 * * Os_TE_168083 Chr7 19446165 19446164 + STOWAWAY51_OS 246 0.0010 (3/2921) 0 * * Os_TE_168080 Chr7 19446009 19446008 + INDITTO 263 0.0061 (16/2633) 0 * * Os_TE_168079 Chr7 19445996 19445997 + MPING 430 0.0025 (7/2847) 0 * * Os_TE_168072 Chr7 19445110 19445111 - RIRE2_LTR 11306 0.0030 (9/2994) 0 * Os_TE_168071 Os_TE_168071 Chr7 19445106 19445105 + RIRE2_LTR 11306 0.0030 (9/2995) 0 * Os_TE_168072 Os_TE_168068 Chr7 19443353 19443354 - RETROSAT4_LTR 13504 0.7227 (2137/2957) 0 * * Os_TE_168048 Chr7 19436217 19436216 - ORSgTEMT00901041 237 0.8469 (2516/2971) 0 * * Os_TE_167989 Chr7 19408770 19408771 - RETRO2_LTR 12874 0.0050 (15/2994) 0 * Os_TE_167988 Os_TE_167988 Chr7 19408766 19408765 + RETRO2_LTR 12874 0.0050 (15/2988) 0 * Os_TE_167989 Os_TE_167870 Chr7 19371882 19371883 + RETRO2A_LTR 12895 0.0848 (253/2985) 0 * Os_TE_167869 Os_TE_167869 Chr7 19371878 19371877 - RETRO1_LTR 8314 0.0833 (247/2964) 0 * Os_TE_167870 Os_TE_167868 Chr7 19370968 19370967 - TRUNCATOR 2918 0.1341 (398/2969) 0 * Os_TE_167867 Os_TE_167867 Chr7 19370967 19370968 + TRUNCATOR 2918 0.1413 (423/2993) 0 * Os_TE_167868 Os_TE_167856 Chr7 19368310 19368311 - ORSgTETNOOT00754 253 0.0003 (1/2986) 0 * Os_TE_167855 Os_TE_167855 Chr7 19368305 19368304 - ORSgTETNOOT00477 252 0.0003 (1/2983) 0 * Os_TE_167856 Os_TE_167832 Chr7 19352711 19352710 - CENTRE 280 0.0027 (8/2951) 0 * * Os_TE_167793 Chr7 19339568 19339569 + ORSgTETNOOT00908 242 0.0003 (1/2989) 0 * * Os_TE_167791 Chr7 19338569 19338568 + ORSgTEMT01601591 242 0.0003 (1/2994) 0 * * Os_TE_167779 Chr7 19337197 19337198 + STOWAWAY44_OS 240 0.0007 (2/2683) 0 * * Os_TE_167740 Chr7 19320296 19320295 + STOWAWAY51_OS 246 0.0003 (1/2971) 0 * * Os_TE_167719 Chr7 19313978 19313979 - AMYLTP 383 0.0010 (3/2991) 0 * Os_TE_167718 Os_TE_167718 Chr7 19313970 19313969 + AMYLTP 383 0.0010 (3/2989) 0 * Os_TE_167719 Os_TE_167716 Chr7 19309439 19309440 - NDNA1TNA_OS 334 0.0010 (3/2996) 0 * * Os_TE_167704 Chr7 19302022 19302023 + RIREX_LTR 8828 0.0003 (1/2988) 0 * Os_TE_167703 Os_TE_167703 Chr7 19302018 19302017 - RIREX_LTR 8828 0.0003 (1/2991) 0 * Os_TE_167704 Os_TE_167702 Chr7 19301449 19301450 - ORSgTERT00201216 11284 0.0794 (236/2972) 0 * Os_TE_167701 Os_TE_167701 Chr7 19301445 19301444 - RIRE2_LTR 11306 0.0768 (228/2968) 0 * Os_TE_167702 Os_TE_167691 Chr7 19294999 19295000 - TYPEM 227 0.0010 (3/2995) 0 * Os_TE_167690 Os_TE_167690 Chr7 19294998 19294997 - ORSgTEMT02400179 221 0.0010 (3/2992) 0 * Os_TE_167691 Os_TE_167681 Chr7 19288268 19288269 + SC-8_LTR 4951 0.0003 (1/2985) 0 * Os_TE_167680 Os_TE_167680 Chr7 19288264 19288263 - SC-8_LTR 4951 0.0003 (1/2981) 0 * Os_TE_167681 Os_TE_167669 Chr7 19283439 19283438 - ORSgTEMT00901723 248 0.7999 (2395/2994) 0 * * Os_TE_167641 Chr7 19268403 19268404 + TWIF 586 0.0102 (28/2733) 0 * Os_TE_167640 Os_TE_167640 Chr7 19268396 19268395 - ORSiTETNOOT00134 607 0.0506 (143/2825) 0 * Os_TE_167641 Os_TE_167631 Chr7 19258242 19258243 + MPING 430 0.0020 (6/2956) 0 * Os_TE_167630 Os_TE_167630 Chr7 19258240 19258239 - MPING 430 0.0020 (6/2961) 0 * Os_TE_167631 Os_TE_167606 Chr7 19244102 19244101 - ORSgTETNOOT01501 171 0.0003 (1/2975) 0 * * Os_TE_167585 Chr7 19232129 19232130 - SC-8_LTR 4951 0.0010 (3/2990) 0 * Os_TE_167584 Os_TE_167584 Chr7 19232125 19232124 + SC-8_LTR 4951 0.0010 (3/2987) 0 * Os_TE_167585 Os_TE_167539 Chr7 19202020 19202021 + INDITTO 263 0.0094 (28/2966) 0 * Os_TE_167538 Os_TE_167538 Chr7 19202018 19202017 - INDITTO 263 0.0094 (28/2979) 0 * Os_TE_167539 Os_TE_167537 Chr7 19201650 19201651 - RETRO1_LTR 8314 0.0027 (8/2991) 0 * Os_TE_167536 Os_TE_167536 Chr7 19201646 19201645 + RETRO2A_LTR 12895 0.0023 (7/2986) 0 * Os_TE_167537 Os_TE_167521 Chr7 19199577 19199578 + INDITTO 263 0.2259 (667/2953) 0 * Os_TE_167520 Os_TE_167520 Chr7 19199575 19199574 - INDITTO 263 0.2281 (675/2959) 0 * Os_TE_167521 Os_TE_167477 Chr7 19186222 19186223 + ORSgTEMT04600037 279 0.0017 (5/2981) 0 * Os_TE_167476 Os_TE_167476 Chr7 19186216 19186215 - ORSgTEMT04600037 279 0.0017 (5/2979) 0 * Os_TE_167477 Os_TE_167475 Chr7 19185877 19185876 - COPIA2-LTR_OS 6433 0.0003 (1/2981) 0 * * Os_TE_167473 Chr7 19185650 19185649 - RETRO2_LTR 12874 0.0003 (1/2954) 0 * * Os_TE_167464 Chr7 19183459 19183458 - ORSgTEMT02400246 177 0.0027 (8/2934) 0 * Os_TE_167463 Os_TE_167463 Chr7 19183458 19183459 - TYPEM 227 0.0024 (7/2948) 0 * Os_TE_167464 Os_TE_167444 Chr7 19162215 19162216 - SC-3_LTR 5748 0.0003 (1/2988) 0 * * Os_TE_167405 Chr7 19156109 19156110 - RETROSAT2LTRA 3112 0.0777 (232/2985) 0 * * Os_TE_167400 Chr7 19154490 19154489 - ORSgTETNOOT02143 185 0.0010 (3/2962) 0 * * Os_TE_167383 Chr7 19151771 19151770 - TRUNCATOR 2918 0.0028 (8/2890) 0 * Os_TE_167382 Os_TE_167382 Chr7 19151770 19151771 + TRUNCATOR 2918 0.0031 (9/2897) 0 * Os_TE_167383 Os_TE_167353 Chr7 19144708 19144709 - RETRO2_LTR 12874 0.0065 (19/2938) 0 * Os_TE_167352 Os_TE_167352 Chr7 19144704 19144703 + RETRO2_LTR 12874 0.0065 (19/2933) 0 * Os_TE_167353 Os_TE_167280 Chr7 19118716 19118717 + STOWAWAY44_OS 240 0.0003 (1/2995) 0 * * Os_TE_167278 Chr7 19118516 19112071 + COPIA2-LTR_OS 6433 0.2041 (609/2984) 1 Intact Os_TE_167277 Os_TE_167277 Chr7 19112071 19118516 - COPIA2-LTR_OS 6433 0.2027 (606/2990) 1 Intact Os_TE_167278 Os_TE_167244 Chr7 19106333 19106334 + HARB-1_OS 5166 0.0781 (231/2958) 0 * Os_TE_167243 Os_TE_167243 Chr7 19106331 19106330 - HARB-1_OS 5166 0.0779 (230/2953) 0 * Os_TE_167244 Os_TE_167234 Chr7 19104588 19104589 - ENSPM3_OS 10837 0.0017 (5/2944) 0 * * Os_TE_167188 Chr7 19085212 19085213 + ORSgTETNOOT00241 236 0.0447 (134/2996) 0 * * Os_TE_167186 Chr7 19082880 19082772 + SINE1OS 127 0.1766 (521/2951) 1 Intact * Os_TE_167129 Chr7 19057125 19057126 - HARB-1_OS 5166 0.0040 (12/2995) 0 * Os_TE_167128 Os_TE_167128 Chr7 19057123 19057122 + HARB-1_OS 5166 0.0043 (13/2992) 0 * Os_TE_167129 Os_TE_167123 Chr7 19056123 19056122 + CASBIG 811 0.0111 (33/2979) 0 * * Os_TE_167096 Chr7 19049233 19049234 + OLO24B 335 0.0020 (5/2460) 0 * * Os_TE_167091 Chr7 19048006 19048007 + SZLTR 1249 0.6141 (1822/2967) 0 * * Os_TE_167044 Chr7 19027129 19027130 + RETRO2A_LTR 12895 0.0027 (8/2979) 0 * * Os_TE_167014 Chr7 19011715 19023027 + RIREX_LTR 8828 0.1771 (524/2959) 1 Intact * Os_TE_166997 Chr7 19009255 19009256 + COPIA2-LTR_OS 6433 0.0004 (1/2673) 0 * Os_TE_166996 Os_TE_166996 Chr7 19009251 19009250 - COPIA2-LTR_OS 6433 0.0004 (1/2648) 0 * Os_TE_166997 Os_TE_166988 Chr7 19007466 19007465 + MPING 430 0.0004 (1/2768) 0 * * Os_TE_166984 Chr7 19006901 19006902 + OSTE33 1012 0.1013 (286/2824) 0 * Os_TE_166983 Os_TE_166983 Chr7 19006892 19006891 + OSTE33 1012 0.1007 (202/2006) 0 * Os_TE_166984 Os_TE_166925 Chr7 18986522 18986521 - ORSgTEMT01400006 213 0.0418 (123/2943) 0 * Os_TE_166924 Os_TE_166924 Chr7 18986516 18986517 - ORSgTEMT01400038 210 0.0469 (139/2961) 0 * Os_TE_166925 Os_TE_166917 Chr7 18985476 18985475 - ORSgTEMT00501568 147 0.0007 (2/2864) 0 * * Os_TE_166866 Chr7 18964038 18964039 + RIREX_LTR 8828 0.0013 (4/2981) 0 * * Os_TE_166847 Chr7 18961567 18961078 - OSTE20 496 0.1829 (523/2859) 1 Intact Os_TE_166846 Os_TE_166846 Chr7 18961077 18961567 - OSTE20 496 0.1814 (518/2856) 1 Intact Os_TE_166847 Os_TE_166844 Chr7 18960548 18960549 + CASTAWAY 364 0.0003 (1/2976) 0 * Os_TE_166843 Os_TE_166843 Chr7 18960546 18960545 - ORSgTEMT00600085 364 0.0003 (1/2981) 0 * Os_TE_166844 Os_TE_166842 Chr7 18960319 18960320 - ORSgTETNOOT00754 253 0.0003 (1/2861) 0 * Os_TE_166841 Os_TE_166841 Chr7 18960317 18960316 + ORSgTETNOOT01998 254 0.0004 (1/2857) 0 * Os_TE_166842 Os_TE_166840 Chr7 18959375 18959374 + CASTAWAY-3 314 0.0007 (2/2984) 0 * * Os_TE_166839 Chr7 18959164 18959165 - ORSgTEMT00500675 140 0.0459 (136/2966) 0 * Os_TE_166838 Os_TE_166838 Chr7 18959162 18959161 - ORSgTETNOOT02245 144 0.0467 (139/2976) 0 * Os_TE_166839 Os_TE_166837 Chr7 18958957 18958956 + ORSgTEMT01400018 210 0.0435 (128/2941) 0 * Os_TE_166836 Os_TE_166836 Chr7 18958954 18958955 + ORSgTEMT01400031 216 0.0379 (111/2926) 0 * Os_TE_166837 Os_TE_166824 Chr7 18955406 18955407 + SPMLIKE 10989 0.0003 (1/2991) 0 * * Os_TE_166784 Chr7 18924637 18924636 + ORSiTERTOOT00088 856 0.0007 (2/2992) 0 * * Os_TE_166783 Chr7 18924255 18924254 - RIRE2_LTR 11306 0.5602 (1670/2981) 0 * * Os_TE_166777 Chr7 18923279 18923280 - MUDRN5_OS 374 0.0013 (4/2984) 0 * Os_TE_166776 Os_TE_166776 Chr7 18923278 18923277 + ORSgTEMT00700017 386 0.0013 (4/2983) 0 * Os_TE_166777 Os_TE_166775 Chr7 18923270 18923271 - ORSgTEMT00700002 381 0.0013 (4/2977) 0 * Os_TE_166774 Os_TE_166774 Chr7 18923269 18923268 + MUDRN5_OS 374 0.0013 (4/2983) 0 * Os_TE_166775 Os_TE_166761 Chr7 18922287 18922286 - NDNA1TNA_OS 334 0.0395 (111/2812) 0 * Os_TE_166760 Os_TE_166760 Chr7 18922273 18922274 - NDNA1TNA_OS 334 0.0340 (95/2791) 0 * Os_TE_166761 Os_TE_166759 Chr7 18920544 18920545 + INDITTO 263 0.2235 (668/2989) 0 * Os_TE_166758 Os_TE_166758 Chr7 18920542 18920541 - INDITTO 263 0.2260 (676/2991) 0 * Os_TE_166759 Os_TE_166754 Chr7 18914734 18914733 + AMYLTP 383 0.0007 (2/2983) 0 * * Os_TE_166731 Chr7 18910304 18910065 + ORSgTEMT01601934 207 0.1820 (540/2967) 1 Intact Os_TE_166730 Os_TE_166730 Chr7 18910065 18910301 + ORSgTEMT01601934 207 0.1507 (434/2879) 1 Intact Os_TE_166731 Os_TE_166729 Chr7 18910029 18910028 + SEVERIN-2 1952 0.0011 (3/2723) 0 * * Os_TE_166727 Chr7 18909755 18909756 + ORSgTEMT00300064 397 0.0124 (35/2830) 0 * * Os_TE_166714 Chr7 18907291 18907290 - ORSgTEMT00901723 248 0.0110 (33/2988) 0 * * Os_TE_166684 Chr7 18895314 18895313 - DS-RICE4N 715 0.0939 (279/2970) 0 * * Os_TE_166663 Chr7 18884908 18884909 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_166662 Os_TE_166662 Chr7 18884904 18884903 + COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_166663 Os_TE_166617 Chr7 18858452 18858451 + RETROFIT7_LTR 4788 0.0008 (2/2610) 0 * * Os_TE_166606 Chr7 18856181 18856182 + COPIA2-LTR_OS 6433 0.0014 (4/2955) 0 * Os_TE_166605 Os_TE_166605 Chr7 18856177 18856176 - COPIA2-LTR_OS 6433 0.0014 (4/2954) 0 * Os_TE_166606 Os_TE_166563 Chr7 18838690 18838348 - ORSgTEMT00100578 341 0.2193 (649/2960) 1 Intact Os_TE_166560 Os_TE_166560 Chr7 18838349 18838687 + NDNA1TNA_OS 334 0.2095 (614/2931) 1 Intact Os_TE_166563 Os_TE_166558 Chr7 18837659 18837660 - TELIA 141 0.0007 (2/2941) 0 * Os_TE_166557 Os_TE_166557 Chr7 18837652 18837651 + TELIA 141 0.0007 (2/2939) 0 * Os_TE_166558 Os_TE_166555 Chr7 18837454 18837192 - INDITTO 263 0.2167 (640/2953) 1 Intact Os_TE_166554 Os_TE_166554 Chr7 18837192 18837454 + INDITTO 263 0.2151 (637/2961) 1 Intact Os_TE_166555 Os_TE_166525 Chr7 18831170 18831169 + COPI2_LTR 4733 0.0003 (1/2998) 0 * * Os_TE_166521 Chr7 18823180 18823181 - ORSgTEMT02400179 221 0.0110 (33/2998) 0 * * Os_TE_166509 Chr7 18818141 18813960 - ORSiTERTOOT00373 4137 0.6401 (1914/2990) 1 Intact Os_TE_166501 Os_TE_166501 Chr7 18813959 18818141 + ORSiTERTOOT00373 4137 0.5936 (1607/2707) 1 Intact Os_TE_166509 Os_TE_166500 Chr7 18813391 18813392 - TRUNCATOR2_LTR 2904 0.1620 (404/2494) 0 * Os_TE_166499 Os_TE_166499 Chr7 18813387 18813386 + ORSiCMCM00100019 2717 0.0617 (140/2269) 0 * Os_TE_166500 Os_TE_166492 Chr7 18809225 18809226 + TRUNCATOR2_LTR 2904 0.0154 (46/2988) 0 * Os_TE_166491 Os_TE_166491 Chr7 18809221 18809220 - TRUNCATOR2_LTR 2904 0.0161 (48/2988) 0 * Os_TE_166492 Os_TE_166488 Chr7 18805180 18805179 - MPING 430 0.0010 (3/2986) 0 * * Os_TE_166483 Chr7 18800876 18800875 + ORSgTEMT00501795 147 0.7245 (2077/2867) 0.8 * * Os_TE_166480 Chr7 18798826 18798827 - MPING 430 0.0003 (1/2978) 0 * Os_TE_166479 Os_TE_166479 Chr7 18798824 18798823 + MPING 430 0.0003 (1/2978) 0 * Os_TE_166480 Os_TE_166478 Chr7 18797785 18798642 - MUDRN1_OS 764 0.1898 (560/2951) 1 Intact * Os_TE_166468 Chr7 18796977 18796976 - STOWAWAY51_OS 246 0.0013 (4/2984) 0 * * Os_TE_166467 Chr7 18796971 18796972 + STOWAWAY51_OS 246 0.0087 (26/2983) 0 * * Os_TE_166463 Chr7 18794290 18794289 - ORSgTEMT02600002 356 0.0194 (34/1753) 0 * * Os_TE_166462 Chr7 18794287 18794288 - ORSgTEMT00101174 225 0.8172 (2445/2992) 0.06 * * Os_TE_166460 Chr7 18793785 18793786 + ORSgTEMT01701311 142 0.0114 (34/2983) 0 * * Os_TE_166458 Chr7 18793461 18793460 + COWARD-3 221 0.7988 (2239/2803) 0 * * Os_TE_166451 Chr7 18792412 18793449 + SINE03_OS 360 0.1951 (577/2957) 1 Intact * Os_TE_166448 Chr7 18790941 18790940 - ORSgTETN00200001 10994 0.0193 (57/2956) 0 * Os_TE_166447 Os_TE_166447 Chr7 18790940 18790941 + CACTA-B 1103 0.0203 (60/2960) 0 * Os_TE_166448 Os_TE_166426 Chr7 18777744 18789954 + RETRO2_LTR 12874 0.1628 (456/2801) 1 Intact * Os_TE_166424 Chr7 18777240 18777239 - STOWAWAY21_OS 243 0.0111 (33/2971) 0 * * Os_TE_166423 Chr7 18777239 18777240 - STOWAWAY51_OS 246 0.0003 (1/2979) 0 * * Os_TE_166422 Chr7 18776500 18776501 + SEVERIN-2 1952 0.0017 (5/2964) 0 * * Os_TE_166408 Chr7 18768317 18768318 + MERMITEB 1610 0.8101 (2418/2985) 0 * Os_TE_166407 Os_TE_166407 Chr7 18768313 18768312 + MERMITEB 1610 0.8070 (2262/2803) 0 * Os_TE_166408 Os_TE_166358 Chr7 18746497 18746498 + ORSiTERTOOT00034 791 0.0003 (1/2997) 0 * * Os_TE_166327 Chr7 18732669 18732670 + ORSiTERTOOT00296 5553 0.3090 (917/2968) 0 * Os_TE_166326 Os_TE_166326 Chr7 18732665 18732664 - SC-3_LTR 5748 0.3089 (917/2969) 0 * Os_TE_166327 Os_TE_166322 Chr7 18730764 18730765 - SC-3_LTR 5748 0.0004 (1/2810) 0 * * Os_TE_166316 Chr7 18727889 18727888 + ORSgTEMT01601122 212 0.0111 (33/2985) 0 * * Os_TE_166312 Chr7 18726187 18726188 - GYPSY-A_LTR 8951 0.0007 (2/2908) 0 * Os_TE_166311 Os_TE_166311 Chr7 18726183 18726182 + GYPSY-A_LTR 8951 0.0007 (2/2901) 0 * Os_TE_166312 Os_TE_166303 Chr7 18725896 18725897 - RETROSAT2LTR 12796 0.0004 (1/2822) 0 * * Os_TE_166275 Chr7 18710243 18710244 + ORSgTEMT00502261 144 0.0107 (32/2991) 0 * * Os_TE_166267 Chr7 18705406 18705407 - TYPEH 309 0.0017 (5/2979) 0 * Os_TE_166266 Os_TE_166266 Chr7 18705403 18705402 + ORSgTEMT01900030 288 0.0017 (5/2982) 0 * Os_TE_166267 Os_TE_166264 Chr7 18705160 18705159 - CACTA-M 1129 0.0017 (5/2990) 0 * Os_TE_166263 Os_TE_166263 Chr7 18705159 18705160 + CACTA-B 1103 0.0017 (5/2963) 0 * Os_TE_166264 Os_TE_166260 Chr7 18704139 18704138 - TNR11 811 0.0017 (5/2976) 0 * * Os_TE_166258 Chr7 18702984 18702983 + TREP215 239 0.0017 (5/2928) 0 * Os_TE_166257 Os_TE_166257 Chr7 18702981 18702982 - ORSgTEMT01600750 238 0.0014 (4/2949) 0 * Os_TE_166258 Os_TE_166244 Chr7 18697780 18697781 + ORSiTETN00100011 676 0.5748 (1709/2973) 0 * Os_TE_166243 Os_TE_166243 Chr7 18697768 18697767 + DS-RICE4N 715 0.5566 (1632/2932) 0 * Os_TE_166244 Os_TE_166232 Chr7 18696752 18696753 + ORSgTEMT01601122 212 0.0099 (29/2927) 0 * * Os_TE_166223 Chr7 18695856 18695855 - ORSgTEMT01601208 238 0.0098 (29/2949) 0 * Os_TE_166222 Os_TE_166222 Chr7 18695853 18695854 - ORSgTEMT01600639 228 0.0101 (30/2960) 0 * Os_TE_166223 Os_TE_166218 Chr7 18694065 18694066 + TNR12 528 0.0093 (27/2918) 0 * Os_TE_166217 Os_TE_166217 Chr7 18694058 18694057 - TNR12 528 0.0096 (28/2907) 0 * Os_TE_166218 Os_TE_166198 Chr7 18683366 18682197 + SETARIA1 1293 0.2630 (785/2985) 1 Intact Os_TE_166197 Os_TE_166197 Chr7 18682195 18683366 + SETARIA2 1142 0.2616 (779/2978) 1 Intact Os_TE_166198 Os_TE_166188 Chr7 18677788 18677787 - ORSiTEMT01300001 950 0.0009 (2/2313) 0 * * Os_TE_166162 Chr7 18666916 18666915 + ORSgTEMT01602119 229 0.0017 (5/2977) 0 * * Os_TE_166157 Chr7 18661840 18661839 - ORSgTEMT00901071 248 0.0017 (5/2949) 0 * * Os_TE_166146 Chr7 18654917 18654916 - ORSgTEMT01400006 213 0.0081 (24/2953) 0 * Os_TE_166145 Os_TE_166145 Chr7 18654912 18654913 + ORSgTEMT01400024 215 0.0075 (22/2951) 0 * Os_TE_166146 Os_TE_166126 Chr7 18645334 18645333 - TYPEM 227 0.0007 (2/2998) 0 * * Os_TE_166123 Chr7 18643777 18643776 + SINE1OS 127 0.0017 (5/2999) 0 * * Os_TE_166122 Chr7 18642859 18642860 - MPING 430 0.0054 (16/2976) 0 * Os_TE_166121 Os_TE_166121 Chr7 18642857 18642856 + MPING 430 0.0054 (16/2982) 0 * Os_TE_166122 Os_TE_166115 Chr7 18642393 18642394 + RIREX_LTR 8828 0.0003 (1/2948) 0 * Os_TE_166114 Os_TE_166114 Chr7 18642389 18642388 - RIREX_LTR 8828 0.0003 (1/2954) 0 * Os_TE_166115 Os_TE_166112 Chr7 18640399 18640398 - ORSgTEMT01600747 238 0.0017 (5/2897) 0 * Os_TE_166111 Os_TE_166111 Chr7 18640396 18640397 + ORSgTEMT01601049 237 0.0010 (3/2889) 0 * Os_TE_166112 Os_TE_166110 Chr7 18639843 18639844 - ORSgTEMT03800066 376 0.0021 (5/2382) 0 * Os_TE_166109 Os_TE_166109 Chr7 18639841 18639840 + BUHUI 375 0.0021 (5/2388) 0 * Os_TE_166110 Os_TE_166092 Chr7 18624654 18624655 + TNR12 528 0.0007 (2/2985) 0 * * Os_TE_166090 Chr7 18621285 18621286 + TWIFBIG 3567 0.0023 (7/2992) 0 * Os_TE_166089 Os_TE_166089 Chr7 18621278 18621277 - ORSiTETNOOT00216 3569 0.0027 (8/2992) 0 * Os_TE_166090 Os_TE_166085 Chr7 18617450 18617114 + NDNA1TNA_OS 334 0.2406 (719/2988) 1 Intact Os_TE_166083 Os_TE_166083 Chr7 18617112 18617452 + ORSgTEMT00100531 325 0.2397 (713/2975) 1 Intact Os_TE_166085 Os_TE_166045 Chr7 18607357 18607358 - RETRO1_LTR 8314 0.0027 (8/2995) 0 * Os_TE_166044 Os_TE_166044 Chr7 18607353 18607352 + RETRO1_LTR 8314 0.0027 (8/2990) 0 * Os_TE_166045 Os_TE_166027 Chr7 18598591 18598592 - SC-3_LTR 5748 0.0040 (12/2995) 0 * Os_TE_166026 Os_TE_166026 Chr7 18598587 18598586 + ORSiTERTOOT00296 5553 0.0040 (12/2993) 0 * Os_TE_166027 Os_TE_166020 Chr7 18596829 18596828 - ORSgTEMT02400246 177 0.3457 (1014/2933) 0 * * Os_TE_166008 Chr7 18591121 18591122 - SC-8_LTR 4951 0.0031 (9/2950) 0 * Os_TE_166007 Os_TE_166007 Chr7 18591117 18591116 + ORSiTERTOOT00381 4988 0.0027 (8/2945) 0 * Os_TE_166008 Os_TE_165990 Chr7 18585299 18585300 + SZ-62LTR 3649 0.0113 (34/2998) 0 * Os_TE_165989 Os_TE_165989 Chr7 18585295 18585294 - SZ-62LTR 3649 0.0113 (34/2998) 0 * Os_TE_165990 Os_TE_165986 Chr7 18584728 18584727 - RETRO2_LTR 12874 0.0027 (8/2990) 0 * * Os_TE_165955 Chr7 18560466 18560467 + ORSiTERTOOT00296 5553 0.0007 (2/2979) 0 * Os_TE_165954 Os_TE_165954 Chr7 18560462 18560461 - SC-3_LTR 5748 0.0007 (2/2985) 0 * Os_TE_165955 Os_TE_165950 Chr7 18558366 18558367 + ORSiTERTOOT00296 5553 0.0003 (1/2985) 0 * Os_TE_165949 Os_TE_165949 Chr7 18558362 18558361 - SC-3_LTR 5748 0.0003 (1/2984) 0 * Os_TE_165950 Os_TE_165927 Chr7 18549851 18549850 - AMYLTP 383 0.0866 (249/2876) 0 * * Os_TE_165912 Chr7 18542772 18542771 + RIREX_LTR 8828 0.0003 (1/2884) 0 * * Os_TE_165892 Chr7 18532512 18532513 - TEMPINDAS 4259 0.6099 (1804/2958) 0 * Os_TE_165891 Os_TE_165891 Chr7 18532505 18532504 + TEMPINDAS 4259 0.6151 (1828/2972) 0 * Os_TE_165892 Os_TE_165883 Chr7 18531838 18531837 + ORSgTEMT01601122 212 0.1613 (409/2535) 0 * Os_TE_165882 Os_TE_165882 Chr7 18531837 18531838 + STOWAWAY21_OS 243 0.1666 (387/2323) 0 * Os_TE_165883 Os_TE_165868 Chr7 18525520 18525519 - TRUNCATOR 2918 0.0003 (1/2977) 0 * * Os_TE_165834 Chr7 18517716 18517715 - SZLTR 1249 0.0008 (2/2525) 0 * * Os_TE_165820 Chr7 18508286 18508287 + RETRO2A_LTR 12895 0.0027 (8/2967) 0 * Os_TE_165819 Os_TE_165819 Chr7 18508282 18508281 - RETRO1_LTR 8314 0.0027 (8/2975) 0 * Os_TE_165820 Os_TE_165807 Chr7 18499640 18499244 + COPI2_LTR 4733 0.4479 (654/1460) 1 Intact Os_TE_165805 Os_TE_165805 Chr7 18499244 18499640 - COPI2_LTR 4733 0.3710 (650/1752) 1 Intact Os_TE_165807 Os_TE_165802 Chr7 18496472 18496471 - COPI2_LTR 4733 0.0006 (1/1727) 0 * * Os_TE_165799 Chr7 18496031 18496030 - ORSiTERTOOT00291 11421 0.1833 (321/1751) 0 * * Os_TE_165798 Chr7 18495980 18495981 + COPIA2-LTR_OS 6433 0.0006 (1/1760) 0 * Os_TE_165797 Os_TE_165797 Chr7 18495976 18495975 - COPIA2-LTR_OS 6433 0.0006 (1/1719) 0 * Os_TE_165798 Os_TE_165795 Chr7 18490353 18490352 + TREP215 239 0.1648 (285/1729) 0 * * Os_TE_165793 Chr7 18489994 18488686 + SZ-14LTR 1193 0.8326 (1457/1750) 1 Intact Os_TE_165790 Os_TE_165790 Chr7 18488686 18489972 - SZ-9LTR 965 0.8822 (1483/1681) 1 Intact Os_TE_165793 Os_TE_165776 Chr7 18482944 18482943 - ORSgTEMT01602413 239 0.5119 (1463/2858) 0 * * Os_TE_165774 Chr7 18482752 18481435 + SZ-30_LTR 6377 0.5010 (1442/2878) 1 Solo_LTR Os_TE_165769 Os_TE_165769 Chr7 18481435 18482752 - SZ-30_LTR 6377 0.4970 (1428/2873) 1 Solo_LTR Os_TE_165774 Os_TE_165767 Chr7 18481131 18481130 - ORSgTEMT01600032 240 0.4900 (1353/2761) 0 * * Os_TE_165756 Chr7 18477862 18477863 + Cassandra_OS-LTR 764 0.0582 (151/2596) 0 * * Os_TE_165747 Chr7 18476385 18476386 - AMYLTP 383 0.1585 (453/2858) 0 * Os_TE_165746 Os_TE_165746 Chr7 18476377 18476376 + AMYLTP 383 0.1599 (459/2870) 0 * Os_TE_165747 Os_TE_165744 Chr7 18473857 18473858 + ORSgTETNOOT01219 231 0.0008 (2/2440) 0 * Os_TE_165743 Os_TE_165743 Chr7 18473848 18473847 + ORSgTETNOOT00908 242 0.1115 (319/2861) 0 * Os_TE_165744 Os_TE_165724 Chr7 18462206 18462207 + COPIA2-LTR_OS 6433 0.0007 (2/2822) 0 * Os_TE_165723 Os_TE_165723 Chr7 18462202 18462201 - COPIA2-LTR_OS 6433 0.0007 (2/2903) 0 * Os_TE_165724 Os_TE_165721 Chr7 18461640 18461639 + COPIA2-LTR_OS 6433 0.0003 (1/2951) 0 * * Os_TE_165708 Chr7 18454851 18454852 + RIREX_LTR 8828 0.0004 (1/2610) 0 * Os_TE_165707 Os_TE_165707 Chr7 18454847 18454846 - RIREX_LTR 8828 0.0004 (1/2609) 0 * Os_TE_165708 Os_TE_165650 Chr7 18434856 18434857 + TRUNCATOR2_LTR 2904 0.0004 (1/2628) 0 * * Os_TE_165635 Chr7 18420250 18420251 - RIREX_LTR 8828 0.0004 (1/2645) 0 * Os_TE_165634 Os_TE_165634 Chr7 18420246 18420245 + RIREX_LTR 8828 0.0004 (1/2643) 0 * Os_TE_165635 Os_TE_165631 Chr7 18417515 18417516 - ORSgTEMT01602592 236 0.0154 (41/2662) 0 * * Os_TE_165630 Chr7 18416640 18416641 + ORSiTERTOOT00004 4000 0.0004 (1/2638) 0 * * Os_TE_165629 Chr7 18415948 18415949 - ORSiTETNOOT00200 3563 0.5493 (1404/2556) 0 * Os_TE_165628 Os_TE_165628 Chr7 18415941 18415940 + TWIFBIG 3567 0.5271 (1313/2491) 0 * Os_TE_165629 Os_TE_165617 Chr7 18410299 18410298 - ORSgTEMT02400246 177 0.1094 (328/2997) 0 * * Os_TE_165596 Chr7 18393779 18393780 - CACTA-M 1129 0.1022 (301/2944) 0 * * Os_TE_165595 Chr7 18393670 18393671 - ORSgTETN00200001 10994 0.0026 (7/2695) 0 * * Os_TE_165559 Chr7 18375517 18375518 - TEMPINDAS 4259 0.0018 (2/1082) 0 * * Os_TE_165557 Chr7 18374027 18374028 + RIREX_LTR 8828 0.0017 (2/1157) 0 * * Os_TE_165546 Chr7 18368812 18368399 + ORSgTEMT00300063 413 0.0856 (246/2874) 1 Intact Os_TE_165545 Os_TE_165545 Chr7 18368393 18368810 + ORSgTEMT00300069 394 0.1159 (253/2182) 1 Intact Os_TE_165546 Os_TE_165544 Chr7 18368206 18366768 + MERMITEA 1710 0.5018 (1411/2812) 1 Intact * Os_TE_165541 Chr7 18366484 18366485 + ORSgTEMT01601422 235 0.0933 (268/2873) 0 * * Os_TE_165537 Chr7 18364244 18363970 - TYPEH 309 0.7756 (1424/1836) 1 Intact * Os_TE_165529 Chr7 18361031 18361208 + ORSgTEMT02400009 192 0.4700 (1403/2985) 1 Intact * Os_TE_165502 Chr7 18355888 18355889 - MuDR3_OS 8604 0.2584 (559/2163) 0 * Os_TE_165501 Os_TE_165501 Chr7 18355879 18355878 - MuDR3_OS 8604 0.2394 (504/2105) 0 * Os_TE_165502 Os_TE_165486 Chr7 18345814 18345815 + SC-8_LTR 4951 0.0003 (1/2985) 0 * Os_TE_165485 Os_TE_165485 Chr7 18345810 18345809 - SC-8_LTR 4951 0.0003 (1/2988) 0 * Os_TE_165486 Os_TE_165481 Chr7 18341355 18341356 + OSR3_LTR 5201 0.0017 (5/2968) 0 * * Os_TE_165470 Chr7 18334132 18334133 + MPING 430 0.0007 (2/2864) 0 * * Os_TE_165464 Chr7 18330239 18330238 + SC-4_LTR 5218 0.0007 (2/2995) 0 * * Os_TE_165452 Chr7 18327319 18327318 + STOWAWAY51_OS 246 0.0003 (1/2981) 0 * Os_TE_165451 Os_TE_165451 Chr7 18327313 18327314 - STOWAWAY51_OS 246 0.0003 (1/2987) 0 * Os_TE_165452 Os_TE_165447 Chr7 18325871 18325872 - OLO24 345 0.0003 (1/2997) 0 * * Os_TE_165444 Chr7 18325125 18325124 - SC-8_LTR 4951 0.0004 (1/2469) 0 * * Os_TE_165439 Chr7 18322126 18322125 - ORSgTEMT02400179 221 0.0910 (271/2978) 0 * * Os_TE_165434 Chr7 18318198 18318197 - SC-3_LTR 5748 0.0013 (4/2988) 0 * * Os_TE_165415 Chr7 18312550 18312551 - COPI2_LTR 4733 0.0010 (3/2988) 0 * Os_TE_165414 Os_TE_165414 Chr7 18312546 18312545 + COPI2_LTR 4733 0.0010 (3/2990) 0 * Os_TE_165415 Os_TE_165411 Chr7 18309870 18309871 - ORSgTEMT01601208 238 0.0004 (1/2341) 0 * * Os_TE_165410 Chr7 18309664 18309665 - ORSiTETNOOT00134 607 0.0004 (1/2548) 0 * * Os_TE_165406 Chr7 18308187 18308186 - SZ-22_LTR 4403 0.0005 (1/1969) 0 * * Os_TE_165381 Chr7 18270206 18270207 + DS-RICE3N 525 0.6250 (1775/2840) 0 * * Os_TE_165380 Chr7 18269876 18269877 + ORSiTERTOOT00363 4650 0.4970 (1485/2988) 0 * Os_TE_165379 Os_TE_165379 Chr7 18269872 18269871 - ORSiTERTOOT00363 4650 0.4967 (1483/2986) 0 * Os_TE_165380 Os_TE_165374 Chr7 18268442 18268441 + SC-1_LTR 6888 0.0539 (161/2989) 0 * * Os_TE_165353 Chr7 18250842 18250353 - OSTE20 496 0.3757 (1085/2888) 1 Intact * Os_TE_165346 Chr7 18248742 18248743 - ORSgTERT00201216 11284 0.0017 (5/2939) 0 * Os_TE_165345 Os_TE_165345 Chr7 18248738 18248737 - RIRE2_LTR 11306 0.0017 (5/2939) 0 * Os_TE_165346 Os_TE_165344 Chr7 18248590 18248591 - RIRE2_LTR 11306 0.0003 (1/2956) 0 * Os_TE_165343 Os_TE_165343 Chr7 18248586 18248585 + RIRE2_LTR 11306 0.0003 (1/2954) 0 * Os_TE_165344 Os_TE_165340 Chr7 18248303 18248304 - ORSgTEMT01601208 238 0.0004 (1/2843) 0 * * Os_TE_165335 Chr7 18247797 18247031 - MUDRN1_OS 764 0.3493 (926/2651) 1 Intact Os_TE_165334 Os_TE_165334 Chr7 18247031 18247797 + MUDRN1_OS 764 0.4032 (1144/2837) 1 Intact Os_TE_165335 Os_TE_165330 Chr7 18245116 18244350 + MUDRN1_OS 764 0.3844 (1149/2989) 1 Intact Os_TE_165328 Os_TE_165328 Chr7 18244342 18245115 - MUDRN1_OS 764 0.3805 (1134/2980) 1 Intact Os_TE_165330 Os_TE_165280 Chr7 18222260 18221734 + ORSgTETNOOT02316 263 0.5168 (1538/2976) 1 Intact Os_TE_165275 Os_TE_165275 Chr7 18221734 18222260 - INDITTO 263 0.5189 (1541/2970) 1 Intact Os_TE_165280 Os_TE_165273 Chr7 18221558 18221557 - INDITTO 263 0.0003 (1/2976) 0 * * Os_TE_165272 Chr7 18221285 18221286 - INDITTO 263 0.0007 (2/2987) 0 * * Os_TE_165243 Chr7 18210899 18210900 + ORSiTERTOOT00296 5553 0.0003 (1/2936) 0 * * Os_TE_165225 Chr7 18203411 18168704 - ORSgTETN00200001 10994 0.3876 (1146/2957) 1 Intact Os_TE_165205 Os_TE_165205 Chr7 18168701 18203411 + CACTA-B 1103 0.3843 (1136/2956) 1 Intact Os_TE_165225 Os_TE_165149 Chr7 18148600 18148601 + INDITTO 263 0.0090 (26/2895) 0 * * Os_TE_165093 Chr7 18133216 18133217 - INDITTO 263 0.0966 (237/2454) 0 * Os_TE_165092 Os_TE_165092 Chr7 18133214 18133213 + INDITTO 263 0.1042 (258/2477) 0 * Os_TE_165093 Os_TE_165073 Chr7 18124442 18124443 + TRUNCATOR 2918 0.0018 (5/2835) 0 * * Os_TE_165064 Chr7 18122327 18122328 + JOUZHENA 607 0.0007 (2/2867) 0 * Os_TE_165063 Os_TE_165063 Chr7 18122320 18122319 - JOUZHENA 607 0.0007 (2/2732) 0 * Os_TE_165064 Os_TE_165017 Chr7 18116508 18116509 - STOWAWAY44_OS 240 0.0007 (2/2874) 0 * * Os_TE_165006 Chr7 18113264 18113265 - OSCOPIA1_LTR 4754 0.0532 (159/2990) 0 * * Os_TE_164888 Chr7 17958787 17958788 + JOUZHENA 607 0.3668 (1041/2838) 0 * * Os_TE_164876 Chr7 17957228 17955754 + ORSgTEMT00901798 232 0.6103 (1801/2951) 1 Intact Os_TE_164864 Os_TE_164864 Chr7 17955752 17957217 - ORSgTEMT00900760 239 0.6211 (1803/2903) 1 Intact Os_TE_164876 Os_TE_164862 Chr7 17954732 17955168 + CASGRANDA 465 0.8267 (1527/1847) 1 Intact * Os_TE_164839 Chr7 17947385 17947386 + TELIA 141 0.0210 (49/2333) 0 * * Os_TE_164837 Chr7 17945543 17945544 + ORSgTEMT00300063 413 0.0022 (4/1819) 0 * * Os_TE_164804 Chr7 17926820 17926819 + ORSiTERTOOT00226 792 0.0005 (1/1901) 0 * * Os_TE_164772 Chr7 17912119 17912120 + ORSgTEMT00501629 149 0.4061 (1211/2982) 0 * * Os_TE_164768 Chr7 17907175 17907174 + INDITTO 263 0.3625 (1051/2899) 0 * * Os_TE_164764 Chr7 17906217 17906218 + DS-RICE4N 715 0.0891 (155/1739) 0 * * Os_TE_164758 Chr7 17903949 17903712 - ORSgTEMT01601208 238 0.6035 (1772/2936) 1 Intact * Os_TE_164746 Chr7 17899984 17899983 + RIREX_LTR 8828 0.0005 (1/1887) 0 * * Os_TE_164745 Chr7 17899018 17899017 + STOWAWAY11_OS 292 0.4316 (1228/2845) 0 * Os_TE_164744 Os_TE_164744 Chr7 17899016 17899017 - STOWAWAY11_OS 292 0.3955 (1078/2726) 0 * Os_TE_164745 Os_TE_164732 Chr7 17888970 17888971 - ORSgTEMT00502258 148 0.0027 (5/1838) 0 * Os_TE_164731 Os_TE_164731 Chr7 17888968 17888967 - GAIJIN 147 0.0013 (4/2988) 0 * Os_TE_164732 Os_TE_164719 Chr7 17886311 17886312 - SC-3_LTR 5748 0.0003 (1/2892) 0 * Os_TE_164718 Os_TE_164718 Chr7 17886307 17886306 + ORSiTERTOOT00296 5553 0.0003 (1/2991) 0 * Os_TE_164719 Os_TE_164716 Chr7 17883441 17883442 - ORSiTERTOOT00254 1927 0.0003 (1/2976) 0 * * Os_TE_164700 Chr7 17875066 17875067 - SC-8_LTR 4951 0.0003 (1/2986) 0 * Os_TE_164699 Os_TE_164699 Chr7 17875062 17875061 + SC-8_LTR 4951 0.0003 (1/2988) 0 * Os_TE_164700 Os_TE_164668 Chr7 17865735 17865960 + ORSgTETNOOT00908 242 0.5551 (1556/2803) 1 Intact * Os_TE_164654 Chr7 17855331 17855332 + RIREX_LTR 8828 0.0004 (1/2626) 0 * * Os_TE_164620 Chr7 17832351 17832352 + RIRE3A_LTR 10580 0.0368 (110/2987) 0 * Os_TE_164619 Os_TE_164619 Chr7 17832347 17832346 - RIRE3A_LTR 10580 0.0369 (110/2978) 0 * Os_TE_164620 Os_TE_164614 Chr7 17830706 17830707 + ORSiTERTOOT00027 10853 0.1601 (479/2992) 0 * * Os_TE_164612 Chr7 17830141 17830140 - TRUNCATOR 2918 0.0017 (5/2995) 0 * Os_TE_164611 Os_TE_164611 Chr7 17830140 17830141 + TRUNCATOR 2918 0.0017 (5/2994) 0 * Os_TE_164612 Os_TE_164601 Chr7 17825664 17825665 + AMYLTP 383 0.1434 (427/2978) 0 * Os_TE_164600 Os_TE_164600 Chr7 17825656 17825655 - AMYLTP 383 0.1390 (412/2964) 0 * Os_TE_164601 Os_TE_164577 Chr7 17812188 17812189 - SZ-62LTR 3649 0.0017 (5/2890) -1 * Os_TE_164576 Os_TE_164576 Chr7 17812184 17812183 + SZ-62LTR 3649 0.0017 (5/2889) -1 * Os_TE_164577 Os_TE_164566 Chr7 17809015 17809016 - INDITTO 263 0.0097 (29/2980) 0 * Os_TE_164565 Os_TE_164565 Chr7 17809013 17809012 + INDITTO 263 0.0097 (29/2986) 0 * Os_TE_164566 Os_TE_164564 Chr7 17808725 17808726 + INDITTO 263 0.0050 (15/2974) 0 * Os_TE_164563 Os_TE_164563 Chr7 17808723 17808722 - INDITTO 263 0.0044 (13/2950) 0 * Os_TE_164564 Os_TE_164528 Chr7 17796838 17796837 + SZ-48LTR 3632 0.6354 (1309/2060) -1 * * Os_TE_164515 Chr7 17791999 17791998 - STOWAWAY51_OS 246 0.0003 (1/2979) 0 * * Os_TE_164479 Chr7 17774829 17774830 - RETROSAT4_LTR 13504 0.0003 (1/2989) 0 * Os_TE_164478 Os_TE_164478 Chr7 17774825 17774824 + RETROSAT4_LTR 13504 0.0003 (1/2987) 0 * Os_TE_164479 Os_TE_164424 Chr7 17760170 17760171 - COPIA2-LTR_OS 6433 0.0003 (1/2984) 0 * Os_TE_164423 Os_TE_164423 Chr7 17760166 17760165 + COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * Os_TE_164424 Os_TE_164422 Chr7 17760115 17760116 + ORSiTERTOOT00028 8600 0.2958 (880/2975) 0 * Os_TE_164421 Os_TE_164421 Chr7 17760111 17760110 - TRUNCATOR2_LTR 2904 0.3014 (900/2986) 0 * Os_TE_164422 Os_TE_164345 Chr7 17720943 17720944 - RIRE3_LTR 12054 0.2984 (880/2949) 0 * * Os_TE_164294 Chr7 17712056 17712055 + SPMLIKE 10989 0.0003 (1/2968) 0 * * Os_TE_164206 Chr7 17676173 17676172 + HARB-N1_OS 2589 0.1778 (474/2666) -1 * * Os_TE_164203 Chr7 17675489 17675490 + RIREX_LTR 8828 0.2697 (801/2970) 0 * Os_TE_164202 Os_TE_164202 Chr7 17675485 17675484 - RIRE2_LTR 11306 0.2657 (785/2955) 0 * Os_TE_164203 Os_TE_164191 Chr7 17668205 17668206 + ORSgTETNOOT00221 261 0.0014 (4/2955) 0 * Os_TE_164190 Os_TE_164190 Chr7 17668203 17668202 + INDITTO 263 0.0013 (4/2965) 0 * Os_TE_164191 Os_TE_164189 Chr7 17666947 17655767 - ORSgTETN00200001 10994 0.5667 (1687/2977) 1 Intact * Os_TE_164167 Chr7 17652434 17652171 - ORSgTETNOOT01337 247 0.7715 (1914/2481) 1 Intact * Os_TE_164163 Chr7 17651651 17651652 - ORSgTETNOOT01930 140 0.2040 (588/2882) 0 * Os_TE_164162 Os_TE_164162 Chr7 17651649 17651648 + ORSgTETNOOT01930 140 0.2039 (589/2889) 0 * Os_TE_164163 Os_TE_164154 Chr7 17648049 17648312 + STOWAWAY45_OS 266 0.7638 (1934/2532) 1 Intact * Os_TE_164146 Chr7 17644087 17644463 + ORSgTEMT03000039 377 0.8527 (1731/2030) 1 Intact * Os_TE_164137 Chr7 17637756 17637757 + ORSiTERTOOT00291 11421 0.4571 (1347/2947) 0 * Os_TE_164136 Os_TE_164136 Chr7 17637752 17637751 - SZ-7A_LTR 11400 0.4439 (1294/2915) -1 * Os_TE_164137 Os_TE_164133 Chr7 17636880 17636420 + ORSgTEMT00300069 394 0.5744 (1711/2979) 1 Intact * Os_TE_164121 Chr7 17633945 17633064 + ORSgTEMT00100736 333 0.8105 (1737/2143) 1 Intact * Os_TE_164114 Chr7 17633013 17633012 - SZ-22_LTR 4403 0.0005 (1/2039) 0 * * Os_TE_164098 Chr7 17629807 17629808 + COPI2_LTR 4733 0.0006 (1/1726) 0 * Os_TE_164097 Os_TE_164097 Chr7 17629803 17629802 - COPI2_LTR 4733 0.0006 (1/1730) 0 * Os_TE_164098 Os_TE_164091 Chr7 17624618 17623713 - SZ-42LTR 958 0.8526 (1620/1900) 1 Intact * Os_TE_164079 Chr7 17620990 17620989 + COPI2_LTR 4733 0.0006 (1/1720) 0 * * Os_TE_164022 Chr7 17589136 17589137 - TRUNCATOR2_LTR 2904 0.0006 (1/1741) 0 * Os_TE_164021 Os_TE_164021 Chr7 17589132 17589131 + TRUNCATOR2_LTR 2904 0.0006 (1/1744) 0 * Os_TE_164022 Os_TE_163994 Chr7 17576252 17576253 - RIREX_LTR 8828 0.0031 (9/2888) 0 * Os_TE_163993 Os_TE_163993 Chr7 17576248 17576247 + RIREX_LTR 8828 0.0045 (10/2231) 0 * Os_TE_163994 Os_TE_163992 Chr7 17575910 17575911 + STOWAWAY45_OS 266 0.3202 (789/2464) 0 * * Os_TE_163906 Chr7 17537903 17537904 + ORSgTEMT00501035 149 0.0003 (1/2915) 0 * * Os_TE_163894 Chr7 17529352 17529353 - COWARD-3 221 0.4462 (1322/2963) 0 * * Os_TE_163886 Chr7 17523102 17523103 + ORSgTEMT00500385 153 0.0005 (1/1891) 0 * * Os_TE_163884 Chr7 17522571 17522570 + ORSgTEMT00500201 140 0.4478 (1330/2970) 0 * * Os_TE_163881 Chr7 17522036 17522037 + ORSgTEMT00600192 355 0.4418 (1310/2965) 0 * Os_TE_163880 Os_TE_163880 Chr7 17522035 17522034 - ORSgTEMT00600192 355 0.4422 (1317/2978) 0 * Os_TE_163881 Os_TE_163879 Chr7 17521874 17521875 - ORSgTEMT00600304 361 0.4398 (1311/2981) 0 * * Os_TE_163867 Chr7 17518000 17518001 - CACTA-P 1150 0.0012 (3/2507) 0 * * Os_TE_163857 Chr7 17510778 17510547 - STOWAWAY43_OS 233 0.5803 (1734/2988) 1 Intact * Os_TE_163847 Chr7 17501442 17501443 + ORSiTERTOOT00296 5553 0.0010 (3/2983) 0 * Os_TE_163846 Os_TE_163846 Chr7 17501438 17501437 - SC-3_LTR 5748 0.0010 (3/2958) 0 * Os_TE_163847 Os_TE_163843 Chr7 17499537 17499538 + MuDR2_OS 6770 0.1893 (536/2831) 0 * Os_TE_163842 Os_TE_163842 Chr7 17499528 17499527 - MuDR2_OS 6770 0.1233 (326/2645) 0 * Os_TE_163843 Os_TE_163841 Chr7 17499457 17499458 + MERMITE18E 1528 0.4335 (1187/2738) 0 * Os_TE_163840 Os_TE_163840 Chr7 17499451 17499450 + MERMITEA 1710 0.4593 (1316/2865) 0 * Os_TE_163841 Os_TE_163835 Chr7 17496329 17496328 + DITAILA 257 0.4485 (1301/2901) 0 * * Os_TE_163829 Chr7 17494538 17494401 + ORSgTEMT00500201 140 0.5757 (1722/2991) 1 Intact Os_TE_163826 Os_TE_163826 Chr7 17494395 17494535 + ORSgTEMT00502327 143 0.5754 (1724/2996) 1 Intact Os_TE_163829 Os_TE_163825 Chr7 17493947 17493946 - ORSgTEMT00500675 140 0.4377 (1297/2963) 0 * * Os_TE_163821 Chr7 17493405 17493406 - AMYLTP 383 0.3319 (987/2974) 0 * Os_TE_163820 Os_TE_163820 Chr7 17493397 17493396 + AMYLTP 383 0.3247 (958/2950) 0 * Os_TE_163821 Os_TE_163765 Chr7 17468536 17468535 - COPIA2-LTR_OS 6433 0.0003 (1/2904) 0 * * Os_TE_163762 Chr7 17468196 17468195 - ORSgTEMT01600639 228 0.0018 (5/2853) 0 * Os_TE_163761 Os_TE_163761 Chr7 17468193 17468194 - ORSgTEMT01601208 238 0.0014 (4/2779) 0 * Os_TE_163762 Os_TE_163733 Chr7 17459665 17459666 - RETRO1_LTR 8314 0.0022 (6/2754) 0 * Os_TE_163732 Os_TE_163732 Chr7 17459661 17459660 + RETRO1_LTR 8314 0.0022 (6/2787) 0 * Os_TE_163733 Os_TE_163725 Chr7 17459055 17459056 + DS-RICE2N 613 0.0003 (1/2860) 0 * * Os_TE_163721 Chr7 17458393 17458392 + STOWAWAY47_OS 148 0.6525 (1915/2935) 0 * * Os_TE_163681 Chr7 17444681 17444680 - ORSiTERT00200154 9386 0.0158 (47/2972) 0 * * Os_TE_163672 Chr7 17439229 17439230 - RIRE2_LTR 11306 0.0003 (1/2926) 0 * Os_TE_163671 Os_TE_163671 Chr7 17439225 17439224 + RIRE2_LTR 11306 0.0003 (1/2924) 0 * Os_TE_163672 Os_TE_163655 Chr7 17428387 17428388 + ORSiTERTOOT00226 792 0.0003 (1/2990) 0 * Os_TE_163654 Os_TE_163654 Chr7 17428383 17428382 - SZ-22_LTR 4403 0.0003 (1/2992) 0 * Os_TE_163655 Os_TE_163645 Chr7 17421763 17421764 - SC-8_LTR 4951 0.0003 (1/2987) 0 * Os_TE_163644 Os_TE_163644 Chr7 17421759 17421758 + SC-8_LTR 4951 0.0003 (1/2990) 0 * Os_TE_163645 Os_TE_163610 Chr7 17400046 17400047 - COPIA2-LTR_OS 6433 0.0003 (1/2894) 0 * * Os_TE_163572 Chr7 17391654 17391655 + ORSiTERTOOT00112 4608 0.0017 (5/2988) 0 * * Os_TE_163570 Chr7 17391021 17391020 + COPIA2-LTR_OS 6433 0.0004 (1/2745) 0 * * Os_TE_163559 Chr7 17385978 17385979 + ORSgTEMT01701145 147 0.0004 (1/2812) 0 * * Os_TE_163556 Chr7 17385472 17380535 + ENSPM5_OS 9581 0.3332 (900/2701) 1 Intact Os_TE_163554 Os_TE_163554 Chr7 17380535 17385472 - ENSPM6_OS 9815 0.3633 (1054/2901) 1 Intact Os_TE_163556 Os_TE_163544 Chr7 17376702 17376701 + ORSgTETNOOT01834 251 0.0013 (4/2979) 0 * * Os_TE_163539 Chr7 17374861 17374862 + MPING 430 0.0067 (20/2990) 0 * Os_TE_163538 Os_TE_163538 Chr7 17374859 17374858 - MPING 430 0.0067 (20/2977) 0 * Os_TE_163539 Os_TE_163525 Chr7 17373049 17373050 + CRMA1_LTR 7543 0.0018 (5/2851) 0 * * Os_TE_163512 Chr7 17371096 17371097 + MPING 430 0.0003 (1/2969) 0 * Os_TE_163511 Os_TE_163511 Chr7 17371094 17371093 - MPING 430 0.0003 (1/2962) 0 * Os_TE_163512 Os_TE_163496 Chr7 17365026 17365027 + NDNA2TNA_OS 346 0.0017 (5/2984) 0 * * Os_TE_163495 Chr7 17364553 17364554 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_163494 Os_TE_163494 Chr7 17364549 17364548 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_163495 Os_TE_163487 Chr7 17359621 17358235 + CACTA-D 1038 0.3604 (1052/2919) 1 Intact Os_TE_163486 Os_TE_163486 Chr7 17358236 17359618 - CACTA-I 1124 0.3791 (1130/2981) 1 Intact Os_TE_163487 Os_TE_163478 Chr7 17357393 17357394 + COPIA2-LTR_OS 6433 0.0003 (1/2977) 0 * Os_TE_163477 Os_TE_163477 Chr7 17357389 17357388 - COPIA2-LTR_OS 6433 0.0007 (2/2977) 0 * Os_TE_163478 Os_TE_163475 Chr7 17356853 17356854 - ORSgTEMT01602413 239 0.0017 (5/2981) 0 * * Os_TE_163473 Chr7 17355852 17355853 + AMYLTP 383 0.0004 (1/2470) 0 * Os_TE_163472 Os_TE_163472 Chr7 17355844 17355843 - AMYLTP 383 0.0008 (2/2589) 0 * Os_TE_163473 Os_TE_163430 Chr7 17337671 17337672 + ORSiCMCM00100019 2717 0.6104 (1733/2839) 0 * Os_TE_163429 Os_TE_163429 Chr7 17337669 17337668 - TRUNCATOR2_LTR 2904 0.6251 (1834/2934) 0 * Os_TE_163430 Os_TE_163428 Chr7 17337288 17337289 + RIRE2_LTR 11306 0.2225 (616/2768) 0 * * Os_TE_163417 Chr7 17329687 17329688 - ORSgTETN00200001 10994 0.5978 (1730/2894) 0 * Os_TE_163416 Os_TE_163416 Chr7 17329685 17329684 + SPMLIKE 10989 0.6085 (1803/2963) 0 * Os_TE_163417 Os_TE_163414 Chr7 17329103 17329104 - CACTA-I 1124 0.0003 (1/2984) 0 * * Os_TE_163382 Chr7 17314475 17314476 - SZ-62LTR 3649 0.0027 (8/2990) 0 * Os_TE_163381 Os_TE_163381 Chr7 17314471 17314470 + SZ-62LTR 3649 0.0027 (8/2986) 0 * Os_TE_163382 Os_TE_163375 Chr7 17313922 17314156 + ORSgTEMT00900079 241 0.3817 (1139/2984) 1 Intact * Os_TE_163371 Chr7 17312998 17312997 + TRUNCATOR 2918 0.0019 (5/2621) 0 * * Os_TE_163360 Chr7 17311400 17310955 + ORSgTEMT00600272 361 0.3884 (1136/2925) 1 Intact Os_TE_163356 Os_TE_163356 Chr7 17310952 17311400 - CASLET 354 0.3742 (1103/2948) 1 Intact Os_TE_163360 Os_TE_163349 Chr7 17310212 17310211 - LINE-6_OS 4886 0.6279 (1875/2986) 0 * * Os_TE_163348 Chr7 17310192 17310191 + TRUNCATOR 2918 0.0018 (5/2748) 0 * * Os_TE_163328 Chr7 17299395 17299396 - ORSgTEMT01601432 239 0.0017 (5/2987) 0 * * Os_TE_163324 Chr7 17298893 17298892 - ORSgTEMT01602467 227 0.6245 (1848/2959) 0 * Os_TE_163323 Os_TE_163323 Chr7 17298890 17298891 + ORSgTEMT01602188 240 0.0225 (27/1198) 0 * Os_TE_163324 Os_TE_163322 Chr7 17298197 17298198 - COPI2_LTR 4733 0.5293 (1355/2560) 0 * Os_TE_163321 Os_TE_163321 Chr7 17298193 17298192 + COPI2_LTR 4733 0.5995 (1775/2961) 0 * Os_TE_163322 Os_TE_163317 Chr7 17297787 17298168 + AMYLTP 383 0.3782 (1127/2980) 1 Intact * Os_TE_163304 Chr7 17291808 17291809 - SEVERIN-2 1952 0.0043 (5/1154) 0 * * Os_TE_163292 Chr7 17287626 17287627 - OSTONOR1_LTR 6440 0.0091 (27/2953) 0 * * Os_TE_163284 Chr7 17285074 17285075 - SZ-19LTR 1513 0.0024 (5/2051) 0 * Os_TE_163283 Os_TE_163283 Chr7 17285070 17285069 + SZ-19LTR 1513 0.0015 (3/1955) 0 * Os_TE_163284 Os_TE_163242 Chr7 17268653 17268652 + ORSgTEMT00500260 149 0.0017 (5/2882) 0 * Os_TE_163241 Os_TE_163241 Chr7 17268649 17268650 + ORSgTEMT00500526 152 0.0017 (5/2892) 0 * Os_TE_163242 Os_TE_163213 Chr7 17255105 17255104 - STOWAWAY51_OS 246 0.0003 (1/2994) 0 * Os_TE_163212 Os_TE_163212 Chr7 17255102 17255103 + ORSgTEMT01601591 242 0.0003 (1/2995) 0 * Os_TE_163213 Os_TE_163205 Chr7 17251574 17251575 + TRUNCATOR 2918 0.0010 (3/2970) 0 * * Os_TE_163179 Chr7 17241112 17241113 - SC-3_LTR 5748 0.0003 (1/2974) 0 * Os_TE_163178 Os_TE_163178 Chr7 17241108 17241107 + ORSiTERTOOT00296 5553 0.0003 (1/2976) 0 * Os_TE_163179 Os_TE_163172 Chr7 17236900 17236899 + ORSgTEMT01900027 302 0.0017 (5/2977) 0 * Os_TE_163171 Os_TE_163171 Chr7 17236899 17236900 - TYPEH 309 0.0017 (5/2961) 0 * Os_TE_163172 Os_TE_163164 Chr7 17227072 17227071 - TRUNCATOR 2918 0.0087 (26/2988) 0 * * Os_TE_163139 Chr7 17220554 17220555 - ORSgTEMT00400006 152 0.0003 (1/2945) 0 * * Os_TE_163132 Chr7 17219998 17219141 - MUDRN1_OS 764 0.3706 (1071/2890) 1 Intact Os_TE_163131 Os_TE_163131 Chr7 17219136 17219998 + MUDRN2_OS 756 0.3934 (1068/2715) 1 Intact Os_TE_163132 Os_TE_163092 Chr7 17210588 17210587 + COPIA2-LTR_OS 6433 0.0003 (1/2978) 0 * * Os_TE_163078 Chr7 17208579 17208580 - ORSiTETNOOT00147 3619 0.0004 (1/2815) 0 * * Os_TE_163069 Chr7 17204719 17204720 - SC-3_LTR 5748 0.0003 (1/2990) 0 * * Os_TE_163068 Chr7 17204246 17204247 - SC-3_LTR 5748 0.0003 (1/2968) 0 * Os_TE_163067 Os_TE_163067 Chr7 17204242 17204241 + ORSiTERTOOT00296 5553 0.0003 (1/2971) 0 * Os_TE_163068 Os_TE_163064 Chr7 17199156 17199155 + COPIA2-LTR_OS 6433 0.0118 (35/2971) 0 * * Os_TE_163063 Chr7 17198815 17198816 + MERMITEA 1710 0.0007 (2/2950) 0 * * Os_TE_163056 Chr7 17195660 17195661 + SPMLIKE 10989 0.0013 (4/2976) 0 * Os_TE_163055 Os_TE_163055 Chr7 17195658 17195657 - ORSgTETN00200001 10994 0.0013 (4/2989) 0 * Os_TE_163056 Os_TE_163053 Chr7 17192885 17192886 - RETRO1_LTR 8314 0.0197 (59/2990) 0 * Os_TE_163052 Os_TE_163052 Chr7 17192881 17192880 + RETRO1_LTR 8314 0.0201 (60/2988) 0 * Os_TE_163053 Os_TE_163050 Chr7 17192517 17192516 + RETRO2_LTR 12874 0.0013 (4/2983) 0 * * Os_TE_163027 Chr7 17184286 17184285 + RETRO2_LTR 12874 0.0094 (28/2968) 0 * * Os_TE_162985 Chr7 17176452 17176223 - ORSgTEMT01601178 230 0.8849 (1892/2138) -1 Intact * Os_TE_162967 Chr7 17171670 17171671 + ORSiTERTOOT00034 791 0.0037 (11/2978) 0 * Os_TE_162966 Os_TE_162966 Chr7 17171666 17171665 - SZ-22_LTR 4403 0.0037 (11/2980) 0 * Os_TE_162967 Os_TE_162953 Chr7 17166762 17166761 - MPING 430 0.0013 (4/2977) 0 * * Os_TE_162952 Chr7 17166462 17166463 + MPING 430 0.0014 (4/2942) 0 * * Os_TE_162951 Chr7 17165906 17165907 - MPING 430 0.0030 (9/2992) 0 * Os_TE_162950 Os_TE_162950 Chr7 17165898 17165897 + MPING 430 0.0027 (8/2995) 0 * Os_TE_162951 Os_TE_162948 Chr7 17163511 17163512 - STOWAWAY51_OS 246 0.0024 (7/2943) 0 * * Os_TE_162947 Chr7 17162071 17162072 + MPING 430 0.0003 (1/2955) 0 * Os_TE_162946 Os_TE_162946 Chr7 17162069 17162068 - MPING 430 0.0003 (1/2987) 0 * Os_TE_162947 Os_TE_162943 Chr7 17161152 17161151 + CACTA-G1 797 0.0024 (7/2947) 0 * * Os_TE_162929 Chr7 17155219 17155218 + ORSgTEMT00600272 361 0.1066 (316/2963) 0 * * Os_TE_162925 Chr7 17153896 17153897 + ORSgTEMT01601445 230 0.0013 (4/2977) 0 * * Os_TE_162921 Chr7 17152579 17152578 - RETRO1_LTR 8314 0.0027 (8/2986) 0 * * Os_TE_162914 Chr7 17149130 17149131 + TRUNCATOR2_LTR 2904 0.0017 (5/2973) 0 * Os_TE_162913 Os_TE_162913 Chr7 17149126 17149125 - TRUNCATOR2_LTR 2904 0.0017 (5/2988) 0 * Os_TE_162914 Os_TE_162903 Chr7 17146012 17146011 - RETRO2_LTR 12874 0.0027 (8/2932) 0 * * Os_TE_162895 Chr7 17143820 17137301 + RIRE5-LTR_OS 6427 0.2610 (657/2517) 1 Intact Os_TE_162887 Os_TE_162887 Chr7 17137301 17143818 - RIRE5-LTR_OS 6427 0.3869 (1158/2993) 1 Intact Os_TE_162895 Os_TE_162877 Chr7 17133001 17133002 + RIREX_LTR 8828 0.0031 (9/2930) 0 * Os_TE_162876 Os_TE_162876 Chr7 17132997 17132996 - RIREX_LTR 8828 0.0031 (9/2924) 0 * Os_TE_162877 Os_TE_162851 Chr7 17121132 17121133 + RIRE3_LTR 12054 0.0067 (20/2981) 0 * Os_TE_162850 Os_TE_162850 Chr7 17121128 17121127 - RIRE3_LTR 12054 0.0080 (24/2984) 0 * Os_TE_162851 Os_TE_162839 Chr7 17117974 17117975 - SC-8_LTR 4951 0.0003 (1/2986) 0 * Os_TE_162838 Os_TE_162838 Chr7 17117970 17117969 + SC-8_LTR 4951 0.0003 (1/2988) 0 * Os_TE_162839 Os_TE_162832 Chr7 17114918 17114919 + ORSgTEMT00600272 361 0.0003 (1/2981) 0 * * Os_TE_162824 Chr7 17113232 17113233 + NDNA1TNA_OS 334 0.0069 (16/2328) 0 * Os_TE_162823 Os_TE_162823 Chr7 17113229 17113228 - NDNA1TNA_OS 334 0.0054 (16/2978) 0 * Os_TE_162824 Os_TE_162781 Chr7 17092285 17092286 - RIRE2_LTR 11306 0.6039 (1773/2936) 0 * Os_TE_162780 Os_TE_162780 Chr7 17092281 17092280 - ORSgTERT00201216 11284 0.6148 (1834/2983) 0 * Os_TE_162781 Os_TE_162774 Chr7 17091422 17091423 + ORSgTETNOOT00908 242 0.0003 (1/2989) 0 * Os_TE_162773 Os_TE_162773 Chr7 17091420 17091419 - ORSgTETNOOT00908 242 0.0003 (1/2987) 0 * Os_TE_162774 Os_TE_162772 Chr7 17089063 17089064 + STOLAB 312 0.0010 (3/2967) 0 * * Os_TE_162771 Chr7 17088860 17088859 + ORSgTETNOOT00032 218 0.0024 (7/2938) 0 * * Os_TE_162753 Chr7 17076336 17076335 - RIREX_LTR 8828 0.0003 (1/2902) 0 * * Os_TE_162749 Chr7 17073156 17076083 - TRUNCATOR2_LTR 2904 0.3140 (931/2965) 1 Intact * Os_TE_162709 Chr7 17053364 17053365 - TRUNCATOR2_LTR 2904 0.0003 (1/2980) 0 * Os_TE_162708 Os_TE_162708 Chr7 17053360 17053359 + TRUNCATOR2_LTR 2904 0.0003 (1/2984) 0 * Os_TE_162709 Os_TE_162696 Chr7 17046956 17046957 - RIRE3_LTR 12054 0.0031 (9/2935) 0 * * Os_TE_162652 Chr7 17028609 17028608 - ORSgTEMT01601493 303 0.0020 (2/1024) 0 * * Os_TE_162651 Chr7 17028276 17028275 + ORSgTEMT00501125 135 0.0029 (3/1040) 0 * * Os_TE_162632 Chr7 17010424 17027895 + ENSPM3_OS 10837 0.8977 (1035/1153) 1 Intact * Os_TE_162591 Chr7 16989389 16989390 + RIRE3_LTR 12054 0.0007 (2/2991) 0 * * Os_TE_162574 Chr7 16982522 16982523 - ORSiTERTOOT00078 768 0.0003 (1/2983) 0 * * Os_TE_162567 Chr7 16977631 16977632 + SC-8_LTR 4951 0.0003 (1/2989) 0 * Os_TE_162566 Os_TE_162566 Chr7 16977627 16977626 - SC-8_LTR 4951 0.0003 (1/2990) 0 * Os_TE_162567 Os_TE_162559 Chr7 16971301 16971300 - TESS 244 0.0004 (1/2811) 0 * * Os_TE_162522 Chr7 16947505 16947506 + ORSgTEMT01701224 156 0.0090 (27/2995) 0 * * Os_TE_162517 Chr7 16941410 16941411 - ORSgTETNOOT00908 242 0.0124 (37/2985) 0 * Os_TE_162516 Os_TE_162516 Chr7 16941408 16941407 + ORSgTETNOOT00908 242 0.0130 (39/2990) 0 * Os_TE_162517 Os_TE_162496 Chr7 16929694 16929693 + ORSgTEMT01601445 230 0.0114 (34/2982) 0 * Os_TE_162495 Os_TE_162495 Chr7 16929691 16929692 - ORSgTEMT01602493 235 0.0081 (24/2969) 0 * Os_TE_162496 Os_TE_162485 Chr7 16927453 16927452 - ORSgTEMT00700002 381 0.0003 (1/2907) 0 * * Os_TE_162467 Chr7 16920742 16920743 + SPMLIKE 10989 0.0003 (1/2987) 0 * Os_TE_162466 Os_TE_162466 Chr7 16920740 16920739 - ORSgTETN00200001 10994 0.0003 (1/2984) 0 * Os_TE_162467 Os_TE_162465 Chr7 16919804 16919805 - RETRO2_LTR 12874 0.0060 (18/2993) 0 * Os_TE_162464 Os_TE_162464 Chr7 16919800 16919799 + ORSgTERTOOT00009 12852 0.0060 (18/2988) 0 * Os_TE_162465 Os_TE_162455 Chr7 16914427 16914428 - AMYLTP 383 0.0003 (1/2997) 0 * Os_TE_162454 Os_TE_162454 Chr7 16914419 16914418 + AMYLTP 383 0.0003 (1/2998) 0 * Os_TE_162455 Os_TE_162447 Chr7 16912535 16912536 - ORSgTEMT00900498 242 0.0017 (5/2976) 0 * * Os_TE_162445 Chr7 16912133 16912132 - ORSgTETN00200001 10994 0.0018 (5/2835) 0 * * Os_TE_162438 Chr7 16910129 16910130 + TRUNCATOR2_LTR 2904 0.0088 (26/2950) 0 * Os_TE_162437 Os_TE_162437 Chr7 16910125 16910124 - TRUNCATOR2_LTR 2904 0.0105 (31/2965) 0 * Os_TE_162438 Os_TE_162427 Chr7 16904695 16904696 - ORSgTETN00200001 10994 0.0014 (4/2887) 0 * * Os_TE_162420 Chr7 16901260 16901259 + NDNA1TNA_OS 334 0.0104 (31/2974) 0 * * Os_TE_162416 Chr7 16896671 16896672 - ORSiTERTOOT00333 4719 0.0003 (1/2977) 0 * * Os_TE_162411 Chr7 16891488 16891489 + ORSiTERTOOT00226 792 0.0003 (1/2991) 0 * Os_TE_162410 Os_TE_162410 Chr7 16891484 16891483 - CRM-LTR_OS 7749 0.0003 (1/2987) 0 * Os_TE_162411 Os_TE_162409 Chr7 16891284 16891285 - ATLANTYS-LTR_OS 13740 0.0017 (5/2987) 0 * * Os_TE_162393 Chr7 16884722 16884723 - ORSiTERTOOT00332 5395 0.0490 (145/2962) 0 * Os_TE_162392 Os_TE_162392 Chr7 16884718 16884717 + ORSiTERTOOT00332 5395 0.0486 (144/2964) 0 * Os_TE_162393 Os_TE_162390 Chr7 16884564 16884563 + SZ-48LTR 3632 0.0003 (1/2988) 0 * * Os_TE_162381 Chr7 16883543 16883544 + TRUNCATOR 2918 0.0072 (21/2937) 0 * * Os_TE_162339 Chr7 16859004 16859005 + ORSiTERTOOT00296 5553 0.0003 (1/2998) 0 * Os_TE_162338 Os_TE_162338 Chr7 16859000 16858999 - SC-3_LTR 5748 0.0003 (1/2999) 0 * Os_TE_162339 Os_TE_162335 Chr7 16856950 16856951 + ORSgTETNOOT00908 242 0.3169 (925/2919) 0 * * Os_TE_162333 Chr7 16856689 16856690 + ORSgTEMT01601122 212 0.0062 (18/2911) 0 * * Os_TE_162332 Chr7 16856438 16856439 - SZ-22_LTR 4403 0.0007 (2/2904) 0 * * Os_TE_162304 Chr7 16851323 16851324 - SZ-9LTR 965 0.0003 (1/2986) 0 * Os_TE_162303 Os_TE_162303 Chr7 16851319 16851318 + SZ-9LTR 965 0.0003 (1/2988) 0 * Os_TE_162304 Os_TE_162287 Chr7 16839431 16839432 + ORSgTEMT01601591 242 0.0064 (19/2953) 0 * * Os_TE_162223 Chr7 16816937 16816938 - TYPEM 227 0.0184 (47/2560) 0 * * Os_TE_162221 Chr7 16816842 16816843 - MuDR3_OS 8604 0.0015 (4/2584) 0 * Os_TE_162220 Os_TE_162220 Chr7 16816834 16816833 + MuDR3_OS 8604 0.0011 (3/2609) 0 * Os_TE_162221 Os_TE_162169 Chr7 16801996 16801995 + NDNA1TNA_OS 334 0.0017 (5/2996) 0 * * Os_TE_162156 Chr7 16797601 16797600 + RIRE3_LTR 12054 0.0003 (1/2995) 0 * * Os_TE_162098 Chr7 16774955 16774956 - ORSgTEMT02400246 177 0.3129 (859/2745) 0 * * Os_TE_162093 Chr7 16774672 16774671 + COPIA2-LTR_OS 6433 0.0004 (1/2593) 0 * * Os_TE_162082 Chr7 16766335 16766336 - ORSiTETNOOT00134 607 0.0005 (1/2193) 0 * * Os_TE_162081 Chr7 16766138 16763584 + MERMITEB 1610 0.7208 (1825/2532) 1 Intact Os_TE_162077 Os_TE_162077 Chr7 16763582 16766136 + MERMITEB 1610 0.7626 (2262/2966) 1 Intact Os_TE_162081 Os_TE_162072 Chr7 16763448 16763230 + ORSgTEMT01602119 229 0.7624 (2265/2971) 1 Intact Os_TE_162070 Os_TE_162070 Chr7 16763211 16763435 + ORSgTEMT01601106 231 0.7618 (2239/2939) 1 Intact Os_TE_162072 Os_TE_162067 Chr7 16762662 16762661 - MERMITED 1572 0.2499 (738/2953) 0 * * Os_TE_162064 Chr7 16762465 16762464 + RIREX_LTR 8828 0.0014 (4/2962) 0 * * Os_TE_162062 Chr7 16761547 16750515 + SPMLIKE 10989 0.4465 (1315/2945) 1 Intact Os_TE_162051 Os_TE_162051 Chr7 16750515 16761548 - ORSgTETN00200001 10994 0.5562 (1192/2143) 1 Intact Os_TE_162062 Os_TE_162050 Chr7 16750490 16750491 + INDITTO 263 0.2414 (671/2780) 0 * * Os_TE_162045 Chr7 16749942 16750417 - STOWAWAY49_OS 241 0.7618 (2267/2976) 1 Intact * Os_TE_162043 Chr7 16749409 16749408 - COPIA2-LTR_OS 6433 0.0004 (1/2300) 0 * * Os_TE_162041 Chr7 16748813 16748814 - ORSiTETNOOT00134 607 0.0003 (1/2938) 0 * Os_TE_162040 Os_TE_162040 Chr7 16748806 16748805 + TWIF 586 0.0003 (1/2955) 0 * Os_TE_162041 Os_TE_162035 Chr7 16747315 16747073 - STOWAWAY49_OS 241 0.7655 (2292/2994) 1 Intact * Os_TE_162000 Chr7 16729798 16729799 - ORSgTETN00200001 10994 0.0020 (3/1511) 0 * Os_TE_161999 Os_TE_161999 Chr7 16729796 16729795 + CACTA-M 1129 0.0020 (3/1510) 0 * Os_TE_162000 Os_TE_161997 Chr7 16728171 16726752 + OSTE33 1012 0.8679 (1307/1506) 1 Intact Os_TE_161994 Os_TE_161994 Chr7 16726752 16728171 - OSTE33 1012 0.8736 (1368/1566) 1 Intact Os_TE_161997 Os_TE_161991 Chr7 16726350 16726349 - NDNA1TNA_OS 334 0.0006 (1/1572) 0 * * Os_TE_161990 Chr7 16725797 16725796 + ORSgTEMT05000092 279 0.0019 (3/1572) 0 * * Os_TE_161987 Chr7 16723977 16723976 - SPMLIKE 10989 0.0016 (3/1900) 0 * * Os_TE_161985 Chr7 16723468 16723229 + ORSgTEMT01601934 207 0.7181 (1358/1891) 1 Intact Os_TE_161984 Os_TE_161984 Chr7 16723229 16723468 + ORSgTEMT01601934 207 0.7171 (1351/1884) 1 Intact Os_TE_161985 Os_TE_161962 Chr7 16718564 16718565 + SZ-42LTR 958 0.2110 (495/2346) 0 * * Os_TE_161961 Chr7 16718258 16716791 - SZ-19LTR 1513 0.7427 (1377/1854) 1 Intact Os_TE_161950 Os_TE_161950 Chr7 16711892 16718249 + ATLANTYS-LTR_OS 13740 0.7105 (1372/1931) 1 Intact Os_TE_161961 Os_TE_161936 Chr7 16703910 16703911 - TRUNCATOR 2918 0.2076 (365/1758) 0 * * Os_TE_161903 Chr7 16678065 16678066 + BAJIELTR 4500 0.1976 (327/1655) 0 * * Os_TE_161888 Chr7 16673250 16673251 - SEVERIN-2 1952 0.0024 (5/2044) 0 * * Os_TE_161879 Chr7 16671223 16671072 - ORSgTEMT00502194 153 0.4514 (1343/2975) 1 Intact Os_TE_161877 Os_TE_161877 Chr7 16671074 16671220 + ORSgTEMT00500560 148 0.4547 (1349/2967) 1 Intact Os_TE_161879 Os_TE_161874 Chr7 16668410 16668409 - TYPEM 227 0.3221 (957/2971) 0 * * Os_TE_161870 Chr7 16668256 16668255 + STOWAWAY15-2_OS 145 0.5150 (1441/2798) 0 * * Os_TE_161868 Chr7 16668233 16668234 - ORSgTETNOOT00544 147 0.0017 (5/2932) 0 * Os_TE_161867 Os_TE_161867 Chr7 16668231 16668230 + ORSgTETNOOT01930 140 0.0027 (5/1878) 0 * Os_TE_161868 Os_TE_161866 Chr7 16667870 16667869 + OLO24 345 0.3214 (962/2993) 0 * * Os_TE_161865 Chr7 16667302 16667303 - COWARD 200 0.0028 (4/1413) 0 * Os_TE_161864 Os_TE_161864 Chr7 16667300 16667299 - ORSgTETNOOT01534 208 0.3432 (722/2104) 0 * Os_TE_161865 Os_TE_161858 Chr7 16663380 16663379 + ORSiTERTOOT00296 5553 0.0003 (1/2972) 0 * * Os_TE_161848 Chr7 16654557 16654333 - ORSgTEMT01000003 232 0.4504 (1338/2971) 1 Intact * Os_TE_161846 Chr7 16652621 16652620 + ORSgTEMT00901138 254 0.5661 (1688/2982) 0 * Os_TE_161845 Os_TE_161845 Chr7 16652619 16652620 - ORSgTEMT00900965 216 0.5650 (1682/2977) 0 * Os_TE_161846 Os_TE_161827 Chr7 16640284 16640285 + ORSgTEMT02000065 196 0.5439 (1575/2896) 0 * * Os_TE_161826 Chr7 16639832 16639831 + ORSgTEMT00500234 146 0.0017 (5/2990) 0 * * Os_TE_161825 Chr7 16639620 16639619 + TESS 244 0.0017 (5/2977) 0 * * Os_TE_161811 Chr7 16634880 16634879 + ORSgTEMT01700715 134 0.0003 (1/2973) 0 * * Os_TE_161798 Chr7 16632146 16632145 - TRUNCATOR 2918 0.2494 (677/2714) 0 * * Os_TE_161788 Chr7 16627218 16627219 - STOWAWAY51_OS 246 0.0010 (3/2996) 0 * * Os_TE_161781 Chr7 16626493 16626494 + ORSiTERTOOT00226 792 0.0027 (8/2991) 0 * Os_TE_161780 Os_TE_161780 Chr7 16626489 16626488 - SZ-22_LTR 4403 0.0027 (8/2991) 0 * Os_TE_161781 Os_TE_161779 Chr7 16622647 16622648 + TELIA 141 0.0004 (1/2661) 0 * Os_TE_161778 Os_TE_161778 Chr7 16622639 16622638 - TELIA 141 0.0004 (1/2746) 0 * Os_TE_161779 Os_TE_161752 Chr7 16611380 16611381 - GYPSY-A_LTR 8951 0.0003 (1/2921) 0 * * Os_TE_161749 Chr7 16610998 16610999 - RETRO2_LTR 12874 0.0096 (28/2924) 0 * Os_TE_161748 Os_TE_161748 Chr7 16610994 16610993 + RETRO2_LTR 12874 0.0092 (27/2923) 0 * Os_TE_161749 Os_TE_161727 Chr7 16602562 16606190 - GYPSY-A_LTR 8951 0.5011 (1375/2744) 1 Solo_LTR * Os_TE_161708 Chr7 16596083 16596082 - RIRE3_LTR 12054 0.0150 (27/1800) 0 * * Os_TE_161701 Chr7 16595010 16594219 + ORSiTERTOOT00226 792 0.4589 (1362/2968) 1 Intact * Os_TE_161691 Chr7 16590594 16594844 - ORSiTERTOOT00249 4413 0.4579 (1359/2968) 1 Intact * Os_TE_161674 Chr7 16588485 16588486 + RIRE2_LTR 11306 0.0059 (16/2695) 0 * Os_TE_161673 Os_TE_161673 Chr7 16588481 16588480 - RIRE2_LTR 11306 0.0063 (17/2700) 0 * Os_TE_161674 Os_TE_161514 Chr7 16537744 16537745 - TRUNCATOR2_LTR 2904 0.0105 (27/2561) 0 * Os_TE_161513 Os_TE_161513 Chr7 16537740 16537739 + TRUNCATOR2_LTR 2904 0.0107 (27/2531) 0 * Os_TE_161514 Os_TE_161497 Chr7 16530043 16530044 + CACTA-I 1124 0.3552 (1054/2967) 0 * Os_TE_161496 Os_TE_161496 Chr7 16530038 16530037 + ORSgTETN00200005 1121 0.3597 (1069/2972) 0 * Os_TE_161497 Os_TE_161495 Chr7 16530037 16530038 + CACTA-H 1152 0.3582 (1066/2976) 0 * * Os_TE_161494 Chr7 16529528 16529529 - COPIA2-LTR_OS 6433 0.0007 (2/2988) 0 * Os_TE_161493 Os_TE_161493 Chr7 16529524 16529523 + COPIA2-LTR_OS 6433 0.0007 (2/2980) 0 * Os_TE_161494 Os_TE_161475 Chr7 16521612 16521613 - TNR2A 152 0.0054 (16/2981) 0 * * Os_TE_161473 Chr7 16519691 16519692 + TESS 244 0.3782 (1122/2967) 0 * Os_TE_161472 Os_TE_161472 Chr7 16519684 16519683 - TESS 244 0.3788 (1127/2975) 0 * Os_TE_161473 Os_TE_161468 Chr7 16519095 16519094 - RIRE2_LTR 11306 0.0054 (16/2975) 0 * * Os_TE_161417 Chr7 16506921 16506922 - RETROSAT4_LTR 13504 0.0003 (1/2991) 0 * * Os_TE_161401 Chr7 16502795 16502796 - RETROSAT4_LTR 13504 0.0436 (128/2938) 0 * Os_TE_161400 Os_TE_161400 Chr7 16502791 16502790 + RETROSAT4_LTR 13504 0.0460 (136/2957) 0 * Os_TE_161401 Os_TE_161393 Chr7 16500002 16500003 + ORSiTERTOOT00028 8600 0.0003 (1/2964) 0 * Os_TE_161392 Os_TE_161392 Chr7 16499998 16499997 - TRUNCATOR2_LTR 2904 0.0003 (1/2965) 0 * Os_TE_161393 Os_TE_161386 Chr7 16497655 16497654 - ORSgTETN00200001 10994 0.0072 (21/2921) 0 * * Os_TE_161382 Chr7 16496479 16496480 - ORSgTETN00200001 10994 0.0072 (19/2657) 0 * * Os_TE_161353 Chr7 16481169 16481168 - RIRE3_LTR 12054 0.1457 (430/2952) 0 * * Os_TE_161352 Chr7 16480846 16480845 + TRUNCATOR 2918 0.0458 (136/2968) 0 * * Os_TE_161349 Chr7 16479147 16479146 - TRUNCATOR 2918 0.1383 (405/2929) 0 * * Os_TE_161342 Chr7 16478263 16478264 - TRUNCATOR2_LTR 2904 0.1804 (531/2944) 0 * Os_TE_161341 Os_TE_161341 Chr7 16478259 16478258 + ORSiCMCM00100019 2717 0.1822 (536/2942) 0 * Os_TE_161342 Os_TE_161339 Chr7 16475116 16475117 - RIRE3_LTR 12054 0.0014 (4/2952) 0 * * Os_TE_161282 Chr7 16452825 16452826 - ORSgTERT00201216 11284 0.0458 (136/2969) 0 * Os_TE_161281 Os_TE_161281 Chr7 16452821 16452820 - RIRE2_LTR 11306 0.0464 (138/2972) 0 * Os_TE_161282 Os_TE_161231 Chr7 16436062 16436061 - SZ-58LTR 114 0.0017 (5/2899) 0 * * Os_TE_161224 Chr7 16433027 16433028 + EnSpm-13_OS 11171 0.0003 (1/2963) 0 * Os_TE_161223 Os_TE_161223 Chr7 16433025 16433024 - EnSpm-13_OS 11171 0.0003 (1/2963) 0 * Os_TE_161224 Os_TE_161222 Chr7 16431598 16431599 - AMYLTP 383 0.1289 (364/2823) 0 * Os_TE_161221 Os_TE_161221 Chr7 16431590 16431589 + AMYLTP 383 0.1431 (408/2852) 0 * Os_TE_161222 Os_TE_161202 Chr7 16412854 16412855 - COPIA2-LTR_OS 6433 0.0003 (1/2972) 0 * Os_TE_161201 Os_TE_161201 Chr7 16412850 16412849 + COPIA2-LTR_OS 6433 0.0003 (1/2974) 0 * Os_TE_161202 Os_TE_161199 Chr7 16412117 16412118 - ORSiTERT00200154 9386 0.0077 (23/2975) 0 * * Os_TE_161156 Chr7 16396567 16396566 + CACTA-D 1038 0.2050 (523/2551) 0 * * Os_TE_161154 Chr7 16395598 16395599 - INDITTO 263 0.0034 (10/2933) 0 * * Os_TE_161150 Chr7 16395315 16394195 - RIRE5-LTR_OS 6427 0.3513 (1023/2912) 1 Solo_LTR Os_TE_161149 Os_TE_161149 Chr7 16394195 16395318 + RIRE5-LTR_OS 6427 0.2783 (718/2580) -1 Solo_LTR Os_TE_161150 Os_TE_161132 Chr7 16389369 16389370 + ORSgTEMT00300064 397 0.0085 (23/2716) 0 * Os_TE_161131 Os_TE_161131 Chr7 16389363 16389362 + ORSgTEMT00300069 394 0.0067 (18/2704) 0 * Os_TE_161132 Os_TE_161102 Chr7 16376374 16376375 + ORSiTERTOOT00296 5553 0.0003 (1/2993) 0 * Os_TE_161101 Os_TE_161101 Chr7 16376370 16376369 - SC-3_LTR 5748 0.0003 (1/2994) 0 * Os_TE_161102 Os_TE_161087 Chr7 16371517 16371516 - ORSiTERT00200154 9386 0.0077 (23/2996) 0 * * Os_TE_161067 Chr7 16364687 16364688 + COPIA2-LTR_OS 6433 0.0060 (18/2998) 0 * Os_TE_161066 Os_TE_161066 Chr7 16364683 16364682 - COPIA2-LTR_OS 6433 0.0063 (19/2998) 0 * Os_TE_161067 Os_TE_161065 Chr7 16364529 16364528 + TRUNCATOR 2918 0.0097 (29/2997) 0 * Os_TE_161064 Os_TE_161064 Chr7 16364528 16364529 - TRUNCATOR 2918 0.0100 (30/2999) 0 * Os_TE_161065 Os_TE_160964 Chr7 16319486 16319485 - TYPEU1 380 0.0477 (142/2978) 0 * * Os_TE_160962 Chr7 16317582 16317581 - ENSPM4_OS 11610 0.3304 (979/2963) 0 * * Os_TE_160913 Chr7 16301986 16301985 - RETROSAT2LTR 12796 0.0107 (32/2993) 0 * * Os_TE_160908 Chr7 16299710 16299711 + ORSgTETNOOT00792 273 0.0104 (31/2987) 0 * Os_TE_160907 Os_TE_160907 Chr7 16299709 16299708 + ORSgTETNOOT01286 235 0.0097 (29/2979) 0 * Os_TE_160908 Os_TE_160906 Chr7 16299506 16299507 - STOWAWAY51_OS 246 0.0104 (31/2995) 0 * * Os_TE_160904 Chr7 16299454 16299453 + ORSgTEMT00900897 248 0.0104 (31/2993) 0 * Os_TE_160903 Os_TE_160903 Chr7 16299453 16299454 - DITTO 244 0.0107 (32/2993) 0 * Os_TE_160904 Os_TE_160902 Chr7 16299073 16299074 + DS-RICE4N 715 0.0104 (31/2991) 0 * * Os_TE_160896 Chr7 16298106 16298107 - RIRE5-LTR_OS 6427 0.0003 (1/2864) 0 * Os_TE_160895 Os_TE_160895 Chr7 16298100 16298099 + RIRE5-LTR_OS 6427 0.0003 (1/2870) 0 * Os_TE_160896 Os_TE_160893 Chr7 16297383 16297382 + TRUNCATOR 2918 0.0003 (1/2932) 0 * * Os_TE_160881 Chr7 16295605 16295604 + ORSgTEMT00300122 416 0.0104 (31/2983) 0 * * Os_TE_160858 Chr7 16285677 16285676 - ORSgTEMT00500110 151 0.0104 (31/2992) 0 * Os_TE_160857 Os_TE_160857 Chr7 16285676 16285677 - ORSgTEMT00502544 146 0.0107 (32/2989) 0 * Os_TE_160858 Os_TE_160852 Chr7 16285127 16285128 - ORSgTEMT01400019 216 0.0115 (34/2945) 0 * * Os_TE_160831 Chr7 16271588 16271589 + MDR2 6967 0.0021 (6/2819) 0 * * Os_TE_160807 Chr7 16260480 16260481 - SEVERIN-2 1952 0.1393 (416/2987) 0 * * Os_TE_160759 Chr7 16250483 16250482 + ORSiCMCM00100019 2717 0.0085 (25/2950) 0 * * Os_TE_160753 Chr7 16249829 16249828 - TNR2A 152 0.0003 (1/2942) 0 * * Os_TE_160750 Chr7 16248319 16234083 - ORSgTERT00201216 11284 0.5490 (1640/2987) 1 Intact * Os_TE_160724 Chr7 16232406 16232407 + TRUNCATOR 2918 0.0593 (176/2966) 0 * Os_TE_160723 Os_TE_160723 Chr7 16232400 16232399 - ORSiTERT00200154 9386 0.0486 (144/2960) 0 * Os_TE_160724 Os_TE_160722 Chr7 16232266 16232267 + RIREX_LTR 8828 0.0003 (1/2943) 0 * * Os_TE_160695 Chr7 16227823 16227822 - STOWAWAY45_OS 266 0.0003 (1/2973) 0 * Os_TE_160694 Os_TE_160694 Chr7 16227820 16227821 + STOWAWAY45_OS 266 0.0003 (1/2981) 0 * Os_TE_160695 Os_TE_160686 Chr7 16225743 16225742 + SZLTR 1249 0.0091 (25/2753) 0 * * Os_TE_160684 Chr7 16224980 16224979 - AMYLTP 383 0.1537 (434/2824) 0 * Os_TE_160682 Os_TE_160682 Chr7 16224971 16224972 + AMYLTP 383 0.1688 (475/2814) 0 * Os_TE_160684 Os_TE_160666 Chr7 16213389 16213390 + ORSgTEMT00500498 155 0.0013 (4/2996) 0 * * Os_TE_160663 Chr7 16212534 16212535 + COPIA1-LTR_OS 9292 0.0017 (5/2992) 0 * * Os_TE_160653 Chr7 16203026 16203027 + ORSiTERTOOT00296 5553 0.0003 (1/2984) 0 * Os_TE_160652 Os_TE_160652 Chr7 16203022 16203021 - SC-3_LTR 5748 0.0003 (1/2986) 0 * Os_TE_160653 Os_TE_160535 Chr7 16150559 16150560 - ORSgTERT00201216 11284 0.0055 (16/2931) 0 * * Os_TE_160533 Chr7 16149084 16149085 - COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_160532 Os_TE_160532 Chr7 16149080 16149079 + COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_160533 Os_TE_160531 Chr7 16148770 16148771 - SZ-25LTR 330 0.0017 (5/2968) 0 * Os_TE_160530 Os_TE_160530 Chr7 16148766 16148765 + COPI1_LTR 4721 0.0017 (5/2975) 0 * Os_TE_160531 Os_TE_160529 Chr7 16148434 16145701 + HARB-N1_OS 2589 0.3481 (1023/2939) 1 Intact Os_TE_160525 Os_TE_160525 Chr7 16145701 16148434 - HARB-N1_OS 2589 0.3211 (910/2834) -1 Intact Os_TE_160529 Os_TE_160523 Chr7 16144269 16144270 + TWIFBIG 3567 0.0530 (147/2772) 0 * Os_TE_160522 Os_TE_160522 Chr7 16144262 16144261 - ORSiTETNOOT00216 3569 0.0517 (143/2767) 0 * Os_TE_160523 Os_TE_160484 Chr7 16136424 16136423 - ORSgTEMT01601696 238 0.1512 (447/2956) 0 * Os_TE_160483 Os_TE_160483 Chr7 16136421 16136422 + ORSgTEMT01601934 207 0.1553 (461/2969) 0 * Os_TE_160484 Os_TE_160471 Chr7 16130767 16130768 - RIRE2_LTR 11306 0.0079 (23/2913) 0 * Os_TE_160470 Os_TE_160470 Chr7 16130763 16130762 + RIRE2_LTR 11306 0.0065 (19/2906) 0 * Os_TE_160471 Os_TE_160451 Chr7 16121586 16121585 + RIREX_LTR 8828 0.0024 (7/2969) 0 * * Os_TE_160422 Chr7 16114768 16114769 + SPMLIKE 10989 0.0024 (7/2976) 0 * Os_TE_160421 Os_TE_160421 Chr7 16114766 16114765 - ORSgTETN00200001 10994 0.0024 (7/2975) 0 * Os_TE_160422 Os_TE_160419 Chr7 16112848 16112847 + ORSgTEMT01602181 239 0.0067 (20/2996) 0 * Os_TE_160418 Os_TE_160418 Chr7 16112845 16112846 + ORSgTEMT01602609 233 0.0073 (22/2998) 0 * Os_TE_160419 Os_TE_160407 Chr7 16109626 16109627 - RIREX_LTR 8828 0.1880 (537/2856) 0 * * Os_TE_160402 Chr7 16108384 16108383 - COPI2_LTR 4733 0.0028 (8/2836) 0 * * Os_TE_160306 Chr7 16073513 16073514 - AMYLTP 383 0.0013 (4/2984) 0 * Os_TE_160305 Os_TE_160305 Chr7 16073505 16073504 + AMYLTP 383 0.0013 (4/2983) 0 * Os_TE_160306 Os_TE_160301 Chr7 16070663 16070664 - RIREX_LTR 8828 0.0047 (14/2996) 0 * * Os_TE_160298 Chr7 16067661 16067662 + DS-RICE3N 525 0.0013 (4/2975) 0 * * Os_TE_160279 Chr7 16061724 16061725 + ORSiCMCM00100019 2717 0.0495 (140/2826) 0 * Os_TE_160278 Os_TE_160278 Chr7 16061720 16061719 - TRUNCATOR2_LTR 2904 0.0493 (143/2903) 0 * Os_TE_160279 Os_TE_160276 Chr7 16061097 16061098 - ORSgTETNOOT00053 263 0.1616 (478/2958) 0 * Os_TE_160275 Os_TE_160275 Chr7 16061095 16061094 - INDITTO 263 0.1670 (496/2970) 0 * Os_TE_160276 Os_TE_160256 Chr7 16051228 16051229 + SPMLIKE 10989 0.0011 (2/1850) 0 * * Os_TE_160244 Chr7 16047148 16047149 - COPI2_LTR 4733 0.0003 (1/2967) 0 * Os_TE_160243 Os_TE_160243 Chr7 16047144 16047143 + COPI2_LTR 4733 0.0003 (1/2943) 0 * Os_TE_160244 Os_TE_160233 Chr7 16041102 16041953 + ORSiTETNOOT00107 906 0.8401 (2454/2921) 1 Intact * Os_TE_160220 Chr7 16034712 16034713 + TWIFBIG 3567 0.0003 (1/2897) 0 * Os_TE_160219 Os_TE_160219 Chr7 16034705 16034704 - ORSiTETNOOT00216 3569 0.0003 (1/2866) 0 * Os_TE_160220 Os_TE_160204 Chr7 16028917 16028918 - F770 284 0.0537 (158/2943) 0 * Os_TE_160203 Os_TE_160203 Chr7 16028915 16028914 + F770 284 0.0518 (152/2935) 0 * Os_TE_160204 Os_TE_160191 Chr7 16024333 16024334 - CACTA-M 1129 0.0013 (4/2990) 0 * Os_TE_160190 Os_TE_160190 Chr7 16024331 16024330 + CACTA-M 1129 0.0013 (4/2995) 0 * Os_TE_160191 Os_TE_160176 Chr7 16020432 16020433 + ORSiTERTOOT00296 5553 0.0003 (1/2995) 0 * Os_TE_160175 Os_TE_160175 Chr7 16020428 16020427 - SC-3_LTR 5748 0.0003 (1/2995) 0 * Os_TE_160176 Os_TE_160125 Chr7 15986242 15986243 + ORSiTERTOOT00074 4935 0.0005 (1/2013) 0 * * Os_TE_160123 Chr7 15985710 15985709 - MPING 430 0.0003 (1/2943) 0 * * Os_TE_160122 Chr7 15985252 15984585 + DS-RICE4N 715 0.7047 (2090/2966) 1 Intact Os_TE_160119 Os_TE_160119 Chr7 15984584 15985251 - DS-RICE4N 715 0.7080 (2080/2938) 1 Intact Os_TE_160122 Os_TE_160112 Chr7 15981928 15982198 - F569 228 0.8881 (1603/1805) 1 Intact * Os_TE_160110 Chr7 15981668 15981919 - STOWAWAY34_OS 256 0.6875 (2020/2938) 1 Intact * Os_TE_160107 Chr7 15981402 15981403 - RIRE2_LTR 11306 0.0127 (38/2988) 0 * Os_TE_160106 Os_TE_160106 Chr7 15981398 15981397 + RIRE2_LTR 11306 0.0124 (37/2987) 0 * Os_TE_160107 Os_TE_160105 Chr7 15981260 15981259 - SZ-5LTR 1223 0.3264 (977/2993) 0 * * Os_TE_160104 Chr7 15981216 15981215 + COPIA1-LTR_OS 9292 0.0007 (2/2969) 0 * * Os_TE_160071 Chr7 15969699 15969700 + AMYLTP 383 0.0021 (6/2830) 0 * Os_TE_160070 Os_TE_160070 Chr7 15969691 15969690 - AMYLTP 383 0.0021 (6/2830) 0 * Os_TE_160071 Os_TE_160051 Chr7 15967445 15967446 + ECSR 154 0.0004 (1/2788) 0 * * Os_TE_160014 Chr7 15953836 15953837 + RIREX_LTR 8828 0.0167 (50/2992) 0 * Os_TE_160013 Os_TE_160013 Chr7 15953832 15953831 - RIREX_LTR 8828 0.0171 (51/2990) 0 * Os_TE_160014 Os_TE_160012 Chr7 15953694 15953695 - NDNA2TNA_OS 346 0.1082 (323/2984) 0 * * Os_TE_159999 Chr7 15948222 15948223 + ORSgTEMT00700017 386 0.0007 (2/2969) 0 * * Os_TE_159996 Chr7 15946100 15946101 - COPI2_LTR 4733 0.0003 (1/2979) 0 * * Os_TE_159979 Chr7 15942387 15942386 + SEVERIN-2 1952 0.0037 (4/1076) 0 * * Os_TE_159970 Chr7 15937151 15937152 + OSTE33 1012 0.0009 (1/1078) 0 * Os_TE_159969 Os_TE_159969 Chr7 15937142 15937141 + OSTE33 1012 0.0009 (1/1077) 0 * Os_TE_159970 Os_TE_159966 Chr7 15936047 15936048 - ORSgTEMT00101341 314 0.0046 (5/1089) 0 * * Os_TE_159955 Chr7 15932248 15932249 - ORSgTEMT00100582 334 0.0013 (4/2972) 0 * * Os_TE_159954 Chr7 15928560 15928559 + TWIFB1 3737 0.0060 (18/2984) 0 * * Os_TE_159941 Chr7 15920192 15920193 + SC-8_LTR 4951 0.0021 (5/2429) 0 * Os_TE_159940 Os_TE_159940 Chr7 15920188 15920187 - SC-8_LTR 4951 0.0018 (5/2854) 0 * Os_TE_159941 Os_TE_159918 Chr7 15902938 15902939 + RETRO2A_LTR 12895 0.0054 (16/2988) 0 * Os_TE_159917 Os_TE_159917 Chr7 15902934 15902933 - RETRO2_LTR 12874 0.0054 (16/2989) 0 * Os_TE_159918 Os_TE_159913 Chr7 15895825 15895824 - TRUNCATOR 2918 0.0041 (12/2907) 0 * Os_TE_159912 Os_TE_159912 Chr7 15895824 15895825 + TRUNCATOR 2918 0.0058 (17/2925) 0 * Os_TE_159913 Os_TE_159894 Chr7 15890304 15890305 - RIREX_LTR 8828 0.0064 (19/2977) 0 * Os_TE_159893 Os_TE_159893 Chr7 15890300 15890299 + RIREX_LTR 8828 0.0064 (19/2983) 0 * Os_TE_159894 Os_TE_159881 Chr7 15876115 15876114 + MUDRN5_OS 374 0.0003 (1/2992) 0 * * Os_TE_159880 Chr7 15875098 15875099 + TWIF 586 0.0013 (4/2994) 0 * Os_TE_159879 Os_TE_159879 Chr7 15875091 15875090 - ORSiTETNOOT00134 607 0.0013 (4/2995) 0 * Os_TE_159880 Os_TE_159871 Chr7 15868811 15868812 + SPMLIKE 10989 0.2777 (825/2971) 0 * Os_TE_159870 Os_TE_159870 Chr7 15868809 15868808 - ORSgTETN00200001 10994 0.2789 (829/2972) 0 * Os_TE_159871 Os_TE_159867 Chr7 15868597 15868596 + ORSgTETNOOT00908 242 0.0003 (1/2970) 0 * * Os_TE_159865 Chr7 15868397 15868398 + ORSgTEMT00500201 140 0.0044 (13/2945) 0 * * Os_TE_159842 Chr7 15863837 15863836 + OSMAR1 5265 0.0027 (8/2960) 0 * Os_TE_159841 Os_TE_159841 Chr7 15863834 15863835 - OSMAR1 5265 0.0027 (8/2957) 0 * Os_TE_159842 Os_TE_159806 Chr7 15856310 15856311 - RETRO1_LTR 8314 0.0064 (19/2956) 0 * * Os_TE_159798 Chr7 15854611 15854610 + ORSgTEMT01602181 239 0.0434 (129/2969) 0 * * Os_TE_159777 Chr7 15847949 15847950 + CACTA-H 1152 0.2020 (578/2861) 0 * * Os_TE_159732 Chr7 15830983 15830982 + ORSgTEMT01602181 239 0.0004 (1/2684) 0 * * Os_TE_159628 Chr7 15799051 15799052 - RIRE3_LTR 12054 0.0501 (146/2912) 0 * * Os_TE_159610 Chr7 15791887 15791888 - RIREX_LTR 8828 0.0014 (4/2960) 0 * Os_TE_159609 Os_TE_159609 Chr7 15791883 15791882 + RIREX_LTR 8828 0.0014 (4/2959) 0 * Os_TE_159610 Os_TE_159594 Chr7 15788056 15788057 + ORSiTERTOOT00028 8600 0.0013 (4/2985) 0 * Os_TE_159593 Os_TE_159593 Chr7 15788052 15788051 - TRUNCATOR2_LTR 2904 0.0013 (4/2983) 0 * Os_TE_159594 Os_TE_159583 Chr7 15785582 15785583 + ORSiTERTOOT00296 5553 0.0073 (22/2995) 0 * Os_TE_159582 Os_TE_159582 Chr7 15785578 15785577 - SC-3_LTR 5748 0.0073 (22/2996) 0 * Os_TE_159583 Os_TE_159574 Chr7 15780477 15780476 - ORSgTEMT00501443 152 0.0003 (1/2975) 0 * * Os_TE_159569 Chr7 15776829 15776830 + ORSiTERTOOT00296 5553 0.0003 (1/2989) 0 * Os_TE_159568 Os_TE_159568 Chr7 15776825 15776824 - SC-3_LTR 5748 0.0003 (1/2990) 0 * Os_TE_159569 Os_TE_159554 Chr7 15768242 15768243 - ORSiTEMT01000008 242 0.0010 (1/1001) 0 * Os_TE_159553 Os_TE_159553 Chr7 15768240 15768239 + ORSiTEMT01000008 242 0.0010 (1/1010) 0 * Os_TE_159554 Os_TE_159539 Chr7 15759840 15759839 + CACTA-I 1124 0.0057 (17/2986) 0 * * Os_TE_159538 Chr7 15759752 15759753 + TRUNCATOR 2918 0.0797 (238/2985) 0 * * Os_TE_159526 Chr7 15750934 15750933 + ORSgTEMT00101674 340 0.0809 (224/2769) 0 * * Os_TE_159489 Chr7 15726018 15726019 + ORSgTEMT00800040 372 0.0349 (100/2869) 0 * Os_TE_159488 Os_TE_159488 Chr7 15726009 15726008 + AMYLTP 383 0.0333 (96/2883) 0 * Os_TE_159489 Os_TE_159487 Chr7 15725842 15725841 + ORSgTEMT00502025 149 0.0061 (18/2962) 0 * * Os_TE_159463 Chr7 15723320 15723319 - TNR2A 152 0.0023 (7/2992) 0 * * Os_TE_159462 Chr7 15723263 15723262 - COWARD 200 0.0054 (16/2990) 0 * * Os_TE_159458 Chr7 15717650 15717649 + ORSgTEMT00901844 250 0.0063 (19/2997) 0 * * Os_TE_159457 Chr7 15717207 15717208 + GYPSY-A_LTR 8951 0.0054 (16/2987) 0 * * Os_TE_159443 Chr7 15714321 15714322 + RIREX_LTR 8828 0.0013 (4/2984) 0 * Os_TE_159442 Os_TE_159442 Chr7 15714317 15714316 - RIREX_LTR 8828 0.0013 (4/2985) 0 * Os_TE_159443 Os_TE_159441 Chr7 15714094 15714095 + COPIA2-LTR_OS 6433 0.0003 (1/2981) 0 * Os_TE_159440 Os_TE_159440 Chr7 15714090 15714089 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_159441 Os_TE_159434 Chr7 15712518 15712519 + RIREX_LTR 8828 0.0214 (64/2990) 0 * Os_TE_159433 Os_TE_159433 Chr7 15712514 15712513 - RIREX_LTR 8828 0.0211 (63/2990) 0 * Os_TE_159434 Os_TE_159429 Chr7 15712206 15712205 + TRUNCATOR 2918 0.0024 (7/2956) 0 * * Os_TE_159412 Chr7 15705224 15705223 + ORSiTERTOOT00027 10853 0.0010 (3/2975) 0 * * Os_TE_159407 Chr7 15703183 15703184 + GYPSY-B_LTR 7068 0.0017 (5/2975) 0 * Os_TE_159406 Os_TE_159406 Chr7 15703179 15703178 - GYPSY-B_LTR 7068 0.0017 (5/2977) 0 * Os_TE_159407 Os_TE_159382 Chr7 15692451 15692450 - ORSiTERTOOT00117 733 0.0189 (55/2914) 0 * * Os_TE_159381 Chr7 15691848 15691849 - RIRE3_LTR 12054 0.5770 (1675/2903) 0 * * Os_TE_159379 Chr7 15691787 15691788 + RIREX_LTR 8828 0.0003 (1/2890) 0 * Os_TE_159378 Os_TE_159378 Chr7 15691783 15691782 - RIREX_LTR 8828 0.0003 (1/2887) 0 * Os_TE_159379 Os_TE_159377 Chr7 15691034 15691035 - RIRE3_LTR 12054 0.0505 (148/2930) 0 * Os_TE_159376 Os_TE_159376 Chr7 15691030 15691029 + RIRE3_LTR 12054 0.0163 (46/2819) 0 * Os_TE_159377 Os_TE_159346 Chr7 15681327 15681328 - TRUNCATOR 2918 0.4798 (1426/2972) 0 * * Os_TE_159337 Chr7 15679226 15679227 - ORSiTERTOOT00404 4839 0.0367 (107/2914) 0 * Os_TE_159336 Os_TE_159336 Chr7 15679222 15679221 + ORSiTERTOOT00404 4839 0.0369 (108/2925) 0 * Os_TE_159337 Os_TE_159331 Chr7 15678796 15678797 + DS-RICE4N 715 0.0023 (7/2990) 0 * * Os_TE_159315 Chr7 15670602 15670601 - OSLINE1-2 7128 0.0402 (120/2987) 0 * * Os_TE_159301 Chr7 15664614 15664615 - ORSiCMCM00100014 10855 0.0065 (19/2917) 0 * * Os_TE_159294 Chr7 15661834 15661835 + RIREX_LTR 8828 0.0064 (19/2984) 0 * * Os_TE_159292 Chr7 15660497 15660498 + ORSiTERTOOT00329 5144 0.0024 (7/2971) 0 * Os_TE_159291 Os_TE_159291 Chr7 15660491 15660490 - ORSiTERTOOT00329 5144 0.0024 (7/2973) 0 * Os_TE_159292 Os_TE_159289 Chr7 15659842 15659843 - RIRE2_LTR 11306 0.0064 (19/2967) 0 * * Os_TE_159286 Chr7 15658837 15658836 - ORMOSIA 482 0.0057 (17/2971) 0 * * Os_TE_159285 Chr7 15658673 15658674 + RIREX_LTR 8828 0.0003 (1/2972) 0 * Os_TE_159284 Os_TE_159284 Chr7 15658669 15658668 - RIREX_LTR 8828 0.0003 (1/2969) 0 * Os_TE_159285 Os_TE_159280 Chr7 15656742 15656741 + TRUNCATOR2_LTR 2904 0.0372 (103/2767) 0 * * Os_TE_159263 Chr7 15645317 15645318 - GYPSY-A_LTR 8951 0.0060 (18/2983) 0 * * Os_TE_159253 Chr7 15638250 15638249 + ORSgTEMT00901844 250 0.0017 (5/2984) 0 * Os_TE_159252 Os_TE_159252 Chr7 15638248 15638249 + ORSgTEMT00900648 236 0.0017 (5/2968) 0 * Os_TE_159253 Os_TE_159250 Chr7 15636936 15636937 - TNR2A 152 0.0040 (12/2990) 0 * Os_TE_159249 Os_TE_159249 Chr7 15636920 15636919 + TNR2A 152 0.0047 (14/2984) 0 * Os_TE_159250 Os_TE_159247 Chr7 15636528 15636527 - SC-3_LTR 5748 0.0003 (1/2969) 0 * * Os_TE_159218 Chr7 15622536 15622535 + MuDR2_OS 6770 0.0058 (16/2778) 0 * * Os_TE_159210 Chr7 15617104 15617105 + CLOUD-7 495 0.0013 (4/2987) 0 * Os_TE_159209 Os_TE_159209 Chr7 15617098 15617097 - CLOUD-7 495 0.0010 (3/2985) 0 * Os_TE_159210 Os_TE_159206 Chr7 15615419 15615420 - ORSgTEMT02400179 221 0.0003 (1/2987) 0 * * Os_TE_159203 Chr7 15614427 15614428 - ORSiTETNOOT00216 3569 0.0066 (19/2896) 0 * * Os_TE_159202 Chr7 15614369 15614370 + HELITRON2_OS 15167 0.0355 (99/2788) 0 * * Os_TE_159200 Chr7 15613493 15613492 + ORSgTEMT00100272 356 0.0078 (23/2955) 0 * Os_TE_159199 Os_TE_159199 Chr7 15613492 15613493 + NDNA1TNA_OS 334 0.0075 (22/2920) 0 * Os_TE_159200 Os_TE_159176 Chr7 15606597 15606596 - RIREX_LTR 8828 0.0064 (19/2988) 0 * * Os_TE_159169 Chr7 15604885 15604886 + MuDR4_OS 7610 0.5352 (1458/2724) 0 * Os_TE_159168 Os_TE_159168 Chr7 15604878 15604877 - MuDR4_OS 7610 0.5754 (1687/2932) 0 * Os_TE_159169 Os_TE_159150 Chr7 15600467 15600466 - ORSgTEMT00600192 355 0.0003 (1/2972) 0 * * Os_TE_159143 Chr7 15592237 15592236 - TRUNCATOR 2918 0.0020 (6/2953) 0 * Os_TE_159142 Os_TE_159142 Chr7 15592236 15592237 + TRUNCATOR 2918 0.0024 (7/2954) 0 * Os_TE_159143 Os_TE_159139 Chr7 15590862 15590861 + F770 284 0.0044 (13/2942) 0 * * Os_TE_159118 Chr7 15582476 15582475 - SEVERIN-2 1952 0.0003 (1/2982) 0 * * Os_TE_159111 Chr7 15580805 15580806 + RETRO2A_LTR 12895 0.0296 (41/1384) 0 * Os_TE_159110 Os_TE_159110 Chr7 15580801 15580800 - RETRO2_LTR 12874 0.0303 (42/1386) 0 * Os_TE_159111 Os_TE_159101 Chr7 15575918 15575917 - SZ-9LTR 965 0.2254 (666/2955) 0 * * Os_TE_159075 Chr7 15565763 15565764 + RIRE3_LTR 12054 0.7453 (2171/2913) 0 * Os_TE_159074 Os_TE_159074 Chr7 15565759 15565758 - RIRE3_LTR 12054 0.7577 (2248/2967) 0 * Os_TE_159075 Os_TE_159068 Chr7 15561835 15561836 - SINE6_OS 119 0.0322 (95/2947) 0 * Os_TE_159067 Os_TE_159067 Chr7 15561820 15561819 + SINE1OS 127 0.0317 (94/2962) 0 * Os_TE_159068 Os_TE_159065 Chr7 15561188 15561189 - RIRE2_LTR 11306 0.0060 (18/2995) 0 * * Os_TE_158953 Chr7 15509268 15509112 + UNIQUE 158 0.1468 (335/2282) 1 Intact Os_TE_158950 Os_TE_158950 Chr7 15509112 15509268 - UNIQUE 158 0.1496 (339/2266) 1 Intact Os_TE_158953 Os_TE_158949 Chr7 15509061 15509060 + ORSgTEMT01400031 216 0.8386 (1709/2038) 0 * * Os_TE_158934 Chr7 15504266 15504265 - TEMPINDAS 4259 0.8971 (2669/2975) 0 * * Os_TE_158928 Chr7 15501891 15501892 - RIRE3A_LTR 10580 0.0028 (7/2458) 0 * Os_TE_158927 Os_TE_158927 Chr7 15501887 15501886 + RIRE3A_LTR 10580 0.0020 (5/2470) 0 * Os_TE_158928 Os_TE_158840 Chr7 15460250 15460249 - COPIA2-LTR_OS 6433 0.0029 (1/350) 0 * * Os_TE_158838 Chr7 15455569 15455568 + RIRE3_LTR 12054 0.0035 (2/570) 0 * * Os_TE_158827 Chr7 15450062 15450061 + RPO_OS 1983 0.8827 (2446/2771) 0 * * Os_TE_158820 Chr7 15445709 15445708 + NDNA1TNA_OS 334 0.0017 (5/2859) 0 * Os_TE_158819 Os_TE_158819 Chr7 15445708 15445709 + ORSgTEMT00100272 356 0.0017 (5/2986) 0 * Os_TE_158820 Os_TE_158818 Chr7 15445525 15445162 - ORSgTEMT00600524 364 0.1091 (327/2996) 1 Intact Os_TE_158817 Os_TE_158817 Chr7 15445162 15445522 + ORSgTEMT00600272 361 0.1073 (321/2993) 1 Intact Os_TE_158818 Os_TE_158816 Chr7 15444739 15444589 - ORSgTEMT00502293 151 0.1076 (322/2993) 1 Intact Os_TE_158814 Os_TE_158814 Chr7 15444587 15444735 + ORSgTEMT00501601 153 0.1105 (331/2995) 1 Intact Os_TE_158816 Os_TE_158813 Chr7 15443883 15443884 + COPI2_LTR 4733 0.0010 (3/2980) 0 * Os_TE_158812 Os_TE_158812 Chr7 15443879 15443878 - COPI2_LTR 4733 0.0010 (3/2995) 0 * Os_TE_158813 Os_TE_158811 Chr7 15443239 15442564 - ORSgTEMT00100272 356 0.1186 (328/2766) 1 Intact * Os_TE_158795 Chr7 15439568 15439567 + ORSgTEMT00901138 254 0.0058 (5/869) 0 * * Os_TE_158793 Chr7 15439288 15439287 - ORSiCMCM00100013 9728 0.8837 (2461/2785) 0 * * Os_TE_158790 Chr7 15437433 15436488 + OSTE1 801 0.1178 (329/2793) 1 Intact * Os_TE_158788 Chr7 15436208 15436059 + ORSgTEMT00501786 149 0.1140 (329/2886) 1 Intact Os_TE_158786 Os_TE_158786 Chr7 15436055 15436206 - ORSgTEMT00500773 153 0.1214 (340/2800) 1 Intact Os_TE_158788 Os_TE_158773 Chr7 15432594 15432595 - RIRE7_LTR 7615 0.0553 (57/1031) 0 * * Os_TE_158771 Chr7 15431878 15432227 - ORSgTEMT00600478 361 0.5216 (314/602) 1 Intact * Os_TE_158770 Chr7 15431870 15431871 - ORSgTEMT00900099 250 0.0128 (4/312) 0 * * Os_TE_158766 Chr7 15429902 15429759 + ORSgTEMT00500476 150 0.1349 (336/2490) 1 Intact Os_TE_158764 Os_TE_158764 Chr7 15429752 15429900 - ORSgTEMT00502388 148 0.5577 (324/581) 1 Intact Os_TE_158766 Os_TE_158748 Chr7 15425359 15425360 - MERMITEJ 1498 0.8937 (2598/2907) 0 * * Os_TE_158746 Chr7 15424437 15424281 + UNIQUE 158 0.1093 (326/2982) 1 Intact Os_TE_158745 Os_TE_158745 Chr7 15424280 15424437 - UNIQUE 158 0.1076 (321/2984) 1 Intact Os_TE_158746 Os_TE_158744 Chr7 15421436 15420467 + ORSgTEMT00500201 140 0.1098 (327/2979) 1 Intact Os_TE_158742 Os_TE_158742 Chr7 15420464 15421430 - ORSgTETNOOT00544 147 0.1204 (311/2582) 1 Intact Os_TE_158744 Os_TE_158740 Chr7 15419859 15419629 + STOWAWAY43_OS 233 0.1531 (336/2195) 1 Intact Os_TE_158739 Os_TE_158739 Chr7 15419629 15419859 - STOWAWAY43_OS 233 0.1140 (324/2841) 1 Intact Os_TE_158740 Os_TE_158726 Chr7 15417063 15417064 + MDR2 6967 0.0025 (7/2815) 0 * * Os_TE_158706 Chr7 15414261 15414260 + ORSgTETNOOT00908 242 0.0042 (12/2878) 0 * * Os_TE_158693 Chr7 15411359 15413942 + SEVERIN-2 1952 0.1012 (280/2767) 1 Intact * Os_TE_158690 Chr7 15411035 15411034 + ORSgTEMT01400031 216 0.0017 (5/2939) 0 * * Os_TE_158689 Chr7 15410617 15410618 - ORSgTEMT00500278 141 0.0017 (5/2987) 0 * * Os_TE_158687 Chr7 15410328 15410329 - NDNA2TNA_OS 346 0.0003 (1/2991) 0 * * Os_TE_158685 Chr7 15410082 15410083 - STOWAWAY51_OS 246 0.0003 (1/2955) 0 * * Os_TE_158683 Chr7 15409976 15409734 + ORSgTEMT01601591 242 0.1160 (338/2913) 1 Intact Os_TE_158681 Os_TE_158681 Chr7 15409731 15409976 + STOWAWAY51_OS 246 0.1356 (402/2965) 1 Intact Os_TE_158683 Os_TE_158669 Chr7 15400319 15400320 - INDITTO 263 0.4096 (1223/2986) 0 * Os_TE_158668 Os_TE_158668 Chr7 15400317 15400316 + INDITTO 263 0.4147 (1240/2990) 0 * Os_TE_158669 Os_TE_158667 Chr7 15400228 15400229 + RIRE2_LTR 11306 0.0051 (15/2946) 0 * Os_TE_158666 Os_TE_158666 Chr7 15400224 15400223 - RIRE2_LTR 11306 0.0051 (15/2951) 0 * Os_TE_158667 Os_TE_158621 Chr7 15388960 15388959 + ORSgTEMT01602051 240 0.1745 (522/2992) 0 * Os_TE_158620 Os_TE_158620 Chr7 15388957 15388958 - TREP215 239 0.1759 (527/2996) 0 * Os_TE_158621 Os_TE_158614 Chr7 15385567 15385568 + STOWAWAY51_OS 246 0.0024 (7/2878) 0 * * Os_TE_158611 Chr7 15385454 15385453 + NDNA1TNA_OS 334 0.4102 (1161/2830) 0 * * Os_TE_158608 Chr7 15385388 15385387 - TESS 244 0.0058 (17/2946) 0 * * Os_TE_158603 Chr7 15381121 15381120 - COPIA2-LTR_OS 6433 0.0007 (2/2951) 0 * * Os_TE_158577 Chr7 15371273 15371274 - RETRO1_LTR 8314 0.0079 (22/2774) 0 * Os_TE_158576 Os_TE_158576 Chr7 15371269 15371268 + RETRO1_LTR 8314 0.0387 (21/542) 0 * Os_TE_158577 Os_TE_158575 Chr7 15371196 15371195 + ORSgTEMT01701104 154 0.5570 (689/1237) 0 * Os_TE_158574 Os_TE_158574 Chr7 15371192 15371193 - ORSgTEMT01700299 212 0.8106 (2204/2719) 0 * Os_TE_158575 Os_TE_158570 Chr7 15368720 15368721 + SEVERIN-2 1952 0.0137 (41/2982) 0 * * Os_TE_158568 Chr7 15367330 15367331 - RETROSOR2_LTR 11699 0.0013 (4/2985) 0 * Os_TE_158567 Os_TE_158567 Chr7 15367326 15367325 + RETROSOR2_LTR 11699 0.0013 (4/2985) 0 * Os_TE_158568 Os_TE_158562 Chr7 15366841 15366840 + ORSgTEMT00900319 250 0.8261 (2470/2990) 0 * * Os_TE_158561 Chr7 15366754 15366755 - DITTO 244 0.8243 (2459/2983) 0 * * Os_TE_158557 Chr7 15365251 15365013 + ORSgTEMT01602413 239 0.1827 (546/2988) 1 Intact Os_TE_158556 Os_TE_158556 Chr7 15365013 15365251 - ORSgTEMT01602413 239 0.1826 (542/2969) 1 Intact Os_TE_158557 Os_TE_158555 Chr7 15364720 15362592 + SEVERIN-2 1952 0.8478 (557/657) 1 Intact * Os_TE_158551 Chr7 15360394 15360393 - WANDERER 232 0.8068 (2243/2780) 0 * * Os_TE_158550 Chr7 15360170 15360171 - RIRE2_LTR 11306 0.1665 (494/2967) 0 * Os_TE_158549 Os_TE_158549 Chr7 15360166 15360165 + RIRE2_LTR 11306 0.1673 (492/2940) 0 * Os_TE_158550 Os_TE_158548 Chr7 15358561 15358562 + SEVERIN-2 1952 0.0037 (11/2955) 0 * * Os_TE_158546 Chr7 15358004 15356960 + DS-RICE4N 715 0.1959 (540/2756) 1 Intact Os_TE_158543 Os_TE_158543 Chr7 15356960 15358004 + DS-RICE4N 715 0.5183 (552/1065) 1 Intact Os_TE_158546 Os_TE_158536 Chr7 15354963 15354747 - TYPEM 227 0.3549 (1054/2970) 1 Intact Os_TE_158532 Os_TE_158532 Chr7 15354744 15354962 + ORSgTEMT02400116 209 0.3642 (1055/2897) 1 Intact Os_TE_158536 Os_TE_158530 Chr7 15354612 15354613 + COPIA2-LTR_OS 6433 0.0256 (53/2071) 0 * Os_TE_158529 Os_TE_158529 Chr7 15354608 15354607 - COPIA2-LTR_OS 6433 0.0389 (115/2959) 0 * Os_TE_158530 Os_TE_158527 Chr7 15354586 15354293 + SINE9_OS 293 0.3615 (1057/2924) 1 Intact Os_TE_158526 Os_TE_158526 Chr7 15354289 15354586 - SINE9_OS 293 0.2234 (562/2516) 1 Intact Os_TE_158527 Os_TE_158524 Chr7 15353980 15352529 + MERMITEA 1710 0.3486 (1040/2983) 1 Intact Os_TE_158521 Os_TE_158521 Chr7 15352529 15353980 + MERMITEA 1710 0.3508 (1047/2985) 1 Intact Os_TE_158524 Os_TE_158518 Chr7 15352178 15352177 + RIREX_LTR 8828 0.0003 (1/2967) 0 * * Os_TE_158516 Chr7 15351602 15351603 - RIRE2_LTR 11306 0.0017 (5/2961) 0 * Os_TE_158515 Os_TE_158515 Chr7 15351598 15351597 - ORSgTERT00201216 11284 0.0017 (5/2972) 0 * Os_TE_158516 Os_TE_158511 Chr7 15348064 15348065 - SC-3_LTR 5748 0.0003 (1/2997) 0 * Os_TE_158510 Os_TE_158510 Chr7 15348060 15348059 + ORSiTERTOOT00296 5553 0.0003 (1/2997) 0 * Os_TE_158511 Os_TE_158504 Chr7 15345230 15345458 - STOWAWAY43_OS 233 0.3512 (1051/2993) 1 Intact * Os_TE_158501 Chr7 15343679 15343680 - SC-8_LTR 4951 0.0003 (1/2986) 0 * Os_TE_158500 Os_TE_158500 Chr7 15343675 15343674 + SC-8_LTR 4951 0.0003 (1/2986) 0 * Os_TE_158501 Os_TE_158498 Chr7 15339741 15339742 + ORSgTEMT01701200 154 0.0005 (1/1983) 0 * * Os_TE_158497 Chr7 15338909 15338908 + TNR2A 152 0.0003 (1/2877) 0 * * Os_TE_158495 Chr7 15338453 15338452 - ORSgTERT00201216 11284 0.0264 (79/2987) 0 * * Os_TE_158494 Chr7 15338410 15338411 + ORSgTEMT01700632 122 0.6593 (1972/2991) 0 * * Os_TE_158483 Chr7 15334810 15334811 + TRUNCATOR2_LTR 2904 0.0392 (45/1148) 0 * Os_TE_158482 Os_TE_158482 Chr7 15334806 15334805 - TRUNCATOR2_LTR 2904 0.0399 (46/1152) 0 * Os_TE_158483 Os_TE_158476 Chr7 15331627 15331628 - RETROSAT3_LTR 11537 0.5411 (421/778) 0 * * Os_TE_158464 Chr7 15325799 15325800 + MPING 430 0.0004 (1/2824) 0 * Os_TE_158463 Os_TE_158463 Chr7 15325797 15325796 - MPING 430 0.0004 (1/2835) 0 * Os_TE_158464 Os_TE_158459 Chr7 15324420 15325636 + COPIA1-LTR_OS 9292 0.3683 (1040/2824) 1 Solo_LTR * Os_TE_158457 Chr7 15324121 15324120 + STOLA 369 0.6481 (1825/2816) 0 * * Os_TE_158450 Chr7 15320671 15320670 + ORSgTEMT01702004 154 0.6271 (1715/2735) 0 * * Os_TE_158443 Chr7 15319208 15319209 - RETRO1_LTR 8314 0.0103 (11/1067) 0 * Os_TE_158442 Os_TE_158442 Chr7 15319204 15319203 + RETRO2A_LTR 12895 0.0106 (12/1127) 0 * Os_TE_158443 Os_TE_158440 Chr7 15317816 15317815 + ENSPM2_OS 10580 0.0037 (4/1082) 0 * * Os_TE_158437 Chr7 15316644 15316643 + ORSgTEMT01602181 239 0.0004 (1/2715) 0 * Os_TE_158436 Os_TE_158436 Chr7 15316641 15316642 + ORSgTEMT01602181 239 0.0004 (1/2431) 0 * Os_TE_158437 Os_TE_158434 Chr7 15316506 15316215 - STOWAWAY11_OS 292 0.3818 (1038/2719) 1 Intact Os_TE_158432 Os_TE_158432 Chr7 15316215 15316506 + STOWAWAY11_OS 292 0.3838 (1049/2733) 1 Intact Os_TE_158434 Os_TE_158412 Chr7 15312294 15312295 + STOWAWAY1_OS 149 0.6584 (1958/2974) 0 * Os_TE_158411 Os_TE_158411 Chr7 15312293 15312292 - STOWAWAY1_OS 149 0.6606 (1972/2985) 0 * Os_TE_158412 Os_TE_158397 Chr7 15306839 15306838 - TRUNCATOR2_LTR 2904 0.0003 (1/2972) 0 * * Os_TE_158395 Chr7 15306470 15306469 - RIREX_LTR 8828 0.0459 (136/2964) 0 * * Os_TE_158387 Chr7 15302229 15300792 - MDR2 6967 0.3461 (1032/2982) 1 Intact Os_TE_158386 Os_TE_158386 Chr7 15300792 15302228 - MDR2 6967 0.3606 (1039/2881) 1 Intact Os_TE_158387 Os_TE_158381 Chr7 15298809 15298810 + SZ-55_LTR 10318 0.0003 (1/2998) 0 * Os_TE_158380 Os_TE_158380 Chr7 15298805 15298804 - SZ-55_LTR 10318 0.0003 (1/2997) 0 * Os_TE_158381 Os_TE_158377 Chr7 15297431 15297430 + ORSgTEMT00300063 413 0.0343 (102/2973) 0 * * Os_TE_158368 Chr7 15293915 15293916 - CPSC4A_LTR 5182 0.0281 (84/2989) 0 * Os_TE_158367 Os_TE_158367 Chr7 15293908 15293907 + CPSC4A_LTR 5182 0.0301 (90/2987) 0 * Os_TE_158368 Os_TE_158353 Chr7 15285578 15285579 + COPIA2-LTR_OS 6433 0.0004 (1/2419) 0 * * Os_TE_158342 Chr7 15281071 15281072 + STOWAWAY41_OS 264 0.0338 (100/2962) 0 * * Os_TE_158314 Chr7 15269293 15269294 + RETRO2_LTR 12874 0.1233 (356/2888) 0 * Os_TE_158313 Os_TE_158313 Chr7 15269289 15269288 - RETRO2_LTR 12874 0.1233 (357/2895) 0 * Os_TE_158314 Os_TE_158308 Chr7 15266148 15266147 + SPMLIKE 10989 0.0729 (211/2895) 0 * * Os_TE_158290 Chr7 15258221 15258220 + TRUNCATOR 2918 0.0727 (207/2846) 0 * * Os_TE_158287 Chr7 15257507 15257508 - MIDWAY 985 0.0293 (86/2933) 0 * * Os_TE_158282 Chr7 15256300 15256299 - ORSgTEMT01600750 238 0.0272 (81/2973) 0 * * Os_TE_158277 Chr7 15255908 15255907 - CACTA-N 987 0.0256 (76/2964) 0 * * Os_TE_158276 Chr7 15255788 15255787 - ORSgTEMT01601208 238 0.0266 (79/2970) 0 * Os_TE_158275 Os_TE_158275 Chr7 15255785 15255786 - ORSgTEMT01600639 228 0.0263 (78/2966) 0 * Os_TE_158276 Os_TE_158272 Chr7 15254289 15254290 + CACTA-G1 797 0.5124 (1512/2951) 0 * * Os_TE_158271 Chr7 15253518 15253517 - ORSgTEMT00900075 250 0.0342 (102/2986) 0 * Os_TE_158270 Os_TE_158270 Chr7 15253514 15253515 - ORSgTEMT00901138 254 0.0277 (83/2995) 0 * Os_TE_158271 Os_TE_158269 Chr7 15253101 15253102 - RIREX_LTR 8828 0.0003 (1/2918) 0 * Os_TE_158268 Os_TE_158268 Chr7 15253097 15253096 + RIREX_LTR 8828 0.0003 (1/2926) 0 * Os_TE_158269 Os_TE_158245 Chr7 15243238 15243237 - ORSgTEMT01602413 239 0.0004 (1/2807) 0 * * Os_TE_158238 Chr7 15236492 15236491 - RIREX_LTR 8828 0.0037 (11/2988) 0 * * Os_TE_158235 Chr7 15232633 15232634 + ORSgTERT00200703 412 0.0025 (7/2835) 0 * * Os_TE_158227 Chr7 15230048 15230049 - STOWAWAY11_OS 292 0.0099 (29/2934) 0 * * Os_TE_158199 Chr7 15221678 15221679 + COPI2_LTR 4733 0.0003 (1/2985) 0 * Os_TE_158198 Os_TE_158198 Chr7 15221674 15221673 - COPI2_LTR 4733 0.0003 (1/2982) 0 * Os_TE_158199 Os_TE_158191 Chr7 15219367 15219368 + ORSgTEMT01601122 212 0.0361 (105/2910) 0 * * Os_TE_158176 Chr7 15215542 15215543 - INDITTO 263 0.0206 (56/2719) 0 * * Os_TE_158169 Chr7 15212699 15212700 + COPIA2-LTR_OS 6433 0.0003 (1/2980) 0 * Os_TE_158168 Os_TE_158168 Chr7 15212695 15212694 - COPIA2-LTR_OS 6433 0.0003 (1/2983) 0 * Os_TE_158169 Os_TE_158164 Chr7 15210479 15210480 + ORSiTERTOOT00296 5553 0.0003 (1/2993) 0 * Os_TE_158163 Os_TE_158163 Chr7 15210475 15210474 - SC-3_LTR 5748 0.0006 (1/1763) 0 * Os_TE_158164 Os_TE_158159 Chr7 15205481 15204764 - CLOUD 734 0.3212 (910/2833) 1 Intact Os_TE_158157 Os_TE_158157 Chr7 15204764 15205481 - CLOUD 734 0.2992 (887/2965) 1 Intact Os_TE_158159 Os_TE_158138 Chr7 15196638 15196637 - ORSgTEMT00901723 248 0.0012 (2/1631) 0 * * Os_TE_158102 Chr7 15179482 15179483 + TRUNCATOR 2918 0.3443 (553/1606) 0 * * Os_TE_157861 Chr7 15074633 15074634 + ORSiTERTOOT00296 5553 0.0488 (145/2974) 0 * Os_TE_157860 Os_TE_157860 Chr7 15074629 15074628 - SC-3_LTR 5748 0.0502 (149/2971) 0 * Os_TE_157861 Os_TE_157857 Chr7 15069626 15069627 - ORSgTERT00201216 11284 0.0082 (24/2917) 0 * Os_TE_157856 Os_TE_157856 Chr7 15069622 15069621 - RIRE2_LTR 11306 0.0080 (24/2983) 0 * Os_TE_157857 Os_TE_157851 Chr7 15068180 15068179 + ORSgTEMT00101341 314 0.4386 (1269/2893) 0 * * Os_TE_157820 Chr7 15056986 15056985 + SPMLIKE 10989 0.4987 (1308/2623) 0 * * Os_TE_157817 Chr7 15054956 15054957 + SPMLIKE 10989 0.2370 (315/1329) 0 * Os_TE_157816 Os_TE_157816 Chr7 15054954 15054953 - ORSgTETN00200001 10994 0.1812 (301/1661) 0 * Os_TE_157817 Os_TE_157811 Chr7 15052759 15052760 - RIRE2_LTR 11306 0.0006 (1/1689) 0 * Os_TE_157810 Os_TE_157810 Chr7 15052755 15052754 + RIRE2_LTR 11306 0.0006 (1/1680) 0 * Os_TE_157811 Os_TE_157807 Chr7 15049527 15049526 + ORSiTERTOOT00034 791 0.0281 (46/1635) 0 * * Os_TE_157806 Chr7 15048852 15048853 + SPMLIKE 10989 0.4240 (1202/2835) 0 * * Os_TE_157805 Chr7 15048416 15048415 + COPIA2-LTR_OS 6433 0.4397 (748/1701) 0 * * Os_TE_157798 Chr7 15043223 15043224 + ENSPM4_OS 11610 0.3972 (1084/2729) 0 * * Os_TE_157762 Chr7 15031964 15031963 - ORSgTETN00200001 10994 0.0010 (3/2946) 0 * * Os_TE_157708 Chr7 15007885 15007886 + INDITTO 263 0.0464 (139/2993) 0 * Os_TE_157707 Os_TE_157707 Chr7 15007883 15007882 + ORSgTETNOOT02406 265 0.0438 (131/2988) 0 * Os_TE_157708 Os_TE_157692 Chr7 14998295 14998296 + ORSgTEMT01601787 220 0.3071 (896/2918) 0 * Os_TE_157691 Os_TE_157691 Chr7 14998294 14998293 - ORSgTEMT01601208 238 0.3079 (893/2900) 0 * Os_TE_157692 Os_TE_157690 Chr7 14997798 14997799 + ORSgTEMT01602637 232 0.0378 (82/2171) 0 * * Os_TE_157689 Chr7 14997678 14997679 - ORSgTEMT01600314 233 0.0428 (93/2171) 0 * * Os_TE_157688 Chr7 14997391 14997390 + OSTE18 129 0.0104 (23/2212) 0 * Os_TE_157687 Os_TE_157687 Chr7 14997387 14997388 - OSTE18 129 0.0104 (23/2207) 0 * Os_TE_157688 Os_TE_157681 Chr7 14990227 14989991 - TREP215 239 0.8582 (2094/2440) 1 Intact * Os_TE_157675 Chr7 14988559 14988560 - F118 179 0.0104 (11/1054) 0 * * Os_TE_157673 Chr7 14988531 14988530 + RIREX_LTR 8828 0.0138 (40/2906) 0 * * Os_TE_157671 Chr7 14988506 14988505 - RIREX_LTR 8828 0.0003 (1/2994) 0 * * Os_TE_157663 Chr7 14987520 14987521 - MUDROS1 4932 0.0037 (11/2942) 0 * * Os_TE_157662 Chr7 14987270 14987271 - TNR3 1536 0.0017 (5/2967) 0 * Os_TE_157661 Os_TE_157661 Chr7 14987268 14987267 - ENSPM3_OS 10837 0.0017 (5/2929) 0 * Os_TE_157662 Os_TE_157651 Chr7 14982828 14982829 + RIRE2_LTR 11306 0.0263 (25/951) 0 * Os_TE_157650 Os_TE_157650 Chr7 14982824 14982823 - RIRE2_LTR 11306 0.0242 (23/949) 0 * Os_TE_157651 Os_TE_157617 Chr7 14973224 14973225 - ORSgTEMT01600531 236 0.0429 (44/1025) 0 * Os_TE_157616 Os_TE_157616 Chr7 14973220 14973219 - STOWAWAY51_OS 246 0.6761 (1950/2884) 0 * Os_TE_157617 Os_TE_157615 Chr7 14973214 14973215 + STOWAWAY51_OS 246 0.5783 (1314/2272) 0 * * Os_TE_157613 Chr7 14973175 14959665 + SPMLIKE 10989 0.3712 (976/2629) 1 Intact Os_TE_157588 Os_TE_157588 Chr7 14959658 14973175 - ORSgTETN00200001 10994 0.3122 (891/2854) 1 Intact Os_TE_157613 Os_TE_157587 Chr7 14959334 14959335 - RPO_OS 1983 0.0017 (5/2936) 0 * * Os_TE_157585 Chr7 14958699 14958700 + RIREX_LTR 8828 0.0003 (1/2991) 0 * Os_TE_157584 Os_TE_157584 Chr7 14958695 14958694 - RIREX_LTR 8828 0.0003 (1/2992) 0 * Os_TE_157585 Os_TE_157579 Chr7 14957678 14957679 + DS-RICE4N 715 0.0180 (54/2996) 0 * Os_TE_157578 Os_TE_157578 Chr7 14957671 14957670 - DS-RICE2N 613 0.0187 (56/2997) 0 * Os_TE_157579 Os_TE_157577 Chr7 14957646 14957647 + SZ-5LTR 1223 0.0013 (4/2997) 0 * * Os_TE_157571 Chr7 14956185 14957555 + RIRE1_LTR 8322 0.3265 (977/2992) 1 Solo_LTR * Os_TE_157570 Chr7 14955996 14955995 + ORSgTEMT01602181 239 0.0017 (5/2984) 0 * * Os_TE_157569 Chr7 14955598 14955599 + RIRE2_LTR 11306 0.0010 (3/2985) 0 * Os_TE_157568 Os_TE_157568 Chr7 14955594 14955593 - RIRE2_LTR 11306 0.0010 (3/2985) 0 * Os_TE_157569 Os_TE_157567 Chr7 14955387 14955386 - ORSgTETN00200001 10994 0.0010 (3/2972) 0 * * Os_TE_157555 Chr7 14951689 14951690 - CACTA-H 1152 0.0014 (3/2161) -1 * * Os_TE_157530 Chr7 14946332 14946331 + ORSgTEMT01602255 228 0.0003 (1/2989) 0 * * Os_TE_157528 Chr7 14946045 14946046 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_157527 Os_TE_157527 Chr7 14946041 14946040 + COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_157528 Os_TE_157526 Chr7 14945782 14945783 + RIRE2_LTR 11306 0.0191 (55/2884) 0 * Os_TE_157525 Os_TE_157525 Chr7 14945778 14945777 - RIRE2_LTR 11306 0.0200 (57/2843) 0 * Os_TE_157526 Os_TE_157459 Chr7 14921579 14921578 - OSTE15 1168 0.6676 (1904/2852) 0 * * Os_TE_157450 Chr7 14913644 14913645 + ORSgTEMT00500315 148 0.0006 (1/1749) 0 * * Os_TE_157448 Chr7 14911356 14911357 - ATLANTYS-LTR_OS 13740 0.6667 (1878/2817) 0 * Os_TE_157447 Os_TE_157447 Chr7 14911352 14911351 + SZ-19LTR 1513 0.4531 (816/1801) 0 * Os_TE_157448 Os_TE_157446 Chr7 14910866 14910867 + RIRE3A_LTR 10580 0.0036 (10/2815) 0 * Os_TE_157445 Os_TE_157445 Chr7 14910862 14910861 - RIRE3A_LTR 10580 0.0046 (13/2825) 0 * Os_TE_157446 Os_TE_157444 Chr7 14910293 14910294 + TRUNCATOR2_LTR 2904 0.0042 (12/2834) 0 * * Os_TE_157358 Chr7 14871228 14871227 + COPI1_LTR 4721 0.0047 (5/1057) 0 * * Os_TE_157318 Chr7 14852051 14840963 - RIRE3A_LTR 10580 0.8170 (978/1197) 1 Intact * Os_TE_157293 Chr7 14832075 14832074 - TRUNCATOR2_LTR 2904 0.1135 (114/1004) 0 * * Os_TE_157280 Chr7 14827342 14827343 - ORSiTETNOOT00107 906 0.6159 (1801/2924) 0 * * Os_TE_157266 Chr7 14823740 14823283 - CASTAWAY 364 0.3100 (927/2990) 1 Intact Os_TE_157265 Os_TE_157265 Chr7 14823283 14823740 + CASTAWAY 364 0.3090 (922/2984) 1 Intact Os_TE_157266 Os_TE_157264 Chr7 14822774 14822775 + AMYLTP 383 0.3223 (945/2932) 0 * Os_TE_157263 Os_TE_157263 Chr7 14822766 14822765 - AMYLTP 383 0.3204 (939/2931) 0 * Os_TE_157264 Os_TE_157262 Chr7 14822258 14822259 + SPMLIKE 10989 0.0070 (20/2838) 0 * Os_TE_157261 Os_TE_157261 Chr7 14822256 14822255 - ORSgTETN00200001 10994 0.0105 (30/2867) 0 * Os_TE_157262 Os_TE_157260 Chr7 14822241 14822242 - AMYLTP 383 0.0103 (29/2805) 0 * Os_TE_157259 Os_TE_157259 Chr7 14822233 14822232 + AMYLTP 383 0.0064 (18/2792) 0 * Os_TE_157260 Os_TE_157258 Chr7 14821515 14821516 - COPIA2-LTR_OS 6433 0.0003 (1/2888) 0 * * Os_TE_157171 Chr7 14781734 14781733 - MuDR4_OS 7610 0.0030 (9/2978) 0 * * Os_TE_157159 Chr7 14772008 14772007 - OSTE24 683 0.0010 (3/2975) 0 * * Os_TE_157156 Chr7 14771301 14771302 - RIREX_LTR 8828 0.0017 (5/2982) 0 * Os_TE_157155 Os_TE_157155 Chr7 14771297 14771296 - ORSgTERT00201216 11284 0.0020 (6/2981) 0 * Os_TE_157156 Os_TE_157130 Chr7 14762418 14762419 + SZ-40LTR 2465 0.0201 (60/2991) 0 * Os_TE_157129 Os_TE_157129 Chr7 14762414 14762413 - GYPSY-A_LTR 8951 0.0208 (62/2987) 0 * Os_TE_157130 Os_TE_157128 Chr7 14762238 14761846 + ORSiTERTOOT00392 5205 0.3106 (927/2985) 1 Intact * Os_TE_157080 Chr7 14745828 14745829 + MPING 430 0.0023 (7/2983) 0 * Os_TE_157079 Os_TE_157079 Chr7 14745826 14745825 - MPING 430 0.0024 (7/2978) 0 * Os_TE_157080 Os_TE_157076 Chr7 14741168 14741169 + MPING 430 0.0045 (13/2902) 0 * * Os_TE_157057 Chr7 14737754 14737753 + ORSgTETNOOT00908 242 0.0183 (53/2898) 0 * * Os_TE_157054 Chr7 14736086 14736087 + SPMLIKE 10989 0.0122 (36/2939) 0 * Os_TE_157053 Os_TE_157053 Chr7 14736084 14736083 - ORSgTETN00200001 10994 0.0089 (26/2935) 0 * Os_TE_157054 Os_TE_157050 Chr7 14734233 14734234 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_157049 Os_TE_157049 Chr7 14734229 14734228 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_157050 Os_TE_157047 Chr7 14733195 14733194 + DS-RICE3N 525 0.0141 (42/2974) 0 * * Os_TE_157036 Chr7 14724118 14724117 + KIDDOC 275 0.0003 (1/2994) 0 * * Os_TE_157016 Chr7 14716753 14716752 + RETRO2_LTR 12874 0.0037 (11/2968) 0 * * Os_TE_156981 Chr7 14703343 14703342 + ORSiTERTOOT00034 791 0.0089 (26/2914) 0 * * Os_TE_156959 Chr7 14689865 14689864 + SPMLIKE 10989 0.0171 (51/2985) 0 * * Os_TE_156933 Chr7 14672759 14672758 - TREP215 239 0.6860 (2034/2965) 0 * * Os_TE_156932 Chr7 14672756 14672757 + ORSgTEMT01602051 240 0.6870 (2032/2958) 0 * Os_TE_156931 Os_TE_156931 Chr7 14672751 14672750 + ORSgTEMT01602235 236 0.0101 (10/991) 0 * Os_TE_156932 Os_TE_156929 Chr7 14671995 14671996 + ORSiTERTOOT00226 792 0.0003 (1/2957) 0 * * Os_TE_156928 Chr7 14671755 14671756 + Cassandra_OS-LTR 764 0.0395 (118/2987) 0 * Os_TE_156927 Os_TE_156927 Chr7 14671751 14671750 - Cassandra_OS-LTR 764 0.0385 (115/2986) 0 * Os_TE_156928 Os_TE_156923 Chr7 14669539 14669540 + ORSiTERTOOT00296 5553 0.0003 (1/2991) 0 * * Os_TE_156918 Chr7 14667972 14667973 + TELIA 141 0.0197 (56/2844) 0 * * Os_TE_156889 Chr7 14660285 14660286 + RIRE5-LTR_OS 6427 0.0087 (26/2992) 0 * Os_TE_156888 Os_TE_156888 Chr7 14660278 14660277 - RIRE5-LTR_OS 6427 0.0088 (26/2955) 0 * Os_TE_156889 Os_TE_156857 Chr7 14641785 14641786 + RIRE3_LTR 12054 0.0090 (27/2993) 0 * * Os_TE_156851 Chr7 14636565 14636564 + CRMA1_LTR 7543 0.0003 (1/2922) 0 * * Os_TE_156850 Chr7 14635488 14635489 - MPING 430 0.0054 (16/2980) 0 * Os_TE_156849 Os_TE_156849 Chr7 14635486 14635485 + MPING 430 0.0047 (14/2975) 0 * Os_TE_156850 Os_TE_156827 Chr7 14627996 14627997 + TRUNCATOR 2918 0.0135 (40/2956) 0 * * Os_TE_156815 Chr7 14622016 14622017 + ENSPM4_OS 11610 0.0198 (59/2987) 0 * * Os_TE_156813 Chr7 14621145 14621144 - GAIJIN 147 0.0003 (1/2919) 0 * * Os_TE_156795 Chr7 14612347 14612348 + ORSiTERTOOT00296 5553 0.0003 (1/2996) 0 * Os_TE_156794 Os_TE_156794 Chr7 14612343 14612342 - SC-3_LTR 5748 0.0003 (1/2997) 0 * Os_TE_156795 Os_TE_156792 Chr7 14610291 14610292 + ORSiTERTOOT00296 5553 0.0003 (1/2992) 0 * * Os_TE_156776 Chr7 14601205 14601206 + ENSPM6_OS 9815 0.0128 (38/2969) 0 * * Os_TE_156761 Chr7 14598188 14598189 - SZ-22_LTR 4403 0.0013 (4/2974) 0 * Os_TE_156760 Os_TE_156760 Chr7 14598184 14598183 + ORSiTERTOOT00226 792 0.0013 (4/2969) 0 * Os_TE_156761 Os_TE_156736 Chr7 14592727 14592728 + RIREX_LTR 8828 0.0017 (5/2979) 0 * * Os_TE_156717 Chr7 14588969 14588970 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_156716 Os_TE_156716 Chr7 14588965 14588964 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_156717 Os_TE_156713 Chr7 14587406 14587286 - SINE1R5_OS 121 0.3049 (905/2968) 1 Intact Os_TE_156712 Os_TE_156712 Chr7 14587286 14587404 + SINE1OS 127 0.3063 (912/2977) 1 Intact Os_TE_156713 Os_TE_156708 Chr7 14585485 14585486 + RIREX_LTR 8828 0.0612 (183/2990) 0 * Os_TE_156707 Os_TE_156707 Chr7 14585481 14585480 - RIREX_LTR 8828 0.0605 (181/2991) 0 * Os_TE_156708 Os_TE_156698 Chr7 14581687 14581688 + STOWAWAY30-2_OS 120 0.0003 (1/2886) 0 * * Os_TE_156678 Chr7 14572495 14572496 - ORSiTETNOOT00216 3569 0.2193 (567/2585) -1 * Os_TE_156677 Os_TE_156677 Chr7 14572488 14572487 + TWIFBIG 3567 0.0843 (186/2207) -1 * Os_TE_156678 Os_TE_156675 Chr7 14572215 14572216 - MuDR2_OS 6770 0.0122 (35/2880) 0 * Os_TE_156674 Os_TE_156674 Chr7 14572206 14572205 + MuDR2_OS 6770 0.0138 (40/2894) 0 * Os_TE_156675 Os_TE_156669 Chr7 14570455 14570456 + CASGRANDA 465 0.0144 (43/2978) 0 * * Os_TE_156639 Chr7 14561283 14561282 + COPI2_LTR 4733 0.0003 (1/2962) 0 * * Os_TE_156632 Chr7 14557955 14557954 + ORSgTEMT05000092 279 0.0003 (1/2956) 0 * * Os_TE_156631 Chr7 14557045 14557046 + RETROSAT2LTR 12796 0.0020 (6/2953) 0 * Os_TE_156630 Os_TE_156630 Chr7 14557043 14557042 - RETROSAT2LTR 12796 0.0013 (4/2984) 0 * Os_TE_156631 Os_TE_156628 Chr7 14556196 14556197 + MPING 430 0.0003 (1/2972) 0 * * Os_TE_156623 Chr7 14551693 14551694 + COPIA2-LTR_OS 6433 0.0003 (1/2977) 0 * Os_TE_156622 Os_TE_156622 Chr7 14551689 14551688 - COPIA2-LTR_OS 6433 0.0003 (1/2981) 0 * Os_TE_156623 Os_TE_156621 Chr7 14551593 14551594 + OSTONOR1_LTR 6440 0.0003 (1/2936) 0 * Os_TE_156620 Os_TE_156620 Chr7 14551589 14551588 - ORSiTERT00100062 5674 0.0003 (1/2941) 0 * Os_TE_156621 Os_TE_156611 Chr7 14550581 14550582 + ORSgTETNOOT00908 242 0.0106 (30/2821) 0 * * Os_TE_156608 Chr7 14548603 14548602 - COPI2_LTR 4733 0.0003 (1/2982) 0 * * Os_TE_156598 Chr7 14547247 14547248 + TRUNCATOR2_LTR 2904 0.0108 (30/2780) 0 * Os_TE_156597 Os_TE_156597 Chr7 14547243 14547242 - TRUNCATOR2_LTR 2904 0.0384 (110/2861) 0 * Os_TE_156598 Os_TE_156547 Chr7 14524622 14524623 - ORSiTETNOOT00200 3563 0.0586 (159/2715) 0 * Os_TE_156546 Os_TE_156546 Chr7 14524615 14524614 + TWIFBIG 3567 0.0574 (170/2962) 0 * Os_TE_156547 Os_TE_156543 Chr7 14521582 14521583 - COPIA2-LTR_OS 6433 0.0003 (1/2962) 0 * Os_TE_156542 Os_TE_156542 Chr7 14521578 14521577 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_156543 Os_TE_156524 Chr7 14513491 14513492 - TELIA 141 0.0024 (7/2962) 0 * * Os_TE_156520 Chr7 14512983 14512771 + ORSgTETNOOT00072 203 0.2212 (652/2948) 1 Intact Os_TE_156519 Os_TE_156519 Chr7 14512755 14512982 + ORSgTETNOOT02079 228 0.2404 (667/2775) 1 Intact Os_TE_156520 Os_TE_156511 Chr7 14504452 14504453 + OSMU5 4881 0.0027 (7/2551) 0 * * Os_TE_156488 Chr7 14496850 14496849 - TRUNCATOR 2918 0.0008 (2/2634) 0 * * Os_TE_155611 Chr7 13999641 14012778 - RIRE3A_LTR 10580 0.8830 (672/761) 1 Intact * Os_TE_155479 Chr7 13858022 13858023 - ORSiTERTOOT00123 1836 0.1547 (462/2986) 0 * * Os_TE_155470 Chr7 13855985 13855986 + RIREX_LTR 8828 0.0264 (79/2988) 0 * Os_TE_155469 Os_TE_155469 Chr7 13855981 13855980 - RIREX_LTR 8828 0.0272 (81/2978) 0 * Os_TE_155470 Os_TE_155460 Chr7 13854249 13854250 - ENSPM4_OS 11610 0.0017 (5/2974) 0 * * Os_TE_155459 Chr7 13853817 13853818 + GYPSY-A_LTR 8951 0.0201 (60/2992) 0 * Os_TE_155458 Os_TE_155458 Chr7 13853813 13853812 - SZ-40LTR 2465 0.0201 (60/2989) 0 * Os_TE_155459 Os_TE_155440 Chr7 13852404 13852405 + TESS 244 0.0842 (250/2968) 0 * Os_TE_155439 Os_TE_155439 Chr7 13852397 13852396 - TESS 244 0.0830 (247/2976) 0 * Os_TE_155440 Os_TE_155436 Chr7 13850956 13850709 - ORSgTEMT00900099 250 0.8547 (2553/2987) 1 Intact * Os_TE_155429 Chr7 13843594 13850697 + COPIA2-LTR_OS 6433 0.2522 (651/2581) 1 Intact * Os_TE_155422 Chr7 13843325 13843572 - ORSgTEMT00901071 248 0.8540 (2550/2986) 1 Intact * Os_TE_155420 Chr7 13842847 13842848 + COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_155419 Os_TE_155419 Chr7 13842843 13842842 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_155420 Os_TE_155290 Chr7 13780646 13780645 + ORSgTETNOOT01834 251 0.0565 (154/2724) 0 * * Os_TE_155289 Chr7 13776671 13776672 + AMYLTP 383 0.0043 (13/2989) 0 * Os_TE_155288 Os_TE_155288 Chr7 13776663 13776662 - AMYLTP 383 0.0043 (13/2989) 0 * Os_TE_155289 Os_TE_155281 Chr7 13775545 13775546 - ORSgTETNOOT01760 137 0.0009 (2/2235) 0 * * Os_TE_155278 Chr7 13775415 13775416 - RETRO1_LTR 8314 0.0007 (2/2951) 0 * Os_TE_155277 Os_TE_155277 Chr7 13775411 13775410 + RETRO2A_LTR 12895 0.0007 (2/2954) 0 * Os_TE_155278 Os_TE_155238 Chr7 13768759 13768760 + SPMLIKE 10989 0.0845 (253/2995) 0 * * Os_TE_155233 Chr7 13767302 13767618 + COPI2_LTR 4733 0.2204 (656/2977) 1 Solo_LTR * Os_TE_155223 Chr7 13764062 13764063 - RETRO1_LTR 8314 0.0734 (199/2710) 0 * * Os_TE_155219 Chr7 13762969 13762970 - SZ-22_LTR 4403 0.0010 (3/2980) 0 * Os_TE_155218 Os_TE_155218 Chr7 13762965 13762964 + ORSiTERTOOT00226 792 0.0010 (3/2980) 0 * Os_TE_155219 Os_TE_155172 Chr7 13748761 13748762 - RETROSAT2LTR 12796 0.3727 (1117/2997) 0 * * Os_TE_154927 Chr7 13656647 13656646 - TRUNCATOR 2918 0.3552 (1039/2925) 0 * Os_TE_154926 Os_TE_154926 Chr7 13656646 13656647 + TRUNCATOR 2918 0.3733 (1114/2984) 0 * Os_TE_154927 Os_TE_154888 Chr7 13650513 13650512 + RETROSAT2LTR 12796 0.0392 (114/2907) 0 * * Os_TE_154864 Chr7 13643020 13643021 + STOWAWAY43_OS 233 0.0279 (81/2907) 0 * * Os_TE_154857 Chr7 13640797 13640796 - SZ-COM 1308 0.0003 (1/2992) 0 * * Os_TE_154854 Chr7 13638901 13638900 + RIRE5-LTR_OS 6427 0.0245 (73/2985) 0 * * Os_TE_154853 Chr7 13638193 13638194 + ORSgTERTOOT00033 8909 0.0277 (83/2996) 0 * * Os_TE_154829 Chr7 13624862 13624863 + MPING 430 0.0003 (1/2874) 0 * * Os_TE_154826 Chr7 13624256 13624255 + SZ-22_LTR 4403 0.0004 (1/2708) 0 * * Os_TE_154814 Chr7 13619321 13619320 - TRUNCATOR 2918 0.0322 (91/2824) 0 * Os_TE_154813 Os_TE_154813 Chr7 13619320 13619321 + TRUNCATOR 2918 0.0428 (122/2848) 0 * Os_TE_154814 Os_TE_154796 Chr7 13605976 13605975 + RIRE2_LTR 11306 0.0273 (81/2968) 0 * * Os_TE_154793 Chr7 13603296 13603297 - SC-3_LTR 5748 0.0003 (1/2988) 0 * Os_TE_154792 Os_TE_154792 Chr7 13603292 13603291 + ORSiTERTOOT00296 5553 0.0003 (1/2989) 0 * Os_TE_154793 Os_TE_154789 Chr7 13601178 13601177 - ENSPM6_OS 9815 0.0003 (1/2996) 0 * * Os_TE_154776 Chr7 13587431 13587432 - MuDR2_OS 6770 0.0045 (13/2858) 0 * Os_TE_154775 Os_TE_154775 Chr7 13587423 13587422 + MuDR2_OS 6770 0.0126 (22/1743) 0 * Os_TE_154776 Os_TE_154747 Chr7 13583301 13583302 - ORSgTETNOOT01607 258 0.0003 (1/2912) 0 * * Os_TE_154742 Chr7 13580152 13578830 + CACTA-B 1103 0.2171 (621/2860) 1 Intact * Os_TE_154740 Chr7 13578542 13578543 + ENSPM3_OS 10837 0.4344 (1288/2965) 0 * Os_TE_154739 Os_TE_154739 Chr7 13578540 13578539 - ENSPM3_OS 10837 0.4386 (1303/2971) 0 * Os_TE_154740 Os_TE_154738 Chr7 13578488 13578126 - ORSgTEMT00600524 364 0.5834 (1735/2974) 1 Intact Os_TE_154736 Os_TE_154736 Chr7 13578126 13578485 - ORSgTEMT00600037 348 0.5897 (1745/2959) 1 Intact Os_TE_154738 Os_TE_154735 Chr7 13577855 13573458 - SZ-22_LTR 4403 0.5851 (1749/2989) 1 Intact Os_TE_154712 Os_TE_154712 Chr7 13573456 13574248 + ORSiTERTOOT00226 792 0.5857 (1749/2986) 1 Intact Os_TE_154735 Os_TE_154711 Chr7 13573259 13572857 - ECR 394 0.5852 (1738/2970) 1 Intact Os_TE_154710 Os_TE_154710 Chr7 13572857 13573257 - ORSgTEMT04200023 393 0.5835 (1740/2982) 1 Intact Os_TE_154711 Os_TE_154704 Chr7 13571423 13571424 - ORSgTETNOOT01930 140 0.0007 (2/2978) 0 * * Os_TE_154656 Chr7 13558728 13558727 + DS-RICE3N 525 0.0108 (32/2958) 0 * * Os_TE_154655 Chr7 13558713 13558712 - CACTA-Q 2268 0.0132 (39/2957) 0 * * Os_TE_154654 Chr7 13557091 13557090 + STOWAWAY47_OS 148 0.3600 (1068/2967) 0.71 * * Os_TE_154653 Chr7 13556905 13556904 + STOWAWAY13_OS 251 0.0228 (66/2895) 0 * * Os_TE_154626 Chr7 13549795 13549794 - ORSgTEMT00500026 147 0.0531 (159/2997) 0 * * Os_TE_154563 Chr7 13518202 13518201 - ORSgTEMT01701266 154 0.0489 (146/2986) 0 * * Os_TE_154544 Chr7 13512504 13512505 - TELIA 141 0.0516 (152/2945) 0 * Os_TE_154543 Os_TE_154543 Chr7 13512496 13512495 + TELIA 141 0.0509 (150/2947) 0 * Os_TE_154544 Os_TE_154524 Chr7 13507011 13507010 + CLOUD-4 520 0.0018 (5/2771) 0 * * Os_TE_154492 Chr7 13489441 13489442 + ORSiTERTOOT00296 5553 0.0013 (4/2986) 0 * Os_TE_154491 Os_TE_154491 Chr7 13489437 13489436 - SC-3_LTR 5748 0.0013 (4/2988) 0 * Os_TE_154492 Os_TE_154490 Chr7 13488279 13488280 - ORSiTETNOOT00134 607 0.0004 (1/2818) 0 * Os_TE_154489 Os_TE_154489 Chr7 13488272 13488271 + TWIF 586 0.0003 (1/2858) 0 * Os_TE_154490 Os_TE_154488 Chr7 13487908 13487909 - MERMITE18E 1528 0.0323 (95/2938) 0 * Os_TE_154487 Os_TE_154487 Chr7 13487904 13487903 - MERMITE18E 1528 0.0470 (140/2978) 0 * Os_TE_154488 Os_TE_154448 Chr7 13472152 13472153 - DNAUN1_OS 408 0.0124 (37/2994) 0 * * Os_TE_154446 Chr7 13471703 13471702 + CRMA1_LTR 7543 0.0531 (159/2994) 0 * * Os_TE_154420 Chr7 13448173 13470434 - RIREX_LTR 8828 0.2054 (612/2980) 1 Intact * Os_TE_154417 Chr7 13447813 13447814 - ORSgTEMT05200270 283 0.0527 (157/2978) 0 * * Os_TE_154409 Chr7 13443008 13443009 - ORSgTEMT01400038 210 0.0417 (122/2926) 0 * * Os_TE_154405 Chr7 13442347 13442348 - JOUZHENA 607 0.0156 (46/2952) 0 * Os_TE_154404 Os_TE_154404 Chr7 13442340 13442339 + JOUZHENA 607 0.0265 (79/2979) 0 * Os_TE_154405 Os_TE_154402 Chr7 13441269 13441270 + ORSgTERT00201382 11280 0.0003 (1/2866) 0 * * Os_TE_154401 Chr7 13440981 13440982 + SZ-40LTR 2465 0.0060 (18/2993) 0 * * Os_TE_154399 Chr7 13440703 13440702 - ZM13-2_OS 108 0.0449 (133/2961) 0 * * Os_TE_154397 Chr7 13439655 13439656 - ORSiTERTOOT00205 2009 0.0003 (1/2983) 0 * * Os_TE_154387 Chr7 13433488 13433489 + JOUZHENA 607 0.0274 (81/2956) 0 * * Os_TE_154357 Chr7 13426410 13426409 - STOWAWAY51_OS 246 0.1963 (587/2991) 0 * * Os_TE_154350 Chr7 13424829 13424602 - F569 228 0.8146 (2407/2955) 1 Intact Os_TE_154348 Os_TE_154348 Chr7 13424601 13424829 + F569 228 0.8122 (2366/2913) 1 Intact Os_TE_154350 Os_TE_154339 Chr7 13422692 13422438 + DITAILA 257 0.8138 (2434/2991) 1 Intact Os_TE_154334 Os_TE_154334 Chr7 13422436 13422690 - DITAILA 257 0.8131 (2432/2991) 1 Intact Os_TE_154339 Os_TE_154299 Chr7 13409103 13408438 - GYPSY1-LTR_OS 8900 0.8140 (2437/2994) 1 Solo_LTR Os_TE_154295 Os_TE_154295 Chr7 13408438 13409104 + GYPSY-B_LTR 7068 0.8134 (2437/2996) 1 Solo_LTR Os_TE_154299 Os_TE_154292 Chr7 13407834 13407833 - SC-3_LTR 5748 0.0004 (1/2445) 0 * * Os_TE_154290 Chr7 13406852 13406853 + ORSiTERTOOT00296 5553 0.0057 (17/2981) 0 * Os_TE_154289 Os_TE_154289 Chr7 13406848 13406847 - SC-3_LTR 5748 0.0057 (17/2987) 0 * Os_TE_154290 Os_TE_154187 Chr7 13360855 13360854 + ORSgTEMT01400032 215 0.6037 (1691/2801) 0 * * Os_TE_154176 Chr7 13353998 13353997 - COPIA2-LTR_OS 6433 0.0003 (1/2961) 0 * * Os_TE_154153 Chr7 13343417 13343416 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * * Os_TE_154115 Chr7 13330251 13330250 - RIRE3_LTR 12054 0.0008 (2/2461) 0 * * Os_TE_154095 Chr7 13324389 13324390 - SZ-22_LTR 4403 0.0003 (1/2943) 0 * Os_TE_154094 Os_TE_154094 Chr7 13324385 13324384 + ORSiTERTOOT00226 792 0.0003 (1/2960) 0 * Os_TE_154095 Os_TE_154086 Chr7 13321346 13321347 + RIRE5-LTR_OS 6427 0.6022 (1777/2951) 0 * Os_TE_154085 Os_TE_154085 Chr7 13321343 13321342 - SZ-9LTR 965 0.6123 (1829/2987) 0 * Os_TE_154086 Os_TE_154081 Chr7 13318728 13318491 - ORSgTEMT01602413 239 0.3875 (1139/2939) 1 Intact * Os_TE_154065 Chr7 13313227 13313226 + STOWAWAY1_OS 149 0.7986 (2320/2905) 0 * * Os_TE_154064 Chr7 13313194 13313195 - STOWAWAY1_OS 149 0.7953 (2223/2795) 0 * * Os_TE_154063 Chr7 13313143 13313142 - TYPEM 227 0.1958 (561/2865) 0 * * Os_TE_154043 Chr7 13289236 13289237 - RIREX_LTR 8828 0.0010 (3/2995) 0 * Os_TE_154042 Os_TE_154042 Chr7 13289232 13289231 + RIREX_LTR 8828 0.0010 (3/2996) 0 * Os_TE_154043 Os_TE_154039 Chr7 13288007 13288006 + ORSgTEMT01700789 143 0.6686 (1975/2954) 0 * Os_TE_154038 Os_TE_154038 Chr7 13288002 13288003 + ORSgTEMT01701591 154 0.6623 (1906/2878) 0 * Os_TE_154039 Os_TE_154037 Chr7 13287660 13287661 + OSTE9 421 0.0005 (1/2106) -1 * * Os_TE_154012 Chr7 13280363 13280364 - ORSgTERT00201216 11284 0.6610 (1954/2956) 0 * Os_TE_154011 Os_TE_154011 Chr7 13280359 13280358 - RIRE2_LTR 11306 0.6628 (1979/2986) 0 * Os_TE_154012 Os_TE_154008 Chr7 13280144 13279394 - KRISPIE 956 0.2044 (603/2950) 1 Intact * Os_TE_153990 Chr7 13259824 13259823 - RIREX_LTR 8828 0.0074 (22/2958) 0 * * Os_TE_153974 Chr7 13258049 13258048 - ORSgTEMT00501158 153 0.8118 (2290/2821) 0 * Os_TE_153973 Os_TE_153973 Chr7 13258045 13258046 - ORSgTEMT00500110 151 0.8172 (2387/2921) 0 * Os_TE_153974 Os_TE_153971 Chr7 13257960 13257959 - INDITTO 263 0.0014 (4/2895) 0 * * Os_TE_153968 Chr7 13257675 13257953 - STOWAWAY13_OS 251 0.2168 (611/2818) 1 Intact * Os_TE_153944 Chr7 13245915 13245914 + ORSiTERTOOT00226 792 0.0003 (1/2885) 0 * * Os_TE_153942 Chr7 13244737 13244738 + OSTE33 1012 0.0260 (73/2810) 0 * Os_TE_153941 Os_TE_153941 Chr7 13244728 13244727 + OSTE33 1012 0.0891 (266/2986) 0 * Os_TE_153942 Os_TE_153930 Chr7 13240380 13240381 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_153929 Os_TE_153929 Chr7 13240376 13240375 + COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_153930 Os_TE_153904 Chr7 13222209 13222742 - ORSgTEMT01800105 452 0.2425 (716/2953) 1 Intact * Os_TE_153900 Chr7 13221026 13221234 + ORSgTEMT01601122 212 0.2341 (695/2969) 1 Intact * Os_TE_153886 Chr7 13219550 13218152 + OSTE33 1012 0.2383 (714/2996) 1 Intact Os_TE_153881 Os_TE_153881 Chr7 13218152 13219549 - OSTE33 1012 0.2285 (678/2967) 1 Intact Os_TE_153886 Os_TE_153872 Chr7 13216025 13216026 + RETRO2_LTR 12874 0.0017 (5/2978) 0 * Os_TE_153871 Os_TE_153871 Chr7 13216021 13216020 - RETRO2_LTR 12874 0.0017 (5/2935) 0 * Os_TE_153872 Os_TE_153870 Chr7 13214826 13214827 + ENSPM_OS 9843 0.7715 (2306/2989) 0 * * Os_TE_153862 Chr7 13212722 13212721 - INDITTO 263 0.7590 (1474/1942) 0 * * Os_TE_153841 Chr7 13210185 13210186 + ORSiTERTOOT00074 4935 0.0007 (2/2957) 0 * Os_TE_153840 Os_TE_153840 Chr7 13210181 13210180 + ORSiTERTOOT00226 792 0.0007 (2/2988) 0 * Os_TE_153841 Os_TE_153813 Chr7 13200262 13200263 - ORSgTETN00200001 10994 0.0003 (1/2996) 0 * Os_TE_153812 Os_TE_153812 Chr7 13200260 13200259 + SPMLIKE 10989 0.0003 (1/2996) 0 * Os_TE_153813 Os_TE_153801 Chr7 13195173 13195174 + TRUNCATOR2_LTR 2904 0.0007 (2/2951) 0 * * Os_TE_153796 Chr7 13194236 13194237 - ORSiCMCM00100014 10855 0.0588 (4/68) -1 * * Os_TE_153725 Chr7 13167596 13167597 - F569 228 0.0102 (22/2158) 0 * * Os_TE_153707 Chr7 13149522 13149523 - MPING 430 0.0004 (1/2845) 0 * * Os_TE_153665 Chr7 13128096 13128097 + RETROSAT3_LTR 11537 0.0450 (128/2846) 0 * Os_TE_153664 Os_TE_153664 Chr7 13128092 13128091 - RETROSAT2LTRA 3112 0.0460 (131/2848) 0 * Os_TE_153665 Os_TE_153657 Chr7 13125288 13125289 - RETROSAT2LTR 12796 0.0003 (1/2887) 0 * * Os_TE_153628 Chr7 13110529 13110528 - ORSgTEMT00101588 319 0.0015 (2/1352) 0 * * Os_TE_153599 Chr7 13101571 13101570 + ORSiTERTOOT00296 5553 0.0003 (1/2993) 0 * * Os_TE_153554 Chr7 13083786 13083787 - RIREX_LTR 8828 0.0030 (9/2995) 0 * Os_TE_153553 Os_TE_153553 Chr7 13083782 13083781 + RIREX_LTR 8828 0.0027 (8/2996) 0 * Os_TE_153554 Os_TE_153536 Chr7 13078786 13078785 + ORSgTEMT00101674 340 0.5780 (1709/2957) 0 * * Os_TE_153535 Chr7 13078557 13078558 - ORSgTEMT02400179 221 0.0370 (110/2976) 0 * * Os_TE_153534 Chr7 13077870 13077871 - ORSgTEMT02400179 221 0.0043 (13/2992) 0 * Os_TE_153533 Os_TE_153533 Chr7 13077869 13077868 - TYPEM 227 0.0047 (14/2991) 0 * Os_TE_153534 Os_TE_153531 Chr7 13074136 13074272 - ORSgTEMT00400012 148 0.2895 (864/2984) 1 Intact * Os_TE_153529 Chr7 13072140 13072139 - ORSgTEMT00100422 344 0.7218 (2099/2908) 0 * * Os_TE_153527 Chr7 13071152 13071153 - RIREX_LTR 8828 0.0379 (111/2925) 0 * Os_TE_153526 Os_TE_153526 Chr7 13071148 13071147 + RIREX_LTR 8828 0.0369 (108/2926) 0 * Os_TE_153527 Os_TE_153525 Chr7 13070937 13069739 + EnSpm-N2_OS 1282 0.2918 (832/2851) 1 Intact * Os_TE_153518 Chr7 13064605 13064604 - QIQI 323 0.7272 (2178/2995) 0 * * Os_TE_153507 Chr7 13058035 13058034 - NDNA2TNA_OS 346 0.0725 (216/2978) 0 * Os_TE_153506 Os_TE_153506 Chr7 13058026 13058027 + NDNA2TNA_OS 346 0.0701 (208/2969) 0 * Os_TE_153507 Os_TE_153505 Chr7 13057699 13057551 - ORSgTEMT01702061 155 0.2877 (854/2968) 1 Intact Os_TE_153504 Os_TE_153504 Chr7 13057545 13057693 - ORSgTEMT01702346 154 0.2867 (850/2965) 1 Intact Os_TE_153505 Os_TE_153481 Chr7 13047687 13047686 - RETROSAT5_LTR 13878 0.0886 (140/1580) 0 * * Os_TE_153479 Chr7 13046253 13046252 - SZ-22_LTR 4403 0.0034 (3/890) 0 * * Os_TE_153477 Chr7 13045481 13045480 + RETRO2A_LTR 12895 0.0246 (72/2925) 0 * * Os_TE_153471 Chr7 13037600 13037601 - TYPEU2 382 0.7166 (2106/2939) 0 * * Os_TE_153466 Chr7 13032106 13032107 - SC-3_LTR 5748 0.0020 (6/2988) 0 * Os_TE_153465 Os_TE_153465 Chr7 13032102 13032101 + ORSiTERTOOT00296 5553 0.0020 (6/2989) 0 * Os_TE_153466 Os_TE_153455 Chr7 13027920 13027919 - ORSgTEMT00500110 151 0.7241 (2142/2958) 0 * * Os_TE_153452 Chr7 13025551 13025552 + ATLANTYS-LTR_OS 13740 0.0017 (5/2997) 0 * * Os_TE_153286 Chr7 12928448 12928449 + CASTAWAY-3 314 0.7272 (2172/2987) 0 * * Os_TE_153283 Chr7 12927553 12927554 - STOWAWAY9_OS 235 0.0013 (4/2989) 0 * Os_TE_153282 Os_TE_153282 Chr7 12927552 12927551 + STOWAWAY9_OS 235 0.0013 (4/2993) 0 * Os_TE_153283 Os_TE_153280 Chr7 12925819 12925820 - SZ-7A_LTR 11400 0.3832 (538/1404) 0 * * Os_TE_153279 Chr7 12925420 12925421 - COPIA2-LTR_OS 6433 0.0062 (10/1623) 0 * Os_TE_153278 Os_TE_153278 Chr7 12925416 12925415 + COPIA2-LTR_OS 6433 0.0040 (12/2963) 0 * Os_TE_153279 Os_TE_153273 Chr7 12922890 12922891 - SUSU 279 0.0017 (5/2943) 0 * Os_TE_153272 Os_TE_153272 Chr7 12922888 12922887 + ORSgTEMT05000092 279 0.0017 (5/2942) 0 * Os_TE_153273 Os_TE_153271 Chr7 12921264 12921265 - SC-3_LTR 5748 0.0003 (1/2937) 0 * Os_TE_153270 Os_TE_153270 Chr7 12921260 12921259 + ORSiTERTOOT00296 5553 0.0003 (1/2983) 0 * Os_TE_153271 Os_TE_153258 Chr7 12910290 12910291 - TRUNCATOR2_LTR 2904 0.0731 (204/2792) 0 * Os_TE_153257 Os_TE_153257 Chr7 12910286 12910285 + TRUNCATOR2_LTR 2904 0.0696 (194/2789) 0 * Os_TE_153258 Os_TE_153236 Chr7 12903650 12903649 + ORSgTEMT02400014 229 0.5839 (1747/2992) 0 * * Os_TE_153155 Chr7 12869406 12869407 + TRUNCATOR 2918 0.5775 (1703/2949) 0 * * Os_TE_153120 Chr7 12860979 12860980 - COPIA2-LTR_OS 6433 0.0011 (3/2787) 0 * * Os_TE_153100 Chr7 12850300 12850301 - ORSgTETN00200001 10994 0.0041 (12/2957) 0 * Os_TE_153099 Os_TE_153099 Chr7 12850298 12850297 + SPMLIKE 10989 0.0037 (11/2960) 0 * Os_TE_153100 Os_TE_153098 Chr7 12849518 12849517 - TRUNCATOR2_LTR 2904 0.0003 (1/2948) 0 * * Os_TE_153096 Chr7 12849090 12849089 - STOWAWAY51_OS 246 0.0003 (1/2971) 0 * * Os_TE_153095 Chr7 12849027 12849026 - ORSgTEMT01400019 216 0.0632 (188/2976) 0 * Os_TE_153094 Os_TE_153094 Chr7 12849024 12849025 - STOWAWAY9_OS 235 0.0655 (195/2976) 0 * Os_TE_153095 Os_TE_153087 Chr7 12847261 12847260 + ORSgTEMT01601591 242 0.0030 (9/2999) 0 * Os_TE_153086 Os_TE_153086 Chr7 12847255 12847256 + STOWAWAY51_OS 246 0.0033 (10/2996) 0 * Os_TE_153087 Os_TE_153081 Chr7 12844021 12844022 + COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_153080 Os_TE_153080 Chr7 12844017 12844016 - COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_153081 Os_TE_153032 Chr7 12823679 12823680 + COPIO_LTR 11693 0.0018 (5/2812) 0 * Os_TE_153031 Os_TE_153031 Chr7 12823675 12823674 - COPIO_LTR 11693 0.0014 (4/2961) 0 * Os_TE_153032 Os_TE_153030 Chr7 12823600 12823601 + RETROSAT3_LTR 11537 0.0345 (102/2955) 0 * * Os_TE_153014 Chr7 12820647 12820648 - CACTA-M 1129 0.0073 (22/2995) 0 * Os_TE_153013 Os_TE_153013 Chr7 12820645 12820644 + CACTA-H 1152 0.0073 (22/2995) 0 * Os_TE_153014 Os_TE_153001 Chr7 12819391 12819390 + STOWAWAY21_OS 243 0.0538 (158/2939) 0 * * Os_TE_152990 Chr7 12812673 12812674 - NDNA1TNA_OS 334 0.0238 (71/2980) 0 * Os_TE_152989 Os_TE_152989 Chr7 12812671 12812670 + NDNA1TNA_OS 334 0.0248 (74/2983) 0 * Os_TE_152990 Os_TE_152983 Chr7 12811159 12811160 - ORSgTEMT00700002 381 0.0003 (1/2942) 0 * * Os_TE_152978 Chr7 12806002 12806001 - TRUNCATOR 2918 0.5853 (1742/2976) 0 * Os_TE_152977 Os_TE_152977 Chr7 12806001 12806002 + TRUNCATOR 2918 0.5789 (1720/2971) 0 * Os_TE_152978 Os_TE_152939 Chr7 12792479 12792480 - TNR2A 152 0.0642 (186/2897) 0 * * Os_TE_152938 Chr7 12792275 12792276 - SZ-67LTR 1540 0.0781 (226/2893) 0 * * Os_TE_152925 Chr7 12790735 12790736 - ORSgTERT00201216 11284 0.0042 (12/2826) 0 * Os_TE_152924 Os_TE_152924 Chr7 12790731 12790730 - RIRE2_LTR 11306 0.0045 (13/2909) 0 * Os_TE_152925 Os_TE_152921 Chr7 12789944 12789945 - TYPEM 227 0.0078 (22/2822) 0 * Os_TE_152920 Os_TE_152920 Chr7 12789943 12789942 - ORSgTEMT02400179 221 0.0074 (21/2844) 0 * Os_TE_152921 Os_TE_152911 Chr7 12784753 12784754 + SC-8_LTR 4951 0.0007 (2/2951) 0 * Os_TE_152910 Os_TE_152910 Chr7 12784749 12784748 - SC-8_LTR 4951 0.0007 (2/2953) 0 * Os_TE_152911 Os_TE_152906 Chr7 12781826 12781827 + TRUNCATOR2_LTR 2904 0.5741 (1704/2968) 0 * * Os_TE_152902 Chr7 12781093 12781092 - SZ-22_LTR 4403 0.0247 (74/2990) 0 * * Os_TE_152901 Chr7 12781082 12781083 - RIRE3_LTR 12054 0.0080 (24/2991) 0 * Os_TE_152900 Os_TE_152900 Chr7 12781078 12781077 + RIRE3_LTR 12054 0.0071 (21/2948) 0 * Os_TE_152901 Os_TE_152899 Chr7 12781006 12781007 - GYPSY-A_LTR 8951 0.0107 (32/2985) 0 * Os_TE_152898 Os_TE_152898 Chr7 12781002 12781001 + GYPSY-A_LTR 8951 0.0107 (32/2988) 0 * Os_TE_152899 Os_TE_152883 Chr7 12779060 12779061 + ECSR 154 0.0017 (5/2978) 0 * * Os_TE_152881 Chr7 12777797 12777796 + COPIA2-LTR_OS 6433 0.0010 (3/2997) 0 * * Os_TE_152873 Chr7 12775338 12775187 - ORSgTEMT01700507 154 0.7415 (978/1319) 1 Intact Os_TE_152872 Os_TE_152872 Chr7 12775189 12775338 + ORSgTEMT01700820 150 0.7407 (994/1342) 1 Intact Os_TE_152873 Os_TE_152833 Chr7 12754781 12754782 - SC-3_LTR 5748 0.0403 (120/2975) 0 * Os_TE_152832 Os_TE_152832 Chr7 12754777 12754776 + ORSiTERTOOT00296 5553 0.0396 (118/2977) 0 * Os_TE_152833 Os_TE_152828 Chr7 12753718 12753719 - SC-3_LTR 5748 0.0003 (1/2981) 0 * Os_TE_152827 Os_TE_152827 Chr7 12753714 12753713 + ORSiTERTOOT00296 5553 0.0003 (1/2981) 0 * Os_TE_152828 Os_TE_152822 Chr7 12750354 12750355 - TYPEM 227 0.0015 (4/2697) 0 * * Os_TE_152813 Chr7 12747484 12747346 - TNR2A 152 0.2343 (699/2983) 1 Intact * Os_TE_152806 Chr7 12746225 12746226 - RIRE5-LTR_OS 6427 0.6895 (2063/2992) 0 * Os_TE_152805 Os_TE_152805 Chr7 12746218 12746217 + RIRE5-LTR_OS 6427 0.6786 (1974/2909) 0 * Os_TE_152806 Os_TE_152803 Chr7 12746031 12746032 + OSTE20 496 0.0044 (13/2988) 0 * Os_TE_152802 Os_TE_152802 Chr7 12746027 12746026 - OSTE20 496 0.0040 (12/2989) 0 * Os_TE_152803 Os_TE_152792 Chr7 12743034 12743033 - ORMOSIA 482 0.0950 (237/2494) 0 * * Os_TE_152732 Chr7 12730876 12730877 + ORSgTEMT00101674 340 0.0757 (225/2974) 0 * * Os_TE_152731 Chr7 12730764 12730763 - NDNA1TNA_OS 334 0.0740 (220/2972) 0 * Os_TE_152730 Os_TE_152730 Chr7 12730759 12730760 + NDNA1TNA_OS 334 0.0656 (194/2958) 0 * Os_TE_152731 Os_TE_152729 Chr7 12730652 12723073 - MuDR4_OS 7610 0.2313 (687/2970) 1 Intact Os_TE_152728 Os_TE_152728 Chr7 12723072 12730651 - MuDR4_OS 7610 0.2494 (688/2759) 1 Intact Os_TE_152729 Os_TE_152726 Chr7 12721673 12721674 + YOUREN 286 0.0784 (233/2972) 0 * * Os_TE_152710 Chr7 12718222 12718223 + BUHUI 375 0.0748 (223/2981) 0 * Os_TE_152709 Os_TE_152709 Chr7 12718220 12718219 - ORSgTEMT03800066 376 0.0739 (220/2978) 0 * Os_TE_152710 Os_TE_152706 Chr7 12716564 12716565 + ORSgTEMT02000038 194 0.0404 (120/2969) 0 * * Os_TE_152704 Chr7 12716057 12716058 - GYPSY-B_LTR 7068 0.0766 (229/2988) 0 * Os_TE_152703 Os_TE_152703 Chr7 12716053 12716052 + GYPSY-B_LTR 7068 0.0760 (227/2988) 0 * Os_TE_152704 Os_TE_152694 Chr7 12714011 12714010 - RIREX_LTR 8828 0.6221 (1854/2980) 0 * * Os_TE_152693 Chr7 12714006 12714007 + RIREX_LTR 8828 0.6269 (1875/2991) 0 * Os_TE_152692 Os_TE_152692 Chr7 12714002 12714001 - RIREX_LTR 8828 0.6227 (1855/2979) 0 * Os_TE_152693 Os_TE_152689 Chr7 12713505 12713504 - RIREX_LTR 8828 0.0003 (1/2998) 0 * * Os_TE_152685 Chr7 12711934 12711935 - RIRE2_LTR 11306 0.5734 (1710/2982) 0 * Os_TE_152684 Os_TE_152684 Chr7 12711930 12711929 - ORSgTERT00201216 11284 0.5815 (1741/2994) 0 * Os_TE_152685 Os_TE_152682 Chr7 12710721 12710720 + COPIA2-LTR_OS 6433 0.0003 (1/2974) 0 * * Os_TE_152674 Chr7 12708571 12708570 + ORSiTERTOOT00226 792 0.0003 (1/2975) 0 * * Os_TE_152640 Chr7 12695535 12695536 + ORSiCMCM00100019 2717 0.7277 (1919/2637) 0 * * Os_TE_152599 Chr7 12684441 12684442 - MuDR3_OS 8604 0.6724 (1792/2665) 0 * Os_TE_152598 Os_TE_152598 Chr7 12684432 12684431 - MuDR3_OS 8604 0.6700 (1805/2694) 0 * Os_TE_152599 Os_TE_152552 Chr7 12666638 12666637 - ORSgTEMT02900061 318 0.0748 (224/2995) 0 * * Os_TE_152549 Chr7 12666410 12666411 - COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_152548 Os_TE_152548 Chr7 12666406 12666405 + COPIA2-LTR_OS 6433 0.0003 (1/2986) 0 * Os_TE_152549 Os_TE_152547 Chr7 12664627 12663964 + TWIFB1 3737 0.2224 (653/2936) 1 Intact * Os_TE_152534 Chr7 12657717 12657718 + RIREX_LTR 8828 0.0042 (5/1197) 0 * * Os_TE_152529 Chr7 12656459 12656460 - ORSiTETNOOT00216 3569 0.0008 (1/1199) 0 * Os_TE_152528 Os_TE_152528 Chr7 12656452 12656451 + TWIFBIG 3567 0.0008 (1/1193) 0 * Os_TE_152529 Os_TE_152477 Chr7 12635289 12635290 - RIRE3_LTR 12054 0.1121 (134/1195) 0 * Os_TE_152476 Os_TE_152476 Chr7 12635285 12635284 + RIRE3_LTR 12054 0.1046 (125/1195) 0 * Os_TE_152477 Os_TE_152462 Chr7 12626327 12626326 + STOWAWAY13_OS 251 0.0034 (6/1763) 0 * * Os_TE_152452 Chr7 12621823 12621822 + RIRE2_LTR 11306 0.0192 (22/1145) 0 * * Os_TE_152438 Chr7 12618983 12618982 - CRM-LTR_OS 7749 0.0009 (1/1133) 0 * * Os_TE_152436 Chr7 12618334 12618333 - SZ-22_LTR 4403 0.0009 (1/1110) 0 * * Os_TE_152432 Chr7 12617413 12617412 + TRUNCATOR 2918 0.1095 (128/1169) 0 * * Os_TE_152360 Chr7 12574535 12574534 - CRMA1_LTR 7543 0.0003 (1/2979) 0 * * Os_TE_152353 Chr7 12566453 12566454 + RIREX_LTR 8828 0.0100 (30/2992) 0 * Os_TE_152352 Os_TE_152352 Chr7 12566449 12566448 - RIREX_LTR 8828 0.0097 (29/2992) 0 * Os_TE_152353 Os_TE_152300 Chr7 12536206 12536207 - TRUNCATOR2_LTR 2904 0.0446 (124/2780) 0 * Os_TE_152299 Os_TE_152299 Chr7 12536202 12536201 + TRUNCATOR2_LTR 2904 0.0438 (122/2786) 0 * Os_TE_152300 Os_TE_152296 Chr7 12534756 12534757 - TRUNCATOR2_LTR 2904 0.6713 (1846/2750) 0 * * Os_TE_152253 Chr7 12524765 12524764 - Cassandra_OS-LTR 764 0.0558 (148/2653) 0 * * Os_TE_152107 Chr7 12467132 12467133 + ORSiTERTOOT00034 791 0.0007 (1/1476) 0 * * Os_TE_152097 Chr7 12465715 12465716 - SZ-22_LTR 4403 0.0008 (1/1202) 0 * Os_TE_152096 Os_TE_152096 Chr7 12465711 12465710 + ORSiTERTOOT00034 791 0.0004 (1/2737) 0 * Os_TE_152097 Os_TE_152050 Chr7 12444359 12444360 - TRUNCATOR2_LTR 2904 0.0007 (2/2979) 0 * Os_TE_152049 Os_TE_152049 Chr7 12444355 12444354 + ORSiCMCM00100019 2717 0.0007 (2/2972) 0 * Os_TE_152050 Os_TE_152029 Chr7 12434091 12434092 + SC-3_LTR 5748 0.0110 (33/2998) 0 * * Os_TE_152014 Chr7 12421091 12421092 - RETROSAT3_LTR 11537 0.0026 (3/1155) 0 * * Os_TE_152012 Chr7 12420970 12420969 + ORSgTETNOOT00908 242 0.7349 (2049/2788) 0 * * Os_TE_152010 Chr7 12420710 12420711 - COPIA2-LTR_OS 6433 0.0004 (1/2792) 0 * * Os_TE_152008 Chr7 12420375 12420376 + RIREX_LTR 8828 0.0004 (1/2795) 0 * Os_TE_152007 Os_TE_152007 Chr7 12420371 12420370 - RIREX_LTR 8828 0.0004 (1/2793) 0 * Os_TE_152008 Os_TE_151999 Chr7 12418846 12418847 + RETRO2_LTR 12874 0.7927 (1988/2508) 0 * * Os_TE_151995 Chr7 12417846 12414665 + RETROSAT2LTR 12796 0.2415 (693/2869) 1 Solo_LTR * Os_TE_151990 Chr7 12414538 12414537 - SZ-22_LTR 4403 0.0003 (1/2880) 0 * * Os_TE_151954 Chr7 12402270 12402271 - RIRE3A_LTR 10580 0.0003 (1/2980) 0 * Os_TE_151953 Os_TE_151953 Chr7 12402266 12402265 + ORSiTERTOOT00027 10853 0.0003 (1/2985) 0 * Os_TE_151954 Os_TE_151952 Chr7 12402204 12402203 + ORSiTERTOOT00226 792 0.0003 (1/2950) 0 * * Os_TE_151852 Chr7 12368360 12368361 + ORSiTERTOOT00034 791 0.0007 (2/2985) 0 * Os_TE_151851 Os_TE_151851 Chr7 12368356 12368355 - SZ-22_LTR 4403 0.0007 (2/2982) 0 * Os_TE_151852 Os_TE_151850 Chr7 12367373 12367374 + TRUNCATOR2_LTR 2904 0.0666 (199/2986) 0 * Os_TE_151849 Os_TE_151849 Chr7 12367369 12367368 - TRUNCATOR2_LTR 2904 0.0680 (203/2986) 0 * Os_TE_151850 Os_TE_151848 Chr7 12367255 12367256 - CRM-LTR_OS 7749 0.6945 (2073/2985) 0 * * Os_TE_151840 Chr7 12365001 12365002 + ORSgTEMT00600376 329 0.0755 (226/2994) 0 * * Os_TE_151834 Chr7 12363728 12363729 + GYPSY-A_LTR 8951 0.0030 (9/2976) 0 * Os_TE_151833 Os_TE_151833 Chr7 12363724 12363723 - SZ-40LTR 2465 0.0027 (8/2982) 0 * Os_TE_151834 Os_TE_151832 Chr7 12363586 12363587 + ORSiTERTOOT00226 792 0.0003 (1/2977) 0 * Os_TE_151831 Os_TE_151831 Chr7 12363582 12363581 - SZ-22_LTR 4403 0.0003 (1/2977) 0 * Os_TE_151832 Os_TE_151828 Chr7 12363225 12363224 + ORSiTERTOOT00034 791 0.0007 (2/2986) 0 * * Os_TE_151738 Chr7 12327791 12327792 + ORSiTERTOOT00226 792 0.0003 (1/2988) 0 * * Os_TE_151720 Chr7 12313552 12313553 - ORSiTERT00100062 5674 0.0248 (74/2978) 0 * Os_TE_151719 Os_TE_151719 Chr7 12313548 12313547 + OSTONOR1_LTR 6440 0.0245 (73/2979) 0 * Os_TE_151720 Os_TE_151634 Chr7 12290397 12290396 - CRM-LTR_OS 7749 0.0007 (2/2810) 0 * * Os_TE_151600 Chr7 12284082 12283291 + ORSiTERTOOT00034 791 0.6159 (712/1156) 1 Intact * Os_TE_151584 Chr7 12282546 12282547 + ORSiTERTOOT00226 792 0.0022 (4/1822) 0 * * Os_TE_151361 Chr7 12110776 12110777 + ORSiTERTOOT00226 792 0.0023 (6/2566) 0 * * Os_TE_151336 Chr7 12108253 12108252 + ORSiTERTOOT00226 792 0.0296 (22/744) 0 * * Os_TE_151326 Chr7 12104618 12104619 + ORSiTERTOOT00226 792 0.0015 (1/686) 0 * * Os_TE_151285 Chr7 12094787 12094788 - SZ-22_LTR 4403 0.0014 (1/696) 0 * * Os_TE_151278 Chr7 12093848 12094755 + ORSiTERTOOT00112 4608 0.8237 (715/868) 1 Intact * Os_TE_151274 Chr7 12092642 12092643 + ORSiTERTOOT00226 792 0.0010 (1/988) 0 * * Os_TE_151245 Chr7 12082319 12075061 + CRMA1_LTR 7543 0.1641 (211/1286) 1 Intact * Os_TE_151220 Chr7 12069090 12060829 + GYPSY1-LTR_OS 8900 0.2536 (214/844) 1 Intact * Os_TE_150930 Chr7 11964712 11964713 - CRM-LTR_OS 7749 0.0020 (5/2489) 0 * * Os_TE_150902 Chr7 11960215 11960214 + ORSiTERTOOT00226 792 0.0004 (1/2850) 0 * * Os_TE_150899 Chr7 11959463 11959464 + ORSiTERTOOT00226 792 0.0003 (1/2918) 0 * * Os_TE_150889 Chr7 11955196 11955197 + ORSiTERTOOT00226 792 0.0004 (1/2737) 0 * * Os_TE_150869 Chr7 11948875 11948876 + ORSiTERTOOT00226 792 0.0453 (124/2739) 0 * Os_TE_150868 Os_TE_150868 Chr7 11948871 11948870 - SZ-22_LTR 4403 0.0450 (129/2865) 0 * Os_TE_150869 Os_TE_150867 Chr7 11948735 11948736 - SZ-22_LTR 4403 0.0014 (4/2863) 0 * Os_TE_150866 Os_TE_150866 Chr7 11948731 11948730 + ORSiTERTOOT00226 792 0.0014 (4/2867) 0 * Os_TE_150867 Os_TE_150865 Chr7 11948712 11948713 + ORSiTERTOOT00226 792 0.0007 (2/2860) 0 * * Os_TE_150862 Chr7 11948691 11948690 - SZ-22_LTR 4403 0.0004 (1/2851) 0 * * Os_TE_150861 Chr7 11948632 11948633 + ORSiTERTOOT00226 792 0.0003 (1/2869) 0 * * Os_TE_150858 Chr7 11947523 11947524 + SZ-22_LTR 4403 0.0007 (2/2863) 0 * Os_TE_150857 Os_TE_150857 Chr7 11947519 11947518 - SZ-22_LTR 4403 0.0007 (2/2866) 0 * Os_TE_150858 Os_TE_150827 Chr7 11939157 11939158 - MuDR3_OS 8604 0.0068 (2/296) 0 * * Os_TE_150781 Chr7 11931152 11931153 - SZ-22_LTR 4403 0.0011 (3/2776) 0 * * Os_TE_150747 Chr7 11914749 11914750 + OSTE33 1012 0.7084 (1980/2795) 0 * Os_TE_150746 Os_TE_150746 Chr7 11914740 11914739 + OSTE33 1012 0.7118 (2008/2821) 0 * Os_TE_150747 Os_TE_150740 Chr7 11913145 11913146 - TEMPINDAS 4259 0.6710 (1870/2787) 0 * Os_TE_150739 Os_TE_150739 Chr7 11913138 11913137 + TEMPINDAS 4259 0.6443 (1860/2887) 0 * Os_TE_150740 Os_TE_150737 Chr7 11912508 11912509 + ORSiTERTOOT00226 792 0.0003 (1/2881) 0 * * Os_TE_150667 Chr7 11889519 11889520 - SC-8_LTR 4951 0.0010 (3/2990) 0 * Os_TE_150666 Os_TE_150666 Chr7 11889515 11889514 + SC-8_LTR 4951 0.0010 (3/2992) 0 * Os_TE_150667 Os_TE_150584 Chr7 11863341 11863342 - STOWAWAY14_OS 258 0.0010 (3/2987) 0 * * Os_TE_150581 Chr7 11861915 11861916 - COPIA2-LTR_OS 6433 0.0003 (1/2981) 0 * * Os_TE_150580 Chr7 11861890 11861891 - CPSC2_LTR 5202 0.0074 (22/2992) 0 * * Os_TE_150538 Chr7 11852825 11852824 - MPING 430 0.0071 (21/2968) 0 * * Os_TE_150536 Chr7 11852583 11852818 - ORSgTEMT02000017 197 0.2320 (694/2992) 0.92 Intact * Os_TE_150449 Chr7 11792496 11804299 - MuDR3_OS 8604 0.8309 (1287/1549) -1 Intact * Os_TE_150447 Chr7 11791186 11791185 + ORSgTEMT01601122 212 0.0287 (86/2993) 0 * Os_TE_150446 Os_TE_150446 Chr7 11791185 11791186 + STOWAWAY21_OS 243 0.0291 (87/2990) 0 * Os_TE_150447 Os_TE_150444 Chr7 11787193 11787194 - STOWAWAY9_OS 235 0.0743 (217/2919) 0 * Os_TE_150443 Os_TE_150443 Chr7 11787192 11787191 + STOWAWAY9_OS 235 0.0754 (220/2919) 0 * Os_TE_150444 Os_TE_150442 Chr7 11786658 11786659 - DS-RICE2N 613 0.0017 (5/2987) 0 * Os_TE_150441 Os_TE_150441 Chr7 11786651 11786650 + DS-RICE2N 613 0.0017 (5/2983) 0 * Os_TE_150442 Os_TE_150429 Chr7 11780974 11780975 + CASGRANDA 465 0.0013 (4/2995) 0 * * Os_TE_150416 Chr7 11777868 11777867 - ATLANTYS-LTR_OS 13740 0.0730 (216/2957) 0 * * Os_TE_150324 Chr7 11740805 11740804 - SZ-22_LTR 4403 0.0014 (4/2877) 0 * * Os_TE_150280 Chr7 11708968 11708969 - RIREX_LTR 8828 0.0003 (1/2876) 0 * Os_TE_150279 Os_TE_150279 Chr7 11708964 11708963 + RIREX_LTR 8828 0.0003 (1/2873) 0 * Os_TE_150280 Os_TE_150254 Chr7 11704393 11704394 - SINE9_OS 293 0.1003 (228/2274) 0 * Os_TE_150253 Os_TE_150253 Chr7 11704381 11704380 + SINE9_OS 293 0.0791 (228/2882) 0 * Os_TE_150254 Os_TE_150248 Chr7 11702812 11702813 - SZ-9LTR 965 0.0803 (225/2803) 0 * * Os_TE_150245 Chr7 11701479 11701480 + SZ-22_LTR 4403 0.0003 (1/2858) 0 * Os_TE_150244 Os_TE_150244 Chr7 11701475 11701474 - SZ-22_LTR 4403 0.0003 (1/2863) 0 * Os_TE_150245 Os_TE_150223 Chr7 11697590 11697591 - SZ-22_LTR 4403 0.0004 (1/2598) 0 * * Os_TE_150144 Chr7 11653583 11654312 - ORSiTERTOOT00076 774 0.2357 (700/2970) 1 Intact * Os_TE_150134 Chr7 11652432 11652433 - ORSgTEMT01702255 155 0.6929 (2028/2927) 0 * * Os_TE_150107 Chr7 11646624 11646625 + ORSgTEMT00300064 397 0.6999 (2076/2966) 0 * * Os_TE_150104 Chr7 11646067 11646066 - MERMITE18B 1306 0.7001 (2045/2921) 0 * * Os_TE_150097 Chr7 11643496 11643495 + RETRO2_LTR 12874 0.6562 (1315/2004) 0 * * Os_TE_150090 Chr7 11639185 11639186 - SZ-22_LTR 4403 0.0011 (1/949) 0 * Os_TE_150089 Os_TE_150089 Chr7 11639181 11639180 + ORSiTERTOOT00034 791 0.0011 (1/875) 0 * Os_TE_150090 Os_TE_150067 Chr7 11630629 11630630 + CACTA-D 1038 0.0064 (6/936) 0 * * Os_TE_150064 Chr7 11630008 11630007 - MUDROS1 4932 0.2495 (234/938) 0 * * Os_TE_150059 Chr7 11627372 11627231 - TELIA 141 0.0797 (202/2534) 1 Intact Os_TE_150057 Os_TE_150057 Chr7 11627220 11627372 + TELIA 141 0.2326 (697/2996) 1 Intact Os_TE_150059 Os_TE_150046 Chr7 11624849 11624848 - RIREX_LTR 8828 0.0044 (13/2983) 0 * * Os_TE_149993 Chr7 11596958 11596959 - ORSgTETNOOT00754 253 0.0685 (202/2950) 0 * * Os_TE_149987 Chr7 11593999 11594000 - SC-8_LTR 4951 0.0064 (19/2971) 0 * Os_TE_149986 Os_TE_149986 Chr7 11593995 11593994 + SC-8_LTR 4951 0.0064 (19/2991) 0 * Os_TE_149987 Os_TE_149985 Chr7 11593813 11593577 + ORSgTETNOOT01686 252 0.2914 (872/2992) 1 Intact * Os_TE_149978 Chr7 11590838 11590839 - COPIA2-LTR_OS 6433 0.0003 (1/2948) 0 * * Os_TE_149968 Chr7 11589030 11587852 + OSTE14 885 0.2499 (686/2745) 1 Intact Os_TE_149965 Os_TE_149965 Chr7 11587850 11589028 - OSTE14 885 0.2438 (662/2715) 1 Intact Os_TE_149968 Os_TE_149929 Chr7 11572828 11572827 - RIRE3_LTR 12054 0.0010 (3/2968) 0 * * Os_TE_149918 Chr7 11570889 11570518 + CASTAWAY 364 0.4105 (931/2268) 1 Intact Os_TE_149916 Os_TE_149916 Chr7 11570514 11570889 - CASTAWAY 364 0.3913 (853/2180) 1 Intact Os_TE_149918 Os_TE_149915 Chr7 11569822 11569821 + GYPSO_LTR 9828 0.0003 (1/2902) 0 * * Os_TE_149910 Chr7 11566119 11566120 + SC-8_LTR 4951 0.0003 (1/2979) 0 * Os_TE_149909 Os_TE_149909 Chr7 11566115 11566114 - SC-8_LTR 4951 0.0003 (1/2978) 0 * Os_TE_149910 Os_TE_149907 Chr7 11565282 11565283 + SC-8_LTR 4951 0.0003 (1/2936) 0 * Os_TE_149906 Os_TE_149906 Chr7 11565278 11565277 - SC-8_LTR 4951 0.0007 (2/2947) 0 * Os_TE_149907 Os_TE_149896 Chr7 11561332 11561333 + ORSiTERTOOT00296 5553 0.0003 (1/2990) 0 * Os_TE_149895 Os_TE_149895 Chr7 11561328 11561327 - SC-3_LTR 5748 0.0003 (1/2988) 0 * Os_TE_149896 Os_TE_149890 Chr7 11559761 11559760 - SC-3_LTR 5748 0.0003 (1/2995) 0 * * Os_TE_149877 Chr7 11552629 11552008 + DS-RICE4N 715 0.3066 (916/2988) 1 Intact Os_TE_149875 Os_TE_149875 Chr7 11552008 11552629 + DS-RICE4N 715 0.3039 (908/2988) 1 Intact Os_TE_149877 Os_TE_149873 Chr7 11549864 11549863 + ORSgTERT00200486 3946 0.6901 (2064/2991) 0 * * Os_TE_149849 Chr7 11534596 11534595 + RETRO2A_LTR 12895 0.0725 (208/2870) 0 * * Os_TE_149835 Chr7 11521714 11521713 + SZ-7A_LTR 11400 0.7063 (2107/2983) 0 * * Os_TE_149834 Chr7 11521629 11521630 + ORSiCMCM00100019 2717 0.0003 (1/2985) 0 * Os_TE_149833 Os_TE_149833 Chr7 11521625 11521624 - TRUNCATOR2_LTR 2904 0.0003 (1/2981) 0 * Os_TE_149834 Os_TE_149829 Chr7 11521101 11521102 + DS-RICE4N 715 0.0010 (3/2988) 0 * * Os_TE_149827 Chr7 11520966 11520967 - MPING 430 0.0013 (4/2988) 0 * Os_TE_149826 Os_TE_149826 Chr7 11520964 11520963 + MPING 430 0.0007 (2/2990) 0 * Os_TE_149827 Os_TE_149825 Chr7 11520746 11520747 - ORSgTETN00200001 10994 0.5905 (1661/2813) 0 * * Os_TE_149821 Chr7 11520653 11520652 - ORSiTERT00200154 9386 0.0046 (13/2847) 0 * * Os_TE_149796 Chr7 11510563 11509663 + TNR2A 152 0.3055 (902/2953) 1 Intact Os_TE_149794 Os_TE_149794 Chr7 11509662 11510562 - TNR2A 152 0.3109 (926/2978) 1 Intact Os_TE_149796 Os_TE_149790 Chr7 11506824 11506823 + ORSgTEMT01601122 212 0.6545 (1705/2605) 0 * * Os_TE_149773 Chr7 11498465 11498466 - TREP215 239 0.0118 (35/2969) 0 * * Os_TE_149761 Chr7 11493473 11493474 - SZ-25LTR 330 0.0014 (4/2866) 0 * Os_TE_149760 Os_TE_149760 Chr7 11493469 11493468 + COPI1_LTR 4721 0.0010 (3/2876) 0 * Os_TE_149761 Os_TE_149744 Chr7 11483053 11483054 - SC-3_LTR 5748 0.0003 (1/2960) 0 * Os_TE_149743 Os_TE_149743 Chr7 11483049 11483048 + ORSiTERTOOT00296 5553 0.0003 (1/2954) 0 * Os_TE_149744 Os_TE_149740 Chr7 11479550 11479551 - RMU1A23 4144 0.0011 (3/2710) 0 * * Os_TE_149718 Chr7 11473940 11473941 - RIREX_LTR 8828 0.0003 (1/2991) 0 * Os_TE_149717 Os_TE_149717 Chr7 11473936 11473935 + RIREX_LTR 8828 0.0007 (2/2986) 0 * Os_TE_149718 Os_TE_149692 Chr7 11457995 11457996 + MUDR_N7_OS 1283 0.0109 (31/2842) 0 * * Os_TE_149690 Chr7 11457849 11457850 - TRUNCATOR2_LTR 2904 0.0003 (1/2952) 0 * * Os_TE_149649 Chr7 11443390 11449834 - GYPSY-A_LTR 8951 0.4205 (1251/2975) 1 Solo_LTR * Os_TE_149639 Chr7 11441515 11441516 + MUDRN5_OS 374 0.0003 (1/2989) 0 * * Os_TE_149638 Chr7 11441507 11441508 + ORSgTEMT00700017 386 0.0003 (1/2992) 0 * * Os_TE_149632 Chr7 11437975 11437974 + ORSiTERTOOT00226 792 0.0003 (1/2967) 0 * * Os_TE_149630 Chr7 11437969 11437968 - CRM-LTR_OS 7749 0.0003 (1/2962) 0 * * Os_TE_149615 Chr7 11433483 11433484 + CACTA-G1 797 0.1666 (499/2995) 0 * * Os_TE_149613 Chr7 11432808 11432809 - KRISPIE 956 0.0547 (71/1297) 0 * * Os_TE_149612 Chr7 11432261 11432262 + COPIA2-LTR_OS 6433 0.0008 (1/1282) 0 * Os_TE_149611 Os_TE_149611 Chr7 11432257 11432256 - COPIA2-LTR_OS 6433 0.0008 (1/1283) 0 * Os_TE_149612 Os_TE_149603 Chr7 11427886 11427887 - TRUNCATOR2_LTR 2904 0.1056 (133/1259) 0 * Os_TE_149602 Os_TE_149602 Chr7 11427882 11427881 + ORSiCMCM00100019 2717 0.0946 (118/1247) 0 * Os_TE_149603 Os_TE_149560 Chr7 11402616 11402615 + ENSPM4_OS 11610 0.0039 (5/1269) 0 * * Os_TE_149553 Chr7 11394668 11401644 + ORSiTERTOOT00028 8600 0.5072 (566/1116) 1 Intact * Os_TE_149536 Chr7 11387536 11387537 + RETRO1_LTR 8314 0.0075 (22/2914) 0 * Os_TE_149535 Os_TE_149535 Chr7 11387532 11387531 - RETRO1_LTR 8314 0.0072 (21/2918) 0 * Os_TE_149536 Os_TE_149529 Chr7 11386510 11386511 - COPIA2-LTR_OS 6433 0.1117 (329/2945) 0 * Os_TE_149528 Os_TE_149528 Chr7 11386506 11386505 + COPIA2-LTR_OS 6433 0.1043 (306/2934) 0 * Os_TE_149529 Os_TE_149510 Chr7 11379337 11377933 + SZ-44LTR 1408 0.6091 (723/1187) 1 Intact * Os_TE_149486 Chr7 11364472 11364473 - SZ-22_LTR 4403 0.0003 (1/2960) 0 * Os_TE_149485 Os_TE_149485 Chr7 11364468 11364467 + ORSiTERTOOT00226 792 0.0003 (1/2959) 0 * Os_TE_149486 Os_TE_149477 Chr7 11358802 11358801 - CACTA-M 1129 0.0014 (4/2797) 0 * * Os_TE_149474 Chr7 11357190 11357191 - ORSgTEMT03000007 372 0.1882 (560/2976) 0 * * Os_TE_149451 Chr7 11345727 11345728 - SZ-5LTR 1223 0.1562 (454/2907) 0 * Os_TE_149450 Os_TE_149450 Chr7 11345724 11345723 + COPIA1-LTR_OS 9292 0.1658 (485/2926) 0 * Os_TE_149451 Os_TE_149448 Chr7 11343857 11343856 + COPI2_LTR 4733 0.0010 (3/2878) 0 * * Os_TE_149444 Chr7 11341026 11341027 + RIRE2_LTR 11306 0.0044 (13/2927) 0 * Os_TE_149443 Os_TE_149443 Chr7 11341022 11341021 - RIRE2_LTR 11306 0.0044 (13/2929) 0 * Os_TE_149444 Os_TE_149440 Chr7 11339516 11339517 + COPIA2-LTR_OS 6433 0.0151 (44/2923) 0 * Os_TE_149439 Os_TE_149439 Chr7 11339512 11339511 - COPIA2-LTR_OS 6433 0.0140 (41/2920) 0 * Os_TE_149440 Os_TE_149438 Chr7 11338375 11338376 + ORSgTEMT01602004 234 0.1605 (460/2866) 0 * * Os_TE_149434 Chr7 11337204 11337205 + SPMLIKE 10989 0.0031 (9/2871) 0 * * Os_TE_149431 Chr7 11337009 11337008 + EnSpm-10_OS 11265 0.0438 (126/2877) 0 * * Os_TE_149430 Chr7 11336831 11336507 - ORSgTEMT01900024 348 0.2638 (735/2786) 1 Intact Os_TE_149429 Os_TE_149429 Chr7 11336476 11336831 - ORSgTEMT01900052 340 0.2653 (731/2755) 1 Intact Os_TE_149430 Os_TE_149388 Chr7 11320994 11320993 + ORSgTETNOOT00908 242 0.0817 (228/2791) 0 * * Os_TE_149351 Chr7 11294126 11294127 - TRUNCATOR2_LTR 2904 0.0004 (1/2823) 0 * * Os_TE_149344 Chr7 11292990 11292991 - TRUNCATOR2_LTR 2904 0.0240 (71/2953) 0 * Os_TE_149343 Os_TE_149343 Chr7 11292986 11292985 + TRUNCATOR2_LTR 2904 0.0245 (73/2983) 0 * Os_TE_149344 Os_TE_149330 Chr7 11289138 11289139 - SC-8_LTR 4951 0.0003 (1/2938) 0 * Os_TE_149329 Os_TE_149329 Chr7 11289134 11289133 + SC-8_LTR 4951 0.0003 (1/2942) 0 * Os_TE_149330 Os_TE_149317 Chr7 11283396 11283395 + ORSiTERTOOT00296 5553 0.0003 (1/2985) 0 * * Os_TE_149315 Chr7 11281521 11281520 + COWARD-3 221 0.5846 (1731/2961) 0 * * Os_TE_149295 Chr7 11267394 11267395 + ORSiCMCM00100013 9728 0.7560 (2191/2898) 0 * * Os_TE_149294 Chr7 11267286 11267285 - RIRE3_LTR 12054 0.0017 (5/2973) 0 * * Os_TE_149272 Chr7 11255341 11255342 - SEVERIN-2 1952 0.7560 (2228/2947) 0 * * Os_TE_149270 Chr7 11254568 11254567 + CACTA-D 1038 0.7574 (2235/2951) 0 * * Os_TE_149262 Chr7 11253703 11253967 - STOWAWAY8_OS 259 0.2599 (748/2878) 1 Intact * Os_TE_149257 Chr7 11248669 11248670 + TRUNCATOR 2918 0.0186 (14/753) 0 * Os_TE_149256 Os_TE_149256 Chr7 11248663 11248662 - ORSiTERT00200154 9386 0.0186 (14/753) 0 * Os_TE_149257 Os_TE_149255 Chr7 11248462 11248461 - ORSgTEMT00900099 250 0.7634 (2281/2988) 0 * Os_TE_149254 Os_TE_149254 Chr7 11248458 11248459 + ORSgTEMT00901844 250 0.7591 (2244/2956) 0 * Os_TE_149255 Os_TE_149250 Chr7 11246998 11247249 + ORSgTETNOOT00908 242 0.3013 (760/2522) 1 Intact * Os_TE_149249 Chr7 11246816 11246817 - SZ-62LTR 3649 0.0247 (74/2996) 0 * Os_TE_149248 Os_TE_149248 Chr7 11246812 11246811 + SZ-62LTR 3649 0.0234 (70/2993) 0 * Os_TE_149249 Os_TE_149218 Chr7 11236472 11236473 + TRUNCATOR 2918 0.0092 (25/2724) 0 * * Os_TE_149201 Chr7 11219694 11219695 - SZ-22_LTR 4403 0.0013 (1/777) 0 * Os_TE_149200 Os_TE_149200 Chr7 11219690 11219689 + ORSiTERTOOT00034 791 0.0013 (1/778) 0 * Os_TE_149201 Os_TE_149195 Chr7 11215869 11216782 - CACTA-H 1152 0.2535 (751/2962) 1 Intact * Os_TE_149194 Chr7 11215746 11212580 - RIRE3A_LTR 10580 0.2487 (707/2843) 1 Solo_LTR Os_TE_149189 Os_TE_149189 Chr7 11212582 11215746 + ORSiTERTOOT00027 10853 0.2638 (701/2657) 1 Intact Os_TE_149194 Os_TE_149188 Chr7 11212525 11212526 + RIREX_LTR 8828 0.0070 (5/714) 0 * Os_TE_149187 Os_TE_149187 Chr7 11212521 11212520 - RIRE2_LTR 11306 0.0070 (5/715) 0 * Os_TE_149188 Os_TE_149186 Chr7 11212504 11212503 + CACTA-L 1162 0.7387 (1951/2641) 0 * Os_TE_149185 Os_TE_149185 Chr7 11212503 11212504 - CACTA-J 1159 0.7547 (2197/2911) 0 * Os_TE_149186 Os_TE_149184 Chr7 11212270 11187178 - MERMITE18E 1528 0.2593 (749/2889) 1 Intact * Os_TE_149118 Chr7 11184513 11184514 - ORSgTEMT01601208 238 0.7552 (2224/2945) 0 * Os_TE_149117 Os_TE_149117 Chr7 11184510 11184509 - ORSgTEMT01600639 228 0.7579 (2244/2961) 0 * Os_TE_149118 Os_TE_149116 Chr7 11184507 11184508 - ORSgTEMT01601208 238 0.7564 (2236/2956) 0 * * Os_TE_149109 Chr7 11183234 11183235 - RIRE2_LTR 11306 0.0080 (24/2988) 0 * * Os_TE_149106 Chr7 11180883 11180884 + F569 228 0.0757 (224/2958) 0 * * Os_TE_149105 Chr7 11180308 11180307 - ORSgTEMT01400010 213 0.0746 (223/2989) 0 * Os_TE_149104 Os_TE_149104 Chr7 11180304 11180305 - ORSgTEMT01400022 212 0.0749 (224/2990) 0 * Os_TE_149105 Os_TE_149103 Chr7 11179676 11179675 + ORSgTEMT00501786 149 0.0766 (221/2885) 0 * * Os_TE_149095 Chr7 11178858 11178857 - ORSiTETNOOT00107 906 0.0033 (9/2753) 0 * Os_TE_149094 Os_TE_149094 Chr7 11178854 11178855 + ORSiTETNOOT00107 906 0.0029 (8/2725) 0 * Os_TE_149095 Os_TE_149093 Chr7 11178352 11178351 + STOWAWAY43_OS 233 0.0787 (228/2898) 0 * * Os_TE_149086 Chr7 11175130 11175131 - OSTE24 683 0.0007 (2/2932) 0 * Os_TE_149085 Os_TE_149085 Chr7 11175120 11175119 - OSTE24 683 0.0003 (1/2977) 0 * Os_TE_149086 Os_TE_149071 Chr7 11172028 11172027 - ORSgTEMT02400246 177 0.0507 (149/2941) 0 * Os_TE_149070 Os_TE_149070 Chr7 11172027 11172028 - TYPEM 227 0.0501 (147/2934) 0 * Os_TE_149071 Os_TE_149069 Chr7 11171939 11171940 - ORSgTEMT01400012 212 0.0014 (4/2948) 0 * * Os_TE_149066 Chr7 11170774 11170775 - RIREX_LTR 8828 0.0003 (1/2873) 0 * Os_TE_149065 Os_TE_149065 Chr7 11170770 11170769 + RIREX_LTR 8828 0.0003 (1/2885) 0 * Os_TE_149066 Os_TE_149063 Chr7 11170264 11170265 - MuDR4_OS 7610 0.0007 (2/2683) 0 * Os_TE_149062 Os_TE_149062 Chr7 11170256 11170255 - MuDR4_OS 7610 0.0007 (2/2751) 0 * Os_TE_149063 Os_TE_149061 Chr7 11170241 11170242 + NDNA1TNA_OS 334 0.0145 (39/2693) 0 * Os_TE_149060 Os_TE_149060 Chr7 11170235 11170234 - NDNA1TNA_OS 334 0.0159 (44/2767) 0 * Os_TE_149061 Os_TE_149047 Chr7 11166011 11166010 + STOWAWAY18_OS 216 0.0018 (5/2803) 0 * * Os_TE_149029 Chr7 11144206 11144205 - TRUNCATOR 2918 0.0042 (12/2876) 0 * * Os_TE_148996 Chr7 11134287 11134286 - TRUNCATOR2_LTR 2904 0.0461 (124/2692) 0 * * Os_TE_148986 Chr7 11128773 11128774 + RIREX_LTR 8828 0.0003 (1/2952) 0 * Os_TE_148985 Os_TE_148985 Chr7 11128769 11128768 - RIREX_LTR 8828 0.0003 (1/2950) 0 * Os_TE_148986 Os_TE_148980 Chr7 11127758 11127759 - ORSgTERT00200165 9093 0.0003 (1/2977) 0 * * Os_TE_148975 Chr7 11117548 11114444 + RIRE3_LTR 12054 0.2460 (678/2756) 1 Solo_LTR * Os_TE_148960 Chr7 11111514 11111513 - TNR3 1536 0.0443 (128/2891) 0 * * Os_TE_148956 Chr7 11110538 11110539 - TRUNCATOR2_LTR 2904 0.0003 (1/2901) 0 * * Os_TE_148954 Chr7 11110501 11110502 - TRUNCATOR2_LTR 2904 0.0110 (32/2901) 0 * Os_TE_148953 Os_TE_148953 Chr7 11110497 11110496 + ORSiCMCM00100019 2717 0.0107 (31/2901) 0 * Os_TE_148954 Os_TE_148951 Chr7 11110224 11110223 - ORSgTETN00200001 10994 0.0395 (118/2989) 0 * * Os_TE_148949 Chr7 11110121 11110120 + RIREX_LTR 8828 0.0751 (225/2995) 0 * * Os_TE_148943 Chr7 11109473 11109474 - RIREX_LTR 8828 0.0762 (228/2991) 0 * * Os_TE_148941 Chr7 11109282 11109283 + ORSiTERTOOT00226 792 0.0004 (1/2779) 0 * Os_TE_148940 Os_TE_148940 Chr7 11109278 11109277 - SZ-22_LTR 4403 0.0004 (1/2747) 0 * Os_TE_148941 Os_TE_148913 Chr7 11093372 11093371 - RIRE3A_LTR 10580 0.0328 (98/2990) 0 * * Os_TE_148912 Chr7 11093026 11093025 + RIREX_LTR 8828 0.0775 (232/2992) 0 * * Os_TE_148901 Chr7 11091467 11091466 - ORSgTEMT00300141 415 0.0067 (20/2983) 0 * * Os_TE_148900 Chr7 11091394 11091393 + ORSgTEMT00300122 416 0.0688 (204/2963) 0 * * Os_TE_148892 Chr7 11089635 11089634 - ORSgTEMT01602413 239 0.0747 (223/2987) 0 * Os_TE_148891 Os_TE_148891 Chr7 11089632 11089633 - ORSgTEMT01602413 239 0.0711 (211/2967) 0 * Os_TE_148892 Os_TE_148886 Chr7 11086891 11086892 - CACTA-M 1129 0.0752 (224/2980) 0 * Os_TE_148885 Os_TE_148885 Chr7 11086889 11086888 + CACTA-I 1124 0.0755 (225/2981) 0 * Os_TE_148886 Os_TE_148884 Chr7 11086833 11086832 - NDNA1TNA_OS 334 0.0318 (94/2952) 0 * * Os_TE_148883 Chr7 11086473 11086474 - SZ-58LTR 114 0.0768 (227/2957) 0 * Os_TE_148882 Os_TE_148882 Chr7 11086469 11086468 - SZ-30_LTR 6377 0.0776 (230/2963) 0 * Os_TE_148883 Os_TE_148873 Chr7 11082944 11082943 - ENSPM4_OS 11610 0.0172 (46/2678) 0 * * Os_TE_148863 Chr7 11077456 11077455 - ORSgTEMT01601493 303 0.0775 (232/2993) 0 * Os_TE_148862 Os_TE_148862 Chr7 11077453 11077454 - ORSgTEMT01601493 303 0.0690 (205/2972) 0 * Os_TE_148863 Os_TE_148860 Chr7 11076749 11076748 - TELIA 141 0.0009 (1/1056) 0 * * Os_TE_148847 Chr7 11073278 11073279 + ORSiTERTOOT00296 5553 0.0003 (1/2999) 0 * Os_TE_148846 Os_TE_148846 Chr7 11073274 11073273 - SC-3_LTR 5748 0.0003 (1/2999) 0 * Os_TE_148847 Os_TE_148839 Chr7 11066596 11066597 + ORSiTERTOOT00296 5553 0.0335 (100/2989) 0 * Os_TE_148838 Os_TE_148838 Chr7 11066592 11066591 - SC-3_LTR 5748 0.0334 (100/2992) 0 * Os_TE_148839 Os_TE_148837 Chr7 11066146 11066147 - SC-3_LTR 5748 0.0003 (1/2990) 0 * Os_TE_148836 Os_TE_148836 Chr7 11066142 11066141 + ORSiTERTOOT00296 5553 0.0004 (1/2785) 0 * Os_TE_148837 Os_TE_148833 Chr7 11064423 11064422 - RETRO1_LTR 8314 0.0434 (129/2970) 0 * * Os_TE_148831 Chr7 11063694 11063695 - MPING 430 0.0003 (1/2996) 0 * Os_TE_148830 Os_TE_148830 Chr7 11063692 11063691 + MPING 430 0.0003 (1/2997) 0 * Os_TE_148831 Os_TE_148829 Chr7 11063259 11063260 - SUSU 279 0.0773 (231/2990) 0 * Os_TE_148828 Os_TE_148828 Chr7 11063257 11063256 + ORSgTEMT05000092 279 0.0758 (226/2983) 0 * Os_TE_148829 Os_TE_148812 Chr7 11056060 11056061 - TRUNCATOR2_LTR 2904 0.0414 (117/2826) 0 * * Os_TE_148810 Chr7 11054746 11054747 + OSTE33 1012 0.0421 (122/2901) 0 * Os_TE_148809 Os_TE_148809 Chr7 11054737 11054736 + OSTE33 1012 0.0771 (231/2998) 0 * Os_TE_148810 Os_TE_148776 Chr7 11039474 11039475 - ORSiTERT00200154 9386 0.0889 (266/2992) 0 * Os_TE_148775 Os_TE_148775 Chr7 11039468 11039467 + TRUNCATOR 2918 0.0878 (263/2995) 0 * Os_TE_148776 Os_TE_148767 Chr7 11033608 11033607 + SC-1_LTR 6888 0.0332 (99/2986) 0 * * Os_TE_148758 Chr7 11032429 11032430 + RIREX_LTR 8828 0.0003 (1/2987) 0 * Os_TE_148757 Os_TE_148757 Chr7 11032425 11032424 - RIREX_LTR 8828 0.0004 (1/2782) 0 * Os_TE_148758 Os_TE_148755 Chr7 11031970 11031971 - AMYLTP 383 0.0246 (73/2964) 0 * Os_TE_148754 Os_TE_148754 Chr7 11031962 11031961 + AMYLTP 383 0.0246 (73/2968) 0 * Os_TE_148755 Os_TE_148753 Chr7 11031862 11031861 + ORSgTEMT01701965 154 0.0730 (217/2974) 0 * Os_TE_148752 Os_TE_148752 Chr7 11031859 11031860 + ORSgTEMT01701591 154 0.0775 (231/2979) 0 * Os_TE_148753 Os_TE_148751 Chr7 11030941 11030942 - CLOUD 734 0.0749 (221/2951) 0 * Os_TE_148750 Os_TE_148750 Chr7 11030933 11030932 - CLOUD 734 0.0773 (228/2951) 0 * Os_TE_148751 Os_TE_148749 Chr7 11030532 11030533 - ORSgTETN00200001 10994 0.0078 (23/2937) 0 * Os_TE_148748 Os_TE_148748 Chr7 11030530 11030529 + CACTA-M 1129 0.0244 (73/2988) 0 * Os_TE_148749 Os_TE_148745 Chr7 11028143 11028142 + ORSiTETN00200006 8216 0.0032 (9/2784) 0 * * Os_TE_148741 Chr7 11026309 11026308 + RIRE3A_LTR 10580 0.0253 (72/2842) 0 * * Os_TE_148671 Chr7 10998947 10998948 + RIREX_LTR 8828 0.0030 (9/2995) 0 * Os_TE_148670 Os_TE_148670 Chr7 10998943 10998942 - RIREX_LTR 8828 0.0030 (9/2993) 0 * Os_TE_148671 Os_TE_148669 Chr7 10997092 10997091 - CACTA-H 1152 0.0759 (227/2992) 0 * * Os_TE_148665 Chr7 10993991 10993992 - RIRE2_LTR 11306 0.0051 (15/2942) 0 * Os_TE_148664 Os_TE_148664 Chr7 10993987 10993986 + RIRE2_LTR 11306 0.0075 (22/2942) 0 * Os_TE_148665 Os_TE_148662 Chr7 10993960 10993959 + COPIA2-LTR_OS 6433 0.0003 (1/2932) 0 * * Os_TE_148660 Chr7 10993207 10993208 + TNR2A 152 0.0744 (222/2983) 0 * Os_TE_148659 Os_TE_148659 Chr7 10993192 10993191 - TNR2A 152 0.0766 (229/2988) 0 * Os_TE_148660 Os_TE_148656 Chr7 10991246 10991247 - COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * Os_TE_148655 Os_TE_148655 Chr7 10991242 10991241 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_148656 Os_TE_148648 Chr7 10989386 10989385 + COPI2_LTR 4733 0.0004 (1/2800) 0 * * Os_TE_148644 Chr7 10987528 10987529 - STOWAWAY44_OS 240 0.0757 (226/2987) 0 * * Os_TE_148642 Chr7 10987377 10987376 - INDITTO 263 0.0722 (216/2991) 0 * * Os_TE_148638 Chr7 10986161 10986162 + ORSgTEMT01601571 232 0.1958 (225/1149) 0 * Os_TE_148637 Os_TE_148637 Chr7 10986157 10986156 - ORSgTEMT01600747 238 0.1972 (228/1156) 0 * Os_TE_148638 Os_TE_148636 Chr7 10986154 10986155 + ORSgTEMT01602669 216 0.1958 (226/1154) 0 * * Os_TE_148634 Chr7 10985988 10985987 - TRUNCATOR 2918 0.0039 (4/1035) 0 * Os_TE_148633 Os_TE_148633 Chr7 10985987 10985988 + TRUNCATOR 2918 0.0038 (4/1042) 0 * Os_TE_148634 Os_TE_148626 Chr7 10981130 10981131 - ORSiTETNOOT00216 3569 0.0007 (2/2748) 0 * Os_TE_148625 Os_TE_148625 Chr7 10981123 10981122 + TWIFBIG 3567 0.0007 (2/2865) 0 * Os_TE_148626 Os_TE_148612 Chr7 10975012 10975013 + MPING 430 0.0003 (1/2879) 0 * Os_TE_148611 Os_TE_148611 Chr7 10975010 10975009 - MPING 430 0.0003 (1/2870) 0 * Os_TE_148612 Os_TE_148545 Chr7 10938809 10938808 + RIREX_LTR 8828 0.0004 (1/2762) 0 * * Os_TE_148531 Chr7 10933836 10933837 - COPIA2-LTR_OS 6433 0.0004 (1/2792) 0 * Os_TE_148530 Os_TE_148530 Chr7 10933832 10933831 + COPIA2-LTR_OS 6433 0.0004 (1/2799) 0 * Os_TE_148531 Os_TE_148489 Chr7 10917974 10917975 - COPIA2-LTR_OS 6433 0.0003 (1/2986) 0 * Os_TE_148488 Os_TE_148488 Chr7 10917970 10917969 + COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * Os_TE_148489 Os_TE_148483 Chr7 10917284 10917285 - INDITTO 263 0.0779 (227/2915) 0 * * Os_TE_148481 Chr7 10916988 10916987 + ORSgTEMT00700017 386 0.0007 (2/2771) 0 * * Os_TE_148480 Chr7 10916736 10916737 - RETROSAT2LTR 12796 0.6671 (1974/2959) 0 * Os_TE_148479 Os_TE_148479 Chr7 10916734 10916733 + ORSiCMCM00100019 2717 0.6252 (1768/2828) 0 * Os_TE_148480 Os_TE_148324 Chr7 10852843 10852844 - TRUNCATOR2_LTR 2904 0.0402 (120/2985) 0 * * Os_TE_148321 Chr7 10852533 10852534 + ATLANTYS-LTR_OS 13740 0.0765 (229/2995) 0 * * Os_TE_148308 Chr7 10845651 10845650 + TRUNCATOR 2918 0.0007 (2/2777) 0 * Os_TE_148307 Os_TE_148307 Chr7 10845650 10845651 - TRUNCATOR 2918 0.0007 (2/2774) 0 * Os_TE_148308 Os_TE_148306 Chr7 10844904 10844905 - TRUNCATOR2_LTR 2904 0.0011 (3/2781) 0 * Os_TE_148305 Os_TE_148305 Chr7 10844900 10844899 + ORSiCMCM00100019 2717 0.0011 (3/2778) 0 * Os_TE_148306 Os_TE_148298 Chr7 10841420 10841421 - RETROSAT2LTR 12796 0.6390 (1784/2792) 0 * * Os_TE_148296 Chr7 10839789 10839790 + ORSiTERTOOT00028 8600 0.0007 (2/2785) 0 * Os_TE_148295 Os_TE_148295 Chr7 10839785 10839784 - TRUNCATOR2_LTR 2904 0.0007 (2/2782) 0 * Os_TE_148296 Os_TE_148294 Chr7 10839570 10839571 - RIREX_LTR 8828 0.0004 (1/2780) 0 * Os_TE_148293 Os_TE_148293 Chr7 10839566 10839565 + RIREX_LTR 8828 0.0004 (1/2774) 0 * Os_TE_148294 Os_TE_148290 Chr7 10838428 10832139 + RIRE3_LTR 12054 0.2900 (803/2769) 1 Solo_LTR * Os_TE_148245 Chr7 10821876 10821877 + ORSiTERTOOT00296 5553 0.0013 (4/2991) 0 * Os_TE_148244 Os_TE_148244 Chr7 10821872 10821871 - SC-3_LTR 5748 0.0010 (3/2995) 0 * Os_TE_148245 Os_TE_148234 Chr7 10816416 10816415 + ORSgTEMT00901138 254 0.0744 (219/2943) 0 * * Os_TE_148222 Chr7 10813708 10813709 - MuDR4_OS 7610 0.7147 (1982/2773) 0 * Os_TE_148221 Os_TE_148221 Chr7 10813702 10813701 + MuDR4_OS 7610 0.7139 (1961/2747) 0 * Os_TE_148222 Os_TE_148205 Chr7 10806249 10806248 + ORSiTERTOOT00226 792 0.0004 (1/2756) 0 * * Os_TE_148200 Chr7 10793920 10800853 + CACTA-B 1103 0.2140 (546/2551) 1 Intact * Os_TE_148163 Chr7 10781675 10781674 - TRUNCATOR 2918 0.7099 (1965/2768) 0 * * Os_TE_148161 Chr7 10781558 10781559 - RIRE3_LTR 12054 0.0029 (3/1039) 0 * * Os_TE_148159 Chr7 10780792 10780793 - TRUNCATOR 2918 0.0100 (13/1296) 0 * * Os_TE_148154 Chr7 10779151 10779152 + ORSiTERTOOT00226 792 0.0018 (2/1097) 0 * * Os_TE_148139 Chr7 10771531 10771530 + MuDR2_OS 6770 0.0044 (12/2755) 0 * * Os_TE_148130 Chr7 10770356 10770357 + STOWAWAY50_OS 174 0.0748 (218/2915) 0 * * Os_TE_148107 Chr7 10761139 10761138 - SZ-22_LTR 4403 0.0004 (1/2797) 0 * * Os_TE_148095 Chr7 10755065 10755064 + CASTAWAY 364 0.0208 (62/2979) 0 * * Os_TE_148077 Chr7 10748670 10748669 - ORSgTEMT01400023 211 0.0190 (57/2995) 0 * Os_TE_148076 Os_TE_148076 Chr7 10748654 10748655 - ORSgTEMT01400014 209 0.0164 (49/2987) 0 * Os_TE_148077 Os_TE_148074 Chr7 10748155 10748156 + RIREX_LTR 8828 0.0037 (11/2980) 0 * Os_TE_148073 Os_TE_148073 Chr7 10748151 10748150 - RIREX_LTR 8828 0.0037 (11/2986) 0 * Os_TE_148074 Os_TE_148072 Chr7 10748101 10748102 + TRUNCATOR 2918 0.0207 (62/2992) 0 * Os_TE_148071 Os_TE_148071 Chr7 10748095 10748094 - ORSiTERT00200154 9386 0.0187 (56/2988) 0 * Os_TE_148072 Os_TE_148055 Chr7 10746209 10746208 - RIRE3A_LTR 10580 0.0010 (3/2930) 0 * * Os_TE_148044 Chr7 10741204 10741205 - ENSPM3_OS 10837 0.0197 (59/2990) 0 * Os_TE_148043 Os_TE_148043 Chr7 10741202 10741201 - TNR3 1536 0.0191 (57/2985) 0 * Os_TE_148044 Os_TE_148020 Chr7 10727736 10727219 + DS-RICE3N 525 0.3057 (902/2951) 1 Intact * Os_TE_148018 Chr7 10726913 10726912 + ENSPM4_OS 11610 0.0071 (21/2976) 0 * * Os_TE_147986 Chr7 10723671 10723670 + RETRO2_LTR 12874 0.7490 (1743/2327) 0 * * Os_TE_147971 Chr7 10720307 10720308 + XIKE 594 0.0189 (56/2956) 0 * Os_TE_147970 Os_TE_147970 Chr7 10720299 10720298 - XIKE 594 0.0199 (59/2959) 0 * Os_TE_147971 Os_TE_147969 Chr7 10719862 10719863 - ORSgTERT00201216 11284 0.0063 (18/2860) 0 * Os_TE_147968 Os_TE_147968 Chr7 10719858 10719857 - RIRE2_LTR 11306 0.0068 (19/2803) 0 * Os_TE_147969 Os_TE_147951 Chr7 10717065 10715896 - MUDRN3_OS 903 0.3191 (929/2911) 1 Intact Os_TE_147949 Os_TE_147949 Chr7 10715896 10717065 - MUDRN3_OS 903 0.3199 (921/2879) 1 Intact Os_TE_147951 Os_TE_147938 Chr7 10713404 10713405 - INDITTO 263 0.0024 (7/2961) 0 * Os_TE_147937 Os_TE_147937 Chr7 10713402 10713401 + INDITTO 263 0.0020 (6/2957) 0 * Os_TE_147938 Os_TE_147936 Chr7 10713317 10713316 - TYPEM 227 0.0294 (87/2958) 0 * Os_TE_147935 Os_TE_147935 Chr7 10713316 10713317 - ORSgTEMT02400246 177 0.0294 (87/2956) 0 * Os_TE_147936 Os_TE_147918 Chr7 10706299 10694875 - ORSgTETN00200001 10994 0.2974 (867/2915) 1 Intact Os_TE_147911 Os_TE_147911 Chr7 10694872 10706299 + CACTA-B 1103 0.3170 (946/2984) 1 Intact Os_TE_147918 Os_TE_147907 Chr7 10691734 10691735 - RETROSAT2LTR 12796 0.6661 (1911/2869) 0 * * Os_TE_147854 Chr7 10671333 10671332 - RIRE3_LTR 12054 0.0207 (61/2953) 0 * * Os_TE_147815 Chr7 10658250 10658251 - RIRE3_LTR 12054 0.0208 (61/2939) 0 * Os_TE_147814 Os_TE_147814 Chr7 10658246 10658245 + RIRE3_LTR 12054 0.0197 (58/2950) 0 * Os_TE_147815 Os_TE_147812 Chr7 10657415 10657416 - TRUNCATOR2_LTR 2904 0.0074 (22/2984) 0 * Os_TE_147811 Os_TE_147811 Chr7 10657411 10657410 + ORSiCMCM00100019 2717 0.0074 (22/2984) 0 * Os_TE_147812 Os_TE_147810 Chr7 10657263 10657262 - TRUNCATOR 2918 0.0010 (3/2980) 0 * Os_TE_147809 Os_TE_147809 Chr7 10657262 10657263 + TRUNCATOR 2918 0.0010 (3/2982) 0 * Os_TE_147810 Os_TE_147807 Chr7 10656926 10656927 + SZ-62LTR 3649 0.0188 (56/2979) 0 * Os_TE_147806 Os_TE_147806 Chr7 10656922 10656921 - SZ-62LTR 3649 0.0205 (61/2978) 0 * Os_TE_147807 Os_TE_147752 Chr7 10646348 10646347 - GYPSY1-LTR_OS 8900 0.0204 (61/2983) 0 * * Os_TE_147751 Chr7 10646204 10646205 - RIRE3_LTR 12054 0.0112 (33/2956) 0 * * Os_TE_147745 Chr7 10643559 10643560 - ORSgTEMT02400179 221 0.0198 (59/2975) 0 * * Os_TE_147731 Chr7 10640136 10640137 - STOWAWAY44_OS 240 0.6910 (2028/2935) 0 * * Os_TE_147727 Chr7 10639636 10639637 + SPMLIKE 10989 0.0086 (25/2922) 0 * Os_TE_147726 Os_TE_147726 Chr7 10639634 10639633 - ORSgTETN00200001 10994 0.0079 (23/2913) 0 * Os_TE_147727 Os_TE_147711 Chr7 10635872 10635873 - NDNA1TNA_OS 334 0.0010 (3/2918) 0 * * Os_TE_147701 Chr7 10633736 10633737 - MuDR4_OS 7610 0.0379 (113/2984) 0 * * Os_TE_147700 Chr7 10633389 10633390 + ORSiTERTOOT00034 791 0.0007 (2/2997) 0 * * Os_TE_147698 Chr7 10632902 10632903 - TRUNCATOR2_LTR 2904 0.0044 (13/2978) 0 * * Os_TE_147696 Chr7 10632706 10632707 - ORSgTERT00201216 11284 0.0007 (2/2948) 0 * Os_TE_147695 Os_TE_147695 Chr7 10632702 10632701 - RIRE2_LTR 11306 0.0010 (3/2954) 0 * Os_TE_147696 Os_TE_147681 Chr7 10629193 10618216 + SPMLIKE 10989 0.3043 (894/2938) 1 Intact Os_TE_147667 Os_TE_147667 Chr7 10618213 10629193 + ORSgTETN00200005 1121 0.3102 (917/2956) 1 Intact Os_TE_147681 Os_TE_147666 Chr7 10618201 10618202 - TRUNCATOR2_LTR 2904 0.0010 (3/2956) 0 * * Os_TE_147533 Chr7 10563187 10563186 + RIREX_LTR 8828 0.0037 (11/2961) 0 * * Os_TE_147526 Chr7 10561326 10561327 - RIRE2_LTR 11306 0.0034 (10/2967) 0 * Os_TE_147525 Os_TE_147525 Chr7 10561322 10561321 + RIRE2_LTR 11306 0.0034 (10/2967) 0 * Os_TE_147526 Os_TE_147522 Chr7 10560633 10560632 + ORSiTERTOOT00028 8600 0.0214 (64/2985) 0 * * Os_TE_147494 Chr7 10551223 10551224 - TRUNCATOR2_LTR 2904 0.0007 (2/2959) 0 * * Os_TE_147492 Chr7 10550143 10550144 - RIRE3A_LTR 10580 0.0010 (3/2956) 0 * * Os_TE_147484 Chr7 10547543 10547542 + TRUNCATOR2_LTR 2904 0.0061 (18/2957) 0 * * Os_TE_147483 Chr7 10547325 10547326 + ORSiTERTOOT00028 8600 0.0003 (1/2944) 0 * * Os_TE_147403 Chr7 10517584 10517583 + TRUNCATOR 2918 0.6548 (1863/2845) 0 * Os_TE_147402 Os_TE_147402 Chr7 10517582 10517583 - TRUNCATOR 2918 0.6519 (1845/2830) 0 * Os_TE_147403 Os_TE_147365 Chr7 10502161 10502162 - COPIA2-LTR_OS 6433 0.0003 (1/2892) 0 * Os_TE_147364 Os_TE_147364 Chr7 10502157 10502156 + COPIA2-LTR_OS 6433 0.0003 (1/2893) 0 * Os_TE_147365 Os_TE_147357 Chr7 10498924 10498925 - TRUNCATOR2_LTR 2904 0.0011 (3/2766) 0 * * Os_TE_147272 Chr7 10474396 10474397 + RIRE3_LTR 12054 0.0038 (4/1056) 0 * Os_TE_147271 Os_TE_147271 Chr7 10474392 10474391 - RIRE3_LTR 12054 0.0014 (4/2907) 0 * Os_TE_147272 Os_TE_147270 Chr7 10474385 10474386 - SZ-62LTR 3649 0.6524 (1881/2883) 0 * Os_TE_147269 Os_TE_147269 Chr7 10474381 10474380 + SZ-62LTR 3649 0.6491 (1876/2890) 0 * Os_TE_147270 Os_TE_147174 Chr7 10436584 10436585 - ORSgTETN00200001 10994 0.0297 (84/2824) 0 * Os_TE_147173 Os_TE_147173 Chr7 10436582 10436581 + SPMLIKE 10989 0.0276 (78/2824) 0 * Os_TE_147174 Os_TE_147169 Chr7 10434910 10434911 + RIREX_LTR 8828 0.0007 (2/2875) 0 * * Os_TE_147079 Chr7 10376727 10391934 - RIRE3_LTR 12054 0.3276 (928/2833) 1 Intact * Os_TE_147077 Chr7 10376340 10376339 + RIREX_LTR 8828 0.0075 (21/2801) 0 * * Os_TE_147073 Chr7 10374593 10374594 - TRUNCATOR2_LTR 2904 0.0014 (4/2796) 0 * Os_TE_147072 Os_TE_147072 Chr7 10374589 10374588 + ORSiCMCM00100019 2717 0.0014 (4/2792) 0 * Os_TE_147073 Os_TE_147065 Chr7 10371196 10371197 - RIRE3_LTR 12054 0.0301 (86/2859) 0 * * Os_TE_147048 Chr7 10359505 10359506 - TRUNCATOR2_LTR 2904 0.0031 (9/2858) 0 * * Os_TE_147046 Chr7 10357730 10357731 - TRUNCATOR2_LTR 2904 0.5616 (1637/2915) 0 * Os_TE_147045 Os_TE_147045 Chr7 10357727 10357726 + TRUNCATOR2_LTR 2904 0.5562 (1612/2898) 0 * Os_TE_147046 Os_TE_147033 Chr7 10355224 10355223 + RIRE2_LTR 11306 0.0076 (22/2886) 0 * * Os_TE_147017 Chr7 10341187 10352643 + SPMLIKE 10989 0.3387 (891/2631) 1 Intact * Os_TE_147003 Chr7 10338511 10338512 + ENSPM3_OS 10837 0.0085 (9/1062) 0 * Os_TE_147002 Os_TE_147002 Chr7 10338509 10338508 - ENSPM3_OS 10837 0.0085 (9/1064) 0 * Os_TE_147003 Os_TE_147000 Chr7 10337896 10337897 - GYPSY1-LTR_OS 8900 0.0199 (21/1056) 0 * Os_TE_146999 Os_TE_146999 Chr7 10337892 10337891 + GYPSY-B_LTR 7068 0.0161 (17/1056) 0 * Os_TE_147000 Os_TE_146997 Chr7 10337751 10337750 - RIRE3A_LTR 10580 0.0083 (9/1083) 0 * * Os_TE_146993 Chr7 10337249 10337248 + RIREX_LTR 8828 0.0019 (2/1062) 0 * * Os_TE_146986 Chr7 10334209 10334210 - RIREX_LTR 8828 0.0369 (40/1083) 0 * * Os_TE_146985 Chr7 10333870 10333869 - RIRE3_LTR 12054 0.0085 (9/1065) 0 * * Os_TE_146983 Chr7 10332726 10332727 - RIRE2_LTR 11306 0.0129 (14/1084) 0 * Os_TE_146982 Os_TE_146982 Chr7 10332722 10332721 - ORSgTERT00201216 11284 0.0128 (14/1094) 0 * Os_TE_146983 Os_TE_146979 Chr7 10331656 10332051 + OSTE9 421 0.6436 (1040/1616) 1 Intact * Os_TE_146977 Chr7 10331300 10331301 - DNAUN1_OS 408 0.0028 (3/1079) 0 * * Os_TE_146976 Chr7 10331133 10331134 - COPIA2-LTR_OS 6433 0.0092 (10/1087) 0 * Os_TE_146975 Os_TE_146975 Chr7 10331129 10331128 + COPIA2-LTR_OS 6433 0.0085 (9/1056) 0 * Os_TE_146976 Os_TE_146974 Chr7 10330236 10330237 - RIREX_LTR 8828 0.0093 (10/1072) 0 * Os_TE_146973 Os_TE_146973 Chr7 10330232 10330231 + RIREX_LTR 8828 0.0102 (11/1074) 0 * Os_TE_146974 Os_TE_146950 Chr7 10317230 10317229 - RETROSAT2LTR 12796 0.0098 (28/2849) 0 * * Os_TE_146938 Chr7 10310877 10310878 - ORSgTETN00200001 10994 0.0066 (19/2860) 0 * Os_TE_146937 Os_TE_146937 Chr7 10310875 10310874 + SPMLIKE 10989 0.0080 (23/2866) 0 * Os_TE_146938 Os_TE_146924 Chr7 10305564 10305563 - ORSgTEMT01601208 238 0.0065 (19/2919) 0 * * Os_TE_146922 Chr7 10304367 10304368 + RETRO2A_LTR 12895 0.0089 (26/2922) 0 * Os_TE_146921 Os_TE_146921 Chr7 10304363 10304362 - RETRO1_LTR 8314 0.0089 (26/2922) 0 * Os_TE_146922 Os_TE_146920 Chr7 10303583 10303582 + ORSgTEMT01700637 157 0.0065 (19/2929) 0 * Os_TE_146919 Os_TE_146919 Chr7 10303582 10303583 + STOWAWAY1_OS 149 0.0061 (18/2928) 0 * Os_TE_146920 Os_TE_146912 Chr7 10302455 10302454 - DS-RICE4N 715 0.0010 (3/2919) 0 * * Os_TE_146911 Chr7 10302412 10302413 - COPI2_LTR 4733 0.0007 (2/2893) 0 * * Os_TE_146902 Chr7 10299931 10299932 - COPI2_LTR 4733 0.0007 (2/2896) 0 * Os_TE_146901 Os_TE_146901 Chr7 10299927 10299926 + COPI2_LTR 4733 0.0003 (1/2894) 0 * Os_TE_146902 Os_TE_146856 Chr7 10284184 10284185 + RETRO2A_LTR 12895 0.0175 (51/2917) 0 * Os_TE_146855 Os_TE_146855 Chr7 10284180 10284179 - RETRO2_LTR 12874 0.0185 (54/2918) 0 * Os_TE_146856 Os_TE_146852 Chr7 10281736 10281737 - INDITTO 263 0.0024 (7/2959) 0 * Os_TE_146851 Os_TE_146851 Chr7 10281734 10281733 + INDITTO 263 0.0024 (7/2961) 0 * Os_TE_146852 Os_TE_146850 Chr7 10281695 10281696 + MPING 430 0.0003 (1/2961) 0 * Os_TE_146849 Os_TE_146849 Chr7 10281693 10281692 - MPING 430 0.0003 (1/2956) 0 * Os_TE_146850 Os_TE_146843 Chr7 10279987 10279988 - TRUNCATOR2_LTR 2904 0.0003 (1/2988) 0 * * Os_TE_146803 Chr7 10268176 10268177 + ORSiTERTOOT00226 792 0.0013 (4/2992) 0 * * Os_TE_146782 Chr7 10259819 10259820 + RETRO1_LTR 8314 0.0180 (54/2992) 0 * Os_TE_146781 Os_TE_146781 Chr7 10259815 10259814 - RETRO2A_LTR 12895 0.0174 (52/2992) 0 * Os_TE_146782 Os_TE_146779 Chr7 10258807 10258806 - RETRO2_LTR 12874 0.0010 (3/2991) 0 * * Os_TE_146749 Chr7 10246525 10235813 + SPMLIKE 10989 0.3391 (962/2837) 1 Intact Os_TE_146741 Os_TE_146741 Chr7 10235813 10246525 - ORSgTETN00200001 10994 0.3187 (918/2880) 1 Intact Os_TE_146749 Os_TE_146709 Chr7 10225146 10225147 - COPIA2-LTR_OS 6433 0.0003 (1/2924) 0 * * Os_TE_146707 Chr7 10224651 10224652 + ORSiTERTOOT00226 792 0.0003 (1/2962) 0 * Os_TE_146706 Os_TE_146706 Chr7 10224647 10224646 + ORSiTERTOOT00226 792 0.0003 (1/2971) 0 * Os_TE_146707 Os_TE_146699 Chr7 10223324 10223170 - OsSN3 183 0.3492 (1027/2941) 1 Intact Os_TE_146698 Os_TE_146698 Chr7 10223171 10223323 + CASINE 174 0.3521 (1047/2974) 1 Intact Os_TE_146699 Os_TE_146694 Chr7 10221717 10221716 - RETROSAT2LTR 12796 0.0474 (141/2976) 0 * * Os_TE_146693 Chr7 10221711 10221712 + TRUNCATOR 2918 0.0003 (1/2975) 0 * * Os_TE_146689 Chr7 10218048 10218049 + TRUNCATOR2_LTR 2904 0.0164 (49/2981) 0 * Os_TE_146688 Os_TE_146688 Chr7 10218044 10218043 - TRUNCATOR2_LTR 2904 0.0385 (55/1429) 0 * Os_TE_146689 Os_TE_146677 Chr7 10216277 10216278 - SZ-40LTR 2465 0.0017 (5/2996) 0 * Os_TE_146676 Os_TE_146676 Chr7 10216273 10216272 - GYPSY-A_LTR 8951 0.0020 (6/2996) 0 * Os_TE_146677 Os_TE_146674 Chr7 10215413 10215414 + ORSiTERTOOT00291 11421 0.6634 (1981/2986) 0 * Os_TE_146673 Os_TE_146673 Chr7 10215409 10215408 - SZ-7A_LTR 11400 0.6603 (1967/2979) 0 * Os_TE_146674 Os_TE_146661 Chr7 10207028 10207029 - SC-8_LTR 4951 0.0003 (1/2988) 0 * Os_TE_146660 Os_TE_146660 Chr7 10207024 10207023 + SC-8_LTR 4951 0.0003 (1/2991) 0 * Os_TE_146661 Os_TE_146609 Chr7 10161122 10161123 + OLO24B 335 0.0168 (50/2974) 0 * * Os_TE_146608 Chr7 10160832 10160833 - ORSiTERT00100062 5674 0.0057 (17/2987) 0 * Os_TE_146607 Os_TE_146607 Chr7 10160828 10160827 + OSTONOR1_LTR 6440 0.0060 (18/2981) 0 * Os_TE_146608 Os_TE_146604 Chr7 10159387 10159388 - COPI2_LTR 4733 0.0003 (1/2930) 0 * Os_TE_146603 Os_TE_146603 Chr7 10159383 10159382 + COPI2_LTR 4733 0.0003 (1/2925) 0 * Os_TE_146604 Os_TE_146597 Chr7 10152915 10152916 - RIRE3_LTR 12054 0.0010 (3/2987) 0 * Os_TE_146596 Os_TE_146596 Chr7 10152911 10152910 + RIRE3_LTR 12054 0.0010 (3/2988) 0 * Os_TE_146597 Os_TE_146573 Chr7 10145925 10145926 - COPI2_LTR 4733 0.0003 (1/2937) 0 * * Os_TE_146560 Chr7 10140507 10140508 + SZ-30_LTR 6377 0.0040 (12/2975) 0 * Os_TE_146559 Os_TE_146559 Chr7 10140503 10140502 - SZ-30_LTR 6377 0.0040 (12/2974) 0 * Os_TE_146560 Os_TE_146558 Chr7 10140145 10140146 - SZ-35LTR 3853 0.5471 (1633/2985) 0 * Os_TE_146557 Os_TE_146557 Chr7 10140141 10140140 + RETROSAT4_LTR 13504 0.5357 (1575/2940) 0 * Os_TE_146558 Os_TE_146556 Chr7 10139801 10139802 - ORSiTERT00200082 1437 0.0003 (1/2991) 0 * * Os_TE_146548 Chr7 10138488 10138489 + RIREX_LTR 8828 0.0037 (11/2987) 0 * Os_TE_146547 Os_TE_146547 Chr7 10138484 10138483 - RIRE2_LTR 11306 0.0044 (13/2984) 0 * Os_TE_146548 Os_TE_146544 Chr7 10136028 10136029 - SC-3_LTR 5748 0.0013 (4/2983) 0 * * Os_TE_146542 Chr7 10133822 10133823 - SC-3_LTR 5748 0.0003 (1/2965) 0 * Os_TE_146541 Os_TE_146541 Chr7 10133818 10133817 + ORSiTERTOOT00296 5553 0.0003 (1/2949) 0 * Os_TE_146542 Os_TE_146538 Chr7 10131096 10131097 - ORSiTERTOOT00188 2195 0.0003 (1/2952) 0 * * Os_TE_146536 Chr7 10129833 10129834 - SC-3_LTR 5748 0.5531 (1620/2929) 0 * Os_TE_146535 Os_TE_146535 Chr7 10129829 10129828 + ORSiTERTOOT00296 5553 0.5551 (1632/2940) 0 * Os_TE_146536 Os_TE_146529 Chr7 10127844 10127845 + ORSgTEMT01701060 147 0.0010 (3/2935) 0 * * Os_TE_146527 Chr7 10126083 10126084 + CACTA-B 1103 0.0096 (25/2614) 0 * * Os_TE_146503 Chr7 10110779 10110780 - ORSiTERT00100062 5674 0.0017 (5/2997) 0 * Os_TE_146502 Os_TE_146502 Chr7 10110775 10110774 + OSTONOR1_LTR 6440 0.0017 (5/2997) 0 * Os_TE_146503 Os_TE_146475 Chr7 10101121 10101122 - LINE-7_OS 7090 0.0168 (49/2925) 0 * * Os_TE_146468 Chr7 10092404 10092405 + OSTE20 496 0.0090 (27/2986) 0 * Os_TE_146467 Os_TE_146467 Chr7 10092400 10092399 - OSTE20 496 0.0084 (25/2987) 0 * Os_TE_146468 Os_TE_146462 Chr7 10088454 10088453 + OSR3_LTR 5201 0.0003 (1/2892) 0 * * Os_TE_146453 Chr7 10081739 10081740 - RETROFIT_LTR 4866 0.0004 (1/2839) 0 * Os_TE_146452 Os_TE_146452 Chr7 10081736 10081735 + ORSiTERTOOT00033 4884 0.0004 (1/2830) 0 * Os_TE_146453 Os_TE_146449 Chr7 10080454 10069375 + SPMLIKE 10989 0.2557 (763/2984) 1 Intact Os_TE_146446 Os_TE_146446 Chr7 10069375 10080390 - ORSgTETN00200001 10994 0.2525 (748/2962) 1 Intact Os_TE_146449 Os_TE_146441 Chr7 10069000 10068999 - RIREX_LTR 8828 0.0037 (11/2995) 0 * * Os_TE_146436 Chr7 10065410 10065411 + ORSiTERTOOT00296 5553 0.0003 (1/2997) 0 * Os_TE_146435 Os_TE_146435 Chr7 10065406 10065405 - SC-3_LTR 5748 0.0003 (1/2997) 0 * Os_TE_146436 Os_TE_146429 Chr7 10062063 10062062 + ORSiCMCM00100019 2717 0.0102 (30/2932) 0 * * Os_TE_146427 Chr7 10061501 10061502 - RETRO1_LTR 8314 0.0003 (1/2916) 0 * Os_TE_146426 Os_TE_146426 Chr7 10061497 10061496 + RETRO2A_LTR 12895 0.0003 (1/2911) 0 * Os_TE_146427 Os_TE_146357 Chr7 10041329 10041328 - SZ-22_LTR 4403 0.0007 (1/1438) 0 * * Os_TE_146335 Chr7 10032247 10032248 + SPMLIKE 10989 0.0074 (22/2975) 0 * * Os_TE_146333 Chr7 10031619 10031620 + STOWAWAY9_OS 235 0.0013 (4/2966) 0 * * Os_TE_146331 Chr7 10031568 10031569 - ORSgTETN00200001 10994 0.0003 (1/2979) 0 * Os_TE_146330 Os_TE_146330 Chr7 10031566 10031565 + SPMLIKE 10989 0.0003 (1/2979) 0 * Os_TE_146331 Os_TE_146329 Chr7 10030924 10030925 + SPMLIKE 10989 0.0222 (64/2887) 0 * Os_TE_146328 Os_TE_146328 Chr7 10030922 10030921 - ORSgTETN00200001 10994 0.0062 (18/2917) 0 * Os_TE_146329 Os_TE_146319 Chr7 10030328 10030573 + ORSgTEMT00901844 250 0.6846 (1428/2086) 1 Intact Os_TE_146318 Os_TE_146318 Chr7 10030300 10030161 - ORSgTEMT01702029 126 0.8101 (1429/1764) 1 Intact Os_TE_146319 Os_TE_146315 Chr7 10029854 10023397 - COPIA2-LTR_OS 6433 0.2706 (809/2990) 1 Intact Os_TE_146312 Os_TE_146312 Chr7 10023397 10029854 + COPIA2-LTR_OS 6433 0.2687 (803/2988) 1 Intact Os_TE_146315 Os_TE_146306 Chr7 10020942 10020943 + TYPEU4 402 0.0003 (1/2954) 0 * * Os_TE_146283 Chr7 10008453 10008452 - ORSgTETN00200001 10994 0.5379 (1588/2952) 0 * Os_TE_146282 Os_TE_146282 Chr7 10008452 10008453 + CACTA-B 1103 0.5376 (1516/2820) 0 * Os_TE_146283 Os_TE_146272 Chr7 10007922 10007921 + OLO24 345 0.5400 (1600/2963) 0 * * Os_TE_146263 Chr7 10005455 10005456 + STOWAWAY50_OS 174 0.0013 (4/2992) 0 * * Os_TE_146259 Chr7 10002887 10002888 + OSTE33 1012 0.5753 (1646/2861) 0 * Os_TE_146258 Os_TE_146258 Chr7 10002878 10002877 + OSTE33 1012 0.5769 (1666/2888) 0 * Os_TE_146259 Os_TE_146254 Chr7 10000894 10000895 - ORSiTERTOOT00274 4749 0.0017 (5/2992) 0 * * Os_TE_146250 Chr7 10000241 10000240 + TRUNCATOR 2918 0.0007 (2/2990) 0 * Os_TE_146249 Os_TE_146249 Chr7 10000240 10000241 - TRUNCATOR 2918 0.0007 (2/2989) 0 * Os_TE_146250 Os_TE_146243 Chr7 9994866 9994865 - TRUNCATOR 2918 0.0416 (124/2980) 0 * * Os_TE_146241 Chr7 9994218 9994219 - ORSgTETNOOT01243 137 0.0017 (5/2984) 0 * * Os_TE_146239 Chr7 9993201 9993202 + RETROSAT2LTR 12796 0.0020 (6/2998) 0 * Os_TE_146238 Os_TE_146238 Chr7 9993197 9993196 - RETROSAT3_LTR 11537 0.0020 (6/2996) 0 * Os_TE_146239 Os_TE_146223 Chr7 9988052 9988053 - TAMI2 254 0.0967 (288/2977) 0 * * Os_TE_146218 Chr7 9984518 9984299 - TOURIST-XV 239 0.8990 (2581/2871) 1 Intact * Os_TE_146210 Chr7 9981243 9981244 + INDITTO 263 0.0498 (130/2611) 0 * * Os_TE_146205 Chr7 9981057 9981056 - STOWAWAY50_OS 174 0.0011 (3/2726) 0 * * Os_TE_146204 Chr7 9981051 9981050 - ORSgTEMT00500351 146 0.0910 (254/2790) 0 * Os_TE_146203 Os_TE_146203 Chr7 9981047 9981048 - ORSgTEMT00500439 153 0.1060 (298/2810) 0 * Os_TE_146204 Os_TE_146195 Chr7 9980448 9980449 + ORSgTEMT01602181 239 0.0904 (261/2887) 0 * * Os_TE_146181 Chr7 9970943 9970942 - RIREX_LTR 8828 0.0004 (1/2770) 0 * * Os_TE_146161 Chr7 9964038 9964037 + ORSgTEMT00700017 386 0.0004 (1/2721) 0 * * Os_TE_146159 Chr7 9963250 9963251 + INDITTO 263 0.0492 (131/2662) 0 * * Os_TE_146135 Chr7 9958495 9958496 - ORSgTETN00200001 10994 0.0004 (1/2729) 0 * Os_TE_146134 Os_TE_146134 Chr7 9958493 9958492 + SPMLIKE 10989 0.0004 (1/2730) 0 * Os_TE_146135 Os_TE_146128 Chr7 9957183 9955741 - DS-RICE2N 613 0.8741 (2368/2709) 1 Intact * Os_TE_146063 Chr7 9937657 9937656 - TRUNCATOR 2918 0.0016 (4/2464) 0 * * Os_TE_145945 Chr7 9880371 9880372 + AMYLTP 383 0.0733 (197/2688) 0 * * Os_TE_145942 Chr7 9880051 9880052 - RIREX_LTR 8828 0.0095 (28/2939) 0 * Os_TE_145941 Os_TE_145941 Chr7 9880047 9880046 + RIREX_LTR 8828 0.0087 (26/2987) 0 * Os_TE_145942 Os_TE_145926 Chr7 9876474 9865477 - ORSgTETN00200001 10994 0.2465 (695/2820) 1 Intact * Os_TE_145910 Chr7 9856610 9856609 - ORSgTEMT02400179 221 0.6268 (1752/2795) 0 * Os_TE_145909 Os_TE_145909 Chr7 9856607 9856608 + ORSgTEMT02400034 225 0.6214 (1733/2789) 0 * Os_TE_145910 Os_TE_145908 Chr7 9855533 9855532 - ENSPM4_OS 11610 0.0096 (27/2819) 0 * * Os_TE_145906 Chr7 9853572 9853573 + RIREX_LTR 8828 0.0011 (3/2723) 0 * Os_TE_145905 Os_TE_145905 Chr7 9853568 9853567 - RIREX_LTR 8828 0.0011 (3/2752) 0 * Os_TE_145906 Os_TE_145856 Chr7 9838220 9853041 - TRUNCATOR 2918 0.2572 (699/2718) 1 Intact * Os_TE_145842 Chr7 9834345 9834344 + TRUNCATOR 2918 0.0070 (19/2709) 0 * Os_TE_145841 Os_TE_145841 Chr7 9834344 9834345 - TRUNCATOR 2918 0.0070 (19/2704) 0 * Os_TE_145842 Os_TE_145825 Chr7 9830427 9830428 + SC-4_LTR 5218 0.0004 (1/2740) 0 * * Os_TE_145599 Chr7 9739539 9739540 + ORSiTERTOOT00034 791 0.0004 (1/2731) 0 * * Os_TE_145237 Chr7 9613974 9613973 - COPIA2-LTR_OS 6433 0.0009 (1/1131) 0 * * Os_TE_145235 Chr7 9613892 9613891 + TRUNCATOR 2918 0.0089 (10/1118) 0 * Os_TE_145234 Os_TE_145234 Chr7 9613891 9613892 - TRUNCATOR 2918 0.0071 (8/1125) 0 * Os_TE_145235 Os_TE_145118 Chr7 9582355 9582356 - RIREX_LTR 8828 0.0091 (27/2970) 0 * Os_TE_145117 Os_TE_145117 Chr7 9582351 9582350 + RIREX_LTR 8828 0.0101 (30/2975) 0 * Os_TE_145118 Os_TE_145111 Chr7 9579992 9579993 - ORSgTETN00200001 10994 0.0081 (24/2966) 0 * * Os_TE_145083 Chr7 9573986 9573987 - TRUNCATOR2_LTR 2904 0.0003 (1/2979) 0 * Os_TE_145082 Os_TE_145082 Chr7 9573982 9573981 + ORSiTERTOOT00028 8600 0.0003 (1/2977) 0 * Os_TE_145083 Os_TE_145071 Chr7 9566908 9566909 - ORSgTERT00201216 11284 0.5418 (1602/2957) 0 * * Os_TE_144980 Chr7 9537203 9537204 + NDNA1TNA_OS 334 0.0889 (264/2968) 0 * * Os_TE_144978 Chr7 9537193 9537194 + ORSgTEMT01601743 239 0.0003 (1/2962) 0 * * Os_TE_144955 Chr7 9531489 9531490 - RIRE2_LTR 11306 0.0493 (147/2980) 0 * Os_TE_144954 Os_TE_144954 Chr7 9531485 9531484 - ORSgTERT00201216 11284 0.0489 (146/2983) 0 * Os_TE_144955 Os_TE_144953 Chr7 9531407 9531406 + NDNA1TNA_OS 334 0.5903 (1756/2975) 0 * Os_TE_144952 Os_TE_144952 Chr7 9531403 9531404 - NDNA1TNA_OS 334 0.5884 (1747/2969) 0 * Os_TE_144953 Os_TE_144950 Chr7 9530775 9530776 - RIREX_LTR 8828 0.0010 (3/2980) 0 * Os_TE_144949 Os_TE_144949 Chr7 9530771 9530770 + RIREX_LTR 8828 0.0010 (3/2977) 0 * Os_TE_144950 Os_TE_144932 Chr7 9526733 9526734 - ORSgTETN00200001 10994 0.0090 (27/2989) 0 * Os_TE_144931 Os_TE_144931 Chr7 9526731 9526730 + SPMLIKE 10989 0.0090 (27/2987) 0 * Os_TE_144932 Os_TE_144919 Chr7 9523945 9523946 + NDNA1TNA_OS 334 0.5485 (1623/2959) 0 * Os_TE_144918 Os_TE_144918 Chr7 9523943 9523942 - NDNA1TNA_OS 334 0.5496 (1633/2971) 0 * Os_TE_144919 Os_TE_144886 Chr7 9505509 9505510 + RETRO2A_LTR 12895 0.0461 (137/2971) 0 * Os_TE_144885 Os_TE_144885 Chr7 9505505 9505504 - RETRO2_LTR 12874 0.0454 (135/2974) 0 * Os_TE_144886 Os_TE_144851 Chr7 9492062 9492063 + RIREX_LTR 8828 0.0044 (13/2949) 0 * Os_TE_144850 Os_TE_144850 Chr7 9492058 9492057 - RIREX_LTR 8828 0.0044 (13/2954) 0 * Os_TE_144851 Os_TE_144849 Chr7 9490994 9490995 - RETROSAT5_LTR 13878 0.0017 (5/2972) 0 * Os_TE_144848 Os_TE_144848 Chr7 9490990 9490989 + SZ-67LTR 1540 0.0017 (5/2976) 0 * Os_TE_144849 Os_TE_144845 Chr7 9490497 9490496 - ORSgTETN00200001 10994 0.0003 (1/2985) 0 * * Os_TE_144839 Chr7 9487973 9487974 + SPMLIKE 10989 0.0003 (1/2992) 0 * * Os_TE_144789 Chr7 9463630 9463629 + JOUZHEN 596 0.0003 (1/2969) 0 * * Os_TE_144774 Chr7 9456931 9456930 + MDR2 6967 0.0084 (25/2971) 0 * * Os_TE_144702 Chr7 9433625 9433626 - ORSgTEMT02400179 221 0.0536 (160/2983) 0 * Os_TE_144701 Os_TE_144701 Chr7 9433624 9433623 - TYPEM 227 0.0527 (157/2979) 0 * Os_TE_144702 Os_TE_144656 Chr7 9416927 9416928 + TELIA 141 0.0003 (1/2978) 0 * * Os_TE_144654 Chr7 9416705 9416704 - NDNA1TNA_OS 334 0.0003 (1/2920) 0 * * Os_TE_144618 Chr7 9403060 9403061 + MUDRN1_OS 764 0.0084 (25/2976) 0 * * Os_TE_144611 Chr7 9400287 9400288 - SC-3_LTR 5748 0.0003 (1/2964) 0 * * Os_TE_144540 Chr7 9363095 9363096 - RETROSAT4_LTR 13504 0.0085 (23/2716) 0 * Os_TE_144539 Os_TE_144539 Chr7 9363091 9363090 + RETROSAT4_LTR 13504 0.0079 (21/2651) 0 * Os_TE_144540 Os_TE_144529 Chr7 9352978 9352977 + ORSgTEMT00101341 314 0.0085 (25/2947) 0 * Os_TE_144528 Os_TE_144528 Chr7 9352973 9352974 + ORSgTEMT00100272 356 0.0078 (23/2944) 0 * Os_TE_144529 Os_TE_144527 Chr7 9352929 9352930 - STOWAWAY44_OS 240 0.0003 (1/2926) 0 * * Os_TE_144517 Chr7 9346403 9346402 + ORSiTERTOOT00296 5553 0.0003 (1/2983) 0 * * Os_TE_144516 Chr7 9344234 9343925 + ORSgTEMT00100531 325 0.2820 (821/2911) 1 Intact Os_TE_144515 Os_TE_144515 Chr7 9343903 9344232 + NDNA1TNA_OS 334 0.2862 (837/2925) 0.83 Intact Os_TE_144516 Os_TE_144513 Chr7 9343786 9343785 - NDNA1TNA_OS 334 0.0071 (21/2951) 0 * * Os_TE_144512 Chr7 9343473 9343472 - DS-RICE2N 613 0.0223 (66/2955) 0 * * Os_TE_144508 Chr7 9342765 9343029 + ORSgTETNOOT02308 270 0.3400 (1005/2956) 1 Intact * Os_TE_144505 Chr7 9342516 9339535 + SEVERIN-2 1952 0.3380 (998/2953) 1 Intact Os_TE_144497 Os_TE_144497 Chr7 9339535 9342497 - SEVERIN-2 1952 0.3350 (994/2967) 1 Intact Os_TE_144505 Os_TE_144489 Chr7 9337265 9337266 + RIREX_LTR 8828 0.0101 (30/2984) 0 * Os_TE_144488 Os_TE_144488 Chr7 9337261 9337260 - RIREX_LTR 8828 0.0104 (31/2986) 0 * Os_TE_144489 Os_TE_144487 Chr7 9337081 9337082 + OSTE15 1168 0.0539 (161/2986) 0 * * Os_TE_144480 Chr7 9334091 9334092 - MuDR3_OS 8604 0.0004 (1/2842) 0 * * Os_TE_144436 Chr7 9313700 9313699 - COPIA2-LTR_OS 6433 0.0003 (1/2983) 0 * * Os_TE_144415 Chr7 9308880 9308881 + AMYLTP 383 0.0017 (5/2974) 0 * * Os_TE_144412 Chr7 9308393 9308392 - ORSgTETN00200001 10994 0.0007 (2/2981) 0 * * Os_TE_144381 Chr7 9287349 9287350 - F524 291 0.6535 (1920/2938) 0 * * Os_TE_144379 Chr7 9286815 9286816 - ORSgTETN00200001 10994 0.0013 (4/2990) 0 * Os_TE_144378 Os_TE_144378 Chr7 9286813 9286812 + SPMLIKE 10989 0.0013 (4/2987) 0 * Os_TE_144379 Os_TE_144377 Chr7 9285747 9285748 + TWIF 586 0.0028 (7/2478) 0 * Os_TE_144376 Os_TE_144376 Chr7 9285740 9285739 - ORSiTETNOOT00156 3648 0.0093 (22/2372) 0 * Os_TE_144377 Os_TE_144357 Chr7 9270253 9270254 - COPIA2-LTR_OS 6433 0.0317 (95/2994) 0 * * Os_TE_144355 Chr7 9270208 9270207 + ORSiTERTOOT00027 10853 0.0027 (8/2981) 0 * * Os_TE_144336 Chr7 9267980 9267981 - ENSPM5_OS 9581 0.0008 (2/2647) 0 * * Os_TE_144323 Chr7 9265785 9265786 - RIREX_LTR 8828 0.0003 (1/2920) 0 * Os_TE_144322 Os_TE_144322 Chr7 9265781 9265780 + RIREX_LTR 8828 0.0003 (1/2924) 0 * Os_TE_144323 Os_TE_144315 Chr7 9262557 9262558 - COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_144314 Os_TE_144314 Chr7 9262553 9262552 + COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_144315 Os_TE_144313 Chr7 9262392 9262391 - ENSPM4_OS 11610 0.0080 (24/2999) 0 * * Os_TE_144312 Chr7 9261592 9261593 + COPI2_LTR 4733 0.0491 (147/2992) 0 * * Os_TE_144310 Chr7 9261103 9261104 - RIREX_LTR 8828 0.0316 (93/2939) 0 * * Os_TE_144306 Chr7 9260139 9260140 - COPIA2-LTR_OS 6433 0.0104 (31/2993) 0 * Os_TE_144305 Os_TE_144305 Chr7 9260135 9260134 + COPIA2-LTR_OS 6433 0.0104 (31/2991) 0 * Os_TE_144306 Os_TE_144283 Chr7 9254225 9254226 - COPI2_LTR 4733 0.0003 (1/2995) 0 * * Os_TE_144245 Chr7 9238549 9238550 - ORSiTERT00200154 9386 0.0486 (145/2985) 0 * Os_TE_144244 Os_TE_144244 Chr7 9238543 9238542 + TRUNCATOR 2918 0.0502 (150/2988) 0 * Os_TE_144245 Os_TE_144243 Chr7 9238542 9238543 - TRUNCATOR 2918 0.0492 (147/2986) 0 * * Os_TE_144168 Chr7 9213478 9213479 - ORSiTERT00200154 9386 0.0054 (16/2986) 0 * * Os_TE_144146 Chr7 9206319 9206318 + TRUNCATOR 2918 0.0495 (145/2927) 0 * * Os_TE_144086 Chr7 9190795 9190794 + COPIA2-LTR_OS 6433 0.0004 (1/2833) 0 * * Os_TE_144081 Chr7 9188752 9188753 + ORSgTETNOOT00032 218 0.0113 (33/2932) 0 * * Os_TE_144066 Chr7 9182536 9182537 + ORSgTEMT00700017 386 0.0021 (6/2897) 0 * * Os_TE_144007 Chr7 9158504 9158505 - RIREX_LTR 8828 0.0063 (18/2870) 0 * Os_TE_144006 Os_TE_144006 Chr7 9158500 9158499 + RIREX_LTR 8828 0.0059 (17/2868) 0 * Os_TE_144007 Os_TE_143897 Chr7 9113286 9113285 - ORSgTEMT02400179 221 0.0003 (1/2989) 0 * * Os_TE_143893 Chr7 9111189 9111188 + SC-8_LTR 4951 0.0003 (1/2982) 0 * * Os_TE_143876 Chr7 9103662 9103661 + SETARIA1 1293 0.0101 (30/2974) 0 * * Os_TE_143853 Chr7 9088211 9088212 - RIREX_LTR 8828 0.0003 (1/2904) 0 * Os_TE_143852 Os_TE_143852 Chr7 9088207 9088206 + RIREX_LTR 8828 0.0003 (1/2892) 0 * Os_TE_143853 Os_TE_143838 Chr7 9081247 9081248 + ENSPM4_OS 11610 0.0087 (26/2989) 0 * * Os_TE_143794 Chr7 9052040 9052039 - TRUNCATOR2_LTR 2904 0.0003 (1/2988) 0 * * Os_TE_143774 Chr7 9043269 9043270 + COPIA2-LTR_OS 6433 0.0003 (1/2976) 0 * Os_TE_143773 Os_TE_143773 Chr7 9043265 9043264 - COPIA2-LTR_OS 6433 0.0003 (1/2976) 0 * Os_TE_143774 Os_TE_143771 Chr7 9042780 9042781 + RETRO2_LTR 12874 0.1003 (299/2981) 0 * Os_TE_143770 Os_TE_143770 Chr7 9042776 9042775 - RETRO2_LTR 12874 0.0992 (295/2974) 0 * Os_TE_143771 Os_TE_143769 Chr7 9042068 9042069 - RETROSAT4_LTR 13504 0.0007 (2/2971) 0 * Os_TE_143768 Os_TE_143768 Chr7 9042064 9042063 + RETROSAT4_LTR 13504 0.0007 (2/2978) 0 * Os_TE_143769 Os_TE_143742 Chr7 9034764 9034763 - SZ-22_LTR 4403 0.0014 (4/2961) 0 * * Os_TE_143731 Chr7 9031497 9031498 - SZ-67LTR 1540 0.0577 (171/2963) 0 * Os_TE_143730 Os_TE_143730 Chr7 9031493 9031492 + SZ-67LTR 1540 0.0570 (169/2964) 0 * Os_TE_143731 Os_TE_143706 Chr7 9022190 9022189 - ORSiTETNOOT00134 607 0.0004 (1/2768) 0 * * Os_TE_143705 Chr7 9021071 9021072 + CLOUD-7 495 0.4708 (1389/2950) 0 * * Os_TE_143662 Chr7 9009529 9009528 - TYPEM 227 0.0092 (27/2950) 0 * Os_TE_143661 Os_TE_143661 Chr7 9009528 9009529 + ORSgTEMT02400245 225 0.0088 (26/2938) 0 * Os_TE_143662 Os_TE_143657 Chr7 9008632 9008633 - HARB-1_OS 5166 0.0003 (1/2876) 0 * * Os_TE_143618 Chr7 8987005 8987004 + ORSgTERT00201027 424 0.6507 (1947/2992) 0 * * Os_TE_143596 Chr7 8972530 8972531 + TRUNCATOR 2918 0.0332 (61/1836) 0 * * Os_TE_143595 Chr7 8972141 8972142 + RIREX_LTR 8828 0.0021 (6/2926) 0 * Os_TE_143594 Os_TE_143594 Chr7 8972137 8972136 - RIREX_LTR 8828 0.0010 (3/2918) 0 * Os_TE_143595 Os_TE_143583 Chr7 8964521 8964522 + ORSgTEMT01900005 333 0.0017 (5/2991) 0 * * Os_TE_143556 Chr7 8947803 8947802 - TRUNCATOR2_LTR 2904 0.0013 (4/2988) 0 * * Os_TE_143528 Chr7 8939812 8939813 - SC-3_LTR 5748 0.0003 (1/2956) 0 * Os_TE_143527 Os_TE_143527 Chr7 8939808 8939807 + ORSiTERTOOT00296 5553 0.0014 (4/2961) 0 * Os_TE_143528 Os_TE_143519 Chr7 8930721 8930722 + SC-3_LTR 5748 0.0070 (21/2990) 0 * Os_TE_143518 Os_TE_143518 Chr7 8930717 8930716 - SC-3_LTR 5748 0.0074 (22/2991) 0 * Os_TE_143519 Os_TE_143516 Chr7 8929190 8929189 - STOWAWAY45_OS 266 0.0144 (42/2912) 0 * Os_TE_143515 Os_TE_143515 Chr7 8929187 8929188 + STOWAWAY45_OS 266 0.0175 (51/2922) 0 * Os_TE_143516 Os_TE_143514 Chr7 8927904 8927905 + ORSiTERTOOT00296 5553 0.0003 (1/2987) 0 * Os_TE_143513 Os_TE_143513 Chr7 8927900 8927899 - SC-3_LTR 5748 0.0003 (1/2983) 0 * Os_TE_143514 Os_TE_143484 Chr7 8915203 8915202 - AMYLTP 383 0.0202 (59/2922) 0 * * Os_TE_143447 Chr7 8896917 8896918 - MuDR3_OS 8604 0.6102 (1705/2794) 0 * Os_TE_143446 Os_TE_143446 Chr7 8896908 8896907 - MuDR3_OS 8604 0.6297 (1842/2925) 0 * Os_TE_143447 Os_TE_143435 Chr7 8892960 8892959 + ORSiTETNOOT00107 906 0.6293 (1840/2924) 0 * Os_TE_143434 Os_TE_143434 Chr7 8892956 8892957 - ORSiTETNOOT00107 906 0.6358 (1892/2976) 0 * Os_TE_143435 Os_TE_143412 Chr7 8885804 8885803 - MPING 430 0.0003 (1/2991) 0 * * Os_TE_143386 Chr7 8875281 8875282 + ORSgTEMT01602119 229 0.0017 (5/2976) 0 * * Os_TE_143379 Chr7 8873688 8873689 + ORSgTEMT01601591 242 0.0008 (2/2497) 0 * * Os_TE_143371 Chr7 8869818 8869819 - COPIA2-LTR_OS 6433 0.0007 (2/2942) 0 * Os_TE_143370 Os_TE_143370 Chr7 8869814 8869813 + COPIA2-LTR_OS 6433 0.0003 (1/2931) 0 * Os_TE_143371 Os_TE_143367 Chr7 8868909 8868910 + OSTE33 1012 0.0007 (2/2989) 0 * Os_TE_143366 Os_TE_143366 Chr7 8868900 8868899 - OSTE33 1012 0.0007 (2/2988) 0 * Os_TE_143367 Os_TE_143351 Chr7 8863430 8863431 + RIREX_LTR 8828 0.0030 (9/2964) 0 * Os_TE_143350 Os_TE_143350 Chr7 8863426 8863425 - RIREX_LTR 8828 0.0027 (8/2973) 0 * Os_TE_143351 Os_TE_143348 Chr7 8863283 8863282 - AMYLTP 383 0.0007 (2/2989) 0 * * Os_TE_143327 Chr7 8857040 8845937 + SPMLIKE 10989 0.3536 (1047/2961) 1 Intact * Os_TE_143322 Chr7 8845276 8845277 + SZ-62LTR 3649 0.0610 (178/2919) 0 * Os_TE_143321 Os_TE_143321 Chr7 8845272 8845271 - SZ-62LTR 3649 0.0662 (194/2931) 0 * Os_TE_143322 Os_TE_143320 Chr7 8844893 8844894 + ORSiCMCM00100019 2717 0.0595 (174/2923) 0 * Os_TE_143319 Os_TE_143319 Chr7 8844889 8844888 - TRUNCATOR2_LTR 2904 0.0579 (169/2918) 0 * Os_TE_143320 Os_TE_143318 Chr7 8844778 8841291 + HATOS1 3488 0.3334 (972/2915) 1 Intact Os_TE_143317 Os_TE_143317 Chr7 8841291 8844778 - HATOS1 3488 0.3293 (956/2903) 1 Intact Os_TE_143318 Os_TE_143310 Chr7 8839875 8839876 - INDITTO 263 0.0003 (1/2888) 0 * Os_TE_143309 Os_TE_143309 Chr7 8839873 8839872 + INDITTO 263 0.0003 (1/2884) 0 * Os_TE_143310 Os_TE_143277 Chr7 8833257 8833258 + HARB-1_OS 5166 0.0034 (10/2957) 0 * Os_TE_143276 Os_TE_143276 Chr7 8833255 8833254 - HARB-1_OS 5166 0.0034 (10/2962) 0 * Os_TE_143277 Os_TE_143160 Chr7 8782748 8782747 + ORSgTEMT00901844 250 0.0014 (4/2953) 0 * Os_TE_143159 Os_TE_143159 Chr7 8782744 8782745 - ORSgTEMT00900099 250 0.0017 (5/2943) 0 * Os_TE_143160 Os_TE_143156 Chr7 8779688 8779689 + TRUNCATOR 2918 0.4757 (1330/2796) 0 * * Os_TE_143131 Chr7 8775808 8775809 - RIREX_LTR 8828 0.0160 (47/2934) 0 * Os_TE_143130 Os_TE_143130 Chr7 8775804 8775803 + RIREX_LTR 8828 0.0163 (48/2941) 0 * Os_TE_143131 Os_TE_143069 Chr7 8752227 8752226 - LTR10_OS 202 0.0043 (12/2822) 0 * * Os_TE_143058 Chr7 8749105 8749104 - RIRE3_LTR 12054 0.0665 (193/2901) 0 * * Os_TE_143035 Chr7 8736414 8736415 - COPIA2-LTR_OS 6433 0.0013 (4/2993) 0 * Os_TE_143034 Os_TE_143034 Chr7 8736410 8736409 + COPIA2-LTR_OS 6433 0.0013 (4/2992) 0 * Os_TE_143035 Os_TE_142995 Chr7 8729114 8729115 - RIRE3_LTR 12054 0.0194 (58/2984) 0 * Os_TE_142994 Os_TE_142994 Chr7 8729110 8729109 + RIRE3_LTR 12054 0.0198 (59/2982) 0 * Os_TE_142995 Os_TE_142993 Chr7 8728834 8728835 + MUDRN5_OS 374 0.0007 (2/2986) 0 * Os_TE_142992 Os_TE_142992 Chr7 8728826 8728825 + MUDRN5_OS 374 0.0007 (2/2984) 0 * Os_TE_142993 Os_TE_142986 Chr7 8725647 8725648 + INDITTO 263 0.2638 (787/2983) 0 * Os_TE_142985 Os_TE_142985 Chr7 8725645 8725644 - INDITTO 263 0.2589 (772/2982) 0 * Os_TE_142986 Os_TE_142980 Chr7 8723510 8723511 - RIREX_LTR 8828 0.0007 (2/2973) 0 * Os_TE_142979 Os_TE_142979 Chr7 8723506 8723505 + RIREX_LTR 8828 0.0007 (2/2965) 0 * Os_TE_142980 Os_TE_142978 Chr7 8723242 8723243 - RIREX_LTR 8828 0.0003 (1/2985) 0 * Os_TE_142977 Os_TE_142977 Chr7 8723238 8723237 + RIREX_LTR 8828 0.0003 (1/2955) 0 * Os_TE_142978 Os_TE_142974 Chr7 8722046 8722045 - CRM-LTR_OS 7749 0.0050 (15/2980) 0 * * Os_TE_142963 Chr7 8714483 8714482 - RETROSAT4_LTR 13504 0.0014 (4/2816) 0 * * Os_TE_142950 Chr7 8709173 8709174 - STOWAWAY51_OS 246 0.0038 (11/2896) 0 * * Os_TE_142938 Chr7 8700525 8689208 + SPMLIKE 10989 0.3453 (896/2595) 1 Intact Os_TE_142935 Os_TE_142935 Chr7 8689208 8700525 - ORSgTETN00200001 10994 0.3409 (918/2693) 1 Intact Os_TE_142938 Os_TE_142931 Chr7 8684174 8684175 - RIREX_LTR 8828 0.0159 (46/2893) 0 * Os_TE_142930 Os_TE_142930 Chr7 8684170 8684169 + RIREX_LTR 8828 0.0166 (48/2895) 0 * Os_TE_142931 Os_TE_142895 Chr7 8668825 8668826 - ORSgTETN00200001 10994 0.0060 (18/2983) 0 * Os_TE_142894 Os_TE_142894 Chr7 8668823 8668822 + SPMLIKE 10989 0.0067 (20/2994) 0 * Os_TE_142895 Os_TE_142892 Chr7 8668682 8668683 + SZ-67LTR 1540 0.0067 (20/2992) 0 * Os_TE_142891 Os_TE_142891 Chr7 8668678 8668677 - SZ-67LTR 1540 0.0067 (20/2991) 0 * Os_TE_142892 Os_TE_142889 Chr7 8665048 8665049 - ORSgTEMT01400011 212 0.0017 (5/2897) 0 * * Os_TE_142844 Chr7 8655003 8655004 + RETRO2_LTR 12874 0.0132 (17/1290) 0 * * Os_TE_142783 Chr7 8626235 8626234 - CACTA-J 1159 0.0003 (1/2997) 0 * * Os_TE_142755 Chr7 8613528 8613529 - TRUNCATOR2_LTR 2904 0.0238 (71/2982) 0 * Os_TE_142754 Os_TE_142754 Chr7 8613524 8613523 + ORSiCMCM00100019 2717 0.0235 (70/2983) 0 * Os_TE_142755 Os_TE_142733 Chr7 8600917 8600918 + RETROSAT2LTR 12796 0.0003 (1/2988) 0 * * Os_TE_142639 Chr7 8560709 8560710 - RIREX_LTR 8828 0.0007 (2/2909) 0 * Os_TE_142638 Os_TE_142638 Chr7 8560705 8560704 + RIREX_LTR 8828 0.0007 (2/2866) 0 * Os_TE_142639 Os_TE_142573 Chr7 8541923 8541924 + INDITTO 263 0.0004 (1/2841) 0 * Os_TE_142572 Os_TE_142572 Chr7 8541921 8541920 - INDITTO 263 0.0004 (1/2834) 0 * Os_TE_142573 Os_TE_142571 Chr7 8541853 8541854 + NDNA1TNA_OS 334 0.0003 (1/2885) 0 * Os_TE_142570 Os_TE_142570 Chr7 8541851 8541850 - NDNA1TNA_OS 334 0.0003 (1/2880) 0 * Os_TE_142571 Os_TE_142475 Chr7 8504843 8504844 - GYPSY-A_LTR 8951 0.0067 (20/2998) 0 * Os_TE_142474 Os_TE_142474 Chr7 8504840 8504839 + GYPSY-A_LTR 8951 0.0060 (18/2998) 0 * Os_TE_142475 Os_TE_142446 Chr7 8489292 8489293 + DS-RICE3N 525 0.0141 (42/2980) 0 * * Os_TE_142438 Chr7 8486973 8486556 + ORSgTEMT00300069 394 0.3442 (1022/2969) 1 Intact Os_TE_142436 Os_TE_142436 Chr7 8486556 8486966 - ORSgTEMT00300141 415 0.3447 (1028/2982) 1 Intact Os_TE_142438 Os_TE_142425 Chr7 8484962 8484963 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_142424 Os_TE_142424 Chr7 8484958 8484957 + COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_142425 Os_TE_142396 Chr7 8465225 8465226 - DITAILA 257 0.0021 (5/2385) 0 * * Os_TE_142394 Chr7 8465093 8465092 - RPO_OS 1983 0.0103 (28/2720) 0 * * Os_TE_142364 Chr7 8454703 8454702 + TRUNCATOR 2918 0.5717 (1686/2949) 0 * Os_TE_142363 Os_TE_142363 Chr7 8454701 8454702 - TRUNCATOR 2918 0.5562 (1599/2875) 0 * Os_TE_142364 Os_TE_142256 Chr7 8414384 8414385 - RETRO2_LTR 12874 0.0110 (32/2902) 0 * Os_TE_142255 Os_TE_142255 Chr7 8414380 8414379 + RETRO2_LTR 12874 0.0110 (32/2901) 0 * Os_TE_142256 Os_TE_142253 Chr7 8413637 8413636 - SZ-33LTR 575 0.0010 (2/2022) 0 * * Os_TE_142240 Chr7 8406775 8406776 + ORSiCMCM00100019 2717 0.5425 (1539/2837) 0 * Os_TE_142239 Os_TE_142239 Chr7 8406771 8406770 - TRUNCATOR2_LTR 2904 0.5688 (1687/2966) 0 * Os_TE_142240 Os_TE_142199 Chr7 8389582 8389583 - RIRE3_LTR 12054 0.0648 (190/2932) 0 * Os_TE_142198 Os_TE_142198 Chr7 8389578 8389577 + RIRE3_LTR 12054 0.0644 (189/2937) 0 * Os_TE_142199 Os_TE_142196 Chr7 8389487 8389486 + ORSiCMCM00100019 2717 0.5707 (1663/2914) 0 * * Os_TE_142173 Chr7 8381969 8379042 - SEVERIN-2 1952 0.3259 (965/2961) 0.91 Intact * Os_TE_142163 Chr7 8377004 8377005 - RETROSAT3_LTR 11537 0.0166 (49/2946) 0 * * Os_TE_142162 Chr7 8376441 8376442 + ORSgTEMT00600272 361 0.0704 (196/2783) 0 * * Os_TE_142089 Chr7 8345243 8345242 - TRUNCATOR 2918 0.0014 (4/2919) 0 * Os_TE_142088 Os_TE_142088 Chr7 8345242 8345243 + TRUNCATOR 2918 0.0018 (5/2801) 0 * Os_TE_142089 Os_TE_142056 Chr7 8333570 8333571 - COPIA2-LTR_OS 6433 0.0017 (5/2995) 0 * Os_TE_142055 Os_TE_142055 Chr7 8333566 8333565 + COPIA2-LTR_OS 6433 0.0013 (4/2986) 0 * Os_TE_142056 Os_TE_142054 Chr7 8333061 8333062 - COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_142053 Os_TE_142053 Chr7 8333057 8333056 + COPIA2-LTR_OS 6433 0.0003 (1/2971) 0 * Os_TE_142054 Os_TE_142038 Chr7 8326597 8326598 - ORSgTEMT00700002 381 0.0241 (70/2903) 0 * * Os_TE_142032 Chr7 8326164 8326163 - INDITTO 263 0.0034 (9/2628) 0 * * Os_TE_142020 Chr7 8314782 8314781 + STOWAWAY21_OS 243 0.0108 (32/2964) 0 * * Os_TE_141948 Chr7 8294294 8294293 - ORSgTEMT00900741 219 0.0104 (31/2982) 0 * Os_TE_141947 Os_TE_141947 Chr7 8294291 8294292 - ORSgTEMT00900417 246 0.0100 (30/2988) 0 * Os_TE_141948 Os_TE_141945 Chr7 8294253 8294252 + ORSgTEMT00901798 232 0.0071 (21/2975) 0 * * Os_TE_141920 Chr7 8291399 8291398 - CLOUD 734 0.0101 (30/2974) 0 * * Os_TE_141916 Chr7 8287795 8287794 + TWIFBIG 3567 0.0003 (1/2984) 0 * * Os_TE_141907 Chr7 8280599 8280600 - SZ-22_LTR 4403 0.0003 (1/2996) 0 * Os_TE_141906 Os_TE_141906 Chr7 8280595 8280594 + ORSiTERTOOT00226 792 0.0003 (1/2992) 0 * Os_TE_141907 Os_TE_141874 Chr7 8248187 8248188 + OSMAR1 5265 0.0051 (15/2960) 0 * * Os_TE_141759 Chr7 8180211 8180210 + CACTA-H 1152 0.0882 (260/2948) 0 * Os_TE_141758 Os_TE_141758 Chr7 8180210 8180211 + ORSgTETN00200005 1121 0.0893 (263/2944) 0 * Os_TE_141759 Os_TE_141757 Chr7 8180012 8180013 + ENSPM6_OS 9815 0.0005 (1/2141) 0 * Os_TE_141756 Os_TE_141756 Chr7 8180010 8180009 - ENSPM5_OS 9581 0.0070 (20/2862) 0 * Os_TE_141757 Os_TE_141754 Chr7 8179361 8179362 + OSTONOR1_LTR 6440 0.0088 (26/2953) 0 * * Os_TE_141751 Chr7 8179075 8179074 - ORSgTEMT00200037 141 0.0214 (64/2990) 0 * * Os_TE_141711 Chr7 8167400 8167401 - ORSgTEMT02400179 221 0.0003 (1/2956) 0 * Os_TE_141710 Os_TE_141710 Chr7 8167399 8167398 - TYPEM 227 0.0003 (1/2963) 0 * Os_TE_141711 Os_TE_141705 Chr7 8165617 8165618 - COPIA2-LTR_OS 6433 0.0008 (2/2546) 0 * Os_TE_141704 Os_TE_141704 Chr7 8165613 8165612 + COPIA2-LTR_OS 6433 0.0008 (2/2550) 0 * Os_TE_141705 Os_TE_141695 Chr7 8162664 8162663 + ORSiTERTOOT00174 2237 0.0003 (1/2992) 0 * * Os_TE_141683 Chr7 8157175 8157176 + TRUNCATOR2_LTR 2904 0.0013 (4/2980) 0 * Os_TE_141682 Os_TE_141682 Chr7 8157171 8157170 - TRUNCATOR2_LTR 2904 0.0013 (4/2984) 0 * Os_TE_141683 Os_TE_141619 Chr7 8136513 8136514 - ORSgTEMT02400179 221 0.0116 (33/2834) 0 * Os_TE_141618 Os_TE_141618 Chr7 8136512 8136511 - TYPEM 227 0.0106 (30/2825) 0 * Os_TE_141619 Os_TE_141602 Chr7 8127941 8127942 + COPIA2-LTR_OS 6433 0.0003 (1/2876) 0 * * Os_TE_141600 Chr7 8127381 8127380 + ORSiCMCM00100019 2717 0.0005 (1/2137) 0 * * Os_TE_141555 Chr7 8109336 8109337 + OSTE20 496 0.0104 (19/1826) 0 * Os_TE_141554 Os_TE_141554 Chr7 8109332 8109331 + OSTE20 496 0.0104 (19/1827) 0 * Os_TE_141555 Os_TE_141490 Chr7 8078939 8078938 + CLOUD-4 520 0.0375 (112/2986) 0 * * Os_TE_141467 Chr7 8070293 8070292 - ORSgTEMT01400022 212 0.0154 (46/2993) 0 * * Os_TE_141464 Chr7 8069787 8069786 + ORSgTETN00200005 1121 0.0017 (5/2949) 0 * * Os_TE_141462 Chr7 8069576 8069575 + TREP220 109 0.0150 (45/2994) 0 * Os_TE_141461 Os_TE_141461 Chr7 8069570 8069571 + TREP220 109 0.0154 (46/2995) 0 * Os_TE_141462 Os_TE_141449 Chr7 8064691 8064692 + CASINE 174 0.6842 (2006/2932) 0 * * Os_TE_141433 Chr7 8060333 8060332 - ORSgTEMT03000017 382 0.0085 (25/2949) 0 * * Os_TE_141429 Chr7 8058806 8058807 - ORSgTEMT03000024 384 0.0154 (46/2991) 0 * * Os_TE_141428 Chr7 8058316 8058315 - CACTA-Q 2268 0.0147 (44/2994) 0 * * Os_TE_141359 Chr7 8037001 8037000 - ORSgTEMT00900760 239 0.0004 (1/2701) 0 * * Os_TE_141358 Chr7 8036968 8036967 + ORSgTEMT00502287 149 0.0153 (41/2673) 0 * * Os_TE_141345 Chr7 8034919 8034920 - TRUNCATOR2_LTR 2904 0.6357 (1888/2970) 0 * Os_TE_141344 Os_TE_141344 Chr7 8034915 8034914 + ORSiCMCM00100019 2717 0.6385 (1904/2982) 0 * Os_TE_141345 Os_TE_141335 Chr7 8032709 8032594 - ORSgTEMT01700277 118 0.8208 (2304/2807) 1 Intact * Os_TE_141237 Chr7 8001611 8001612 + SZ-67LTR 1540 0.6309 (1872/2967) 0 * * Os_TE_141232 Chr7 7999850 7999849 + GYPSY-A_LTR 8951 0.0147 (44/2986) 0 * * Os_TE_141206 Chr7 7988492 7988493 - SZ-33LTR 575 0.0003 (1/2996) 0 * * Os_TE_141201 Chr7 7982332 7982333 - DITTO 244 0.0028 (7/2505) 0 * * Os_TE_141160 Chr7 7967699 7967700 - COPI2_LTR 4733 0.0007 (2/2993) 0 * * Os_TE_141157 Chr7 7965145 7965144 - STOWAWAY51_OS 246 0.0003 (1/2947) 0 * Os_TE_141156 Os_TE_141156 Chr7 7965139 7965140 + STOWAWAY51_OS 246 0.0003 (1/2945) 0 * Os_TE_141157 Os_TE_141151 Chr7 7957631 7957632 - MuDR4_OS 7610 0.0130 (31/2392) 0 * Os_TE_141150 Os_TE_141150 Chr7 7957624 7957623 - MuDR4_OS 7610 0.0110 (33/2987) 0 * Os_TE_141151 Os_TE_141149 Chr7 7957606 7957605 + SEVERIN-2 1952 0.2157 (639/2962) 0 * * Os_TE_141128 Chr7 7945941 7945942 + TRUNCATOR 2918 0.0657 (196/2982) 0 * * Os_TE_141124 Chr7 7943366 7943365 - COPI2_LTR 4733 0.0187 (56/2994) 0 * * Os_TE_141123 Chr7 7943086 7943085 + ORSgTETNOOT00908 242 0.5616 (1677/2986) 0 * * Os_TE_141122 Chr7 7942620 7942621 - OSTE24 683 0.0605 (180/2974) 0 * * Os_TE_141120 Chr7 7941527 7941528 + SZ-55_LTR 10318 0.0017 (5/2991) 0 * Os_TE_141119 Os_TE_141119 Chr7 7941523 7941522 - SZ-55_LTR 10318 0.0017 (5/2992) 0 * Os_TE_141120 Os_TE_141107 Chr7 7937667 7937666 - COPIA2-LTR_OS 6433 0.0003 (1/2971) 0 * * Os_TE_141089 Chr7 7924208 7924209 - RIRE2_LTR 11306 0.0060 (18/2986) 0 * Os_TE_141088 Os_TE_141088 Chr7 7924204 7924203 + RIRE2_LTR 11306 0.0067 (20/2988) 0 * Os_TE_141089 Os_TE_141087 Chr7 7923473 7923472 + TRUNCATOR 2918 0.0203 (60/2957) 0 * * Os_TE_141084 Chr7 7923152 7923153 + RIRE2_LTR 11306 0.0070 (21/2991) 0 * Os_TE_141083 Os_TE_141083 Chr7 7923148 7923147 - RIRE2_LTR 11306 0.0064 (19/2989) 0 * Os_TE_141084 Os_TE_141070 Chr7 7915013 7915014 + ORSgTERT00200961 124 0.0021 (6/2905) 0 * * Os_TE_141069 Chr7 7914078 7914079 - SEVERIN-2 1952 0.0135 (40/2973) 0 * * Os_TE_141057 Chr7 7908759 7908758 + RIRE3_LTR 12054 0.0100 (30/2992) 0 * * Os_TE_141056 Chr7 7907981 7907982 - RIREX_LTR 8828 0.0067 (18/2691) 0 * Os_TE_141055 Os_TE_141055 Chr7 7907977 7907976 + RIREX_LTR 8828 0.0082 (22/2687) 0 * Os_TE_141056 Os_TE_141054 Chr7 7907383 7907384 - RIRE2_LTR 11306 0.0004 (1/2640) 0 * Os_TE_141053 Os_TE_141053 Chr7 7907379 7907378 + RIRE2_LTR 11306 0.0004 (1/2473) 0 * Os_TE_141054 Os_TE_140923 Chr7 7845378 7845379 + MuDR3_OS 8604 0.0654 (196/2995) 0 * Os_TE_140922 Os_TE_140922 Chr7 7845370 7845369 - MuDR3_OS 8604 0.0562 (167/2971) 0 * Os_TE_140923 Os_TE_140900 Chr7 7838908 7838907 - RIREX_LTR 8828 0.0081 (24/2951) 0 * * Os_TE_140891 Chr7 7835276 7835277 + RIREX_LTR 8828 0.0003 (1/2997) 0 * Os_TE_140890 Os_TE_140890 Chr7 7835272 7835271 - RIREX_LTR 8828 0.0003 (1/2994) 0 * Os_TE_140891 Os_TE_140802 Chr7 7790029 7790028 + COPIA1-LTR_OS 9292 0.0003 (1/2972) 0 * * Os_TE_140717 Chr7 7770181 7770180 - GYPSY-A_LTR 8951 0.0004 (1/2675) 0 * * Os_TE_140715 Chr7 7770072 7770073 - TRUNCATOR2_LTR 2904 0.0020 (6/2954) 0 * * Os_TE_140705 Chr7 7766607 7766606 - TRUNCATOR 2918 0.0010 (3/2974) 0 * * Os_TE_140697 Chr7 7763697 7763698 + RIREX_LTR 8828 0.0033 (10/2998) 0 * Os_TE_140696 Os_TE_140696 Chr7 7763693 7763692 - RIREX_LTR 8828 0.0033 (10/2998) 0 * Os_TE_140697 Os_TE_140685 Chr7 7753526 7753525 - TRUNCATOR 2918 0.2092 (618/2954) 0 * Os_TE_140684 Os_TE_140684 Chr7 7753525 7753526 + TRUNCATOR 2918 0.2202 (658/2988) 0 * Os_TE_140685 Os_TE_140683 Chr7 7751724 7751723 + TWIFB1 3737 0.0004 (1/2703) 0 * * Os_TE_140665 Chr7 7742710 7742709 + ORSgTEMT00600272 361 0.0017 (5/2973) 0 * * Os_TE_140662 Chr7 7739130 7739129 - TRUNCATOR 2918 0.2159 (643/2978) 0 * Os_TE_140661 Os_TE_140661 Chr7 7739129 7739130 + TRUNCATOR 2918 0.2221 (664/2990) 0 * Os_TE_140662 Os_TE_140637 Chr7 7733616 7733615 - TRUNCATOR 2918 0.6428 (1868/2906) 0 * * Os_TE_140631 Chr7 7733169 7733168 - RIRE3_LTR 12054 0.0751 (100/1331) 0 * * Os_TE_140629 Chr7 7732736 7732735 + ORSiCMCM00100019 2717 0.1204 (151/1254) 0 * * Os_TE_140628 Chr7 7731807 7731808 + TRUNCATOR2_LTR 2904 0.0081 (24/2980) 0 * Os_TE_140627 Os_TE_140627 Chr7 7731803 7731802 - TRUNCATOR2_LTR 2904 0.0091 (27/2983) 0 * Os_TE_140628 Os_TE_140589 Chr7 7710039 7710040 - COPIA2-LTR_OS 6433 0.0003 (1/2976) 0 * * Os_TE_140580 Chr7 7707503 7686757 - ENSPM2_OS 10580 0.4873 (1441/2957) 1 Intact * Os_TE_140542 Chr7 7686061 7686062 - RIREX_LTR 8828 0.0630 (136/2158) 0 * * Os_TE_140531 Chr7 7683475 7674466 + MuDR3_OS 8604 0.3183 (908/2853) 1 Intact * Os_TE_140489 Chr7 7649142 7649143 - INDITTO 263 0.0017 (5/2963) 0 * Os_TE_140488 Os_TE_140488 Chr7 7649140 7649139 + INDITTO 263 0.0017 (5/2986) 0 * Os_TE_140489 Os_TE_140487 Chr7 7649098 7649097 + TRUNCATOR 2918 0.6418 (1917/2987) 0 * Os_TE_140486 Os_TE_140486 Chr7 7649097 7649098 - TRUNCATOR 2918 0.6308 (1871/2966) 0 * Os_TE_140487 Os_TE_140466 Chr7 7639221 7639220 - ORSgTEMT02400179 221 0.0020 (6/2973) 0 * * Os_TE_140419 Chr7 7612386 7612387 + RIRE3A_LTR 10580 0.5187 (1542/2973) 0 * * Os_TE_140410 Chr7 7609109 7609110 + COPIA2-LTR_OS 6433 0.0007 (2/2953) 0 * Os_TE_140409 Os_TE_140409 Chr7 7609105 7609104 - COPIA2-LTR_OS 6433 0.0010 (3/2953) 0 * Os_TE_140410 Os_TE_140392 Chr7 7606075 7606076 + COPIA2-LTR_OS 6433 0.0007 (2/2993) 0 * Os_TE_140391 Os_TE_140391 Chr7 7606071 7606070 - COPIA2-LTR_OS 6433 0.0010 (3/2993) 0 * Os_TE_140392 Os_TE_140284 Chr7 7557704 7557705 + DS-RICE3N 525 0.0004 (1/2742) 0 * * Os_TE_140282 Chr7 7557318 7557319 + ORSgTEMT00500095 150 0.0022 (6/2773) 0 * Os_TE_140281 Os_TE_140281 Chr7 7557300 7557299 + NDNA1TNA_OS 334 0.0638 (188/2949) 0 * Os_TE_140282 Os_TE_140280 Chr7 7557299 7557300 + ORSgTEMT00101674 340 0.0635 (187/2945) 0 * * Os_TE_140243 Chr7 7550511 7550510 + STOWAWAY46_OS 154 0.0003 (1/2994) 0 * * Os_TE_140230 Chr7 7545336 7545337 + MPING 430 0.0004 (1/2763) 0 * * Os_TE_140204 Chr7 7535364 7535363 + LTR10_OS 202 0.0003 (1/2922) 0 * * Os_TE_140140 Chr7 7506407 7506408 + RIRE3_LTR 12054 0.0022 (6/2781) 0 * Os_TE_140139 Os_TE_140139 Chr7 7506403 7506402 - RIRE3_LTR 12054 0.0022 (6/2787) 0 * Os_TE_140140 Os_TE_140130 Chr7 7504703 7504704 - COPIA2-LTR_OS 6433 0.0004 (1/2780) 0 * * Os_TE_140112 Chr7 7500583 7500582 - RIRE2_LTR 11306 0.6049 (1687/2789) 0 * * Os_TE_140110 Chr7 7499947 7499948 + COPIA2-LTR_OS 6433 0.0003 (1/2972) 0 * Os_TE_140109 Os_TE_140109 Chr7 7499943 7499942 - COPIA2-LTR_OS 6433 0.0003 (1/2975) 0 * Os_TE_140110 Os_TE_140051 Chr7 7479488 7479489 + MuDR2_OS 6770 0.0094 (28/2985) 0 * Os_TE_140050 Os_TE_140050 Chr7 7479479 7479478 - MuDR2_OS 6770 0.0110 (33/2990) 0 * Os_TE_140051 Os_TE_139964 Chr7 7421430 7421431 - DS-RICE2N 613 0.0624 (186/2980) 0 * Os_TE_139963 Os_TE_139963 Chr7 7421423 7421422 + DS-RICE2N 613 0.0616 (184/2986) 0 * Os_TE_139964 Os_TE_139961 Chr7 7420569 7420570 - RIREX_LTR 8828 0.0634 (190/2999) 0 * Os_TE_139960 Os_TE_139960 Chr7 7420565 7420564 + RIREX_LTR 8828 0.0627 (188/2999) 0 * Os_TE_139961 Os_TE_139953 Chr7 7418281 7418282 - MuDR4_OS 7610 0.0102 (26/2545) 0 * Os_TE_139952 Os_TE_139952 Chr7 7418274 7418273 - MuDR4_OS 7610 0.0119 (31/2595) 0 * Os_TE_139953 Os_TE_139909 Chr7 7398121 7398122 - ORSgTEMT00600524 364 0.0064 (19/2981) 0 * Os_TE_139908 Os_TE_139908 Chr7 7398119 7398118 + ORSgTEMT00600272 361 0.0050 (15/2978) 0 * Os_TE_139909 Os_TE_139901 Chr7 7394048 7394047 + OLO24 345 0.0178 (16/901) 0 * * Os_TE_139895 Chr7 7390921 7391160 + TREP215 239 0.3794 (848/2235) 1 Intact * Os_TE_139890 Chr7 7388939 7388940 + LTR10_OS 202 0.6211 (1395/2246) 0 * * Os_TE_139884 Chr7 7388234 7388233 + ORSgTEMT01602275 229 0.7093 (1762/2484) 0 * * Os_TE_139879 Chr7 7387647 7387648 - STOWAWAY11_OS 292 0.0095 (8/842) 0 * Os_TE_139878 Os_TE_139878 Chr7 7387641 7387640 + STOWAWAY11_OS 292 0.7017 (1908/2719) 0 * Os_TE_139879 Os_TE_139868 Chr7 7384573 7384572 + OSTE14 885 0.7114 (2083/2928) 0 * * Os_TE_139865 Chr7 7383779 7383780 - TYPEH 309 0.6766 (1550/2291) 0 * Os_TE_139864 Os_TE_139864 Chr7 7383777 7383776 + TYPEH 309 0.7213 (1954/2709) 0 * Os_TE_139865 Os_TE_139859 Chr7 7383304 7383161 - ORSgTEMT00501204 149 0.3101 (881/2841) 1 Intact Os_TE_139857 Os_TE_139857 Chr7 7383152 7383301 - ORSgTEMT00500439 153 0.2960 (874/2953) 1 Intact Os_TE_139859 Os_TE_139856 Chr7 7382624 7382623 - TRUNCATOR2_LTR 2904 0.0003 (1/2948) 0 * * Os_TE_139841 Chr7 7379103 7379104 - SUSU 279 0.6834 (1753/2565) 0 * * Os_TE_139835 Chr7 7368637 7368638 + SPMLIKE 10989 0.5264 (1317/2502) 0 * * Os_TE_139823 Chr7 7366519 7366518 + COPIA2-LTR_OS 6433 0.0003 (1/2925) 0 * * Os_TE_139772 Chr7 7343625 7343626 - ENSPM4_OS 11610 0.0112 (33/2956) 0 * * Os_TE_139748 Chr7 7331417 7331416 + BAJIELTR 4500 0.6617 (1903/2876) 0 * * Os_TE_139741 Chr7 7328388 7328557 + TNR2A 152 0.2999 (879/2931) 1 Intact * Os_TE_139729 Chr7 7324488 7324489 - RIREX_LTR 8828 0.0108 (32/2955) 0 * Os_TE_139728 Os_TE_139728 Chr7 7324484 7324483 + RIREX_LTR 8828 0.0111 (33/2974) 0 * Os_TE_139729 Os_TE_139715 Chr7 7317647 7317648 - ORSgTEMT01701302 154 0.0632 (189/2990) 0 * * Os_TE_139710 Chr7 7314934 7314935 - MuDR4_OS 7610 0.0013 (4/2988) 0 * * Os_TE_139694 Chr7 7308266 7308265 - ORSgTETN00200001 10994 0.0096 (25/2614) 0 * Os_TE_139693 Os_TE_139693 Chr7 7308265 7308266 + CACTA-B 1103 0.0188 (55/2930) 0 * Os_TE_139694 Os_TE_139680 Chr7 7301232 7301233 - ORSgTETNOOT00623 140 0.7042 (2062/2928) 0 * Os_TE_139679 Os_TE_139679 Chr7 7301230 7301229 - ORSgTEMT00501761 127 0.7144 (2134/2987) 0 * Os_TE_139680 Os_TE_139661 Chr7 7294802 7294661 + ORSgTEMT00502193 141 0.6566 (895/1363) 0.5 Intact * Os_TE_139658 Chr7 7294550 7294551 - MERMITE18B 1306 0.4672 (1097/2348) 0 * * Os_TE_139657 Chr7 7294502 7286188 - OSTE15 1168 0.3618 (897/2479) 1 Intact * Os_TE_139650 Chr7 7289122 7289121 - TRUNCATOR 2918 0.0010 (1/964) 0 * * Os_TE_139643 Chr7 7286186 7294498 + OSTE15 1168 0.3011 (770/2557) 1 Intact * Os_TE_139642 Chr7 7286165 7286164 - OSTE15 1168 0.0007 (1/1520) 0 * * Os_TE_139641 Chr7 7286163 7286164 - MuDR3_OS 8604 0.0124 (30/2423) 0 * Os_TE_139640 Os_TE_139640 Chr7 7286154 7286153 - MuDR3_OS 8604 0.0122 (24/1968) 0 * Os_TE_139641 Os_TE_139633 Chr7 7284746 7284506 + ORSgTETNOOT00012 241 0.2925 (873/2985) 1 Intact * Os_TE_139628 Chr7 7277287 7284476 + RIREX_LTR 8828 0.2943 (874/2970) 1 Intact * Os_TE_139626 Chr7 7277109 7277108 - ORSgTEMT00500675 140 0.7092 (2119/2988) 0 * Os_TE_139625 Os_TE_139625 Chr7 7277096 7277097 + ORSgTEMT00502327 143 0.7115 (2114/2971) 0 * Os_TE_139626 Os_TE_139612 Chr7 7269801 7269802 - COPIA2-LTR_OS 6433 0.0003 (1/2971) 0 * Os_TE_139611 Os_TE_139611 Chr7 7269797 7269796 + COPIA2-LTR_OS 6433 0.0003 (1/2963) 0 * Os_TE_139612 Os_TE_139609 Chr7 7268183 7268184 + ORSgTEMT01602119 229 0.0003 (1/2983) 0 * * Os_TE_139605 Chr7 7266825 7266826 - F569 228 0.0020 (6/2990) 0 * Os_TE_139604 Os_TE_139604 Chr7 7266823 7266822 + F569 228 0.0020 (6/2990) 0 * Os_TE_139605 Os_TE_139603 Chr7 7266599 7266600 + RIREX_LTR 8828 0.0003 (1/2993) 0 * Os_TE_139602 Os_TE_139602 Chr7 7266595 7266594 - RIREX_LTR 8828 0.0003 (1/2988) 0 * Os_TE_139603 Os_TE_139599 Chr7 7264952 7264951 - STOWAWAY14_OS 258 0.0009 (1/1065) 0 * * Os_TE_139584 Chr7 7260595 7260596 + MERMITE18E 1528 0.6548 (1954/2984) 0 * * Os_TE_139578 Chr7 7255636 7255635 + COPIA3-LTR_OS 5061 0.5513 (1306/2369) 0 * * Os_TE_139577 Chr7 7255497 7255498 - COPIA3-LTR_OS 5061 0.6538 (1945/2975) 0 * * Os_TE_139575 Chr7 7255160 7255159 - ORSgTEMT01602493 235 0.4105 (738/1798) 0 * Os_TE_139574 Os_TE_139574 Chr7 7255148 7255149 - ORSgTEMT01601696 238 0.0028 (3/1083) 0 * Os_TE_139575 Os_TE_139569 Chr7 7253948 7254186 + ORSgTEMT01602004 234 0.3545 (1056/2979) 1 Intact * Os_TE_139568 Chr7 7253867 7245393 + COPIA1-LTR_OS 9292 0.3542 (1052/2970) 1 Intact Os_TE_139556 Os_TE_139556 Chr7 7245393 7253867 - COPIA1-LTR_OS 9292 0.3493 (1038/2972) 1 Intact Os_TE_139568 Os_TE_139554 Chr7 7244116 7244117 + SEVERIN-2 1952 0.7130 (2079/2916) 0 * * Os_TE_139547 Chr7 7242722 7242723 - HARB-1_OS 5166 0.0004 (1/2720) 0 * Os_TE_139546 Os_TE_139546 Chr7 7242720 7242719 + HARB-1_OS 5166 0.0004 (1/2676) 0 * Os_TE_139547 Os_TE_139545 Chr7 7242653 7242654 + HARB-1_OS 5166 0.0003 (1/2923) 0 * Os_TE_139544 Os_TE_139544 Chr7 7242651 7242650 - HARB-1_OS 5166 0.0003 (1/2908) 0 * Os_TE_139545 Os_TE_139538 Chr7 7237123 7236799 - MUDRN4_OS 332 0.2888 (846/2929) 1 Intact Os_TE_139537 Os_TE_139537 Chr7 7236798 7237119 + MUDRN4_OS 332 0.4307 (758/1760) 1 Intact Os_TE_139538 Os_TE_139528 Chr7 7230881 7230882 + ORSgTEMT01701547 160 0.0017 (5/2976) 0 * * Os_TE_139527 Chr7 7228989 7228990 + COPIA2-LTR_OS 6433 0.0622 (186/2988) 0 * Os_TE_139526 Os_TE_139526 Chr7 7228985 7228984 - COPIA2-LTR_OS 6433 0.0639 (191/2987) 0 * Os_TE_139527 Os_TE_139460 Chr7 7203847 7203848 - RETROSAT2LTR 12796 0.0203 (60/2955) 0 * Os_TE_139459 Os_TE_139459 Chr7 7203845 7203844 + RETROSAT2LTR 12796 0.0177 (52/2937) 0 * Os_TE_139460 Os_TE_139449 Chr7 7202677 7202678 + TWIFBIG 3567 0.0598 (172/2875) 0 * Os_TE_139448 Os_TE_139448 Chr7 7202670 7202669 - ORSiTETNOOT00200 3563 0.0572 (169/2953) 0 * Os_TE_139449 Os_TE_139441 Chr7 7201955 7201954 + TWIFBIG 3567 0.0104 (31/2986) 0 * * Os_TE_139402 Chr7 7190906 7190907 - ORSgTETNOOT00754 253 0.0184 (32/1736) 0 * Os_TE_139401 Os_TE_139401 Chr7 7190904 7190903 + ORSgTETNOOT01834 251 0.0107 (32/2977) 0 * Os_TE_139402 Os_TE_139365 Chr7 7179627 7179626 - ORSgTEMT01602443 235 0.0004 (1/2695) 0 * * Os_TE_139364 Chr7 7178368 7178369 + AMYLTP 383 0.0552 (140/2538) 0 * Os_TE_139363 Os_TE_139363 Chr7 7178360 7178359 - AMYLTP 383 0.0540 (137/2537) 0 * Os_TE_139364 Os_TE_139361 Chr7 7177658 7177659 - TRUNCATOR 2918 0.0004 (1/2310) 0 * * Os_TE_139358 Chr7 7176526 7176527 + ENSPM4_OS 11610 0.0587 (151/2574) 0 * * Os_TE_139340 Chr7 7167711 7167710 + TWIF 586 0.0004 (1/2836) 0 * * Os_TE_139320 Chr7 7151957 7151719 - ORSgTEMT01600152 226 0.8761 (2574/2938) 1 Intact Os_TE_139319 Os_TE_139319 Chr7 7151719 7151957 - ORSgTEMT01601432 239 0.8688 (2530/2912) 1 Intact Os_TE_139320 Os_TE_139318 Chr7 7151676 7151675 - COPI1_LTR 4721 0.1492 (438/2935) 0 * * Os_TE_139314 Chr7 7149791 7149792 + ORSgTEMT00700017 386 0.0507 (151/2981) 0 * * Os_TE_139311 Chr7 7147782 7147783 - SC-3_LTR 5748 0.0003 (1/2995) 0 * Os_TE_139310 Os_TE_139310 Chr7 7147778 7147777 + ORSiTERTOOT00296 5553 0.0003 (1/2994) 0 * Os_TE_139311 Os_TE_139308 Chr7 7146389 7146390 + ORSgTEMT01701591 154 0.1548 (462/2985) 0 * * Os_TE_139305 Chr7 7144790 7144789 - SZ-46LTR 3360 0.1490 (445/2986) 0 * * Os_TE_139301 Chr7 7141294 7141295 - OSLINE1-2 7128 0.0034 (10/2935) 0 * * Os_TE_139300 Chr7 7141149 7141150 + TWIFB1 3737 0.0004 (1/2672) 0 * * Os_TE_139294 Chr7 7130149 7130150 + ORSgTETNOOT00908 242 0.0007 (2/2976) 0 * * Os_TE_139289 Chr7 7127643 7127644 - TYPEM 227 0.0003 (1/2977) 0 * * Os_TE_139278 Chr7 7123605 7123606 + SC-8_LTR 4951 0.0003 (1/2984) 0 * Os_TE_139277 Os_TE_139277 Chr7 7123601 7123600 - SC-8_LTR 4951 0.0003 (1/2990) 0 * Os_TE_139278 Os_TE_139267 Chr7 7119954 7119955 + COPIA2-LTR_OS 6433 0.0010 (3/2971) 0 * Os_TE_139266 Os_TE_139266 Chr7 7119950 7119949 - COPIA2-LTR_OS 6433 0.0010 (3/2963) 0 * Os_TE_139267 Os_TE_139224 Chr7 7104461 7104460 - ORSgTETN00200001 10994 0.1258 (371/2948) 0 * * Os_TE_139209 Chr7 7099828 7099829 + CACTA-H 1152 0.0457 (135/2957) 0 * Os_TE_139208 Os_TE_139208 Chr7 7099826 7099825 - ORSgTETN00200001 10994 0.0472 (140/2964) 0 * Os_TE_139209 Os_TE_139196 Chr7 7092602 7092603 + COPIA2-LTR_OS 6433 0.0007 (2/2996) 0 * Os_TE_139195 Os_TE_139195 Chr7 7092598 7092597 - COPIA2-LTR_OS 6433 0.0007 (2/2997) 0 * Os_TE_139196 Os_TE_139168 Chr7 7086650 7086651 - RIREX_LTR 8828 0.0004 (1/2503) 0 * Os_TE_139167 Os_TE_139167 Chr7 7086646 7086645 + RIREX_LTR 8828 0.0004 (1/2510) 0 * Os_TE_139168 Os_TE_139166 Chr7 7086517 7086518 - COPI2_LTR 4733 0.5611 (1442/2570) 0 * Os_TE_139165 Os_TE_139165 Chr7 7086513 7086512 + COPI2_LTR 4733 0.5573 (1430/2566) 0 * Os_TE_139166 Os_TE_139130 Chr7 7065133 7065134 + SEVERIN-2 1952 0.0007 (2/2800) 0 * * Os_TE_139123 Chr7 7058176 7058175 + RIRE3A_LTR 10580 0.0007 (2/2980) 0 * * Os_TE_139120 Chr7 7057918 7057917 - RETROSAT2LTR 12796 0.1367 (408/2985) 0 * * Os_TE_139119 Chr7 7057604 7057605 + SPMLIKE 10989 0.0003 (1/2991) 0 * Os_TE_139118 Os_TE_139118 Chr7 7057602 7057601 - ORSgTETN00200001 10994 0.0003 (1/2987) 0 * Os_TE_139119 Os_TE_139107 Chr7 7052739 7052738 + ORSgTEMT01602181 239 0.0040 (12/2984) 0 * * Os_TE_139093 Chr7 7048620 7048619 - ORSgTETN00200001 10994 0.0525 (133/2535) 0 * * Os_TE_139089 Chr7 7047097 7047098 + TRUNCATOR 2918 0.0017 (5/2993) 0 * * Os_TE_139053 Chr7 7033393 7033394 - COPI2_LTR 4733 0.0003 (1/2993) 0 * Os_TE_139052 Os_TE_139052 Chr7 7033389 7033388 + COPI2_LTR 4733 0.0003 (1/2993) 0 * Os_TE_139053 Os_TE_139045 Chr7 7031753 7031754 + OSTONOR1_LTR 6440 0.0003 (1/2967) 0 * * Os_TE_139033 Chr7 7028132 7028133 - RIREX_LTR 8828 0.0067 (20/2994) 0 * Os_TE_139032 Os_TE_139032 Chr7 7028128 7028127 + RIREX_LTR 8828 0.0070 (21/2995) 0 * Os_TE_139033 Os_TE_139031 Chr7 7028019 7028020 - RETROFIT5_LTR 4785 0.4737 (1415/2987) 0 * Os_TE_139030 Os_TE_139030 Chr7 7028015 7028014 + RETROFIT5_LTR 4785 0.4775 (1425/2984) 0 * Os_TE_139031 Os_TE_138968 Chr7 7003829 7003828 + STOWAWAY51_OS 246 0.0048 (14/2937) 0 * Os_TE_138967 Os_TE_138967 Chr7 7003823 7003824 + ORSgTEMT01601591 242 0.0119 (35/2946) 0 * Os_TE_138968 Os_TE_138960 Chr7 7001791 7001792 - TRSA_OS 353 0.0020 (6/2962) 0 * * Os_TE_138929 Chr7 6988032 6988033 + GYPSY1-LTR_OS 8900 0.0017 (5/2989) 0 * * Os_TE_138928 Chr7 6987980 6987981 + SPMLIKE 10989 0.0007 (2/2992) 0 * * Os_TE_138926 Chr7 6987391 6987390 - COPI2_LTR 4733 0.0003 (1/2901) 0 * * Os_TE_138920 Chr7 6985588 6985587 - COPI1_LTR 4721 0.0020 (4/1996) 0 * * Os_TE_138869 Chr7 6969455 6969454 + STOWAWAY51_OS 246 0.0007 (2/2992) 0 * Os_TE_138868 Os_TE_138868 Chr7 6969449 6969450 + ORSgTEMT01601591 242 0.0007 (2/2992) 0 * Os_TE_138869 Os_TE_138836 Chr7 6961572 6961571 - TYPEM 227 0.0007 (2/2908) 0 * * Os_TE_138831 Chr7 6954796 6954795 + TELIA 141 0.0003 (1/2902) 0 * * Os_TE_138782 Chr7 6928993 6928994 + TRUNCATOR 2918 0.0381 (61/1600) 0 * Os_TE_138781 Os_TE_138781 Chr7 6928987 6928986 - ORSiTERT00200154 9386 0.0370 (59/1596) 0 * Os_TE_138782 Os_TE_138780 Chr7 6928903 6928904 - SZ-62LTR 3649 0.0050 (8/1596) 0 * Os_TE_138779 Os_TE_138779 Chr7 6928899 6928898 + SZ-62LTR 3649 0.0050 (8/1600) 0 * Os_TE_138780 Os_TE_138759 Chr7 6921640 6921639 + RIRE2_LTR 11306 0.0733 (215/2935) 0 * * Os_TE_138748 Chr7 6914167 6914168 - COPI2_LTR 4733 0.0003 (1/2963) 0 * Os_TE_138747 Os_TE_138747 Chr7 6914163 6914162 + COPI2_LTR 4733 0.0003 (1/2960) 0 * Os_TE_138748 Os_TE_138745 Chr7 6912366 6912367 + ORSiTERTOOT00226 792 0.0050 (15/2979) 0 * * Os_TE_138740 Chr7 6910369 6910370 - F569 228 0.0747 (221/2958) 0 * * Os_TE_138724 Chr7 6905805 6905806 - RIREX_LTR 8828 0.0030 (9/2997) 0 * Os_TE_138723 Os_TE_138723 Chr7 6905801 6905800 + RIREX_LTR 8828 0.0033 (10/2996) 0 * Os_TE_138724 Os_TE_138721 Chr7 6905365 6905366 - ORSgTETN00200001 10994 0.0057 (17/2997) 0 * Os_TE_138720 Os_TE_138720 Chr7 6905363 6905362 + SPMLIKE 10989 0.0060 (18/2994) 0 * Os_TE_138721 Os_TE_138666 Chr7 6889972 6889973 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_138665 Os_TE_138665 Chr7 6889968 6889967 + COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_138666 Os_TE_138661 Chr7 6887340 6887339 - RIRE3_LTR 12054 0.0060 (18/2996) 0 * * Os_TE_138644 Chr7 6879517 6879518 - COPIA2-LTR_OS 6433 0.0027 (8/2919) 0 * Os_TE_138643 Os_TE_138643 Chr7 6879513 6879512 + COPIA2-LTR_OS 6433 0.0027 (8/2979) 0 * Os_TE_138644 Os_TE_138627 Chr7 6873553 6873554 - ENSPM5_OS 9581 0.0172 (48/2791) 0 * Os_TE_138626 Os_TE_138626 Chr7 6873551 6873550 + ENSPM5_OS 9581 0.0172 (48/2786) 0 * Os_TE_138627 Os_TE_138610 Chr7 6863125 6864493 - MERMITE 1401 0.3479 (1017/2923) 1 Intact * Os_TE_138604 Chr7 6860627 6860628 + SZ-17_LTR 3387 0.0003 (1/2988) 0 * Os_TE_138603 Os_TE_138603 Chr7 6860623 6860622 - SZ-17_LTR 3387 0.0003 (1/2975) 0 * Os_TE_138604 Os_TE_138602 Chr7 6860507 6859861 - STOWAWAY13_OS 251 0.3890 (1053/2707) 1 Intact * Os_TE_138591 Chr7 6858732 6858733 + OSTONOR1_LTR 6440 0.0008 (2/2572) 0 * Os_TE_138590 Os_TE_138590 Chr7 6858728 6858727 - ORSiTERT00100062 5674 0.0008 (2/2565) 0 * Os_TE_138591 Os_TE_138584 Chr7 6858035 6857818 + ORSgTEMT01601122 212 0.3466 (994/2868) 1 Intact * Os_TE_138569 Chr7 6849716 6849469 - ORSgTEMT00900145 249 0.3461 (1032/2982) 1 Intact * Os_TE_138520 Chr7 6836469 6836470 + ORSgTEMT01601934 207 0.0003 (1/2905) 0 * * Os_TE_138492 Chr7 6829340 6829341 + F1275 157 0.0013 (4/2970) 0 * * Os_TE_138451 Chr7 6810596 6810597 - SC-8_LTR 4951 0.0107 (32/2985) 0 * Os_TE_138450 Os_TE_138450 Chr7 6810592 6810591 + ORSiTERTOOT00381 4988 0.0111 (33/2982) 0 * Os_TE_138451 Os_TE_138444 Chr7 6807048 6807049 - INDITTO 263 0.0020 (6/2984) 0 * Os_TE_138443 Os_TE_138443 Chr7 6807046 6807045 + INDITTO 263 0.0020 (6/2995) 0 * Os_TE_138444 Os_TE_138442 Chr7 6806997 6806998 + ORSgTEMT00101194 329 0.0040 (12/2983) 0 * Os_TE_138441 Os_TE_138441 Chr7 6806993 6806992 + ORSgTEMT00100828 349 0.0034 (10/2985) 0 * Os_TE_138442 Os_TE_138439 Chr7 6806125 6806126 - SC-8_LTR 4951 0.0457 (137/2995) 0 * Os_TE_138438 Os_TE_138438 Chr7 6806121 6806120 + ORSiTERTOOT00381 4988 0.0464 (139/2997) 0 * Os_TE_138439 Os_TE_138436 Chr7 6803923 6803924 - NDNA1TNA_OS 334 0.5861 (1753/2991) 0 * Os_TE_138435 Os_TE_138435 Chr7 6803922 6803921 + NDNA1TNA_OS 334 0.5862 (1754/2992) 0 * Os_TE_138436 Os_TE_138433 Chr7 6803343 6803342 + TWIFB1 3737 0.0013 (4/2970) 0 * * Os_TE_138423 Chr7 6798956 6798957 + ORSgTEMT01601591 242 0.0007 (2/2872) 0 * * Os_TE_138409 Chr7 6792041 6792040 + ORSgTEMT01601525 239 0.0221 (66/2990) 0 * * Os_TE_138408 Chr7 6792038 6792039 + ORSgTEMT01602413 239 0.0217 (65/2992) 0 * Os_TE_138407 Os_TE_138407 Chr7 6792034 6792033 + ORSgTEMT01601571 232 0.0220 (66/2995) 0 * Os_TE_138408 Os_TE_138389 Chr7 6786264 6786265 - RIRE2_LTR 11306 0.5931 (1743/2939) 0 * * Os_TE_138378 Chr7 6779983 6779984 + RIREX_LTR 8828 0.0003 (1/2955) 0 * * Os_TE_138359 Chr7 6768848 6768849 - RIRE5-LTR_OS 6427 0.6624 (1948/2941) 0 * Os_TE_138358 Os_TE_138358 Chr7 6768844 6768843 + RIRE5-LTR_OS 6427 0.6551 (1913/2920) 0 * Os_TE_138359 Os_TE_138340 Chr7 6759558 6755887 - SZ-35LTR 3853 0.3053 (881/2886) 1 Intact * Os_TE_138332 Chr7 6754778 6754777 + RIRE2_LTR 11306 0.0007 (2/2982) 0 * * Os_TE_138331 Chr7 6754545 6754546 + COPIA2-LTR_OS 6433 0.0106 (31/2927) 0 * Os_TE_138330 Os_TE_138330 Chr7 6754541 6754540 - COPIA2-LTR_OS 6433 0.0114 (34/2975) 0 * Os_TE_138331 Os_TE_138309 Chr7 6748070 6748071 + TEMPINDAS 4259 0.0021 (5/2335) 0 * * Os_TE_138306 Chr7 6747391 6747392 - TNR8-21 428 0.0011 (3/2771) 0 * * Os_TE_138260 Chr7 6729100 6729101 - COPI2_LTR 4733 0.0007 (2/2929) 0 * Os_TE_138259 Os_TE_138259 Chr7 6729096 6729095 + COPI2_LTR 4733 0.0007 (2/2969) 0 * Os_TE_138260 Os_TE_138237 Chr7 6719878 6719877 + ORSgTEMT00500020 148 0.4978 (1443/2899) 0 * * Os_TE_138234 Chr7 6719365 6719366 - LTR10_OS 202 0.0041 (12/2944) 0 * * Os_TE_138228 Chr7 6718227 6718228 + TRUNCATOR 2918 0.0018 (5/2842) 0 * * Os_TE_138226 Chr7 6717383 6717382 - COPI2_LTR 4733 0.0003 (1/2929) 0 * * Os_TE_138199 Chr7 6705701 6705702 + SPMLIKE 10989 0.0017 (5/2930) 0 * Os_TE_138198 Os_TE_138198 Chr7 6705699 6705698 - CACTA-I 1124 0.0017 (5/2931) 0 * Os_TE_138199 Os_TE_138161 Chr7 6687512 6687513 - COPIA1-LTR_OS 9292 0.0007 (2/2931) 0 * * Os_TE_138150 Chr7 6680092 6680093 - TYPEM 227 0.0042 (5/1197) 0 * * Os_TE_138147 Chr7 6678796 6678795 + TNR3 1536 0.0043 (5/1174) 0 * * Os_TE_138121 Chr7 6669966 6669967 - ORSgTETN00200001 10994 0.0034 (10/2918) 0 * Os_TE_138120 Os_TE_138120 Chr7 6669964 6669963 + SPMLIKE 10989 0.0041 (12/2925) 0 * Os_TE_138121 Os_TE_138115 Chr7 6667288 6667289 - ORSgTETN00200001 10994 0.0021 (6/2916) 0 * * Os_TE_138051 Chr7 6640571 6640572 + ORSgTETNOOT01583 259 0.3222 (598/1856) 0 * * Os_TE_138044 Chr7 6638650 6638651 - CACTA-M 1129 0.0006 (1/1567) 0 * Os_TE_138043 Os_TE_138043 Chr7 6638648 6638647 + CACTA-M 1129 0.0006 (1/1564) 0 * Os_TE_138044 Os_TE_138042 Chr7 6638463 6638464 - COPIA2-LTR_OS 6433 0.0006 (1/1547) 0 * Os_TE_138041 Os_TE_138041 Chr7 6638459 6638458 + COPIA2-LTR_OS 6433 0.0006 (1/1587) 0 * Os_TE_138042 Os_TE_138015 Chr7 6626867 6626866 - ORSgTEMT01602404 253 0.0262 (41/1564) 0 * * Os_TE_138013 Chr7 6626016 6626017 - ORSgTEMT01601696 238 0.0274 (43/1572) 0 * * Os_TE_138012 Chr7 6625909 6625908 + ORSgTETN00200005 1121 0.2219 (352/1586) 0 * Os_TE_138011 Os_TE_138011 Chr7 6625905 6625906 + CACTA-B 1103 0.2260 (361/1597) 0 * Os_TE_138012 Os_TE_138009 Chr7 6623519 6623518 + F524 291 0.3934 (627/1594) 0 * * Os_TE_138001 Chr7 6617175 6617176 - RETROFIT_LTR 4866 0.0010 (1/1012) 0 * * Os_TE_137992 Chr7 6605751 6605752 - RETROSAT4_LTR 13504 0.3858 (618/1602) 0 * * Os_TE_137825 Chr7 6522847 6522846 - COPIA2-LTR_OS 6433 0.0010 (1/1017) 0 * * Os_TE_137822 Chr7 6518629 6518628 + ORSgTEMT01601525 239 0.0095 (9/952) 0 * Os_TE_137821 Os_TE_137821 Chr7 6518628 6518629 - ORSgTEMT01601525 239 0.0094 (9/955) 0 * Os_TE_137822 Os_TE_137789 Chr7 6497891 6497892 - COPIA2-LTR_OS 6433 0.0131 (13/994) 0 * Os_TE_137788 Os_TE_137788 Chr7 6497887 6497886 + COPIA2-LTR_OS 6433 0.0121 (12/993) 0 * Os_TE_137789 Os_TE_137688 Chr7 6451981 6451982 - COPI2_LTR 4733 0.0008 (2/2426) 0 * * Os_TE_137647 Chr7 6433755 6433756 + WUWU 113 0.2033 (605/2976) 0 * * Os_TE_137644 Chr7 6433591 6433590 - COPI1_LTR 4721 0.0017 (5/2975) 0 * * Os_TE_137600 Chr7 6424462 6425395 - SZ-9LTR 965 0.8006 (2393/2989) 1 Intact * Os_TE_137586 Chr7 6419040 6419039 - RIRE2_LTR 11306 0.0043 (11/2586) 0 * * Os_TE_137583 Chr7 6417293 6417294 - ENSPM3_OS 10837 0.0030 (9/2993) 0 * * Os_TE_137581 Chr7 6413360 6413361 + RIREX_LTR 8828 0.0030 (8/2700) 0 * Os_TE_137580 Os_TE_137580 Chr7 6413356 6413355 - RIREX_LTR 8828 0.0030 (8/2698) 0 * Os_TE_137581 Os_TE_137579 Chr7 6413230 6413231 + GYPSY-B_LTR 7068 0.0011 (3/2705) 0 * Os_TE_137578 Os_TE_137578 Chr7 6413226 6413225 - GYPSY-B_LTR 7068 0.0015 (4/2696) 0 * Os_TE_137579 Os_TE_137541 Chr7 6378740 6378739 - TRUNCATOR2_LTR 2904 0.0003 (1/2990) 0 * * Os_TE_137529 Chr7 6375646 6375645 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * * Os_TE_137527 Chr7 6375023 6373954 - OSTE15 1168 0.7903 (2269/2871) 1 Intact Os_TE_137525 Os_TE_137525 Chr7 6373950 6375023 - OSTE15 1168 0.7947 (2327/2928) 1 Intact Os_TE_137527 Os_TE_137514 Chr7 6367108 6367109 - CACTA-H 1152 0.0017 (5/2943) 0 * * Os_TE_137508 Chr7 6363964 6363965 + GYPSIA_LTR 20595 0.0013 (4/2990) 0 * * Os_TE_137500 Chr7 6360659 6360660 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_137499 Os_TE_137499 Chr7 6360655 6360654 + COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_137500 Os_TE_137497 Chr7 6360288 6360289 + ORSgTEMT01602051 240 0.0067 (20/2983) 0 * * Os_TE_137488 Chr7 6357806 6359037 + JOUZHEN 596 0.1710 (504/2948) 1 Intact * Os_TE_137474 Chr7 6353667 6344057 + ENSPM4_OS 11610 0.7504 (2231/2973) 1 Intact * Os_TE_137458 Chr7 6340447 6340446 - ORSgTEMT02900061 318 0.0056 (16/2852) 0 * Os_TE_137457 Os_TE_137457 Chr7 6340446 6340447 - STOWAWAY12_OS 312 0.0056 (16/2857) 0 * Os_TE_137458 Os_TE_137416 Chr7 6312876 6312877 + MPING 430 0.0004 (1/2543) 0 * * Os_TE_137398 Chr7 6301475 6301476 - STOWAWAY11_OS 292 0.0016 (4/2568) 0 * * Os_TE_137378 Chr7 6295015 6295016 + COPIA2-LTR_OS 6433 0.0009 (2/2294) 0 * Os_TE_137377 Os_TE_137377 Chr7 6295011 6295010 - COPIA2-LTR_OS 6433 0.0009 (2/2293) 0 * Os_TE_137378 Os_TE_137376 Chr7 6294137 6294138 - COPIA2-LTR_OS 6433 0.0004 (1/2282) 0 * Os_TE_137375 Os_TE_137375 Chr7 6294133 6294132 + COPIA2-LTR_OS 6433 0.0004 (1/2283) 0 * Os_TE_137376 Os_TE_137322 Chr7 6260914 6275764 + DS-RICE4N 715 0.8604 (2218/2578) 1 Intact * Os_TE_137319 Chr7 6259077 6259076 - COPI2_LTR 4733 0.0003 (1/2996) 0 * * Os_TE_137317 Chr7 6259020 6259019 - SC-4_LTR 5218 0.0003 (1/2986) 0 * * Os_TE_137315 Chr7 6258822 6258593 - ORSgTEMT01000003 232 0.8126 (2415/2972) 1 Intact * Os_TE_137305 Chr7 6255318 6255317 - RIREX_LTR 8828 0.0003 (1/2980) 0 * * Os_TE_137296 Chr7 6253408 6245533 + ENSPM_OS 9843 0.7273 (1800/2475) 1 Intact Os_TE_137289 Os_TE_137289 Chr7 6245532 6253408 - ENSPM_OS 9843 0.7819 (2287/2925) 1 Intact Os_TE_137296 Os_TE_137255 Chr7 6236204 6236205 - SC-8_LTR 4951 0.0003 (1/2948) 0 * Os_TE_137254 Os_TE_137254 Chr7 6236200 6236199 + SC-8_LTR 4951 0.0003 (1/2942) 0 * Os_TE_137255 Os_TE_137229 Chr7 6220960 6220961 - TNR3 1536 0.0844 (252/2986) 0 * * Os_TE_137225 Chr7 6218889 6218888 + TRUNCATOR 2918 0.0014 (4/2953) 0 * * Os_TE_137221 Chr7 6217935 6217936 + TRUNCATOR 2918 0.0074 (22/2979) 0 * * Os_TE_137220 Chr7 6217207 6217208 - COPIA2-LTR_OS 6433 0.0017 (5/2968) 0 * Os_TE_137219 Os_TE_137219 Chr7 6217203 6217202 + COPIA2-LTR_OS 6433 0.0017 (5/2973) 0 * Os_TE_137220 Os_TE_137190 Chr7 6202197 6202196 - CRM-LTR_OS 7749 0.0766 (229/2989) 0 * * Os_TE_137189 Chr7 6201761 6201762 + ORSiTERTOOT00385 6000 0.0003 (1/2928) 0 * * Os_TE_137123 Chr7 6172393 6172394 + GYPSO_LTR 9828 0.0022 (6/2681) 0 * * Os_TE_137098 Chr7 6145396 6145397 - COPIA2-LTR_OS 6433 0.0004 (1/2748) 0 * Os_TE_137097 Os_TE_137097 Chr7 6145392 6145391 + COPIA2-LTR_OS 6433 0.0004 (1/2747) 0 * Os_TE_137098 Os_TE_137092 Chr7 6144067 6144068 + RIRE3A_LTR 10580 0.0027 (8/2983) 0 * Os_TE_137091 Os_TE_137091 Chr7 6144063 6144062 - RIRE3A_LTR 10580 0.0027 (8/2983) 0 * Os_TE_137092 Os_TE_137090 Chr7 6143677 6143678 - COPIA2-LTR_OS 6433 0.0013 (4/2974) 0 * Os_TE_137089 Os_TE_137089 Chr7 6143672 6143671 + COPIA2-LTR_OS 6433 0.0013 (4/2974) 0 * Os_TE_137090 Os_TE_137047 Chr7 6115653 6115654 + MUDRN5_OS 374 0.0004 (1/2584) 0 * * Os_TE_137036 Chr7 6105581 6105582 + SPMLIKE 10989 0.0003 (1/2906) 0 * Os_TE_137035 Os_TE_137035 Chr7 6105579 6105578 - SPMLIKE 10989 0.0003 (1/2911) 0 * Os_TE_137036 Os_TE_136999 Chr7 6099543 6099544 - SZ-9LTR 965 0.0017 (5/2948) 0 * Os_TE_136998 Os_TE_136998 Chr7 6099539 6099538 + SZ-9LTR 965 0.0014 (4/2950) 0 * Os_TE_136999 Os_TE_136993 Chr7 6098051 6098050 + SZ-62LTR 3649 0.0003 (1/2948) 0 * * Os_TE_136961 Chr7 6084471 6084472 + RIREX_LTR 8828 0.0003 (1/2949) 0 * Os_TE_136960 Os_TE_136960 Chr7 6084467 6084466 - RIREX_LTR 8828 0.0003 (1/2921) 0 * Os_TE_136961 Os_TE_136957 Chr7 6083072 6071303 + CACTA-B 1103 0.8522 (2536/2976) 1 Intact Os_TE_136953 Os_TE_136953 Chr7 6071303 6083070 - ORSgTETN00200001 10994 0.8080 (1915/2370) -1 Intact Os_TE_136957 Os_TE_136925 Chr7 6061042 6061043 + ORSgTETNOOT01834 251 0.0124 (37/2978) 0 * * Os_TE_136901 Chr7 6050961 6050960 - ORSgTEMT01601696 238 0.0008 (2/2590) 0 * * Os_TE_136889 Chr7 6045883 6045884 - COPIA2-LTR_OS 6433 0.0003 (1/2976) 0 * Os_TE_136888 Os_TE_136888 Chr7 6045879 6045878 + COPIA2-LTR_OS 6433 0.0003 (1/2976) 0 * Os_TE_136889 Os_TE_136838 Chr7 6024603 6023161 - MERMITE18E 1528 0.6406 (1811/2827) 1 Intact * Os_TE_136834 Chr7 6022576 6022577 - COWARD 200 0.3542 (1049/2962) 0 * Os_TE_136833 Os_TE_136833 Chr7 6022574 6022573 + COWARD-3 221 0.3422 (1001/2925) 0 * Os_TE_136834 Os_TE_136829 Chr7 6021819 6021489 + ORSgTEMT00101674 340 0.6904 (1965/2846) 1 Intact * Os_TE_136819 Chr7 6018760 6018761 - SINE9_OS 293 0.0017 (5/2957) 0 * Os_TE_136818 Os_TE_136818 Chr7 6018749 6018748 + SINE9_OS 293 0.0010 (3/2955) 0 * Os_TE_136819 Os_TE_136798 Chr7 6007941 6007942 + MPING 430 0.0003 (1/2984) 0 * * Os_TE_136794 Chr7 6006910 6006909 - SZ-4_LTR 5991 0.0003 (1/2962) 0 * * Os_TE_136712 Chr7 5979585 5979584 + ORSgTEMT00900453 262 0.5842 (1721/2946) 0 * * Os_TE_136711 Chr7 5979573 5979349 + ORSgTEMT02400041 225 0.4317 (1271/2944) 1 Intact * Os_TE_136635 Chr7 5953909 5953910 + SC-8_LTR 4951 0.0027 (8/2992) 0 * Os_TE_136634 Os_TE_136634 Chr7 5953905 5953904 - SC-8_LTR 4951 0.0027 (8/2991) 0 * Os_TE_136635 Os_TE_136580 Chr7 5928823 5923471 + SZ-62LTR 3649 0.7600 (1941/2554) 1 Intact Os_TE_136571 Os_TE_136571 Chr7 5923471 5928823 - SZ-62LTR 3649 0.7614 (1972/2590) 1 Intact Os_TE_136580 Os_TE_136563 Chr7 5919127 5915358 + SC-5 3770 0.7109 (2004/2819) 1 Intact Os_TE_136562 Os_TE_136562 Chr7 5915358 5919127 - SC-5 3770 0.7103 (2003/2820) 1 Intact Os_TE_136563 Os_TE_136558 Chr7 5909939 5909940 - SEVERIN-2 1952 0.0636 (190/2988) 0 * * Os_TE_136550 Chr7 5907234 5907233 + MUDRN5_OS 374 0.0638 (191/2993) 0 * * Os_TE_136544 Chr7 5905686 5905687 + ORSiOTOT00000037 220 0.0572 (170/2970) 0 * * Os_TE_136531 Chr7 5902864 5902863 + ORSiTERTOOT00097 759 0.6142 (1799/2929) 0 * * Os_TE_136497 Chr7 5881164 5881165 + COPI2_LTR 4733 0.0020 (6/2990) 0 * Os_TE_136496 Os_TE_136496 Chr7 5881160 5881159 - COPI2_LTR 4733 0.0017 (5/2988) 0 * Os_TE_136497 Os_TE_136490 Chr7 5877508 5877509 - SC-3_LTR 5748 0.0003 (1/2981) 0 * Os_TE_136489 Os_TE_136489 Chr7 5877504 5877503 + ORSiTERTOOT00296 5553 0.0003 (1/2985) 0 * Os_TE_136490 Os_TE_136487 Chr7 5875599 5875600 - F569 228 0.0003 (1/2862) 0 * * Os_TE_136477 Chr7 5870937 5867612 + SZ-40LTR 2465 0.4124 (1227/2975) 1 Intact Os_TE_136476 Os_TE_136476 Chr7 5867612 5870937 - SZ-40LTR 2465 0.4168 (1243/2982) 1 Intact Os_TE_136477 Os_TE_136471 Chr7 5864632 5864631 + STOWAWAY51_OS 246 0.6074 (1768/2911) 0 * * Os_TE_136465 Chr7 5863701 5863463 + ORSgTEMT01602181 239 0.3730 (1051/2818) 1 Intact Os_TE_136464 Os_TE_136464 Chr7 5863463 5863701 + ORSgTEMT01602181 239 0.4066 (1203/2959) 1 Intact Os_TE_136465 Os_TE_136463 Chr7 5863272 5863273 - ENSPM7_OS 10954 0.6004 (1779/2963) 0 * Os_TE_136462 Os_TE_136462 Chr7 5863270 5863269 - EnSpm-N2_OS 1282 0.6023 (1790/2972) 0 * Os_TE_136463 Os_TE_136456 Chr7 5861185 5860843 + ORSgTEMT00101583 342 0.5044 (1149/2278) 1 Intact Os_TE_136451 Os_TE_136451 Chr7 5860839 5861183 + ORSgTEMT00100291 345 0.4238 (1229/2900) 1 Intact Os_TE_136456 Os_TE_136446 Chr7 5859444 5859445 + ORSgTEMT01701101 133 0.5898 (1708/2896) 0 * * Os_TE_136439 Chr7 5850244 5850245 + COPIA2-LTR_OS 6433 0.0003 (1/2919) 0 * Os_TE_136438 Os_TE_136438 Chr7 5850240 5850239 - COPIA2-LTR_OS 6433 0.0003 (1/2928) 0 * Os_TE_136439 Os_TE_136429 Chr7 5848623 5848622 - ORSgTEMT02000040 196 0.5863 (1672/2852) 0 * * Os_TE_136426 Chr7 5847608 5847609 + ORSgTEMT00300063 413 0.6007 (1766/2940) 0 * * Os_TE_136410 Chr7 5841465 5841466 + SZ-24LTR 428 0.6016 (1794/2982) 0 * Os_TE_136409 Os_TE_136409 Chr7 5841461 5841460 + RETRO3_LTR 12751 0.5977 (1774/2968) 0 * Os_TE_136410 Os_TE_136407 Chr7 5840865 5840627 - ORSgTEMT01602413 239 0.4087 (1217/2978) 1 Intact * Os_TE_136397 Chr7 5832824 5832825 + COPI2_LTR 4733 0.0003 (1/2987) 0 * Os_TE_136396 Os_TE_136396 Chr7 5832820 5832819 - COPI2_LTR 4733 0.0003 (1/2988) 0 * Os_TE_136397 Os_TE_136395 Chr7 5831588 5831589 + TRUNCATOR 2918 0.0003 (1/2958) 0 * * Os_TE_136383 Chr7 5821292 5821293 + ORSiTERTOOT00034 791 0.0007 (2/2983) 0 * * Os_TE_136323 Chr7 5787298 5787297 + TRUNCATOR 2918 0.0009 (1/1088) 0 * * Os_TE_136316 Chr7 5784995 5784996 + AMYLTP 383 0.0014 (4/2917) 0 * Os_TE_136315 Os_TE_136315 Chr7 5784987 5784986 - AMYLTP 383 0.0014 (4/2919) 0 * Os_TE_136316 Os_TE_136307 Chr7 5779976 5779977 + ORSgTEMT00600408 352 0.0007 (2/2984) 0 * * Os_TE_136251 Chr7 5739453 5739454 + AMYLTP 383 0.0017 (5/2978) 0 * Os_TE_136250 Os_TE_136250 Chr7 5739445 5739444 - AMYLTP 383 0.0017 (5/2973) 0 * Os_TE_136251 Os_TE_136248 Chr7 5737816 5737817 - RIREX_LTR 8828 0.0020 (6/2981) 0 * * Os_TE_136245 Chr7 5737736 5737735 - COPIA2-LTR_OS 6433 0.0017 (5/2982) 0 * * Os_TE_136243 Chr7 5735936 5735937 + CACTA-I 1124 0.0017 (5/2963) 0 * Os_TE_136242 Os_TE_136242 Chr7 5735934 5735933 - CACTA-M 1129 0.0014 (4/2957) 0 * Os_TE_136243 Os_TE_136220 Chr7 5722858 5722857 - OSTE20 496 0.0015 (3/1942) 0 * * Os_TE_136135 Chr7 5698561 5698562 - SC-3_LTR 5748 0.0003 (1/2990) 0 * Os_TE_136134 Os_TE_136134 Chr7 5698557 5698556 + ORSiTERTOOT00296 5553 0.0003 (1/2991) 0 * Os_TE_136135 Os_TE_136132 Chr7 5697521 5697520 - SC-3_LTR 5748 0.0003 (1/2979) 0 * * Os_TE_136123 Chr7 5692321 5692320 + ORSgTETN00100092 209 0.0007 (2/2989) 0 * * Os_TE_136099 Chr7 5684063 5684064 + SC-8_LTR 4951 0.0007 (2/2998) 0 * Os_TE_136098 Os_TE_136098 Chr7 5684059 5684058 - SC-8_LTR 4951 0.0007 (2/2998) 0 * Os_TE_136099 Os_TE_136043 Chr7 5673216 5673217 - AMYLTP 383 0.0020 (6/2973) 0 * Os_TE_136042 Os_TE_136042 Chr7 5673208 5673207 + AMYLTP 383 0.0020 (6/2971) 0 * Os_TE_136043 Os_TE_135988 Chr7 5653022 5653021 - SINE16_OS 116 0.0549 (164/2985) 0 * * Os_TE_135967 Chr7 5636906 5636907 + INDITTO 263 0.0003 (1/2956) 0 * Os_TE_135966 Os_TE_135966 Chr7 5636904 5636903 - INDITTO 263 0.0004 (1/2809) 0 * Os_TE_135967 Os_TE_135963 Chr7 5635615 5630560 - OSTE33 1012 0.6225 (1751/2813) 1 Intact * Os_TE_135955 Chr7 5629686 5629687 + MERMITEB 1610 0.0581 (170/2928) 0 * Os_TE_135954 Os_TE_135954 Chr7 5629682 5629681 + MERMITEB 1610 0.0503 (146/2902) 0 * Os_TE_135955 Os_TE_135953 Chr7 5628252 5628253 + MuDR3_OS 8604 0.0569 (169/2969) 0 * Os_TE_135952 Os_TE_135952 Chr7 5628245 5628244 - MuDR3_OS 8604 0.0570 (169/2966) 0 * Os_TE_135953 Os_TE_135951 Chr7 5628111 5628110 - ORSgTEMT00900099 250 0.0616 (184/2989) 0 * Os_TE_135950 Os_TE_135950 Chr7 5628107 5628108 + ORSgTEMT00901844 250 0.0609 (182/2988) 0 * Os_TE_135951 Os_TE_135949 Chr7 5627715 5627714 + ORSgTEMT01701115 144 0.0562 (167/2970) 0 * * Os_TE_135948 Chr7 5627712 5627713 + ORSgTEMT01700791 134 0.0608 (181/2976) 0 * Os_TE_135947 Os_TE_135947 Chr7 5627708 5627707 - ORSgTEMT00200185 144 0.0569 (169/2968) 0 * Os_TE_135948 Os_TE_135942 Chr7 5626353 5626354 - ORSiTERT00200154 9386 0.0498 (147/2953) 0 * * Os_TE_135933 Chr7 5624308 5624309 - STOWAWAY11_OS 292 0.0536 (157/2927) 0 * * Os_TE_135929 Chr7 5623737 5623738 + ORSgTEMT00901844 250 0.0010 (3/2873) 0 * * Os_TE_135876 Chr7 5597567 5597568 + COPIA2-LTR_OS 6433 0.0003 (1/2952) 0 * Os_TE_135875 Os_TE_135875 Chr7 5597563 5597562 - COPIA2-LTR_OS 6433 0.0003 (1/2952) 0 * Os_TE_135876 Os_TE_135813 Chr7 5570555 5570554 + ORSgTETNOOT01507 246 0.0017 (5/2989) 0 * * Os_TE_135806 Chr7 5568557 5568558 + ORSiTERTOOT00381 4988 0.6033 (1807/2995) 0 * Os_TE_135805 Os_TE_135805 Chr7 5568553 5568552 - SC-8_LTR 4951 0.6008 (1797/2991) 0 * Os_TE_135806 Os_TE_135801 Chr7 5564967 5564968 - TYPEU1 380 0.5957 (1715/2879) 0 * * Os_TE_135762 Chr7 5545772 5545771 - ORSgTEMT01400009 212 0.0003 (1/2955) 0 * * Os_TE_135756 Chr7 5535003 5535004 + ORSiTERTOOT00350 5275 0.0497 (148/2978) 0 * Os_TE_135755 Os_TE_135755 Chr7 5534999 5534998 - ORSiTERTOOT00350 5275 0.0553 (165/2985) 0 * Os_TE_135756 Os_TE_135737 Chr7 5525478 5525479 + ORSiTERTOOT00296 5553 0.0003 (1/2988) 0 * Os_TE_135736 Os_TE_135736 Chr7 5525474 5525473 - SC-3_LTR 5748 0.0003 (1/2987) 0 * Os_TE_135737 Os_TE_135686 Chr7 5510720 5510721 - TELIA 141 0.5485 (1644/2997) 0 * Os_TE_135685 Os_TE_135685 Chr7 5510712 5510711 + TELIA 141 0.5424 (1618/2983) 0 * Os_TE_135686 Os_TE_135680 Chr7 5507045 5507044 + SZ-37_LTR 12001 0.0017 (5/2989) 0 * * Os_TE_135656 Chr7 5497351 5497350 - STOWAWAY51_OS 246 0.0003 (1/2939) 0 * * Os_TE_135649 Chr7 5496665 5496666 + RETRO2_LTR 12874 0.5486 (1637/2984) 0 * * Os_TE_135642 Chr7 5491636 5491635 - RETROSAT3_LTR 11537 0.0003 (1/2983) 0 * * Os_TE_135633 Chr7 5487534 5487535 + RETROSAT2LTR 12796 0.0017 (5/2933) 0 * Os_TE_135632 Os_TE_135632 Chr7 5487532 5487531 - RETROSAT2LTR 12796 0.0014 (4/2945) 0 * Os_TE_135633 Os_TE_135630 Chr7 5486575 5486574 - ORSiTETNOOT00107 906 0.0037 (11/2995) 0 * Os_TE_135629 Os_TE_135629 Chr7 5486571 5486572 + ORSiTETNOOT00107 906 0.0040 (12/2995) 0 * Os_TE_135630 Os_TE_135628 Chr7 5486185 5486186 - RETROSAT3_LTR 11537 0.0037 (11/2998) 0 * Os_TE_135627 Os_TE_135627 Chr7 5486181 5486180 + RETROSAT3_LTR 11537 0.0040 (12/2998) 0 * Os_TE_135628 Os_TE_135621 Chr7 5482704 5482703 - TRUNCATOR2_LTR 2904 0.6115 (1815/2968) 0 * * Os_TE_135604 Chr7 5473005 5473006 + COPI2_LTR 4733 0.0094 (28/2983) 0 * Os_TE_135603 Os_TE_135603 Chr7 5473001 5473000 - COPI2_LTR 4733 0.0101 (30/2983) 0 * Os_TE_135604 Os_TE_135593 Chr7 5472061 5472062 + OSTE33 1012 0.0058 (17/2953) 0 * * Os_TE_135590 Chr7 5471882 5471881 - RETRO2_LTR 12874 0.0061 (18/2968) 0 * * Os_TE_135588 Chr7 5471307 5471306 + ORSgTEMT01600222 242 0.0010 (3/2986) 0 * * Os_TE_135551 Chr7 5459902 5459901 - STOLAB 312 0.0091 (27/2969) 0 * * Os_TE_135532 Chr7 5448996 5448997 - SZ-22_LTR 4403 0.0095 (28/2949) 0 * Os_TE_135531 Os_TE_135531 Chr7 5448992 5448991 + SZ-22_LTR 4403 0.0088 (26/2952) 0 * Os_TE_135532 Os_TE_135522 Chr7 5439739 5439740 + COPIA2-LTR_OS 6433 0.0007 (2/2951) 0 * Os_TE_135521 Os_TE_135521 Chr7 5439735 5439734 - COPIA2-LTR_OS 6433 0.0007 (2/2959) 0 * Os_TE_135522 Os_TE_135519 Chr7 5438752 5438753 + SC-4_LTR 5218 0.0032 (4/1241) -1 * * Os_TE_135442 Chr7 5407271 5407272 + COPIA2-LTR_OS 6433 0.0003 (1/2969) 0 * Os_TE_135441 Os_TE_135441 Chr7 5407267 5407266 - COPIA2-LTR_OS 6433 0.0003 (1/2970) 0 * Os_TE_135442 Os_TE_135440 Chr7 5406450 5406451 - COPIA2-LTR_OS 6433 0.0003 (1/2966) 0 * * Os_TE_135436 Chr7 5404683 5404357 - ORSgTEMT00101046 330 0.3394 (999/2943) 1 Intact * Os_TE_135372 Chr7 5363551 5363552 - MuDR3_OS 8604 0.0014 (4/2803) 0 * Os_TE_135371 Os_TE_135371 Chr7 5363542 5363541 - MuDR3_OS 8604 0.0014 (4/2845) 0 * Os_TE_135372 Os_TE_135267 Chr7 5321744 5321745 - ORSgTEMT00501219 127 0.0102 (30/2937) 0 * * Os_TE_135214 Chr7 5309672 5309671 - CLOUD 734 0.0003 (1/2995) 0 * * Os_TE_135199 Chr7 5304997 5304996 + RIREX_LTR 8828 0.0007 (2/2918) 0 * * Os_TE_135198 Chr7 5304410 5304411 + ORSiTERTOOT00332 5395 0.0004 (1/2466) 0 * * Os_TE_135193 Chr7 5302613 5302612 - MERMITE18E 1528 0.0037 (10/2673) 0 * * Os_TE_135191 Chr7 5301670 5299590 - DS-RICE4N 715 0.6174 (1196/1937) 1 Intact * Os_TE_135180 Chr7 5298024 5298025 - RIREX_LTR 8828 0.0009 (1/1144) 0 * Os_TE_135179 Os_TE_135179 Chr7 5298020 5298019 + RIREX_LTR 8828 0.0009 (1/1140) 0 * Os_TE_135180 Os_TE_135173 Chr7 5296769 5296770 + COPIA2-LTR_OS 6433 0.0199 (23/1154) 0 * Os_TE_135172 Os_TE_135172 Chr7 5296765 5296764 - COPIA2-LTR_OS 6433 0.0190 (22/1158) 0 * Os_TE_135173 Os_TE_135153 Chr7 5291640 5291641 + ORSiTERTOOT00097 759 0.1445 (154/1066) 0 * Os_TE_135152 Os_TE_135152 Chr7 5291636 5291635 - SZ-22_LTR 4403 0.1524 (164/1076) 0 * Os_TE_135153 Os_TE_135141 Chr7 5281002 5281001 + ORSgTEMT00300063 413 0.0008 (1/1243) 0 * * Os_TE_135096 Chr7 5257975 5257976 - COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_135095 Os_TE_135095 Chr7 5257971 5257970 + COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_135096 Os_TE_135087 Chr7 5254105 5254106 - SZ-14LTR 1193 0.0030 (9/2987) 0 * * Os_TE_135085 Chr7 5253332 5253333 - ORSgTEMT00502359 149 0.0027 (8/2992) 0 * * Os_TE_135072 Chr7 5241028 5241029 - MuDR-5_OS 17471 0.0010 (3/2934) 0 * * Os_TE_135070 Chr7 5239714 5239715 + SPMLIKE 10989 0.5501 (1637/2976) 0 * Os_TE_135069 Os_TE_135069 Chr7 5239713 5239712 - ORSgTETN00200001 10994 0.5536 (1652/2984) 0 * Os_TE_135070 Os_TE_135067 Chr7 5238379 5238380 + SPMLIKE 10989 0.0013 (4/2994) 0 * * Os_TE_135048 Chr7 5236557 5236558 + COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_135047 Os_TE_135047 Chr7 5236553 5236552 - COPI2_LTR 4733 0.0003 (1/2993) 0 * Os_TE_135048 Os_TE_135046 Chr7 5235692 5235693 - SC-4_LTR 5218 0.0004 (1/2832) 0 * Os_TE_135045 Os_TE_135045 Chr7 5235688 5235687 + SC-4_LTR 5218 0.0004 (1/2832) 0 * Os_TE_135046 Os_TE_135040 Chr7 5234796 5234797 + RIREX_LTR 8828 0.0003 (1/2989) 0 * Os_TE_135039 Os_TE_135039 Chr7 5234792 5234791 - RIREX_LTR 8828 0.0003 (1/2988) 0 * Os_TE_135040 Os_TE_135036 Chr7 5232396 5232395 + TOS17LTR 138 0.0007 (1/1476) 0 * * Os_TE_135029 Chr7 5228182 5228183 - ORSiTERTOOT00329 5144 0.0003 (1/2966) 0 * * Os_TE_135021 Chr7 5221692 5225054 + ORSiCMCM00100019 2717 0.4889 (1460/2986) 1 Intact * Os_TE_135019 Chr7 5221669 5221668 + TRUNCATOR 2918 0.0011 (3/2730) 0 * * Os_TE_135017 Chr7 5221438 5221437 + STOWAWAY50_OS 174 0.0013 (4/2989) 0 * Os_TE_135016 Os_TE_135016 Chr7 5221435 5221436 - STOWAWAY50_OS 174 0.0013 (4/2989) 0 * Os_TE_135017 Os_TE_135014 Chr7 5220423 5220424 + SZ-62LTR 3649 0.0017 (5/2996) 0 * Os_TE_135013 Os_TE_135013 Chr7 5220419 5220418 - SZ-62LTR 3649 0.0017 (5/2996) 0 * Os_TE_135014 Os_TE_135010 Chr7 5219140 5219141 - ORSgTEMT02400179 221 0.0014 (4/2946) 0 * * Os_TE_135007 Chr7 5218689 5218688 + HARB-1_OS 5166 0.0003 (1/2909) 0 * * Os_TE_134993 Chr7 5217132 5217239 - ORSgTEMT01701739 120 0.6111 (1416/2317) 1 Intact * Os_TE_134992 Chr7 5215673 5215674 - COPIA2-LTR_OS 6433 0.0010 (3/2983) 0 * Os_TE_134991 Os_TE_134991 Chr7 5215669 5215668 + COPIA2-LTR_OS 6433 0.0007 (2/2984) 0 * Os_TE_134992 Os_TE_134974 Chr7 5208231 5208232 - ORSgTETN00200001 10994 0.0004 (1/2739) 0 * Os_TE_134973 Os_TE_134973 Chr7 5208229 5208228 + SPMLIKE 10989 0.0004 (1/2740) 0 * Os_TE_134974 Os_TE_134970 Chr7 5205739 5205740 + TRUNCATOR 2918 0.0003 (1/2995) 0 * * Os_TE_134966 Chr7 5202866 5202865 + ORSiTERTOOT00394 4969 0.0007 (2/2996) 0 * * Os_TE_134959 Chr7 5200482 5194952 - ORSiTERTOOT00329 5144 0.5067 (1518/2996) 1 Intact * Os_TE_134935 Chr7 5181505 5181506 + ORSiTERTOOT00296 5553 0.0003 (1/2994) 0 * Os_TE_134934 Os_TE_134934 Chr7 5181501 5181500 - SC-3_LTR 5748 0.0003 (1/2995) 0 * Os_TE_134935 Os_TE_134889 Chr7 5165044 5165045 - COPI2_LTR 4733 0.1866 (556/2980) 0 * Os_TE_134888 Os_TE_134888 Chr7 5165040 5165039 + COPI2_LTR 4733 0.1919 (574/2991) 0 * Os_TE_134889 Os_TE_134887 Chr7 5164578 5164579 + COPIA2-LTR_OS 6433 0.0040 (12/2993) 0 * Os_TE_134886 Os_TE_134886 Chr7 5164574 5164573 - COPIA2-LTR_OS 6433 0.0040 (12/2986) 0 * Os_TE_134887 Os_TE_134846 Chr7 5150678 5150677 + ORSgTEMT00901844 250 0.0017 (5/2991) 0 * Os_TE_134845 Os_TE_134845 Chr7 5150676 5150677 + ORSgTEMT00900648 236 0.0017 (5/2993) 0 * Os_TE_134846 Os_TE_134842 Chr7 5149265 5149264 + COPIA2-LTR_OS 6433 0.0003 (1/2956) 0 * * Os_TE_134814 Chr7 5140843 5140844 - ORSiTETNOOT00200 3563 0.0018 (5/2855) 0 * Os_TE_134813 Os_TE_134813 Chr7 5140836 5140835 + TWIFBIG 3567 0.0032 (9/2857) 0 * Os_TE_134814 Os_TE_134793 Chr7 5137893 5137894 + RIREX_LTR 8828 0.0004 (1/2831) 0 * * Os_TE_134772 Chr7 5131270 5131271 + ORSgTETNOOT00908 242 0.0077 (23/2992) 0 * Os_TE_134771 Os_TE_134771 Chr7 5131268 5131267 + ORSgTETNOOT01522 239 0.0074 (22/2992) 0 * Os_TE_134772 Os_TE_134757 Chr7 5126340 5126339 - SZ-62LTR 3649 0.0039 (8/2046) 0 * * Os_TE_134753 Chr7 5125276 5125277 + AMYLTP 383 0.0118 (35/2974) 0 * Os_TE_134752 Os_TE_134752 Chr7 5125268 5125267 - AMYLTP 383 0.0111 (33/2984) 0 * Os_TE_134753 Os_TE_134751 Chr7 5125225 5125226 - ORSgTEMT02400246 177 0.0668 (199/2981) 0 * * Os_TE_134697 Chr7 5107071 5107070 - ORSgTEMT02400179 221 0.0003 (1/2938) 0 * Os_TE_134696 Os_TE_134696 Chr7 5107069 5107070 + ORSgTEMT02400034 225 0.0003 (1/2912) 0 * Os_TE_134697 Os_TE_134681 Chr7 5104109 5104110 + STOWAWAY51_OS 246 0.0081 (24/2966) 0 * * Os_TE_134673 Chr7 5101285 5101286 - RETRO2_LTR 12874 0.0010 (3/2976) 0 * * Os_TE_134642 Chr7 5087820 5087821 - RETRO1_LTR 8314 0.0054 (15/2778) 0 * Os_TE_134641 Os_TE_134641 Chr7 5087816 5087815 + RETRO2A_LTR 12895 0.0046 (13/2809) -1 * Os_TE_134642 Os_TE_134618 Chr7 5085368 5085369 - AMYLTP 383 0.0630 (188/2982) 0 * Os_TE_134617 Os_TE_134617 Chr7 5085360 5085359 + AMYLTP 383 0.0637 (190/2982) 0 * Os_TE_134618 Os_TE_134601 Chr7 5079228 5079227 - TYPEM 227 0.0004 (1/2827) 0 * * Os_TE_134565 Chr7 5064988 5064989 + CACTA-G1 797 0.0010 (3/2992) 0 * * Os_TE_134517 Chr7 5040079 5040080 + ORSgTEMT04600037 279 0.0017 (5/2965) 0 * Os_TE_134516 Os_TE_134516 Chr7 5040073 5040072 - ORSgTEMT04600010 284 0.0017 (5/2970) 0 * Os_TE_134517 Os_TE_134515 Chr7 5040064 5040065 - MPING 430 0.0003 (1/2987) 0 * Os_TE_134514 Os_TE_134514 Chr7 5040062 5040061 + MPING 430 0.0003 (1/2976) 0 * Os_TE_134515 Os_TE_134506 Chr7 5038453 5038454 + TELIA 141 0.0003 (1/2862) 0 * * Os_TE_134491 Chr7 5031740 5031741 + ORSgTEMT01700513 151 0.0020 (6/2960) 0 * * Os_TE_134488 Chr7 5031413 5031414 - RETROSAT4_LTR 13504 0.0044 (13/2938) 0 * * Os_TE_134485 Chr7 5029603 5029602 - ORSgTEMT00700002 381 0.0003 (1/2986) 0 * * Os_TE_134472 Chr7 5021594 5021593 + COPI2_LTR 4733 0.0003 (1/2986) 0 * * Os_TE_134451 Chr7 5011768 5011767 - SEVERIN-2 1952 0.0561 (167/2979) 0 * * Os_TE_134415 Chr7 4988228 4988229 - ENSPM4_OS 11610 0.0017 (5/2950) 0 * * Os_TE_134414 Chr7 4988059 4988060 + ORSiTERTOOT00296 5553 0.0010 (3/2994) 0 * * Os_TE_134409 Chr7 4986009 4984611 + ORSiCMCM00100016 1387 0.8659 (2583/2983) 1 Intact * Os_TE_134373 Chr7 4955498 4955499 + ORSiTERTOOT00381 4988 0.0013 (4/2984) 0 * Os_TE_134372 Os_TE_134372 Chr7 4955494 4955493 - SC-8_LTR 4951 0.0013 (4/2982) 0 * Os_TE_134373 Os_TE_134327 Chr7 4935425 4935426 - MuDR3_OS 8604 0.0038 (11/2900) 0 * Os_TE_134326 Os_TE_134326 Chr7 4935416 4935415 - MuDR3_OS 8604 0.0045 (13/2885) 0 * Os_TE_134327 Os_TE_134305 Chr7 4910924 4910925 - MPING 430 0.0003 (1/2984) 0 * * Os_TE_134224 Chr7 4897272 4897273 + CLOUD-6 508 0.1190 (355/2984) 0 * Os_TE_134223 Os_TE_134223 Chr7 4897264 4897263 - CLOUD-6 508 0.1185 (354/2987) 0 * Os_TE_134224 Os_TE_134184 Chr7 4868921 4868920 - TRUNCATOR2_LTR 2904 0.0010 (3/2994) 0 * * Os_TE_134168 Chr7 4862844 4862843 - COPIA2-LTR_OS 6433 0.0003 (1/2951) 0 * * Os_TE_134166 Chr7 4862611 4862612 + ENSPM4_OS 11610 0.0003 (1/2974) 0 * * Os_TE_134147 Chr7 4857761 4857760 - TRUNCATOR2_LTR 2904 0.0013 (4/2966) 0 * * Os_TE_134132 Chr7 4855488 4855489 - SEVERIN-2 1952 0.0003 (1/2983) 0 * * Os_TE_134128 Chr7 4854364 4854365 - COPIA2-LTR_OS 6433 0.0007 (2/2953) 0 * Os_TE_134127 Os_TE_134127 Chr7 4854360 4854359 + COPIA2-LTR_OS 6433 0.0003 (1/2944) 0 * Os_TE_134128 Os_TE_134126 Chr7 4854219 4854220 - SEVERIN-2 1952 0.0013 (4/2979) 0 * * Os_TE_134100 Chr7 4847859 4847860 - TYPEM 227 0.0017 (5/2963) 0 * * Os_TE_134089 Chr7 4834780 4834781 + RIRE3_LTR 12054 0.0027 (8/2996) 0 * Os_TE_134088 Os_TE_134088 Chr7 4834776 4834775 - RIRE3_LTR 12054 0.0030 (9/2997) 0 * Os_TE_134089 Os_TE_134083 Chr7 4832809 4832810 + SZ-40LTR 2465 0.0030 (9/2996) 0 * Os_TE_134082 Os_TE_134082 Chr7 4832805 4832804 - GYPSY-A_LTR 8951 0.0030 (9/2996) 0 * Os_TE_134083 Os_TE_134062 Chr7 4827791 4827792 - JOUZHENA 607 0.0020 (6/2976) 0 * Os_TE_134061 Os_TE_134061 Chr7 4827784 4827783 + JOUZHENA 607 0.0013 (4/2980) 0 * Os_TE_134062 Os_TE_134060 Chr7 4827631 4827632 - SC-3_LTR 5748 0.0017 (5/2979) 0 * Os_TE_134059 Os_TE_134059 Chr7 4827627 4827626 + SC-3_LTR 5748 0.0017 (5/2981) 0 * Os_TE_134060 Os_TE_134057 Chr7 4826112 4826111 - ORSgTEMT02400246 177 0.0007 (2/2967) 0 * Os_TE_134056 Os_TE_134056 Chr7 4826111 4826112 - TYPEM 227 0.0007 (2/2972) 0 * Os_TE_134057 Os_TE_134055 Chr7 4824570 4824571 + MPING 430 0.0027 (8/2993) 0 * Os_TE_134054 Os_TE_134054 Chr7 4824568 4824567 - MPING 430 0.0023 (7/2988) 0 * Os_TE_134055 Os_TE_134049 Chr7 4820532 4820533 - SZ-22_LTR 4403 0.0004 (1/2799) 0 * Os_TE_134048 Os_TE_134048 Chr7 4820528 4820527 + ORSiTERTOOT00034 791 0.0004 (1/2809) 0 * Os_TE_134049 Os_TE_134026 Chr7 4810272 4810271 + OSTE27 969 0.0003 (1/2882) 0 * * Os_TE_134012 Chr7 4804392 4804393 + RIREX_LTR 8828 0.0003 (1/2914) 0 * Os_TE_134011 Os_TE_134011 Chr7 4804388 4804387 - RIREX_LTR 8828 0.0003 (1/2938) 0 * Os_TE_134012 Os_TE_134008 Chr7 4803530 4803531 - GYPSY-A_LTR 8951 0.0004 (1/2736) 0 * * Os_TE_134003 Chr7 4801105 4801106 + MUDRN1_OS 764 0.0020 (6/2948) 0 * Os_TE_134002 Os_TE_134002 Chr7 4801097 4801096 - MUDRN1_OS 764 0.0014 (4/2947) 0 * Os_TE_134003 Os_TE_134001 Chr7 4800690 4800691 + COPIA2-LTR_OS 6433 0.0003 (1/2984) 0 * Os_TE_134000 Os_TE_134000 Chr7 4800686 4800685 - COPIA2-LTR_OS 6433 0.0003 (1/2982) 0 * Os_TE_134001 Os_TE_133980 Chr7 4796200 4796199 - ORSgTEMT00900099 250 0.0004 (1/2772) 0 * * Os_TE_133972 Chr7 4793031 4781781 + SPMLIKE 10989 0.5263 (1539/2924) 1 Intact Os_TE_133968 Os_TE_133968 Chr7 4781781 4793031 - ORSgTETN00200001 10994 0.5100 (1453/2849) 1 Intact Os_TE_133972 Os_TE_133941 Chr7 4773065 4773066 + TNR2A 152 0.0020 (6/2982) 0 * * Os_TE_133901 Chr7 4763544 4763545 - OSTONOR1_LTR 6440 0.0003 (1/2979) 0 * Os_TE_133900 Os_TE_133900 Chr7 4763540 4763539 + OSTONOR1_LTR 6440 0.0003 (1/2980) 0 * Os_TE_133901 Os_TE_133884 Chr7 4756077 4756076 - TRUNCATOR 2918 0.0008 (2/2575) 0 * Os_TE_133883 Os_TE_133883 Chr7 4756076 4756077 + TRUNCATOR 2918 0.0009 (2/2351) 0 * Os_TE_133884 Os_TE_133878 Chr7 4752307 4752306 + SZ-40LTR 2465 0.0435 (130/2989) 0 * * Os_TE_133865 Chr7 4744119 4744120 + F569 228 0.0003 (1/2988) 0 * Os_TE_133864 Os_TE_133864 Chr7 4744117 4744116 - F569 228 0.0003 (1/2987) 0 * Os_TE_133865 Os_TE_133863 Chr7 4743477 4743478 + SUSU 279 0.0017 (5/2976) 0 * Os_TE_133862 Os_TE_133862 Chr7 4743475 4743474 - SUSU 279 0.0017 (5/2982) 0 * Os_TE_133863 Os_TE_133843 Chr7 4734105 4734106 - ORSgTEMT01400014 209 0.2498 (736/2946) 0 * * Os_TE_133817 Chr7 4718237 4717096 + CACTA-B 1103 0.4005 (1192/2976) 1 Intact Os_TE_133815 Os_TE_133815 Chr7 4717096 4718234 - ORSgTETN00200001 10994 0.4031 (1202/2982) 1 Intact Os_TE_133817 Os_TE_133788 Chr7 4695944 4695945 + RIREX_LTR 8828 0.0011 (3/2801) 0 * Os_TE_133787 Os_TE_133787 Chr7 4695940 4695939 - RIREX_LTR 8828 0.0011 (3/2780) 0 * Os_TE_133788 Os_TE_133777 Chr7 4691543 4691544 + ORSgTETNOOT01930 140 0.0017 (5/2969) 0 * * Os_TE_133769 Chr7 4689454 4689453 + ORSgTEMT01602181 239 0.1215 (364/2996) 0 * Os_TE_133768 Os_TE_133768 Chr7 4689450 4689451 + ORSgTEMT01601934 207 0.1227 (367/2992) 0 * Os_TE_133769 Os_TE_133767 Chr7 4689200 4689199 - STOWAWAY47_OS 148 0.0013 (4/2992) 0 * Os_TE_133766 Os_TE_133766 Chr7 4689197 4689198 - STOWAWAY47_OS 148 0.0017 (5/2993) 0 * Os_TE_133767 Os_TE_133717 Chr7 4669496 4669497 - MuDR3_OS 8604 0.0003 (1/2995) 0 * * Os_TE_133716 Chr7 4668817 4668816 + STOWAWAY41_OS 264 0.0017 (5/2973) 0 * * Os_TE_133708 Chr7 4663103 4663104 + RETROSAT4_LTR 13504 0.0003 (1/2954) 0 * * Os_TE_133699 Chr7 4654455 4654239 + ORSgTETNOOT00908 242 0.1887 (564/2989) 1 Intact * Os_TE_133649 Chr7 4638134 4626390 + RETROSOR2_LTR 11699 0.4033 (1161/2879) 1 Intact Os_TE_133635 Os_TE_133635 Chr7 4626390 4638134 - SZ-50_LTR 11691 0.4068 (1178/2896) 1 Intact Os_TE_133649 Os_TE_133627 Chr7 4625591 4625590 + TWIFB1 3737 0.5936 (1557/2623) 0 * * Os_TE_133620 Chr7 4623212 4623211 + ORSgTEMT00600272 361 0.0017 (5/2985) 0 * * Os_TE_133608 Chr7 4614604 4614605 - INDITTO 263 0.0017 (5/2996) 0 * * Os_TE_133603 Chr7 4614040 4614041 - STOWAWAY1_OS 149 0.0010 (3/2985) 0 * * Os_TE_133584 Chr7 4604542 4604543 - ORSiTERT00100080 6173 0.0809 (242/2993) 0 * Os_TE_133583 Os_TE_133583 Chr7 4604537 4604536 + ORSiTERT00100080 6173 0.0822 (246/2992) 0 * Os_TE_133584 Os_TE_133576 Chr7 4603177 4603178 - MPING 430 0.0003 (1/2976) 0 * * Os_TE_133528 Chr7 4585901 4585902 - TRUNCATOR2_LTR 2904 0.0010 (3/2995) 0 * Os_TE_133527 Os_TE_133527 Chr7 4585897 4585896 + ORSiCMCM00100019 2717 0.0007 (2/2996) 0 * Os_TE_133528 Os_TE_133526 Chr7 4585498 4585499 - RIREX_LTR 8828 0.0003 (1/2995) 0 * Os_TE_133525 Os_TE_133525 Chr7 4585494 4585493 + RIREX_LTR 8828 0.0003 (1/2996) 0 * Os_TE_133526 Os_TE_133512 Chr7 4583738 4583737 - ORSgTEMT02400179 221 0.0023 (3/1294) 0 * * Os_TE_133497 Chr7 4580216 4580215 + STOWAWAY51_OS 246 0.0010 (3/2899) 0 * * Os_TE_133412 Chr7 4561603 4561604 - MuDR4_OS 7610 0.0005 (1/2189) 0 * * Os_TE_133402 Chr7 4560561 4560560 + ORSgTEMT00600272 361 0.0007 (2/2957) 0 * * Os_TE_133401 Chr7 4560324 4560323 + ORSgTEMT01601591 242 0.0003 (1/2986) 0 * Os_TE_133400 Os_TE_133400 Chr7 4560321 4560322 + ORSgTEMT01601591 242 0.0003 (1/2984) 0 * Os_TE_133401 Os_TE_133395 Chr7 4558912 4558913 + ORSiTERTOOT00296 5553 0.0053 (16/2996) 0 * Os_TE_133394 Os_TE_133394 Chr7 4558908 4558907 - SC-3_LTR 5748 0.0053 (16/2994) 0 * Os_TE_133395 Os_TE_133376 Chr7 4549784 4549785 + ORSiTERTOOT00296 5553 0.0331 (98/2961) 0 * Os_TE_133375 Os_TE_133375 Chr7 4549780 4549779 - SC-3_LTR 5748 0.0338 (100/2957) 0 * Os_TE_133376 Os_TE_133374 Chr7 4549635 4549636 + SC-8_LTR 4951 0.0003 (1/2987) 0 * Os_TE_133373 Os_TE_133373 Chr7 4549631 4549630 - SC-8_LTR 4951 0.0003 (1/2977) 0 * Os_TE_133374 Os_TE_133364 Chr7 4544348 4544349 - SZ-30_LTR 6377 0.0017 (5/2887) 0 * Os_TE_133363 Os_TE_133363 Chr7 4544344 4544343 + SZ-30_LTR 6377 0.0017 (5/2859) 0 * Os_TE_133364 Os_TE_133354 Chr7 4539808 4539809 - RIREX_LTR 8828 0.0013 (4/2977) 0 * Os_TE_133353 Os_TE_133353 Chr7 4539804 4539803 + RIREX_LTR 8828 0.0013 (4/2984) 0 * Os_TE_133354 Os_TE_133342 Chr7 4530946 4530945 + MERMITEA 1710 0.0014 (3/2123) 0 * * Os_TE_133338 Chr7 4528889 4528890 - MPING 430 0.0007 (2/2983) 0 * Os_TE_133337 Os_TE_133337 Chr7 4528887 4528886 + MPING 430 0.0007 (2/2983) 0 * Os_TE_133338 Os_TE_133336 Chr7 4528314 4528315 + OLO24 345 0.0003 (1/2911) 0 * Os_TE_133335 Os_TE_133335 Chr7 4528312 4528311 - OLO24 345 0.0003 (1/2893) 0 * Os_TE_133336 Os_TE_133316 Chr7 4524497 4524498 - RIREX_LTR 8828 0.0161 (48/2980) 0 * Os_TE_133315 Os_TE_133315 Chr7 4524493 4524492 + RIREX_LTR 8828 0.0172 (51/2972) 0 * Os_TE_133316 Os_TE_133308 Chr7 4521543 4521544 + COPIA2-LTR_OS 6433 0.0003 (1/2983) 0 * Os_TE_133307 Os_TE_133307 Chr7 4521539 4521538 - COPIA2-LTR_OS 6433 0.0003 (1/2980) 0 * Os_TE_133308 Os_TE_133306 Chr7 4521096 4521097 + ORSgTEMT00600272 361 0.0003 (1/2931) 0 * Os_TE_133305 Os_TE_133305 Chr7 4521091 4521090 + ORSgTEMT00600376 329 0.0003 (1/2973) 0 * Os_TE_133306 Os_TE_133292 Chr7 4515123 4515124 - ORSgTEMT00501447 126 0.0007 (2/2920) 0 * Os_TE_133291 Os_TE_133291 Chr7 4515121 4515120 + ORSgTETNOOT01930 140 0.0014 (4/2926) 0 * Os_TE_133292 Os_TE_133271 Chr7 4510147 4510148 - SC-3_LTR 5748 0.0003 (1/2983) 0 * * Os_TE_133265 Chr7 4503213 4503214 + MERMITE18E 1528 0.0013 (4/2980) 0 * Os_TE_133264 Os_TE_133264 Chr7 4503209 4503208 - MERMITE18E 1528 0.0013 (4/2977) 0 * Os_TE_133265 Os_TE_133249 Chr7 4498317 4498318 - SC-8_LTR 4951 0.0003 (1/2925) 0 * * Os_TE_133245 Chr7 4496530 4496529 + ORSgTETNOOT00323 125 0.0013 (4/2968) 0 * Os_TE_133244 Os_TE_133244 Chr7 4496528 4496529 - ORSgTEMT00501447 126 0.0013 (4/2964) 0 * Os_TE_133245 Os_TE_133234 Chr7 4489120 4489121 + ORSiTERTOOT00296 5553 0.0013 (4/2972) 0 * Os_TE_133233 Os_TE_133233 Chr7 4489116 4489115 - SC-3_LTR 5748 0.0010 (3/2973) 0 * Os_TE_133234 Os_TE_133229 Chr7 4484714 4484715 + RIREX_LTR 8828 0.0003 (1/2986) 0 * Os_TE_133228 Os_TE_133228 Chr7 4484710 4484709 - RIREX_LTR 8828 0.0003 (1/2989) 0 * Os_TE_133229 Os_TE_133220 Chr7 4478251 4478252 + OSTONOR1_LTR 6440 0.0007 (2/2958) 0 * Os_TE_133219 Os_TE_133219 Chr7 4478247 4478246 - ORSiTERT00100062 5674 0.0007 (2/2956) 0 * Os_TE_133220 Os_TE_133173 Chr7 4459528 4459529 + SC-5 3770 0.0013 (4/2993) 0 * Os_TE_133172 Os_TE_133172 Chr7 4459524 4459523 - SC-5 3770 0.0013 (4/2989) 0 * Os_TE_133173 Os_TE_133151 Chr7 4445493 4445494 - RIREX_LTR 8828 0.0003 (1/2990) 0 * Os_TE_133150 Os_TE_133150 Chr7 4445489 4445488 + RIREX_LTR 8828 0.0003 (1/2991) 0 * Os_TE_133151 Os_TE_133149 Chr7 4444915 4444914 - TRUNCATOR 2918 0.5983 (1774/2965) 0 * Os_TE_133148 Os_TE_133148 Chr7 4444914 4444915 + TRUNCATOR 2918 0.6028 (1800/2986) 0 * Os_TE_133149 Os_TE_133134 Chr7 4432212 4432213 - TNR3 1536 0.0015 (4/2724) 0 * * Os_TE_133126 Chr7 4430259 4430260 - SZ-48LTR 3632 0.6014 (1794/2983) 0 * Os_TE_133125 Os_TE_133125 Chr7 4430255 4430254 + SZ-48LTR 3632 0.6070 (1816/2992) 0 * Os_TE_133126 Os_TE_133092 Chr7 4418597 4412159 + COPIA2-LTR_OS 6433 0.2692 (706/2623) 1 Intact * Os_TE_133079 Chr7 4408935 4408934 + COPI2_LTR 4733 0.0003 (1/2994) 0 * * Os_TE_133077 Chr7 4407953 4407952 + COPI2_LTR 4733 0.0020 (6/2995) 0 * * Os_TE_133068 Chr7 4401099 4401100 + COPIA2-LTR_OS 6433 0.6051 (1805/2983) 0 * Os_TE_133067 Os_TE_133067 Chr7 4401095 4401094 - COPIA2-LTR_OS 6433 0.6006 (1782/2967) 0 * Os_TE_133068 Os_TE_133044 Chr7 4390486 4390485 - AMYLTP 383 0.0017 (5/2976) 0 * * Os_TE_133037 Chr7 4379476 4379477 - RETROSAT2LTRA 3112 0.0010 (3/2990) 0 * * Os_TE_133020 Chr7 4372830 4372831 - NDNA1TNA_OS 334 0.0013 (4/2989) 0 * Os_TE_133019 Os_TE_133019 Chr7 4372828 4372827 + NDNA1TNA_OS 334 0.0010 (3/2991) 0 * Os_TE_133020 Os_TE_133018 Chr7 4372633 4372632 - NDNA1TNA_OS 334 0.0294 (87/2959) 0 * Os_TE_133017 Os_TE_133017 Chr7 4372614 4372615 + NDNA1TNA_OS 334 0.0310 (91/2940) 0 * Os_TE_133018 Os_TE_133016 Chr7 4372389 4372390 - COPI2_LTR 4733 0.0003 (1/2962) 0 * * Os_TE_133008 Chr7 4371706 4370596 + COPIA2-LTR_OS 6433 0.3728 (1106/2967) 1 Solo_LTR Os_TE_133006 Os_TE_133006 Chr7 4370596 4371706 - COPIA2-LTR_OS 6433 0.3723 (1105/2968) 1 Solo_LTR Os_TE_133008 Os_TE_132989 Chr7 4368107 4368106 - ORSgTERT00200486 3946 0.0007 (2/2842) 0 * * Os_TE_132988 Chr7 4368101 4368100 - ORSgTERT00200916 5990 0.0014 (4/2828) 0 * * Os_TE_132984 Chr7 4367106 4367105 - ORSgTETNOOT00544 147 0.0014 (4/2905) 0 * * Os_TE_132952 Chr7 4350043 4350044 - ORSiTERTOOT00441 4741 0.0003 (1/2979) 0 * Os_TE_132951 Os_TE_132951 Chr7 4350039 4350038 + ORSiTERTOOT00441 4741 0.0003 (1/2981) 0 * Os_TE_132952 Os_TE_132945 Chr7 4346903 4346753 - ORSgTEMT00502293 151 0.4083 (1214/2973) 1 Intact Os_TE_132943 Os_TE_132943 Chr7 4346751 4346900 - ORSgTEMT00501512 150 0.4059 (1210/2981) 1 Intact Os_TE_132945 Os_TE_132940 Chr7 4346192 4346191 + COPI1_LTR 4721 0.5352 (1338/2500) 0 * * Os_TE_132939 Chr7 4346154 4346153 - CACTA-H 1152 0.0709 (85/1199) 0 * Os_TE_132938 Os_TE_132938 Chr7 4346153 4346154 + CACTA-B 1103 0.0322 (88/2732) 0 * Os_TE_132939 Os_TE_132937 Chr7 4346096 4345836 - STOWAWAY13_OS 251 0.4546 (1192/2622) 1 Intact Os_TE_132935 Os_TE_132935 Chr7 4345834 4346098 - ORSgTEMT02300007 256 0.4276 (1167/2729) 1 Intact Os_TE_132937 Os_TE_132932 Chr7 4344204 4344205 - F118 179 0.0014 (4/2956) 0 * Os_TE_132931 Os_TE_132931 Chr7 4344197 4344196 + F118 179 0.0014 (4/2960) 0 * Os_TE_132932 Os_TE_132930 Chr7 4343410 4343409 - COPI2_LTR 4733 0.0017 (5/2979) 0 * * Os_TE_132916 Chr7 4334152 4334151 - ORSgTEMT00901345 248 0.0017 (5/2991) 0 * * Os_TE_132908 Chr7 4327324 4327325 - COPI2_LTR 4733 0.0003 (1/2981) 0 * Os_TE_132907 Os_TE_132907 Chr7 4327320 4327319 + COPI2_LTR 4733 0.0003 (1/2981) 0 * Os_TE_132908 Os_TE_132899 Chr7 4321876 4321875 - COPI2_LTR 4733 0.0011 (3/2829) 0 * * Os_TE_132888 Chr7 4314826 4314827 + ORSiTERTOOT00296 5553 0.0013 (4/2987) 0 * Os_TE_132887 Os_TE_132887 Chr7 4314822 4314821 - SC-3_LTR 5748 0.0013 (4/2985) 0 * Os_TE_132888 Os_TE_132879 Chr7 4310842 4310843 + ORSgTEMT00600160 361 0.0003 (1/2978) 0 * Os_TE_132878 Os_TE_132878 Chr7 4310839 4310838 - ORSgTEMT00600085 364 0.0003 (1/2972) 0 * Os_TE_132879 Os_TE_132867 Chr7 4308347 4308348 - MPING 430 0.0004 (1/2811) 0 * * Os_TE_132842 Chr7 4301877 4301878 + COPIA2-LTR_OS 6433 0.5999 (1786/2977) 0 * * Os_TE_132837 Chr7 4300567 4300568 - RETROSAT2LTRA 3112 0.0013 (4/2987) 0 * Os_TE_132836 Os_TE_132836 Chr7 4300563 4300562 + RETROSAT3_LTR 11537 0.0013 (4/2981) 0 * Os_TE_132837 Os_TE_132834 Chr7 4299216 4298923 - F524 291 0.4041 (1203/2977) 0.9 Intact Os_TE_132831 Os_TE_132831 Chr7 4298922 4299212 + F524 291 0.4014 (1195/2977) 0.92 Intact Os_TE_132834 Os_TE_132830 Chr7 4298533 4298534 - ORSgTETN00200001 10994 0.0003 (1/2950) 0 * Os_TE_132829 Os_TE_132829 Chr7 4298531 4298530 + SPMLIKE 10989 0.0003 (1/2949) 0 * Os_TE_132830 Os_TE_132826 Chr7 4295909 4295910 + SZ-9LTR 965 0.0007 (2/2958) 0 * Os_TE_132825 Os_TE_132825 Chr7 4295905 4295904 - SZ-9LTR 965 0.0007 (2/2971) 0 * Os_TE_132826 Os_TE_132823 Chr7 4295849 4295738 + ORSgTETNOOT01930 140 0.4038 (1203/2979) 1 Intact Os_TE_132821 Os_TE_132821 Chr7 4295733 4295844 - ORSgTETNOOT00900 112 0.4063 (1207/2971) 1 Intact Os_TE_132823 Os_TE_132810 Chr7 4293223 4293077 + ORSgTEMT01701265 147 0.4037 (1195/2960) 1 Intact Os_TE_132809 Os_TE_132809 Chr7 4293077 4293230 + STOWAWAY50_OS 174 0.4014 (1193/2972) 1 Intact Os_TE_132810 Os_TE_132807 Chr7 4291872 4291873 - MDM1 326 0.6161 (1828/2967) 0 * * Os_TE_132805 Chr7 4291701 4291702 - STOWAWAY11_OS 292 0.6096 (1802/2956) 0 * Os_TE_132804 Os_TE_132804 Chr7 4291700 4291699 + STOWAWAY11_OS 292 0.6138 (1821/2967) 0 * Os_TE_132805 Os_TE_132798 Chr7 4289794 4290030 - ORSgTEMT01400010 213 0.4041 (1199/2967) 1 Intact * Os_TE_132791 Chr7 4288030 4288148 - ORSgTEMT00500777 141 0.4161 (1192/2865) 1 Intact * Os_TE_132789 Chr7 4287348 4287585 - ORSgTEMT01601493 303 0.4207 (1188/2824) 1 Intact * Os_TE_132788 Chr7 4287218 4287219 + ORSiTERTOOT00034 791 0.0005 (1/2145) 0 * * Os_TE_132787 Chr7 4287179 4287178 - ORSgTEMT01602467 227 0.6003 (1760/2932) 0 * * Os_TE_132763 Chr7 4277018 4277019 + ORSgTEMT01400031 216 0.0230 (68/2957) 0 * * Os_TE_132752 Chr7 4272444 4272445 - RETROSAT2LTR 12796 0.6152 (1794/2916) 0 * Os_TE_132751 Os_TE_132751 Chr7 4272442 4272441 + RETROSAT2LTR 12796 0.6055 (1739/2872) 0 * Os_TE_132752 Os_TE_132743 Chr7 4269527 4269526 - ORSgTEMT00900099 250 0.0274 (82/2990) 0 * Os_TE_132742 Os_TE_132742 Chr7 4269525 4269526 - ORSgTEMT00901345 248 0.0268 (80/2990) 0 * Os_TE_132743 Os_TE_132739 Chr7 4266849 4266850 - MuDR4_OS 7610 0.0032 (4/1255) 0 * * Os_TE_132732 Chr7 4266377 4266521 - ORSgTEMT00502293 151 0.5353 (1242/2320) 1 Intact * Os_TE_132731 Chr7 4266106 4266299 - COWARD 200 0.4107 (1221/2973) 1 Intact * Os_TE_132711 Chr7 4247815 4242614 - SZ-54_LTR 5203 0.4055 (1206/2974) 1 Intact * Os_TE_132695 Chr7 4240385 4240386 + COPIA2-LTR_OS 6433 0.0003 (1/2942) 0 * Os_TE_132694 Os_TE_132694 Chr7 4240381 4240380 - COPIA2-LTR_OS 6433 0.0003 (1/2923) 0 * Os_TE_132695 Os_TE_132665 Chr7 4232063 4232064 - SZ-62LTR 3649 0.0007 (2/2963) 0 * * Os_TE_132635 Chr7 4220340 4220341 - COPI2_LTR 4733 0.0003 (1/2993) 0 * * Os_TE_132621 Chr7 4215665 4215664 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * * Os_TE_132609 Chr7 4211836 4211835 + ORSiTERTOOT00028 8600 0.0062 (18/2919) 0 * Os_TE_132608 Os_TE_132608 Chr7 4211833 4211834 - TRUNCATOR2_LTR 2904 0.0065 (19/2902) 0 * Os_TE_132609 Os_TE_132588 Chr7 4209416 4209417 - SZ-22_LTR 4403 0.0013 (4/2965) 0 * Os_TE_132587 Os_TE_132587 Chr7 4209412 4209411 + ORSiTERTOOT00226 792 0.0013 (4/2971) 0 * Os_TE_132588 Os_TE_132573 Chr7 4204972 4204973 + COPI2_LTR 4733 0.0003 (1/2977) 0 * Os_TE_132572 Os_TE_132572 Chr7 4204968 4204967 - COPI2_LTR 4733 0.0003 (1/2974) 0 * Os_TE_132573 Os_TE_132565 Chr7 4202534 4202535 - COPIA2-LTR_OS 6433 0.0448 (134/2992) 0 * Os_TE_132564 Os_TE_132564 Chr7 4202530 4202529 + COPIA2-LTR_OS 6433 0.0358 (106/2957) 0 * Os_TE_132565 Os_TE_132546 Chr7 4198652 4198653 + RIREX_LTR 8828 0.0003 (1/2898) 0 * Os_TE_132545 Os_TE_132545 Chr7 4198648 4198647 - RIREX_LTR 8828 0.0003 (1/2907) 0 * Os_TE_132546 Os_TE_132522 Chr7 4185253 4185254 - SC-3_LTR 5748 0.0003 (1/2979) 0 * Os_TE_132521 Os_TE_132521 Chr7 4185249 4185248 + ORSiTERTOOT00296 5553 0.0003 (1/2979) 0 * Os_TE_132522 Os_TE_132499 Chr7 4173722 4173723 + COPIA2-LTR_OS 6433 0.6115 (1802/2947) 0 * Os_TE_132498 Os_TE_132498 Chr7 4173718 4173717 - COPIA2-LTR_OS 6433 0.6117 (1816/2969) 0 * Os_TE_132499 Os_TE_132489 Chr7 4172829 4172830 + ORSgTEMT01601591 242 0.0007 (2/2974) 0 * * Os_TE_132471 Chr7 4166761 4166760 - ORSgTEMT01602404 253 0.0007 (2/2964) 0 * * Os_TE_132429 Chr7 4139050 4139051 - ORSiTETNOOT00156 3648 0.0007 (2/2722) 0 * * Os_TE_132394 Chr7 4125354 4125353 + TRUNCATOR 2918 0.5970 (1788/2995) 0 * Os_TE_132393 Os_TE_132393 Chr7 4125353 4125354 - TRUNCATOR 2918 0.5891 (1746/2964) 0 * Os_TE_132394 Os_TE_132334 Chr7 4106334 4106335 - NDNA1TNA_OS 334 0.0111 (33/2986) 0 * Os_TE_132333 Os_TE_132333 Chr7 4106332 4106331 + NDNA1TNA_OS 334 0.0114 (34/2983) 0 * Os_TE_132334 Os_TE_132314 Chr7 4103238 4103239 - MPING 430 0.0004 (1/2856) 0 * * Os_TE_132303 Chr7 4099233 4099234 - TELIA 141 0.0003 (1/2903) 0 * * Os_TE_132198 Chr7 4049364 4049365 - OSTONOR1_LTR 6440 0.0003 (1/2929) 0 * * Os_TE_132188 Chr7 4046206 4046205 + ORSgTERT00200392 431 0.0011 (3/2788) 0 * * Os_TE_132153 Chr7 4037723 4037722 + ORSgTEMT01601591 242 0.0048 (14/2888) 0 * Os_TE_132152 Os_TE_132152 Chr7 4037717 4037718 + STOWAWAY51_OS 246 0.0055 (16/2903) 0 * Os_TE_132153 Os_TE_132151 Chr7 4036155 4036154 - STOWAWAY51_OS 246 0.0003 (1/2942) 0 * Os_TE_132150 Os_TE_132150 Chr7 4036152 4036153 - STOWAWAY51_OS 246 0.0003 (1/2943) 0 * Os_TE_132151 Os_TE_132136 Chr7 4033931 4033930 - STOWAWAY51_OS 246 0.0003 (1/2967) 0 * Os_TE_132135 Os_TE_132135 Chr7 4033925 4033926 + STOWAWAY51_OS 246 0.0003 (1/2972) 0 * Os_TE_132136 Os_TE_132081 Chr7 4013789 4013790 + OLO24 345 0.1556 (465/2988) 0 * Os_TE_132080 Os_TE_132080 Chr7 4013787 4013786 - OLO24 345 0.1503 (447/2974) 0 * Os_TE_132081 Os_TE_132026 Chr7 3987279 3987278 + TRUNCATOR2_LTR 2904 0.0003 (1/2989) 0 * * Os_TE_132018 Chr7 3985153 3985152 - STOWAWAY51_OS 246 0.0058 (15/2590) 0 * * Os_TE_131957 Chr7 3965997 3965998 - ORSgTEMT00700002 381 0.0003 (1/2996) 0 * * Os_TE_131956 Chr7 3964841 3964842 - MPING 430 0.0003 (1/2974) 0 * Os_TE_131955 Os_TE_131955 Chr7 3964839 3964838 + MPING 430 0.0003 (1/2978) 0 * Os_TE_131956 Os_TE_131948 Chr7 3962472 3962471 + COPIA2-LTR_OS 6433 0.0003 (1/2965) 0 * * Os_TE_131937 Chr7 3960551 3960550 - COPIA2-LTR_OS 6433 0.0007 (2/2979) 0 * * Os_TE_131934 Chr7 3960106 3960107 - COPI2_LTR 4733 0.0004 (1/2732) 0 * Os_TE_131933 Os_TE_131933 Chr7 3960102 3960101 + COPI2_LTR 4733 0.0004 (1/2693) 0 * Os_TE_131934 Os_TE_131914 Chr7 3946961 3943718 + ORSiCMCM00100019 2717 0.8976 (263/293) 1 Intact * Os_TE_131899 Chr7 3927518 3927519 + STOWAWAY11_OS 292 0.0004 (1/2857) 0 * * Os_TE_131880 Chr7 3912090 3912089 + STOWAWAY43_OS 233 0.8621 (1482/1719) 0 * * Os_TE_131844 Chr7 3896583 3896582 - MPING 430 0.0038 (1/265) 0 * * Os_TE_131843 Chr7 3895928 3895929 - ORSgTEMT02300007 256 0.0038 (1/262) 0 * * Os_TE_131834 Chr7 3890315 3890110 - ORSgTEMT01400014 209 0.1813 (263/1451) 1 Intact * Os_TE_131819 Chr7 3874687 3874342 - ORSgTEMT01900024 348 0.0856 (255/2979) 1 Intact * Os_TE_131798 Chr7 3863644 3863643 - ORSgTEMT02400246 177 0.0017 (5/2995) 0 * Os_TE_131797 Os_TE_131797 Chr7 3863643 3863644 - TYPEM 227 0.0017 (5/2996) 0 * Os_TE_131798 Os_TE_131795 Chr7 3858978 3858979 - ORSgTEMT01900052 340 0.0004 (1/2834) 0 * * Os_TE_131735 Chr7 3845590 3845591 + MUDRN5_OS 374 0.0003 (1/2989) 0 * Os_TE_131734 Os_TE_131734 Chr7 3845589 3845588 - ORSgTEMT00700002 381 0.0007 (2/2990) 0 * Os_TE_131735 Os_TE_131732 Chr7 3843591 3843592 + INDITTO 263 0.0055 (16/2923) 0 * * Os_TE_131721 Chr7 3836667 3836668 - SC-8_LTR 4951 0.0057 (17/2976) 0 * Os_TE_131720 Os_TE_131720 Chr7 3836663 3836662 + ORSiTERTOOT00381 4988 0.0054 (16/2978) 0 * Os_TE_131721 Os_TE_131676 Chr7 3813439 3813440 - RIRE2_LTR 11306 0.0007 (2/2990) 0 * * Os_TE_131673 Chr7 3812580 3806094 + MDR2 6967 0.0880 (258/2933) 1 Intact Os_TE_131671 Os_TE_131671 Chr7 3806094 3812580 + MDR2 6967 0.0879 (263/2992) 1 Intact Os_TE_131673 Os_TE_131662 Chr7 3803404 3803405 + MPING 430 0.0020 (6/2993) 0 * * Os_TE_131647 Chr7 3795866 3795865 - ORSiTERTOOT00274 4749 0.8645 (2584/2989) 0 * * Os_TE_131608 Chr7 3782502 3782503 - SC-3_LTR 5748 0.0003 (1/2991) 0 * * Os_TE_131606 Chr7 3781438 3781439 + SEVERIN-2 1952 0.0003 (1/2995) 0 * Os_TE_131605 Os_TE_131605 Chr7 3781436 3781435 - SEVERIN-2 1952 0.0003 (1/2996) 0 * Os_TE_131606 Os_TE_131603 Chr7 3778201 3778202 - SC-3_LTR 5748 0.0003 (1/2987) 0 * * Os_TE_131567 Chr7 3766681 3766682 - ORSgTEMT00500578 129 0.0010 (3/2884) 0 * * Os_TE_131531 Chr7 3752942 3752943 + MPING 430 0.0020 (6/2998) 0 * Os_TE_131530 Os_TE_131530 Chr7 3752940 3752939 - MPING 430 0.0020 (6/2998) 0 * Os_TE_131531 Os_TE_131529 Chr7 3752580 3752581 - SZ-22_LTR 4403 0.0007 (2/2999) 0 * Os_TE_131528 Os_TE_131528 Chr7 3752576 3752575 + ORSiTERTOOT00097 759 0.0007 (2/2996) 0 * Os_TE_131529 Os_TE_131525 Chr7 3752100 3752101 - MPING 430 0.0007 (2/2997) 0 * Os_TE_131524 Os_TE_131524 Chr7 3752098 3752097 + MPING 430 0.0007 (2/2997) 0 * Os_TE_131525 Os_TE_131522 Chr7 3751773 3751774 - TYPEM 227 0.0003 (1/2995) 0 * * Os_TE_131518 Chr7 3751439 3751440 - RIRE5-LTR_OS 6427 0.0003 (1/2977) 0 * * Os_TE_131502 Chr7 3743965 3743966 - RIREX_LTR 8828 0.0003 (1/2977) 0 * Os_TE_131501 Os_TE_131501 Chr7 3743961 3743960 + RIREX_LTR 8828 0.0003 (1/2978) 0 * Os_TE_131502 Os_TE_131483 Chr7 3734465 3734464 - SC-3_LTR 5748 0.0003 (1/2998) 0 * * Os_TE_131421 Chr7 3705921 3705922 + RETRO2A_LTR 12895 0.0491 (147/2996) 0 * Os_TE_131420 Os_TE_131420 Chr7 3705917 3705916 - RETRO1_LTR 8314 0.0487 (146/2996) 0 * Os_TE_131421 Os_TE_131407 Chr7 3704901 3704900 + ORSgTEMT00700017 386 0.0403 (119/2955) 0 * * Os_TE_131406 Chr7 3704894 3704895 - ORSgTEMT00700002 381 0.0434 (129/2971) 0 * Os_TE_131405 Os_TE_131405 Chr7 3704893 3704892 + MUDRN5_OS 374 0.0411 (122/2965) 0 * Os_TE_131406 Os_TE_131403 Chr7 3702957 3702958 - OSTONOR1_LTR 6440 0.0003 (1/2960) 0 * Os_TE_131402 Os_TE_131402 Chr7 3702953 3702952 + OSTONOR1_LTR 6440 0.0003 (1/2969) 0 * Os_TE_131403 Os_TE_131401 Chr7 3702094 3702093 + ORSgTEMT01601591 242 0.0003 (1/2996) 0 * * Os_TE_131381 Chr7 3691135 3691136 - TNR2A 152 0.0187 (56/2992) 0 * * Os_TE_131373 Chr7 3687680 3687681 - INDITTO 263 0.0396 (118/2981) 0 * Os_TE_131372 Os_TE_131372 Chr7 3687678 3687677 + INDITTO 263 0.0398 (119/2988) 0 * Os_TE_131373 Os_TE_131325 Chr7 3668106 3668107 - RIREX_LTR 8828 0.0003 (1/2973) 0 * Os_TE_131324 Os_TE_131324 Chr7 3668102 3668101 + RIREX_LTR 8828 0.0003 (1/2969) 0 * Os_TE_131325 Os_TE_131323 Chr7 3667881 3667882 + ORSgTEMT00501376 147 0.0032 (9/2839) 0 * * Os_TE_131274 Chr7 3651239 3651240 - SC-3_LTR 5748 0.0003 (1/2958) 0 * Os_TE_131273 Os_TE_131273 Chr7 3651235 3651234 + ORSiTERTOOT00296 5553 0.0003 (1/2966) 0 * Os_TE_131274 Os_TE_131269 Chr7 3647793 3647794 - SC-8_LTR 4951 0.0003 (1/2985) 0 * Os_TE_131268 Os_TE_131268 Chr7 3647789 3647788 + SC-8_LTR 4951 0.0003 (1/2986) 0 * Os_TE_131269 Os_TE_131266 Chr7 3646960 3646961 - SC-3_LTR 5748 0.0003 (1/2971) 0 * Os_TE_131265 Os_TE_131265 Chr7 3646956 3646955 + ORSiTERTOOT00296 5553 0.0003 (1/2977) 0 * Os_TE_131266 Os_TE_131195 Chr7 3609649 3609650 - AMYLTP 383 0.0013 (4/2979) 0 * Os_TE_131194 Os_TE_131194 Chr7 3609641 3609640 + AMYLTP 383 0.0010 (3/2980) 0 * Os_TE_131195 Os_TE_131185 Chr7 3604754 3604755 - SC-3_LTR 5748 0.0047 (14/2987) 0 * Os_TE_131184 Os_TE_131184 Chr7 3604750 3604749 + ORSiTERTOOT00296 5553 0.0044 (13/2986) 0 * Os_TE_131185 Os_TE_131183 Chr7 3603909 3603910 - RETRO2_LTR 12874 0.0743 (221/2973) 0 * Os_TE_131182 Os_TE_131182 Chr7 3603905 3603904 + RETRO2_LTR 12874 0.0689 (204/2962) 0 * Os_TE_131183 Os_TE_131180 Chr7 3600573 3600574 - ORSgTEMT00502258 148 0.0014 (4/2761) 0 * * Os_TE_131173 Chr7 3597337 3597338 + SC-8_LTR 4951 0.0003 (1/2981) 0 * Os_TE_131172 Os_TE_131172 Chr7 3597333 3597332 - SC-8_LTR 4951 0.0003 (1/2988) 0 * Os_TE_131173 Os_TE_131170 Chr7 3594358 3594357 + ORSgTETNOOT00908 242 0.5214 (1562/2996) 0 * * Os_TE_131150 Chr7 3581896 3581550 + NDNA2TNA_OS 346 0.5208 (1553/2982) 1 Intact Os_TE_131147 Os_TE_131147 Chr7 3581550 3581896 - NDNA2TNA_OS 346 0.5206 (1557/2991) 1 Intact Os_TE_131150 Os_TE_131099 Chr7 3552373 3552374 + ORSgTEMT01702031 156 0.0011 (3/2630) 0 * * Os_TE_130991 Chr7 3504445 3504446 - RETRO1_LTR 8314 0.0014 (4/2797) 0 * * Os_TE_130984 Chr7 3502251 3502252 - NDNA1TNA_OS 334 0.0004 (1/2816) 0 * * Os_TE_130980 Chr7 3501857 3501858 + AMYLTP 383 0.0622 (161/2589) 0 * * Os_TE_130978 Chr7 3501302 3501303 + SPMLIKE 10989 0.0003 (1/2987) 0 * Os_TE_130977 Os_TE_130977 Chr7 3501300 3501299 - ORSgTETN00200001 10994 0.0003 (1/2969) 0 * Os_TE_130978 Os_TE_130961 Chr7 3491822 3491821 - ORSgTEMT01601208 238 0.0010 (3/2990) 0 * * Os_TE_130960 Chr7 3491819 3491820 + ORSgTEMT01601787 220 0.0007 (2/2992) 0 * Os_TE_130959 Os_TE_130959 Chr7 3491815 3491814 - ORSgTEMT01600223 220 0.0010 (3/2991) 0 * Os_TE_130960 Os_TE_130957 Chr7 3491495 3491496 - MPING 430 0.0003 (1/2985) 0 * Os_TE_130956 Os_TE_130956 Chr7 3491493 3491492 + MPING 430 0.0003 (1/2984) 0 * Os_TE_130957 Os_TE_130949 Chr7 3489575 3489576 + ORSgTETNOOT00908 242 0.0592 (176/2975) 0 * * Os_TE_130948 Chr7 3485455 3485456 - MUDRN2_OS 756 0.0010 (3/2986) 0 * Os_TE_130947 Os_TE_130947 Chr7 3485447 3485446 - MUDRN3_OS 903 0.0010 (3/2988) 0 * Os_TE_130948 Os_TE_130944 Chr7 3483310 3483311 + ORSiTERTOOT00381 4988 0.0003 (1/2994) 0 * Os_TE_130943 Os_TE_130943 Chr7 3483306 3483305 - SC-8_LTR 4951 0.0003 (1/2993) 0 * Os_TE_130944 Os_TE_130931 Chr7 3479285 3479286 + MDR2 6967 0.0017 (5/2968) 0 * Os_TE_130930 Os_TE_130930 Chr7 3479276 3479275 - MDR2 6967 0.0010 (3/2968) 0 * Os_TE_130931 Os_TE_130926 Chr7 3471649 3471650 - ORSiTERTOOT00427 5125 0.0017 (5/2991) 0 * * Os_TE_130922 Chr7 3469266 3469267 - MPING 430 0.0003 (1/2995) 0 * Os_TE_130921 Os_TE_130921 Chr7 3469264 3469263 + MPING 430 0.0004 (1/2722) 0 * Os_TE_130922 Os_TE_130900 Chr7 3461683 3461682 - MUDRN3_OS 903 0.0017 (5/2987) 0 * * Os_TE_130895 Chr7 3459018 3459017 - SZ-67LTR 1540 0.4670 (1387/2970) 0 * * Os_TE_130877 Chr7 3450498 3450916 + ORSgTEMT00300069 394 0.4931 (1432/2904) 1 Intact * Os_TE_130869 Chr7 3443929 3443930 - SC-3_LTR 5748 0.0010 (3/2998) 0 * Os_TE_130868 Os_TE_130868 Chr7 3443925 3443924 + ORSiTERTOOT00296 5553 0.0010 (3/2997) 0 * Os_TE_130869 Os_TE_130865 Chr7 3439120 3439121 - SC-8_LTR 4951 0.0074 (22/2982) 0 * Os_TE_130864 Os_TE_130864 Chr7 3439116 3439115 + ORSiTERTOOT00381 4988 0.0077 (23/2983) 0 * Os_TE_130865 Os_TE_130863 Chr7 3439002 3439003 + ORSiTERTOOT00296 5553 0.0003 (1/2996) 0 * Os_TE_130862 Os_TE_130862 Chr7 3438998 3438997 - SC-3_LTR 5748 0.0003 (1/2996) 0 * Os_TE_130863 Os_TE_130831 Chr7 3423337 3423338 + ORSiTERTOOT00296 5553 0.0013 (4/2987) 0 * Os_TE_130830 Os_TE_130830 Chr7 3423333 3423332 - SC-3_LTR 5748 0.0013 (4/2980) 0 * Os_TE_130831 Os_TE_130788 Chr7 3397648 3397649 - SC-3_LTR 5748 0.0003 (1/2991) 0 * Os_TE_130787 Os_TE_130787 Chr7 3397644 3397643 + ORSiTERTOOT00296 5553 0.0003 (1/2991) 0 * Os_TE_130788 Os_TE_130784 Chr7 3395255 3395256 - SC-8_LTR 4951 0.0064 (19/2969) 0 * Os_TE_130783 Os_TE_130783 Chr7 3395251 3395250 + SC-8_LTR 4951 0.0064 (19/2968) 0 * Os_TE_130784 Os_TE_130729 Chr7 3376102 3376103 - F569 228 0.0004 (1/2562) 0 * Os_TE_130728 Os_TE_130728 Chr7 3376100 3376099 + F569 228 0.0004 (1/2696) 0 * Os_TE_130729 Os_TE_130707 Chr7 3362871 3362872 - ORSiTERTOOT00402 2660 0.0027 (8/2981) 0 * Os_TE_130706 Os_TE_130706 Chr7 3362867 3362866 + ORSiTERTOOT00402 2660 0.0030 (9/2979) 0 * Os_TE_130707 Os_TE_130691 Chr7 3353577 3353576 + ORSgTEMT00700017 386 0.0003 (1/2962) 0 * * Os_TE_130687 Chr7 3351380 3351381 + COPI2_LTR 4733 0.0007 (2/2945) 0 * Os_TE_130686 Os_TE_130686 Chr7 3351376 3351375 - COPI2_LTR 4733 0.0007 (2/2955) 0 * Os_TE_130687 Os_TE_130683 Chr7 3350047 3350048 + TRUNCATOR 2918 0.0010 (3/2888) 0 * * Os_TE_130681 Chr7 3350018 3350017 - RIREX_LTR 8828 0.0003 (1/2914) 0 * * Os_TE_130680 Chr7 3349577 3349578 - MPING 430 0.0003 (1/2967) 0 * Os_TE_130679 Os_TE_130679 Chr7 3349575 3349574 + MPING 430 0.0003 (1/2955) 0 * Os_TE_130680 Os_TE_130671 Chr7 3347563 3347787 - ORSgTEMT00900864 217 0.3997 (1195/2990) 1 Intact * Os_TE_130665 Chr7 3344509 3344510 + ORSgTEMT00300069 394 0.6124 (1694/2766) 0 * Os_TE_130664 Os_TE_130664 Chr7 3344507 3344506 + ORSgTEMT00300093 396 0.6244 (1782/2854) 0 * Os_TE_130665 Os_TE_130582 Chr7 3300452 3300453 + AMYLTP 383 0.0014 (4/2951) 0 * * Os_TE_130564 Chr7 3288257 3288258 - BUHUI 375 0.0013 (4/2982) 0 * Os_TE_130563 Os_TE_130563 Chr7 3288255 3288254 + BUHUI 375 0.0013 (4/2985) 0 * Os_TE_130564 Os_TE_130525 Chr7 3268064 3268063 + RPO_OS 1983 0.5727 (1445/2523) 0 * Os_TE_130524 Os_TE_130524 Chr7 3268063 3268064 - RPO_OS 1983 0.5877 (1495/2544) 0 * Os_TE_130525 Os_TE_130519 Chr7 3266411 3266412 - RIREX_LTR 8828 0.0010 (3/2925) 0 * Os_TE_130518 Os_TE_130518 Chr7 3266407 3266406 + RIREX_LTR 8828 0.0007 (2/2919) 0 * Os_TE_130519 Os_TE_130517 Chr7 3266241 3266242 - RMU2A1C 1169 0.0003 (1/2903) 0 * * Os_TE_130491 Chr7 3258233 3258234 - MPING 430 0.0122 (32/2629) 0 * Os_TE_130490 Os_TE_130490 Chr7 3258231 3258230 + MPING 430 0.0132 (36/2724) 0 * Os_TE_130491 Os_TE_130486 Chr7 3257499 3257500 + ORSgTETNOOT00686 140 0.0017 (5/2891) 0 * * Os_TE_130484 Chr7 3255034 3255035 - COPI2_LTR 4733 0.0013 (4/2991) 0 * Os_TE_130483 Os_TE_130483 Chr7 3255030 3255029 + COPI2_LTR 4733 0.0013 (4/2991) 0 * Os_TE_130484 Os_TE_130481 Chr7 3252702 3252703 + RIRE5-LTR_OS 6427 0.0010 (3/2997) 0 * Os_TE_130480 Os_TE_130480 Chr7 3252698 3252697 - SZ-14LTR 1193 0.0013 (4/2997) 0 * Os_TE_130481 Os_TE_130466 Chr7 3247551 3247552 - INDITTO 263 0.0007 (2/2887) 0 * * Os_TE_130451 Chr7 3239219 3239220 - ORSiTERTOOT00074 4935 0.0003 (1/2967) 0 * Os_TE_130450 Os_TE_130450 Chr7 3239215 3239214 + ORSiTERTOOT00074 4935 0.0003 (1/2966) 0 * Os_TE_130451 Os_TE_130449 Chr7 3237812 3237813 + COPI2_LTR 4733 0.0204 (60/2939) 0 * * Os_TE_130412 Chr7 3210522 3210523 - SC-3_LTR 5748 0.0003 (1/2986) 0 * Os_TE_130411 Os_TE_130411 Chr7 3210518 3210517 + ORSiTERTOOT00296 5553 0.0003 (1/2988) 0 * Os_TE_130412 Os_TE_130408 Chr7 3208006 3208007 - SC-3_LTR 5748 0.0003 (1/2972) 0 * Os_TE_130407 Os_TE_130407 Chr7 3208002 3208001 + ORSiTERTOOT00296 5553 0.0003 (1/2979) 0 * Os_TE_130408 Os_TE_130374 Chr7 3195541 3195542 - COPI2_LTR 4733 0.0003 (1/2994) 0 * * Os_TE_130372 Chr7 3193551 3193552 - COPI2_LTR 4733 0.0007 (2/2876) -1 * Os_TE_130371 Os_TE_130371 Chr7 3193547 3193546 + COPI2_LTR 4733 0.0010 (3/2906) -1 * Os_TE_130372 Os_TE_130343 Chr7 3181863 3181089 - MUDRN1_OS 764 0.0602 (176/2925) 1 Intact Os_TE_130342 Os_TE_130342 Chr7 3181089 3181863 + MUDRN1_OS 764 0.0582 (171/2936) 1 Intact Os_TE_130343 Os_TE_130296 Chr7 3172515 3172514 - SZ-22_LTR 4403 0.0264 (7/265) 0 * * Os_TE_130271 Chr7 3166017 3166018 + COPIA2-LTR_OS 6433 0.0013 (4/2979) 0 * * Os_TE_130257 Chr7 3160786 3157193 - ORSiTETNOOT00200 3563 0.0603 (162/2687) 1 Intact Os_TE_130255 Os_TE_130255 Chr7 3157193 3160784 + TWIFBIG 3567 0.0229 (46/2013) 1 Intact Os_TE_130257 Os_TE_130230 Chr7 3146108 3146107 + COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * * Os_TE_130199 Chr7 3137051 3137052 + OSTE15 1168 0.0010 (3/2962) 0 * * Os_TE_130196 Chr7 3136489 3136490 - ORSgTEMT00501255 146 0.0003 (1/2972) 0 * * Os_TE_130189 Chr7 3135203 3135204 - ORSgTEMT00901138 254 0.0003 (1/2949) 0 * * Os_TE_130174 Chr7 3133449 3133448 + RETROSOR2_LTR 11699 0.0017 (5/2967) 0 * * Os_TE_130128 Chr7 2983125 2983124 + CLOUD 734 0.0017 (5/2974) 0 * * Os_TE_130127 Chr7 2983047 2983048 - INDITTO 263 0.0010 (3/2977) 0 * Os_TE_130126 Os_TE_130126 Chr7 2983045 2983044 + INDITTO 263 0.0010 (3/2971) 0 * Os_TE_130127 Os_TE_130111 Chr7 2978074 2978075 - ORSgTEMT00600085 364 0.0017 (5/2948) 0 * * Os_TE_130109 Chr7 2977581 2977580 + ORSgTEMT01701200 154 0.0003 (1/2939) 0 * * Os_TE_130059 Chr7 2956221 2956222 + RIREX_LTR 8828 0.0020 (6/2970) 0 * Os_TE_130058 Os_TE_130058 Chr7 2956217 2956216 - RIREX_LTR 8828 0.0020 (6/2972) 0 * Os_TE_130059 Os_TE_129995 Chr7 2933931 2933932 + TRUNCATOR 2918 0.0003 (1/2891) 0 * * Os_TE_129978 Chr7 2921428 2921427 - COPIA2-LTR_OS 6433 0.0007 (2/2987) 0 * * Os_TE_129922 Chr7 2890441 2890442 + ORSiTERTOOT00381 4988 0.0007 (2/2972) 0 * Os_TE_129921 Os_TE_129921 Chr7 2890437 2890436 - SC-8_LTR 4951 0.0007 (2/2978) 0 * Os_TE_129922 Os_TE_129898 Chr7 2880208 2880209 - MUDROS1 4932 0.0003 (1/2885) 0 * * Os_TE_129895 Chr7 2879333 2879334 - ORSgTEMT01600443 272 0.0021 (6/2805) 0 * * Os_TE_129887 Chr7 2876888 2876889 + ORSgTEMT00500201 140 0.0017 (5/2962) 0 * * Os_TE_129882 Chr7 2876405 2876404 - ORSgTEMT01602413 239 0.0013 (4/2973) 0 * * Os_TE_129879 Chr7 2875953 2875954 + GYPSY-B_LTR 7068 0.0017 (5/2916) 0 * Os_TE_129878 Os_TE_129878 Chr7 2875949 2875948 - GYPSY-B_LTR 7068 0.0017 (5/2922) 0 * Os_TE_129879 Os_TE_129876 Chr7 2875456 2875455 - ORSgTEMT01601493 303 0.0012 (3/2535) 0 * * Os_TE_129873 Chr7 2874263 2874264 + TREP220 109 0.0021 (6/2925) 0 * * Os_TE_129871 Chr7 2873652 2873651 + STOWAWAY51_OS 246 0.0017 (5/2965) 0 * Os_TE_129870 Os_TE_129870 Chr7 2873646 2873647 - STOWAWAY51_OS 246 0.0007 (2/2962) 0 * Os_TE_129871 Os_TE_129869 Chr7 2872173 2872174 + TWIFB1 3737 0.0003 (1/2964) 0 * * Os_TE_129847 Chr7 2865531 2865532 - GAIJIN 147 0.0017 (5/2954) 0 * Os_TE_129846 Os_TE_129846 Chr7 2865530 2865529 + ORSgTEMT00500560 148 0.0017 (5/2958) 0 * Os_TE_129847 Os_TE_129784 Chr7 2839305 2839306 + COPIA2-LTR_OS 6433 0.0003 (1/2981) 0 * Os_TE_129783 Os_TE_129783 Chr7 2839301 2839300 - COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * Os_TE_129784 Os_TE_129740 Chr7 2823190 2823191 + ORSgTEMT01602626 237 0.0008 (2/2664) 0 * * Os_TE_129710 Chr7 2799847 2799848 - SC-3_LTR 5748 0.0017 (5/2997) 0 * Os_TE_129709 Os_TE_129709 Chr7 2799843 2799842 + ORSiTERTOOT00296 5553 0.0017 (5/2984) 0 * Os_TE_129710 Os_TE_129702 Chr7 2794072 2794073 - ORSiTETNOOT00134 607 0.0003 (1/2907) 0 * Os_TE_129701 Os_TE_129701 Chr7 2794065 2794064 + TWIF 586 0.0003 (1/2934) 0 * Os_TE_129702 Os_TE_129673 Chr7 2770693 2770694 + RIREX_LTR 8828 0.0071 (21/2951) 0 * * Os_TE_129650 Chr7 2764239 2764240 + CACTA-B 1103 0.0017 (5/2991) 0 * * Os_TE_129620 Chr7 2749109 2749108 - ORSiTETNOOT00107 906 0.0013 (4/2989) 0 * Os_TE_129619 Os_TE_129619 Chr7 2749105 2749106 + ORSiTETNOOT00107 906 0.0010 (3/2988) 0 * Os_TE_129620 Os_TE_129598 Chr7 2746587 2746588 + STOWAWAY44_OS 240 0.0003 (1/2927) 0 * * Os_TE_129580 Chr7 2743047 2743048 - RIREX_LTR 8828 0.0007 (2/2973) 0 * Os_TE_129579 Os_TE_129579 Chr7 2743043 2743042 + RIREX_LTR 8828 0.0003 (1/2969) 0 * Os_TE_129580 Os_TE_129566 Chr7 2739977 2739978 + MPING 430 0.0004 (1/2832) 0 * Os_TE_129565 Os_TE_129565 Chr7 2739975 2739974 - MPING 430 0.0011 (3/2809) 0 * Os_TE_129566 Os_TE_129564 Chr7 2739970 2739971 + MPING 430 0.0010 (3/2860) 0 * Os_TE_129563 Os_TE_129563 Chr7 2739968 2739967 - MPING 430 0.0007 (2/2843) 0 * Os_TE_129564 Os_TE_129554 Chr7 2735867 2735866 + ORSgTEMT00502094 140 0.0003 (1/2974) 0 * * Os_TE_129547 Chr7 2733880 2733881 + NDNA1TNA_OS 334 0.0007 (2/2987) 0 * * Os_TE_129518 Chr7 2726658 2726659 - ORSgTEMT01600639 228 0.0013 (4/2993) 0 * * Os_TE_129517 Chr7 2726549 2726550 + TWIFBIG 3567 0.0007 (2/2995) 0 * * Os_TE_129510 Chr7 2723909 2723910 + RIRE3_LTR 12054 0.0007 (2/2994) 0 * * Os_TE_129486 Chr7 2717191 2717190 + RIREX_LTR 8828 0.0003 (1/2883) 0 * * Os_TE_129485 Chr7 2717092 2717093 - RIREX_LTR 8828 0.0003 (1/2925) 0 * * Os_TE_129446 Chr7 2706212 2706211 + TRUNCATOR 2918 0.0006 (1/1607) 0 * * Os_TE_129436 Chr7 2704006 2704005 + ORSgTEMT00101315 319 0.0003 (1/2891) 0 * * Os_TE_129435 Chr7 2703870 2704019 + ORSgTEMT00500512 153 0.5299 (1558/2940) 1 Intact * Os_TE_129433 Chr7 2703732 2703731 + ORSgTEMT00900471 260 0.4677 (1346/2878) 0 * * Os_TE_129424 Chr7 2702124 2702125 + ORSgTEMT04600010 284 0.4802 (1321/2751) 0 * * Os_TE_129407 Chr7 2700190 2700189 + ORSgTEMT01602181 239 0.4506 (1236/2743) 0 * Os_TE_129406 Os_TE_129406 Chr7 2700187 2700188 - ORSgTEMT01601493 303 0.4639 (1304/2811) 0 * Os_TE_129407 Os_TE_129405 Chr7 2699990 2699991 + INDITTO 263 0.0037 (6/1617) 0 * Os_TE_129404 Os_TE_129404 Chr7 2699986 2699985 - ORSgTEMT01400011 212 0.4410 (1237/2805) 0 * Os_TE_129405 Os_TE_129403 Chr7 2699980 2699981 - ORSgTEMT01400022 212 0.4817 (1433/2975) 0 * * Os_TE_129398 Chr7 2699094 2698676 + ORSgTEMT00300064 397 0.5302 (1570/2961) 1 Intact Os_TE_129396 Os_TE_129396 Chr7 2698665 2699079 + ORSiTEMT00300001 383 0.5342 (1570/2939) 1 Intact Os_TE_129398 Os_TE_129386 Chr7 2697503 2697504 + ORSgTEMT00500201 140 0.4868 (1436/2950) 0 * * Os_TE_129371 Chr7 2694947 2694948 - ORSgTEMT00900099 250 0.1160 (346/2983) 0 * * Os_TE_129370 Chr7 2694855 2694854 - ORSgTEMT00900145 249 0.5940 (1748/2943) 0 * * Os_TE_129368 Chr7 2694760 2694520 + ORSgTEMT01601525 239 0.4158 (1235/2970) 1 Intact * Os_TE_129351 Chr7 2686469 2686468 + ORSgTEMT01601591 242 0.0003 (1/2997) 0 * * Os_TE_129347 Chr7 2684661 2684662 + COPIA2-LTR_OS 6433 0.0007 (2/2964) 0 * Os_TE_129346 Os_TE_129346 Chr7 2684657 2684656 - COPIA2-LTR_OS 6433 0.0007 (2/2957) 0 * Os_TE_129347 Os_TE_129299 Chr7 2673338 2673339 + ORSgTEMT00901523 224 0.0007 (2/2902) 0 * * Os_TE_129291 Chr7 2672536 2672537 - ORSgTEMT02400246 177 0.0007 (2/2989) 0 * * Os_TE_129290 Chr7 2672205 2671971 + TESS 244 0.3624 (1083/2988) 1 Intact Os_TE_129289 Os_TE_129289 Chr7 2671971 2672205 - TESS 244 0.3551 (1054/2968) 1 Intact Os_TE_129290 Os_TE_129287 Chr7 2671766 2671424 + OLO24 345 0.4618 (1292/2798) 1 Intact * Os_TE_129270 Chr7 2669686 2669687 - RIREX_LTR 8828 0.0004 (1/2787) 0 * Os_TE_129269 Os_TE_129269 Chr7 2669682 2669681 + RIREX_LTR 8828 0.0004 (1/2783) 0 * Os_TE_129270 Os_TE_129268 Chr7 2669086 2669085 - STOWAWAY51_OS 246 0.0003 (1/2982) 0 * * Os_TE_129265 Chr7 2668686 2668687 - COPIA2-LTR_OS 6433 0.0003 (1/2982) 0 * Os_TE_129264 Os_TE_129264 Chr7 2668682 2668681 + COPIA2-LTR_OS 6433 0.0003 (1/2984) 0 * Os_TE_129265 Os_TE_129262 Chr7 2668647 2668648 + ORSgTEMT01601591 242 0.0003 (1/2983) 0 * * Os_TE_129245 Chr7 2662096 2662097 - SZ-22_LTR 4403 0.0003 (1/2938) 0 * Os_TE_129244 Os_TE_129244 Chr7 2662092 2662091 + ORSiTERTOOT00226 792 0.0003 (1/2955) 0 * Os_TE_129245 Os_TE_129224 Chr7 2657362 2657363 + ORSgTEMT01601591 242 0.0003 (1/2980) 0 * * Os_TE_129218 Chr7 2655494 2655495 - COPI2_LTR 4733 0.0007 (2/2949) 0 * Os_TE_129217 Os_TE_129217 Chr7 2655489 2655488 + COPI2_LTR 4733 0.0010 (3/2943) 0 * Os_TE_129218 Os_TE_129184 Chr7 2641208 2641207 - TNR2A 152 0.0048 (10/2099) 0 * * Os_TE_129171 Chr7 2627873 2633088 + SC-4_LTR 5218 0.3511 (1047/2982) 1 Intact * Os_TE_129156 Chr7 2622526 2622527 - RIREX_LTR 8828 0.5912 (1770/2994) 0 * Os_TE_129155 Os_TE_129155 Chr7 2622523 2622522 + RIREX_LTR 8828 0.5824 (1724/2960) 0 * Os_TE_129156 Os_TE_129144 Chr7 2621143 2621144 + COPI2_LTR 4733 0.0003 (1/2975) 0 * Os_TE_129143 Os_TE_129143 Chr7 2621139 2621138 - COPI2_LTR 4733 0.0003 (1/2978) 0 * Os_TE_129144 Os_TE_129139 Chr7 2620684 2620683 - COPI2_LTR 4733 0.0007 (2/2977) 0 * * Os_TE_129130 Chr7 2618775 2618776 + CACTA-H 1152 0.5837 (1708/2926) 0 * Os_TE_129129 Os_TE_129129 Chr7 2618773 2618772 - CACTA-H 1152 0.5858 (1711/2921) 0 * Os_TE_129130 Os_TE_129127 Chr7 2617676 2617677 - ORSiTERTOOT00074 4935 0.0003 (1/2928) 0 * Os_TE_129126 Os_TE_129126 Chr7 2617672 2617671 + ORSiTERTOOT00074 4935 0.0003 (1/2924) 0 * Os_TE_129127 Os_TE_129111 Chr7 2612158 2611149 + RETRO2_LTR 12874 0.3754 (993/2645) 1 Solo_LTR Os_TE_129110 Os_TE_129110 Chr7 2611149 2612158 - RETRO2_LTR 12874 0.3886 (1038/2671) 1 Solo_LTR Os_TE_129111 Os_TE_129079 Chr7 2606518 2606517 - ORSgTEMT00700002 381 0.0013 (4/2964) 0 * Os_TE_129078 Os_TE_129078 Chr7 2606512 2606513 - ORSgTEMT00700002 381 0.0014 (4/2955) 0 * Os_TE_129079 Os_TE_129065 Chr7 2602122 2602123 + COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_129064 Os_TE_129064 Chr7 2602118 2602117 - COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_129065 Os_TE_129003 Chr7 2568111 2568112 + EnSpm-13_OS 11171 0.0018 (5/2771) 0 * Os_TE_129002 Os_TE_129002 Chr7 2568109 2568108 - EnSpm-13_OS 11171 0.0022 (6/2776) 0 * Os_TE_129003 Os_TE_128966 Chr7 2560001 2560002 - ORSgTEMT01601605 240 0.6698 (1913/2856) 0 * * Os_TE_128939 Chr7 2555768 2555767 + ORSgTEMT00500610 153 0.0003 (1/2947) 0 * * Os_TE_128923 Chr7 2554590 2554589 + OSTE14 885 0.0017 (5/2875) 0 * * Os_TE_128917 Chr7 2551702 2551703 - ORSgTEMT00501339 144 0.0017 (5/2878) 0 * Os_TE_128916 Os_TE_128916 Chr7 2551698 2551697 + ORSgTETNOOT00553 140 0.0003 (1/2892) 0 * Os_TE_128917 Os_TE_128900 Chr7 2539608 2539609 - SC-3_LTR 5748 0.0003 (1/2967) 0 * Os_TE_128899 Os_TE_128899 Chr7 2539604 2539603 + ORSiTERTOOT00296 5553 0.0003 (1/2971) 0 * Os_TE_128900 Os_TE_128873 Chr7 2526269 2526268 - COPIA2-LTR_OS 6433 0.0003 (1/2982) 0 * * Os_TE_128865 Chr7 2524203 2524202 - SZ-25LTR 330 0.0003 (1/2995) 0 * * Os_TE_128845 Chr7 2514196 2514195 - MPING 430 0.0003 (1/2967) 0 * * Os_TE_128821 Chr7 2502173 2496901 + ORSiTERTOOT00350 5275 0.3946 (1024/2595) 1 Intact Os_TE_128820 Os_TE_128820 Chr7 2496901 2502173 - ORSiTERTOOT00350 5275 0.3644 (967/2654) 1 Intact Os_TE_128821 Os_TE_128793 Chr7 2486686 2486687 - INDITTO 263 0.0039 (7/1777) 0 * Os_TE_128792 Os_TE_128792 Chr7 2486684 2486683 + INDITTO 263 0.0067 (7/1038) 0 * Os_TE_128793 Os_TE_128790 Chr7 2486533 2486532 + INDITTO 263 0.0038 (4/1050) 0 * * Os_TE_128789 Chr7 2486461 2486462 + ORSgTEMT01601122 212 0.0014 (2/1476) 0 * * Os_TE_128765 Chr7 2482621 2482620 + EnSpm-14_OS 11216 0.0030 (9/2963) 0 * * Os_TE_128749 Chr7 2480048 2480049 - COPI2_LTR 4733 0.0013 (4/2977) 0 * Os_TE_128748 Os_TE_128748 Chr7 2480044 2480043 + COPI2_LTR 4733 0.0017 (5/2973) 0 * Os_TE_128749 Os_TE_128727 Chr7 2468934 2468935 - SC-3_LTR 5748 0.0020 (6/2986) 0 * * Os_TE_128720 Chr7 2463625 2463626 + TWIFB1 3737 0.0030 (9/2973) 0 * * Os_TE_128709 Chr7 2458522 2458523 + COPI2_LTR 4733 0.0509 (152/2989) 0 * Os_TE_128708 Os_TE_128708 Chr7 2458518 2458517 - COPI2_LTR 4733 0.0515 (154/2993) 0 * Os_TE_128709 Os_TE_128701 Chr7 2451071 2451072 - COPIA2-LTR_OS 6433 0.0003 (1/2969) 0 * Os_TE_128700 Os_TE_128700 Chr7 2451067 2451066 + COPIA2-LTR_OS 6433 0.0003 (1/2984) 0 * Os_TE_128701 Os_TE_128661 Chr7 2439673 2439867 + ORSgTEMT06000207 188 0.4815 (896/1861) 1 Intact * Os_TE_128626 Chr7 2419426 2419427 + RETROSAT4_LTR 13504 0.5599 (1113/1988) 0 * * Os_TE_128580 Chr7 2411185 2411186 - RIREX_LTR 8828 0.0019 (2/1048) 0 * Os_TE_128579 Os_TE_128579 Chr7 2411181 2411180 + RIREX_LTR 8828 0.0019 (2/1037) 0 * Os_TE_128580 Os_TE_128513 Chr7 2378129 2378130 + SPMLIKE 10989 0.0020 (2/1025) 0 * * Os_TE_128510 Chr7 2377336 2377335 + OSTONOR1_LTR 6440 0.0010 (1/1020) 0 * * Os_TE_128509 Chr7 2376997 2376998 - TYPEU1 380 0.0034 (2/589) 0 * * Os_TE_128449 Chr7 2351742 2351741 + SINE9_OS 293 0.0010 (1/1013) 0 * * Os_TE_128408 Chr7 2344466 2344467 - HATOS1 3488 0.0007 (2/2948) 0 * Os_TE_128407 Os_TE_128407 Chr7 2344459 2344458 + QINNIU 528 0.0007 (2/2951) 0 * Os_TE_128408 Os_TE_128374 Chr7 2335059 2335058 - SZ-35LTR 3853 0.0007 (2/2743) 0 * * Os_TE_128373 Chr7 2334323 2334324 - SUSU 279 0.0007 (2/2972) 0 * * Os_TE_128372 Chr7 2334307 2334308 + CASTAWAY 364 0.0017 (5/2985) 0 * * Os_TE_128316 Chr7 2313307 2313306 - TYPEM 227 0.0003 (1/2997) 0 * Os_TE_128315 Os_TE_128315 Chr7 2313306 2313307 - ORSgTEMT02400246 177 0.0003 (1/2996) 0 * Os_TE_128316 Os_TE_128312 Chr7 2311949 2311948 - STOWAWAY51_OS 246 0.0010 (3/2995) 0 * Os_TE_128311 Os_TE_128311 Chr7 2311946 2311947 - STOWAWAY51_OS 246 0.0013 (4/2992) 0 * Os_TE_128312 Os_TE_128308 Chr7 2308307 2308308 + SZ-52_LTR 13107 0.0092 (4/435) -1 * * Os_TE_128250 Chr7 2279018 2279019 + ORSgTETNOOT00908 242 0.0003 (1/2964) 0 * * Os_TE_128220 Chr7 2252765 2252766 - RETROSAT2LTR 12796 0.4990 (1492/2990) 0 * Os_TE_128219 Os_TE_128219 Chr7 2252763 2252762 + RETROSAT2LTR 12796 0.4847 (1424/2938) 0 * Os_TE_128220 Os_TE_128215 Chr7 2251664 2251663 + TREP215 239 0.3014 (475/1576) 0 * * Os_TE_128210 Chr7 2250988 2250989 + ORSgTEMT01602181 239 0.0003 (1/2992) 0 * * Os_TE_128209 Chr7 2250651 2250652 + MPING 430 0.0007 (2/2991) 0 * Os_TE_128208 Os_TE_128208 Chr7 2250649 2250648 - MPING 430 0.0007 (2/2994) 0 * Os_TE_128209 Os_TE_128182 Chr7 2243474 2243473 + ORSgTETNOOT00908 242 0.0032 (4/1242) 0 * * Os_TE_128146 Chr7 2237380 2237381 - TNR2A 152 0.0003 (1/2940) 0 * * Os_TE_128144 Chr7 2237280 2237281 - F569 228 0.0412 (122/2959) 0 * Os_TE_128143 Os_TE_128143 Chr7 2237278 2237277 + F569 228 0.0425 (125/2943) 0 * Os_TE_128144 Os_TE_128140 Chr7 2235723 2235722 + TRUNCATOR 2918 0.1099 (329/2993) 0 * Os_TE_128139 Os_TE_128139 Chr7 2235722 2235723 - TRUNCATOR 2918 0.0985 (292/2963) 0 * Os_TE_128140 Os_TE_128137 Chr7 2234875 2234876 - TNR2A 152 0.0017 (5/2996) 0 * * Os_TE_128119 Chr7 2224804 2224803 - RETROSAT4_LTR 13504 0.0004 (1/2538) 0 * * Os_TE_128097 Chr7 2208805 2208806 + SZ-55_LTR 10318 0.0003 (1/2998) 0 * Os_TE_128096 Os_TE_128096 Chr7 2208801 2208800 - SZ-55_LTR 10318 0.0003 (1/2997) 0 * Os_TE_128097 Os_TE_128092 Chr7 2206065 2206066 - COPIA2-LTR_OS 6433 0.0003 (1/2928) 0 * Os_TE_128091 Os_TE_128091 Chr7 2206061 2206060 + COPIA2-LTR_OS 6433 0.0003 (1/2918) 0 * Os_TE_128092 Os_TE_128065 Chr7 2195458 2195457 - ORSgTEMT01601432 239 0.0017 (5/2994) 0 * * Os_TE_128060 Chr7 2191519 2191518 - RPO_OS 1983 0.5440 (1613/2965) 0 * * Os_TE_128059 Chr7 2190703 2190704 - ORSgTETNOOT00754 253 0.5446 (1576/2894) 0 * * Os_TE_128055 Chr7 2189323 2189322 + ORSgTETNOOT00908 242 0.0198 (59/2981) 0 * * Os_TE_128054 Chr7 2189277 2189278 - RIREX_LTR 8828 0.0003 (1/2986) 0 * Os_TE_128053 Os_TE_128053 Chr7 2189273 2189272 + RIREX_LTR 8828 0.0003 (1/2975) 0 * Os_TE_128054 Os_TE_128049 Chr7 2189023 2189024 + ORSgTETNOOT00908 242 0.0191 (57/2987) 0 * * Os_TE_128048 Chr7 2186767 2186768 + COPI2_LTR 4733 0.0013 (4/2988) 0 * Os_TE_128047 Os_TE_128047 Chr7 2186763 2186762 - COPI2_LTR 4733 0.0010 (3/2987) 0 * Os_TE_128048 Os_TE_128021 Chr7 2178582 2178583 + SZ-48LTR 3632 0.0204 (61/2995) 0 * Os_TE_128020 Os_TE_128020 Chr7 2178578 2178577 - SZ-48LTR 3632 0.0187 (56/2993) 0 * Os_TE_128021 Os_TE_128017 Chr7 2176595 2176594 - STOWAWAY44_OS 240 0.0017 (5/2972) 0 * Os_TE_128016 Os_TE_128016 Chr7 2176592 2176593 + STOWAWAY44_OS 240 0.0017 (5/2977) 0 * Os_TE_128017 Os_TE_128000 Chr7 2169433 2169434 - ORSgTETNOOT00754 253 0.0004 (1/2834) 0 * Os_TE_127999 Os_TE_127999 Chr7 2169431 2169430 + ORSgTETNOOT01834 251 0.0003 (1/2986) 0 * Os_TE_128000 Os_TE_127995 Chr7 2169269 2169270 - ORSgTEMT00600085 364 0.0003 (1/2996) 0 * * Os_TE_127992 Chr7 2167946 2167945 + ORSgTEMT01600662 238 0.0528 (158/2990) 0 * Os_TE_127991 Os_TE_127991 Chr7 2167943 2167944 - TREP215 239 0.0546 (163/2987) 0 * Os_TE_127992 Os_TE_127986 Chr7 2161149 2161150 + ORSgTEMT03000039 377 0.0559 (167/2990) 0 * Os_TE_127985 Os_TE_127985 Chr7 2161141 2161140 - ORSgTEMT03000007 372 0.0559 (167/2988) 0 * Os_TE_127986 Os_TE_127984 Chr7 2161090 2161091 - RIRE3A_LTR 10580 0.0003 (1/2995) 0 * Os_TE_127983 Os_TE_127983 Chr7 2161086 2161085 + ORSiTERTOOT00027 10853 0.0003 (1/2996) 0 * Os_TE_127984 Os_TE_127979 Chr7 2158463 2158464 + ORSiTERTOOT00296 5553 0.0010 (3/2991) 0 * Os_TE_127978 Os_TE_127978 Chr7 2158459 2158458 - SC-3_LTR 5748 0.0010 (3/2986) 0 * Os_TE_127979 Os_TE_127975 Chr7 2157329 2157330 - MERMITED 1572 0.0017 (5/2962) 0 * Os_TE_127974 Os_TE_127974 Chr7 2157324 2157323 + MERMITEA 1710 0.0017 (5/2965) 0 * Os_TE_127975 Os_TE_127973 Chr7 2156373 2156374 + COPI2_LTR 4733 0.0004 (1/2829) 0 * Os_TE_127972 Os_TE_127972 Chr7 2156369 2156368 - COPI2_LTR 4733 0.0004 (1/2828) 0 * Os_TE_127973 Os_TE_127968 Chr7 2153935 2153934 - ORSgTEMT01701705 154 0.0004 (1/2844) 0 * * Os_TE_127962 Chr7 2152766 2152765 - AMYLTP 383 0.0010 (3/2913) 0 * * Os_TE_127959 Chr7 2149689 2149688 - ORSiTERTOOT00402 2660 0.0020 (6/2992) 0 * * Os_TE_127958 Chr7 2149291 2149292 + SC-8_LTR 4951 0.0013 (4/2994) 0 * Os_TE_127957 Os_TE_127957 Chr7 2149287 2149286 - SC-8_LTR 4951 0.0013 (4/2995) 0 * Os_TE_127958 Os_TE_127932 Chr7 2138696 2138697 - COPIA2-LTR_OS 6433 0.0003 (1/2955) 0 * * Os_TE_127921 Chr7 2130405 2130404 - ORSgTEMT01400014 209 0.0003 (1/2967) 0 * Os_TE_127920 Os_TE_127920 Chr7 2130404 2130405 + STOWAWAY9_OS 235 0.0003 (1/2967) 0 * Os_TE_127921 Os_TE_127897 Chr7 2125717 2125718 + ORSgTEMT01601122 212 0.0010 (3/2980) 0 * * Os_TE_127894 Chr7 2124607 2124608 + COPIA2-LTR_OS 6433 0.0003 (1/2937) 0 * * Os_TE_127884 Chr7 2122966 2118387 - MuDR3_OS 8604 0.3399 (980/2883) 1 Intact Os_TE_127880 Os_TE_127880 Chr7 2118383 2122966 + MuDR3_OS 8604 0.2933 (783/2670) 1 Intact Os_TE_127884 Os_TE_127869 Chr7 2114150 2114151 - TRUNCATOR2_LTR 2904 0.0127 (38/2993) 0 * Os_TE_127868 Os_TE_127868 Chr7 2114146 2114145 + TRUNCATOR2_LTR 2904 0.0124 (37/2993) 0 * Os_TE_127869 Os_TE_127867 Chr7 2113312 2113313 + RIRE5-LTR_OS 6427 0.4990 (1485/2976) 0 * * Os_TE_127825 Chr7 2098130 2098131 + RIREX_LTR 8828 0.0003 (1/2984) 0 * * Os_TE_127806 Chr7 2092220 2092221 + ORSgTEMT00500512 153 0.0003 (1/2969) 0 * * Os_TE_127801 Chr7 2089360 2089361 + ORSgTEMT01700044 149 0.0019 (5/2660) 0 * * Os_TE_127798 Chr7 2088556 2088557 - MUDRN1_OS 764 0.0003 (1/2989) 0 * Os_TE_127797 Os_TE_127797 Chr7 2088548 2088547 + MUDRN1_OS 764 0.0003 (1/2989) 0 * Os_TE_127798 Os_TE_127792 Chr7 2084206 2084205 - OSLINE1_1 4159 0.0003 (1/2963) 0 * * Os_TE_127782 Chr7 2079828 2079829 - ORSgTEMT01601834 234 0.0006 (1/1716) 0 * * Os_TE_127769 Chr7 2078467 2078466 - COPI2_LTR 4733 0.0020 (6/2985) 0 * * Os_TE_127768 Chr7 2078143 2078144 + RETROSAT2LTRA 3112 0.0003 (1/2989) 0 * Os_TE_127767 Os_TE_127767 Chr7 2078139 2078138 - RETROSAT3_LTR 11537 0.0003 (1/2990) 0 * Os_TE_127768 Os_TE_127762 Chr7 2076958 2076959 - OSTE20 496 0.0024 (7/2966) 0 * Os_TE_127761 Os_TE_127761 Chr7 2076954 2076953 + OSTE20 496 0.0024 (7/2949) 0 * Os_TE_127762 Os_TE_127756 Chr7 2073574 2073575 - CLOUD 734 0.0003 (1/2983) 0 * Os_TE_127755 Os_TE_127755 Chr7 2073566 2073565 - CLOUD 734 0.0003 (1/2987) 0 * Os_TE_127756 Os_TE_127752 Chr7 2072006 2072005 + COPIA2-LTR_OS 6433 0.0033 (10/2996) 0 * * Os_TE_127749 Chr7 2070205 2070206 - ORSiTERTOOT00367 5639 0.0289 (86/2977) 0 * Os_TE_127748 Os_TE_127748 Chr7 2070201 2070200 + ORSiTERTOOT00367 5639 0.0292 (87/2976) 0 * Os_TE_127749 Os_TE_127747 Chr7 2070154 2070155 - COPI2_LTR 4733 0.0010 (3/2970) 0 * Os_TE_127746 Os_TE_127746 Chr7 2070150 2070149 + COPI2_LTR 4733 0.0010 (3/2966) 0 * Os_TE_127747 Os_TE_127742 Chr7 2069351 2069352 + RETROSAT2LTR 12796 0.0003 (1/2996) 0 * Os_TE_127741 Os_TE_127741 Chr7 2069349 2069348 - RETROSAT2LTR 12796 0.0003 (1/2993) 0 * Os_TE_127742 Os_TE_127707 Chr7 2054288 2054289 - MuDR3_OS 8604 0.0140 (42/2995) 0 * Os_TE_127706 Os_TE_127706 Chr7 2054280 2054279 + MuDR3_OS 8604 0.0137 (41/2995) 0 * Os_TE_127707 Os_TE_127681 Chr7 2046128 2046127 - RIREX_LTR 8828 0.0003 (1/2882) 0 * * Os_TE_127669 Chr7 2044232 2044233 + SZ-62LTR 3649 0.0003 (1/2910) 0 * Os_TE_127668 Os_TE_127668 Chr7 2044228 2044227 - SZ-62LTR 3649 0.0003 (1/2895) 0 * Os_TE_127669 Os_TE_127665 Chr7 2042689 2042690 + TRUNCATOR2_LTR 2904 0.0945 (281/2975) 0 * Os_TE_127664 Os_TE_127664 Chr7 2042685 2042684 - TRUNCATOR2_LTR 2904 0.1927 (300/1557) 0 * Os_TE_127665 Os_TE_127654 Chr7 2038036 2038037 + RIREX_LTR 8828 0.0007 (2/2998) 0 * Os_TE_127653 Os_TE_127653 Chr7 2038032 2038031 - RIREX_LTR 8828 0.0007 (2/2996) 0 * Os_TE_127654 Os_TE_127647 Chr7 2035058 2035057 + SC-1_LTR 6888 0.0013 (4/2993) 0 * * Os_TE_127641 Chr7 2031733 2031734 + SZ-4_LTR 5991 0.0013 (4/2989) 0 * Os_TE_127640 Os_TE_127640 Chr7 2031729 2031728 - SZ-4_LTR 5991 0.0013 (4/2989) 0 * Os_TE_127641 Os_TE_127627 Chr7 2026101 2026102 + TRUNCATOR 2918 0.0003 (1/2967) 0 * * Os_TE_127603 Chr7 2017563 2017562 - SEVERIN-2 1952 0.0044 (13/2932) 0 * * Os_TE_127599 Chr7 2017074 2017075 - ORSgTEMT01600520 239 0.0003 (1/2925) 0 * * Os_TE_127596 Chr7 2016519 2016520 - OLO24 345 0.0003 (1/2972) 0 * Os_TE_127595 Os_TE_127595 Chr7 2016517 2016516 + OLO24 345 0.0003 (1/2973) 0 * Os_TE_127596 Os_TE_127589 Chr7 2014631 2014632 + STOWAWAY51_OS 246 0.0007 (2/2950) 0 * * Os_TE_127588 Chr7 2014238 2014239 - ORSgTETNOOT00754 253 0.4075 (1213/2977) 0 * Os_TE_127587 Os_TE_127587 Chr7 2014236 2014235 + ORSgTETNOOT00754 253 0.4104 (1225/2985) 0 * Os_TE_127588 Os_TE_127586 Chr7 2014159 2014160 - INDITTO 263 0.1018 (300/2946) 0 * Os_TE_127585 Os_TE_127585 Chr7 2014157 2014156 - ORSgTETNOOT00534 256 0.1012 (300/2965) 0 * Os_TE_127586 Os_TE_127580 Chr7 2013743 2013742 + STOWAWAY51_OS 246 0.0044 (13/2944) 0 * * Os_TE_127579 Chr7 2013740 2013741 - ORSgTEMT02400246 177 0.0986 (292/2960) 0 * * Os_TE_127542 Chr7 1995154 1995155 - SC-8_LTR 4951 0.0034 (10/2967) 0 * Os_TE_127541 Os_TE_127541 Chr7 1995150 1995149 + SC-8_LTR 4951 0.0034 (10/2962) 0 * Os_TE_127542 Os_TE_127540 Chr7 1994494 1994495 - SZ-22_LTR 4403 0.0003 (1/2989) 0 * * Os_TE_127518 Chr7 1987645 1987644 + COPIA1-LTR_OS 9292 0.0017 (5/2980) 0 * * Os_TE_127508 Chr7 1983652 1980268 + SZ-40LTR 2465 0.4644 (1383/2978) 0.88 Intact * Os_TE_127493 Chr7 1976877 1976878 - RETROSAT2LTRA 3112 0.5241 (1556/2969) 0 * Os_TE_127492 Os_TE_127492 Chr7 1976873 1976872 + RETROSAT2LTRA 3112 0.5257 (1566/2979) 0 * Os_TE_127493 Os_TE_127473 Chr7 1970935 1970934 + MERMITEB 1610 0.0010 (3/2962) 0 * * Os_TE_127466 Chr7 1968105 1968104 + NDNA1TNA_OS 334 0.0007 (2/2722) 0 * * Os_TE_127458 Chr7 1966541 1966542 + AMYLTP 383 0.5397 (1592/2950) 0 * * Os_TE_127452 Chr7 1962978 1962979 - SC-8_LTR 4951 0.0003 (1/2975) 0 * Os_TE_127451 Os_TE_127451 Chr7 1962974 1962973 + SC-8_LTR 4951 0.0003 (1/2975) 0 * Os_TE_127452 Os_TE_127398 Chr7 1928102 1928101 + ORSgTETN00200005 1121 0.0015 (4/2739) 0 * * Os_TE_127375 Chr7 1920225 1920226 - COPIA2-LTR_OS 6433 0.0004 (1/2673) 0 * Os_TE_127374 Os_TE_127374 Chr7 1920221 1920220 + COPIA2-LTR_OS 6433 0.0004 (1/2674) 0 * Os_TE_127375 Os_TE_127372 Chr7 1919645 1919646 - COPIA2-LTR_OS 6433 0.0004 (1/2638) 0 * * Os_TE_127356 Chr7 1914516 1914517 + AMYLTP 383 0.5715 (1542/2698) 0 * * Os_TE_127343 Chr7 1910922 1910921 + STOWAWAY51_OS 246 0.0004 (1/2709) 0 * Os_TE_127342 Os_TE_127342 Chr7 1910916 1910917 + ORSgTEMT01601591 242 0.0003 (1/2930) 0 * Os_TE_127343 Os_TE_127243 Chr7 1876955 1876954 - OSMAR1 5265 0.0177 (26/1471) 0 * Os_TE_127242 Os_TE_127242 Chr7 1876952 1876953 + OSMAR1 5265 0.0191 (28/1468) 0 * Os_TE_127243 Os_TE_127198 Chr7 1863805 1863806 - SC-8_LTR 4951 0.0003 (1/2983) 0 * Os_TE_127197 Os_TE_127197 Chr7 1863801 1863800 + SC-8_LTR 4951 0.0003 (1/2984) 0 * Os_TE_127198 Os_TE_127189 Chr7 1855483 1855482 - RIREX_LTR 8828 0.0003 (1/2991) 0 * * Os_TE_127187 Chr7 1853919 1853920 - SC-3_LTR 5748 0.0010 (3/2980) 0 * Os_TE_127186 Os_TE_127186 Chr7 1853915 1853914 + ORSiTERTOOT00296 5553 0.0010 (3/2982) 0 * Os_TE_127187 Os_TE_127182 Chr7 1849869 1849870 + MERMITEJ 1498 0.0033 (10/2992) 0 * Os_TE_127181 Os_TE_127181 Chr7 1849864 1849863 + MERMITED 1572 0.0033 (10/2991) 0 * Os_TE_127182 Os_TE_127152 Chr7 1836438 1836439 - MPING 430 0.0004 (1/2834) 0 * Os_TE_127151 Os_TE_127151 Chr7 1836436 1836435 + MPING 430 0.0004 (1/2825) 0 * Os_TE_127152 Os_TE_127139 Chr7 1830862 1830861 + ORSgTEMT01600222 242 0.0007 (2/2945) 0 * Os_TE_127138 Os_TE_127138 Chr7 1830859 1830860 - ORSgTEMT01601208 238 0.0017 (5/2973) 0 * Os_TE_127139 Os_TE_127135 Chr7 1829386 1829387 - DS-RICE2N 613 0.0007 (2/2980) 0 * Os_TE_127134 Os_TE_127134 Chr7 1829379 1829378 + DS-RICE2N 613 0.0007 (2/2984) 0 * Os_TE_127135 Os_TE_127098 Chr7 1820487 1817444 - TRUNCATOR 2918 0.3396 (995/2930) 1 Intact Os_TE_127091 Os_TE_127091 Chr7 1817395 1820367 - TRUNCATOR2_LTR 2904 0.3549 (1059/2984) 1 Intact Os_TE_127098 Os_TE_127079 Chr7 1810018 1810017 + OLO24 345 0.0003 (1/2988) 0 * * Os_TE_127057 Chr7 1804793 1804792 + ORSgTEMT01601591 242 0.0097 (12/1238) 0 * Os_TE_127056 Os_TE_127056 Chr7 1804790 1804791 + ORSgTEMT01601591 242 0.0028 (8/2899) 0 * Os_TE_127057 Os_TE_127043 Chr7 1800356 1800357 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_127042 Os_TE_127042 Chr7 1800352 1800351 + COPIA2-LTR_OS 6433 0.0003 (1/2986) 0 * Os_TE_127043 Os_TE_127037 Chr7 1797577 1797576 - ORSgTEMT01601493 303 0.6392 (1874/2932) 0 * * Os_TE_127031 Chr7 1797088 1797089 - STOWAWAY50_OS 174 0.0112 (33/2950) 0 * Os_TE_127030 Os_TE_127030 Chr7 1797077 1797076 - ORSgTEMT01700977 154 0.0112 (33/2955) 0 * Os_TE_127031 Os_TE_127026 Chr7 1795846 1795847 + COPIA2-LTR_OS 6433 0.0026 (6/2351) 0 * Os_TE_127025 Os_TE_127025 Chr7 1795842 1795841 - COPIA2-LTR_OS 6433 0.0045 (11/2419) 0 * Os_TE_127026 Os_TE_127010 Chr7 1791411 1791410 + ORSgTEMT00500176 153 0.6601 (1948/2951) 0 * * Os_TE_127008 Chr7 1790561 1790806 - ORSgTEMT00900099 250 0.3544 (1053/2971) 1 Intact * Os_TE_127006 Chr7 1790552 1790553 + OSTE18 129 0.6532 (1938/2967) 0 * * Os_TE_127005 Chr7 1790330 1790331 + ORSgTETNOOT00553 140 0.6522 (1909/2927) 0 * * Os_TE_126997 Chr7 1786506 1786505 - DNAUN1_OS 408 0.0017 (5/2982) 0 * * Os_TE_126994 Chr7 1786152 1786151 - ORSgTETNOOT00754 253 0.0003 (1/2991) 0 * * Os_TE_126990 Chr7 1782246 1782247 - SC-3_LTR 5748 0.0003 (1/2992) 0 * * Os_TE_126978 Chr7 1776523 1776524 + ORSiTERTOOT00296 5553 0.0007 (2/2998) 0 * Os_TE_126977 Os_TE_126977 Chr7 1776519 1776518 - SC-3_LTR 5748 0.0007 (2/2998) 0 * Os_TE_126978 Os_TE_126971 Chr7 1774194 1774195 + STOWAWAY51_OS 246 0.0013 (4/2969) 0 * * Os_TE_126960 Chr7 1773020 1773021 - ORSiTETNOOT00216 3569 0.0021 (6/2894) 0 * Os_TE_126959 Os_TE_126959 Chr7 1773013 1773012 + TWIFBIG 3567 0.0021 (6/2893) 0 * Os_TE_126960 Os_TE_126950 Chr7 1768895 1768896 + HARB-1_OS 5166 0.0003 (1/2955) 0 * Os_TE_126949 Os_TE_126949 Chr7 1768893 1768892 - HARB-1_OS 5166 0.0003 (1/2946) 0 * Os_TE_126950 Os_TE_126940 Chr7 1766326 1766035 + STOWAWAY11_OS 292 0.0801 (240/2995) 1 Intact Os_TE_126939 Os_TE_126939 Chr7 1766035 1766326 - STOWAWAY11_OS 292 0.0797 (239/2998) 1 Intact Os_TE_126940 Os_TE_126938 Chr7 1765924 1765925 - ORSgTEMT01701705 154 0.0013 (4/2976) 0 * * Os_TE_126929 Chr7 1762861 1763175 + ORSgTEMT00101588 319 0.0828 (246/2971) 1 Intact * Os_TE_126918 Chr7 1756782 1756781 - COPIA2-LTR_OS 6433 0.0015 (4/2697) 0 * * Os_TE_126908 Chr7 1747241 1747240 - ORSgTEMT01601432 239 0.0116 (3/259) 0 * Os_TE_126907 Os_TE_126907 Chr7 1747238 1747239 + ORSgTEMT01602181 239 0.0116 (3/258) 0 * Os_TE_126908 Os_TE_126904 Chr7 1747080 1747079 + ORSgTEMT01602626 237 0.0147 (44/2997) 0 * * Os_TE_126902 Chr7 1746809 1747020 - COWARD 200 0.0830 (248/2989) 1 Intact * Os_TE_126901 Chr7 1746555 1746302 + ORSgTEMT00900053 249 0.1197 (263/2198) 1 Intact * Os_TE_126894 Chr7 1745694 1745695 + SPMLIKE 10989 0.2953 (873/2956) 0 * * Os_TE_126892 Chr7 1745663 1745662 + ORSgTEMT01602004 234 0.0134 (40/2993) 0 * Os_TE_126891 Os_TE_126891 Chr7 1745660 1745661 - ORSgTEMT01602413 239 0.0137 (41/2996) 0 * Os_TE_126892 Os_TE_126890 Chr7 1745612 1745613 - SZ-35LTR 3853 0.0017 (5/2999) 0 * * Os_TE_126888 Chr7 1744330 1744331 + RIRE3_LTR 12054 0.1986 (594/2991) 0 * * Os_TE_126886 Chr7 1742734 1742733 + SZ-35LTR 3853 0.0154 (8/520) 0 * * Os_TE_126884 Chr7 1742600 1730022 + RETROSAT2LTR 12796 0.4845 (47/97) 1 Intact Os_TE_126853 Os_TE_126853 Chr7 1730020 1742600 - RETROSAT2LTR 12796 0.1007 (110/1092) 1 Intact Os_TE_126884 Os_TE_126852 Chr7 1729991 1729990 - MDR2 6967 0.0011 (1/886) 0 * * Os_TE_126842 Chr7 1726144 1726280 + ORSgTETNOOT01886 135 0.2331 (166/712) 1 Intact * Os_TE_126841 Chr7 1725948 1725739 - ORSgTEMT01400015 213 0.7820 (165/211) 1 Intact * Os_TE_126830 Chr7 1717884 1717883 - ORSiTERTOOT00392 5205 0.1127 (16/142) 0 * * Os_TE_126829 Chr7 1717817 1717818 - SC-10_LTR 4920 0.0010 (2/1986) 0 * Os_TE_126828 Os_TE_126828 Chr7 1717813 1717812 + SC-10_LTR 4920 0.0011 (2/1858) 0 * Os_TE_126829 Os_TE_126827 Chr7 1717714 1717715 + COPI2_LTR 4733 0.0014 (4/2952) 0 * * Os_TE_126818 Chr7 1715358 1716938 + MERMITE18B 1306 0.0763 (158/2070) 1 Intact * Os_TE_126816 Chr7 1715003 1714767 + TREP215 239 0.1109 (132/1190) 1 Intact Os_TE_126814 Os_TE_126814 Chr7 1714770 1715003 - ORSgTEMT01601521 234 0.1426 (156/1094) -1 Intact Os_TE_126816 Os_TE_126809 Chr7 1714516 1714677 - ORSgTEMT00501219 127 0.1312 (163/1242) 1 Intact * Os_TE_126807 Chr7 1714007 1714006 - COPI2_LTR 4733 0.0003 (1/2997) 0 * * Os_TE_126805 Chr7 1711902 1711903 - ORSgTEMT04600010 284 0.1405 (177/1260) 0 * Os_TE_126804 Os_TE_126804 Chr7 1711900 1711899 + ORSgTEMT04600010 284 0.5396 (1212/2246) 0 * Os_TE_126805 Os_TE_126803 Chr7 1711734 1711733 - MPING 430 0.0017 (5/2967) 0 * * Os_TE_126791 Chr7 1706952 1706953 - RETRO2_LTR 12874 0.0103 (21/2036) -1 * * Os_TE_126781 Chr7 1704399 1703676 - OSTE17 734 0.0376 (106/2818) 1 Intact Os_TE_126780 Os_TE_126780 Chr7 1703676 1704399 - OSTE17 734 0.0326 (92/2819) 1 Intact Os_TE_126781 Os_TE_126772 Chr7 1702280 1702279 - MuDR3_OS 8604 0.0067 (20/2963) 0 * * Os_TE_126768 Chr7 1701388 1701387 + NDNA1TNA_OS 334 0.0644 (129/2004) 0 * Os_TE_126767 Os_TE_126767 Chr7 1701383 1701384 + ORSgTEMT00101674 340 0.0418 (124/2964) 0 * Os_TE_126768 Os_TE_126764 Chr7 1698399 1698398 + TRUNCATOR 2918 0.0153 (26/1697) 0 * * Os_TE_126760 Chr7 1697707 1697706 - TESS 244 0.0094 (28/2990) 0 * * Os_TE_126759 Chr7 1697590 1697591 + ORSgTEMT00600376 329 0.3184 (951/2987) 0 * Os_TE_126758 Os_TE_126758 Chr7 1697585 1697584 + ORSgTEMT00600272 361 0.3208 (958/2986) 0 * Os_TE_126759 Os_TE_126757 Chr7 1697263 1697264 - OLO24 345 0.0013 (4/2989) 0 * Os_TE_126756 Os_TE_126756 Chr7 1697262 1697261 + OLO24 345 0.0017 (5/2994) 0 * Os_TE_126757 Os_TE_126755 Chr7 1697125 1696975 + ORSgTEMT00500419 153 0.4623 (1378/2981) 1 Intact Os_TE_126752 Os_TE_126752 Chr7 1696973 1697116 + ORSgTEMT00500476 150 0.4618 (1377/2982) 1 Intact Os_TE_126755 Os_TE_126742 Chr7 1692150 1692149 + STOWAWAY1_OS 149 0.6159 (1815/2947) 0 * Os_TE_126741 Os_TE_126741 Chr7 1692149 1692150 + ORSgTEMT01701432 152 0.6228 (1834/2945) 0 * Os_TE_126742 Os_TE_126739 Chr7 1691849 1691850 + WUWU 113 0.0486 (142/2924) 0 * * Os_TE_126738 Chr7 1690861 1690860 - ORSgTEMT00500578 129 0.3167 (932/2943) 0 * Os_TE_126737 Os_TE_126737 Chr7 1690860 1690861 + ORSgTEMT00501786 149 0.3209 (949/2957) 0 * Os_TE_126738 Os_TE_126736 Chr7 1690431 1690430 - ORSgTEMT02000011 196 0.3189 (945/2963) 0 * * Os_TE_126735 Chr7 1689838 1689839 - RETRO1_LTR 8314 0.0014 (3/2172) 0 * * Os_TE_126732 Chr7 1689483 1689482 - UNIQUE 158 0.3245 (967/2980) 0 * * Os_TE_126731 Chr7 1689445 1689446 + ORSgTEMT01702004 154 0.3198 (956/2989) 0 * * Os_TE_126728 Chr7 1687966 1687965 + RETRO2_LTR 12874 0.0010 (3/2980) 0 * * Os_TE_126727 Chr7 1687257 1687256 + OSTE18 129 0.6854 (830/1211) 0 * * Os_TE_126725 Chr7 1687056 1687055 + SPMLIKE 10989 0.3721 (144/387) 0 * Os_TE_126724 Os_TE_126724 Chr7 1687042 1687043 - ORSgTETN00200001 10994 0.1191 (141/1184) 0 * Os_TE_126725 Os_TE_126716 Chr7 1683070 1682917 - ORSgTEMT01701281 153 0.8784 (1084/1234) 1 Intact Os_TE_126715 Os_TE_126715 Chr7 1682917 1683070 + ORSgTEMT01702268 154 0.8787 (1072/1220) 1 Intact Os_TE_126716 Os_TE_126708 Chr7 1681727 1682448 + ORSgTEMT00600287 363 0.3269 (388/1187) 1 Intact * Os_TE_126704 Chr7 1680236 1678783 + MERMITE-17 2759 0.3692 (388/1051) 1 Intact * Os_TE_126692 Chr7 1673544 1673545 - RIREX_LTR 8828 0.0025 (1/405) 0 * * Os_TE_126690 Chr7 1666813 1666814 - TRSA_OS 353 0.0023 (3/1316) 0 * * Os_TE_126686 Chr7 1664801 1664802 + ORSiTERTOOT00088 856 0.0008 (1/1302) 0 * * Os_TE_126674 Chr7 1663456 1657085 - COPIA2-LTR_OS 6433 0.0471 (60/1273) 1 Intact Os_TE_126673 Os_TE_126673 Chr7 1657085 1663456 + COPIA2-LTR_OS 6433 0.0421 (53/1260) 1 Intact Os_TE_126674 Os_TE_126667 Chr7 1654975 1654974 + OSTE20 496 0.0172 (21/1224) 0 * * Os_TE_126666 Chr7 1654382 1654381 - STOWAWAY50_OS 174 0.0018 (2/1139) 0 * * Os_TE_126649 Chr7 1645236 1645237 - ORSgTETN00200001 10994 0.0169 (22/1304) 0 * Os_TE_126648 Os_TE_126648 Chr7 1645234 1645233 + SPMLIKE 10989 0.0170 (22/1297) 0 * Os_TE_126649 Os_TE_126623 Chr7 1630672 1630673 - ORSgTEMT01600768 234 0.2909 (849/2919) 0 * * Os_TE_126622 Chr7 1630511 1630512 + RETROSAT4_LTR 13504 0.2539 (741/2919) 0 * Os_TE_126621 Os_TE_126621 Chr7 1630507 1630506 - RETROSAT4_LTR 13504 0.2698 (800/2965) 0 * Os_TE_126622 Os_TE_126619 Chr7 1629329 1629330 + NDNA1TNA_OS 334 0.0181 (54/2987) 0 * Os_TE_126618 Os_TE_126618 Chr7 1629327 1629326 - NDNA1TNA_OS 334 0.0181 (54/2987) 0 * Os_TE_126619 Os_TE_126604 Chr7 1617706 1617707 - OSTE18 129 0.0014 (4/2960) 0 * * Os_TE_126598 Chr7 1613585 1613586 - Cassandra_OS-LTR 764 0.6644 (1988/2992) 0 * Os_TE_126597 Os_TE_126597 Chr7 1613581 1613580 + Cassandra_OS-LTR 764 0.6632 (1985/2993) 0 * Os_TE_126598 Os_TE_126594 Chr7 1612941 1612940 - SC-3_LTR 5748 0.0013 (4/2988) 0 * * Os_TE_126584 Chr7 1602243 1602244 + ORSiTERTOOT00296 5553 0.0003 (1/2995) 0 * Os_TE_126583 Os_TE_126583 Chr7 1602239 1602238 - SC-3_LTR 5748 0.0003 (1/2996) 0 * Os_TE_126584 Os_TE_126582 Chr7 1601284 1601285 - RIRE3A_LTR 10580 0.0003 (1/2999) 0 * Os_TE_126581 Os_TE_126581 Chr7 1601280 1601279 + RIRE3A_LTR 10580 0.0003 (1/2999) 0 * Os_TE_126582 Os_TE_126577 Chr7 1598772 1598773 - RIRE2_LTR 11306 0.0003 (1/2960) 0 * Os_TE_126576 Os_TE_126576 Chr7 1598768 1598767 - ORSgTERT00201216 11284 0.0003 (1/2953) 0 * Os_TE_126577 Os_TE_126575 Chr7 1598708 1598709 + MuDR2_OS 6770 0.0030 (9/2973) 0 * Os_TE_126574 Os_TE_126574 Chr7 1598699 1598698 - MuDR2_OS 6770 0.0030 (9/2969) 0 * Os_TE_126575 Os_TE_126572 Chr7 1597944 1597945 - TREP215 239 0.0017 (5/2988) 0 * * Os_TE_126566 Chr7 1593793 1593794 - SZ-55_LTR 10318 0.0011 (3/2770) 0 * * Os_TE_126532 Chr7 1580200 1580201 + MPING 430 0.0010 (3/2954) 0 * Os_TE_126531 Os_TE_126531 Chr7 1580198 1580197 - MPING 430 0.0010 (3/2960) 0 * Os_TE_126532 Os_TE_126517 Chr7 1575145 1575146 - RPO_OS 1983 0.0017 (5/2994) 0 * Os_TE_126516 Os_TE_126516 Chr7 1575141 1575140 + RPO_OS 1983 0.0017 (5/2997) 0 * Os_TE_126517 Os_TE_126509 Chr7 1574020 1574019 + ORSgTEMT01601591 242 0.0003 (1/2981) 0 * * Os_TE_126508 Chr7 1574007 1574006 + STOWAWAY51_OS 246 0.0003 (1/2985) 0 * * Os_TE_126506 Chr7 1573150 1573149 + STOWAWAY51_OS 246 0.0007 (2/2998) 0 * Os_TE_126505 Os_TE_126505 Chr7 1573144 1573145 - STOWAWAY51_OS 246 0.0007 (2/2999) 0 * Os_TE_126506 Os_TE_126504 Chr7 1573081 1573080 - STOWAWAY51_OS 246 0.0003 (1/2997) 0 * * Os_TE_126495 Chr7 1567355 1567354 - STOWAWAY51_OS 246 0.0003 (1/2992) 0 * * Os_TE_126482 Chr7 1565007 1565008 - CASTAWAY 364 0.0017 (5/2966) 0 * Os_TE_126481 Os_TE_126481 Chr7 1565006 1565005 + CASTAWAY 364 0.0013 (4/2967) 0 * Os_TE_126482 Os_TE_126479 Chr7 1564425 1564426 + Cassandra_OS-LTR 764 0.0017 (5/2976) 0 * Os_TE_126478 Os_TE_126478 Chr7 1564421 1564420 - Cassandra_OS-LTR 764 0.0017 (5/2972) 0 * Os_TE_126479 Os_TE_126472 Chr7 1561918 1561917 - ORSgTETN00200001 10994 0.0066 (18/2707) 0 * * Os_TE_126471 Chr7 1561895 1561896 + RETROSAT4_LTR 13504 0.0010 (3/2966) 0 * * Os_TE_126416 Chr7 1548895 1548896 + RIREX_LTR 8828 0.0003 (1/2889) 0 * Os_TE_126415 Os_TE_126415 Chr7 1548891 1548890 - RIREX_LTR 8828 0.0003 (1/2891) 0 * Os_TE_126416 Os_TE_126402 Chr7 1545650 1545649 - INDITTO 263 0.0007 (2/2970) 0 * * Os_TE_126401 Chr7 1543439 1543440 + RIREX_LTR 8828 0.0007 (2/2958) 0 * * Os_TE_126394 Chr7 1538921 1538920 + ORSgTEMT04800085 366 0.0487 (141/2895) 0 * * Os_TE_126390 Chr7 1537448 1537447 + ORSgTEMT01600300 235 0.6027 (1766/2930) 0 * * Os_TE_126385 Chr7 1536072 1536073 + STOWAWAY21_OS 243 0.0010 (1/1043) 0 * * Os_TE_126383 Chr7 1535715 1535714 + ORSgTEMT01701356 184 0.0018 (5/2760) 0 * * Os_TE_126333 Chr7 1515669 1515668 + RETRO2A_LTR 12895 0.0020 (6/2958) 0 * * Os_TE_126324 Chr7 1514214 1514215 + MERMITEA 1710 0.0017 (5/2906) 0 * * Os_TE_126323 Chr7 1514097 1514096 + ORSgTEMT00300069 394 0.0443 (128/2887) 0 * * Os_TE_126317 Chr7 1512964 1512965 - COPI2_LTR 4733 0.0030 (8/2628) 0 * Os_TE_126316 Os_TE_126316 Chr7 1512960 1512959 + COPI2_LTR 4733 0.0016 (4/2511) 0 * Os_TE_126317 Os_TE_126311 Chr7 1511146 1511145 + ORSgTEMT01700715 134 0.0012 (3/2489) 0 * * Os_TE_126307 Chr7 1510168 1509834 + SZ-28LTR 262 0.8455 (2517/2977) 1 Intact * Os_TE_126303 Chr7 1509443 1509442 + ORSgTEMT01700741 196 0.0020 (5/2530) 0 * * Os_TE_126302 Chr7 1509288 1509287 + RETROSAT2LTRA 3112 0.1647 (490/2976) 0 * * Os_TE_126301 Chr7 1508929 1508930 - MERMITED 1572 0.1671 (499/2986) 0 * * Os_TE_126299 Chr7 1506379 1508616 - CACTA-Q 2268 0.8423 (2431/2886) 1 Intact * Os_TE_126298 Chr7 1506366 1506367 + ORSiCMCM00100019 2717 0.0239 (60/2511) 0 * * Os_TE_126286 Chr7 1501198 1501199 - ORSgTEMT01601432 239 0.0017 (5/2911) 0 * Os_TE_126285 Os_TE_126285 Chr7 1501197 1501196 - ORSgTEMT01601493 303 0.0020 (6/2981) 0 * Os_TE_126286 Os_TE_126284 Chr7 1501120 1501121 + TYPEU4 402 0.1367 (393/2874) 0 * Os_TE_126283 Os_TE_126283 Chr7 1501112 1501111 - TYPEU1 380 0.1278 (366/2863) 0 * Os_TE_126284 Os_TE_126279 Chr7 1499942 1499943 - CACTA-J 1159 0.2013 (575/2857) 0 * * Os_TE_126276 Chr7 1498724 1498723 + SZ-62LTR 3649 0.2275 (666/2927) 0 * Os_TE_126275 Os_TE_126275 Chr7 1498681 1498682 - SZ-62LTR 3649 0.2461 (727/2954) 0 * Os_TE_126276 Os_TE_126274 Chr7 1498499 1498500 + SPMLIKE 10989 0.0007 (2/2898) 0 * Os_TE_126273 Os_TE_126273 Chr7 1498497 1498496 - ORSgTETN00200001 10994 0.0008 (2/2614) 0 * Os_TE_126274 Os_TE_126271 Chr7 1498044 1497806 + ORSgTEMT01601122 212 0.6201 (1688/2722) 1 Intact * Os_TE_126269 Chr7 1497498 1497499 + AMYLTP 383 0.1731 (507/2929) 0 * Os_TE_126268 Os_TE_126268 Chr7 1497490 1497489 - AMYLTP 383 0.1191 (326/2737) 0 * Os_TE_126269 Os_TE_126265 Chr7 1496418 1496665 - ORSgTEMT01600768 234 0.6191 (1770/2859) 1 Intact * Os_TE_126264 Chr7 1496337 1496336 + ORSgTEMT01700741 196 0.3979 (1158/2910) 0 * Os_TE_126263 Os_TE_126263 Chr7 1496335 1496336 - ORSgTEMT01700411 151 0.4063 (1186/2919) 0 * Os_TE_126264 Os_TE_126262 Chr7 1495807 1495808 - RPO_OS 1983 0.2368 (697/2943) 0 * Os_TE_126261 Os_TE_126261 Chr7 1495800 1495799 + RPO_OS 1983 0.0035 (8/2314) 0 * Os_TE_126262 Os_TE_126258 Chr7 1492616 1491906 - CACTA-L 1162 0.7751 (1720/2219) 1 Intact * Os_TE_126252 Chr7 1484653 1491093 + COPIA2-LTR_OS 6433 0.2689 (331/1231) 1 Intact * Os_TE_126236 Chr7 1473629 1477799 - RIRE3A_LTR 10580 0.1649 (270/1637) 1 Intact * Os_TE_126235 Chr7 1473464 1473465 - TRUNCATOR 2918 0.0018 (3/1709) 0 * * Os_TE_126234 Chr7 1472798 1472799 - SZ-35LTR 3853 0.0009 (2/2301) 0 * * Os_TE_126229 Chr7 1471356 1471357 + CACTA-M 1129 0.5937 (1347/2269) 0 * Os_TE_126228 Os_TE_126228 Chr7 1471354 1471353 - CACTA-H 1152 0.5893 (1326/2250) 0 * Os_TE_126229 Os_TE_126226 Chr7 1470994 1456159 - CACTA-M 1129 0.7263 (1635/2251) 1 Intact Os_TE_126220 Os_TE_126220 Chr7 1456156 1470998 + CACTA-B 1103 0.7252 (1665/2296) 1 Intact Os_TE_126226 Os_TE_126218 Chr7 1456101 1456100 - CACTA-E 1207 0.2238 (519/2319) 0 * * Os_TE_126207 Chr7 1451282 1451281 + ORSgTERTOOT00009 12852 0.0004 (1/2712) 0 * * Os_TE_126195 Chr7 1446088 1446089 - RETROSAT4_LTR 13504 0.0254 (76/2993) 0 * * Os_TE_126167 Chr7 1439573 1438550 - CACTA-H 1152 0.3763 (1045/2777) 1 Intact Os_TE_126165 Os_TE_126165 Chr7 1438550 1439573 + CACTA-I 1124 0.4287 (1046/2440) 1 Intact Os_TE_126167 Os_TE_126121 Chr7 1317606 1317607 - RIRE2_LTR 11306 0.0017 (5/2943) 0 * Os_TE_126120 Os_TE_126120 Chr7 1317602 1317601 + RIRE2_LTR 11306 0.0017 (5/2939) 0 * Os_TE_126121 Os_TE_126117 Chr7 1316040 1316041 + ORSgTETN00100092 209 0.0003 (1/2951) 0 * * Os_TE_126104 Chr7 1311275 1311274 - AMYLTP 383 0.0003 (1/2992) 0 * * Os_TE_126079 Chr7 1298039 1298040 - COPI2_LTR 4733 0.0003 (1/2992) 0 * Os_TE_126078 Os_TE_126078 Chr7 1298035 1298034 + COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_126079 Os_TE_126075 Chr7 1293919 1293920 + RETRO2_LTR 12874 0.0007 (2/2961) 0 * Os_TE_126074 Os_TE_126074 Chr7 1293915 1293914 - RETRO2_LTR 12874 0.0007 (2/2960) 0 * Os_TE_126075 Os_TE_126067 Chr7 1291864 1291865 - COPI2_LTR 4733 0.0003 (1/2974) -1 * Os_TE_126066 Os_TE_126066 Chr7 1291860 1291859 + COPI2_LTR 4733 0.0003 (1/2972) 0 * Os_TE_126067 Os_TE_126063 Chr7 1285642 1285641 - STOWAWAY51_OS 246 0.0003 (1/2993) 0 * * Os_TE_126060 Chr7 1280372 1280373 + ORSgTEMT00600124 361 0.0017 (5/2985) 0 * Os_TE_126059 Os_TE_126059 Chr7 1280370 1280369 + CASTAWAY 364 0.0017 (5/2981) 0 * Os_TE_126060 Os_TE_126057 Chr7 1274100 1274101 + RIREX_LTR 8828 0.0007 (2/2981) 0 * Os_TE_126056 Os_TE_126056 Chr7 1274096 1274095 - RIREX_LTR 8828 0.0007 (2/2979) 0 * Os_TE_126057 Os_TE_126035 Chr7 1267741 1267740 - TYPEM 227 0.0003 (1/2992) 0 * * Os_TE_126033 Chr7 1267262 1267263 - ORMOSIA 482 0.0037 (11/2950) 0 * * Os_TE_126026 Chr7 1266653 1266654 + ORSgTEMT01700429 128 0.0047 (14/2967) 0 * * Os_TE_126016 Chr7 1263703 1263704 - ORSgTEMT02000041 194 0.0575 (171/2972) 0 * * Os_TE_126015 Chr7 1263511 1263512 + COPIA2-LTR_OS 6433 0.0444 (133/2993) 0 * Os_TE_126014 Os_TE_126014 Chr7 1263507 1263506 - COPIA2-LTR_OS 6433 0.0437 (131/2996) 0 * Os_TE_126015 Os_TE_126012 Chr7 1263092 1263093 + MPING 430 0.0080 (24/2998) 0 * Os_TE_126011 Os_TE_126011 Chr7 1263090 1263089 - MPING 430 0.0083 (25/2999) 0 * Os_TE_126012 Os_TE_126009 Chr7 1262621 1262622 - HELITRON7_OS 10153 0.0017 (5/2992) 0 * * Os_TE_126005 Chr7 1262537 1262538 - COPIA2-LTR_OS 6433 0.0007 (2/2992) 0 * Os_TE_126004 Os_TE_126004 Chr7 1262533 1262532 + COPIA2-LTR_OS 6433 0.0007 (2/2996) 0 * Os_TE_126005 Os_TE_125983 Chr7 1256765 1256766 + STOWAWAY9_OS 235 0.0010 (3/2876) 0 * * Os_TE_125979 Chr7 1255739 1255740 - EnSpm-13_OS 11171 0.0003 (1/2986) 0 * * Os_TE_125968 Chr7 1254490 1254491 + RETRO1_LTR 8314 0.0020 (6/2991) 0 * Os_TE_125967 Os_TE_125967 Chr7 1254486 1254485 - RETRO2A_LTR 12895 0.0020 (6/2994) 0 * Os_TE_125968 Os_TE_125960 Chr7 1253467 1253468 + ORSiTERTOOT00074 4935 0.0003 (1/2888) 0 * * Os_TE_125955 Chr7 1248797 1248798 - MuDR3_OS 8604 0.0406 (118/2906) 0 * Os_TE_125954 Os_TE_125954 Chr7 1248788 1248787 - MuDR3_OS 8604 0.0291 (84/2884) 0 * Os_TE_125955 Os_TE_125951 Chr7 1247775 1247774 - INDITTO 263 0.0020 (6/2993) 0 * * Os_TE_125924 Chr7 1236396 1236397 - SC-3_LTR 5748 0.0003 (1/2990) 0 * Os_TE_125923 Os_TE_125923 Chr7 1236392 1236391 + ORSiTERTOOT00296 5553 0.0003 (1/2991) 0 * Os_TE_125924 Os_TE_125921 Chr7 1233719 1233720 - SC-3_LTR 5748 0.0020 (6/2953) 0 * Os_TE_125920 Os_TE_125920 Chr7 1233715 1233714 + ORSiTERTOOT00296 5553 0.0020 (6/2959) 0 * Os_TE_125921 Os_TE_125897 Chr7 1219932 1219931 + ORSgTEMT05000092 279 0.0013 (4/2991) 0 * * Os_TE_125896 Chr7 1219207 1219208 - ORSiTERTOOT00441 4741 0.0003 (1/2983) 0 * Os_TE_125895 Os_TE_125895 Chr7 1219203 1219202 + ORSiTERTOOT00441 4741 0.0003 (1/2986) 0 * Os_TE_125896 Os_TE_125894 Chr7 1218931 1218932 + AMYLTP 383 0.0017 (5/2992) 0 * Os_TE_125893 Os_TE_125893 Chr7 1218923 1218922 - AMYLTP 383 0.0017 (5/2992) 0 * Os_TE_125894 Os_TE_125886 Chr7 1215624 1215625 + ORSgTETNOOT00908 242 0.0013 (4/2992) 0 * * Os_TE_125883 Chr7 1215395 1215394 - RIREX_LTR 8828 0.0007 (2/2995) 0 * * Os_TE_125877 Chr7 1213457 1213458 - ORSgTEMT00100578 341 0.0640 (192/2998) 0 * * Os_TE_125867 Chr7 1210930 1210929 + MPING 430 0.0003 (1/2990) 0 * Os_TE_125866 Os_TE_125866 Chr7 1210909 1210910 - MPING 430 0.0003 (1/2993) 0 * Os_TE_125867 Os_TE_125864 Chr7 1210129 1210130 + INDITTO 263 0.0144 (43/2990) 0 * Os_TE_125863 Os_TE_125863 Chr7 1210127 1210126 - INDITTO 263 0.0144 (43/2982) 0 * Os_TE_125864 Os_TE_125862 Chr7 1210027 1210028 - ORSgTEMT02400179 221 0.0013 (4/2980) 0 * Os_TE_125861 Os_TE_125861 Chr7 1210026 1210025 - TYPEM 227 0.0013 (4/2984) 0 * Os_TE_125862 Os_TE_125858 Chr7 1208293 1208292 + STOWAWAY51_OS 246 0.0047 (14/2975) 0 * * Os_TE_125837 Chr7 1198423 1198422 - COPIA2-LTR_OS 6433 0.0157 (47/2987) 0 * * Os_TE_125836 Chr7 1198243 1198242 - ORSgTEMT01601122 212 0.0010 (3/2925) 0 * * Os_TE_125830 Chr7 1196733 1196732 - ORSgTEMT00900349 250 0.0155 (46/2971) 0 * * Os_TE_125823 Chr7 1196126 1196127 - HARB-1_OS 5166 0.0007 (2/2979) 0 * Os_TE_125822 Os_TE_125822 Chr7 1196124 1196123 + HARB-1_OS 5166 0.0007 (2/2987) 0 * Os_TE_125823 Os_TE_125806 Chr7 1190093 1190094 + RETRO1_LTR 8314 0.0004 (1/2481) 0 * Os_TE_125805 Os_TE_125805 Chr7 1190089 1190088 - RETRO1_LTR 8314 0.0004 (1/2570) 0 * Os_TE_125806 Os_TE_125799 Chr7 1188997 1188996 + ORSgTEMT00300129 365 0.0004 (1/2854) 0 * * Os_TE_125787 Chr7 1186451 1186452 + MuDR2_OS 6770 0.0007 (2/2990) 0 * Os_TE_125786 Os_TE_125786 Chr7 1186442 1186441 - MuDR2_OS 6770 0.0010 (3/2990) 0 * Os_TE_125787 Os_TE_125785 Chr7 1185957 1185958 + RIRE5-LTR_OS 6427 0.0007 (2/2965) 0 * Os_TE_125784 Os_TE_125784 Chr7 1185950 1185949 - RIRE5-LTR_OS 6427 0.0007 (2/2962) 0 * Os_TE_125785 Os_TE_125782 Chr7 1185833 1185834 - AMYLTP 383 0.2041 (608/2979) 0 * Os_TE_125781 Os_TE_125781 Chr7 1185832 1185831 + AMYLTP 383 0.1999 (592/2962) 0 * Os_TE_125782 Os_TE_125742 Chr7 1177223 1177224 - ORSiTERTOOT00308 5023 0.5669 (1683/2969) 0 * * Os_TE_125711 Chr7 1165061 1165062 - SZ-55_LTR 10318 0.0007 (2/2967) 0 * Os_TE_125710 Os_TE_125710 Chr7 1165057 1165056 + SZ-55_LTR 10318 0.0007 (2/2964) 0 * Os_TE_125711 Os_TE_125708 Chr7 1163360 1163361 - INDITTO 263 0.0469 (140/2988) 0 * Os_TE_125707 Os_TE_125707 Chr7 1163358 1163357 + INDITTO 263 0.0462 (138/2985) 0 * Os_TE_125708 Os_TE_125703 Chr7 1158710 1158711 + ORSgTEMT01500001 215 0.0017 (5/2987) 0 * * Os_TE_125699 Chr7 1155113 1155112 - ORSgTEMT01702039 162 0.0017 (5/2988) 0 * * Os_TE_125695 Chr7 1152119 1152120 + ORSiTERTOOT00402 2660 0.0007 (2/2996) 0 * * Os_TE_125689 Chr7 1147637 1149247 + SZ-55_LTR 10318 0.3215 (961/2989) 1 Solo_LTR * Os_TE_125680 Chr7 1142689 1142688 - COPIA2-LTR_OS 6433 0.0003 (1/2973) 0 * * Os_TE_125678 Chr7 1140949 1140948 + TOS17LTR 138 0.0013 (4/2999) 0 * * Os_TE_125656 Chr7 1132661 1132426 + TREP215 239 0.3702 (1102/2977) 1 Intact * Os_TE_125647 Chr7 1128392 1128391 + RIREX_LTR 8828 0.3499 (1047/2992) 0 * * Os_TE_125613 Chr7 1112553 1112554 - ORSiTERTOOT00311 8241 0.0447 (132/2955) 0 * * Os_TE_125606 Chr7 1110206 1110205 + ORSiTERTOOT00296 5553 0.0003 (1/2995) 0 * * Os_TE_125605 Chr7 1110032 1110033 - GAIJIN 147 0.0060 (18/2989) 0 * Os_TE_125604 Os_TE_125604 Chr7 1110030 1110029 + ORSgTEMT00500560 148 0.0067 (20/2990) 0 * Os_TE_125605 Os_TE_125603 Chr7 1109552 1109551 + ORSgTEMT00101384 299 0.0060 (18/2994) 0 * * Os_TE_125599 Chr7 1104132 1104133 - SC-3_LTR 5748 0.0003 (1/2992) 0 * Os_TE_125598 Os_TE_125598 Chr7 1104128 1104127 + ORSiTERTOOT00296 5553 0.0003 (1/2994) 0 * Os_TE_125599 Os_TE_125592 Chr7 1103172 1103173 + DASIA-2 1198 0.0007 (2/2975) 0 * Os_TE_125591 Os_TE_125591 Chr7 1103164 1103163 + DASIA-2 1198 0.0007 (2/2976) 0 * Os_TE_125592 Os_TE_125587 Chr7 1100756 1100757 + ORSiTERTOOT00296 5553 0.0007 (2/2998) 0 * Os_TE_125586 Os_TE_125586 Chr7 1100752 1100751 - SC-3_LTR 5748 0.0007 (2/2996) 0 * Os_TE_125587 Os_TE_125578 Chr7 1091388 1091389 + TOS17LTR 138 0.0060 (18/2993) 0 * * Os_TE_125548 Chr7 1072664 1072665 + RETRO2_LTR 12874 0.0067 (20/2975) 0 * Os_TE_125547 Os_TE_125547 Chr7 1072660 1072659 - RETRO1_LTR 8314 0.0064 (19/2981) 0 * Os_TE_125548 Os_TE_125538 Chr7 1070994 1070995 - RETROSAT4_LTR 13504 0.5998 (1785/2976) 0 * Os_TE_125537 Os_TE_125537 Chr7 1070990 1070989 + RETROSAT4_LTR 13504 0.5951 (1764/2964) 0 * Os_TE_125538 Os_TE_125536 Chr7 1069566 1069567 - ORSgTEMT02900114 314 0.0003 (1/2993) 0 * * Os_TE_125507 Chr7 1064830 1064829 - OSTE24 683 0.0016 (2/1258) 0 * * Os_TE_125504 Chr7 1063565 1063566 + ORSgTEMT01400032 215 0.0041 (5/1213) 0 * * Os_TE_125501 Chr7 1062346 1062345 - ENSPM5_OS 9581 0.0010 (3/2992) 0 * * Os_TE_125496 Chr7 1059949 1059950 - RIREX_LTR 8828 0.0040 (12/2985) 0 * Os_TE_125495 Os_TE_125495 Chr7 1059945 1059944 - RIREX_LTR 8828 0.0040 (12/2987) 0 * Os_TE_125496 Os_TE_125494 Chr7 1059827 1059828 - COPI2_LTR 4733 0.0007 (2/2977) 0 * Os_TE_125493 Os_TE_125493 Chr7 1059823 1059822 + COPI2_LTR 4733 0.0007 (2/2975) 0 * Os_TE_125494 Os_TE_125489 Chr7 1054615 1054616 + MDR2 6967 0.0078 (23/2965) 0 * Os_TE_125488 Os_TE_125488 Chr7 1054607 1054606 + MDR2 6967 0.0081 (24/2965) 0 * Os_TE_125489 Os_TE_125482 Chr7 1052613 1052612 - DITTO3 260 0.0043 (13/2993) 0 * Os_TE_125481 Os_TE_125481 Chr7 1052612 1052613 + ORSgTEMT00901798 232 0.0044 (13/2988) 0 * Os_TE_125482 Os_TE_125480 Chr7 1052365 1052366 + MPING 430 0.0003 (1/2991) 0 * Os_TE_125479 Os_TE_125479 Chr7 1052363 1052362 - MPING 430 0.0003 (1/2993) 0 * Os_TE_125480 Os_TE_125478 Chr7 1052215 1052216 - ORSgTEMT00501447 126 0.0044 (13/2971) 0 * Os_TE_125477 Os_TE_125477 Chr7 1052213 1052212 - ORSgTEMT00500675 140 0.0044 (13/2971) 0 * Os_TE_125478 Os_TE_125467 Chr7 1048347 1048348 - SC-8_LTR 4951 0.0078 (23/2959) 0 * Os_TE_125466 Os_TE_125466 Chr7 1048343 1048342 + SC-8_LTR 4951 0.0078 (23/2952) 0 * Os_TE_125467 Os_TE_125464 Chr7 1047181 1047180 - STOWAWAY51_OS 246 0.0003 (1/2976) 0 * Os_TE_125463 Os_TE_125463 Chr7 1047178 1047179 + ORSgTEMT01601591 242 0.0003 (1/2985) 0 * Os_TE_125464 Os_TE_125462 Chr7 1046254 1046255 + SZ-55_LTR 10318 0.0003 (1/2976) 0 * * Os_TE_125456 Chr7 1041757 1041758 + OLO24 345 0.0358 (105/2932) 0 * Os_TE_125455 Os_TE_125455 Chr7 1041755 1041754 - OLO24 345 0.0356 (103/2896) 0 * Os_TE_125456 Os_TE_125439 Chr7 1034456 1034457 - GYPSY-A_LTR 8951 0.0057 (17/2993) 0 * Os_TE_125438 Os_TE_125438 Chr7 1034452 1034451 + GYPSY-A_LTR 8951 0.0053 (16/2993) 0 * Os_TE_125439 Os_TE_125431 Chr7 1032516 1032517 - ORSiTERT00100062 5674 0.0003 (1/2989) 0 * Os_TE_125430 Os_TE_125430 Chr7 1032512 1032511 + OSTONOR1_LTR 6440 0.0003 (1/2987) 0 * Os_TE_125431 Os_TE_125414 Chr7 1029521 1029522 - NDNA1TNA_OS 334 0.0084 (25/2961) 0 * * Os_TE_125409 Chr7 1026732 1026731 + SZ-67LTR 1540 0.5302 (1570/2961) 0 * * Os_TE_125390 Chr7 1022646 1022647 - CRM-LTR_OS 7749 0.0010 (3/2977) 0 * Os_TE_125389 Os_TE_125389 Chr7 1022642 1022641 + CRM-LTR_OS 7749 0.0010 (3/2977) 0 * Os_TE_125390 Os_TE_125380 Chr7 1015366 1015365 - ORSgTEMT01700507 154 0.0137 (41/2982) 0 * Os_TE_125379 Os_TE_125379 Chr7 1015363 1015364 - ORSgTEMT01701104 154 0.0141 (42/2979) 0 * Os_TE_125380 Os_TE_125285 Chr7 980903 980904 - SC-8_LTR 4951 0.0030 (9/2991) 0 * Os_TE_125284 Os_TE_125284 Chr7 980899 980898 + ORSiTERTOOT00381 4988 0.0030 (9/2990) 0 * Os_TE_125285 Os_TE_125281 Chr7 978687 978688 - OSCOPIA2_LTR 5476 0.0024 (7/2881) 0 * * Os_TE_125251 Chr7 969448 969190 + ORSgTETNOOT01846 238 0.3332 (997/2992) 1 Intact Os_TE_125247 Os_TE_125247 Chr7 969190 969448 + ORSgTETNOOT02577 232 0.3332 (992/2977) 1 Intact Os_TE_125251 Os_TE_125244 Chr7 964861 964862 + RETROSAT4_LTR 13504 0.6548 (1874/2862) 0 * Os_TE_125243 Os_TE_125243 Chr7 964857 964856 - RETROSAT4_LTR 13504 0.6694 (1978/2955) 0 * Os_TE_125244 Os_TE_125238 Chr7 957955 957954 - TRUNCATOR2_LTR 2904 0.0019 (2/1042) 0 * * Os_TE_125232 Chr7 949910 950244 - CASTAWAY 364 0.3293 (986/2994) 1 Intact * Os_TE_125222 Chr7 944823 944664 + WUWU 113 0.3287 (978/2975) 1 Intact Os_TE_125221 Os_TE_125221 Chr7 944664 944823 + WUWU 113 0.3331 (984/2954) 1 Intact Os_TE_125222 Os_TE_125219 Chr7 943090 942956 - STOWAWAY47_OS 148 0.3772 (1112/2948) 1 Intact * Os_TE_125191 Chr7 927407 927408 + AMYLTP 383 0.0017 (5/2974) 0 * Os_TE_125190 Os_TE_125190 Chr7 927399 927398 - AMYLTP 383 0.0024 (6/2515) 0 * Os_TE_125191 Os_TE_125168 Chr7 918120 919508 - MERMITE18B 1306 0.5897 (1748/2964) 1 Intact * Os_TE_125159 Chr7 913744 913745 - ORSgTETNOOT02536 198 0.0004 (1/2849) 0 * * Os_TE_125153 Chr7 912233 912232 + ENSPM4_OS 11610 0.0081 (24/2971) 0 * * Os_TE_125151 Chr7 911846 911847 - ORSgTERT00201216 11284 0.0075 (22/2918) 0 * Os_TE_125150 Os_TE_125150 Chr7 911842 911841 - RIRE2_LTR 11306 0.0078 (23/2955) 0 * Os_TE_125151 Os_TE_125149 Chr7 911271 911272 - MPING 430 0.0003 (1/2981) 0 * Os_TE_125148 Os_TE_125148 Chr7 911269 911268 + MPING 430 0.0003 (1/2983) 0 * Os_TE_125149 Os_TE_125144 Chr7 907297 907298 + COPI1_LTR 4721 0.0013 (4/2987) 0 * Os_TE_125143 Os_TE_125143 Chr7 907293 907292 - SZ-25LTR 330 0.0007 (2/2982) 0 * Os_TE_125144 Os_TE_125137 Chr7 906412 906411 + STOWAWAY51_OS 246 0.0336 (100/2979) 0 * * Os_TE_125134 Chr7 906020 906019 + SZLTR 1249 0.0055 (16/2927) 0 * * Os_TE_125129 Chr7 904885 904886 - ORSiTERT00100062 5674 0.0014 (4/2941) 0 * * Os_TE_125120 Chr7 900481 900482 - SZ-48LTR 3632 0.0815 (243/2982) 0 * * Os_TE_125118 Chr7 900203 900202 - ORSiTERT00100080 6173 0.5772 (1727/2992) 0 * * Os_TE_125114 Chr7 899412 899411 + F569 228 0.0060 (18/2992) 0 * * Os_TE_125113 Chr7 898846 898847 - ORSgTEMT00700002 381 0.0007 (2/2942) 0 * * Os_TE_125109 Chr7 898609 898610 + TNR2A 152 0.0121 (34/2820) 0 * * Os_TE_125105 Chr7 897721 897722 - RIREX_LTR 8828 0.0138 (40/2899) 0 * Os_TE_125104 Os_TE_125104 Chr7 897717 897716 + RIREX_LTR 8828 0.0130 (39/2990) 0 * Os_TE_125105 Os_TE_125092 Chr7 891407 891408 - GYPSY-A_LTR 8951 0.1324 (209/1579) 0 * * Os_TE_125091 Chr7 891402 892303 + Cassandra_OS-LTR 764 0.5685 (938/1650) 1 Intact * Os_TE_125086 Chr7 889955 889956 - ORSgTEMT01601493 303 0.0105 (17/1618) 0 * * Os_TE_125082 Chr7 889617 889618 - TELIA 141 0.0005 (1/1837) 0 * * Os_TE_125081 Chr7 889509 889510 + ORSgTEMT01601934 207 0.0082 (15/1826) 0 * * Os_TE_125080 Chr7 889371 889372 + ORSgTEMT00100818 160 0.0011 (2/1874) 0 * * Os_TE_125076 Chr7 888468 888469 + RETRO1_LTR 8314 0.0560 (102/1823) 0 * * Os_TE_125074 Chr7 887634 887635 + SZ-67LTR 1540 0.0004 (1/2251) 0 * Os_TE_125073 Os_TE_125073 Chr7 887630 887629 - RETROSAT5_LTR 13878 0.0005 (1/1821) 0 * Os_TE_125074 Os_TE_125070 Chr7 885687 885688 - RIRE2_LTR 11306 0.0042 (6/1414) 0 * * Os_TE_125069 Chr7 885638 879208 + COPIA2-LTR_OS 6433 0.6510 (925/1421) 1 Intact Os_TE_125061 Os_TE_125061 Chr7 879208 885638 - COPIA2-LTR_OS 6433 0.6584 (956/1452) 1 Intact Os_TE_125069 Os_TE_125055 Chr7 877848 877849 + SZ-62LTR 3649 0.0800 (101/1262) 0 * * Os_TE_125032 Chr7 860047 860046 + ORSgTEMT01701101 133 0.0247 (73/2951) 0 * * Os_TE_125031 Chr7 860044 860045 + ORSgTEMT01700513 151 0.0257 (76/2962) 0 * Os_TE_125030 Os_TE_125030 Chr7 860041 860040 - ORSgTEMT01701663 106 0.0247 (73/2956) 0 * Os_TE_125031 Os_TE_125027 Chr7 857406 857405 - OSTE24 683 0.0534 (156/2920) 0 * * Os_TE_125024 Chr7 857063 857064 + COPI2_LTR 4733 0.0074 (22/2976) 0 * Os_TE_125023 Os_TE_125023 Chr7 857059 857058 - COPI2_LTR 4733 0.0020 (6/2967) 0 * Os_TE_125024 Os_TE_125014 Chr7 856718 856719 + SZ-55_LTR 10318 0.0236 (70/2971) 0 * Os_TE_125013 Os_TE_125013 Chr7 856714 856713 - SZ-55_LTR 10318 0.0235 (70/2980) 0 * Os_TE_125014 Os_TE_125009 Chr7 854229 854230 - LINE-4_OS 3662 0.0017 (5/2998) 0 * * Os_TE_125000 Chr7 851033 851032 - SEVERIN-2 1952 0.0017 (5/2991) 0 * * Os_TE_124998 Chr7 849263 849264 + ORSiTERTOOT00332 5395 0.0007 (2/2978) 0 * * Os_TE_124996 Chr7 846867 846868 - TYPEM 227 0.0013 (4/2991) 0 * * Os_TE_124994 Chr7 846836 846837 - COPIA2-LTR_OS 6433 0.0010 (3/2997) 0 * Os_TE_124993 Os_TE_124993 Chr7 846832 846831 + COPIA2-LTR_OS 6433 0.0010 (3/2998) 0 * Os_TE_124994 Os_TE_124990 Chr7 845263 845147 + ORSgTEMT01701634 154 0.4127 (1212/2937) 1 Intact Os_TE_124989 Os_TE_124989 Chr7 845147 845257 + ORSgTEMT01701858 154 0.4092 (1210/2957) 1 Intact Os_TE_124990 Os_TE_124988 Chr7 844930 844929 - ORSgTEMT00500439 153 0.6093 (1815/2979) 0 * * Os_TE_124980 Chr7 839277 839276 + ORSgTEMT01602051 240 0.0010 (3/2978) 0 * Os_TE_124979 Os_TE_124979 Chr7 839274 839275 - ORSgTEMT01602467 227 0.0017 (5/2981) 0 * Os_TE_124980 Os_TE_124966 Chr7 836363 836364 + HELITRON8_OS 8831 0.0013 (4/2981) 0 * * Os_TE_124965 Chr7 835829 835830 - RETRO2A_LTR 12895 0.0013 (4/2980) 0 * Os_TE_124964 Os_TE_124964 Chr7 835825 835824 + RETRO1_LTR 8314 0.0010 (3/2927) 0 * Os_TE_124965 Os_TE_124953 Chr7 832114 832115 + MPING 430 0.0003 (1/2968) 0 * Os_TE_124952 Os_TE_124952 Chr7 832112 832111 - MPING 430 0.0003 (1/2969) 0 * Os_TE_124953 Os_TE_124950 Chr7 830901 830902 - CRM-LTR_OS 7749 0.0003 (1/2975) 0 * * Os_TE_124938 Chr7 824984 824985 + SPMLIKE 10989 0.0088 (26/2943) 0 * Os_TE_124937 Os_TE_124937 Chr7 824982 824981 - ORSgTETN00200001 10994 0.0075 (22/2934) 0 * Os_TE_124938 Os_TE_124926 Chr7 818349 818350 - GYPSY-B_LTR 7068 0.0017 (5/2992) 0 * * Os_TE_124923 Chr7 818127 818126 - COPIA2-LTR_OS 6433 0.0003 (1/2982) 0 * * Os_TE_124902 Chr7 809213 809212 + RETRO1_LTR 8314 0.0438 (131/2994) 0 * * Os_TE_124891 Chr7 802926 802927 + RETROSAT3_LTR 11537 0.0003 (1/2990) 0 * Os_TE_124890 Os_TE_124890 Chr7 802922 802921 - RETROSAT2LTRA 3112 0.0003 (1/2984) 0 * Os_TE_124891 Os_TE_124861 Chr7 793743 793742 - TYPEM 227 0.4490 (1329/2960) 0 * * Os_TE_124859 Chr7 792303 792302 + TELIA 141 0.0004 (1/2716) 0 * * Os_TE_124857 Chr7 792194 792193 + INDITTO 263 0.0003 (1/2931) 0 * * Os_TE_124845 Chr7 786903 786904 - RETRO2_LTR 12874 0.0024 (7/2948) 0 * Os_TE_124844 Os_TE_124844 Chr7 786899 786898 + RETRO1_LTR 8314 0.0024 (7/2906) 0 * Os_TE_124845 Os_TE_124835 Chr7 783622 783623 - SZ-40LTR 2465 0.0003 (1/2968) 0 * Os_TE_124834 Os_TE_124834 Chr7 783618 783617 + SZ-40LTR 2465 0.0003 (1/2963) 0 * Os_TE_124835 Os_TE_124832 Chr7 780538 780539 - OSTE15 1168 0.0003 (1/2947) 0 * * Os_TE_124830 Chr7 780480 780481 + ORSgTEMT00100272 356 0.0024 (7/2973) 0 * * Os_TE_124816 Chr7 771277 771278 - RIRE2_LTR 11306 0.0087 (26/2988) 0 * Os_TE_124815 Os_TE_124815 Chr7 771273 771272 + RIRE2_LTR 11306 0.0094 (28/2990) 0 * Os_TE_124816 Os_TE_124812 Chr7 770603 770604 + MPING 430 0.0003 (1/2979) 0 * Os_TE_124811 Os_TE_124811 Chr7 770601 770600 - MPING 430 0.0003 (1/2980) 0 * Os_TE_124812 Os_TE_124810 Chr7 770410 770411 + COPIA2-LTR_OS 6433 0.0003 (1/2964) 0 * Os_TE_124809 Os_TE_124809 Chr7 770406 770405 - COPIA2-LTR_OS 6433 0.0003 (1/2959) 0 * Os_TE_124810 Os_TE_124781 Chr7 756673 756674 - SC-8_LTR 4951 0.0003 (1/2989) 0 * Os_TE_124780 Os_TE_124780 Chr7 756669 756668 + SC-8_LTR 4951 0.0003 (1/2989) 0 * Os_TE_124781 Os_TE_124771 Chr7 749568 749569 + STOWAWAY51_OS 246 0.0003 (1/2983) 0 * * Os_TE_124698 Chr7 702801 702802 - HELITRON4_OS 13190 0.0238 (62/2605) 0 * * Os_TE_124695 Chr7 699197 697494 + MERMITE18B 1306 0.8562 (2548/2976) 1 Intact * Os_TE_124687 Chr7 697076 697455 - TYPEU1 380 0.8525 (2526/2963) 1 Intact * Os_TE_124684 Chr7 696007 696006 + CACTA-M 1129 0.1572 (469/2983) 0 * * Os_TE_124676 Chr7 689097 689098 - ORSgTEMT03000049 380 0.1479 (440/2975) 0 * Os_TE_124675 Os_TE_124675 Chr7 689089 689088 - TYPEU 362 0.1390 (410/2949) 0 * Os_TE_124676 Os_TE_124674 Chr7 688920 688921 + SZ-22_LTR 4403 0.4109 (1195/2908) 0 * Os_TE_124673 Os_TE_124673 Chr7 688916 688915 - SZ-22_LTR 4403 0.4891 (1236/2527) 0 * Os_TE_124674 Os_TE_124625 Chr7 666140 666139 + OSTONOR1_LTR 6440 0.0243 (64/2634) 0 * * Os_TE_124599 Chr7 655609 655610 + RIRE5-LTR_OS 6427 0.0017 (5/2986) 0 * Os_TE_124598 Os_TE_124598 Chr7 655602 655601 - RIRE5-LTR_OS 6427 0.0020 (6/2990) 0 * Os_TE_124599 Os_TE_124596 Chr7 654381 654380 + RETRO1_LTR 8314 0.1377 (402/2919) 0 * * Os_TE_124590 Chr7 652775 652776 + NDNA1TNA_OS 334 0.0003 (1/2920) 0 * * Os_TE_124588 Chr7 652309 652310 + ORSgTERT00200961 124 0.0014 (4/2843) 0 * * Os_TE_124587 Chr7 651761 651760 + YOUREN 286 0.0004 (1/2604) 0 * * Os_TE_124554 Chr7 644185 644186 + OSMU5 4881 0.0014 (4/2770) 0 * * Os_TE_124552 Chr7 644006 644007 + HELITRON8_OS 8831 0.0028 (7/2521) 0 * * Os_TE_124548 Chr7 643555 643556 - NDNA1TNA_OS 334 0.1271 (370/2910) 0 * Os_TE_124547 Os_TE_124547 Chr7 643553 643552 + NDNA1TNA_OS 334 0.1347 (395/2932) 0 * Os_TE_124548 Os_TE_124536 Chr7 640739 640740 + TEMPINDAS 4259 0.4436 (1293/2915) 0 * * Os_TE_124491 Chr7 635228 635229 + COPIA2-LTR_OS 6433 0.0003 (1/2942) 0 * Os_TE_124490 Os_TE_124490 Chr7 635224 635223 - COPIA2-LTR_OS 6433 0.0003 (1/2947) 0 * Os_TE_124491 Os_TE_124489 Chr7 633713 633712 + RIREX_LTR 8828 0.0014 (4/2889) 0 * * Os_TE_124487 Chr7 633487 633486 + MPING 430 0.0003 (1/2961) 0 * * Os_TE_124451 Chr7 613824 613622 - ORSgTETNOOT01337 247 0.8425 (1878/2229) 1 Intact * Os_TE_124428 Chr7 607650 607649 - ORSgTEMT01601432 239 0.0026 (3/1174) 0 * * Os_TE_124392 Chr7 593567 593568 - COPIA2-LTR_OS 6433 0.0004 (1/2434) 0 * * Os_TE_124273 Chr7 537084 537085 - SZ-54A_LTR 5249 0.0578 (172/2975) 0 * Os_TE_124272 Os_TE_124272 Chr7 537080 537079 + SZ-54A_LTR 5249 0.0574 (171/2977) 0 * Os_TE_124273 Os_TE_124186 Chr7 488338 488339 - ORSgTEMT01602521 238 0.0003 (1/2982) 0 * * Os_TE_124181 Chr7 487467 487468 + COPIA2-LTR_OS 6433 0.0216 (62/2869) 0 * Os_TE_124180 Os_TE_124180 Chr7 487463 487462 - COPIA2-LTR_OS 6433 0.0272 (78/2867) 0 * Os_TE_124181 Os_TE_124165 Chr7 483088 483089 + CACTA-B 1103 0.1570 (439/2796) 0 * * Os_TE_124133 Chr7 478129 478130 - STOWAWAY43_OS 233 0.0008 (2/2591) 0 * * Os_TE_124131 Chr7 476238 476239 - MPING 430 0.0003 (1/2988) 0 * Os_TE_124130 Os_TE_124130 Chr7 476236 476235 + MPING 430 0.0003 (1/2988) 0 * Os_TE_124131 Os_TE_124127 Chr7 474543 474542 + MPING 430 0.0003 (1/2985) 0 * * Os_TE_124105 Chr7 466475 466476 - STOWAWAY51_OS 246 0.0003 (1/2936) 0 * * Os_TE_124103 Chr7 464027 464028 - COPIA2-LTR_OS 6433 0.0016 (2/1218) 0 * Os_TE_124102 Os_TE_124102 Chr7 464023 464022 + COPIA2-LTR_OS 6433 0.0017 (2/1211) 0 * Os_TE_124103 Os_TE_124065 Chr7 444296 444297 + MPING 430 0.0003 (1/2990) 0 * * Os_TE_124045 Chr7 429102 429103 - TNR2A 152 0.0003 (1/2991) 0 * * Os_TE_124018 Chr7 419483 419484 + COPI2_LTR 4733 0.4878 (1416/2903) 0 * Os_TE_124017 Os_TE_124017 Chr7 419479 419478 - COPI2_LTR 4733 0.4961 (1461/2945) 0 * Os_TE_124018 Os_TE_124016 Chr7 418061 418062 - STOWAWAY43_OS 233 0.0006 (1/1590) 0 * * Os_TE_123991 Chr7 411901 411900 - SZ-40LTR 2465 0.0007 (2/2974) 0 * * Os_TE_123965 Chr7 405922 405921 - INDITTO 263 0.0017 (5/2931) 0 * * Os_TE_123951 Chr7 386034 386035 + OLO24 345 0.0015 (4/2716) 0 * * Os_TE_123943 Chr7 383346 383347 + NDNA1TNA_OS 334 0.0030 (8/2644) 0 * Os_TE_123942 Os_TE_123942 Chr7 383344 383343 - NDNA1TNA_OS 334 0.0030 (8/2646) 0 * Os_TE_123943 Os_TE_123940 Chr7 382151 376625 - SZ-62LTR 3649 0.3870 (1058/2734) 1 Intact * Os_TE_123931 Chr7 375662 375661 - ORSgTEMT01601178 230 0.0876 (255/2912) 0 * Os_TE_123930 Os_TE_123930 Chr7 375647 375648 + ORSgTEMT01600891 233 0.0992 (292/2944) 0 * Os_TE_123931 Os_TE_123923 Chr7 373783 373784 - ORSgTEMT00900034 246 0.0017 (5/2961) 0 * * Os_TE_123916 Chr7 371003 371240 + ORSgTEMT01601219 235 0.8069 (1120/1388) 1 Intact * Os_TE_123912 Chr7 370439 370440 - ORSgTEMT00300141 415 0.0815 (241/2957) 0 * * Os_TE_123896 Chr7 367824 367825 - OSTE14 885 0.1080 (282/2612) 0 * * Os_TE_123894 Chr7 367558 367559 + ORSgTETN00200005 1121 0.0306 (88/2880) 0 * * Os_TE_123893 Chr7 367513 367514 + RETROSAT4_LTR 13504 0.0014 (3/2218) 0 * Os_TE_123892 Os_TE_123892 Chr7 367509 367508 - RETROSAT4_LTR 13504 0.0045 (12/2687) 0 * Os_TE_123893 Os_TE_123886 Chr7 366599 366598 + CACTA-B 1103 0.0771 (228/2957) 0 * * Os_TE_123879 Chr7 364157 364158 - ORSgTEMT02400246 177 0.0905 (270/2982) 0 * * Os_TE_123855 Chr7 357438 357439 + COPIA2-LTR_OS 6433 0.0004 (1/2703) 0 * Os_TE_123854 Os_TE_123854 Chr7 357434 357433 - COPIA2-LTR_OS 6433 0.0003 (1/2946) 0 * Os_TE_123855 Os_TE_123848 Chr7 355996 355997 + SZ-9LTR 965 0.0924 (268/2901) 0 * * Os_TE_123839 Chr7 349353 349352 - STOWAWAY51_OS 246 0.0017 (5/2996) 0 * Os_TE_123838 Os_TE_123838 Chr7 349347 349348 + STOWAWAY51_OS 246 0.0017 (5/2998) 0 * Os_TE_123839 Os_TE_123835 Chr7 346413 346414 - SC-3_LTR 5748 0.0003 (1/2989) 0 * Os_TE_123834 Os_TE_123834 Chr7 346409 346408 + ORSiTERTOOT00296 5553 0.0007 (2/2992) 0 * Os_TE_123835 Os_TE_123825 Chr7 343068 343067 - SC-3_LTR 5748 0.0007 (2/2995) 0 * * Os_TE_123823 Chr7 342818 342817 - F524 291 0.0017 (5/2995) 0 * * Os_TE_123808 Chr7 332051 332052 - Cassandra_OS-LTR 764 0.0345 (102/2959) 0 * Os_TE_123807 Os_TE_123807 Chr7 332047 332046 + Cassandra_OS-LTR 764 0.0354 (104/2938) 0 * Os_TE_123808 Os_TE_123785 Chr7 325955 325954 + STOWAWAY45_OS 266 0.0219 (65/2970) 0 * * Os_TE_123783 Chr7 325653 325654 - TYPEU 362 0.0017 (5/2994) 0 * * Os_TE_123761 Chr7 313102 325014 + RETRO2_LTR 12874 0.3182 (933/2932) 1 Intact * Os_TE_123758 Chr7 312685 312686 + RETROSAT4_LTR 13504 0.0378 (113/2987) 0 * Os_TE_123757 Os_TE_123757 Chr7 312681 312680 - RETROSAT4_LTR 13504 0.0388 (116/2991) 0 * Os_TE_123758 Os_TE_123754 Chr7 311340 311339 + ORSgTETNOOT00032 218 0.0565 (169/2989) 0 * * Os_TE_123747 Chr7 305106 305107 - SZ-35LTR 3853 0.0003 (1/2879) 0 * * Os_TE_123740 Chr7 303746 304395 + TWIFB1 3737 0.3339 (995/2980) 1 Intact * Os_TE_123738 Chr7 301645 301644 + ORSgTEMT00901798 232 0.0017 (5/2995) 0 * Os_TE_123737 Os_TE_123737 Chr7 301641 301642 - ORSgTEMT00901408 244 0.0017 (5/2997) 0 * Os_TE_123738 Os_TE_123730 Chr7 298615 298616 + RETROSAT4_LTR 13504 0.0003 (1/2996) 0 * Os_TE_123729 Os_TE_123729 Chr7 298611 298610 - SZ-35LTR 3853 0.0003 (1/2996) 0 * Os_TE_123730 Os_TE_123721 Chr7 293199 293200 + ORSiTERTOOT00028 8600 0.0003 (1/2995) 0 * Os_TE_123720 Os_TE_123720 Chr7 293195 293194 - TRUNCATOR2_LTR 2904 0.0003 (1/2987) 0 * Os_TE_123721 Os_TE_123718 Chr7 292571 292572 + SZ-55_LTR 10318 0.4208 (1212/2880) 0 * Os_TE_123717 Os_TE_123717 Chr7 292567 292566 - SZ-55_LTR 10318 0.3980 (1186/2980) 0 * Os_TE_123718 Os_TE_123716 Chr7 290804 290441 + CASTAWAY 364 0.3439 (1000/2908) 1 Intact Os_TE_123712 Os_TE_123712 Chr7 290441 290804 - ORSgTEMT00600085 364 0.3340 (985/2949) 1 Intact Os_TE_123716 Os_TE_123710 Chr7 290362 290363 - COPI2_LTR 4733 0.0003 (1/2986) 0 * * Os_TE_123703 Chr7 288444 288445 + RETROSAT4_LTR 13504 0.0829 (246/2967) 0 * Os_TE_123702 Os_TE_123702 Chr7 288441 288440 - RETROSAT4_LTR 13504 0.0842 (250/2968) 0 * Os_TE_123703 Os_TE_123669 Chr7 263886 263887 + JOUZHENA 607 0.0026 (3/1138) 0 * Os_TE_123668 Os_TE_123668 Chr7 263879 263878 - JOUZHENA 607 0.0014 (4/2937) 0 * Os_TE_123669 Os_TE_123665 Chr7 262943 262944 + HARB-N1_OS 2589 0.3082 (918/2979) 0 * * Os_TE_123661 Chr7 260865 260866 + TELIA 141 0.0004 (1/2392) -1 * Os_TE_123660 Os_TE_123660 Chr7 260857 260856 - TELIA 141 0.0004 (1/2397) -1 * Os_TE_123661 Os_TE_123645 Chr7 257094 257093 - ORSgTEMT01600902 239 0.0017 (5/2885) 0 * * Os_TE_123623 Chr7 245859 245858 - GYPSY-A_LTR 8951 0.4767 (440/923) 0 * * Os_TE_123577 Chr7 220331 220332 + AMYLTP 383 0.3051 (903/2960) 0 * Os_TE_123575 Os_TE_123575 Chr7 220316 220315 + ORSgTEMT00800058 376 0.0014 (3/2116) 0 * Os_TE_123577 Os_TE_123571 Chr7 217074 217075 + RIREX_LTR 8828 0.0017 (5/2983) 0 * * Os_TE_123568 Chr7 215184 215185 + RIREX_LTR 8828 0.0003 (1/2946) 0 * Os_TE_123567 Os_TE_123567 Chr7 215180 215179 - RIREX_LTR 8828 0.0003 (1/2936) 0 * Os_TE_123568 Os_TE_123564 Chr7 214496 214497 - RIREX_LTR 8828 0.0007 (2/2991) 0 * Os_TE_123563 Os_TE_123563 Chr7 214492 214491 + RIREX_LTR 8828 0.0007 (2/2993) 0 * Os_TE_123564 Os_TE_123562 Chr7 213465 213466 - ORSiTERTOOT00423 5187 0.0017 (5/2993) 0 * Os_TE_123561 Os_TE_123561 Chr7 213461 213460 + ORSiTERTOOT00423 5187 0.0017 (5/2993) 0 * Os_TE_123562 Os_TE_123543 Chr7 204176 204177 + RIRE5-LTR_OS 6427 0.2904 (843/2903) 0 * Os_TE_123542 Os_TE_123542 Chr7 204175 204174 - RIRE5-LTR_OS 6427 0.3160 (937/2965) 0 * Os_TE_123543 Os_TE_123540 Chr7 203031 203032 + RETROSAT4_LTR 13504 0.0003 (1/2936) 0 * Os_TE_123539 Os_TE_123539 Chr7 203027 203026 - SZ-35LTR 3853 0.0003 (1/2940) 0 * Os_TE_123540 Os_TE_123537 Chr7 201773 201772 + RIREX_LTR 8828 0.0003 (1/2926) 0 * * Os_TE_123492 Chr7 182839 182840 + SZ-62LTR 3649 0.0027 (7/2633) 0 * Os_TE_123491 Os_TE_123491 Chr7 182835 182834 - RETROSAT5_LTR 13878 0.0027 (7/2636) 0 * Os_TE_123492 Os_TE_123489 Chr7 179319 179320 + DS-RICE4N 715 0.3473 (911/2623) 0 * Os_TE_123488 Os_TE_123488 Chr7 179307 179306 + ORSiTETN00100011 676 0.3544 (931/2627) 0 * Os_TE_123489 Os_TE_123487 Chr7 178808 178809 - TRUNCATOR2_LTR 2904 0.0049 (13/2627) 0 * Os_TE_123486 Os_TE_123486 Chr7 178804 178803 + ORSiCMCM00100019 2717 0.0046 (12/2628) 0 * Os_TE_123487 Os_TE_123466 Chr7 154743 152473 - SEVERIN-2 1952 0.0587 (174/2963) 1 Intact * Os_TE_123459 Chr7 151542 151543 + RETRO2A_LTR 12895 0.0224 (67/2997) 0 * Os_TE_123458 Os_TE_123458 Chr7 151538 151537 - RETRO2A_LTR 12895 0.0220 (66/2996) 0 * Os_TE_123459 Os_TE_123456 Chr7 151197 151198 + INDITTO 263 0.1395 (417/2990) 0 * Os_TE_123455 Os_TE_123455 Chr7 151195 151194 - INDITTO 263 0.1423 (424/2979) 0 * Os_TE_123456 Os_TE_123441 Chr7 146607 146606 + RIREX_LTR 8828 0.0003 (1/2963) 0 * * Os_TE_123440 Chr7 146431 146432 - ORSgTETN00200001 10994 0.0756 (224/2963) 0 * Os_TE_123439 Os_TE_123439 Chr7 146429 146428 + SPMLIKE 10989 0.0679 (184/2711) 0 * Os_TE_123440 Os_TE_123404 Chr7 129563 129562 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * * Os_TE_123403 Chr7 129067 129068 + OLO24 345 0.2928 (753/2572) 0 * Os_TE_123402 Os_TE_123402 Chr7 129065 129064 - OLO24 345 0.3055 (915/2995) 0 * Os_TE_123403 Os_TE_123378 Chr7 123240 123241 + STOWAWAY45_OS 266 0.0003 (1/2993) 0 * * Os_TE_123347 Chr7 114112 114111 - Cassandra_OS-LTR 764 0.0796 (236/2963) 0 * * Os_TE_123342 Chr7 112817 112816 + STOWAWAY45_OS 266 0.0007 (2/2992) 0 * Os_TE_123341 Os_TE_123341 Chr7 112814 112815 - STOWAWAY45_OS 266 0.0007 (2/2995) 0 * Os_TE_123342 Os_TE_123321 Chr7 106464 106463 - ORSgTERT00200842 1080 0.0003 (1/2886) 0 * * Os_TE_123318 Chr7 103483 103484 + COPIA2-LTR_OS 6433 0.4164 (1240/2978) 0 * Os_TE_123317 Os_TE_123317 Chr7 103479 103478 - COPIA2-LTR_OS 6433 0.4228 (1266/2994) 0 * Os_TE_123318 Os_TE_123315 Chr7 103048 102786 - INDITTO 263 0.1494 (444/2972) 1 Intact * Os_TE_123286 Chr7 95201 95202 + INDITTO 263 0.0077 (23/2983) 0 * Os_TE_123285 Os_TE_123285 Chr7 95199 95198 - INDITTO 263 0.0071 (21/2977) 0 * Os_TE_123286 Os_TE_123274 Chr7 94038 94039 - RETRO2_LTR 12874 0.0007 (2/2957) 0 * * Os_TE_123227 Chr7 77434 77435 + ORSgTETNOOT01834 251 0.0003 (1/2958) 0 * * Os_TE_123209 Chr7 70869 70870 + RETROSAT2LTR 12796 0.0747 (223/2984) 0 * Os_TE_123208 Os_TE_123208 Chr7 70867 70866 - RETROSAT2LTR 12796 0.0827 (248/2997) 0 * Os_TE_123209 Os_TE_123170 Chr7 52896 52897 - COPIA2-LTR_OS 6433 0.0004 (1/2648) 0 * * Os_TE_123163 Chr7 48816 48817 - RIREX_LTR 8828 0.0003 (1/2980) 0 * Os_TE_123162 Os_TE_123162 Chr7 48812 48811 + RIREX_LTR 8828 0.0003 (1/2982) 0 * Os_TE_123163 Os_TE_123159 Chr7 47408 47409 - TRUNCATOR2_LTR 2904 0.1032 (309/2993) 0 * Os_TE_123158 Os_TE_123158 Chr7 47404 47403 + ORSiCMCM00100019 2717 0.1016 (304/2993) 0 * Os_TE_123159 Os_TE_123154 Chr7 42742 42743 + COPIA2-LTR_OS 6433 0.0012 (2/1604) 0 * Os_TE_123153 Os_TE_123153 Chr7 42738 42737 - COPIA2-LTR_OS 6433 0.0012 (2/1607) 0 * Os_TE_123154 Os_TE_123122 Chr7 21928 21929 - RIREX_LTR 8828 0.0389 (116/2981) 0 * * Os_TE_123102 Chr7 14780 14781 + RIREX_LTR 8828 0.0004 (1/2703) 0 * Os_TE_123101 Os_TE_123101 Chr7 14776 14775 - RIREX_LTR 8828 0.0004 (1/2693) 0 * Os_TE_123102 Os_TE_123084 Chr7 1712 1711 - ORSgTEMT01701882 154 0.3672 (614/1672) 0 * Os_TE_123083 Os_TE_123083 Chr7 1709 1710 + STOWAWAY50_OS 174 0.3743 (631/1686) 0 * Os_TE_123084 Os_TE_263324 Chr6 31235640 31235639 + RIRE3_LTR 12054 0.0018 (5/2841) 0 * * Os_TE_263322 Chr6 31235102 31235101 - RIRE3_LTR 12054 0.7164 (2018/2817) 0 * * Os_TE_263295 Chr6 31221887 31221888 - SC-3_LTR 5748 0.0009 (1/1056) 0 * Os_TE_263294 Os_TE_263294 Chr6 31221883 31221882 + ORSiTERTOOT00296 5553 0.0010 (1/1052) 0 * Os_TE_263295 Os_TE_263263 Chr6 31207133 31207134 + ORSgTETNOOT00908 242 0.0010 (3/2983) 0 * * Os_TE_263208 Chr6 31179371 31179372 + COPI2_LTR 4733 0.0070 (21/2993) 0 * Os_TE_263207 Os_TE_263207 Chr6 31179367 31179366 - COPI2_LTR 4733 0.0073 (22/2996) 0 * Os_TE_263208 Os_TE_263191 Chr6 31169527 31169526 - STOWAWAY51_OS 246 0.0003 (1/2991) 0 * * Os_TE_263155 Chr6 31151375 31151376 - ORSgTEMT00600408 352 0.0010 (3/2997) 0 * Os_TE_263154 Os_TE_263154 Chr6 31151371 31151370 - ORSgTEMT00600304 361 0.0033 (3/920) 0 * Os_TE_263155 Os_TE_263153 Chr6 31151355 31151356 - TESSBIG 4057 0.0003 (1/2992) 0 * Os_TE_263152 Os_TE_263152 Chr6 31151348 31151347 + TESSBIG 4057 0.0003 (1/2955) 0 * Os_TE_263153 Os_TE_263150 Chr6 31151200 31151201 - TELIA 141 0.0003 (1/2993) 0 * Os_TE_263149 Os_TE_263149 Chr6 31151192 31151191 + TELIA 141 0.0004 (1/2230) 0 * Os_TE_263150 Os_TE_263098 Chr6 31116393 31116392 + ORSgTETNOOT00032 218 0.0023 (7/2987) 0 * * Os_TE_263096 Chr6 31115700 31115699 - RETRO1_LTR 8314 0.6671 (1976/2962) 0 * * Os_TE_263063 Chr6 31105162 31105163 - ORSgTETNOOT02417 265 0.6668 (1985/2977) 0 * Os_TE_263062 Os_TE_263062 Chr6 31105160 31105159 - INDITTO 263 0.6671 (1986/2977) 0 * Os_TE_263063 Os_TE_263059 Chr6 31104063 31104062 - NDNA1TNA_OS 334 0.0027 (8/2986) 0 * * Os_TE_263034 Chr6 31089774 31089775 - SC-3_LTR 5748 0.0003 (1/2979) 0 * Os_TE_263033 Os_TE_263033 Chr6 31089770 31089769 + ORSiTERTOOT00296 5553 0.0003 (1/2983) 0 * Os_TE_263034 Os_TE_263031 Chr6 31089367 31089368 - SC-3_LTR 5748 0.0003 (1/2982) 0 * Os_TE_263030 Os_TE_263030 Chr6 31089363 31089362 + ORSiTERTOOT00296 5553 0.0003 (1/2976) 0 * Os_TE_263031 Os_TE_263025 Chr6 31085443 31085444 - SC-3_LTR 5748 0.0007 (2/2994) 0 * Os_TE_263024 Os_TE_263024 Chr6 31085439 31085438 + ORSiTERTOOT00296 5553 0.0007 (2/2993) 0 * Os_TE_263025 Os_TE_263023 Chr6 31081852 31081853 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_263022 Os_TE_263022 Chr6 31081848 31081847 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_263023 Os_TE_263021 Chr6 31081485 31081486 - TRUNCATOR2_LTR 2904 0.0020 (6/2983) 0 * * Os_TE_263010 Chr6 31075083 31075084 + ORSiTERTOOT00296 5553 0.0020 (6/2994) 0 * Os_TE_263009 Os_TE_263009 Chr6 31075079 31075078 - SC-3_LTR 5748 0.0020 (6/2997) 0 * Os_TE_263010 Os_TE_262963 Chr6 31064120 31060203 + SZ-67LTR 1540 0.3326 (785/2360) 1 Intact * Os_TE_262958 Chr6 31059257 31059256 - RETROSAT2LTR 12796 0.0003 (1/2870) 0 * * Os_TE_262937 Chr6 31054936 31054935 - SC-3_LTR 5748 0.0003 (1/2995) 0 * * Os_TE_262926 Chr6 31051567 31051568 - OSTE24 683 0.0020 (6/2985) 0 * Os_TE_262925 Os_TE_262925 Chr6 31051556 31051555 - OSTE24 683 0.0023 (7/2986) 0 * Os_TE_262926 Os_TE_262906 Chr6 31049308 31049309 - ORSgTERT00201216 11284 0.0003 (1/2926) 0 * Os_TE_262905 Os_TE_262905 Chr6 31049304 31049303 - RIRE2_LTR 11306 0.0003 (1/2918) 0 * Os_TE_262906 Os_TE_262894 Chr6 31037879 31037880 - SC-8_LTR 4951 0.0003 (1/2978) 0 * Os_TE_262893 Os_TE_262893 Chr6 31037875 31037874 + SC-8_LTR 4951 0.0003 (1/2976) 0 * Os_TE_262894 Os_TE_262891 Chr6 31036887 31036888 - ORSgTEMT01701882 154 0.0003 (1/2979) 0 * * Os_TE_262872 Chr6 31028138 31028139 - ORSgTETNOOT00754 253 0.0010 (3/2994) 0 * Os_TE_262871 Os_TE_262871 Chr6 31028134 31028133 + ORSgTETNOOT01686 252 0.0010 (3/2995) 0 * Os_TE_262872 Os_TE_262870 Chr6 31026600 31026601 + TWIFBIG 3567 0.0003 (1/2996) 0 * Os_TE_262869 Os_TE_262869 Chr6 31026593 31026592 - ORSiTETNOOT00216 3569 0.0003 (1/2995) 0 * Os_TE_262870 Os_TE_262868 Chr6 31026203 31026204 + SC-7_LTR 4431 0.0003 (1/2983) 0 * Os_TE_262867 Os_TE_262867 Chr6 31026199 31026198 - SC-7_LTR 4431 0.0003 (1/2985) 0 * Os_TE_262868 Os_TE_262853 Chr6 31011886 31011887 - HARB-1_OS 5166 0.0007 (2/2963) 0 * Os_TE_262852 Os_TE_262852 Chr6 31011884 31011883 + HARB-1_OS 5166 0.0007 (2/2968) 0 * Os_TE_262853 Os_TE_262848 Chr6 31007871 31007721 - ORSgTEMT00101421 154 0.2778 (828/2981) 1 Intact * Os_TE_262818 Chr6 30992578 30992579 - HARB-1_OS 5166 0.0003 (1/2974) 0 * Os_TE_262817 Os_TE_262817 Chr6 30992576 30992575 + HARB-1_OS 5166 0.0003 (1/2986) 0 * Os_TE_262818 Os_TE_262816 Chr6 30992065 30992064 - STOWAWAY51_OS 246 0.0757 (224/2959) 0 * Os_TE_262815 Os_TE_262815 Chr6 30992059 30992060 + STOWAWAY51_OS 246 0.0696 (203/2916) 0 * Os_TE_262816 Os_TE_262814 Chr6 30991835 30991836 - OSTE24 683 0.0020 (6/2955) 0 * Os_TE_262813 Os_TE_262813 Chr6 30991825 30991824 - OSTE24 683 0.0024 (7/2961) 0 * Os_TE_262814 Os_TE_262812 Chr6 30991800 30991801 - MPING 430 0.0003 (1/2958) 0 * Os_TE_262811 Os_TE_262811 Chr6 30991798 30991797 + MPING 430 0.0003 (1/2969) 0 * Os_TE_262812 Os_TE_262768 Chr6 30974648 30974647 + RETROSAT4_LTR 13504 0.7200 (2116/2939) 0 * * Os_TE_262726 Chr6 30960807 30960806 + STOWAWAY51_OS 246 0.0010 (3/2995) 0 * Os_TE_262725 Os_TE_262725 Chr6 30960801 30960802 + ORSgTEMT01601591 242 0.0010 (3/2997) 0 * Os_TE_262726 Os_TE_262723 Chr6 30960480 30960481 - RETROSAT4_LTR 13504 0.0020 (6/2990) 0 * Os_TE_262722 Os_TE_262722 Chr6 30960476 30960475 + RETROSAT4_LTR 13504 0.0023 (7/2988) 0 * Os_TE_262723 Os_TE_262711 Chr6 30958356 30958355 - STOWAWAY44_OS 240 0.0003 (1/2994) 0 * Os_TE_262710 Os_TE_262710 Chr6 30958353 30958354 + STOWAWAY44_OS 240 0.0003 (1/2993) 0 * Os_TE_262711 Os_TE_262702 Chr6 30946119 30946120 - SC-8_LTR 4951 0.0003 (1/2988) 0 * Os_TE_262701 Os_TE_262701 Chr6 30946115 30946114 + SC-8_LTR 4951 0.0003 (1/2991) 0 * Os_TE_262702 Os_TE_262681 Chr6 30940782 30940783 - OSTE24 683 0.0023 (7/2986) 0 * Os_TE_262680 Os_TE_262680 Chr6 30940771 30940770 - OSTE24 683 0.0020 (6/2986) 0 * Os_TE_262681 Os_TE_262665 Chr6 30933315 30933316 + COPIA2-LTR_OS 6433 0.0003 (1/2954) 0 * * Os_TE_262663 Chr6 30932723 30932724 - EnSpm-12_OS 12603 0.0017 (5/2939) 0 * Os_TE_262662 Os_TE_262662 Chr6 30932721 30932720 - CACTA-G1 797 0.0017 (5/2941) 0 * Os_TE_262663 Os_TE_262640 Chr6 30928308 30928309 + COPIA2-LTR_OS 6433 0.0003 (1/2954) 0 * Os_TE_262639 Os_TE_262639 Chr6 30928304 30928303 - COPIA2-LTR_OS 6433 0.0003 (1/2950) 0 * Os_TE_262640 Os_TE_262625 Chr6 30923240 30923239 + Cassandra_OS-LTR 764 0.0013 (4/2965) 0 * * Os_TE_262624 Chr6 30923228 30923229 - SZ-48LTR 3632 0.0017 (5/2914) 0 * * Os_TE_262621 Chr6 30921281 30921280 - SZ-35LTR 3853 0.0013 (4/2969) 0 * * Os_TE_262617 Chr6 30920013 30920012 + ORSgTEMT01601934 207 0.0003 (1/2933) 0 * * Os_TE_262606 Chr6 30906545 30906212 + NDNA1TNA_OS 334 0.0964 (288/2988) 1 Intact Os_TE_262605 Os_TE_262605 Chr6 30906212 30906545 - NDNA1TNA_OS 334 0.0971 (290/2988) 1 Intact Os_TE_262606 Os_TE_262602 Chr6 30902997 30902998 - SC-8_LTR 4951 0.0013 (4/2986) 0 * Os_TE_262601 Os_TE_262601 Chr6 30902993 30902992 + SC-8_LTR 4951 0.0013 (4/2987) 0 * Os_TE_262602 Os_TE_262586 Chr6 30892034 30892033 - ORSgTEMT01601834 234 0.0013 (4/2963) 0 * * Os_TE_262577 Chr6 30885212 30885211 + RETROSAT4_LTR 13504 0.0007 (2/2803) 0 * * Os_TE_262572 Chr6 30883630 30883631 + ORSiTERTOOT00074 4935 0.0649 (194/2990) 0 * Os_TE_262571 Os_TE_262571 Chr6 30883626 30883625 - ORSiTERTOOT00074 4935 0.0640 (191/2985) 0 * Os_TE_262572 Os_TE_262560 Chr6 30879382 30879383 - CACTA-H 1152 0.0010 (3/2875) 0 * Os_TE_262559 Os_TE_262559 Chr6 30879380 30879379 + CACTA-H 1152 0.0011 (3/2843) 0 * Os_TE_262560 Os_TE_262549 Chr6 30874970 30871106 - RETROSAT4_LTR 13504 0.0959 (287/2993) 1 Solo_LTR Os_TE_262545 Os_TE_262545 Chr6 30871106 30874973 + RETROSAT4_LTR 13504 0.0981 (294/2996) 1 Solo_LTR Os_TE_262549 Os_TE_262542 Chr6 30868783 30868784 + NDNA1TNA_OS 334 0.0039 (10/2539) 0 * * Os_TE_262541 Chr6 30867158 30867159 + ORSiTERTOOT00020 2547 0.0518 (155/2992) 0 * Os_TE_262540 Os_TE_262540 Chr6 30867154 30867153 - OSCOPIA1_LTR 4754 0.0512 (153/2989) 0 * Os_TE_262541 Os_TE_262538 Chr6 30864104 30863862 + ORSgTEMT01601591 242 0.0971 (290/2988) 1 Intact Os_TE_262537 Os_TE_262537 Chr6 30863862 30864104 - STOWAWAY51_OS 246 0.0942 (281/2983) 1 Intact Os_TE_262538 Os_TE_262536 Chr6 30863773 30863772 - COPI2_LTR 4733 0.0003 (1/2983) 0 * * Os_TE_262530 Chr6 30863254 30863255 - F770 284 0.0657 (195/2969) 0 * Os_TE_262529 Os_TE_262529 Chr6 30863252 30863251 + F770 284 0.0654 (194/2965) 0 * Os_TE_262530 Os_TE_262525 Chr6 30862212 30861799 - ORSgTEMT00300141 415 0.0981 (293/2987) 1 Intact Os_TE_262524 Os_TE_262524 Chr6 30861793 30862212 + ORSgTEMT00300069 394 0.0975 (291/2985) 1 Intact Os_TE_262525 Os_TE_262523 Chr6 30861409 30861408 + RETROSAT4_LTR 13504 0.0318 (95/2985) 0 * * Os_TE_262517 Chr6 30858590 30858591 + MPING 430 0.0003 (1/2982) 0 * Os_TE_262516 Os_TE_262516 Chr6 30858588 30858587 - MPING 430 0.0003 (1/2977) 0 * Os_TE_262517 Os_TE_262508 Chr6 30856932 30856933 - SZ-48LTR 3632 0.0087 (25/2870) 0 * Os_TE_262507 Os_TE_262507 Chr6 30856928 30856927 + SZ-48LTR 3632 0.0091 (26/2867) 0 * Os_TE_262508 Os_TE_262506 Chr6 30856899 30856900 - Cassandra_OS-LTR 764 0.0017 (5/2934) 0 * * Os_TE_262489 Chr6 30851921 30851922 + AMYLTP 383 0.2379 (710/2984) 0 * Os_TE_262488 Os_TE_262488 Chr6 30851913 30851912 - AMYLTP 383 0.2378 (709/2981) 0 * Os_TE_262489 Os_TE_262475 Chr6 30848247 30848248 + DS-RICE2N 613 0.0023 (7/2989) 0 * Os_TE_262474 Os_TE_262474 Chr6 30848240 30848239 - DS-RICE2N 613 0.0023 (7/2989) 0 * Os_TE_262475 Os_TE_262473 Chr6 30848097 30848098 + COPIA2-LTR_OS 6433 0.0003 (1/2983) 0 * Os_TE_262472 Os_TE_262472 Chr6 30848093 30848092 - COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * Os_TE_262473 Os_TE_262471 Chr6 30848012 30848013 - TELIA 141 0.0003 (1/2987) 0 * Os_TE_262470 Os_TE_262470 Chr6 30848004 30848003 + TELIA 141 0.0003 (1/2988) 0 * Os_TE_262471 Os_TE_262467 Chr6 30847251 30847252 - COPI2_LTR 4733 0.0003 (1/2995) 0 * * Os_TE_262452 Chr6 30839563 30839564 - COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * Os_TE_262451 Os_TE_262451 Chr6 30839559 30839558 + COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * Os_TE_262452 Os_TE_262445 Chr6 30837206 30837207 - RIREX_LTR 8828 0.0018 (5/2799) 0 * Os_TE_262444 Os_TE_262444 Chr6 30837202 30837201 + RIREX_LTR 8828 0.0014 (4/2814) 0 * Os_TE_262445 Os_TE_262442 Chr6 30836860 30836859 - ORSgTEMT01601834 234 0.6093 (1815/2979) 0 * Os_TE_262441 Os_TE_262441 Chr6 30836857 30836858 - ORSgTEMT01601493 303 0.6044 (1800/2978) 0 * Os_TE_262442 Os_TE_262425 Chr6 30831218 30831217 + SINE1OS 127 0.0034 (10/2949) 0 * * Os_TE_262416 Chr6 30828147 30828148 + SZ-52_LTR 13107 0.0024 (7/2970) 0 * * Os_TE_262375 Chr6 30813360 30813361 + SC-8_LTR 4951 0.0007 (2/2993) 0 * Os_TE_262374 Os_TE_262374 Chr6 30813356 30813355 - SC-8_LTR 4951 0.0007 (2/2997) 0 * Os_TE_262375 Os_TE_262367 Chr6 30802374 30802375 - SC-8_LTR 4951 0.0013 (4/2997) 0 * Os_TE_262366 Os_TE_262366 Chr6 30802370 30802369 + SC-8_LTR 4951 0.0013 (4/2995) 0 * Os_TE_262367 Os_TE_262365 Chr6 30799583 30799584 + TWIF 586 0.0003 (1/2957) 0 * * Os_TE_262348 Chr6 30795084 30795085 - AMYLTP 383 0.0017 (5/2961) 0 * * Os_TE_262346 Chr6 30794250 30794249 + CASTAWAY 364 0.3753 (1092/2910) 0 * * Os_TE_262345 Chr6 30794242 30794243 - ORSgTEMT00600085 364 0.8862 (2632/2970) 0 * * Os_TE_262344 Chr6 30792698 30792699 - TELIA 141 0.0075 (22/2942) 0 * Os_TE_262343 Os_TE_262343 Chr6 30792690 30792689 + TELIA 141 0.0071 (21/2948) 0 * Os_TE_262344 Os_TE_262342 Chr6 30791715 30791714 + MDR2 6967 0.0064 (19/2965) 0 * * Os_TE_262329 Chr6 30788255 30788254 + ORSgTETNOOT00032 218 0.0728 (217/2981) 0 * * Os_TE_262325 Chr6 30787585 30787586 + AMYLTP 383 0.0017 (5/2874) 0 * Os_TE_262324 Os_TE_262324 Chr6 30787577 30787576 - AMYLTP 383 0.0017 (5/2882) 0 * Os_TE_262325 Os_TE_262297 Chr6 30779641 30779642 - MuDR2_OS 6770 0.2277 (675/2965) 0 * Os_TE_262296 Os_TE_262296 Chr6 30779633 30779632 - MuDR2_OS 6770 0.2303 (684/2970) 0 * Os_TE_262297 Os_TE_262274 Chr6 30761327 30761328 - HARB-1_OS 5166 0.0003 (1/2998) 0 * Os_TE_262273 Os_TE_262273 Chr6 30761325 30761324 + HARB-1_OS 5166 0.0003 (1/2998) 0 * Os_TE_262274 Os_TE_262214 Chr6 30518611 30518612 - ORSgTEMT00600085 364 0.0003 (1/2985) 0 * * Os_TE_262210 Chr6 30517956 30517957 + COPIA2-LTR_OS 6433 0.0010 (3/2953) 0 * * Os_TE_262207 Chr6 30517912 30517913 - COPIA2-LTR_OS 6433 0.0003 (1/2946) 0 * Os_TE_262206 Os_TE_262206 Chr6 30517908 30517907 + COPIA2-LTR_OS 6433 0.0003 (1/2944) 0 * Os_TE_262207 Os_TE_262205 Chr6 30517281 30516948 - NDNA1TNA_OS 334 0.1838 (550/2993) 1 Intact Os_TE_262204 Os_TE_262204 Chr6 30516948 30517281 + NDNA1TNA_OS 334 0.1819 (543/2985) 1 Intact Os_TE_262205 Os_TE_262203 Chr6 30516762 30516763 - RIREX_LTR 8828 0.0003 (1/2993) 0 * Os_TE_262202 Os_TE_262202 Chr6 30516758 30516757 + RIREX_LTR 8828 0.0003 (1/2994) 0 * Os_TE_262203 Os_TE_262199 Chr6 30512310 30512311 + OSMU5 4881 0.0017 (5/2983) 0 * Os_TE_262198 Os_TE_262198 Chr6 30512302 30512301 + OSMU5 4881 0.0017 (5/2980) 0 * Os_TE_262199 Os_TE_262185 Chr6 30504788 30504789 - AMYLTP 383 0.0017 (5/2923) 0 * Os_TE_262184 Os_TE_262184 Chr6 30504780 30504779 + AMYLTP 383 0.0014 (4/2922) 0 * Os_TE_262185 Os_TE_262180 Chr6 30504124 30504123 + RIREX_LTR 8828 0.0007 (2/2947) 0 * * Os_TE_262177 Chr6 30502569 30502570 - SZ-25LTR 330 0.0013 (4/2982) 0 * Os_TE_262176 Os_TE_262176 Chr6 30502565 30502564 + COPI1_LTR 4721 0.0017 (5/2985) 0 * Os_TE_262177 Os_TE_262175 Chr6 30499697 30499698 - SC-8_LTR 4951 0.0003 (1/2997) 0 * Os_TE_262174 Os_TE_262174 Chr6 30499693 30499692 + SC-8_LTR 4951 0.0003 (1/2997) 0 * Os_TE_262175 Os_TE_262163 Chr6 30489862 30489863 - COPIA2-LTR_OS 6433 0.0018 (5/2748) 0 * * Os_TE_262158 Chr6 30486676 30486675 + MERMITEH 1307 0.0003 (1/2916) 0 * * Os_TE_262121 Chr6 30470882 30470883 + DEBOAT 110 0.0013 (4/2993) 0 * * Os_TE_262119 Chr6 30470657 30470656 + ORSgTEMT00700017 386 0.0003 (1/2999) 0 * * Os_TE_262116 Chr6 30469029 30468812 - ORSgTEMT02400246 177 0.1478 (441/2984) 1 Intact Os_TE_262115 Os_TE_262115 Chr6 30468805 30469027 - ORSgTEMT02400064 212 0.1468 (438/2983) 1 Intact Os_TE_262116 Os_TE_262095 Chr6 30445857 30445856 + STOWAWAY51_OS 246 0.0003 (1/2984) 0 * Os_TE_262094 Os_TE_262094 Chr6 30445851 30445852 + ORSgTEMT01601591 242 0.0003 (1/2989) 0 * Os_TE_262095 Os_TE_262093 Chr6 30445493 30445494 - SC-8_LTR 4951 0.0007 (2/2994) 0 * Os_TE_262092 Os_TE_262092 Chr6 30445489 30445488 + SC-8_LTR 4951 0.0010 (3/2993) 0 * Os_TE_262093 Os_TE_262089 Chr6 30444213 30444214 + ORSgTETNOOT01834 251 0.0003 (1/2988) 0 * * Os_TE_262084 Chr6 30434824 30423516 + RIRE2_LTR 11306 0.1475 (442/2996) 1 Intact * Os_TE_262076 Chr6 30419964 30419963 - STOWAWAY51_OS 246 0.0077 (23/2994) 0 * Os_TE_262075 Os_TE_262075 Chr6 30419958 30419959 + STOWAWAY51_OS 246 0.0073 (22/2997) 0 * Os_TE_262076 Os_TE_262067 Chr6 30410367 30410368 - SC-3_LTR 5748 0.0003 (1/2989) 0 * Os_TE_262066 Os_TE_262066 Chr6 30410363 30410362 + ORSiTERTOOT00296 5553 0.0003 (1/2993) 0 * Os_TE_262067 Os_TE_262052 Chr6 30406823 30406824 - HARB-1_OS 5166 0.0010 (3/2940) 0 * * Os_TE_262041 Chr6 30405282 30405283 - MPING 430 0.0003 (1/2991) 0 * Os_TE_262040 Os_TE_262040 Chr6 30405280 30405279 + MPING 430 0.0003 (1/2989) 0 * Os_TE_262041 Os_TE_262032 Chr6 30404187 30404186 - COPI2_LTR 4733 0.0003 (1/2923) 0 * * Os_TE_262026 Chr6 30403562 30403561 + SINE1OS 127 0.8664 (2581/2979) 0 * * Os_TE_262022 Chr6 30396205 30396204 + ORSgTEMT01400031 216 0.0075 (22/2938) 0 * Os_TE_262021 Os_TE_262021 Chr6 30396183 30396184 - ORSgTEMT01400011 212 0.0071 (21/2956) 0 * Os_TE_262022 Os_TE_262018 Chr6 30395469 30395470 - SZ-40LTR 2465 0.0014 (4/2950) 0 * Os_TE_262017 Os_TE_262017 Chr6 30395465 30395464 + GYPSY-A_LTR 8951 0.0014 (4/2948) 0 * Os_TE_262018 Os_TE_262010 Chr6 30394204 30387912 - OSLINE1_2 6317 0.1325 (394/2973) 1 Intact * Os_TE_262009 Chr6 30387709 30387708 + ORSgTEMT01601122 212 0.0071 (21/2970) 0 * Os_TE_262008 Os_TE_262008 Chr6 30387706 30387707 + ORSgTEMT01601122 212 0.0064 (19/2959) 0 * Os_TE_262009 Os_TE_262006 Chr6 30387095 30387096 + AMYLTP 383 0.0017 (5/2989) 0 * Os_TE_262005 Os_TE_262005 Chr6 30387087 30387086 - AMYLTP 383 0.0017 (5/2992) 0 * Os_TE_262006 Os_TE_262004 Chr6 30385281 30385282 - SC-3_LTR 5748 0.0020 (6/2995) 0 * Os_TE_262003 Os_TE_262003 Chr6 30385277 30385276 + ORSiTERTOOT00296 5553 0.0020 (6/2994) 0 * Os_TE_262004 Os_TE_261985 Chr6 30380228 30380229 - SC-3_LTR 5748 0.0003 (1/2991) 0 * Os_TE_261984 Os_TE_261984 Chr6 30380224 30380223 + ORSiTERTOOT00296 5553 0.0003 (1/2993) 0 * Os_TE_261985 Os_TE_261972 Chr6 30377466 30377467 - SC-3_LTR 5748 0.0010 (3/2992) 0 * Os_TE_261971 Os_TE_261971 Chr6 30377462 30377461 + ORSiTERTOOT00296 5553 0.0010 (3/2983) 0 * Os_TE_261972 Os_TE_261960 Chr6 30374117 30374118 + SC-8_LTR 4951 0.0003 (1/2989) 0 * Os_TE_261959 Os_TE_261959 Chr6 30374113 30374112 - SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_261960 Os_TE_261958 Chr6 30371028 30371029 - TEMPINDAS 4259 0.0037 (11/2994) 0 * * Os_TE_261957 Chr6 30370970 30370971 - ORSiTETNOOT00216 3569 0.0003 (1/2997) 0 * Os_TE_261956 Os_TE_261956 Chr6 30370963 30370962 + TWIFBIG 3567 0.0003 (1/2987) 0 * Os_TE_261957 Os_TE_261938 Chr6 30352112 30352111 + ORSgTETN00200005 1121 0.8601 (2489/2894) 0 * Os_TE_261937 Os_TE_261937 Chr6 30352108 30352109 + CACTA-B 1103 0.8647 (2569/2971) 0 * Os_TE_261938 Os_TE_261936 Chr6 30351659 30351660 + MPING 430 0.0003 (1/2997) 0 * Os_TE_261935 Os_TE_261935 Chr6 30351657 30351656 - MPING 430 0.0003 (1/2997) 0 * Os_TE_261936 Os_TE_261920 Chr6 30343814 30343815 - ORSgTETNOOT00754 253 0.0003 (1/2996) 0 * Os_TE_261919 Os_TE_261919 Chr6 30343812 30343811 + ORSgTETNOOT01834 251 0.0003 (1/2993) 0 * Os_TE_261920 Os_TE_261916 Chr6 30340294 30340293 + RIREX_LTR 8828 0.0017 (5/2995) 0 * * Os_TE_261908 Chr6 30332281 30332282 - TYPEM 227 0.0044 (13/2981) 0 * Os_TE_261907 Os_TE_261907 Chr6 30332280 30332279 - ORSgTEMT02400179 221 0.0034 (10/2983) 0 * Os_TE_261908 Os_TE_261892 Chr6 30324433 30324434 - ORSgTEMT00900099 250 0.0010 (3/2991) 0 * * Os_TE_261891 Chr6 30324107 30324108 - ORSgTEMT00900467 235 0.0013 (4/2984) 0 * Os_TE_261890 Os_TE_261890 Chr6 30324100 30324099 - ORSgTEMT00901471 236 0.0017 (5/2981) 0 * Os_TE_261891 Os_TE_261867 Chr6 30320804 30320805 + ORSgTEMT01601525 239 0.0017 (5/2971) 0 * * Os_TE_261832 Chr6 30297982 30297983 + COPI2_LTR 4733 0.0431 (128/2970) 0 * Os_TE_261831 Os_TE_261831 Chr6 30297978 30297977 - COPI2_LTR 4733 0.0416 (124/2980) 0 * Os_TE_261832 Os_TE_261819 Chr6 30293780 30293779 - RIREX_LTR 8828 0.0010 (3/2927) 0 * * Os_TE_261818 Chr6 30293675 30282337 - ORSgTEMT02000063 217 0.1161 (341/2936) 1 Intact * Os_TE_261786 Chr6 30267366 30267367 - ORSgTEMT01601208 238 0.0004 (1/2753) 0 * * Os_TE_261755 Chr6 30257926 30257927 + Mudr5_OS 5952 0.0017 (5/2928) 0 * * Os_TE_261742 Chr6 30242357 30242358 + ORSgTEMT00501366 147 0.2774 (228/822) 0 * * Os_TE_261734 Chr6 30234464 30231326 + ORSiCMCM00100019 2717 0.6195 (363/586) 1 Intact Os_TE_261730 Os_TE_261730 Chr6 30231326 30234210 + TRUNCATOR 2918 0.6258 (373/596) 1 Intact Os_TE_261734 Os_TE_261714 Chr6 30221757 30221758 + OSTE33 1012 0.0070 (4/572) 0 * * Os_TE_261695 Chr6 30208606 30208607 - SZ-67LTR 1540 0.0325 (96/2957) 0 * * Os_TE_261688 Chr6 30207625 30207624 + OsSN3 183 0.0017 (5/2987) 0 * * Os_TE_261666 Chr6 30199586 30199587 - DITAILA 257 0.0017 (5/2970) 0 * * Os_TE_261660 Chr6 30197624 30197625 + ORSgTETNOOT02019 240 0.0003 (1/2994) 0 * Os_TE_261659 Os_TE_261659 Chr6 30197622 30197621 + ORSgTETNOOT00908 242 0.0003 (1/2996) 0 * Os_TE_261660 Os_TE_261657 Chr6 30197511 30197510 - MPING 430 0.0007 (2/2992) 0 * * Os_TE_261653 Chr6 30195377 30195378 - COPIA2-LTR_OS 6433 0.0004 (1/2742) 0 * * Os_TE_261646 Chr6 30192830 30192829 + TYPEH 309 0.0017 (5/2982) 0 * * Os_TE_261633 Chr6 30191713 30191714 + ORSiTERTOOT00174 2237 0.0004 (1/2853) 0 * * Os_TE_261630 Chr6 30190345 30190346 + RETROSAT4_LTR 13504 0.0007 (2/2977) 0 * Os_TE_261629 Os_TE_261629 Chr6 30190341 30190340 - SZ-35LTR 3853 0.0007 (2/2969) 0 * Os_TE_261630 Os_TE_261628 Chr6 30189859 30189860 + ORSiCMCM00100019 2717 0.0007 (2/2981) 0 * * Os_TE_261601 Chr6 30174718 30174719 + ORSiTERTOOT00296 5553 0.0003 (1/2976) 0 * Os_TE_261600 Os_TE_261600 Chr6 30174714 30174713 - SC-3_LTR 5748 0.0003 (1/2978) 0 * Os_TE_261601 Os_TE_261583 Chr6 30168396 30168158 - ORSgTEMT01601696 238 0.1091 (324/2969) 1 Intact * Os_TE_261578 Chr6 30166546 30166545 + ORSgTEMT00600360 369 0.0024 (7/2963) 0 * * Os_TE_261577 Chr6 30165412 30165411 + CACTA-B 1103 0.0021 (6/2897) 0 * Os_TE_261576 Os_TE_261576 Chr6 30165411 30165412 - ORSgTETN00200001 10994 0.0017 (5/2907) 0 * Os_TE_261577 Os_TE_261569 Chr6 30160745 30160746 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * * Os_TE_261559 Chr6 30156433 30150755 - ORSgTETN00200001 10994 0.0987 (292/2958) 1 Intact Os_TE_261558 Os_TE_261558 Chr6 30150755 30156433 + SPMLIKE 10989 0.1111 (332/2987) 1 Intact Os_TE_261559 Os_TE_261557 Chr6 30149217 30149218 - STOWAWAY44_OS 240 0.0003 (1/2949) 0 * * Os_TE_261541 Chr6 30145203 30145204 + ORSgTETNOOT02316 263 0.0007 (2/2993) 0 * Os_TE_261540 Os_TE_261540 Chr6 30145201 30145200 - INDITTO 263 0.0007 (2/2992) 0 * Os_TE_261541 Os_TE_261539 Chr6 30144757 30144758 + ORSiTERTOOT00402 2660 0.0003 (1/2995) 0 * Os_TE_261538 Os_TE_261538 Chr6 30144753 30144752 - ORSiTERTOOT00402 2660 0.0003 (1/2997) 0 * Os_TE_261539 Os_TE_261513 Chr6 30120305 30120306 + ORSiTERTOOT00226 792 0.0162 (48/2955) 0 * * Os_TE_261511 Chr6 30120254 30120255 + RETRO1_LTR 8314 0.0007 (2/2910) 0 * Os_TE_261510 Os_TE_261510 Chr6 30120250 30120249 - RETRO2_LTR 12874 0.0007 (2/2920) 0 * Os_TE_261511 Os_TE_261509 Chr6 30119616 30119617 - MuDR4_OS 7610 0.0007 (2/2994) 0 * Os_TE_261508 Os_TE_261508 Chr6 30119608 30119607 - MuDR4_OS 7610 0.0007 (2/2994) 0 * Os_TE_261509 Os_TE_261495 Chr6 30115106 30115107 - COPI2_LTR 4733 0.0003 (1/2991) 0 * * Os_TE_261488 Chr6 30113164 30113165 + ORSgTEMT00300063 413 0.0004 (1/2778) 0 * * Os_TE_261447 Chr6 30103748 30103747 - DS-RICE2N 613 0.0040 (5/1248) 0 * Os_TE_261446 Os_TE_261446 Chr6 30103745 30103746 + DS-RICE4N 715 0.0013 (4/2980) 0 * Os_TE_261447 Os_TE_261442 Chr6 30100948 30100949 + RIRE2_LTR 11306 0.0003 (1/2971) 0 * Os_TE_261441 Os_TE_261441 Chr6 30100944 30100943 - RIRE2_LTR 11306 0.0003 (1/2974) 0 * Os_TE_261442 Os_TE_261435 Chr6 30099185 30099186 + RETROSAT4_LTR 13504 0.2225 (663/2980) 0 * Os_TE_261434 Os_TE_261434 Chr6 30099181 30099180 - Cassandra_OS-LTR 764 0.2294 (687/2995) 0 * Os_TE_261435 Os_TE_261426 Chr6 30095900 30095899 - STOWAWAY51_OS 246 0.0077 (23/2991) 0 * Os_TE_261425 Os_TE_261425 Chr6 30095894 30095895 + STOWAWAY51_OS 246 0.0077 (23/2988) 0 * Os_TE_261426 Os_TE_261421 Chr6 30092970 30092969 - SZ-38 8643 0.0004 (1/2721) 0 * * Os_TE_261388 Chr6 30073939 30073940 + ORSgTEMT01600403 239 0.0017 (5/2993) 0 * * Os_TE_261380 Chr6 30067372 30067373 - TWIFB1 3737 0.0010 (3/2997) 0 * Os_TE_261379 Os_TE_261379 Chr6 30067365 30067364 + TWIFB1 3737 0.0007 (2/2997) 0 * Os_TE_261380 Os_TE_261378 Chr6 30067334 30067333 + MERMITE 1401 0.0043 (13/2995) 0 * Os_TE_261377 Os_TE_261377 Chr6 30067326 30067327 - MERMITE 1401 0.0043 (13/2992) 0 * Os_TE_261378 Os_TE_261360 Chr6 30057003 30057004 - ORSgTEMT00100799 337 0.0017 (5/2991) 0 * * Os_TE_261351 Chr6 30053219 30053218 + COPI2_LTR 4733 0.0017 (5/2886) 0 * * Os_TE_261327 Chr6 30048811 30048810 - TESS 244 0.5788 (1631/2818) 0 * * Os_TE_261315 Chr6 30043648 30043647 - ORSgTEMT00700002 381 0.0003 (1/2934) 0 * Os_TE_261314 Os_TE_261314 Chr6 30043642 30043643 - ORSgTEMT00700002 381 0.0003 (1/2936) 0 * Os_TE_261315 Os_TE_261313 Chr6 30042913 30042912 + ORSgTEMT04600032 273 0.0017 (5/2939) 0 * * Os_TE_261292 Chr6 30029592 30029591 + ORSiTEMT00300001 383 0.0605 (181/2990) 0 * * Os_TE_261291 Chr6 30029519 30029520 + ORSgTEMT00300063 413 0.0607 (181/2982) 0 * * Os_TE_261288 Chr6 30028305 30028306 - RIREX_LTR 8828 0.0013 (4/2977) 0 * Os_TE_261287 Os_TE_261287 Chr6 30028301 30028300 + RIREX_LTR 8828 0.0013 (4/2979) 0 * Os_TE_261288 Os_TE_261262 Chr6 30008055 29999454 - MuDR3_OS 8604 0.1063 (318/2992) 1 Intact Os_TE_261255 Os_TE_261255 Chr6 29999450 30008055 + MuDR3_OS 8604 0.1056 (316/2992) 1 Intact Os_TE_261262 Os_TE_261247 Chr6 29996274 29996275 - ORSiTETNOOT00134 607 0.0007 (2/2998) 0 * Os_TE_261246 Os_TE_261246 Chr6 29996267 29996266 + TWIF 586 0.0007 (2/2997) 0 * Os_TE_261247 Os_TE_261244 Chr6 29996106 29996107 + COWARD-2 350 0.0020 (6/2995) 0 * * Os_TE_261219 Chr6 29983372 29983373 - ORSgTERT00201216 11284 0.1140 (328/2877) 0 * * Os_TE_261215 Chr6 29983151 29983150 + STOWAWAY21_OS 243 0.0014 (4/2948) 0 * * Os_TE_261209 Chr6 29982055 29982056 - NDNA1TNA_OS 334 0.0014 (4/2927) 0 * Os_TE_261208 Os_TE_261208 Chr6 29982054 29982053 + NDNA1TNA_OS 334 0.0014 (4/2899) 0 * Os_TE_261209 Os_TE_261199 Chr6 29973858 29973857 + STOWAWAY44_OS 240 0.0010 (3/2988) 0 * Os_TE_261198 Os_TE_261198 Chr6 29973855 29973856 - STOWAWAY44_OS 240 0.0010 (3/2983) 0 * Os_TE_261199 Os_TE_261197 Chr6 29973329 29973330 - NDNA1TNA_OS 334 0.0012 (3/2497) 0 * Os_TE_261196 Os_TE_261196 Chr6 29973327 29973326 + NDNA1TNA_OS 334 0.0012 (3/2520) 0 * Os_TE_261197 Os_TE_261193 Chr6 29972468 29972467 + ORSiTERTOOT00402 2660 0.0003 (1/2991) 0 * * Os_TE_261192 Chr6 29972029 29972030 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_261191 Os_TE_261191 Chr6 29972025 29972024 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_261192 Os_TE_261189 Chr6 29968908 29968909 + SC-8_LTR 4951 0.0003 (1/2987) 0 * Os_TE_261188 Os_TE_261188 Chr6 29968904 29968903 - SC-8_LTR 4951 0.0003 (1/2990) 0 * Os_TE_261189 Os_TE_261178 Chr6 29964543 29964544 - SC-8_LTR 4951 0.0003 (1/2991) 0 * Os_TE_261177 Os_TE_261177 Chr6 29964539 29964538 + SC-8_LTR 4951 0.0003 (1/2993) 0 * Os_TE_261178 Os_TE_261176 Chr6 29964302 29964303 + ORSiTERTOOT00296 5553 0.0003 (1/2987) 0 * Os_TE_261175 Os_TE_261175 Chr6 29964298 29964297 - SC-3_LTR 5748 0.0003 (1/2991) 0 * Os_TE_261176 Os_TE_261171 Chr6 29960934 29960935 - ORSiTETNOOT00134 607 0.0003 (1/2994) 0 * Os_TE_261170 Os_TE_261170 Chr6 29960927 29960926 + TWIF 586 0.0003 (1/2994) 0 * Os_TE_261171 Os_TE_261168 Chr6 29958231 29958232 - SC-3_LTR 5748 0.0003 (1/2991) 0 * Os_TE_261167 Os_TE_261167 Chr6 29958227 29958226 + ORSiTERTOOT00296 5553 0.0003 (1/2988) 0 * Os_TE_261168 Os_TE_261160 Chr6 29949240 29949239 - ORSgTEMT00400010 151 0.0007 (2/2985) 0 * * Os_TE_261148 Chr6 29945552 29945551 - OSTONOR1_LTR 6440 0.0027 (8/2992) 0 * * Os_TE_261142 Chr6 29936924 29936923 - ORSgTEMT02900061 318 0.0142 (5/351) 0 * * Os_TE_261138 Chr6 29927126 29927127 + MPING 430 0.0003 (1/2983) 0 * Os_TE_261137 Os_TE_261137 Chr6 29927124 29927123 - MPING 430 0.0003 (1/2985) 0 * Os_TE_261138 Os_TE_261136 Chr6 29926841 29926842 - ORSgTEMT02600002 356 0.0010 (3/2989) 0 * * Os_TE_261134 Chr6 29926092 29926091 - SZ-22_LTR 4403 0.1063 (130/1223) 0 * * Os_TE_261133 Chr6 29925979 29925980 + SZ-48LTR 3632 0.0024 (3/1235) 0 * * Os_TE_261130 Chr6 29924366 29924365 + ORSiTERTOOT00361 5627 0.1093 (134/1226) 0 * * Os_TE_261129 Chr6 29924300 29924299 - NDNA1TNA_OS 334 0.0024 (3/1242) 0 * * Os_TE_261128 Chr6 29924132 29924133 + ORSgTEMT00100272 356 0.0024 (3/1251) 0 * * Os_TE_261127 Chr6 29923936 29923937 - CLOUD 734 0.0008 (1/1248) 0 * * Os_TE_261115 Chr6 29905861 29905860 + ORSgTEMT02400206 225 0.0027 (8/2987) 0 * Os_TE_261114 Os_TE_261114 Chr6 29905860 29905861 - TYPEM 227 0.0027 (8/2990) 0 * Os_TE_261115 Os_TE_261110 Chr6 29899554 29905070 - SC-5 3770 0.1111 (333/2997) 1 Intact * Os_TE_261094 Chr6 29889471 29889470 - MERMITED 1572 0.0010 (3/2971) 0 * * Os_TE_261078 Chr6 29887364 29887363 + ORSgTEMT01601591 242 0.0050 (15/2996) 0 * Os_TE_261077 Os_TE_261077 Chr6 29887358 29887359 + STOWAWAY51_OS 246 0.0050 (15/2997) 0 * Os_TE_261078 Os_TE_261076 Chr6 29886441 29886442 - OLO24 345 0.0010 (3/2984) 0 * * Os_TE_261059 Chr6 29872251 29872252 + OSTE33 1012 0.0010 (3/2995) 0 * Os_TE_261058 Os_TE_261058 Chr6 29872242 29872241 + OSTE33 1012 0.0007 (2/2995) 0 * Os_TE_261059 Os_TE_261026 Chr6 29856067 29869726 + RIRE5-LTR_OS 6427 0.1096 (328/2993) 1 Intact * Os_TE_261025 Chr6 29855931 29855932 - COPIA2-LTR_OS 6433 0.0027 (8/2990) 0 * Os_TE_261024 Os_TE_261024 Chr6 29855927 29855926 + COPIA2-LTR_OS 6433 0.0010 (3/2986) 0 * Os_TE_261025 Os_TE_260954 Chr6 29837121 29837122 - RETRO2_LTR 12874 0.0040 (12/2984) 0 * * Os_TE_260949 Chr6 29836446 29836447 + SZ-48LTR 3632 0.0007 (2/2946) 0 * Os_TE_260948 Os_TE_260948 Chr6 29836442 29836441 - SZ-48LTR 3632 0.0007 (2/2947) 0 * Os_TE_260949 Os_TE_260926 Chr6 29828209 29828210 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * * Os_TE_260921 Chr6 29827251 29827252 + SZ-67LTR 1540 0.7156 (2076/2901) 0 * Os_TE_260920 Os_TE_260920 Chr6 29827247 29827246 - SZ-67LTR 1540 0.7252 (2169/2991) 0 * Os_TE_260921 Os_TE_260902 Chr6 29821971 29821972 + CLOUD-7 495 0.0007 (2/2961) 0 * * Os_TE_260895 Chr6 29820909 29820910 - ORSgTETNOOT00053 263 0.0574 (171/2981) 0 * Os_TE_260894 Os_TE_260894 Chr6 29820907 29820906 - INDITTO 263 0.0587 (175/2979) 0 * Os_TE_260895 Os_TE_260893 Chr6 29820693 29820694 - OSTE33 1012 0.1086 (307/2828) 0 * * Os_TE_260892 Chr6 29820666 29820665 + SZ-40LTR 2465 0.8252 (2365/2866) 0 * * Os_TE_260891 Chr6 29820661 29820662 - SZ-48LTR 3632 0.7953 (2374/2985) 0 * Os_TE_260890 Os_TE_260890 Chr6 29820657 29820656 + SZ-48LTR 3632 0.8087 (2359/2917) 0 * Os_TE_260891 Os_TE_260889 Chr6 29820460 29819380 + RETRO2A_LTR 12895 0.1086 (324/2983) 1 Solo_LTR Os_TE_260888 Os_TE_260888 Chr6 29819380 29820460 - RETRO2_LTR 12874 0.1078 (322/2987) 1 Solo_LTR Os_TE_260889 Os_TE_260886 Chr6 29818777 29818776 + SZ-48LTR 3632 0.0027 (8/2989) 0 * * Os_TE_260885 Chr6 29818364 29818365 + RETRO2_LTR 12874 0.1012 (302/2985) 0 * Os_TE_260884 Os_TE_260884 Chr6 29818360 29818359 - RETRO2_LTR 12874 0.1031 (308/2986) 0 * Os_TE_260885 Os_TE_260883 Chr6 29817431 29817430 - MERMITED 1572 0.0010 (3/2975) 0 * * Os_TE_260869 Chr6 29813891 29813890 + ORSgTEMT00501329 143 0.0007 (2/2944) 0 * * Os_TE_260863 Chr6 29811888 29811887 - TNR2A 152 0.0034 (10/2980) 0 * * Os_TE_260850 Chr6 29800200 29800201 + OSTONOR1_LTR 6440 0.0003 (1/2997) 0 * Os_TE_260849 Os_TE_260849 Chr6 29800196 29800195 - ORSiTERT00100062 5674 0.0003 (1/2997) 0 * Os_TE_260850 Os_TE_260843 Chr6 29795353 29795354 - WANDERER 232 0.1292 (386/2987) 0 * * Os_TE_260842 Chr6 29795269 29795268 - COPI2_LTR 4733 0.0003 (1/2993) 0 * * Os_TE_260837 Chr6 29793847 29793848 - STOWAWAY43_OS 233 0.8715 (2156/2474) 0 * * Os_TE_260835 Chr6 29793220 29793219 - ORSgTEMT06000260 151 0.0004 (1/2610) -1 * * Os_TE_260827 Chr6 29787812 29787813 - COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_260826 Os_TE_260826 Chr6 29787808 29787807 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_260827 Os_TE_260810 Chr6 29776624 29776625 + SC-8_LTR 4951 0.0024 (7/2970) 0 * Os_TE_260809 Os_TE_260809 Chr6 29776620 29776619 - SC-8_LTR 4951 0.0024 (7/2967) 0 * Os_TE_260810 Os_TE_260808 Chr6 29776314 29776315 - COPI2_LTR 4733 0.0426 (126/2959) 0 * Os_TE_260807 Os_TE_260807 Chr6 29776310 29776309 + COPI2_LTR 4733 0.0404 (119/2949) 0 * Os_TE_260808 Os_TE_260805 Chr6 29769930 29769931 + ORSgTETNOOT01930 140 0.0010 (3/2984) 0 * Os_TE_260804 Os_TE_260804 Chr6 29769928 29769927 - ORSgTEMT00501447 126 0.0007 (2/2985) 0 * Os_TE_260805 Os_TE_260792 Chr6 29761882 29761881 - ORSgTEMT02400064 212 0.1426 (419/2939) 0 * Os_TE_260791 Os_TE_260791 Chr6 29761872 29761873 - ORSgTEMT02400148 214 0.1486 (426/2866) 0 * Os_TE_260792 Os_TE_260789 Chr6 29758661 29758662 + TELIA 141 0.1010 (302/2990) 0 * * Os_TE_260781 Chr6 29756274 29756273 + ORSgTEMT01601591 242 0.0017 (5/2999) 0 * Os_TE_260780 Os_TE_260780 Chr6 29756268 29756269 + STOWAWAY51_OS 246 0.0017 (5/2998) 0 * Os_TE_260781 Os_TE_260758 Chr6 29742790 29742789 + ORSgTEMT00500201 140 0.0010 (3/2984) 0 * Os_TE_260757 Os_TE_260757 Chr6 29742779 29742780 + ORSgTEMT00502171 134 0.0010 (3/2983) 0 * Os_TE_260758 Os_TE_260732 Chr6 29723481 29723482 - SC-7_LTR 4431 0.0017 (5/2980) 0 * Os_TE_260731 Os_TE_260731 Chr6 29723477 29723476 + SC-7_LTR 4431 0.0017 (5/2982) 0 * Os_TE_260732 Os_TE_260729 Chr6 29722249 29722250 - ORSgTETNOOT00053 263 0.1381 (407/2948) 0 * Os_TE_260728 Os_TE_260728 Chr6 29722247 29722246 - INDITTO 263 0.1359 (401/2950) 0 * Os_TE_260729 Os_TE_260727 Chr6 29722107 29722108 - INDITTO 263 0.0017 (5/2957) 0 * Os_TE_260726 Os_TE_260726 Chr6 29722105 29722104 + INDITTO 263 0.0017 (5/2963) 0 * Os_TE_260727 Os_TE_260724 Chr6 29721372 29721371 + F770 284 0.1363 (404/2965) 0 * * Os_TE_260713 Chr6 29719750 29719749 - ORSgTEMT01400019 216 0.0010 (3/2984) 0 * Os_TE_260712 Os_TE_260712 Chr6 29719745 29719746 + ORSgTEMT01400031 216 0.0010 (3/2989) 0 * Os_TE_260713 Os_TE_260704 Chr6 29716996 29716995 + ORSgTEMT00501222 152 0.0003 (1/2995) 0 * * Os_TE_260676 Chr6 29708721 29708720 + INDITTO 263 0.0010 (3/2987) 0 * * Os_TE_260674 Chr6 29704211 29704212 - ORSgTEMT02500039 210 0.0010 (3/2990) 0 * Os_TE_260673 Os_TE_260673 Chr6 29704205 29704204 + OSTE30 529 0.0010 (3/2990) 0 * Os_TE_260674 Os_TE_260670 Chr6 29702922 29702921 + ORSgTEMT02700001 255 0.0007 (2/2992) 0 * * Os_TE_260623 Chr6 29693496 29693497 - NDNA1TNA_OS 334 0.0003 (1/2988) 0 * Os_TE_260622 Os_TE_260622 Chr6 29693494 29693493 + NDNA1TNA_OS 334 0.0003 (1/2986) 0 * Os_TE_260623 Os_TE_260615 Chr6 29691952 29691953 + MPING 430 0.0003 (1/2945) 0 * Os_TE_260614 Os_TE_260614 Chr6 29691950 29691949 - MPING 430 0.0003 (1/2928) 0 * Os_TE_260615 Os_TE_260613 Chr6 29690205 29690204 - ORSgTEMT06100010 269 0.1330 (396/2978) 0 * * Os_TE_260612 Chr6 29690156 29690157 + ORSgTEMT06100010 269 0.2202 (657/2984) 0 * Os_TE_260611 Os_TE_260611 Chr6 29690154 29690153 - ORSgTEMT06100010 269 0.0993 (260/2618) 0 * Os_TE_260612 Os_TE_260610 Chr6 29689774 29689775 - RIRE2_LTR 11306 0.0003 (1/2872) 0 * Os_TE_260609 Os_TE_260609 Chr6 29689768 29689767 + RIRE2_LTR 11306 0.0005 (1/2133) 0 * Os_TE_260610 Os_TE_260599 Chr6 29687281 29687280 + ORSgTEMT00101620 161 0.0007 (2/2816) 0 * * Os_TE_260588 Chr6 29683849 29683848 + ORSiTERTOOT00296 5553 0.0010 (3/2939) 0 * * Os_TE_260582 Chr6 29676223 29676224 + STOWAWAY21_OS 243 0.0003 (1/2877) 0 * Os_TE_260581 Os_TE_260581 Chr6 29676219 29676218 + OSTONOR1_LTR 6440 0.0003 (1/2966) 0 * Os_TE_260582 Os_TE_260580 Chr6 29676191 29676190 - ORSgTEMT01601834 234 0.8267 (2423/2931) 0 * * Os_TE_260548 Chr6 29657023 29657024 - MPING 430 0.0007 (2/2986) 0 * Os_TE_260547 Os_TE_260547 Chr6 29657021 29657020 + MPING 430 0.0007 (2/2989) 0 * Os_TE_260548 Os_TE_260542 Chr6 29654823 29654822 + INDITTO 263 0.0386 (115/2982) 0 * * Os_TE_260525 Chr6 29651668 29651669 - MPING 430 0.0007 (2/2967) 0 * Os_TE_260524 Os_TE_260524 Chr6 29651666 29651665 + MPING 430 0.0007 (2/2972) 0 * Os_TE_260525 Os_TE_260505 Chr6 29647171 29647172 + MPING 430 0.0003 (1/2987) 0 * * Os_TE_260503 Chr6 29646823 29646824 + COPI2_LTR 4733 0.0003 (1/2979) 0 * Os_TE_260502 Os_TE_260502 Chr6 29646819 29646818 - COPI2_LTR 4733 0.0003 (1/2980) 0 * Os_TE_260503 Os_TE_260446 Chr6 29637311 29637310 - ORSgTEMT06000292 191 0.0012 (2/1732) 0 * * Os_TE_260418 Chr6 29633182 29633183 - COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_260417 Os_TE_260417 Chr6 29633178 29633177 + COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_260418 Os_TE_260394 Chr6 29622646 29622645 - MERMITED 1572 0.0003 (1/2984) 0 * * Os_TE_260391 Chr6 29620979 29620978 - MERMITED 1572 0.0010 (3/2989) 0 * * Os_TE_260341 Chr6 29590297 29590296 + ORSgTETNOOT00908 242 0.0014 (4/2942) 0 * * Os_TE_260335 Chr6 29587236 29587237 + ORSgTEMT00600376 329 0.0013 (4/2972) 0 * Os_TE_260334 Os_TE_260334 Chr6 29587231 29587230 + ORSgTEMT00600272 361 0.0013 (4/2967) 0 * Os_TE_260335 Os_TE_260331 Chr6 29586611 29586610 - SINE9_OS 293 0.0017 (5/2968) 0 * * Os_TE_260330 Chr6 29585825 29585826 - COPIA2-LTR_OS 6433 0.0003 (1/2980) 0 * * Os_TE_260313 Chr6 29576949 29576950 + RETROSAT4_LTR 13504 0.0003 (1/2985) 0 * * Os_TE_260310 Chr6 29575275 29575276 + COPI2_LTR 4733 0.0007 (2/2980) 0 * Os_TE_260309 Os_TE_260309 Chr6 29575271 29575270 - COPI2_LTR 4733 0.0007 (2/2980) 0 * Os_TE_260310 Os_TE_260305 Chr6 29573307 29573308 + ORSgTEMT04600037 279 0.7448 (2084/2798) 0 * * Os_TE_260303 Chr6 29572994 29572995 - RIRE2_LTR 11306 0.0037 (11/2973) 0 * * Os_TE_260302 Chr6 29572018 29572019 - MERMITE18B 1306 0.0010 (3/2944) 0 * Os_TE_260301 Os_TE_260301 Chr6 29572012 29572011 + MERMITEB 1610 0.0014 (4/2948) 0 * Os_TE_260302 Os_TE_260296 Chr6 29570120 29570119 - INDITTO 263 0.0003 (1/2869) 0 * * Os_TE_260285 Chr6 29569219 29569594 - TYPEH 309 0.2573 (717/2787) 1 Intact * Os_TE_260284 Chr6 29569082 29568968 + SZ-58LTR 114 0.2312 (636/2751) 1 Intact Os_TE_260282 Os_TE_260282 Chr6 29568968 29569082 - SZ-58LTR 114 0.2507 (616/2457) 1 Intact Os_TE_260284 Os_TE_260278 Chr6 29566087 29565853 + ORSgTEMT01601445 230 0.3026 (718/2373) 1 Intact * Os_TE_260276 Chr6 29564969 29564968 - COPIA2-LTR_OS 6433 0.0003 (1/2896) 0 * * Os_TE_260272 Chr6 29564100 29564247 + STOWAWAY47_OS 148 0.2464 (737/2991) 1 Intact * Os_TE_260270 Chr6 29563801 29563802 - MPING 430 0.0010 (3/2995) 0 * Os_TE_260269 Os_TE_260269 Chr6 29563799 29563798 + MPING 430 0.0010 (3/2906) 0 * Os_TE_260270 Os_TE_260255 Chr6 29560196 29560197 - ORSgTETNOOT01992 270 0.0023 (3/1323) 0 * * Os_TE_260253 Chr6 29558972 29559575 - JOUZHENA 607 0.2345 (666/2840) 1 Intact * Os_TE_260243 Chr6 29555269 29555268 - RIRE3A_LTR 10580 0.1122 (321/2862) 0 * * Os_TE_260234 Chr6 29553277 29553276 - TRUNCATOR 2918 0.1097 (313/2854) 0 * Os_TE_260233 Os_TE_260233 Chr6 29553276 29553277 + TRUNCATOR 2918 0.1101 (315/2862) 0 * Os_TE_260234 Os_TE_260221 Chr6 29551565 29547697 - RETROSAT4_LTR 13504 0.2384 (681/2856) 1 Solo_LTR * Os_TE_260213 Chr6 29546342 29546343 + OSTE33 1012 0.0003 (1/2858) 0 * Os_TE_260212 Os_TE_260212 Chr6 29546333 29546332 - OSTE33 1012 0.0004 (1/2857) 0 * Os_TE_260213 Os_TE_260208 Chr6 29545741 29545742 + ORSiCMCM00100019 2717 0.0260 (74/2841) 0 * Os_TE_260207 Os_TE_260207 Chr6 29545737 29545736 - TRUNCATOR2_LTR 2904 0.0326 (93/2855) 0 * Os_TE_260208 Os_TE_260181 Chr6 29541593 29541594 + ORSgTETNOOT02443 527 0.0014 (4/2851) 0 * Os_TE_260180 Os_TE_260180 Chr6 29541591 29541590 - ORSgTEMT01800062 435 0.0014 (4/2844) 0 * Os_TE_260181 Os_TE_260170 Chr6 29537121 29537120 - ORSgTEMT00700002 381 0.0007 (2/2993) 0 * Os_TE_260169 Os_TE_260169 Chr6 29537114 29537115 + ORSgTEMT00700017 386 0.0010 (3/2974) 0 * Os_TE_260170 Os_TE_260150 Chr6 29526131 29526132 + OsSN3 183 0.0014 (4/2933) 0 * * Os_TE_260146 Chr6 29525280 29525279 - COPIA2-LTR_OS 6433 0.0003 (1/2955) 0 * * Os_TE_260131 Chr6 29516087 29515824 - STOWAWAY45_OS 266 0.2553 (739/2895) 1 Intact Os_TE_260130 Os_TE_260130 Chr6 29515824 29516087 + STOWAWAY45_OS 266 0.2515 (726/2887) 1 Intact Os_TE_260131 Os_TE_260108 Chr6 29496054 29496053 - LINE-7_OS 7090 0.0007 (2/2910) 0 * * Os_TE_260082 Chr6 29490605 29490606 - HARB-1_OS 5166 0.0071 (21/2957) 0 * * Os_TE_260081 Chr6 29490353 29490354 + RETRO2A_LTR 12895 0.0167 (48/2882) 0 * Os_TE_260080 Os_TE_260080 Chr6 29490349 29490348 - RETRO1_LTR 8314 0.0162 (48/2964) 0 * Os_TE_260081 Os_TE_260079 Chr6 29489443 29489442 - ORMOSIA 482 0.7163 (2136/2982) 0 * * Os_TE_260078 Chr6 29489244 29489245 + ORSgTEMT01701418 151 0.6987 (1969/2818) 0 * * Os_TE_260077 Chr6 29489096 29488756 + ORSgTEMT00101674 340 0.3199 (882/2757) 1 Intact * Os_TE_260072 Chr6 29487255 29487014 + STOWAWAY51_OS 246 0.8896 (725/815) 1 Intact * Os_TE_260069 Chr6 29486494 29487008 - OSTE30 529 0.3337 (868/2601) 1 Intact * Os_TE_260065 Chr6 29485821 29485822 + TWIF 586 0.0958 (85/887) 0 * Os_TE_260064 Os_TE_260064 Chr6 29485814 29485813 - ORSiTETNOOT00134 607 0.0947 (84/887) 0 * Os_TE_260065 Os_TE_260060 Chr6 29482475 29482322 + WUWU 113 0.2935 (850/2896) 1 Intact Os_TE_260058 Os_TE_260058 Chr6 29482322 29482475 + WUWU 113 0.2569 (725/2822) 1 Intact Os_TE_260060 Os_TE_260053 Chr6 29473569 29473570 - SC-8_LTR 4951 0.0003 (1/2991) 0 * Os_TE_260052 Os_TE_260052 Chr6 29473565 29473564 + SC-8_LTR 4951 0.0003 (1/2996) 0 * Os_TE_260053 Os_TE_260042 Chr6 29472090 29472091 - RETRO2A_LTR 12895 0.0003 (1/2887) 0 * Os_TE_260041 Os_TE_260041 Chr6 29472086 29472085 + RETRO1_LTR 8314 0.0010 (3/2889) 0 * Os_TE_260042 Os_TE_260033 Chr6 29471148 29467569 - ORSiTETNOOT00200 3563 0.2393 (541/2261) -1 Intact * Os_TE_260021 Chr6 29459332 29459333 + RIREX_LTR 8828 0.0014 (3/2160) 0 * * Os_TE_259998 Chr6 29448997 29448998 + TWIF 586 0.0003 (1/2987) 0 * * Os_TE_259996 Chr6 29448241 29448093 - STOWAWAY46_OS 154 0.2713 (803/2960) 1 Intact * Os_TE_259974 Chr6 29432227 29432228 - TYPEM 227 0.0004 (1/2726) 0 * Os_TE_259973 Os_TE_259973 Chr6 29432226 29432225 - ORSgTEMT02400179 221 0.0004 (1/2746) 0 * Os_TE_259974 Os_TE_259958 Chr6 29415011 29415012 + TOS17LTR 138 0.0013 (4/2992) 0 * Os_TE_259957 Os_TE_259957 Chr6 29415007 29415006 - TOS17LTR 138 0.0013 (4/2990) 0 * Os_TE_259958 Os_TE_259940 Chr6 29411640 29411639 - STOWAWAY51_OS 246 0.0007 (2/2978) 0 * Os_TE_259939 Os_TE_259939 Chr6 29411634 29411635 + STOWAWAY51_OS 246 0.0010 (3/2973) 0 * Os_TE_259940 Os_TE_259931 Chr6 29408210 29408211 + TWIFB1 3737 0.0003 (1/2960) 0 * * Os_TE_259929 Chr6 29407705 29407704 - INDITTO 263 0.3063 (911/2974) 0 * * Os_TE_259916 Chr6 29403048 29403049 + COPI2_LTR 4733 0.0392 (117/2988) 0 * Os_TE_259915 Os_TE_259915 Chr6 29403044 29403043 - COPI2_LTR 4733 0.0394 (118/2995) 0 * Os_TE_259916 Os_TE_259912 Chr6 29399597 29399342 - ORSgTETNOOT00303 256 0.2609 (781/2993) 1 Intact Os_TE_259911 Os_TE_259911 Chr6 29399341 29399603 + INDITTO 263 0.2618 (782/2987) 1 Intact Os_TE_259912 Os_TE_259909 Chr6 29398258 29398257 + ORSgTETNOOT00908 242 0.0017 (5/2987) 0 * * Os_TE_259908 Chr6 29398136 29398137 - F569 228 0.0821 (242/2947) 0 * Os_TE_259907 Os_TE_259907 Chr6 29398134 29398133 + F569 228 0.0886 (265/2990) 0 * Os_TE_259908 Os_TE_259902 Chr6 29397373 29397604 + ORSgTETNOOT01219 231 0.2650 (791/2985) 1 Intact * Os_TE_259884 Chr6 29387995 29387994 - INDITTO 263 0.3423 (966/2822) 0 * * Os_TE_259860 Chr6 29378755 29378756 + RETROSAT2LTR 12796 0.0007 (2/2995) 0 * Os_TE_259859 Os_TE_259859 Chr6 29378753 29378752 - RETROSAT2LTR 12796 0.0007 (2/2997) 0 * Os_TE_259860 Os_TE_259855 Chr6 29377029 29373903 + RETROSAT2LTR 12796 0.2701 (808/2991) 1 Solo_LTR * Os_TE_259847 Chr6 29372742 29372741 - TRUNCATOR 2918 0.0020 (6/2998) 0 * Os_TE_259846 Os_TE_259846 Chr6 29372741 29372742 + TRUNCATOR 2918 0.0020 (6/2998) 0 * Os_TE_259847 Os_TE_259843 Chr6 29371206 29371207 + OSTE33 1012 0.0014 (1/735) 0 * Os_TE_259842 Os_TE_259842 Chr6 29371204 29371203 + OSTE33 1012 0.1711 (432/2525) 0 * Os_TE_259843 Os_TE_259841 Chr6 29371107 29370504 + TWIF 586 0.0302 (84/2780) 1 Intact * Os_TE_259808 Chr6 29347423 29347422 + RIREX_LTR 8828 0.0004 (1/2710) 0 * * Os_TE_259791 Chr6 29344363 29344722 + CASTAWAY 364 0.3270 (735/2248) 1 Intact * Os_TE_259783 Chr6 29340176 29331700 - RIREX_LTR 8828 0.0294 (88/2989) 1 Intact Os_TE_259782 Os_TE_259782 Chr6 29331700 29340176 + RIREX_LTR 8828 0.0301 (90/2986) 1 Intact Os_TE_259783 Os_TE_259780 Chr6 29331534 29331533 + RIREX_LTR 8828 0.0003 (1/2918) 0 * * Os_TE_259766 Chr6 29330520 29317415 - RIRE2_LTR 11306 0.2456 (733/2985) 1 Intact * Os_TE_259746 Chr6 29239426 29239425 + ORSgTEMT02400041 225 0.0003 (1/2990) 0 * Os_TE_259745 Os_TE_259745 Chr6 29239422 29239423 - ORSgTEMT02400246 177 0.0003 (1/2992) 0 * Os_TE_259746 Os_TE_259740 Chr6 29229600 29229599 - ORSgTEMT01400022 212 0.7577 (2239/2955) 0 * * Os_TE_259739 Chr6 29229388 29229389 - RETRO2_LTR 12874 0.0509 (67/1316) 0 * * Os_TE_259737 Chr6 29229370 29229369 - ORSgTEMT00600524 364 0.7404 (2036/2750) 0 * * Os_TE_259736 Chr6 29229362 29229363 + ORSgTEMT00600448 360 0.7618 (2255/2960) 0 * Os_TE_259735 Os_TE_259735 Chr6 29229361 29229360 - ORSgTEMT00600524 364 0.0843 (70/830) 0 * Os_TE_259736 Os_TE_259733 Chr6 29228379 29228380 + INDITTO 263 0.1002 (300/2995) 0 * Os_TE_259732 Os_TE_259732 Chr6 29228377 29228376 - INDITTO 263 0.0993 (297/2992) 0 * Os_TE_259733 Os_TE_259725 Chr6 29223015 29222773 + ORSgTEMT01400031 216 0.2413 (721/2988) 1 Intact * Os_TE_259721 Chr6 29222671 29222456 - TYPEM 227 0.2484 (726/2923) 1 Intact * Os_TE_259718 Chr6 29222445 29222446 - ORSgTETNOOT00053 263 0.0027 (8/2989) 0 * * Os_TE_259716 Chr6 29222252 29222253 + INDITTO 263 0.0013 (4/2965) 0 * Os_TE_259715 Os_TE_259715 Chr6 29222250 29222249 - INDITTO 263 0.0013 (4/2987) 0 * Os_TE_259716 Os_TE_259714 Chr6 29222133 29222134 + INDITTO 263 0.5086 (1513/2975) 0 * Os_TE_259713 Os_TE_259713 Chr6 29222131 29222130 - INDITTO 263 0.5093 (1512/2969) 0 * Os_TE_259714 Os_TE_259712 Chr6 29222096 29222095 - STOWAWAY51_OS 246 0.0084 (24/2862) 0 * * Os_TE_259705 Chr6 29221507 29221243 + F524 291 0.2432 (729/2998) 1 Intact Os_TE_259704 Os_TE_259704 Chr6 29221243 29221506 - F524 291 0.2494 (744/2983) 1 Intact Os_TE_259705 Os_TE_259701 Chr6 29220481 29220482 - Cassandra_OS-LTR 764 0.0003 (1/2985) 0 * Os_TE_259700 Os_TE_259700 Chr6 29220477 29220476 + Cassandra_OS-LTR 764 0.0007 (2/2966) 0 * Os_TE_259701 Os_TE_259699 Chr6 29220387 29220386 - F524 291 0.0017 (5/2908) 0 * * Os_TE_259698 Chr6 29220332 29220331 - F524 291 0.6506 (1320/2029) 0 * * Os_TE_259695 Chr6 29219223 29219224 - MPING 430 0.0003 (1/2978) 0 * Os_TE_259694 Os_TE_259694 Chr6 29219221 29219220 + MPING 430 0.0007 (2/2964) 0 * Os_TE_259695 Os_TE_259690 Chr6 29217455 29217456 + STOWAWAY11_OS 292 0.7624 (2259/2963) 0 * Os_TE_259689 Os_TE_259689 Chr6 29217454 29217453 - STOWAWAY11_OS 292 0.7572 (2202/2908) 0 * Os_TE_259690 Os_TE_259688 Chr6 29217320 29217319 - STOWAWAY11_OS 292 0.7645 (2272/2972) 0 * Os_TE_259687 Os_TE_259687 Chr6 29217307 29217308 + STOWAWAY11_OS 292 0.7561 (2185/2890) 0 * Os_TE_259688 Os_TE_259685 Chr6 29217231 29217230 - ORSgTEMT02400246 177 0.0003 (1/2988) 0 * Os_TE_259684 Os_TE_259684 Chr6 29217230 29217231 - TYPEM 227 0.0003 (1/2993) 0 * Os_TE_259685 Os_TE_259648 Chr6 29209409 29209408 + ORSgTEMT00100291 345 0.0003 (1/2991) 0 * * Os_TE_259644 Chr6 29207176 29207177 + SPMLIKE 10989 0.0311 (93/2994) 0 * Os_TE_259643 Os_TE_259643 Chr6 29207174 29207173 - ORSgTETN00200001 10994 0.0288 (86/2990) 0 * Os_TE_259644 Os_TE_259637 Chr6 29204638 29204639 - RIRE5-LTR_OS 6427 0.0020 (6/2986) 0 * Os_TE_259636 Os_TE_259636 Chr6 29204631 29204630 + RIRE5-LTR_OS 6427 0.0013 (4/2985) 0 * Os_TE_259637 Os_TE_259629 Chr6 29203608 29203609 - ORSgTEMT00600192 355 0.0008 (2/2576) 0 * * Os_TE_259624 Chr6 29202082 29202083 - SZ-22_LTR 4403 0.0004 (1/2857) 0 * Os_TE_259623 Os_TE_259623 Chr6 29202078 29202077 + ORSiTERTOOT00034 791 0.0004 (1/2844) 0 * Os_TE_259624 Os_TE_259622 Chr6 29201958 29201957 - OSLINE1-4 4779 0.0017 (5/2943) 0 * * Os_TE_259613 Chr6 29197936 29197937 - CASTAWAY 364 0.0013 (4/2992) 0 * Os_TE_259612 Os_TE_259612 Chr6 29197933 29197932 - ORSgTEMT00600304 361 0.0013 (4/2987) 0 * Os_TE_259613 Os_TE_259580 Chr6 29188504 29188505 - RETRO2_LTR 12874 0.7122 (2091/2936) 0 * * Os_TE_259556 Chr6 29179747 29179748 + ORSgTEMT00501279 126 0.0273 (23/842) 0 * * Os_TE_259552 Chr6 29178481 29178594 - ORSgTEMT01700029 143 0.2755 (825/2995) 1 Intact * Os_TE_259543 Chr6 29169999 29169998 + ORSgTEMT01601591 242 0.0003 (1/2998) 0 * Os_TE_259542 Os_TE_259542 Chr6 29169996 29169997 - STOWAWAY51_OS 246 0.0003 (1/2997) 0 * Os_TE_259543 Os_TE_259526 Chr6 29165904 29165905 + ORSiTERTOOT00296 5553 0.0003 (1/2993) 0 * * Os_TE_259513 Chr6 29159690 29159689 + ORSgTEMT01601591 242 0.0020 (4/1957) 0 * * Os_TE_259512 Chr6 29159686 29159687 - MPING 430 0.0003 (1/2869) 0 * Os_TE_259511 Os_TE_259511 Chr6 29159684 29159683 + HARB-1_OS 5166 0.0463 (137/2962) 0 * Os_TE_259512 Os_TE_259510 Chr6 29159656 29159657 - HARB-1_OS 5166 0.0462 (138/2989) 0 * * Os_TE_259491 Chr6 29155703 29155704 - RIRE2_LTR 11306 0.0007 (2/2984) 0 * Os_TE_259490 Os_TE_259490 Chr6 29155699 29155698 + RIRE2_LTR 11306 0.0010 (3/2980) 0 * Os_TE_259491 Os_TE_259489 Chr6 29155502 29155503 - MPING 430 0.0003 (1/2994) 0 * Os_TE_259488 Os_TE_259488 Chr6 29155500 29155499 + MPING 430 0.0003 (1/2995) 0 * Os_TE_259489 Os_TE_259481 Chr6 29153854 29153855 + ORSgTETNOOT00908 242 0.0030 (9/2989) 0 * Os_TE_259480 Os_TE_259480 Chr6 29153848 29153847 + ORSgTETNOOT01219 231 0.0030 (9/2986) 0 * Os_TE_259481 Os_TE_259468 Chr6 29151822 29151823 - COPI2_LTR 4733 0.0117 (35/2998) 0 * Os_TE_259467 Os_TE_259467 Chr6 29151818 29151817 + COPI2_LTR 4733 0.0113 (34/2998) 0 * Os_TE_259468 Os_TE_259454 Chr6 29144564 29144563 + MPING 430 0.0005 (1/2193) 0 * * Os_TE_259452 Chr6 29143861 29143862 - SZ-55_LTR 10318 0.0010 (3/2976) 0 * Os_TE_259451 Os_TE_259451 Chr6 29143857 29143856 + SZ-55_LTR 10318 0.0010 (3/2971) 0 * Os_TE_259452 Os_TE_259449 Chr6 29142919 29142918 + COPI2_LTR 4733 0.0003 (1/2995) 0 * * Os_TE_259442 Chr6 29140118 29140119 + RIREX_LTR 8828 0.0013 (4/2964) 0 * Os_TE_259441 Os_TE_259441 Chr6 29140114 29140113 - RIREX_LTR 8828 0.0013 (4/2979) 0 * Os_TE_259442 Os_TE_259438 Chr6 29137741 29137742 - INDITTO 263 0.0127 (38/2984) 0 * Os_TE_259437 Os_TE_259437 Chr6 29137739 29137738 + INDITTO 263 0.0124 (37/2979) 0 * Os_TE_259438 Os_TE_259428 Chr6 29131980 29131979 + ORSiTERTOOT00226 792 0.0013 (4/2992) 0 * * Os_TE_259330 Chr6 29076660 29076659 + NDNA1TNA_OS 334 0.0007 (2/2992) 0 * Os_TE_259329 Os_TE_259329 Chr6 29076659 29076660 - NDNA1TNA_OS 334 0.0003 (1/2995) 0 * Os_TE_259330 Os_TE_259326 Chr6 29076343 29076344 + MuDR2_OS 6770 0.0154 (46/2985) 0 * Os_TE_259325 Os_TE_259325 Chr6 29076334 29076333 - MuDR2_OS 6770 0.0057 (17/2957) 0 * Os_TE_259326 Os_TE_259320 Chr6 29072690 29072691 - RIRE2_LTR 11306 0.0003 (1/2993) 0 * Os_TE_259319 Os_TE_259319 Chr6 29072686 29072685 + RIRE2_LTR 11306 0.0003 (1/2989) 0 * Os_TE_259320 Os_TE_259313 Chr6 29072100 29072099 + COPI2_LTR 4733 0.0007 (2/2912) 0 * * Os_TE_259312 Chr6 29071905 29071906 - TELIA 141 0.1229 (365/2969) 0 * * Os_TE_259304 Chr6 29069602 29069603 - ORSiTERTOOT00441 4741 0.0003 (1/2996) 0 * Os_TE_259303 Os_TE_259303 Chr6 29069598 29069597 + ORSiTERTOOT00441 4741 0.0003 (1/2996) 0 * Os_TE_259304 Os_TE_259277 Chr6 29056663 29056662 + ORSgTEMT00600124 361 0.0131 (39/2970) 0 * * Os_TE_259262 Chr6 29050834 29050833 + MPING 430 0.0003 (1/2954) 0 * * Os_TE_259249 Chr6 29047937 29047938 + HARB-1_OS 5166 0.0017 (5/2989) 0 * Os_TE_259248 Os_TE_259248 Chr6 29047935 29047934 - HARB-1_OS 5166 0.0017 (5/2989) 0 * Os_TE_259249 Os_TE_259240 Chr6 29043900 29043901 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_259239 Os_TE_259239 Chr6 29043896 29043895 - COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_259240 Os_TE_259226 Chr6 29041601 29041602 + RETROSAT4_LTR 13504 0.6151 (1804/2933) 0 * Os_TE_259225 Os_TE_259225 Chr6 29041597 29041596 - RETROSAT4_LTR 13504 0.6210 (1847/2974) 0 * Os_TE_259226 Os_TE_259178 Chr6 29020294 29020293 - ORSgTEMT02400179 221 0.0003 (1/2965) 0 * * Os_TE_259138 Chr6 28997530 28997531 + SZ-62LTR 3649 0.1144 (335/2929) 0 * Os_TE_259137 Os_TE_259137 Chr6 28997526 28997525 - SZ-62LTR 3649 0.1311 (389/2968) 0 * Os_TE_259138 Os_TE_259136 Chr6 28997408 28997407 - ORSgTEMT02400246 177 0.0010 (3/2904) 0 * Os_TE_259135 Os_TE_259135 Chr6 28997407 28997408 - TYPEM 227 0.0007 (2/2890) 0 * Os_TE_259136 Os_TE_259100 Chr6 28983717 28983718 + CASTAWAY-3 314 0.3002 (897/2988) 0 * * Os_TE_259072 Chr6 28968585 28968586 + RIREX_LTR 8828 0.0003 (1/2986) 0 * Os_TE_259071 Os_TE_259071 Chr6 28968581 28968580 - RIREX_LTR 8828 0.0003 (1/2981) 0 * Os_TE_259072 Os_TE_259069 Chr6 28965072 28965073 + ORSiTERTOOT00381 4988 0.0003 (1/2992) 0 * Os_TE_259068 Os_TE_259068 Chr6 28965068 28965067 - SC-8_LTR 4951 0.0003 (1/2995) 0 * Os_TE_259069 Os_TE_259057 Chr6 28959834 28959835 - OSLINE1-2 7128 0.0007 (2/2992) 0 * * Os_TE_259046 Chr6 28951059 28951060 - RIREX_LTR 8828 0.0003 (1/2996) 0 * Os_TE_259045 Os_TE_259045 Chr6 28951055 28951054 + RIREX_LTR 8828 0.0003 (1/2993) 0 * Os_TE_259046 Os_TE_259039 Chr6 28941165 28941166 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * * Os_TE_259037 Chr6 28940109 28939143 + SZ-9LTR 965 0.3036 (904/2978) 1 Intact * Os_TE_259035 Chr6 28933710 28934674 - SZ-9LTR 965 0.3028 (903/2982) 1 Intact * Os_TE_259013 Chr6 28930669 28930670 + ORSgTEMT00901202 248 0.0007 (2/2994) 0 * * Os_TE_259010 Chr6 28927585 28927586 + SZ-55_LTR 10318 0.0010 (3/2994) 0 * * Os_TE_259004 Chr6 28927009 28927008 + ORSiTERTOOT00402 2660 0.0003 (1/2994) 0 * * Os_TE_259003 Chr6 28926619 28926620 - ORSiTERTOOT00441 4741 0.0007 (2/2996) 0 * Os_TE_259002 Os_TE_259002 Chr6 28926615 28926614 + ORSiTERTOOT00441 4741 0.0007 (2/2997) 0 * Os_TE_259003 Os_TE_258996 Chr6 28924458 28924459 - SZ-35LTR 3853 0.0015 (4/2742) 0 * Os_TE_258995 Os_TE_258995 Chr6 28924454 28924453 + RETROSAT4_LTR 13504 0.0004 (1/2541) 0 * Os_TE_258996 Os_TE_258987 Chr6 28919939 28919940 + COPIA2-LTR_OS 6433 0.0003 (1/2983) 0 * Os_TE_258986 Os_TE_258986 Chr6 28919935 28919934 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_258987 Os_TE_258985 Chr6 28919881 28919725 - UNIQUE 158 0.3001 (896/2986) 1 Intact Os_TE_258984 Os_TE_258984 Chr6 28919725 28919881 + UNIQUE 158 0.3009 (900/2991) 1 Intact Os_TE_258985 Os_TE_258980 Chr6 28918466 28918467 + MERMITEA 1710 0.7087 (2117/2987) 0 * Os_TE_258979 Os_TE_258979 Chr6 28918458 28918457 + MERMITEA 1710 0.6921 (1976/2855) 0 * Os_TE_258980 Os_TE_258974 Chr6 28916533 28916532 - ORSgTEMT00900099 250 0.0003 (1/2990) 0 * Os_TE_258973 Os_TE_258973 Chr6 28916529 28916530 - ORSgTEMT00900811 214 0.0007 (2/2980) 0 * Os_TE_258974 Os_TE_258958 Chr6 28910347 28910348 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_258957 Os_TE_258957 Chr6 28910343 28910342 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_258958 Os_TE_258956 Chr6 28910214 28910215 + ORSgTETNOOT01930 140 0.0020 (6/2994) 0 * Os_TE_258955 Os_TE_258955 Chr6 28910212 28910211 - ORSgTEMT00501447 126 0.0020 (6/2992) 0 * Os_TE_258956 Os_TE_258954 Chr6 28909986 28909985 - COPI2_LTR 4733 0.0007 (2/2990) 0 * * Os_TE_258947 Chr6 28908940 28908939 + SZ-4_LTR 5991 0.0003 (1/2869) 0 * * Os_TE_258926 Chr6 28897961 28897962 - ORSiTERTOOT00404 4839 0.1710 (511/2989) 0 * Os_TE_258925 Os_TE_258925 Chr6 28897957 28897956 + ORSiTERTOOT00404 4839 0.1691 (506/2993) 0 * Os_TE_258926 Os_TE_258905 Chr6 28892252 28892251 - COPI2_LTR 4733 0.0003 (1/2998) 0 * * Os_TE_258883 Chr6 28873663 28873662 - RETROSAT4_LTR 13504 0.0003 (1/2995) 0 * * Os_TE_258878 Chr6 28865772 28865773 - RIREX_LTR 8828 0.0007 (2/2988) 0 * Os_TE_258877 Os_TE_258877 Chr6 28865768 28865767 + RIREX_LTR 8828 0.0007 (2/2986) 0 * Os_TE_258878 Os_TE_258872 Chr6 28861407 28861406 - SZ-35LTR 3853 0.7023 (2102/2993) 0 * * Os_TE_258869 Chr6 28858495 28858496 - ORSiTERT00100062 5674 0.0010 (3/2982) 0 * * Os_TE_258867 Chr6 28858015 28858016 + ORSiTERTOOT00033 4884 0.0011 (1/946) 0 * * Os_TE_258856 Chr6 28852858 28852857 - ORSiTETNOOT00156 3648 0.0040 (12/2988) 0 * * Os_TE_258846 Chr6 28848540 28848539 + ORSgTEMT02000056 195 0.0525 (156/2972) 0 * * Os_TE_258838 Chr6 28846905 28846906 - SZ-22_LTR 4403 0.0003 (1/2998) 0 * Os_TE_258837 Os_TE_258837 Chr6 28846901 28846900 + ORSiTERTOOT00226 792 0.0003 (1/2998) 0 * Os_TE_258838 Os_TE_258836 Chr6 28845912 28845913 - ORSiTETNOOT00134 607 0.0003 (1/2994) 0 * Os_TE_258835 Os_TE_258835 Chr6 28845905 28845904 + TWIF 586 0.0003 (1/2993) 0 * Os_TE_258836 Os_TE_258831 Chr6 28843961 28843962 + CASTAWAY-3 314 0.7032 (2104/2992) 0 * * Os_TE_258825 Chr6 28841360 28841361 + ORSgTEMT01601591 242 0.0003 (1/2985) 0 * * Os_TE_258808 Chr6 28833838 28833839 + ORSgTEMT00500906 148 0.0003 (1/2987) 0 * * Os_TE_258805 Chr6 28833199 28833198 - ORSgTEMT00501447 126 0.0003 (1/2990) 0 * Os_TE_258804 Os_TE_258804 Chr6 28833198 28833199 + ORSgTETNOOT01275 140 0.0007 (2/2993) 0 * Os_TE_258805 Os_TE_258792 Chr6 28827314 28827315 - AMYLTP 383 0.0010 (3/2985) 0 * Os_TE_258791 Os_TE_258791 Chr6 28827306 28827305 + AMYLTP 383 0.0010 (3/2993) 0 * Os_TE_258792 Os_TE_258787 Chr6 28826356 28826355 + ORSgTERT00201346 4268 0.0005 (1/2208) 0 * * Os_TE_258766 Chr6 28821480 28821481 - COPIA2-LTR_OS 6433 0.7029 (2103/2992) 0 * Os_TE_258765 Os_TE_258765 Chr6 28821476 28821475 + COPIA2-LTR_OS 6433 0.6973 (2055/2947) 0 * Os_TE_258766 Os_TE_258762 Chr6 28820813 28820814 - MDR1 7383 0.0487 (137/2816) 0 * * Os_TE_258759 Chr6 28817367 28817368 + RETRO2A_LTR 12895 0.0010 (3/2979) 0 * Os_TE_258758 Os_TE_258758 Chr6 28817363 28817362 - RETRO1_LTR 8314 0.0010 (3/2986) 0 * Os_TE_258759 Os_TE_258746 Chr6 28806459 28806458 + ORSgTEMT01701104 154 0.0003 (1/2983) 0 * Os_TE_258745 Os_TE_258745 Chr6 28806458 28806459 - STOWAWAY1_OS 149 0.0003 (1/2990) 0 * Os_TE_258746 Os_TE_258733 Chr6 28799556 28799557 + RIREX_LTR 8828 0.0003 (1/2987) 0 * Os_TE_258732 Os_TE_258732 Chr6 28799552 28799551 - RIREX_LTR 8828 0.0003 (1/2991) 0 * Os_TE_258733 Os_TE_258717 Chr6 28789174 28789173 + TWIFB1 3737 0.0003 (1/2981) 0 * * Os_TE_258706 Chr6 28784063 28784062 - ORSiTERTOOT00301 9654 0.0043 (5/1165) 0 * * Os_TE_258692 Chr6 28778733 28778734 + RIRE3_LTR 12054 0.0654 (192/2935) 0 * Os_TE_258691 Os_TE_258691 Chr6 28778729 28778728 - RIRE3_LTR 12054 0.0708 (208/2937) 0 * Os_TE_258692 Os_TE_258688 Chr6 28777459 28777458 - COPI2_LTR 4733 0.0003 (1/2986) 0 * * Os_TE_258641 Chr6 28759337 28759338 - TRUNCATOR2_LTR 2904 0.2552 (755/2959) 0 * Os_TE_258640 Os_TE_258640 Chr6 28759333 28759332 + ORSiCMCM00100019 2717 0.2116 (607/2868) 0 * Os_TE_258641 Os_TE_258639 Chr6 28759319 28759320 + COPIA2-LTR_OS 6433 0.0302 (90/2982) 0 * Os_TE_258638 Os_TE_258638 Chr6 28759315 28759314 - COPIA2-LTR_OS 6433 0.0331 (91/2750) 0 * Os_TE_258639 Os_TE_258618 Chr6 28745428 28745429 - GYPSY-A_LTR 8951 0.0011 (1/931) 0 * * Os_TE_258611 Chr6 28738910 28738911 + SZ-55_LTR 10318 0.0011 (1/926) 0 * Os_TE_258610 Os_TE_258610 Chr6 28738906 28738905 - SZ-55_LTR 10318 0.0011 (1/925) 0 * Os_TE_258611 Os_TE_258599 Chr6 28733393 28735235 - MERMITED 1572 0.3064 (911/2973) 1 Intact * Os_TE_258583 Chr6 28719851 28708571 - ORSgTERT00201216 11284 0.3034 (903/2976) 1 Intact * Os_TE_258572 Chr6 28706514 28706772 - ORSgTETNOOT00568 259 0.3000 (896/2987) 1 Intact * Os_TE_258557 Chr6 28696881 28696882 - SC-3_LTR 5748 0.0003 (1/2975) 0 * Os_TE_258556 Os_TE_258556 Chr6 28696877 28696876 + ORSiTERTOOT00296 5553 0.0003 (1/2983) 0 * Os_TE_258557 Os_TE_258551 Chr6 28693226 28693073 + STOWAWAY50_OS 174 0.5688 (1703/2994) 1 Intact Os_TE_258549 Os_TE_258549 Chr6 28693073 28693226 - ORSgTEMT01701882 154 0.5686 (1703/2995) 1 Intact Os_TE_258551 Os_TE_258537 Chr6 28675720 28675721 - SC-3_LTR 5748 0.0003 (1/2991) 0 * Os_TE_258536 Os_TE_258536 Chr6 28675716 28675715 + ORSiTERTOOT00296 5553 0.0003 (1/2989) 0 * Os_TE_258537 Os_TE_258535 Chr6 28673915 28673916 + ORSiTERTOOT00296 5553 0.0003 (1/2967) 0 * * Os_TE_258517 Chr6 28656857 28656858 + OSTE33 1012 0.0553 (162/2928) 0 * Os_TE_258516 Os_TE_258516 Chr6 28656849 28656848 + OSTE33 1012 0.0570 (167/2932) 0 * Os_TE_258517 Os_TE_258508 Chr6 28650131 28650130 - STOWAWAY44_OS 240 0.0003 (1/2966) 0 * * Os_TE_258507 Chr6 28650122 28650123 + ORSgTEMT00502171 134 0.0010 (3/2989) 0 * Os_TE_258506 Os_TE_258506 Chr6 28650120 28650119 + ORSgTETNOOT01930 140 0.0010 (3/2984) 0 * Os_TE_258507 Os_TE_258496 Chr6 28649409 28649408 + ORSiTERTOOT00074 4935 0.0010 (3/2995) 0 * * Os_TE_258495 Chr6 28649185 28649186 + ORSgTETNOOT01930 140 0.0010 (3/2992) 0 * * Os_TE_258494 Chr6 28648516 28648517 + NDNA1TNA_OS 334 0.0010 (3/2976) 0 * Os_TE_258493 Os_TE_258493 Chr6 28648514 28648513 - NDNA1TNA_OS 334 0.0010 (3/2972) 0 * Os_TE_258494 Os_TE_258474 Chr6 28640567 28640568 + SC-8_LTR 4951 0.0003 (1/2985) 0 * Os_TE_258473 Os_TE_258473 Chr6 28640563 28640562 - SC-8_LTR 4951 0.0003 (1/2988) 0 * Os_TE_258474 Os_TE_258464 Chr6 28636572 28636573 + ORSgTETNOOT01275 140 0.0010 (3/2975) 0 * Os_TE_258463 Os_TE_258463 Chr6 28636570 28636569 - ORSgTETNOOT01930 140 0.0010 (3/2968) 0 * Os_TE_258464 Os_TE_258411 Chr6 28613913 28600822 + SZ-52_LTR 13107 0.2922 (874/2991) 1 Intact * Os_TE_258404 Chr6 28599979 28599980 - OSTE33 1012 0.0669 (200/2988) 0 * Os_TE_258403 Os_TE_258403 Chr6 28599970 28599969 - OSTE33 1012 0.0672 (201/2989) 0 * Os_TE_258404 Os_TE_258402 Chr6 28599693 28599279 + ORSgTEMT00300122 416 0.2940 (877/2983) 1 Intact Os_TE_258401 Os_TE_258401 Chr6 28599272 28599689 + ORSgTEMT00300069 394 0.2906 (860/2959) 1 Intact Os_TE_258402 Os_TE_258394 Chr6 28596746 28596745 + ORSgTEMT01601591 242 0.0003 (1/2995) 0 * * Os_TE_258375 Chr6 28594358 28594357 + INDITTO 263 0.0124 (31/2491) -1 * * Os_TE_258374 Chr6 28594276 28594277 - INDITTO 263 0.0126 (32/2548) -1 * * Os_TE_258371 Chr6 28591973 28591972 + OLO24 345 0.0003 (1/2996) 0 * * Os_TE_258343 Chr6 28580203 28580204 + ORSgTEMT01601591 242 0.0010 (3/2885) 0 * * Os_TE_258339 Chr6 28579964 28579963 - ORSgTEMT00502257 142 0.0190 (57/2997) 0 * * Os_TE_258337 Chr6 28579635 28579634 + TWIF 586 0.0003 (1/2984) 0 * * Os_TE_258311 Chr6 28574198 28574199 + ORSgTETNOOT01930 140 0.0199 (59/2960) 0 * * Os_TE_258309 Chr6 28574130 28574129 - ORSgTEMT01400022 212 0.0188 (56/2973) 0 * Os_TE_258308 Os_TE_258308 Chr6 28574126 28574127 - ORSgTEMT01400006 213 0.0164 (48/2934) 0 * Os_TE_258309 Os_TE_258295 Chr6 28572170 28572169 - ORSgTEMT00500471 125 0.0185 (55/2970) 0 * * Os_TE_258294 Chr6 28572074 28572075 + ORSgTEMT00800058 376 0.0006 (1/1595) 0 * * Os_TE_258293 Chr6 28572068 28572069 + AMYLTP 383 0.4741 (1381/2913) 0 * Os_TE_258292 Os_TE_258292 Chr6 28572060 28572059 - AMYLTP 383 0.4728 (1381/2921) 0 * Os_TE_258293 Os_TE_258267 Chr6 28570279 28570278 - CRM-LTR_OS 7749 0.0003 (1/2982) 0 * * Os_TE_258246 Chr6 28563461 28563462 - SC-3_LTR 5748 0.0003 (1/2944) 0 * Os_TE_258245 Os_TE_258245 Chr6 28563457 28563456 + ORSiTERTOOT00296 5553 0.0003 (1/2992) 0 * Os_TE_258246 Os_TE_258244 Chr6 28562345 28562344 - SC-8_LTR 4951 0.0003 (1/2971) 0 * * Os_TE_258243 Chr6 28561329 28561330 + ORSiTERTOOT00296 5553 0.0003 (1/2986) 0 * Os_TE_258242 Os_TE_258242 Chr6 28561325 28561324 - SC-3_LTR 5748 0.0003 (1/2990) 0 * Os_TE_258243 Os_TE_258239 Chr6 28559868 28559867 + OSR3_LTR 5201 0.0003 (1/2996) 0 * * Os_TE_258237 Chr6 28559431 28559432 + ORSiTERTOOT00296 5553 0.0007 (2/2997) 0 * Os_TE_258236 Os_TE_258236 Chr6 28559427 28559426 - SC-3_LTR 5748 0.0003 (1/2997) 0 * Os_TE_258237 Os_TE_258230 Chr6 28556955 28556956 - COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_258229 Os_TE_258229 Chr6 28556951 28556950 + COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_258230 Os_TE_258225 Chr6 28555986 28555987 + RIREX_LTR 8828 0.0003 (1/2992) 0 * Os_TE_258224 Os_TE_258224 Chr6 28555982 28555981 - RIREX_LTR 8828 0.0003 (1/2995) 0 * Os_TE_258225 Os_TE_258223 Chr6 28555933 28555934 + SC-3_LTR 5748 0.0010 (3/2996) 0 * Os_TE_258222 Os_TE_258222 Chr6 28555929 28555928 - SC-3_LTR 5748 0.0007 (2/2996) 0 * Os_TE_258223 Os_TE_258195 Chr6 28546622 28546623 - COPIA2-LTR_OS 6433 0.0010 (3/2985) 0 * Os_TE_258194 Os_TE_258194 Chr6 28546618 28546617 + COPIA2-LTR_OS 6433 0.0010 (3/2990) 0 * Os_TE_258195 Os_TE_258116 Chr6 28523602 28519555 - SZ-35LTR 3853 0.3150 (877/2784) 1 Intact Os_TE_258114 Os_TE_258114 Chr6 28519555 28523602 + RETROSAT4_LTR 13504 0.3072 (851/2770) 1 Solo_LTR Os_TE_258116 Os_TE_258103 Chr6 28517230 28517231 - DNAUN1_OS 408 0.0010 (1/964) 0 * * Os_TE_258101 Chr6 28516070 28516069 - ORSiTERT00200154 9386 0.5418 (1496/2761) 0 * * Os_TE_258083 Chr6 28506270 28506271 + ORSgTEMT00900648 236 0.0010 (3/2992) 0 * * Os_TE_258072 Chr6 28503583 28503584 - MPING 430 0.0013 (4/2996) 0 * * Os_TE_258036 Chr6 28491016 28491017 + HARB-1_OS 5166 0.0017 (5/2909) 0 * Os_TE_258035 Os_TE_258035 Chr6 28491014 28491013 - HARB-1_OS 5166 0.0024 (5/2063) 0 * Os_TE_258036 Os_TE_258034 Chr6 28491008 28491009 + SEVERIN-2 1952 0.0021 (6/2905) 0 * * Os_TE_258033 Chr6 28490654 28490655 - SZ-35LTR 3853 0.0003 (1/2866) 0 * Os_TE_258032 Os_TE_258032 Chr6 28490650 28490649 + RETROSAT4_LTR 13504 0.0003 (1/2917) 0 * Os_TE_258033 Os_TE_258030 Chr6 28489639 28489640 - TYPEM 227 0.0003 (1/2957) 0 * Os_TE_258029 Os_TE_258029 Chr6 28489638 28489637 - ORSgTEMT02400179 221 0.0010 (3/2996) 0 * Os_TE_258030 Os_TE_258026 Chr6 28489603 28489457 - ORSgTEMT00501204 149 0.8972 (2688/2996) 1 Intact Os_TE_258025 Os_TE_258025 Chr6 28489454 28489597 + ORSgTEMT00501821 144 0.8982 (2690/2995) 1 Intact Os_TE_258026 Os_TE_258023 Chr6 28487485 28487630 - TNR2A 152 0.7673 (1078/1405) 1 Intact * Os_TE_258022 Chr6 28485697 28485698 + ORSgTEMT00502215 139 0.0020 (6/2992) 0 * * Os_TE_258006 Chr6 28474007 28474008 - OsSN3 183 0.0198 (59/2987) 0 * Os_TE_258005 Os_TE_258005 Chr6 28473994 28473993 + OsSN3 183 0.0184 (55/2985) 0 * Os_TE_258006 Os_TE_258001 Chr6 28467594 28467595 + COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_258000 Os_TE_258000 Chr6 28467590 28467589 - COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_258001 Os_TE_257965 Chr6 28444050 28444051 - ORSgTEMT00100296 161 0.0094 (26/2758) 0 * * Os_TE_257947 Chr6 28436618 28435596 - RETRO2_LTR 12874 0.3114 (913/2932) 1 Solo_LTR * Os_TE_257931 Chr6 28430478 28430479 - MPING 430 0.0003 (1/2948) 0 * Os_TE_257930 Os_TE_257930 Chr6 28430476 28430475 + MPING 430 0.0003 (1/2953) 0 * Os_TE_257931 Os_TE_257911 Chr6 28423621 28417187 + COPIA2-LTR_OS 6433 0.1359 (406/2988) 1 Intact Os_TE_257910 Os_TE_257910 Chr6 28417187 28423621 - COPIA2-LTR_OS 6433 0.1403 (420/2994) 1 Intact Os_TE_257911 Os_TE_257866 Chr6 28396001 28396002 - OSTE33 1012 0.0165 (49/2969) 0 * * Os_TE_257862 Chr6 28390788 28390789 + ORSiTERTOOT00296 5553 0.0010 (3/2988) 0 * Os_TE_257861 Os_TE_257861 Chr6 28390784 28390783 - SC-3_LTR 5748 0.0010 (3/2936) 0 * Os_TE_257862 Os_TE_257856 Chr6 28384000 28384001 + ORSiTERTOOT00402 2660 0.0053 (16/2991) 0 * Os_TE_257855 Os_TE_257855 Chr6 28383996 28383995 - ORSiTERTOOT00402 2660 0.0054 (16/2989) 0 * Os_TE_257856 Os_TE_257851 Chr6 28379668 28379667 + COPI2_LTR 4733 0.0003 (1/2988) 0 * * Os_TE_257850 Chr6 28379322 28379323 + ORSiTERTOOT00333 4719 0.0003 (1/2993) 0 * Os_TE_257849 Os_TE_257849 Chr6 28379319 28379318 - ORSiTERTOOT00333 4719 0.0003 (1/2991) 0 * Os_TE_257850 Os_TE_257843 Chr6 28375645 28375646 + RETROSAT4_LTR 13504 0.0010 (3/2996) 0 * * Os_TE_257839 Chr6 28373758 28373759 + COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_257838 Os_TE_257838 Chr6 28373754 28373753 - COPIA2-LTR_OS 6433 0.0003 (1/2977) 0 * Os_TE_257839 Os_TE_257837 Chr6 28372976 28372977 + ORSiTERTOOT00361 5627 0.4755 (1424/2995) 0 * Os_TE_257836 Os_TE_257836 Chr6 28372972 28372971 - ORSiTERTOOT00361 5627 0.4743 (1419/2992) 0 * Os_TE_257837 Os_TE_257819 Chr6 28364778 28364777 - STOWAWAY51_OS 246 0.0007 (2/2867) 0 * Os_TE_257818 Os_TE_257818 Chr6 28364772 28364773 + STOWAWAY51_OS 246 0.0007 (2/2880) 0 * Os_TE_257819 Os_TE_257800 Chr6 28358456 28358457 + COPI1_LTR 4721 0.0004 (1/2843) 0 * Os_TE_257799 Os_TE_257799 Chr6 28358452 28358451 - SZ-25LTR 330 0.0014 (4/2882) 0 * Os_TE_257800 Os_TE_257771 Chr6 28341040 28341041 - RETRO2_LTR 12874 0.0224 (67/2991) 0 * Os_TE_257770 Os_TE_257770 Chr6 28341036 28341035 + RETRO2_LTR 12874 0.0228 (68/2987) 0 * Os_TE_257771 Os_TE_257762 Chr6 28338630 28338631 - YOUREN 286 0.0007 (2/2990) 0 * * Os_TE_257756 Chr6 28337312 28337311 - MDR2 6967 0.0184 (55/2989) 0 * * Os_TE_257722 Chr6 28325285 28325286 + RETROSAT4_LTR 13504 0.0178 (53/2979) 0 * Os_TE_257721 Os_TE_257721 Chr6 28325281 28325280 - RETROSAT4_LTR 13504 0.0185 (55/2981) 0 * Os_TE_257722 Os_TE_257692 Chr6 28315351 28315352 - INDITTO 263 0.0020 (6/2969) 0 * Os_TE_257691 Os_TE_257691 Chr6 28315349 28315348 + INDITTO 263 0.0050 (6/1197) 0 * Os_TE_257692 Os_TE_257689 Chr6 28314338 28314339 - RETROSAT4_LTR 13504 0.6625 (1957/2954) 0 * Os_TE_257688 Os_TE_257688 Chr6 28314334 28314333 + RETROSAT4_LTR 13504 0.6620 (1968/2973) 0 * Os_TE_257689 Os_TE_257675 Chr6 28305309 28305308 - RIRE3A_LTR 10580 0.0003 (1/2991) 0 * * Os_TE_257652 Chr6 28296459 28296460 - RIRE5-LTR_OS 6427 0.0242 (70/2896) 0 * Os_TE_257651 Os_TE_257651 Chr6 28296452 28296451 + RIRE5-LTR_OS 6427 0.0070 (20/2867) 0 * Os_TE_257652 Os_TE_257637 Chr6 28289786 28289787 - OSTE17 734 0.0229 (68/2972) 0 * * Os_TE_257626 Chr6 28276330 28276331 - RPO_OS 1983 0.0013 (4/2991) 0 * * Os_TE_257615 Chr6 28272363 28272364 - ORSiTERTOOT00332 5395 0.0003 (1/2908) 0 * * Os_TE_257607 Chr6 28262589 28262590 - TRUNCATOR2_LTR 2904 0.0007 (2/2997) 0 * * Os_TE_257550 Chr6 28232665 28232666 + AMYLTP 383 0.6253 (1857/2970) 0 * Os_TE_257549 Os_TE_257549 Chr6 28232657 28232656 - AMYLTP 383 0.6264 (1868/2982) 0 * Os_TE_257550 Os_TE_257524 Chr6 28220406 28220407 - SC-3_LTR 5748 0.0010 (3/2963) 0 * Os_TE_257523 Os_TE_257523 Chr6 28220402 28220401 + ORSiTERTOOT00296 5553 0.0010 (3/2967) 0 * Os_TE_257524 Os_TE_257510 Chr6 28212508 28212509 - SC-3_LTR 5748 0.0003 (1/2967) 0 * Os_TE_257509 Os_TE_257509 Chr6 28212504 28212503 + ORSiTERTOOT00296 5553 0.0003 (1/2971) 0 * Os_TE_257510 Os_TE_257507 Chr6 28211096 28211097 - SC-8_LTR 4951 0.0003 (1/2933) 0 * Os_TE_257506 Os_TE_257506 Chr6 28211092 28211091 + SC-8_LTR 4951 0.0003 (1/2945) 0 * Os_TE_257507 Os_TE_257498 Chr6 28206834 28206833 + ORSgTETNOOT01219 231 0.6788 (2006/2955) 0 * * Os_TE_257479 Chr6 28200013 28200012 + ORSgTEMT00300122 416 0.0003 (1/2989) 0 * * Os_TE_257475 Chr6 28199085 28199086 + MERMITED 1572 0.5544 (1661/2996) 0 * Os_TE_257474 Os_TE_257474 Chr6 28199083 28199082 + MERMITED 1572 0.5489 (1634/2977) 0 * Os_TE_257475 Os_TE_257468 Chr6 28196396 28196397 + COPIA2-LTR_OS 6433 0.0024 (7/2934) 0 * Os_TE_257467 Os_TE_257467 Chr6 28196392 28196391 - COPIA2-LTR_OS 6433 0.0027 (8/2929) 0 * Os_TE_257468 Os_TE_257447 Chr6 28174780 28174434 - NDNA2TNA_OS 346 0.3761 (1122/2983) 1 Intact * Os_TE_257433 Chr6 28170518 28170517 + STOWAWAY51_OS 246 0.0003 (1/2994) 0 * * Os_TE_257427 Chr6 28170003 28170004 + ORSgTEMT00600272 361 0.0027 (8/2990) 0 * * Os_TE_257413 Chr6 28168480 28168479 - ORSgTEMT01602213 232 0.0003 (1/2877) 0 * * Os_TE_257407 Chr6 28167402 28167403 + ORSgTETNOOT02339 261 0.6295 (1813/2880) 0 * Os_TE_257406 Os_TE_257406 Chr6 28167401 28167400 + ORSgTETNOOT00221 261 0.6502 (1939/2982) 0 * Os_TE_257407 Os_TE_257393 Chr6 28166084 28166085 + ORSiTERTOOT00226 792 0.0003 (1/2923) 0 * Os_TE_257392 Os_TE_257392 Chr6 28166080 28166079 - SZ-22_LTR 4403 0.0003 (1/2911) 0 * Os_TE_257393 Os_TE_257389 Chr6 28165293 28165294 + TELIA 141 0.0003 (1/2897) 0 * Os_TE_257388 Os_TE_257388 Chr6 28165285 28165284 - TELIA 141 0.0003 (1/2934) 0 * Os_TE_257389 Os_TE_257383 Chr6 28162615 28162616 + ORSiTERTOOT00296 5553 0.0003 (1/2989) 0 * Os_TE_257382 Os_TE_257382 Chr6 28162611 28162610 - SC-3_LTR 5748 0.0003 (1/2985) 0 * Os_TE_257383 Os_TE_257377 Chr6 28158603 28158602 - SC-8_LTR 4951 0.0003 (1/2985) 0 * * Os_TE_257366 Chr6 28151198 28151199 - TWIFB1 3737 0.0254 (51/2005) -1 * Os_TE_257365 Os_TE_257365 Chr6 28151191 28151190 + TWIFB1 3737 0.0034 (7/2070) -1 * Os_TE_257366 Os_TE_257335 Chr6 28139005 28139006 + ORSgTEMT05000092 279 0.0017 (5/2987) 0 * Os_TE_257334 Os_TE_257334 Chr6 28139003 28139002 - SUSU 279 0.0017 (5/2987) 0 * Os_TE_257335 Os_TE_257322 Chr6 28136610 28136611 + ORSiTERTOOT00296 5553 0.0010 (3/2981) 0 * Os_TE_257321 Os_TE_257321 Chr6 28136606 28136605 - SC-3_LTR 5748 0.0010 (3/2975) 0 * Os_TE_257322 Os_TE_257309 Chr6 28133416 28133417 - COPIA2-LTR_OS 6433 0.0003 (1/2945) 0 * * Os_TE_257226 Chr6 28118485 28118486 - COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_257225 Os_TE_257225 Chr6 28118481 28118480 + COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_257226 Os_TE_257215 Chr6 28115108 28115107 - CENTRE 280 0.0021 (6/2926) 0 * * Os_TE_257213 Chr6 28113748 28113747 + COPIO_LTR 11693 0.0007 (2/2956) 0 * * Os_TE_257205 Chr6 28107586 28107587 - MUDRN1_OS 764 0.0148 (44/2975) 0 * * Os_TE_257154 Chr6 28093759 28093758 + ORSgTEMT01601591 242 0.0003 (1/2983) 0 * Os_TE_257153 Os_TE_257153 Chr6 28093753 28093754 + STOWAWAY51_OS 246 0.0003 (1/2979) 0 * Os_TE_257154 Os_TE_257151 Chr6 28088681 28088333 + NDNA2TNA_OS 346 0.3410 (976/2862) 1 Intact Os_TE_257148 Os_TE_257148 Chr6 28088333 28088681 - NDNA2TNA_OS 346 0.3128 (877/2804) 1 Intact Os_TE_257151 Os_TE_257143 Chr6 28087677 28087678 - RIREX_LTR 8828 0.0003 (1/2966) 0 * Os_TE_257142 Os_TE_257142 Chr6 28087673 28087672 + RIREX_LTR 8828 0.0003 (1/2951) 0 * Os_TE_257143 Os_TE_257115 Chr6 28083381 28083380 + NDNA1TNA_OS 334 0.5585 (1656/2965) 0 * * Os_TE_257072 Chr6 28069933 28069934 - ENSPM6_OS 9815 0.0004 (1/2381) 0 * Os_TE_257071 Os_TE_257071 Chr6 28069931 28069930 + ENSPM5_OS 9581 0.0003 (1/2985) 0 * Os_TE_257072 Os_TE_257053 Chr6 28063978 28063979 + ORSiTERTOOT00296 5553 0.0007 (2/2997) 0 * Os_TE_257052 Os_TE_257052 Chr6 28063974 28063973 - SC-3_LTR 5748 0.0007 (2/2996) 0 * Os_TE_257053 Os_TE_257005 Chr6 28044359 28044360 - AMYLTP 383 0.1966 (549/2792) 0 * Os_TE_257004 Os_TE_257004 Chr6 28044351 28044350 + AMYLTP 383 0.1984 (554/2792) 0 * Os_TE_257005 Os_TE_256981 Chr6 28032762 28032761 + ORSgTETNOOT01219 231 0.4330 (1295/2991) 0 * * Os_TE_256975 Chr6 28027760 28027761 - COPIA2-LTR_OS 6433 0.0023 (7/2993) 0 * * Os_TE_256955 Chr6 28020910 28020911 + ORSgTEMT01601591 242 0.0003 (1/2991) 0 * * Os_TE_256947 Chr6 28016439 28016440 - COPIA2-LTR_OS 6433 0.0021 (6/2913) 0 * Os_TE_256946 Os_TE_256946 Chr6 28016435 28016434 + COPIA2-LTR_OS 6433 0.0003 (1/2944) 0 * Os_TE_256947 Os_TE_256944 Chr6 28015943 28015611 + NDNA1TNA_OS 334 0.4605 (1377/2990) 1 Intact Os_TE_256941 Os_TE_256941 Chr6 28015610 28015944 - ORSgTEMT00100582 334 0.4594 (1374/2991) 1 Intact Os_TE_256944 Os_TE_256931 Chr6 28007125 28007124 - MERMITED 1572 0.0016 (4/2542) 0 * * Os_TE_256926 Chr6 28005657 28005658 - ORSgTEMT01701182 145 0.0004 (1/2483) 0 * * Os_TE_256924 Chr6 28005100 28004872 - ORSgTEMT01600578 239 0.8072 (2190/2713) 1 Intact Os_TE_256923 Os_TE_256923 Chr6 28004872 28005100 + ORSgTEMT01602181 239 0.8032 (2196/2734) 1 Intact Os_TE_256924 Os_TE_256911 Chr6 28000396 28000089 + ORSgTEMT00100291 345 0.7391 (2215/2997) 1 Intact Os_TE_256909 Os_TE_256909 Chr6 28000049 28000396 - ORSgTEMT00100291 345 0.7391 (2207/2986) 1 Intact Os_TE_256911 Os_TE_256853 Chr6 27974886 27974887 + SZ-55_LTR 10318 0.0004 (1/2230) 0 * Os_TE_256852 Os_TE_256852 Chr6 27974882 27974881 - SZ-55_LTR 10318 0.0004 (1/2232) 0 * Os_TE_256853 Os_TE_256842 Chr6 27972768 27972442 + ORSgTEMT00100291 345 0.8400 (1323/1575) 1 Intact * Os_TE_256839 Chr6 27972458 27972459 + ORSgTEMT00501165 134 0.0033 (5/1513) -1 * * Os_TE_256833 Chr6 27970618 27970619 + ORSgTETNOOT00908 242 0.3647 (850/2331) 0 * * Os_TE_256830 Chr6 27968677 27968678 + RIREX_LTR 8828 0.0004 (1/2740) 0 * Os_TE_256829 Os_TE_256829 Chr6 27968673 27968672 - RIREX_LTR 8828 0.0003 (1/2889) 0 * Os_TE_256830 Os_TE_256828 Chr6 27968660 27968661 + WUWU 113 0.1839 (531/2888) 0 * * Os_TE_256817 Chr6 27967557 27967558 + QINNIU 528 0.1318 (376/2853) 0 * Os_TE_256816 Os_TE_256816 Chr6 27967550 27967549 - HATOS1 3488 0.1329 (378/2845) 0 * Os_TE_256817 Os_TE_256810 Chr6 27965326 27965325 + ORSgTEMT00100272 356 0.0004 (1/2746) 0 * * Os_TE_256804 Chr6 27964594 27964930 + NDNA1TNA_OS 334 0.4996 (1395/2792) 1 Intact * Os_TE_256800 Chr6 27960986 27960985 - COPI2_LTR 4733 0.0003 (1/2995) 0 * * Os_TE_256798 Chr6 27959989 27959990 - ORSiTERTOOT00332 5395 0.0003 (1/2993) 0 * Os_TE_256797 Os_TE_256797 Chr6 27959985 27959984 + ORSiTERTOOT00332 5395 0.0003 (1/2889) 0 * Os_TE_256798 Os_TE_256780 Chr6 27952880 27952879 - SZ-48LTR 3632 0.0258 (61/2364) 0 * * Os_TE_256762 Chr6 27947132 27946599 - CLOUD-3 550 0.8639 (2413/2793) 1 Intact * Os_TE_256760 Chr6 27946506 27946507 - COPIA2-LTR_OS 6433 0.0010 (1/1035) -1 * * Os_TE_256744 Chr6 27942120 27942119 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * * Os_TE_256743 Chr6 27942117 27942118 + COPI1_LTR 4721 0.0017 (5/2995) 0 * Os_TE_256742 Os_TE_256742 Chr6 27942113 27942112 - SZ-25LTR 330 0.0013 (4/2996) 0 * Os_TE_256743 Os_TE_256734 Chr6 27939228 27939229 + RETRO2A_LTR 12895 0.0034 (10/2937) 0 * Os_TE_256733 Os_TE_256733 Chr6 27939224 27939223 - RETRO1_LTR 8314 0.0034 (10/2942) 0 * Os_TE_256734 Os_TE_256731 Chr6 27938227 27938228 - SINE9_OS 293 0.1487 (441/2966) 0 * * Os_TE_256730 Chr6 27937975 27937976 - HARB-1_OS 5166 0.0182 (53/2920) 0 * Os_TE_256729 Os_TE_256729 Chr6 27937973 27937972 + HARB-1_OS 5166 0.0167 (49/2942) 0 * Os_TE_256730 Os_TE_256721 Chr6 27935937 27935936 + RETRO2A_LTR 12895 0.0612 (182/2975) 0 * * Os_TE_256716 Chr6 27933158 27933157 + STOWAWAY51_OS 246 0.1260 (369/2928) 0 * Os_TE_256715 Os_TE_256715 Chr6 27933156 27933157 - STOWAWAY51_OS 246 0.1253 (367/2929) 0 * Os_TE_256716 Os_TE_256711 Chr6 27932783 27932535 + ORSgTEMT00901844 250 0.8732 (2561/2933) 1 Intact Os_TE_256707 Os_TE_256707 Chr6 27932535 27932783 - ORSgTEMT00900099 250 0.8772 (2621/2988) 1 Intact Os_TE_256711 Os_TE_256674 Chr6 27920162 27920163 + RETRO2_LTR 12874 0.0013 (4/2980) 0 * Os_TE_256673 Os_TE_256673 Chr6 27920158 27920157 - RETRO2_LTR 12874 0.0013 (4/2976) 0 * Os_TE_256674 Os_TE_256671 Chr6 27919386 27919387 - ORSgTETN00200001 10994 0.0676 (199/2944) 0 * Os_TE_256670 Os_TE_256670 Chr6 27919384 27919383 + SPMLIKE 10989 0.0751 (222/2958) 0 * Os_TE_256671 Os_TE_256645 Chr6 27915079 27915078 - INDITTO 263 0.0027 (8/2986) 0 * * Os_TE_256631 Chr6 27911562 27911563 + TELIA 141 0.0003 (1/2869) 0 * Os_TE_256630 Os_TE_256630 Chr6 27911554 27911553 - TELIA 141 0.0003 (1/2871) 0 * Os_TE_256631 Os_TE_256581 Chr6 27900679 27900680 - NDNA1TNA_OS 334 0.0186 (52/2796) 0 * Os_TE_256580 Os_TE_256580 Chr6 27900678 27900677 + NDNA1TNA_OS 334 0.0213 (59/2775) 0 * Os_TE_256581 Os_TE_256564 Chr6 27896186 27896187 + COPI2_LTR 4733 0.0003 (1/2976) 0 * Os_TE_256563 Os_TE_256563 Chr6 27896182 27896181 - COPI2_LTR 4733 0.0003 (1/2982) 0 * Os_TE_256564 Os_TE_256528 Chr6 27890006 27890005 + SPMLIKE 10989 0.0017 (5/2926) 0 * * Os_TE_256518 Chr6 27886478 27886479 + OLO24 345 0.0468 (140/2990) 0 * Os_TE_256517 Os_TE_256517 Chr6 27886476 27886475 - OLO24 345 0.0466 (139/2985) 0 * Os_TE_256518 Os_TE_256516 Chr6 27886244 27886245 - OLO24 345 0.0003 (1/2990) 0 * Os_TE_256515 Os_TE_256515 Chr6 27886242 27886241 + OLO24 345 0.0003 (1/2991) 0 * Os_TE_256516 Os_TE_256497 Chr6 27881051 27881052 + STOWAWAY9_OS 235 0.0017 (5/2986) 0 * Os_TE_256496 Os_TE_256496 Chr6 27881050 27881049 + STOWAWAY9_OS 235 0.0010 (3/2986) 0 * Os_TE_256497 Os_TE_256479 Chr6 27872046 27872047 + SC-8_LTR 4951 0.0003 (1/2972) 0 * Os_TE_256478 Os_TE_256478 Chr6 27872042 27872041 - SC-8_LTR 4951 0.0003 (1/2968) 0 * Os_TE_256479 Os_TE_256460 Chr6 27863076 27863077 - INDITTO 263 0.0760 (224/2949) 0 * * Os_TE_256442 Chr6 27856411 27856412 + COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * Os_TE_256441 Os_TE_256441 Chr6 27856407 27856406 - COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * Os_TE_256442 Os_TE_256439 Chr6 27855026 27855027 - SZ-67LTR 1540 0.0017 (5/2966) 0 * Os_TE_256438 Os_TE_256438 Chr6 27855022 27855021 + SZ-67LTR 1540 0.0017 (5/2934) 0 * Os_TE_256439 Os_TE_256406 Chr6 27843311 27843312 + SZ-55_LTR 10318 0.0037 (11/2992) 0 * Os_TE_256405 Os_TE_256405 Chr6 27843307 27843306 - SZ-55_LTR 10318 0.0037 (11/2994) 0 * Os_TE_256406 Os_TE_256398 Chr6 27840593 27840594 + HARB-1_OS 5166 0.0003 (1/2988) 0 * Os_TE_256397 Os_TE_256397 Chr6 27840591 27840590 - HARB-1_OS 5166 0.0003 (1/2989) 0 * Os_TE_256398 Os_TE_256345 Chr6 27831357 27831358 + MPING 430 0.0004 (1/2810) 0 * Os_TE_256344 Os_TE_256344 Chr6 27831355 27831354 - MPING 430 0.0004 (1/2787) 0 * Os_TE_256345 Os_TE_256343 Chr6 27829737 27829736 - ORSgTEMT02400246 177 0.0003 (1/2992) 0 * Os_TE_256342 Os_TE_256342 Chr6 27829736 27829737 - TYPEM 227 0.0003 (1/2991) 0 * Os_TE_256343 Os_TE_256320 Chr6 27818422 27818423 + MPING 430 0.0003 (1/2962) 0 * Os_TE_256319 Os_TE_256319 Chr6 27818420 27818419 - MPING 430 0.0003 (1/2963) 0 * Os_TE_256320 Os_TE_256311 Chr6 27817210 27817211 + RIREX_LTR 8828 0.0010 (3/2967) 0 * Os_TE_256310 Os_TE_256310 Chr6 27817206 27817205 - RIREX_LTR 8828 0.0010 (3/2961) 0 * Os_TE_256311 Os_TE_256292 Chr6 27810512 27810513 - MuDR2_OS 6770 0.0111 (33/2971) 0 * * Os_TE_256286 Chr6 27809695 27809696 + RETROSAT2LTRA 3112 0.0017 (5/2977) 0 * * Os_TE_256278 Chr6 27808731 27808732 - OSTE24 683 0.0017 (5/2996) 0 * Os_TE_256277 Os_TE_256277 Chr6 27808721 27808720 - OSTE24 683 0.0017 (5/2996) 0 * Os_TE_256278 Os_TE_256259 Chr6 27801118 27801117 - ORSgTEMT01601696 238 0.0578 (173/2993) 0 * Os_TE_256258 Os_TE_256258 Chr6 27801115 27801116 - ORSgTEMT01601432 239 0.0577 (173/2998) 0 * Os_TE_256259 Os_TE_256252 Chr6 27798887 27798888 - ENSPM3_OS 10837 0.0005 (1/1906) 0 * * Os_TE_256249 Chr6 27796067 27796066 + STOWAWAY50_OS 174 0.0003 (1/2957) 0 * * Os_TE_256221 Chr6 27776332 27770706 - ORSiTERTOOT00361 5627 0.8658 (2588/2989) 1 Intact Os_TE_256211 Os_TE_256211 Chr6 27770706 27776332 + ORSiTERTOOT00361 5627 0.8680 (2597/2992) 1 Intact Os_TE_256221 Os_TE_256183 Chr6 27766070 27766069 - TRUNCATOR2_LTR 2904 0.0010 (3/2979) 0 * * Os_TE_256176 Chr6 27764929 27764930 - RIREX_LTR 8828 0.0013 (3/2372) 0 * Os_TE_256175 Os_TE_256175 Chr6 27764925 27764924 + RIREX_LTR 8828 0.0017 (4/2361) 0 * Os_TE_256176 Os_TE_256170 Chr6 27763321 27763320 - ORSgTEMT00901567 235 0.0014 (4/2794) 0 * * Os_TE_256167 Chr6 27762259 27762260 - RIRE5-LTR_OS 6427 0.0158 (47/2980) 0 * Os_TE_256166 Os_TE_256166 Chr6 27762253 27762252 + RIRE5-LTR_OS 6427 0.0154 (46/2981) 0 * Os_TE_256167 Os_TE_256164 Chr6 27760234 27760235 - MERMITEJ 1498 0.0083 (23/2775) 0 * Os_TE_256163 Os_TE_256163 Chr6 27760226 27760225 - MERMITEJ 1498 0.0061 (17/2765) 0 * Os_TE_256164 Os_TE_256152 Chr6 27756054 27756053 + ORSiTERT00200069 6058 0.0003 (1/2991) 0 * * Os_TE_256149 Chr6 27748903 27748904 - TELIA 141 0.0003 (1/2947) 0 * * Os_TE_256143 Chr6 27748551 27748550 - RETRO2_LTR 12874 0.0018 (5/2774) 0 * * Os_TE_256142 Chr6 27748398 27748399 - OSTE9 421 0.0034 (10/2905) 0 * Os_TE_256141 Os_TE_256141 Chr6 27748394 27748393 + OSTE9 421 0.0031 (9/2916) 0 * Os_TE_256142 Os_TE_256139 Chr6 27746837 27746838 + COPIA2-LTR_OS 6433 0.0154 (46/2991) 0 * Os_TE_256138 Os_TE_256138 Chr6 27746833 27746832 - COPIA2-LTR_OS 6433 0.0157 (47/2989) 0 * Os_TE_256139 Os_TE_256133 Chr6 27741998 27741997 - ORSgTEMT00500675 140 0.0013 (4/2971) 0 * * Os_TE_256122 Chr6 27735357 27735358 - SC-8_LTR 4951 0.0003 (1/2996) 0 * Os_TE_256121 Os_TE_256121 Chr6 27735353 27735352 + SC-8_LTR 4951 0.0003 (1/2993) 0 * Os_TE_256122 Os_TE_256113 Chr6 27728550 27728551 + ORSiCMCM00100019 2717 0.0007 (2/2980) 0 * Os_TE_256112 Os_TE_256112 Chr6 27728546 27728545 - TRUNCATOR2_LTR 2904 0.0007 (2/2997) 0 * Os_TE_256113 Os_TE_256103 Chr6 27722865 27719292 - ORSiTETNOOT00134 607 0.8605 (2369/2753) 1 Intact Os_TE_256102 Os_TE_256102 Chr6 27719292 27722862 + TWIFBIG 3567 0.7664 (1342/1751) 1 Intact Os_TE_256103 Os_TE_256091 Chr6 27712058 27712059 + SC-8_LTR 4951 0.0003 (1/2981) 0 * Os_TE_256090 Os_TE_256090 Chr6 27712054 27712053 - SC-8_LTR 4951 0.0003 (1/2985) 0 * Os_TE_256091 Os_TE_256089 Chr6 27709444 27709445 - SC-3_LTR 5748 0.0003 (1/2996) 0 * Os_TE_256088 Os_TE_256088 Chr6 27709440 27709439 + ORSiTERTOOT00296 5553 0.0003 (1/2995) 0 * Os_TE_256089 Os_TE_256087 Chr6 27708386 27708385 - ORSgTEMT00901723 248 0.1387 (415/2992) 0 * * Os_TE_256022 Chr6 27685572 27685573 + NDNA2TNA_OS 346 0.0164 (49/2993) 0 * * Os_TE_256019 Chr6 27683283 27683284 + MuDR3_OS 8604 0.0175 (52/2974) 0 * Os_TE_256018 Os_TE_256018 Chr6 27683275 27683274 - MuDR3_OS 8604 0.0165 (49/2973) 0 * Os_TE_256019 Os_TE_256010 Chr6 27675965 27675964 - ORSgTEMT01602413 239 0.0621 (186/2993) 0 * Os_TE_256009 Os_TE_256009 Chr6 27675962 27675963 - ORSgTEMT01602413 239 0.0245 (71/2895) 0 * Os_TE_256010 Os_TE_256008 Chr6 27675868 27675867 - ORSgTEMT01400014 209 0.0557 (166/2981) 0 * Os_TE_256007 Os_TE_256007 Chr6 27675864 27675865 - ORSgTEMT01400022 212 0.0502 (149/2968) 0 * Os_TE_256008 Os_TE_256005 Chr6 27675773 27675772 + TREP215 239 0.0519 (154/2969) 0 * * Os_TE_255961 Chr6 27660131 27660132 + SC-8_LTR 4951 0.0007 (2/2996) 0 * Os_TE_255960 Os_TE_255960 Chr6 27660127 27660126 - SC-8_LTR 4951 0.0007 (2/2996) 0 * Os_TE_255961 Os_TE_255959 Chr6 27659533 27659534 + MERMITED 1572 0.0003 (1/2998) 0 * * Os_TE_255957 Chr6 27658864 27658865 + BUHUI 375 0.0017 (5/2993) 0 * * Os_TE_255951 Chr6 27652204 27652205 + ORSgTEMT01701743 163 0.0138 (41/2974) 0 * * Os_TE_255946 Chr6 27649260 27649259 + DS-RICE2N 613 0.0147 (42/2849) 0 * * Os_TE_255935 Chr6 27643468 27643467 - TNR2A 152 0.0461 (138/2993) 0 * * Os_TE_255919 Chr6 27638796 27638797 - COPI2_LTR 4733 0.0040 (12/2990) 0 * * Os_TE_255917 Chr6 27638674 27638673 - TREP215 239 0.0017 (5/2997) 0 * * Os_TE_255914 Chr6 27637122 27637121 + ORSgTEMT00500852 140 0.0013 (4/2997) 0 * * Os_TE_255885 Chr6 27633396 27633397 + OLO24 345 0.0137 (41/2987) 0 * Os_TE_255884 Os_TE_255884 Chr6 27633394 27633393 - OLO24 345 0.0124 (37/2983) 0 * Os_TE_255885 Os_TE_255883 Chr6 27628398 27628399 - SC-3_LTR 5748 0.0144 (43/2987) 0 * * Os_TE_255880 Chr6 27627381 27627380 - ORSgTEMT00501356 145 0.0141 (42/2989) 0 * * Os_TE_255871 Chr6 27619903 27619904 - COPIA2-LTR_OS 6433 0.0010 (3/2994) 0 * Os_TE_255870 Os_TE_255870 Chr6 27619899 27619898 + COPIA2-LTR_OS 6433 0.0007 (2/2993) 0 * Os_TE_255871 Os_TE_255861 Chr6 27614003 27614002 - INDITTO 263 0.0017 (5/2986) 0 * * Os_TE_255859 Chr6 27609697 27609698 - INDITTO 263 0.0013 (4/2986) 0 * Os_TE_255858 Os_TE_255858 Chr6 27609695 27609694 + INDITTO 263 0.0013 (4/2988) 0 * Os_TE_255859 Os_TE_255849 Chr6 27607088 27607089 + NDNA1TNA_OS 334 0.3057 (887/2902) 0 * Os_TE_255848 Os_TE_255848 Chr6 27607086 27607085 - NDNA1TNA_OS 334 0.3004 (858/2856) 0 * Os_TE_255849 Os_TE_255835 Chr6 27604481 27604482 + SC-10_LTR 4920 0.0140 (42/2994) 0 * Os_TE_255834 Os_TE_255834 Chr6 27604477 27604476 - SC-10_LTR 4920 0.0140 (42/2994) 0 * Os_TE_255835 Os_TE_255831 Chr6 27600934 27600933 - TRUNCATOR 2918 0.0003 (1/2995) 0 * Os_TE_255830 Os_TE_255830 Chr6 27600933 27600934 + TRUNCATOR 2918 0.0003 (1/2993) 0 * Os_TE_255831 Os_TE_255819 Chr6 27597385 27597386 - ORSiTERT00100062 5674 0.3052 (913/2991) 0 * Os_TE_255818 Os_TE_255818 Chr6 27597381 27597380 + OSTONOR1_LTR 6440 0.3072 (919/2992) 0 * Os_TE_255819 Os_TE_255816 Chr6 27596620 27596621 + MPING 430 0.0010 (3/2937) 0 * Os_TE_255815 Os_TE_255815 Chr6 27596618 27596617 - MPING 430 0.0010 (3/2931) 0 * Os_TE_255816 Os_TE_255813 Chr6 27596442 27596441 + ORSgTETNOOT01834 251 0.0003 (1/2935) 0 * * Os_TE_255769 Chr6 27583956 27583955 - RETROSAT2LTRA 3112 0.0003 (1/2991) 0 * * Os_TE_255768 Chr6 27582727 27582726 - RETROSAT2LTR 12796 0.0017 (5/2946) 0 * * Os_TE_255767 Chr6 27582612 27582613 + COPI2_LTR 4733 0.0011 (3/2839) 0 * Os_TE_255766 Os_TE_255766 Chr6 27582608 27582607 - COPI2_LTR 4733 0.0007 (2/2843) 0 * Os_TE_255767 Os_TE_255743 Chr6 27578035 27578034 - ORSgTETN00200001 10994 0.3093 (922/2981) 0 * * Os_TE_255730 Chr6 27576850 27576849 - COPIA2-LTR_OS 6433 0.0004 (1/2823) 0 * * Os_TE_255723 Chr6 27575166 27575167 - ORSgTEMT01400015 213 0.0017 (5/2984) 0 * * Os_TE_255707 Chr6 27569442 27569098 + OLO24 345 0.6136 (1839/2997) 1 Intact Os_TE_255705 Os_TE_255705 Chr6 27569098 27569442 - OLO24 345 0.6068 (1815/2991) 1 Intact Os_TE_255707 Os_TE_255663 Chr6 27561321 27561322 + MPING 430 0.0004 (1/2793) 0 * Os_TE_255662 Os_TE_255662 Chr6 27561319 27561318 - MPING 430 0.0004 (1/2797) 0 * Os_TE_255663 Os_TE_255649 Chr6 27559150 27559151 - MPING 430 0.0010 (3/2989) 0 * Os_TE_255648 Os_TE_255648 Chr6 27559148 27559147 + MPING 430 0.0010 (3/2983) 0 * Os_TE_255649 Os_TE_255647 Chr6 27558965 27558966 - MPING 430 0.0003 (1/2992) 0 * Os_TE_255646 Os_TE_255646 Chr6 27558963 27558962 + MPING 430 0.0003 (1/2993) 0 * Os_TE_255647 Os_TE_255625 Chr6 27553938 27553937 + ORSgTEMT01600650 234 0.0003 (1/2963) 0 * * Os_TE_255614 Chr6 27551133 27551132 + ORSgTEMT01602181 239 0.0010 (3/2986) 0 * Os_TE_255613 Os_TE_255613 Chr6 27551130 27551131 - ORSgTEMT01601432 239 0.0010 (3/2984) 0 * Os_TE_255614 Os_TE_255603 Chr6 27548266 27548265 + STOWAWAY51_OS 246 0.0003 (1/2985) 0 * * Os_TE_255596 Chr6 27545859 27534517 - RIRE2_LTR 11306 0.3510 (1051/2994) 1 Intact * Os_TE_255573 Chr6 27532500 27532499 - ORSgTEMT02000081 196 0.0334 (100/2993) 0 * * Os_TE_255566 Chr6 27529653 27529654 + AMYLTP 383 0.0128 (38/2976) 0 * Os_TE_255565 Os_TE_255565 Chr6 27529645 27529644 - AMYLTP 383 0.0118 (35/2978) 0 * Os_TE_255566 Os_TE_255564 Chr6 27529167 27529166 - SZ-40LTR 2465 0.0003 (1/2993) 0 * * Os_TE_255558 Chr6 27527507 27527508 - MPING 430 0.0017 (5/2990) 0 * Os_TE_255557 Os_TE_255557 Chr6 27527505 27527504 + MPING 430 0.0020 (6/2994) 0 * Os_TE_255558 Os_TE_255542 Chr6 27523486 27523487 + RIREX_LTR 8828 0.0030 (8/2631) 0 * * Os_TE_255521 Chr6 27514446 27514445 - RIREX_LTR 8828 0.0004 (1/2650) 0 * * Os_TE_255505 Chr6 27505102 27504897 - ORSgTEMT01400038 210 0.7295 (1033/1416) 1 Intact * Os_TE_255499 Chr6 27503219 27503220 + STOWAWAY18_OS 216 0.1237 (368/2975) 0 * * Os_TE_255488 Chr6 27501962 27501963 + ORSiTERTOOT00226 792 0.0153 (44/2879) 0 * Os_TE_255487 Os_TE_255487 Chr6 27501958 27501957 - SZ-22_LTR 4403 0.0136 (39/2867) 0 * Os_TE_255488 Os_TE_255474 Chr6 27494907 27494563 + ORSgTEMT02900114 314 0.8785 (2603/2963) 1 Intact * Os_TE_255470 Chr6 27494382 27494381 - MERMITEA 1710 0.1275 (381/2989) 0 * * Os_TE_255468 Chr6 27494181 27494182 + STOWAWAY17_OS 259 0.0789 (225/2853) 0 * * Os_TE_255465 Chr6 27491124 27491125 - ORSgTETNOOT00591 258 0.1281 (379/2959) 0 * Os_TE_255464 Os_TE_255464 Chr6 27491121 27491120 + ORSgTETNOOT01686 252 0.1221 (360/2949) 0 * Os_TE_255465 Os_TE_255462 Chr6 27490951 27490702 + ORSgTEMT01601122 212 0.8784 (2607/2968) 1 Intact Os_TE_255460 Os_TE_255460 Chr6 27490701 27490906 + ORSgTEMT01601122 212 0.8799 (2629/2988) 1 Intact Os_TE_255462 Os_TE_255459 Chr6 27490018 27489762 - ORSgTEMT00901723 248 0.8915 (2597/2913) 1 Intact Os_TE_255457 Os_TE_255457 Chr6 27489762 27490018 - ORSgTEMT00900099 250 0.8841 (2564/2900) 1 Intact Os_TE_255459 Os_TE_255455 Chr6 27489539 27489540 - ORSgTEMT00600524 364 0.0247 (72/2920) 0 * * Os_TE_255436 Chr6 27484647 27484648 + ORSgTEMT00500498 155 0.5411 (1601/2959) 0 * * Os_TE_255435 Chr6 27484602 27484461 + ORSgTEMT00501795 147 0.8891 (2606/2931) 1 Intact Os_TE_255433 Os_TE_255433 Chr6 27484452 27484596 - ORSgTEMT00502359 149 0.8870 (2520/2841) 1 Intact Os_TE_255435 Os_TE_255431 Chr6 27484415 27484414 - ORSgTEMT00101101 323 0.1250 (350/2801) 0 * * Os_TE_255426 Chr6 27483641 27483642 + STOWAWAY51_OS 246 0.1217 (357/2933) 0 * * Os_TE_255420 Chr6 27482911 27483261 + ORSgTEMT00600272 361 0.8802 (2549/2896) 1 Intact * Os_TE_255415 Chr6 27479684 27479685 - TYPEU1 380 0.1245 (372/2989) 0 * * Os_TE_255413 Chr6 27479023 27479024 + ORSgTEMT00502437 145 0.1202 (357/2970) 0 * * Os_TE_255407 Chr6 27478275 27478274 + TELIA 141 0.0007 (2/2985) 0 * * Os_TE_255404 Chr6 27477219 27477220 + ORSgTEMT00501595 183 0.0007 (2/2966) 0 * * Os_TE_255379 Chr6 27465034 27465033 - NDNA1TNA_OS 334 0.5287 (1576/2981) 0 * Os_TE_255378 Os_TE_255378 Chr6 27465033 27465034 + ORSgTEMT00100949 340 0.5218 (1543/2957) 0 * Os_TE_255379 Os_TE_255376 Chr6 27464811 27464812 + ORSgTEMT00300122 416 0.0303 (90/2967) 0 * Os_TE_255375 Os_TE_255375 Chr6 27464807 27464806 + ORSiTEMT00300001 383 0.0293 (87/2965) 0 * Os_TE_255376 Os_TE_255365 Chr6 27459764 27459763 + ORSgTEMT01600300 235 0.0015 (4/2722) 0 * * Os_TE_255361 Chr6 27459298 27459297 - COPIA2-LTR_OS 6433 0.0007 (2/2992) 0 * * Os_TE_255349 Chr6 27454887 27454888 - RIREX_LTR 8828 0.0003 (1/2969) 0 * * Os_TE_255347 Chr6 27453427 27453428 + ENSPM4_OS 11610 0.0003 (1/2868) 0 * * Os_TE_255289 Chr6 27432315 27432077 - ORSgTEMT01602082 215 0.3485 (1042/2990) 1 Intact Os_TE_255288 Os_TE_255288 Chr6 27432077 27432315 - TREP215 239 0.3333 (976/2928) 1 Intact Os_TE_255289 Os_TE_255241 Chr6 27412418 27412419 + MPING 430 0.0003 (1/2982) 0 * Os_TE_255240 Os_TE_255240 Chr6 27412416 27412415 - MPING 430 0.0003 (1/2985) 0 * Os_TE_255241 Os_TE_255211 Chr6 27395388 27395389 + OSTE20 496 0.0003 (1/2958) 0 * Os_TE_255210 Os_TE_255210 Chr6 27395384 27395383 + OSTE20 496 0.0003 (1/2954) 0 * Os_TE_255211 Os_TE_255209 Chr6 27395276 27395277 - ORSiTERT00100062 5674 0.1963 (583/2970) 0 * Os_TE_255208 Os_TE_255208 Chr6 27395272 27395271 + OSTONOR1_LTR 6440 0.2007 (598/2979) 0 * Os_TE_255209 Os_TE_255185 Chr6 27389644 27389645 + TELIA 141 0.0003 (1/2985) 0 * Os_TE_255184 Os_TE_255184 Chr6 27389636 27389635 - TELIA 141 0.0003 (1/2984) 0 * Os_TE_255185 Os_TE_255180 Chr6 27384305 27384306 + RIREX_LTR 8828 0.0017 (5/2977) 0 * * Os_TE_255172 Chr6 27382348 27382347 + ORSiTERTOOT00020 2547 0.2291 (563/2457) 0 * * Os_TE_255162 Chr6 27379652 27379653 + RETROSAT2LTR 12796 0.0003 (1/2903) 0 * * Os_TE_255159 Chr6 27377536 27373710 - SZ-67LTR 1540 0.3454 (1033/2991) 1 Intact * Os_TE_255130 Chr6 27369510 27369511 - ORSgTEMT00100583 156 0.0010 (3/2941) 0 * * Os_TE_255128 Chr6 27369300 27369301 + TWIF 586 0.0014 (4/2953) 0 * Os_TE_255127 Os_TE_255127 Chr6 27369293 27369292 - ORSiTETNOOT00134 607 0.0014 (4/2947) 0 * Os_TE_255128 Os_TE_255119 Chr6 27365785 27365786 - SC-3_LTR 5748 0.0003 (1/2995) 0 * Os_TE_255118 Os_TE_255118 Chr6 27365781 27365780 + ORSiTERTOOT00296 5553 0.0003 (1/2992) 0 * Os_TE_255119 Os_TE_255117 Chr6 27365508 27365509 - SC-8_LTR 4951 0.0003 (1/2991) 0 * Os_TE_255116 Os_TE_255116 Chr6 27365504 27365503 + SC-8_LTR 4951 0.0003 (1/2994) 0 * Os_TE_255117 Os_TE_255096 Chr6 27345179 27345180 - SC-3_LTR 5748 0.0003 (1/2997) 0 * * Os_TE_255089 Chr6 27341688 27341689 - COPIA2-LTR_OS 6433 0.0017 (5/2993) 0 * Os_TE_255088 Os_TE_255088 Chr6 27341684 27341683 + COPIA2-LTR_OS 6433 0.0013 (4/2992) 0 * Os_TE_255089 Os_TE_255085 Chr6 27341132 27341133 - NDNA2TNA_OS 346 0.5843 (1715/2935) 0 * Os_TE_255084 Os_TE_255084 Chr6 27341130 27341129 + NDNA2TNA_OS 346 0.4241 (919/2167) 0 * Os_TE_255085 Os_TE_255029 Chr6 27313539 27313540 - RETROSAT2LTRA 3112 0.0003 (1/2996) 0 * Os_TE_255028 Os_TE_255028 Chr6 27313535 27313534 + RETROSAT3_LTR 11537 0.0003 (1/2995) 0 * Os_TE_255029 Os_TE_255026 Chr6 27313520 27313519 - TRUNCATOR2_LTR 2904 0.0003 (1/2998) 0 * * Os_TE_255019 Chr6 27305916 27305917 - COPIA2-LTR_OS 6433 0.0003 (1/2977) 0 * Os_TE_255018 Os_TE_255018 Chr6 27305912 27305911 + COPIA2-LTR_OS 6433 0.0003 (1/2982) 0 * Os_TE_255019 Os_TE_255007 Chr6 27302584 27302585 + ORSgTETNOOT00908 242 0.0010 (3/2959) 0 * * Os_TE_255003 Chr6 27299922 27299923 - COPI2_LTR 4733 0.0003 (1/2997) 0 * * Os_TE_254981 Chr6 27275358 27275359 + SC-8_LTR 4951 0.0003 (1/2987) 0 * Os_TE_254980 Os_TE_254980 Chr6 27275354 27275353 - SC-8_LTR 4951 0.0003 (1/2979) 0 * Os_TE_254981 Os_TE_254966 Chr6 27271046 27271047 - RETRO2A_LTR 12895 0.0007 (2/2976) 0 * Os_TE_254965 Os_TE_254965 Chr6 27271042 27271041 + RETRO1_LTR 8314 0.0007 (2/2988) 0 * Os_TE_254966 Os_TE_254954 Chr6 27262114 27262115 - RETROSAT4_LTR 13504 0.0003 (1/2859) 0 * * Os_TE_254952 Chr6 27261667 27261668 - COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_254951 Os_TE_254951 Chr6 27261663 27261662 + COPI2_LTR 4733 0.0003 (1/2997) 0 * Os_TE_254952 Os_TE_254942 Chr6 27254373 27254372 - NDNA1TNA_OS 334 0.0010 (3/2981) 0 * * Os_TE_254876 Chr6 27219260 27219261 - MuDR3_OS 8604 0.6036 (1704/2823) 0 * Os_TE_254875 Os_TE_254875 Chr6 27219251 27219250 - MuDR3_OS 8604 0.5124 (1198/2338) 0 * Os_TE_254876 Os_TE_254873 Chr6 27218442 27218443 + RIRE3_LTR 12054 0.0295 (88/2983) 0 * Os_TE_254872 Os_TE_254872 Chr6 27218438 27218437 - RIRE3_LTR 12054 0.0334 (100/2991) 0 * Os_TE_254873 Os_TE_254871 Chr6 27218217 27218216 - ORSgTETNOOT02565 240 0.0074 (22/2983) 0 * * Os_TE_254849 Chr6 27209669 27209668 + STOWAWAY44_OS 240 0.0010 (3/2978) 0 * Os_TE_254848 Os_TE_254848 Chr6 27209666 27209667 - STOWAWAY44_OS 240 0.0010 (3/2973) 0 * Os_TE_254849 Os_TE_254805 Chr6 27205045 27205046 - ORSgTEMT00900099 250 0.0080 (24/2991) 0 * Os_TE_254804 Os_TE_254804 Chr6 27205044 27205043 + ORSgTEMT00901844 250 0.0084 (25/2985) 0 * Os_TE_254805 Os_TE_254803 Chr6 27204766 27204765 + ORSgTEMT00101341 314 0.0083 (25/2995) 0 * Os_TE_254802 Os_TE_254802 Chr6 27204765 27204766 - NDNA1TNA_OS 334 0.0080 (24/2996) 0 * Os_TE_254803 Os_TE_254800 Chr6 27201816 27201815 + ORSgTERT00201086 9728 0.0003 (1/2919) 0 * * Os_TE_254799 Chr6 27200665 27200666 + SZ-17_LTR 3387 0.0003 (1/2984) 0 * Os_TE_254798 Os_TE_254798 Chr6 27200661 27200660 - SZ-17_LTR 3387 0.0003 (1/2988) 0 * Os_TE_254799 Os_TE_254782 Chr6 27196242 27196243 - RIREX_LTR 8828 0.0377 (100/2655) 0 * Os_TE_254781 Os_TE_254781 Chr6 27196238 27196237 + RIREX_LTR 8828 0.0346 (98/2833) 0 * Os_TE_254782 Os_TE_254766 Chr6 27182985 27182984 + SZ-48LTR 3632 0.0010 (3/2919) 0 * * Os_TE_254759 Chr6 27181534 27181533 - RETROSAT5_LTR 13878 0.0023 (7/2981) 0 * * Os_TE_254757 Chr6 27181416 27181415 - RETROSAT3_LTR 11537 0.3550 (1060/2986) 0 * * Os_TE_254734 Chr6 27170585 27170586 - MPING 430 0.0003 (1/2985) 0 * Os_TE_254733 Os_TE_254733 Chr6 27170583 27170582 + MPING 430 0.0003 (1/2984) 0 * Os_TE_254734 Os_TE_254723 Chr6 27164962 27164963 + RIRE3_LTR 12054 0.0003 (1/2983) 0 * * Os_TE_254714 Chr6 27158740 27158741 + TYPEU4 402 0.0087 (26/2997) 0 * * Os_TE_254698 Chr6 27156251 27156252 + STOWAWAY18_OS 216 0.0080 (24/2994) 0 * * Os_TE_254696 Chr6 27156077 27156076 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * * Os_TE_254695 Chr6 27156060 27156061 + TYPEU4 402 0.0087 (26/2993) 0 * * Os_TE_254694 Chr6 27155035 27155036 - SC-10_LTR 4920 0.0084 (25/2974) 0 * * Os_TE_254687 Chr6 27154602 27154880 - SUSU 279 0.6471 (1931/2984) 1 Intact * Os_TE_254684 Chr6 27149650 27149651 - SC-4_LTR 5218 0.0037 (11/2998) 0 * Os_TE_254683 Os_TE_254683 Chr6 27149646 27149645 + SC-4_LTR 5218 0.0037 (11/2999) 0 * Os_TE_254684 Os_TE_254677 Chr6 27148192 27148191 + RETRO2A_LTR 12895 0.1296 (387/2986) 0 * * Os_TE_254671 Chr6 27146562 27146563 - ORSgTEMT00600192 355 0.0003 (1/2910) 0 * * Os_TE_254670 Chr6 27146539 27146540 + ORSgTEMT00600124 361 0.1329 (398/2994) 0 * * Os_TE_254664 Chr6 27141639 27141640 - TYPEM 227 0.0003 (1/2971) 0 * Os_TE_254663 Os_TE_254663 Chr6 27141638 27141637 - ORSgTEMT02400179 221 0.0003 (1/2975) 0 * Os_TE_254664 Os_TE_254660 Chr6 27137027 27137028 + ORSiTERTOOT00296 5553 0.0010 (3/2995) 0 * Os_TE_254659 Os_TE_254659 Chr6 27137023 27137022 - SC-3_LTR 5748 0.0010 (3/2989) 0 * Os_TE_254660 Os_TE_254653 Chr6 27131041 27131042 + AMYLTP 383 0.0007 (2/2920) 0 * Os_TE_254652 Os_TE_254652 Chr6 27131033 27131032 - AMYLTP 383 0.0011 (2/1813) 0 * Os_TE_254653 Os_TE_254627 Chr6 27120366 27120367 + MUDRN5_OS 374 0.0003 (1/2984) 0 * * Os_TE_254626 Chr6 27120358 27120359 + ORSgTEMT00700017 386 0.0003 (1/2982) 0 * * Os_TE_254614 Chr6 27117820 27117821 + MPING 430 0.0010 (3/2976) 0 * Os_TE_254613 Os_TE_254613 Chr6 27117818 27117817 - MPING 430 0.0010 (3/2985) 0 * Os_TE_254614 Os_TE_254609 Chr6 27117118 27117117 + ORSiTERTOOT00167 1524 0.0003 (1/2898) 0 * * Os_TE_254603 Chr6 27114535 27114536 - TAMI2 254 0.0004 (1/2851) 0 * * Os_TE_254601 Chr6 27112736 27112737 - ENSPM3_OS 10837 0.6514 (1867/2866) 0 * Os_TE_254600 Os_TE_254600 Chr6 27112734 27112733 + ENSPM3_OS 10837 0.6626 (1911/2884) 0 * Os_TE_254601 Os_TE_254579 Chr6 27107781 27107780 - ORSgTEMT01602603 239 0.6193 (1819/2937) 0 * Os_TE_254578 Os_TE_254578 Chr6 27107771 27107772 + ORSgTEMT01602051 240 0.6241 (1846/2958) 0 * Os_TE_254579 Os_TE_254577 Chr6 27107639 27107403 - ORSgTETNOOT01607 258 0.4184 (1194/2854) 1 Intact * Os_TE_254565 Chr6 27106806 27106805 - RETRO2_LTR 12874 0.0096 (26/2717) 0 * * Os_TE_254563 Chr6 27106637 27106636 + OSTE20 496 0.5515 (1463/2653) 0 * * Os_TE_254559 Chr6 27104071 27104072 - ORSgTETNOOT01413 258 0.0513 (135/2632) 0 * Os_TE_254558 Os_TE_254558 Chr6 27104068 27104067 - ORSgTETNOOT01413 258 0.0479 (139/2900) 0 * Os_TE_254559 Os_TE_254557 Chr6 27103965 27103964 + ORSgTETNOOT01846 238 0.0004 (1/2846) 0 * * Os_TE_254555 Chr6 27102849 27102850 + OSTONOR1_LTR 6440 0.0030 (9/2994) 0 * Os_TE_254554 Os_TE_254554 Chr6 27102845 27102844 - ORSiTERT00100062 5674 0.0033 (10/2987) 0 * Os_TE_254555 Os_TE_254542 Chr6 27099012 27099011 + ORSgTEMT01601122 212 0.1032 (305/2955) 0 * * Os_TE_254540 Chr6 27098937 27098938 - ORSgTETN00200001 10994 0.4963 (1410/2841) 0 * Os_TE_254539 Os_TE_254539 Chr6 27098935 27098934 + SPMLIKE 10989 0.5256 (1561/2970) 0 * Os_TE_254540 Os_TE_254533 Chr6 27096881 27096882 - AMYLTP 383 0.0010 (3/2992) 0 * Os_TE_254532 Os_TE_254532 Chr6 27096873 27096872 + AMYLTP 383 0.0010 (3/2986) 0 * Os_TE_254533 Os_TE_254496 Chr6 27076715 27076716 - SINE9_OS 293 0.1048 (314/2995) 0 * * Os_TE_254480 Chr6 27069523 27069524 - ORSgTEMT01602262 235 0.0017 (5/2984) 0 * * Os_TE_254447 Chr6 27053992 27053991 - RIREX_LTR 8828 0.0007 (2/2899) 0 * * Os_TE_254441 Chr6 27052145 27052146 - RETROSAT2LTR 12796 0.0253 (75/2966) 0 * * Os_TE_254437 Chr6 27050984 27050983 - STOWAWAY44_OS 240 0.0003 (1/2897) 0 * * Os_TE_254432 Chr6 27050336 27050337 - COPIA2-LTR_OS 6433 0.0007 (2/2873) 0 * * Os_TE_254429 Chr6 27050187 27050186 + ORSgTETNOOT01834 251 0.0003 (1/2914) 0 * * Os_TE_254424 Chr6 27049916 27049917 - COPIA2-LTR_OS 6433 0.0004 (1/2847) 0 * Os_TE_254423 Os_TE_254423 Chr6 27049912 27049911 + COPIA2-LTR_OS 6433 0.0010 (1/994) 0 * Os_TE_254424 Os_TE_254355 Chr6 27020676 27020677 + STOWAWAY51_OS 246 0.0003 (1/2980) 0 * * Os_TE_254341 Chr6 27017143 27017144 + OSTE33 1012 0.0486 (143/2941) 0 * Os_TE_254340 Os_TE_254340 Chr6 27017134 27017133 + OSTE33 1012 0.0465 (137/2948) 0 * Os_TE_254341 Os_TE_254322 Chr6 27013771 27013770 + MuDR4_OS 7610 0.6020 (1782/2960) 0 * * Os_TE_254228 Chr6 26992252 26992253 + RIREX_LTR 8828 0.0007 (2/2992) 0 * Os_TE_254227 Os_TE_254227 Chr6 26992248 26992247 - RIREX_LTR 8828 0.0007 (2/2993) 0 * Os_TE_254228 Os_TE_254225 Chr6 26992060 26992059 + ORSgTETN00100092 209 0.5319 (1593/2995) 0 * * Os_TE_254204 Chr6 26976558 26976559 - NDNA1TNA_OS 334 0.0494 (146/2955) 0 * Os_TE_254203 Os_TE_254203 Chr6 26976556 26976555 + NDNA1TNA_OS 334 0.0495 (146/2952) 0 * Os_TE_254204 Os_TE_254194 Chr6 26974731 26974732 + SPMLIKE 10989 0.0003 (1/2958) 0 * * Os_TE_254156 Chr6 26963314 26963315 - RIREX_LTR 8828 0.0484 (140/2890) 0 * * Os_TE_254147 Chr6 26960692 26960693 - MERMITEA 1710 0.0014 (4/2892) 0 * * Os_TE_254137 Chr6 26955248 26955249 - RIRE5-LTR_OS 6427 0.0007 (2/2992) 0 * Os_TE_254136 Os_TE_254136 Chr6 26955241 26955240 + RIRE5-LTR_OS 6427 0.0007 (2/2992) 0 * Os_TE_254137 Os_TE_254128 Chr6 26951237 26951238 + CASTAWAY 364 0.0723 (214/2959) 0 * * Os_TE_254125 Chr6 26950735 26950736 - COPIA2-LTR_OS 6433 0.0003 (1/2955) 0 * Os_TE_254124 Os_TE_254124 Chr6 26950731 26950730 - COPIA2-LTR_OS 6433 0.0003 (1/2951) 0 * Os_TE_254125 Os_TE_254123 Chr6 26950640 26950639 + JOUZHEN 596 0.0007 (2/2928) 0 * * Os_TE_254121 Chr6 26950272 26950273 - RETRO2_LTR 12874 0.5332 (1574/2952) 0 * * Os_TE_254114 Chr6 26948545 26948544 - INDITTO 263 0.0007 (2/2996) 0 * * Os_TE_254086 Chr6 26938455 26938456 - ORSgTEMT00400006 152 0.0007 (2/2987) 0 * * Os_TE_254063 Chr6 26933868 26933869 - INDITTO 263 0.0007 (2/2992) 0 * Os_TE_254062 Os_TE_254062 Chr6 26933866 26933865 - ORSgTETNOOT02417 265 0.0007 (2/2993) 0 * Os_TE_254063 Os_TE_254017 Chr6 26901596 26901597 - COPIA2-LTR_OS 6433 0.0003 (1/2967) 0 * Os_TE_254016 Os_TE_254016 Chr6 26901592 26901591 + COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_254017 Os_TE_253993 Chr6 26898193 26898194 + COPIA2-LTR_OS 6433 0.0007 (2/2970) 0 * Os_TE_253992 Os_TE_253992 Chr6 26898189 26898188 - COPIA2-LTR_OS 6433 0.0007 (2/2978) 0 * Os_TE_253993 Os_TE_253972 Chr6 26892391 26892392 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_253971 Os_TE_253971 Chr6 26892387 26892386 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_253972 Os_TE_253947 Chr6 26885579 26885580 - COPI2_LTR 4733 0.0003 (1/2993) 0 * * Os_TE_253913 Chr6 26876820 26876821 - ORSgTEMT01602292 239 0.0008 (2/2507) 0 * * Os_TE_253856 Chr6 26853038 26853037 - ORSgTETNOOT00754 253 0.0705 (209/2964) 0 * * Os_TE_253847 Chr6 26849602 26849603 + GYPSY-A_LTR 8951 0.0003 (1/2953) 0 * * Os_TE_253832 Chr6 26842355 26842354 + TWIF 586 0.0577 (168/2911) 0 * * Os_TE_253765 Chr6 26825945 26825946 + STOWAWAY11_OS 292 0.0003 (1/2946) 0 * * Os_TE_253764 Chr6 26825393 26825392 - LINE-4_OS 3662 0.0528 (157/2971) 0 * * Os_TE_253729 Chr6 26814935 26814575 - ORSgTEMT00600085 364 0.3478 (1004/2887) 1 Intact Os_TE_253726 Os_TE_253726 Chr6 26814573 26814929 + ORSgTEMT00600502 360 0.3495 (1009/2887) 1 Intact Os_TE_253729 Os_TE_253720 Chr6 26806704 26806703 - RIREX_LTR 8828 0.0017 (5/2935) 0 * * Os_TE_253702 Chr6 26802912 26802913 + AMYLTP 383 0.0201 (60/2981) 0 * * Os_TE_253697 Chr6 26799229 26798503 - MDM2 312 0.3259 (889/2728) 1 Intact * Os_TE_253695 Chr6 26797001 26797002 - MPING 430 0.0003 (1/2979) 0 * * Os_TE_253692 Chr6 26796980 26796979 + MPING 430 0.0003 (1/2993) 0 * * Os_TE_253689 Chr6 26796633 26796634 - INDITTO 263 0.0252 (75/2971) 0 * Os_TE_253688 Os_TE_253688 Chr6 26796631 26796630 - ORSgTETNOOT00053 263 0.0247 (73/2960) 0 * Os_TE_253689 Os_TE_253686 Chr6 26795335 26795334 + COPIA1-LTR_OS 9292 0.0003 (1/2925) 0 * * Os_TE_253681 Chr6 26794658 26794659 - OLO24 345 0.0003 (1/2992) 0 * * Os_TE_253614 Chr6 26757157 26757158 - COPI2_LTR 4733 0.0003 (1/2988) 0 * * Os_TE_253612 Chr6 26756408 26756409 - AMYLTP 383 0.0374 (112/2993) 0 * * Os_TE_253570 Chr6 26743004 26743005 - SC-8_LTR 4951 0.0003 (1/2998) 0 * Os_TE_253569 Os_TE_253569 Chr6 26743000 26742999 + SC-8_LTR 4951 0.0003 (1/2990) 0 * Os_TE_253570 Os_TE_253467 Chr6 26716064 26716063 + ORSgTEMT01602637 232 0.0003 (1/2974) 0 * * Os_TE_253462 Chr6 26712968 26712967 + AMYLTP 383 0.6885 (2053/2982) 0 * * Os_TE_253455 Chr6 26707955 26707956 + INDITTO 263 0.0004 (1/2824) 0 * Os_TE_253454 Os_TE_253454 Chr6 26707953 26707952 - INDITTO 263 0.0007 (2/2929) 0 * Os_TE_253455 Os_TE_253436 Chr6 26702645 26703790 + CACTA-I 1124 0.8319 (985/1184) 1 Intact * Os_TE_253406 Chr6 26695872 26695873 - SC-4_LTR 5218 0.0003 (1/2930) 0 * * Os_TE_253382 Chr6 26688040 26688039 - SC-8_LTR 4951 0.0003 (1/2873) 0 * * Os_TE_253373 Chr6 26680010 26680011 + ORSiTETN00100011 676 0.0456 (134/2939) 0 * Os_TE_253371 Os_TE_253371 Chr6 26679999 26679998 + DS-RICE4N 715 0.0454 (133/2931) 0 * Os_TE_253373 Os_TE_253363 Chr6 26678016 26678017 - COPI2_LTR 4733 0.0007 (2/2994) 0 * Os_TE_253362 Os_TE_253362 Chr6 26678012 26678011 + COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_253363 Os_TE_253317 Chr6 26664749 26664750 + MPING 430 0.0009 (1/1115) 0 * * Os_TE_253315 Chr6 26663216 26663217 - SC-3_LTR 5748 0.0003 (1/2985) 0 * Os_TE_253314 Os_TE_253314 Chr6 26663212 26663211 + ORSiTERTOOT00296 5553 0.0003 (1/2986) 0 * Os_TE_253315 Os_TE_253289 Chr6 26648861 26648862 + RETRO2A_LTR 12895 0.0028 (8/2889) 0 * * Os_TE_253278 Chr6 26647225 26647224 - COPI2_LTR 4733 0.0003 (1/2879) 0 * * Os_TE_253223 Chr6 26627018 26627019 - INDITTO 263 0.0003 (1/2994) 0 * Os_TE_253222 Os_TE_253222 Chr6 26627016 26627015 + INDITTO 263 0.0003 (1/2998) 0 * Os_TE_253223 Os_TE_253206 Chr6 26625906 26625907 + ORSgTETNOOT01219 231 0.0007 (2/2983) 0 * Os_TE_253205 Os_TE_253205 Chr6 26625900 26625899 + ORSgTETNOOT00908 242 0.0010 (3/2987) 0 * Os_TE_253206 Os_TE_253198 Chr6 26623887 26623644 + ORSgTETNOOT01668 244 0.3663 (1093/2984) 1 Intact Os_TE_253197 Os_TE_253197 Chr6 26623644 26623887 - TESS 244 0.3583 (1057/2950) 1 Intact Os_TE_253198 Os_TE_253196 Chr6 26623442 26623441 - ORSgTEMT01601432 239 0.0367 (109/2968) 0 * Os_TE_253195 Os_TE_253195 Chr6 26623439 26623440 + ORSgTEMT01602181 239 0.0348 (103/2959) 0 * Os_TE_253196 Os_TE_253179 Chr6 26621439 26621440 - OLO24 345 0.0380 (113/2970) 0 * Os_TE_253178 Os_TE_253178 Chr6 26621437 26621436 + OLO24 345 0.0361 (107/2967) 0 * Os_TE_253179 Os_TE_253167 Chr6 26620489 26620490 + F1275 157 0.0017 (5/2924) 0 * * Os_TE_253160 Chr6 26619423 26619546 - ORSgTEMT01702253 143 0.7858 (1240/1578) 1 Intact * Os_TE_253146 Chr6 26617131 26617132 - COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * * Os_TE_253121 Chr6 26613379 26613380 + ORSgTETNOOT00221 261 0.0003 (1/2981) 0 * Os_TE_253120 Os_TE_253120 Chr6 26613377 26613376 - ORSgTETNOOT00053 263 0.0003 (1/2984) 0 * Os_TE_253121 Os_TE_253087 Chr6 26601762 26601763 - INDITTO 263 0.0003 (1/2963) 0 * * Os_TE_253085 Chr6 26601685 26601684 + ORSgTEMT01900005 333 0.0007 (2/2970) 0 * * Os_TE_253079 Chr6 26601200 26601462 - ORSgTETNOOT02000 263 0.3757 (1081/2877) 1 Intact * Os_TE_253077 Chr6 26601091 26601090 - INDITTO 263 0.0003 (1/2880) 0 * * Os_TE_253061 Chr6 26598728 26598729 - ORSiTERTOOT00074 4935 0.0023 (7/2982) 0 * Os_TE_253060 Os_TE_253060 Chr6 26598724 26598723 + ORSiTERTOOT00074 4935 0.0020 (6/2986) 0 * Os_TE_253061 Os_TE_253055 Chr6 26597560 26597561 - MPING 430 0.0007 (2/2918) 0 * * Os_TE_253049 Chr6 26593832 26593831 + ORSgTEMT01601983 238 0.0013 (4/2970) 0 * Os_TE_253048 Os_TE_253048 Chr6 26593829 26593830 - ORSgTEMT01601834 234 0.0017 (5/2970) 0 * Os_TE_253049 Os_TE_253001 Chr6 26577579 26577578 + SZ-54_LTR 5203 0.0003 (1/2989) 0 * * Os_TE_252976 Chr6 26566756 26566755 - SC-3_LTR 5748 0.0023 (7/2995) 0 * * Os_TE_252946 Chr6 26554523 26554524 - MPING 430 0.0007 (2/2972) 0 * Os_TE_252945 Os_TE_252945 Chr6 26554521 26554520 + MPING 430 0.0007 (2/2980) 0 * Os_TE_252946 Os_TE_252933 Chr6 26552144 26552143 + CACTA-G1 797 0.0090 (27/2993) 0 * * Os_TE_252931 Chr6 26551613 26551614 + ORSgTETNOOT01219 231 0.0003 (1/2997) 0 * * Os_TE_252921 Chr6 26550488 26550489 - SZ-22_LTR 4403 0.0003 (1/2975) 0 * Os_TE_252920 Os_TE_252920 Chr6 26550484 26550483 + ORSiTERTOOT00226 792 0.0003 (1/2968) 0 * Os_TE_252921 Os_TE_252917 Chr6 26549936 26549937 + COPI2_LTR 4733 0.0048 (14/2925) 0 * Os_TE_252916 Os_TE_252916 Chr6 26549932 26549931 - COPI2_LTR 4733 0.0051 (15/2913) 0 * Os_TE_252917 Os_TE_252887 Chr6 26544956 26544957 - STOWAWAY51_OS 246 0.0003 (1/2973) 0 * Os_TE_252886 Os_TE_252886 Chr6 26544940 26544939 - STOWAWAY51_OS 246 0.0014 (4/2954) 0 * Os_TE_252887 Os_TE_252885 Chr6 26544934 26544935 + STOWAWAY51_OS 246 0.0013 (4/2976) 0 * * Os_TE_252857 Chr6 26529299 26529300 + TWIFB1 3737 0.0007 (2/2996) 0 * * Os_TE_252807 Chr6 26519132 26519133 + STOWAWAY51_OS 246 0.0026 (7/2643) 0 * * Os_TE_252795 Chr6 26516307 26516306 + RIREX_LTR 8828 0.0003 (1/2994) 0 * * Os_TE_252790 Chr6 26515469 26515468 + STOWAWAY51_OS 246 0.0260 (31/1191) 0 * * Os_TE_252779 Chr6 26511848 26511849 - AMYLTP 383 0.0003 (1/2990) 0 * Os_TE_252778 Os_TE_252778 Chr6 26511840 26511839 + AMYLTP 383 0.0003 (1/2990) 0 * Os_TE_252779 Os_TE_252749 Chr6 26505717 26505716 + CLOUD-3 550 0.0004 (1/2847) 0 * * Os_TE_252728 Chr6 26495755 26495756 + RETRO2A_LTR 12895 0.6802 (2040/2999) 0 * Os_TE_252727 Os_TE_252727 Chr6 26495751 26495750 - RETRO2_LTR 12874 0.6800 (2038/2997) 0 * Os_TE_252728 Os_TE_252719 Chr6 26493991 26493992 + TWIFB1 3737 0.0022 (6/2756) 0 * * Os_TE_252612 Chr6 26464012 26464011 + AMYLTP 383 0.0033 (10/2991) 0 * * Os_TE_252599 Chr6 26459408 26459407 + ORSiTERTOOT00226 792 0.0003 (1/2995) 0 * * Os_TE_252597 Chr6 26459371 26459372 - MPING 430 0.0003 (1/2996) 0 * Os_TE_252596 Os_TE_252596 Chr6 26459369 26459368 + MPING 430 0.0003 (1/2998) 0 * Os_TE_252597 Os_TE_252581 Chr6 26444359 26444360 - COPI2_LTR 4733 0.0007 (2/2974) 0 * Os_TE_252580 Os_TE_252580 Chr6 26444355 26444354 + COPI2_LTR 4733 0.0007 (2/2972) 0 * Os_TE_252581 Os_TE_252574 Chr6 26441066 26441065 - TRUNCATOR 2918 0.0695 (207/2980) 0 * Os_TE_252573 Os_TE_252573 Chr6 26441065 26441066 + TRUNCATOR 2918 0.0748 (224/2993) 0 * Os_TE_252574 Os_TE_252545 Chr6 26432443 26432444 - INDITTO 263 0.5342 (1586/2969) 0 * Os_TE_252544 Os_TE_252544 Chr6 26432441 26432440 + INDITTO 263 0.5241 (1545/2948) 0 * Os_TE_252545 Os_TE_252530 Chr6 26429667 26429666 - STOWAWAY51_OS 246 0.0003 (1/2987) 0 * Os_TE_252529 Os_TE_252529 Chr6 26429664 26429665 - STOWAWAY51_OS 246 0.0003 (1/2979) 0 * Os_TE_252530 Os_TE_252521 Chr6 26421154 26421155 + ORSgTEMT00500247 149 0.6833 (2022/2959) 0 * * Os_TE_252485 Chr6 26410428 26410429 - SC-8_LTR 4951 0.0017 (5/2994) 0 * Os_TE_252484 Os_TE_252484 Chr6 26410424 26410423 + SC-8_LTR 4951 0.0020 (6/2994) 0 * Os_TE_252485 Os_TE_252461 Chr6 26394471 26394470 - TRUNCATOR 2918 0.0011 (3/2767) 0 * Os_TE_252460 Os_TE_252460 Chr6 26394470 26394471 + TRUNCATOR 2918 0.0018 (5/2763) 0 * Os_TE_252461 Os_TE_252457 Chr6 26394164 26394163 - F569 228 0.0003 (1/2989) 0 * * Os_TE_252439 Chr6 26390585 26390847 - ORSgTETNOOT02000 263 0.5036 (915/1817) -1 Intact * Os_TE_252434 Chr6 26389902 26389901 + STOWAWAY51_OS 246 0.0003 (1/2972) 0 * Os_TE_252433 Os_TE_252433 Chr6 26389896 26389897 - STOWAWAY51_OS 246 0.0003 (1/2972) 0 * Os_TE_252434 Os_TE_252405 Chr6 26383834 26383833 + AMYLTP 383 0.0853 (254/2976) 0 * * Os_TE_252398 Chr6 26382178 26382179 - RIREX_LTR 8828 0.0003 (1/2987) 0 * * Os_TE_252375 Chr6 26374997 26374996 - ORSiTETNOOT00134 607 0.0005 (1/1957) 0 * * Os_TE_252362 Chr6 26367629 26367630 - SC-8_LTR 4951 0.0003 (1/2984) 0 * Os_TE_252361 Os_TE_252361 Chr6 26367625 26367624 + SC-8_LTR 4951 0.0003 (1/2985) 0 * Os_TE_252362 Os_TE_252359 Chr6 26364984 26364985 + SC-8_LTR 4951 0.0010 (3/2972) 0 * Os_TE_252358 Os_TE_252358 Chr6 26364980 26364979 - SC-8_LTR 4951 0.0010 (3/2977) 0 * Os_TE_252359 Os_TE_252319 Chr6 26348256 26348257 - HARB-1_OS 5166 0.0777 (232/2987) 0 * Os_TE_252318 Os_TE_252318 Chr6 26348254 26348253 + HARB-1_OS 5166 0.0766 (229/2990) 0 * Os_TE_252319 Os_TE_252291 Chr6 26328690 26328691 + COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_252290 Os_TE_252290 Chr6 26328686 26328685 - COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_252291 Os_TE_252289 Chr6 26327897 26327896 + TRUNCATOR 2918 0.0870 (260/2989) 0 * Os_TE_252288 Os_TE_252288 Chr6 26327896 26327897 - TRUNCATOR 2918 0.0801 (239/2982) 0 * Os_TE_252289 Os_TE_252243 Chr6 26309613 26309614 - SC-8_LTR 4951 0.0010 (3/2994) 0 * Os_TE_252242 Os_TE_252242 Chr6 26309609 26309608 + SC-8_LTR 4951 0.0010 (3/2993) 0 * Os_TE_252243 Os_TE_252236 Chr6 26298589 26298588 + SC-8_LTR 4951 0.0003 (1/2947) 0 * * Os_TE_252233 Chr6 26296595 26296596 + MPING 430 0.0003 (1/2944) 0 * Os_TE_252232 Os_TE_252232 Chr6 26296593 26296592 - MPING 430 0.0003 (1/2946) 0 * Os_TE_252233 Os_TE_252207 Chr6 26291103 26291104 + SC-8_LTR 4951 0.0017 (5/2989) 0 * Os_TE_252206 Os_TE_252206 Chr6 26291099 26291098 - SC-8_LTR 4951 0.0017 (5/2992) 0 * Os_TE_252207 Os_TE_252201 Chr6 26283933 26283934 - SC-3_LTR 5748 0.0003 (1/2992) 0 * * Os_TE_252195 Chr6 26280775 26280776 - SC-3_LTR 5748 0.0003 (1/2990) 0 * Os_TE_252194 Os_TE_252194 Chr6 26280771 26280770 + ORSiTERTOOT00296 5553 0.0003 (1/2992) 0 * Os_TE_252195 Os_TE_252172 Chr6 26272101 26272100 + CASTAWAY 364 0.4646 (1372/2953) 0 * * Os_TE_252171 Chr6 26271864 26271865 - MPING 430 0.0003 (1/2985) 0 * * Os_TE_252142 Chr6 26261409 26261410 - SZ-62LTR 3649 0.6823 (2040/2990) 0 * Os_TE_252141 Os_TE_252141 Chr6 26261406 26261405 + SZ-62LTR 3649 0.6802 (2021/2971) 0 * Os_TE_252142 Os_TE_252138 Chr6 26260504 26260503 + ORSgTEMT01602181 239 0.0007 (2/2919) 0 * * Os_TE_252131 Chr6 26260161 26260162 - ORSiTERTOOT00074 4935 0.0003 (1/2963) 0 * * Os_TE_252128 Chr6 26259646 26259647 - INDITTO 263 0.3406 (546/1603) 0 * * Os_TE_252125 Chr6 26258991 26258992 + COPIA2-LTR_OS 6433 0.0010 (3/2984) 0 * Os_TE_252124 Os_TE_252124 Chr6 26258987 26258986 - COPIA2-LTR_OS 6433 0.0010 (3/2971) 0 * Os_TE_252125 Os_TE_252115 Chr6 26253454 26253455 + COPIA2-LTR_OS 6433 0.0007 (2/2985) 0 * Os_TE_252114 Os_TE_252114 Chr6 26253450 26253449 - COPIA2-LTR_OS 6433 0.0007 (2/2984) 0 * Os_TE_252115 Os_TE_252113 Chr6 26253174 26253173 + ORSiTERTOOT00226 792 0.0003 (1/2984) 0 * * Os_TE_252112 Chr6 26252505 26252506 + COPIA2-LTR_OS 6433 0.0010 (3/2969) 0 * Os_TE_252111 Os_TE_252111 Chr6 26252501 26252500 - COPIA2-LTR_OS 6433 0.0010 (3/2975) 0 * Os_TE_252112 Os_TE_252100 Chr6 26246969 26246970 + SC-8_LTR 4951 0.0003 (1/2996) 0 * Os_TE_252099 Os_TE_252099 Chr6 26246965 26246964 - SC-8_LTR 4951 0.0003 (1/2995) 0 * Os_TE_252100 Os_TE_252086 Chr6 26240034 26240035 - COPIA2-LTR_OS 6433 0.0017 (5/2994) 0 * Os_TE_252085 Os_TE_252085 Chr6 26240030 26240029 + COPIA2-LTR_OS 6433 0.0017 (5/2993) 0 * Os_TE_252086 Os_TE_252069 Chr6 26233877 26233878 - SETARIA 1402 0.0398 (118/2965) 0 * Os_TE_252068 Os_TE_252068 Chr6 26233869 26233868 + SETARIA 1402 0.0411 (122/2970) 0 * Os_TE_252069 Os_TE_252039 Chr6 26222539 26222540 + JOUZHEN 596 0.0419 (124/2960) 0 * * Os_TE_252035 Chr6 26219042 26219043 + COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * * Os_TE_251980 Chr6 26183802 26183801 - OSTE21 1271 0.0003 (1/2975) 0 * Os_TE_251979 Os_TE_251979 Chr6 26183793 26183794 - OSTE21 1271 0.0003 (1/2986) 0 * Os_TE_251980 Os_TE_251959 Chr6 26176134 26176135 - OLO24C 356 0.6849 (2041/2980) 0 * * Os_TE_251944 Chr6 26171497 26171498 - SZ-67LTR 1540 0.6897 (2060/2987) 0 * Os_TE_251943 Os_TE_251943 Chr6 26171495 26171494 + SZ-67LTR 1540 0.6751 (1964/2909) 0 * Os_TE_251944 Os_TE_251892 Chr6 26150098 26150097 + COPI2_LTR 4733 0.0003 (1/2928) 0 * * Os_TE_251846 Chr6 26125623 26125622 + COPI2_LTR 4733 0.0003 (1/2988) 0 * * Os_TE_251834 Chr6 26122445 26109577 + ORSgTERTOOT00009 12852 0.3246 (958/2951) 1 Intact Os_TE_251827 Os_TE_251827 Chr6 26109577 26122384 - RETRO2_LTR 12874 0.3277 (964/2942) 1 Intact Os_TE_251834 Os_TE_251826 Chr6 26109505 26109506 - TRUNCATOR2_LTR 2904 0.0003 (1/2921) 0 * * Os_TE_251825 Chr6 26108312 26108313 - OSTONOR1_LTR 6440 0.3563 (1066/2992) 0 * Os_TE_251824 Os_TE_251824 Chr6 26108308 26108307 + OSTONOR1_LTR 6440 0.0688 (148/2150) 0 * Os_TE_251825 Os_TE_251798 Chr6 26096499 26096498 - TRUNCATOR 2918 0.0017 (5/2993) 0 * Os_TE_251797 Os_TE_251797 Chr6 26096498 26096499 - Cassandra_OS-LTR 764 0.0017 (5/2991) 0 * Os_TE_251798 Os_TE_251792 Chr6 26094597 26094596 + CACTA-H 1152 0.3568 (987/2766) 0 * * Os_TE_251782 Chr6 26091815 26091480 + OLO24 345 0.6736 (2006/2978) 1 Intact * Os_TE_251774 Chr6 26089447 26089446 - ORSgTEMT01400022 212 0.3151 (886/2812) 0 * * Os_TE_251763 Chr6 26082237 26082236 - ORSiTEMT01500003 257 0.0004 (1/2589) 0 * * Os_TE_251762 Chr6 26081903 26081904 + F524 291 0.0004 (1/2649) 0 * * Os_TE_251751 Chr6 26079220 26079221 + ORSgTEMT01601591 242 0.0003 (1/2970) 0 * Os_TE_251750 Os_TE_251750 Chr6 26079217 26079216 + STOWAWAY51_OS 246 0.0003 (1/2966) 0 * Os_TE_251751 Os_TE_251729 Chr6 26072077 26072078 + ORSgTEMT00901798 232 0.0013 (4/2987) 0 * * Os_TE_251728 Chr6 26071540 26071541 + RIRE5-LTR_OS 6427 0.0003 (1/2995) 0 * * Os_TE_251717 Chr6 26065437 26065438 - TNR9 176 0.0017 (5/2981) 0 * * Os_TE_251711 Chr6 26062368 26062367 - COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * * Os_TE_251710 Chr6 26062274 26062273 - TYPEM 227 0.6880 (2060/2994) 0 * * Os_TE_251709 Chr6 26062260 26062038 + ORSgTEMT00901230 241 0.3211 (959/2987) 1 Intact * Os_TE_251698 Chr6 26059491 26058544 + COPIA2-LTR_OS 6433 0.3720 (1086/2919) 1 Solo_LTR * Os_TE_251672 Chr6 26044954 26044953 + STOWAWAY51_OS 246 0.0212 (62/2930) 0 * Os_TE_251671 Os_TE_251671 Chr6 26044948 26044949 + ORSgTEMT01601591 242 0.0173 (50/2889) 0 * Os_TE_251672 Os_TE_251653 Chr6 26038465 26038464 + ORSgTETNOOT01566 259 0.0013 (4/2963) 0 * * Os_TE_251647 Chr6 26037236 26037237 - ENSPM3_OS 10837 0.0012 (3/2450) 0 * * Os_TE_251637 Chr6 26034391 26034390 - SZ-35LTR 3853 0.0018 (1/544) -1 * * Os_TE_251627 Chr6 26032768 26032769 + ZM13-1_OS 139 0.0003 (1/2948) 0 * * Os_TE_251592 Chr6 26023348 26023347 + ORSiTERTOOT00402 2660 0.0003 (1/2969) 0 * * Os_TE_251587 Chr6 26018787 26018788 - ORSgTETNOOT00754 253 0.0007 (2/2945) 0 * * Os_TE_251585 Chr6 26018613 26018612 - ENSPM4_OS 11610 0.0003 (1/2975) 0 * * Os_TE_251551 Chr6 26000767 26000768 + RIREX_LTR 8828 0.0040 (12/2995) 0 * Os_TE_251550 Os_TE_251550 Chr6 26000763 26000762 - RIREX_LTR 8828 0.0040 (12/2995) 0 * Os_TE_251551 Os_TE_251549 Chr6 26000024 26000025 - MPING 430 0.0007 (2/2972) 0 * Os_TE_251548 Os_TE_251548 Chr6 26000022 26000021 + MPING 430 0.0007 (2/2982) 0 * Os_TE_251549 Os_TE_251546 Chr6 25999702 25999701 - RETRO2_LTR 12874 0.0495 (147/2969) 0 * * Os_TE_251525 Chr6 25988416 25987154 - MuDR3_OS 8604 0.3026 (885/2925) 1 Intact Os_TE_251524 Os_TE_251524 Chr6 25987150 25988416 + MuDR3_OS 8604 0.3158 (939/2973) 1 Intact Os_TE_251525 Os_TE_251502 Chr6 25977295 25977296 + RIREX_LTR 8828 0.0003 (1/2971) 0 * Os_TE_251501 Os_TE_251501 Chr6 25977291 25977290 - RIREX_LTR 8828 0.0003 (1/2993) 0 * Os_TE_251502 Os_TE_251486 Chr6 25970058 25970059 - SC-8_LTR 4951 0.0003 (1/2977) 0 * Os_TE_251485 Os_TE_251485 Chr6 25970054 25970053 + SC-8_LTR 4951 0.0003 (1/2981) 0 * Os_TE_251486 Os_TE_251475 Chr6 25963036 25963037 - SC-3_LTR 5748 0.0007 (2/2975) 0 * * Os_TE_251469 Chr6 25956577 25956578 + SC-8_LTR 4951 0.0003 (1/2994) 0 * Os_TE_251468 Os_TE_251468 Chr6 25956573 25956572 - SC-8_LTR 4951 0.0003 (1/2993) 0 * Os_TE_251469 Os_TE_251464 Chr6 25953620 25953621 - TRUNCATOR2_LTR 2904 0.0003 (1/2994) 0 * Os_TE_251463 Os_TE_251463 Chr6 25953616 25953615 + TRUNCATOR2_LTR 2904 0.0003 (1/2992) 0 * Os_TE_251464 Os_TE_251460 Chr6 25951608 25951370 - ORSgTEMT01601432 239 0.3184 (941/2955) 1 Intact Os_TE_251459 Os_TE_251459 Chr6 25951370 25951608 + ORSgTEMT01602181 239 0.3206 (949/2960) 1 Intact Os_TE_251460 Os_TE_251445 Chr6 25944595 25944596 - OSTE20 496 0.0007 (2/2977) 0 * * Os_TE_251413 Chr6 25918380 25918381 + SZ-4_LTR 5991 0.0003 (1/2921) 0 * Os_TE_251412 Os_TE_251412 Chr6 25918376 25918375 - SZ-4_LTR 5991 0.0003 (1/2932) 0 * Os_TE_251413 Os_TE_251378 Chr6 25903901 25903900 + ORSgTEMT01601591 242 0.0003 (1/2979) 0 * * Os_TE_251334 Chr6 25887584 25887585 + AMYLTP 383 0.0013 (4/2970) 0 * * Os_TE_251316 Chr6 25879348 25879349 + OSTONOR1_LTR 6440 0.0003 (1/2998) 0 * Os_TE_251315 Os_TE_251315 Chr6 25879344 25879343 - ORSiTERT00100062 5674 0.0003 (1/2998) 0 * Os_TE_251316 Os_TE_251285 Chr6 25873546 25873545 + ORSgTETNOOT01686 252 0.0003 (1/2965) 0 * * Os_TE_251267 Chr6 25864205 25864206 + MPING 430 0.0003 (1/2991) 0 * Os_TE_251266 Os_TE_251266 Chr6 25864203 25864202 - MPING 430 0.0003 (1/2977) 0 * Os_TE_251267 Os_TE_251263 Chr6 25862854 25862853 + AMYLTP 383 0.0017 (5/2864) 0 * * Os_TE_251252 Chr6 25856750 25856751 + ORSgTEMT00100272 356 0.0010 (1/988) 0 * * Os_TE_251244 Chr6 25853884 25853738 + TNR2A 152 0.3229 (959/2970) 1 Intact Os_TE_251243 Os_TE_251243 Chr6 25853738 25853882 - TNR2A 152 0.3222 (959/2976) 1 Intact Os_TE_251244 Os_TE_251236 Chr6 25850624 25841849 + GYPSY-A_LTR 8951 0.3258 (855/2624) 1 Intact Os_TE_251230 Os_TE_251230 Chr6 25841849 25850624 - SZ-40LTR 2465 0.3303 (879/2661) 1 Intact Os_TE_251236 Os_TE_251210 Chr6 25837722 25837723 + COPIO_LTR 11693 0.0017 (5/2980) 0 * Os_TE_251209 Os_TE_251209 Chr6 25837718 25837717 - COPIO_LTR 11693 0.0013 (4/2976) 0 * Os_TE_251210 Os_TE_251208 Chr6 25837639 25837638 + ORSgTEMT00700017 386 0.0003 (1/2979) 0 * Os_TE_251207 Os_TE_251207 Chr6 25837632 25837633 - ORSgTEMT00700002 381 0.0003 (1/2991) 0 * Os_TE_251208 Os_TE_251200 Chr6 25833779 25833780 - COPIA2-LTR_OS 6433 0.0003 (1/2975) 0 * * Os_TE_251198 Chr6 25833651 25833652 - SZ-55_LTR 10318 0.0003 (1/2987) 0 * Os_TE_251197 Os_TE_251197 Chr6 25833647 25833646 + SZ-55_LTR 10318 0.0007 (2/2988) 0 * Os_TE_251198 Os_TE_251192 Chr6 25830459 25830460 - AMYLTP 383 0.0253 (75/2959) 0 * * Os_TE_251190 Chr6 25830330 25830329 + MUDRN5_OS 374 0.0003 (1/2980) 0 * * Os_TE_251184 Chr6 25825802 25798735 + RETRO2_LTR 12874 0.2915 (869/2981) 1 Intact * Os_TE_251151 Chr6 25797384 25797385 - COPI2_LTR 4733 0.0003 (1/2992) 0 * Os_TE_251150 Os_TE_251150 Chr6 25797380 25797379 + COPI2_LTR 4733 0.0003 (1/2991) 0 * Os_TE_251151 Os_TE_251141 Chr6 25790347 25790346 - RETROSAT2LTR 12796 0.0004 (1/2836) 0 * * Os_TE_251138 Chr6 25784987 25784988 + SC-4_LTR 5218 0.0003 (1/2913) 0 * * Os_TE_251127 Chr6 25780461 25772701 - RIREX_LTR 8828 0.2941 (880/2992) 1 Intact Os_TE_251124 Os_TE_251124 Chr6 25772701 25780461 + RIREX_LTR 8828 0.2956 (886/2997) 1 Intact Os_TE_251127 Os_TE_251093 Chr6 25752590 25752591 + COPI2_LTR 4733 0.0007 (2/2993) 0 * Os_TE_251092 Os_TE_251092 Chr6 25752586 25752585 - COPI2_LTR 4733 0.0007 (2/2991) 0 * Os_TE_251093 Os_TE_251057 Chr6 25730951 25730952 + ORSiTERTOOT00296 5553 0.0003 (1/2994) 0 * Os_TE_251056 Os_TE_251056 Chr6 25730947 25730946 - SC-3_LTR 5748 0.0003 (1/2995) 0 * Os_TE_251057 Os_TE_251055 Chr6 25729897 25729898 + SC-8_LTR 4951 0.0003 (1/2984) 0 * Os_TE_251054 Os_TE_251054 Chr6 25729893 25729892 - SC-8_LTR 4951 0.0003 (1/2987) 0 * Os_TE_251055 Os_TE_251012 Chr6 25699491 25699490 - COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * * Os_TE_251011 Chr6 25698624 25698625 - ORSgTEMT01400027 210 0.0009 (1/1084) 0 * * Os_TE_251010 Chr6 25697611 25697612 - RIREX_LTR 8828 0.0003 (1/2961) 0 * Os_TE_251009 Os_TE_251009 Chr6 25697607 25697606 + RIREX_LTR 8828 0.0003 (1/2959) 0 * Os_TE_251010 Os_TE_251008 Chr6 25697137 25697138 + COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * Os_TE_251007 Os_TE_251007 Chr6 25697133 25697132 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_251008 Os_TE_250913 Chr6 25660601 25660602 - TRUNCATOR2_LTR 2904 0.0007 (2/2966) 0 * Os_TE_250912 Os_TE_250912 Chr6 25660597 25660596 + ORSiCMCM00100019 2717 0.0003 (1/2960) 0 * Os_TE_250913 Os_TE_250911 Chr6 25660536 25660537 - MPING 430 0.0040 (12/2977) 0 * * Os_TE_250884 Chr6 25653090 25653091 - RIREX_LTR 8828 0.0020 (6/2994) 0 * * Os_TE_250881 Chr6 25652017 25652016 - COPI2_LTR 4733 0.0003 (1/2981) 0 * * Os_TE_250879 Chr6 25651088 25651089 + COPIA2-LTR_OS 6433 0.0108 (32/2950) 0 * Os_TE_250878 Os_TE_250878 Chr6 25651084 25651083 - COPIA2-LTR_OS 6433 0.0125 (37/2956) 0 * Os_TE_250879 Os_TE_250851 Chr6 25641031 25641030 - TYPEM 227 0.0040 (12/2984) 0 * Os_TE_250850 Os_TE_250850 Chr6 25641026 25641027 - ORSgTEMT02400246 177 0.0037 (11/2985) 0 * Os_TE_250851 Os_TE_250834 Chr6 25634907 25634908 - COPIA2-LTR_OS 6433 0.0023 (7/2990) 0 * Os_TE_250833 Os_TE_250833 Chr6 25634903 25634902 + COPIA2-LTR_OS 6433 0.0020 (6/2992) 0 * Os_TE_250834 Os_TE_250831 Chr6 25633266 25633265 + ORSgTEMT01601591 242 0.0003 (1/2994) 0 * * Os_TE_250790 Chr6 25609987 25621530 + RETRO2_LTR 12874 0.4696 (139/296) 1 Intact * Os_TE_250763 Chr6 25594809 25594810 + TRUNCATOR 2918 0.0027 (8/2977) 0 * * Os_TE_250751 Chr6 25592177 25592178 + TRSA_OS 353 0.0003 (1/2956) 0 * * Os_TE_250689 Chr6 25564938 25564937 + ENSPM4_OS 11610 0.0020 (6/2973) 0 * * Os_TE_250619 Chr6 25529937 25529938 - DS-RICE2N 613 0.7849 (2343/2985) 0 * Os_TE_250618 Os_TE_250618 Chr6 25529930 25529929 + DS-RICE4N 715 0.7818 (2304/2947) 0 * Os_TE_250619 Os_TE_250609 Chr6 25528148 25528147 - ORSgTEMT00600304 361 0.0023 (7/2982) 0 * * Os_TE_250541 Chr6 25487940 25479345 + MuDR3_OS 8604 0.6366 (925/1453) 1 Intact Os_TE_250533 Os_TE_250533 Chr6 25479345 25487936 - MuDR3_OS 8604 0.8302 (2400/2891) 1 Intact Os_TE_250541 Os_TE_250524 Chr6 25472320 25472321 - TRUNCATOR2_LTR 2904 0.0007 (2/2998) 0 * Os_TE_250523 Os_TE_250523 Chr6 25472316 25472315 + ORSiCMCM00100019 2717 0.0007 (2/2998) 0 * Os_TE_250524 Os_TE_250512 Chr6 25471062 25471061 + STOWAWAY21_OS 243 0.0007 (2/2989) 0 * * Os_TE_250511 Chr6 25471033 25471034 + ORSiTERTOOT00027 10853 0.0067 (20/2977) 0 * Os_TE_250510 Os_TE_250510 Chr6 25471029 25471028 - RIRE3A_LTR 10580 0.0070 (21/2982) 0 * Os_TE_250511 Os_TE_250486 Chr6 25454951 25454952 - RIREX_LTR 8828 0.0003 (1/2988) 0 * Os_TE_250485 Os_TE_250485 Chr6 25454947 25454946 + RIREX_LTR 8828 0.0003 (1/2991) 0 * Os_TE_250486 Os_TE_250445 Chr6 25440387 25440388 - COPIA2-LTR_OS 6433 0.0003 (1/2980) 0 * Os_TE_250444 Os_TE_250444 Chr6 25440380 25440379 + COPIA2-LTR_OS 6433 0.0003 (1/2980) 0 * Os_TE_250445 Os_TE_250420 Chr6 25431442 25434252 - TRUNCATOR2_LTR 2904 0.8419 (2519/2992) 1 Intact * Os_TE_250401 Chr6 25424960 25424959 + OSTE33 1012 0.1630 (486/2981) 0 * Os_TE_250400 Os_TE_250400 Chr6 25424952 25424953 + OSTE33 1012 0.1701 (509/2992) 0 * Os_TE_250401 Os_TE_250355 Chr6 25391852 25400313 + SPMLIKE 10989 0.0912 (268/2939) 1 Intact * Os_TE_250344 Chr6 25388015 25388016 + TELIA 141 0.0003 (1/2977) 0 * Os_TE_250343 Os_TE_250343 Chr6 25388007 25388006 - TELIA 141 0.0003 (1/2982) 0 * Os_TE_250344 Os_TE_250331 Chr6 25384831 25371334 - ORSiTERT00200152 13997 0.8366 (2489/2975) 1 Intact * Os_TE_250265 Chr6 25351539 25351540 + RIREX_LTR 8828 0.0003 (1/2989) 0 * Os_TE_250264 Os_TE_250264 Chr6 25351535 25351534 - RIREX_LTR 8828 0.0003 (1/2986) 0 * Os_TE_250265 Os_TE_250257 Chr6 25350461 25350462 - SZ-55_LTR 10318 0.0027 (8/2983) 0 * Os_TE_250256 Os_TE_250256 Chr6 25350457 25350456 + SZ-55_LTR 10318 0.0027 (8/2985) 0 * Os_TE_250257 Os_TE_250253 Chr6 25349411 25349412 + RIREX_LTR 8828 0.0003 (1/2991) 0 * Os_TE_250252 Os_TE_250252 Chr6 25349407 25349406 - RIREX_LTR 8828 0.0003 (1/2988) 0 * Os_TE_250253 Os_TE_250183 Chr6 25315555 25315554 - ORSgTEMT00100799 337 0.0017 (5/2966) 0 * * Os_TE_250125 Chr6 25287668 25287669 - COPIA2-LTR_OS 6433 0.0127 (32/2522) 0 * * Os_TE_250093 Chr6 25278050 25278051 - RIRE2_LTR 11306 0.7427 (2217/2985) 0 * Os_TE_250092 Os_TE_250092 Chr6 25278046 25278045 - ORSgTERT00201216 11284 0.7470 (2235/2992) 0 * Os_TE_250093 Os_TE_250091 Chr6 25276956 25276957 - SZ-5LTR 1223 0.0013 (4/2993) 0 * Os_TE_250090 Os_TE_250090 Chr6 25276952 25276951 + COPIA1-LTR_OS 9292 0.0010 (3/2990) 0 * Os_TE_250091 Os_TE_250087 Chr6 25276818 25276819 + ORSiTERTOOT00028 8600 0.0003 (1/2987) 0 * Os_TE_250086 Os_TE_250086 Chr6 25276814 25276813 - TRUNCATOR2_LTR 2904 0.0003 (1/2990) 0 * Os_TE_250087 Os_TE_250024 Chr6 25248965 25248966 - MPING 430 0.0104 (31/2967) 0 * Os_TE_250023 Os_TE_250023 Chr6 25248963 25248962 + MPING 430 0.0104 (31/2970) 0 * Os_TE_250024 Os_TE_250021 Chr6 25248394 25248393 - STOWAWAY51_OS 246 0.0041 (12/2943) 0 * * Os_TE_250003 Chr6 25240846 25240847 - SC-3_LTR 5748 0.0003 (1/2991) 0 * Os_TE_250002 Os_TE_250002 Chr6 25240842 25240841 + ORSiTERTOOT00296 5553 0.0003 (1/2993) 0 * Os_TE_250003 Os_TE_249999 Chr6 25234362 25234363 + SC-8_LTR 4951 0.0003 (1/2995) 0 * Os_TE_249998 Os_TE_249998 Chr6 25234358 25234357 - SC-8_LTR 4951 0.0003 (1/2996) 0 * Os_TE_249999 Os_TE_249995 Chr6 25233223 25233224 - STOWAWAY51_OS 246 0.0003 (1/2988) 0 * * Os_TE_249994 Chr6 25233120 25233121 + NDNA1TNA_OS 334 0.0817 (244/2987) 0 * Os_TE_249993 Os_TE_249993 Chr6 25233118 25233117 - NDNA1TNA_OS 334 0.0803 (240/2988) 0 * Os_TE_249994 Os_TE_249986 Chr6 25228554 25228553 + AMYLTP 383 0.0003 (1/2962) 0 * * Os_TE_249967 Chr6 25215155 25215156 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_249966 Os_TE_249966 Chr6 25215151 25215150 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_249967 Os_TE_249957 Chr6 25211006 25211005 - ORSgTEMT02000041 194 0.0023 (7/2986) 0 * * Os_TE_249929 Chr6 25192701 25186514 - RETRO2_LTR 12874 0.6140 (1820/2964) 1 Intact Os_TE_249921 Os_TE_249921 Chr6 25186514 25192701 + ORSgTERTOOT00009 12852 0.5863 (1654/2821) 1 Intact Os_TE_249929 Os_TE_249917 Chr6 25185620 25185621 + TYPEU4 402 0.1429 (422/2954) 0 * Os_TE_249916 Os_TE_249916 Chr6 25185612 25185611 - TYPEU1 380 0.1438 (424/2948) 0 * Os_TE_249917 Os_TE_249915 Chr6 25185594 25185595 + ORSgTEMT01601122 212 0.0017 (5/2950) 0 * * Os_TE_249912 Chr6 25185060 25185061 - TYPEU1 380 0.0013 (4/2989) 0 * * Os_TE_249870 Chr6 25171471 25171470 + COPI2_LTR 4733 0.0003 (1/2978) 0 * * Os_TE_249869 Chr6 25170454 25170455 - SZ-55_LTR 10318 0.0007 (2/2947) 0 * Os_TE_249868 Os_TE_249868 Chr6 25170450 25170449 + SZ-55_LTR 10318 0.0007 (2/2950) 0 * Os_TE_249869 Os_TE_249845 Chr6 25166498 25166499 - ORSgTETN00200001 10994 0.1216 (338/2779) 0 * Os_TE_249844 Os_TE_249844 Chr6 25166496 25166495 + SPMLIKE 10989 0.1211 (334/2757) 0 * Os_TE_249845 Os_TE_249829 Chr6 25158147 25158148 - MDR2 6967 0.0003 (1/2959) 0 * * Os_TE_249811 Chr6 25149761 25149760 - ORSiTETNOOT00200 3563 0.0027 (6/2209) 0 * * Os_TE_249810 Chr6 25149442 25149441 - ORSgTEMT02000041 194 0.0030 (9/2991) 0 * * Os_TE_249807 Chr6 25145402 25145403 + ORSgTEMT00300122 416 0.0020 (6/2948) 0 * * Os_TE_249796 Chr6 25142223 25142222 + STOWAWAY51_OS 246 0.7015 (2075/2958) 0 * * Os_TE_249767 Chr6 25123694 25123695 - SC-3_LTR 5748 0.0003 (1/2987) 0 * Os_TE_249766 Os_TE_249766 Chr6 25123690 25123689 + ORSiTERTOOT00296 5553 0.0003 (1/2987) 0 * Os_TE_249767 Os_TE_249734 Chr6 25112346 25112347 + RETRO2_LTR 12874 0.2197 (655/2981) 0 * * Os_TE_249715 Chr6 25109072 25109073 - ORSgTEMT01601432 239 0.1800 (472/2622) 0 * * Os_TE_249710 Chr6 25108140 25108139 + ORSgTEMT01601122 212 0.1849 (521/2818) 0 * * Os_TE_249707 Chr6 25107334 25107335 - ORSgTEMT02400246 177 0.0786 (233/2963) 0 * * Os_TE_249704 Chr6 25106660 25106661 + MPING 430 0.0003 (1/2992) 0 * Os_TE_249703 Os_TE_249703 Chr6 25106658 25106657 - MPING 430 0.0003 (1/2988) 0 * Os_TE_249704 Os_TE_249701 Chr6 25106181 25106182 + COPIA2-LTR_OS 6433 0.0121 (36/2986) 0 * Os_TE_249700 Os_TE_249700 Chr6 25106177 25106176 - COPIA2-LTR_OS 6433 0.0121 (36/2979) 0 * Os_TE_249701 Os_TE_249697 Chr6 25105717 25105387 - CASTAWAY 364 0.7939 (2358/2970) 1 Intact * Os_TE_249652 Chr6 25099794 25099795 + RIREX_LTR 8828 0.0013 (4/2979) 0 * Os_TE_249651 Os_TE_249651 Chr6 25099790 25099789 - RIREX_LTR 8828 0.0007 (2/2979) 0 * Os_TE_249652 Os_TE_249641 Chr6 25096264 25096265 - COPIA2-LTR_OS 6433 0.0003 (1/2977) 0 * Os_TE_249640 Os_TE_249640 Chr6 25096260 25096259 + COPIA2-LTR_OS 6433 0.0003 (1/2977) 0 * Os_TE_249641 Os_TE_249610 Chr6 25086839 25086608 + ORSgTETNOOT01219 231 0.2865 (858/2995) 1 Intact * Os_TE_249607 Chr6 25084127 25084128 - RIREX_LTR 8828 0.0003 (1/2882) 0 * Os_TE_249606 Os_TE_249606 Chr6 25084123 25084122 + RIREX_LTR 8828 0.0003 (1/2908) 0 * Os_TE_249607 Os_TE_249567 Chr6 25069563 25069564 - RIREX_LTR 8828 0.0003 (1/2988) 0 * Os_TE_249566 Os_TE_249566 Chr6 25069559 25069558 + RIREX_LTR 8828 0.0003 (1/2991) 0 * Os_TE_249567 Os_TE_249552 Chr6 25066418 25066417 - STOWAWAY44_OS 240 0.0003 (1/2931) 0 * * Os_TE_249539 Chr6 25063037 25063036 + STOWAWAY51_OS 246 0.0010 (3/2973) 0 * Os_TE_249538 Os_TE_249538 Chr6 25063031 25063032 + ORSgTEMT01601591 242 0.0010 (3/2984) 0 * Os_TE_249539 Os_TE_249518 Chr6 25059222 25059223 - ORSgTEMT02400179 221 0.0069 (6/867) 0 * Os_TE_249517 Os_TE_249517 Chr6 25059221 25059220 - TYPEM 227 0.0045 (6/1322) -1 * Os_TE_249518 Os_TE_249511 Chr6 25054172 25054171 + ORSgTEMT01601934 207 0.0013 (4/2990) 0 * Os_TE_249510 Os_TE_249510 Chr6 25054169 25054170 + ORSgTEMT01601983 238 0.0017 (5/2994) 0 * Os_TE_249511 Os_TE_249503 Chr6 25047336 25047337 - F524 291 0.0004 (1/2491) 0 * * Os_TE_249456 Chr6 25036997 25036998 + RETROSAT3_LTR 11537 0.0007 (2/2947) 0 * Os_TE_249455 Os_TE_249455 Chr6 25036993 25036992 - Cassandra_OS-LTR 764 0.0007 (2/2930) 0 * Os_TE_249456 Os_TE_249440 Chr6 25033178 25033179 + ORSgTETNOOT01846 238 0.0020 (6/2979) 0 * Os_TE_249439 Os_TE_249439 Chr6 25033177 25033176 + ORSgTETNOOT00281 259 0.0020 (6/2981) 0 * Os_TE_249440 Os_TE_249427 Chr6 25021596 25021597 + MPING 430 0.0003 (1/2961) 0 * Os_TE_249426 Os_TE_249426 Chr6 25021594 25021593 - MPING 430 0.0003 (1/2993) 0 * Os_TE_249427 Os_TE_249415 Chr6 25012697 25012698 + AMYLTP 383 0.0399 (119/2982) 0 * Os_TE_249414 Os_TE_249414 Chr6 25012689 25012688 - AMYLTP 383 0.0406 (121/2982) 0 * Os_TE_249415 Os_TE_249370 Chr6 25005091 25005092 - RETRO2_LTR 12874 0.0174 (52/2991) 0 * Os_TE_249369 Os_TE_249369 Chr6 25005087 25005086 + RETRO2_LTR 12874 0.0193 (50/2597) 0 * Os_TE_249370 Os_TE_249365 Chr6 25002964 25002963 + OSTONOR1_LTR 6440 0.0024 (7/2962) 0 * * Os_TE_249364 Chr6 25002272 25002271 - ORSgTEMT02400179 221 0.0024 (7/2879) 0 * * Os_TE_249363 Chr6 25002268 25002269 + COPI1_LTR 4721 0.0007 (2/2979) 0 * Os_TE_249362 Os_TE_249362 Chr6 25002263 25002262 - SZ-25LTR 330 0.0007 (2/2874) 0 * Os_TE_249363 Os_TE_249335 Chr6 24998309 24997873 + CASGRANDA 465 0.2541 (754/2967) 1 Intact * Os_TE_249332 Chr6 24996343 24996342 + OLO24 345 0.0003 (1/2975) 0 * * Os_TE_249283 Chr6 24966897 24966898 + ORSiTERTOOT00296 5553 0.0003 (1/2993) 0 * * Os_TE_249275 Chr6 24961218 24961219 + QINNIU 528 0.0049 (14/2885) 0 * Os_TE_249274 Os_TE_249274 Chr6 24961211 24961210 - HATOS1 3488 0.0024 (7/2936) 0 * Os_TE_249275 Os_TE_249266 Chr6 24956165 24956164 + ORSgTEMT00100272 356 0.0008 (2/2476) 0 * * Os_TE_249263 Chr6 24955299 24955298 + SC-7_LTR 4431 0.0018 (5/2704) 0 * * Os_TE_249262 Chr6 24954461 24954462 + ORSiTERTOOT00333 4719 0.0028 (6/2167) 0 * * Os_TE_249260 Chr6 24953712 24953711 + OSTE15 1168 0.5558 (1498/2695) 0 * * Os_TE_249256 Chr6 24949214 24949215 + ORSiTERTOOT00034 791 0.0589 (176/2989) 0 * Os_TE_249255 Os_TE_249255 Chr6 24949210 24949209 - SZ-22_LTR 4403 0.0579 (173/2987) 0 * Os_TE_249256 Os_TE_249254 Chr6 24949020 24949021 - SZ-22_LTR 4403 0.0047 (14/2987) 0 * Os_TE_249253 Os_TE_249253 Chr6 24949016 24949015 + ORSiTERTOOT00226 792 0.0050 (15/2977) 0 * Os_TE_249254 Os_TE_249231 Chr6 24929652 24922153 - MERMITED 1572 0.7762 (1172/1510) 1 Intact * Os_TE_249228 Chr6 24928065 24924549 + GYPSY-A_LTR 8951 0.4181 (929/2222) 1 Solo_LTR * Os_TE_249220 Chr6 24922153 24929649 + MERMITED 1572 0.8953 (1171/1308) 1 Intact * Os_TE_249211 Chr6 24917147 24917148 + ORSgTEMT00501455 153 0.0384 (61/1587) 0 * * Os_TE_249210 Chr6 24916994 24916993 + RPO_OS 1983 0.0403 (64/1590) 0 * Os_TE_249209 Os_TE_249209 Chr6 24916993 24916994 - RPO_OS 1983 0.0402 (64/1594) 0 * Os_TE_249210 Os_TE_249194 Chr6 24910429 24910173 + STOWAWAY14_OS 258 0.6855 (1443/2105) 1 Intact * Os_TE_249182 Chr6 24906955 24906954 + MPING 430 0.0086 (13/1509) 0 * * Os_TE_249177 Chr6 24906232 24906231 + SZ-37_LTR 12001 0.0014 (2/1404) 0 * * Os_TE_249175 Chr6 24905383 24905384 + SZ-67LTR 1540 0.0014 (4/2824) 0 * Os_TE_249174 Os_TE_249174 Chr6 24905379 24905378 - SZ-67LTR 1540 0.0014 (4/2828) 0 * Os_TE_249175 Os_TE_249165 Chr6 24904664 24904910 - ORSgTEMT00501414 300 0.5249 (1509/2875) 1 Intact * Os_TE_249136 Chr6 24896548 24897022 + ORSgTETNOOT00908 242 0.3977 (1001/2517) 1 Intact * Os_TE_249133 Chr6 24894472 24894473 + STOWAWAY1_OS 149 0.0265 (66/2487) 0 * Os_TE_249132 Os_TE_249132 Chr6 24894471 24894470 + STOWAWAY1_OS 149 0.0263 (62/2358) 0 * Os_TE_249133 Os_TE_249113 Chr6 24885469 24885470 - RIRE2_LTR 11306 0.0107 (11/1030) 0 * Os_TE_249112 Os_TE_249112 Chr6 24885465 24885464 - ORSgTERT00201216 11284 0.0029 (3/1020) 0 * Os_TE_249113 Os_TE_249090 Chr6 24878103 24878104 + TRUNCATOR 2918 0.0032 (9/2778) 0 * * Os_TE_249089 Chr6 24877957 24877956 + TRUNCATOR 2918 0.0073 (10/1374) 0 * * Os_TE_249082 Chr6 24870882 24870883 - STOWAWAY50_OS 174 0.0637 (187/2936) 0 * * Os_TE_249080 Chr6 24869880 24869881 - SC-3_LTR 5748 0.0003 (1/2936) 0 * Os_TE_249079 Os_TE_249079 Chr6 24869876 24869875 + ORSiTERTOOT00296 5553 0.0003 (1/2935) 0 * Os_TE_249080 Os_TE_249078 Chr6 24869115 24869114 + ORSgTEMT00901844 250 0.0204 (61/2997) 0 * Os_TE_249077 Os_TE_249077 Chr6 24869111 24869112 - ORSgTEMT00900892 250 0.0204 (61/2995) 0 * Os_TE_249078 Os_TE_249075 Chr6 24865303 24865304 - MERMITE18B 1306 0.0441 (126/2860) 0 * Os_TE_249074 Os_TE_249074 Chr6 24865296 24865295 - MERMITE18B 1306 0.0601 (174/2894) 0 * Os_TE_249075 Os_TE_249071 Chr6 24865127 24865128 - AMYLTP 383 0.0030 (8/2683) 0 * * Os_TE_249047 Chr6 24861848 24861849 + RIREX_LTR 8828 0.0050 (15/2982) 0 * Os_TE_249046 Os_TE_249046 Chr6 24861844 24861843 - RIREX_LTR 8828 0.0047 (14/2985) 0 * Os_TE_249047 Os_TE_249045 Chr6 24861535 24861536 - COPIA2-LTR_OS 6433 0.0020 (6/2988) 0 * Os_TE_249044 Os_TE_249044 Chr6 24861531 24861530 + COPIA2-LTR_OS 6433 0.0020 (6/2990) 0 * Os_TE_249045 Os_TE_249040 Chr6 24849472 24860874 + ENSPM4_OS 11610 0.3280 (972/2963) 1 Intact * Os_TE_249034 Chr6 24847854 24847855 + STOWAWAY11_OS 292 0.0014 (4/2939) 0 * * Os_TE_249031 Chr6 24847221 24847222 - RIRE5-LTR_OS 6427 0.0024 (7/2977) 0 * Os_TE_249030 Os_TE_249030 Chr6 24847214 24847213 + RIRE5-LTR_OS 6427 0.0024 (7/2975) 0 * Os_TE_249031 Os_TE_249024 Chr6 24842489 24842490 + TOS17LTR 138 0.0970 (288/2969) 0 * Os_TE_249023 Os_TE_249023 Chr6 24842485 24842484 - TOS17LTR 138 0.1005 (299/2976) 0 * Os_TE_249024 Os_TE_248975 Chr6 24812638 24812639 - GYPSY-A_LTR 8951 0.0030 (9/2992) 0 * Os_TE_248974 Os_TE_248974 Chr6 24812634 24812633 - SZ-40LTR 2465 0.0027 (8/2990) 0 * Os_TE_248975 Os_TE_248958 Chr6 24803902 24803903 - ORSgTEMT00100921 319 0.0040 (12/2964) 0 * * Os_TE_248949 Chr6 24803015 24803014 - ORSgTEMT02400148 214 0.0048 (14/2915) 0 * Os_TE_248948 Os_TE_248948 Chr6 24803014 24803015 - TYPEM 227 0.0017 (5/2904) -1 * Os_TE_248949 Os_TE_248921 Chr6 24795290 24795291 + GYPSY1-LTR_OS 8900 0.0051 (15/2962) 0 * Os_TE_248920 Os_TE_248920 Chr6 24795286 24795285 - GYPSY1-LTR_OS 8900 0.0054 (16/2968) 0 * Os_TE_248921 Os_TE_248918 Chr6 24794506 24794507 + ORSgTEMT00901648 243 0.0044 (13/2984) 0 * * Os_TE_248917 Chr6 24794056 24794055 - ORSgTEMT00101174 225 0.0050 (15/2993) 0 * * Os_TE_248911 Chr6 24793461 24793460 - RIRE2_LTR 11306 0.0007 (2/2983) 0 * * Os_TE_248891 Chr6 24785150 24785149 - ORSgTEMT01400027 210 0.0003 (1/2945) 0 * * Os_TE_248880 Chr6 24783465 24783466 - CASTAWAY 364 0.0017 (5/2983) 0 * Os_TE_248879 Os_TE_248879 Chr6 24783462 24783461 - ORSgTEMT00600304 361 0.0017 (5/2978) 0 * Os_TE_248880 Os_TE_248878 Chr6 24782849 24782850 + MERMITEA 1710 0.0020 (6/2980) 0 * Os_TE_248877 Os_TE_248877 Chr6 24782841 24782840 - MERMITEA 1710 0.0020 (6/2972) 0 * Os_TE_248878 Os_TE_248875 Chr6 24781951 24781950 + COPIA2-LTR_OS 6433 0.0003 (1/2982) 0 * * Os_TE_248857 Chr6 24772217 24772218 + ORSiTERTOOT00226 792 0.0003 (1/2981) 0 * Os_TE_248856 Os_TE_248856 Chr6 24772213 24772212 - SZ-22_LTR 4403 0.0003 (1/2980) 0 * Os_TE_248857 Os_TE_248852 Chr6 24771060 24766473 + SZ-48LTR 3632 0.3045 (899/2952) 1 Intact * Os_TE_248828 Chr6 24760562 24750289 + SZ-55_LTR 10318 0.3103 (923/2975) 1 Intact * Os_TE_248825 Chr6 24749821 24749820 - TEMPINDAS 4259 0.0244 (72/2952) 0 * * Os_TE_248798 Chr6 24745234 24745233 + MPING 430 0.0003 (1/2986) 0 * * Os_TE_248795 Chr6 24742922 24742923 + SPMLIKE 10989 0.0274 (82/2990) 0 * Os_TE_248794 Os_TE_248794 Chr6 24742920 24742919 - ORSgTETN00200001 10994 0.0264 (79/2987) 0 * Os_TE_248795 Os_TE_248793 Chr6 24742340 24742341 - ORSiTETNOOT00134 607 0.0003 (1/2989) 0 * Os_TE_248792 Os_TE_248792 Chr6 24742333 24742332 + TWIF 586 0.0003 (1/2988) 0 * Os_TE_248793 Os_TE_248769 Chr6 24735013 24735014 + SZ-48LTR 3632 0.0707 (209/2955) 0 * Os_TE_248768 Os_TE_248768 Chr6 24735009 24735008 - SZ-48LTR 3632 0.0766 (228/2975) 0 * Os_TE_248769 Os_TE_248764 Chr6 24732709 24732439 + ORSgTEMT06100010 269 0.2931 (876/2989) 1 Intact Os_TE_248761 Os_TE_248761 Chr6 24732439 24732707 - ORSgTEMT06100010 269 0.2952 (882/2988) 1 Intact Os_TE_248764 Os_TE_248759 Chr6 24731633 24731632 + COPIA2-LTR_OS 6433 0.0003 (1/2979) 0 * * Os_TE_248721 Chr6 24722909 24722908 + ORSiTERTOOT00074 4935 0.0003 (1/2990) 0 * * Os_TE_248704 Chr6 24718992 24718993 - COPI2_LTR 4733 0.0003 (1/2986) 0 * Os_TE_248703 Os_TE_248703 Chr6 24718988 24718987 + COPI2_LTR 4733 0.0003 (1/2987) 0 * Os_TE_248704 Os_TE_248701 Chr6 24717526 24717527 + HARB-1_OS 5166 0.0211 (63/2992) 0 * Os_TE_248700 Os_TE_248700 Chr6 24717524 24717523 - HARB-1_OS 5166 0.0214 (64/2993) 0 * Os_TE_248701 Os_TE_248598 Chr6 24679307 24679308 + SPMLIKE 10989 0.0492 (147/2990) 0 * Os_TE_248597 Os_TE_248597 Chr6 24679305 24679304 - ORSgTETN00200001 10994 0.0485 (145/2989) 0 * Os_TE_248598 Os_TE_248584 Chr6 24674747 24674748 + SPMLIKE 10989 0.0741 (222/2994) 0 * * Os_TE_248582 Chr6 24674725 24674724 + CACTA-B 1103 0.0024 (7/2938) 0 * Os_TE_248581 Os_TE_248581 Chr6 24674721 24674722 + ORSgTETN00200005 1121 0.0023 (7/2998) 0 * Os_TE_248582 Os_TE_248499 Chr6 24641631 24641630 + AMYLTP 383 0.0020 (6/2999) 0 * * Os_TE_248472 Chr6 24630602 24630603 + COPI2_LTR 4733 0.1373 (410/2987) 0 * * Os_TE_248456 Chr6 24627939 24627940 - TRUNCATOR2_LTR 2904 0.0522 (156/2991) 0 * Os_TE_248455 Os_TE_248455 Chr6 24627935 24627934 - TRUNCATOR2_LTR 2904 0.0512 (153/2991) 0 * Os_TE_248456 Os_TE_248451 Chr6 24626696 24626695 + EnSpm-13_OS 11171 0.5610 (1678/2991) 0 * * Os_TE_248450 Chr6 24626529 24626530 - COPI2_LTR 4733 0.0003 (1/2997) 0 * Os_TE_248449 Os_TE_248449 Chr6 24626525 24626524 + COPI2_LTR 4733 0.0003 (1/2997) 0 * Os_TE_248450 Os_TE_248448 Chr6 24626388 24626389 - COPI2_LTR 4733 0.0007 (2/2991) 0 * Os_TE_248447 Os_TE_248447 Chr6 24626384 24626383 + COPI2_LTR 4733 0.0007 (2/2993) 0 * Os_TE_248448 Os_TE_248446 Chr6 24625573 24625574 + RIREX_LTR 8828 0.0013 (4/2992) 0 * Os_TE_248445 Os_TE_248445 Chr6 24625569 24625568 - RIREX_LTR 8828 0.0013 (4/2984) 0 * Os_TE_248446 Os_TE_248412 Chr6 24610876 24610877 + COPI2_LTR 4733 0.0017 (5/2983) 0 * Os_TE_248411 Os_TE_248411 Chr6 24610872 24610871 - COPI2_LTR 4733 0.0017 (5/2981) 0 * Os_TE_248412 Os_TE_248387 Chr6 24598543 24598544 + RETROSAT4_LTR 13504 0.0015 (4/2735) 0 * Os_TE_248386 Os_TE_248386 Chr6 24598539 24598538 - SZ-35LTR 3853 0.0017 (5/2988) 0 * Os_TE_248387 Os_TE_248377 Chr6 24597090 24597089 - ORSgTETN00200001 10994 0.0013 (4/2967) 0 * * Os_TE_248375 Chr6 24597005 24597004 + HARB-1_OS 5166 0.1747 (512/2931) 0 * * Os_TE_248333 Chr6 24584024 24584025 + COPIA2-LTR_OS 6433 0.0003 (1/2986) 0 * Os_TE_248332 Os_TE_248332 Chr6 24584020 24584019 - COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * Os_TE_248333 Os_TE_248306 Chr6 24575909 24575908 + SZ-27LIKE 1561 0.0007 (2/2989) 0 * * Os_TE_248268 Chr6 24552073 24545633 - COPIA2-LTR_OS 6433 0.2548 (762/2991) 1 Intact Os_TE_248266 Os_TE_248266 Chr6 24545633 24552073 + COPIA2-LTR_OS 6433 0.2493 (744/2984) 1 Intact Os_TE_248268 Os_TE_248234 Chr6 24530077 24530078 - INDITTO 263 0.0004 (1/2752) 0 * Os_TE_248233 Os_TE_248233 Chr6 24530075 24530074 + INDITTO 263 0.0004 (1/2790) 0 * Os_TE_248234 Os_TE_248232 Chr6 24530054 24530055 + INDITTO 263 0.0183 (50/2737) 0 * Os_TE_248231 Os_TE_248231 Chr6 24530052 24530051 - INDITTO 263 0.0175 (48/2740) 0 * Os_TE_248232 Os_TE_248208 Chr6 24520407 24520408 + ORSgTETNOOT00908 242 0.1185 (353/2980) 0 * Os_TE_248207 Os_TE_248207 Chr6 24520399 24520398 + ORSgTETNOOT01219 231 0.1202 (357/2971) 0 * Os_TE_248208 Os_TE_248182 Chr6 24505816 24505041 + MUDRN1_OS 764 0.2968 (888/2992) 1 Intact * Os_TE_248178 Chr6 24502567 24502568 - MPING 430 0.0040 (12/2995) 0 * Os_TE_248177 Os_TE_248177 Chr6 24502565 24502564 + MPING 430 0.0040 (12/2993) 0 * Os_TE_248178 Os_TE_248154 Chr6 24487772 24487773 + RIREX_LTR 8828 0.0031 (9/2942) 0 * * Os_TE_248098 Chr6 24466504 24466505 - COPI2_LTR 4733 0.5631 (1647/2925) 0 * Os_TE_248097 Os_TE_248097 Chr6 24466500 24466499 + COPI2_LTR 4733 0.5494 (1557/2834) 0 * Os_TE_248098 Os_TE_248096 Chr6 24466300 24466301 - MPING 430 0.0017 (5/2926) 0 * Os_TE_248095 Os_TE_248095 Chr6 24466298 24466297 + MPING 430 0.0017 (5/2978) 0 * Os_TE_248096 Os_TE_248091 Chr6 24464758 24464757 - ORSgTEMT00700002 381 0.0003 (1/2982) 0 * * Os_TE_248072 Chr6 24458998 24458997 - COPIA2-LTR_OS 6433 0.0003 (1/2982) 0 * * Os_TE_248051 Chr6 24447829 24447830 - COPI2_LTR 4733 0.0003 (1/2980) 0 * * Os_TE_248044 Chr6 24446129 24446130 + ORSiTERTOOT00074 4935 0.0024 (7/2941) 0 * Os_TE_248043 Os_TE_248043 Chr6 24446125 24446124 - ORSiTERTOOT00074 4935 0.0024 (7/2934) 0 * Os_TE_248044 Os_TE_248018 Chr6 24439524 24439523 + ORSgTEMT01602188 240 0.0019 (5/2701) 0 * * Os_TE_248004 Chr6 24433893 24433894 + ORSiTERTOOT00226 792 0.0017 (5/2983) 0 * Os_TE_248003 Os_TE_248003 Chr6 24433889 24433888 - SZ-22_LTR 4403 0.0017 (5/2984) 0 * Os_TE_248004 Os_TE_247920 Chr6 24394161 24394160 + MERMITEB 1610 0.0037 (10/2731) 0 * * Os_TE_247912 Chr6 24385020 24385021 + STOWAWAY41_OS 264 0.0020 (6/2969) 0 * * Os_TE_247902 Chr6 24383975 24383976 + RIREX_LTR 8828 0.0003 (1/2885) 0 * * Os_TE_247883 Chr6 24375295 24375296 - INDITTO 263 0.0003 (1/2994) 0 * * Os_TE_247877 Chr6 24373939 24373938 + COPIA2-LTR_OS 6433 0.0037 (11/2993) 0 * * Os_TE_247809 Chr6 24340687 24340688 - RETROSAT2LTRA 3112 0.0037 (11/2940) 0 * Os_TE_247808 Os_TE_247808 Chr6 24340683 24340682 + RETROSAT2LTRA 3112 0.0031 (9/2943) 0 * Os_TE_247809 Os_TE_247795 Chr6 24336014 24336015 - SC-8_LTR 4951 0.0003 (1/2977) 0 * Os_TE_247794 Os_TE_247794 Chr6 24336010 24336009 + SC-8_LTR 4951 0.0003 (1/2977) 0 * Os_TE_247795 Os_TE_247782 Chr6 24330170 24330169 - STOWAWAY51_OS 246 0.0003 (1/2986) 0 * Os_TE_247781 Os_TE_247781 Chr6 24330164 24330165 + STOWAWAY51_OS 246 0.0003 (1/2983) 0 * Os_TE_247782 Os_TE_247740 Chr6 24313861 24313862 - TREP215 239 0.4598 (1110/2414) 0 * * Os_TE_247734 Chr6 24312729 24312728 + STOWAWAY51_OS 246 0.0003 (1/2951) 0 * * Os_TE_247727 Chr6 24309586 24309585 - TESS 244 0.0003 (1/2983) 0 * * Os_TE_247725 Chr6 24308681 24308682 + ORSiTERTOOT00296 5553 0.0003 (1/2946) 0 * * Os_TE_247714 Chr6 24303050 24303051 + ORSgTETNOOT00908 242 0.0003 (1/2994) 0 * * Os_TE_247702 Chr6 24299273 24299274 - COPIA2-LTR_OS 6433 0.0049 (14/2872) 0 * Os_TE_247701 Os_TE_247701 Chr6 24299269 24299268 + COPIA2-LTR_OS 6433 0.0052 (15/2895) 0 * Os_TE_247702 Os_TE_247691 Chr6 24294138 24294139 + ORSiTERTOOT00296 5553 0.0007 (2/2996) 0 * Os_TE_247690 Os_TE_247690 Chr6 24294134 24294133 - SC-3_LTR 5748 0.0007 (2/2998) 0 * Os_TE_247691 Os_TE_247687 Chr6 24287911 24287912 + F569 228 0.0056 (16/2848) 0 * Os_TE_247686 Os_TE_247686 Chr6 24287909 24287908 - F569 228 0.0056 (16/2865) 0 * Os_TE_247687 Os_TE_247680 Chr6 24286110 24286111 + RIREX_LTR 8828 0.0903 (270/2991) 0 * * Os_TE_247666 Chr6 24283612 24283613 + RIREX_LTR 8828 0.0003 (1/2976) 0 * * Os_TE_247658 Chr6 24280171 24280172 - SC-8_LTR 4951 0.0003 (1/2969) 0 * Os_TE_247657 Os_TE_247657 Chr6 24280167 24280166 + SC-8_LTR 4951 0.0003 (1/2971) 0 * Os_TE_247658 Os_TE_247640 Chr6 24268927 24268928 - RIRE2_LTR 11306 0.0710 (212/2986) 0 * Os_TE_247639 Os_TE_247639 Chr6 24268924 24268923 - ORSgTERT00201216 11284 0.0727 (217/2984) 0 * Os_TE_247640 Os_TE_247601 Chr6 24251680 24251459 + ORSgTEMT02400014 229 0.4930 (1474/2990) 1 Intact Os_TE_247599 Os_TE_247599 Chr6 24251458 24251678 - ORSgTEMT02400179 221 0.4957 (1485/2996) 1 Intact Os_TE_247601 Os_TE_247571 Chr6 24236711 24236710 - STOWAWAY51_OS 246 0.0010 (3/2947) 0 * Os_TE_247570 Os_TE_247570 Chr6 24236705 24236706 + STOWAWAY51_OS 246 0.0014 (4/2950) 0 * Os_TE_247571 Os_TE_247530 Chr6 24220068 24220067 + STOWAWAY9_OS 235 0.4993 (1428/2860) 0 * * Os_TE_247523 Chr6 24214678 24215024 - NDNA2TNA_OS 346 0.3343 (994/2973) 1 Intact * Os_TE_247510 Chr6 24202758 24202759 + SC-8_LTR 4951 0.0003 (1/2986) 0 * Os_TE_247509 Os_TE_247509 Chr6 24202754 24202753 - SC-8_LTR 4951 0.0003 (1/2980) 0 * Os_TE_247510 Os_TE_247495 Chr6 24190006 24190007 - SC-3_LTR 5748 0.0013 (4/2989) 0 * Os_TE_247494 Os_TE_247494 Chr6 24190002 24190001 - SC-3_LTR 5748 0.0013 (4/2987) 0 * Os_TE_247495 Os_TE_247459 Chr6 24170929 24170930 - RIREX_LTR 8828 0.0148 (43/2903) 0 * * Os_TE_247457 Chr6 24170589 24162496 - RIREX_LTR 8828 0.3371 (986/2925) 1 Intact Os_TE_247455 Os_TE_247455 Chr6 24162496 24170589 + RIREX_LTR 8828 0.3322 (970/2920) 1 Intact Os_TE_247457 Os_TE_247443 Chr6 24148465 24148466 + EnSpm-13_OS 11171 0.0003 (1/2984) 0 * Os_TE_247442 Os_TE_247442 Chr6 24148463 24148462 - EnSpm-13_OS 11171 0.0003 (1/2986) 0 * Os_TE_247443 Os_TE_247434 Chr6 24144037 24144038 - OSR3_LTR 5201 0.0003 (1/2990) 0 * Os_TE_247433 Os_TE_247433 Chr6 24144033 24144032 + OSR3_LTR 5201 0.0003 (1/2985) 0 * Os_TE_247434 Os_TE_247431 Chr6 24143716 24143717 + ORSiTERTOOT00296 5553 0.0010 (3/2995) 0 * * Os_TE_247420 Chr6 24138717 24138716 + AMYLTP 383 0.0017 (5/2880) 0 * * Os_TE_247402 Chr6 24134083 24134084 + DS-RICE3N 525 0.4569 (1256/2749) 0 * * Os_TE_247399 Chr6 24133226 24133225 - STOWAWAY51_OS 246 0.0003 (1/2958) 0 * Os_TE_247398 Os_TE_247398 Chr6 24133220 24133221 + STOWAWAY51_OS 246 0.0003 (1/2975) 0 * Os_TE_247399 Os_TE_247385 Chr6 24124334 24124335 - ORSiTETNOOT00200 3563 0.1077 (320/2972) 0 * Os_TE_247384 Os_TE_247384 Chr6 24124327 24124326 + TWIF 586 0.1122 (334/2976) 0 * Os_TE_247385 Os_TE_247369 Chr6 24108925 24108926 - ORSgTEMT01701348 105 0.6916 (2068/2990) 0 * * Os_TE_247360 Chr6 24104164 24104163 + SC-8_LTR 4951 0.0003 (1/2996) 0 * * Os_TE_247314 Chr6 24089761 24089760 - GYPSY-A_LTR 8951 0.0068 (5/739) -1 * * Os_TE_247313 Chr6 24089610 24089611 - MuDR3_OS 8604 0.1256 (264/2102) 0 * Os_TE_247312 Os_TE_247312 Chr6 24089601 24089600 - MuDR3_OS 8604 0.1167 (243/2083) 0 * Os_TE_247313 Os_TE_247254 Chr6 24074833 24074834 - COPIA2-LTR_OS 6433 0.0017 (5/2878) 0 * Os_TE_247253 Os_TE_247253 Chr6 24074829 24074828 + COPIA2-LTR_OS 6433 0.0014 (4/2902) 0 * Os_TE_247254 Os_TE_247239 Chr6 24067441 24067442 + RIREX_LTR 8828 0.0700 (209/2985) 0 * * Os_TE_247193 Chr6 24048133 24048134 - ORSgTEMT00600085 364 0.0003 (1/2952) 0 * * Os_TE_247134 Chr6 24025565 24025564 - TNR2A 152 0.0576 (170/2951) 0 * * Os_TE_247132 Chr6 24024463 24024464 + TYPEU1 380 0.5315 (1569/2952) 0 * Os_TE_247131 Os_TE_247131 Chr6 24024454 24024453 - TYPEU1 380 0.5114 (1462/2859) 0 * Os_TE_247132 Os_TE_247130 Chr6 24023889 24023890 + ORSgTEMT01601591 242 0.0003 (1/2978) 0 * * Os_TE_247125 Chr6 24015969 24015970 - MuDR3_OS 8604 0.0542 (159/2931) 0 * Os_TE_247124 Os_TE_247124 Chr6 24015960 24015959 - MuDR3_OS 8604 0.0519 (152/2926) 0 * Os_TE_247125 Os_TE_247120 Chr6 24014808 24014809 + COPIA2-LTR_OS 6433 0.0003 (1/2986) 0 * Os_TE_247119 Os_TE_247119 Chr6 24014804 24014803 - COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_247120 Os_TE_247117 Chr6 24014284 24014283 + ORSgTEMT01601122 212 0.0003 (1/2915) 0 * * Os_TE_247103 Chr6 24011905 24011906 - RETRO2_LTR 12874 0.0518 (154/2973) 0 * Os_TE_247102 Os_TE_247102 Chr6 24011901 24011900 + ORSgTERTOOT00009 12852 0.0543 (162/2985) 0 * Os_TE_247103 Os_TE_247068 Chr6 23998448 23995583 + RIRE3_LTR 12054 0.4503 (1278/2838) 1 Solo_LTR * Os_TE_247000 Chr6 23966689 23966690 - RIREX_LTR 8828 0.0019 (3/1564) 0 * Os_TE_246999 Os_TE_246999 Chr6 23966685 23966684 + RIREX_LTR 8828 0.0019 (3/1561) 0 * Os_TE_247000 Os_TE_246948 Chr6 23948231 23948232 + F770 284 0.0874 (148/1694) 0 * * Os_TE_246940 Chr6 23946137 23946138 + OsSN3 183 0.0003 (1/2983) 0 * * Os_TE_246927 Chr6 23943459 23943460 + QINNIU 528 0.0010 (3/2996) 0 * Os_TE_246926 Os_TE_246926 Chr6 23943452 23943451 - HATOS1 3488 0.0010 (3/2996) 0 * Os_TE_246927 Os_TE_246923 Chr6 23940744 23940745 + RETRO2A_LTR 12895 0.0010 (3/2979) 0 * Os_TE_246922 Os_TE_246922 Chr6 23940740 23940739 - RETRO1_LTR 8314 0.0010 (3/2984) 0 * Os_TE_246923 Os_TE_246912 Chr6 23934585 23934586 + ORSgTETNOOT00908 242 0.0010 (3/2897) 0 * * Os_TE_246892 Chr6 23926279 23926278 - TYPEM 227 0.0473 (139/2936) 0 * Os_TE_246891 Os_TE_246891 Chr6 23926278 23926279 - ORSgTEMT02400246 177 0.0475 (139/2926) 0 * Os_TE_246892 Os_TE_246878 Chr6 23924690 23924689 + COPI2_LTR 4733 0.0007 (2/2997) 0 * * Os_TE_246802 Chr6 23902822 23902823 + ORSiTERTOOT00296 5553 0.0007 (2/2988) 0 * Os_TE_246801 Os_TE_246801 Chr6 23902818 23902817 - SC-3_LTR 5748 0.0007 (2/2988) 0 * Os_TE_246802 Os_TE_246799 Chr6 23900504 23900505 - MPING 430 0.0003 (1/2994) 0 * Os_TE_246798 Os_TE_246798 Chr6 23900502 23900501 + MPING 430 0.0003 (1/2993) 0 * Os_TE_246799 Os_TE_246789 Chr6 23893158 23893159 + OSR3_LTR 5201 0.0255 (76/2984) 0 * * Os_TE_246787 Chr6 23890102 23890101 - MPING 430 0.0004 (1/2704) 0 * * Os_TE_246785 Chr6 23889392 23889391 + STOWAWAY51_OS 246 0.0003 (1/2968) 0 * Os_TE_246784 Os_TE_246784 Chr6 23889386 23889387 - STOWAWAY51_OS 246 0.0007 (2/2948) 0 * Os_TE_246785 Os_TE_246783 Chr6 23889340 23889341 + OSTE33 1012 0.0751 (223/2968) 0 * Os_TE_246782 Os_TE_246782 Chr6 23889332 23889331 + OSTE33 1012 0.0678 (201/2964) 0 * Os_TE_246783 Os_TE_246769 Chr6 23888596 23888831 + ORSgTETNOOT00908 242 0.1550 (450/2904) 1 Intact * Os_TE_246767 Chr6 23888546 23888545 + ORSgTEMT01601591 242 0.0008 (2/2631) 0 * * Os_TE_246761 Chr6 23887061 23887062 - COPI2_LTR 4733 0.0011 (3/2854) 0 * * Os_TE_246749 Chr6 23881056 23880821 + STOWAWAY21_OS 243 0.3137 (903/2879) 1 Intact Os_TE_246748 Os_TE_246748 Chr6 23880819 23881030 + ORSgTEMT01601122 212 0.2895 (794/2743) 1 Intact Os_TE_246749 Os_TE_246742 Chr6 23879853 23879854 - RIREX_LTR 8828 0.0004 (1/2721) 0 * Os_TE_246741 Os_TE_246741 Chr6 23879849 23879848 + RIREX_LTR 8828 0.0004 (1/2839) 0 * Os_TE_246742 Os_TE_246732 Chr6 23869248 23869249 - CRM-LTR_OS 7749 0.0010 (3/2975) 0 * * Os_TE_246724 Chr6 23866764 23866765 + RIREX_LTR 8828 0.0003 (1/2984) 0 * Os_TE_246723 Os_TE_246723 Chr6 23866760 23866759 - RIREX_LTR 8828 0.0003 (1/2980) 0 * Os_TE_246724 Os_TE_246711 Chr6 23864938 23864937 + CACTA-B 1103 0.0034 (10/2951) 0 * Os_TE_246710 Os_TE_246710 Chr6 23864937 23864938 - CACTA-H 1152 0.0034 (10/2943) 0 * Os_TE_246711 Os_TE_246703 Chr6 23860180 23860181 - COPIA2-LTR_OS 6433 0.0003 (1/2874) 0 * Os_TE_246702 Os_TE_246702 Chr6 23860176 23860175 + COPIA2-LTR_OS 6433 0.0004 (1/2725) 0 * Os_TE_246703 Os_TE_246678 Chr6 23851637 23851638 - RETROSAT2LTR 12796 0.0963 (285/2961) 0 * * Os_TE_246652 Chr6 23842401 23842402 - ORSgTEMT02400179 221 0.0047 (14/2989) 0 * Os_TE_246651 Os_TE_246651 Chr6 23842400 23842399 - TYPEM 227 0.0047 (14/2989) 0 * Os_TE_246652 Os_TE_246650 Chr6 23842129 23842128 - OSLINE1-2 7128 0.0017 (5/2984) 0 * * Os_TE_246641 Chr6 23841141 23841142 + RETRO2A_LTR 12895 0.3032 (876/2889) 0 * Os_TE_246640 Os_TE_246640 Chr6 23841137 23841136 - RETRO1_LTR 8314 0.3075 (877/2852) 0 * Os_TE_246641 Os_TE_246633 Chr6 23840328 23839839 + OSTE20 496 0.7787 (2065/2652) 1 Intact Os_TE_246632 Os_TE_246632 Chr6 23839839 23840325 + OSTE20 496 0.7714 (1991/2581) 1 Intact Os_TE_246633 Os_TE_246616 Chr6 23837656 23837657 - TYPEM 227 0.0010 (3/2909) 0 * Os_TE_246615 Os_TE_246615 Chr6 23837655 23837654 - ORSgTEMT02400179 221 0.0014 (4/2903) 0 * Os_TE_246616 Os_TE_246612 Chr6 23837506 23837505 + ORSgTEMT01601591 242 0.0003 (1/2933) 0 * * Os_TE_246568 Chr6 23812315 23812316 + OSTE15 1168 0.0007 (2/2988) 0 * Os_TE_246567 Os_TE_246567 Chr6 23812311 23812310 + OSMU5 4881 0.0007 (2/2989) 0 * Os_TE_246568 Os_TE_246563 Chr6 23811117 23811118 + AMYLTP 383 0.0007 (2/2997) 0 * Os_TE_246562 Os_TE_246562 Chr6 23811109 23811108 - AMYLTP 383 0.0007 (2/2997) 0 * Os_TE_246563 Os_TE_246492 Chr6 23779354 23779355 - COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_246491 Os_TE_246491 Chr6 23779350 23779349 + COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_246492 Os_TE_246477 Chr6 23773450 23773451 - COPIA2-LTR_OS 6433 0.0003 (1/2972) 0 * * Os_TE_246473 Chr6 23772676 23772677 + COPIA2-LTR_OS 6433 0.0003 (1/2978) 0 * * Os_TE_246471 Chr6 23772621 23772622 + RIREX_LTR 8828 0.0017 (5/2976) 0 * Os_TE_246470 Os_TE_246470 Chr6 23772617 23772616 - RIREX_LTR 8828 0.0017 (5/2974) 0 * Os_TE_246471 Os_TE_246447 Chr6 23767803 23767804 - COPIA2-LTR_OS 6433 0.0010 (3/2981) 0 * Os_TE_246446 Os_TE_246446 Chr6 23767799 23767798 + COPIA2-LTR_OS 6433 0.0010 (3/2976) 0 * Os_TE_246447 Os_TE_246415 Chr6 23736939 23736940 - SC-3_LTR 5748 0.0003 (1/2993) 0 * Os_TE_246414 Os_TE_246414 Chr6 23736935 23736934 + ORSiTERTOOT00296 5553 0.0003 (1/2998) 0 * Os_TE_246415 Os_TE_246413 Chr6 23736537 23736538 - MPING 430 0.0003 (1/2996) 0 * Os_TE_246412 Os_TE_246412 Chr6 23736535 23736534 + MPING 430 0.0003 (1/2993) 0 * Os_TE_246413 Os_TE_246399 Chr6 23734515 23734516 + MPING 430 0.0034 (10/2961) 0 * Os_TE_246398 Os_TE_246398 Chr6 23734513 23734512 - MPING 430 0.0034 (10/2960) 0 * Os_TE_246399 Os_TE_246373 Chr6 23719164 23719165 - RETROFIT6_LTR 4799 0.0260 (78/2996) 0 * Os_TE_246372 Os_TE_246372 Chr6 23719160 23719159 + RETROFIT6_LTR 4799 0.0267 (80/2998) 0 * Os_TE_246373 Os_TE_246371 Chr6 23719070 23719071 - MPING 430 0.0003 (1/2993) 0 * Os_TE_246370 Os_TE_246370 Chr6 23719068 23719067 + MPING 430 0.0003 (1/2994) 0 * Os_TE_246371 Os_TE_246347 Chr6 23710518 23710519 + MPING 430 0.0102 (29/2848) 0 * * Os_TE_246338 Chr6 23707256 23707257 + ORSgTEMT01601122 212 0.0010 (3/2996) 0 * * Os_TE_246334 Chr6 23704434 23704435 + ORSiTERTOOT00226 792 0.0007 (2/2857) 0 * Os_TE_246333 Os_TE_246333 Chr6 23704430 23704429 - SZ-22_LTR 4403 0.0010 (3/2858) 0 * Os_TE_246334 Os_TE_246318 Chr6 23694668 23694669 + COPI2_LTR 4733 0.0003 (1/2982) 0 * Os_TE_246317 Os_TE_246317 Chr6 23694664 23694663 - COPI2_LTR 4733 0.0003 (1/2981) 0 * Os_TE_246318 Os_TE_246306 Chr6 23688999 23689000 - OSTE24 683 0.0007 (2/2993) 0 * * Os_TE_246274 Chr6 23674096 23674095 + OSTONOR1_LTR 6440 0.0015 (2/1338) 0 * * Os_TE_246273 Chr6 23674087 23674088 - COPIA2-LTR_OS 6433 0.0325 (45/1383) 0 * Os_TE_246272 Os_TE_246272 Chr6 23674083 23674082 + COPIA2-LTR_OS 6433 0.0337 (45/1337) 0 * Os_TE_246273 Os_TE_246250 Chr6 23668231 23662763 - ORSiTERTOOT00362 5469 0.4717 (1358/2879) 1 Intact Os_TE_246246 Os_TE_246246 Chr6 23662763 23668231 + ORSiTERTOOT00362 5469 0.4500 (1342/2982) 1 Intact Os_TE_246250 Os_TE_246244 Chr6 23661986 23657445 - LINE-6_OS 4886 0.4422 (1308/2958) 1 Intact * Os_TE_246239 Chr6 23655256 23655257 + RIREX_LTR 8828 0.0003 (1/2924) 0 * Os_TE_246238 Os_TE_246238 Chr6 23655252 23655251 - RIREX_LTR 8828 0.0003 (1/2973) 0 * Os_TE_246239 Os_TE_246237 Chr6 23655099 23655098 - ORSgTERT00201216 11284 0.0294 (87/2964) 0 * * Os_TE_246236 Chr6 23655096 23655097 + ORSgTEMT01701591 154 0.0027 (8/2974) 0 * * Os_TE_246235 Chr6 23654456 23654455 + NDNA1TNA_OS 334 0.5628 (1667/2962) 0 * Os_TE_246234 Os_TE_246234 Chr6 23654441 23654442 + ORSgTEMT00101674 340 0.5575 (1663/2983) 0 * Os_TE_246235 Os_TE_246232 Chr6 23653436 23653435 + MERMITE18E 1528 0.5344 (1470/2751) 0 * * Os_TE_246228 Chr6 23652621 23652377 - STOWAWAY51_OS 246 0.4383 (1279/2918) 1 Intact * Os_TE_246223 Chr6 23652347 23652348 - MERMITED 1572 0.5672 (1684/2969) 0 * * Os_TE_246215 Chr6 23650084 23650083 + ORSgTEMT00900319 250 0.5660 (1685/2977) 0 * * Os_TE_246166 Chr6 23628625 23628626 - GYPSY-A_LTR 8951 0.0007 (1/1353) 0 * Os_TE_246165 Os_TE_246165 Chr6 23628621 23628620 + SZ-40LTR 2465 0.0007 (1/1362) 0 * Os_TE_246166 Os_TE_246127 Chr6 23607770 23607769 + ORSgTEMT00101116 321 0.3749 (1073/2862) 0 * * Os_TE_246119 Chr6 23604264 23603856 + ORSgTETNOOT01128 258 0.4491 (935/2082) 1 Intact * Os_TE_246112 Chr6 23602983 23601660 + CACTA-D 1038 0.3749 (1106/2950) 1 Intact Os_TE_246110 Os_TE_246110 Chr6 23601660 23602674 - CACTA-H 1152 0.3751 (1111/2962) 1 Intact Os_TE_246112 Os_TE_246098 Chr6 23596672 23596361 + ORSgTEMT00101588 319 0.0471 (131/2782) 1 Intact Os_TE_246094 Os_TE_246094 Chr6 23596329 23596671 + ORSgTEMT00500260 149 0.0516 (139/2694) 1 Intact Os_TE_246098 Os_TE_246065 Chr6 23550736 23550737 - F569 228 0.0076 (1/132) 0 * Os_TE_246064 Os_TE_246064 Chr6 23550734 23550733 + F569 228 0.0417 (6/144) 0 * Os_TE_246065 Os_TE_246053 Chr6 23540186 23540187 - MPING 430 0.0047 (14/2985) 0 * Os_TE_246052 Os_TE_246052 Chr6 23540184 23540183 + MPING 430 0.0047 (14/2990) 0 * Os_TE_246053 Os_TE_246050 Chr6 23540062 23540061 - MPING 430 0.0003 (1/2987) 0 * * Os_TE_246044 Chr6 23538620 23538621 - MPING 430 0.0347 (104/2998) 0 * Os_TE_246043 Os_TE_246043 Chr6 23538618 23538617 + MPING 430 0.0350 (105/2999) 0 * Os_TE_246044 Os_TE_246032 Chr6 23536663 23536664 + MPING 430 0.0003 (1/2984) 0 * Os_TE_246031 Os_TE_246031 Chr6 23536661 23536660 - MPING 430 0.0003 (1/2979) 0 * Os_TE_246032 Os_TE_246010 Chr6 23526981 23521641 - MPING 430 0.0184 (54/2931) 1 Intact Os_TE_246009 Os_TE_246009 Chr6 23521641 23526981 + MPING 430 0.0195 (53/2719) 1 Intact Os_TE_246010 Os_TE_245984 Chr6 23517510 23517511 - COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_245983 Os_TE_245983 Chr6 23517506 23517505 + COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_245984 Os_TE_245981 Chr6 23516677 23516678 + ENSPM6_OS 9815 0.2413 (710/2942) 0 * Os_TE_245980 Os_TE_245980 Chr6 23516675 23516674 - ENSPM5_OS 9581 0.2223 (642/2888) 0 * Os_TE_245981 Os_TE_245978 Chr6 23516223 23516222 + ENSPM4_OS 11610 0.3706 (1100/2968) 0 * Os_TE_245977 Os_TE_245977 Chr6 23516222 23516223 - ENSPM4_OS 11610 0.3812 (1142/2996) 0 * Os_TE_245978 Os_TE_245958 Chr6 23502860 23502859 + ORSgTEMT00300093 396 0.0003 (1/2986) 0 * * Os_TE_245921 Chr6 23497110 23497111 - RETRO1_LTR 8314 0.2526 (744/2945) 0 * Os_TE_245920 Os_TE_245920 Chr6 23497106 23497105 + RETRO2_LTR 12874 0.2487 (732/2943) 0 * Os_TE_245921 Os_TE_245912 Chr6 23495731 23495730 + RIREX_LTR 8828 0.0010 (3/2980) 0 * * Os_TE_245885 Chr6 23489781 23489782 - RIRE2_LTR 11306 0.2282 (646/2831) 0 * Os_TE_245884 Os_TE_245884 Chr6 23489777 23489776 - ORSgTERT00201216 11284 0.2308 (666/2885) 0 * Os_TE_245885 Os_TE_245874 Chr6 23487416 23477414 + rn_179-105_LTR 4837 0.0426 (127/2983) 1 Intact Os_TE_245870 Os_TE_245870 Chr6 23477414 23482120 - rn_179-105_LTR 4837 0.0429 (128/2984) 1 Intact Os_TE_245874 Os_TE_245867 Chr6 23476599 23476600 + SETARIA2 1142 0.0248 (74/2978) 0 * Os_TE_245866 Os_TE_245866 Chr6 23476594 23476593 + SETARIA2 1142 0.0228 (68/2980) 0 * Os_TE_245867 Os_TE_245865 Chr6 23476300 23476299 - EnSpm-16_OS 13336 0.0003 (1/2994) 0 * * Os_TE_245862 Chr6 23475289 23475288 + ORSgTEMT02400245 225 0.3280 (982/2994) 0 * * Os_TE_245849 Chr6 23465809 23465808 - ORSgTETNOOT02565 240 0.2972 (871/2931) 0 * * Os_TE_245848 Chr6 23465759 23465760 - INDITTO 263 0.0124 (36/2905) 0 * * Os_TE_245846 Chr6 23464926 23464925 - ORSgTEMT00901723 248 0.3001 (810/2699) 0 * * Os_TE_245845 Chr6 23464589 23464588 - ORSgTEMT00100242 351 0.0404 (120/2972) 0 * Os_TE_245844 Os_TE_245844 Chr6 23464583 23464584 + ORSgTEMT00101674 340 0.0442 (131/2967) 0 * Os_TE_245845 Os_TE_245843 Chr6 23464052 23464051 - ORSgTEMT00500753 148 0.3035 (894/2946) 0 * * Os_TE_245818 Chr6 23460192 23460191 - MuDR4_OS 7610 0.0027 (8/2968) 0 * * Os_TE_245812 Chr6 23458452 23458453 - MPING 430 0.0003 (1/2994) 0 * * Os_TE_245795 Chr6 23453983 23455871 - ENSPM5_OS 9581 0.3415 (1022/2993) 1 Intact * Os_TE_245792 Chr6 23452059 23451829 + ORSgTEMT01601525 239 0.7052 (2096/2972) 1 Intact Os_TE_245789 Os_TE_245789 Chr6 23451822 23452038 + ORSgTEMT01600011 239 0.7075 (2109/2981) 1 Intact Os_TE_245792 Os_TE_245781 Chr6 23446134 23446133 - OSTE9 421 0.2947 (874/2966) 0 * * Os_TE_245780 Chr6 23445705 23445559 - UNIQUE 158 0.7095 (2118/2985) 1 Intact Os_TE_245778 Os_TE_245778 Chr6 23445555 23445686 + ORSiTEMT03300001 145 0.7092 (2124/2995) 1 Intact Os_TE_245780 Os_TE_245763 Chr6 23441163 23441164 - ORSgTEMT00502287 149 0.0003 (1/2950) 0 * * Os_TE_245746 Chr6 23436168 23436023 + ECSR 154 0.0432 (129/2984) 1 Intact * Os_TE_245742 Chr6 23430176 23420755 + OSTONOR1_LTR 6440 0.0488 (133/2725) 1 Intact Os_TE_245729 Os_TE_245729 Chr6 23420755 23430176 - ORSiTERT00100062 5674 0.0437 (130/2972) 1 Intact Os_TE_245742 Os_TE_245716 Chr6 23418541 23418542 + INDITTO 263 0.0007 (2/2961) 0 * * Os_TE_245712 Chr6 23418232 23418231 - ORSgTEMT01800052 396 0.0017 (5/2962) 0 * Os_TE_245711 Os_TE_245711 Chr6 23418226 23418227 + ORSgTEMT01800100 438 0.0017 (5/2944) 0 * Os_TE_245712 Os_TE_245704 Chr6 23416643 23416642 - ORSgTEMT02400246 177 0.2804 (836/2981) 0 * * Os_TE_245696 Chr6 23414228 23412398 - ORSiCMCM00100013 9728 0.0502 (139/2767) 1 Intact * Os_TE_245685 Chr6 23410792 23410793 + AMYLTP 383 0.0017 (5/2994) 0 * Os_TE_245684 Os_TE_245684 Chr6 23410784 23410783 - AMYLTP 383 0.0017 (5/2898) 0 * Os_TE_245685 Os_TE_245683 Chr6 23410489 23410488 - SZ-35LTR 3853 0.0027 (8/2997) 0 * * Os_TE_245672 Chr6 23400462 23400463 - AMYLTP 383 0.4091 (1222/2987) 0 * Os_TE_245671 Os_TE_245671 Chr6 23400454 23400453 + AMYLTP 383 0.4070 (1213/2980) 0 * Os_TE_245672 Os_TE_245665 Chr6 23398955 23398956 - STOWAWAY11_OS 292 0.2989 (888/2971) 0 * * Os_TE_245661 Chr6 23398857 23398856 - ORSgTEMT02900061 318 0.6743 (1998/2963) 0 * * Os_TE_245658 Chr6 23398838 23398547 - STOWAWAY11_OS 292 0.1289 (132/1024) 1 Intact * Os_TE_245653 Chr6 23398135 23398136 + STOWAWAY11_OS 292 0.3017 (869/2880) 0 * Os_TE_245652 Os_TE_245652 Chr6 23398134 23398133 - STOWAWAY11_OS 292 0.3029 (882/2912) 0 * Os_TE_245653 Os_TE_245647 Chr6 23396720 23396846 - ORSgTEMT00501987 127 0.3550 (1032/2907) 1 Intact * Os_TE_245646 Chr6 23396524 23396525 + SPMLIKE 10989 0.3906 (1134/2903) 0 * Os_TE_245645 Os_TE_245645 Chr6 23396522 23396521 - ORSgTETN00200001 10994 0.4026 (1182/2936) 0 * Os_TE_245646 Os_TE_245644 Chr6 23395949 23395948 - ORSgTEMT02400179 221 0.0643 (191/2971) 0 * Os_TE_245643 Os_TE_245643 Chr6 23395943 23395944 + ORSgTEMT02400041 225 0.0652 (191/2931) 0 * Os_TE_245644 Os_TE_245636 Chr6 23395224 23395519 + STOWAWAY11_OS 292 0.3409 (1001/2936) 1 Intact * Os_TE_245634 Chr6 23395149 23395148 + ORSgTEMT00500201 140 0.6694 (1974/2949) 0 * Os_TE_245633 Os_TE_245633 Chr6 23395148 23395149 - ORSgTETNOOT01930 140 0.6764 (2002/2960) 0 * Os_TE_245634 Os_TE_245631 Chr6 23394873 23394874 - STOWAWAY11_OS 292 0.2956 (868/2936) 0 * Os_TE_245630 Os_TE_245630 Chr6 23394872 23394871 + STOWAWAY11_OS 292 0.2924 (853/2917) 0 * Os_TE_245631 Os_TE_245624 Chr6 23391330 23391331 - SZLTR 1249 0.0003 (1/2935) 0 * * Os_TE_245618 Chr6 23389238 23390474 + MERMITE-18 1263 0.0433 (128/2955) 1 Intact * Os_TE_245612 Chr6 23378598 23378599 + ORSgTEMT00500475 149 0.0133 (2/150) 0 * * Os_TE_245611 Chr6 23378189 23377946 + STOWAWAY51_OS 246 0.0449 (134/2983) 1 Intact Os_TE_245610 Os_TE_245610 Chr6 23377946 23378186 - STOWAWAY51_OS 246 0.0440 (131/2980) 1 Intact Os_TE_245611 Os_TE_245598 Chr6 23375716 23375717 - ORSgTERT00201216 11284 0.2968 (888/2992) 0 * Os_TE_245597 Os_TE_245597 Chr6 23375712 23375711 - RIRE2_LTR 11306 0.2897 (863/2979) 0 * Os_TE_245598 Os_TE_245595 Chr6 23371801 23371800 - ORSgTETNOOT02245 144 0.0007 (2/2981) 0 * Os_TE_245594 Os_TE_245594 Chr6 23371800 23371801 + ORSgTEMT00500201 140 0.0007 (2/2980) 0 * Os_TE_245595 Os_TE_245577 Chr6 23366779 23366780 + HARB-1_OS 5166 0.0147 (44/2994) 0 * Os_TE_245576 Os_TE_245576 Chr6 23366777 23366776 - HARB-1_OS 5166 0.0154 (46/2993) 0 * Os_TE_245577 Os_TE_245574 Chr6 23366605 23366604 + TRUNCATOR 2918 0.0110 (33/2991) 0 * Os_TE_245573 Os_TE_245573 Chr6 23366604 23366605 - TRUNCATOR 2918 0.0100 (30/2993) 0 * Os_TE_245574 Os_TE_245569 Chr6 23364638 23364637 + DS-RICE3N 525 0.0022 (5/2255) 0 * * Os_TE_245553 Chr6 23361868 23361869 - COPIA2-LTR_OS 6433 0.0007 (2/2993) 0 * Os_TE_245552 Os_TE_245552 Chr6 23361864 23361863 + COPIA2-LTR_OS 6433 0.0007 (2/2989) 0 * Os_TE_245553 Os_TE_245546 Chr6 23358533 23358534 + ORSiTERTOOT00033 4884 0.0574 (172/2995) 0 * * Os_TE_245543 Chr6 23354271 23354272 - TOS17LTR 138 0.0010 (3/2966) 0 * Os_TE_245542 Os_TE_245542 Chr6 23354267 23354266 + TOS17LTR 138 0.0010 (3/2967) 0 * Os_TE_245543 Os_TE_245523 Chr6 23348997 23348998 + TELIA 141 0.0007 (2/2977) 0 * Os_TE_245522 Os_TE_245522 Chr6 23348989 23348988 - TELIA 141 0.0007 (2/2978) 0 * Os_TE_245523 Os_TE_245513 Chr6 23340876 23340875 - TRUNCATOR 2918 0.0004 (1/2775) 0 * Os_TE_245512 Os_TE_245512 Chr6 23340875 23340876 + TRUNCATOR 2918 0.0007 (2/2767) 0 * Os_TE_245513 Os_TE_245511 Chr6 23340513 23340514 + COPIA2-LTR_OS 6433 0.0003 (1/2986) 0 * Os_TE_245510 Os_TE_245510 Chr6 23340509 23340508 - COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_245511 Os_TE_245509 Chr6 23339362 23339361 - TRUNCATOR 2918 0.0597 (166/2781) 0 * * Os_TE_245504 Chr6 23338138 23338139 + TRUNCATOR 2918 0.0202 (45/2227) 0 * * Os_TE_245500 Chr6 23337371 23337370 - TYPEM 227 0.0673 (199/2957) 0 * * Os_TE_245482 Chr6 23335139 23335140 + TEMPINDAS 4259 0.3571 (1011/2831) 0 * Os_TE_245481 Os_TE_245481 Chr6 23335132 23335131 - TEMPINDAS 4259 0.3439 (958/2786) 0 * Os_TE_245482 Os_TE_245447 Chr6 23318537 23318536 + RIRE3_LTR 12054 0.0017 (5/2984) 0 * * Os_TE_245440 Chr6 23310100 23310099 + AMYLTP 383 0.0003 (1/2993) 0 * * Os_TE_245407 Chr6 23301985 23301986 - SZ-67LTR 1540 0.0007 (2/2987) 0 * Os_TE_245406 Os_TE_245406 Chr6 23301982 23301981 + SZ-67LTR 1540 0.0007 (2/2991) 0 * Os_TE_245407 Os_TE_245404 Chr6 23300959 23300960 + TRUNCATOR 2918 0.2600 (779/2996) 0 * * Os_TE_245392 Chr6 23294940 23294941 - RETRO1_LTR 8314 0.0033 (9/2725) 0 * * Os_TE_245382 Chr6 23289307 23289306 + NDNA1TNA_OS 334 0.0003 (1/2942) 0 * * Os_TE_245363 Chr6 23285757 23285758 + ORSgTERTOOT00009 12852 0.6393 (1719/2689) 0 * Os_TE_245362 Os_TE_245362 Chr6 23285753 23285752 - RETRO2_LTR 12874 0.6772 (1997/2949) 0 * Os_TE_245363 Os_TE_245351 Chr6 23277270 23277271 + RIRE3_LTR 12054 0.1114 (321/2881) 0 * * Os_TE_245303 Chr6 23244539 23244540 - RETROSAT2LTR 12796 0.0045 (1/224) 0 * * Os_TE_245294 Chr6 23241118 23241119 - ORSgTEMT00600478 361 0.0003 (1/2987) 0 * Os_TE_245293 Os_TE_245293 Chr6 23241113 23241112 + ORSgTEMT00600272 361 0.0003 (1/2988) 0 * Os_TE_245294 Os_TE_245287 Chr6 23237455 23237456 + RIRE2_LTR 11306 0.0035 (10/2843) 0 * * Os_TE_245282 Chr6 23235368 23235369 - STOWAWAY9_OS 235 0.0027 (8/2921) 0 * Os_TE_245281 Os_TE_245281 Chr6 23235367 23235366 + STOWAWAY9_OS 235 0.0021 (6/2926) 0 * Os_TE_245282 Os_TE_245276 Chr6 23232821 23232820 + ORSgTEMT01601934 207 0.0040 (12/2992) 0 * * Os_TE_245275 Chr6 23232558 23232559 - OLO24 345 0.0044 (13/2973) 0 * Os_TE_245274 Os_TE_245274 Chr6 23232556 23232555 + OLO24 345 0.0044 (13/2937) 0 * Os_TE_245275 Os_TE_245273 Chr6 23231990 23231989 + TRUNCATOR 2918 0.0013 (4/2996) 0 * Os_TE_245272 Os_TE_245272 Chr6 23231989 23231990 - TRUNCATOR 2918 0.0010 (3/2994) 0 * Os_TE_245273 Os_TE_245271 Chr6 23231157 23231158 - COPI2_LTR 4733 0.0003 (1/2964) 0 * * Os_TE_245266 Chr6 23229395 23229396 - TRUNCATOR2_LTR 2904 0.1302 (322/2474) 0 * Os_TE_245265 Os_TE_245265 Chr6 23229390 23229389 + ORSiTERTOOT00028 8600 0.1337 (316/2364) 0 * Os_TE_245266 Os_TE_245260 Chr6 23227716 23227717 - RIRE2_LTR 11306 0.2604 (767/2945) 0 * Os_TE_245259 Os_TE_245259 Chr6 23227712 23227711 - ORSgTERT00201216 11284 0.2723 (809/2971) 0 * Os_TE_245260 Os_TE_245253 Chr6 23225567 23225566 - ORSgTEMT02000040 196 0.0554 (165/2977) 0 * * Os_TE_245252 Chr6 23225502 23225501 + HELITRON8_OS 8831 0.0003 (1/2964) 0 * * Os_TE_245248 Chr6 23224218 23224219 - NDNA1TNA_OS 334 0.0041 (12/2955) 0 * Os_TE_245247 Os_TE_245247 Chr6 23224216 23224215 + NDNA1TNA_OS 334 0.0041 (12/2947) 0 * Os_TE_245248 Os_TE_245207 Chr6 23206176 23206177 - RETROSAT3_LTR 11537 0.0003 (1/2970) 0 * Os_TE_245206 Os_TE_245206 Chr6 23206172 23206171 + RETROSAT2LTRA 3112 0.0003 (1/2984) 0 * Os_TE_245207 Os_TE_245163 Chr6 23187167 23187166 - OSTE20 496 0.0003 (1/2948) 0 * * Os_TE_245158 Chr6 23181970 23181971 + RIREX_LTR 8828 0.0020 (6/2993) 0 * Os_TE_245157 Os_TE_245157 Chr6 23181966 23181965 - RIREX_LTR 8828 0.0017 (5/2993) 0 * Os_TE_245158 Os_TE_245145 Chr6 23177870 23177869 + RETROSAT2LTR 12796 0.0023 (7/2992) 0 * * Os_TE_245128 Chr6 23164141 23164140 + RIREX_LTR 8828 0.0003 (1/2991) 0 * * Os_TE_245114 Chr6 23163337 23163336 + ORSgTEMT02400116 209 0.0004 (1/2773) 0 * * Os_TE_245106 Chr6 23161944 23161945 + HARB-1_OS 5166 0.0003 (1/2995) 0 * Os_TE_245105 Os_TE_245105 Chr6 23161942 23161941 - HARB-1_OS 5166 0.0003 (1/2944) 0 * Os_TE_245106 Os_TE_245103 Chr6 23161811 23161812 - INDITTO 263 0.0010 (3/2971) 0 * Os_TE_245102 Os_TE_245102 Chr6 23161809 23161808 + INDITTO 263 0.0010 (3/2966) 0 * Os_TE_245103 Os_TE_245091 Chr6 23157705 23157704 + TRUNCATOR 2918 0.2348 (704/2998) 0 * Os_TE_245090 Os_TE_245090 Chr6 23157704 23157705 - TRUNCATOR 2918 0.2223 (659/2965) 0 * Os_TE_245091 Os_TE_245077 Chr6 23154699 23154493 - ORSgTEMT01400012 212 0.7092 (968/1365) 1 Intact * Os_TE_245074 Chr6 23153925 23153926 + INDITTO 263 0.0061 (18/2942) 0 * Os_TE_245073 Os_TE_245073 Chr6 23153923 23153922 - INDITTO 263 0.0061 (18/2937) 0 * Os_TE_245074 Os_TE_245046 Chr6 23150548 23150549 + DS-RICE4N 715 0.0017 (5/2993) 0 * * Os_TE_245044 Chr6 23148860 23148861 + TWIF 586 0.0003 (1/2897) 0 * Os_TE_245043 Os_TE_245043 Chr6 23148853 23148852 - ORSiTETNOOT00134 607 0.0003 (1/2904) 0 * Os_TE_245044 Os_TE_245038 Chr6 23144425 23144426 - SZ-22_LTR 4403 0.0003 (1/2977) 0 * Os_TE_245037 Os_TE_245037 Chr6 23144421 23144420 + ORSiTERTOOT00034 791 0.0003 (1/2976) 0 * Os_TE_245038 Os_TE_245035 Chr6 23144182 23143803 - MERMITE18B 1306 0.3393 (1007/2968) 1 Intact * Os_TE_245021 Chr6 23140122 23140123 - STOWAWAY1_OS 149 0.6294 (1646/2615) 0 * Os_TE_245020 Os_TE_245020 Chr6 23140121 23140120 - STOWAWAY1_OS 149 0.6711 (1934/2882) 0.17 * Os_TE_245021 Os_TE_245018 Chr6 23140076 23140075 - SC-3_LTR 5748 0.0010 (2/2103) 0 * * Os_TE_245008 Chr6 23130447 23130448 - COPIA2-LTR_OS 6433 0.6737 (1992/2957) 0 * Os_TE_245007 Os_TE_245007 Chr6 23130443 23130442 + COPIA2-LTR_OS 6433 0.6705 (1960/2923) 0 * Os_TE_245008 Os_TE_244998 Chr6 23128897 23128898 + MDR2 6967 0.0029 (7/2435) 0 * * Os_TE_244995 Chr6 23128313 23128312 - ORSgTEMT01601208 238 0.0020 (6/2994) 0 * * Os_TE_244991 Chr6 23127535 23127536 + ORSgTEMT01601591 242 0.0003 (1/2995) 0 * * Os_TE_244990 Chr6 23127464 23127465 + INDITTO 263 0.0003 (1/2992) 0 * * Os_TE_244988 Chr6 23127362 23127361 - HARB-1_OS 5166 0.0017 (5/2987) 0 * * Os_TE_244987 Chr6 23127241 23127242 - ORSgTETNOOT02417 265 0.0017 (5/2982) 0 * Os_TE_244986 Os_TE_244986 Chr6 23127239 23127238 - ORSgTETNOOT02539 260 0.0017 (5/2991) 0 * Os_TE_244987 Os_TE_244969 Chr6 23122594 23122595 - SZ-22_LTR 4403 0.0003 (1/2989) 0 * Os_TE_244968 Os_TE_244968 Chr6 23122590 23122589 + ORSiTERTOOT00226 792 0.0003 (1/2990) 0 * Os_TE_244969 Os_TE_244960 Chr6 23117105 23117104 - ORSiTERT00100062 5674 0.0017 (5/2973) 0 * * Os_TE_244958 Chr6 23116842 23116843 - RIRE2_LTR 11306 0.0024 (7/2962) 0 * Os_TE_244957 Os_TE_244957 Chr6 23116838 23116837 + RIRE2_LTR 11306 0.0024 (7/2960) 0 * Os_TE_244958 Os_TE_244954 Chr6 23116020 23116021 + SINE9_OS 293 0.0859 (251/2923) 0 * Os_TE_244953 Os_TE_244953 Chr6 23116010 23116009 - SINE9_OS 293 0.0778 (226/2905) 0 * Os_TE_244954 Os_TE_244945 Chr6 23113775 23114766 - DS-RICE4N 715 0.7277 (719/988) 1 Intact * Os_TE_244944 Chr6 23113734 23113735 - ORSgTETNOOT02417 265 0.2778 (272/979) 0 * Os_TE_244943 Os_TE_244943 Chr6 23113732 23113731 + ORSgTETNOOT00221 261 0.2555 (245/959) 0 * Os_TE_244944 Os_TE_244940 Chr6 23113332 23113333 - STOWAWAY9_OS 235 0.2713 (268/988) 0 * * Os_TE_244939 Chr6 23113180 23113181 - ORSgTEMT01800062 435 0.0901 (263/2919) 0 * Os_TE_244938 Os_TE_244938 Chr6 23113179 23113178 - ORSgTEMT01800052 396 0.0883 (263/2979) 0 * Os_TE_244939 Os_TE_244936 Chr6 23107918 23107919 + F770 284 0.0037 (11/2973) 0 * Os_TE_244935 Os_TE_244935 Chr6 23107916 23107915 - F770 284 0.0037 (11/2977) 0 * Os_TE_244936 Os_TE_244934 Chr6 23107270 23107271 + NDNA1TNA_OS 334 0.0003 (1/2986) 0 * * Os_TE_244925 Chr6 23105670 23105671 + ORSgTETN00100092 209 0.0003 (1/2982) 0 * * Os_TE_244917 Chr6 23102070 23102069 + TWIFBIG 3567 0.0848 (250/2949) 0 * * Os_TE_244913 Chr6 23098909 23098908 - ORSgTEMT00600085 364 0.4372 (1301/2976) 0 * Os_TE_244912 Os_TE_244912 Chr6 23098908 23098909 + CASTAWAY 364 0.4213 (1237/2936) 0 * Os_TE_244913 Os_TE_244905 Chr6 23093258 23093259 + ORSgTETNOOT01930 140 0.0007 (2/2751) 0 * Os_TE_244904 Os_TE_244904 Chr6 23093256 23093255 - ORSgTEMT00501447 126 0.0007 (2/2834) 0 * Os_TE_244905 Os_TE_244898 Chr6 23088415 23088416 + ORSgTEMT06100010 269 0.0011 (3/2611) 0 * Os_TE_244897 Os_TE_244897 Chr6 23088414 23088413 - ORSgTEMT06100010 269 0.0011 (3/2612) 0 * Os_TE_244898 Os_TE_244896 Chr6 23088228 23088229 + DS-RICE2N 613 0.2791 (465/1666) 0 * Os_TE_244895 Os_TE_244895 Chr6 23088221 23088220 - DS-RICE2N 613 0.2986 (545/1825) 0 * Os_TE_244896 Os_TE_244876 Chr6 23085508 23085507 - RETRO2_LTR 12874 0.0004 (1/2811) 0 * * Os_TE_244859 Chr6 23073958 23073959 + RIREX_LTR 8828 0.5848 (1297/2218) 0 * Os_TE_244858 Os_TE_244858 Chr6 23073954 23073953 - RIREX_LTR 8828 0.5797 (1277/2203) 0 * Os_TE_244859 Os_TE_244857 Chr6 23073216 23073217 - COPIA2-LTR_OS 6433 0.0027 (6/2234) 0 * Os_TE_244856 Os_TE_244856 Chr6 23073212 23073211 + COPIA2-LTR_OS 6433 0.0025 (4/1612) 0 * Os_TE_244857 Os_TE_244853 Chr6 23071944 23074342 - OSTE33 1012 0.8282 (2135/2578) 1 Intact * Os_TE_244846 Chr6 23070697 23070696 + EnSpm-11_OS 13126 0.0077 (20/2604) 0 * * Os_TE_244819 Chr6 23056870 23056869 + TRUNCATOR 2918 0.0004 (1/2682) 0 * * Os_TE_244802 Chr6 23053338 23053339 - TELIA 141 0.0007 (2/2870) 0 * Os_TE_244801 Os_TE_244801 Chr6 23053330 23053329 + TELIA 141 0.0007 (2/2866) 0 * Os_TE_244802 Os_TE_244799 Chr6 23052499 23052498 + ORSiTERTOOT00296 5553 0.0003 (1/2877) 0 * * Os_TE_244764 Chr6 23035340 23035339 + NDNA1TNA_OS 334 0.0005 (1/2217) 0 * Os_TE_244763 Os_TE_244763 Chr6 23035339 23035340 + ORSgTEMT00100272 356 0.0009 (2/2198) 0 * Os_TE_244764 Os_TE_244744 Chr6 23028610 23028609 + RETROSAT2LTR 12796 0.0488 (139/2847) 0 * * Os_TE_244743 Chr6 23028191 23028192 - SZ-48LTR 3632 0.0014 (4/2835) 0 * Os_TE_244742 Os_TE_244742 Chr6 23028187 23028186 + SZ-48LTR 3632 0.0011 (3/2837) 0 * Os_TE_244743 Os_TE_244733 Chr6 23027040 23027039 + MUDROS2 6821 0.2421 (600/2478) 0 * * Os_TE_244728 Chr6 23025027 23025028 - COPIA2-LTR_OS 6433 0.0028 (8/2869) 0 * Os_TE_244727 Os_TE_244727 Chr6 23025023 23025022 + COPIA2-LTR_OS 6433 0.0017 (5/2921) 0 * Os_TE_244728 Os_TE_244726 Chr6 23024838 23024839 + COPIA2-LTR_OS 6433 0.0003 (1/2945) 0 * * Os_TE_244721 Chr6 23023370 23023371 - MERMITE18C 1473 0.3223 (946/2935) 0 * * Os_TE_244720 Chr6 23023244 23021478 - MERMITE18E 1528 0.6910 (2044/2958) 1 Intact Os_TE_244716 Os_TE_244716 Chr6 23021474 23023242 + MERMITE18E 1528 0.6857 (1926/2809) 1 Intact Os_TE_244720 Os_TE_244675 Chr6 23008416 23008415 - STOWAWAY10_OS 259 0.0010 (3/2950) 0 * Os_TE_244674 Os_TE_244674 Chr6 23008415 23008416 - ORSgTEMT00101174 225 0.0010 (3/2996) 0 * Os_TE_244675 Os_TE_244670 Chr6 23004863 23004864 - ORSgTEMT01601432 239 0.0894 (260/2907) 0 * Os_TE_244668 Os_TE_244668 Chr6 23004851 23004850 + ORSgTEMT01602413 239 0.0011 (3/2663) 0 * Os_TE_244670 Os_TE_244667 Chr6 23004848 23004849 - ORSgTEMT01602413 239 0.0007 (2/2907) 0 * * Os_TE_244665 Chr6 23004179 23004180 + RIRE5-LTR_OS 6427 0.0458 (135/2948) 0 * * Os_TE_244664 Chr6 23004175 23004174 - SZ-55_LTR 10318 0.0003 (1/2944) 0 * * Os_TE_244663 Chr6 23003688 23003689 + MULEX_OS 1797 0.0102 (30/2949) 0 * Os_TE_244662 Os_TE_244662 Chr6 23003681 23003680 + MULEX_OS 1797 0.0102 (30/2931) 0 * Os_TE_244663 Os_TE_244655 Chr6 23001574 23001575 - NDNA1TNA_OS 334 0.0075 (22/2948) 0 * * Os_TE_244654 Chr6 23001572 23001571 + NDNA1TNA_OS 334 0.0559 (165/2950) 0 * * Os_TE_244652 Chr6 23001197 23001196 + CACTA-I 1124 0.0020 (6/2932) 0 * * Os_TE_244650 Chr6 23000450 23000449 - ORSgTERT00201216 11284 0.0017 (5/2914) 0 * * Os_TE_244649 Chr6 23000413 23000414 - RIRE2_LTR 11306 0.0013 (2/1598) 0 * Os_TE_244648 Os_TE_244648 Chr6 23000409 23000408 + RIRE2_LTR 11306 0.0007 (2/2963) 0 * Os_TE_244649 Os_TE_244638 Chr6 22995887 22995886 + ORSgTEMT00500560 148 0.1947 (170/873) 0 * * Os_TE_244634 Chr6 22989711 22989712 + TEMPINDAS 4259 0.0127 (9/710) 0 * * Os_TE_244626 Chr6 22985822 22985823 + TRUNCATOR 2918 0.0047 (12/2531) 0 * * Os_TE_244608 Chr6 22973506 22973507 - MuDR3_OS 8604 0.0016 (1/633) 0 * * Os_TE_244607 Chr6 22973046 22973047 + COPIA2-LTR_OS 6433 0.0011 (3/2828) 0 * Os_TE_244606 Os_TE_244606 Chr6 22973042 22973041 - COPIA2-LTR_OS 6433 0.0011 (3/2823) 0 * Os_TE_244607 Os_TE_244580 Chr6 22963401 22963402 - MPING 430 0.0004 (1/2823) 0 * Os_TE_244579 Os_TE_244579 Chr6 22963399 22963398 + MPING 430 0.0004 (1/2785) 0 * Os_TE_244580 Os_TE_244576 Chr6 22962815 22962816 - MERMITE18B 1306 0.0046 (13/2799) 0 * Os_TE_244575 Os_TE_244575 Chr6 22962807 22962806 - MERMITE18B 1306 0.0184 (52/2822) 0 * Os_TE_244576 Os_TE_244571 Chr6 22958347 22958346 - ORSgTEMT00502359 149 0.5013 (932/1859) 0 * * Os_TE_244567 Chr6 22957495 22957496 - STOWAWAY45_OS 266 0.0097 (8/827) 0 * * Os_TE_244565 Chr6 22955091 22955090 - STOWAWAY51_OS 246 0.0461 (96/2083) 0 * * Os_TE_244560 Chr6 22951075 22951076 + ORSgTEMT01700715 134 0.0294 (29/987) 0 * * Os_TE_244554 Chr6 22948603 22948604 + NDNA1TNA_OS 334 0.0024 (2/836) 0 * Os_TE_244553 Os_TE_244553 Chr6 22948601 22948600 - NDNA1TNA_OS 334 0.0036 (3/840) 0 * Os_TE_244554 Os_TE_244552 Chr6 22948476 22948475 + DS-RICE4N 715 0.0107 (9/843) 0 * Os_TE_244551 Os_TE_244551 Chr6 22948475 22948476 + ORSiTETN00100018 738 0.0083 (7/842) 0 * Os_TE_244552 Os_TE_244545 Chr6 22946412 22946413 - ORSgTEMT00901269 237 0.0154 (13/845) 0 * * Os_TE_244539 Chr6 22945507 22945508 + BAJIELTR 4500 0.0161 (12/744) 0 * * Os_TE_244526 Chr6 22936686 22936685 - SZ-62LTR 3649 0.0066 (9/1373) 0 * * Os_TE_244523 Chr6 22934500 22934501 + ORSgTEMT00100272 356 0.1256 (160/1274) 0 * * Os_TE_244501 Chr6 22874377 22931252 + RETRO1_LTR 8314 0.6773 (745/1100) 1 Intact * Os_TE_244499 Chr6 22872977 22872978 - RIRE2_LTR 11306 0.0009 (1/1063) 0 * Os_TE_244498 Os_TE_244498 Chr6 22872973 22872972 + RIREX_LTR 8828 0.0010 (1/1046) 0 * Os_TE_244499 Os_TE_244497 Chr6 22872934 22872573 + ORSgTEMT00600576 351 0.7844 (1066/1359) 1 Intact Os_TE_244495 Os_TE_244495 Chr6 22872572 22872932 + ORSgTEMT00600272 361 0.8159 (1059/1298) 1 Intact Os_TE_244497 Os_TE_244494 Chr6 22872471 22872228 + SINE9_OS 293 0.7332 (1341/1829) 1 Intact * Os_TE_244492 Chr6 22871873 22871983 + ORSgTEMT01700637 157 0.3766 (1042/2767) 1 Intact * Os_TE_244491 Chr6 22871544 22871387 - UNIQUE 158 0.3464 (1037/2994) 1 Intact * Os_TE_244486 Chr6 22871202 22871203 + ORSgTETNOOT01834 251 0.0017 (5/2996) 0 * * Os_TE_244475 Chr6 22868869 22868870 - AMYLTP 383 0.0536 (154/2872) 0 * Os_TE_244474 Os_TE_244474 Chr6 22868861 22868860 + AMYLTP 383 0.0528 (154/2919) 0 * Os_TE_244475 Os_TE_244467 Chr6 22866937 22866938 + COPIA2-LTR_OS 6433 0.0003 (1/2977) 0 * Os_TE_244466 Os_TE_244466 Chr6 22866933 22866932 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_244467 Os_TE_244448 Chr6 22858332 22858333 + ORSgTETNOOT01930 140 0.0013 (4/2973) 0 * * Os_TE_244447 Chr6 22858100 22858099 - ENSPM4_OS 11610 0.0157 (47/2987) 0 * * Os_TE_244445 Chr6 22857482 22857243 + ORSgTEMT01601422 235 0.3245 (962/2965) 1 Intact Os_TE_244442 Os_TE_244442 Chr6 22857239 22857489 - ORSgTEMT01600768 234 0.3321 (983/2960) 1 Intact Os_TE_244445 Os_TE_244441 Chr6 22857186 22857185 + ORSgTEMT01601465 233 0.0004 (1/2631) 0 * * Os_TE_244433 Chr6 22855327 22855089 + ORSgTEMT01601036 240 0.3253 (966/2970) 1 Intact Os_TE_244431 Os_TE_244431 Chr6 22855089 22855327 - ORSgTEMT01601432 239 0.3817 (955/2502) 1 Intact Os_TE_244433 Os_TE_244428 Chr6 22852976 22852977 - CACTA-H 1152 0.0017 (5/2883) 0 * * Os_TE_244417 Chr6 22847863 22847864 - CACTA-Q 2268 0.0376 (112/2981) 0 * * Os_TE_244415 Chr6 22847176 22847175 + F524 291 0.0124 (35/2821) 0 * * Os_TE_244411 Chr6 22846499 22846500 - F569 228 0.0003 (1/2982) 0 * * Os_TE_244410 Chr6 22845667 22845668 - ORSgTETN00200001 10994 0.0020 (6/2970) 0 * * Os_TE_244408 Chr6 22845586 22845587 - TYPEU1 380 0.0708 (211/2980) 0 * Os_TE_244407 Os_TE_244407 Chr6 22845577 22845576 + TYPEU4 402 0.0724 (216/2985) 0 * Os_TE_244408 Os_TE_244396 Chr6 22841760 22841761 + COPIA2-LTR_OS 6433 0.0004 (1/2844) 0 * Os_TE_244395 Os_TE_244395 Chr6 22841756 22841755 - COPIA2-LTR_OS 6433 0.0003 (1/2912) 0 * Os_TE_244396 Os_TE_244394 Chr6 22841744 22841743 + ORSiCMCM00100019 2717 0.0257 (75/2913) 0 * * Os_TE_244392 Chr6 22840463 22840464 - TREP215 239 0.0608 (181/2975) 0 * * Os_TE_244391 Chr6 22840090 22840091 - COWARD-3 221 0.0652 (195/2990) 0 * Os_TE_244390 Os_TE_244390 Chr6 22840088 22840087 + COWARD-3 221 0.0639 (191/2990) 0 * Os_TE_244391 Os_TE_244388 Chr6 22836827 22833228 - ORSiTETNOOT00200 3563 0.0454 (131/2887) 1 Intact * Os_TE_244381 Chr6 22831720 22831721 - ORSiCMCM00100013 9728 0.0661 (196/2967) 0 * * Os_TE_244380 Chr6 22831648 22831649 + SZ-9LTR 965 0.1242 (371/2986) 0 * Os_TE_244379 Os_TE_244379 Chr6 22831644 22831643 - SZ-9LTR 965 0.1262 (377/2988) 0 * Os_TE_244380 Os_TE_244371 Chr6 22830512 22830511 + ORSiCMCM00100013 9728 0.0631 (187/2963) 0 * * Os_TE_244370 Chr6 22830348 22830349 - RETRO1_LTR 8314 0.0021 (6/2810) 0 * Os_TE_244369 Os_TE_244369 Chr6 22830344 22830343 + RETRO2A_LTR 12895 0.0022 (6/2786) 0 * Os_TE_244370 Os_TE_244366 Chr6 22829812 22829813 + COPIA2-LTR_OS 6433 0.0018 (5/2723) 0 * Os_TE_244365 Os_TE_244365 Chr6 22829808 22829807 - COPIA2-LTR_OS 6433 0.0023 (5/2207) 0 * Os_TE_244366 Os_TE_244359 Chr6 22829117 22829118 + SZ-38 8643 0.0644 (193/2995) 0 * * Os_TE_244358 Chr6 22829081 22829080 - Cassandra_OS-LTR 764 0.0024 (7/2965) 0 * * Os_TE_244357 Chr6 22829050 22829051 + Cassandra_OS-LTR 764 0.0017 (5/2982) 0 * * Os_TE_244330 Chr6 22820393 22820392 - ORSgTEMT00101046 330 0.0004 (1/2420) 0 * * Os_TE_244329 Chr6 22819726 22819727 - ORSgTEMT00501356 145 0.1273 (362/2843) 0 * * Os_TE_244328 Chr6 22819720 22819719 + SPMLIKE 10989 0.0510 (132/2586) 0 * * Os_TE_244324 Chr6 22818804 22818805 - RIREX_LTR 8828 0.0077 (23/2992) 0 * Os_TE_244323 Os_TE_244323 Chr6 22818800 22818799 + RIREX_LTR 8828 0.0089 (23/2597) 0 * Os_TE_244324 Os_TE_244316 Chr6 22815614 22818311 + OSTE14 885 0.8674 (2257/2602) 1 Intact * Os_TE_244312 Chr6 22815001 22815000 - ORSgTEMT02400246 177 0.3282 (299/911) 0 * * Os_TE_244306 Chr6 22814180 22814181 + RIREX_LTR 8828 0.0008 (2/2381) 0 * Os_TE_244305 Os_TE_244305 Chr6 22814176 22814175 - RIREX_LTR 8828 0.0008 (2/2375) 0 * Os_TE_244306 Os_TE_244304 Chr6 22813183 22813184 + RIREX_LTR 8828 0.0227 (68/2993) 0 * Os_TE_244303 Os_TE_244303 Chr6 22813179 22813178 - RIREX_LTR 8828 0.0224 (67/2989) 0 * Os_TE_244304 Os_TE_244299 Chr6 22810823 22810824 - RIREX_LTR 8828 0.0030 (9/2990) 0 * Os_TE_244298 Os_TE_244298 Chr6 22810819 22810818 + RIREX_LTR 8828 0.0030 (9/2991) 0 * Os_TE_244299 Os_TE_244297 Chr6 22810342 22810343 - SZ-5LTR 1223 0.0147 (44/2995) 0 * Os_TE_244296 Os_TE_244296 Chr6 22810338 22810337 + COPIA1-LTR_OS 9292 0.0150 (45/2997) 0 * Os_TE_244297 Os_TE_244294 Chr6 22810031 22804890 + ORSiTERTOOT00402 2660 0.0354 (106/2996) 1 Intact * Os_TE_244290 Chr6 22804890 22810031 - ORSiTERTOOT00402 2660 0.4258 (1274/2992) 1 Intact * Os_TE_244287 Chr6 22804278 22804277 - NDNA1TNA_OS 334 0.0110 (31/2811) 0 * * Os_TE_244286 Chr6 22803781 22803782 - OLO24 345 0.1257 (370/2944) 0 * * Os_TE_244279 Chr6 22801367 22801368 + ORSgTEMT01400032 215 0.7763 (2117/2727) 0 * * Os_TE_244277 Chr6 22801238 22800947 - STOWAWAY11_OS 292 0.3181 (167/525) 1 Intact Os_TE_244275 Os_TE_244275 Chr6 22800947 22801238 + STOWAWAY11_OS 292 0.3060 (149/487) 1 Intact Os_TE_244277 Os_TE_244272 Chr6 22798866 22798865 + ORSgTEMT00101674 340 0.0121 (36/2980) 0 * * Os_TE_244271 Chr6 22798195 22798196 - SC-3_LTR 5748 0.0003 (1/2980) 0 * Os_TE_244270 Os_TE_244270 Chr6 22798191 22798190 + ORSiTERTOOT00296 5553 0.0003 (1/2983) 0 * Os_TE_244271 Os_TE_244264 Chr6 22785305 22792582 - RIREX_LTR 8828 0.8010 (157/196) 1 Intact * Os_TE_244261 Chr6 22781640 22781501 - ORSgTETNOOT01930 140 0.2163 (165/763) 1 Intact * Os_TE_244234 Chr6 22768530 22768531 - ORSgTEMT01600578 239 0.0117 (2/171) 0 * * Os_TE_244229 Chr6 22765221 22765222 + COPIA1-LTR_OS 9292 0.0422 (7/166) 0 * Os_TE_244228 Os_TE_244228 Chr6 22765217 22765216 - COPIA1-LTR_OS 9292 0.0476 (8/168) 0 * Os_TE_244229 Os_TE_244178 Chr6 22726728 22726575 + ORSgTEMT01701115 144 0.7725 (163/211) 1 Intact * Os_TE_244170 Chr6 22722383 22722384 + F524 291 0.0497 (9/181) 0 * * Os_TE_244153 Chr6 22704846 22704845 - JOUZHENA 607 0.1307 (368/2816) 0 * * Os_TE_244148 Chr6 22700286 22700285 - TYPEM 227 0.8312 (2453/2951) 0 * * Os_TE_244144 Chr6 22697499 22697261 - ORSgTEMT01601493 303 0.0543 (162/2984) 1 Intact Os_TE_244143 Os_TE_244143 Chr6 22697261 22697499 - ORSgTEMT01601432 239 0.0535 (160/2989) 1 Intact Os_TE_244144 Os_TE_244140 Chr6 22695323 22695324 - OSTE9 421 0.3925 (1033/2632) 0 * * Os_TE_244137 Chr6 22695165 22695166 + EnSpm-13_OS 11171 0.0007 (2/2815) 0 * Os_TE_244136 Os_TE_244136 Chr6 22695163 22695162 - EnSpm-13_OS 11171 0.0007 (2/2790) 0 * Os_TE_244137 Os_TE_244131 Chr6 22694857 22694620 - ORSgTEMT01601834 234 0.0585 (171/2923) 1 Intact Os_TE_244129 Os_TE_244129 Chr6 22694620 22694857 - ORSgTEMT01601696 238 0.0599 (176/2938) 1 Intact Os_TE_244131 Os_TE_244125 Chr6 22693610 22693892 + ID-4 284 0.0695 (180/2590) 1 Intact * Os_TE_244111 Chr6 22690007 22690006 + ORSgTEMT01602181 239 0.0004 (1/2657) 0 * Os_TE_244110 Os_TE_244110 Chr6 22690004 22690005 - ORSgTEMT01600578 239 0.0007 (2/2874) 0 * Os_TE_244111 Os_TE_244094 Chr6 22682672 22682673 + ENSPM6_OS 9815 0.0003 (1/2955) 0 * Os_TE_244093 Os_TE_244093 Chr6 22682670 22682669 - ENSPM6_OS 9815 0.0003 (1/2963) 0 * Os_TE_244094 Os_TE_244090 Chr6 22681877 22681876 - INDITTO 263 0.0004 (1/2417) 0 * * Os_TE_244075 Chr6 22680102 22680101 - DS-RICE2N 613 0.0003 (1/2925) 0 * * Os_TE_244061 Chr6 22675018 22675019 - SZ-35LTR 3853 0.7497 (2232/2977) 0 * Os_TE_244060 Os_TE_244060 Chr6 22675015 22675014 + RETROSAT4_LTR 13504 0.7260 (1966/2708) 0 * Os_TE_244061 Os_TE_244057 Chr6 22674014 22674013 - MPING 430 0.0003 (1/2948) 0 * * Os_TE_244052 Chr6 22672063 22672064 + SPMLIKE 10989 0.0094 (28/2990) 0 * Os_TE_244051 Os_TE_244051 Chr6 22672061 22672060 - ORSgTETN00200001 10994 0.0100 (30/2990) 0 * Os_TE_244052 Os_TE_244050 Chr6 22671532 22671533 - COPIA2-LTR_OS 6433 0.0027 (8/2983) 0 * * Os_TE_244044 Chr6 22669037 22669038 - TEMPINDAS 4259 0.0860 (257/2989) 0 * * Os_TE_244035 Chr6 22661782 22661783 + JOUZHENA 607 0.0017 (5/2973) 0 * Os_TE_244034 Os_TE_244034 Chr6 22661775 22661774 - JOUZHENA 607 0.0013 (4/2975) 0 * Os_TE_244035 Os_TE_244032 Chr6 22661189 22661190 + ORSgTEMT01601122 212 0.0795 (206/2590) 0 * * Os_TE_244025 Chr6 22659709 22659710 - TYPEM 227 0.0004 (1/2677) 0 * Os_TE_244024 Os_TE_244024 Chr6 22659708 22659707 - ORSgTEMT02400179 221 0.0004 (1/2706) 0 * Os_TE_244025 Os_TE_244006 Chr6 22652025 22652024 + INDITTO 263 0.0016 (2/1271) 0 * * Os_TE_243996 Chr6 22646657 22646411 + ORSgTEMT00901202 248 0.5581 (240/430) 1 Intact * Os_TE_243986 Chr6 22646014 22645752 + INDITTO 263 0.7508 (247/329) 1 Intact Os_TE_243984 Os_TE_243984 Chr6 22645752 22646014 - INDITTO 263 0.2874 (248/863) 1 Intact Os_TE_243986 Os_TE_243982 Chr6 22644406 22625683 - ATLANTYS-LTR_OS 13740 0.2325 (246/1058) 1 Intact * Os_TE_243923 Chr6 22620287 22620049 - ORSgTEMT01601768 238 0.5779 (241/417) 1 Intact * Os_TE_243922 Chr6 22620273 22620272 - ORSgTETNOOT02413 196 0.0013 (1/800) 0 * * Os_TE_243906 Chr6 22615552 22615553 - ORSgTEMT02400206 225 0.0039 (1/256) 0 * * Os_TE_243853 Chr6 22588074 22593878 - OSTE1 801 0.5460 (184/337) 1 Intact * Os_TE_243851 Chr6 22587818 22587817 - ORSgTEMT00901723 248 0.0029 (1/339) 0 * * Os_TE_243850 Chr6 22587729 22587974 + STOWAWAY41_OS 264 0.8776 (208/237) -1 Intact * Os_TE_243808 Chr6 22569534 22569271 - STOWAWAY13_OS 251 0.5687 (240/422) 1 Intact * Os_TE_243805 Chr6 22568772 22568911 - ORSgTETNOOT01930 140 0.5565 (256/460) 1 Intact * Os_TE_243803 Chr6 22568138 22567909 - YOUREN 286 0.5558 (249/448) 1 Intact * Os_TE_243801 Chr6 22567685 22567491 + ORSgTEMT01701591 154 0.5471 (244/446) 1 Intact Os_TE_243800 Os_TE_243800 Chr6 22567493 22567683 + STOWAWAY1_OS 149 0.5242 (227/433) 1 Intact Os_TE_243801 Os_TE_243785 Chr6 22560449 22560450 + SPMLIKE 10989 0.0674 (150/2224) 0 * * Os_TE_243780 Chr6 22555837 22555836 + ORSgTEMT00500476 150 0.4060 (175/431) 0 * * Os_TE_243769 Chr6 22552233 22551900 - ORSgTEMT00101341 314 0.5687 (240/422) 1 Intact * Os_TE_243766 Chr6 22551564 22551563 + MuDR3_OS 8604 0.0069 (3/437) 0 * * Os_TE_243765 Chr6 22551311 22551312 + ORSgTEMT01600891 233 0.4480 (198/442) 0 * Os_TE_243764 Os_TE_243764 Chr6 22551308 22551307 + ORSgTEMT01602413 239 0.4106 (170/414) 0 * Os_TE_243765 Os_TE_243762 Chr6 22550933 22550779 - ORSgTEMT00500439 153 0.5492 (240/437) 1 Intact * Os_TE_243759 Chr6 22550733 22550469 - INDITTO 263 0.7515 (245/326) 1 Intact Os_TE_243756 Os_TE_243756 Chr6 22550469 22550733 + INDITTO 263 0.5563 (252/453) 1 Intact Os_TE_243759 Os_TE_243752 Chr6 22548562 22548561 + STOWAWAY21_OS 243 0.4362 (195/447) 0 * * Os_TE_243750 Chr6 22548271 22548272 - INDITTO 263 0.4437 (201/453) 0 * Os_TE_243749 Os_TE_243749 Chr6 22548269 22548268 - ORSgTETNOOT00053 263 0.4484 (204/455) 0 * Os_TE_243750 Os_TE_243745 Chr6 22547655 22547128 + TNR12 528 0.6573 (1851/2816) 1 Intact * Os_TE_243744 Chr6 22547128 22547650 - TNR12 528 0.0811 (231/2849) 1 Intact * Os_TE_243736 Chr6 22546011 22545772 + SINE9_OS 293 0.1571 (440/2800) 1 Intact * Os_TE_243719 Chr6 22542425 22542426 + ORSiTERTOOT00226 792 0.0004 (1/2711) 0 * * Os_TE_243702 Chr6 22539095 22539096 + ORSgTETNOOT00032 218 0.0028 (7/2480) 0 * * Os_TE_243700 Chr6 22538329 22538328 + RIREX_LTR 8828 0.0032 (8/2482) 0 * * Os_TE_243697 Chr6 22537248 22537249 + SZ-55_LTR 10318 0.1307 (371/2839) 0 * * Os_TE_243696 Chr6 22536043 22536044 + OSHOOTER 11544 0.0032 (9/2843) 0 * * Os_TE_243689 Chr6 22533420 22533421 - TRUNCATOR2_LTR 2904 0.0032 (9/2817) 0 * * Os_TE_243681 Chr6 22531337 22531338 - RIRE3_LTR 12054 0.0028 (8/2827) 0 * * Os_TE_243670 Chr6 22529056 22529055 - RIRE3A_LTR 10580 0.0033 (9/2730) 0 * * Os_TE_243643 Chr6 22522631 22522632 + SPMLIKE 10989 0.0032 (9/2850) 0 * Os_TE_243642 Os_TE_243642 Chr6 22522629 22522628 - ORSgTETN00200001 10994 0.0032 (9/2848) 0 * Os_TE_243643 Os_TE_243641 Chr6 22522075 22517640 + RETROSAT4_LTR 13504 0.5559 (1651/2970) 1 Solo_LTR * Os_TE_243592 Chr6 22493980 22493979 + RIREX_LTR 8828 0.0003 (1/2967) 0 * * Os_TE_243587 Chr6 22491680 22491679 + ORSgTEMT01602181 239 0.0027 (8/2969) 0 * * Os_TE_243541 Chr6 22465341 22465340 - ORSgTEMT01600768 234 0.0007 (2/2979) 0 * * Os_TE_243538 Chr6 22465127 22465126 + RIREX_LTR 8828 0.0168 (50/2983) 0 * * Os_TE_243497 Chr6 22426054 22426055 + RIRE3_LTR 12054 0.0854 (243/2847) 0 * * Os_TE_243495 Chr6 22425753 22425752 - TRUNCATOR 2918 0.1573 (415/2639) 0 * Os_TE_243494 Os_TE_243494 Chr6 22425752 22425753 + TRUNCATOR 2918 0.1809 (495/2737) 0 * Os_TE_243495 Os_TE_243453 Chr6 22413484 22413483 - ORSiTERTOOT00333 4719 0.4070 (1149/2823) 0 * * Os_TE_243446 Chr6 22408398 22408399 + RETROSAT2LTR 12796 0.0451 (133/2949) 0 * * Os_TE_243440 Chr6 22407080 22407079 - TRUNCATOR2_LTR 2904 0.2399 (715/2980) 0 * * Os_TE_243420 Chr6 22403848 22403847 + CACTA-I 1124 0.1693 (497/2936) 0 * * Os_TE_243407 Chr6 22401651 22401652 - RIRE3_LTR 12054 0.0456 (134/2940) 0 * * Os_TE_243406 Chr6 22400265 22400266 + RIRE3_LTR 12054 0.0058 (17/2921) 0 * Os_TE_243405 Os_TE_243405 Chr6 22400261 22400260 - RIRE3_LTR 12054 0.0062 (18/2922) 0 * Os_TE_243406 Os_TE_243392 Chr6 22398026 22398027 + RIRE2_LTR 11306 0.0063 (19/2995) 0 * Os_TE_243391 Os_TE_243391 Chr6 22398022 22398021 - RIRE2_LTR 11306 0.0063 (19/2995) 0 * Os_TE_243392 Os_TE_243370 Chr6 22394153 22394152 + TRUNCATOR 2918 0.0167 (50/2988) 0 * Os_TE_243369 Os_TE_243369 Chr6 22394152 22394153 - TRUNCATOR 2918 0.0164 (49/2989) 0 * Os_TE_243370 Os_TE_243344 Chr6 22386466 22386467 + OSTE20 496 0.0168 (50/2985) 0 * * Os_TE_243342 Chr6 22385781 22385782 - ORSgTETN00200001 10994 0.0395 (118/2989) 0 * Os_TE_243341 Os_TE_243341 Chr6 22385779 22385778 + SPMLIKE 10989 0.0432 (129/2989) 0 * Os_TE_243342 Os_TE_243321 Chr6 22380075 22380074 - TRUNCATOR 2918 0.0457 (127/2779) 0 * Os_TE_243320 Os_TE_243320 Chr6 22380074 22380075 + TRUNCATOR 2918 0.0621 (176/2836) 0 * Os_TE_243321 Os_TE_243318 Chr6 22374885 22374886 - OSTONOR1_LTR 6440 0.0003 (1/2995) 0 * Os_TE_243317 Os_TE_243317 Chr6 22374881 22374880 + OSTONOR1_LTR 6440 0.0003 (1/2994) 0 * Os_TE_243318 Os_TE_243304 Chr6 22367764 22367765 + RETROSAT2LTR 12796 0.6509 (1650/2535) 0 * Os_TE_243303 Os_TE_243303 Chr6 22367762 22367761 - RETROSAT2LTR 12796 0.7030 (2057/2926) 0 * Os_TE_243304 Os_TE_243287 Chr6 22360235 22360236 - SC-4_LTR 5218 0.0003 (1/2990) 0 * Os_TE_243286 Os_TE_243286 Chr6 22360231 22360230 + SC-4_LTR 5218 0.0004 (1/2727) -1 * Os_TE_243287 Os_TE_243277 Chr6 22351728 22351729 + NDNA1TNA_OS 334 0.0007 (2/2994) 0 * Os_TE_243276 Os_TE_243276 Chr6 22351727 22351726 - NDNA1TNA_OS 334 0.0007 (2/2991) 0 * Os_TE_243277 Os_TE_243273 Chr6 22351152 22351151 - SZ-67LTR 1540 0.0010 (3/2930) 0 * * Os_TE_243264 Chr6 22349840 22349839 - COPIA2-LTR_OS 6433 0.2519 (460/1826) -1 * * Os_TE_243243 Chr6 22338092 22338093 - KIDDOC 275 0.0010 (3/2991) 0 * * Os_TE_243225 Chr6 22334865 22334866 - ORSgTEMT02400246 177 0.0007 (2/2913) 0 * * Os_TE_243224 Chr6 22334849 22334850 - MERMITE18E 1528 0.0014 (4/2914) 0 * * Os_TE_243220 Chr6 22330106 22329862 + STOWAWAY51_OS 246 0.0797 (237/2975) 1 Intact * Os_TE_243217 Chr6 22329184 22329183 + OSTE20 496 0.0094 (28/2974) 0 * Os_TE_243216 Os_TE_243216 Chr6 22329181 22329182 - OSTE20 496 0.0100 (28/2801) 0 * Os_TE_243217 Os_TE_243212 Chr6 22326425 22326424 + STOWAWAY51_OS 246 0.0024 (7/2969) 0 * Os_TE_243211 Os_TE_243211 Chr6 22326419 22326420 + ORSgTEMT01601591 242 0.0017 (5/2970) 0 * Os_TE_243212 Os_TE_243190 Chr6 22318991 22318992 + NDNA1TNA_OS 334 0.0034 (10/2973) 0 * Os_TE_243189 Os_TE_243189 Chr6 22318988 22318987 - NDNA1TNA_OS 334 0.0028 (8/2908) 0 * Os_TE_243190 Os_TE_243141 Chr6 22301219 22301220 - RIREX_LTR 8828 0.0003 (1/2918) 0 * Os_TE_243140 Os_TE_243140 Chr6 22301215 22301214 + RIREX_LTR 8828 0.0003 (1/2901) 0 * Os_TE_243141 Os_TE_243133 Chr6 22295821 22295822 - ORSiTERT00400066 124 0.0013 (4/2964) 0 * * Os_TE_243129 Chr6 22292133 22292132 + ORSgTEMT01601934 207 0.0010 (3/2999) 0 * * Os_TE_243124 Chr6 22289402 22289403 + HARB-1_OS 5166 0.0660 (189/2863) 0 * Os_TE_243123 Os_TE_243123 Chr6 22289400 22289399 - HARB-1_OS 5166 0.0650 (185/2846) 0 * Os_TE_243124 Os_TE_243109 Chr6 22288341 22288342 - RETRO2_LTR 12874 0.0578 (171/2957) 0 * * Os_TE_243101 Chr6 22287820 22287821 - COPIA2-LTR_OS 6433 0.0021 (6/2864) 0 * * Os_TE_243092 Chr6 22281818 22281819 + INDITTO 263 0.0003 (1/2989) 0 * Os_TE_243091 Os_TE_243091 Chr6 22281816 22281815 - INDITTO 263 0.0003 (1/2988) 0 * Os_TE_243092 Os_TE_243089 Chr6 22281615 22281614 - MUDRN4_OS 332 0.0010 (3/2993) 0 * * Os_TE_243088 Chr6 22281384 22281385 - HATOS1 3488 0.0010 (3/2995) 0 * Os_TE_243087 Os_TE_243087 Chr6 22281377 22281376 + QINNIU 528 0.0010 (3/2997) 0 * Os_TE_243088 Os_TE_243071 Chr6 22277763 22277764 - SZ-38 8643 0.0003 (1/2923) 0 * * Os_TE_243062 Chr6 22276244 22276245 + COPIA2-LTR_OS 6433 0.0010 (3/2931) 0 * * Os_TE_243059 Chr6 22275477 22275476 - TRSA_OS 353 0.0010 (1/982) -1 * * Os_TE_243052 Chr6 22270117 22270118 - RIREX_LTR 8828 0.0067 (20/2985) 0 * Os_TE_243051 Os_TE_243051 Chr6 22270113 22270112 + RIREX_LTR 8828 0.0064 (19/2984) 0 * Os_TE_243052 Os_TE_243044 Chr6 22265295 22265296 + RETROSAT4_LTR 13504 0.0570 (164/2875) 0 * Os_TE_243043 Os_TE_243043 Chr6 22265291 22265290 - SZ-35LTR 3853 0.0581 (168/2892) 0 * Os_TE_243044 Os_TE_243031 Chr6 22262712 22262713 - SZ-35LTR 3853 0.0015 (4/2707) 0 * Os_TE_243030 Os_TE_243030 Chr6 22262708 22262707 + RETROSAT4_LTR 13504 0.0011 (3/2730) 0 * Os_TE_243031 Os_TE_243026 Chr6 22262226 22262227 + RETRO2A_LTR 12895 0.0004 (1/2627) 0 * Os_TE_243025 Os_TE_243025 Chr6 22262222 22262221 - RETRO1_LTR 8314 0.0004 (1/2672) 0 * Os_TE_243026 Os_TE_243001 Chr6 22251665 22251664 - TYPEU1 380 0.0262 (78/2980) 0 * * Os_TE_242983 Chr6 22249106 22249105 + DEBOAT 110 0.1303 (361/2770) 0 * * Os_TE_242982 Chr6 22248873 22248872 + STOLA 369 0.0004 (1/2750) 0 * * Os_TE_242973 Chr6 22243371 22243370 - ORSgTEMT00900099 250 0.0270 (81/2996) 0 * Os_TE_242972 Os_TE_242972 Chr6 22243367 22243368 + ORSgTEMT00901798 232 0.0264 (79/2996) 0 * Os_TE_242973 Os_TE_242967 Chr6 22242757 22242758 - ORSgTETN00200001 10994 0.0093 (28/2995) 0 * Os_TE_242966 Os_TE_242966 Chr6 22242755 22242754 + SPMLIKE 10989 0.0090 (27/2996) 0 * Os_TE_242967 Os_TE_242964 Chr6 22242681 22242682 - MPING 430 0.0003 (1/2899) 0 * Os_TE_242963 Os_TE_242963 Chr6 22242679 22242678 + MPING 430 0.0003 (1/2904) 0 * Os_TE_242964 Os_TE_242959 Chr6 22240055 22240054 + ORSgTEMT00100272 356 0.0282 (84/2976) 0 * Os_TE_242958 Os_TE_242958 Chr6 22240054 22240055 + NDNA1TNA_OS 334 0.0263 (78/2965) 0 * Os_TE_242959 Os_TE_242957 Chr6 22239216 22239215 - TYPEH 309 0.0003 (1/2994) 0 * * Os_TE_242954 Chr6 22236230 22236231 - ORSiTERTOOT00333 4719 0.0010 (3/2991) 0 * Os_TE_242953 Os_TE_242953 Chr6 22236227 22236226 + ORSiTERTOOT00333 4719 0.0010 (3/2990) 0 * Os_TE_242954 Os_TE_242934 Chr6 22231323 22231324 - RIREX_LTR 8828 0.0003 (1/2987) 0 * * Os_TE_242923 Chr6 22228343 22228344 + NDNA1TNA_OS 334 0.0722 (84/1163) 0 * * Os_TE_242912 Chr6 22224191 22224192 + SPMLIKE 10989 0.0029 (3/1033) 0 * * Os_TE_242908 Chr6 22222337 22222338 - RETRO2_LTR 12874 0.0062 (18/2905) 0 * Os_TE_242907 Os_TE_242907 Chr6 22222333 22222332 + RETRO2_LTR 12874 0.0066 (19/2880) 0 * Os_TE_242908 Os_TE_242887 Chr6 22216210 22216209 - TRUNCATOR 2918 0.0606 (175/2889) 0 * Os_TE_242886 Os_TE_242886 Chr6 22216209 22216210 + TRUNCATOR 2918 0.0781 (226/2893) 0 * Os_TE_242887 Os_TE_242884 Chr6 22215660 22201746 - SZ-62LTR 3649 0.3207 (924/2881) 1 Intact * Os_TE_242859 Chr6 22198533 22198532 + HARB-1_OS 5166 0.0003 (1/2988) 0 * * Os_TE_242848 Chr6 22192193 22192192 - RIREX_LTR 8828 0.0003 (1/2938) 0 * * Os_TE_242822 Chr6 22180921 22180922 + CASLET 354 0.0265 (77/2911) 0 * Os_TE_242821 Os_TE_242821 Chr6 22180919 22180918 - CASLET 354 0.0288 (84/2919) 0 * Os_TE_242822 Os_TE_242819 Chr6 22180885 22180884 + MPING 430 0.0003 (1/2895) 0 * * Os_TE_242817 Chr6 22180844 22180843 - NDNA1TNA_OS 334 0.0003 (1/2946) 0 * * Os_TE_242810 Chr6 22179635 22179636 + RIREX_LTR 8828 0.0084 (23/2750) 0 * Os_TE_242809 Os_TE_242809 Chr6 22179631 22179630 - RIREX_LTR 8828 0.0067 (18/2692) 0 * Os_TE_242810 Os_TE_242797 Chr6 22178694 22178695 + MPING 430 0.0050 (15/2984) 0 * Os_TE_242796 Os_TE_242796 Chr6 22178692 22178691 - MPING 430 0.0057 (17/2975) 0 * Os_TE_242797 Os_TE_242795 Chr6 22178560 22178561 + ORSgTETNOOT00012 241 0.0268 (80/2980) 0 * Os_TE_242794 Os_TE_242794 Chr6 22178558 22178557 + ORSgTETNOOT00908 242 0.0279 (83/2980) 0 * Os_TE_242795 Os_TE_242738 Chr6 22157737 22157738 - SZ-9LTR 965 0.0007 (2/2916) 0 * Os_TE_242737 Os_TE_242737 Chr6 22157733 22157732 + SZ-9LTR 965 0.0007 (2/2914) 0 * Os_TE_242738 Os_TE_242719 Chr6 22147065 22147066 + SZ-4_LTR 5991 0.0007 (2/2998) 0 * Os_TE_242718 Os_TE_242718 Chr6 22147061 22147060 - SZ-4_LTR 5991 0.0007 (2/2996) 0 * Os_TE_242719 Os_TE_242713 Chr6 22141862 22141863 + MERMITEB 1610 0.0271 (81/2990) 0 * Os_TE_242712 Os_TE_242712 Chr6 22141858 22141857 + MERMITEB 1610 0.0261 (78/2985) 0 * Os_TE_242713 Os_TE_242708 Chr6 22141153 22141152 + HARB-1_OS 5166 0.0579 (164/2831) 0 * * Os_TE_242695 Chr6 22137091 22137090 - ORSgTEMT02400246 177 0.6126 (1822/2974) 0 * Os_TE_242694 Os_TE_242694 Chr6 22137087 22137088 + ORSgTEMT02400014 229 0.6135 (1830/2983) 0 * Os_TE_242695 Os_TE_242670 Chr6 22119007 22119006 - TYPEM 227 0.0797 (232/2912) 0 * * Os_TE_242665 Chr6 22118158 22118159 + NDNA1TNA_OS 334 0.0736 (185/2514) 0 * * Os_TE_242661 Chr6 22117830 22117831 + TRUNCATOR2_LTR 2904 0.0004 (1/2427) 0 * Os_TE_242660 Os_TE_242660 Chr6 22117826 22117825 - TRUNCATOR2_LTR 2904 0.0004 (1/2412) 0 * Os_TE_242661 Os_TE_242659 Chr6 22117576 22117577 + MDM2 312 0.0696 (198/2846) 0 * Os_TE_242658 Os_TE_242658 Chr6 22117568 22117567 + MDM2 312 0.0597 (169/2831) 0 * Os_TE_242659 Os_TE_242657 Chr6 22117465 22117466 - ORSgTEMT01600650 234 0.0784 (228/2909) 0 * Os_TE_242656 Os_TE_242656 Chr6 22117462 22117461 + ORSgTEMT01602029 239 0.0690 (199/2885) 0 * Os_TE_242657 Os_TE_242655 Chr6 22117459 22117460 + ORSgTEMT01601934 207 0.0791 (230/2909) 0 * * Os_TE_242646 Chr6 22116074 22116075 - MUDRN1_OS 764 0.0761 (227/2982) 0 * Os_TE_242645 Os_TE_242645 Chr6 22116066 22116065 + MUDRN1_OS 764 0.0653 (193/2956) 0 * Os_TE_242646 Os_TE_242615 Chr6 22099869 22099868 - RIREX_LTR 8828 0.0132 (38/2889) 0 * * Os_TE_242590 Chr6 22095234 22095235 - ORSgTEMT01600314 233 0.0003 (1/2955) 0 * * Os_TE_242585 Chr6 22094731 22094730 - RETROSAT2LTR 12796 0.0004 (1/2686) 0 * * Os_TE_242569 Chr6 22089993 22089994 - SZ-49 5594 0.0010 (3/2988) 0 * * Os_TE_242491 Chr6 22058083 22058084 - INDITTO 263 0.0076 (22/2910) 0 * * Os_TE_242432 Chr6 22033283 22032092 + SZ-44LTR 1408 0.8299 (2220/2675) 1 Intact Os_TE_242431 Os_TE_242431 Chr6 22032092 22033283 - SZ-44LTR 1408 0.7433 (2203/2964) 1 Intact Os_TE_242432 Os_TE_242430 Chr6 22030233 22030234 - COPIA2-LTR_OS 6433 0.0005 (1/2016) 0 * Os_TE_242429 Os_TE_242429 Chr6 22030229 22030228 + COPIA2-LTR_OS 6433 0.0004 (1/2675) 0 * Os_TE_242430 Os_TE_242426 Chr6 22029499 22029500 - RIREX_LTR 8828 0.0003 (1/2918) 0 * * Os_TE_242390 Chr6 22016299 22016300 + RETRO2_LTR 12874 0.1023 (300/2932) 0 * * Os_TE_242378 Chr6 22010046 22010047 + ENSPM4_OS 11610 0.0003 (1/2999) 0 * * Os_TE_242360 Chr6 22006463 22006464 + MPING 430 0.0003 (1/2991) 0 * Os_TE_242359 Os_TE_242359 Chr6 22006461 22006460 - MPING 430 0.0003 (1/2991) 0 * Os_TE_242360 Os_TE_242358 Chr6 22006181 22006180 + STOWAWAY51_OS 246 0.0040 (12/2974) 0 * Os_TE_242357 Os_TE_242357 Chr6 22006175 22006176 - STOWAWAY51_OS 246 0.0043 (13/2989) 0 * Os_TE_242358 Os_TE_242349 Chr6 22004494 22004493 + TRUNCATOR 2918 0.0017 (5/2988) 0 * Os_TE_242348 Os_TE_242348 Chr6 22004493 22004494 - TRUNCATOR 2918 0.0017 (5/2988) 0 * Os_TE_242349 Os_TE_242333 Chr6 22001634 22001635 + ORSiTERTOOT00028 8600 0.0010 (3/2991) 0 * * Os_TE_242317 Chr6 21997111 21997112 - TRUNCATOR 2918 0.0017 (5/2997) 0 * * Os_TE_242314 Chr6 21995747 21994397 + OSTE33 1012 0.5562 (1622/2916) 1 Intact * Os_TE_242278 Chr6 21980469 21980470 + RIRE3A_LTR 10580 0.0003 (1/2986) 0 * Os_TE_242277 Os_TE_242277 Chr6 21980465 21980464 - RIRE3A_LTR 10580 0.0003 (1/2974) 0 * Os_TE_242278 Os_TE_242276 Chr6 21979458 21979459 - RETRO1_LTR 8314 0.0003 (1/2984) 0 * * Os_TE_242260 Chr6 21973761 21973762 - CRM-LTR_OS 7749 0.0003 (1/2950) 0 * Os_TE_242259 Os_TE_242259 Chr6 21973757 21973756 + CRM-LTR_OS 7749 0.0003 (1/2926) 0 * Os_TE_242260 Os_TE_242256 Chr6 21972428 21972429 + RIREX_LTR 8828 0.0003 (1/2974) 0 * Os_TE_242255 Os_TE_242255 Chr6 21972424 21972423 - RIREX_LTR 8828 0.0007 (2/2962) 0 * Os_TE_242256 Os_TE_242254 Chr6 21972140 21970949 + CACTA-I 1124 0.6793 (2012/2962) 1 Intact Os_TE_242253 Os_TE_242253 Chr6 21970949 21972140 - CACTA-M 1129 0.8639 (1802/2086) 1 Intact Os_TE_242254 Os_TE_242240 Chr6 21962535 21962536 - STOWAWAY17_OS 259 0.2612 (777/2975) 0 * Os_TE_242239 Os_TE_242239 Chr6 21962534 21962533 + STOWAWAY17_OS 259 0.2622 (783/2986) 0 * Os_TE_242240 Os_TE_242218 Chr6 21958615 21958616 + TNR2A 152 0.0952 (285/2993) 0 * * Os_TE_242214 Chr6 21953756 21953755 + F1275 157 0.0023 (7/2985) 0 * * Os_TE_242200 Chr6 21950760 21950761 + ORSgTETNOOT00012 241 0.0013 (4/2974) 0 * Os_TE_242199 Os_TE_242199 Chr6 21950757 21950756 - ORSgTETNOOT02565 240 0.0013 (4/2975) 0 * Os_TE_242200 Os_TE_242185 Chr6 21947404 21947182 - ORSgTEMT00900923 248 0.7117 (2121/2980) 1 Intact * Os_TE_242184 Chr6 21947390 21947389 + ORSgTEMT02400014 229 0.0479 (103/2149) 0 * * Os_TE_242180 Chr6 21946786 21946785 - MuDR4_OS 7610 0.0003 (1/2980) 0 * * Os_TE_242179 Chr6 21946724 21946725 - CACTA-Q 2268 0.0003 (1/2957) 0 * * Os_TE_242168 Chr6 21944210 21944211 + ORSiTERTOOT00028 8600 0.0348 (103/2956) 0 * * Os_TE_242165 Chr6 21944134 21940120 + SZ-43LTR 4039 0.5953 (1731/2908) 1 Intact Os_TE_242163 Os_TE_242163 Chr6 21940120 21944134 - SZ-43LTR 4039 0.5858 (1689/2883) 1 Intact Os_TE_242165 Os_TE_242151 Chr6 21935755 21935754 + OSMUD1 5028 0.0402 (120/2984) 0 * * Os_TE_242150 Chr6 21934907 21934908 + OSMUD1 5028 0.0406 (121/2983) 0 * * Os_TE_242146 Chr6 21933086 21933085 + CACTA-H 1152 0.0003 (1/2989) 0 * Os_TE_242145 Os_TE_242145 Chr6 21933085 21933086 + ORSgTETN00200005 1121 0.0003 (1/2989) 0 * Os_TE_242146 Os_TE_242082 Chr6 21889849 21889848 - CENTRE 280 0.0003 (1/2970) 0 * * Os_TE_242079 Chr6 21889482 21889481 + ORSiTERTOOT00034 791 0.0028 (8/2891) 0 * * Os_TE_242071 Chr6 21887102 21887101 + ORSiTERT00400053 655 0.3272 (939/2870) 0 * * Os_TE_242070 Chr6 21886382 21885186 + OSTE15 1168 0.7202 (2111/2931) 1 Intact Os_TE_242069 Os_TE_242069 Chr6 21885183 21886382 - OSTE15 1168 0.7020 (2094/2983) 1 Intact Os_TE_242070 Os_TE_242066 Chr6 21884096 21883942 - STOWAWAY50_OS 174 0.7157 (2140/2990) 1 Intact Os_TE_242063 Os_TE_242063 Chr6 21883942 21884096 + STOWAWAY50_OS 174 0.7146 (2138/2992) 1 Intact Os_TE_242066 Os_TE_242032 Chr6 21860260 21859930 - ORSgTEMT00100547 344 0.7454 (2026/2718) 1 Intact Os_TE_242027 Os_TE_242027 Chr6 21859921 21860262 + OLO24C 356 0.7200 (2124/2950) 1 Intact Os_TE_242032 Os_TE_242009 Chr6 21845374 21845375 - SPMLIKE 10989 0.0003 (1/2989) 0 * Os_TE_242008 Os_TE_242008 Chr6 21845372 21845371 + SPMLIKE 10989 0.0003 (1/2988) 0 * Os_TE_242009 Os_TE_242004 Chr6 21844811 21844812 - COPIA2-LTR_OS 6433 0.0003 (1/2958) 0 * * Os_TE_242000 Chr6 21844617 21844616 - ORSgTEMT01600520 239 0.0180 (54/2992) 0 * Os_TE_241999 Os_TE_241999 Chr6 21844614 21844615 + ORSgTEMT01602083 237 0.0204 (52/2548) 0 * Os_TE_242000 Os_TE_241998 Chr6 21844533 21844534 - RIREX_LTR 8828 0.0007 (2/2981) 0 * Os_TE_241997 Os_TE_241997 Chr6 21844529 21844528 + RIREX_LTR 8828 0.0007 (2/2979) 0 * Os_TE_241998 Os_TE_241996 Chr6 21844317 21844316 + RIREX_LTR 8828 0.0041 (12/2947) 0 * Os_TE_241995 Os_TE_241995 Chr6 21844312 21844313 - RIREX_LTR 8828 0.0044 (13/2948) 0 * Os_TE_241996 Os_TE_241992 Chr6 21843284 21843283 - OSTE28 298 0.0005 (1/1951) -1 * * Os_TE_241980 Chr6 21837636 21837635 - ORSgTEMT01601432 239 0.0037 (11/2963) 0 * Os_TE_241979 Os_TE_241979 Chr6 21837633 21837634 + ORSgTEMT01602181 239 0.0040 (12/2965) 0 * Os_TE_241980 Os_TE_241956 Chr6 21831225 21831224 + ORSgTEMT01400031 216 0.0701 (209/2983) 0 * * Os_TE_241955 Chr6 21831224 21831225 + STOWAWAY9_OS 235 0.0373 (110/2951) 0 * * Os_TE_241948 Chr6 21828667 21828668 + DS-RICE3N 525 0.0127 (38/2984) 0 * * Os_TE_241923 Chr6 21808596 21808595 - DITAILA 257 0.2999 (882/2941) 0 * * Os_TE_241922 Chr6 21808359 21808360 + TWIFBIG 3567 0.0262 (76/2898) 0 * * Os_TE_241920 Chr6 21808229 21808230 - OSTE15 1168 0.2834 (811/2862) 0 * * Os_TE_241913 Chr6 21807595 21807596 + OSTE33 1012 0.0007 (2/2982) 0 * * Os_TE_241912 Chr6 21807371 21807372 + COPIA2-LTR_OS 6433 0.0003 (1/2969) 0 * Os_TE_241911 Os_TE_241911 Chr6 21807367 21807366 - COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_241912 Os_TE_241905 Chr6 21805148 21805147 + ORSgTETNOOT00908 242 0.3009 (881/2928) 0 * * Os_TE_241904 Chr6 21804774 21804569 - COWARD 200 0.7276 (2129/2926) 1 Intact * Os_TE_241900 Chr6 21800779 21800778 - STOWAWAY1_OS 149 0.2688 (801/2980) 0 * * Os_TE_241897 Chr6 21799725 21799726 + TWIF 586 0.0013 (4/2995) 0 * Os_TE_241896 Os_TE_241896 Chr6 21799718 21799717 - ORSiTETNOOT00200 3563 0.0013 (4/2996) 0 * Os_TE_241897 Os_TE_241894 Chr6 21799252 21799251 - RIREX_LTR 8828 0.0018 (4/2211) 0 * * Os_TE_241891 Chr6 21798474 21798473 + ORSgTEMT00500201 140 0.2637 (782/2965) 0 * Os_TE_241890 Os_TE_241890 Chr6 21798471 21798472 + ORSgTETNOOT01498 145 0.2654 (787/2965) 0 * Os_TE_241891 Os_TE_241889 Chr6 21798089 21798088 + STOWAWAY51_OS 246 0.0010 (3/2974) 0 * * Os_TE_241853 Chr6 21768860 21785315 - MuDR-5_OS 17471 0.6701 (1745/2604) 1 Intact * Os_TE_241852 Chr6 21768827 21768826 - DNAUN1_OS 408 0.0012 (3/2513) 0 * * Os_TE_241851 Chr6 21768688 21765116 + TWIFBIG 3567 0.6377 (1753/2749) 1 Intact Os_TE_241850 Os_TE_241850 Chr6 21765115 21768688 - ORSiTETNOOT00200 3563 0.5870 (1430/2436) 1 Intact Os_TE_241851 Os_TE_241848 Chr6 21763324 21763323 - HELITRON3_OS 12693 0.0401 (119/2968) 0 * Os_TE_241847 Os_TE_241847 Chr6 21763323 21763324 + HELITRON3_OS 12693 0.0400 (120/2997) 0 * Os_TE_241848 Os_TE_241846 Chr6 21762613 21762612 + ORSgTEMT01701663 106 0.2683 (803/2993) 0 * Os_TE_241845 Os_TE_241845 Chr6 21762610 21762611 - ORSgTEMT01702045 137 0.2664 (795/2984) 0 * Os_TE_241846 Os_TE_241838 Chr6 21756336 21756537 - ORSiTEMT01500006 227 0.7901 (2217/2806) 1 Intact * Os_TE_241826 Chr6 21748901 21749039 + ORSgTEMT00500476 150 0.7567 (2221/2935) 1 Intact * Os_TE_241824 Chr6 21748870 21748869 + ORSgTEMT01700768 151 0.0007 (2/2816) 0 * * Os_TE_241821 Chr6 21748836 21748835 - COPIA2-LTR_OS 6433 0.0003 (1/2955) 0 * * Os_TE_241820 Chr6 21748568 21748569 + ORSiTEMT06300001 333 0.0010 (3/2968) 0 * * Os_TE_241815 Chr6 21746348 21740284 + ORSiTERTOOT00028 8600 0.7122 (1938/2721) 1 Intact Os_TE_241808 Os_TE_241808 Chr6 21740284 21746348 - TRUNCATOR2_LTR 2904 0.7139 (1944/2723) 1 Intact Os_TE_241815 Os_TE_241783 Chr6 21728813 21728812 - CLOUD-7 495 0.0024 (7/2902) 0 * * Os_TE_241782 Chr6 21727989 21727990 - STOWAWAY47_OS 148 0.0819 (245/2992) 0 * Os_TE_241781 Os_TE_241781 Chr6 21727985 21727984 - STOWAWAY46_OS 154 0.0822 (246/2992) 0 * Os_TE_241782 Os_TE_241780 Chr6 21727177 21727176 + TREP215 239 0.1100 (327/2973) 0 * * Os_TE_241779 Chr6 21727009 21727159 - ORSgTEMT00502359 149 0.8999 (2660/2956) 1 Intact * Os_TE_241772 Chr6 21725871 21720706 + HARB-1_OS 5166 0.0236 (70/2961) 1 Intact Os_TE_241771 Os_TE_241771 Chr6 21720706 21725871 - HARB-1_OS 5166 0.0248 (73/2939) 1 Intact Os_TE_241772 Os_TE_241770 Chr6 21720655 21720314 - OLO24 345 0.8993 (2571/2859) 1 Intact Os_TE_241766 Os_TE_241766 Chr6 21720308 21720648 - OLO24 345 0.8918 (2581/2894) 1 Intact Os_TE_241770 Os_TE_241757 Chr6 21719477 21719478 + STOWAWAY20_OS 278 0.0309 (90/2914) 0 * * Os_TE_241751 Chr6 21718488 21718487 + STOWAWAY20_OS 278 0.0291 (87/2989) 0 * * Os_TE_241722 Chr6 21713719 21713720 + ORSgTETNOOT01846 238 0.0801 (239/2984) 0 * Os_TE_241721 Os_TE_241721 Chr6 21713718 21713717 - STOWAWAY17_OS 259 0.0747 (222/2970) 0 * Os_TE_241722 Os_TE_241719 Chr6 21711907 21711908 - SUSU 279 0.0230 (67/2914) 0 * Os_TE_241718 Os_TE_241718 Chr6 21711905 21711904 + ORSgTEMT05000092 279 0.0232 (67/2887) 0 * Os_TE_241719 Os_TE_241711 Chr6 21709342 21709343 - RIREX_LTR 8828 0.0024 (7/2974) 0 * Os_TE_241710 Os_TE_241710 Chr6 21709338 21709337 + RIREX_LTR 8828 0.0024 (7/2976) 0 * Os_TE_241711 Os_TE_241692 Chr6 21703509 21703510 - ORSgTEMT00501504 140 0.0314 (87/2770) 0 * * Os_TE_241691 Chr6 21703481 21703482 - CLOUD 734 0.0013 (4/2973) 0 * Os_TE_241690 Os_TE_241690 Chr6 21703473 21703472 - CLOUD 734 0.0003 (1/2894) 0 * Os_TE_241691 Os_TE_241687 Chr6 21702725 21702726 - COPI2_LTR 4733 0.0003 (1/2994) 0 * * Os_TE_241684 Chr6 21701896 21701897 - CLOUD 734 0.0017 (5/2989) 0 * Os_TE_241683 Os_TE_241683 Chr6 21701888 21701887 - CLOUD 734 0.0017 (5/2984) 0 * Os_TE_241684 Os_TE_241656 Chr6 21691330 21691331 - INDITTO 263 0.0013 (4/2980) 0 * Os_TE_241655 Os_TE_241655 Chr6 21691328 21691327 + INDITTO 263 0.0015 (4/2718) 0 * Os_TE_241656 Os_TE_241652 Chr6 21690732 21690397 + NDNA1TNA_OS 334 0.8778 (2565/2922) 1 Intact * Os_TE_241646 Chr6 21688762 21688761 + ORSgTEMT01601591 242 0.0004 (1/2831) 0 * * Os_TE_241631 Chr6 21683429 21683428 + COPI2_LTR 4733 0.0003 (1/2986) 0 * * Os_TE_241622 Chr6 21680422 21680421 - SC-3_LTR 5748 0.2025 (604/2983) 0 * * Os_TE_241618 Chr6 21678401 21678400 + ORSgTEMT01601122 212 0.1751 (523/2987) 0 * Os_TE_241617 Os_TE_241617 Chr6 21678398 21678399 + ORSgTEMT01601122 212 0.1721 (513/2981) 0 * Os_TE_241618 Os_TE_241616 Chr6 21678298 21678299 - COPIA2-LTR_OS 6433 0.0003 (1/2968) 0 * Os_TE_241615 Os_TE_241615 Chr6 21678294 21678293 + COPIA2-LTR_OS 6433 0.0003 (1/2923) 0 * Os_TE_241616 Os_TE_241612 Chr6 21677279 21677278 - ORMOSIA 482 0.2064 (545/2641) 0 * * Os_TE_241609 Chr6 21676721 21676617 - ORSgTEMT00501279 126 0.8038 (1930/2401) 1 Intact * Os_TE_241600 Chr6 21675508 21675509 - RIREX_LTR 8828 0.0071 (21/2949) 0 * Os_TE_241599 Os_TE_241599 Chr6 21675504 21675503 + RIREX_LTR 8828 0.0073 (21/2896) 0 * Os_TE_241600 Os_TE_241595 Chr6 21675283 21675432 - ORSgTEMT00500512 153 0.6417 (1884/2936) 1 Intact * Os_TE_241586 Chr6 21673978 21673979 - AMYLTP 383 0.0448 (128/2858) 0 * * Os_TE_241584 Chr6 21673893 21673892 + SPMLIKE 10989 0.0014 (4/2833) 0 * * Os_TE_241582 Chr6 21673524 21673523 - SINE03_OS 360 0.8908 (2455/2756) 0.92 * * Os_TE_241580 Chr6 21673073 21673072 + ORSgTEMT00901138 254 0.1552 (457/2945) 0 * * Os_TE_241575 Chr6 21671272 21671271 - TRUNCATOR2_LTR 2904 0.0004 (1/2488) 0 * * Os_TE_241569 Chr6 21670141 21670140 + ORSiTERTOOT00074 4935 0.0011 (3/2739) 0 * * Os_TE_241559 Chr6 21669617 21669417 + ORSgTETNOOT00072 203 0.7689 (1843/2397) 1 Intact * Os_TE_241557 Chr6 21669144 21669145 + ORSgTEMT00501023 149 0.2420 (576/2380) 0 * * Os_TE_241553 Chr6 21667541 21667540 - ORSgTEMT01600639 228 0.0371 (92/2483) 0 * * Os_TE_241552 Chr6 21667538 21667539 - ORSgTEMT01601208 238 0.2030 (604/2976) 0 * * Os_TE_241551 Chr6 21667345 21667038 + ORSgTEMT00100315 323 0.6939 (1902/2741) 1 Intact * Os_TE_241545 Chr6 21666397 21666190 - ORSgTEMT01400022 212 0.8222 (1928/2345) 1 Intact * Os_TE_241541 Chr6 21666112 21665793 + OLO24B 335 0.8856 (2385/2693) 1 Intact * Os_TE_241534 Chr6 21664096 21664097 + COPI1_LTR 4721 0.1875 (553/2950) 0 * Os_TE_241533 Os_TE_241533 Chr6 21664092 21664091 - SZ-25LTR 330 0.1921 (554/2884) 0 * Os_TE_241534 Os_TE_241532 Chr6 21663718 21663370 - ORSgTEMT01900024 348 0.6430 (1915/2978) 1 Intact Os_TE_241531 Os_TE_241531 Chr6 21663379 21663714 - ORSgTEMT01900052 340 0.6560 (1922/2930) 1 Intact Os_TE_241532 Os_TE_241529 Chr6 21663258 21663019 + ORSgTEMT00900253 248 0.6551 (1920/2931) 1 Intact * Os_TE_241519 Chr6 21660259 21660258 + ORSgTEMT01601934 207 0.0312 (92/2945) 0 * Os_TE_241518 Os_TE_241518 Chr6 21660258 21660259 + ORSgTEMT01601934 207 0.0315 (93/2957) 0 * Os_TE_241519 Os_TE_241470 Chr6 21643785 21643786 - COPIA2-LTR_OS 6433 0.0014 (4/2945) 0 * Os_TE_241469 Os_TE_241469 Chr6 21643781 21643780 + COPIA2-LTR_OS 6433 0.0010 (3/2955) 0 * Os_TE_241470 Os_TE_241465 Chr6 21640153 21640154 + ORSiTERTOOT00296 5553 0.0030 (9/2989) 0 * Os_TE_241464 Os_TE_241464 Chr6 21640149 21640148 - SC-3_LTR 5748 0.0030 (9/2990) 0 * Os_TE_241465 Os_TE_241463 Chr6 21638362 21638363 + ORSiTERTOOT00296 5553 0.0003 (1/2969) 0 * * Os_TE_241459 Chr6 21636934 21636935 - COWARD 200 0.0362 (108/2987) 0 * * Os_TE_241422 Chr6 21617783 21617784 + OLO24 345 0.0350 (104/2974) 0 * Os_TE_241421 Os_TE_241421 Chr6 21617781 21617780 - OLO24 345 0.0350 (103/2945) 0 * Os_TE_241422 Os_TE_241397 Chr6 21604013 21604014 + COPIA2-LTR_OS 6433 0.0020 (6/2983) 0 * Os_TE_241396 Os_TE_241396 Chr6 21604009 21604008 - COPIA2-LTR_OS 6433 0.0023 (7/2989) 0 * Os_TE_241397 Os_TE_241395 Chr6 21603688 21603689 + F1275 157 0.0020 (5/2527) 0 * * Os_TE_241393 Chr6 21603663 21603439 + ORSgTEMT02400041 225 0.5430 (1610/2965) 1 Intact Os_TE_241392 Os_TE_241392 Chr6 21603439 21603663 - ORSgTEMT02400148 214 0.5342 (1578/2954) 1 Intact Os_TE_241393 Os_TE_241384 Chr6 21596289 21596290 + STOLA 369 0.0659 (195/2958) 0 * Os_TE_241383 Os_TE_241383 Chr6 21596286 21596285 - INDITTO 263 0.0004 (1/2770) 0 * Os_TE_241384 Os_TE_241370 Chr6 21593083 21593084 + COPIO_LTR 11693 0.0004 (1/2781) 0 * * Os_TE_241359 Chr6 21591304 21591303 + COPIA2-LTR_OS 6433 0.0010 (3/2928) 0 * * Os_TE_241346 Chr6 21586637 21586636 + STOWAWAY51_OS 246 0.0191 (55/2883) 0 * * Os_TE_241327 Chr6 21584916 21584917 - RIRE2_LTR 11306 0.0433 (126/2911) 0 * Os_TE_241326 Os_TE_241326 Chr6 21584912 21584911 + RIRE2_LTR 11306 0.0424 (123/2901) 0 * Os_TE_241327 Os_TE_241320 Chr6 21583567 21583568 - ORSgTEMT01400014 209 0.0207 (57/2755) 0 * * Os_TE_241318 Chr6 21583286 21583285 - STOWAWAY51_OS 246 0.0004 (1/2743) 0 * Os_TE_241317 Os_TE_241317 Chr6 21583285 21583286 + TNR11 811 0.0004 (1/2667) 0 * Os_TE_241318 Os_TE_241302 Chr6 21581463 21581464 + ORSgTEMT00500885 144 0.0785 (233/2967) 0 * Os_TE_241301 Os_TE_241301 Chr6 21581462 21581461 + ORSgTEMT00501505 149 0.0767 (227/2960) 0 * Os_TE_241302 Os_TE_241281 Chr6 21578111 21578112 - RETRO1_LTR 8314 0.0003 (1/2913) 0 * Os_TE_241280 Os_TE_241280 Chr6 21578107 21578106 + RETRO2A_LTR 12895 0.0003 (1/2928) 0 * Os_TE_241281 Os_TE_241275 Chr6 21577784 21577783 - ORSgTEMT01400014 209 0.0749 (222/2962) 0 * Os_TE_241274 Os_TE_241274 Chr6 21577780 21577781 - ORSgTEMT01400038 210 0.0767 (226/2945) 0 * Os_TE_241275 Os_TE_241264 Chr6 21575519 21575520 + OSTE33 1012 0.2628 (759/2888) 0 * Os_TE_241263 Os_TE_241263 Chr6 21575510 21575509 - OSTE33 1012 0.2685 (775/2886) 0 * Os_TE_241264 Os_TE_241262 Chr6 21575484 21575483 + ORSgTETNOOT01930 140 0.0004 (1/2657) 0 * * Os_TE_241246 Chr6 21573823 21573824 - MuDR4_OS 7610 0.0895 (249/2783) 0 * Os_TE_241245 Os_TE_241245 Chr6 21573815 21573814 - MuDR4_OS 7610 0.0876 (244/2784) 0 * Os_TE_241246 Os_TE_241244 Chr6 21573501 21573500 - ORSgTEMT00100242 351 0.2732 (814/2979) 0 * Os_TE_241243 Os_TE_241243 Chr6 21573490 21573491 - NDNA1TNA_OS 334 0.2611 (771/2953) 0 * Os_TE_241244 Os_TE_241222 Chr6 21571478 21571479 - RETRO2_LTR 12874 0.0363 (106/2922) 0 * Os_TE_241221 Os_TE_241221 Chr6 21571474 21571473 + RETRO2_LTR 12874 0.0338 (98/2897) 0 * Os_TE_241222 Os_TE_241212 Chr6 21567893 21567892 + ORSgTEMT06100010 269 0.0796 (238/2991) 0 * * Os_TE_241211 Chr6 21567787 21567786 + ORSgTEMT01601591 242 0.0425 (127/2988) 0 * Os_TE_241210 Os_TE_241210 Chr6 21567781 21567782 + STOWAWAY51_OS 246 0.0424 (127/2992) 0 * Os_TE_241211 Os_TE_241205 Chr6 21563239 21563240 + COPI2_LTR 4733 0.0007 (2/2979) 0 * * Os_TE_241202 Chr6 21563102 21563101 + OSTONOR1_LTR 6440 0.0003 (1/2977) 0 * * Os_TE_241201 Chr6 21562831 21562596 + ORSgTETNOOT00908 242 0.5597 (1665/2975) 1 Intact * Os_TE_241157 Chr6 21552461 21552462 - SZ-22_LTR 4403 0.0024 (7/2972) 0 * * Os_TE_241132 Chr6 21547278 21547277 - OSTE15 1168 0.0948 (250/2636) 0 * * Os_TE_241114 Chr6 21543651 21543652 + ORSiCMCM00100019 2717 0.0003 (1/2996) 0 * Os_TE_241113 Os_TE_241113 Chr6 21543647 21543646 - TRUNCATOR2_LTR 2904 0.0003 (1/2996) 0 * Os_TE_241114 Os_TE_241109 Chr6 21542135 21542134 + HELITRON7_OS 10153 0.0003 (1/2994) 0 * Os_TE_241108 Os_TE_241108 Chr6 21542131 21542132 - HELITRON7_OS 10153 0.0003 (1/2992) 0 * Os_TE_241109 Os_TE_241088 Chr6 21533245 21533246 + COPIA2-LTR_OS 6433 0.0003 (1/2978) 0 * Os_TE_241087 Os_TE_241087 Chr6 21533241 21533240 - COPIA2-LTR_OS 6433 0.0003 (1/2981) 0 * Os_TE_241088 Os_TE_241033 Chr6 21499734 21499735 - ORSiTERT00200004 1997 0.0003 (1/2990) 0 * * Os_TE_241005 Chr6 21487072 21487073 + F569 228 0.0003 (1/2966) 0 * * Os_TE_241003 Chr6 21486256 21486257 + RETRO2_LTR 12874 0.0787 (234/2974) 0 * Os_TE_241002 Os_TE_241002 Chr6 21486252 21486251 - RETRO2_LTR 12874 0.0857 (256/2986) 0 * Os_TE_241003 Os_TE_240988 Chr6 21483402 21483401 - RETROFIT_LTR 4866 0.0004 (1/2347) 0 * * Os_TE_240966 Chr6 21476817 21464808 - TRUNCATOR 2918 0.4860 (1370/2819) 1 Intact Os_TE_240961 Os_TE_240961 Chr6 21464808 21476813 + TRUNCATOR 2918 0.5195 (1543/2970) 1 Intact Os_TE_240966 Os_TE_240959 Chr6 21464669 21464670 + INDITTO 263 0.1441 (417/2893) -1 * Os_TE_240958 Os_TE_240958 Chr6 21464668 21464667 - INDITTO 263 0.1448 (421/2908) 0 * Os_TE_240959 Os_TE_240933 Chr6 21453734 21453733 + ORSgTEMT01600283 240 0.0214 (62/2902) 0 * * Os_TE_240931 Chr6 21453498 21453499 + AMYLTP 383 0.2597 (741/2853) 0 * Os_TE_240930 Os_TE_240930 Chr6 21453493 21453492 - AMYLTP 383 0.2463 (713/2895) 0 * Os_TE_240931 Os_TE_240921 Chr6 21450957 21450956 - STOWAWAY45_OS 266 0.0027 (8/2968) 0 * Os_TE_240920 Os_TE_240920 Chr6 21450954 21450955 + STOWAWAY45_OS 266 0.0028 (8/2909) 0 * Os_TE_240921 Os_TE_240919 Chr6 21449568 21449569 + ORSgTERTOOT00009 12852 0.0097 (29/2991) 0 * Os_TE_240918 Os_TE_240918 Chr6 21449564 21449563 - RETRO2_LTR 12874 0.0107 (32/2985) 0 * Os_TE_240919 Os_TE_240916 Chr6 21448576 21448577 - ORSgTEMT00502237 143 0.0220 (64/2909) 0 * Os_TE_240915 Os_TE_240915 Chr6 21448575 21448574 + ORSgTEMT00500260 149 0.0235 (68/2893) 0 * Os_TE_240916 Os_TE_240849 Chr6 21420614 21420615 + MPING 430 0.0003 (1/2966) 0 * Os_TE_240848 Os_TE_240848 Chr6 21420612 21420611 - MPING 430 0.0003 (1/2968) 0 * Os_TE_240849 Os_TE_240832 Chr6 21413394 21413395 + MERMITEA 1710 0.0024 (7/2951) 0 * Os_TE_240831 Os_TE_240831 Chr6 21413386 21413385 - MERMITEA 1710 0.0020 (6/2955) 0 * Os_TE_240832 Os_TE_240830 Chr6 21412907 21411819 - RETRO2_LTR 12874 0.2218 (660/2975) 1 Solo_LTR Os_TE_240828 Os_TE_240828 Chr6 21411820 21412907 + ORSgTERTOOT00009 12852 0.2248 (670/2981) 1 Intact Os_TE_240830 Os_TE_240803 Chr6 21384868 21395256 - ENSPM4_OS 11610 0.2148 (636/2961) 1 Intact * Os_TE_240801 Chr6 21384511 21384512 - SZ-16LTR 728 0.0017 (5/2984) 0 * * Os_TE_240798 Chr6 21384049 21384050 + RETRO2A_LTR 12895 0.0003 (1/2943) 0 * Os_TE_240797 Os_TE_240797 Chr6 21384045 21384044 - RETRO1_LTR 8314 0.0003 (1/2946) 0 * Os_TE_240798 Os_TE_240781 Chr6 21380930 21380929 + RIREX_LTR 8828 0.0558 (166/2977) 0 * * Os_TE_240780 Chr6 21380918 21380917 + OSTE33 1012 0.0014 (4/2825) 0 * * Os_TE_240759 Chr6 21370607 21370606 + ORSgTETNOOT00908 242 0.0007 (2/2994) 0 * * Os_TE_240730 Chr6 21362704 21362705 + ORSgTEMT06100010 269 0.0036 (7/1946) 0 * Os_TE_240729 Os_TE_240729 Chr6 21362702 21362701 - ORSgTEMT06100010 269 0.0056 (6/1072) 0 * Os_TE_240730 Os_TE_240702 Chr6 21358821 21358822 + ORSgTEMT00500885 144 0.0003 (1/2940) 0 * * Os_TE_240692 Chr6 21354469 21354470 - SUSU 279 0.0014 (4/2906) 0 * Os_TE_240691 Os_TE_240691 Chr6 21354467 21354466 + ORSgTEMT05000092 279 0.0014 (4/2928) 0 * Os_TE_240692 Os_TE_240683 Chr6 21348748 21348749 - SC-8_LTR 4951 0.0007 (2/2971) 0 * Os_TE_240682 Os_TE_240682 Chr6 21348744 21348743 + SC-8_LTR 4951 0.0007 (2/2965) 0 * Os_TE_240683 Os_TE_240672 Chr6 21342255 21342256 - MUDRN1_OS 764 0.0208 (62/2986) 0 * * Os_TE_240645 Chr6 21335891 21335892 + STOWAWAY44_OS 240 0.0003 (1/2906) 0 * * Os_TE_240638 Chr6 21333345 21333346 + INDITTO 263 0.0030 (9/2986) 0 * Os_TE_240637 Os_TE_240637 Chr6 21333343 21333342 - INDITTO 263 0.0030 (9/2987) 0 * Os_TE_240638 Os_TE_240636 Chr6 21333118 21333119 + ORSiTERTOOT00074 4935 0.0144 (43/2990) 0 * Os_TE_240635 Os_TE_240635 Chr6 21333114 21333113 - ORSiTERTOOT00074 4935 0.0144 (43/2991) 0 * Os_TE_240636 Os_TE_240629 Chr6 21329866 21329867 - RIREX_LTR 8828 0.0003 (1/2988) 0 * Os_TE_240628 Os_TE_240628 Chr6 21329862 21329861 + RIREX_LTR 8828 0.0003 (1/2990) 0 * Os_TE_240629 Os_TE_240611 Chr6 21325817 21325818 + ORSgTEMT00800035 370 0.0021 (6/2797) 0 * Os_TE_240610 Os_TE_240610 Chr6 21325809 21325808 - AMYLTP 383 0.0003 (1/2956) 0 * Os_TE_240611 Os_TE_240608 Chr6 21325118 21325119 - COPIA2-LTR_OS 6433 0.0037 (11/2946) 0 * Os_TE_240607 Os_TE_240607 Chr6 21325114 21325113 + COPIA2-LTR_OS 6433 0.0065 (9/1395) 0 * Os_TE_240608 Os_TE_240590 Chr6 21321282 21321283 - RIREX_LTR 8828 0.0003 (1/2988) 0 * Os_TE_240589 Os_TE_240589 Chr6 21321278 21321277 + RIREX_LTR 8828 0.0003 (1/2990) 0 * Os_TE_240590 Os_TE_240582 Chr6 21319123 21319124 - SZ-58LTR 114 0.0017 (5/2966) 0 * Os_TE_240581 Os_TE_240581 Chr6 21319119 21319118 + SZ-58LTR 114 0.0017 (5/2963) 0 * Os_TE_240582 Os_TE_240580 Chr6 21318862 21318861 - TREP215 239 0.0020 (6/2944) 0 * Os_TE_240579 Os_TE_240579 Chr6 21318858 21318859 - ORSgTEMT01600559 234 0.0020 (6/2950) 0 * Os_TE_240580 Os_TE_240576 Chr6 21317941 21317942 - COPI2_LTR 4733 0.0003 (1/2992) 0 * Os_TE_240575 Os_TE_240575 Chr6 21317937 21317936 + COPI2_LTR 4733 0.0003 (1/2992) 0 * Os_TE_240576 Os_TE_240573 Chr6 21315767 21315766 + INDITTO 263 0.0003 (1/2971) 0 * * Os_TE_240567 Chr6 21312597 21312596 + CACTA-D 1038 0.0003 (1/2936) 0 * Os_TE_240566 Os_TE_240566 Chr6 21312596 21312597 - CACTA-M 1129 0.0003 (1/2932) 0 * Os_TE_240567 Os_TE_240521 Chr6 21298913 21298914 - TRUNCATOR2_LTR 2904 0.0003 (1/2977) 0 * Os_TE_240520 Os_TE_240520 Chr6 21298909 21298908 + TRUNCATOR2_LTR 2904 0.0003 (1/2976) 0 * Os_TE_240521 Os_TE_240499 Chr6 21287863 21287864 - SZ-30_LTR 6377 0.0021 (6/2838) 0 * * Os_TE_240497 Chr6 21287218 21287217 + RETRO1_LTR 8314 0.0097 (29/2992) 0 * * Os_TE_240496 Chr6 21287100 21287101 + RIREX_LTR 8828 0.0010 (3/2992) 0 * Os_TE_240495 Os_TE_240495 Chr6 21287096 21287095 - RIREX_LTR 8828 0.0007 (2/2961) 0 * Os_TE_240496 Os_TE_240494 Chr6 21286787 21286788 + EnSpm-13_OS 11171 0.0007 (2/2992) 0 * Os_TE_240493 Os_TE_240493 Chr6 21286785 21286784 - EnSpm-13_OS 11171 0.0007 (2/2991) 0 * Os_TE_240494 Os_TE_240490 Chr6 21283674 21283675 - ORSgTEMT01700029 143 0.0126 (37/2937) 0 * * Os_TE_240486 Chr6 21278665 21278666 - AMYLTP 383 0.0044 (13/2969) 0 * Os_TE_240485 Os_TE_240485 Chr6 21278657 21278656 + AMYLTP 383 0.0044 (13/2965) 0 * Os_TE_240486 Os_TE_240475 Chr6 21275306 21275307 + ORSgTEMT01700632 122 0.0017 (5/2919) 0 * * Os_TE_240470 Chr6 21274740 21274741 + NDNA1TNA_OS 334 0.0098 (29/2951) 0 * Os_TE_240469 Os_TE_240469 Chr6 21274738 21274737 - NDNA1TNA_OS 334 0.0098 (29/2971) 0 * Os_TE_240470 Os_TE_240468 Chr6 21274724 21274723 + ORSgTETNOOT00908 242 0.0003 (1/2927) 0 * * Os_TE_240466 Chr6 21274700 21274701 - INDITTO 263 0.0007 (2/2969) 0 * Os_TE_240465 Os_TE_240465 Chr6 21274698 21274697 + INDITTO 263 0.0007 (2/2967) 0 * Os_TE_240466 Os_TE_240461 Chr6 21272812 21272813 + COPIA1-LTR_OS 9292 0.0030 (9/2980) 0 * * Os_TE_240455 Chr6 21271339 21271340 + MERMITEA 1710 0.0018 (5/2823) 0 * * Os_TE_240441 Chr6 21267100 21260641 - COPIA2-LTR_OS 6433 0.8967 (2648/2953) 1 Intact Os_TE_240423 Os_TE_240423 Chr6 21260647 21267100 - ORSgTERT00100363 6446 0.8950 (2618/2925) 1 Intact Os_TE_240441 Os_TE_240411 Chr6 21259858 21259859 + RIREX_LTR 8828 0.0020 (6/2955) 0 * Os_TE_240410 Os_TE_240410 Chr6 21259854 21259853 - RIREX_LTR 8828 0.0023 (7/2984) 0 * Os_TE_240411 Os_TE_240408 Chr6 21259245 21259246 + ORSgTETNOOT00323 125 0.0027 (8/2997) 0 * Os_TE_240407 Os_TE_240407 Chr6 21259242 21259241 - ORSgTETNOOT00118 134 0.0023 (7/2994) 0 * Os_TE_240408 Os_TE_240376 Chr6 21251325 21251326 - ORSgTEMT00502154 143 0.0003 (1/2942) 0 * * Os_TE_240370 Chr6 21250941 21249801 - ORSgTETN00200001 10994 0.3036 (858/2826) 1 Intact * Os_TE_240360 Chr6 21248128 21248127 - ORSgTEMT00100592 158 0.0003 (1/2972) 0 * * Os_TE_240343 Chr6 21244735 21244736 - ORSgTETN00200001 10994 0.0018 (5/2837) 0 * Os_TE_240342 Os_TE_240342 Chr6 21244733 21244732 + SPMLIKE 10989 0.0014 (4/2834) 0 * Os_TE_240343 Os_TE_240335 Chr6 21243251 21243252 + ORSgTEMT00901862 245 0.0010 (3/2974) 0 * * Os_TE_240334 Chr6 21243063 21243062 - OLO24 345 0.0020 (6/2993) 0 * * Os_TE_240315 Chr6 21239415 21239416 + RETRO2_LTR 12874 0.0020 (6/2983) 0 * * Os_TE_240291 Chr6 21233711 21233710 - ORSgTEMT01600345 238 0.0017 (5/2942) 0 * Os_TE_240290 Os_TE_240290 Chr6 21233708 21233709 + ORSgTEMT01602051 240 0.0013 (4/2968) 0 * Os_TE_240291 Os_TE_240289 Chr6 21233106 21233107 - ENSPM4_OS 11610 0.0014 (4/2867) 0 * * Os_TE_240263 Chr6 21210838 21210839 - NDNA2TNA_OS 346 0.0020 (6/2986) 0 * * Os_TE_240253 Chr6 21207286 21207287 - CASTAWAY 364 0.1041 (311/2987) 0 * Os_TE_240252 Os_TE_240252 Chr6 21207284 21207283 + ORSgTEMT00600120 364 0.1044 (312/2988) 0 * Os_TE_240253 Os_TE_240250 Chr6 21206638 21206639 - SZ-22_LTR 4403 0.0007 (2/2991) 0 * Os_TE_240249 Os_TE_240249 Chr6 21206634 21206633 + ORSiTERTOOT00034 791 0.0007 (2/2991) 0 * Os_TE_240250 Os_TE_240245 Chr6 21204253 21204254 - TRUNCATOR2_LTR 2904 0.0003 (1/2903) 0 * * Os_TE_240211 Chr6 21191838 21191839 + COPI2_LTR 4733 0.0003 (1/2995) 0 * * Os_TE_240192 Chr6 21184479 21184480 + JINHUA 479 0.0095 (25/2637) 0 * * Os_TE_240180 Chr6 21180704 21180705 - ORSgTETN00200001 10994 0.0037 (11/2943) 0 * Os_TE_240179 Os_TE_240179 Chr6 21180702 21180701 + SPMLIKE 10989 0.0054 (16/2947) 0 * Os_TE_240180 Os_TE_240172 Chr6 21179545 21179544 + TRSA_OS 353 0.0004 (1/2399) 0 * * Os_TE_240077 Chr6 21135642 21135643 + COPI2_LTR 4733 0.0007 (2/2990) 0 * Os_TE_240076 Os_TE_240076 Chr6 21135638 21135637 - COPI2_LTR 4733 0.0007 (2/2992) 0 * Os_TE_240077 Os_TE_240075 Chr6 21135629 21135630 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_240074 Os_TE_240074 Chr6 21135625 21135624 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_240075 Os_TE_240045 Chr6 21123904 21123905 + MPING 430 0.0003 (1/2959) 0 * Os_TE_240044 Os_TE_240044 Chr6 21123902 21123901 - MPING 430 0.0003 (1/2936) 0 * Os_TE_240045 Os_TE_240042 Chr6 21123892 21123891 + ORSgTEMT01601591 242 0.0024 (7/2964) 0 * Os_TE_240041 Os_TE_240041 Chr6 21123886 21123887 + STOWAWAY51_OS 246 0.0024 (7/2970) 0 * Os_TE_240042 Os_TE_240029 Chr6 21120605 21120604 - STOWAWAY51_OS 246 0.0003 (1/2991) 0 * Os_TE_240028 Os_TE_240028 Chr6 21120602 21120603 - STOWAWAY51_OS 246 0.0003 (1/2995) 0 * Os_TE_240029 Os_TE_240014 Chr6 21101293 21100685 - JOUZHENA 607 0.2952 (869/2944) 1 Intact Os_TE_240013 Os_TE_240013 Chr6 21100685 21101293 + JOUZHENA 607 0.2888 (846/2929) 1 Intact Os_TE_240014 Os_TE_239996 Chr6 21093418 21093419 + ORSgTEMT01701591 154 0.0105 (31/2956) 0 * Os_TE_239995 Os_TE_239995 Chr6 21093417 21093416 - STOWAWAY1_OS 149 0.0115 (34/2962) 0 * Os_TE_239996 Os_TE_239990 Chr6 21091513 21091514 - ORSgTETN00200001 10994 0.0020 (6/2965) 0 * * Os_TE_239965 Chr6 21082398 21082397 - COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * * Os_TE_239937 Chr6 21071441 21071442 - STOWAWAY13_OS 251 0.0188 (56/2986) 0 * * Os_TE_239930 Chr6 21070015 21070016 - ORSgTETNOOT02000 263 0.0009 (2/2235) 0 * * Os_TE_239922 Chr6 21064664 21064663 - ORSgTEMT00502258 148 0.0185 (55/2965) 0 * * Os_TE_239918 Chr6 21060742 21060743 - COPI1_LTR 4721 0.0208 (62/2975) 0 * Os_TE_239917 Os_TE_239917 Chr6 21060738 21060737 + COPI1_LTR 4721 0.0034 (9/2648) 0 * Os_TE_239918 Os_TE_239916 Chr6 21060287 21060288 - ORSgTEMT01602119 229 0.0201 (60/2982) 0 * * Os_TE_239915 Chr6 21060212 21060211 + ORSiTERTOOT00226 792 0.0016 (2/1240) 0 * * Os_TE_239912 Chr6 21055477 21052329 - RIRE3_LTR 12054 0.2910 (855/2938) 1 Solo_LTR Os_TE_239911 Os_TE_239911 Chr6 21052329 21055477 + RIRE3_LTR 12054 0.2818 (824/2924) 1 Solo_LTR Os_TE_239912 Os_TE_239874 Chr6 21043020 21043019 + ORSgTEMT01601591 242 0.0007 (2/2843) 0 * * Os_TE_239808 Chr6 21025622 21025621 - INDITTO 263 0.0007 (2/2874) 0 * * Os_TE_239793 Chr6 21020358 21020359 - NDNA1TNA_OS 334 0.0974 (289/2967) 0 * Os_TE_239792 Os_TE_239792 Chr6 21020357 21020356 + NDNA1TNA_OS 334 0.1024 (304/2969) 0 * Os_TE_239793 Os_TE_239791 Chr6 21019353 21019352 - RETROSAT2LTR 12796 0.0003 (1/2970) 0 * * Os_TE_239784 Chr6 21018285 21018286 + MPING 430 0.0003 (1/2987) 0 * Os_TE_239783 Os_TE_239783 Chr6 21018283 21018282 - MPING 430 0.0003 (1/2986) 0 * Os_TE_239784 Os_TE_239764 Chr6 21011088 21011089 - MPING 430 0.0031 (9/2943) 0 * Os_TE_239763 Os_TE_239763 Chr6 21011086 21011085 + MPING 430 0.0031 (9/2933) 0 * Os_TE_239764 Os_TE_239759 Chr6 21010200 21010199 - COPI2_LTR 4733 0.0003 (1/2975) 0 * * Os_TE_239753 Chr6 21008087 21008088 + RIREX_LTR 8828 0.0003 (1/2982) 0 * Os_TE_239752 Os_TE_239752 Chr6 21008083 21008082 - RIREX_LTR 8828 0.0003 (1/2977) 0 * Os_TE_239753 Os_TE_239726 Chr6 21002875 21002876 + RIREX_LTR 8828 0.0003 (1/2998) 0 * Os_TE_239725 Os_TE_239725 Chr6 21002871 21002870 - RIREX_LTR 8828 0.0003 (1/2996) 0 * Os_TE_239726 Os_TE_239724 Chr6 21002761 21002762 + ORSgTETNOOT01998 254 0.1961 (585/2983) 0 * Os_TE_239723 Os_TE_239723 Chr6 21002759 21002758 - ORSgTETNOOT00754 253 0.1973 (590/2991) 0 * Os_TE_239724 Os_TE_239722 Chr6 21002709 21002710 + RETRO2A_LTR 12895 0.0007 (2/2986) 0 * Os_TE_239721 Os_TE_239721 Chr6 21002705 21002704 - RETRO1_LTR 8314 0.0007 (2/2988) 0 * Os_TE_239722 Os_TE_239692 Chr6 20995094 20995093 - ORSiCMCM00100014 10855 0.0716 (128/1788) 0 * * Os_TE_239664 Chr6 20984492 20984493 + COPIA2-LTR_OS 6433 0.0010 (3/2976) 0 * Os_TE_239663 Os_TE_239663 Chr6 20984488 20984487 - COPIA2-LTR_OS 6433 0.0010 (3/2983) 0 * Os_TE_239664 Os_TE_239661 Chr6 20984096 20982503 + MERMITE18E 1528 0.8839 (2641/2988) 1 Intact Os_TE_239659 Os_TE_239659 Chr6 20982501 20984095 + MERMITE18E 1528 0.8834 (2643/2992) 1 Intact Os_TE_239661 Os_TE_239657 Chr6 20981574 20981575 - COPIA2-LTR_OS 6433 0.0178 (53/2981) 0 * Os_TE_239656 Os_TE_239656 Chr6 20981570 20981569 + COPIA2-LTR_OS 6433 0.0178 (53/2977) 0 * Os_TE_239657 Os_TE_239646 Chr6 20975396 20975395 - ORSiTERT00100062 5674 0.0003 (1/2993) 0 * * Os_TE_239635 Chr6 20970558 20970557 - RETRO2_LTR 12874 0.0003 (1/2975) 0 * * Os_TE_239598 Chr6 20954102 20954103 + ORSiTERTOOT00226 792 0.0003 (1/2954) 0 * Os_TE_239597 Os_TE_239597 Chr6 20954098 20954097 - SZ-22_LTR 4403 0.0003 (1/2971) 0 * Os_TE_239598 Os_TE_239590 Chr6 20950406 20950407 + ORSiTERTOOT00296 5553 0.0003 (1/2984) 0 * Os_TE_239589 Os_TE_239589 Chr6 20950402 20950401 - SC-3_LTR 5748 0.0003 (1/2985) 0 * Os_TE_239590 Os_TE_239566 Chr6 20936173 20936172 + ORSgTEMT01701871 163 0.4048 (1133/2799) 0 * * Os_TE_239565 Chr6 20935963 20935964 - ORSgTEMT01602637 232 0.0029 (5/1754) 0 * * Os_TE_239564 Chr6 20935648 20935649 + COPI2_LTR 4733 0.0047 (14/2990) 0 * Os_TE_239563 Os_TE_239563 Chr6 20935644 20935643 - COPI2_LTR 4733 0.0033 (10/2990) 0 * Os_TE_239564 Os_TE_239560 Chr6 20933348 20932155 - SZ-5LTR 1223 0.4861 (1452/2987) 1 Intact Os_TE_239559 Os_TE_239559 Chr6 20932155 20933348 + COPIA1-LTR_OS 9292 0.4848 (1452/2995) 1 Solo_LTR Os_TE_239560 Os_TE_239557 Chr6 20931108 20931109 + STOWAWAY51_OS 246 0.0797 (114/1430) 0 * * Os_TE_239556 Chr6 20929992 20929993 + COPI2_LTR 4733 0.0003 (1/2996) 0 * * Os_TE_239508 Chr6 20908039 20908040 - JOUZHENA 607 0.0572 (55/961) 0 * Os_TE_239507 Os_TE_239507 Chr6 20908032 20908031 + JOUZHENA 607 0.0628 (59/939) 0 * Os_TE_239508 Os_TE_239503 Chr6 20907174 20907287 - ORSgTEMT01701299 116 0.4044 (952/2354) 1 Intact * Os_TE_239483 Chr6 20895692 20891280 - MuDR4_OS 7610 0.2575 (769/2986) 1 Intact Os_TE_239482 Os_TE_239482 Chr6 20891279 20895692 - MuDR4_OS 7610 0.2599 (777/2990) 1 Intact Os_TE_239483 Os_TE_239480 Chr6 20890032 20890033 + OsSN3 183 0.0180 (54/2992) 0 * * Os_TE_239470 Chr6 20887590 20887589 - MuDR3_OS 8604 0.0121 (36/2970) 0 * * Os_TE_239466 Chr6 20886293 20886292 - ORSgTEMT01602170 250 0.0198 (49/2471) 0 * * Os_TE_239452 Chr6 20879207 20879206 - ORSgTERT00201216 11284 0.0007 (2/2899) 0 * * Os_TE_239439 Chr6 20874577 20874578 + ORSgTEMT01600288 233 0.0007 (2/2955) 0 * * Os_TE_239432 Chr6 20871982 20871981 - CRATA 4786 0.0189 (56/2963) 0 * Os_TE_239431 Os_TE_239431 Chr6 20871932 20871933 + ORSgTEMT00502327 143 0.0183 (54/2955) 0 * Os_TE_239432 Os_TE_239427 Chr6 20871172 20871173 + MPING 430 0.0010 (3/2996) 0 * Os_TE_239426 Os_TE_239426 Chr6 20871170 20871169 - MPING 430 0.0010 (3/2994) 0 * Os_TE_239427 Os_TE_239424 Chr6 20871081 20871080 - ORSgTEMT01400038 210 0.0143 (42/2945) 0 * Os_TE_239423 Os_TE_239423 Chr6 20871076 20871077 - ORSgTEMT01400022 212 0.0144 (43/2994) 0 * Os_TE_239424 Os_TE_239415 Chr6 20868592 20868593 + HARB-1_OS 5166 0.0067 (20/2994) 0 * Os_TE_239414 Os_TE_239414 Chr6 20868590 20868589 - HARB-1_OS 5166 0.0068 (20/2952) 0 * Os_TE_239415 Os_TE_239408 Chr6 20868138 20868139 + ORSgTETNOOT00072 203 0.0182 (54/2975) 0 * Os_TE_239407 Os_TE_239407 Chr6 20868129 20868128 + TESS 244 0.0185 (55/2975) 0 * Os_TE_239408 Os_TE_239387 Chr6 20865886 20865885 - ORSgTEMT01602413 239 0.0147 (44/2997) 0 * Os_TE_239386 Os_TE_239386 Chr6 20865883 20865884 - ORSgTEMT01602277 239 0.0144 (43/2993) 0 * Os_TE_239387 Os_TE_239375 Chr6 20861491 20861490 - ORSgTETN00200001 10994 0.0003 (1/2997) 0 * * Os_TE_239357 Chr6 20857311 20857310 - RETROSAT3_LTR 11537 0.0144 (43/2989) 0 * * Os_TE_239353 Chr6 20856825 20856826 - ORSgTEMT00900498 242 0.0138 (40/2899) 0 * Os_TE_239352 Os_TE_239352 Chr6 20856823 20856822 + ORSgTEMT00901844 250 0.0150 (44/2928) 0 * Os_TE_239353 Os_TE_239351 Chr6 20856819 20856820 - ORSgTEMT00900099 250 0.0134 (39/2910) 0 * * Os_TE_239346 Chr6 20856197 20856196 + RIREX_LTR 8828 0.4059 (1085/2673) 0 * * Os_TE_239336 Chr6 20852644 20852645 - SC-3_LTR 5748 0.0003 (1/2995) 0 * * Os_TE_239323 Chr6 20836554 20848311 + RETROSAT3_LTR 11537 0.0797 (237/2974) 1 Intact * Os_TE_239293 Chr6 20821447 20821446 + ORSgTEMT01601525 239 0.0003 (1/2946) 0 * * Os_TE_239281 Chr6 20817316 20817317 - COPIA2-LTR_OS 6433 0.0007 (2/2946) 0 * Os_TE_239280 Os_TE_239280 Chr6 20817312 20817311 + COPIA2-LTR_OS 6433 0.0007 (2/2940) 0 * Os_TE_239281 Os_TE_239279 Chr6 20816847 20816848 + ORSgTETNOOT01930 140 0.0017 (5/2983) 0 * * Os_TE_239262 Chr6 20811012 20811011 + ORSiTERT00200145 12238 0.0017 (5/2938) 0 * * Os_TE_239259 Chr6 20810204 20810203 - STOWAWAY51_OS 246 0.0003 (1/2989) 0 * Os_TE_239258 Os_TE_239258 Chr6 20810198 20810199 + STOWAWAY51_OS 246 0.0003 (1/2982) 0 * Os_TE_239259 Os_TE_239242 Chr6 20803633 20803634 - RETRO1_LTR 8314 0.1996 (572/2866) 0 * Os_TE_239241 Os_TE_239241 Chr6 20803629 20803628 + RETRO2A_LTR 12895 0.2062 (593/2876) 0 * Os_TE_239242 Os_TE_239200 Chr6 20785737 20785738 + COPI2_LTR 4733 0.0003 (1/2866) 0 * * Os_TE_239112 Chr6 20755489 20755490 + RETRO2A_LTR 12895 0.1035 (303/2928) 0 * * Os_TE_239107 Chr6 20754521 20754522 - COPI2_LTR 4733 0.0004 (1/2810) 0 * Os_TE_239106 Os_TE_239106 Chr6 20754517 20754516 + COPI2_LTR 4733 0.0004 (1/2831) 0 * Os_TE_239107 Os_TE_239090 Chr6 20747842 20747843 - RETRO1_LTR 8314 0.0004 (1/2828) 0 * * Os_TE_239067 Chr6 20737984 20744418 - COPIA2-LTR_OS 6433 0.1084 (273/2519) 1 Intact * Os_TE_239063 Chr6 20735174 20735175 + RIREX_LTR 8828 0.0305 (55/1801) 0 * Os_TE_239062 Os_TE_239062 Chr6 20735170 20735169 - RIREX_LTR 8828 0.0305 (55/1806) 0 * Os_TE_239063 Os_TE_239060 Chr6 20732726 20732725 + RIREX_LTR 8828 0.0004 (1/2811) -1 * * Os_TE_239032 Chr6 20721422 20721421 + ORSgTEMT01701861 113 0.0007 (2/2982) 0 * * Os_TE_239028 Chr6 20717718 20717719 + OSMU5 4881 0.1693 (498/2941) 0 * Os_TE_239027 Os_TE_239027 Chr6 20717710 20717709 + OSMU5 4881 0.1733 (513/2960) 0 * Os_TE_239028 Os_TE_239005 Chr6 20710306 20710305 - RETROSAT4_LTR 13504 0.0017 (5/2965) 0 * * Os_TE_238994 Chr6 20707933 20707932 + STOWAWAY44_OS 240 0.0003 (1/2999) 0 * Os_TE_238993 Os_TE_238993 Chr6 20707930 20707931 - STOWAWAY44_OS 240 0.0003 (1/2994) 0 * Os_TE_238994 Os_TE_238975 Chr6 20700044 20700045 + ORSiTERTOOT00020 2547 0.0147 (44/2995) 0 * Os_TE_238974 Os_TE_238974 Chr6 20700040 20700039 - OSCOPIA1_LTR 4754 0.0150 (45/2995) 0 * Os_TE_238975 Os_TE_238972 Chr6 20698797 20697571 + SZLTR 1249 0.3338 (764/2289) 1 Intact Os_TE_238971 Os_TE_238971 Chr6 20697571 20698795 - RETRO2_LTR 12874 0.3349 (772/2305) 1 Solo_LTR Os_TE_238972 Os_TE_238966 Chr6 20696074 20696073 - SINE9_OS 293 0.0014 (4/2832) 0 * * Os_TE_238937 Chr6 20676104 20676105 - OSTE15 1168 0.1768 (504/2850) 0 * Os_TE_238936 Os_TE_238936 Chr6 20676101 20676100 + OSTE15 1168 0.1735 (494/2847) 0 * Os_TE_238937 Os_TE_238926 Chr6 20670739 20670740 - SC-3_LTR 5748 0.0003 (1/2980) 0 * Os_TE_238925 Os_TE_238925 Chr6 20670735 20670734 + ORSiTERTOOT00296 5553 0.0003 (1/2979) 0 * Os_TE_238926 Os_TE_238890 Chr6 20643274 20643275 - TRUNCATOR 2918 0.0097 (29/2978) 0 * * Os_TE_238889 Chr6 20642894 20642895 + MuDR4_OS 7610 0.4286 (1270/2963) 0 * * Os_TE_238861 Chr6 20631542 20631543 + RIREX_LTR 8828 0.0017 (5/2996) 0 * Os_TE_238860 Os_TE_238860 Chr6 20631538 20631537 - RIREX_LTR 8828 0.0017 (5/2998) 0 * Os_TE_238861 Os_TE_238814 Chr6 20598830 20598831 + RIREX_LTR 8828 0.0011 (1/918) 0 * Os_TE_238813 Os_TE_238813 Chr6 20598826 20598825 - RIREX_LTR 8828 0.0011 (1/925) 0 * Os_TE_238814 Os_TE_238809 Chr6 20596984 20596985 - ENSPM5_OS 9581 0.5755 (499/867) 0 * * Os_TE_238782 Chr6 20582673 20582674 - COPIA2-LTR_OS 6433 0.0193 (57/2958) 0 * Os_TE_238781 Os_TE_238781 Chr6 20582669 20582668 + COPIA2-LTR_OS 6433 0.0196 (58/2958) 0 * Os_TE_238782 Os_TE_238780 Chr6 20582667 20582668 + COPIA2-LTR_OS 6433 0.0003 (1/2958) 0 * Os_TE_238779 Os_TE_238779 Chr6 20582663 20582662 - COPIA2-LTR_OS 6433 0.0003 (1/2908) 0 * Os_TE_238780 Os_TE_238757 Chr6 20572588 20572587 - RIRE2_LTR 11306 0.0017 (5/2975) 0 * * Os_TE_238744 Chr6 20571019 20571018 - RIREX_LTR 8828 0.0161 (48/2987) 0 * * Os_TE_238658 Chr6 20543113 20543114 - RIRE3A_LTR 10580 0.0017 (5/2970) 0 * Os_TE_238657 Os_TE_238657 Chr6 20543109 20543108 + RIRE3A_LTR 10580 0.0013 (4/2977) 0 * Os_TE_238658 Os_TE_238555 Chr6 20503233 20503232 + STOWAWAY11_OS 292 0.0448 (134/2992) 0 * * Os_TE_238550 Chr6 20500557 20500558 - ORSgTEMT01602603 239 0.2062 (608/2949) 0 * * Os_TE_238533 Chr6 20492673 20492674 - RIREX_LTR 8828 0.0003 (1/2975) 0 * Os_TE_238532 Os_TE_238532 Chr6 20492669 20492668 + RIREX_LTR 8828 0.0003 (1/2977) 0 * Os_TE_238533 Os_TE_238525 Chr6 20486296 20486295 + ORSgTETNOOT02577 232 0.0441 (131/2972) 0 * * Os_TE_238519 Chr6 20481093 20481092 - STOWAWAY51_OS 246 0.0003 (1/2993) 0 * * Os_TE_238515 Chr6 20480712 20480713 + HARB-1_OS 5166 0.0013 (4/2996) 0 * Os_TE_238514 Os_TE_238514 Chr6 20480710 20480709 - HARB-1_OS 5166 0.0013 (4/2997) 0 * Os_TE_238515 Os_TE_238452 Chr6 20454461 20454462 + RIREX_LTR 8828 0.0003 (1/2987) 0 * * Os_TE_238436 Chr6 20447888 20447889 + COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * Os_TE_238435 Os_TE_238435 Chr6 20447884 20447883 - COPIA2-LTR_OS 6433 0.0003 (1/2980) 0 * Os_TE_238436 Os_TE_238402 Chr6 20439046 20439047 + COPIA2-LTR_OS 6433 0.0131 (39/2983) 0 * Os_TE_238401 Os_TE_238401 Chr6 20439042 20439041 - COPIA2-LTR_OS 6433 0.0134 (40/2979) 0 * Os_TE_238402 Os_TE_238316 Chr6 20402991 20402992 - TESSBIG 4057 0.0074 (22/2990) 0 * Os_TE_238315 Os_TE_238315 Chr6 20402984 20402983 + TESSBIG 4057 0.0077 (23/2989) 0 * Os_TE_238316 Os_TE_238164 Chr6 20331898 20331897 - SEVERIN-2 1952 0.7352 (1688/2296) 0 * * Os_TE_238052 Chr6 20265003 20265002 + F569 228 0.0183 (48/2623) 0 * * Os_TE_238013 Chr6 20249396 20249397 + STOLAB 312 0.0179 (48/2686) 0 * Os_TE_238012 Os_TE_238012 Chr6 20249394 20249393 - STOLAB 312 0.0171 (46/2684) 0 * Os_TE_238013 Os_TE_238007 Chr6 20247125 20247124 - ORSgTEMT00501356 145 0.0150 (45/2991) 0 * * Os_TE_238005 Chr6 20247109 20247108 - ORSgTETNOOT02417 265 0.0003 (1/2957) 0 * * Os_TE_237993 Chr6 20244704 20244705 + ENSPM_OS 9843 0.0135 (40/2959) 0 * Os_TE_237992 Os_TE_237992 Chr6 20244702 20244701 - ENSPM_OS 9843 0.0152 (45/2956) 0 * Os_TE_237993 Os_TE_237991 Chr6 20244667 20244668 - SZ-44LTR 1408 0.0082 (24/2928) 0 * Os_TE_237990 Os_TE_237990 Chr6 20244663 20244662 + SZ-44LTR 1408 0.0085 (25/2929) 0 * Os_TE_237991 Os_TE_237984 Chr6 20243709 20243708 - ORSgTEMT00901723 248 0.0235 (70/2980) 0 * * Os_TE_237980 Chr6 20233563 20233564 - ORSgTETN00200001 10994 0.0378 (107/2828) 0 * * Os_TE_237974 Chr6 20230906 20230905 + COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * * Os_TE_237971 Chr6 20229152 20229032 + TNR2A 152 0.3085 (894/2898) 1 Intact Os_TE_237970 Os_TE_237970 Chr6 20229032 20229150 - TNR2A 152 0.3168 (894/2822) 1 Intact Os_TE_237971 Os_TE_237944 Chr6 20223115 20223452 + ORSgTEMT00100272 356 0.3849 (878/2281) 1 Intact * Os_TE_237942 Chr6 20222986 20222758 - ORSgTETNOOT00378 231 0.2964 (877/2959) 1 Intact * Os_TE_237931 Chr6 20216062 20216061 + STOWAWAY47_OS 148 0.0087 (26/2992) 0 * Os_TE_237930 Os_TE_237930 Chr6 20216059 20216060 + STOWAWAY47_OS 148 0.0083 (25/2999) 0 * Os_TE_237931 Os_TE_237929 Chr6 20214972 20214973 + CRMA1_LTR 7543 0.0084 (25/2972) 0 * * Os_TE_237895 Chr6 20199762 20199763 - ORSgTETN00200001 10994 0.0003 (1/2929) 0 * * Os_TE_237893 Chr6 20199727 20199726 + COPIA2-LTR_OS 6433 0.0003 (1/2900) 0 * * Os_TE_237890 Chr6 20199361 20199362 - RETROSAT4_LTR 13504 0.0003 (1/2937) 0 * * Os_TE_237880 Chr6 20197716 20197517 - ORSgTEMT01400014 209 0.2921 (872/2985) 1 Intact Os_TE_237878 Os_TE_237878 Chr6 20197478 20197716 + ORSgTEMT01400031 216 0.2946 (879/2984) 1 Intact Os_TE_237880 Os_TE_237876 Chr6 20197077 20197078 + RIREX_LTR 8828 0.0003 (1/2925) 0 * Os_TE_237875 Os_TE_237875 Chr6 20197073 20197072 - RIREX_LTR 8828 0.0003 (1/2938) 0 * Os_TE_237876 Os_TE_237874 Chr6 20197006 20197005 + TELIA 141 0.0003 (1/2883) 0 * * Os_TE_237848 Chr6 20190194 20190193 + ORSgTEMT01601591 242 0.0010 (3/2858) 0 * * Os_TE_237837 Chr6 20185213 20185214 - COPIA2-LTR_OS 6433 0.0003 (1/2879) -1 * Os_TE_237836 Os_TE_237836 Chr6 20185209 20185208 + COPIA2-LTR_OS 6433 0.0003 (1/2928) 0 * Os_TE_237837 Os_TE_237819 Chr6 20177612 20177611 - TESS 244 0.0767 (229/2984) 0 * * Os_TE_237765 Chr6 20145059 20144795 + INDITTO 263 0.2105 (630/2993) 1 Intact Os_TE_237764 Os_TE_237764 Chr6 20144795 20145059 - INDITTO 263 0.2131 (638/2994) 1 Intact Os_TE_237765 Os_TE_237761 Chr6 20143154 20143155 + ORSgTETNOOT00032 218 0.0753 (223/2961) 0 * * Os_TE_237758 Chr6 20142650 20142651 - COPI2_LTR 4733 0.0003 (1/2985) 0 * Os_TE_237757 Os_TE_237757 Chr6 20142646 20142645 + COPI2_LTR 4733 0.0003 (1/2988) 0 * Os_TE_237758 Os_TE_237634 Chr6 20091395 20091394 + ORSgTEMT01701104 154 0.0895 (266/2971) 0 * Os_TE_237633 Os_TE_237633 Chr6 20091392 20091393 - ORSgTEMT01701104 154 0.0912 (272/2984) 0 * Os_TE_237634 Os_TE_237631 Chr6 20090158 20089932 - STOWAWAY8_OS 259 0.5591 (1510/2701) 1 Intact * Os_TE_237592 Chr6 20069004 20080764 + SPMLIKE 10989 0.2409 (685/2843) 1 Intact * Os_TE_237554 Chr6 20061209 20061210 - ORSgTEMT02400179 221 0.0004 (1/2444) 0 * Os_TE_237553 Os_TE_237553 Chr6 20061208 20061207 - TYPEM 227 0.0004 (1/2462) 0 * Os_TE_237554 Os_TE_237543 Chr6 20056313 20056312 + RETRO2_LTR 12874 0.0099 (29/2922) 0 * * Os_TE_237517 Chr6 20048657 20048658 - RIREX_LTR 8828 0.0007 (2/2992) 0 * Os_TE_237516 Os_TE_237516 Chr6 20048653 20048652 + RIREX_LTR 8828 0.0007 (2/2993) 0 * Os_TE_237517 Os_TE_237498 Chr6 20042879 20042880 - COPIA2-LTR_OS 6433 0.0003 (1/2976) 0 * * Os_TE_237488 Chr6 20030459 20030460 + SC-8_LTR 4951 0.0003 (1/2988) 0 * Os_TE_237487 Os_TE_237487 Chr6 20030455 20030454 - SC-8_LTR 4951 0.0003 (1/2989) 0 * Os_TE_237488 Os_TE_237480 Chr6 20028382 20028383 - SC-3_LTR 5748 0.0003 (1/2987) 0 * * Os_TE_237478 Chr6 20026091 20026092 + SZ-4_LTR 5991 0.0017 (5/2988) 0 * Os_TE_237477 Os_TE_237477 Chr6 20026087 20026086 - SZ-4_LTR 5991 0.0020 (6/2992) 0 * Os_TE_237478 Os_TE_237459 Chr6 20020011 20020012 - HARB-1_OS 5166 0.0213 (63/2955) 0 * Os_TE_237458 Os_TE_237458 Chr6 20020009 20020008 + HARB-1_OS 5166 0.0220 (65/2959) 0 * Os_TE_237459 Os_TE_237454 Chr6 20016841 20016842 - ORSgTEMT01600559 234 0.0003 (1/2871) 0 * * Os_TE_237453 Chr6 20016760 20015499 + CACTA-M 1129 0.2269 (655/2887) 1 Intact Os_TE_237452 Os_TE_237452 Chr6 20015499 20016761 - ORSgTETN00200001 10994 0.2214 (643/2904) 1 Intact Os_TE_237453 Os_TE_237441 Chr6 20011967 20011968 - COPI2_LTR 4733 0.0040 (12/2967) 0 * * Os_TE_237400 Chr6 19989876 19989875 - COPI2_LTR 4733 0.0010 (3/2983) 0 * * Os_TE_237381 Chr6 19984861 19984860 - DITAIL 271 0.6912 (2053/2970) 0 * * Os_TE_237375 Chr6 19981247 19981246 - ORSiTERT00200154 9386 0.0968 (289/2984) 0 * * Os_TE_237373 Chr6 19979994 19979993 - TRUNCATOR 2918 0.6558 (1823/2780) 0 * * Os_TE_237371 Chr6 19979715 19979714 - SINE9_OS 293 0.6831 (2011/2944) 0 * * Os_TE_237367 Chr6 19978451 19978452 - SZ-25LTR 330 0.0023 (5/2195) 0 * Os_TE_237366 Os_TE_237366 Chr6 19978447 19978446 + COPI1_LTR 4721 0.0025 (5/1965) 0 * Os_TE_237367 Os_TE_237364 Chr6 19978173 19978172 + ORSgTEMT01601445 230 0.6909 (1980/2866) 0 * Os_TE_237363 Os_TE_237363 Chr6 19978172 19978173 + TNR1 237 0.6486 (1667/2570) 0 * Os_TE_237364 Os_TE_237361 Chr6 19976808 19977338 + MERMITE18A 532 0.3596 (939/2611) 1 Intact * Os_TE_237360 Chr6 19976791 19976790 + MERMITE18A 532 0.0032 (3/932) 0 * * Os_TE_237358 Chr6 19975899 19974688 + SZ-5LTR 1223 0.3185 (946/2970) 1 Intact * Os_TE_237301 Chr6 19953366 19953367 + SPMLIKE 10989 0.0855 (252/2946) 0 * Os_TE_237300 Os_TE_237300 Chr6 19953364 19953363 - ORSgTETN00200001 10994 0.0745 (218/2927) 0 * Os_TE_237301 Os_TE_237245 Chr6 19930411 19930412 - RIRE3_LTR 12054 0.0049 (5/1025) 0 * * Os_TE_237195 Chr6 19915044 19915045 - COPIA2-LTR_OS 6433 0.0007 (2/2982) 0 * Os_TE_237194 Os_TE_237194 Chr6 19915040 19915039 + COPIA2-LTR_OS 6433 0.0007 (2/2986) 0 * Os_TE_237195 Os_TE_237192 Chr6 19914222 19914223 - AMYLTP 383 0.0003 (1/2979) 0 * Os_TE_237191 Os_TE_237191 Chr6 19914214 19914213 + AMYLTP 383 0.0003 (1/2976) 0 * Os_TE_237192 Os_TE_237172 Chr6 19904683 19904684 + SZ-62LTR 3649 0.0007 (2/2974) 0 * Os_TE_237171 Os_TE_237171 Chr6 19904679 19904678 - SZ-62LTR 3649 0.0007 (2/2971) 0 * Os_TE_237172 Os_TE_237164 Chr6 19902017 19902018 - STOWAWAY51_OS 246 0.0003 (1/2901) 0 * * Os_TE_237119 Chr6 19881276 19881275 - TRUNCATOR 2918 0.0013 (4/2987) 0 * * Os_TE_237116 Chr6 19879627 19879628 + TRUNCATOR2_LTR 2904 0.0170 (51/2992) 0 * Os_TE_237115 Os_TE_237115 Chr6 19879623 19879622 - TRUNCATOR2_LTR 2904 0.0174 (52/2994) 0 * Os_TE_237116 Os_TE_237114 Chr6 19879411 19879412 + ORSiTERTOOT00097 759 0.1211 (362/2990) 0 * Os_TE_237113 Os_TE_237113 Chr6 19879407 19879406 - SZ-22_LTR 4403 0.1212 (362/2988) 0 * Os_TE_237114 Os_TE_237112 Chr6 19878681 19877824 - MUDRN1_OS 764 0.2918 (864/2961) 1 Intact * Os_TE_237106 Chr6 19875295 19875294 - DITAILA 257 0.0017 (5/2966) 0 * * Os_TE_237086 Chr6 19872381 19872382 - HARB-1_OS 5166 0.0007 (2/2968) 0 * Os_TE_237085 Os_TE_237085 Chr6 19872379 19872378 + HARB-1_OS 5166 0.0007 (2/2966) 0 * Os_TE_237086 Os_TE_237071 Chr6 19867811 19867812 - MPING 430 0.0003 (1/2995) 0 * Os_TE_237070 Os_TE_237070 Chr6 19867809 19867808 + MPING 430 0.0003 (1/2994) 0 * Os_TE_237071 Os_TE_237069 Chr6 19865526 19865525 + DITAILA 257 0.3451 (1034/2996) 0 * Os_TE_237068 Os_TE_237068 Chr6 19865522 19865523 - DITAILA 257 0.3444 (1033/2999) 0 * Os_TE_237069 Os_TE_237066 Chr6 19864747 19864746 - STOLAB 312 0.3440 (1031/2997) 0 * * Os_TE_237050 Chr6 19854035 19854036 + MPING 430 0.0010 (1/970) 0 * * Os_TE_237046 Chr6 19851727 19851726 - ORSgTETNOOT00534 256 0.0496 (147/2965) 0 * * Os_TE_237013 Chr6 19833072 19833073 - ORSgTETNOOT00477 252 0.0142 (42/2954) 0 * Os_TE_237012 Os_TE_237012 Chr6 19833067 19833066 + ORSgTETNOOT01531 255 0.0132 (39/2962) 0 * Os_TE_237013 Os_TE_236999 Chr6 19827984 19827985 + SC-8_LTR 4951 0.0003 (1/2966) 0 * Os_TE_236998 Os_TE_236998 Chr6 19827980 19827979 - SC-8_LTR 4951 0.0003 (1/2978) 0 * Os_TE_236999 Os_TE_236958 Chr6 19810612 19810613 + COPIA2-LTR_OS 6433 0.0003 (1/2958) 0 * Os_TE_236957 Os_TE_236957 Chr6 19810608 19810607 - COPIA2-LTR_OS 6433 0.0003 (1/2964) 0 * Os_TE_236958 Os_TE_236937 Chr6 19799443 19799442 - ORSgTEMT01601493 303 0.0033 (10/2994) 0 * Os_TE_236936 Os_TE_236936 Chr6 19799434 19799435 - ORSgTEMT01601493 303 0.0013 (4/2989) 0 * Os_TE_236937 Os_TE_236931 Chr6 19798054 19798053 - SZ-30_LTR 6377 0.0033 (10/2987) 0 * * Os_TE_236929 Chr6 19796676 19796675 + ENSPM4_OS 11610 0.0426 (125/2935) 0 * * Os_TE_236928 Chr6 19796610 19796609 + TRUNCATOR 2918 0.0101 (30/2982) 0 * Os_TE_236927 Os_TE_236927 Chr6 19796609 19796610 - TRUNCATOR 2918 0.0077 (23/2984) 0 * Os_TE_236928 Os_TE_236896 Chr6 19788490 19788491 - ORSgTEMT01400022 212 0.0373 (111/2974) 0 * * Os_TE_236879 Chr6 19779020 19767023 - TRUNCATOR 2918 0.2637 (761/2886) 1 Intact Os_TE_236861 Os_TE_236861 Chr6 19767023 19779015 + TRUNCATOR 2918 0.2932 (876/2988) 1 Intact Os_TE_236879 Os_TE_236841 Chr6 19762735 19762736 - ORSgTETN00200001 10994 0.0815 (232/2846) 0 * Os_TE_236840 Os_TE_236840 Chr6 19762733 19762732 + SPMLIKE 10989 0.1082 (317/2930) 0 * Os_TE_236841 Os_TE_236826 Chr6 19759671 19759672 + MUDRN2_OS 756 0.2917 (867/2972) 0 * * Os_TE_236818 Chr6 19758961 19758962 + ORSgTETNOOT01084 214 0.0268 (79/2945) 0 * * Os_TE_236791 Chr6 19742828 19742829 + COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * * Os_TE_236786 Chr6 19741828 19741829 + ORSgTETNOOT01522 239 0.3113 (930/2987) 0 * Os_TE_236785 Os_TE_236785 Chr6 19741826 19741825 + ORSgTETNOOT00908 242 0.3000 (886/2953) 0 * Os_TE_236786 Os_TE_236776 Chr6 19737905 19737691 - COWARD 200 0.2835 (846/2984) 1 Intact Os_TE_236774 Os_TE_236774 Chr6 19737691 19737902 + COWARD-3 221 0.2854 (849/2975) 1 Intact Os_TE_236776 Os_TE_236769 Chr6 19735963 19736201 - ORSgTEMT01601432 239 0.3169 (838/2644) 1 Intact * Os_TE_236767 Chr6 19735121 19735122 - MPING 430 0.0003 (1/2994) 0 * Os_TE_236766 Os_TE_236766 Chr6 19735119 19735118 + MPING 430 0.0003 (1/2996) 0 * Os_TE_236767 Os_TE_236764 Chr6 19733636 19733374 + ORSgTEMT00100054 264 0.8364 (828/990) 1 Intact Os_TE_236762 Os_TE_236762 Chr6 19733374 19733636 + ORSgTEMT00100872 257 0.2794 (834/2985) 1 Intact Os_TE_236764 Os_TE_236755 Chr6 19729877 19723783 - SZ-67LTR 1540 0.2966 (856/2886) 1 Intact Os_TE_236737 Os_TE_236737 Chr6 19723782 19729875 + ORSiTERT00200145 12238 0.2459 (688/2798) 1 Intact Os_TE_236755 Os_TE_236732 Chr6 19723300 19712007 - RIRE2_LTR 11306 0.2583 (716/2772) 1 Intact Os_TE_236724 Os_TE_236724 Chr6 19712007 19723300 + RIRE2_LTR 11306 0.2674 (756/2827) 1 Intact Os_TE_236732 Os_TE_236723 Chr6 19711806 19711650 - UNIQUE 158 0.2976 (860/2890) 1 Intact Os_TE_236719 Os_TE_236719 Chr6 19711650 19711803 + UNIQUE 158 0.2933 (845/2881) 1 Intact Os_TE_236723 Os_TE_236718 Chr6 19711551 19711550 + ORSgTEMT01700299 212 0.7212 (2095/2905) 0 * Os_TE_236717 Os_TE_236717 Chr6 19711533 19711534 + ORSgTEMT01601122 212 0.6528 (1542/2362) 0 * Os_TE_236718 Os_TE_236714 Chr6 19711422 19711423 + SPMLIKE 10989 0.7164 (2061/2877) 0 * Os_TE_236713 Os_TE_236713 Chr6 19711420 19711419 - ORSgTETN00200001 10994 0.6838 (1810/2647) 0 * Os_TE_236714 Os_TE_236676 Chr6 19699535 19699534 + TNR2A 152 0.3287 (829/2522) 0 * * Os_TE_236662 Chr6 19695928 19695929 - COPIA2-LTR_OS 6433 0.0387 (114/2942) 0 * Os_TE_236661 Os_TE_236661 Chr6 19695924 19695923 + COPIA2-LTR_OS 6433 0.0387 (114/2943) 0 * Os_TE_236662 Os_TE_236599 Chr6 19662737 19662738 - SZ-5LTR 1223 0.0281 (84/2990) 0 * * Os_TE_236588 Chr6 19659067 19659068 - MERMITED 1572 0.0287 (84/2924) 0 * * Os_TE_236582 Chr6 19657730 19657731 + COPIA2-LTR_OS 6433 0.0049 (14/2830) 0 * Os_TE_236581 Os_TE_236581 Chr6 19657726 19657725 - COPIA2-LTR_OS 6433 0.0049 (14/2850) 0 * Os_TE_236582 Os_TE_236580 Chr6 19657695 19657694 - ENSPM4_OS 11610 0.0135 (38/2824) 0 * * Os_TE_236547 Chr6 19633507 19633506 + RIRE3A_LTR 10580 0.0005 (1/1824) -1 * * Os_TE_236501 Chr6 19614057 19614056 + ORSgTEMT01601591 242 0.0003 (1/2965) 0 * * Os_TE_236482 Chr6 19611100 19611101 - COPI2_LTR 4733 0.0013 (4/2991) 0 * Os_TE_236481 Os_TE_236481 Chr6 19611096 19611095 + COPI2_LTR 4733 0.0013 (4/2992) 0 * Os_TE_236482 Os_TE_236373 Chr6 19554841 19554842 + ORSiTERTOOT00097 759 0.0003 (1/2997) 0 * Os_TE_236372 Os_TE_236372 Chr6 19554837 19554836 - SZ-22_LTR 4403 0.0003 (1/2996) 0 * Os_TE_236373 Os_TE_236360 Chr6 19545251 19545252 + ORSiTERTOOT00296 5553 0.0010 (3/2975) 0 * Os_TE_236359 Os_TE_236359 Chr6 19545247 19545246 - SC-3_LTR 5748 0.0010 (3/2979) 0 * Os_TE_236360 Os_TE_236349 Chr6 19541477 19534237 - RIREX_LTR 8828 0.2503 (737/2945) 1 Intact Os_TE_236345 Os_TE_236345 Chr6 19534237 19541477 + RIREX_LTR 8828 0.2572 (762/2963) 1 Intact Os_TE_236349 Os_TE_236344 Chr6 19534014 19534015 - SC-8_LTR 4951 0.0007 (2/2992) 0 * Os_TE_236343 Os_TE_236343 Chr6 19534010 19534009 + SC-8_LTR 4951 0.0007 (2/2989) 0 * Os_TE_236344 Os_TE_236326 Chr6 19518858 19518859 + SC-8_LTR 4951 0.0003 (1/2984) 0 * Os_TE_236325 Os_TE_236325 Chr6 19518854 19518853 - SC-8_LTR 4951 0.0003 (1/2986) 0 * Os_TE_236326 Os_TE_236291 Chr6 19507300 19507301 + COPI2_LTR 4733 0.0010 (3/2975) 0 * * Os_TE_236288 Chr6 19501556 19501557 + ORSiTERTOOT00226 792 0.0003 (1/2985) 0 * * Os_TE_236286 Chr6 19501188 19501189 + COPIA2-LTR_OS 6433 0.0003 (1/2984) 0 * Os_TE_236285 Os_TE_236285 Chr6 19501184 19501183 - COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * Os_TE_236286 Os_TE_236269 Chr6 19495905 19495904 - COPI1_LTR 4721 0.0017 (5/2991) 0 * * Os_TE_236266 Chr6 19495743 19495742 - ORSgTETN00200001 10994 0.0010 (3/2994) 0 * * Os_TE_236265 Chr6 19495231 19494995 + STOWAWAY21_OS 243 0.2424 (722/2978) 1 Intact * Os_TE_236259 Chr6 19489520 19489521 + RETROSAT4_LTR 13504 0.5537 (1619/2924) 0 * Os_TE_236258 Os_TE_236258 Chr6 19489516 19489515 - RETROSAT4_LTR 13504 0.5693 (1705/2995) 0 * Os_TE_236259 Os_TE_236234 Chr6 19478666 19478665 - TRUNCATOR2_LTR 2904 0.0041 (1/245) -1 * * Os_TE_236197 Chr6 19462063 19462062 + COPI1_LTR 4721 0.0004 (1/2620) 0 * * Os_TE_236190 Chr6 19459381 19459382 + ORSiTERTOOT00226 792 0.0011 (3/2644) 0 * Os_TE_236189 Os_TE_236189 Chr6 19459377 19459376 - SZ-22_LTR 4403 0.0011 (3/2649) 0 * Os_TE_236190 Os_TE_236185 Chr6 19454178 19454179 + RIRE2_LTR 11306 0.0354 (93/2630) 0 * * Os_TE_236159 Chr6 19444654 19444890 - ORSgTEMT01602521 238 0.8768 (2597/2962) 1 Intact * Os_TE_236158 Chr6 19444364 19444365 - CACTA-P 1150 0.0289 (86/2972) 0 * * Os_TE_236156 Chr6 19443903 19443902 - RETROSAT2LTR 12796 0.1000 (299/2990) 0 * * Os_TE_236152 Chr6 19442927 19442926 + SINE1OS 127 0.1018 (296/2908) 0 * * Os_TE_236147 Chr6 19441500 19441499 + MERMITED 1572 0.0003 (1/2890) 0 * * Os_TE_236142 Chr6 19436256 19436255 + ORSgTETN00200005 1121 0.4628 (1305/2820) 0 * Os_TE_236141 Os_TE_236141 Chr6 19436254 19436255 + CACTA-H 1152 0.4808 (1391/2893) 0 * Os_TE_236142 Os_TE_236139 Chr6 19434583 19434582 + ORSgTEMT00500201 140 0.1054 (308/2921) 0 * Os_TE_236138 Os_TE_236138 Chr6 19434579 19434580 - ORSgTEMT00501356 145 0.0859 (247/2874) 0 * Os_TE_236139 Os_TE_236123 Chr6 19429620 19429619 + STOWAWAY1_OS 149 0.2057 (594/2888) 0 * Os_TE_236122 Os_TE_236122 Chr6 19429619 19429620 + ORSgTEMT01702111 154 0.2149 (594/2764) 0 * Os_TE_236123 Os_TE_236117 Chr6 19428868 19428867 - ORSiTERT00100079 4922 0.0280 (79/2820) 0 * * Os_TE_236069 Chr6 19408473 19408474 + ORSgTERTOOT00009 12852 0.0004 (1/2742) 0 * Os_TE_236068 Os_TE_236068 Chr6 19408469 19408468 - RETRO2_LTR 12874 0.0004 (1/2753) 0 * Os_TE_236069 Os_TE_236049 Chr6 19394575 19394574 + RIREX_LTR 8828 0.0010 (3/2993) 0 * * Os_TE_235966 Chr6 19356518 19352940 + TWIFBIG 3567 0.2307 (677/2934) 1 Intact Os_TE_235964 Os_TE_235964 Chr6 19352937 19356518 - ORSiTETNOOT00216 3569 0.2234 (655/2932) 1 Intact Os_TE_235966 Os_TE_235940 Chr6 19340359 19340358 + ORSiTERTOOT00296 5553 0.0013 (4/2987) 0 * * Os_TE_235932 Chr6 19336953 19336954 - MPING 430 0.0003 (1/2986) 0 * Os_TE_235931 Os_TE_235931 Chr6 19336951 19336950 + MPING 430 0.0003 (1/2988) 0 * Os_TE_235932 Os_TE_235902 Chr6 19323604 19323603 + TRUNCATOR 2918 0.4699 (1405/2990) 0 * Os_TE_235901 Os_TE_235901 Chr6 19323595 19323596 - TRUNCATOR 2918 0.4645 (1382/2975) 0 * Os_TE_235902 Os_TE_235865 Chr6 19308846 19308845 + ORSgTEMT01601743 239 0.6923 (1883/2720) 0 * Os_TE_235864 Os_TE_235864 Chr6 19308834 19308835 - ORSgTEMT01602413 239 0.7165 (2136/2981) 0 * Os_TE_235865 Os_TE_235863 Chr6 19308523 19308524 + RIREX_LTR 8828 0.0003 (1/2988) 0 * Os_TE_235862 Os_TE_235862 Chr6 19308519 19308518 - RIREX_LTR 8828 0.0003 (1/2986) 0 * Os_TE_235863 Os_TE_235859 Chr6 19306391 19306392 + TWIF 586 0.0003 (1/2977) 0 * * Os_TE_235857 Chr6 19305812 19291577 - ORSgTETN00200001 10994 0.1820 (501/2752) 1 Intact Os_TE_235847 Os_TE_235847 Chr6 19291577 19305812 + SPMLIKE 10989 0.2493 (724/2904) 1 Intact Os_TE_235857 Os_TE_235834 Chr6 19283757 19283756 - RIRE3_LTR 12054 0.0555 (166/2989) 0 * * Os_TE_235781 Chr6 19264325 19264326 - ORSiTETNOOT00107 906 0.0559 (167/2990) 0 * * Os_TE_235780 Chr6 19264262 19264263 + COPIA2-LTR_OS 6433 0.0007 (2/2998) 0 * Os_TE_235779 Os_TE_235779 Chr6 19264258 19264257 - COPIA2-LTR_OS 6433 0.0007 (2/2998) 0 * Os_TE_235780 Os_TE_235777 Chr6 19263894 19263895 - RIRE3A_LTR 10580 0.0297 (89/2998) 0 * Os_TE_235776 Os_TE_235776 Chr6 19263890 19263889 + ORSiTERTOOT00027 10853 0.0280 (84/2997) 0 * Os_TE_235777 Os_TE_235761 Chr6 19259772 19259773 - COPIA2-LTR_OS 6433 0.0004 (1/2843) 0 * * Os_TE_235717 Chr6 19235055 19235056 - RMU1A23 4144 0.0299 (81/2706) 0 * * Os_TE_235643 Chr6 19200451 19200452 - COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_235642 Os_TE_235642 Chr6 19200447 19200446 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_235643 Os_TE_235636 Chr6 19197203 19197202 - STOWAWAY14_OS 258 0.4955 (1478/2983) 0 * * Os_TE_235631 Chr6 19195605 19195606 - ENSPM4_OS 11610 0.0535 (160/2992) 0 * * Os_TE_235630 Chr6 19194730 19194731 + TYPEU4 402 0.0095 (27/2851) 0 * Os_TE_235629 Os_TE_235629 Chr6 19194722 19194721 - TYPEU1 380 0.0090 (27/2999) 0 * Os_TE_235630 Os_TE_235615 Chr6 19186156 19186155 + ENSPM3_OS 10837 0.0890 (163/1832) 0 * * Os_TE_235611 Chr6 19185751 19185750 + RPO_OS 1983 0.0016 (4/2579) 0 * Os_TE_235610 Os_TE_235610 Chr6 19185726 19185727 - RPO_OS 1983 0.0016 (4/2554) 0 * Os_TE_235611 Os_TE_235583 Chr6 19174425 19174424 - ORSiTERTOOT00274 4749 0.0018 (5/2828) 0 * * Os_TE_235564 Chr6 19166692 19166693 + ORSiTERTOOT00074 4935 0.0003 (1/2951) 0 * * Os_TE_235532 Chr6 19155831 19155830 - RIRE3_LTR 12054 0.0140 (40/2847) 0 * * Os_TE_235531 Chr6 19154038 19154039 - RIRE3A_LTR 10580 0.0088 (25/2826) 0 * Os_TE_235530 Os_TE_235530 Chr6 19154034 19154033 + ORSiTERTOOT00027 10853 0.0092 (26/2828) 0 * Os_TE_235531 Os_TE_235443 Chr6 19116637 19116638 - OSTE17 734 0.0018 (5/2781) 0 * Os_TE_235442 Os_TE_235442 Chr6 19116628 19116627 - OSTE17 734 0.0018 (5/2787) 0 * Os_TE_235443 Os_TE_235441 Chr6 19115885 19115886 + OSTONOR1_LTR 6440 0.0018 (5/2806) 0 * Os_TE_235440 Os_TE_235440 Chr6 19115881 19115880 - ORSiTERT00100062 5674 0.0018 (5/2809) 0 * Os_TE_235441 Os_TE_235433 Chr6 19113824 19113825 - TRUNCATOR 2918 0.0131 (37/2823) 0 * * Os_TE_235400 Chr6 19101305 19101304 - DITAILA 257 0.0014 (4/2822) 0 * * Os_TE_235392 Chr6 19099710 19099709 + SZ-38 8643 0.0014 (4/2847) 0 * * Os_TE_235384 Chr6 19094009 19070092 - RETRO2_LTR 12874 0.2532 (703/2777) 1 Intact Os_TE_235365 Os_TE_235365 Chr6 19070092 19094009 + RETRO2_LTR 12874 0.3012 (729/2420) 1 Intact Os_TE_235384 Os_TE_235360 Chr6 19069654 19069655 + TRUNCATOR2_LTR 2904 0.0056 (5/899) 0 * * Os_TE_235336 Chr6 19039969 19039968 + CACTA-H 1152 0.0014 (4/2784) 0 * * Os_TE_235328 Chr6 19034080 19034081 - ORSgTETN00200001 10994 0.0043 (12/2811) 0 * Os_TE_235327 Os_TE_235327 Chr6 19034078 19034077 + SPMLIKE 10989 0.0092 (26/2827) 0 * Os_TE_235328 Os_TE_235313 Chr6 19027014 19027013 - RIRE3_LTR 12054 0.0086 (24/2787) 0 * * Os_TE_235307 Chr6 19022603 19022604 - ORSgTEMT00901230 241 0.0018 (5/2841) 0 * * Os_TE_235306 Chr6 19022289 19022288 - RIREX_LTR 8828 0.0063 (18/2837) 0 * * Os_TE_235305 Chr6 19021671 19021670 + ORSgTEMT01700505 154 0.0018 (5/2826) 0 * * Os_TE_235285 Chr6 19011561 19011560 - RIRE3_LTR 12054 0.0029 (8/2778) 0 * * Os_TE_235263 Chr6 19004243 19004242 - RIREX_LTR 8828 0.0018 (5/2842) 0 * * Os_TE_235262 Chr6 19004042 19004043 - RIRE3_LTR 12054 0.0144 (41/2841) 0 * Os_TE_235261 Os_TE_235261 Chr6 19004038 19004037 + RIRE3_LTR 12054 0.0137 (39/2844) 0 * Os_TE_235262 Os_TE_235235 Chr6 18988896 18988897 - CRM-LTR_OS 7749 0.0749 (211/2816) 0 * Os_TE_235234 Os_TE_235234 Chr6 18988892 18988891 + SZ-22_LTR 4403 0.0750 (211/2814) 0 * Os_TE_235235 Os_TE_235226 Chr6 18987364 18987365 + SPMLIKE 10989 0.0014 (4/2825) 0 * Os_TE_235225 Os_TE_235225 Chr6 18987362 18987361 - SPMLIKE 10989 0.0011 (3/2824) 0 * Os_TE_235226 Os_TE_235215 Chr6 18979434 18979435 - TRUNCATOR2_LTR 2904 0.0018 (5/2829) 0 * Os_TE_235214 Os_TE_235214 Chr6 18979430 18979429 + TRUNCATOR2_LTR 2904 0.0007 (2/2830) 0 * Os_TE_235215 Os_TE_235200 Chr6 18972154 18972155 - ORSgTERT00201216 11284 0.0015 (4/2709) 0 * Os_TE_235199 Os_TE_235199 Chr6 18972150 18972149 - RIRE2_LTR 11306 0.0015 (4/2701) 0 * Os_TE_235200 Os_TE_235193 Chr6 18969692 18969691 + GYPSY-B_LTR 7068 0.0018 (5/2769) 0 * * Os_TE_235188 Chr6 18967406 18967407 - ENSPM3_OS 10837 0.0562 (163/2902) 0 * Os_TE_235187 Os_TE_235187 Chr6 18967404 18967403 + ENSPM3_OS 10837 0.0011 (3/2756) 0 * Os_TE_235188 Os_TE_235186 Chr6 18967022 18967023 - ORSgTEMT02400179 221 0.0733 (212/2893) 0 * Os_TE_235185 Os_TE_235185 Chr6 18967021 18967020 - TYPEM 227 0.0737 (214/2905) 0 * Os_TE_235186 Os_TE_235145 Chr6 18945066 18935228 - RIRE3A_LTR 10580 0.2494 (705/2827) 1 Intact * Os_TE_235123 Chr6 18923716 18920507 - RIRE3A_LTR 10580 0.2342 (698/2980) 1 Solo_LTR Os_TE_235115 Os_TE_235115 Chr6 18920514 18923716 + ORSiTERTOOT00027 10853 0.2487 (704/2831) 1 Intact Os_TE_235123 Os_TE_235111 Chr6 18914430 18914431 - SZ-22_LTR 4403 0.0028 (8/2848) 0 * Os_TE_235110 Os_TE_235110 Chr6 18914426 18914425 + ORSiTERTOOT00226 792 0.0028 (8/2843) 0 * Os_TE_235111 Os_TE_235105 Chr6 18908702 18908703 - RIRE2_LTR 11306 0.0568 (169/2975) 0 * * Os_TE_235100 Chr6 18907445 18907444 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * * Os_TE_235097 Chr6 18907052 18907051 - EnSpm-13_OS 11171 0.0003 (1/2990) 0 * * Os_TE_235086 Chr6 18902474 18902473 + TRUNCATOR 2918 0.0016 (4/2482) 0 * * Os_TE_235074 Chr6 18899214 18896222 - TRUNCATOR 2918 0.2310 (685/2966) 1 Intact * Os_TE_234945 Chr6 18823094 18822835 + ORSgTETNOOT00908 242 0.2439 (668/2739) 1 Intact * Os_TE_234369 Chr6 18279633 18279634 - TRUNCATOR2_LTR 2904 0.1553 (160/1030) 0 * * Os_TE_234274 Chr6 18230171 18230170 - MuDR4_OS 7610 0.0429 (44/1025) 0 * * Os_TE_234235 Chr6 18215806 18215807 + SPMLIKE 10989 0.0003 (1/2994) 0 * Os_TE_234234 Os_TE_234234 Chr6 18215804 18215803 - ORSgTETN00200001 10994 0.0003 (1/2981) 0 * Os_TE_234235 Os_TE_234210 Chr6 18210458 18210459 + RIRE3_LTR 12054 0.0123 (36/2934) 0 * * Os_TE_234208 Chr6 18210292 18210293 - RIRE3A_LTR 10580 0.0529 (158/2985) 0 * Os_TE_234207 Os_TE_234207 Chr6 18210288 18210287 + ORSiTERTOOT00027 10853 0.0542 (162/2988) 0 * Os_TE_234208 Os_TE_234188 Chr6 18206615 18206616 - TRUNCATOR2_LTR 2904 0.0014 (4/2953) 0 * Os_TE_234187 Os_TE_234187 Chr6 18206611 18206610 + ORSiCMCM00100019 2717 0.0014 (4/2932) 0 * Os_TE_234188 Os_TE_234150 Chr6 18197986 18197987 - TRUNCATOR 2918 0.0013 (4/2976) 0 * * Os_TE_234121 Chr6 18190427 18190426 - RIRE2_LTR 11306 0.0003 (1/2997) 0 * * Os_TE_234117 Chr6 18189284 18189283 - RIREX_LTR 8828 0.0020 (6/2951) 0 * * Os_TE_234116 Chr6 18188040 18188041 - TRUNCATOR2_LTR 2904 0.0564 (169/2998) 0 * * Os_TE_234056 Chr6 18165589 18165588 - ORSgTEMT02400246 177 0.0107 (28/2625) 0 * * Os_TE_234041 Chr6 18151929 18151930 - SC-3_LTR 5748 0.0007 (2/2978) 0 * Os_TE_234040 Os_TE_234040 Chr6 18151925 18151924 + ORSiTERTOOT00296 5553 0.0003 (1/2971) 0 * Os_TE_234041 Os_TE_234000 Chr6 18136851 18136422 - MPING 430 0.0131 (13/989) 1 Intact Os_TE_233999 Os_TE_233999 Chr6 18136422 18136851 + MPING 430 0.0044 (13/2984) 1 Intact Os_TE_234000 Os_TE_233960 Chr6 18122974 18122975 - ORSiTERT00200154 9386 0.0214 (63/2950) 0 * Os_TE_233959 Os_TE_233959 Chr6 18122968 18122967 + TRUNCATOR 2918 0.0230 (68/2953) 0 * Os_TE_233960 Os_TE_233940 Chr6 18115468 18115467 - TRUNCATOR2_LTR 2904 0.0749 (153/2042) 0 * * Os_TE_233936 Chr6 18114661 18114662 + RIREX_LTR 8828 0.0007 (2/2975) 0 * Os_TE_233935 Os_TE_233935 Chr6 18114657 18114656 - RIREX_LTR 8828 0.0007 (2/2967) 0 * Os_TE_233936 Os_TE_233866 Chr6 18090073 18090074 - TRUNCATOR2_LTR 2904 0.0137 (41/2994) 0 * Os_TE_233865 Os_TE_233865 Chr6 18090069 18090068 + ORSiCMCM00100019 2717 0.0124 (37/2993) 0 * Os_TE_233866 Os_TE_233841 Chr6 18078966 18077438 - RETRO2_LTR 12874 0.2918 (871/2985) 1 Intact * Os_TE_233829 Chr6 18076210 18076211 - ORSiTERTOOT00086 525 0.0003 (1/2946) 0 * * Os_TE_233818 Chr6 18075195 18075194 + ORSiTERTOOT00028 8600 0.0094 (28/2987) 0 * * Os_TE_233684 Chr6 18001670 18001671 - SC-8_LTR 4951 0.0033 (10/2995) 0 * Os_TE_233683 Os_TE_233683 Chr6 18001666 18001665 + SC-8_LTR 4951 0.0037 (11/2991) 0 * Os_TE_233684 Os_TE_233682 Chr6 18001554 18001555 + ORSiTERTOOT00296 5553 0.0003 (1/2988) 0 * * Os_TE_233679 Chr6 18001066 18001065 - SC-3_LTR 5748 0.6073 (1817/2992) 0 * * Os_TE_233659 Chr6 17990455 17990456 + EnSpm-11_OS 13126 0.0204 (61/2991) 0 * Os_TE_233658 Os_TE_233658 Chr6 17990453 17990452 - EnSpm-11_OS 13126 0.0212 (62/2920) 0 * Os_TE_233659 Os_TE_233653 Chr6 17987141 17987140 - COPIA2-LTR_OS 6433 0.0030 (9/2985) 0 * * Os_TE_233643 Chr6 17981607 17981608 + NDNA1TNA_OS 334 0.5564 (1583/2845) 0 * * Os_TE_233625 Chr6 17979017 17979016 + XIKE 594 0.0394 (118/2992) 0 * * Os_TE_233624 Chr6 17978543 17978544 - RIREX_LTR 8828 0.0003 (1/2996) 0 * Os_TE_233623 Os_TE_233623 Chr6 17978539 17978538 + RIREX_LTR 8828 0.0003 (1/2993) 0 * Os_TE_233624 Os_TE_233619 Chr6 17975343 17975344 + ORSgTETNOOT01930 140 0.0003 (1/2985) 0 * * Os_TE_233610 Chr6 17973800 17973801 - MDR2 6967 0.5255 (1565/2978) 0 * Os_TE_233609 Os_TE_233609 Chr6 17973792 17973791 + MDR2 6967 0.5261 (1563/2971) 0 * Os_TE_233610 Os_TE_233577 Chr6 17966277 17966278 + ORSiTERTOOT00296 5553 0.0003 (1/2997) 0 * Os_TE_233576 Os_TE_233576 Chr6 17966273 17966272 - SC-3_LTR 5748 0.0003 (1/2998) 0 * Os_TE_233577 Os_TE_233574 Chr6 17966214 17966213 - SC-3_LTR 5748 0.0003 (1/2996) 0 * * Os_TE_233555 Chr6 17958919 17958920 - SC-3_LTR 5748 0.0007 (2/2986) 0 * Os_TE_233554 Os_TE_233554 Chr6 17958915 17958914 + ORSiTERTOOT00296 5553 0.0007 (2/2988) 0 * Os_TE_233555 Os_TE_233552 Chr6 17955801 17955802 - SC-3_LTR 5748 0.0003 (1/2971) 0 * * Os_TE_233541 Chr6 17947282 17947283 + ORSiTERTOOT00296 5553 0.0023 (7/2998) 0 * Os_TE_233540 Os_TE_233540 Chr6 17947278 17947277 - SC-3_LTR 5748 0.0023 (7/2993) 0 * Os_TE_233541 Os_TE_233536 Chr6 17943632 17943633 - SC-8_LTR 4951 0.0057 (17/2976) 0 * Os_TE_233535 Os_TE_233535 Chr6 17943628 17943627 + SC-8_LTR 4951 0.0054 (16/2969) 0 * Os_TE_233536 Os_TE_233495 Chr6 17927161 17927162 - SZ-22_LTR 4403 0.0004 (1/2283) 0 * Os_TE_233494 Os_TE_233494 Chr6 17927157 17927156 + ORSiTERTOOT00226 792 0.0004 (1/2257) 0 * Os_TE_233495 Os_TE_233472 Chr6 17922887 17922886 + INDITTO 263 0.0947 (278/2935) 0 * * Os_TE_233466 Chr6 17921094 17921095 - NDNA1TNA_OS 334 0.0295 (86/2917) 0 * Os_TE_233465 Os_TE_233465 Chr6 17921093 17921092 + NDNA1TNA_OS 334 0.0262 (76/2896) 0 * Os_TE_233466 Os_TE_233356 Chr6 17879648 17879647 - GYPSY-A_LTR 8951 0.1100 (306/2782) 0 * * Os_TE_233340 Chr6 17867981 17867982 - MERMITE-18 1263 0.8195 (2415/2947) 0 * * Os_TE_233302 Chr6 17850241 17850242 + AMYLTP 383 0.0274 (81/2956) 0 * Os_TE_233301 Os_TE_233301 Chr6 17850233 17850232 - AMYLTP 383 0.0254 (75/2956) 0 * Os_TE_233302 Os_TE_233299 Chr6 17850175 17850174 - ORSgTETN00200001 10994 0.0069 (20/2919) 0 * * Os_TE_233287 Chr6 17844877 17844876 + TRUNCATOR 2918 0.0081 (24/2972) 0 * Os_TE_233286 Os_TE_233286 Chr6 17844876 17844877 - TRUNCATOR 2918 0.0081 (24/2974) 0 * Os_TE_233287 Os_TE_233272 Chr6 17838610 17838611 + OSTE33 1012 0.1120 (334/2982) 0 * Os_TE_233271 Os_TE_233271 Chr6 17838602 17838601 + OSTE33 1012 0.1122 (335/2986) 0 * Os_TE_233272 Os_TE_233256 Chr6 17831117 17831118 - MPING 430 0.0007 (2/2982) 0 * Os_TE_233255 Os_TE_233255 Chr6 17831115 17831114 + MPING 430 0.0007 (2/2987) 0 * Os_TE_233256 Os_TE_233247 Chr6 17826361 17826362 + COPI2_LTR 4733 0.0003 (1/2947) 0 * Os_TE_233246 Os_TE_233246 Chr6 17826357 17826356 - COPI2_LTR 4733 0.0003 (1/2930) 0 * Os_TE_233247 Os_TE_233242 Chr6 17824876 17824875 + ORSgTEMT01601591 242 0.0793 (235/2962) 0 * Os_TE_233241 Os_TE_233241 Chr6 17824870 17824871 + STOWAWAY51_OS 246 0.0835 (249/2982) 0 * Os_TE_233242 Os_TE_233226 Chr6 17817663 17817664 + TRUNCATOR 2918 0.0668 (200/2996) 0 * * Os_TE_233211 Chr6 17799920 17799921 - GYPSY-A_LTR 8951 0.0265 (79/2982) 0 * Os_TE_233210 Os_TE_233210 Chr6 17799916 17799915 + GYPSY-A_LTR 8951 0.0269 (80/2976) 0 * Os_TE_233211 Os_TE_233209 Chr6 17798601 17798602 + ORSiTERTOOT00381 4988 0.0007 (2/2981) 0 * Os_TE_233208 Os_TE_233208 Chr6 17798597 17798596 - SC-8_LTR 4951 0.0007 (2/2981) 0 * Os_TE_233209 Os_TE_233176 Chr6 17788474 17788475 + OSTONOR1_LTR 6440 0.0925 (276/2985) 0 * Os_TE_233175 Os_TE_233175 Chr6 17788470 17788469 - OSTONOR1_LTR 6440 0.0950 (284/2988) 0 * Os_TE_233176 Os_TE_233173 Chr6 17788272 17787937 - ORSgTEMT00101341 314 0.5466 (1631/2984) 1 Intact * Os_TE_233168 Chr6 17787429 17787430 + SPMLIKE 10989 0.0017 (5/2971) 0 * * Os_TE_233155 Chr6 17784494 17784495 + ORSiCMCM00100019 2717 0.0105 (31/2966) 0 * * Os_TE_233154 Chr6 17782500 17782501 + MPING 430 0.0004 (1/2715) 0 * Os_TE_233153 Os_TE_233153 Chr6 17782498 17782497 - MPING 430 0.0004 (1/2711) 0 * Os_TE_233154 Os_TE_233151 Chr6 17782155 17782156 + ORSgTEMT01601591 242 0.0003 (1/2986) 0 * * Os_TE_233130 Chr6 17775780 17775781 + RIREX_LTR 8828 0.0044 (13/2973) 0 * Os_TE_233129 Os_TE_233129 Chr6 17775776 17775775 - RIREX_LTR 8828 0.0044 (13/2964) 0 * Os_TE_233130 Os_TE_233079 Chr6 17756823 17756824 + TRUNCATOR 2918 0.0121 (36/2984) 0 * * Os_TE_233076 Chr6 17755325 17755324 - TRUNCATOR 2918 0.0037 (11/2981) 0 * Os_TE_233075 Os_TE_233075 Chr6 17755324 17755325 + TRUNCATOR 2918 0.0037 (11/2978) 0 * Os_TE_233076 Os_TE_233045 Chr6 17743688 17743687 - ORSgTEMT01602413 239 0.0013 (4/2971) 0 * * Os_TE_232990 Chr6 17719560 17719561 + COPI2_LTR 4733 0.0017 (5/2997) 0 * Os_TE_232989 Os_TE_232989 Chr6 17719556 17719555 - COPI2_LTR 4733 0.0017 (5/2996) 0 * Os_TE_232990 Os_TE_232988 Chr6 17718855 17718856 - SZ-22_LTR 4403 0.0003 (1/2994) 0 * * Os_TE_232986 Chr6 17718288 17718289 - COPI2_LTR 4733 0.0003 (1/2989) 0 * Os_TE_232985 Os_TE_232985 Chr6 17718284 17718283 + COPI2_LTR 4733 0.0003 (1/2990) 0 * Os_TE_232986 Os_TE_232979 Chr6 17716357 17716358 + MuDR-5_OS 17471 0.1055 (314/2975) 0 * * Os_TE_232938 Chr6 17699225 17699226 - COPIA2-LTR_OS 6433 0.0304 (91/2997) 0 * Os_TE_232937 Os_TE_232937 Chr6 17699221 17699220 + COPIA2-LTR_OS 6433 0.0271 (81/2987) 0 * Os_TE_232938 Os_TE_232933 Chr6 17696882 17696883 - RIREX_LTR 8828 0.1052 (314/2984) 0 * * Os_TE_232926 Chr6 17695006 17695005 - ENSPM4_OS 11610 0.0315 (94/2986) 0 * * Os_TE_232914 Chr6 17691583 17691584 + RIREX_LTR 8828 0.0007 (2/2930) 0 * Os_TE_232913 Os_TE_232913 Chr6 17691579 17691578 - RIREX_LTR 8828 0.0007 (2/2918) 0 * Os_TE_232914 Os_TE_232881 Chr6 17678810 17678809 + TRUNCATOR 2918 0.0172 (47/2740) 0 * * Os_TE_232868 Chr6 17674015 17674016 - RIRE3_LTR 12054 0.1052 (310/2948) 0 * Os_TE_232867 Os_TE_232867 Chr6 17674011 17674010 + RIRE3_LTR 12054 0.1062 (313/2947) 0 * Os_TE_232868 Os_TE_232836 Chr6 17663516 17663517 + TRUNCATOR2_LTR 2904 0.0003 (1/2993) 0 * Os_TE_232835 Os_TE_232835 Chr6 17663512 17663511 - TRUNCATOR2_LTR 2904 0.0003 (1/2992) 0 * Os_TE_232836 Os_TE_232812 Chr6 17651869 17651870 - STOWAWAY51_OS 246 0.0004 (1/2777) 0 * * Os_TE_232810 Chr6 17651453 17651452 - COPIA2-LTR_OS 6433 0.0003 (1/2893) 0 * * Os_TE_232805 Chr6 17648301 17648302 - DITTO 244 0.6253 (1869/2989) 0 * * Os_TE_232804 Chr6 17648147 17648148 - COPIA2-LTR_OS 6433 0.0003 (1/2977) 0 * Os_TE_232803 Os_TE_232803 Chr6 17648143 17648142 + COPIA2-LTR_OS 6433 0.0003 (1/2981) 0 * Os_TE_232804 Os_TE_232755 Chr6 17632807 17633042 + STOWAWAY45_OS 266 0.4461 (1085/2432) 1 Intact * Os_TE_232754 Chr6 17632730 17632494 + ORSgTEMT01601934 207 0.5928 (1076/1815) 1 Intact * Os_TE_232752 Chr6 17632101 17632102 - COPIA2-LTR_OS 6433 0.0003 (1/2976) 0 * * Os_TE_232751 Chr6 17631403 17631404 + RIREX_LTR 8828 0.0003 (1/2935) 0 * * Os_TE_232748 Chr6 17630387 17630386 + STOWAWAY11_OS 292 0.4341 (892/2055) 0 * * Os_TE_232735 Chr6 17626569 17625057 + ORSiCMCM00100013 9728 0.3961 (1173/2961) 1 Intact Os_TE_232732 Os_TE_232732 Chr6 17625057 17626569 - ORSiCMCM00100013 9728 0.3985 (1182/2966) 1 Intact Os_TE_232735 Os_TE_232729 Chr6 17623960 17623961 + OSTONOR1_LTR 6440 0.0188 (56/2971) 0 * Os_TE_232728 Os_TE_232728 Chr6 17623956 17623955 - OSTONOR1_LTR 6440 0.0205 (61/2976) 0 * Os_TE_232729 Os_TE_232727 Chr6 17623835 17623836 - ORSgTETN00200001 10994 0.0037 (11/2955) 0 * Os_TE_232726 Os_TE_232726 Chr6 17623833 17623832 + SPMLIKE 10989 0.0057 (17/2987) 0 * Os_TE_232727 Os_TE_232725 Chr6 17623816 17623817 - RIREX_LTR 8828 0.0035 (9/2586) 0 * * Os_TE_232721 Chr6 17622991 17623229 - TREP215 239 0.3957 (1178/2977) 1 Intact * Os_TE_232674 Chr6 17605000 17604999 + ORSiTERTOOT00381 4988 0.0171 (22/1285) 0 * * Os_TE_232638 Chr6 17592883 17590728 - MUDRN3_OS 903 0.2712 (787/2902) 1 Intact Os_TE_232637 Os_TE_232637 Chr6 17590728 17592883 - MUDRN3_OS 903 0.2684 (777/2895) 1 Intact Os_TE_232638 Os_TE_232592 Chr6 17573118 17573117 + ORSgTEMT00501299 151 0.7208 (2156/2991) 0 * * Os_TE_232591 Chr6 17572479 17572326 - UNIQUE 158 0.2916 (872/2990) 1 Intact Os_TE_232589 Os_TE_232589 Chr6 17572326 17572476 - UNIQUE 158 0.3012 (881/2925) 1 Intact Os_TE_232591 Os_TE_232583 Chr6 17568976 17568975 + ORSgTEMT01602181 239 0.0235 (70/2980) 0 * Os_TE_232582 Os_TE_232582 Chr6 17568973 17568974 - ORSgTEMT01601432 239 0.0226 (67/2966) 0 * Os_TE_232583 Os_TE_232574 Chr6 17566329 17566328 - F524 291 0.0003 (1/2942) 0 * * Os_TE_232571 Chr6 17564668 17564667 + STOWAWAY44_OS 240 0.0238 (71/2983) 0 * Os_TE_232570 Os_TE_232570 Chr6 17564665 17564666 - STOWAWAY44_OS 240 0.0238 (71/2978) 0 * Os_TE_232571 Os_TE_232561 Chr6 17557650 17557651 - SC-3_LTR 5748 0.0177 (53/2988) 0 * * Os_TE_232555 Chr6 17553910 17553911 + SZ-9LTR 965 0.0003 (1/2965) 0 * Os_TE_232554 Os_TE_232554 Chr6 17553906 17553905 - SZ-9LTR 965 0.0003 (1/2964) 0 * Os_TE_232555 Os_TE_232553 Chr6 17552053 17552054 + ORSiTEMT02800001 225 0.0200 (60/2996) 0 * * Os_TE_232536 Chr6 17545437 17545438 + TRSA_OS 353 0.0003 (1/2962) 0 * * Os_TE_232506 Chr6 17533565 17534846 - RETRO2_LTR 12874 0.3007 (806/2680) 1 Solo_LTR * Os_TE_232438 Chr6 17510360 17510359 - SC-3_LTR 5748 0.0380 (113/2976) 0 * * Os_TE_232387 Chr6 17487640 17487868 - F569 228 0.6130 (1804/2943) 1 Intact * Os_TE_232373 Chr6 17485342 17485222 - ORSgTEMT00500284 105 0.6873 (1844/2683) 1 Intact * Os_TE_232366 Chr6 17477203 17472724 + RETROSAT2LTRA 3112 0.6348 (1846/2908) 1 Intact Os_TE_232352 Os_TE_232352 Chr6 17472718 17477203 - RETROSAT3_LTR 11537 0.6118 (1822/2978) 1 Intact Os_TE_232366 Os_TE_232351 Chr6 17472533 17472532 - CACTA-I 1124 0.3894 (1148/2948) 0 * Os_TE_232350 Os_TE_232350 Chr6 17472530 17472531 + CACTA-D 1038 0.4006 (1193/2978) 0 * Os_TE_232351 Os_TE_232304 Chr6 17443443 17443442 - MPING 430 0.0003 (1/2983) 0 * * Os_TE_232288 Chr6 17436645 17436644 - NDNA1TNA_OS 334 0.0007 (2/2937) 0 * * Os_TE_232258 Chr6 17426250 17413933 - RETROSAT2LTR 12796 0.2683 (803/2993) 1 Intact * Os_TE_232211 Chr6 17403230 17403231 + RIRE2_LTR 11306 0.0003 (1/2965) 0 * Os_TE_232210 Os_TE_232210 Chr6 17403221 17403220 + RIRE2_LTR 11306 0.0003 (1/2966) 0 * Os_TE_232211 Os_TE_232209 Chr6 17403063 17403064 + INDITTO 263 0.0003 (1/2969) 0 * * Os_TE_232206 Chr6 17402933 17402932 + INDITTO 263 0.0261 (78/2983) 0 * * Os_TE_232196 Chr6 17391571 17400535 - ORSiTERT00100062 5674 0.2653 (788/2970) 1 Intact * Os_TE_232131 Chr6 17369120 17369121 + SEVERIN-2 1952 0.0036 (10/2796) 0 * * Os_TE_232095 Chr6 17351176 17351177 + STOWAWAY51_OS 246 0.0003 (1/2991) 0 * * Os_TE_232064 Chr6 17338411 17338410 + ORSiTERTOOT00034 791 0.0349 (104/2978) 0 * * Os_TE_232060 Chr6 17337284 17337285 + INDITTO 263 0.0024 (7/2965) 0 * Os_TE_232059 Os_TE_232059 Chr6 17337282 17337281 - INDITTO 263 0.0024 (7/2953) 0 * Os_TE_232060 Os_TE_232001 Chr6 17310214 17310215 - SZ-9LTR 965 0.0355 (106/2985) 0 * Os_TE_232000 Os_TE_232000 Chr6 17310210 17310209 + SZ-9LTR 965 0.0349 (104/2978) 0 * Os_TE_232001 Os_TE_231978 Chr6 17299152 17299153 + ORSiCMCM00100019 2717 0.0007 (2/2976) 0 * Os_TE_231977 Os_TE_231977 Chr6 17299148 17299147 - TRUNCATOR2_LTR 2904 0.0007 (2/2969) 0 * Os_TE_231978 Os_TE_231959 Chr6 17292666 17292667 - COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_231958 Os_TE_231958 Chr6 17292662 17292661 + COPIA2-LTR_OS 6433 0.0003 (1/2986) 0 * Os_TE_231959 Os_TE_231931 Chr6 17280408 17280409 + STOWAWAY1_OS 149 0.0003 (1/2995) 0 * * Os_TE_231928 Chr6 17278086 17278087 + OSTE28 298 0.0010 (3/2969) 0 * * Os_TE_231919 Chr6 17268838 17268837 + RIREX_LTR 8828 0.0003 (1/2995) 0 * * Os_TE_231917 Chr6 17266916 17266917 - LINE1-8_OS 7101 0.0040 (12/2982) 0 * * Os_TE_231905 Chr6 17261024 17261025 - RIRE3_LTR 12054 0.0069 (20/2915) 0 * Os_TE_231904 Os_TE_231904 Chr6 17261020 17261019 + RIRE3_LTR 12054 0.0062 (18/2905) 0 * Os_TE_231905 Os_TE_231900 Chr6 17258679 17258680 + SPMLIKE 10989 0.0003 (1/2997) 0 * * Os_TE_231896 Chr6 17257616 17257615 - TRUNCATOR 2918 0.0023 (7/2990) 0 * Os_TE_231895 Os_TE_231895 Chr6 17257615 17257616 + TRUNCATOR 2918 0.0023 (7/2988) 0 * Os_TE_231896 Os_TE_231891 Chr6 17255916 17255915 + SPMLIKE 10989 0.0013 (4/2986) 0 * * Os_TE_231876 Chr6 17248542 17248541 + RIREX_LTR 8828 0.0003 (1/2981) 0 * * Os_TE_231875 Chr6 17248483 17248484 + RIREX_LTR 8828 0.0003 (1/2986) 0 * Os_TE_231874 Os_TE_231874 Chr6 17248479 17248478 - RIREX_LTR 8828 0.0003 (1/2988) 0 * Os_TE_231875 Os_TE_231873 Chr6 17248159 17248158 + ORSgTEMT01601122 212 0.0013 (4/2969) 0 * Os_TE_231872 Os_TE_231872 Chr6 17248156 17248157 + ORSgTEMT01601122 212 0.0017 (5/2976) 0 * Os_TE_231873 Os_TE_231867 Chr6 17247129 17247128 - TRUNCATOR2_LTR 2904 0.0003 (1/2998) 0 * * Os_TE_231801 Chr6 17224009 17224008 + BAJIELTR 4500 0.0020 (6/2971) 0 * * Os_TE_231773 Chr6 17218862 17218863 - ORSgTEMT00600478 361 0.0024 (7/2976) 0 * * Os_TE_231747 Chr6 17211959 17211960 + SPMLIKE 10989 0.0003 (1/2948) 0 * * Os_TE_231744 Chr6 17210795 17210794 + MUDRN5_OS 374 0.0024 (7/2943) 0 * * Os_TE_231725 Chr6 17205177 17205178 + TRUNCATOR 2918 0.0004 (1/2820) 0 * * Os_TE_231718 Chr6 17199540 17199541 - TRUNCATOR2_LTR 2904 0.0261 (75/2872) 0 * Os_TE_231717 Os_TE_231717 Chr6 17199536 17199535 + TRUNCATOR2_LTR 2904 0.0245 (71/2895) 0 * Os_TE_231718 Os_TE_231711 Chr6 17198177 17198178 + INDITTO 263 0.0024 (7/2964) 0 * * Os_TE_231709 Chr6 17196385 17196386 + ORSgTEMT00501035 149 0.0024 (7/2933) 0 * Os_TE_231708 Os_TE_231708 Chr6 17196384 17196383 - ORSgTEMT00501568 147 0.0027 (8/2942) 0 * Os_TE_231709 Os_TE_231675 Chr6 17183008 17183009 - CACTA-H 1152 0.0027 (8/2938) 0 * * Os_TE_231673 Chr6 17182405 17182406 + ORSgTEMT00100272 356 0.0024 (7/2977) 0 * * Os_TE_231671 Chr6 17181585 17181586 + ORSiTERTOOT00074 4935 0.0003 (1/2971) 0 * Os_TE_231670 Os_TE_231670 Chr6 17181581 17181580 - ORSiTERTOOT00074 4935 0.0003 (1/2973) 0 * Os_TE_231671 Os_TE_231666 Chr6 17181215 17181214 - OSTE33 1012 0.7226 (2032/2812) 0 * * Os_TE_231665 Chr6 17180839 17180840 - TRUNCATOR2_LTR 2904 0.0010 (3/2882) 0 * * Os_TE_231664 Chr6 17180721 17180722 - ORSgTEMT00500675 140 0.0024 (7/2972) 0 * * Os_TE_231632 Chr6 17171733 17171734 - RETRO2_LTR 12874 0.0292 (66/2260) 0 * Os_TE_231631 Os_TE_231631 Chr6 17171729 17171728 + RETRO2A_LTR 12895 0.0453 (76/1676) 0 * Os_TE_231632 Os_TE_231603 Chr6 17164917 17164918 - COPIA2-LTR_OS 6433 0.0003 (1/2981) 0 * * Os_TE_231567 Chr6 17152200 17152199 + DS-RICE4N 715 0.0003 (1/2967) 0 * * Os_TE_231565 Chr6 17150736 17150735 + ORSgTEMT00502544 146 0.0003 (1/2923) 0 * * Os_TE_231510 Chr6 17125799 17125800 - MDR2 6967 0.0003 (1/2968) 0 * * Os_TE_231502 Chr6 17123880 17123881 + ORSiTERTOOT00028 8600 0.3641 (1078/2961) 0 * Os_TE_231501 Os_TE_231501 Chr6 17123878 17123877 - RETROSAT2LTR 12796 0.3634 (1083/2980) 0 * Os_TE_231502 Os_TE_231490 Chr6 17121518 17121519 - ORSgTERT00201216 11284 0.0013 (4/2988) 0 * Os_TE_231489 Os_TE_231489 Chr6 17121514 17121513 - RIRE2_LTR 11306 0.0013 (4/2987) 0 * Os_TE_231490 Os_TE_231464 Chr6 17114765 17114764 - RETROSAT2LTR 12796 0.0004 (1/2485) 0 * * Os_TE_231462 Chr6 17114240 17114239 - TELIA 141 0.0003 (1/2878) 0 * * Os_TE_231427 Chr6 17104350 17104351 - ENSPM4_OS 11610 0.0277 (83/2994) 0 * * Os_TE_231426 Chr6 17104208 17104209 + SEVERIN-2 1952 0.3564 (1066/2991) 0 * * Os_TE_231386 Chr6 17081419 17092720 - RIRE2_LTR 11306 0.2566 (765/2981) 1 Intact * Os_TE_231345 Chr6 17062247 17062248 - OSR3_LTR 5201 0.0006 (1/1798) 0 * * Os_TE_231336 Chr6 17056505 17056504 - RIRE5-LTR_OS 6427 0.0003 (1/2994) 0 * * Os_TE_231334 Chr6 17054407 17054406 + OLO24 345 0.0010 (3/2864) 0 * * Os_TE_231333 Chr6 17054231 17053638 - ORSiTETNOOT00169 3649 0.2482 (733/2953) 1 Intact * Os_TE_231320 Chr6 17049316 17049317 + RETROSAT2LTR 12796 0.0245 (73/2984) 0 * Os_TE_231319 Os_TE_231319 Chr6 17049314 17049313 - RETROSAT2LTR 12796 0.0264 (79/2991) 0 * Os_TE_231320 Os_TE_231310 Chr6 17047166 17047165 - MERMITE18D 1491 0.0007 (2/2994) 0 * * Os_TE_231308 Chr6 17046385 17046384 - COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * * Os_TE_231307 Chr6 17044025 17044024 + ORSgTEMT01602181 239 0.0020 (6/2985) 0 * Os_TE_231306 Os_TE_231306 Chr6 17044012 17044013 - ORSgTEMT01601432 239 0.0023 (7/2989) 0 * Os_TE_231307 Os_TE_231302 Chr6 17043014 17043015 + TRUNCATOR2_LTR 2904 0.0455 (136/2989) 0 * Os_TE_231301 Os_TE_231301 Chr6 17043010 17043009 - TRUNCATOR2_LTR 2904 0.0465 (139/2990) 0 * Os_TE_231302 Os_TE_231236 Chr6 17010219 17010218 + TWIF 586 0.0021 (4/1909) 0 * * Os_TE_231202 Chr6 16986096 16986097 + MDR2 6967 0.0250 (75/2998) 0 * Os_TE_231201 Os_TE_231201 Chr6 16986089 16986088 - MDR2 6967 0.0234 (70/2996) 0 * Os_TE_231202 Os_TE_231193 Chr6 16980715 16974555 - SZ-9LTR 965 0.2713 (778/2868) 1 Intact Os_TE_231191 Os_TE_231191 Chr6 16974555 16980715 + SZ-9LTR 965 0.2554 (749/2933) 1 Intact Os_TE_231193 Os_TE_231185 Chr6 16971363 16971364 - MPING 430 0.0005 (1/1886) 0 * Os_TE_231184 Os_TE_231184 Chr6 16971361 16971360 + MPING 430 0.0005 (1/1905) 0 * Os_TE_231185 Os_TE_231175 Chr6 16967115 16967114 - MDR2 6967 0.0047 (9/1908) 0 * * Os_TE_231110 Chr6 16938287 16938286 - COPI2_LTR 4733 0.0003 (1/2986) 0 * * Os_TE_231104 Chr6 16937315 16937316 + RETRO2_LTR 12874 0.2813 (839/2983) 0 * Os_TE_231103 Os_TE_231103 Chr6 16937311 16937310 - RETRO2_LTR 12874 0.2829 (845/2987) 0 * Os_TE_231104 Os_TE_231102 Chr6 16937094 16937095 + RIRE3_LTR 12054 0.0054 (16/2973) 0 * Os_TE_231101 Os_TE_231101 Chr6 16937090 16937089 - RIRE3_LTR 12054 0.0060 (18/2976) 0 * Os_TE_231102 Os_TE_231036 Chr6 16900024 16900025 + TRUNCATOR 2918 0.4318 (1282/2969) 0 * * Os_TE_231033 Chr6 16897372 16897371 - COPIA2-LTR_OS 6433 0.0003 (1/2972) 0 * * Os_TE_231007 Chr6 16886413 16886414 - AMYLTP 383 0.0003 (1/2946) 0 * Os_TE_231006 Os_TE_231006 Chr6 16886405 16886404 + AMYLTP 383 0.0003 (1/2942) 0 * Os_TE_231007 Os_TE_230988 Chr6 16878175 16878174 + ORSiTERTOOT00332 5395 0.0017 (5/2999) 0 * * Os_TE_230987 Chr6 16877382 16877383 - SC-4_LTR 5218 0.0010 (3/2996) 0 * Os_TE_230986 Os_TE_230986 Chr6 16877378 16877377 + SC-4_LTR 5218 0.0010 (3/2995) 0 * Os_TE_230987 Os_TE_230935 Chr6 16851959 16851958 - ORSiTETNOOT00200 3563 0.0003 (1/2964) 0 * * Os_TE_230925 Chr6 16849719 16849720 - RIRE2_LTR 11306 0.0068 (20/2937) 0 * * Os_TE_230897 Chr6 16824104 16824105 + COPIA2-LTR_OS 6433 0.0050 (15/2989) 0 * Os_TE_230896 Os_TE_230896 Chr6 16824100 16824099 - COPIA2-LTR_OS 6433 0.0054 (16/2989) 0 * Os_TE_230897 Os_TE_230883 Chr6 16816341 16816342 + COPI2_LTR 4733 0.0003 (1/2975) 0 * Os_TE_230882 Os_TE_230882 Chr6 16816337 16816336 - COPI2_LTR 4733 0.0003 (1/2982) 0 * Os_TE_230883 Os_TE_230877 Chr6 16815364 16815363 + OSTE9 421 0.6522 (1870/2867) 0 * * Os_TE_230861 Chr6 16811733 16811734 + COPIA2-LTR_OS 6433 0.0034 (10/2911) 0 * Os_TE_230860 Os_TE_230860 Chr6 16811729 16811728 - COPIA2-LTR_OS 6433 0.0034 (10/2981) 0 * Os_TE_230861 Os_TE_230857 Chr6 16811314 16811052 - INDITTO 263 0.2766 (817/2954) 1 Intact Os_TE_230856 Os_TE_230856 Chr6 16811052 16811314 - ORSgTETNOOT00053 263 0.2774 (822/2963) 1 Intact Os_TE_230857 Os_TE_230844 Chr6 16806608 16806607 + ORSgTEMT02400049 221 0.4151 (1174/2828) 0 * * Os_TE_230835 Chr6 16802826 16802827 + ORSgTETNOOT00908 242 0.6586 (1948/2958) 0 * Os_TE_230834 Os_TE_230834 Chr6 16802821 16802820 + ORSgTETNOOT01219 231 0.6546 (1920/2933) 0 * Os_TE_230835 Os_TE_230832 Chr6 16802635 16802636 + F770 284 0.2893 (859/2969) 0 * Os_TE_230831 Os_TE_230831 Chr6 16802633 16802632 - F770 284 0.2847 (845/2968) 0 * Os_TE_230832 Os_TE_230799 Chr6 16786005 16786004 + COPIA1-LTR_OS 9292 0.0013 (4/2990) 0 * * Os_TE_230792 Chr6 16781277 16781276 + ORSgTEMT01602413 239 0.0007 (2/2956) 0 * Os_TE_230791 Os_TE_230791 Chr6 16781274 16781275 - ORSgTEMT01602413 239 0.0017 (5/2950) 0 * Os_TE_230792 Os_TE_230761 Chr6 16752499 16752500 + RIREX_LTR 8828 0.2653 (787/2967) 0 * Os_TE_230760 Os_TE_230760 Chr6 16752495 16752494 - RIREX_LTR 8828 0.2619 (779/2974) 0 * Os_TE_230761 Os_TE_230686 Chr6 16717720 16717721 + ORSiTERTOOT00028 8600 0.0030 (9/2987) 0 * Os_TE_230685 Os_TE_230685 Chr6 16717716 16717715 - TRUNCATOR2_LTR 2904 0.0027 (8/2987) 0 * Os_TE_230686 Os_TE_230640 Chr6 16699347 16699348 - STOWAWAY43_OS 233 0.0007 (2/2849) 0 * * Os_TE_230618 Chr6 16695624 16695625 - TRUNCATOR 2918 0.0017 (5/2913) 0 * * Os_TE_230611 Chr6 16693553 16693554 - ORSgTERT00201216 11284 0.4257 (1111/2610) -1 * * Os_TE_230605 Chr6 16692041 16692042 + RIRE3_LTR 12054 0.0003 (1/2981) 0 * Os_TE_230604 Os_TE_230604 Chr6 16692037 16692036 - RIRE3_LTR 12054 0.0003 (1/2982) 0 * Os_TE_230605 Os_TE_230597 Chr6 16690366 16690365 - COPI2_LTR 4733 0.0003 (1/2976) 0 * * Os_TE_230587 Chr6 16686870 16686869 - TRUNCATOR2_LTR 2904 0.0003 (1/2997) 0 * * Os_TE_230582 Chr6 16680881 16680880 + COPIA2-LTR_OS 6433 0.0003 (1/2983) 0 * * Os_TE_230581 Chr6 16680302 16680303 + COPI2_LTR 4733 0.0040 (12/2987) 0 * Os_TE_230580 Os_TE_230580 Chr6 16680298 16680297 - COPI2_LTR 4733 0.0044 (13/2985) 0 * Os_TE_230581 Os_TE_230555 Chr6 16662657 16662658 - RIRE2_LTR 11306 0.2742 (728/2655) 0 * Os_TE_230554 Os_TE_230554 Chr6 16662653 16662652 + RIRE2_LTR 11306 0.2957 (785/2655) 0 * Os_TE_230555 Os_TE_230533 Chr6 16655677 16655252 - RIREX_LTR 8828 0.3151 (839/2663) 1 Solo_LTR Os_TE_230531 Os_TE_230531 Chr6 16655255 16655677 + RIREX_LTR 8828 0.3096 (839/2710) 1 Solo_LTR Os_TE_230533 Os_TE_230521 Chr6 16652509 16652510 + ORSiTERTOOT00296 5553 0.0318 (95/2986) 0 * Os_TE_230520 Os_TE_230520 Chr6 16652505 16652504 - SC-3_LTR 5748 0.0314 (94/2989) 0 * Os_TE_230521 Os_TE_230518 Chr6 16652102 16652103 - SC-3_LTR 5748 0.0003 (1/2986) 0 * Os_TE_230517 Os_TE_230517 Chr6 16652098 16652097 + ORSiTERTOOT00296 5553 0.0003 (1/2985) 0 * Os_TE_230518 Os_TE_230505 Chr6 16647835 16647836 - AMYLTP 383 0.0048 (14/2944) 0 * Os_TE_230504 Os_TE_230504 Chr6 16647827 16647826 + AMYLTP 383 0.0058 (17/2935) 0 * Os_TE_230505 Os_TE_230491 Chr6 16640687 16640686 + ORSiTERTOOT00226 792 0.0007 (2/2851) 0 * * Os_TE_230451 Chr6 16619415 16619414 - MDR1 7383 0.0003 (1/2915) 0 * * Os_TE_230448 Chr6 16618649 16618650 - ORSiTETNOOT00216 3569 0.3534 (1037/2934) 0 * Os_TE_230447 Os_TE_230447 Chr6 16618642 16618641 + TWIFBIG 3567 0.3389 (971/2865) 0 * Os_TE_230448 Os_TE_230435 Chr6 16615383 16615384 - SC-3_LTR 5748 0.0007 (2/2997) 0 * Os_TE_230434 Os_TE_230434 Chr6 16615379 16615378 + ORSiTERTOOT00296 5553 0.0007 (2/2998) 0 * Os_TE_230435 Os_TE_230432 Chr6 16613468 16613469 - SC-3_LTR 5748 0.0104 (31/2993) 0 * Os_TE_230431 Os_TE_230431 Chr6 16613464 16613463 + ORSiTERTOOT00296 5553 0.0104 (31/2991) 0 * Os_TE_230432 Os_TE_230430 Chr6 16613089 16613090 - SC-3_LTR 5748 0.0003 (1/2993) 0 * Os_TE_230429 Os_TE_230429 Chr6 16613085 16613084 + ORSiTERTOOT00296 5553 0.0003 (1/2991) 0 * Os_TE_230430 Os_TE_230395 Chr6 16597462 16597463 - MPING 430 0.0003 (1/2953) 0 * Os_TE_230394 Os_TE_230394 Chr6 16597460 16597459 + MPING 430 0.0003 (1/2952) 0 * Os_TE_230395 Os_TE_230358 Chr6 16576558 16576559 + ORSiTERTOOT00027 10853 0.2872 (856/2981) 0 * Os_TE_230357 Os_TE_230357 Chr6 16576554 16576553 - RIRE3A_LTR 10580 0.2910 (868/2983) 0 * Os_TE_230358 Os_TE_230356 Chr6 16576550 16576551 + RIRE3A_LTR 10580 0.2867 (855/2982) 0 * * Os_TE_230355 Chr6 16576532 16576531 + RIRE3A_LTR 10580 0.0004 (1/2751) 0 * * Os_TE_230329 Chr6 16568411 16568412 + COPIA2-LTR_OS 6433 0.0013 (4/2986) 0 * * Os_TE_230327 Chr6 16568391 16568392 - ORSgTEMT02400179 221 0.0003 (1/2980) 0 * * Os_TE_230253 Chr6 16541352 16541353 - SC-8_LTR 4951 0.0010 (3/2995) 0 * Os_TE_230252 Os_TE_230252 Chr6 16541348 16541347 + SC-8_LTR 4951 0.0010 (3/2995) 0 * Os_TE_230253 Os_TE_230217 Chr6 16533298 16533299 - CLOUD 734 0.5460 (1087/1991) 0 * * Os_TE_230208 Chr6 16531265 16531112 - ORSgTEMT01701882 154 0.6429 (1919/2985) 1 Intact * Os_TE_230191 Chr6 16511372 16511373 + ORSiTERTOOT00296 5553 0.0003 (1/2864) 0 * Os_TE_230190 Os_TE_230190 Chr6 16511368 16511367 - SC-3_LTR 5748 0.0003 (1/2995) 0 * Os_TE_230191 Os_TE_230176 Chr6 16503577 16503578 - TRUNCATOR2_LTR 2904 0.0030 (9/2975) 0 * * Os_TE_230174 Chr6 16502605 16502449 + UNIQUE 158 0.6404 (1909/2981) 1 Intact * Os_TE_230173 Chr6 16502465 16502466 + ORSgTEMT00101542 317 0.0005 (1/1948) 0 * * Os_TE_230172 Chr6 16502449 16502605 - UNIQUE 158 0.6431 (1919/2984) 1 Intact * Os_TE_230171 Chr6 16502291 16502292 - OLO24 345 0.3602 (1058/2937) 0 * * Os_TE_230145 Chr6 16486940 16486941 - RIRE5-LTR_OS 6427 0.5562 (1133/2037) 0 * Os_TE_230144 Os_TE_230144 Chr6 16486933 16486932 + RIRE5-LTR_OS 6427 0.5466 (1103/2018) 0 * Os_TE_230145 Os_TE_230143 Chr6 16485883 16485884 + OSTONOR1_LTR 6440 0.0369 (75/2032) 0 * Os_TE_230142 Os_TE_230142 Chr6 16485879 16485878 - OSTONOR1_LTR 6440 0.0379 (77/2034) 0 * Os_TE_230143 Os_TE_230141 Chr6 16485079 16485080 - SZ-22_LTR 4403 0.0013 (1/764) 0 * Os_TE_230140 Os_TE_230140 Chr6 16485075 16485074 + ORSiTERTOOT00226 792 0.0025 (2/787) 0 * Os_TE_230141 Os_TE_230112 Chr6 16465825 16465826 - COPIA2-LTR_OS 6433 0.0010 (3/2992) 0 * * Os_TE_230102 Chr6 16463121 16463120 + RIRE3A_LTR 10580 0.3923 (1094/2789) 0 * * Os_TE_230032 Chr6 16431313 16431314 + ORSgTERT00200498 797 0.0003 (1/2923) 0 * * Os_TE_230027 Chr6 16429978 16429979 - ORSgTEMT00900099 250 0.3809 (1111/2917) 0 * * Os_TE_230003 Chr6 16425073 16425074 - OSCOPIA1_LTR 4754 0.3813 (1116/2927) 0 * * Os_TE_229999 Chr6 16423061 16423062 - ORSgTEMT02000041 194 0.0031 (9/2912) 0 * * Os_TE_229957 Chr6 16399179 16399180 + ORSiTERTOOT00226 792 0.0003 (1/2890) 0 * Os_TE_229956 Os_TE_229956 Chr6 16399175 16399174 - SZ-22_LTR 4403 0.0003 (1/2885) 0 * Os_TE_229957 Os_TE_229939 Chr6 16386726 16386725 + COPIA2-LTR_OS 6433 0.0007 (2/2998) 0 * * Os_TE_229927 Chr6 16384115 16384114 + MERMITE18C 1473 0.0003 (1/2974) 0 * * Os_TE_229925 Chr6 16381881 16381882 + TWIF 586 0.3442 (960/2789) 0 * * Os_TE_229815 Chr6 16334730 16334731 - ORSiTERTOOT00366 5449 0.2650 (777/2932) 0 * Os_TE_229814 Os_TE_229814 Chr6 16334726 16334725 + ORSiTERTOOT00366 5449 0.2681 (787/2936) 0 * Os_TE_229815 Os_TE_229811 Chr6 16334336 16334335 - SZ-22_LTR 4403 0.0005 (1/2141) 0 * * Os_TE_229806 Chr6 16328708 16328709 + SPMLIKE 10989 0.0003 (1/2984) 0 * * Os_TE_229804 Chr6 16328287 16328288 - HARB-1_OS 5166 0.0007 (2/2979) 0 * * Os_TE_229796 Chr6 16326157 16326158 + ORSiCMCM00100019 2717 0.2637 (789/2992) 0 * Os_TE_229795 Os_TE_229795 Chr6 16326153 16326152 - TRUNCATOR2_LTR 2904 0.2674 (801/2996) 0 * Os_TE_229796 Os_TE_229789 Chr6 16322640 16322641 + GYPSY-A_LTR 8951 0.3997 (1187/2970) 0 * * Os_TE_229786 Chr6 16322383 16322382 - RIRE3_LTR 12054 0.0501 (150/2994) 0 * * Os_TE_229746 Chr6 16311879 16311880 + STOWAWAY50_OS 174 0.0003 (1/2991) 0 * * Os_TE_229706 Chr6 16299639 16299638 - TELIA 141 0.0003 (1/2940) 0 * * Os_TE_229701 Chr6 16292559 16292558 + TWIFB1 3737 0.0030 (9/2965) 0 * * Os_TE_229666 Chr6 16277639 16277640 - RIRE5-LTR_OS 6427 0.0027 (8/2972) 0 * Os_TE_229665 Os_TE_229665 Chr6 16277632 16277631 + RIRE5-LTR_OS 6427 0.0024 (7/2973) 0 * Os_TE_229666 Os_TE_229637 Chr6 16272045 16272046 - COPI2_LTR 4733 0.0003 (1/2956) 0 * Os_TE_229636 Os_TE_229636 Chr6 16272041 16272040 + COPI2_LTR 4733 0.0003 (1/2959) 0 * Os_TE_229637 Os_TE_229635 Chr6 16271995 16271996 + NDNA1TNA_OS 334 0.0216 (64/2957) 0 * Os_TE_229634 Os_TE_229634 Chr6 16271993 16271992 - NDNA1TNA_OS 334 0.0263 (78/2971) 0 * Os_TE_229635 Os_TE_229628 Chr6 16269536 16269537 - COPIA2-LTR_OS 6433 0.0003 (1/2931) 0 * Os_TE_229627 Os_TE_229627 Chr6 16269532 16269531 + COPIA2-LTR_OS 6433 0.0003 (1/2927) 0 * Os_TE_229628 Os_TE_229594 Chr6 16254776 16254775 + TRUNCATOR 2918 0.0254 (76/2994) 0 * * Os_TE_229591 Chr6 16253711 16253712 + ORSiTERTOOT00226 792 0.0003 (1/2993) 0 * Os_TE_229590 Os_TE_229590 Chr6 16253707 16253706 - SZ-22_LTR 4403 0.0003 (1/2994) 0 * Os_TE_229591 Os_TE_229578 Chr6 16249916 16249917 - TRUNCATOR 2918 0.0013 (4/2990) 0 * * Os_TE_229569 Chr6 16246982 16246983 - ORSgTERT00201216 11284 0.0017 (5/2891) 0 * Os_TE_229568 Os_TE_229568 Chr6 16246978 16246977 - RIRE2_LTR 11306 0.0017 (5/2892) 0 * Os_TE_229569 Os_TE_229525 Chr6 16220504 16220505 - SZ-22_LTR 4403 0.0003 (1/2975) 0 * Os_TE_229524 Os_TE_229524 Chr6 16220500 16220499 + ORSiTERTOOT00226 792 0.0003 (1/2980) 0 * Os_TE_229525 Os_TE_229508 Chr6 16215579 16215580 - RETROSAT2LTR 12796 0.4226 (1264/2991) 0 * * Os_TE_229503 Chr6 16213770 16213771 + ORSiTERTOOT00226 792 0.0075 (22/2946) 0 * Os_TE_229502 Os_TE_229502 Chr6 16213766 16213765 - SZ-22_LTR 4403 0.0075 (22/2941) 0 * Os_TE_229503 Os_TE_229501 Chr6 16213576 16213575 + ORSgTEMT02000045 197 0.3817 (1107/2900) 0 * * Os_TE_229469 Chr6 16200012 16200013 + ORSgTETNOOT00908 242 0.0010 (3/2982) 0 * Os_TE_229468 Os_TE_229468 Chr6 16200010 16200009 + ORSgTETNOOT00908 242 0.0003 (1/2981) 0 * Os_TE_229469 Os_TE_229359 Chr6 16157692 16157691 + ORSiTERTOOT00226 792 0.0006 (1/1789) 0 * * Os_TE_229349 Chr6 16154281 16154282 - ORSiTERT00200154 9386 0.0005 (1/1920) 0 * * Os_TE_229339 Chr6 16148224 16148225 + COPIA2-LTR_OS 6433 0.0021 (4/1950) 0 * * Os_TE_229293 Chr6 16139637 16139638 - GYPSY1-LTR_OS 8900 0.0015 (3/2063) 0 * Os_TE_229292 Os_TE_229292 Chr6 16139633 16139632 + GYPSY-B_LTR 7068 0.0021 (4/1944) 0 * Os_TE_229293 Os_TE_229269 Chr6 16129571 16129570 - TRUNCATOR2_LTR 2904 0.0003 (1/2928) 0 * * Os_TE_229255 Chr6 16124714 16124713 + RIRE5-LTR_OS 6427 0.0003 (1/2953) 0 * * Os_TE_229252 Chr6 16124514 16124515 + ORSgTEMT01701145 147 0.0019 (2/1057) 0 * * Os_TE_229250 Chr6 16124093 16124094 - ORSgTEMT00901471 236 0.0004 (1/2817) 0 * * Os_TE_229235 Chr6 16121290 16121291 - MuDR4_OS 7610 0.0017 (5/2891) 0 * Os_TE_229234 Os_TE_229234 Chr6 16121284 16121283 - MuDR4_OS 7610 0.0017 (5/2889) 0 * Os_TE_229235 Os_TE_229232 Chr6 16119623 16119624 + RIREX_LTR 8828 0.0003 (1/2921) 0 * Os_TE_229231 Os_TE_229231 Chr6 16119619 16119618 - RIREX_LTR 8828 0.0003 (1/2919) 0 * Os_TE_229232 Os_TE_229195 Chr6 16111752 16111753 + ORSiTERTOOT00028 8600 0.0013 (4/2994) 0 * Os_TE_229194 Os_TE_229194 Chr6 16111748 16111747 - TRUNCATOR2_LTR 2904 0.0017 (5/2995) 0 * Os_TE_229195 Os_TE_229193 Chr6 16111366 16111367 - SZ-50_LTR 11691 0.0014 (4/2932) 0 * * Os_TE_229185 Chr6 16108166 16108167 - ENSPM4_OS 11610 0.0017 (5/2995) 0 * * Os_TE_229166 Chr6 16099532 16094347 - ORSiTERTOOT00327 5186 0.2803 (833/2972) 1 Intact Os_TE_229165 Os_TE_229165 Chr6 16094347 16099532 + ORSiTERTOOT00327 5186 0.2801 (832/2970) 1 Intact Os_TE_229166 Os_TE_229163 Chr6 16094040 16094039 - COPIA2-LTR_OS 6433 0.0013 (4/2993) 0 * * Os_TE_229156 Chr6 16092301 16092300 + SZLTR 1249 0.0226 (67/2971) 0 * * Os_TE_229139 Chr6 16090950 16090949 + TRUNCATOR 2918 0.2632 (785/2983) 0 * Os_TE_229138 Os_TE_229138 Chr6 16090949 16090950 - TRUNCATOR 2918 0.2353 (681/2894) 0 * Os_TE_229139 Os_TE_229085 Chr6 16058694 16058695 - SZ-46LTR 3360 0.0017 (5/2996) 0 * Os_TE_229084 Os_TE_229084 Chr6 16058690 16058689 + SZ-46LTR 3360 0.0013 (4/2992) 0 * Os_TE_229085 Os_TE_229082 Chr6 16055739 16055740 + ORSiTERTOOT00226 792 0.0003 (1/2993) 0 * * Os_TE_228967 Chr6 16014554 16014553 + ORSiTERTOOT00226 792 0.0003 (1/2942) 0 * * Os_TE_228960 Chr6 16010949 16010950 + COPIA2-LTR_OS 6433 0.0013 (4/2993) 0 * Os_TE_228959 Os_TE_228959 Chr6 16010945 16010944 - COPIA2-LTR_OS 6433 0.0013 (4/2993) 0 * Os_TE_228960 Os_TE_228904 Chr6 15982805 15982806 + ORSgTEMT00300063 413 0.0003 (1/2984) 0 * * Os_TE_228874 Chr6 15970529 15970530 - RIRE2_LTR 11306 0.0246 (73/2965) 0 * Os_TE_228873 Os_TE_228873 Chr6 15970525 15970524 - ORSgTERT00201216 11284 0.0256 (76/2973) 0 * Os_TE_228874 Os_TE_228810 Chr6 15935019 15935018 + RIREX_LTR 8828 0.0007 (2/2995) 0 * * Os_TE_228788 Chr6 15933103 15933102 - ORSiTETNOOT00200 3563 0.0021 (6/2897) 0 * * Os_TE_228775 Chr6 15924502 15924503 + ORSiTERTOOT00296 5553 0.0003 (1/2996) 0 * Os_TE_228774 Os_TE_228774 Chr6 15924498 15924497 - SC-3_LTR 5748 0.0003 (1/2998) 0 * Os_TE_228775 Os_TE_228760 Chr6 15917701 15917702 - ORSgTERT00201216 11284 0.0258 (77/2981) 0 * Os_TE_228759 Os_TE_228759 Chr6 15917697 15917696 - RIRE2_LTR 11306 0.0248 (74/2985) 0 * Os_TE_228760 Os_TE_228697 Chr6 15898885 15898886 - ORSgTEMT00501087 149 0.7310 (2131/2915) 0 * * Os_TE_228627 Chr6 15869636 15869635 - SZ-54_LTR 5203 0.0003 (1/2989) 0 * * Os_TE_228561 Chr6 15838087 15838086 + ORSiTERTOOT00034 791 0.0003 (1/2957) 0 * * Os_TE_228543 Chr6 15831667 15831666 + TRUNCATOR2_LTR 2904 0.1194 (233/1951) 0 * * Os_TE_228519 Chr6 15825258 15825259 + TRUNCATOR 2918 0.2659 (796/2994) 0 * * Os_TE_228511 Chr6 15823599 15823598 - CRM-LTR_OS 7749 0.0007 (2/2796) 0 * * Os_TE_228500 Chr6 15819883 15819884 - SC-3_LTR 5748 0.0007 (2/2998) 0 * Os_TE_228499 Os_TE_228499 Chr6 15819879 15819878 + ORSiTERTOOT00296 5553 0.0007 (2/2997) 0 * Os_TE_228500 Os_TE_228477 Chr6 15814507 15814508 - SC-3_LTR 5748 0.0003 (1/2996) 0 * Os_TE_228476 Os_TE_228476 Chr6 15814503 15814502 + ORSiTERTOOT00296 5553 0.0003 (1/2995) 0 * Os_TE_228477 Os_TE_228474 Chr6 15814121 15814120 - SC-8_LTR 4951 0.0003 (1/2998) 0 * * Os_TE_228437 Chr6 15793292 15793293 - TRUNCATOR 2918 0.0029 (8/2766) 0 * * Os_TE_228421 Chr6 15786696 15786695 + ORSiTERTOOT00226 792 0.0003 (1/2862) 0 * * Os_TE_228373 Chr6 15760462 15760463 + OSTONOR1_LTR 6440 0.2476 (657/2653) 0 * Os_TE_228372 Os_TE_228372 Chr6 15760458 15760457 - ORSiTERT00100062 5674 0.2628 (762/2899) 0 * Os_TE_228373 Os_TE_228371 Chr6 15760455 15760456 - CRM-LTR_OS 7749 0.0004 (1/2598) 0 * Os_TE_228370 Os_TE_228370 Chr6 15760451 15760450 + CRM-LTR_OS 7749 0.0005 (1/2172) 0 * Os_TE_228371 Os_TE_228366 Chr6 15759328 15759327 + ORSgTETNOOT00908 242 0.0003 (1/2925) 0 * * Os_TE_228365 Chr6 15759318 15759317 - ORSgTEMT02400246 177 0.0003 (1/2895) 0 * * Os_TE_228358 Chr6 15756124 15756123 - TRUNCATOR 2918 0.0027 (8/2996) 0 * Os_TE_228357 Os_TE_228357 Chr6 15756123 15756124 + TRUNCATOR 2918 0.0027 (8/2994) 0 * Os_TE_228358 Os_TE_228344 Chr6 15752315 15752316 + ORSiTERTOOT00226 792 0.0003 (1/2989) 0 * * Os_TE_228343 Chr6 15752141 15752142 - SZ-22_LTR 4403 0.0003 (1/2993) 0 * * Os_TE_228326 Chr6 15743775 15743774 + ORSiTERTOOT00296 5553 0.0003 (1/2983) 0 * Os_TE_228325 Os_TE_228325 Chr6 15743758 15743759 - SC-3_LTR 5748 0.0007 (2/2988) 0 * Os_TE_228326 Os_TE_228317 Chr6 15735171 15735170 + ORSgTETN00100092 209 0.0007 (2/2997) 0 * * Os_TE_228272 Chr6 15724632 15724633 - MuDR3_OS 8604 0.6294 (1766/2806) 0 * Os_TE_228271 Os_TE_228271 Chr6 15724625 15724624 + MuDR3_OS 8604 0.6529 (1934/2962) 0 * Os_TE_228272 Os_TE_228263 Chr6 15722053 15722052 + TRUNCATOR 2918 0.3739 (1112/2974) 0 * Os_TE_228262 Os_TE_228262 Chr6 15722052 15722053 - TRUNCATOR 2918 0.3608 (1060/2938) 0 * Os_TE_228263 Os_TE_228260 Chr6 15721103 15721104 + COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_228259 Os_TE_228259 Chr6 15721099 15721098 - COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_228260 Os_TE_228257 Chr6 15720619 15720620 - SZ-22_LTR 4403 0.0013 (4/2988) 0 * Os_TE_228256 Os_TE_228256 Chr6 15720615 15720614 + ORSiTERTOOT00226 792 0.0013 (4/2989) 0 * Os_TE_228257 Os_TE_228165 Chr6 15694105 15694104 + TRUNCATOR 2918 0.0027 (8/2999) 0 * * Os_TE_228151 Chr6 15691626 15691625 + RIRE3_LTR 12054 0.0255 (76/2983) 0 * * Os_TE_228057 Chr6 15657548 15657549 - SC-3_LTR 5748 0.0010 (3/2986) 0 * Os_TE_228056 Os_TE_228056 Chr6 15657544 15657543 + ORSiTERTOOT00296 5553 0.0013 (4/2976) 0 * Os_TE_228057 Os_TE_227963 Chr6 15630762 15630763 + COPIA2-LTR_OS 6433 0.0007 (2/2990) 0 * Os_TE_227962 Os_TE_227962 Chr6 15630758 15630757 - COPIA2-LTR_OS 6433 0.0007 (2/2990) 0 * Os_TE_227963 Os_TE_227930 Chr6 15615524 15615525 - RIRE3A_LTR 10580 0.0010 (3/2917) 0 * * Os_TE_227919 Chr6 15612826 15612827 + OSMU4 4731 0.0013 (4/2979) 0 * Os_TE_227918 Os_TE_227918 Chr6 15612817 15612816 - OSMU10 1143 0.0013 (4/2982) 0 * Os_TE_227919 Os_TE_227916 Chr6 15612344 15612343 - SZ-22_LTR 4403 0.0005 (1/1926) 0 * * Os_TE_227914 Chr6 15612213 15612212 - RIRE3A_LTR 10580 0.0010 (3/2982) 0 * * Os_TE_227913 Chr6 15612203 15612202 + RIREX_LTR 8828 0.0003 (1/2981) 0 * * Os_TE_227884 Chr6 15603789 15603790 + COPIA2-LTR_OS 6433 0.0003 (1/2983) 0 * Os_TE_227883 Os_TE_227883 Chr6 15603785 15603784 - COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * Os_TE_227884 Os_TE_227874 Chr6 15600956 15600955 + ORSgTEMT02400041 225 0.3973 (1180/2970) 0 * Os_TE_227873 Os_TE_227873 Chr6 15600954 15600955 - ORSgTEMT02400179 221 0.3972 (1186/2986) 0 * Os_TE_227874 Os_TE_227872 Chr6 15600333 15600334 - SZ-40LTR 2465 0.0003 (1/2995) 0 * * Os_TE_227851 Chr6 15592436 15592437 + ORSiTERTOOT00226 792 0.0010 (3/2993) 0 * * Os_TE_227722 Chr6 15544895 15544894 + SZ-22_LTR 4403 0.0239 (71/2968) 0 * * Os_TE_227589 Chr6 15500110 15500109 + ORSiTERT00200069 6058 0.0003 (1/2885) 0 * * Os_TE_227583 Chr6 15491964 15491965 + ORSiTERTOOT00226 792 0.0010 (3/2984) 0 * Os_TE_227582 Os_TE_227582 Chr6 15491960 15491959 - SZ-22_LTR 4403 0.0010 (3/2980) 0 * Os_TE_227583 Os_TE_227455 Chr6 15420703 15420704 + ORSiTERTOOT00296 5553 0.0003 (1/2980) 0 * Os_TE_227454 Os_TE_227454 Chr6 15420699 15420698 - SC-3_LTR 5748 0.0003 (1/2976) 0 * Os_TE_227455 Os_TE_227418 Chr6 15409411 15409412 + ORSiTERTOOT00226 792 0.0003 (1/2992) 0 * * Os_TE_227349 Chr6 15385769 15385770 + MPING 430 0.0003 (1/2917) 0 * * Os_TE_227342 Chr6 15384369 15384370 - SZ-22_LTR 4403 0.3779 (1126/2980) 0 * Os_TE_227341 Os_TE_227341 Chr6 15384365 15384364 + ORSiTERTOOT00034 791 0.3730 (1109/2973) 0 * Os_TE_227342 Os_TE_227340 Chr6 15383664 15383665 - COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_227339 Os_TE_227339 Chr6 15383660 15383659 + COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_227340 Os_TE_227297 Chr6 15371416 15371415 + CRM-LTR_OS 7749 0.2621 (782/2984) 0 * * Os_TE_227293 Chr6 15370788 15370787 + SETARIA2 1142 0.0017 (5/2940) 0 * * Os_TE_227237 Chr6 15344665 15344666 - SZ-22_LTR 4403 0.2664 (797/2992) 0 * Os_TE_227236 Os_TE_227236 Chr6 15344661 15344660 + ORSiTERTOOT00034 791 0.2692 (804/2987) 0 * Os_TE_227237 Os_TE_227199 Chr6 15330801 15330802 + ORSiTERTOOT00097 759 0.0003 (1/2997) 0 * Os_TE_227198 Os_TE_227198 Chr6 15330797 15330796 - SZ-22_LTR 4403 0.0003 (1/2996) 0 * Os_TE_227199 Os_TE_227197 Chr6 15330654 15330653 + CACTA-B 1103 0.0013 (4/2997) 0 * * Os_TE_227143 Chr6 15313070 15313071 - RIREX_LTR 8828 0.0003 (1/2984) 0 * Os_TE_227142 Os_TE_227142 Chr6 15313066 15313065 + RIREX_LTR 8828 0.0003 (1/2985) 0 * Os_TE_227143 Os_TE_226882 Chr6 15197546 15197547 - RIRE3_LTR 12054 0.0003 (1/2960) 0 * * Os_TE_226843 Chr6 15180179 15175773 - SZ-22_LTR 4403 0.2795 (826/2955) 1 Intact * Os_TE_226821 Chr6 15171481 15171480 - ORSgTEMT01601208 238 0.6956 (1990/2861) 0 * * Os_TE_226811 Chr6 15167043 15167044 - TRUNCATOR 2918 0.2961 (69/233) -1 * * Os_TE_226793 Chr6 15155485 15155486 - CPSC2_LTR 5202 0.0021 (4/1883) 0 * * Os_TE_226665 Chr6 15086742 15086743 - RETRO1_LTR 8314 0.0003 (1/2933) 0 * Os_TE_226664 Os_TE_226664 Chr6 15086738 15086737 + RETRO2A_LTR 12895 0.0003 (1/2933) 0 * Os_TE_226665 Os_TE_226325 Chr6 14939497 14939496 - SZ-22_LTR 4403 0.0003 (1/2982) 0 * * Os_TE_226197 Chr6 14881951 14881952 + RIREX_LTR 8828 0.0003 (1/2973) 0 * * Os_TE_226194 Chr6 14880953 14880954 + COPIA2-LTR_OS 6433 0.0010 (3/2969) 0 * Os_TE_226193 Os_TE_226193 Chr6 14880949 14880948 - COPIA2-LTR_OS 6433 0.0010 (3/2960) 0 * Os_TE_226194 Os_TE_226192 Chr6 14880169 14879113 - DASIA-2 1198 0.2771 (805/2905) 1 Intact Os_TE_226189 Os_TE_226189 Chr6 14879113 14880169 + DASIA-2 1198 0.2488 (700/2813) -1 Intact Os_TE_226192 Os_TE_226177 Chr6 14877265 14877264 - CRM-LTR_OS 7749 0.0246 (73/2971) 0 * * Os_TE_226165 Chr6 14872174 14872175 + ORSiTERTOOT00226 792 0.0010 (3/2998) 0 * * Os_TE_226123 Chr6 14853977 14853978 + RIRE3_LTR 12054 0.0485 (144/2970) 0 * Os_TE_226122 Os_TE_226122 Chr6 14853973 14853972 - RIRE3_LTR 12054 0.0501 (149/2974) 0 * Os_TE_226123 Os_TE_225989 Chr6 14812006 14812007 + ORSiTERTOOT00097 759 0.3727 (1112/2984) 0 * Os_TE_225988 Os_TE_225988 Chr6 14812002 14812001 + ORSiTERTOOT00034 791 0.3715 (1109/2985) 0 * Os_TE_225989 Os_TE_225934 Chr6 14790633 14790632 + ORSiTERTOOT00226 792 0.0003 (1/2914) 0 * * Os_TE_225875 Chr6 14766010 14766009 + RIRE2_LTR 11306 0.0003 (1/2959) 0 * * Os_TE_225776 Chr6 14742900 14742901 - SZ-67LTR 1540 0.0661 (151/2284) 0 * * Os_TE_225547 Chr6 14655859 14655860 + CRM-LTR_OS 7749 0.0003 (1/2956) 0 * * Os_TE_225516 Chr6 14648311 14648310 + ORSiTERTOOT00097 759 0.0004 (1/2779) 0 * * Os_TE_225513 Chr6 14647559 14647558 + ORSiTERTOOT00226 792 0.0132 (39/2954) 0 * * Os_TE_225512 Chr6 14647349 14642049 + RIREX_LTR 8828 0.1208 (358/2964) 1 Intact Os_TE_225511 Os_TE_225511 Chr6 14642049 14647349 - RIREX_LTR 8828 0.1204 (357/2966) 1 Intact Os_TE_225512 Os_TE_225461 Chr6 14612616 14612617 + OSMU5 4881 0.0431 (45/1045) 0 * Os_TE_225460 Os_TE_225460 Chr6 14612612 14612611 - OSTE15 1168 0.0451 (47/1042) 0 * Os_TE_225461 Os_TE_225340 Chr6 14544589 14544590 - ORSgTERT00201216 11284 0.0030 (8/2630) 0 * Os_TE_225339 Os_TE_225339 Chr6 14544586 14544585 - RIRE2_LTR 11306 0.0027 (8/2965) 0 * Os_TE_225340 Os_TE_225272 Chr6 14525200 14525201 + ORSiTERTOOT00034 791 0.0030 (9/2985) 0 * Os_TE_225271 Os_TE_225271 Chr6 14525196 14525195 - SZ-22_LTR 4403 0.0034 (10/2985) 0 * Os_TE_225272 Os_TE_225266 Chr6 14523591 14523592 + TRUNCATOR2_LTR 2904 0.0003 (1/2992) 0 * Os_TE_225265 Os_TE_225265 Chr6 14523587 14523586 - TRUNCATOR2_LTR 2904 0.0003 (1/2992) 0 * Os_TE_225266 Os_TE_225262 Chr6 14523092 14523093 - GYPSY-A_LTR 8951 0.0111 (33/2984) 0 * Os_TE_225261 Os_TE_225261 Chr6 14523088 14523087 + SZ-40LTR 2465 0.0104 (31/2992) 0 * Os_TE_225262 Os_TE_225210 Chr6 14510791 14510792 - RIRE2_LTR 11306 0.0007 (2/2980) 0 * * Os_TE_225197 Chr6 14503915 14503916 - SZ-22_LTR 4403 0.0027 (8/2989) 0 * * Os_TE_225193 Chr6 14503227 14503228 + RIREX_LTR 8828 0.0288 (86/2988) 0 * Os_TE_225192 Os_TE_225192 Chr6 14503223 14503222 - RIREX_LTR 8828 0.0291 (87/2988) 0 * Os_TE_225193 Os_TE_225186 Chr6 14501272 14501271 + ORSiTERT00200145 12238 0.2597 (775/2984) 0 * * Os_TE_225015 Chr6 14449357 14449356 - TRUNCATOR 2918 0.0011 (3/2819) 0 * * Os_TE_224962 Chr6 14428829 14428830 - ORSiTETNOOT00134 607 0.0229 (68/2964) 0 * * Os_TE_224950 Chr6 14419014 14419015 + ORSiTERTOOT00085 785 0.0010 (3/2979) 0 * * Os_TE_224948 Chr6 14418085 14418086 - MPING 430 0.0003 (1/2981) 0 * Os_TE_224947 Os_TE_224947 Chr6 14418083 14418082 + MPING 430 0.0003 (1/2982) 0 * Os_TE_224948 Os_TE_224912 Chr6 14411998 14411999 + TRUNCATOR 2918 0.3704 (1097/2962) 0 * * Os_TE_224910 Chr6 14411560 14411559 + RIRE3A_LTR 10580 0.0003 (1/2859) 0 * * Os_TE_224905 Chr6 14409962 14409963 - TRUNCATOR2_LTR 2904 0.0003 (1/2942) 0 * * Os_TE_224878 Chr6 14398577 14398578 - RIRE3_LTR 12054 0.6915 (1975/2856) 0 * Os_TE_224877 Os_TE_224877 Chr6 14398573 14398572 + RIRE3_LTR 12054 0.1347 (146/1084) 0 * Os_TE_224878 Os_TE_224871 Chr6 14397921 14397920 - RIREX_LTR 8828 0.0004 (1/2856) 0 * * Os_TE_224853 Chr6 14387004 14387005 - STOWAWAY51_OS 246 0.0007 (2/2998) 0 * * Os_TE_224826 Chr6 14374708 14374709 - TRUNCATOR2_LTR 2904 0.0003 (1/2986) 0 * Os_TE_224825 Os_TE_224825 Chr6 14374704 14374703 + ORSiTERTOOT00028 8600 0.0003 (1/2989) 0 * Os_TE_224826 Os_TE_224819 Chr6 14371769 14371768 + RIRE3_LTR 12054 0.0017 (5/2951) 0 * * Os_TE_224759 Chr6 14358822 14358823 - STOWAWAY51_OS 246 0.0003 (1/2919) 0 * * Os_TE_224758 Chr6 14358399 14358400 + ORSgTETNOOT00908 242 0.0003 (1/2978) 0 * * Os_TE_224749 Chr6 14355559 14355558 + ORSgTETNOOT01998 254 0.0260 (77/2965) 0 * * Os_TE_224724 Chr6 14348873 14348874 + ORSgTEMT00100291 345 0.0248 (74/2983) 0 * * Os_TE_224719 Chr6 14346029 14346030 + OSTE20 496 0.0225 (67/2980) 0 * Os_TE_224718 Os_TE_224718 Chr6 14346025 14346024 - OSTE20 496 0.0245 (73/2985) 0 * Os_TE_224719 Os_TE_224672 Chr6 14330969 14330970 + MDM2 312 0.0241 (72/2986) 0 * Os_TE_224671 Os_TE_224671 Chr6 14330961 14330960 + MDM2 312 0.0188 (56/2974) 0 * Os_TE_224672 Os_TE_224626 Chr6 14306465 14306466 - ORSgTEMT01701882 154 0.0249 (74/2969) 0 * * Os_TE_224619 Chr6 14302204 14302205 - ORSgTEMT01600639 228 0.0254 (76/2990) 0 * * Os_TE_224588 Chr6 14290883 14290884 + SZ-38 8643 0.0277 (79/2857) 0 * * Os_TE_224587 Chr6 14288287 14288286 - TYPEH 309 0.0226 (67/2965) 0 * Os_TE_224586 Os_TE_224586 Chr6 14288286 14288287 + ORSgTEMT01900027 302 0.0255 (76/2978) 0 * Os_TE_224587 Os_TE_224585 Chr6 14286908 14286907 - ORSgTEMT01601208 238 0.0246 (73/2972) 0 * * Os_TE_224584 Chr6 14286813 14286814 + CACTA-G1 797 0.0013 (4/2980) 0 * * Os_TE_224575 Chr6 14283832 14283833 - CACTA-J 1159 0.0234 (66/2824) 0 * * Os_TE_224564 Chr6 14280867 14280868 - ORSgTETNOOT00544 147 0.6953 (1985/2855) 0 * * Os_TE_224535 Chr6 14269190 14269189 + TRUNCATOR 2918 0.0017 (5/2985) 0 * * Os_TE_224533 Chr6 14268559 14268560 - RIREX_LTR 8828 0.0003 (1/2989) 0 * Os_TE_224532 Os_TE_224532 Chr6 14268555 14268554 + RIREX_LTR 8828 0.0003 (1/2990) 0 * Os_TE_224533 Os_TE_224471 Chr6 14237276 14237277 + TRUNCATOR 2918 0.6753 (2013/2981) 0 * * Os_TE_224385 Chr6 14197530 14197529 + CACTA-I 1124 0.0254 (75/2950) 0 * * Os_TE_224377 Chr6 14191081 14191082 - AMYLTP 383 0.0017 (5/2968) 0 * Os_TE_224376 Os_TE_224376 Chr6 14191073 14191072 + AMYLTP 383 0.0017 (5/2968) 0 * Os_TE_224377 Os_TE_224368 Chr6 14186051 14186050 + ORSgTEMT01601488 239 0.0228 (68/2976) 0 * Os_TE_224367 Os_TE_224367 Chr6 14186048 14186049 - ORSgTEMT01601208 238 0.0228 (68/2980) 0 * Os_TE_224368 Os_TE_224308 Chr6 14157261 14157262 + ORSgTEMT00101674 340 0.0251 (75/2994) 0 * * Os_TE_224280 Chr6 14153883 14153882 + TRUNCATOR 2918 0.0003 (1/2990) 0 * * Os_TE_224279 Chr6 14152754 14152755 - SZ-22_LTR 4403 0.1806 (540/2990) 0 * Os_TE_224278 Os_TE_224278 Chr6 14152750 14152749 + ORSiTERTOOT00226 792 0.1809 (541/2990) 0 * Os_TE_224279 Os_TE_224274 Chr6 14151433 14151432 - COPIA2-LTR_OS 6433 0.0013 (4/2992) 0 * * Os_TE_224215 Chr6 14117178 14117177 + GYPSY-A_LTR 8951 0.0015 (3/2043) 0 * * Os_TE_224213 Chr6 14116544 14116543 + RIRE3_LTR 12054 0.6829 (1889/2766) 0 * * Os_TE_224163 Chr6 14101778 14101779 + COPIA2-LTR_OS 6433 0.6860 (1986/2895) 0 * * Os_TE_224144 Chr6 14089819 14089820 - RIRE2_LTR 11306 0.0026 (7/2669) 0 * * Os_TE_224133 Chr6 14083676 14083677 + ORSiTERTOOT00226 792 0.0003 (1/2984) 0 * * Os_TE_224122 Chr6 14082457 14082456 + RIRE2_LTR 11306 0.0004 (1/2810) 0 * * Os_TE_224121 Chr6 14082134 14082135 - EnSpm-14_OS 11216 0.0017 (5/2975) 0 * Os_TE_224120 Os_TE_224120 Chr6 14082132 14082131 + EnSpm-14_OS 11216 0.0017 (5/2982) 0 * Os_TE_224121 Os_TE_224113 Chr6 14079876 14079877 + COPIA2-LTR_OS 6433 0.0003 (1/2920) 0 * Os_TE_224112 Os_TE_224112 Chr6 14079872 14079871 - COPIA2-LTR_OS 6433 0.0003 (1/2927) 0 * Os_TE_224113 Os_TE_224109 Chr6 14076585 14076586 - ORSiTERTOOT00441 4741 0.0003 (1/2935) 0 * Os_TE_224108 Os_TE_224108 Chr6 14076581 14076580 + ORSiTERTOOT00441 4741 0.0003 (1/2933) 0 * Os_TE_224109 Os_TE_224053 Chr6 14065070 14065069 - TRUNCATOR2_LTR 2904 0.0010 (3/2985) 0 * * Os_TE_224029 Chr6 14043531 14043532 - SZ-22_LTR 4403 0.0007 (2/2985) 0 * Os_TE_224028 Os_TE_224028 Chr6 14043527 14043526 + ORSiTERTOOT00226 792 0.0007 (2/2986) 0 * Os_TE_224029 Os_TE_224006 Chr6 14032923 14032924 + RIRE3A_LTR 10580 0.0050 (9/1818) 0 * Os_TE_224005 Os_TE_224005 Chr6 14032919 14032918 - RIRE3A_LTR 10580 0.0038 (7/1823) 0 * Os_TE_224006 Os_TE_223958 Chr6 14024068 14024069 - ORSgTEMT00900402 248 0.0003 (1/2973) 0 * * Os_TE_223953 Chr6 14022808 14022807 - TRUNCATOR 2918 0.0237 (71/2996) 0 * * Os_TE_223936 Chr6 14014425 14014424 + ORSiCMCM00100019 2717 0.0003 (1/2999) 0 * * Os_TE_223875 Chr6 13988051 13988050 + RETRO2A_LTR 12895 0.3745 (1109/2961) 0 * * Os_TE_223847 Chr6 13976209 13976208 - TRUNCATOR2_LTR 2904 0.0013 (4/2989) 0 * * Os_TE_223837 Chr6 13970221 13970222 - EnSpm-15_OS 8871 0.0256 (76/2966) 0 * * Os_TE_223818 Chr6 13967407 13967408 + RIRE3_LTR 12054 0.0017 (5/2985) 0 * Os_TE_223817 Os_TE_223817 Chr6 13967403 13967402 - RIRE3_LTR 12054 0.0017 (5/2993) 0 * Os_TE_223818 Os_TE_223801 Chr6 13958438 13958439 - ORSiTERT00200154 9386 0.0244 (73/2992) 0 * Os_TE_223800 Os_TE_223800 Chr6 13958432 13958431 + TRUNCATOR 2918 0.0254 (76/2993) 0 * Os_TE_223801 Os_TE_223775 Chr6 13949400 13949401 - ORSgTEMT00900099 250 0.0004 (1/2837) 0 * * Os_TE_223760 Chr6 13944115 13937660 + RIRE5-LTR_OS 6427 0.2724 (810/2974) 1 Intact Os_TE_223753 Os_TE_223753 Chr6 13937657 13944115 - SZ-14LTR 1193 0.2781 (832/2992) 1 Intact Os_TE_223760 Os_TE_223746 Chr6 13936063 13936062 + SZ-17_LTR 3387 0.0003 (1/2866) 0 * * Os_TE_223719 Chr6 13917055 13917056 - RETRO2_LTR 12874 0.6468 (1925/2976) 0 * * Os_TE_223713 Chr6 13914627 13914628 - RIREX_LTR 8828 0.0013 (4/2967) 0 * * Os_TE_223700 Chr6 13907251 13907252 + ORSiTERTOOT00226 792 0.0003 (1/2910) 0 * Os_TE_223699 Os_TE_223699 Chr6 13907247 13907246 - SZ-22_LTR 4403 0.0003 (1/2906) 0 * Os_TE_223700 Os_TE_223681 Chr6 13894417 13894418 + SEVERIN-2 1952 0.0234 (69/2955) 0 * * Os_TE_223679 Chr6 13893964 13893963 + TRUNCATOR 2918 0.6533 (1941/2971) 0 * Os_TE_223678 Os_TE_223678 Chr6 13893962 13893963 - TRUNCATOR 2918 0.6418 (1867/2909) 0 * Os_TE_223679 Os_TE_223629 Chr6 13875701 13875702 + SPMLIKE 10989 0.0036 (4/1105) 0 * Os_TE_223628 Os_TE_223628 Chr6 13875699 13875698 - ORSgTETN00200001 10994 0.0037 (4/1080) 0 * Os_TE_223629 Os_TE_223585 Chr6 13858353 13858354 - COPIA2-LTR_OS 6433 0.0011 (1/938) 0 * * Os_TE_223555 Chr6 13844062 13844061 - COPIA2-LTR_OS 6433 0.0003 (1/2971) 0 * * Os_TE_223535 Chr6 13837246 13837247 + ORSgTERT00200961 124 0.7307 (2184/2989) 0 * * Os_TE_223512 Chr6 13829152 13829153 + MuDR4_OS 7610 0.0525 (157/2989) 0 * * Os_TE_223457 Chr6 13807150 13807151 - HARB-1_OS 5166 0.0007 (2/2861) 0 * Os_TE_223456 Os_TE_223456 Chr6 13807148 13807147 + HARB-1_OS 5166 0.0007 (2/2872) 0 * Os_TE_223457 Os_TE_223455 Chr6 13807069 13807070 + MPING 430 0.0003 (1/2910) 0 * Os_TE_223454 Os_TE_223454 Chr6 13807067 13807066 - MPING 430 0.0003 (1/2894) 0 * Os_TE_223455 Os_TE_223393 Chr6 13790590 13790591 + COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * Os_TE_223392 Os_TE_223392 Chr6 13790586 13790585 - COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_223393 Os_TE_223383 Chr6 13787934 13787935 - SZ-22_LTR 4403 0.0078 (23/2953) 0 * Os_TE_223382 Os_TE_223382 Chr6 13787930 13787929 + ORSiTERTOOT00226 792 0.0078 (23/2950) 0 * Os_TE_223383 Os_TE_223373 Chr6 13782080 13782079 - TRUNCATOR2_LTR 2904 0.0025 (7/2784) 0 * * Os_TE_223346 Chr6 13764493 13764494 - SC-8_LTR 4951 0.0003 (1/2959) 0 * Os_TE_223345 Os_TE_223345 Chr6 13764489 13764488 + ORSiTERTOOT00381 4988 0.0007 (2/2974) 0 * Os_TE_223346 Os_TE_223343 Chr6 13762083 13762082 - ORSgTEMT01600152 226 0.0007 (2/2942) 0 * * Os_TE_223341 Chr6 13761841 13761840 - SC-3_LTR 5748 0.0010 (3/2963) 0 * * Os_TE_223337 Chr6 13761234 13761235 - ORSgTEMT01601493 303 0.0003 (1/2944) 0 * * Os_TE_223334 Chr6 13755451 13755452 + INDITTO 263 0.0027 (8/2993) 0 * Os_TE_223333 Os_TE_223333 Chr6 13755449 13755448 - INDITTO 263 0.0027 (8/2990) 0 * Os_TE_223334 Os_TE_223265 Chr6 13731687 13731686 - GYPSY-A_LTR 8951 0.0003 (1/2922) 0 * * Os_TE_223255 Chr6 13729384 13729383 - SC-3_LTR 5748 0.0003 (1/2995) 0 * * Os_TE_223254 Chr6 13728229 13728230 + RETROSAT2LTRA 3112 0.0027 (8/2990) 0 * Os_TE_223253 Os_TE_223253 Chr6 13728225 13728224 - RETROSAT3_LTR 11537 0.0033 (10/2994) 0 * Os_TE_223254 Os_TE_223224 Chr6 13712810 13707056 + SC-3_LTR 5748 0.3133 (936/2988) 1 Intact Os_TE_223218 Os_TE_223218 Chr6 13707056 13712810 - SC-3_LTR 5748 0.3115 (931/2989) 1 Intact Os_TE_223224 Os_TE_223215 Chr6 13704794 13704795 + TWIFBIG 3567 0.0032 (6/1889) -1 * * Os_TE_223199 Chr6 13702650 13702649 + ORSiTERTOOT00226 792 0.6516 (1938/2974) 0 * * Os_TE_223179 Chr6 13691497 13691498 - SC-8_LTR 4951 0.0027 (8/2918) 0 * Os_TE_223178 Os_TE_223178 Chr6 13691493 13691492 + SC-8_LTR 4951 0.0027 (8/2915) 0 * Os_TE_223179 Os_TE_223153 Chr6 13684617 13684616 + ORSgTETNOOT00818 268 0.0013 (4/2993) 0 * * Os_TE_223137 Chr6 13677608 13677609 - MDR2 6967 0.0498 (149/2992) 0 * Os_TE_223136 Os_TE_223136 Chr6 13677599 13677598 - MDR2 6967 0.0501 (150/2997) 0 * Os_TE_223137 Os_TE_223094 Chr6 13665319 13665320 + TRUNCATOR2_LTR 2904 0.6267 (1860/2968) 0 * Os_TE_223093 Os_TE_223093 Chr6 13665315 13665314 - TRUNCATOR2_LTR 2904 0.6333 (1891/2986) 0 * Os_TE_223094 Os_TE_223092 Chr6 13665178 13665179 + RIRE3_LTR 12054 0.0268 (79/2944) 0 * Os_TE_223091 Os_TE_223091 Chr6 13665174 13665173 - RIRE3_LTR 12054 0.0277 (82/2958) 0 * Os_TE_223092 Os_TE_223080 Chr6 13659231 13659232 + TRUNCATOR 2918 0.0003 (1/2980) 0 * * Os_TE_223077 Chr6 13657480 13657481 + RIRE3A_LTR 10580 0.1023 (305/2981) 0 * Os_TE_223076 Os_TE_223076 Chr6 13657476 13657475 - RIRE3A_LTR 10580 0.1030 (307/2982) 0 * Os_TE_223077 Os_TE_223073 Chr6 13655881 13655880 + ORSgTEMT00700017 386 0.0003 (1/2990) 0 * * Os_TE_223064 Chr6 13652958 13652959 + TRUNCATOR 2918 0.0265 (79/2978) 0 * Os_TE_223063 Os_TE_223063 Chr6 13652952 13652951 - ORSiTERT00200154 9386 0.0252 (75/2974) 0 * Os_TE_223064 Os_TE_223060 Chr6 13649022 13649023 - COPIA2-LTR_OS 6433 0.0298 (89/2989) 0 * Os_TE_223059 Os_TE_223059 Chr6 13649018 13649017 + COPIA2-LTR_OS 6433 0.0294 (88/2993) 0 * Os_TE_223060 Os_TE_223000 Chr6 13616694 13616693 + CACTA-B 1103 0.6325 (1788/2827) 0 * * Os_TE_222981 Chr6 13606597 13607339 - CLOUD 734 0.2907 (818/2814) -1 Intact * Os_TE_222970 Chr6 13601549 13601550 - COPIA2-LTR_OS 6433 0.0003 (1/2968) 0 * Os_TE_222969 Os_TE_222969 Chr6 13601545 13601544 + COPIA2-LTR_OS 6433 0.0003 (1/2965) 0 * Os_TE_222970 Os_TE_222872 Chr6 13557383 13557382 - CRM-LTR_OS 7749 0.0003 (1/2971) 0 * * Os_TE_222858 Chr6 13552363 13552362 + MPING 430 0.0010 (3/2980) 0 * * Os_TE_222785 Chr6 13517332 13517333 + SC-8_LTR 4951 0.0010 (3/2985) 0 * Os_TE_222784 Os_TE_222784 Chr6 13517328 13517327 - SC-8_LTR 4951 0.0010 (3/2986) 0 * Os_TE_222785 Os_TE_222778 Chr6 13512505 13512504 + ORSiTERTOOT00226 792 0.0004 (1/2746) 0 * * Os_TE_222744 Chr6 13504716 13504717 - RIREX_LTR 8828 0.0003 (1/2948) 0 * Os_TE_222743 Os_TE_222743 Chr6 13504712 13504711 + RIREX_LTR 8828 0.0007 (2/2950) 0 * Os_TE_222744 Os_TE_222734 Chr6 13503992 13503993 - COPIA2-LTR_OS 6433 0.0003 (1/2858) 0 * Os_TE_222733 Os_TE_222733 Chr6 13503988 13503987 + COPIA2-LTR_OS 6433 0.0003 (1/2873) 0 * Os_TE_222734 Os_TE_222646 Chr6 13469059 13469058 + ORSiTERTOOT00034 791 0.0003 (1/2989) 0 * * Os_TE_222643 Chr6 13466175 13466176 - ORSgTETN00200001 10994 0.0037 (11/2993) 0 * Os_TE_222642 Os_TE_222642 Chr6 13466173 13466172 + SPMLIKE 10989 0.0033 (10/2992) 0 * Os_TE_222643 Os_TE_222639 Chr6 13465764 13465763 - COPI2_LTR 4733 0.0013 (4/2984) 0 * * Os_TE_222556 Chr6 13445258 13445259 + COPI2_LTR 4733 0.0007 (2/2996) 0 * Os_TE_222555 Os_TE_222555 Chr6 13445254 13445253 - COPI2_LTR 4733 0.0007 (2/2996) 0 * Os_TE_222556 Os_TE_222554 Chr6 13444676 13444675 - SPMLIKE 10989 0.0007 (2/2998) 0 * * Os_TE_222552 Chr6 13442583 13442584 + RIREX_LTR 8828 0.0007 (2/2968) 0 * * Os_TE_222477 Chr6 13402630 13402631 + ORSiTERTOOT00296 5553 0.0007 (2/2990) 0 * Os_TE_222476 Os_TE_222476 Chr6 13402626 13402625 - SC-3_LTR 5748 0.0007 (2/2987) 0 * Os_TE_222477 Os_TE_222475 Chr6 13401085 13401084 + SPMLIKE 10989 0.0010 (1/994) 0 * * Os_TE_222464 Chr6 13398174 13398175 - COPI2_LTR 4733 0.0003 (1/2973) 0 * * Os_TE_222462 Chr6 13397639 13397640 - RIRE2_LTR 11306 0.6215 (1716/2761) 0 * Os_TE_222461 Os_TE_222461 Chr6 13397635 13397634 + RIRE2_LTR 11306 0.6416 (1858/2896) 0 * Os_TE_222462 Os_TE_222459 Chr6 13395426 13395425 - RIRE2_LTR 11306 0.0003 (1/2971) 0 * * Os_TE_222458 Chr6 13395220 13395221 + ORSiTERT00100071 4657 0.0010 (3/2974) 0 * Os_TE_222457 Os_TE_222457 Chr6 13395217 13395216 - SZ-25LTR 330 0.0017 (5/2970) 0 * Os_TE_222458 Os_TE_222455 Chr6 13394425 13394426 - COPI2_LTR 4733 0.0003 (1/2990) 0 * Os_TE_222454 Os_TE_222454 Chr6 13394421 13394420 + COPI2_LTR 4733 0.0003 (1/2990) 0 * Os_TE_222455 Os_TE_222448 Chr6 13391931 13391932 + ORSiTERTOOT00226 792 0.0003 (1/2988) 0 * Os_TE_222447 Os_TE_222447 Chr6 13391927 13391926 - SZ-22_LTR 4403 0.0003 (1/2983) 0 * Os_TE_222448 Os_TE_222446 Chr6 13390544 13390545 - EnSpm-16_OS 13336 0.0017 (5/2986) 0 * Os_TE_222445 Os_TE_222445 Chr6 13390542 13390541 + EnSpm-16_OS 13336 0.0017 (5/2988) 0 * Os_TE_222446 Os_TE_222347 Chr6 13352136 13352137 + RIRE3_LTR 12054 0.0017 (5/2935) 0 * * Os_TE_222337 Chr6 13346501 13346502 - COPI2_LTR 4733 0.0027 (8/2992) 0 * Os_TE_222336 Os_TE_222336 Chr6 13346497 13346496 + COPI2_LTR 4733 0.0027 (8/2993) 0 * Os_TE_222337 Os_TE_222333 Chr6 13344773 13344774 - TEMPINDAS 4259 0.0298 (79/2647) 0 * * Os_TE_222302 Chr6 13332706 13332707 - SC-8_LTR 4951 0.0007 (2/2994) 0 * Os_TE_222301 Os_TE_222301 Chr6 13332702 13332701 + SC-8_LTR 4951 0.0007 (2/2993) 0 * Os_TE_222302 Os_TE_222261 Chr6 13318897 13318898 - SZ-22_LTR 4403 0.0003 (1/2974) 0 * * Os_TE_222259 Chr6 13318319 13318320 - ORSiTETNOOT00216 3569 0.0066 (18/2732) 0 * Os_TE_222258 Os_TE_222258 Chr6 13318312 13318311 + TWIFBIG 3567 0.0073 (21/2864) 0 * Os_TE_222259 Os_TE_222252 Chr6 13316157 13316156 - ORSgTEMT01602467 227 0.0017 (5/2998) 0 * Os_TE_222251 Os_TE_222251 Chr6 13316154 13316155 + ORSgTEMT01602051 240 0.0017 (5/2981) 0 * Os_TE_222252 Os_TE_222178 Chr6 13288736 13288737 + ORSiTERTOOT00226 792 0.0003 (1/2976) 0 * * Os_TE_222177 Chr6 13287224 13287225 - MuDR4_OS 7610 0.0003 (1/2972) 0 * * Os_TE_222085 Chr6 13252022 13252023 + COPIA2-LTR_OS 6433 0.7028 (2076/2954) 0 * Os_TE_222084 Os_TE_222084 Chr6 13252019 13252018 - COPIA2-LTR_OS 6433 0.7094 (2121/2990) 0 * Os_TE_222085 Os_TE_222075 Chr6 13246360 13246359 - TRUNCATOR2_LTR 2904 0.0003 (1/2940) 0 * * Os_TE_222025 Chr6 13206025 13214386 + MuDR3_OS 8604 0.1842 (492/2671) 1 Intact * Os_TE_222023 Chr6 13203825 13203824 - ORSiTERTOOT00074 4935 0.7077 (2119/2994) 0 * * Os_TE_221988 Chr6 13184891 13184892 + ORSiTERTOOT00296 5553 0.0003 (1/2960) 0 * Os_TE_221987 Os_TE_221987 Chr6 13184887 13184886 - SC-3_LTR 5748 0.0003 (1/2960) 0 * Os_TE_221988 Os_TE_221963 Chr6 13174578 13174579 + NDNA1TNA_OS 334 0.0268 (80/2989) 0 * Os_TE_221962 Os_TE_221962 Chr6 13174576 13174575 - NDNA1TNA_OS 334 0.0271 (81/2987) 0 * Os_TE_221963 Os_TE_221950 Chr6 13168524 13168525 + ORSiTERTOOT00296 5553 0.0003 (1/2993) 0 * Os_TE_221949 Os_TE_221949 Chr6 13168520 13168519 - SC-3_LTR 5748 0.0003 (1/2994) 0 * Os_TE_221950 Os_TE_221947 Chr6 13164792 13164793 - SC-3_LTR 5748 0.0003 (1/2997) 0 * Os_TE_221946 Os_TE_221946 Chr6 13164788 13164787 + ORSiTERTOOT00296 5553 0.0003 (1/2997) 0 * Os_TE_221947 Os_TE_221906 Chr6 13143429 13143430 - SZ-25LTR 330 0.0010 (3/2982) 0 * Os_TE_221905 Os_TE_221905 Chr6 13143425 13143424 + COPI1_LTR 4721 0.0017 (5/2981) 0 * Os_TE_221906 Os_TE_221849 Chr6 13125799 13125800 + rn_179-105_LTR 4837 0.0291 (87/2985) 0 * Os_TE_221848 Os_TE_221848 Chr6 13125795 13125794 - rn_179-105_LTR 4837 0.0294 (88/2989) 0 * Os_TE_221849 Os_TE_221823 Chr6 13116589 13116590 + RETROSAT3_LTR 11537 0.1055 (305/2891) 0 * Os_TE_221822 Os_TE_221822 Chr6 13116585 13116584 - RETROSAT3_LTR 11537 0.1058 (305/2882) 0 * Os_TE_221823 Os_TE_221821 Chr6 13116382 13116383 - COPI2_LTR 4733 0.0003 (1/2967) 0 * Os_TE_221820 Os_TE_221820 Chr6 13116378 13116377 + COPI2_LTR 4733 0.0003 (1/2968) 0 * Os_TE_221821 Os_TE_221779 Chr6 13098982 13098983 + TRUNCATOR 2918 0.0165 (49/2961) 0 * * Os_TE_221749 Chr6 13078471 13078472 + ORSiTERTOOT00273 5419 0.6386 (1838/2878) 0 * * Os_TE_221726 Chr6 13062421 13062422 - RIREX_LTR 8828 0.0003 (1/2995) 0 * * Os_TE_221681 Chr6 13054640 13054641 - RIREX_LTR 8828 0.0209 (62/2973) 0 * * Os_TE_221665 Chr6 13046986 13046985 - SC-3_LTR 5748 0.7012 (2079/2965) 0 * * Os_TE_221660 Chr6 13045371 13045372 - CRM-LTR_OS 7749 0.0012 (3/2495) 0 * Os_TE_221659 Os_TE_221659 Chr6 13045367 13045366 + CRM-LTR_OS 7749 0.0013 (3/2393) 0 * Os_TE_221660 Os_TE_221626 Chr6 13032887 13032886 - ORSgTEMT04600010 284 0.0017 (5/2975) 0 * * Os_TE_221623 Chr6 13031077 13029294 + ENSPM4_OS 11610 0.2836 (818/2884) 1 Intact Os_TE_221621 Os_TE_221621 Chr6 13029293 13031077 - ENSPM4_OS 11610 0.3017 (883/2927) 1 Intact Os_TE_221623 Os_TE_221617 Chr6 13027096 13027097 - CACTA-P 1150 0.0212 (63/2978) 0 * * Os_TE_221616 Chr6 13026801 13025390 + CACTA-B 1103 0.2559 (745/2911) 1 Intact Os_TE_221615 Os_TE_221615 Chr6 13025390 13026799 - ORSgTETN00200001 10994 0.2613 (748/2863) 1 Intact Os_TE_221616 Os_TE_221603 Chr6 13019758 13019759 + COPIA1-LTR_OS 9292 0.0179 (53/2962) 0 * * Os_TE_221570 Chr6 13007278 13007279 - AMYLTP 383 0.0027 (8/2915) 0 * Os_TE_221569 Os_TE_221569 Chr6 13007270 13007269 + AMYLTP 383 0.0027 (8/2931) 0 * Os_TE_221570 Os_TE_221563 Chr6 13006063 13006064 + ORSgTEMT01602181 239 0.7114 (1528/2148) 0 * * Os_TE_221553 Chr6 13002792 13002791 - ORSgTEMT01600639 228 0.0207 (62/2993) 0 * * Os_TE_221552 Chr6 13002771 13002772 + NDNA1TNA_OS 334 0.0074 (22/2983) 0 * Os_TE_221551 Os_TE_221551 Chr6 13002769 13002768 - NDNA1TNA_OS 334 0.0072 (21/2931) 0 * Os_TE_221552 Os_TE_221549 Chr6 13002131 13002132 + RIRE2_LTR 11306 0.0003 (1/2988) 0 * Os_TE_221548 Os_TE_221548 Chr6 13002127 13002126 - RIRE2_LTR 11306 0.0003 (1/2987) 0 * Os_TE_221549 Os_TE_221546 Chr6 13001775 13001774 + ORSiTERTOOT00027 10853 0.0003 (1/2990) 0 * * Os_TE_221545 Chr6 13001665 13001666 - RIREX_LTR 8828 0.0034 (10/2919) 0 * Os_TE_221544 Os_TE_221544 Chr6 13001661 13001660 + RIREX_LTR 8828 0.0031 (9/2940) 0 * Os_TE_221545 Os_TE_221543 Chr6 13000269 13000268 + STOWAWAY51_OS 246 0.0003 (1/2919) 0 * Os_TE_221542 Os_TE_221542 Chr6 13000263 13000264 - STOWAWAY51_OS 246 0.0003 (1/2925) 0 * Os_TE_221543 Os_TE_221541 Chr6 12999947 12999948 - AMYLTP 383 0.6167 (1805/2927) 0 * Os_TE_221540 Os_TE_221540 Chr6 12999941 12999940 + AMYLTP 383 0.6017 (1724/2865) 0 * Os_TE_221541 Os_TE_221533 Chr6 12991462 12991463 - RIRE3_LTR 12054 0.0027 (8/2933) 0 * Os_TE_221532 Os_TE_221532 Chr6 12991458 12991457 + RIRE3_LTR 12054 0.0027 (8/2936) 0 * Os_TE_221533 Os_TE_221531 Chr6 12991234 12991235 - TRUNCATOR2_LTR 2904 0.0072 (21/2936) 0 * Os_TE_221530 Os_TE_221530 Chr6 12991230 12991229 + TRUNCATOR2_LTR 2904 0.0068 (20/2931) 0 * Os_TE_221531 Os_TE_221528 Chr6 12990121 12990120 + SZ-22_LTR 4403 0.0007 (2/2938) 0 * * Os_TE_221517 Chr6 12984831 12984832 - MuDR4_OS 7610 0.0071 (21/2965) 0 * Os_TE_221516 Os_TE_221516 Chr6 12984824 12984823 - MuDR4_OS 7610 0.0065 (19/2914) 0 * Os_TE_221517 Os_TE_221515 Chr6 12984090 12984091 - AMYLTP 383 0.0007 (2/2997) 0 * * Os_TE_221512 Chr6 12983023 12983022 - RPO_OS 1983 0.0218 (65/2986) 0 * Os_TE_221511 Os_TE_221511 Chr6 12983022 12983023 + RPO_OS 1983 0.0181 (54/2987) 0 * Os_TE_221512 Os_TE_221504 Chr6 12982393 12982392 - SUSU 279 0.0195 (58/2971) 0 * Os_TE_221503 Os_TE_221503 Chr6 12982388 12982389 + ORSgTEMT05000092 279 0.0216 (64/2963) 0 * Os_TE_221504 Os_TE_221501 Chr6 12981045 12981046 + RIREX_LTR 8828 0.0203 (57/2807) 0 * Os_TE_221500 Os_TE_221500 Chr6 12981041 12981040 - RIREX_LTR 8828 0.0231 (66/2857) 0 * Os_TE_221501 Os_TE_221498 Chr6 12981019 12981018 + SEVERIN-2 1952 0.0609 (170/2792) 0 * * Os_TE_221459 Chr6 12973816 12973815 - COPI2_LTR 4733 0.0004 (1/2792) 0 * * Os_TE_221457 Chr6 12973695 12973694 - Cassandra_OS-LTR 764 0.0034 (9/2648) 0 * * Os_TE_221411 Chr6 12949887 12949886 - SZ-5LTR 1223 0.0077 (8/1033) 0 * * Os_TE_221370 Chr6 12935697 12935696 + SPMLIKE 10989 0.0017 (5/2978) 0 * * Os_TE_221365 Chr6 12933271 12933272 + OSTONOR1_LTR 6440 0.0003 (1/2997) 0 * Os_TE_221364 Os_TE_221364 Chr6 12933267 12933266 - ORSiTERT00100062 5674 0.0003 (1/2997) 0 * Os_TE_221365 Os_TE_221359 Chr6 12928028 12928029 - CACTA-G1 797 0.0020 (6/2990) 0 * Os_TE_221358 Os_TE_221358 Chr6 12928026 12928025 + CACTA-G1 797 0.0017 (5/2986) 0 * Os_TE_221359 Os_TE_221355 Chr6 12924876 12924875 + SINE03_OS 360 0.0003 (1/2892) 0 * * Os_TE_221349 Chr6 12923302 12923303 - TYPEG 427 0.0014 (4/2800) 0 * Os_TE_221348 Os_TE_221348 Chr6 12923294 12923293 - ORSgTEMT01800068 357 0.0014 (4/2800) 0 * Os_TE_221349 Os_TE_221326 Chr6 12918605 12918606 - DS-RICE2N 613 0.0065 (19/2924) 0 * Os_TE_221325 Os_TE_221325 Chr6 12918598 12918597 + DS-RICE4N 715 0.0065 (19/2920) 0 * Os_TE_221326 Os_TE_221307 Chr6 12917030 12917031 + TRUNCATOR 2918 0.0475 (142/2990) 0 * * Os_TE_221294 Chr6 12911903 12911904 - ORSgTERT00201216 11284 0.0067 (20/2970) 0 * * Os_TE_221238 Chr6 12893498 12893497 + TRUNCATOR 2918 0.0007 (2/2881) 0 * * Os_TE_221194 Chr6 12871163 12871164 + RIREX_LTR 8828 0.0014 (4/2924) 0 * Os_TE_221193 Os_TE_221193 Chr6 12871159 12871158 - RIREX_LTR 8828 0.0014 (4/2916) 0 * Os_TE_221194 Os_TE_221145 Chr6 12848631 12848630 - ORSgTEMT00900760 239 0.0054 (16/2987) 0 * * Os_TE_221120 Chr6 12846015 12846016 - RETRO2_LTR 12874 0.6105 (1776/2909) 0 * Os_TE_221119 Os_TE_221119 Chr6 12846011 12846010 + RETRO2A_LTR 12895 0.6117 (1783/2915) 0 * Os_TE_221120 Os_TE_221116 Chr6 12845224 12845225 + RIRE2_LTR 11306 0.0003 (1/2938) 0 * Os_TE_221115 Os_TE_221115 Chr6 12845220 12845219 - RIRE2_LTR 11306 0.0003 (1/2945) 0 * Os_TE_221116 Os_TE_221108 Chr6 12844400 12844401 + TRUNCATOR 2918 0.0356 (105/2946) 0 * * Os_TE_221081 Chr6 12834958 12834959 + ORSgTEMT00600376 329 0.0384 (113/2943) 0 * Os_TE_221080 Os_TE_221080 Chr6 12834953 12834952 + ORSgTEMT00600272 361 0.0380 (112/2946) 0 * Os_TE_221081 Os_TE_221063 Chr6 12832457 12832458 - MPING 430 0.0060 (17/2857) 0 * * Os_TE_221033 Chr6 12827761 12827762 + COPIA2-LTR_OS 6433 0.0003 (1/2980) 0 * Os_TE_221032 Os_TE_221032 Chr6 12827757 12827756 - COPIA2-LTR_OS 6433 0.0003 (1/2981) 0 * Os_TE_221033 Os_TE_221026 Chr6 12825345 12825346 + MPING 430 0.0003 (1/2885) 0 * Os_TE_221025 Os_TE_221025 Chr6 12825343 12825342 - MPING 430 0.0004 (1/2800) 0 * Os_TE_221026 Os_TE_221000 Chr6 12822583 12822584 - CRM-LTR_OS 7749 0.0003 (1/2946) 0 * * Os_TE_220996 Chr6 12822153 12822154 + MPING 430 0.0033 (9/2724) 0 * Os_TE_220995 Os_TE_220995 Chr6 12822151 12822150 - MPING 430 0.0028 (8/2905) 0 * Os_TE_220996 Os_TE_220979 Chr6 12812666 12812667 + DITTO3 260 0.0007 (2/2904) 0 * * Os_TE_220943 Chr6 12799416 12799415 + YOUREN 286 0.0003 (1/2989) 0 * * Os_TE_220918 Chr6 12782872 12782873 + JOUZHENA 607 0.0300 (89/2965) 0 * Os_TE_220917 Os_TE_220917 Chr6 12782865 12782864 - JOUZHENA 607 0.0217 (64/2946) 0 * Os_TE_220918 Os_TE_220898 Chr6 12778520 12778521 - SZ-9LTR 965 0.0020 (6/2975) 0 * Os_TE_220897 Os_TE_220897 Chr6 12778516 12778515 + SZ-9LTR 965 0.0017 (5/2971) 0 * Os_TE_220898 Os_TE_220880 Chr6 12771842 12771843 - SZ-22_LTR 4403 0.0017 (5/2995) 0 * * Os_TE_220855 Chr6 12765605 12765606 + RIRE3_LTR 12054 0.6353 (1883/2964) 0 * * Os_TE_220852 Chr6 12764464 12764465 + MPING 430 0.0003 (1/2937) 0 * Os_TE_220851 Os_TE_220851 Chr6 12764462 12764461 - MPING 430 0.0003 (1/2938) 0 * Os_TE_220852 Os_TE_220849 Chr6 12762343 12762344 - SC-3_LTR 5748 0.0003 (1/2992) 0 * Os_TE_220848 Os_TE_220848 Chr6 12762339 12762338 + ORSiTERTOOT00296 5553 0.0003 (1/2990) 0 * Os_TE_220849 Os_TE_220822 Chr6 12754077 12754078 + ORSgTEMT02400041 225 0.0201 (58/2885) 0 * * Os_TE_220820 Chr6 12753734 12753735 - COPIA2-LTR_OS 6433 0.0003 (1/2964) 0 * Os_TE_220819 Os_TE_220819 Chr6 12753730 12753729 + COPIA2-LTR_OS 6433 0.0003 (1/2970) 0 * Os_TE_220820 Os_TE_220802 Chr6 12741807 12741808 + MDR2 6967 0.0386 (113/2925) 0 * * Os_TE_220788 Chr6 12735018 12735017 - TRUNCATOR2_LTR 2904 0.0420 (117/2783) 0 * * Os_TE_220747 Chr6 12715474 12715475 - ORSgTEMT04800063 360 0.0207 (59/2854) 0 * Os_TE_220746 Os_TE_220746 Chr6 12715472 12715471 + ORSgTEMT04800088 373 0.0196 (56/2850) 0 * Os_TE_220747 Os_TE_220739 Chr6 12713613 12713614 + INDITTO 263 0.0013 (4/2983) 0 * Os_TE_220738 Os_TE_220738 Chr6 12713611 12713610 - INDITTO 263 0.0017 (5/2935) 0 * Os_TE_220739 Os_TE_220737 Chr6 12713273 12713274 - SZ-52_LTR 13107 0.0003 (1/2984) 0 * * Os_TE_220731 Chr6 12707378 12707377 + RIREX_LTR 8828 0.0003 (1/2985) 0 * * Os_TE_220715 Chr6 12702336 12702335 + ORSiCMCM00100013 9728 0.0003 (1/2929) 0 * * Os_TE_220707 Chr6 12700605 12700606 + TRUNCATOR 2918 0.6218 (1851/2977) 0 * * Os_TE_220706 Chr6 12700052 12700053 - ORSiTERT00200154 9386 0.0365 (108/2961) 0 * Os_TE_220705 Os_TE_220705 Chr6 12700046 12700045 + TRUNCATOR 2918 0.0391 (116/2968) 0 * Os_TE_220706 Os_TE_220679 Chr6 12693372 12693373 + MPING 430 0.0003 (1/2993) 0 * Os_TE_220678 Os_TE_220678 Chr6 12693370 12693369 - MPING 430 0.0003 (1/2990) 0 * Os_TE_220679 Os_TE_220668 Chr6 12689821 12689820 - TNR12 528 0.0037 (11/2990) 0 * * Os_TE_220655 Chr6 12687310 12687309 + ORSiTERTOOT00366 5449 0.0017 (5/2994) 0 * * Os_TE_220638 Chr6 12681939 12681940 - ORSgTEMT01602170 250 0.0003 (1/2988) 0 * * Os_TE_220632 Chr6 12677428 12677429 - RETROSAT2LTR 12796 0.0034 (10/2952) 0 * * Os_TE_220623 Chr6 12673997 12673998 - TRUNCATOR2_LTR 2904 0.0017 (5/2984) 0 * * Os_TE_220574 Chr6 12652857 12651336 + MERMITEB 1610 0.2916 (867/2973) 1 Intact Os_TE_220571 Os_TE_220571 Chr6 12651335 12652857 + MERMITEB 1610 0.2931 (871/2972) 1 Intact Os_TE_220574 Os_TE_220569 Chr6 12650807 12650806 + COPIA2-LTR_OS 6433 0.0011 (1/911) 0 * * Os_TE_220568 Chr6 12650080 12650079 + RIREX_LTR 8828 0.0017 (5/2901) 0 * * Os_TE_220555 Chr6 12646462 12646463 + CACTA-H 1152 0.7130 (2102/2948) 0 * Os_TE_220554 Os_TE_220554 Chr6 12646460 12646459 - CACTA-H 1152 0.6960 (1960/2816) 0 * Os_TE_220555 Os_TE_220551 Chr6 12645392 12644738 + GYPSY1-LTR_OS 8900 0.2827 (837/2961) 1 Solo_LTR Os_TE_220550 Os_TE_220550 Chr6 12644738 12645392 - GYPSY1-LTR_OS 8900 0.2919 (873/2991) 1 Solo_LTR Os_TE_220551 Os_TE_220450 Chr6 12581277 12581278 - RIRE3_LTR 12054 0.0588 (51/867) 0 * * Os_TE_220391 Chr6 12552348 12552349 - RETROSAT3_LTR 11537 0.0018 (4/2270) 0 * * Os_TE_220385 Chr6 12541808 12541809 + ORSiCMCM00100019 2717 0.0337 (98/2912) 0 * * Os_TE_220382 Chr6 12541771 12541770 + RIRE3_LTR 12054 0.0136 (40/2952) 0 * * Os_TE_220379 Chr6 12541071 12541070 - ORSiTERTOOT00272 4975 0.7127 (2109/2959) 0 * * Os_TE_220377 Chr6 12540054 12540053 + F569 228 0.0070 (5/714) 0 * * Os_TE_220376 Chr6 12539851 12538697 - CACTA-H 1152 0.2935 (859/2927) 1 Intact Os_TE_220374 Os_TE_220374 Chr6 12538696 12539851 + CACTA-I 1124 0.2958 (877/2965) 1 Intact Os_TE_220376 Os_TE_220373 Chr6 12538090 12538091 - COPIA2-LTR_OS 6433 0.0007 (2/2990) 0 * * Os_TE_220352 Chr6 12505264 12505265 + RIREX_LTR 8828 0.0007 (2/2873) 0 * Os_TE_220351 Os_TE_220351 Chr6 12505260 12505259 - RIREX_LTR 8828 0.0007 (2/2884) 0 * Os_TE_220352 Os_TE_220338 Chr6 12495286 12495287 + MDM2 312 0.0021 (6/2915) 0 * * Os_TE_220331 Chr6 12491722 12491723 + TESS 244 0.0180 (53/2941) 0 * Os_TE_220330 Os_TE_220330 Chr6 12491715 12491714 - TESS 244 0.0181 (53/2933) 0 * Os_TE_220331 Os_TE_220327 Chr6 12489893 12478443 - RETROSAT3_LTR 11537 0.2733 (818/2993) 1 Intact Os_TE_220315 Os_TE_220315 Chr6 12478443 12481481 + RETROSAT2LTRA 3112 0.2902 (830/2860) 1 Intact Os_TE_220327 Os_TE_220313 Chr6 12477119 12477120 + TRUNCATOR 2918 0.0003 (1/2981) 0 * * Os_TE_220311 Chr6 12476693 12476692 - ORSgTEMT00300008 396 0.0021 (6/2909) 0 * * Os_TE_220300 Chr6 12471474 12462962 + MuDR3_OS 8604 0.2672 (776/2904) 1 Intact Os_TE_220294 Os_TE_220294 Chr6 12462962 12471470 - MuDR3_OS 8604 0.2520 (717/2845) 1 Intact Os_TE_220300 Os_TE_220292 Chr6 12462825 12462824 - MuDR3_OS 8604 0.0207 (54/2606) 0 * * Os_TE_220291 Chr6 12462745 12462744 - ORSgTEMT02400179 221 0.0004 (1/2700) 0 * * Os_TE_220281 Chr6 12456560 12456559 - SZ-66LTR 1223 0.0007 (2/2962) 0 * * Os_TE_220278 Chr6 12455259 12455258 - RETRO1_LTR 8314 0.0003 (1/2965) 0 * * Os_TE_220266 Chr6 12450078 12450077 + INDITTO 263 0.0021 (6/2869) 0 * * Os_TE_220245 Chr6 12444295 12444294 + MERMITEA 1710 0.7139 (2114/2961) 0 * * Os_TE_220232 Chr6 12431742 12431741 + ORSgTEMT00501505 149 0.0020 (6/2987) 0 * Os_TE_220231 Os_TE_220231 Chr6 12431740 12431741 - GAIJIN 147 0.0020 (6/2986) 0 * Os_TE_220232 Os_TE_220229 Chr6 12430687 12430688 + ORSgTEMT00502025 149 0.0003 (1/2927) 0 * * Os_TE_220218 Chr6 12425974 12420986 + HARB-1_OS 5166 0.0463 (138/2983) 1 Intact * Os_TE_220213 Chr6 12412274 12412275 - ORSiTERT00200154 9386 0.0447 (134/2995) 0 * Os_TE_220212 Os_TE_220212 Chr6 12412268 12412267 + TRUNCATOR 2918 0.0450 (135/2997) 0 * Os_TE_220213 Os_TE_220210 Chr6 12411487 12411486 + RIREX_LTR 8828 0.0389 (115/2960) 0 * * Os_TE_220201 Chr6 12403382 12403383 - COPIA1-LTR_OS 9292 0.0032 (1/309) -1 * * Os_TE_220200 Chr6 12403350 12403351 + TWIFB1 3737 0.0019 (5/2579) 0 * * Os_TE_220160 Chr6 12390232 12382529 - RIREX_LTR 8828 0.2709 (810/2990) 1 Intact Os_TE_220158 Os_TE_220158 Chr6 12382529 12390232 + RIREX_LTR 8828 0.2693 (804/2986) 1 Intact Os_TE_220160 Os_TE_220157 Chr6 12382059 12382060 - RIREX_LTR 8828 0.0013 (4/2970) 0 * Os_TE_220156 Os_TE_220156 Chr6 12382055 12382054 + RIREX_LTR 8828 0.0013 (4/2969) 0 * Os_TE_220157 Os_TE_220153 Chr6 12381885 12381886 + MDR2 6967 0.0378 (112/2963) 0 * * Os_TE_220127 Chr6 12361549 12361550 - ECR 394 0.0017 (5/2976) 0 * Os_TE_220126 Os_TE_220126 Chr6 12361541 12361540 - ECR 394 0.0013 (4/2973) 0 * Os_TE_220127 Os_TE_220124 Chr6 12361305 12361306 - MPING 430 0.0003 (1/2989) 0 * Os_TE_220123 Os_TE_220123 Chr6 12361303 12361302 + MPING 430 0.0003 (1/2989) 0 * Os_TE_220124 Os_TE_220114 Chr6 12352134 12352135 + RIREX_LTR 8828 0.0003 (1/2964) 0 * Os_TE_220113 Os_TE_220113 Chr6 12352130 12352129 - RIREX_LTR 8828 0.0003 (1/2961) 0 * Os_TE_220114 Os_TE_220111 Chr6 12350828 12350829 - SZ-62LTR 3649 0.0384 (115/2997) 0 * Os_TE_220110 Os_TE_220110 Chr6 12350824 12350823 + SZ-62LTR 3649 0.0367 (110/2994) 0 * Os_TE_220111 Os_TE_220109 Chr6 12345833 12345834 - TNR2A 152 0.0025 (6/2436) 0 * * Os_TE_220104 Chr6 12345290 12345291 + RPO_OS 1983 0.5572 (1558/2796) 0 * * Os_TE_220094 Chr6 12343427 12343428 + BUHUI 375 0.0010 (3/2955) 0 * Os_TE_220093 Os_TE_220093 Chr6 12343425 12343424 - BUHUI 375 0.0017 (5/2954) 0 * Os_TE_220094 Os_TE_220084 Chr6 12339928 12339927 + DS-RICE4N 715 0.0100 (29/2886) 0 * * Os_TE_220075 Chr6 12333753 12333754 + RIREX_LTR 8828 0.0003 (1/2991) 0 * * Os_TE_220072 Chr6 12333723 12333722 - COPI2_LTR 4733 0.0003 (1/2994) 0 * * Os_TE_220068 Chr6 12332048 12332049 - RIRE2_LTR 11306 0.0020 (6/2991) 0 * Os_TE_220067 Os_TE_220067 Chr6 12332044 12332043 + RIRE2_LTR 11306 0.0020 (6/2996) 0 * Os_TE_220068 Os_TE_220046 Chr6 12317601 12317602 + ORSgTEMT00500512 153 0.0524 (156/2977) 0 * * Os_TE_220027 Chr6 12301697 12312286 + ENSPM3_OS 10837 0.3392 (924/2724) 1 Intact * Os_TE_220026 Chr6 12301572 12301573 + RIRE2_LTR 11306 0.0258 (73/2833) 0 * Os_TE_220025 Os_TE_220025 Chr6 12301568 12301567 - RIRE2_LTR 11306 0.0250 (72/2877) 0 * Os_TE_220026 Os_TE_220002 Chr6 12291061 12291062 - SZ-9LTR 965 0.7014 (2098/2991) 0 * Os_TE_220001 Os_TE_220001 Chr6 12291057 12291056 + SZ-9LTR 965 0.7016 (2093/2983) 0 * Os_TE_220002 Os_TE_219935 Chr6 12265633 12265634 - ORSgTETN00200001 10994 0.0003 (1/2991) 0 * Os_TE_219934 Os_TE_219934 Chr6 12265631 12265630 + SPMLIKE 10989 0.0003 (1/2993) 0 * Os_TE_219935 Os_TE_219911 Chr6 12260740 12260741 - AMYLTP 383 0.0013 (4/2967) 0 * Os_TE_219910 Os_TE_219910 Chr6 12260732 12260731 + AMYLTP 383 0.0010 (3/2963) 0 * Os_TE_219911 Os_TE_219908 Chr6 12260615 12260616 - INDITTO 263 0.0111 (33/2966) 0 * * Os_TE_219892 Chr6 12256776 12256775 - ORSgTEMT02400179 221 0.0251 (75/2992) 0 * Os_TE_219891 Os_TE_219891 Chr6 12256773 12256774 + ORSgTEMT02400041 225 0.0257 (77/2995) 0 * Os_TE_219892 Os_TE_219854 Chr6 12233259 12233260 + COPIA2-LTR_OS 6433 0.0003 (1/2982) 0 * Os_TE_219853 Os_TE_219853 Chr6 12233255 12233254 - COPIA2-LTR_OS 6433 0.0003 (1/2984) 0 * Os_TE_219854 Os_TE_219837 Chr6 12228041 12228042 - TRUNCATOR 2918 0.3436 (773/2250) 0 * * Os_TE_219833 Chr6 12227281 12215964 + SPMLIKE 10989 0.2551 (754/2956) 1 Intact Os_TE_219821 Os_TE_219821 Chr6 12215964 12227281 - ORSgTETN00200001 10994 0.2510 (739/2944) 1 Intact Os_TE_219833 Os_TE_219791 Chr6 12201567 12201568 + RIREX_LTR 8828 0.0024 (7/2882) 0 * Os_TE_219790 Os_TE_219790 Chr6 12201563 12201562 - RIREX_LTR 8828 0.0024 (7/2899) 0 * Os_TE_219791 Os_TE_219765 Chr6 12194996 12194995 + TNR2A 152 0.0112 (33/2957) 0 * Os_TE_219764 Os_TE_219764 Chr6 12194938 12194939 - TNR2A 152 0.0107 (32/2977) 0 * Os_TE_219765 Os_TE_219747 Chr6 12192390 12192389 + ORSgTETNOOT01834 251 0.0007 (2/2988) 0 * * Os_TE_219746 Chr6 12191332 12191333 + MuDR3_OS 8604 0.1208 (360/2981) 0 * Os_TE_219745 Os_TE_219745 Chr6 12191324 12191323 - MuDR3_OS 8604 0.1111 (326/2934) 0 * Os_TE_219746 Os_TE_219743 Chr6 12186204 12185880 - MUDRN4_OS 332 0.2578 (764/2964) 1 Intact * Os_TE_219740 Chr6 12185734 12183650 + MERMITEA 1710 0.2642 (781/2956) 1 Intact Os_TE_219738 Os_TE_219738 Chr6 12183650 12185730 + MERMITEH 1307 0.2711 (807/2977) 1 Intact Os_TE_219740 Os_TE_219726 Chr6 12180275 12180276 + STOWAWAY9_OS 235 0.0010 (3/2932) 0 * * Os_TE_219724 Chr6 12179670 12180154 - OSTE30 529 0.2677 (795/2970) 1 Intact * Os_TE_219723 Chr6 12179468 12147782 - ENSPM3_OS 10837 0.2731 (814/2981) 1 Intact * Os_TE_219709 Chr6 12147782 12179468 + ENSPM3_OS 10837 0.3723 (806/2165) 1 Intact * Os_TE_219708 Chr6 12147762 12147761 - STOWAWAY51_OS 246 0.5226 (867/1659) 0 * * Os_TE_219707 Chr6 12147756 12147757 + STOWAWAY51_OS 246 0.7408 (2192/2959) 0 * * Os_TE_219704 Chr6 12147554 12147555 + COPIA2-LTR_OS 6433 0.0003 (1/2968) 0 * * Os_TE_219691 Chr6 12140745 12140591 - TNR2 157 0.2730 (813/2978) 1 Intact * Os_TE_219686 Chr6 12135854 12135855 + SPMLIKE 10989 0.7297 (2127/2915) 0 * Os_TE_219685 Os_TE_219685 Chr6 12135852 12135851 - ORSgTETN00200001 10994 0.7240 (2057/2841) 0 * Os_TE_219686 Os_TE_219658 Chr6 12122347 12133489 + SPMLIKE 10989 0.2759 (806/2921) 1 Intact * Os_TE_219653 Chr6 12118165 12118012 + ORSgTEMT01701663 106 0.2737 (809/2956) 1 Intact Os_TE_219651 Os_TE_219651 Chr6 12118014 12118163 - STOWAWAY1_OS 149 0.2742 (809/2950) 1 Intact Os_TE_219653 Os_TE_219640 Chr6 12113404 12113405 - RIRE2_LTR 11306 0.0027 (8/2952) 0 * * Os_TE_219597 Chr6 12104107 12104108 + ORSgTEMT01602181 239 0.0023 (6/2589) 0 * * Os_TE_219569 Chr6 12096278 12096279 - COPIA2-LTR_OS 6433 0.0003 (1/2910) 0 * * Os_TE_219566 Chr6 12096170 12096169 + MPING 430 0.0003 (1/2917) 0 * * Os_TE_219555 Chr6 12093816 12093817 + RETRO2_LTR 12874 0.0013 (2/1517) -1 * Os_TE_219554 Os_TE_219554 Chr6 12093812 12093811 - RETRO2_LTR 12874 0.0039 (6/1534) -1 * Os_TE_219555 Os_TE_219551 Chr6 12093035 12093036 - ORSgTEMT01702320 154 0.5907 (1621/2744) 0 * * Os_TE_219547 Chr6 12091611 12091610 - STOWAWAY51_OS 246 0.0003 (1/2894) 0 * Os_TE_219546 Os_TE_219546 Chr6 12091605 12091606 + STOWAWAY51_OS 246 0.0004 (1/2854) 0 * Os_TE_219547 Os_TE_219545 Chr6 12091525 12091526 - MPING 430 0.0003 (1/2924) 0 * * Os_TE_219544 Chr6 12091410 12091409 - STOWAWAY51_OS 246 0.0003 (1/2930) 0 * * Os_TE_219542 Chr6 12091254 12091253 + ORSgTEMT01601122 212 0.0424 (114/2691) 0 * * Os_TE_219541 Chr6 12091242 12091243 - NDNA1TNA_OS 334 0.0258 (69/2678) 0 * Os_TE_219540 Os_TE_219540 Chr6 12091240 12091239 + NDNA1TNA_OS 334 0.0280 (72/2569) 0 * Os_TE_219541 Os_TE_219534 Chr6 12090715 12090716 + COPIA2-LTR_OS 6433 0.0004 (1/2792) 0 * Os_TE_219533 Os_TE_219533 Chr6 12090711 12090710 - COPIA2-LTR_OS 6433 0.0004 (1/2810) 0 * Os_TE_219534 Os_TE_219531 Chr6 12089691 12089692 + RETRO2_LTR 12874 0.0429 (119/2773) 0 * Os_TE_219530 Os_TE_219530 Chr6 12089687 12089686 - RETRO2_LTR 12874 0.0430 (118/2743) 0 * Os_TE_219531 Os_TE_219529 Chr6 12089616 12089615 - RETRO2_LTR 12874 0.0176 (6/341) -1 * * Os_TE_219528 Chr6 12089358 12089359 + ORSiTERTOOT00250 3262 0.0004 (1/2789) 0 * * Os_TE_219524 Chr6 12088806 12088807 - NDNA1TNA_OS 334 0.0238 (63/2648) 0 * Os_TE_219523 Os_TE_219523 Chr6 12088804 12088803 + NDNA1TNA_OS 334 0.0272 (72/2647) 0 * Os_TE_219524 Os_TE_219516 Chr6 12086586 12086587 + SPMLIKE 10989 0.0003 (1/2898) 0 * * Os_TE_219490 Chr6 12083469 12083468 - ORSgTETN00200001 10994 0.0003 (1/2991) 0 * * Os_TE_219489 Chr6 12082258 12082259 + ORSgTETNOOT00908 242 0.0081 (24/2974) 0 * * Os_TE_219473 Chr6 12076163 12076164 + SZ-67LTR 1540 0.0017 (5/2982) 0 * Os_TE_219472 Os_TE_219472 Chr6 12076159 12076158 - SZ-67LTR 1540 0.0013 (4/2983) 0 * Os_TE_219473 Os_TE_219471 Chr6 12075754 12075755 + SZ-55_LTR 10318 0.0103 (31/2998) 0 * * Os_TE_219451 Chr6 12070110 12070111 + INDITTO 263 0.0105 (30/2849) 0 * * Os_TE_219447 Chr6 12068986 12068987 - COPIA2-LTR_OS 6433 0.0003 (1/2982) 0 * Os_TE_219446 Os_TE_219446 Chr6 12068982 12068981 + COPIA2-LTR_OS 6433 0.0003 (1/2980) 0 * Os_TE_219447 Os_TE_219445 Chr6 12067610 12067611 + COPI2_LTR 4733 0.0003 (1/2969) 0 * Os_TE_219444 Os_TE_219444 Chr6 12067606 12067605 - COPI2_LTR 4733 0.0003 (1/2969) 0 * Os_TE_219445 Os_TE_219431 Chr6 12062604 12062605 + RETROFIT5_LTR 4785 0.7138 (2102/2945) 0 * Os_TE_219430 Os_TE_219430 Chr6 12062601 12062600 - RETROFIT5_LTR 4785 0.7130 (2099/2944) 0 * Os_TE_219431 Os_TE_219427 Chr6 12062232 12062231 + ORSgTETNOOT01219 231 0.0003 (1/2995) 0 * * Os_TE_219420 Chr6 12058847 12058848 - ORSgTEMT01600639 228 0.0178 (53/2981) 0 * * Os_TE_219417 Chr6 12056727 12056728 + ORSiTERTOOT00296 5553 0.0013 (4/2996) 0 * Os_TE_219416 Os_TE_219416 Chr6 12056723 12056722 - SC-3_LTR 5748 0.0013 (4/2997) 0 * Os_TE_219417 Os_TE_219415 Chr6 12055481 12055480 + ORSgTEMT00101588 319 0.0003 (1/2989) 0 * * Os_TE_219383 Chr6 12045907 12045906 + STOWAWAY9_OS 235 0.0134 (40/2986) 0 * * Os_TE_219380 Chr6 12044643 12044642 + ORSgTETNOOT00908 242 0.0390 (116/2972) 0 * * Os_TE_219379 Chr6 12044503 12044504 + TNR8-21 428 0.0137 (41/2982) 0 * Os_TE_219378 Os_TE_219378 Chr6 12044495 12044494 - TYPEG 427 0.0131 (39/2978) 0 * Os_TE_219379 Os_TE_219375 Chr6 12043033 12043032 + ORSgTEMT01601122 212 0.0123 (37/2997) 0 * * Os_TE_219369 Chr6 12041492 12041493 - COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_219368 Os_TE_219368 Chr6 12041488 12041487 + COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_219369 Os_TE_219365 Chr6 12040864 12040865 + NDNA2TNA_OS 346 0.0003 (1/2958) 0 * Os_TE_219364 Os_TE_219364 Chr6 12040862 12040861 - NDNA2TNA_OS 346 0.0003 (1/2944) 0 * Os_TE_219365 Os_TE_219349 Chr6 12037211 12037210 - TRUNCATOR2_LTR 2904 0.0074 (22/2975) 0 * * Os_TE_219342 Chr6 12033716 12033715 - TRUNCATOR 2918 0.0068 (20/2950) 0 * Os_TE_219341 Os_TE_219341 Chr6 12033715 12033716 + TRUNCATOR 2918 0.0075 (22/2951) 0 * Os_TE_219342 Os_TE_219337 Chr6 12033002 12033001 + MUDRN5_OS 374 0.0003 (1/2978) 0 * * Os_TE_219335 Chr6 12031679 12031678 + ENSPM4_OS 11610 0.1906 (546/2865) 0 * * Os_TE_219333 Chr6 12031603 12031604 + NDNA1TNA_OS 334 0.0121 (35/2889) 0 * * Os_TE_219331 Chr6 12031330 12031331 - COPI2_LTR 4733 0.0074 (22/2958) 0 * Os_TE_219330 Os_TE_219330 Chr6 12031326 12031325 + COPI2_LTR 4733 0.0074 (22/2992) 0 * Os_TE_219331 Os_TE_219328 Chr6 12030817 12030816 - CENTRE 280 0.0254 (40/1577) 0 * * Os_TE_219309 Chr6 12023394 12023393 - GYPSY-A_LTR 8951 0.0039 (6/1554) 0 * * Os_TE_219295 Chr6 12018298 12018297 + COPIA2-LTR_OS 6433 0.0074 (22/2992) 0 * * Os_TE_219284 Chr6 12012772 12012771 + ORSgTEMT01601143 237 0.0017 (5/2964) 0 * * Os_TE_219283 Chr6 12012762 12012761 - ORSgTEMT01601432 239 0.1817 (539/2966) 0 * Os_TE_219282 Os_TE_219282 Chr6 12012759 12012760 + ORSgTEMT01602181 239 0.1813 (538/2968) 0 * Os_TE_219283 Os_TE_219271 Chr6 12001000 12001001 - ORSgTEMT01600639 228 0.0017 (5/2912) 0 * * Os_TE_219265 Chr6 11998470 11998471 + COPI2_LTR 4733 0.0013 (4/2989) 0 * Os_TE_219264 Os_TE_219264 Chr6 11998466 11998465 - COPI2_LTR 4733 0.0013 (4/2990) 0 * Os_TE_219265 Os_TE_219249 Chr6 11991369 11991370 - ORSgTEMT00100583 156 0.0003 (1/2930) 0 * * Os_TE_219247 Chr6 11991327 11991326 - BAJIELTR 4500 0.0017 (5/2935) 0 * * Os_TE_219224 Chr6 11985692 11985693 - ORSgTEMT02400179 221 0.0074 (22/2980) 0 * Os_TE_219223 Os_TE_219223 Chr6 11985691 11985690 - TYPEM 227 0.0074 (22/2975) 0 * Os_TE_219224 Os_TE_219192 Chr6 11976958 11977111 - ORSgTEMT01700947 154 0.8354 (2395/2867) 1 Intact * Os_TE_219167 Chr6 11967328 11967329 - ORSiTETNOOT00134 607 0.0017 (3/1747) 0 * Os_TE_219166 Os_TE_219166 Chr6 11967321 11967320 + TWIF 586 0.0017 (3/1747) 0 * Os_TE_219167 Os_TE_219164 Chr6 11967131 11967130 - DS-RICE4N 715 0.4406 (1312/2978) 0 * * Os_TE_219151 Chr6 11964429 11964428 - ORSgTEMT02400236 224 0.0035 (6/1706) 0 * Os_TE_219150 Os_TE_219150 Chr6 11964423 11964424 - ORSgTEMT02000040 196 0.0006 (1/1703) 0 * Os_TE_219151 Os_TE_219135 Chr6 11961164 11962122 + TEMPINDAS 4259 0.4844 (840/1734) 1 Intact * Os_TE_219117 Chr6 11948675 11948674 - SZ-40LTR 2465 0.0017 (5/2982) 0 * * Os_TE_219064 Chr6 11932920 11932919 + CACTA-B 1103 0.1891 (563/2977) 0 * Os_TE_219063 Os_TE_219063 Chr6 11932919 11932920 - ORSgTETN00200001 10994 0.1831 (544/2971) 0 * Os_TE_219064 Os_TE_219027 Chr6 11911635 11911636 + ORSiCMCM00100019 2717 0.2701 (805/2980) 0 * Os_TE_219026 Os_TE_219026 Chr6 11911631 11911630 - TRUNCATOR2_LTR 2904 0.2730 (816/2989) 0 * Os_TE_219027 Os_TE_219025 Chr6 11911537 11911536 - RIREX_LTR 8828 0.0003 (1/2973) 0 * * Os_TE_218985 Chr6 11887806 11887807 + STOWAWAY50_OS 174 0.0017 (5/2996) 0 * * Os_TE_218984 Chr6 11887589 11887590 + STOWAWAY51_OS 246 0.0003 (1/2963) 0 * * Os_TE_218956 Chr6 11873514 11873515 + COPIA2-LTR_OS 6433 0.0007 (2/2983) 0 * Os_TE_218955 Os_TE_218955 Chr6 11873510 11873509 - COPIA2-LTR_OS 6433 0.0007 (2/2982) 0 * Os_TE_218956 Os_TE_218942 Chr6 11865507 11865508 + RIREX_LTR 8828 0.0010 (3/2978) 0 * Os_TE_218941 Os_TE_218941 Chr6 11865503 11865502 - RIREX_LTR 8828 0.0010 (3/2983) 0 * Os_TE_218942 Os_TE_218940 Chr6 11865364 11865365 - DITTO-2 235 0.0017 (5/2998) 0 * * Os_TE_218931 Chr6 11864160 11864161 - ORSgTETN00200001 10994 0.0003 (1/2996) 0 * Os_TE_218930 Os_TE_218930 Chr6 11864158 11864157 + SPMLIKE 10989 0.0003 (1/2997) 0 * Os_TE_218931 Os_TE_218925 Chr6 11863504 11863503 + TNR2A 152 0.0088 (26/2958) 0 * * Os_TE_218886 Chr6 11844816 11844817 + SPMLIKE 10989 0.0003 (1/2950) 0 * * Os_TE_218884 Chr6 11843239 11843240 - RIREX_LTR 8828 0.0003 (1/2983) 0 * Os_TE_218883 Os_TE_218883 Chr6 11843235 11843234 + RIREX_LTR 8828 0.0003 (1/2985) 0 * Os_TE_218884 Os_TE_218882 Chr6 11842583 11842584 + INDITTO 263 0.0674 (200/2966) 0 * Os_TE_218881 Os_TE_218881 Chr6 11842581 11842580 - INDITTO 263 0.0687 (204/2971) 0 * Os_TE_218882 Os_TE_218863 Chr6 11835554 11835555 - RIREX_LTR 8828 0.0015 (1/664) -1 * * Os_TE_218794 Chr6 11736486 11736487 + ORSgTEMT00500234 146 0.0017 (5/2981) 0 * * Os_TE_218791 Chr6 11735856 11735857 + AMYLTP 383 0.0074 (22/2956) 0 * Os_TE_218790 Os_TE_218790 Chr6 11735848 11735847 - AMYLTP 383 0.0067 (20/2963) 0 * Os_TE_218791 Os_TE_218780 Chr6 11734714 11734713 + MERMITEA 1710 0.0017 (5/2873) 0 * * Os_TE_218728 Chr6 11717659 11717660 + ORSgTEMT00501795 147 0.0223 (65/2916) 0 * * Os_TE_218724 Chr6 11716818 11716819 - F569 228 0.1940 (581/2995) 0 * Os_TE_218723 Os_TE_218723 Chr6 11716816 11716815 + F569 228 0.1922 (575/2992) 0 * Os_TE_218724 Os_TE_218715 Chr6 11712626 11712625 + ORSgTEMT00600376 329 0.0007 (2/2936) 0 * * Os_TE_218713 Chr6 11712504 11712505 - OSTE33 1012 0.0014 (4/2952) 0 * Os_TE_218712 Os_TE_218712 Chr6 11712495 11712494 - OSTE33 1012 0.0017 (5/2950) 0 * Os_TE_218713 Os_TE_218704 Chr6 11710683 11710684 - ORSgTERT00201216 11284 0.0017 (5/2998) 0 * * Os_TE_218693 Chr6 11702932 11702571 + ORSgTEMT00600272 361 0.3294 (982/2981) 1 Intact Os_TE_218691 Os_TE_218691 Chr6 11702568 11702932 - ORSgTEMT00600524 364 0.3317 (990/2985) 1 Intact Os_TE_218693 Os_TE_218687 Chr6 11701605 11701606 - NDNA1TNA_OS 334 0.0004 (1/2520) -1 * Os_TE_218686 Os_TE_218686 Chr6 11701603 11701602 + NDNA1TNA_OS 334 0.0006 (1/1621) -1 * Os_TE_218687 Os_TE_218635 Chr6 11683327 11683328 - MuDR4_OS 7610 0.1855 (550/2965) 0 * Os_TE_218634 Os_TE_218634 Chr6 11683320 11683319 - MuDR4_OS 7610 0.1916 (573/2990) 0 * Os_TE_218635 Os_TE_218630 Chr6 11682554 11682555 - COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_218629 Os_TE_218629 Chr6 11682550 11682549 + COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_218630 Os_TE_218627 Chr6 11679279 11679280 - SZLTR 1249 0.0003 (1/2986) 0 * Os_TE_218626 Os_TE_218626 Chr6 11679275 11679274 + RETRO1_LTR 8314 0.0003 (1/2986) 0 * Os_TE_218627 Os_TE_218611 Chr6 11673570 11673571 + OSTE33 1012 0.0242 (72/2979) 0 * Os_TE_218610 Os_TE_218610 Chr6 11673561 11673560 + OSTE33 1012 0.0232 (69/2980) 0 * Os_TE_218611 Os_TE_218605 Chr6 11670871 11670872 + RETRO2_LTR 12874 0.1792 (530/2958) 0 * Os_TE_218604 Os_TE_218604 Chr6 11670867 11670866 - RETRO2_LTR 12874 0.1787 (534/2989) 0 * Os_TE_218605 Os_TE_218571 Chr6 11657322 11657323 - RIRE2_LTR 11306 0.0003 (1/2943) 0 * Os_TE_218570 Os_TE_218570 Chr6 11657318 11657317 + RIRE2_LTR 11306 0.0003 (1/2941) 0 * Os_TE_218571 Os_TE_218512 Chr6 11638090 11638091 + CACTA-M 1129 0.0050 (15/2972) 0 * Os_TE_218511 Os_TE_218511 Chr6 11638088 11638087 - CACTA-M 1129 0.0044 (13/2971) 0 * Os_TE_218512 Os_TE_218510 Chr6 11637697 11637698 - RIRE2_LTR 11306 0.0013 (4/2973) 0 * Os_TE_218509 Os_TE_218509 Chr6 11637693 11637692 + RIRE2_LTR 11306 0.0007 (2/2973) 0 * Os_TE_218510 Os_TE_218507 Chr6 11637515 11637514 - RETROSAT3_LTR 11537 0.0283 (84/2973) 0 * * Os_TE_218451 Chr6 11618948 11618949 + GYPSY-A_LTR 8951 0.0007 (2/2977) 0 * * Os_TE_218435 Chr6 11608433 11608432 - RIREX_LTR 8828 0.0059 (7/1196) 0 * * Os_TE_218433 Chr6 11607500 11607499 + CACTA-J 1159 0.0033 (10/2990) 0 * * Os_TE_218423 Chr6 11603201 11602643 - SZ-7A_LTR 11400 0.7766 (1001/1289) 0.67 Solo_LTR * Os_TE_218408 Chr6 11587995 11587994 + STOWAWAY1_OS 149 0.0037 (11/2969) 0 * Os_TE_218407 Os_TE_218407 Chr6 11587994 11587995 - ORSgTEMT01700203 133 0.0027 (8/2976) 0 * Os_TE_218408 Os_TE_218405 Chr6 11586255 11586256 + NDNA1TNA_OS 334 0.0013 (4/2973) 0 * * Os_TE_218393 Chr6 11580378 11581439 - CACTA-J 1159 0.4140 (1014/2449) 1 Intact * Os_TE_218390 Chr6 11579294 11579582 - MUDRN4_OS 332 0.3577 (997/2787) 1 Intact * Os_TE_218387 Chr6 11578414 11578261 + ORSgTEMT01701782 154 0.3643 (1078/2959) 1 Intact Os_TE_218386 Os_TE_218386 Chr6 11578261 11578414 - ORSgTEMT01701782 154 0.3953 (1088/2752) 1 Intact Os_TE_218387 Os_TE_218383 Chr6 11577595 11577596 - SZ-62LTR 3649 0.0105 (31/2959) 0 * Os_TE_218382 Os_TE_218382 Chr6 11577591 11577590 + SZ-62LTR 3649 0.0107 (30/2816) 0 * Os_TE_218383 Os_TE_218381 Chr6 11577372 11577371 + ORSgTETNOOT00908 242 0.0017 (5/2933) 0 * * Os_TE_218379 Chr6 11576297 11576296 - RETROSAT2LTRA 3112 0.0214 (64/2989) 0 * * Os_TE_218375 Chr6 11574503 11562000 + RETRO2_LTR 12874 0.3214 (921/2866) 1 Intact Os_TE_218362 Os_TE_218362 Chr6 11562000 11574503 - RETRO2_LTR 12874 0.3498 (1038/2967) 1 Intact Os_TE_218375 Os_TE_218358 Chr6 11559050 11559051 + COPIA2-LTR_OS 6433 0.0013 (4/2973) 0 * * Os_TE_218354 Chr6 11557994 11557621 - ORSgTEMT03800066 376 0.5120 (1518/2965) 1 Intact Os_TE_218351 Os_TE_218351 Chr6 11557620 11557994 + BUHUI 375 0.5062 (1507/2977) 1 Intact Os_TE_218354 Os_TE_218348 Chr6 11554334 11554333 + ORSiTERTOOT00226 792 0.0008 (2/2607) 0 * * Os_TE_218344 Chr6 11553139 11553138 + ORSgTEMT01602580 283 0.5952 (1757/2952) 0 * Os_TE_218343 Os_TE_218343 Chr6 11553113 11553114 - ORSgTEMT01600497 234 0.5908 (1728/2925) 0 * Os_TE_218344 Os_TE_218341 Chr6 11552530 11552764 - ORSgTEMT01600531 236 0.4180 (1215/2907) 1 Intact * Os_TE_218327 Chr6 11548214 11550021 + MERMITEA 1710 0.4382 (1234/2816) 1 Intact * Os_TE_218323 Chr6 11546292 11548087 + MERMITEB 1610 0.2955 (622/2105) 1 Intact * Os_TE_218305 Chr6 11535919 11535920 + STOWAWAY8_OS 259 0.1978 (437/2209) 0 * * Os_TE_218304 Chr6 11535877 11535878 + SETARIA2 1142 0.0544 (128/2352) 0 * Os_TE_218303 Os_TE_218303 Chr6 11535873 11535872 + SETARIA2 1142 0.3309 (598/1807) 0 * Os_TE_218304 Os_TE_218302 Chr6 11535806 11535543 + ORSgTEMT01600072 238 0.6120 (1604/2621) 1 Intact * Os_TE_218293 Chr6 11534183 11534182 - RETRO2_LTR 12874 0.0041 (9/2181) -1 * * Os_TE_218271 Chr6 11528188 11527930 + STOWAWAY41_OS 264 0.5833 (1603/2748) 1 Intact * Os_TE_218262 Chr6 11518501 11518500 + STOWAWAY47_OS 148 0.0010 (3/2981) 0 * Os_TE_218261 Os_TE_218261 Chr6 11518498 11518499 - STOWAWAY47_OS 148 0.0010 (3/2979) 0 * Os_TE_218262 Os_TE_218253 Chr6 11515311 11515310 - RETRO1_LTR 8314 0.0034 (9/2610) 0 * * Os_TE_218224 Chr6 11505267 11505266 - ORSiTETNOOT00134 607 0.0003 (1/2984) 0 * * Os_TE_218223 Chr6 11503967 11503968 + SC-8_LTR 4951 0.0004 (1/2844) 0 * Os_TE_218222 Os_TE_218222 Chr6 11503963 11503962 - SC-8_LTR 4951 0.0004 (1/2845) 0 * Os_TE_218223 Os_TE_218218 Chr6 11498002 11498001 + STOWAWAY8_OS 259 0.2478 (656/2647) 0 * * Os_TE_218215 Chr6 11497760 11497759 - COPIA2-LTR_OS 6433 0.0005 (1/1857) 0 * * Os_TE_218214 Chr6 11497597 11497397 - ORSgTETNOOT02565 240 0.6265 (1771/2827) 1 Intact * Os_TE_218207 Chr6 11496522 11496521 + RIREX_LTR 8828 0.0005 (1/1874) 0 * * Os_TE_218203 Chr6 11495369 11495368 + CACTA-E 1207 0.2883 (774/2685) 0 * * Os_TE_218192 Chr6 11494058 11494059 - RIREX_LTR 8828 0.0003 (1/2996) 0 * Os_TE_218191 Os_TE_218191 Chr6 11494054 11494053 + RIREX_LTR 8828 0.0003 (1/2996) 0 * Os_TE_218192 Os_TE_218189 Chr6 11492893 11492609 + ORSgTEMT05200196 285 0.6660 (1868/2805) 1 Intact Os_TE_218188 Os_TE_218188 Chr6 11492608 11492893 + YOUREN 286 0.6203 (1856/2992) 1 Intact Os_TE_218189 Os_TE_218185 Chr6 11492045 11492044 - NDNA1TNA_OS 334 0.0005 (1/1828) 0 * * Os_TE_218183 Chr6 11491635 11491390 + ORSgTEMT01602250 243 0.6747 (1850/2742) 1 Intact Os_TE_218180 Os_TE_218180 Chr6 11491390 11491632 - ORSgTEMT01600152 226 0.6513 (1812/2782) 1 Intact Os_TE_218183 Os_TE_218170 Chr6 11489974 11489975 - STOWAWAY51_OS 246 0.0003 (1/2985) 0 * * Os_TE_218163 Chr6 11485528 11485529 + ORSiTERTOOT00427 5125 0.0023 (7/2980) 0 * Os_TE_218162 Os_TE_218162 Chr6 11485524 11485523 - ORSiTERTOOT00427 5125 0.0027 (8/2981) 0 * Os_TE_218163 Os_TE_218154 Chr6 11478317 11478316 - AMYLTP 383 0.0239 (70/2926) 0 * * Os_TE_218146 Chr6 11475061 11475062 + TRUNCATOR 2918 0.0647 (193/2981) 0 * * Os_TE_218138 Chr6 11468628 11468629 - SZ-19LTR 1513 0.0017 (5/2994) 0 * Os_TE_218137 Os_TE_218137 Chr6 11468624 11468623 + SZ-19LTR 1513 0.0017 (5/2991) 0 * Os_TE_218138 Os_TE_218131 Chr6 11466470 11466471 - KIDDOC 275 0.0818 (243/2972) 0 * Os_TE_218130 Os_TE_218130 Chr6 11466466 11466465 + KIDDOC 275 0.0804 (239/2971) 0 * Os_TE_218131 Os_TE_218129 Chr6 11466403 11466404 - NDNA1TNA_OS 334 0.0077 (22/2852) 0 * Os_TE_218128 Os_TE_218128 Chr6 11466401 11466400 + NDNA1TNA_OS 334 0.0083 (24/2888) 0 * Os_TE_218129 Os_TE_218116 Chr6 11462713 11462714 - SC-8_LTR 4951 0.0003 (1/2983) 0 * Os_TE_218115 Os_TE_218115 Chr6 11462709 11462708 + SC-8_LTR 4951 0.0007 (2/2980) 0 * Os_TE_218116 Os_TE_218114 Chr6 11462613 11462614 - RIRE2_LTR 11306 0.0841 (251/2985) 0 * Os_TE_218113 Os_TE_218113 Chr6 11462609 11462608 + RIREX_LTR 8828 0.0848 (253/2985) 0 * Os_TE_218114 Os_TE_218108 Chr6 11458220 11458219 - STOWAWAY1_OS 149 0.1989 (595/2992) 0 * Os_TE_218107 Os_TE_218107 Chr6 11458219 11458220 - ORSgTEMT01700216 124 0.1957 (584/2984) 0 * Os_TE_218108 Os_TE_218105 Chr6 11457365 11457364 - TYPEM 227 0.0010 (3/2994) 0 * * Os_TE_218089 Chr6 11451507 11451508 - MIDWAY 985 0.0007 (2/2988) 0 * * Os_TE_218078 Chr6 11446239 11446240 + TNR8-21 428 0.3025 (534/1765) 0 * * Os_TE_218071 Chr6 11443410 11443409 + ORSgTEMT01701224 156 0.1455 (245/1684) 0 * Os_TE_218070 Os_TE_218070 Chr6 11443392 11443393 + ORSiOTOT00000037 220 0.1440 (242/1681) 0 * Os_TE_218071 Os_TE_218059 Chr6 11436793 11436792 - MERMITE18D 1491 0.0659 (192/2912) 0 * * Os_TE_218058 Chr6 11435096 11435097 + GYPSY-A_LTR 8951 0.0013 (4/2987) 0 * Os_TE_218057 Os_TE_218057 Chr6 11435092 11435091 - SZ-40LTR 2465 0.0013 (4/2970) 0 * Os_TE_218058 Os_TE_218056 Chr6 11434721 11434722 + ORSiTETN00100011 676 0.0650 (194/2986) 0 * Os_TE_218055 Os_TE_218055 Chr6 11434709 11434708 + DS-RICE4N 715 0.0653 (195/2986) 0 * Os_TE_218056 Os_TE_218054 Chr6 11434653 11434652 - TRUNCATOR 2918 0.0013 (4/2986) 0 * Os_TE_218053 Os_TE_218053 Chr6 11434652 11434653 + TRUNCATOR 2918 0.0013 (4/2983) 0 * Os_TE_218054 Os_TE_218047 Chr6 11431704 11431705 - SZ-COM 1308 0.0011 (3/2694) 0 * * Os_TE_218039 Chr6 11427581 11427580 + RIREX_LTR 8828 0.0021 (5/2412) 0 * * Os_TE_218033 Chr6 11426384 11426627 + TESS 244 0.3356 (918/2735) 1 Intact * Os_TE_218027 Chr6 11421439 11421440 + ORSgTEMT00100272 356 0.0004 (1/2430) 0 * * Os_TE_218022 Chr6 11421035 11409053 - TRUNCATOR 2918 0.4176 (963/2306) 1 Intact * Os_TE_217989 Chr6 11408424 11407171 - ORSgTETN00200001 10994 0.3663 (979/2673) 1 Intact * Os_TE_217986 Chr6 11407043 11407044 - MERMITE-17 2759 0.0894 (241/2696) 0 * * Os_TE_217977 Chr6 11404418 11404419 - TEMPINDAS 4259 0.0218 (59/2706) 0 * * Os_TE_217974 Chr6 11402818 11402819 - COPIA2-LTR_OS 6433 0.0003 (1/2983) 0 * Os_TE_217973 Os_TE_217973 Chr6 11402814 11402813 + COPIA2-LTR_OS 6433 0.0004 (1/2653) 0 * Os_TE_217974 Os_TE_217882 Chr6 11377768 11377769 + COPIA2-LTR_OS 6433 0.0004 (1/2598) 0 * * Os_TE_217878 Chr6 11377085 11377086 + TRUNCATOR 2918 0.0793 (206/2599) 0 * * Os_TE_217861 Chr6 11372723 11360585 + SPMLIKE 10989 0.3854 (844/2190) -1 Intact * Os_TE_217845 Chr6 11359386 11359387 - COPIA2-LTR_OS 6433 0.0008 (2/2553) 0 * * Os_TE_217810 Chr6 11348259 11348258 - COPIA2-LTR_OS 6433 0.0004 (1/2598) 0 * * Os_TE_217766 Chr6 11332381 11332382 + STOWAWAY9_OS 235 0.0091 (24/2626) 0 * * Os_TE_217758 Chr6 11324251 11324252 - MuDR3_OS 8604 0.0097 (26/2674) 0 * * Os_TE_217720 Chr6 11309182 11310193 - OSTE15 1168 0.8980 (2518/2804) 1 Intact * Os_TE_217714 Chr6 11307940 11307941 - COPIA2-LTR_OS 6433 0.0003 (1/2864) 0 * Os_TE_217713 Os_TE_217713 Chr6 11307936 11307935 + COPIA2-LTR_OS 6433 0.0003 (1/2877) 0 * Os_TE_217714 Os_TE_217708 Chr6 11306867 11306868 - HARB-N1_OS 2589 0.1220 (361/2958) 0 * * Os_TE_217706 Chr6 11305871 11305635 + STOWAWAY21_OS 243 0.8821 (2589/2935) 1 Intact Os_TE_217703 Os_TE_217703 Chr6 11305633 11305845 + ORSgTEMT01601122 212 0.8787 (2528/2877) 1 Intact Os_TE_217706 Os_TE_217701 Chr6 11305246 11305245 + RETRO2A_LTR 12895 0.0008 (2/2368) 0 * * Os_TE_217696 Chr6 11303132 11303028 + ATLANTYS-LTR_OS 13740 0.8896 (2651/2980) 1 Intact * Os_TE_217691 Chr6 11302280 11301157 + CACTA-H 1152 0.8773 (2525/2878) 1 Intact * Os_TE_217685 Chr6 11300958 11300957 + SINE9_OS 293 0.0033 (10/2987) 0 * * Os_TE_217682 Chr6 11299509 11297955 + MERMITE18E 1528 0.8847 (2602/2941) 1 Intact Os_TE_217680 Os_TE_217680 Chr6 11297952 11299505 + MERMITE18E 1528 0.8850 (2639/2982) 1 Intact Os_TE_217682 Os_TE_217677 Chr6 11294603 11294604 - ORSgTEMT02000041 194 0.0208 (62/2975) 0 * * Os_TE_217668 Chr6 11290201 11290200 + RETRO2A_LTR 12895 0.0003 (1/2978) 0 * * Os_TE_217657 Chr6 11282998 11282999 - ORSgTEMT02400092 225 0.0017 (5/2948) 0 * * Os_TE_217655 Chr6 11282362 11282363 + MDR2 6967 0.0080 (24/2998) 0 * Os_TE_217654 Os_TE_217654 Chr6 11282353 11282352 - MDR2 6967 0.0084 (25/2967) 0 * Os_TE_217655 Os_TE_217646 Chr6 11281872 11281873 + ORSgTEMT01601591 242 0.0003 (1/2979) 0 * * Os_TE_217643 Chr6 11279348 11279349 - SC-8_LTR 4951 0.0003 (1/2974) 0 * Os_TE_217642 Os_TE_217642 Chr6 11279344 11279343 + ORSiTERTOOT00381 4988 0.0003 (1/2985) 0 * Os_TE_217643 Os_TE_217628 Chr6 11267001 11267002 - SC-3_LTR 5748 0.0037 (11/2994) 0 * Os_TE_217627 Os_TE_217627 Chr6 11266997 11266996 + ORSiTERTOOT00296 5553 0.0033 (10/2996) 0 * Os_TE_217628 Os_TE_217609 Chr6 11254535 11254536 + RETRO2_LTR 12874 0.0017 (5/2974) 0 * Os_TE_217608 Os_TE_217608 Chr6 11254531 11254530 - RETRO2_LTR 12874 0.0013 (4/2971) 0 * Os_TE_217609 Os_TE_217575 Chr6 11244023 11244024 - TRUNCATOR2_LTR 2904 0.0277 (82/2959) 0 * Os_TE_217574 Os_TE_217574 Chr6 11244019 11244018 + ORSiCMCM00100019 2717 0.0266 (79/2965) 0 * Os_TE_217575 Os_TE_217573 Chr6 11243096 11243097 + TWIF 586 0.4144 (1152/2780) 0 * Os_TE_217572 Os_TE_217572 Chr6 11243089 11243088 - ORSiTETNOOT00209 3624 0.4082 (1180/2891) 0 * Os_TE_217573 Os_TE_217571 Chr6 11243065 11243064 - STOWAWAY51_OS 246 0.0004 (1/2470) 0 * * Os_TE_217570 Chr6 11242857 11242858 + OSTE33 1012 0.0017 (5/2877) 0 * Os_TE_217569 Os_TE_217569 Chr6 11242848 11242847 + OSTE33 1012 0.0014 (4/2877) 0 * Os_TE_217570 Os_TE_217540 Chr6 11233404 11233405 + TWIFBIG 3567 0.0074 (22/2992) 0 * Os_TE_217539 Os_TE_217539 Chr6 11233397 11233396 - ORSiTETNOOT00200 3563 0.0074 (22/2990) 0 * Os_TE_217540 Os_TE_217535 Chr6 11231157 11231158 + RETRO2_LTR 12874 0.0067 (20/2988) 0 * Os_TE_217534 Os_TE_217534 Chr6 11231153 11231152 - RETRO2_LTR 12874 0.0067 (20/2985) 0 * Os_TE_217535 Os_TE_217498 Chr6 11215571 11215572 + ORSgTETNOOT01219 231 0.0003 (1/2986) 0 * Os_TE_217497 Os_TE_217497 Chr6 11215563 11215562 + ORSgTETNOOT00908 242 0.0003 (1/2986) 0 * Os_TE_217498 Os_TE_217476 Chr6 11202811 11202810 - OSTE19 162 0.0017 (5/2993) 0 * * Os_TE_217475 Chr6 11200026 11200025 + JOUZHEN 596 0.2236 (656/2934) 0 * * Os_TE_217465 Chr6 11194897 11194896 + ORSiTERTOOT00088 856 0.0004 (1/2824) 0 * * Os_TE_217446 Chr6 11184684 11184685 + ORSiTERTOOT00296 5553 0.0067 (20/2990) 0 * * Os_TE_217443 Chr6 11183840 11183841 - MUDRN3_OS 903 0.0082 (24/2914) 0 * Os_TE_217442 Os_TE_217442 Chr6 11183832 11183831 - MUDRN3_OS 903 0.0086 (25/2923) 0 * Os_TE_217443 Os_TE_217441 Chr6 11183593 11183594 - SZ-40LTR 2465 0.0003 (1/2935) 0 * Os_TE_217440 Os_TE_217440 Chr6 11183589 11183588 + GYPSY-A_LTR 8951 0.0003 (1/2918) 0 * Os_TE_217441 Os_TE_217439 Chr6 11183054 11183404 - MDM1 326 0.8251 (2100/2545) 1 Intact * Os_TE_217438 Chr6 11180997 11180996 + OSTE21 1271 0.2143 (618/2884) 0 * * Os_TE_217427 Chr6 11177871 11177872 + MERMITEB 1610 0.2248 (666/2963) 0 * Os_TE_217426 Os_TE_217426 Chr6 11177865 11177864 - MERMITE18B 1306 0.2247 (667/2969) 0 * Os_TE_217427 Os_TE_217425 Chr6 11177774 11177775 + SEVERIN-2 1952 0.2735 (812/2969) 0 * * Os_TE_217408 Chr6 11175220 11175219 - RIREX_LTR 8828 0.2892 (799/2763) 0 * * Os_TE_217379 Chr6 11167904 11167905 + F770 284 0.0007 (2/2826) 0 * * Os_TE_217378 Chr6 11166707 11166708 - RIREX_LTR 8828 0.0023 (6/2576) 0 * * Os_TE_217358 Chr6 11158431 11158432 + RETRO2A_LTR 12895 0.0003 (1/2907) 0 * Os_TE_217357 Os_TE_217357 Chr6 11158427 11158426 - RETRO1_LTR 8314 0.0003 (1/2922) 0 * Os_TE_217358 Os_TE_217350 Chr6 11157720 11157721 - TRUNCATOR 2918 0.0013 (3/2223) 0 * * Os_TE_217340 Chr6 11155043 11155042 + SZ-40LTR 2465 0.0012 (3/2404) 0 * * Os_TE_217330 Chr6 11147505 11147506 - RIRE2_LTR 11306 0.0004 (1/2371) 0 * Os_TE_217329 Os_TE_217329 Chr6 11147501 11147500 - ORSgTERT00201216 11284 0.0004 (1/2377) 0 * Os_TE_217330 Os_TE_217306 Chr6 11140996 11140881 - ORSgTEMT00500759 133 0.6638 (1544/2326) 1 Intact * Os_TE_217301 Chr6 11139550 11139214 + ORSgTEMT00100272 356 0.0681 (200/2936) 1 Intact Os_TE_217300 Os_TE_217300 Chr6 11139215 11139547 + NDNA1TNA_OS 334 0.0680 (200/2943) 1 Intact Os_TE_217301 Os_TE_217298 Chr6 11137760 11137761 - ORSgTERT00201216 11284 0.0004 (1/2336) 0 * * Os_TE_217287 Chr6 11134684 11134685 - ORSgTEMT00300160 419 0.0714 (214/2998) 0 * * Os_TE_217275 Chr6 11131705 11131704 - RIREX_LTR 8828 0.0003 (1/2992) 0 * * Os_TE_217260 Chr6 11126217 11126218 - TRUNCATOR2_LTR 2904 0.0035 (10/2859) 0 * * Os_TE_217256 Chr6 11126026 11126025 + SZ-48LTR 3632 0.0003 (1/2860) 0 * * Os_TE_217246 Chr6 11124178 11124179 + ENSPM4_OS 11610 0.2926 (859/2936) 0 * * Os_TE_217207 Chr6 11107448 11107449 + ORSiTERT00200145 12238 0.1707 (502/2940) 0 * Os_TE_217206 Os_TE_217206 Chr6 11107444 11107443 - SZ-67LTR 1540 0.1777 (525/2955) 0 * Os_TE_217207 Os_TE_217189 Chr6 11101929 11101930 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * * Os_TE_217187 Chr6 11101757 11101756 - RIRE2_LTR 11306 0.0007 (2/2995) 0 * * Os_TE_217165 Chr6 11085158 11085157 - RIREX_LTR 8828 0.0003 (1/2996) 0 * Os_TE_217164 Os_TE_217164 Chr6 11085087 11085088 - ORSiTETNOOT00200 3563 0.0003 (1/2991) 0 * Os_TE_217165 Os_TE_217099 Chr6 11062777 11062778 - SC-3_LTR 5748 0.0003 (1/2998) 0 * * Os_TE_217073 Chr6 11054768 11054769 - MUDRN3_OS 903 0.0244 (72/2945) 0 * * Os_TE_217071 Chr6 11053830 11053831 + ORSgTEMT01702344 120 0.0003 (1/2995) 0 * * Os_TE_217064 Chr6 11053016 11053015 + DEBOAT 110 0.0003 (1/2927) 0 * * Os_TE_217042 Chr6 11043971 11043972 - ORSgTEMT00600524 364 0.0074 (22/2983) 0 * Os_TE_217041 Os_TE_217041 Chr6 11043969 11043968 + ORSgTEMT00600272 361 0.0077 (23/2983) 0 * Os_TE_217042 Os_TE_217039 Chr6 11042394 11042393 + RIREX_LTR 8828 0.0708 (212/2994) 0 * * Os_TE_217038 Chr6 11042212 11042213 - TYPEM 227 0.0037 (11/2989) 0 * Os_TE_217037 Os_TE_217037 Chr6 11042211 11042210 - ORSgTEMT02400179 221 0.0034 (10/2984) 0 * Os_TE_217038 Os_TE_217034 Chr6 11039897 11039898 + HARB-1_OS 5166 0.0007 (2/2921) 0 * Os_TE_217033 Os_TE_217033 Chr6 11039895 11039894 - HARB-1_OS 5166 0.0007 (2/2931) 0 * Os_TE_217034 Os_TE_217031 Chr6 11038257 11038258 - COPIA2-LTR_OS 6433 0.0003 (1/2966) 0 * * Os_TE_217028 Chr6 11038034 11038033 + ORSgTETNOOT01930 140 0.1008 (297/2945) 0 * * Os_TE_217020 Chr6 11035756 11035755 - STOWAWAY12_OS 312 0.1029 (303/2944) 0 * Os_TE_217019 Os_TE_217019 Chr6 11035755 11035756 - ORSgTEMT02900061 318 0.1018 (301/2957) 0 * Os_TE_217020 Os_TE_217008 Chr6 11027642 11027643 - SC-8_LTR 4951 0.0007 (2/2980) 0 * Os_TE_217007 Os_TE_217007 Chr6 11027638 11027637 + SC-8_LTR 4951 0.0007 (2/2707) 0 * Os_TE_217008 Os_TE_216998 Chr6 11024012 11024013 - SC-3_LTR 5748 0.0003 (1/2960) 0 * Os_TE_216997 Os_TE_216997 Chr6 11024008 11024007 + ORSiTERTOOT00296 5553 0.0003 (1/2967) 0 * Os_TE_216998 Os_TE_216991 Chr6 11021767 11021768 - ORSiTERTOOT00332 5395 0.0004 (1/2652) 0 * Os_TE_216990 Os_TE_216990 Chr6 11021763 11021762 + ORSiTERTOOT00332 5395 0.0004 (1/2661) 0 * Os_TE_216991 Os_TE_216989 Chr6 11021370 11021371 - ORSgTERT00201216 11284 0.0224 (67/2993) 0 * Os_TE_216988 Os_TE_216988 Chr6 11021366 11021365 - RIRE2_LTR 11306 0.0227 (68/2991) 0 * Os_TE_216989 Os_TE_216957 Chr6 11001561 11001562 - SZ-22_LTR 4403 0.0010 (3/2996) 0 * Os_TE_216956 Os_TE_216956 Chr6 11001557 11001556 + ORSiTERTOOT00226 792 0.0010 (3/2997) 0 * Os_TE_216957 Os_TE_216946 Chr6 10977769 10998273 - ORSgTETN00200001 10994 0.0409 (122/2984) 1 Intact * Os_TE_216930 Chr6 10967266 10977945 + SPMLIKE 10989 0.0399 (119/2983) 1 Intact * Os_TE_216929 Chr6 10966980 10966981 - RIREX_LTR 8828 0.0027 (8/2989) 0 * Os_TE_216928 Os_TE_216928 Chr6 10966976 10966975 + RIREX_LTR 8828 0.0027 (8/2983) 0 * Os_TE_216929 Os_TE_216927 Chr6 10966804 10966805 + ORSgTERT00100203 3544 0.0003 (1/2977) 0 * * Os_TE_216923 Chr6 10965441 10965442 - SZ-67LTR 1540 0.0227 (68/2990) 0 * Os_TE_216922 Os_TE_216922 Chr6 10965437 10965436 + SZ-67LTR 1540 0.0224 (67/2991) 0 * Os_TE_216923 Os_TE_216921 Chr6 10965435 10965436 - SZ-40LTR 2465 0.0003 (1/2993) 0 * Os_TE_216920 Os_TE_216920 Chr6 10965431 10965430 + GYPSY-A_LTR 8951 0.0003 (1/2930) 0 * Os_TE_216921 Os_TE_216914 Chr6 10962973 10962974 - RIREX_LTR 8828 0.0020 (6/2964) 0 * * Os_TE_216912 Chr6 10962384 10962385 + F569 228 0.0051 (15/2969) 0 * Os_TE_216911 Os_TE_216911 Chr6 10962382 10962381 - F569 228 0.0054 (16/2973) 0 * Os_TE_216912 Os_TE_216910 Chr6 10962099 10962100 - SC-8_LTR 4951 0.0017 (5/2964) 0 * Os_TE_216909 Os_TE_216909 Chr6 10962095 10962094 + SC-8_LTR 4951 0.0017 (5/2972) 0 * Os_TE_216910 Os_TE_216906 Chr6 10960209 10960210 - SC-3_LTR 5748 0.0003 (1/2995) 0 * Os_TE_216905 Os_TE_216905 Chr6 10960205 10960204 + ORSiTERTOOT00296 5553 0.0003 (1/2998) 0 * Os_TE_216906 Os_TE_216902 Chr6 10959672 10959673 + ORSgTEMT00100272 356 0.0080 (24/2994) 0 * * Os_TE_216869 Chr6 10925270 10925269 - SZ-40LTR 2465 0.0029 (8/2789) 0 * * Os_TE_216866 Chr6 10922258 10922259 + SC-8_LTR 4951 0.0003 (1/2956) 0 * Os_TE_216865 Os_TE_216865 Chr6 10922254 10922253 - SC-8_LTR 4951 0.0003 (1/2963) 0 * Os_TE_216866 Os_TE_216860 Chr6 10919553 10919554 - RIREX_LTR 8828 0.0004 (1/2854) 0 * Os_TE_216859 Os_TE_216859 Chr6 10919549 10919548 + RIREX_LTR 8828 0.0004 (1/2856) 0 * Os_TE_216860 Os_TE_216848 Chr6 10914743 10914744 + SC-8_LTR 4951 0.0003 (1/2988) 0 * Os_TE_216847 Os_TE_216847 Chr6 10914739 10914738 - SC-8_LTR 4951 0.0003 (1/2993) 0 * Os_TE_216848 Os_TE_216829 Chr6 10910677 10910678 + OSTE15 1168 0.0017 (5/2997) 0 * * Os_TE_216815 Chr6 10907937 10907936 - OSTE33 1012 0.0478 (143/2989) 0 * * Os_TE_216803 Chr6 10904448 10904447 - RETROSAT4_LTR 13504 0.1540 (453/2941) 0 * * Os_TE_216800 Chr6 10903754 10903755 + Cassandra_OS-LTR 764 0.0003 (1/2940) 0 * * Os_TE_216799 Chr6 10903473 10899963 - MuDR4_OS 7610 0.7175 (1824/2542) 1 Intact * Os_TE_216793 Chr6 10896949 10892628 - SZ-22_LTR 4403 0.7004 (2097/2994) 1 Intact Os_TE_216781 Os_TE_216781 Chr6 10892628 10893404 + ORSiTERTOOT00097 759 0.7006 (2099/2996) 1 Intact Os_TE_216793 Os_TE_216779 Chr6 10891855 10890760 + SETARIA2 1142 0.2943 (878/2983) 1 Intact Os_TE_216774 Os_TE_216774 Chr6 10890760 10891855 + SETARIA2 1142 0.2950 (879/2980) 1 Intact Os_TE_216779 Os_TE_216772 Chr6 10886798 10886799 + YOUREN 286 0.0017 (5/2980) 0 * * Os_TE_216763 Chr6 10885957 10885956 - EnSpm-16_OS 13336 0.0027 (8/2992) 0 * * Os_TE_216761 Chr6 10884988 10884989 - RETROSAT4_LTR 13504 0.0013 (4/2993) 0 * Os_TE_216760 Os_TE_216760 Chr6 10884984 10884983 + RETROSAT4_LTR 13504 0.0017 (5/2932) 0 * Os_TE_216761 Os_TE_216753 Chr6 10880604 10880605 - GYPSY-A_LTR 8951 0.0020 (6/2980) 0 * Os_TE_216752 Os_TE_216752 Chr6 10880600 10880599 + GYPSY-A_LTR 8951 0.0013 (4/2986) 0 * Os_TE_216753 Os_TE_216746 Chr6 10879817 10879816 + OSTE15 1168 0.0003 (1/2968) 0 * * Os_TE_216743 Chr6 10877062 10877061 + ORSgTEMT01602181 239 0.0064 (19/2988) 0 * Os_TE_216742 Os_TE_216742 Chr6 10877059 10877060 - ORSgTEMT01602404 253 0.0064 (19/2984) 0 * Os_TE_216743 Os_TE_216741 Chr6 10876925 10876924 + STOWAWAY44_OS 240 0.0013 (4/2997) 0 * Os_TE_216740 Os_TE_216740 Chr6 10876922 10876923 - STOWAWAY44_OS 240 0.0010 (3/2992) 0 * Os_TE_216741 Os_TE_216732 Chr6 10872618 10872619 - GYPSY-A_LTR 8951 0.0037 (11/2997) 0 * Os_TE_216731 Os_TE_216731 Chr6 10872614 10872613 + SZ-40LTR 2465 0.0037 (11/2998) 0 * Os_TE_216732 Os_TE_216727 Chr6 10870314 10870315 - ENSPM4_OS 11610 0.0906 (127/1402) 0 * * Os_TE_216722 Chr6 10864374 10864373 - TRUNCATOR2_LTR 2904 0.0155 (22/1416) 0 * * Os_TE_216721 Chr6 10864013 10864014 + SZ-62LTR 3649 0.0064 (9/1415) 0 * Os_TE_216720 Os_TE_216720 Chr6 10864009 10864008 - SZ-62LTR 3649 0.0064 (9/1402) 0 * Os_TE_216721 Os_TE_216690 Chr6 10847760 10847759 + OSMU5 4881 0.5543 (1648/2973) 0 * * Os_TE_216687 Chr6 10846045 10846046 - OLO24 345 0.0071 (21/2962) 0 * Os_TE_216686 Os_TE_216686 Chr6 10846043 10846042 + OLO24 345 0.0067 (20/2974) 0 * Os_TE_216687 Os_TE_216682 Chr6 10844049 10844050 - RIREX_LTR 8828 0.0003 (1/2989) 0 * * Os_TE_216680 Chr6 10843502 10843503 - RIRE2_LTR 11306 0.0126 (37/2936) 0 * * Os_TE_216665 Chr6 10836772 10836773 - RIRE3A_LTR 10580 0.0030 (9/2974) 0 * * Os_TE_216655 Chr6 10835119 10835118 + EnSpm-N2_OS 1282 0.1549 (451/2912) 0 * * Os_TE_216654 Chr6 10835096 10835097 - RIREX_LTR 8828 0.0093 (27/2911) 0 * * Os_TE_216652 Chr6 10835069 10835068 - LINE5A 437 0.8427 (2469/2930) 0.95 * * Os_TE_216650 Chr6 10834265 10834264 + GYPSY-A_LTR 8951 0.0003 (1/2971) 0 * * Os_TE_216649 Chr6 10834118 10834117 + SZ-62LTR 3649 0.0003 (1/2973) 0 * * Os_TE_216635 Chr6 10825499 10831934 + RIRE5-LTR_OS 6427 0.7576 (1675/2211) -1 Intact Os_TE_216634 Os_TE_216634 Chr6 10825441 10825117 - MUDRN4_OS 332 0.7414 (1548/2088) -1 Intact Os_TE_216635 Os_TE_216631 Chr6 10823466 10823467 + MuDR2_OS 6770 0.0253 (73/2889) 0 * Os_TE_216630 Os_TE_216630 Chr6 10823457 10823456 - MuDR2_OS 6770 0.0264 (76/2877) 0 * Os_TE_216631 Os_TE_216627 Chr6 10822798 10822797 + RETROSAT2LTR 12796 0.0703 (188/2675) 0 * * Os_TE_216626 Chr6 10822521 10822522 + ORSiCMCM00100019 2717 0.0014 (4/2780) 0 * * Os_TE_216585 Chr6 10812555 10812554 + TRUNCATOR 2918 0.0820 (245/2987) 0 * Os_TE_216584 Os_TE_216584 Chr6 10812554 10812555 - TRUNCATOR 2918 0.0820 (245/2988) 0 * Os_TE_216585 Os_TE_216581 Chr6 10809816 10809817 - ORSiTERTOOT00329 5144 0.0013 (4/2993) 0 * Os_TE_216580 Os_TE_216580 Chr6 10809809 10809808 + ORSiTERTOOT00329 5144 0.0013 (4/2993) 0 * Os_TE_216581 Os_TE_216578 Chr6 10807603 10807604 + SC-7_LTR 4431 0.0007 (2/2998) 0 * Os_TE_216577 Os_TE_216577 Chr6 10807599 10807598 - SC-7_LTR 4431 0.0007 (2/2999) 0 * Os_TE_216578 Os_TE_216565 Chr6 10804291 10804292 - LINE-4_OS 3662 0.0712 (212/2976) 0 * * Os_TE_216560 Chr6 10803377 10803378 + ORSiTERTOOT00226 792 0.0741 (221/2983) 0 * Os_TE_216559 Os_TE_216559 Chr6 10803373 10803372 - SZ-22_LTR 4403 0.0741 (221/2981) 0 * Os_TE_216560 Os_TE_216541 Chr6 10800873 10800872 - SZ-62LTR 3649 0.0034 (10/2975) 0 * * Os_TE_216518 Chr6 10791332 10791333 - RETROSAT2LTR 12796 0.0031 (9/2862) 0 * Os_TE_216517 Os_TE_216517 Chr6 10791330 10791329 + RETROSAT2LTR 12796 0.0018 (5/2800) 0 * Os_TE_216518 Os_TE_216507 Chr6 10789160 10789161 - ORSgTETN00200001 10994 0.0007 (2/2903) 0 * Os_TE_216506 Os_TE_216506 Chr6 10789158 10789157 + SPMLIKE 10989 0.0007 (2/2908) 0 * Os_TE_216507 Os_TE_216492 Chr6 10788023 10788024 - COPIA2-LTR_OS 6433 0.0003 (1/2978) 0 * Os_TE_216491 Os_TE_216491 Chr6 10788019 10788018 + COPIA2-LTR_OS 6433 0.0003 (1/2978) 0 * Os_TE_216492 Os_TE_216486 Chr6 10783586 10783587 - ORSgTEMT01600227 232 0.0010 (3/2942) 0 * * Os_TE_216481 Chr6 10781681 10781682 + SPMLIKE 10989 0.0010 (3/2999) 0 * Os_TE_216480 Os_TE_216480 Chr6 10781679 10781678 - ORSgTETN00200001 10994 0.0013 (4/2999) 0 * Os_TE_216481 Os_TE_216469 Chr6 10777857 10777858 + COPIA2-LTR_OS 6433 0.0003 (1/2973) 0 * Os_TE_216468 Os_TE_216468 Chr6 10777853 10777852 - COPIA2-LTR_OS 6433 0.0003 (1/2979) 0 * Os_TE_216469 Os_TE_216466 Chr6 10777440 10777002 + RIREX_LTR 8828 0.6505 (1900/2921) 1 Solo_LTR Os_TE_216464 Os_TE_216464 Chr6 10777002 10777440 - RIRE2_LTR 11306 0.6383 (1853/2903) 1 Solo_LTR Os_TE_216466 Os_TE_216411 Chr6 10761736 10761735 + ATLANTYS-LTR_OS 13740 0.0007 (2/2999) 0 * * Os_TE_216380 Chr6 10749927 10749926 + CASTAWAY-3 314 0.0010 (3/2996) 0 * * Os_TE_216365 Chr6 10741006 10741005 + ORSiTERTOOT00296 5553 0.0003 (1/2992) 0 * * Os_TE_216364 Chr6 10740740 10740741 + ORSiTERTOOT00296 5553 0.0003 (1/2995) 0 * Os_TE_216363 Os_TE_216363 Chr6 10740736 10740735 - SC-3_LTR 5748 0.0003 (1/2995) 0 * Os_TE_216364 Os_TE_216362 Chr6 10740347 10740348 - SC-3_LTR 5748 0.0257 (77/2994) 0 * Os_TE_216361 Os_TE_216361 Chr6 10740343 10740342 + ORSiTERTOOT00296 5553 0.0244 (73/2993) 0 * Os_TE_216362 Os_TE_216360 Chr6 10740030 10740031 + SC-8_LTR 4951 0.0003 (1/2996) 0 * Os_TE_216359 Os_TE_216359 Chr6 10740026 10740025 - SC-8_LTR 4951 0.0003 (1/2994) 0 * Os_TE_216360 Os_TE_216332 Chr6 10731365 10731366 + DS-RICE3N 525 0.0010 (3/2978) 0 * * Os_TE_216324 Chr6 10730510 10730754 + STOWAWAY51_OS 246 0.3727 (1102/2957) 1 Intact * Os_TE_216322 Chr6 10729994 10729993 + STOWAWAY51_OS 246 0.1787 (533/2983) 0 * Os_TE_216321 Os_TE_216321 Chr6 10729988 10729989 + ORSgTEMT01601591 242 0.1768 (527/2981) 0 * Os_TE_216322 Os_TE_216306 Chr6 10723017 10723016 + STOWAWAY51_OS 246 0.0024 (7/2922) 0 * * Os_TE_216286 Chr6 10719894 10719895 + ORSgTEMT01601591 242 0.0003 (1/2990) 0 * * Os_TE_216285 Chr6 10719841 10719842 + RIREX_LTR 8828 0.0067 (20/2987) 0 * Os_TE_216284 Os_TE_216284 Chr6 10719837 10719836 - RIREX_LTR 8828 0.0070 (21/2987) 0 * Os_TE_216285 Os_TE_216282 Chr6 10718976 10714728 + TEMPINDAS 4259 0.3584 (1069/2983) 1 Intact Os_TE_216281 Os_TE_216281 Chr6 10714728 10718976 - TEMPINDAS 4259 0.3619 (1080/2984) 1 Intact Os_TE_216282 Os_TE_216280 Chr6 10712707 10712708 + ORSiTERTOOT00296 5553 0.0023 (7/2994) 0 * Os_TE_216279 Os_TE_216279 Chr6 10712703 10712702 - SC-3_LTR 5748 0.0023 (7/2992) 0 * Os_TE_216280 Os_TE_216275 Chr6 10711276 10711277 + SZ-55_LTR 10318 0.0003 (1/2983) 0 * Os_TE_216274 Os_TE_216274 Chr6 10711272 10711271 - SZ-55_LTR 10318 0.0003 (1/2983) 0 * Os_TE_216275 Os_TE_216273 Chr6 10710891 10710892 + RIREX_LTR 8828 0.0013 (4/2988) 0 * Os_TE_216272 Os_TE_216272 Chr6 10710887 10710886 - RIREX_LTR 8828 0.0013 (4/2987) 0 * Os_TE_216273 Os_TE_216271 Chr6 10710579 10710580 + SZ-50_LTR 11691 0.0003 (1/2981) 0 * Os_TE_216270 Os_TE_216270 Chr6 10710575 10710574 - SZ-50_LTR 11691 0.0003 (1/2985) 0 * Os_TE_216271 Os_TE_216265 Chr6 10708104 10708105 - OSTONOR1_LTR 6440 0.0013 (4/2989) 0 * Os_TE_216264 Os_TE_216264 Chr6 10708100 10708099 + OSTONOR1_LTR 6440 0.0013 (4/2990) 0 * Os_TE_216265 Os_TE_216252 Chr6 10701609 10701610 - NDNA1TNA_OS 334 0.0003 (1/2968) 0 * * Os_TE_216247 Chr6 10700647 10700308 - ORSgTEMT00100578 341 0.7920 (1713/2163) 1 Intact Os_TE_216245 Os_TE_216245 Chr6 10700309 10700644 + NDNA1TNA_OS 334 0.8108 (1736/2141) 1 Intact Os_TE_216247 Os_TE_216240 Chr6 10698838 10698839 + AMYLTP 383 0.0275 (82/2983) 0 * Os_TE_216239 Os_TE_216239 Chr6 10698830 10698829 - AMYLTP 383 0.0281 (84/2986) 0 * Os_TE_216240 Os_TE_216238 Chr6 10698768 10698767 - ORSgTEMT01601208 238 0.0127 (38/2991) 0 * * Os_TE_216235 Chr6 10698516 10698517 - SZ-62LTR 3649 0.0024 (7/2967) 0 * * Os_TE_216233 Chr6 10698098 10698099 + OSTONOR1_LTR 6440 0.0289 (83/2872) 0 * * Os_TE_216230 Chr6 10697370 10697371 + OLO24 345 0.0134 (37/2768) 0 * * Os_TE_216213 Chr6 10694745 10694279 + CLOUD-6 508 0.8550 (2529/2958) 1 Intact * Os_TE_216207 Chr6 10690410 10690409 + ORSgTEMT01601591 242 0.3056 (868/2840) 0 * * Os_TE_216204 Chr6 10690292 10690293 + COPI2_LTR 4733 0.0064 (19/2958) 0 * Os_TE_216203 Os_TE_216203 Chr6 10690288 10690287 - COPI2_LTR 4733 0.0024 (7/2953) 0 * Os_TE_216204 Os_TE_216202 Chr6 10688863 10688552 - ORSgTEMT00101380 341 0.7923 (2353/2970) 1 Intact * Os_TE_216197 Chr6 10688465 10688464 + ORSgTEMT02400034 225 0.2095 (622/2969) 0 * Os_TE_216196 Os_TE_216196 Chr6 10688460 10688461 + ORSgTEMT02400206 225 0.2035 (601/2954) 0 * Os_TE_216197 Os_TE_216184 Chr6 10685515 10685516 - ORSgTEMT01400012 212 0.0017 (5/2869) 0 * * Os_TE_216168 Chr6 10677659 10677658 + SEVERIN-2 1952 0.5044 (1503/2980) 0 * * Os_TE_216162 Chr6 10675839 10675840 + ORSgTETNOOT02316 263 0.0010 (2/2029) 0 * Os_TE_216161 Os_TE_216161 Chr6 10675837 10675836 - INDITTO 263 0.0011 (2/1815) 0 * Os_TE_216162 Os_TE_216160 Chr6 10675714 10675715 + RIRE2_LTR 11306 0.0006 (1/1759) 0 * Os_TE_216159 Os_TE_216159 Chr6 10675710 10675709 - RIRE2_LTR 11306 0.0005 (1/1988) 0 * Os_TE_216160 Os_TE_216136 Chr6 10649237 10649238 + ORSgTEMT00100560 340 0.0004 (1/2484) 0 * * Os_TE_216128 Chr6 10648243 10648242 - OSLINE1-4 4779 0.0959 (246/2564) 0 * * Os_TE_216127 Chr6 10648113 10646793 - CACTA-H 1152 0.4440 (1078/2428) 1 Intact Os_TE_216123 Os_TE_216123 Chr6 10646793 10648113 + CACTA-H 1152 0.4444 (1272/2862) 1 Intact Os_TE_216127 Os_TE_216117 Chr6 10645710 10646037 + NDNA1TNA_OS 334 0.2822 (436/1545) 1 Intact * Os_TE_216116 Chr6 10645698 10645699 + TRUNCATOR2_LTR 2904 0.2763 (794/2874) 0 * * Os_TE_216115 Chr6 10645562 10645563 + RIREX_LTR 8828 0.0756 (216/2858) 0 * Os_TE_216114 Os_TE_216114 Chr6 10645558 10645557 - RIREX_LTR 8828 0.0831 (217/2612) 0 * Os_TE_216115 Os_TE_216113 Chr6 10645551 10645552 + ORSgTEMT01601591 242 0.0046 (13/2839) 0 * * Os_TE_216108 Chr6 10645202 10645439 + ORSgTEMT01602152 236 0.8496 (1666/1961) 1 Intact * Os_TE_216097 Chr6 10643057 10643058 + TNR3 1536 0.5098 (1490/2923) 0 * Os_TE_216096 Os_TE_216096 Chr6 10643055 10643054 - TNR3 1536 0.5502 (1491/2710) 0 * Os_TE_216097 Os_TE_216024 Chr6 10600358 10600357 + ORSiTERTOOT00112 4608 0.0010 (3/2867) 0 * * Os_TE_216002 Chr6 10596021 10596020 + RIREX_LTR 8828 0.1289 (372/2885) 0 * * Os_TE_215997 Chr6 10592097 10592098 + NDNA1TNA_OS 334 0.3246 (841/2591) 0 * Os_TE_215996 Os_TE_215996 Chr6 10592095 10592094 - NDNA1TNA_OS 334 0.2868 (836/2915) 0 * Os_TE_215997 Os_TE_215991 Chr6 10589996 10589997 + COPI2_LTR 4733 0.0003 (1/2946) 0 * * Os_TE_215986 Chr6 10588429 10588430 - ORSiTERTOOT00332 5395 0.0023 (7/2987) 0 * Os_TE_215985 Os_TE_215985 Chr6 10588425 10588424 + ORSiTERTOOT00332 5395 0.0024 (7/2977) 0 * Os_TE_215986 Os_TE_215981 Chr6 10587785 10587784 - Cassandra_OS-LTR 764 0.0175 (52/2976) 0 * * Os_TE_215943 Chr6 10572052 10567619 - SZ-48LTR 3632 0.0561 (157/2797) 1 Intact Os_TE_215941 Os_TE_215941 Chr6 10567619 10572052 + SZ-48LTR 3632 0.0549 (151/2748) 1 Intact Os_TE_215943 Os_TE_215940 Chr6 10567562 10567561 - RETRO2_LTR 12874 0.0186 (49/2637) 0 * * Os_TE_215928 Chr6 10564569 10564570 - MuDR3_OS 8604 0.0740 (219/2960) 0 * Os_TE_215926 Os_TE_215926 Chr6 10564560 10564559 - MuDR2_OS 6770 0.0627 (183/2918) 0 * Os_TE_215928 Os_TE_215906 Chr6 10553788 10553789 + COPI2_LTR 4733 0.0003 (1/2932) 0 * * Os_TE_215904 Chr6 10553310 10553309 + ORSgTEMT01601122 212 0.2021 (587/2904) 0 * * Os_TE_215903 Chr6 10553155 10553156 + NDNA1TNA_OS 334 0.0131 (38/2895) 0 * Os_TE_215902 Os_TE_215902 Chr6 10553153 10553152 - NDNA1TNA_OS 334 0.0148 (43/2908) 0 * Os_TE_215903 Os_TE_215896 Chr6 10552433 10552434 + ORSgTETNOOT01534 208 0.3743 (907/2423) 0 * Os_TE_215895 Os_TE_215895 Chr6 10552430 10552429 - ORSgTETNOOT01534 208 0.3724 (900/2417) 0 * Os_TE_215896 Os_TE_215892 Chr6 10550027 10550026 - ORSiCMCM00100013 9728 0.2116 (623/2944) 0 * * Os_TE_215887 Chr6 10548630 10495669 - MDM2 312 0.6379 (1515/2375) 1 Intact Os_TE_215827 Os_TE_215827 Chr6 10495661 10548639 - OSTE21 1271 0.5996 (1273/2123) 1 Intact Os_TE_215887 Os_TE_215804 Chr6 10489275 10489276 + ORSgTEMT01601122 212 0.3123 (684/2190) 0 * * Os_TE_215796 Chr6 10488170 10488171 - INDITTO 263 0.3764 (903/2399) 0 * * Os_TE_215793 Chr6 10487167 10487305 - ORSgTEMT00502293 151 0.6500 (1482/2280) 1 Intact * Os_TE_215790 Chr6 10487052 10486810 - ORSgTEMT01400022 212 0.5471 (1272/2325) 1 Intact * Os_TE_215786 Chr6 10486353 10486354 - RETROSAT2LTR 12796 0.0027 (8/2977) 0 * * Os_TE_215785 Chr6 10486325 10486326 - COPIA2-LTR_OS 6433 0.0003 (1/2971) 0 * Os_TE_215784 Os_TE_215784 Chr6 10486321 10486320 + COPIA2-LTR_OS 6433 0.0003 (1/2912) 0 * Os_TE_215785 Os_TE_215783 Chr6 10486306 10486305 - GAIJIN 147 0.0003 (1/2934) 0 * * Os_TE_215781 Chr6 10486250 10486249 - ORSgTETNOOT01930 140 0.2981 (885/2969) 0 * * Os_TE_215780 Chr6 10485879 10485880 + STOWAWAY1_OS 149 0.0103 (14/1354) 0 * Os_TE_215779 Os_TE_215779 Chr6 10485878 10485877 + STOWAWAY1_OS 149 0.2158 (635/2943) 0 * Os_TE_215780 Os_TE_215770 Chr6 10481162 10480924 + ORSgTEMT01600628 237 0.4982 (1408/2826) 1 Intact Os_TE_215769 Os_TE_215769 Chr6 10480924 10481160 + ORSgTEMT01601592 239 0.4889 (1371/2804) 1 Intact Os_TE_215770 Os_TE_215768 Chr6 10480909 10480910 - NDNA1TNA_OS 334 0.0035 (10/2848) 0 * * Os_TE_215761 Chr6 10479130 10479131 - SETARIA1 1293 0.0005 (1/2074) 0 * * Os_TE_215760 Chr6 10479122 10479121 + SETARIA1 1293 0.2238 (627/2802) 0 * * Os_TE_215756 Chr6 10478269 10478270 + INDITTO 263 0.0036 (7/1970) 0 * Os_TE_215755 Os_TE_215755 Chr6 10478267 10478266 - INDITTO 263 0.0066 (9/1370) 0 * Os_TE_215756 Os_TE_215739 Chr6 10474747 10474748 + ORSgTETNOOT00792 273 0.0003 (1/2975) 0 * * Os_TE_215735 Chr6 10474163 10474164 - HATOS1 3488 0.0349 (74/2121) 0 * * Os_TE_215732 Chr6 10473869 10473868 + CACTA-H 1152 0.0229 (46/2006) 0 * * Os_TE_215715 Chr6 10465472 10465473 - DNAUN1_OS 408 0.0008 (1/1188) 0 * * Os_TE_215707 Chr6 10463664 10463663 + NDNA1TNA_OS 334 0.0165 (20/1209) 0 * * Os_TE_215699 Chr6 10461915 10461914 + RETROSAT2LTRA 3112 0.0507 (115/2270) 0 * * Os_TE_215697 Chr6 10461412 10461413 + RIREX_LTR 8828 0.1249 (367/2938) 0 * * Os_TE_215696 Chr6 10461088 10461087 - ORSgTEMT02600002 356 0.3593 (1050/2922) 0 * Os_TE_215695 Os_TE_215695 Chr6 10461085 10461086 - ORSgTEMT00101174 225 0.3406 (974/2860) 0 * Os_TE_215696 Os_TE_215689 Chr6 10459402 10459401 - Cassandra_OS-LTR 764 0.0037 (10/2710) 0 * * Os_TE_215672 Chr6 10454313 10454312 + RETRO2A_LTR 12895 0.0965 (49/508) 0 * * Os_TE_215659 Chr6 10447121 10446782 + ORSgTEMT00101674 340 0.1306 (276/2114) 1 Intact Os_TE_215655 Os_TE_215655 Chr6 10446785 10447118 + NDNA1TNA_OS 334 0.2455 (288/1173) 1 Intact Os_TE_215659 Os_TE_215651 Chr6 10446476 10446475 + COPIA1-LTR_OS 9292 0.0005 (1/2105) 0 * * Os_TE_215646 Chr6 10444776 10444360 + ORSgTEMT00300093 396 0.7770 (1554/2000) 1 Intact Os_TE_215643 Os_TE_215643 Chr6 10444354 10444763 + ORSgTEMT00300069 394 0.7695 (1469/1909) -1 Intact Os_TE_215646 Os_TE_215628 Chr6 10441831 10441978 - STOWAWAY46_OS 154 0.8824 (1995/2261) 1 Intact * Os_TE_215627 Chr6 10438968 10438967 + ORSgTEMT01601591 242 0.0561 (164/2924) 0 * Os_TE_215626 Os_TE_215626 Chr6 10438962 10438963 + STOWAWAY51_OS 246 0.0545 (160/2935) 0 * Os_TE_215627 Os_TE_215617 Chr6 10436513 10436514 - SZ-55_LTR 10318 0.0014 (4/2936) 0 * Os_TE_215616 Os_TE_215616 Chr6 10436509 10436508 + SZ-55_LTR 10318 0.0014 (4/2911) 0 * Os_TE_215617 Os_TE_215605 Chr6 10433367 10433366 - ENSPM4_OS 11610 0.0567 (168/2961) 0 * * Os_TE_215604 Chr6 10433217 10433216 - COPIA2-LTR_OS 6433 0.0003 (1/2959) 0 * * Os_TE_215595 Chr6 10428264 10428263 - COPI2_LTR 4733 0.0003 (1/2949) 0 * * Os_TE_215590 Chr6 10424905 10424906 + TRUNCATOR2_LTR 2904 0.0180 (53/2952) 0 * Os_TE_215589 Os_TE_215589 Chr6 10424901 10424900 - TRUNCATOR2_LTR 2904 0.0197 (58/2951) 0 * Os_TE_215590 Os_TE_215581 Chr6 10419394 10419395 - INDITTO 263 0.2261 (603/2667) 0 * * Os_TE_215569 Chr6 10417896 10418124 - STOWAWAY43_OS 233 0.8682 (1911/2201) 1 Intact * Os_TE_215559 Chr6 10415926 10415927 - TRUNCATOR 2918 0.0021 (4/1913) 0 * * Os_TE_215540 Chr6 10406819 10406820 - RETRO1_LTR 8314 0.0019 (5/2677) 0 * * Os_TE_215536 Chr6 10406192 10406191 - ORSiTETNOOT00107 906 0.0034 (9/2677) 0 * Os_TE_215535 Os_TE_215535 Chr6 10406177 10406178 + ORSiTETNOOT00107 906 0.0034 (9/2673) 0 * Os_TE_215536 Os_TE_215534 Chr6 10405853 10405854 + INDITTO 263 0.0093 (25/2677) 0 * Os_TE_215533 Os_TE_215533 Chr6 10405851 10405850 - INDITTO 263 0.0093 (25/2676) 0 * Os_TE_215534 Os_TE_215525 Chr6 10403604 10403603 + COPIA1-LTR_OS 9292 0.4970 (978/1968) 0 * * Os_TE_215524 Chr6 10402543 10402544 - TYPEM 227 0.0037 (7/1899) 0 * Os_TE_215523 Os_TE_215523 Chr6 10402542 10402541 - ORSgTEMT02400179 221 0.0037 (7/1909) 0 * Os_TE_215524 Os_TE_215516 Chr6 10400453 10400452 + ENSPM4_OS 11610 0.0010 (2/1907) 0 * * Os_TE_215510 Chr6 10399569 10399568 + ORSgTEMT01601591 242 0.0937 (207/2209) 0 * * Os_TE_215505 Chr6 10398104 10397730 + BUHUI 375 0.5298 (997/1882) 1 Intact Os_TE_215503 Os_TE_215503 Chr6 10397730 10398104 - BUHUI 375 0.5345 (1008/1886) 1 Intact Os_TE_215505 Os_TE_215502 Chr6 10396923 10396260 + ORSiTETN00100018 738 0.8472 (1885/2225) 1 Intact * Os_TE_215495 Chr6 10394694 10394693 - GYPSY-A_LTR 8951 0.0047 (8/1686) 0 * * Os_TE_215488 Chr6 10390994 10390995 - SZ-48LTR 3632 0.0035 (8/2273) 0 * Os_TE_215487 Os_TE_215487 Chr6 10390990 10390989 + SZ-48LTR 3632 0.0040 (9/2250) 0 * Os_TE_215488 Os_TE_215482 Chr6 10385644 10385645 + MIDWAY 985 0.0159 (47/2960) 0 * * Os_TE_215474 Chr6 10381942 10381943 + F569 228 0.0244 (73/2986) 0 * Os_TE_215473 Os_TE_215473 Chr6 10381940 10381939 - F569 228 0.0238 (71/2987) 0 * Os_TE_215474 Os_TE_215471 Chr6 10381745 10381746 - ORSgTEMT00900145 249 0.1223 (365/2985) 0 * Os_TE_215470 Os_TE_215470 Chr6 10381744 10381743 + ORSgTEMT00901844 250 0.1227 (363/2959) 0 * Os_TE_215471 Os_TE_215452 Chr6 10371877 10371878 - OLO24 345 0.0015 (4/2658) 0 * * Os_TE_215427 Chr6 10367202 10367203 - COPI2_LTR 4733 0.0014 (4/2950) 0 * Os_TE_215426 Os_TE_215426 Chr6 10367198 10367197 + COPI2_LTR 4733 0.0010 (3/2960) 0 * Os_TE_215427 Os_TE_215424 Chr6 10366376 10366377 + ENSPM4_OS 11610 0.0322 (96/2984) 0 * * Os_TE_215422 Chr6 10366031 10366032 + RETRO2_LTR 12874 0.0803 (239/2978) 0 * * Os_TE_215420 Chr6 10365419 10365420 + ORSiCMCM00100019 2717 0.0250 (72/2876) 0 * Os_TE_215419 Os_TE_215419 Chr6 10365415 10365414 - TRUNCATOR2_LTR 2904 0.0257 (75/2918) 0 * Os_TE_215420 Os_TE_215408 Chr6 10363776 10363775 - AMYLTP 383 0.0104 (31/2971) 0 * Os_TE_215407 Os_TE_215407 Chr6 10363754 10363755 + ORSgTEMT00800058 376 0.0101 (30/2980) 0 * Os_TE_215408 Os_TE_215406 Chr6 10363662 10363661 - OSTE21 1271 0.0003 (1/2976) 0 * Os_TE_215405 Os_TE_215405 Chr6 10363654 10363655 - OSTE21 1271 0.0003 (1/2952) 0 * Os_TE_215406 Os_TE_215404 Chr6 10363379 10363380 - NDNA1TNA_OS 334 0.0010 (3/2918) 0 * Os_TE_215403 Os_TE_215403 Chr6 10363377 10363376 + NDNA1TNA_OS 334 0.0014 (4/2914) 0 * Os_TE_215404 Os_TE_215396 Chr6 10361079 10361078 + STOWAWAY9_OS 235 0.0003 (1/2962) 0 * * Os_TE_215391 Chr6 10360346 10360347 - MPING 430 0.0003 (1/2934) 0 * Os_TE_215390 Os_TE_215390 Chr6 10360344 10360343 + MPING 430 0.0003 (1/2938) 0 * Os_TE_215391 Os_TE_215389 Chr6 10359374 10359375 - RIREX_LTR 8828 0.0355 (100/2819) 0 * Os_TE_215388 Os_TE_215388 Chr6 10359370 10359369 + RIREX_LTR 8828 0.0332 (98/2955) 0 * Os_TE_215389 Os_TE_215387 Chr6 10359353 10359354 + ORSgTETNOOT00908 242 0.7341 (2187/2979) 0 * * Os_TE_215383 Chr6 10358704 10358703 - TYPEM 227 0.0107 (31/2907) 0 * Os_TE_215382 Os_TE_215382 Chr6 10358703 10358704 - ORSgTEMT02400246 177 0.0099 (29/2925) 0 * Os_TE_215383 Os_TE_215380 Chr6 10355775 10355776 - TYPEM 227 0.0332 (99/2985) 0 * Os_TE_215379 Os_TE_215379 Chr6 10355774 10355773 - ORSgTEMT02400179 221 0.0319 (95/2980) 0 * Os_TE_215380 Os_TE_215376 Chr6 10352599 10352600 - SC-8_LTR 4951 0.0003 (1/2970) 0 * Os_TE_215375 Os_TE_215375 Chr6 10352595 10352594 + ORSiTERTOOT00381 4988 0.0003 (1/2977) 0 * Os_TE_215376 Os_TE_215366 Chr6 10347397 10347398 + ORSgTEMT00501795 147 0.0003 (1/2972) 0 * * Os_TE_215310 Chr6 10287153 10287154 - NDNA1TNA_OS 334 0.0024 (7/2978) 0 * Os_TE_215309 Os_TE_215309 Chr6 10287151 10287150 + NDNA1TNA_OS 334 0.0020 (6/2986) 0 * Os_TE_215310 Os_TE_215293 Chr6 10281095 10281096 - ORSgTETN00200001 10994 0.0018 (5/2847) 0 * Os_TE_215292 Os_TE_215292 Chr6 10281093 10281092 + SPMLIKE 10989 0.0021 (6/2838) 0 * Os_TE_215293 Os_TE_215288 Chr6 10280135 10280136 - RIRE2_LTR 11306 0.0748 (215/2876) 0 * Os_TE_215287 Os_TE_215287 Chr6 10280131 10280130 + RIRE2_LTR 11306 0.0797 (230/2886) 0 * Os_TE_215288 Os_TE_215286 Chr6 10279910 10279911 + RIREX_LTR 8828 0.0014 (4/2794) 0 * Os_TE_215285 Os_TE_215285 Chr6 10279906 10279905 - RIREX_LTR 8828 0.0014 (4/2882) 0 * Os_TE_215286 Os_TE_215283 Chr6 10279890 10279889 - RIRE2_LTR 11306 0.0756 (218/2882) 0 * * Os_TE_215281 Chr6 10279680 10279679 + ENSPM4_OS 11610 0.0098 (28/2847) 0 * * Os_TE_215255 Chr6 10269900 10270135 + STOWAWAY21_OS 243 0.3586 (1066/2973) 1 Intact * Os_TE_215253 Chr6 10269685 10269686 + RIREX_LTR 8828 0.0013 (4/2974) 0 * * Os_TE_215222 Chr6 10214719 10269267 - RIRE3A_LTR 10580 0.3682 (810/2200) 1 Intact * Os_TE_215221 Chr6 10213726 10213727 - GYPSY-A_LTR 8951 0.0241 (72/2983) 0 * Os_TE_215220 Os_TE_215220 Chr6 10213722 10213721 + SZ-40LTR 2465 0.0238 (71/2981) 0 * Os_TE_215221 Os_TE_215209 Chr6 10213279 10213280 - ORSgTETN00200001 10994 0.0027 (8/2937) 0 * Os_TE_215208 Os_TE_215208 Chr6 10213277 10213276 + SPMLIKE 10989 0.0027 (8/2988) 0 * Os_TE_215209 Os_TE_215207 Chr6 10212871 10212872 - ENSPM5_OS 9581 0.0221 (65/2938) 0 * Os_TE_215206 Os_TE_215206 Chr6 10212869 10212868 + ENSPM5_OS 9581 0.0252 (74/2939) 0 * Os_TE_215207 Os_TE_215194 Chr6 10205417 10210528 - SZ-62LTR 3649 0.2922 (866/2964) 0.71 Intact * Os_TE_215187 Chr6 10203508 10203509 - COPI2_LTR 4733 0.0003 (1/2986) 0 * Os_TE_215186 Os_TE_215186 Chr6 10203504 10203503 + COPI2_LTR 4733 0.0003 (1/2986) 0 * Os_TE_215187 Os_TE_215177 Chr6 10199635 10199636 - ENSPM3_OS 10837 0.0017 (5/2940) 0 * Os_TE_215176 Os_TE_215176 Chr6 10199633 10199632 + ENSPM3_OS 10837 0.0007 (2/2924) 0 * Os_TE_215177 Os_TE_215173 Chr6 10198515 10198663 + ORSgTEMT00500476 150 0.7823 (2163/2765) 1 Intact * Os_TE_215161 Chr6 10192026 10192027 + CACTA-L 1162 0.0017 (5/2972) 0 * * Os_TE_215155 Chr6 10186715 10186714 + EnSpm-13_OS 11171 0.0276 (82/2970) 0 * * Os_TE_215152 Chr6 10185621 10185622 + ORSgTEMT00600124 361 0.0017 (5/2990) 0 * * Os_TE_215145 Chr6 10182019 10182020 - SZ-35LTR 3853 0.1089 (322/2958) 0 * Os_TE_215144 Os_TE_215144 Chr6 10182015 10182014 + RETROSAT4_LTR 13504 0.1004 (294/2929) 0 * Os_TE_215145 Os_TE_215040 Chr6 10144114 10144113 - SZ-22_LTR 4403 0.0044 (13/2986) 0 * * Os_TE_215039 Chr6 10144069 10144068 - STOWAWAY11_OS 292 0.0023 (7/2981) 0 * * Os_TE_215038 Chr6 10144063 10144064 + MPING 430 0.0003 (1/2859) 0 * Os_TE_215037 Os_TE_215037 Chr6 10144061 10144060 - MPING 430 0.0003 (1/2980) 0 * Os_TE_215038 Os_TE_215036 Chr6 10143987 10143724 + ORSgTETNOOT01221 263 0.2856 (830/2906) 1 Intact * Os_TE_215027 Chr6 10143292 10143293 + INDITTO 263 0.4392 (1290/2937) 0 * * Os_TE_215022 Chr6 10143179 10143178 + MPING 430 0.0004 (1/2518) 0 * * Os_TE_215015 Chr6 10142276 10142277 - RIREX_LTR 8828 0.0034 (10/2915) 0 * Os_TE_215014 Os_TE_215014 Chr6 10142272 10142271 + RIREX_LTR 8828 0.0034 (10/2916) 0 * Os_TE_215015 Os_TE_215009 Chr6 10141792 10141793 - ENSPM6_OS 9815 0.0037 (11/2960) 0 * Os_TE_215008 Os_TE_215008 Chr6 10141789 10141788 + ENSPM6_OS 9815 0.0037 (11/2967) 0 * Os_TE_215009 Os_TE_215007 Chr6 10141524 10141525 + ORSiTERTOOT00027 10853 0.0967 (282/2915) 0 * * Os_TE_215005 Chr6 10141392 10141393 - ORSgTETN00200001 10994 0.0966 (282/2920) 0 * Os_TE_215004 Os_TE_215004 Chr6 10141390 10141389 + SPMLIKE 10989 0.1138 (317/2785) 0 * Os_TE_215005 Os_TE_215003 Chr6 10141024 10141025 + ORSiTERTOOT00074 4935 0.0114 (34/2978) 0 * Os_TE_215002 Os_TE_215002 Chr6 10141020 10141019 - ORSiTERTOOT00074 4935 0.0121 (36/2979) 0 * Os_TE_215003 Os_TE_215000 Chr6 10140205 10140206 + RETROSAT4_LTR 13504 0.0324 (97/2996) 0 * * Os_TE_214982 Chr6 10136240 10136239 + TRUNCATOR 2918 0.0031 (9/2928) 0 * Os_TE_214981 Os_TE_214981 Chr6 10136239 10136240 - TRUNCATOR 2918 0.0031 (9/2923) 0 * Os_TE_214982 Os_TE_214977 Chr6 10135197 10135196 + TRUNCATOR 2918 0.0663 (187/2822) 0 * * Os_TE_214963 Chr6 10128846 10128847 - RETROSAT3_LTR 11537 0.0144 (31/2158) 0 * * Os_TE_214938 Chr6 10119216 10119217 + COPI2_LTR 4733 0.0332 (97/2921) 0 * Os_TE_214937 Os_TE_214937 Chr6 10119212 10119211 - COPI2_LTR 4733 0.0422 (124/2939) 0 * Os_TE_214938 Os_TE_214930 Chr6 10118344 10118345 + TELIA 141 0.0003 (1/2989) 0 * * Os_TE_214928 Chr6 10118308 10118309 + MDR2 6967 0.0651 (195/2995) 0 * Os_TE_214927 Os_TE_214927 Chr6 10118299 10118298 - MDR2 6967 0.0635 (190/2994) 0 * Os_TE_214928 Os_TE_214908 Chr6 10114519 10114520 - NDNA1TNA_OS 334 0.0651 (191/2935) 0 * * Os_TE_214900 Chr6 10111754 10112279 + MuDR4_OS 7610 0.0685 (205/2994) 1 Intact * Os_TE_214895 Chr6 10110992 10110752 - ORSgTETNOOT00908 242 0.0575 (172/2991) 1 Intact Os_TE_214894 Os_TE_214894 Chr6 10110752 10110992 + ORSgTETNOOT00908 242 0.0598 (170/2841) 1 Intact Os_TE_214895 Os_TE_214888 Chr6 10109132 10109131 + SPMLIKE 10989 0.0630 (188/2983) 0 * * Os_TE_214855 Chr6 10098425 10098426 + HARB-1_OS 5166 0.0007 (2/2990) 0 * Os_TE_214854 Os_TE_214854 Chr6 10098423 10098422 - HARB-1_OS 5166 0.0007 (2/2991) 0 * Os_TE_214855 Os_TE_214853 Chr6 10098058 10098057 + ORSgTEMT01601591 242 0.0020 (6/2993) 0 * Os_TE_214852 Os_TE_214852 Chr6 10098055 10098056 + ORSgTEMT01601591 242 0.0020 (6/2995) 0 * Os_TE_214853 Os_TE_214846 Chr6 10095625 10095626 - CLOUD 734 0.1982 (589/2972) 0 * * Os_TE_214837 Chr6 10092061 10092060 + ORSgTETNOOT01219 231 0.0007 (2/2989) 0 * * Os_TE_214836 Chr6 10092037 10092038 + ORSgTETNOOT00908 242 0.2261 (675/2985) 0 * Os_TE_214835 Os_TE_214835 Chr6 10092033 10092032 + ORSgTETNOOT01219 231 0.2244 (669/2981) 0 * Os_TE_214836 Os_TE_214809 Chr6 10088378 10088377 - OSTE20 496 0.0003 (1/2896) 0 * * Os_TE_214784 Chr6 10079117 10079118 + RETRO2A_LTR 12895 0.0094 (28/2988) 0 * * Os_TE_214781 Chr6 10078397 10078398 - OSTE33 1012 0.0017 (5/2959) 0 * Os_TE_214780 Os_TE_214780 Chr6 10078388 10078387 - OSTE33 1012 0.0017 (5/2955) 0 * Os_TE_214781 Os_TE_214730 Chr6 10049884 10049885 + RIREX_LTR 8828 0.0003 (1/2931) 0 * Os_TE_214729 Os_TE_214729 Chr6 10049880 10049879 - RIREX_LTR 8828 0.0003 (1/2914) 0 * Os_TE_214730 Os_TE_214716 Chr6 10033955 10033956 - AMYLTP 383 0.2330 (598/2567) 0 * Os_TE_214715 Os_TE_214715 Chr6 10033947 10033946 + AMYLTP 383 0.2062 (581/2818) 0 * Os_TE_214716 Os_TE_214712 Chr6 10033738 10033739 - SZ-9LTR 965 0.2569 (757/2947) 0 * Os_TE_214711 Os_TE_214711 Chr6 10033734 10033733 + RIRE5-LTR_OS 6427 0.2322 (667/2872) 0 * Os_TE_214712 Os_TE_214702 Chr6 10030816 10030817 - ORSiTERTOOT00074 4935 0.0271 (81/2992) 0 * * Os_TE_214665 Chr6 10013641 10013642 + NDNA1TNA_OS 334 0.0304 (91/2998) 0 * Os_TE_214664 Os_TE_214664 Chr6 10013639 10013638 - NDNA1TNA_OS 334 0.0294 (88/2998) 0 * Os_TE_214665 Os_TE_214654 Chr6 10001319 10001320 + SPMLIKE 10989 0.0224 (67/2989) 0 * Os_TE_214653 Os_TE_214653 Chr6 10001317 10001316 - ORSgTETN00200001 10994 0.0198 (59/2984) 0 * Os_TE_214654 Os_TE_214636 Chr6 9998841 9998842 - ORSgTERT00201216 11284 0.0027 (8/2922) 0 * Os_TE_214635 Os_TE_214635 Chr6 9998837 9998836 - RIRE2_LTR 11306 0.0024 (7/2900) 0 * Os_TE_214636 Os_TE_214630 Chr6 9998518 9998519 - ORSgTEMT02000063 217 0.0270 (79/2927) 0 * * Os_TE_214627 Chr6 9998320 9998319 + COPIA2-LTR_OS 6433 0.0018 (5/2845) 0 * * Os_TE_214611 Chr6 9993438 9993439 + SPMLIKE 10989 0.0003 (1/2866) 0 * Os_TE_214610 Os_TE_214610 Chr6 9993436 9993435 - SPMLIKE 10989 0.0004 (1/2843) 0 * Os_TE_214611 Os_TE_214608 Chr6 9989993 9990234 - STOWAWAY51_OS 246 0.0592 (177/2991) 1 Intact * Os_TE_214606 Chr6 9989474 9979607 - ENSPM5_OS 9581 0.0576 (170/2949) 1 Intact Os_TE_214604 Os_TE_214604 Chr6 9979607 9989474 + ENSPM5_OS 9581 0.0513 (150/2925) 1 Intact Os_TE_214606 Os_TE_214601 Chr6 9979461 9979460 + RIREX_LTR 8828 0.0031 (9/2939) 0 * * Os_TE_214600 Chr6 9979031 9979032 + INDITTO 263 0.0010 (3/2929) 0 * * Os_TE_214590 Chr6 9978088 9978089 + ORSgTEMT00101674 340 0.0571 (169/2962) 0 * * Os_TE_214587 Chr6 9977629 9977628 - RIREX_LTR 8828 0.2778 (826/2973) 0 * * Os_TE_214586 Chr6 9977275 9977274 - STOWAWAY51_OS 246 0.0003 (1/2981) 0 * Os_TE_214585 Os_TE_214585 Chr6 9977272 9977273 - STOWAWAY51_OS 246 0.0003 (1/2984) 0 * Os_TE_214586 Os_TE_214584 Chr6 9977190 9977189 + RIREX_LTR 8828 0.0262 (78/2978) 0 * * Os_TE_214578 Chr6 9974475 9974474 - ENSPM5_OS 9581 0.0033 (9/2693) 0 * * Os_TE_214525 Chr6 9927954 9927953 - AMYLTP 383 0.0058 (17/2952) 0 * * Os_TE_214518 Chr6 9926632 9926633 - RIRE2_LTR 11306 0.0040 (12/2984) 0 * * Os_TE_214477 Chr6 9910507 9910508 - RIREX_LTR 8828 0.0027 (8/2984) 0 * Os_TE_214476 Os_TE_214476 Chr6 9910503 9910502 + RIREX_LTR 8828 0.0023 (7/2992) 0 * Os_TE_214477 Os_TE_214430 Chr6 9902248 9902247 - RETROSAT2LTR 12796 0.1133 (336/2966) 0 * * Os_TE_214398 Chr6 9888209 9888208 + ORSgTEMT01601591 242 0.0103 (31/2996) 0 * Os_TE_214397 Os_TE_214397 Chr6 9888203 9888204 + STOWAWAY51_OS 246 0.0090 (27/2994) 0 * Os_TE_214398 Os_TE_214396 Chr6 9888130 9888131 + MuDR3_OS 8604 0.0010 (3/2941) 0 * Os_TE_214395 Os_TE_214395 Chr6 9888122 9888121 - MuDR3_OS 8604 0.0013 (4/2991) 0 * Os_TE_214396 Os_TE_214365 Chr6 9874368 9887519 - RETRO1_LTR 8314 0.0640 (181/2827) 1 Intact * Os_TE_214364 Chr6 9874351 9874352 + CACTA-M 1129 0.0526 (156/2967) 0 * * Os_TE_214362 Chr6 9873763 9873764 + RETRO2_LTR 12874 0.1919 (572/2980) 0 * Os_TE_214361 Os_TE_214361 Chr6 9873759 9873758 - RETRO2_LTR 12874 0.1953 (584/2991) 0 * Os_TE_214362 Os_TE_214360 Chr6 9873615 9873616 + ORSiTERTOOT00396 5939 0.0017 (5/2964) 0 * Os_TE_214359 Os_TE_214359 Chr6 9873611 9873610 - ORSiTERTOOT00396 5939 0.0013 (4/2971) 0 * Os_TE_214360 Os_TE_214350 Chr6 9872554 9872555 + RIREX_LTR 8828 0.0014 (4/2943) 0 * Os_TE_214349 Os_TE_214349 Chr6 9872550 9872549 - RIREX_LTR 8828 0.0010 (3/2936) 0 * Os_TE_214350 Os_TE_214347 Chr6 9870894 9870893 - ORSiTERTOOT00023 5086 0.0012 (3/2573) 0 * * Os_TE_214343 Chr6 9869580 9869581 + RETROSAT4_LTR 13504 0.0041 (12/2957) 0 * Os_TE_214342 Os_TE_214342 Chr6 9869576 9869575 - SZ-35LTR 3853 0.0037 (11/2961) 0 * Os_TE_214343 Os_TE_214341 Chr6 9869304 9869305 + RETRO2A_LTR 12895 0.1106 (331/2994) 0 * * Os_TE_214335 Chr6 9868844 9868843 - MERMITE18E 1528 0.0007 (2/2990) 0 * * Os_TE_214334 Chr6 9868576 9868577 - ORSgTERT00201216 11284 0.0064 (19/2983) 0 * Os_TE_214333 Os_TE_214333 Chr6 9868572 9868571 - RIRE2_LTR 11306 0.0064 (19/2977) 0 * Os_TE_214334 Os_TE_214332 Chr6 9868370 9868369 + ORSgTETN00200005 1121 0.2794 (783/2802) 0 * Os_TE_214331 Os_TE_214331 Chr6 9868369 9868370 + CACTA-H 1152 0.2830 (840/2968) 0 * Os_TE_214332 Os_TE_214321 Chr6 9865758 9865757 + ORSgTEMT00500201 140 0.0010 (3/2961) 0 * * Os_TE_214314 Chr6 9863782 9863781 - STOWAWAY44_OS 240 0.0007 (2/2993) 0 * * Os_TE_214312 Chr6 9862350 9862349 + COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * * Os_TE_214309 Chr6 9861490 9861491 - TRUNCATOR2_LTR 2904 0.4632 (862/1861) 0 * Os_TE_214308 Os_TE_214308 Chr6 9861486 9861485 + ORSiCMCM00100019 2717 0.2963 (883/2980) 0 * Os_TE_214309 Os_TE_214306 Chr6 9861224 9861223 + OSTE33 1012 0.0015 (4/2673) 0 * * Os_TE_214293 Chr6 9857590 9857589 + TRUNCATOR 2918 0.0054 (16/2946) 0 * * Os_TE_214291 Chr6 9857142 9857143 - MuDR2_OS 6770 0.0051 (15/2930) 0 * Os_TE_214290 Os_TE_214290 Chr6 9857133 9857132 + MuDR2_OS 6770 0.0054 (16/2961) 0 * Os_TE_214291 Os_TE_214246 Chr6 9837177 9837176 - SZ-48LTR 3632 0.2036 (603/2962) 0 * * Os_TE_214229 Chr6 9832086 9832087 + NDNA1TNA_OS 334 0.0003 (1/2975) 0 * * Os_TE_214225 Chr6 9831349 9831350 - RETROSAT4_LTR 13504 0.0566 (169/2984) 0 * * Os_TE_214222 Chr6 9830983 9830984 + TRUNCATOR 2918 0.0007 (2/2990) 0 * * Os_TE_214177 Chr6 9809319 9809318 - OSTE20 496 0.0018 (5/2767) 0 * * Os_TE_214165 Chr6 9807778 9807777 + TRUNCATOR2_LTR 2904 0.0003 (1/2984) 0 * * Os_TE_214147 Chr6 9802289 9778433 - ORSgTETN00200001 10994 0.0143 (32/2231) -1 Intact Os_TE_214127 Os_TE_214127 Chr6 9778434 9802289 + SPMLIKE 10989 0.0766 (182/2377) 1 Intact Os_TE_214147 Os_TE_214123 Chr6 9777020 9777019 + NDNA1TNA_OS 334 0.3075 (912/2966) 0 * Os_TE_214122 Os_TE_214122 Chr6 9776994 9776995 - NDNA1TNA_OS 334 0.3091 (915/2960) 0 * Os_TE_214123 Os_TE_214120 Chr6 9776969 9776970 + STOWAWAY21_OS 243 0.0060 (18/2976) 0 * * Os_TE_214112 Chr6 9773715 9773379 - ORSgTEMT01900052 340 0.1839 (192/1044) 1 Intact * Os_TE_214099 Chr6 9750364 9750363 - ORSiTERTOOT00385 6000 0.0066 (6/913) 0 * * Os_TE_214075 Chr6 9737751 9737752 + ORSgTEMT00501795 147 0.0152 (3/197) 0 * * Os_TE_214027 Chr6 9707378 9707377 - STOWAWAY9_OS 235 0.0254 (5/197) 0 * * Os_TE_214022 Chr6 9704917 9704918 - ENSPM3_OS 10837 0.0239 (5/209) 0 * Os_TE_214021 Os_TE_214021 Chr6 9704915 9704914 - TNR3 1536 0.0200 (4/200) 0 * Os_TE_214022 Os_TE_214017 Chr6 9702465 9702464 + OSTE21 1271 0.2962 (848/2863) 0 * * Os_TE_214015 Chr6 9702038 9702037 - TRUNCATOR2_LTR 2904 0.0147 (43/2933) 0 * * Os_TE_214014 Chr6 9701793 9701794 - SZ-5LTR 1223 0.0017 (5/2926) 0 * Os_TE_214013 Os_TE_214013 Chr6 9701789 9701788 + COPIA1-LTR_OS 9292 0.0017 (5/2935) 0 * Os_TE_214014 Os_TE_214011 Chr6 9701126 9701125 + ORSgTEMT01602188 240 0.0017 (5/2914) 0 * Os_TE_214010 Os_TE_214010 Chr6 9701123 9701124 + ORSgTEMT01602250 243 0.0017 (5/2935) 0 * Os_TE_214011 Os_TE_214007 Chr6 9700284 9700283 + OSTONOR1_LTR 6440 0.0003 (1/2935) 0 * * Os_TE_214001 Chr6 9698420 9698419 - ENSPM4_OS 11610 0.0052 (15/2858) 0 * * Os_TE_213992 Chr6 9694844 9694845 - TESS 244 0.0024 (7/2926) 0 * Os_TE_213991 Os_TE_213991 Chr6 9694837 9694836 + TESS 244 0.0024 (7/2922) 0 * Os_TE_213992 Os_TE_213990 Chr6 9694791 9694790 - COWARD 200 0.0010 (3/2917) 0 * * Os_TE_213987 Chr6 9692960 9692961 - COPIA2-LTR_OS 6433 0.0003 (1/2968) 0 * Os_TE_213986 Os_TE_213986 Chr6 9692956 9692955 + COPIA2-LTR_OS 6433 0.0003 (1/2969) 0 * Os_TE_213987 Os_TE_213981 Chr6 9691813 9691814 + ENSPM4_OS 11610 0.0044 (13/2961) 0 * * Os_TE_213978 Chr6 9691080 9691317 + ORSgTEMT01601983 238 0.4343 (899/2070) 1 Intact * Os_TE_213976 Chr6 9690811 9690812 + NDNA1TNA_OS 334 0.0010 (2/2085) 0 * Os_TE_213975 Os_TE_213975 Chr6 9690809 9690808 - NDNA1TNA_OS 334 0.0010 (2/2081) 0 * Os_TE_213976 Os_TE_213970 Chr6 9689363 9689362 + ORSgTEMT00501795 147 0.0009 (2/2246) 0 * * Os_TE_213964 Chr6 9686969 9686970 - ORSgTETN00200001 10994 0.0003 (1/2984) 0 * Os_TE_213963 Os_TE_213963 Chr6 9686967 9686966 + SPMLIKE 10989 0.0003 (1/2985) 0 * Os_TE_213964 Os_TE_213962 Chr6 9686490 9686491 - RIREX_LTR 8828 0.0057 (17/2978) 0 * * Os_TE_213957 Chr6 9685330 9685331 + RIREX_LTR 8828 0.0010 (3/2989) 0 * Os_TE_213956 Os_TE_213956 Chr6 9685326 9685325 - RIREX_LTR 8828 0.0010 (3/2990) 0 * Os_TE_213957 Os_TE_213943 Chr6 9679040 9679041 + SPMLIKE 10989 0.0003 (1/2951) 0 * * Os_TE_213942 Chr6 9679038 9679037 - ORSgTETN00200001 10994 0.0019 (5/2632) 0 * * Os_TE_213928 Chr6 9676945 9676946 - MPING 430 0.0003 (1/2997) 0 * Os_TE_213927 Os_TE_213927 Chr6 9676943 9676942 + MPING 430 0.0003 (1/2994) 0 * Os_TE_213928 Os_TE_213926 Chr6 9675673 9675674 + ENSPM3_OS 10837 0.0017 (5/2956) 0 * Os_TE_213925 Os_TE_213925 Chr6 9675671 9675670 - ENSPM3_OS 10837 0.0013 (4/2969) 0 * Os_TE_213926 Os_TE_213892 Chr6 9664736 9664737 - HARB-N1_OS 2589 0.0017 (5/2987) 0 * Os_TE_213891 Os_TE_213891 Chr6 9664734 9664733 + HARB-N1_OS 2589 0.0017 (5/2982) 0 * Os_TE_213892 Os_TE_213884 Chr6 9663450 9663449 - COPIA1-LTR_OS 9292 0.0017 (5/2927) 0 * * Os_TE_213875 Chr6 9658557 9658556 + COPI2_LTR 4733 0.0003 (1/2989) 0 * * Os_TE_213871 Chr6 9657589 9657590 + ENSPM4_OS 11610 0.0053 (16/2994) 0 * * Os_TE_213857 Chr6 9650129 9650130 + GYPSY1-LTR_OS 8900 0.0017 (5/2972) 0 * * Os_TE_213813 Chr6 9631526 9623080 - RIREX_LTR 8828 0.0667 (199/2983) 1 Intact Os_TE_213812 Os_TE_213812 Chr6 9623080 9631526 + RIREX_LTR 8828 0.0668 (199/2981) 1 Intact Os_TE_213813 Os_TE_213807 Chr6 9611499 9622976 + ENSPM4_OS 11610 0.0714 (196/2745) 1 Intact * Os_TE_213805 Chr6 9611258 9611259 - ORSgTETN00200001 10994 0.0044 (13/2981) 0 * * Os_TE_213803 Chr6 9611200 9611201 + SZ-48LTR 3632 0.4113 (1224/2976) 0 * Os_TE_213802 Os_TE_213802 Chr6 9611196 9611195 - SZ-48LTR 3632 0.4132 (1230/2977) 0 * Os_TE_213803 Os_TE_213798 Chr6 9609707 9609708 + COPI2_LTR 4733 0.0017 (5/2980) 0 * Os_TE_213797 Os_TE_213797 Chr6 9609703 9609702 - COPI2_LTR 4733 0.0014 (4/2886) 0 * Os_TE_213798 Os_TE_213794 Chr6 9608880 9608881 - ORSgTETN00200001 10994 0.0017 (5/2977) 0 * * Os_TE_213785 Chr6 9604471 9604472 + ORSgTETNOOT00908 242 0.0017 (5/2971) 0 * * Os_TE_213783 Chr6 9603587 9603586 - COPI1_LTR 4721 0.4605 (1375/2986) 0 * * Os_TE_213777 Chr6 9600994 9600995 + TRUNCATOR2_LTR 2904 0.0007 (1/1533) 0 * * Os_TE_213775 Chr6 9600279 9600280 - ORSgTEMT01601834 234 0.0031 (9/2945) 0 * * Os_TE_213774 Chr6 9600216 9589268 - ENSPM4_OS 11610 0.5390 (1574/2920) 0.25 Intact Os_TE_213767 Os_TE_213767 Chr6 9589267 9600216 + ENSPM4_OS 11610 0.5583 (1672/2995) 1 Intact Os_TE_213774 Os_TE_213758 Chr6 9583536 9583537 + ORSiTERTOOT00027 10853 0.0017 (5/2983) 0 * Os_TE_213757 Os_TE_213757 Chr6 9583532 9583531 - RIRE3A_LTR 10580 0.0017 (5/2985) 0 * Os_TE_213758 Os_TE_213756 Chr6 9583460 9583459 - ORSgTETN00200002 7303 0.0007 (2/2982) 0 * * Os_TE_213753 Chr6 9581830 9581831 - ORSgTEMT00501447 126 0.4494 (1329/2957) 0 * Os_TE_213752 Os_TE_213752 Chr6 9581828 9581827 + ORSgTETNOOT01275 140 0.4519 (1342/2970) 0 * Os_TE_213753 Os_TE_213742 Chr6 9577948 9577949 + NDNA1TNA_OS 334 0.0057 (17/2987) 0 * Os_TE_213741 Os_TE_213741 Chr6 9577946 9577945 - NDNA1TNA_OS 334 0.0050 (15/2986) 0 * Os_TE_213742 Os_TE_213740 Chr6 9577889 9577890 + RIREX_LTR 8828 0.0003 (1/2984) 0 * * Os_TE_213725 Chr6 9573493 9573494 - ORSiTERTOOT00271 11428 0.3143 (770/2450) 0 * * Os_TE_213724 Chr6 9571701 9571700 - RILN8_OS 5085 0.4510 (1339/2969) 0 * * Os_TE_213720 Chr6 9569808 9569809 + TRUNCATOR2_LTR 2904 0.0014 (4/2876) 0 * Os_TE_213719 Os_TE_213719 Chr6 9569804 9569803 - TRUNCATOR2_LTR 2904 0.0024 (4/1675) 0 * Os_TE_213720 Os_TE_213693 Chr6 9559361 9559362 - TYPEM 227 0.0043 (13/2990) 0 * * Os_TE_213685 Chr6 9553072 9551994 - OSTE14 885 0.5234 (1541/2944) 1 Intact Os_TE_213684 Os_TE_213684 Chr6 9551990 9553068 - OSTE1 801 0.8855 (1554/1755) 1 Intact Os_TE_213685 Os_TE_213679 Chr6 9550252 9550005 - ORSgTEMT00901138 254 0.5812 (1710/2942) 1 Intact Os_TE_213675 Os_TE_213675 Chr6 9550003 9550250 + ORSgTEMT00901468 248 0.5649 (1689/2990) 1 Intact Os_TE_213679 Os_TE_213674 Chr6 9549555 9549556 + COPI2_LTR 4733 0.0087 (26/2990) 0 * Os_TE_213673 Os_TE_213673 Chr6 9549551 9549550 - COPI2_LTR 4733 0.0087 (26/2989) 0 * Os_TE_213674 Os_TE_213672 Chr6 9549105 9546782 + CACTA-Q 2268 0.5370 (1551/2888) 1 Intact Os_TE_213669 Os_TE_213669 Chr6 9546782 9549105 - CACTA-Q 2268 0.5518 (1634/2961) 1 Intact Os_TE_213672 Os_TE_213667 Chr6 9546516 9546515 - ORSgTEMT02400043 219 0.4531 (1353/2986) 0 * * Os_TE_213664 Chr6 9546139 9546140 - RIRE2_LTR 11306 0.4545 (1338/2944) 0 * Os_TE_213663 Os_TE_213663 Chr6 9546135 9546134 + RIRE2_LTR 11306 0.4622 (1345/2910) 0 * Os_TE_213664 Os_TE_213662 Chr6 9545226 9545227 + KIDDOD 279 0.4468 (1332/2981) 0 * * Os_TE_213657 Chr6 9540620 9540619 - CACTA-N 987 0.4484 (1339/2986) 0 * * Os_TE_213649 Chr6 9537100 9537101 + COPI2_LTR 4733 0.0011 (2/1861) 0 * * Os_TE_213637 Chr6 9533212 9533211 + ENSPM4_OS 11610 0.4485 (1327/2959) 0 * Os_TE_213636 Os_TE_213636 Chr6 9533211 9533212 - ENSPM4_OS 11610 0.4406 (1321/2998) 0 * Os_TE_213637 Os_TE_213634 Chr6 9531945 9531946 + ORSiTETN00200006 8216 0.0458 (137/2991) 0 * Os_TE_213633 Os_TE_213633 Chr6 9531943 9531942 - ORSiTETN00200006 8216 0.0452 (135/2989) 0 * Os_TE_213634 Os_TE_213630 Chr6 9528670 9528517 - ORSgTEMT01701182 145 0.5977 (1700/2844) 1 Intact Os_TE_213628 Os_TE_213628 Chr6 9528519 9528668 - STOWAWAY1_OS 149 0.5968 (1705/2857) 1 Intact Os_TE_213630 Os_TE_213611 Chr6 9512410 9512409 + RETROSAT5_LTR 13878 0.0006 (1/1713) 0 * * Os_TE_213609 Chr6 9511126 9511127 - ENSPM_OS 9843 0.0022 (5/2249) 0 * * Os_TE_213604 Chr6 9508071 9508072 - COPIA1-LTR_OS 9292 0.0029 (5/1702) 0 * * Os_TE_213603 Chr6 9507886 9507887 + SPMLIKE 10989 0.0785 (133/1695) 0 * Os_TE_213602 Os_TE_213602 Chr6 9507884 9507883 - ORSgTETN00200001 10994 0.0695 (116/1670) 0 * Os_TE_213603 Os_TE_213598 Chr6 9505661 9505662 - ENSPM4_OS 11610 0.0135 (23/1708) 0 * * Os_TE_213595 Chr6 9500832 9504622 - SZ-35LTR 3853 0.8565 (1564/1826) 1 Intact * Os_TE_213585 Chr6 9492773 9492772 + ORSgTEMT01602181 239 0.0754 (130/1724) 0 * * Os_TE_213578 Chr6 9491529 9480352 - ORSgTETN00200001 10994 0.1075 (180/1674) 1 Intact Os_TE_213575 Os_TE_213575 Chr6 9480353 9491529 + SPMLIKE 10989 0.1268 (214/1688) 1 Intact Os_TE_213578 Os_TE_213574 Chr6 9477251 9477250 - ORSgTEMT01601696 238 0.4297 (1250/2909) 0 * Os_TE_213573 Os_TE_213573 Chr6 9477250 9477251 + ORSgTEMT01602637 232 0.4356 (1275/2927) 0 * Os_TE_213574 Os_TE_213571 Chr6 9477074 9477075 + ORSgTEMT01601122 212 0.4338 (1258/2900) 0 * * Os_TE_213570 Chr6 9476960 9476959 - ORSgTEMT00100312 345 0.4436 (1279/2883) 0 * * Os_TE_213569 Chr6 9476933 9475296 - SETARIA1 1293 0.6115 (1475/2412) 1 Intact * Os_TE_213559 Chr6 9475047 9475285 + ORSgTEMT01602181 239 0.5099 (1474/2891) -1 Intact * Os_TE_213547 Chr6 9470187 9469931 - STOWAWAY14_OS 258 0.5728 (1562/2727) 1 Intact * Os_TE_213545 Chr6 9469811 9469812 - MPING 430 0.0004 (1/2780) 0 * Os_TE_213544 Os_TE_213544 Chr6 9469809 9469808 + MPING 430 0.0004 (1/2814) 0 * Os_TE_213545 Os_TE_213541 Chr6 9469139 9468987 + ORSgTEMT01701056 154 0.5414 (1531/2828) 1 Intact Os_TE_213539 Os_TE_213539 Chr6 9468987 9469136 + ORSgTEMT01700513 151 0.5475 (1557/2844) 1 Intact Os_TE_213541 Os_TE_213538 Chr6 9468815 9468814 - ORSgTEMT00501334 156 0.4699 (1333/2837) 0 * Os_TE_213537 Os_TE_213537 Chr6 9468814 9468815 - ORSgTEMT00502154 143 0.4718 (1340/2840) 0 * Os_TE_213538 Os_TE_213536 Chr6 9468404 9468405 + ORSgTETNOOT01668 244 0.4465 (1259/2820) 0 * Os_TE_213535 Os_TE_213535 Chr6 9468397 9468396 - TESS 244 0.4346 (1230/2830) 0 * Os_TE_213536 Os_TE_213532 Chr6 9467770 9467771 + OSTONOR1_LTR 6440 0.0053 (15/2816) 0 * Os_TE_213531 Os_TE_213531 Chr6 9467766 9467765 - ORSiTERT00100062 5674 0.0060 (17/2844) 0 * Os_TE_213532 Os_TE_213530 Chr6 9467543 9467544 - COPI2_LTR 4733 0.0007 (2/2868) 0 * Os_TE_213529 Os_TE_213529 Chr6 9467539 9467538 + COPI2_LTR 4733 0.0007 (2/2866) 0 * Os_TE_213530 Os_TE_213507 Chr6 9460364 9460365 - ORSgTEMT01601834 234 0.4645 (1249/2689) 0 * * Os_TE_213476 Chr6 9454963 9455169 - ORSgTEMT01400022 212 0.8996 (1506/1674) 1 Intact * Os_TE_213429 Chr6 9440052 9440053 - ORSgTETN00200001 10994 0.0018 (3/1712) 0 * Os_TE_213428 Os_TE_213428 Chr6 9440050 9440049 + SPMLIKE 10989 0.0018 (3/1712) 0 * Os_TE_213429 Os_TE_213427 Chr6 9439953 9439954 + COPI2_LTR 4733 0.0023 (4/1711) 0 * Os_TE_213426 Os_TE_213426 Chr6 9439949 9439948 - COPI2_LTR 4733 0.0023 (4/1708) 0 * Os_TE_213427 Os_TE_213419 Chr6 9437812 9437811 - ORSgTEMT00900965 216 0.0251 (44/1752) 0 * * Os_TE_213401 Chr6 9427882 9427883 + TWIFB1 3737 0.0035 (6/1728) 0 * * Os_TE_213391 Chr6 9420644 9420645 + COPI2_LTR 4733 0.7272 (1282/1763) 0 * * Os_TE_213372 Chr6 9408882 9408883 - SZ-54_LTR 5203 0.0038 (6/1585) 0 * * Os_TE_213370 Chr6 9408537 9408408 - ORSgTEMT01700029 143 0.5693 (1692/2972) 1 Intact Os_TE_213368 Os_TE_213368 Chr6 9408408 9408537 + ORSgTEMT01701591 154 0.5670 (1692/2984) 1 Intact Os_TE_213370 Os_TE_213366 Chr6 9406243 9406242 - STOWAWAY1_OS 149 0.0006 (1/1702) 0 * * Os_TE_213349 Chr6 9396072 9396071 + SZ-9LTR 965 0.0087 (15/1726) 0 * * Os_TE_213343 Chr6 9395466 9395213 + ORSgTETNOOT01834 251 0.5615 (1670/2974) 1 Intact Os_TE_213342 Os_TE_213342 Chr6 9395219 9395466 + ORSgTETNOOT01313 249 0.5658 (1686/2980) 1 Intact Os_TE_213343 Os_TE_213340 Chr6 9394255 9394256 + RETRO1_LTR 8314 0.4357 (1264/2901) 0 * Os_TE_213339 Os_TE_213339 Chr6 9394251 9394250 - RETRO2A_LTR 12895 0.4314 (1282/2972) 0 * Os_TE_213340 Os_TE_213335 Chr6 9393459 9393460 - STOWAWAY51_OS 246 0.4525 (1343/2968) 0 * * Os_TE_213334 Chr6 9392959 9393210 + ORSgTETNOOT00908 242 0.0691 (206/2982) 1 Intact * Os_TE_213330 Chr6 9391944 9385488 - TRUNCATOR 2918 0.5536 (1571/2838) 1 Intact Os_TE_213324 Os_TE_213324 Chr6 9385487 9391940 + TRUNCATOR 2918 0.5807 (1706/2938) 1 Intact Os_TE_213330 Os_TE_213323 Chr6 9385341 9385340 + ORSgTEMT01602188 240 0.4457 (1325/2973) 0 * * Os_TE_213320 Chr6 9384191 9383953 - ORSgTEMT01601432 239 0.5588 (1659/2969) 1 Intact * Os_TE_213316 Chr6 9383864 9383527 - ORSgTEMT00100799 337 0.5584 (1654/2962) 1 Intact Os_TE_213315 Os_TE_213315 Chr6 9383527 9383862 - ORSgTEMT00100272 356 0.5623 (1665/2961) 1 Intact Os_TE_213316 Os_TE_213305 Chr6 9381852 9381851 + COPIA2-LTR_OS 6433 0.0007 (2/2933) 0 * * Os_TE_213302 Chr6 9381722 9381840 + OSTE18 129 0.5612 (1647/2935) 1 Intact * Os_TE_213301 Chr6 9380674 9380675 + COPIA2-LTR_OS 6433 0.0003 (1/2932) 0 * Os_TE_213300 Os_TE_213300 Chr6 9380670 9380669 - COPIA2-LTR_OS 6433 0.0003 (1/2933) 0 * Os_TE_213301 Os_TE_213293 Chr6 9378695 9378696 + ORSgTEMT00100736 333 0.4455 (1328/2981) 0 * Os_TE_213292 Os_TE_213292 Chr6 9378689 9378688 - ORSgTEMT00100865 348 0.4439 (1322/2978) 0 * Os_TE_213293 Os_TE_213291 Chr6 9378688 9378689 + ORSgTEMT00100291 345 0.4474 (1336/2986) 0 * * Os_TE_213290 Chr6 9378355 9378207 - ORSgTEMT00501709 153 0.5711 (1690/2959) 1 Intact Os_TE_213288 Os_TE_213288 Chr6 9378206 9378351 - ORSgTEMT00501003 148 0.5949 (1695/2849) 1 Intact Os_TE_213290 Os_TE_213287 Chr6 9378172 9378028 + ORSgTEMT00501601 153 0.6091 (1703/2796) 1 Intact Os_TE_213285 Os_TE_213285 Chr6 9378022 9378166 + ORSgTEMT00501326 148 0.6091 (1664/2732) 1 Intact Os_TE_213287 Os_TE_213284 Chr6 9377901 9377750 - ORSgTEMT00501644 152 0.5784 (1645/2844) 1 Intact * Os_TE_213276 Chr6 9377037 9376721 - ORSgTEMT00101458 324 0.5689 (1656/2911) 1 Intact * Os_TE_213270 Chr6 9376199 9376056 + ORSgTEMT00501786 149 0.5710 (1697/2972) 1 Intact * Os_TE_213251 Chr6 9373166 9373167 + MPING 430 0.0034 (10/2959) 0 * Os_TE_213250 Os_TE_213250 Chr6 9373164 9373163 - MPING 430 0.0041 (12/2951) 0 * Os_TE_213251 Os_TE_213239 Chr6 9365862 9365861 - SC-3_LTR 5748 0.1462 (438/2995) 0 * * Os_TE_213201 Chr6 9345439 9345440 + RETROSAT2LTR 12796 0.0003 (1/2978) 0 * Os_TE_213200 Os_TE_213200 Chr6 9345437 9345436 - RETROSAT2LTR 12796 0.0003 (1/2976) 0 * Os_TE_213201 Os_TE_213187 Chr6 9341109 9341110 + TESSBIG 4057 0.2900 (585/2017) 0 * Os_TE_213186 Os_TE_213186 Chr6 9341102 9341101 - TESSBIG 4057 0.5020 (1386/2761) 0 * Os_TE_213187 Os_TE_213181 Chr6 9340369 9340370 - RIREX_LTR 8828 0.0037 (11/2964) 0 * Os_TE_213180 Os_TE_213180 Chr6 9340365 9340364 + RIREX_LTR 8828 0.0037 (11/2974) 0 * Os_TE_213181 Os_TE_213179 Chr6 9339600 9339601 - SEVERIN-2 1952 0.0226 (67/2969) 0 * * Os_TE_213178 Chr6 9338006 9338005 + STOWAWAY51_OS 246 0.0007 (2/2979) 0 * Os_TE_213177 Os_TE_213177 Chr6 9338000 9338001 - STOWAWAY51_OS 246 0.0007 (2/2993) 0 * Os_TE_213178 Os_TE_213176 Chr6 9337953 9337954 - SC-3_LTR 5748 0.0003 (1/2987) 0 * Os_TE_213175 Os_TE_213175 Chr6 9337949 9337948 + ORSiTERTOOT00296 5553 0.0003 (1/2989) 0 * Os_TE_213176 Os_TE_213173 Chr6 9337370 9337371 + COPI2_LTR 4733 0.0027 (8/2994) 0 * Os_TE_213172 Os_TE_213172 Chr6 9337366 9337365 - COPI2_LTR 4733 0.0027 (8/2993) 0 * Os_TE_213173 Os_TE_213169 Chr6 9335079 9335078 - OSLINE1_2 6317 0.4428 (1319/2979) 0 * * Os_TE_213137 Chr6 9318036 9318628 - JOUZHENA 607 0.4702 (1350/2871) 1 Intact * Os_TE_213125 Chr6 9306764 9306763 - RETROSAT2LTR 12796 0.1445 (245/1696) 0 * * Os_TE_213124 Chr6 9306756 9306580 + ORSgTEMT02000030 197 0.7871 (1449/1841) 1 Intact * Os_TE_213123 Chr6 9306202 9306203 + TELIA 141 0.0033 (9/2693) 0 * * Os_TE_213102 Chr6 9288293 9288294 - STOWAWAY13_OS 251 0.4973 (1465/2946) 0 * Os_TE_213101 Os_TE_213101 Chr6 9288292 9288291 + STOWAWAY13_OS 251 0.4881 (1417/2903) 0 * Os_TE_213102 Os_TE_213098 Chr6 9287713 9287564 + ORSgTEMT00501960 150 0.5201 (1526/2934) 1 Intact * Os_TE_213094 Chr6 9286953 9286954 + RIRE2_LTR 11306 0.4418 (1309/2963) 0 * Os_TE_213093 Os_TE_213093 Chr6 9286949 9286948 - RIRE2_LTR 11306 0.4378 (1295/2958) 0 * Os_TE_213094 Os_TE_213092 Chr6 9286848 9286849 + INDITTO 263 0.5052 (1502/2973) 0 * * Os_TE_213089 Chr6 9285825 9285826 + ORSgTEMT00500476 150 0.4546 (1246/2741) 0 * * Os_TE_213086 Chr6 9282903 9282658 + ORSgTEMT00900266 245 0.5843 (1445/2473) 1 Intact * Os_TE_213062 Chr6 9274525 9274290 + STOWAWAY42_OS 242 0.5282 (1545/2925) 1 Intact * Os_TE_213023 Chr6 9251858 9251859 + ORSgTEMT01602188 240 0.0010 (3/2939) 0 * * Os_TE_213013 Chr6 9246531 9246168 + CASTAWAY 364 0.5759 (1692/2938) 1 Intact * Os_TE_213003 Chr6 9245889 9245890 - ORSgTEMT00502359 149 0.2574 (579/2249) 0 * * Os_TE_212997 Chr6 9232264 9232263 - TRUNCATOR 2918 0.1192 (186/1561) 0 * * Os_TE_212993 Chr6 9231581 9231582 - MDR2 6967 0.4365 (1220/2795) 0 * * Os_TE_212991 Chr6 9230123 9230122 - ORSgTEMT00900099 250 0.0034 (6/1754) 0 * * Os_TE_212987 Chr6 9228724 9228723 + COPIA2-LTR_OS 6433 0.0103 (17/1657) 0 * * Os_TE_212981 Chr6 9225385 9228671 - CACTA-I 1124 0.6356 (1629/2563) 1 Intact * Os_TE_212980 Chr6 9225090 9225091 + HARB-1_OS 5166 0.0008 (2/2386) 0 * Os_TE_212979 Os_TE_212979 Chr6 9225088 9225087 - HARB-1_OS 5166 0.0007 (2/2705) 0 * Os_TE_212980 Os_TE_212949 Chr6 9215800 9215114 + BAJIELTR 4500 0.5501 (1510/2745) 1 Solo_LTR Os_TE_212943 Os_TE_212943 Chr6 9215114 9215800 - BAJIELTR 4500 0.5758 (1709/2968) 1 Solo_LTR Os_TE_212949 Os_TE_212835 Chr6 9144799 9144800 - RETROSAT2LTRA 3112 0.0003 (1/2996) 0 * Os_TE_212834 Os_TE_212834 Chr6 9144795 9144794 + RETROSAT2LTRA 3112 0.0003 (1/2997) 0 * Os_TE_212835 Os_TE_212823 Chr6 9140882 9142145 - SZ-19LTR 1513 0.5252 (1554/2959) 1 Intact * Os_TE_212820 Chr6 9140275 9140423 + STOWAWAY50_OS 174 0.5181 (1547/2986) 1 Intact * Os_TE_212814 Chr6 9139496 9139260 + STOWAWAY21_OS 243 0.5197 (1449/2788) 1 Intact Os_TE_212811 Os_TE_212811 Chr6 9139258 9139470 + ORSgTEMT01601122 212 0.5286 (1469/2779) 1 Intact Os_TE_212814 Os_TE_212808 Chr6 9138504 9138505 + COPIA2-LTR_OS 6433 0.0004 (1/2637) 0 * Os_TE_212807 Os_TE_212807 Chr6 9138500 9138499 - COPIA2-LTR_OS 6433 0.0004 (1/2673) 0 * Os_TE_212808 Os_TE_212806 Chr6 9138222 9138223 + COPIA2-LTR_OS 6433 0.0010 (3/2977) 0 * Os_TE_212805 Os_TE_212805 Chr6 9138218 9138217 - COPIA2-LTR_OS 6433 0.0010 (3/2990) 0 * Os_TE_212806 Os_TE_212801 Chr6 9135019 9135020 - TESS 244 0.3554 (418/1176) 0 * * Os_TE_212793 Chr6 9126758 9126759 + ORSgTETNOOT00908 242 0.0053 (7/1312) 0 * * Os_TE_212791 Chr6 9125953 9125952 - MuDR4_OS 7610 0.0054 (7/1298) 0 * * Os_TE_212771 Chr6 9116866 9116646 - ORSgTEMT00900167 231 0.0767 (224/2922) 1 Intact * Os_TE_212765 Chr6 9114362 9114134 - TREP215 239 0.0761 (227/2983) 1 Intact * Os_TE_212761 Chr6 9114145 9114351 - ORSgTEMT01600195 237 0.6318 (381/603) 1 Intact * Os_TE_212760 Chr6 9114134 9114362 + TREP215 239 0.0786 (231/2939) 1 Intact * Os_TE_212758 Chr6 9114058 9114059 - ORSgTEMT00501356 145 0.2095 (621/2964) 0 * * Os_TE_212748 Chr6 9103755 9103756 + CACTA-B 1103 0.1900 (545/2869) 0 * Os_TE_212747 Os_TE_212747 Chr6 9103754 9103753 - ORSgTETN00200001 10994 0.1992 (578/2901) 0 * Os_TE_212748 Os_TE_212746 Chr6 9103489 9103251 + ORSgTEMT01602753 239 0.2680 (231/862) 1 Intact Os_TE_212744 Os_TE_212744 Chr6 9103257 9103489 + ORSgTEMT01600891 233 0.2748 (224/815) 1 Intact Os_TE_212746 Os_TE_212742 Chr6 9103044 9103043 + ORSgTEMT01702111 154 0.7470 (617/826) 0 * * Os_TE_212731 Chr6 9099518 9099519 + SZ-67LTR 1540 0.0583 (164/2814) 0 * Os_TE_212730 Os_TE_212730 Chr6 9099514 9099513 - SZ-67LTR 1540 0.0720 (214/2973) 0 * Os_TE_212731 Os_TE_212726 Chr6 9097043 9097044 - F569 228 0.7316 (2077/2839) 0 * Os_TE_212725 Os_TE_212725 Chr6 9097041 9097040 + F569 228 0.7243 (2020/2789) 0 * Os_TE_212726 Os_TE_212722 Chr6 9096824 9096960 - COWARD 200 0.2915 (846/2902) 1 Intact * Os_TE_212708 Chr6 9090346 9090133 + ORSgTEMT01601122 212 0.0774 (227/2934) 1 Intact Os_TE_212706 Os_TE_212706 Chr6 9090107 9090344 - STOWAWAY21_OS 243 0.0764 (225/2946) 1 Intact Os_TE_212708 Os_TE_212704 Chr6 9089911 9089770 - ORSgTEMT00501764 142 0.0796 (231/2901) 1 Intact Os_TE_212703 Os_TE_212703 Chr6 9089769 9089908 + ORSgTEMT00501455 153 0.0792 (232/2931) 1 Intact Os_TE_212704 Os_TE_212697 Chr6 9087991 9087850 + ORSgTEMT00502215 139 0.0779 (228/2928) 1 Intact Os_TE_212694 Os_TE_212694 Chr6 9087849 9087991 + ORSgTEMT00500095 150 0.0792 (231/2917) 1 Intact Os_TE_212697 Os_TE_212685 Chr6 9084931 9084262 + GYPSY1-LTR_OS 8900 0.0832 (234/2811) 1 Solo_LTR * Os_TE_212662 Chr6 9055264 9055263 - TYPEG 427 0.0015 (4/2671) 0 * * Os_TE_212649 Chr6 9051076 9050917 - STOWAWAY1_OS 149 0.1001 (236/2357) 1 Intact Os_TE_212646 Os_TE_212646 Chr6 9050915 9051076 - ORSgTEMT01700785 162 0.0800 (235/2936) 1 Intact Os_TE_212649 Os_TE_212642 Chr6 9049925 9049786 - ORSgTETNOOT01930 140 0.1080 (238/2204) 1 Intact * Os_TE_212637 Chr6 9049047 9049046 - COPI1_LTR 4721 0.0017 (5/2941) 0 * * Os_TE_212633 Chr6 9048004 9047793 + ORSgTEMT01400024 215 0.0773 (229/2964) 1 Intact * Os_TE_212620 Chr6 9045032 9045031 + ORSgTEMT01602181 239 0.8214 (1067/1299) 0 * * Os_TE_212615 Chr6 9044525 9044387 + ORSgTEMT00500201 140 0.2395 (240/1002) 1 Intact Os_TE_212613 Os_TE_212613 Chr6 9044381 9044522 - ORSgTEMT00501356 145 0.8502 (244/287) 1 Intact Os_TE_212615 Os_TE_212602 Chr6 9040590 9040589 + ORSgTEMT00900846 250 0.0014 (4/2935) 0 * * Os_TE_212594 Chr6 9038266 9038265 + STOWAWAY51_OS 246 0.1020 (295/2893) 0 * * Os_TE_212515 Chr6 9003487 8991868 - ORSgTETN00200001 10994 0.0712 (195/2740) 1 Intact * Os_TE_212510 Chr6 8990678 8990679 - RIREX_LTR 8828 0.3231 (967/2993) 0 * Os_TE_212509 Os_TE_212509 Chr6 8990674 8990673 + RIREX_LTR 8828 0.3239 (969/2992) 0 * Os_TE_212510 Os_TE_212503 Chr6 8989670 8989671 - AMYLTP 383 0.0679 (198/2917) 0 * Os_TE_212502 Os_TE_212502 Chr6 8989662 8989661 + AMYLTP 383 0.0731 (214/2929) 0 * Os_TE_212503 Os_TE_212486 Chr6 8982808 8982195 - DS-RICE2N 613 0.4307 (1188/2758) 1 Intact Os_TE_212485 Os_TE_212485 Chr6 8982195 8982808 + DS-RICE2N 613 0.4271 (1177/2756) 1 Intact Os_TE_212486 Os_TE_212478 Chr6 8975395 8975396 - SC-3_LTR 5748 0.0003 (1/2991) 0 * Os_TE_212477 Os_TE_212477 Chr6 8975391 8975390 + ORSiTERTOOT00296 5553 0.0003 (1/2991) 0 * Os_TE_212478 Os_TE_212474 Chr6 8973245 8973246 + SUSU 279 0.2175 (633/2911) 0 * * Os_TE_212473 Chr6 8972864 8972617 - ORSgTEMT00900075 250 0.5019 (1192/2375) 1 Intact Os_TE_212471 Os_TE_212471 Chr6 8972617 8972862 + ORSgTEMT00900266 245 0.5046 (1204/2386) 1 Intact Os_TE_212473 Os_TE_212470 Chr6 8972291 8972065 + ORSgTEMT01602161 238 0.6641 (1200/1807) 1 Intact Os_TE_212468 Os_TE_212468 Chr6 8972065 8972291 - ORSgTEMT01600750 238 0.4970 (1165/2344) 1 Intact Os_TE_212470 Os_TE_212463 Chr6 8971327 8969858 + OSTE21 1271 0.0933 (222/2379) 1 Intact Os_TE_212462 Os_TE_212462 Chr6 8969853 8971323 + OSTE21 1271 0.0964 (230/2385) 1 Intact Os_TE_212463 Os_TE_212461 Chr6 8969802 8969801 - TEOS1 476 0.1161 (310/2670) 0 * * Os_TE_212455 Chr6 8965768 8965767 + TREP215 239 0.3996 (794/1987) 0 * * Os_TE_212446 Chr6 8960004 8960003 - COPIA1-LTR_OS 9292 0.0003 (1/2993) 0 * * Os_TE_212444 Chr6 8958681 8958682 - CASTAWAY 364 0.2129 (637/2992) 0 * Os_TE_212443 Os_TE_212443 Chr6 8958679 8958678 + CASTAWAY 364 0.2137 (638/2985) 0 * Os_TE_212444 Os_TE_212434 Chr6 8955259 8955516 - STOWAWAY41_OS 264 0.5854 (1552/2651) -1 Intact * Os_TE_212432 Chr6 8952737 8952996 + F770 284 0.6222 (1815/2917) 1 Intact * Os_TE_212428 Chr6 8952281 8952282 + STOWAWAY21_OS 243 0.3810 (1090/2861) 0 * * Os_TE_212423 Chr6 8950690 8950931 + ORSgTEMT01400032 215 0.6046 (1789/2959) 1 Intact * Os_TE_212415 Chr6 8946848 8946847 - ORSgTEMT01601208 238 0.6087 (1787/2936) 0 * * Os_TE_212409 Chr6 8945537 8945538 - NDNA2TNA_OS 346 0.2114 (627/2966) 0 * * Os_TE_212406 Chr6 8944694 8944695 + ORSiTEMT00300001 383 0.2097 (624/2975) 0 * Os_TE_212405 Os_TE_212405 Chr6 8944689 8944688 + ORSgTEMT00300063 413 0.2101 (624/2970) 0 * Os_TE_212406 Os_TE_212402 Chr6 8943392 8943393 + F770 284 0.2176 (646/2969) 0 * * Os_TE_212398 Chr6 8941786 8941787 + ORSiTERTOOT00296 5553 0.0044 (13/2975) 0 * Os_TE_212397 Os_TE_212397 Chr6 8941782 8941781 - SC-3_LTR 5748 0.0044 (13/2977) 0 * Os_TE_212398 Os_TE_212394 Chr6 8939171 8939172 - HARB-1_OS 5166 0.0004 (1/2395) 0 * Os_TE_212393 Os_TE_212393 Chr6 8939169 8939168 + HARB-1_OS 5166 0.0004 (1/2399) 0 * Os_TE_212394 Os_TE_212387 Chr6 8933447 8933448 + ORSgTEMT00600376 329 0.0004 (1/2414) 0 * Os_TE_212386 Os_TE_212386 Chr6 8933442 8933441 + ORSgTEMT00600272 361 0.0004 (1/2424) 0 * Os_TE_212387 Os_TE_212346 Chr6 8919482 8919721 + DITTO-2 235 0.5980 (1403/2346) 1 Intact * Os_TE_212336 Chr6 8913316 8913317 - ORSgTEMT00501219 127 0.3258 (976/2996) 0 * * Os_TE_212328 Chr6 8909293 8909292 + SZ-37_LTR 12001 0.2100 (627/2986) 0 * * Os_TE_212327 Chr6 8909101 8908738 + CASTAWAY 364 0.0942 (227/2410) 1 Intact Os_TE_212325 Os_TE_212325 Chr6 8908738 8909101 - CASTAWAY 364 0.0938 (226/2409) 1 Intact Os_TE_212327 Os_TE_212292 Chr6 8894366 8894367 + ORSiTERTOOT00296 5553 0.0003 (1/2992) 0 * Os_TE_212291 Os_TE_212291 Chr6 8894362 8894361 - SC-3_LTR 5748 0.0003 (1/2992) 0 * Os_TE_212292 Os_TE_212273 Chr6 8880190 8880191 - COPI2_LTR 4733 0.0003 (1/2957) 0 * Os_TE_212272 Os_TE_212272 Chr6 8880186 8880185 + COPI2_LTR 4733 0.0003 (1/2960) 0 * Os_TE_212273 Os_TE_212238 Chr6 8870220 8870219 - CACTA-Q 2268 0.0014 (4/2950) 0 * * Os_TE_212212 Chr6 8852181 8852325 - STOWAWAY15_OS 145 0.0759 (227/2990) 1 Intact * Os_TE_212209 Chr6 8850557 8850790 + ORSgTETNOOT01668 244 0.0739 (221/2992) 1 Intact * Os_TE_212186 Chr6 8848100 8848101 + GYPSY-A_LTR 8951 0.0010 (3/2982) 0 * Os_TE_212185 Os_TE_212185 Chr6 8848096 8848095 - GYPSY-A_LTR 8951 0.0010 (3/2985) 0 * Os_TE_212186 Os_TE_212184 Chr6 8847999 8847998 - STOWAWAY51_OS 246 0.0003 (1/2989) 0 * Os_TE_212183 Os_TE_212183 Chr6 8847993 8847994 + STOWAWAY51_OS 246 0.0003 (1/2983) 0 * Os_TE_212184 Os_TE_212172 Chr6 8840953 8844474 - SZ-40LTR 2465 0.0927 (233/2514) 1 Intact * Os_TE_212165 Chr6 8839091 8838852 + ORSgTEMT01600691 229 0.0752 (224/2978) 1 Intact Os_TE_212164 Os_TE_212164 Chr6 8838852 8839084 - ORSgTEMT01601976 234 0.0831 (227/2731) 1 Intact Os_TE_212165 Os_TE_212163 Chr6 8838831 8838830 + INDITTO 263 0.2062 (454/2202) 0 * Os_TE_212162 Os_TE_212162 Chr6 8838830 8838831 - INDITTO 263 0.2244 (669/2981) 0 * Os_TE_212163 Os_TE_212139 Chr6 8822806 8822807 - ORSgTETN00200002 7303 0.3002 (899/2995) 0 * * Os_TE_212123 Chr6 8820473 8820474 + MPING 430 0.0005 (1/1946) 0 * * Os_TE_212100 Chr6 8816561 8816560 - ORSgTEMT00500026 147 0.0007 (2/2683) 0 * * Os_TE_212058 Chr6 8789679 8789680 + FOCUS 257 0.0036 (9/2527) 0 * Os_TE_212057 Os_TE_212057 Chr6 8789677 8789676 - FOCUS 257 0.0035 (9/2571) 0 * Os_TE_212058 Os_TE_212054 Chr6 8788823 8788822 + ORSgTETNOOT00908 242 0.3662 (1097/2996) 0 * * Os_TE_212052 Chr6 8788767 8788766 + TWIF 586 0.0003 (1/2997) 0 * * Os_TE_212023 Chr6 8769410 8769409 - COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * * Os_TE_212013 Chr6 8762821 8762610 + ORSgTEMT01601122 212 0.7706 (2277/2955) 1 Intact Os_TE_212011 Os_TE_212011 Chr6 8762579 8762821 + STOWAWAY51_OS 246 0.7722 (2274/2945) 1 Intact Os_TE_212013 Os_TE_212006 Chr6 8758516 8758517 + OSTE9 421 0.5228 (1055/2018) 0 * Os_TE_212005 Os_TE_212005 Chr6 8758515 8758514 + OSTE9 421 0.6134 (1525/2486) 0 * Os_TE_212006 Os_TE_211997 Chr6 8752746 8752747 - COPIA2-LTR_OS 6433 0.0003 (1/2939) 0 * Os_TE_211996 Os_TE_211996 Chr6 8752742 8752741 + COPIA2-LTR_OS 6433 0.0003 (1/2936) 0 * Os_TE_211997 Os_TE_211941 Chr6 8730258 8730257 + ORSgTETNOOT00908 242 0.3627 (1084/2989) 0 * * Os_TE_211940 Chr6 8728560 8728561 - OSTE33 1012 0.2330 (690/2962) 0 * Os_TE_211939 Os_TE_211939 Chr6 8728549 8728548 - OSTE33 1012 0.2240 (660/2947) 0 * Os_TE_211940 Os_TE_211934 Chr6 8724409 8724410 + ORSiTERTOOT00296 5553 0.0003 (1/2976) 0 * Os_TE_211933 Os_TE_211933 Chr6 8724405 8724404 - SC-3_LTR 5748 0.0003 (1/2970) 0 * Os_TE_211934 Os_TE_211931 Chr6 8723649 8723443 + F770 284 0.6481 (1932/2981) 1 Intact * Os_TE_211904 Chr6 8703697 8703696 - ORSgTEMT01400012 212 0.0003 (1/2989) 0 * * Os_TE_211903 Chr6 8703541 8703540 - ORSgTEMT01400014 209 0.3579 (1060/2962) 0 * Os_TE_211902 Os_TE_211902 Chr6 8703535 8703536 - ORSgTEMT01400015 213 0.3626 (1078/2973) 0 * Os_TE_211903 Os_TE_211898 Chr6 8701323 8701324 + ORSgTERT00200432 668 0.0003 (1/2954) 0 * * Os_TE_211892 Chr6 8699502 8699503 + ORSiTERTOOT00226 792 0.0007 (2/2976) 0 * * Os_TE_211885 Chr6 8697296 8697295 - ORSgTEMT01601432 239 0.3437 (1003/2918) 0 * Os_TE_211884 Os_TE_211884 Chr6 8697283 8697284 + ORSgTEMT01602181 239 0.3289 (942/2864) 0 * Os_TE_211885 Os_TE_211882 Chr6 8696621 8696383 + ORSgTEMT01700012 149 0.8578 (1960/2285) 1 Intact * Os_TE_211878 Chr6 8695325 8695326 + SC-1_LTR 6888 0.0017 (5/2995) 0 * * Os_TE_211835 Chr6 8667481 8665730 + MERMITE 1401 0.6515 (1944/2984) 1 Intact * Os_TE_211820 Chr6 8663127 8662236 + ORSiTERTOOT00112 4608 0.6511 (1950/2995) 1 Intact * Os_TE_211803 Chr6 8656420 8649254 - OSTE33 1012 0.6615 (1894/2863) 1 Intact * Os_TE_211793 Chr6 8654197 8654196 - ORSiTERT00200154 9386 0.0035 (4/1152) 0 * * Os_TE_211784 Chr6 8649254 8656418 + OSTE33 1012 0.6578 (1907/2899) 1 Intact * Os_TE_211782 Chr6 8648142 8648141 + RIRE2_LTR 11306 0.0003 (1/2978) 0 * * Os_TE_211780 Chr6 8646140 8646141 - SZ-59_LTR 5600 0.0003 (1/2997) 0 * * Os_TE_211764 Chr6 8641974 8641975 - ORSgTEMT01600639 228 0.3535 (1013/2866) 0 * * Os_TE_211762 Chr6 8641686 8641687 - COWARD 200 0.3646 (1086/2979) 0 * * Os_TE_211761 Chr6 8641244 8641245 + MERMITE18E 1528 0.3520 (1039/2952) 0 * * Os_TE_211753 Chr6 8636561 8640481 + RETROSAT4_LTR 13504 0.4172 (1189/2850) 1 Solo_LTR * Os_TE_211737 Chr6 8631011 8631012 - ORSgTETN00200001 10994 0.3354 (609/1816) 0 * Os_TE_211736 Os_TE_211736 Chr6 8631009 8631008 + SPMLIKE 10989 0.2090 (567/2713) 0 * Os_TE_211737 Os_TE_211732 Chr6 8627535 8624615 - TRUNCATOR 2918 0.6369 (1894/2974) 1 Intact Os_TE_211727 Os_TE_211727 Chr6 8624615 8627531 + TRUNCATOR 2918 0.6405 (1910/2982) 1 Intact Os_TE_211732 Os_TE_211721 Chr6 8622174 8622045 + STOWAWAY50_OS 174 0.6631 (1935/2918) 1 Intact Os_TE_211719 Os_TE_211719 Chr6 8622045 8622173 + STOWAWAY50_OS 174 0.6719 (1941/2889) 1 Intact Os_TE_211721 Os_TE_211683 Chr6 8598019 8598218 - ORSgTEMT02000041 194 0.3909 (1161/2970) 1 Intact * Os_TE_211665 Chr6 8592836 8577294 + RIRE3_LTR 12054 0.5158 (1156/2241) 1 Intact * Os_TE_211629 Chr6 8577238 8577239 - SETARIA 1402 0.4638 (1051/2266) 0 * Os_TE_211628 Os_TE_211628 Chr6 8577230 8577229 + SETARIA 1402 0.4609 (1038/2252) 0 * Os_TE_211629 Os_TE_211619 Chr6 8575139 8575140 - MPING 430 0.0004 (1/2256) 0 * Os_TE_211618 Os_TE_211618 Chr6 8575137 8575136 + MPING 430 0.0004 (1/2286) 0 * Os_TE_211619 Os_TE_211613 Chr6 8574176 8571908 - CACTA-Q 2268 0.0292 (66/2257) 0.88 Intact Os_TE_211612 Os_TE_211612 Chr6 8571908 8574176 + CACTA-Q 2268 0.0515 (62/1205) 1 Intact Os_TE_211613 Os_TE_211605 Chr6 8571055 8571054 - RIREX_LTR 8828 0.0021 (5/2381) 0 * * Os_TE_211448 Chr6 8488742 8481322 - RIREX_LTR 8828 0.0292 (66/2264) 1 Intact Os_TE_211445 Os_TE_211445 Chr6 8481322 8488742 + RIREX_LTR 8828 0.0541 (66/1221) 1 Intact Os_TE_211448 Os_TE_211438 Chr6 8479081 8479080 + ORSgTERT00201438 165 0.0004 (1/2484) 0 * * Os_TE_211431 Chr6 8478345 8478346 - OSTE33 1012 0.4115 (846/2056) 0 * Os_TE_211430 Os_TE_211430 Chr6 8478335 8478334 - OSTE33 1012 0.4014 (808/2013) 0 * Os_TE_211431 Os_TE_211418 Chr6 8475159 8472032 - RIRE3_LTR 12054 0.6235 (1224/1963) 1 Solo_LTR * Os_TE_211362 Chr6 8447855 8434198 - MuDR3_OS 8604 0.4247 (1162/2736) 1 Intact Os_TE_211353 Os_TE_211353 Chr6 8434194 8447855 + MuDR3_OS 8604 0.4341 (1180/2718) 1 Intact Os_TE_211362 Os_TE_211349 Chr6 8433945 8433944 + ORSiTEMT00300001 383 0.3130 (869/2776) 0 * Os_TE_211348 Os_TE_211348 Chr6 8433944 8433945 + ORSgTEMT00300063 413 0.3147 (869/2761) 0 * Os_TE_211349 Os_TE_211305 Chr6 8420111 8420110 - ENSPM4_OS 11610 0.0003 (1/2873) 0 * * Os_TE_211278 Chr6 8405506 8405507 - SZ-22_LTR 4403 0.0013 (4/2999) 0 * Os_TE_211277 Os_TE_211277 Chr6 8405502 8405501 + ORSiTERTOOT00226 792 0.0013 (4/2999) 0 * Os_TE_211278 Os_TE_211273 Chr6 8401772 8401773 + TRUNCATOR 2918 0.0010 (3/2989) 0 * * Os_TE_211224 Chr6 8378227 8378430 - ORSgTETNOOT02044 254 0.3290 (956/2906) 1 Intact * Os_TE_211209 Chr6 8372596 8372597 + RIREX_LTR 8828 0.0007 (2/2963) 0 * Os_TE_211208 Os_TE_211208 Chr6 8372592 8372591 - RIREX_LTR 8828 0.0007 (2/2962) 0 * Os_TE_211209 Os_TE_211202 Chr6 8371027 8371028 - OSTE24 683 0.7010 (2080/2967) 0 * * Os_TE_211173 Chr6 8357418 8357419 + MPING 430 0.0003 (1/2958) 0 * * Os_TE_211171 Chr6 8357182 8357183 - MPING 430 0.0023 (7/2992) 0 * Os_TE_211170 Os_TE_211170 Chr6 8357180 8357179 + MPING 430 0.0023 (7/2991) 0 * Os_TE_211171 Os_TE_211162 Chr6 8352678 8352679 - ORSiTERTOOT00074 4935 0.0008 (2/2394) 0 * Os_TE_211161 Os_TE_211161 Chr6 8352674 8352673 + ORSiTERTOOT00074 4935 0.0007 (2/2988) 0 * Os_TE_211162 Os_TE_211152 Chr6 8349265 8349266 - TYPEM 227 0.7148 (2120/2966) 0 * * Os_TE_211109 Chr6 8336215 8336216 - RIREX_LTR 8828 0.0127 (38/2994) 0 * Os_TE_211108 Os_TE_211108 Chr6 8336211 8336210 + RIREX_LTR 8828 0.0124 (37/2993) 0 * Os_TE_211109 Os_TE_211093 Chr6 8331148 8331147 - SZ-62LTR 3649 0.0021 (5/2349) 0 * * Os_TE_211031 Chr6 8301514 8301515 + RIREX_LTR 8828 0.0003 (1/2893) 0 * Os_TE_211030 Os_TE_211030 Chr6 8301510 8301509 - RIREX_LTR 8828 0.0007 (2/2890) 0 * Os_TE_211031 Os_TE_211029 Chr6 8297147 8297148 - TYPEH 309 0.0007 (2/2890) 0.17 * * Os_TE_211009 Chr6 8289374 8289375 - ORSgTEMT00502293 151 0.7160 (2143/2993) 0 * * Os_TE_211004 Chr6 8288197 8288196 + MUDRN5_OS 374 0.0100 (30/2987) 0 * * Os_TE_210995 Chr6 8286037 8286038 + ORSgTEMT00500526 152 0.0007 (2/2976) 0 * * Os_TE_210958 Chr6 8271576 8267729 - RETROSAT4_LTR 13504 0.0624 (173/2774) 1 Solo_LTR Os_TE_210949 Os_TE_210949 Chr6 8267729 8271579 + RETROSAT4_LTR 13504 0.0515 (142/2758) -1 Solo_LTR Os_TE_210958 Os_TE_210911 Chr6 8253866 8253867 - NDNA1TNA_OS 334 0.0731 (217/2967) 0 * Os_TE_210910 Os_TE_210910 Chr6 8253865 8253864 + ORSgTEMT00101341 314 0.0770 (229/2975) 0 * Os_TE_210911 Os_TE_210907 Chr6 8252782 8252783 + ORSgTEMT00300122 416 0.0319 (89/2788) 0 * * Os_TE_210899 Chr6 8249490 8249491 + SZ-40LTR 2465 0.0136 (40/2949) 0 * Os_TE_210898 Os_TE_210898 Chr6 8249486 8249485 - SZ-40LTR 2465 0.0136 (40/2948) 0 * Os_TE_210899 Os_TE_210892 Chr6 8247772 8247771 - COPI2_LTR 4733 0.2093 (625/2986) 0 * * Os_TE_210891 Chr6 8247451 8247452 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_210890 Os_TE_210890 Chr6 8247447 8247446 - COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_210891 Os_TE_210870 Chr6 8243835 8243836 - ORSgTEMT01600223 220 0.2340 (663/2833) 0 * * Os_TE_210852 Chr6 8236034 8236033 + ORSgTEMT00700017 386 0.0003 (1/2957) 0 * Os_TE_210851 Os_TE_210851 Chr6 8236025 8236026 + ORSgTEMT00700017 386 0.0003 (1/2964) 0 * Os_TE_210852 Os_TE_210846 Chr6 8234160 8234161 + AMYLTP 383 0.0131 (39/2967) 0 * * Os_TE_210813 Chr6 8199995 8199994 + SZ-22_LTR 4403 0.0007 (2/2945) 0 * * Os_TE_210796 Chr6 8195468 8195467 + ORSgTETNOOT00221 261 0.0003 (1/2985) 0 * * Os_TE_210787 Chr6 8191510 8191511 + MUDRN5_OS 374 0.0003 (1/2958) 0 * Os_TE_210786 Os_TE_210786 Chr6 8191509 8191508 - ORSgTEMT00700002 381 0.0003 (1/2954) 0 * Os_TE_210787 Os_TE_210760 Chr6 8186151 8186152 - RETRO2_LTR 12874 0.0354 (101/2851) 0 * Os_TE_210759 Os_TE_210759 Chr6 8186147 8186146 + SZLTR 1249 0.0352 (101/2866) 0 * Os_TE_210760 Os_TE_210758 Chr6 8185978 8185979 + TWIF 586 0.2732 (659/2412) 0 * Os_TE_210757 Os_TE_210757 Chr6 8185971 8185970 - ORSiTETNOOT00144 607 0.3712 (1020/2748) 0 * Os_TE_210758 Os_TE_210749 Chr6 8182605 8182606 + ORSiTERTOOT00226 792 0.0027 (8/2963) 0 * Os_TE_210748 Os_TE_210748 Chr6 8182601 8182600 - SZ-22_LTR 4403 0.0027 (8/2965) 0 * Os_TE_210749 Os_TE_210709 Chr6 8173130 8173131 + ORSgTEMT01601591 242 0.0003 (1/2995) 0 * * Os_TE_210707 Chr6 8172646 8172647 - COPIA2-LTR_OS 6433 0.0007 (2/2993) 0 * * Os_TE_210702 Chr6 8170322 8170323 + ENSPM4_OS 11610 0.0004 (1/2657) 0 * * Os_TE_210699 Chr6 8168645 8168644 - NDNA2TNA_OS 346 0.8844 (2564/2899) 0 * Os_TE_210698 Os_TE_210698 Chr6 8168643 8168644 + NDNA2TNA_OS 346 0.8896 (2626/2952) 0 * Os_TE_210699 Os_TE_210688 Chr6 8166852 8166853 - ORSgTEMT02400246 177 0.2153 (629/2922) 0 * * Os_TE_210686 Chr6 8165979 8165980 + ENSPM4_OS 11610 0.2071 (603/2911) 0 * * Os_TE_210675 Chr6 8162215 8162216 - OSLINE1-2 7128 0.0034 (10/2975) 0 * * Os_TE_210671 Chr6 8160841 8160231 + DS-RICE2N 613 0.7284 (2009/2758) -1 Intact Os_TE_210667 Os_TE_210667 Chr6 8160231 8160837 - DS-RICE2N 613 0.7439 (2173/2921) 1 Intact Os_TE_210671 Os_TE_210665 Chr6 8158495 8158494 + ORSgTEMT02400014 229 0.3995 (1190/2979) 0 * Os_TE_210664 Os_TE_210664 Chr6 8158493 8158494 - ORSgTEMT02400179 221 0.3942 (1170/2968) 0 * Os_TE_210665 Os_TE_210660 Chr6 8152415 8152414 + ORSgTEMT01601591 242 0.0003 (1/2991) 0 * * Os_TE_210657 Chr6 8152105 8151443 - ORSiTERTOOT00214 738 0.7085 (1412/1993) 1 Intact * Os_TE_210623 Chr6 8140559 8140558 - GAIJIN 147 0.0004 (1/2736) 0 * * Os_TE_210598 Chr6 8135591 8135590 + ORSiTERTOOT00226 792 0.0004 (1/2357) 0 * * Os_TE_210594 Chr6 8134749 8134750 + ORSgTETNOOT00908 242 0.0369 (104/2816) 0 * * Os_TE_210592 Chr6 8134545 8134544 + MuDR2_OS 6770 0.3383 (926/2737) 0 * * Os_TE_210577 Chr6 8125008 8125009 - SC-3_LTR 5748 0.0017 (5/2989) 0 * Os_TE_210576 Os_TE_210576 Chr6 8125004 8125003 + ORSiTERTOOT00296 5553 0.0017 (5/2989) 0 * Os_TE_210577 Os_TE_210535 Chr6 8107791 8107792 + TELIA 141 0.0004 (1/2852) 0 * * Os_TE_210463 Chr6 8080226 8072047 + RIREX_LTR 8828 0.0457 (133/2909) 1 Intact Os_TE_210460 Os_TE_210460 Chr6 8072047 8080226 - RIREX_LTR 8828 0.0479 (141/2945) 1 Intact Os_TE_210463 Os_TE_210457 Chr6 8071212 8071211 + ORSgTEMT00100531 325 0.2906 (867/2983) 0 * * Os_TE_210451 Chr6 8070706 8070465 + ORSgTEMT00900740 252 0.2960 (872/2946) 1 Intact * Os_TE_210445 Chr6 8070206 8070459 - ORSgTEMT00900790 250 0.2934 (878/2992) 1 Intact * Os_TE_210440 Chr6 8068672 8068673 + OLO24 345 0.6796 (2019/2971) 0 * Os_TE_210439 Os_TE_210439 Chr6 8068671 8068670 - OLO24 345 0.6813 (2031/2981) 0 * Os_TE_210440 Os_TE_210437 Chr6 8067509 8067510 - OLO24 345 0.0347 (104/2997) 0 * Os_TE_210436 Os_TE_210436 Chr6 8067507 8067506 + OLO24 345 0.0347 (104/2998) 0 * Os_TE_210437 Os_TE_210434 Chr6 8065352 8065065 - STOWAWAY20_OS 278 0.3262 (970/2974) 1 Intact Os_TE_210433 Os_TE_210433 Chr6 8065065 8065352 + STOWAWAY20_OS 278 0.3309 (987/2983) 1 Intact Os_TE_210434 Os_TE_210418 Chr6 8051480 8051327 + ORSgTEMT01701663 106 0.3257 (966/2966) 1 Intact Os_TE_210417 Os_TE_210417 Chr6 8051327 8051480 - ORSgTEMT01700299 212 0.3288 (977/2971) 1 Intact Os_TE_210418 Os_TE_210414 Chr6 8048000 8048001 + SC-8_LTR 4951 0.0003 (1/2984) 0 * Os_TE_210413 Os_TE_210413 Chr6 8047996 8047995 - SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_210414 Os_TE_210411 Chr6 8045818 8045507 - STOWAWAY12_OS 312 0.3278 (980/2990) 1 Intact Os_TE_210409 Os_TE_210409 Chr6 8045505 8045820 - ORSgTEMT02900061 318 0.3283 (981/2988) 1 Intact Os_TE_210411 Os_TE_210406 Chr6 8043002 8042849 + ORSgTEMT01701591 154 0.3426 (984/2872) 1 Intact Os_TE_210405 Os_TE_210405 Chr6 8042849 8043002 + ORSgTEMT01701306 154 0.3333 (980/2940) 1 Intact Os_TE_210406 Os_TE_210403 Chr6 8042512 8042775 - STOLAB 312 0.3521 (994/2823) 1 Intact * Os_TE_210400 Chr6 8041966 8042268 - ORSgTEMT00900864 217 0.4018 (996/2479) 1 Intact * Os_TE_210387 Chr6 8035885 8035884 - BUHUI 375 0.8959 (2428/2710) 0 * * Os_TE_210385 Chr6 8032665 8032664 - TRUNCATOR2_LTR 2904 0.0008 (2/2580) -1 * * Os_TE_210380 Chr6 8031178 8031179 - SC-5 3770 0.3908 (1167/2986) 0 * Os_TE_210379 Os_TE_210379 Chr6 8031174 8031173 + SC-5 3770 0.3798 (1125/2962) 0 * Os_TE_210380 Os_TE_210351 Chr6 8022858 8022859 - SETARIA 1402 0.0790 (234/2963) 0 * Os_TE_210350 Os_TE_210350 Chr6 8022850 8022849 + SETARIA 1402 0.0715 (212/2966) 0 * Os_TE_210351 Os_TE_210325 Chr6 8015185 8015186 - COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_210324 Os_TE_210324 Chr6 8015181 8015180 + COPI2_LTR 4733 0.0003 (1/2999) 0 * Os_TE_210325 Os_TE_210312 Chr6 8010192 8010193 + GYPSY-A_LTR 8951 0.0003 (1/2996) 0 * Os_TE_210311 Os_TE_210311 Chr6 8010188 8010187 - SZ-40LTR 2465 0.0003 (1/2997) 0 * Os_TE_210312 Os_TE_210260 Chr6 7994424 7994425 - ORSgTERT00201216 11284 0.0004 (1/2296) 0 * * Os_TE_210259 Chr6 7993476 7993475 + ORSgTEMT00101674 340 0.8897 (1178/1324) 0 * * Os_TE_210255 Chr6 7991625 7991626 - MuDR4_OS 7610 0.0074 (20/2715) 0 * Os_TE_210254 Os_TE_210254 Chr6 7991616 7991615 - MuDR4_OS 7610 0.0070 (19/2725) 0 * Os_TE_210255 Os_TE_210250 Chr6 7989290 7989291 + OSTE15 1168 0.5991 (1681/2806) 0 * * Os_TE_210241 Chr6 7987474 7987475 + GYPSY-A_LTR 8951 0.0016 (2/1232) 0 * * Os_TE_210224 Chr6 7979906 7979674 + TESS 244 0.4338 (1284/2960) 1 Intact * Os_TE_210220 Chr6 7979218 7979219 + SINE03_OS 360 0.0018 (5/2844) 0 * * Os_TE_210219 Chr6 7979058 7978911 + TREP220 109 0.4443 (1307/2942) 1 Intact Os_TE_210217 Os_TE_210217 Chr6 7978911 7979058 + TREP220 109 0.6021 (1321/2194) 1 Intact Os_TE_210219 Os_TE_210203 Chr6 7968055 7968054 - ORSgTEMT02400179 221 0.3497 (950/2717) 0 * * Os_TE_210196 Chr6 7963848 7963849 + MPING 430 0.0034 (10/2981) 0 * Os_TE_210195 Os_TE_210195 Chr6 7963846 7963845 - MPING 430 0.0027 (8/2986) 0 * Os_TE_210196 Os_TE_210194 Chr6 7963465 7963464 + ORSgTEMT01702268 154 0.2464 (738/2995) 0 * Os_TE_210193 Os_TE_210193 Chr6 7963462 7963463 + ORSgTEMT01701115 144 0.2492 (747/2997) 0 * Os_TE_210194 Os_TE_210191 Chr6 7963234 7963235 + JOUZHENA 607 0.0003 (1/2997) 0 * Os_TE_210190 Os_TE_210190 Chr6 7963227 7963226 - JOUZHENA 607 0.0003 (1/2997) 0 * Os_TE_210191 Os_TE_210188 Chr6 7962352 7962353 + DS-RICE4N 715 0.0003 (1/2999) 0 * Os_TE_210187 Os_TE_210187 Chr6 7962340 7962339 + ORSiTETN00100011 676 0.0003 (1/2998) 0 * Os_TE_210188 Os_TE_210184 Chr6 7960175 7959925 + ORSgTETNOOT00908 242 0.7842 (2268/2892) 1 Intact * Os_TE_210183 Chr6 7959830 7959831 - RIREX_LTR 8828 0.0014 (4/2909) 0 * * Os_TE_210178 Chr6 7959033 7957273 + MERMITE18D 1491 0.7487 (2106/2813) 1 Intact * Os_TE_210170 Chr6 7954075 7954074 + STOWAWAY1_OS 149 0.2481 (735/2962) 0 * Os_TE_210169 Os_TE_210169 Chr6 7954074 7954075 + ORSgTEMT01701591 154 0.2475 (736/2974) 0 * Os_TE_210170 Os_TE_210164 Chr6 7952701 7952702 - CACTA-E 1207 0.2188 (630/2879) 0 * * Os_TE_210160 Chr6 7952069 7952070 - MuDR3_OS 8604 0.2409 (710/2947) 0 * * Os_TE_210156 Chr6 7944091 7944092 + SINE1OS 127 0.0003 (1/2944) 0 * * Os_TE_210148 Chr6 7941041 7941040 + F770 284 0.0004 (1/2301) 0 * * Os_TE_210142 Chr6 7938883 7938882 - ORSgTEMT02400246 177 0.0005 (1/2142) 0 * * Os_TE_210141 Chr6 7938806 7937411 - DS-RICE2N 613 0.6762 (1460/2159) 1 Intact Os_TE_210140 Os_TE_210140 Chr6 7937411 7938806 + DS-RICE4N 715 0.6541 (1322/2021) 1 Intact Os_TE_210141 Os_TE_210112 Chr6 7932268 7931238 + ORSgTEMT00500560 148 0.7588 (2249/2964) 1 Intact Os_TE_210110 Os_TE_210110 Chr6 7931233 7932265 - ORSgTEMT00500026 147 0.7641 (2277/2980) 1 Intact Os_TE_210112 Os_TE_210107 Chr6 7929391 7929035 - ORSgTEMT01800013 428 0.3488 (1027/2944) 1 Intact * Os_TE_210103 Chr6 7928716 7928717 + RIREX_LTR 8828 0.0113 (33/2914) 0 * * Os_TE_210101 Chr6 7926368 7926247 + SINE1OS 127 0.3418 (1023/2993) 1 Intact Os_TE_210099 Os_TE_210099 Chr6 7926245 7926368 - SINE16_OS 116 0.3499 (1035/2958) 1 Intact Os_TE_210101 Os_TE_210091 Chr6 7924898 7924899 + F770 284 0.0003 (1/2942) 0 * Os_TE_210090 Os_TE_210090 Chr6 7924896 7924895 - F770 284 0.0003 (1/2928) 0 * Os_TE_210091 Os_TE_210039 Chr6 7908887 7908886 + ORSiTERTOOT00250 3262 0.0007 (2/2887) 0 * * Os_TE_210005 Chr6 7890228 7878930 + RIRE2_LTR 11306 0.0514 (147/2859) -1 Intact Os_TE_209999 Os_TE_209999 Chr6 7878930 7890228 - RIRE2_LTR 11306 0.0528 (151/2859) 1 Intact Os_TE_210005 Os_TE_209998 Chr6 7878431 7878432 - Cassandra_OS-LTR 764 0.4948 (1481/2993) 0 * Os_TE_209997 Os_TE_209997 Chr6 7878427 7878426 - RETROSAT4_LTR 13504 0.4919 (1464/2976) 0 * Os_TE_209998 Os_TE_209995 Chr6 7877221 7862190 + SPMLIKE 10989 0.0844 (253/2997) 1 Intact Os_TE_209992 Os_TE_209992 Chr6 7862190 7877222 - ORSgTETN00200001 10994 0.0813 (243/2989) 1 Intact Os_TE_209995 Os_TE_209971 Chr6 7854225 7854226 - HARB-1_OS 5166 0.0004 (1/2351) 0 * * Os_TE_209905 Chr6 7830279 7830538 - STOWAWAY13_OS 251 0.6101 (1798/2947) 1 Intact * Os_TE_209897 Chr6 7824936 7824937 - STOLAB 312 0.0020 (5/2471) 0 * * Os_TE_209893 Chr6 7824221 7823256 - CACTA-J 1159 0.6146 (1687/2745) 1 Intact * Os_TE_209886 Chr6 7822733 7822587 - ORSgTEMT00500026 147 0.6918 (1782/2576) 1 Intact Os_TE_209884 Os_TE_209884 Chr6 7822578 7822732 + ORSgTEMT00500176 153 0.6008 (1782/2966) 1 Intact Os_TE_209886 Os_TE_209883 Chr6 7821928 7821929 + MPING 430 0.0003 (1/2981) 0 * Os_TE_209882 Os_TE_209882 Chr6 7821926 7821925 - MPING 430 0.0003 (1/2980) 0 * Os_TE_209883 Os_TE_209881 Chr6 7821738 7821739 + SEVERIN-2 1952 0.0067 (20/2964) 0 * * Os_TE_209874 Chr6 7819730 7819731 - COPIA2-LTR_OS 6433 0.0067 (20/2985) 0 * Os_TE_209873 Os_TE_209873 Chr6 7819726 7819725 + COPIA2-LTR_OS 6433 0.0060 (18/2985) 0 * Os_TE_209874 Os_TE_209870 Chr6 7816692 7816693 - Mudr5_OS 5952 0.4379 (1152/2631) 0 * * Os_TE_209869 Chr6 7815477 7815476 + ORSgTERT00201346 4268 0.0003 (1/2964) 0 * * Os_TE_209865 Chr6 7814791 7814790 - ORSgTEMT01601208 238 0.5784 (1671/2889) 0.67 * * Os_TE_209862 Chr6 7813934 7813935 - SZLTR 1249 0.4901 (1166/2379) 0 * * Os_TE_209861 Chr6 7813543 7813544 + ORSgTEMT00500560 148 0.4315 (1226/2841) 0 * Os_TE_209860 Os_TE_209860 Chr6 7813542 7813541 + ORSgTEMT00500906 148 0.4011 (1083/2700) 0 * Os_TE_209861 Os_TE_209853 Chr6 7811946 7811947 + EXPLORER 210 0.4209 (1243/2953) 0 * * Os_TE_209852 Chr6 7811449 7811311 + ORSgTEMT00501356 145 0.6001 (1789/2981) 1 Intact Os_TE_209851 Os_TE_209851 Chr6 7811306 7811447 - ORSgTEMT00501356 145 0.5979 (1784/2984) 1 Intact Os_TE_209852 Os_TE_209848 Chr6 7810908 7810909 - COPIA2-LTR_OS 6433 0.0030 (9/2956) 0 * * Os_TE_209845 Chr6 7809951 7809706 + ORSgTETNOOT00054 239 0.5957 (1728/2901) 1 Intact * Os_TE_209828 Chr6 7806604 7806605 + ORSiTERTOOT00226 792 0.0007 (2/2901) 0 * * Os_TE_209774 Chr6 7786924 7786925 + COPIA2-LTR_OS 6433 0.0003 (1/2875) 0 * Os_TE_209773 Os_TE_209773 Chr6 7786920 7786919 - COPIA2-LTR_OS 6433 0.0004 (1/2853) 0 * Os_TE_209774 Os_TE_209757 Chr6 7784217 7784216 - TRUNCATOR2_LTR 2904 0.0093 (27/2902) 0 * * Os_TE_209754 Chr6 7783998 7783997 - RETROSAT4_LTR 13504 0.3686 (1101/2987) 0 * * Os_TE_209731 Chr6 7773727 7773726 - COPIA2-LTR_OS 6433 0.0007 (2/2981) 0 * * Os_TE_209730 Chr6 7773647 7773648 - OSTE14 885 0.0231 (69/2992) 0 * * Os_TE_209728 Chr6 7773164 7773165 + SC-1_LTR 6888 0.0230 (69/2997) 0 * * Os_TE_209727 Chr6 7772326 7772327 + COPIA2-LTR_OS 6433 0.0003 (1/2969) 0 * * Os_TE_209724 Chr6 7771949 7771948 - ORSgTEMT01602404 253 0.0224 (67/2994) 0 * Os_TE_209723 Os_TE_209723 Chr6 7771946 7771947 + ORSgTEMT01602181 239 0.0211 (63/2991) 0 * Os_TE_209724 Os_TE_209717 Chr6 7770959 7770958 - TRUNCATOR 2918 0.0496 (121/2441) 0 * * Os_TE_209712 Chr6 7765266 7765267 - CASTAWAY 364 0.0511 (153/2992) 0 * Os_TE_209711 Os_TE_209711 Chr6 7765263 7765262 - ORSgTEMT00600304 361 0.0505 (151/2989) 0 * Os_TE_209712 Os_TE_209709 Chr6 7763249 7763248 + STOWAWAY51_OS 246 0.0003 (1/2972) 0 * Os_TE_209708 Os_TE_209708 Chr6 7763243 7763244 + ORSgTEMT01601591 242 0.0003 (1/2978) 0 * Os_TE_209709 Os_TE_209687 Chr6 7756102 7756101 - RETROSAT5_LTR 13878 0.0026 (5/1936) 0 * * Os_TE_209680 Chr6 7752891 7752892 - MPING 430 0.0017 (5/2991) 0 * Os_TE_209679 Os_TE_209679 Chr6 7752889 7752888 + MPING 430 0.0017 (5/2937) 0 * Os_TE_209680 Os_TE_209644 Chr6 7731635 7731634 - TREP219 104 0.0227 (61/2690) 0 * * Os_TE_209640 Chr6 7731215 7731214 + ORSgTEMT00500476 150 0.0238 (71/2979) 0 * * Os_TE_209636 Chr6 7729727 7729728 + HARB-1_OS 5166 0.0004 (1/2841) 0 * Os_TE_209635 Os_TE_209635 Chr6 7729725 7729724 - HARB-1_OS 5166 0.0003 (1/2919) 0 * Os_TE_209636 Os_TE_209624 Chr6 7725276 7725275 - COWARD 200 0.0228 (68/2979) 0 * * Os_TE_209617 Chr6 7723642 7723643 + NDNA1TNA_OS 334 0.0218 (65/2982) 0 * * Os_TE_209603 Chr6 7719282 7719283 + ORSgTEMT00700017 386 0.0020 (6/2961) 0 * * Os_TE_209588 Chr6 7716207 7716208 - TYPEG 427 0.0003 (1/2954) 0 * * Os_TE_209520 Chr6 7701897 7701898 + OSCOPIA2_LTR 5476 0.0003 (1/2984) 0 * Os_TE_209519 Os_TE_209519 Chr6 7701893 7701892 - OSCOPIA2_LTR 5476 0.0003 (1/2986) 0 * Os_TE_209520 Os_TE_209509 Chr6 7690456 7690457 - COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_209508 Os_TE_209508 Chr6 7690452 7690451 + COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_209509 Os_TE_209476 Chr6 7683433 7683432 - INDITTO 263 0.0003 (1/2961) 0 * * Os_TE_209469 Chr6 7680592 7680593 - COPI2_LTR 4733 0.0010 (3/2991) 0 * * Os_TE_209462 Chr6 7679568 7679569 - COPIA2-LTR_OS 6433 0.0003 (1/2911) 0 * Os_TE_209461 Os_TE_209461 Chr6 7679564 7679563 + COPIA2-LTR_OS 6433 0.0003 (1/2892) 0 * Os_TE_209462 Os_TE_209458 Chr6 7679108 7679109 - COPI2_LTR 4733 0.0014 (4/2809) 0 * * Os_TE_209447 Chr6 7676591 7676590 + ORSgTETNOOT00032 218 0.1642 (490/2984) 0 * * Os_TE_209446 Chr6 7676316 7676317 + CASGRANDA 465 0.0228 (68/2978) 0 * * Os_TE_209445 Chr6 7676098 7676099 + COPI2_LTR 4733 0.0007 (2/2981) 0 * Os_TE_209444 Os_TE_209444 Chr6 7676094 7676093 - COPI2_LTR 4733 0.0010 (3/2977) 0 * Os_TE_209445 Os_TE_209443 Chr6 7675180 7675179 + NDNA1TNA_OS 334 0.0017 (5/2954) 0 * * Os_TE_209434 Chr6 7661643 7661644 + TWIFB1 3737 0.0003 (1/2959) 0 * * Os_TE_209431 Chr6 7661475 7661474 - MERMITED 1572 0.0003 (1/2958) 0 * * Os_TE_209406 Chr6 7652856 7652857 - SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_209405 Os_TE_209405 Chr6 7652852 7652851 + SC-8_LTR 4951 0.0003 (1/2993) 0 * Os_TE_209406 Os_TE_209398 Chr6 7646935 7646936 - BUHUI 375 0.0021 (6/2838) 0 * * Os_TE_209389 Chr6 7640742 7640741 - CACTA-B 1103 0.0020 (6/2988) 0 * * Os_TE_209370 Chr6 7632089 7632090 - RIREX_LTR 8828 0.0003 (1/2966) 0 * Os_TE_209369 Os_TE_209369 Chr6 7632085 7632084 + RIREX_LTR 8828 0.0003 (1/2969) 0 * Os_TE_209370 Os_TE_209367 Chr6 7629519 7629520 - NDNA1TNA_OS 334 0.0040 (9/2237) 0 * Os_TE_209366 Os_TE_209366 Chr6 7629516 7629515 + NDNA1TNA_OS 334 0.0041 (9/2206) 0 * Os_TE_209367 Os_TE_209358 Chr6 7627756 7627757 + RIRE2_LTR 11306 0.0221 (66/2991) 0 * Os_TE_209357 Os_TE_209357 Chr6 7627752 7627751 - RIRE2_LTR 11306 0.0221 (66/2990) 0 * Os_TE_209358 Os_TE_209283 Chr6 7605886 7605887 + STOWAWAY15-2_OS 145 0.5332 (1599/2999) 0 * * Os_TE_209254 Chr6 7584769 7584770 - MERMITE18B 1306 0.0011 (1/922) -1 * * Os_TE_209253 Chr6 7583361 7583362 + RETROSAT4_LTR 13504 0.0003 (1/2997) 0 * Os_TE_209252 Os_TE_209252 Chr6 7583357 7583356 - SZ-35LTR 3853 0.0003 (1/2998) 0 * Os_TE_209253 Os_TE_209227 Chr6 7581372 7581373 - TYPEM 227 0.0131 (39/2987) 0 * Os_TE_209226 Os_TE_209226 Chr6 7581371 7581370 - ORSgTEMT02400179 221 0.0127 (38/2989) 0 * Os_TE_209227 Os_TE_209135 Chr6 7552780 7552781 + ORSgTETNOOT00908 242 0.4524 (1260/2785) 0 * * Os_TE_209119 Chr6 7545943 7545944 + TRUNCATOR 2918 0.0298 (82/2748) 0 * * Os_TE_209118 Chr6 7545920 7545921 - SZ-40LTR 2465 0.4204 (1259/2995) 0 * * Os_TE_209111 Chr6 7543814 7543813 + ENSPM5_OS 9581 0.0180 (50/2772) 0 * * Os_TE_209096 Chr6 7537853 7537852 - EnSpm-16_OS 13336 0.4226 (1262/2986) 0 * * Os_TE_209092 Chr6 7535505 7535506 + ORSgTEMT00700017 386 0.0003 (1/2896) 0 * * Os_TE_209085 Chr6 7528586 7528585 + TRUNCATOR 2918 0.0003 (1/2995) 0 * Os_TE_209084 Os_TE_209084 Chr6 7528585 7528586 - TRUNCATOR 2918 0.0003 (1/2995) 0 * Os_TE_209085 Os_TE_209081 Chr6 7528231 7528230 + RIREX_LTR 8828 0.4339 (1273/2934) 0 * * Os_TE_209078 Chr6 7528009 7528008 - ORSgTETNOOT00374 183 0.0013 (2/1512) 0 * * Os_TE_209075 Chr6 7526497 7526498 + COPI2_LTR 4733 0.0003 (1/2945) 0 * * Os_TE_209073 Chr6 7525890 7525889 + ORSgTEMT00500476 150 0.4441 (1328/2990) 0 * * Os_TE_209069 Chr6 7525016 7525214 + ORSgTEMT02000007 195 0.5706 (1689/2960) 1 Intact * Os_TE_209060 Chr6 7524058 7524328 + ORSgTEMT00901798 232 0.5738 (1703/2968) 1 Intact * Os_TE_209059 Chr6 7523554 7523329 - DITAIL 271 0.5811 (1713/2948) 1 Intact Os_TE_209056 Os_TE_209056 Chr6 7523325 7523545 + DITAIL 271 0.5742 (1660/2891) 1 Intact Os_TE_209059 Os_TE_209053 Chr6 7522621 7522622 - ORSgTEMT00501204 149 0.4429 (1322/2985) 0 * Os_TE_209052 Os_TE_209052 Chr6 7522615 7522614 + ORSgTEMT00500411 151 0.4317 (1273/2949) 0 * Os_TE_209053 Os_TE_209050 Chr6 7522155 7522154 - ORSgTEMT01602404 253 0.4284 (1253/2925) 0 * Os_TE_209049 Os_TE_209049 Chr6 7522150 7522151 + ORSgTEMT01602181 239 0.4252 (1234/2902) 0 * Os_TE_209050 Os_TE_209046 Chr6 7521808 7521322 + CLOUD-7 495 0.5624 (1649/2932) 1 Intact Os_TE_209045 Os_TE_209045 Chr6 7521322 7521808 + CLOUD-7 495 0.5655 (1676/2964) 1 Intact Os_TE_209046 Os_TE_209034 Chr6 7516332 7516333 + MPING 430 0.0003 (1/2996) 0 * Os_TE_209033 Os_TE_209033 Chr6 7516330 7516329 - MPING 430 0.0003 (1/2995) 0 * Os_TE_209034 Os_TE_209030 Chr6 7515881 7515880 - ORSgTEMT00901630 250 0.5308 (1592/2999) 0 * Os_TE_209029 Os_TE_209029 Chr6 7515877 7515878 + ORSgTEMT00901798 232 0.5306 (1588/2993) 0 * Os_TE_209030 Os_TE_209027 Chr6 7515773 7515510 + SZ-28LTR 262 0.4904 (1462/2981) 1 Intact * Os_TE_209019 Chr6 7515079 7514923 + ORSgTEMT01701071 170 0.4922 (1449/2944) 1 Intact Os_TE_209018 Os_TE_209018 Chr6 7514920 7515079 - ORSgTEMT01700029 143 0.6182 (1425/2305) 1 Intact Os_TE_209019 Os_TE_209017 Chr6 7514889 7514206 + Mudr5_OS 5952 0.5622 (1428/2540) 1 Intact * Os_TE_209004 Chr6 7511703 7511704 + MPING 430 0.0010 (3/2989) 0 * Os_TE_209003 Os_TE_209003 Chr6 7511701 7511700 - MPING 430 0.0020 (3/1472) 0 * Os_TE_209004 Os_TE_208998 Chr6 7510012 7509873 + ORSgTEMT00502544 146 0.4901 (1460/2979) 1 Intact * Os_TE_208994 Chr6 7509797 7509560 + ORSgTEMT01601122 212 0.4899 (1429/2917) 1 Intact Os_TE_208992 Os_TE_208992 Chr6 7509562 7509795 - STOWAWAY21_OS 243 0.4548 (1247/2742) 1 Intact Os_TE_208994 Os_TE_208989 Chr6 7508243 7509281 + STOWAWAY47_OS 148 0.5318 (1430/2689) 1 Intact * Os_TE_208984 Chr6 7506818 7506817 - STOWAWAY44_OS 240 0.5195 (1543/2970) 0 * * Os_TE_208982 Chr6 7506682 7506683 + ORSgTEMT00900230 250 0.5171 (1510/2920) 0 * * Os_TE_208970 Chr6 7503936 7503794 + ORSgTEMT00502327 143 0.4909 (1457/2968) 1 Intact * Os_TE_208963 Chr6 7503546 7503793 - ORSgTEMT00900099 250 0.4702 (1358/2888) 1 Intact * Os_TE_208958 Chr6 7502524 7502525 - AMYLTP 383 0.0003 (1/2996) 0 * Os_TE_208957 Os_TE_208957 Chr6 7502516 7502515 + AMYLTP 383 0.0003 (1/2997) 0 * Os_TE_208958 Os_TE_208956 Chr6 7502294 7502295 - COPI2_LTR 4733 0.0003 (1/2986) 0 * * Os_TE_208935 Chr6 7496649 7496650 - OSMU5 4881 0.0988 (145/1468) 0 * Os_TE_208934 Os_TE_208934 Chr6 7496640 7496639 + OSMU5 4881 0.0779 (152/1952) 0 * Os_TE_208935 Os_TE_208924 Chr6 7492588 7492589 + SC-8_LTR 4951 0.0003 (1/2977) 0 * Os_TE_208923 Os_TE_208923 Chr6 7492584 7492583 - SC-8_LTR 4951 0.0003 (1/2982) 0 * Os_TE_208924 Os_TE_208892 Chr6 7479250 7479251 - COPIA2-LTR_OS 6433 0.0621 (184/2961) 0 * Os_TE_208891 Os_TE_208891 Chr6 7479246 7479245 + COPIA2-LTR_OS 6433 0.0473 (139/2939) 0 * Os_TE_208892 Os_TE_208877 Chr6 7477320 7477321 - COPIA3-LTR_OS 5061 0.0852 (249/2922) 0 * * Os_TE_208871 Chr6 7476735 7476736 - COPIA2-LTR_OS 6433 0.0003 (1/2977) 0 * Os_TE_208870 Os_TE_208870 Chr6 7476731 7476730 + COPIA2-LTR_OS 6433 0.0003 (1/2967) 0 * Os_TE_208871 Os_TE_208865 Chr6 7474939 7474940 - ORSgTEMT00900075 250 0.5292 (1576/2978) 0 * * Os_TE_208863 Chr6 7469719 7474518 + rn_179-105_LTR 4837 0.3606 (1079/2992) 1 Intact * Os_TE_208857 Chr6 7465595 7465596 + RETROSAT4_LTR 13504 0.0345 (103/2988) 0 * * Os_TE_208853 Chr6 7463430 7463429 - STOWAWAY14_OS 258 0.0861 (257/2985) 0 * Os_TE_208852 Os_TE_208852 Chr6 7463426 7463427 + ORSgTEMT02700001 255 0.0837 (249/2976) 0 * Os_TE_208853 Os_TE_208848 Chr6 7461645 7462880 - CACTA-K 1131 0.3839 (1132/2949) 1 Intact * Os_TE_208846 Chr6 7461273 7461272 - STOWAWAY41_OS 264 0.6162 (1803/2926) 0 * * Os_TE_208845 Chr6 7460462 7460463 - ORSgTETN00200001 10994 0.0020 (6/2986) 0 * Os_TE_208844 Os_TE_208844 Chr6 7460460 7460459 + SPMLIKE 10989 0.0020 (6/2992) 0 * Os_TE_208845 Os_TE_208841 Chr6 7458952 7458953 + TRUNCATOR 2918 0.0268 (80/2990) 0 * * Os_TE_208829 Chr6 7450551 7453061 + TNR3 1536 0.8350 (1194/1430) 1 Intact * Os_TE_208828 Chr6 7450345 7450346 + ORSgTETNOOT02577 232 0.0016 (2/1215) 0 * Os_TE_208827 Os_TE_208827 Chr6 7450343 7450342 - ORSgTETNOOT01413 258 0.1320 (183/1386) 0 * Os_TE_208828 Os_TE_208825 Chr6 7449511 7449510 + ORSgTEMT00900319 250 0.1801 (265/1471) 0 * * Os_TE_208801 Chr6 7444781 7444782 - TRUNCATOR2_LTR 2904 0.0007 (1/1424) 0 * * Os_TE_208799 Chr6 7444269 7444270 + RIRE2_LTR 11306 0.0503 (74/1470) 0 * Os_TE_208798 Os_TE_208798 Chr6 7444265 7444264 - RIRE2_LTR 11306 0.0509 (75/1473) 0 * Os_TE_208799 Os_TE_208796 Chr6 7443913 7443914 - ORSgTETN00200001 10994 0.1040 (152/1461) 0 * Os_TE_208795 Os_TE_208795 Chr6 7443911 7443910 + SPMLIKE 10989 0.0008 (1/1314) 0 * Os_TE_208796 Os_TE_208794 Chr6 7443716 7443717 + ORSgTEMT00300069 394 0.0007 (1/1446) 0 * * Os_TE_208793 Chr6 7443564 7437910 + SZ-9LTR 965 0.7486 (1105/1476) 1 Intact Os_TE_208791 Os_TE_208791 Chr6 7437910 7438874 - SZ-9LTR 965 0.7457 (1094/1467) 1 Intact Os_TE_208793 Os_TE_208776 Chr6 7432803 7432802 - RETRO2_LTR 12874 0.0670 (107/1596) 0 * * Os_TE_208728 Chr6 7411657 7411658 + SPMLIKE 10989 0.0004 (1/2851) 0 * * Os_TE_208725 Chr6 7411118 7411117 + ORSgTEMT00101674 340 0.0003 (1/2897) 0 * * Os_TE_208704 Chr6 7408641 7408642 + F569 228 0.0663 (198/2985) 0 * Os_TE_208703 Os_TE_208703 Chr6 7408639 7408638 - F569 228 0.0663 (198/2987) 0 * Os_TE_208704 Os_TE_208691 Chr6 7402992 7402993 + SPMLIKE 10989 0.4803 (1411/2938) 0 * * Os_TE_208685 Chr6 7401785 7401784 - ORSgTEMT00300008 396 0.0023 (7/2993) 0 * * Os_TE_208670 Chr6 7397342 7397343 + RETROSAT2LTRA 3112 0.0204 (61/2986) 0 * Os_TE_208669 Os_TE_208669 Chr6 7397338 7397337 - RETROSAT3_LTR 11537 0.0224 (67/2994) 0 * Os_TE_208670 Os_TE_208664 Chr6 7393659 7388595 - RETROFIT3_LTR 5391 0.3547 (1062/2994) 1 Intact * Os_TE_208653 Chr6 7384414 7384415 - ORSgTETN00200001 10994 0.0019 (5/2568) 0 * * Os_TE_208615 Chr6 7373099 7373098 - CACTA-M 1129 0.5589 (1461/2614) 0 * * Os_TE_208613 Chr6 7372663 7372664 + ORSiTERTOOT00027 10853 0.0740 (190/2566) 0 * * Os_TE_208610 Chr6 7371894 7371895 - MERMITE18C 1473 0.5360 (1339/2498) 0 * Os_TE_208609 Os_TE_208609 Chr6 7371890 7371889 - MERMITE-17 2759 0.5469 (1399/2558) 0 * Os_TE_208610 Os_TE_208607 Chr6 7371504 7371505 + OSMAR1 5265 0.5322 (1380/2593) 0 * * Os_TE_208600 Chr6 7369213 7369212 - ORSgTEMT03000007 372 0.5687 (1511/2657) 0 * Os_TE_208599 Os_TE_208599 Chr6 7369205 7369206 + ORSgTEMT03000039 377 0.5579 (1451/2601) 0 * Os_TE_208600 Os_TE_208597 Chr6 7368502 7368501 + GYPSY-B_LTR 7068 0.5586 (1464/2621) 0 * * Os_TE_208559 Chr6 7349756 7349757 - F118 179 0.5686 (1508/2652) 0 * Os_TE_208558 Os_TE_208558 Chr6 7349749 7349748 + F118 179 0.4892 (1383/2827) 0 * Os_TE_208559 Os_TE_208552 Chr6 7345407 7345408 - RETROSAT4_LTR 13504 0.0004 (1/2630) 0 * * Os_TE_208549 Chr6 7344473 7344474 + ORSgTEMT00600272 361 0.0381 (103/2705) 0 * Os_TE_208548 Os_TE_208548 Chr6 7344468 7344467 + ORSgTEMT00600376 329 0.0349 (94/2697) 0 * Os_TE_208549 Os_TE_208541 Chr6 7342035 7342036 - ORSgTEMT01700029 143 0.5861 (1607/2742) 0 * * Os_TE_208537 Chr6 7338926 7338927 - STOWAWAY30_OS 147 0.5251 (1515/2885) 0 * * Os_TE_208530 Chr6 7334262 7334261 - OSTE14 885 0.0034 (6/1789) 0 * * Os_TE_208529 Chr6 7333152 7333153 + ORSgTETNOOT00032 218 0.0006 (1/1764) 0 * * Os_TE_208527 Chr6 7332498 7332497 - GYPSY-B_LTR 7068 0.5313 (1528/2876) 0 * * Os_TE_208525 Chr6 7330141 7330142 + GYPSY-B_LTR 7068 0.5336 (1581/2963) 0 * * Os_TE_208523 Chr6 7329862 7329861 - RIREX_LTR 8828 0.0024 (7/2935) 0 * * Os_TE_208498 Chr6 7322347 7323023 - SZ-63_LTR 9602 0.4778 (1378/2884) 1 Intact * Os_TE_208497 Chr6 7321569 7321393 + ORSgTEMT02400246 177 0.4925 (1372/2786) 1 Intact Os_TE_208496 Os_TE_208496 Chr6 7321393 7321569 - ORSgTEMT02400246 177 0.5208 (1376/2642) 1 Intact Os_TE_208497 Os_TE_208485 Chr6 7320588 7320587 - ORSgTETN00200001 10994 0.0043 (6/1396) 0 * * Os_TE_208484 Chr6 7320363 7320362 - ORSgTEMT00901138 254 0.0049 (7/1416) 0 * * Os_TE_208467 Chr6 7314095 7314096 + SPMLIKE 10989 0.0010 (3/2984) 0 * * Os_TE_208433 Chr6 7307615 7307616 + COPIA2-LTR_OS 6433 0.0010 (3/2935) 0 * * Os_TE_208390 Chr6 7283174 7283175 - COPIA2-LTR_OS 6433 0.0006 (1/1551) 0 * Os_TE_208389 Os_TE_208389 Chr6 7283170 7283169 + COPIA2-LTR_OS 6433 0.0006 (1/1554) 0 * Os_TE_208390 Os_TE_208365 Chr6 7271504 7271651 + ORSgTEMT00501072 147 0.5220 (1533/2937) 1 Intact * Os_TE_208361 Chr6 7269169 7269170 - ORSiTETNOOT00134 607 0.0007 (1/1487) 0 * * Os_TE_208345 Chr6 7253899 7253898 - TRUNCATOR 2918 0.0004 (1/2293) 0 * * Os_TE_208343 Chr6 7253872 7253873 - ORSgTEMT01602404 253 0.0007 (2/2970) 0 * * Os_TE_208337 Chr6 7253374 7253375 - ORSiTETNOOT00216 3569 0.0204 (60/2943) 0 * Os_TE_208336 Os_TE_208336 Chr6 7253367 7253366 + TWIFBIG 3567 0.0024 (7/2898) 0 * Os_TE_208337 Os_TE_208331 Chr6 7251655 7251654 + CRMA1_LTR 7543 0.0217 (63/2907) 0 * * Os_TE_208329 Chr6 7250953 7250954 + MPING 430 0.0010 (3/2993) 0 * * Os_TE_208323 Chr6 7246891 7246890 - ORSgTEMT01600244 239 0.3957 (1001/2530) 0 * * Os_TE_208313 Chr6 7241675 7241676 + ORSiTEMT00300001 383 0.5034 (1492/2964) 0 * Os_TE_208312 Os_TE_208312 Chr6 7241669 7241668 + ORSgTEMT00300063 413 0.5115 (1495/2923) 0 * Os_TE_208313 Os_TE_208293 Chr6 7240803 7240804 + NDNA1TNA_OS 334 0.0003 (1/2902) 0 * Os_TE_208292 Os_TE_208292 Chr6 7240801 7240800 - NDNA1TNA_OS 334 0.0003 (1/2905) 0 * Os_TE_208293 Os_TE_208291 Chr6 7240674 7240675 - NDNA1TNA_OS 334 0.0310 (92/2972) 0 * * Os_TE_208288 Chr6 7240592 7240593 + INDITTO 263 0.0310 (47/1517) 0 * Os_TE_208287 Os_TE_208287 Chr6 7240590 7240589 - INDITTO 263 0.0155 (46/2960) 0 * Os_TE_208288 Os_TE_208286 Chr6 7240457 7240456 + STOWAWAY49_OS 241 0.4997 (1478/2958) 0 * * Os_TE_208267 Chr6 7237097 7237098 + ORSgTETNOOT00908 242 0.4986 (1460/2928) 0 * Os_TE_208266 Os_TE_208266 Chr6 7237095 7237094 + ORSgTETNOOT02019 240 0.5026 (1476/2937) 0 * Os_TE_208267 Os_TE_208265 Chr6 7236853 7236587 - ORSgTEMT06100010 269 0.3329 (961/2887) 1 Intact Os_TE_208262 Os_TE_208262 Chr6 7236585 7236853 + ORSgTEMT06100010 269 0.3373 (960/2846) 1 Intact Os_TE_208265 Os_TE_208261 Chr6 7236479 7236480 + MUDRN1_OS 764 0.4749 (1392/2931) 0 * Os_TE_208260 Os_TE_208260 Chr6 7236471 7236470 + MUDRN2_OS 756 0.4583 (1314/2867) 0 * Os_TE_208261 Os_TE_208237 Chr6 7230840 7230656 - SNAP-OL3 189 0.5155 (1530/2968) 1 Intact Os_TE_208235 Os_TE_208235 Chr6 7230654 7230838 + SNAP-OL3 189 0.5160 (1531/2967) 1 Intact Os_TE_208237 Os_TE_208230 Chr6 7229412 7229413 - ORSgTEMT01701236 147 0.0446 (68/1524) 0 * Os_TE_208229 Os_TE_208229 Chr6 7229408 7229407 + ORSgTEMT01701104 154 0.0449 (67/1491) 0 * Os_TE_208230 Os_TE_208228 Chr6 7229405 7229406 + ORSgTEMT01700923 149 0.0232 (67/2886) 0 * * Os_TE_208226 Chr6 7229163 7229162 + TWIF 586 0.0004 (1/2831) 0 * * Os_TE_208221 Chr6 7228643 7228644 + SINE03_OS 360 0.0377 (59/1563) 0 * * Os_TE_208216 Chr6 7226604 7226605 - ORSgTEMT01601881 239 0.4715 (1356/2876) 0 * * Os_TE_208214 Chr6 7224887 7224886 - FOCUS 257 0.0020 (6/2995) 0 * * Os_TE_208207 Chr6 7221682 7221683 + TWIFB1 3737 0.0003 (1/2902) 0 * * Os_TE_208204 Chr6 7220235 7220236 - ORSiTETNOOT00216 3569 0.2629 (540/2054) 0 * Os_TE_208203 Os_TE_208203 Chr6 7220228 7220227 + TWIFBIG 3567 0.4758 (1329/2793) 0 * Os_TE_208204 Os_TE_208202 Chr6 7220162 7220163 - ORSiTETNOOT00134 607 0.0544 (114/2096) 0 * Os_TE_208201 Os_TE_208201 Chr6 7220155 7220154 + TWIF 586 0.0647 (136/2103) 0 * Os_TE_208202 Os_TE_208198 Chr6 7218762 7218763 - ORSgTEMT00900935 248 0.0217 (65/2994) 0 * * Os_TE_208182 Chr6 7212230 7212229 + RIREX_LTR 8828 0.0003 (1/2926) 0 * * Os_TE_208162 Chr6 7204297 7204296 - RPO_OS 1983 0.4502 (1319/2930) 0 * * Os_TE_208161 Chr6 7204258 7204257 + TWIFBIG 3567 0.0207 (53/2566) 0 * * Os_TE_208154 Chr6 7201633 7195961 - ORSiTERTOOT00368 5673 0.3543 (1060/2992) 1 Intact * Os_TE_208151 Chr6 7200079 7200078 - SZ-22_LTR 4403 0.0007 (1/1477) 0 * * Os_TE_208146 Chr6 7195958 7201633 + ORSiTERTOOT00368 5673 0.3545 (1060/2990) 1 Intact * Os_TE_208134 Chr6 7192389 7192390 + COWARD 200 0.0181 (54/2983) 0 * Os_TE_208133 Os_TE_208133 Chr6 7192387 7192386 - COWARD-3 221 0.0220 (66/2995) 0 * Os_TE_208134 Os_TE_208108 Chr6 7180285 7180284 - ORSgTEMT00900099 250 0.0225 (67/2983) 0 * * Os_TE_208102 Chr6 7177512 7177513 - COPI2_LTR 4733 0.0003 (1/2987) 0 * * Os_TE_208057 Chr6 7165447 7165448 + SZ-67LTR 1540 0.0933 (274/2936) 0 * Os_TE_208056 Os_TE_208056 Chr6 7165443 7165442 - RETROSAT5_LTR 13878 0.0985 (291/2953) 0 * Os_TE_208057 Os_TE_208041 Chr6 7162611 7162849 + STOWAWAY41_OS 264 0.6050 (1769/2924) 1 Intact * Os_TE_208039 Chr6 7161022 7160899 + STOWAWAY15-2_OS 145 0.5987 (1787/2985) 1 Intact * Os_TE_208004 Chr6 7144476 7144477 + COPIA2-LTR_OS 6433 0.0006 (1/1746) 0 * Os_TE_208003 Os_TE_208003 Chr6 7144472 7144471 - COPIA2-LTR_OS 6433 0.0006 (1/1808) 0 * Os_TE_208004 Os_TE_207991 Chr6 7141089 7141090 - COPIA2-LTR_OS 6433 0.0040 (12/2973) 0 * Os_TE_207990 Os_TE_207990 Chr6 7141085 7141084 + COPIA2-LTR_OS 6433 0.0037 (11/2985) 0 * Os_TE_207991 Os_TE_207989 Chr6 7141036 7141037 - RIRE2_LTR 11306 0.1448 (372/2569) 0 * Os_TE_207988 Os_TE_207988 Chr6 7141032 7141031 - ORSgTERT00201216 11284 0.1236 (368/2977) 0 * Os_TE_207989 Os_TE_207977 Chr6 7129913 7129914 + ORSiTERTOOT00296 5553 0.0003 (1/2971) 0 * Os_TE_207976 Os_TE_207976 Chr6 7129909 7129908 - SC-3_LTR 5748 0.0003 (1/2974) 0 * Os_TE_207977 Os_TE_207966 Chr6 7125475 7125476 - NDNA1TNA_OS 334 0.0007 (2/2862) 0 * Os_TE_207965 Os_TE_207965 Chr6 7125473 7125472 + NDNA1TNA_OS 334 0.0007 (2/2862) 0 * Os_TE_207966 Os_TE_207952 Chr6 7123357 7123356 - COWARD-3 221 0.0004 (1/2744) 0 * * Os_TE_207934 Chr6 7117328 7117329 - GAIJIN 147 0.0007 (2/2980) 0 * * Os_TE_207917 Chr6 7109965 7109966 + TYPEU4 402 0.0007 (2/2993) 0 * Os_TE_207916 Os_TE_207916 Chr6 7109957 7109956 - TYPEU1 380 0.0007 (2/2993) 0 * Os_TE_207917 Os_TE_207893 Chr6 7108020 7108021 + OSTE15 1168 0.3522 (1053/2990) 0 * * Os_TE_207891 Chr6 7106257 7106258 - COPI2_LTR 4733 0.0003 (1/2984) 0 * Os_TE_207890 Os_TE_207890 Chr6 7106253 7106252 + COPI2_LTR 4733 0.0003 (1/2989) 0 * Os_TE_207891 Os_TE_207848 Chr6 7082792 7082791 + ORSgTEMT00300122 416 0.0044 (6/1358) 0 * * Os_TE_207790 Chr6 7055096 7055097 - TYPEH 309 0.2730 (816/2989) 0 * Os_TE_207789 Os_TE_207789 Chr6 7055094 7055093 - TYPEH 309 0.2718 (813/2991) 0 * Os_TE_207790 Os_TE_207778 Chr6 7046424 7046294 - STOWAWAY50_OS 174 0.7430 (2194/2953) 1 Intact Os_TE_207775 Os_TE_207775 Chr6 7046294 7046424 - ORSgTEMT01701882 154 0.7516 (2191/2915) 1 Intact Os_TE_207778 Os_TE_207773 Chr6 7045891 7045892 + ORSgTETNOOT01930 140 0.0007 (2/2975) 0 * * Os_TE_207772 Chr6 7045832 7045833 + RIREX_LTR 8828 0.0009 (2/2240) 0 * Os_TE_207771 Os_TE_207771 Chr6 7045828 7045827 - RIREX_LTR 8828 0.0003 (1/2975) 0 * Os_TE_207772 Os_TE_207770 Chr6 7043837 7043838 + TWIFB1 3737 0.0004 (1/2704) 0 * * Os_TE_207768 Chr6 7043750 7043555 + ORSgTEMT00900533 246 0.7581 (2128/2807) -1 Intact * Os_TE_207763 Chr6 7043536 7043537 + ORSgTEMT00101674 340 0.0589 (130/2208) 0 * * Os_TE_207760 Chr6 7043022 7043023 - ORSgTEMT00901723 248 0.2721 (811/2981) 0 * * Os_TE_207754 Chr6 7040867 7040866 - ORSgTEMT00501158 153 0.2754 (820/2977) 0 * * Os_TE_207753 Chr6 7040780 7040781 - ORSgTEMT02400148 214 0.2430 (723/2975) 0 * * Os_TE_207752 Chr6 7040740 7040741 - RIREX_LTR 8828 0.0003 (1/2974) 0 * Os_TE_207751 Os_TE_207751 Chr6 7040736 7040735 + RIREX_LTR 8828 0.0003 (1/2949) 0 * Os_TE_207752 Os_TE_207749 Chr6 7039989 7039990 - OSTE14 885 0.2842 (821/2889) 0 * Os_TE_207748 Os_TE_207748 Chr6 7039987 7039986 - OSTE14 885 0.2845 (826/2903) 0 * Os_TE_207749 Os_TE_207724 Chr6 7030942 7030943 + COPIA2-LTR_OS 6433 0.0313 (93/2975) 0 * * Os_TE_207693 Chr6 7024985 7024986 - RETRO2A_LTR 12895 0.2601 (767/2949) 0 * * Os_TE_207673 Chr6 7015624 7015625 + ORSgTEMT00100694 349 0.2886 (856/2966) 0 * * Os_TE_207643 Chr6 7004541 7004542 + TRUNCATOR2_LTR 2904 0.0003 (1/2985) 0 * Os_TE_207642 Os_TE_207642 Chr6 7004537 7004536 - TRUNCATOR2_LTR 2904 0.0003 (1/2991) 0 * Os_TE_207643 Os_TE_207641 Chr6 7003074 7003073 - DNAUN1_OS 408 0.2531 (746/2947) 0 * * Os_TE_207635 Chr6 7001598 7001597 - TEMPINDAS 4259 0.0461 (138/2993) 0 * * Os_TE_207622 Chr6 6993831 6993832 - COPI2_LTR 4733 0.0007 (2/2995) 0 * Os_TE_207621 Os_TE_207621 Chr6 6993827 6993826 + COPI2_LTR 4733 0.0003 (1/2993) 0 * Os_TE_207622 Os_TE_207615 Chr6 6990681 6990682 - COPIA2-LTR_OS 6433 0.0331 (99/2988) 0 * Os_TE_207614 Os_TE_207614 Chr6 6990677 6990676 + COPIA2-LTR_OS 6433 0.0328 (98/2990) 0 * Os_TE_207615 Os_TE_207613 Chr6 6989909 6989910 - INDITTO 263 0.0265 (79/2979) 0 * Os_TE_207612 Os_TE_207612 Chr6 6989907 6989906 + INDITTO 263 0.0265 (79/2978) 0 * Os_TE_207613 Os_TE_207607 Chr6 6987426 6987427 - MPING 430 0.0003 (1/2987) 0 * * Os_TE_207565 Chr6 6967567 6967568 - MDR2 6967 0.1011 (302/2988) 0 * Os_TE_207564 Os_TE_207564 Chr6 6967558 6967557 - MDR2 6967 0.1007 (301/2990) 0 * Os_TE_207565 Os_TE_207561 Chr6 6966744 6966743 - COPIA2-LTR_OS 6433 0.0007 (2/2965) 0 * * Os_TE_207529 Chr6 6956522 6956521 + STOWAWAY51_OS 246 0.0003 (1/2996) 0 * Os_TE_207528 Os_TE_207528 Chr6 6956516 6956517 - STOWAWAY51_OS 246 0.0003 (1/2993) 0 * Os_TE_207529 Os_TE_207522 Chr6 6952501 6952502 - ORSgTERT00201216 11284 0.2419 (720/2976) 0 * * Os_TE_207513 Chr6 6952035 6952034 - MPING 430 0.0004 (1/2714) 0 * * Os_TE_207420 Chr6 6910738 6910739 - AMYLTP 383 0.0283 (84/2966) 0 * Os_TE_207419 Os_TE_207419 Chr6 6910730 6910729 + AMYLTP 383 0.0320 (80/2502) 0 * Os_TE_207420 Os_TE_207396 Chr6 6897842 6897843 - OSTE20 496 0.0214 (64/2986) 0 * Os_TE_207395 Os_TE_207395 Chr6 6897838 6897837 - OSTE20 496 0.0227 (68/2993) 0 * Os_TE_207396 Os_TE_207386 Chr6 6894823 6894824 - SC-3_LTR 5748 0.0003 (1/2982) 0 * Os_TE_207385 Os_TE_207385 Chr6 6894819 6894818 + ORSiTERTOOT00296 5553 0.0003 (1/2988) 0 * Os_TE_207386 Os_TE_207383 Chr6 6893962 6893961 + TRUNCATOR2_LTR 2904 0.2995 (893/2982) 0 * * Os_TE_207379 Chr6 6889542 6889543 + RIREX_LTR 8828 0.0003 (1/2998) 0 * Os_TE_207378 Os_TE_207378 Chr6 6889538 6889537 - RIREX_LTR 8828 0.0003 (1/2998) 0 * Os_TE_207379 Os_TE_207377 Chr6 6888614 6888613 - GYPSO_LTR 9828 0.3995 (1195/2991) 0 * * Os_TE_207327 Chr6 6869840 6869841 + F770 284 0.0228 (68/2983) 0 * Os_TE_207326 Os_TE_207326 Chr6 6869838 6869837 - F770 284 0.0235 (70/2982) 0 * Os_TE_207327 Os_TE_207296 Chr6 6858860 6858861 - MPING 430 0.0222 (66/2972) 0 * Os_TE_207295 Os_TE_207295 Chr6 6858858 6858857 + MPING 430 0.0219 (65/2967) 0 * Os_TE_207296 Os_TE_207262 Chr6 6851172 6851173 - AMYLTP 383 0.0899 (267/2970) 0 * Os_TE_207261 Os_TE_207261 Chr6 6851164 6851163 + AMYLTP 383 0.0849 (251/2957) 0 * Os_TE_207262 Os_TE_207243 Chr6 6845692 6845691 + NDNA1TNA_OS 334 0.0930 (278/2989) 0 * * Os_TE_207242 Chr6 6845358 6845359 + ORSiTERTOOT00296 5553 0.0003 (1/2979) 0 * Os_TE_207241 Os_TE_207241 Chr6 6845354 6845353 - SC-3_LTR 5748 0.0003 (1/2985) 0 * Os_TE_207242 Os_TE_207227 Chr6 6841216 6841217 + SPMLIKE 10989 0.0003 (1/2983) 0 * Os_TE_207226 Os_TE_207226 Chr6 6841214 6841213 - ORSgTETN00200001 10994 0.0003 (1/2982) 0 * Os_TE_207227 Os_TE_207206 Chr6 6834923 6834922 - BAJIELTR 4500 0.0017 (5/2865) 0 * * Os_TE_207167 Chr6 6808472 6808473 - TRUNCATOR2_LTR 2904 0.0007 (2/2968) 0 * Os_TE_207166 Os_TE_207166 Chr6 6808468 6808467 + ORSiCMCM00100019 2717 0.0007 (2/2976) 0 * Os_TE_207167 Os_TE_207107 Chr6 6783117 6783118 + F569 228 0.0402 (120/2988) 0 * Os_TE_207106 Os_TE_207106 Chr6 6783115 6783114 - F569 228 0.0415 (124/2991) 0 * Os_TE_207107 Os_TE_207105 Chr6 6783105 6783106 - ORSiTETNOOT00200 3563 0.0007 (2/2995) 0 * Os_TE_207104 Os_TE_207104 Chr6 6783098 6783097 + TWIFBIG 3567 0.0007 (2/2931) 0 * Os_TE_207105 Os_TE_207101 Chr6 6776942 6771707 + SZ-62LTR 3649 0.6422 (1838/2862) 1 Intact * Os_TE_207089 Chr6 6768662 6768050 - DS-RICE2N 613 0.6290 (1870/2973) 1 Intact Os_TE_207088 Os_TE_207088 Chr6 6768050 6768662 + DS-RICE2N 613 0.6340 (1897/2992) 1 Intact Os_TE_207089 Os_TE_207086 Chr6 6767437 6767438 - TYPEU 362 0.0010 (3/2997) 0 * Os_TE_207085 Os_TE_207085 Chr6 6767429 6767428 - ORSgTEMT03000049 380 0.0017 (5/2994) 0 * Os_TE_207086 Os_TE_207034 Chr6 6744586 6744587 - RIREX_LTR 8828 0.0003 (1/2985) 0 * Os_TE_207033 Os_TE_207033 Chr6 6744582 6744581 + RIREX_LTR 8828 0.0003 (1/2977) 0 * Os_TE_207034 Os_TE_207009 Chr6 6735744 6735745 + RIREX_LTR 8828 0.0003 (1/2982) 0 * * Os_TE_206982 Chr6 6722675 6722676 - HARB-1_OS 5166 0.0108 (32/2952) 0 * Os_TE_206981 Os_TE_206981 Chr6 6722673 6722672 + HARB-1_OS 5166 0.0105 (31/2953) 0 * Os_TE_206982 Os_TE_206976 Chr6 6715800 6715801 + NDNA1TNA_OS 334 0.1347 (402/2984) 0 * Os_TE_206975 Os_TE_206975 Chr6 6715798 6715797 - NDNA1TNA_OS 334 0.1364 (407/2983) 0 * Os_TE_206976 Os_TE_206970 Chr6 6713851 6713850 - CLOUD 734 0.0834 (248/2972) 0 * * Os_TE_206957 Chr6 6710743 6710744 - ORSgTEMT00901723 248 0.0801 (239/2985) 0 * * Os_TE_206956 Chr6 6709946 6709945 + ORSgTEMT00900053 249 0.0827 (246/2974) 0 * * Os_TE_206953 Chr6 6709024 6709025 + F804 170 0.0014 (4/2956) 0 * * Os_TE_206950 Chr6 6708886 6708887 + MERMITED 1572 0.0017 (5/2969) 0 * Os_TE_206949 Os_TE_206949 Chr6 6708881 6708880 - MERMITEJ 1498 0.0020 (6/2970) 0 * Os_TE_206950 Os_TE_206921 Chr6 6699420 6699419 - STOWAWAY51_OS 246 0.0010 (3/2959) 0 * Os_TE_206920 Os_TE_206920 Chr6 6699417 6699418 - STOWAWAY51_OS 246 0.0007 (2/2947) 0 * Os_TE_206921 Os_TE_206919 Chr6 6698753 6698754 - SC-3_LTR 5748 0.0010 (3/2993) 0 * Os_TE_206918 Os_TE_206918 Chr6 6698749 6698748 + ORSiTERTOOT00296 5553 0.0010 (3/2994) 0 * Os_TE_206919 Os_TE_206916 Chr6 6696276 6696275 + RPO_OS 1983 0.0015 (4/2584) 0 * * Os_TE_206891 Chr6 6687776 6687777 + MPING 430 0.0235 (70/2981) 0 * Os_TE_206890 Os_TE_206890 Chr6 6687774 6687773 - MPING 430 0.0242 (72/2974) 0 * Os_TE_206891 Os_TE_206875 Chr6 6684030 6684029 + COPI2_LTR 4733 0.0003 (1/2996) 0 * * Os_TE_206869 Chr6 6682497 6682496 + TNR2A 152 0.0157 (47/2995) 0 * * Os_TE_206866 Chr6 6681646 6681647 - RETROSAT4_LTR 13504 0.0018 (5/2725) 0 * Os_TE_206865 Os_TE_206865 Chr6 6681642 6681641 + RETROSAT4_LTR 13504 0.0011 (3/2721) 0 * Os_TE_206866 Os_TE_206856 Chr6 6676330 6676331 + ORSgTEMT02400014 229 0.0239 (71/2968) 0 * * Os_TE_206843 Chr6 6674311 6674312 + OSTE20 496 0.0243 (71/2920) 0 * Os_TE_206842 Os_TE_206842 Chr6 6674307 6674306 - OSTE20 496 0.0267 (78/2923) 0 * Os_TE_206843 Os_TE_206827 Chr6 6667662 6667663 - COPIA2-LTR_OS 6433 0.0007 (2/2990) 0 * Os_TE_206826 Os_TE_206826 Chr6 6667658 6667657 + COPIA2-LTR_OS 6433 0.0007 (2/2991) 0 * Os_TE_206827 Os_TE_206801 Chr6 6658695 6658696 + ENSPM6_OS 9815 0.0044 (13/2946) 0 * Os_TE_206800 Os_TE_206800 Chr6 6658693 6658692 - ENSPM5_OS 9581 0.0051 (15/2944) 0 * Os_TE_206801 Os_TE_206798 Chr6 6658320 6658321 - SZ-62LTR 3649 0.0004 (1/2759) 0 * Os_TE_206797 Os_TE_206797 Chr6 6658316 6658315 + SZ-62LTR 3649 0.0004 (1/2733) 0 * Os_TE_206798 Os_TE_206783 Chr6 6649511 6649512 - MPING 430 0.0003 (1/2970) 0 * Os_TE_206782 Os_TE_206782 Chr6 6649509 6649508 + MPING 430 0.0003 (1/2967) 0 * Os_TE_206783 Os_TE_206678 Chr6 6613483 6613484 + ORSgTEMT01601122 212 0.0004 (1/2778) 0 * * Os_TE_206676 Chr6 6612502 6612503 + MPING 430 0.0003 (1/2992) 0 * Os_TE_206675 Os_TE_206675 Chr6 6612500 6612499 - MPING 430 0.0003 (1/2986) 0 * Os_TE_206676 Os_TE_206657 Chr6 6604847 6604848 + ORSgTETNOOT00738 262 0.2316 (683/2949) 0 * * Os_TE_206650 Chr6 6604429 6604430 - ORSgTEMT01900024 348 0.0007 (2/2968) 0 * * Os_TE_206614 Chr6 6588746 6588745 + TRUNCATOR 2918 0.0286 (85/2968) 0 * Os_TE_206613 Os_TE_206613 Chr6 6588745 6588746 - TRUNCATOR 2918 0.0285 (85/2980) 0 * Os_TE_206614 Os_TE_206592 Chr6 6584340 6584339 + ORSiTERTOOT00074 4935 0.0013 (4/2976) 0 * * Os_TE_206587 Chr6 6582862 6582863 + MPING 430 0.0003 (1/2992) 0 * Os_TE_206586 Os_TE_206586 Chr6 6582860 6582859 - MPING 430 0.0003 (1/2985) 0 * Os_TE_206587 Os_TE_206544 Chr6 6566496 6566495 - MUDRN1_OS 764 0.0308 (92/2985) 0 * * Os_TE_206536 Chr6 6561245 6561244 - OsSN3 183 0.0024 (7/2969) 0 * * Os_TE_206509 Chr6 6552388 6552389 + EnSpm-13_OS 11171 0.0014 (4/2946) 0 * Os_TE_206508 Os_TE_206508 Chr6 6552386 6552385 - EnSpm-13_OS 11171 0.0014 (4/2944) 0 * Os_TE_206509 Os_TE_206498 Chr6 6548336 6548337 + ORSgTEMT00501902 144 0.0979 (290/2962) 0 * * Os_TE_206472 Chr6 6538865 6538864 - MERMITE18C 1473 0.0207 (61/2950) 0 * * Os_TE_206470 Chr6 6538072 6538073 + RETROSAT2LTR 12796 0.0003 (1/2998) 0 * Os_TE_206469 Os_TE_206469 Chr6 6538070 6538069 - RETROSAT2LTR 12796 0.0003 (1/2998) 0 * Os_TE_206470 Os_TE_206458 Chr6 6532777 6532776 + ORSgTEMT01700513 151 0.0925 (276/2985) 0 * Os_TE_206457 Os_TE_206457 Chr6 6532773 6532774 + ORSgTEMT01700702 154 0.0915 (273/2983) 0 * Os_TE_206458 Os_TE_206455 Chr6 6532290 6532291 + ORSgTEMT01601122 212 0.1214 (363/2989) 0 * * Os_TE_206448 Chr6 6531628 6531627 + MDM2 312 0.0004 (1/2229) 0 * * Os_TE_206441 Chr6 6530382 6530383 - STOWAWAY51_OS 246 0.0833 (247/2966) 0 * * Os_TE_206432 Chr6 6529353 6529354 - MDR2 6967 0.0886 (256/2890) 0 * Os_TE_206431 Os_TE_206431 Chr6 6529345 6529344 - MDR2 6967 0.0346 (93/2686) 0 * Os_TE_206432 Os_TE_206416 Chr6 6523218 6523217 - CRATA 4786 0.0037 (11/2936) 0 * * Os_TE_206376 Chr6 6511904 6511905 + TNR2 157 0.0003 (1/2984) 0 * * Os_TE_206374 Chr6 6509510 6509511 - DS-RICE4N 715 0.5234 (1564/2988) 0 * Os_TE_206373 Os_TE_206373 Chr6 6509503 6509502 - JOUZHENA 607 0.5113 (1510/2953) 0 * Os_TE_206374 Os_TE_206368 Chr6 6508136 6508137 - SC-3_LTR 5748 0.0003 (1/2985) 0 * Os_TE_206367 Os_TE_206367 Chr6 6508132 6508131 + ORSiTERTOOT00296 5553 0.0003 (1/2983) 0 * Os_TE_206368 Os_TE_206365 Chr6 6507097 6507098 - SC-8_LTR 4951 0.0003 (1/2989) 0 * Os_TE_206364 Os_TE_206364 Chr6 6507093 6507092 + SC-8_LTR 4951 0.0003 (1/2987) 0 * Os_TE_206365 Os_TE_206351 Chr6 6501383 6501384 + MPING 430 0.0375 (98/2613) 0 * Os_TE_206350 Os_TE_206350 Chr6 6501381 6501380 - MPING 430 0.0375 (98/2616) 0 * Os_TE_206351 Os_TE_206307 Chr6 6488808 6488807 + TWIFB1 3737 0.0018 (5/2852) 0 * * Os_TE_206305 Chr6 6486827 6486828 - HARB-1_OS 5166 0.0003 (1/2994) 0 * Os_TE_206304 Os_TE_206304 Chr6 6486825 6486824 + HARB-1_OS 5166 0.0003 (1/2990) 0 * Os_TE_206305 Os_TE_206302 Chr6 6484813 6484814 - ORSgTEMT01800052 396 0.5189 (1548/2983) 0.06 * Os_TE_206301 Os_TE_206301 Chr6 6484809 6484808 - ECR 394 0.5184 (1547/2984) 0 * Os_TE_206302 Os_TE_206296 Chr6 6479493 6479492 - STOWAWAY1_OS 149 0.0017 (5/2999) 0 * Os_TE_206295 Os_TE_206295 Chr6 6479492 6479493 + ORSgTEMT01702111 154 0.0017 (5/2998) 0 * Os_TE_206296 Os_TE_206294 Chr6 6478188 6478187 + ORSgTETNOOT00032 218 0.0298 (89/2986) 0 * * Os_TE_206292 Chr6 6477370 6477371 - ORSiTETNOOT00200 3563 0.0804 (216/2685) 0 * Os_TE_206291 Os_TE_206291 Chr6 6477363 6477362 + ORSiTETNOOT00170 3566 0.0695 (186/2676) 0 * Os_TE_206292 Os_TE_206257 Chr6 6456907 6456906 + STOWAWAY11_OS 292 0.5216 (1548/2968) 0 * * Os_TE_206255 Chr6 6456456 6456457 - MuDR4_OS 7610 0.0145 (43/2966) 0 * Os_TE_206254 Os_TE_206254 Chr6 6456449 6456448 - MuDR4_OS 7610 0.0125 (37/2958) 0 * Os_TE_206255 Os_TE_206249 Chr6 6452662 6452663 + ORSiTERTOOT00028 8600 0.0007 (2/2993) 0 * Os_TE_206248 Os_TE_206248 Chr6 6452658 6452657 - TRUNCATOR2_LTR 2904 0.0007 (2/2995) 0 * Os_TE_206249 Os_TE_206235 Chr6 6448855 6448856 + MuDR2_OS 6770 0.0034 (10/2972) 0 * Os_TE_206234 Os_TE_206234 Chr6 6448846 6448845 - MuDR2_OS 6770 0.0034 (10/2969) 0 * Os_TE_206235 Os_TE_206230 Chr6 6447931 6447932 - RETRO2_LTR 12874 0.0038 (11/2925) 0 * Os_TE_206229 Os_TE_206229 Chr6 6447927 6447926 + RETRO2A_LTR 12895 0.0054 (16/2978) 0 * Os_TE_206230 Os_TE_206225 Chr6 6444348 6444349 - CLOUD-3 550 0.0045 (9/1980) 0 * * Os_TE_206218 Chr6 6438931 6438932 + ORSgTEMT01701104 154 0.0365 (109/2990) 0 * Os_TE_206217 Os_TE_206217 Chr6 6438928 6438927 + ORSgTEMT01700044 149 0.0351 (105/2995) 0 * Os_TE_206218 Os_TE_206205 Chr6 6435741 6435740 + ORSgTEMT01601122 212 0.0351 (105/2988) 0 * * Os_TE_206204 Chr6 6435316 6435317 - TYPEM 227 0.0024 (7/2886) 0 * Os_TE_206203 Os_TE_206203 Chr6 6435315 6435314 - ORSgTEMT02400179 221 0.0025 (7/2792) 0 * Os_TE_206204 Os_TE_206190 Chr6 6427193 6427192 + TRSA_OS 353 0.0010 (3/2890) 0 * * Os_TE_206174 Chr6 6418989 6418988 + NDNA1TNA_OS 334 0.0345 (103/2984) 0 * * Os_TE_206173 Chr6 6418757 6418758 + HARB-1_OS 5166 0.2683 (800/2982) 0 * Os_TE_206172 Os_TE_206172 Chr6 6418755 6418754 - HARB-1_OS 5166 0.2716 (811/2986) 0 * Os_TE_206173 Os_TE_206170 Chr6 6418372 6418373 + MERMITEA 1710 0.0351 (104/2962) 0 * Os_TE_206169 Os_TE_206169 Chr6 6418364 6418363 + MERMITEA 1710 0.0347 (103/2965) 0 * Os_TE_206170 Os_TE_206167 Chr6 6418075 6418074 + CASLET 354 0.0329 (96/2921) 0 * * Os_TE_206161 Chr6 6417006 6417007 - ORSgTEMT00901723 248 0.0017 (5/2998) 0 * * Os_TE_206158 Chr6 6416188 6416189 - INDITTO 263 0.0003 (1/2969) 0 * Os_TE_206157 Os_TE_206157 Chr6 6416186 6416185 + INDITTO 263 0.0003 (1/2982) 0 * Os_TE_206158 Os_TE_206150 Chr6 6401497 6401498 + ORSiTERTOOT00296 5553 0.0007 (2/2993) 0 * Os_TE_206149 Os_TE_206149 Chr6 6401493 6401492 - SC-3_LTR 5748 0.0010 (3/2992) 0 * Os_TE_206150 Os_TE_206133 Chr6 6395338 6395339 - COPIA2-LTR_OS 6433 0.0003 (1/2980) 0 * Os_TE_206132 Os_TE_206132 Chr6 6395334 6395333 + COPIA2-LTR_OS 6433 0.0003 (1/2979) 0 * Os_TE_206133 Os_TE_206122 Chr6 6390489 6390490 + F569 228 0.0003 (1/2947) 0 * * Os_TE_206116 Chr6 6388501 6388502 - TRUNCATOR2_LTR 2904 0.5712 (1709/2992) 0 * Os_TE_206115 Os_TE_206115 Chr6 6388497 6388496 + ORSiTERTOOT00028 8600 0.5491 (1582/2881) 0 * Os_TE_206116 Os_TE_206106 Chr6 6383852 6383853 + TRUNCATOR2_LTR 2904 0.0003 (1/2957) 0 * Os_TE_206105 Os_TE_206105 Chr6 6383848 6383847 - TRUNCATOR2_LTR 2904 0.0007 (2/2956) 0 * Os_TE_206106 Os_TE_206100 Chr6 6381945 6381946 + RETROSAT4_LTR 13504 0.5954 (1729/2904) 0 * * Os_TE_206098 Chr6 6381631 6380057 + CACTA-B 1103 0.3611 (1071/2966) 1 Intact Os_TE_206097 Os_TE_206097 Chr6 6380055 6381628 + ORSgTETN00200005 1121 0.3600 (1065/2958) 1 Intact Os_TE_206098 Os_TE_206082 Chr6 6376663 6376664 + RETROSAT2LTR 12796 0.0014 (4/2899) 0 * * Os_TE_206068 Chr6 6368732 6368731 - STOWAWAY44_OS 240 0.0050 (15/2992) 0 * Os_TE_206067 Os_TE_206067 Chr6 6368729 6368730 + STOWAWAY44_OS 240 0.0050 (15/2988) 0 * Os_TE_206068 Os_TE_206064 Chr6 6368028 6368027 - COPIA2-LTR_OS 6433 0.0005 (1/1846) 0 * * Os_TE_206061 Chr6 6367313 6367312 + ORSgTEMT04800085 366 0.6415 (1922/2996) 0 * * Os_TE_206041 Chr6 6356704 6356705 - MPING 430 0.0433 (124/2863) 0 * Os_TE_206040 Os_TE_206040 Chr6 6356702 6356701 + MPING 430 0.0437 (125/2862) 0 * Os_TE_206041 Os_TE_206035 Chr6 6356088 6356089 + RIRE2_LTR 11306 0.0294 (88/2994) 0 * * Os_TE_206032 Chr6 6355579 6355580 + COPI2_LTR 4733 0.0003 (1/2985) 0 * Os_TE_206031 Os_TE_206031 Chr6 6355575 6355574 - COPI2_LTR 4733 0.0003 (1/2988) 0 * Os_TE_206032 Os_TE_206024 Chr6 6353226 6353225 - RETROSAT4_LTR 13504 0.6350 (1879/2959) 0 * * Os_TE_206021 Chr6 6350844 6350845 - RETROSAT2LTR 12796 0.0004 (1/2607) 0 * * Os_TE_206013 Chr6 6350163 6350164 - ORSgTETNOOT01607 258 0.6038 (1762/2918) 0 * * Os_TE_205999 Chr6 6345736 6345737 - SC-3_LTR 5748 0.0003 (1/2966) 0 * Os_TE_205998 Os_TE_205998 Chr6 6345732 6345731 + ORSiTERTOOT00296 5553 0.0003 (1/2972) 0 * Os_TE_205999 Os_TE_205994 Chr6 6343669 6343668 - RETRO2_LTR 12874 0.0035 (10/2893) 0 * * Os_TE_205990 Chr6 6342132 6342133 - ORSgTETN00200001 10994 0.0040 (12/2993) 0 * * Os_TE_205987 Chr6 6341862 6341863 - ORSiTERT00200154 9386 0.6704 (1900/2834) 0 * Os_TE_205986 Os_TE_205986 Chr6 6341856 6341855 + TRUNCATOR 2918 0.6555 (1954/2981) 0 * Os_TE_205987 Os_TE_205985 Chr6 6341855 6341856 - TRUNCATOR 2918 0.6708 (1903/2837) 0 * * Os_TE_205971 Chr6 6331975 6331976 - ORSgTETNOOT01501 171 0.6726 (1878/2792) 0 * * Os_TE_205968 Chr6 6330956 6330955 + ORSgTETNOOT01846 238 0.0003 (1/2948) 0 * Os_TE_205967 Os_TE_205967 Chr6 6330952 6330953 + STOWAWAY17_OS 259 0.0014 (4/2948) 0 * Os_TE_205968 Os_TE_205966 Chr6 6330487 6330488 + RIRE5-LTR_OS 6427 0.0010 (3/2991) 0 * Os_TE_205965 Os_TE_205965 Chr6 6330480 6330479 - RIRE5-LTR_OS 6427 0.0010 (3/2994) 0 * Os_TE_205966 Os_TE_205932 Chr6 6311655 6311547 + SINE1OS 127 0.3176 (945/2975) 1 Intact * Os_TE_205910 Chr6 6303820 6303819 - COPIA2-LTR_OS 6433 0.0007 (2/2984) 0 * * Os_TE_205888 Chr6 6299593 6299592 + ORSgTETNOOT00032 218 0.0010 (3/2987) 0 * * Os_TE_205883 Chr6 6295594 6295593 + RIRE2_LTR 11306 0.0288 (86/2991) 0 * * Os_TE_205879 Chr6 6294929 6294930 - OLO24 345 0.0050 (15/2980) 0 * Os_TE_205878 Os_TE_205878 Chr6 6294927 6294926 + OLO24 345 0.0050 (15/2990) 0 * Os_TE_205879 Os_TE_205876 Chr6 6294131 6294132 + SPMLIKE 10989 0.0399 (119/2986) 0 * Os_TE_205875 Os_TE_205875 Chr6 6294129 6294128 - ORSgTETN00200001 10994 0.0110 (32/2910) 0 * Os_TE_205876 Os_TE_205873 Chr6 6293430 6293431 + RETRO2A_LTR 12895 0.0789 (235/2980) 0 * Os_TE_205872 Os_TE_205872 Chr6 6293426 6293425 - RETRO1_LTR 8314 0.0790 (236/2986) 0 * Os_TE_205873 Os_TE_205871 Chr6 6293234 6293235 + COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * Os_TE_205870 Os_TE_205870 Chr6 6293230 6293229 - COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * Os_TE_205871 Os_TE_205861 Chr6 6288508 6288509 + AMYLTP 383 0.0299 (40/1337) -1 * * Os_TE_205842 Chr6 6279931 6279932 - COPIA2-LTR_OS 6433 0.0007 (2/2990) 0 * Os_TE_205841 Os_TE_205841 Chr6 6279927 6279926 + COPIA2-LTR_OS 6433 0.0007 (2/2989) 0 * Os_TE_205842 Os_TE_205816 Chr6 6266321 6266322 + STOWAWAY51_OS 246 0.0003 (1/2892) 0 * * Os_TE_205795 Chr6 6257887 6257888 - CACTA-H 1152 0.0010 (3/2995) 0 * Os_TE_205794 Os_TE_205794 Chr6 6257885 6257884 + CACTA-H 1152 0.0007 (2/2988) 0 * Os_TE_205795 Os_TE_205783 Chr6 6249195 6249196 + GYPSY-A_LTR 8951 0.0007 (2/2996) 0 * Os_TE_205782 Os_TE_205782 Chr6 6249191 6249190 - SZ-40LTR 2465 0.0010 (3/2994) 0 * Os_TE_205783 Os_TE_205768 Chr6 6243476 6243475 + MERMITE18E 1528 0.0010 (3/2982) 0 * * Os_TE_205766 Chr6 6243249 6243248 + MuDR3_OS 8604 0.0300 (89/2969) 0 * * Os_TE_205764 Chr6 6240963 6240964 - ORSiTERTOOT00367 5639 0.0120 (36/2997) 0 * Os_TE_205763 Os_TE_205763 Chr6 6240959 6240958 + ORSiTERTOOT00367 5639 0.0117 (35/2997) 0 * Os_TE_205764 Os_TE_205762 Chr6 6238374 6238375 + SC-7_LTR 4431 0.0231 (69/2982) 0 * Os_TE_205761 Os_TE_205761 Chr6 6238370 6238369 - SC-7_LTR 4431 0.0225 (67/2983) 0 * Os_TE_205762 Os_TE_205731 Chr6 6232465 6232466 - OSLINE1-4 4779 0.5987 (1789/2988) 0 * * Os_TE_205724 Chr6 6228430 6228429 + ORSgTEMT01601122 212 0.0010 (3/2996) 0 * Os_TE_205723 Os_TE_205723 Chr6 6228427 6228428 + ORSgTEMT01601122 212 0.0010 (3/2995) 0 * Os_TE_205724 Os_TE_205716 Chr6 6225914 6225915 + OSTE33 1012 0.0301 (85/2820) 0 * Os_TE_205715 Os_TE_205715 Chr6 6225905 6225904 + OSTE33 1012 0.0337 (95/2821) 0 * Os_TE_205716 Os_TE_205698 Chr6 6219089 6219088 - STOWAWAY51_OS 246 0.0003 (1/2982) 0 * Os_TE_205697 Os_TE_205697 Chr6 6219083 6219084 + STOWAWAY51_OS 246 0.0003 (1/2972) 0 * Os_TE_205698 Os_TE_205664 Chr6 6212282 6212281 - RETROFIT5_LTR 4785 0.2317 (693/2991) 0 * * Os_TE_205660 Chr6 6211948 6211947 - TYPEM 227 0.0183 (55/2998) 0 * * Os_TE_205657 Chr6 6211164 6211165 + COPIA2-LTR_OS 6433 0.0007 (2/2988) 0 * Os_TE_205656 Os_TE_205656 Chr6 6211160 6211159 - COPIA2-LTR_OS 6433 0.0007 (2/2991) 0 * Os_TE_205657 Os_TE_205640 Chr6 6204429 6204673 + ORSgTETNOOT01791 245 0.3104 (808/2603) 1 Intact * Os_TE_205633 Chr6 6202680 6202679 + ORSgTEMT00500133 127 0.0029 (8/2762) 0 * * Os_TE_205628 Chr6 6199186 6199187 - RIREX_LTR 8828 0.0003 (1/2996) 0 * * Os_TE_205605 Chr6 6195754 6195563 + EXPLORER 210 0.5036 (1415/2810) 1 Intact * Os_TE_205600 Chr6 6193484 6193485 - SZ-40LTR 2465 0.0261 (55/2105) 0 * * Os_TE_205599 Chr6 6191299 6191298 - ORSgTETNOOT00118 134 0.5130 (1538/2998) 0 * * Os_TE_205597 Chr6 6191102 6191103 + MDR2 6967 0.1440 (431/2993) 0 * Os_TE_205596 Os_TE_205596 Chr6 6191094 6191093 + MDR2 6967 0.1466 (439/2995) 0 * Os_TE_205597 Os_TE_205595 Chr6 6190988 6190989 - INDITTO 263 0.5100 (1524/2988) 0 * Os_TE_205594 Os_TE_205594 Chr6 6190986 6190985 + INDITTO 263 0.5120 (1534/2996) 0 * Os_TE_205595 Os_TE_205588 Chr6 6188809 6188808 + SETARIA2 1142 0.4968 (1483/2985) 0 * * Os_TE_205582 Chr6 6188396 6188634 + ORSgTEMT01602181 239 0.2701 (808/2992) 1 Intact * Os_TE_205581 Chr6 6188343 6188342 - ORSgTEMT00901363 251 0.3501 (1046/2988) 0 * * Os_TE_205580 Chr6 6188187 6188188 - MPING 430 0.0007 (2/2997) 0 * Os_TE_205579 Os_TE_205579 Chr6 6188185 6188184 + MPING 430 0.0007 (2/2995) 0 * Os_TE_205580 Os_TE_205576 Chr6 6187780 6188017 + DITAILA 257 0.6693 (2004/2994) 1 Intact * Os_TE_205575 Chr6 6187437 6187438 - COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_205574 Os_TE_205574 Chr6 6187433 6187432 + COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_205575 Os_TE_205557 Chr6 6182788 6182789 + ORSiTERTOOT00296 5553 0.0003 (1/2999) 0 * Os_TE_205556 Os_TE_205556 Chr6 6182784 6182783 - SC-3_LTR 5748 0.0003 (1/2999) 0 * Os_TE_205557 Os_TE_205535 Chr6 6170299 6170300 + MPING 430 0.0003 (1/2949) 0 * Os_TE_205534 Os_TE_205534 Chr6 6170297 6170296 - MPING 430 0.0003 (1/2964) 0 * Os_TE_205535 Os_TE_205530 Chr6 6169627 6169628 - DS-RICE2N 613 0.0044 (13/2977) 0 * Os_TE_205529 Os_TE_205529 Chr6 6169620 6169619 + DS-RICE4N 715 0.0047 (14/2977) 0 * Os_TE_205530 Os_TE_205527 Chr6 6168744 6168745 - AMYLTP 383 0.0045 (13/2880) 0 * Os_TE_205526 Os_TE_205526 Chr6 6168736 6168735 + AMYLTP 383 0.0042 (12/2881) 0 * Os_TE_205527 Os_TE_205507 Chr6 6163857 6164176 + OLO24 345 0.6840 (1933/2826) 1 Intact * Os_TE_205503 Chr6 6162118 6162117 - ORSgTEMT00501447 126 0.3506 (1049/2992) 0 * Os_TE_205502 Os_TE_205502 Chr6 6162116 6162117 + ORSgTEMT00500852 140 0.3523 (1055/2995) 0 * Os_TE_205503 Os_TE_205499 Chr6 6160344 6160343 - STOWAWAY51_OS 246 0.0003 (1/2992) 0 * * Os_TE_205489 Chr6 6155000 6154999 + ORSgTEMT00500852 140 0.3533 (1043/2952) 0 * Os_TE_205488 Os_TE_205488 Chr6 6154997 6154998 + ORSgTEMT00502327 143 0.3437 (1009/2936) 0 * Os_TE_205489 Os_TE_205478 Chr6 6153928 6154218 + STOWAWAY11_OS 292 0.7147 (1999/2797) 1 Intact Os_TE_205476 Os_TE_205476 Chr6 6153889 6153548 - ORSgTEMT04800063 360 0.7551 (1955/2589) 1 Intact Os_TE_205478 Os_TE_205471 Chr6 6150939 6150940 + MPING 430 0.0003 (1/2997) 0 * Os_TE_205470 Os_TE_205470 Chr6 6150937 6150936 - MPING 430 0.0003 (1/2999) 0 * Os_TE_205471 Os_TE_205462 Chr6 6144707 6144708 + ORSgTETNOOT01275 140 0.3407 (1016/2982) 0 * Os_TE_205461 Os_TE_205461 Chr6 6144705 6144704 + ORSgTETNOOT00906 136 0.3474 (1039/2991) 0 * Os_TE_205462 Os_TE_205460 Chr6 6144569 6144231 + OLO24 345 0.6702 (2006/2993) 1 Intact * Os_TE_205454 Chr6 6143243 6143391 - ORSgTEMT00500167 148 0.6669 (1988/2981) 1 Intact * Os_TE_205439 Chr6 6139480 6110828 + MERMITEA 1710 0.6475 (1846/2851) 1 Intact Os_TE_205397 Os_TE_205397 Chr6 6110826 6139480 - MERMITE18E 1528 0.6679 (1987/2975) 1 Intact Os_TE_205439 Os_TE_205395 Chr6 6110283 6110282 - ORSgTEMT01602413 239 0.3388 (1006/2969) 0 * Os_TE_205394 Os_TE_205394 Chr6 6110280 6110281 - ORSgTEMT01602350 236 0.3451 (1029/2982) 0 * Os_TE_205395 Os_TE_205380 Chr6 6101159 6101160 - COPIA2-LTR_OS 6433 0.0013 (4/2997) 0 * Os_TE_205379 Os_TE_205379 Chr6 6101155 6101154 + COPIA2-LTR_OS 6433 0.0013 (4/2996) 0 * Os_TE_205380 Os_TE_205363 Chr6 6098358 6098359 + RIREX_LTR 8828 0.0015 (3/2033) 0 * Os_TE_205362 Os_TE_205362 Chr6 6098354 6098353 - RIREX_LTR 8828 0.0012 (3/2509) 0 * Os_TE_205363 Os_TE_205335 Chr6 6082298 6082299 - ORSgTEMT02000040 196 0.0048 (14/2913) 0 * * Os_TE_205330 Chr6 6079125 6079124 - ORSgTEMT00500989 146 0.3453 (1029/2980) 0 * * Os_TE_205303 Chr6 6061655 6061400 + ORSgTETNOOT01834 251 0.2858 (854/2988) 1 Intact Os_TE_205301 Os_TE_205301 Chr6 6061406 6061649 + ORSgTETNOOT01692 249 0.2854 (853/2989) 1 Intact Os_TE_205303 Os_TE_205287 Chr6 6057062 6057063 - TNR8-21 428 0.3403 (996/2927) 0 * * Os_TE_205286 Chr6 6056897 6056898 - UNIQUE 158 0.0003 (1/2960) 0 * * Os_TE_205285 Chr6 6056508 6056509 + MDR2 6967 0.0281 (83/2952) 0 * Os_TE_205284 Os_TE_205284 Chr6 6056500 6056499 - MDR2 6967 0.0296 (88/2976) 0 * Os_TE_205285 Os_TE_205279 Chr6 6055881 6056093 + ORSgTEMT01601122 212 0.6635 (1962/2957) 1 Intact * Os_TE_205272 Chr6 6053104 6052628 + JINHUA 479 0.6649 (1962/2951) 1 Intact Os_TE_205271 Os_TE_205271 Chr6 6052628 6053103 - JINHUA 479 0.6664 (1968/2953) 1 Intact Os_TE_205272 Os_TE_205269 Chr6 6052259 6052511 - F524 291 0.6693 (1977/2954) 1 Intact * Os_TE_205268 Chr6 6051762 6051368 - ORSgTETNOOT00403 255 0.6916 (1976/2857) 1 Intact * Os_TE_205262 Chr6 6051122 6051123 - SUSU 279 0.0042 (8/1886) 0 * Os_TE_205261 Os_TE_205261 Chr6 6051120 6051119 + ORSgTEMT05000092 279 0.0032 (7/2202) 0 * Os_TE_205262 Os_TE_205222 Chr6 6024933 6024932 - ORSgTEMT02400148 214 0.0003 (1/2977) 0 * Os_TE_205221 Os_TE_205221 Chr6 6024932 6024933 - TYPEM 227 0.0003 (1/2977) 0 * Os_TE_205222 Os_TE_205200 Chr6 6016340 6016341 + ORSgTETNOOT01668 244 0.0313 (92/2936) 0 * * Os_TE_205148 Chr6 6003953 6003954 + ORSgTETNOOT00032 218 0.0044 (13/2977) 0 * * Os_TE_205115 Chr6 5998084 5998085 + ORSgTEMT00502465 144 0.0003 (1/2979) 0 * * Os_TE_205050 Chr6 5974539 5974540 + SZLTR 1249 0.0080 (24/2993) 0 * Os_TE_205049 Os_TE_205049 Chr6 5974535 5974534 - RETRO2_LTR 12874 0.0080 (24/2996) 0 * Os_TE_205050 Os_TE_205043 Chr6 5972419 5972420 - RETROSAT2LTR 12796 0.0007 (2/2917) 0 * * Os_TE_205031 Chr6 5970221 5970222 - HARB-1_OS 5166 0.0007 (2/2976) 0 * Os_TE_205030 Os_TE_205030 Chr6 5970219 5970218 + HARB-1_OS 5166 0.0007 (2/2980) 0 * Os_TE_205031 Os_TE_205025 Chr6 5965449 5970050 - SZ-22_LTR 4403 0.5817 (1730/2974) 1 Intact * Os_TE_205021 Chr6 5964746 5964745 + STOWAWAY51_OS 246 0.0050 (15/2988) 0 * * Os_TE_205009 Chr6 5963648 5963647 + ORSgTETNOOT00032 218 0.0003 (1/2928) 0 * * Os_TE_205007 Chr6 5961648 5961649 + SPMLIKE 10989 0.0335 (100/2984) 0 * Os_TE_205006 Os_TE_205006 Chr6 5961646 5961645 - ORSgTETN00200001 10994 0.0338 (101/2991) 0 * Os_TE_205007 Os_TE_204989 Chr6 5956821 5956820 - SZ-48LTR 3632 0.0003 (1/2987) 0 * * Os_TE_204988 Chr6 5955648 5955649 + RETRO1_LTR 8314 0.0007 (2/2948) 0 * Os_TE_204987 Os_TE_204987 Chr6 5955644 5955643 - RETRO1_LTR 8314 0.0007 (2/2995) 0 * Os_TE_204988 Os_TE_204977 Chr6 5952066 5952065 + CACTA-B 1103 0.0355 (106/2985) 0 * * Os_TE_204919 Chr6 5925140 5925139 - ORSgTEMT01400012 212 0.0018 (5/2785) 0 * * Os_TE_204914 Chr6 5923862 5923863 + ORSgTEMT01700715 134 0.0003 (1/2967) 0 * * Os_TE_204895 Chr6 5920090 5920089 - STOWAWAY51_OS 246 0.0003 (1/2995) 0 * Os_TE_204894 Os_TE_204894 Chr6 5920084 5920085 + STOWAWAY51_OS 246 0.0003 (1/2998) 0 * Os_TE_204895 Os_TE_204868 Chr6 5911146 5911147 - SEVERIN-2 1952 0.0379 (98/2586) 0 * * Os_TE_204867 Chr6 5911114 5909718 - SZ-44LTR 1408 0.6209 (1800/2899) 1 Intact * Os_TE_204856 Chr6 5908560 5908559 - RIRE2_LTR 11306 0.0003 (1/2998) 0 * * Os_TE_204855 Chr6 5908013 5908014 - ORSgTEMT05000076 272 0.0060 (11/1845) 0 * * Os_TE_204833 Chr6 5900436 5900624 - SNAP-OL3 189 0.6745 (1819/2697) 1 Intact * Os_TE_204825 Chr6 5897355 5898511 - CACTA-N 987 0.6047 (1767/2922) 1 Intact * Os_TE_204823 Chr6 5896839 5896838 - STOWAWAY44_OS 240 0.3926 (1128/2873) 0 * * Os_TE_204816 Chr6 5895886 5895885 + ORSgTETNOOT00908 242 0.1335 (353/2645) 0 * * Os_TE_204804 Chr6 5890541 5890542 + Mudr5_OS 5952 0.0014 (4/2945) 0 * * Os_TE_204801 Chr6 5890004 5890005 + ORSgTEMT01602181 239 0.0003 (1/2928) 0 * * Os_TE_204798 Chr6 5889595 5889594 - ORSgTEMT01800052 396 0.0003 (1/2977) 0 * * Os_TE_204775 Chr6 5886444 5886443 - ORSgTEMT00501356 145 0.0027 (8/2992) 0 * Os_TE_204774 Os_TE_204774 Chr6 5886440 5886441 + ORSgTEMT00501356 145 0.0023 (7/2995) 0 * Os_TE_204775 Os_TE_204772 Chr6 5886325 5886324 + ORSgTEMT00901422 244 0.0003 (1/2985) 0 * * Os_TE_204771 Chr6 5886151 5886150 + ORSgTETNOOT00908 242 0.0020 (6/2992) 0 * * Os_TE_204770 Chr6 5885453 5885452 + ORSiTERTOOT00226 792 0.0003 (1/2996) 0 * * Os_TE_204769 Chr6 5884687 5884686 + COWARD-3 221 0.0355 (106/2983) 0 * * Os_TE_204719 Chr6 5857309 5857308 + STOWAWAY8_OS 259 0.3829 (1144/2988) 0 * * Os_TE_204705 Chr6 5852903 5852904 - RETROSAT2LTR 12796 0.0855 (254/2970) 0 * Os_TE_204704 Os_TE_204704 Chr6 5852901 5852900 - ORSiTERT00200141 11375 0.0839 (249/2967) 0 * Os_TE_204705 Os_TE_204671 Chr6 5839422 5839423 - ORSiTEMT01300001 950 0.0224 (66/2951) 0 * * Os_TE_204668 Chr6 5839315 5839314 + TELIA 141 0.0003 (1/2877) 0 * * Os_TE_204651 Chr6 5832355 5832354 + SZ-36LTR 5825 0.0004 (1/2824) 0 * * Os_TE_204648 Chr6 5831384 5831383 - COPI2_LTR 4733 0.0003 (1/2999) 0 * * Os_TE_204604 Chr6 5813465 5813464 - INDITTO 263 0.0348 (103/2963) 0 * * Os_TE_204584 Chr6 5801393 5801392 - MuDR4_OS 7610 0.0010 (3/2996) 0 * Os_TE_204583 Os_TE_204583 Chr6 5801371 5801372 - MuDR4_OS 7610 0.0010 (3/2996) 0 * Os_TE_204584 Os_TE_204550 Chr6 5793682 5793681 - RETRO1_LTR 8314 0.0847 (252/2974) 0 * * Os_TE_204505 Chr6 5781000 5781001 + ORSgTEMT01602188 240 0.0013 (4/2976) 0 * * Os_TE_204471 Chr6 5771019 5771018 - NDNA1TNA_OS 334 0.0003 (1/2901) 0 * * Os_TE_204459 Chr6 5761958 5761959 - RIREX_LTR 8828 0.0127 (38/2988) 0 * Os_TE_204458 Os_TE_204458 Chr6 5761954 5761953 + RIREX_LTR 8828 0.0124 (37/2987) 0 * Os_TE_204459 Os_TE_204457 Chr6 5761745 5761746 + RIRE2_LTR 11306 0.0003 (1/2991) 0 * Os_TE_204456 Os_TE_204456 Chr6 5761741 5761740 - RIRE2_LTR 11306 0.0003 (1/2991) 0 * Os_TE_204457 Os_TE_204455 Chr6 5761671 5761672 - OSTONOR1_LTR 6440 0.0124 (37/2994) 0 * Os_TE_204454 Os_TE_204454 Chr6 5761667 5761666 + OSTONOR1_LTR 6440 0.0127 (38/2994) 0 * Os_TE_204455 Os_TE_204452 Chr6 5760998 5760999 + RIREX_LTR 8828 0.0003 (1/2993) 0 * Os_TE_204451 Os_TE_204451 Chr6 5760994 5760993 - RIREX_LTR 8828 0.0003 (1/2993) 0 * Os_TE_204452 Os_TE_204448 Chr6 5757468 5757469 + INDITTO 263 0.0231 (69/2992) 0 * Os_TE_204447 Os_TE_204447 Chr6 5757466 5757465 - INDITTO 263 0.0221 (66/2988) 0 * Os_TE_204448 Os_TE_204407 Chr6 5745275 5745274 + NDNA1TNA_OS 334 0.0230 (69/2994) 0 * Os_TE_204406 Os_TE_204406 Chr6 5745273 5745274 + ORSgTEMT00100531 325 0.0224 (67/2991) 0 * Os_TE_204407 Os_TE_204388 Chr6 5740445 5740444 + SZ-40LTR 2465 0.0172 (51/2966) 0 * Os_TE_204387 Os_TE_204387 Chr6 5740435 5740436 - GYPSY-A_LTR 8951 0.0180 (54/2992) 0 * Os_TE_204388 Os_TE_204373 Chr6 5731072 5731073 - RETRO2_LTR 12874 0.0004 (1/2779) 0 * * Os_TE_204363 Chr6 5729527 5729528 + GYPSY-A_LTR 8951 0.0064 (13/2029) 0 * Os_TE_204362 Os_TE_204362 Chr6 5729523 5729522 - GYPSY-A_LTR 8951 0.0070 (14/1989) 0 * Os_TE_204363 Os_TE_204355 Chr6 5727774 5727773 + ORSgTEMT00100828 349 0.0048 (14/2934) 0 * * Os_TE_204354 Chr6 5727578 5727316 + ORSgTETNOOT02406 265 0.2825 (834/2952) 1 Intact Os_TE_204352 Os_TE_204352 Chr6 5727316 5727578 + INDITTO 263 0.2860 (842/2944) 1 Intact Os_TE_204354 Os_TE_204349 Chr6 5724110 5724109 + STOWAWAY47_OS 148 0.0048 (14/2913) 0 * * Os_TE_204341 Chr6 5722489 5722488 + MERMITEB 1610 0.0054 (16/2988) 0 * * Os_TE_204333 Chr6 5721194 5721195 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_204332 Os_TE_204332 Chr6 5721190 5721189 + COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_204333 Os_TE_204313 Chr6 5713996 5713997 - COPIA2-LTR_OS 6433 0.0007 (2/2896) 0 * Os_TE_204312 Os_TE_204312 Chr6 5713992 5713991 + COPIA2-LTR_OS 6433 0.0007 (2/2897) 0 * Os_TE_204313 Os_TE_204311 Chr6 5713954 5713953 - RPO_OS 1983 0.0028 (8/2889) 0 * * Os_TE_204308 Chr6 5711855 5711856 - ORSgTEMT01601329 229 0.0007 (2/2861) 0 * * Os_TE_204307 Chr6 5711667 5711668 - MPING 430 0.0046 (13/2811) 0 * Os_TE_204306 Os_TE_204306 Chr6 5711665 5711664 + MPING 430 0.0057 (16/2785) 0 * Os_TE_204307 Os_TE_204296 Chr6 5702691 5702692 - NDNA1TNA_OS 334 0.0595 (174/2924) 0 * Os_TE_204295 Os_TE_204295 Chr6 5702689 5702688 + NDNA1TNA_OS 334 0.0601 (177/2944) 0 * Os_TE_204296 Os_TE_204293 Chr6 5701684 5701685 + SZ-62LTR 3649 0.0003 (1/2982) 0 * * Os_TE_204286 Chr6 5696646 5696898 + ORSgTEMT00901495 245 0.7396 (2000/2704) 1 Intact * Os_TE_204282 Chr6 5696354 5696612 + ORSgTETNOOT01846 238 0.6692 (1966/2938) 1 Intact * Os_TE_204279 Chr6 5696182 5696090 - ORSgTEMT01701663 106 0.6722 (1987/2956) 1 Intact * Os_TE_204269 Chr6 5694880 5694881 + TELIA 141 0.0011 (2/1854) 0 * Os_TE_204267 Os_TE_204267 Chr6 5694872 5694871 - TELIA 141 0.0011 (2/1858) 0 * Os_TE_204269 Os_TE_204261 Chr6 5693225 5694856 + MERMITE18B 1306 0.6165 (1834/2975) 1 Intact * Os_TE_204254 Chr6 5689600 5689290 + SINE03_OS 360 0.6013 (1790/2977) 1 Intact * Os_TE_204235 Chr6 5683915 5683916 + COPIA2-LTR_OS 6433 0.0171 (49/2870) 0 * Os_TE_204234 Os_TE_204234 Chr6 5683911 5683910 - COPIA2-LTR_OS 6433 0.0240 (68/2836) 0 * Os_TE_204235 Os_TE_204229 Chr6 5682717 5682716 - ORSgTEMT01702346 154 0.0003 (1/2916) 0 * * Os_TE_204218 Chr6 5675836 5675837 - COPI2_LTR 4733 0.0004 (1/2524) 0 * Os_TE_204217 Os_TE_204217 Chr6 5675832 5675831 + COPI2_LTR 4733 0.0003 (1/2966) 0 * Os_TE_204218 Os_TE_204202 Chr6 5671643 5671644 + ORSgTETNOOT01834 251 0.0936 (271/2896) 0 * Os_TE_204201 Os_TE_204201 Chr6 5671641 5671640 + ORSgTETNOOT01998 254 0.0968 (280/2894) 0 * Os_TE_204202 Os_TE_204194 Chr6 5670498 5670736 - STOWAWAY51_OS 246 0.7063 (1792/2537) 1 Intact * Os_TE_204193 Chr6 5669914 5669654 - STOWAWAY41_OS 264 0.5985 (1728/2887) 1 Intact Os_TE_204190 Os_TE_204190 Chr6 5669654 5669911 - STOWAWAY41_OS 264 0.5985 (1753/2929) 1 Intact Os_TE_204193 Os_TE_204189 Chr6 5669413 5669412 - ORSgTEMT01400014 209 0.3099 (795/2565) 0 * Os_TE_204188 Os_TE_204188 Chr6 5669410 5669411 + ORSgTEMT01400031 216 0.2489 (558/2242) 0 * Os_TE_204189 Os_TE_204187 Chr6 5668863 5668665 + COWARD-3 221 0.5436 (1389/2555) 1 Intact * Os_TE_204183 Chr6 5667988 5667989 - ORMOSIA 482 0.4237 (1243/2934) 0 * * Os_TE_204178 Chr6 5664487 5664488 + TRUNCATOR 2918 0.0011 (2/1842) 0 * * Os_TE_204170 Chr6 5659227 5659015 + ORSgTEMT01400032 215 0.5916 (1705/2882) 1 Intact Os_TE_204167 Os_TE_204167 Chr6 5658977 5659223 - ORSgTEMT01400015 213 0.5852 (1662/2840) 1 Intact Os_TE_204170 Os_TE_204160 Chr6 5655523 5655524 + MDR2 6967 0.0254 (70/2760) -1 * * Os_TE_204133 Chr6 5645678 5645443 - ORSgTEMT00900075 250 0.5312 (818/1540) 1 Intact Os_TE_204128 Os_TE_204128 Chr6 5645441 5645678 + ORSgTEMT00901309 238 0.2632 (765/2907) 1 Intact Os_TE_204133 Os_TE_204114 Chr6 5638268 5638267 + TNR2A 152 0.1379 (130/943) 0 * * Os_TE_204112 Chr6 5636426 5636425 + NDNA2TNA_OS 346 0.6191 (1723/2783) 0 * Os_TE_204111 Os_TE_204111 Chr6 5636419 5636420 - NDNA2TNA_OS 346 0.6458 (1918/2970) 0 * Os_TE_204112 Os_TE_204106 Chr6 5636038 5636039 - NDNA2TNA_OS 346 0.1526 (450/2948) 0 * Os_TE_204105 Os_TE_204105 Chr6 5636036 5636035 + NDNA2TNA_OS 346 0.1570 (470/2994) 0 * Os_TE_204106 Os_TE_204102 Chr6 5633358 5633124 + ORSgTEMT01601934 207 0.3655 (1080/2955) 1 Intact Os_TE_204101 Os_TE_204101 Chr6 5633124 5633356 - ORSgTEMT01601493 303 0.4055 (1088/2683) 1 Intact Os_TE_204102 Os_TE_204099 Chr6 5632580 5632581 + RIREX_LTR 8828 0.0291 (86/2957) 0 * Os_TE_204098 Os_TE_204098 Chr6 5632576 5632575 - RIREX_LTR 8828 0.0293 (87/2965) 0 * Os_TE_204099 Os_TE_204075 Chr6 5628071 5627845 + STOWAWAY51_OS 246 0.3359 (796/2370) 1 Intact * Os_TE_204063 Chr6 5621193 5621194 - STOWAWAY12_OS 312 0.0012 (1/855) 0 * * Os_TE_204062 Chr6 5621052 5621053 - TYPEM 227 0.7363 (2203/2992) 0 * * Os_TE_204058 Chr6 5617732 5617733 + ORSiTERTOOT00226 792 0.0031 (9/2917) 0 * Os_TE_204057 Os_TE_204057 Chr6 5617728 5617727 - SZ-22_LTR 4403 0.0039 (9/2323) 0 * Os_TE_204058 Os_TE_204055 Chr6 5615443 5615444 + COPI2_LTR 4733 0.0003 (1/2988) 0 * * Os_TE_204048 Chr6 5612593 5612594 + RETROSAT4_LTR 13504 0.0054 (16/2957) 0 * Os_TE_204047 Os_TE_204047 Chr6 5612589 5612588 - SZ-35LTR 3853 0.0064 (19/2949) 0 * Os_TE_204048 Os_TE_204043 Chr6 5612057 5608169 + JOUZHEN 596 0.6494 (1854/2855) 1 Intact Os_TE_204042 Os_TE_204042 Chr6 5608169 5612057 - JOUZHEN 596 0.6537 (1884/2882) 1 Intact Os_TE_204043 Os_TE_204038 Chr6 5605187 5605188 - NDNA2TNA_OS 346 0.0323 (96/2968) 0 * Os_TE_204037 Os_TE_204037 Chr6 5605182 5605181 + NDNA2TNA_OS 346 0.0310 (92/2965) 0 * Os_TE_204038 Os_TE_204033 Chr6 5601717 5601716 + ORSgTEMT01601591 242 0.0003 (1/2942) 0 * * Os_TE_204019 Chr6 5597196 5597197 + TEMPINDAS 4259 0.0003 (1/2965) 0 * Os_TE_204018 Os_TE_204018 Chr6 5597193 5597192 - TEMPINDAS 4259 0.0003 (1/2953) 0 * Os_TE_204019 Os_TE_204005 Chr6 5588243 5588244 + TWIF 586 0.0005 (1/2066) 0 * * Os_TE_204004 Chr6 5588151 5588152 - INDITTO 263 0.0003 (1/2922) 0 * * Os_TE_203979 Chr6 5574126 5574458 + ORSgTEMT00100694 349 0.8037 (2399/2985) 1 Intact * Os_TE_203977 Chr6 5572700 5572699 - RETRO1_LTR 8314 0.0505 (151/2991) 0 * Os_TE_203976 Os_TE_203976 Chr6 5572698 5572699 + RETRO2A_LTR 12895 0.0497 (149/2995) 0 * Os_TE_203977 Os_TE_203968 Chr6 5568536 5568537 - RIREX_LTR 8828 0.0003 (1/2943) 0 * Os_TE_203967 Os_TE_203967 Chr6 5568532 5568531 + RIREX_LTR 8828 0.0003 (1/2945) 0 * Os_TE_203968 Os_TE_203966 Chr6 5568204 5568205 + SZ-62LTR 3649 0.0003 (1/2934) 0 * Os_TE_203965 Os_TE_203965 Chr6 5568200 5568199 - SZ-62LTR 3649 0.0003 (1/2938) 0 * Os_TE_203966 Os_TE_203964 Chr6 5568062 5568063 - RETRO2_LTR 12874 0.1407 (415/2950) 0 * Os_TE_203963 Os_TE_203963 Chr6 5568058 5568057 + RETRO2_LTR 12874 0.1371 (403/2939) 0 * Os_TE_203964 Os_TE_203956 Chr6 5563982 5563983 + COPIA2-LTR_OS 6433 0.0003 (1/2979) 0 * Os_TE_203955 Os_TE_203955 Chr6 5563978 5563977 - COPIA2-LTR_OS 6433 0.0003 (1/2975) 0 * Os_TE_203956 Os_TE_203943 Chr6 5551241 5551242 - RETRO1_LTR 8314 0.0003 (1/2971) 0 * Os_TE_203942 Os_TE_203942 Chr6 5551237 5551236 + RETRO2_LTR 12874 0.0003 (1/2971) 0 * Os_TE_203943 Os_TE_203935 Chr6 5549695 5549696 - AMYLTP 383 0.0030 (9/2954) 0 * Os_TE_203934 Os_TE_203934 Chr6 5549687 5549686 - AMYLTP 383 0.0027 (8/2952) 0 * Os_TE_203935 Os_TE_203933 Chr6 5549240 5549241 - NDNA1TNA_OS 334 0.0003 (1/2937) 0 * Os_TE_203932 Os_TE_203932 Chr6 5549238 5549237 + NDNA1TNA_OS 334 0.0003 (1/2938) 0 * Os_TE_203933 Os_TE_203924 Chr6 5548719 5548718 - STOWAWAY51_OS 246 0.0004 (1/2847) 0 * * Os_TE_203923 Chr6 5548580 5548579 - COPI2_LTR 4733 0.0003 (1/2949) 0 * * Os_TE_203922 Chr6 5548006 5548007 - ORSiOTOT00000037 220 0.0003 (1/2984) 0 * * Os_TE_203920 Chr6 5547936 5547935 + SPMLIKE 10989 0.0007 (2/2983) 0 * * Os_TE_203903 Chr6 5544439 5544438 + ORSgTEMT01602029 239 0.0034 (10/2960) 0 * * Os_TE_203894 Chr6 5543544 5543543 - INDITTO 263 0.0004 (1/2570) 0 * * Os_TE_203805 Chr6 5518505 5518506 - MuDR2_OS 6770 0.0007 (2/2982) 0 * * Os_TE_203780 Chr6 5516129 5516130 - RETROSAT2LTR 12796 0.0003 (1/2999) 0 * * Os_TE_203769 Chr6 5513488 5513489 - SZ-22_LTR 4403 0.0003 (1/2992) 0 * Os_TE_203768 Os_TE_203768 Chr6 5513482 5513481 + ORSiTERTOOT00226 792 0.0003 (1/2993) 0 * Os_TE_203769 Os_TE_203724 Chr6 5489840 5489839 - ORSgTERT00200139 1329 0.0005 (1/1908) 0 * * Os_TE_203723 Chr6 5488351 5488352 - HATOS1 3488 0.0010 (3/2993) 0 * Os_TE_203722 Os_TE_203722 Chr6 5488344 5488343 + QINNIU 528 0.0010 (3/2993) 0 * Os_TE_203723 Os_TE_203717 Chr6 5487020 5487019 + SZ-55_LTR 10318 0.0003 (1/2985) 0 * * Os_TE_203681 Chr6 5471933 5471932 + TWIFB1 3737 0.0007 (2/2877) 0 * * Os_TE_203677 Chr6 5466883 5466884 - SC-3_LTR 5748 0.0003 (1/2981) 0 * * Os_TE_203667 Chr6 5462587 5462586 + ORSiTERTOOT00296 5553 0.0003 (1/2970) 0 * * Os_TE_203661 Chr6 5460732 5460733 + MPING 430 0.0003 (1/2980) 0 * Os_TE_203660 Os_TE_203660 Chr6 5460730 5460729 - MPING 430 0.0003 (1/2975) 0 * Os_TE_203661 Os_TE_203651 Chr6 5456172 5456171 + ORSgTETNOOT00544 147 0.0003 (1/2986) 0 * * Os_TE_203557 Chr6 5420783 5419475 - OSTE33 1012 0.8956 (2299/2567) 1 Intact * Os_TE_203536 Chr6 5411926 5411927 + AMYLTP 383 0.0025 (7/2839) 0 * Os_TE_203535 Os_TE_203535 Chr6 5411919 5411918 - AMYLTP 383 0.0011 (3/2831) 0 * Os_TE_203536 Os_TE_203522 Chr6 5407707 5407708 - SC-8_LTR 4951 0.0088 (26/2946) 0 * Os_TE_203521 Os_TE_203521 Chr6 5407703 5407702 + SC-8_LTR 4951 0.0092 (27/2948) 0 * Os_TE_203522 Os_TE_203488 Chr6 5392060 5392059 + RIREX_LTR 8828 0.0004 (1/2857) 0 * * Os_TE_203459 Chr6 5380645 5380646 - MPING 430 0.0003 (1/2952) 0 * Os_TE_203458 Os_TE_203458 Chr6 5380643 5380642 + MPING 430 0.0003 (1/2956) 0 * Os_TE_203459 Os_TE_203414 Chr6 5369423 5369424 + STOWAWAY44_OS 240 0.0003 (1/2875) 0 * * Os_TE_203384 Chr6 5359013 5359014 - TELIA 141 0.0013 (4/2973) 0 * Os_TE_203383 Os_TE_203383 Chr6 5359005 5359004 + TELIA 141 0.0010 (3/2972) 0 * Os_TE_203384 Os_TE_203357 Chr6 5353234 5353233 - RIREX_LTR 8828 0.0030 (9/2980) 0 * * Os_TE_203347 Chr6 5351256 5351257 + COPIA2-LTR_OS 6433 0.0007 (2/2728) 0 * * Os_TE_203345 Chr6 5349614 5349615 - SZ-22_LTR 4403 0.0007 (2/2988) 0 * * Os_TE_203340 Chr6 5349020 5349021 + ORSgTETNOOT02316 263 0.0004 (1/2668) 0 * Os_TE_203339 Os_TE_203339 Chr6 5349018 5349017 - INDITTO 263 0.0004 (1/2621) 0 * Os_TE_203340 Os_TE_203333 Chr6 5344063 5344062 + ORSgTETNOOT00908 242 0.0027 (8/2992) 0 * * Os_TE_203322 Chr6 5341042 5341043 - ORSgTEMT00901138 254 0.0003 (1/2942) 0 * * Os_TE_203281 Chr6 5320593 5320592 - RETRO2_LTR 12874 0.0024 (7/2876) 0 * * Os_TE_203276 Chr6 5319473 5319474 + ORSgTETNOOT00221 261 0.0038 (10/2619) 0 * Os_TE_203275 Os_TE_203275 Chr6 5319471 5319470 - ORSgTETNOOT00053 263 0.1356 (405/2986) 0 * Os_TE_203276 Os_TE_203233 Chr6 5311679 5311678 + STOWAWAY51_OS 246 0.0003 (1/2994) 0 * Os_TE_203232 Os_TE_203232 Chr6 5311673 5311674 + ORSgTEMT01601591 242 0.0003 (1/2992) 0 * Os_TE_203233 Os_TE_203183 Chr6 5301536 5301537 - NDNA1TNA_OS 334 0.0023 (7/2988) 0 * Os_TE_203182 Os_TE_203182 Chr6 5301533 5301532 + NDNA1TNA_OS 334 0.0020 (6/2991) 0 * Os_TE_203183 Os_TE_203164 Chr6 5296939 5296940 - SC-3_LTR 5748 0.0003 (1/2994) 0 * Os_TE_203163 Os_TE_203163 Chr6 5296935 5296934 + ORSiTERTOOT00296 5553 0.0003 (1/2993) 0 * Os_TE_203164 Os_TE_203155 Chr6 5292209 5292210 + SC-8_LTR 4951 0.0010 (3/2919) 0 * * Os_TE_203095 Chr6 5269340 5269341 - MUDRN3_OS 903 0.0010 (3/2993) 0 * Os_TE_203094 Os_TE_203094 Chr6 5269332 5269331 + MUDRN2_OS 756 0.0010 (3/2993) 0 * Os_TE_203095 Os_TE_203055 Chr6 5261016 5261017 + NDNA1TNA_OS 334 0.0013 (4/2979) 0 * Os_TE_203054 Os_TE_203054 Chr6 5261014 5261013 - NDNA1TNA_OS 334 0.0013 (4/2978) 0 * Os_TE_203055 Os_TE_203053 Chr6 5260201 5260202 + ORSgTEMT00600272 361 0.0013 (4/2994) 0 * Os_TE_203052 Os_TE_203052 Chr6 5260196 5260195 + ORSgTEMT00600376 329 0.0013 (4/2991) 0 * Os_TE_203053 Os_TE_203013 Chr6 5252734 5252735 + ORSgTEMT03000039 377 0.0003 (1/2955) 0 * * Os_TE_203006 Chr6 5252136 5252135 + MPING 430 0.0212 (63/2976) 0 * * Os_TE_203003 Chr6 5252029 5252030 - MPING 430 0.0193 (57/2950) 0 * * Os_TE_203002 Chr6 5251993 5251994 - INDITTO 263 0.0010 (3/2991) 0 * Os_TE_203001 Os_TE_203001 Chr6 5251991 5251990 + INDITTO 263 0.0014 (4/2934) 0 * Os_TE_203002 Os_TE_202996 Chr6 5250568 5250569 - SZ-55_LTR 10318 0.0003 (1/2998) 0 * Os_TE_202995 Os_TE_202995 Chr6 5250564 5250563 + SZ-55_LTR 10318 0.0003 (1/2998) 0 * Os_TE_202996 Os_TE_202980 Chr6 5239739 5239740 + F569 228 0.0033 (10/2990) 0 * Os_TE_202979 Os_TE_202979 Chr6 5239737 5239736 - F569 228 0.0033 (10/2988) 0 * Os_TE_202980 Os_TE_202926 Chr6 5214029 5214030 + ORSgTETNOOT00032 218 0.0034 (10/2943) 0 * * Os_TE_202897 Chr6 5206198 5206199 + SPMLIKE 10989 0.0003 (1/2990) 0 * Os_TE_202896 Os_TE_202896 Chr6 5206196 5206195 - ORSgTETN00200001 10994 0.0003 (1/2983) 0 * Os_TE_202897 Os_TE_202874 Chr6 5201645 5201646 + GYPSY-A_LTR 8951 0.0007 (2/2997) 0 * Os_TE_202873 Os_TE_202873 Chr6 5201641 5201640 - GYPSY-A_LTR 8951 0.0007 (2/2994) 0 * Os_TE_202874 Os_TE_202870 Chr6 5199503 5199502 - MPING 430 0.0003 (1/2986) 0 * * Os_TE_202811 Chr6 5174814 5174815 + COPI2_LTR 4733 0.0300 (87/2902) 0 * Os_TE_202810 Os_TE_202810 Chr6 5174810 5174809 - COPI2_LTR 4733 0.0594 (112/1886) 0 * Os_TE_202811 Os_TE_202807 Chr6 5174338 5174339 + ORSgTEMT00600502 360 0.0004 (1/2640) 0 * Os_TE_202806 Os_TE_202806 Chr6 5174336 5174335 - ORSgTEMT00600085 364 0.0004 (1/2630) 0 * Os_TE_202807 Os_TE_202805 Chr6 5174244 5174245 + ORSgTEMT00901844 250 0.0042 (11/2633) 0 * * Os_TE_202791 Chr6 5172098 5172099 - RETRO2_LTR 12874 0.0010 (3/2970) 0 * * Os_TE_202755 Chr6 5158124 5158125 + CASTAWAY 364 0.1911 (568/2972) 0 * Os_TE_202754 Os_TE_202754 Chr6 5158122 5158121 - ORSgTEMT00600085 364 0.1963 (587/2991) 0 * Os_TE_202755 Os_TE_202750 Chr6 5157038 5156792 + STOWAWAY51_OS 246 0.8665 (2590/2989) 1 Intact Os_TE_202748 Os_TE_202748 Chr6 5156792 5157035 - STOWAWAY51_OS 246 0.8682 (2582/2974) 1 Intact Os_TE_202750 Os_TE_202733 Chr6 5154219 5154220 + STOWAWAY10_OS 259 0.0020 (6/2952) 0 * * Os_TE_202730 Chr6 5152848 5152849 + ORSgTETNOOT01834 251 0.0359 (100/2787) 0 * Os_TE_202729 Os_TE_202729 Chr6 5152846 5152845 + ORSgTETNOOT01834 251 0.0337 (95/2821) 0 * Os_TE_202730 Os_TE_202720 Chr6 5151866 5151670 + STOWAWAY43_OS 233 0.8873 (2567/2893) 1 Intact * Os_TE_202659 Chr6 5139860 5139861 - ORSgTEMT01400014 209 0.0004 (1/2516) 0 * * Os_TE_202631 Chr6 5133180 5133181 + ORSgTEMT01601591 242 0.0004 (1/2508) 0 * * Os_TE_202625 Chr6 5131635 5131485 + ORSgTEMT00500512 153 0.8703 (2496/2868) 1 Intact * Os_TE_202621 Chr6 5130834 5130833 + OLO24 345 0.1360 (406/2986) 0 * * Os_TE_202620 Chr6 5129546 5129547 - ORSgTEMT01602404 253 0.1359 (406/2987) 0 * * Os_TE_202614 Chr6 5127128 5122841 - SEVERIN-2 1952 0.8389 (2145/2557) 1 Intact * Os_TE_202612 Chr6 5126336 5126335 + ORSgTEMT00300063 413 0.0026 (5/1894) 0 * * Os_TE_202598 Chr6 5122699 5122700 + OSTE33 1012 0.0322 (96/2981) 0 * Os_TE_202597 Os_TE_202597 Chr6 5122690 5122689 - OSTE33 1012 0.0275 (82/2977) 0 * Os_TE_202598 Os_TE_202595 Chr6 5122314 5122315 + ORSgTEMT01601367 239 0.1380 (411/2979) 0 * * Os_TE_202592 Chr6 5120827 5120826 + ORSgTEMT00501279 126 0.1339 (399/2979) 0 * * Os_TE_202589 Chr6 5119833 5119832 - ORSgTETNOOT01930 140 0.0007 (2/2915) 0 * * Os_TE_202588 Chr6 5119488 5119487 + JINHUA 479 0.1417 (423/2985) 0 * * Os_TE_202586 Chr6 5117888 5117889 + STOWAWAY18_OS 216 0.0191 (57/2990) 0 * Os_TE_202585 Os_TE_202585 Chr6 5117887 5117886 - STOWAWAY18_OS 216 0.0210 (63/2997) 0 * Os_TE_202586 Os_TE_202579 Chr6 5116982 5117325 + OLO24B 335 0.8669 (2554/2946) 1 Intact * Os_TE_202566 Chr6 5112321 5112322 + RPO_OS 1983 0.0008 (2/2368) 0 * * Os_TE_202553 Chr6 5108950 5108951 - RETROSAT4_LTR 13504 0.0146 (38/2606) 0 * Os_TE_202552 Os_TE_202552 Chr6 5108946 5108945 + RETROSAT4_LTR 13504 0.0142 (37/2604) 0 * Os_TE_202553 Os_TE_202544 Chr6 5108267 5108266 + ORSiTERTOOT00226 792 0.0004 (1/2616) 0 * * Os_TE_202543 Chr6 5106236 5106235 - ORSgTEMT00900563 246 0.0264 (78/2949) 0 * * Os_TE_202542 Chr6 5105806 5105807 - INDITTO 263 0.0114 (34/2982) 0 * Os_TE_202541 Os_TE_202541 Chr6 5105804 5105803 + INDITTO 263 0.0120 (36/2994) 0 * Os_TE_202542 Os_TE_202492 Chr6 5091345 5091344 - COPIA2-LTR_OS 6433 0.0003 (1/2960) 0 * * Os_TE_202491 Chr6 5090668 5090669 - STOWAWAY51_OS 246 0.1461 (422/2888) 0 * * Os_TE_202472 Chr6 5088082 5088083 - ORSgTEMT00100950 335 0.0004 (1/2447) 0 * * Os_TE_202458 Chr6 5085190 5085189 - ORSgTEMT00901138 254 0.0134 (33/2458) 0 * * Os_TE_202453 Chr6 5084134 5084133 + COPI2_LTR 4733 0.0012 (3/2489) 0 * * Os_TE_202413 Chr6 5072795 5072794 + ORSgTEMT00502094 140 0.1708 (505/2956) 0 * * Os_TE_202412 Chr6 5072706 5072707 + ORSgTEMT00500133 127 0.1717 (507/2952) 0 * * Os_TE_202392 Chr6 5069885 5069884 - ORSgTEMT01400014 209 0.1706 (500/2930) 0 * * Os_TE_202387 Chr6 5068082 5068083 - JOUZHENA 607 0.0097 (28/2883) 0 * * Os_TE_202386 Chr6 5068010 5068011 - ORSgTEMT01400006 213 0.0287 (85/2959) 0 * * Os_TE_202379 Chr6 5060022 5060021 + ORSgTEMT01602181 239 0.0007 (2/2986) 0 * Os_TE_202378 Os_TE_202378 Chr6 5060019 5060020 + ORSgTEMT01601934 207 0.0007 (2/2839) 0 * Os_TE_202379 Os_TE_202374 Chr6 5057842 5057843 - COPIA2-LTR_OS 6433 0.0004 (1/2815) 0 * * Os_TE_202372 Chr6 5057535 5057536 + RIREX_LTR 8828 0.0010 (3/2876) 0 * Os_TE_202371 Os_TE_202371 Chr6 5057531 5057530 - RIREX_LTR 8828 0.0010 (3/2891) 0 * Os_TE_202372 Os_TE_202367 Chr6 5056874 5056875 - MERMITE18B 1306 0.0028 (6/2154) 0 * * Os_TE_202364 Chr6 5054804 5054805 + ORSgTEMT00600055 361 0.1508 (452/2998) 0 * Os_TE_202363 Os_TE_202363 Chr6 5054801 5054800 - ORSgTEMT00600085 364 0.1462 (438/2996) 0 * Os_TE_202364 Os_TE_202362 Chr6 5053808 5053809 - STOWAWAY11_OS 292 0.0020 (6/2927) 0 * * Os_TE_202355 Chr6 5051402 5051403 - STOWAWAY51_OS 246 0.0003 (1/2983) 0 * * Os_TE_202354 Chr6 5051305 5051304 - ORSgTEMT00901723 248 0.1984 (591/2979) 0 * * Os_TE_202349 Chr6 5050534 5050535 - ORSgTETNOOT01930 140 0.0040 (12/2994) 0 * * Os_TE_202348 Chr6 5050116 5050117 - AMYLTP 383 0.0323 (96/2972) 0 * Os_TE_202347 Os_TE_202347 Chr6 5050108 5050107 + AMYLTP 383 0.0330 (98/2973) 0 * Os_TE_202348 Os_TE_202346 Chr6 5050057 5050058 + ORSgTETNOOT00908 242 0.0003 (1/2979) 0 * Os_TE_202345 Os_TE_202345 Chr6 5050055 5050054 - ORSgTETNOOT00908 242 0.0003 (1/2976) 0 * Os_TE_202346 Os_TE_202341 Chr6 5048131 5048130 - RIREX_LTR 8828 0.0007 (1/1442) -1 * * Os_TE_202331 Chr6 5046689 5046688 + ORSgTEMT00600502 360 0.0003 (1/2978) 0 * * Os_TE_202306 Chr6 5041134 5041135 + GYPSO_LTR 9828 0.0004 (1/2383) 0 * * Os_TE_202292 Chr6 5031618 5031617 + INDITTO 263 0.0003 (1/2980) 0 * * Os_TE_202273 Chr6 5021417 5021418 - ORSgTEMT00502359 149 0.0003 (1/2960) 0 * * Os_TE_202228 Chr6 4999755 4999756 - SC-4_LTR 5218 0.0117 (34/2906) 0 * * Os_TE_202226 Chr6 4999053 4999054 + ORSgTEMT00100828 349 0.0147 (43/2928) 0 * * Os_TE_202216 Chr6 4995341 4995342 + TRUNCATOR2_LTR 2904 0.0022 (6/2785) 0 * Os_TE_202215 Os_TE_202215 Chr6 4995337 4995336 - TRUNCATOR2_LTR 2904 0.0022 (6/2771) 0 * Os_TE_202216 Os_TE_202206 Chr6 4992864 4992865 - ORSgTEMT02000040 196 0.0054 (16/2943) 0 * * Os_TE_202198 Chr6 4990456 4990455 - NDNA1TNA_OS 334 0.0340 (101/2970) 0 * * Os_TE_202185 Chr6 4988863 4988862 - SUSU 279 0.0027 (8/2990) 0 * * Os_TE_202183 Chr6 4988710 4988711 + ORSgTEMT00600272 361 0.0003 (1/2935) 0 * * Os_TE_202176 Chr6 4987533 4987532 + NDNA1TNA_OS 334 0.0017 (5/2986) 0 * Os_TE_202175 Os_TE_202175 Chr6 4987526 4987527 - NDNA1TNA_OS 334 0.0020 (6/2984) 0 * Os_TE_202176 Os_TE_202169 Chr6 4986682 4986683 + RETRO2A_LTR 12895 0.1589 (438/2757) 0 * Os_TE_202168 Os_TE_202168 Chr6 4986678 4986677 - RETRO1_LTR 8314 0.1553 (426/2743) 0 * Os_TE_202169 Os_TE_202164 Chr6 4985112 4985111 + CACTA-B 1103 0.0114 (34/2982) 0 * * Os_TE_202153 Chr6 4983688 4983926 + ORSgTEMT01602181 239 0.8341 (2258/2707) 1 Intact * Os_TE_202138 Chr6 4972277 4972278 - MPING 430 0.1796 (535/2979) 0 * Os_TE_202137 Os_TE_202137 Chr6 4972275 4972274 + MPING 430 0.1442 (430/2981) 0 * Os_TE_202138 Os_TE_202135 Chr6 4972085 4972086 + ORSgTEMT01400018 210 0.0020 (6/2977) 0 * * Os_TE_202133 Chr6 4971129 4971130 + RETRO2A_LTR 12895 0.0003 (1/2950) 0 * Os_TE_202132 Os_TE_202132 Chr6 4971125 4971124 - RETRO1_LTR 8314 0.0003 (1/2968) 0 * Os_TE_202133 Os_TE_202107 Chr6 4922509 4922510 - MDR2 6967 0.0107 (32/2991) 0 * * Os_TE_202103 Chr6 4921457 4921458 - ORSgTETN00200001 10994 0.0003 (1/2992) 0 * Os_TE_202102 Os_TE_202102 Chr6 4921455 4921454 + SPMLIKE 10989 0.0003 (1/2991) 0 * Os_TE_202103 Os_TE_202098 Chr6 4920606 4920607 + ORSgTEMT01601591 242 0.0010 (3/2997) 0 * * Os_TE_202091 Chr6 4917413 4917160 + ORSgTETNOOT01834 251 0.0864 (258/2987) 1 Intact * Os_TE_202081 Chr6 4916145 4916144 - ORSgTEMT02000004 195 0.5088 (1509/2966) 0 * * Os_TE_202072 Chr6 4901185 4914324 - SZLTR 1249 0.5941 (1767/2974) 1 Intact * Os_TE_202057 Chr6 4889526 4889525 + COPIA2-LTR_OS 6433 0.0011 (3/2728) 0 * * Os_TE_202055 Chr6 4888252 4888253 - AMYLTP 383 0.3753 (1119/2982) 0 * Os_TE_202054 Os_TE_202054 Chr6 4888244 4888243 + AMYLTP 383 0.3244 (910/2805) 0 * Os_TE_202055 Os_TE_202053 Chr6 4887937 4887938 - COPI2_LTR 4733 0.0007 (2/2989) 0 * Os_TE_202052 Os_TE_202052 Chr6 4887933 4887932 + COPI2_LTR 4733 0.0007 (2/2990) 0 * Os_TE_202053 Os_TE_202032 Chr6 4883106 4883107 - HATOS1 3488 0.0078 (23/2938) 0 * * Os_TE_202029 Chr6 4882804 4882803 - HARB-1_OS 5166 0.0010 (3/2990) 0 * * Os_TE_202020 Chr6 4881613 4881401 - ORSgTEMT01400011 212 0.7498 (2173/2898) 1 Intact * Os_TE_202012 Chr6 4880720 4880721 + ORSgTEMT00100291 345 0.0003 (1/2964) 0 * * Os_TE_201961 Chr6 4862714 4862715 - RIRE2_LTR 11306 0.0067 (20/2985) 0 * Os_TE_201960 Os_TE_201960 Chr6 4862710 4862709 - ORSgTERT00201216 11284 0.0060 (18/2991) 0 * Os_TE_201961 Os_TE_201954 Chr6 4860658 4860659 + ORSiTERTOOT00020 2547 0.1479 (436/2947) 0 * Os_TE_201953 Os_TE_201953 Chr6 4860654 4860653 - OSCOPIA1_LTR 4754 0.1500 (443/2954) 0 * Os_TE_201954 Os_TE_201941 Chr6 4859050 4859051 - RIRE2_LTR 11306 0.0024 (7/2978) 0 * Os_TE_201940 Os_TE_201940 Chr6 4859046 4859045 + RIRE2_LTR 11306 0.0024 (7/2975) 0 * Os_TE_201941 Os_TE_201934 Chr6 4857742 4857743 + CACTA-I 1124 0.0023 (7/2979) 0 * Os_TE_201933 Os_TE_201933 Chr6 4857740 4857739 - CACTA-M 1129 0.0027 (8/2966) 0 * Os_TE_201934 Os_TE_201921 Chr6 4854526 4854525 + TWIF 586 0.0004 (1/2238) 0 * * Os_TE_201917 Chr6 4850832 4850833 - SC-3_LTR 5748 0.0772 (230/2980) 0 * Os_TE_201916 Os_TE_201916 Chr6 4850828 4850827 + ORSiTERTOOT00296 5553 0.0779 (232/2979) 0 * Os_TE_201917 Os_TE_201881 Chr6 4831084 4831085 + COPI2_LTR 4733 0.0118 (35/2973) 0 * Os_TE_201880 Os_TE_201880 Chr6 4831080 4831079 - COPI2_LTR 4733 0.0115 (33/2858) 0 * Os_TE_201881 Os_TE_201836 Chr6 4812843 4812842 - ORSgTETNOOT01048 233 0.0023 (7/2991) 0 * * Os_TE_201789 Chr6 4793110 4793111 - RIREX_LTR 8828 0.0022 (2/923) 0 * * Os_TE_201756 Chr6 4782177 4778168 + RETROSAT4_LTR 13504 0.6601 (1886/2857) 1 Solo_LTR Os_TE_201754 Os_TE_201754 Chr6 4778168 4782177 - RETROSAT4_LTR 13504 0.6829 (2039/2986) 1 Solo_LTR Os_TE_201756 Os_TE_201748 Chr6 4775510 4775511 + ORSgTEMT01601591 242 0.0007 (2/2980) 0 * * Os_TE_201743 Chr6 4772091 4772092 - ORSiTERT00100080 6173 0.0027 (8/2993) 0 * * Os_TE_201742 Chr6 4771979 4771978 + ORSiTERT00100080 6173 0.0027 (8/2995) 0 * * Os_TE_201737 Chr6 4769418 4769419 - RETROSAT2LTR 12796 0.0573 (171/2986) 0 * * Os_TE_201704 Chr6 4748719 4748720 - ENSPM_OS 9843 0.0020 (6/2973) 0 * Os_TE_201703 Os_TE_201703 Chr6 4748717 4748716 + ENSPM_OS 9843 0.0020 (6/2980) 0 * Os_TE_201704 Os_TE_201691 Chr6 4744129 4744130 - RIRE3A_LTR 10580 0.2241 (670/2990) 0 * Os_TE_201690 Os_TE_201690 Chr6 4744125 4744124 + ORSiTERTOOT00027 10853 0.2255 (674/2989) 0 * Os_TE_201691 Os_TE_201674 Chr6 4731189 4731188 - AMYLTP 383 0.0114 (34/2991) 0 * * Os_TE_201663 Chr6 4728646 4728428 - TYPEM 227 0.0817 (242/2961) 1 Intact Os_TE_201662 Os_TE_201662 Chr6 4728425 4728642 - ORSgTEMT02400246 177 0.0819 (242/2955) 1 Intact Os_TE_201663 Os_TE_201651 Chr6 4727638 4727639 - STOWAWAY51_OS 246 0.0004 (1/2755) 0 * * Os_TE_201618 Chr6 4720351 4720352 - ORSgTEMT06100010 269 0.2386 (699/2929) 0 * Os_TE_201617 Os_TE_201617 Chr6 4720349 4720348 + ORSgTEMT06100010 269 0.2346 (688/2933) 0 * Os_TE_201618 Os_TE_201601 Chr6 4717028 4717029 + COPIA2-LTR_OS 6433 0.0003 (1/2979) 0 * Os_TE_201600 Os_TE_201600 Chr6 4717024 4717023 - COPIA2-LTR_OS 6433 0.0003 (1/2977) 0 * Os_TE_201601 Os_TE_201599 Chr6 4715518 4715517 + NDNA2TNA_OS 346 0.1883 (562/2985) 0 * * Os_TE_201598 Chr6 4715512 4715513 - NDNA2TNA_OS 346 0.1552 (446/2874) 0 * Os_TE_201597 Os_TE_201597 Chr6 4715511 4715510 + NDNA2TNA_OS 346 0.1837 (546/2973) 0 * Os_TE_201598 Os_TE_201596 Chr6 4715485 4715486 - NDNA1TNA_OS 334 0.0393 (117/2979) 0 * * Os_TE_201593 Chr6 4713644 4713645 + SC-8_LTR 4951 0.0003 (1/2982) 0 * Os_TE_201592 Os_TE_201592 Chr6 4713640 4713639 - SC-8_LTR 4951 0.0003 (1/2979) 0 * Os_TE_201593 Os_TE_201589 Chr6 4712581 4712582 + ORSiTERTOOT00296 5553 0.0013 (4/2989) 0 * Os_TE_201588 Os_TE_201588 Chr6 4712577 4712576 - SC-3_LTR 5748 0.0010 (3/2964) 0 * Os_TE_201589 Os_TE_201583 Chr6 4709896 4709897 + ENSPM3_OS 10837 0.0003 (1/2982) 0 * * Os_TE_201574 Chr6 4708983 4708982 + MUDRN1_OS 764 0.1082 (239/2208) 0 * * Os_TE_201558 Chr6 4704906 4704905 + ORSgTETNOOT00908 242 0.0003 (1/2901) 0 * * Os_TE_201555 Chr6 4703967 4703968 - ORSgTEMT02400246 177 0.0011 (3/2625) 0 * * Os_TE_201534 Chr6 4692712 4692711 - SZ-COM 1308 0.0003 (1/2961) 0 * * Os_TE_201505 Chr6 4676619 4676620 - ORSgTEMT02400179 221 0.0885 (265/2995) 0 * Os_TE_201504 Os_TE_201504 Chr6 4676618 4676617 - TYPEM 227 0.0885 (265/2995) 0 * Os_TE_201505 Os_TE_201464 Chr6 4659615 4659616 + ORSiTERTOOT00074 4935 0.0023 (7/2985) 0 * * Os_TE_201462 Chr6 4658884 4658885 - RETRO2_LTR 12874 0.0281 (83/2953) 0 * Os_TE_201461 Os_TE_201461 Chr6 4658880 4658879 + RETRO2_LTR 12874 0.0275 (81/2943) 0 * Os_TE_201462 Os_TE_201429 Chr6 4647385 4647386 - TOUNJ-30 377 0.0027 (8/2980) 0 * * Os_TE_201397 Chr6 4638599 4638600 - OSTE20 496 0.1091 (324/2971) 0 * Os_TE_201396 Os_TE_201396 Chr6 4638595 4638594 - OSTE20 496 0.1101 (327/2971) 0 * Os_TE_201397 Os_TE_201384 Chr6 4626569 4626570 + SZ-62LTR 3649 0.0027 (8/2992) 0 * Os_TE_201383 Os_TE_201383 Chr6 4626565 4626564 - SZ-62LTR 3649 0.0027 (8/2989) 0 * Os_TE_201384 Os_TE_201370 Chr6 4624462 4624463 + RIREX_LTR 8828 0.0034 (5/1483) 0 * * Os_TE_201367 Chr6 4624350 4624349 - COPIA2-LTR_OS 6433 0.0006 (1/1629) 0 * * Os_TE_201366 Chr6 4624163 4624162 - ORSgTEMT01601432 239 0.0265 (70/2643) 0 * Os_TE_201365 Os_TE_201365 Chr6 4624160 4624161 + ORSgTEMT01602181 239 0.0286 (76/2654) 0 * Os_TE_201366 Os_TE_201358 Chr6 4620107 4619770 + ORSgTEMT00101674 340 0.1752 (523/2985) 1 Intact Os_TE_201356 Os_TE_201356 Chr6 4619771 4620104 + NDNA1TNA_OS 334 0.1621 (478/2948) 1 Intact Os_TE_201358 Os_TE_201346 Chr6 4616546 4616547 - ORSgTEMT01600223 220 0.0006 (1/1611) 0 * * Os_TE_201344 Chr6 4616499 4616498 - ORSgTEMT01601208 238 0.0109 (6/551) 0 * * Os_TE_201333 Chr6 4610530 4610531 - SZ-9LTR 965 0.8003 (2373/2965) 0 * * Os_TE_201329 Chr6 4608475 4608474 + RPO_OS 1983 0.7726 (1818/2353) 0 * * Os_TE_201328 Chr6 4608250 4608251 + ORSgTETNOOT01834 251 0.0359 (92/2561) 0 * Os_TE_201327 Os_TE_201327 Chr6 4608248 4608247 + ORSgTETNOOT01834 251 0.0359 (106/2953) 0 * Os_TE_201328 Os_TE_201325 Chr6 4602319 4602318 + ORSgTEMT01600300 235 0.8206 (2429/2960) 0 * Os_TE_201324 Os_TE_201324 Chr6 4602315 4602316 + ORSgTEMT01602580 283 0.8185 (2404/2937) 0 * Os_TE_201325 Os_TE_201322 Chr6 4601656 4602009 + SINE03_OS 360 0.2031 (603/2969) 1 Intact * Os_TE_201311 Chr6 4597609 4597610 - RETRO2_LTR 12874 0.5235 (1558/2976) 0 * * Os_TE_201300 Chr6 4593699 4593838 + ORSgTEMT00501356 145 0.4781 (1431/2993) 1 Intact * Os_TE_201299 Chr6 4593549 4593548 + ORSgTEMT00500476 150 0.5649 (1689/2990) 0 * Os_TE_201298 Os_TE_201298 Chr6 4593547 4593548 + ORSgTEMT00501027 149 0.5684 (1703/2996) 0 * Os_TE_201299 Os_TE_201292 Chr6 4592186 4591816 + ORSgTEMT04800085 366 0.4822 (1436/2978) 1 Intact Os_TE_201288 Os_TE_201288 Chr6 4591816 4592185 - ORSgTEMT04800063 360 0.5247 (1435/2735) 1 Intact Os_TE_201292 Os_TE_201282 Chr6 4587246 4587247 + ORSgTERT00201441 428 0.0003 (1/2966) 0 * * Os_TE_201269 Chr6 4583828 4583829 - RIRE3_LTR 12054 0.1242 (182/1465) 0 * Os_TE_201268 Os_TE_201268 Chr6 4583824 4583823 + RIRE3_LTR 12054 0.0619 (184/2973) 0 * Os_TE_201269 Os_TE_201262 Chr6 4583132 4581620 + ATLANTYS-LTR_OS 13740 0.4404 (1304/2961) 1 Solo_LTR Os_TE_201259 Os_TE_201259 Chr6 4581620 4583132 - ATLANTYS-LTR_OS 13740 0.4467 (1329/2975) 1 Solo_LTR Os_TE_201262 Os_TE_201249 Chr6 4576793 4576792 - TELIA 141 0.0018 (4/2221) 0 * * Os_TE_201231 Chr6 4569123 4567693 + ORSgTETN00200005 1121 0.7423 (1985/2674) 1 Intact Os_TE_201229 Os_TE_201229 Chr6 4567691 4569120 + CACTA-B 1103 0.7564 (2149/2841) 1 Intact Os_TE_201231 Os_TE_201224 Chr6 4565778 4565779 - COPIA2-LTR_OS 6433 0.0004 (1/2856) 0 * Os_TE_201223 Os_TE_201223 Chr6 4565774 4565773 + COPIA2-LTR_OS 6433 0.0004 (1/2853) 0 * Os_TE_201224 Os_TE_201214 Chr6 4562140 4562141 + TRUNCATOR 2918 0.0011 (3/2697) 0 * * Os_TE_201179 Chr6 4542019 4542018 - AMYLTP 383 0.0352 (103/2922) 0 * * Os_TE_201065 Chr6 4496196 4496197 - GYPSY-A_LTR 8951 0.0004 (1/2630) 0 * * Os_TE_201064 Chr6 4495482 4495483 - ORSgTEMT01600639 228 0.0023 (6/2627) 0 * * Os_TE_201003 Chr6 4465272 4464933 - ORSgTEMT01900024 348 0.2454 (391/1593) 1 Intact Os_TE_201001 Os_TE_201001 Chr6 4464933 4465272 - ORSgTEMT01900052 340 0.2045 (387/1892) 1 Intact Os_TE_201003 Os_TE_200992 Chr6 4459864 4459865 - COPIA2-LTR_OS 6433 0.0198 (8/404) 0 * Os_TE_200991 Os_TE_200991 Chr6 4459861 4459860 + COPIA2-LTR_OS 6433 0.0174 (7/403) 0 * Os_TE_200992 Os_TE_200975 Chr6 4451072 4449666 - SZ-10LTR 1412 0.7936 (396/499) 1 Intact * Os_TE_200937 Chr6 4427105 4427104 - STOWAWAY51_OS 246 0.0793 (235/2965) 0 * * Os_TE_200921 Chr6 4424818 4424817 + ORSgTEMT00501504 140 0.0814 (232/2849) 0 * * Os_TE_200919 Chr6 4424764 4424765 + TWIFBIG 3567 0.2252 (662/2940) 0 * * Os_TE_200916 Chr6 4423971 4424624 + TWIFB1 3737 0.1162 (285/2453) 1 Intact * Os_TE_200915 Chr6 4422589 4422588 - ORSgTEMT01400022 212 0.0649 (181/2790) 0 * Os_TE_200914 Os_TE_200914 Chr6 4422584 4422585 - STOWAWAY9_OS 235 0.0751 (211/2809) 0 * Os_TE_200915 Os_TE_200902 Chr6 4420890 4420891 + ORSgTEMT00101532 332 0.0038 (8/2118) 0 * Os_TE_200901 Os_TE_200901 Chr6 4420888 4420887 + NDNA1TNA_OS 334 0.0024 (7/2922) 0 * Os_TE_200902 Os_TE_200900 Chr6 4420878 4420879 + MPING 430 0.2925 (854/2920) 0 * Os_TE_200899 Os_TE_200899 Chr6 4420876 4420875 - MPING 430 0.2902 (842/2901) 0 * Os_TE_200900 Os_TE_200898 Chr6 4420253 4420254 - RIREX_LTR 8828 0.0014 (4/2826) 0 * * Os_TE_200888 Chr6 4417825 4418141 - ORSgTEMT00100762 342 0.8521 (2023/2374) 0.67 Intact * Os_TE_200880 Chr6 4415547 4415548 + MERMITE18B 1306 0.0010 (3/2916) 0 * Os_TE_200879 Os_TE_200879 Chr6 4415541 4415540 + MERMITEB 1610 0.0014 (4/2914) 0 * Os_TE_200880 Os_TE_200870 Chr6 4414046 4414047 - COPI2_LTR 4733 0.0003 (1/2878) 0 * Os_TE_200869 Os_TE_200869 Chr6 4414042 4414041 + COPI2_LTR 4733 0.0003 (1/2881) 0 * Os_TE_200870 Os_TE_200868 Chr6 4413988 4413987 + ORSgTEMT01602181 239 0.0028 (8/2871) 0 * * Os_TE_200865 Chr6 4412128 4412127 - ORSgTEMT00501447 126 0.0013 (4/2992) 0 * * Os_TE_200864 Chr6 4409992 4409991 + DS-RICE3N 525 0.0029 (8/2803) 0 * * Os_TE_200861 Chr6 4407979 4407980 + OSTONOR1_LTR 6440 0.0027 (8/2988) 0 * * Os_TE_200847 Chr6 4404633 4404632 - RETRO1_LTR 8314 0.0003 (1/2984) 0 * * Os_TE_200845 Chr6 4404049 4404050 + ORSgTETNOOT00797 255 0.0050 (15/2977) 0 * Os_TE_200844 Os_TE_200844 Chr6 4404045 4404044 + ORSgTETNOOT01686 252 0.0047 (14/2980) 0 * Os_TE_200845 Os_TE_200842 Chr6 4401397 4401179 + ORSgTEMT01400032 215 0.1331 (398/2991) 1 Intact Os_TE_200838 Os_TE_200838 Chr6 4401145 4401343 - ORSgTEMT01400033 210 0.1438 (410/2851) 1 Intact Os_TE_200842 Os_TE_200835 Chr6 4399467 4399901 - ORSgTEMT01800105 452 0.1372 (410/2989) 1 Intact * Os_TE_200811 Chr6 4385525 4384128 + DASIA-2 1198 0.1338 (391/2923) 1 Intact * Os_TE_200808 Chr6 4383370 4383369 - ORSgTEMT02400179 221 0.0306 (90/2943) 0 * * Os_TE_200798 Chr6 4379215 4379216 - OSLINE1-4 4779 0.8709 (2570/2951) 0 * * Os_TE_200783 Chr6 4371044 4371045 + ORSiTERTOOT00296 5553 0.0027 (8/2993) 0 * Os_TE_200782 Os_TE_200782 Chr6 4371040 4371039 - SC-3_LTR 5748 0.0027 (8/2993) 0 * Os_TE_200783 Os_TE_200780 Chr6 4369309 4369310 - SC-3_LTR 5748 0.0047 (14/2993) 0 * * Os_TE_200774 Chr6 4362619 4362620 + MERMITEB 1610 0.0004 (1/2413) 0 * * Os_TE_200772 Chr6 4360700 4360699 + ORSgTEMT01701591 154 0.8658 (2503/2891) 0 * Os_TE_200766 Os_TE_200766 Chr6 4360629 4360630 - ORSgTEMT01702346 154 0.8806 (2604/2957) 0 * Os_TE_200772 Os_TE_200760 Chr6 4360060 4360345 + ORSgTEMT00101674 340 0.1367 (407/2978) 1 Intact * Os_TE_200746 Chr6 4356822 4356585 + ORSgTEMT01601122 212 0.1376 (378/2748) 1 Intact Os_TE_200745 Os_TE_200745 Chr6 4356585 4356794 + ORSgTEMT01601122 212 0.1324 (379/2863) 1 Intact Os_TE_200746 Os_TE_200736 Chr6 4354908 4353968 + OSMU5 4881 0.1515 (407/2686) 1 Intact * Os_TE_200713 Chr6 4345551 4345423 - UNIQUE 158 0.1496 (419/2800) 1 Intact Os_TE_200712 Os_TE_200712 Chr6 4345420 4345554 + ORSiTEMT03300001 145 0.2389 (418/1750) 1 Intact Os_TE_200713 Os_TE_200711 Chr6 4345259 4345258 + STOWAWAY51_OS 246 0.8560 (2401/2805) 0 * * Os_TE_200705 Chr6 4344039 4343698 + ORSgTEMT00101537 338 0.6797 (416/612) 1 Intact Os_TE_200700 Os_TE_200700 Chr6 4343697 4344039 - ORSgTEMT00101161 337 0.1434 (408/2845) 1 Intact Os_TE_200705 Os_TE_200699 Chr6 4343617 4343618 - COPI2_LTR 4733 0.0349 (103/2950) 0 * * Os_TE_200687 Chr6 4335491 4335492 + RIREX_LTR 8828 0.0003 (1/2971) 0 * Os_TE_200686 Os_TE_200686 Chr6 4335487 4335486 - RIREX_LTR 8828 0.0003 (1/2968) 0 * Os_TE_200687 Os_TE_200678 Chr6 4325949 4325950 - ORSiTERTOOT00274 4749 0.0004 (1/2843) 0 * * Os_TE_200661 Chr6 4312311 4312310 - DITAILA 257 0.7242 (1822/2516) 0 * * Os_TE_200659 Chr6 4311493 4311494 + COPI2_LTR 4733 0.0003 (1/2980) 0 * * Os_TE_200654 Chr6 4309192 4308939 + ORSgTETNOOT00792 273 0.3174 (762/2401) 1 Intact Os_TE_200652 Os_TE_200652 Chr6 4308933 4309188 + STOWAWAY17_OS 259 0.2664 (760/2853) 1 Intact Os_TE_200654 Os_TE_200650 Chr6 4308796 4308550 - ORSgTEMT00900846 250 0.2617 (758/2896) 1 Intact Os_TE_200646 Os_TE_200646 Chr6 4308550 4308796 + ORSgTEMT00900319 250 0.2739 (768/2804) 1 Intact Os_TE_200650 Os_TE_200645 Chr6 4308488 4308487 + STOWAWAY51_OS 246 0.0004 (1/2764) 0 * * Os_TE_200643 Chr6 4308394 4308395 + STOWAWAY51_OS 246 0.4679 (569/1216) 0 * * Os_TE_200642 Chr6 4308292 4308045 + ORSiTEMT01400003 220 0.3934 (747/1899) 1 Intact Os_TE_200640 Os_TE_200640 Chr6 4308043 4308250 - ORSgTEMT01400011 212 0.7383 (759/1028) 1 Intact Os_TE_200642 Os_TE_200633 Chr6 4305248 4305249 + ORSgTETNOOT00908 242 0.0003 (1/2953) 0 * Os_TE_200632 Os_TE_200632 Chr6 4305246 4305245 + ORSgTETNOOT01522 239 0.0003 (1/2962) 0 * Os_TE_200633 Os_TE_200627 Chr6 4300695 4300694 - ENSPM3_OS 10837 0.7568 (2268/2997) 0 * * Os_TE_200611 Chr6 4288119 4288118 + ORSgTEMT01602181 239 0.4581 (355/775) 0 * Os_TE_200610 Os_TE_200610 Chr6 4288116 4288117 - ORSgTEMT01600578 239 0.3126 (342/1094) 0 * Os_TE_200611 Os_TE_200606 Chr6 4285773 4285772 - RIRE2_LTR 11306 0.0488 (146/2990) 0 * * Os_TE_200605 Chr6 4285597 4285596 + ORSgTEMT00901844 250 0.0030 (9/2994) 0 * * Os_TE_200602 Chr6 4285384 4285246 - ORSgTEMT00501447 126 0.2524 (750/2971) 1 Intact * Os_TE_200577 Chr6 4281383 4281384 + OSTONOR1_LTR 6440 0.0003 (1/2948) 0 * Os_TE_200576 Os_TE_200576 Chr6 4281379 4281378 - ORSiTERT00100062 5674 0.0003 (1/2950) 0 * Os_TE_200577 Os_TE_200572 Chr6 4280406 4280405 + ORSgTEMT01400031 216 0.0021 (6/2917) 0 * * Os_TE_200570 Chr6 4280216 4279728 - OSTE20 496 0.0920 (230/2500) 1 Intact * Os_TE_200561 Chr6 4278829 4278830 + ORSgTEMT01601018 231 0.0079 (6/763) 0 * Os_TE_200560 Os_TE_200560 Chr6 4278825 4278824 - ORSgTEMT01602413 239 0.0079 (6/762) 0 * Os_TE_200561 Os_TE_200559 Chr6 4278822 4278823 + ORSgTEMT01601743 239 0.0078 (6/765) 0 * * Os_TE_200556 Chr6 4278075 4277910 - ORSgTEMT01700659 156 0.2572 (755/2936) 1 Intact * Os_TE_200549 Chr6 4275598 4275183 + ORSgTEMT00300122 416 0.2617 (757/2893) 1 Intact Os_TE_200547 Os_TE_200547 Chr6 4275172 4275586 + ORSiTEMT00300001 383 0.2517 (740/2940) 1 Intact Os_TE_200549 Os_TE_200539 Chr6 4272311 4272743 - ORSgTEMT03000025 382 0.2474 (718/2902) 1 Intact * Os_TE_200537 Chr6 4272077 4272076 - COPIA2-LTR_OS 6433 0.3504 (1046/2985) 0 * * Os_TE_200536 Chr6 4271835 4271836 + COPIA2-LTR_OS 6433 0.0275 (26/944) 0 * * Os_TE_200533 Chr6 4271177 4271437 - INDITTO 263 0.2577 (762/2957) 1 Intact * Os_TE_200531 Chr6 4271065 4270717 + SINE03_OS 360 0.2647 (757/2860) 1 Intact * Os_TE_200520 Chr6 4268196 4268197 - ORSgTEMT01700473 151 0.0050 (9/1789) 0 * * Os_TE_200515 Chr6 4264138 4264139 - SC-8_LTR 4951 0.0003 (1/2998) 0 * Os_TE_200514 Os_TE_200514 Chr6 4264134 4264133 + SC-8_LTR 4951 0.0003 (1/2996) 0 * Os_TE_200515 Os_TE_200513 Chr6 4263682 4263683 - ORSgTETNOOT00754 253 0.0037 (11/2990) 0 * Os_TE_200512 Os_TE_200512 Chr6 4263679 4263678 + ORSgTETNOOT01686 252 0.0041 (11/2683) 0 * Os_TE_200513 Os_TE_200510 Chr6 4260016 4260015 + STOWAWAY1_OS 149 0.7549 (2255/2987) 0 * * Os_TE_200502 Chr6 4253340 4253341 + ORSiTERTOOT00381 4988 0.0003 (1/2963) 0 * Os_TE_200501 Os_TE_200501 Chr6 4253336 4253335 - SC-8_LTR 4951 0.0003 (1/2989) 0 * Os_TE_200502 Os_TE_200497 Chr6 4251884 4252033 + ORSgTEMT01700715 134 0.2590 (762/2942) 1 Intact * Os_TE_200495 Chr6 4250445 4250446 - ORSiTETNOOT00134 607 0.0037 (11/2975) 0 * Os_TE_200494 Os_TE_200494 Chr6 4250438 4250437 + TWIF 586 0.0037 (11/2986) 0 * Os_TE_200495 Os_TE_200491 Chr6 4248334 4250128 - MERMITED 1572 0.2536 (755/2977) 1 Intact * Os_TE_200486 Chr6 4245965 4245966 - SC-8_LTR 4951 0.0003 (1/2989) 0 * Os_TE_200485 Os_TE_200485 Chr6 4245961 4245960 + SC-8_LTR 4951 0.0003 (1/2987) 0 * Os_TE_200486 Os_TE_200483 Chr6 4244364 4244365 - GAIJIN 147 0.0548 (162/2956) 0 * Os_TE_200482 Os_TE_200482 Chr6 4244363 4244362 + ORSgTEMT00500260 149 0.0556 (165/2967) 0 * Os_TE_200483 Os_TE_200459 Chr6 4240202 4240201 - ORSgTEMT01400014 209 0.8656 (2582/2983) 0 * Os_TE_200458 Os_TE_200458 Chr6 4240196 4240197 + ORSgTEMT01400032 215 0.8565 (2399/2801) 0 * Os_TE_200459 Os_TE_200456 Chr6 4239851 4240054 + ORSgTEMT01601122 212 0.1371 (398/2903) 1 Intact * Os_TE_200454 Chr6 4239553 4239554 + STOWAWAY51_OS 246 0.0572 (164/2866) 0 * * Os_TE_200453 Chr6 4239535 4239536 + RETRO2A_LTR 12895 0.0295 (85/2880) 0 * Os_TE_200452 Os_TE_200452 Chr6 4239531 4239530 - RETRO1_LTR 8314 0.0270 (72/2662) 0 * Os_TE_200453 Os_TE_200446 Chr6 4238230 4238231 + ORSgTEMT01601122 212 0.0028 (8/2843) 0 * * Os_TE_200436 Chr6 4237191 4237192 + ORSgTETNOOT00908 242 0.0381 (111/2913) 0 * * Os_TE_200432 Chr6 4236872 4236873 - MPING 430 0.0003 (1/2970) 0 * Os_TE_200431 Os_TE_200431 Chr6 4236870 4236869 + MPING 430 0.0003 (1/2973) 0 * Os_TE_200432 Os_TE_200430 Chr6 4236725 4236724 + STOWAWAY51_OS 246 0.0027 (8/2927) 0 * Os_TE_200429 Os_TE_200429 Chr6 4236719 4236720 - STOWAWAY51_OS 246 0.0031 (9/2944) 0 * Os_TE_200430 Os_TE_200423 Chr6 4234844 4234843 - ORSgTETNOOT00118 134 0.0030 (9/2986) 0 * Os_TE_200422 Os_TE_200422 Chr6 4234839 4234840 + ORSgTEMT00500201 140 0.0030 (9/2987) 0 * Os_TE_200423 Os_TE_200413 Chr6 4233992 4233993 + ORSiTEMT03300001 145 0.0027 (8/2978) 0 * * Os_TE_200411 Chr6 4233637 4233638 - ORSgTEMT00502257 142 0.0028 (8/2884) 0 * * Os_TE_200410 Chr6 4230819 4230820 + COPI2_LTR 4733 0.0003 (1/2999) 0 * Os_TE_200409 Os_TE_200409 Chr6 4230815 4230814 - COPI2_LTR 4733 0.0003 (1/2999) 0 * Os_TE_200410 Os_TE_200380 Chr6 4221455 4221456 - MDR2 6967 0.0202 (59/2925) 0 * Os_TE_200379 Os_TE_200379 Chr6 4221446 4221445 + MDR2 6967 0.0212 (62/2921) 0 * Os_TE_200380 Os_TE_200363 Chr6 4213510 4213511 - SC-3_LTR 5748 0.0003 (1/2995) 0 * Os_TE_200362 Os_TE_200362 Chr6 4213506 4213505 + ORSiTERTOOT00296 5553 0.0003 (1/2996) 0 * Os_TE_200363 Os_TE_200355 Chr6 4210631 4210632 - HARB-1_OS 5166 0.0007 (2/2962) 0 * * Os_TE_200354 Chr6 4210454 4210455 - COPIA2-LTR_OS 6433 0.0003 (1/2904) 0 * Os_TE_200353 Os_TE_200353 Chr6 4210450 4210449 + COPIA2-LTR_OS 6433 0.0003 (1/2881) 0 * Os_TE_200354 Os_TE_200314 Chr6 4198628 4198629 + ORSiTERTOOT00226 792 0.0003 (1/2980) 0 * * Os_TE_200301 Chr6 4196732 4196733 + COPI2_LTR 4733 0.0013 (4/2984) 0 * Os_TE_200300 Os_TE_200300 Chr6 4196728 4196727 - COPI2_LTR 4733 0.0013 (4/2985) 0 * Os_TE_200301 Os_TE_200290 Chr6 4195570 4195569 + TEOS1 476 0.0017 (5/2940) 0 * * Os_TE_200288 Chr6 4195396 4195397 - SZ-35LTR 3853 0.0007 (2/2800) 0 * Os_TE_200287 Os_TE_200287 Chr6 4195392 4195391 + RETROSAT4_LTR 13504 0.0007 (2/2745) 0 * Os_TE_200288 Os_TE_200281 Chr6 4192989 4192990 + SZ-55_LTR 10318 0.0003 (1/2987) 0 * Os_TE_200280 Os_TE_200280 Chr6 4192985 4192984 - SZ-55_LTR 10318 0.0003 (1/2987) 0 * Os_TE_200281 Os_TE_200254 Chr6 4175013 4175014 + SC-8_LTR 4951 0.0003 (1/2975) 0 * Os_TE_200253 Os_TE_200253 Chr6 4175009 4175008 - SC-8_LTR 4951 0.0003 (1/2964) 0 * Os_TE_200254 Os_TE_200230 Chr6 4166413 4166414 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_200229 Os_TE_200229 Chr6 4166409 4166408 - COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_200230 Os_TE_200214 Chr6 4164058 4164057 + SZ-43LTR 4039 0.0023 (7/2986) 0 * * Os_TE_200212 Chr6 4161076 4161075 - ORSgTEMT01601432 239 0.0003 (1/2969) 0 * * Os_TE_200203 Chr6 4156407 4159601 + RETROSAT2LTR 12796 0.1921 (286/1489) -1 Solo_LTR * Os_TE_200153 Chr6 4138855 4138856 + SC-8_LTR 4951 0.0007 (2/2996) 0 * * Os_TE_200148 Chr6 4136689 4136690 + COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_200147 Os_TE_200147 Chr6 4136685 4136684 - COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_200148 Os_TE_200117 Chr6 4127444 4127443 - ORSgTEMT04600010 284 0.0027 (8/2979) 0 * Os_TE_200116 Os_TE_200116 Chr6 4127434 4127435 + ORSgTEMT04600037 279 0.0027 (8/2970) 0 * Os_TE_200117 Os_TE_200078 Chr6 4120814 4120815 - CACTA-I 1124 0.0027 (8/2969) 0 * Os_TE_200077 Os_TE_200077 Chr6 4120812 4120811 + CACTA-I 1124 0.0027 (8/2966) 0 * Os_TE_200078 Os_TE_200047 Chr6 4118016 4118017 - NDNA1TNA_OS 334 0.0007 (2/2935) 0 * Os_TE_200046 Os_TE_200046 Chr6 4118014 4118013 + NDNA1TNA_OS 334 0.0007 (2/2931) 0 * Os_TE_200047 Os_TE_200044 Chr6 4117603 4106215 + SPMLIKE 10989 0.7190 (2116/2943) 1 Intact Os_TE_200038 Os_TE_200038 Chr6 4106215 4117604 - ORSgTETN00200001 10994 0.7066 (2013/2849) 1 Intact Os_TE_200044 Os_TE_200019 Chr6 4103231 4103232 + STOWAWAY30_OS 147 0.0003 (1/2973) 0 * * Os_TE_200015 Chr6 4102558 4102557 + STOWAWAY51_OS 246 0.0003 (1/2983) 0 * * Os_TE_200014 Chr6 4099751 4099752 + AMYLTP 383 0.4433 (1318/2973) 0 * Os_TE_200013 Os_TE_200013 Chr6 4099743 4099742 - AMYLTP 383 0.4449 (1319/2965) 0 * Os_TE_200014 Os_TE_200007 Chr6 4093158 4093159 + MPING 430 0.0071 (21/2941) 0 * Os_TE_200006 Os_TE_200006 Chr6 4093156 4093155 - MPING 430 0.0071 (21/2939) 0 * Os_TE_200007 Os_TE_200001 Chr6 4092820 4092821 + MPING 430 0.0003 (1/2978) 0 * Os_TE_200000 Os_TE_200000 Chr6 4092818 4092817 - MPING 430 0.0009 (1/1130) 0 * Os_TE_200001 Os_TE_199991 Chr6 4087963 4087964 + DS-RICE4N 715 0.0734 (195/2658) 0 * * Os_TE_199943 Chr6 4059457 4059458 + INDITTO 263 0.6434 (1909/2967) 0 * Os_TE_199942 Os_TE_199942 Chr6 4059455 4059454 - INDITTO 263 0.6347 (1856/2924) 0 * Os_TE_199943 Os_TE_199928 Chr6 4053797 4053796 + ORSgTEMT00101463 156 0.0003 (1/2942) 0 * * Os_TE_199910 Chr6 4047272 4047271 + COPIA2-LTR_OS 6433 0.0003 (1/2873) 0 * * Os_TE_199907 Chr6 4043764 4043765 - SZ-22_LTR 4403 0.0013 (4/2993) 0 * Os_TE_199906 Os_TE_199906 Chr6 4043760 4043759 + ORSiTERTOOT00034 791 0.0013 (4/2995) 0 * Os_TE_199907 Os_TE_199892 Chr6 4040162 4040161 + COPI2_LTR 4733 0.0007 (2/2973) 0 * * Os_TE_199829 Chr6 4023027 4023028 - SINE03_OS 360 0.0003 (1/2950) 0 * * Os_TE_199801 Chr6 4007727 4007728 + INDITTO 263 0.0049 (14/2840) 0 * Os_TE_199800 Os_TE_199800 Chr6 4007725 4007724 - INDITTO 263 0.0045 (13/2877) 0 * Os_TE_199801 Os_TE_199799 Chr6 4007279 4007280 + COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * Os_TE_199798 Os_TE_199798 Chr6 4007275 4007274 - COPIA2-LTR_OS 6433 0.0003 (1/2984) 0 * Os_TE_199799 Os_TE_199788 Chr6 4005010 4005011 - HARB-1_OS 5166 0.0003 (1/2942) 0 * Os_TE_199787 Os_TE_199787 Chr6 4005008 4005007 + HARB-1_OS 5166 0.0003 (1/2940) 0 * Os_TE_199788 Os_TE_199744 Chr6 3990113 3990114 - RETRO2_LTR 12874 0.0953 (278/2918) 0 * Os_TE_199743 Os_TE_199743 Chr6 3990109 3990108 + RETRO2_LTR 12874 0.0918 (268/2919) 0 * Os_TE_199744 Os_TE_199738 Chr6 3989809 3985876 - RETROSAT4_LTR 13504 0.8704 (2585/2970) 1 Solo_LTR Os_TE_199734 Os_TE_199734 Chr6 3985878 3989809 + RETROSAT4_LTR 13504 0.8548 (2326/2721) -1 Solo_LTR Os_TE_199738 Os_TE_199720 Chr6 3981089 3981090 + COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_199719 Os_TE_199719 Chr6 3981085 3981084 - COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_199720 Os_TE_199706 Chr6 3978306 3978305 + COPI2_LTR 4733 0.0003 (1/2989) 0 * * Os_TE_199682 Chr6 3973644 3973645 + ORSgTETNOOT00670 249 0.0017 (5/2969) 0 * * Os_TE_199646 Chr6 3959380 3959381 + ORSiTERTOOT00296 5553 0.0007 (2/2982) 0 * Os_TE_199645 Os_TE_199645 Chr6 3959376 3959375 - SC-3_LTR 5748 0.0007 (2/2983) 0 * Os_TE_199646 Os_TE_199644 Chr6 3958933 3958932 - STOWAWAY51_OS 246 0.0007 (2/2995) 0 * Os_TE_199643 Os_TE_199643 Chr6 3958930 3958931 - STOWAWAY51_OS 246 0.0007 (2/2992) 0 * Os_TE_199644 Os_TE_199641 Chr6 3958851 3958852 + MPING 430 0.0003 (1/2995) 0 * Os_TE_199640 Os_TE_199640 Chr6 3958849 3958848 - MPING 430 0.0003 (1/2988) 0 * Os_TE_199641 Os_TE_199618 Chr6 3952370 3952371 - ORSiTERTOOT00421 5200 0.0004 (1/2814) 0 * * Os_TE_199604 Chr6 3945430 3945429 - SZ-57_LTR 3700 0.0003 (1/2963) 0 * * Os_TE_199593 Chr6 3944129 3943777 - ORSgTEMT00600524 364 0.8574 (2555/2980) 1 Intact * Os_TE_199564 Chr6 3934344 3934345 + SC-8_LTR 4951 0.0010 (3/2992) 0 * Os_TE_199563 Os_TE_199563 Chr6 3934340 3934339 - SC-8_LTR 4951 0.0010 (3/2995) 0 * Os_TE_199564 Os_TE_199553 Chr6 3929512 3929513 + OSTONOR1_LTR 6440 0.0003 (1/2997) 0 * Os_TE_199552 Os_TE_199552 Chr6 3929508 3929507 - OSTONOR1_LTR 6440 0.0003 (1/2998) 0 * Os_TE_199553 Os_TE_199529 Chr6 3918233 3918234 - ORSgTEMT01601208 238 0.0013 (4/2963) 0 * * Os_TE_199528 Chr6 3918129 3918128 + WANDERER 232 0.0010 (3/2974) 0 * * Os_TE_199519 Chr6 3916789 3916790 - RIREX_LTR 8828 0.0003 (1/2976) 0 * * Os_TE_199516 Chr6 3915430 3915429 + ORSgTEMT00502094 140 0.0013 (4/2996) 0 * * Os_TE_199511 Chr6 3913194 3913195 - OSTE33 1012 0.0010 (3/2998) 0 * Os_TE_199510 Os_TE_199510 Chr6 3913186 3913185 - OSTE33 1012 0.0010 (3/2998) 0 * Os_TE_199511 Os_TE_199501 Chr6 3911683 3911682 + STOWAWAY44_OS 240 0.0007 (2/2697) 0 * * Os_TE_199485 Chr6 3903274 3903275 + F804 170 0.0010 (3/2942) 0 * * Os_TE_199446 Chr6 3810650 3810651 + RIREX_LTR 8828 0.0003 (1/2994) 0 * Os_TE_199445 Os_TE_199445 Chr6 3810646 3810645 - RIREX_LTR 8828 0.0003 (1/2993) 0 * Os_TE_199446 Os_TE_199443 Chr6 3810209 3810210 - RIRE7_LTR 7615 0.0003 (1/2993) 0 * Os_TE_199442 Os_TE_199442 Chr6 3810205 3810204 + RIRE7_LTR 7615 0.0003 (1/2993) 0 * Os_TE_199443 Os_TE_199441 Chr6 3810033 3810034 + TELIA 141 0.0214 (64/2987) 0 * Os_TE_199440 Os_TE_199440 Chr6 3810025 3810024 - TELIA 141 0.0218 (65/2981) 0 * Os_TE_199441 Os_TE_199439 Chr6 3809746 3809745 - ORSgTEMT01400014 209 0.0013 (4/2986) 0 * * Os_TE_199413 Chr6 3799014 3799015 + STOWAWAY21_OS 243 0.0007 (1/1519) 0 * * Os_TE_199411 Chr6 3798006 3798005 + ORSgTEMT01601591 242 0.0064 (19/2986) 0 * Os_TE_199410 Os_TE_199410 Chr6 3798000 3798001 + STOWAWAY51_OS 246 0.0064 (19/2989) 0 * Os_TE_199411 Os_TE_199358 Chr6 3776504 3776505 + COPI1_LTR 4721 0.0004 (1/2607) 0 * * Os_TE_199346 Chr6 3766849 3766850 + RIREX_LTR 8828 0.0003 (1/2971) 0 * Os_TE_199345 Os_TE_199345 Chr6 3766845 3766844 - RIREX_LTR 8828 0.0003 (1/2975) 0 * Os_TE_199346 Os_TE_199344 Chr6 3766723 3766724 + GYPSY-B_LTR 7068 0.0704 (210/2984) 0 * Os_TE_199343 Os_TE_199343 Chr6 3766719 3766718 - GYPSY-B_LTR 7068 0.0696 (207/2975) 0 * Os_TE_199344 Os_TE_199313 Chr6 3748159 3748158 - ORSgTEMT01601208 238 0.0017 (5/2897) 0 * * Os_TE_199275 Chr6 3728018 3728017 - RIRE2_LTR 11306 0.0003 (1/2898) 0 * * Os_TE_199269 Chr6 3723234 3723235 - COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * * Os_TE_199267 Chr6 3723023 3723024 - RIREX_LTR 8828 0.1033 (308/2983) 0 * Os_TE_199266 Os_TE_199266 Chr6 3723019 3723018 + RIREX_LTR 8828 0.1025 (306/2986) 0 * Os_TE_199267 Os_TE_199265 Chr6 3722623 3722624 + SPMLIKE 10989 0.0994 (296/2978) 0 * Os_TE_199264 Os_TE_199264 Chr6 3722621 3722620 - ORSgTETN00200001 10994 0.0992 (296/2983) 0 * Os_TE_199265 Os_TE_199224 Chr6 3698396 3698395 + COPIO_LTR 11693 0.0013 (4/2986) 0 * * Os_TE_199194 Chr6 3679241 3679242 - RETRO1_LTR 8314 0.0007 (2/2985) 0 * Os_TE_199193 Os_TE_199193 Chr6 3679237 3679236 + RETRO2_LTR 12874 0.0007 (2/2982) 0 * Os_TE_199194 Os_TE_199180 Chr6 3667181 3667180 + STOWAWAY51_OS 246 0.0007 (2/2992) 0 * Os_TE_199179 Os_TE_199179 Chr6 3667175 3667176 - STOWAWAY51_OS 246 0.0007 (2/2992) 0 * Os_TE_199180 Os_TE_199178 Chr6 3666538 3666537 + NDNA2TNA_OS 346 0.0003 (1/2988) 0 * * Os_TE_199163 Chr6 3660291 3660292 - SZ-59_LTR 5600 0.0007 (2/2988) 0 * * Os_TE_199159 Chr6 3660019 3660020 + OLO24 345 0.0003 (1/2994) 0 * Os_TE_199158 Os_TE_199158 Chr6 3660017 3660016 - OLO24 345 0.0003 (1/2993) 0 * Os_TE_199159 Os_TE_199153 Chr6 3658778 3658779 + ORSgTEMT02400110 218 0.0007 (2/2984) 0 * Os_TE_199152 Os_TE_199152 Chr6 3658775 3658774 - TYPEM 227 0.0007 (2/2977) 0 * Os_TE_199153 Os_TE_199137 Chr6 3652068 3652069 + CASTAWAY 364 0.0003 (1/2994) 0 * Os_TE_199136 Os_TE_199136 Chr6 3652063 3652062 - ORSgTEMT00600471 347 0.0003 (1/2992) 0 * Os_TE_199137 Os_TE_199132 Chr6 3651189 3651188 - COPI2_LTR 4733 0.0003 (1/2982) 0 * * Os_TE_199093 Chr6 3637787 3637786 - ORSgTEMT01600790 236 0.0017 (5/2934) 0 * * Os_TE_199078 Chr6 3631396 3631395 - RIREX_LTR 8828 0.0004 (1/2706) 0 * * Os_TE_199077 Chr6 3631373 3606781 + RETRO2_LTR 12874 0.0485 (133/2743) 1 Intact Os_TE_199062 Os_TE_199062 Chr6 3606781 3631373 - RETRO1_LTR 8314 0.0504 (133/2640) 1 Intact Os_TE_199077 Os_TE_199055 Chr6 3603202 3603203 + AMYLTP 383 0.0023 (7/2990) 0 * Os_TE_199054 Os_TE_199054 Chr6 3603194 3603193 - AMYLTP 383 0.0023 (7/2991) 0 * Os_TE_199055 Os_TE_199053 Chr6 3601533 3601534 - RETRO1_LTR 8314 0.1608 (481/2991) 0 * Os_TE_199052 Os_TE_199052 Chr6 3601529 3601528 + RETRO2A_LTR 12895 0.1576 (471/2988) 0 * Os_TE_199053 Os_TE_199050 Chr6 3598393 3598394 + ORSiTERTOOT00028 8600 0.1033 (308/2982) 0 * Os_TE_199049 Os_TE_199049 Chr6 3598391 3598390 - RETROSAT2LTR 12796 0.1037 (310/2990) 0 * Os_TE_199050 Os_TE_199047 Chr6 3595898 3595899 - ORSiTETNOOT00134 607 0.0003 (1/2907) 0 * Os_TE_199046 Os_TE_199046 Chr6 3595891 3595890 + TWIF 586 0.0003 (1/2899) 0 * Os_TE_199047 Os_TE_199026 Chr6 3583366 3583365 + ORSiTERTOOT00441 4741 0.0003 (1/2972) 0 * * Os_TE_198979 Chr6 3551563 3551564 - OSTONOR1_LTR 6440 0.0004 (1/2372) 0 * * Os_TE_198956 Chr6 3540233 3540234 - MuDR2_OS 6770 0.0017 (5/2996) 0 * Os_TE_198955 Os_TE_198955 Chr6 3540224 3540223 + MuDR2_OS 6770 0.0013 (4/2996) 0 * Os_TE_198956 Os_TE_198949 Chr6 3536616 3536617 + MERMITEB 1610 0.0625 (10/160) 0 * * Os_TE_198928 Chr6 3524684 3524685 + ORSgTEMT04800085 366 0.0145 (4/275) 0 * * Os_TE_198915 Chr6 3516607 3516608 - COPIA2-LTR_OS 6433 0.0063 (1/160) 0 * * Os_TE_198913 Chr6 3516349 3516350 + ORSgTEMT01701755 160 0.0057 (1/176) 0 * * Os_TE_198902 Chr6 3511669 3511670 + RIRE2_LTR 11306 0.0017 (5/2944) 0 * Os_TE_198901 Os_TE_198901 Chr6 3511665 3511664 - RIRE2_LTR 11306 0.0017 (5/2939) 0 * Os_TE_198902 Os_TE_198854 Chr6 3477830 3483193 - SZ-62LTR 3649 0.0497 (142/2859) 1 Intact * Os_TE_198831 Chr6 3470662 3470661 + COPIA2-LTR_OS 6433 0.0009 (2/2170) 0 * * Os_TE_198791 Chr6 3455593 3455252 - NDNA1TNA_OS 334 0.2133 (637/2986) 1 Intact Os_TE_198787 Os_TE_198787 Chr6 3455252 3455591 + NDNA1TNA_OS 334 0.2135 (637/2983) 1 Intact Os_TE_198791 Os_TE_198772 Chr6 3439173 3439172 - OSTE24 683 0.0010 (3/2952) 0 * * Os_TE_198690 Chr6 3408668 3408667 - ORSiTERTOOT00183 3603 0.7581 (2071/2732) 0 * * Os_TE_198655 Chr6 3401908 3393264 + RIREX_LTR 8828 0.1365 (408/2990) 1 Intact Os_TE_198651 Os_TE_198651 Chr6 3393264 3401908 - RIREX_LTR 8828 0.1401 (419/2991) 1 Intact Os_TE_198655 Os_TE_198649 Chr6 3393165 3393164 - RIREX_LTR 8828 0.0003 (1/2990) 0 * * Os_TE_198639 Chr6 3391436 3391437 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_198638 Os_TE_198638 Chr6 3391432 3391431 + COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_198639 Os_TE_198634 Chr6 3388973 3388972 - STOWAWAY51_OS 246 0.0013 (4/2988) 0 * Os_TE_198633 Os_TE_198633 Chr6 3388970 3388971 - STOWAWAY51_OS 246 0.0010 (3/2987) 0 * Os_TE_198634 Os_TE_198632 Chr6 3388802 3388801 - STOWAWAY51_OS 246 0.0010 (3/2981) 0 * Os_TE_198631 Os_TE_198631 Chr6 3388799 3388800 - STOWAWAY51_OS 246 0.0010 (3/2974) 0 * Os_TE_198632 Os_TE_198626 Chr6 3387855 3387856 - INDITTO 263 0.0007 (2/2988) 0 * Os_TE_198625 Os_TE_198625 Chr6 3387853 3387852 + INDITTO 263 0.0007 (2/2984) 0 * Os_TE_198626 Os_TE_198624 Chr6 3387521 3387522 + NDNA2TNA_OS 346 0.6490 (1927/2969) 0 * Os_TE_198623 Os_TE_198623 Chr6 3387519 3387518 - NDNA2TNA_OS 346 0.6532 (1949/2984) 0 * Os_TE_198624 Os_TE_198619 Chr6 3384212 3384211 + ORSiTERTOOT00381 4988 0.0003 (1/2990) 0 * * Os_TE_198613 Chr6 3381208 3381209 - SC-8_LTR 4951 0.0003 (1/2981) 0 * Os_TE_198612 Os_TE_198612 Chr6 3381204 3381203 + SC-8_LTR 4951 0.0003 (1/2979) 0 * Os_TE_198613 Os_TE_198596 Chr6 3363654 3363655 - MUDRN1_OS 764 0.0017 (5/2989) 0 * Os_TE_198595 Os_TE_198595 Chr6 3363646 3363645 + MUDRN1_OS 764 0.0017 (5/2989) 0 * Os_TE_198596 Os_TE_198576 Chr6 3355803 3355804 + ORSiTERTOOT00226 792 0.0017 (5/2997) 0 * * Os_TE_198546 Chr6 3347742 3347741 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * * Os_TE_198545 Chr6 3347219 3347220 + COPIA2-LTR_OS 6433 0.0004 (1/2849) 0 * Os_TE_198544 Os_TE_198544 Chr6 3347215 3347214 - COPIA2-LTR_OS 6433 0.0003 (1/2858) 0 * Os_TE_198545 Os_TE_198543 Chr6 3347109 3346765 - OLO24 345 0.1270 (360/2835) 1 Intact Os_TE_198542 Os_TE_198542 Chr6 3346765 3347109 + OLO24 345 0.1395 (401/2874) 1 Intact Os_TE_198543 Os_TE_198533 Chr6 3343526 3345709 - RPO_OS 1983 0.1356 (405/2987) 1 Intact * Os_TE_198531 Chr6 3342490 3342491 - ORSgTEMT00502154 143 0.8575 (2515/2933) 0 * * Os_TE_198529 Chr6 3341709 3341708 - ORSgTEMT00900760 239 0.8655 (2562/2960) 0 * * Os_TE_198528 Chr6 3341548 3341308 + ORSgTEMT01400031 216 0.1454 (429/2950) 1 Intact Os_TE_198526 Os_TE_198526 Chr6 3341310 3341546 + STOWAWAY9_OS 235 0.1419 (421/2966) 1 Intact Os_TE_198528 Os_TE_198525 Chr6 3340542 3340198 + OLO24 345 0.1415 (421/2975) 1 Intact Os_TE_198524 Os_TE_198524 Chr6 3340198 3340542 - OLO24 345 0.1533 (437/2851) 1 Intact Os_TE_198525 Os_TE_198523 Chr6 3339844 3340085 + ORSgTETNOOT00908 242 0.1448 (431/2977) 1 Intact * Os_TE_198521 Chr6 3339722 3339600 - ORSgTEMT00501356 145 0.1462 (435/2975) 1 Intact Os_TE_198519 Os_TE_198519 Chr6 3339592 3339717 - ORSgTEMT00500471 125 0.1432 (425/2968) 1 Intact Os_TE_198521 Os_TE_198517 Chr6 3337006 3336512 - ORSgTEMT00900321 265 0.2861 (475/1660) 1 Intact * Os_TE_198511 Chr6 3336321 3336322 + OLO24 345 0.0242 (66/2725) 0 * * Os_TE_198509 Chr6 3335888 3335889 - RETRO2_LTR 12874 0.0050 (14/2820) 0 * Os_TE_198508 Os_TE_198508 Chr6 3335884 3335883 + RETRO2_LTR 12874 0.0038 (11/2888) 0 * Os_TE_198509 Os_TE_198506 Chr6 3335357 3335358 + CLOUD-7 495 0.8242 (2133/2588) 0 * Os_TE_198505 Os_TE_198505 Chr6 3335352 3335351 + CLOUD-7 495 0.8132 (2011/2473) 0 * Os_TE_198506 Os_TE_198504 Chr6 3334903 3334904 + DASIA-2 1198 0.0213 (63/2964) 0 * Os_TE_198503 Os_TE_198503 Chr6 3334895 3334894 + DASIA-2 1198 0.0232 (69/2977) 0 * Os_TE_198504 Os_TE_198497 Chr6 3333991 3333992 + COPIA2-LTR_OS 6433 0.0007 (2/2699) 0 * Os_TE_198496 Os_TE_198496 Chr6 3333987 3333986 - COPIA2-LTR_OS 6433 0.0011 (3/2681) 0 * Os_TE_198497 Os_TE_198495 Chr6 3333482 3333137 - OLO24 345 0.1382 (406/2937) 1 Intact * Os_TE_198493 Chr6 3332782 3332781 - STOWAWAY50_OS 174 0.8463 (2473/2922) 0 * * Os_TE_198482 Chr6 3331380 3331379 - RETROSAT2LTRA 3112 0.0043 (13/2998) 0 * * Os_TE_198467 Chr6 3322768 3322769 - SC-8_LTR 4951 0.0004 (1/2842) 0 * * Os_TE_198466 Chr6 3322764 3322763 - ORSgTETNOOT00694 253 0.0160 (46/2882) 0 * * Os_TE_198464 Chr6 3321973 3321974 - COPI2_LTR 4733 0.0003 (1/2987) 0 * Os_TE_198463 Os_TE_198463 Chr6 3321969 3321968 + COPI2_LTR 4733 0.0003 (1/2987) 0 * Os_TE_198464 Os_TE_198459 Chr6 3318942 3318941 - ORSgTEMT00901138 254 0.5594 (1671/2987) 0 * Os_TE_198458 Os_TE_198458 Chr6 3318938 3318939 + ORSgTEMT00900230 250 0.5603 (1672/2984) 0 * Os_TE_198459 Os_TE_198455 Chr6 3317244 3317245 + COPIA2-LTR_OS 6433 0.0395 (53/1342) 0 * Os_TE_198454 Os_TE_198454 Chr6 3317240 3317239 - COPIA2-LTR_OS 6433 0.0373 (50/1341) 0 * Os_TE_198455 Os_TE_198445 Chr6 3310478 3310479 + DITTO3 260 0.0968 (284/2935) 0 * * Os_TE_198423 Chr6 3304473 3304474 - MERMITE-18 1263 0.0901 (268/2975) 0 * * Os_TE_198417 Chr6 3302196 3302197 - RETROSAT2LTR 12796 0.0026 (7/2741) 0 * Os_TE_198416 Os_TE_198416 Chr6 3302194 3302193 + RETROSAT2LTR 12796 0.0020 (6/2991) 0 * Os_TE_198417 Os_TE_198410 Chr6 3300433 3300434 + ORSgTERT00200961 124 0.0063 (1/158) -1 * * Os_TE_198400 Chr6 3298260 3298261 + OSTE18 129 0.0959 (286/2982) 0 * * Os_TE_198397 Chr6 3297380 3297381 - ORSiTERT00100062 5674 0.0157 (47/2988) 0 * Os_TE_198396 Os_TE_198396 Chr6 3297376 3297375 + OSTONOR1_LTR 6440 0.0150 (45/2995) 0 * Os_TE_198397 Os_TE_198395 Chr6 3297341 3297342 + ORSgTEMT00500476 150 0.0030 (9/2992) 0 * * Os_TE_198393 Chr6 3296656 3296655 - DS-RICE2N 613 0.4497 (1329/2955) 0 * * Os_TE_198386 Chr6 3294008 3293855 + ORSgTEMT01702111 154 0.8921 (1579/1770) 1 Intact * Os_TE_198383 Chr6 3293731 3293730 - DITAILA 257 0.1158 (205/1770) 0 * * Os_TE_198381 Chr6 3292249 3292248 + COPIA2-LTR_OS 6433 0.0007 (2/2983) 0 * * Os_TE_198374 Chr6 3290868 3290869 - ORSgTEMT00600304 361 0.0031 (9/2877) 0 * Os_TE_198373 Os_TE_198373 Chr6 3290866 3290865 - CASTAWAY 364 0.0048 (13/2710) 0 * Os_TE_198374 Os_TE_198350 Chr6 3281307 3281306 + NDNA1TNA_OS 334 0.1073 (321/2991) 0 * * Os_TE_198348 Chr6 3281182 3281183 - SC-3_LTR 5748 0.0013 (4/2993) 0 * Os_TE_198347 Os_TE_198347 Chr6 3281178 3281177 + ORSiTERTOOT00296 5553 0.0013 (4/2994) 0 * Os_TE_198348 Os_TE_198338 Chr6 3275001 3275000 + CASGRANDA 465 0.0167 (50/2989) 0 * * Os_TE_198335 Chr6 3272976 3272977 + MPING 430 0.0003 (1/2984) 0 * Os_TE_198334 Os_TE_198334 Chr6 3272974 3272973 - MPING 430 0.0003 (1/2980) 0 * Os_TE_198335 Os_TE_198326 Chr6 3272043 3272044 + OSMU5 4881 0.0013 (4/2978) 0 * Os_TE_198325 Os_TE_198325 Chr6 3272034 3272033 - OSMU5 4881 0.0013 (4/2971) 0 * Os_TE_198326 Os_TE_198313 Chr6 3269967 3269966 - RIRE3_LTR 12054 0.0017 (5/2997) 0 * * Os_TE_198286 Chr6 3263256 3263257 - TYPEM 227 0.0755 (192/2544) 0 * Os_TE_198285 Os_TE_198285 Chr6 3263255 3263254 - ORSgTEMT02400179 221 0.1017 (282/2773) 0 * Os_TE_198286 Os_TE_198280 Chr6 3259426 3259427 + SC-8_LTR 4951 0.0003 (1/2984) 0 * Os_TE_198279 Os_TE_198279 Chr6 3259422 3259421 - SC-8_LTR 4951 0.0003 (1/2988) 0 * Os_TE_198280 Os_TE_198269 Chr6 3250236 3250237 + ORSgTETNOOT01668 244 0.0209 (51/2435) 0 * * Os_TE_198242 Chr6 3240784 3240783 + NDNA1TNA_OS 334 0.0044 (13/2970) 0 * * Os_TE_198230 Chr6 3236037 3236038 + COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * * Os_TE_198224 Chr6 3234394 3234395 - SZ-22_LTR 4403 0.0009 (1/1072) 0 * Os_TE_198223 Os_TE_198223 Chr6 3234390 3234389 + ORSiTERTOOT00226 792 0.0003 (1/2989) 0 * Os_TE_198224 Os_TE_198222 Chr6 3234375 3222934 - RETRO2_LTR 12874 0.3457 (1032/2985) 1 Intact * Os_TE_198209 Chr6 3217396 3217395 - ORSgTEMT01701104 154 0.0033 (10/2986) 0 * Os_TE_198208 Os_TE_198208 Chr6 3217393 3217394 + ORSgTEMT01701115 144 0.0033 (10/2990) 0 * Os_TE_198209 Os_TE_198204 Chr6 3212695 3207250 - SC-3_LTR 5748 0.3455 (1033/2990) 1 Intact Os_TE_198203 Os_TE_198203 Chr6 3207031 3212695 + ORSiTERTOOT00296 5553 0.3467 (1036/2988) 1 Intact Os_TE_198204 Os_TE_198191 Chr6 3195140 3195139 + RPO_OS 1983 0.0177 (53/2987) 0 * * Os_TE_198187 Chr6 3190460 3190459 + TYPEU4 402 0.0017 (5/2926) 0 * * Os_TE_198186 Chr6 3190203 3190204 + SC-8_LTR 4951 0.0007 (2/2979) 0 * Os_TE_198185 Os_TE_198185 Chr6 3190199 3190198 - SC-8_LTR 4951 0.0007 (2/2976) 0 * Os_TE_198186 Os_TE_198181 Chr6 3185710 3185503 - STOWAWAY50_OS 174 0.7184 (1901/2646) 1 Intact Os_TE_198180 Os_TE_198180 Chr6 3185501 3185710 + STOWAWAY50_OS 174 0.7104 (1916/2697) 1 Intact Os_TE_198181 Os_TE_198178 Chr6 3185248 3185249 - ORSgTEMT01800105 452 0.3198 (829/2592) 0 * Os_TE_198177 Os_TE_198177 Chr6 3185245 3185244 + TNR12 528 0.3267 (842/2577) 0 * Os_TE_198178 Os_TE_198176 Chr6 3184892 3184656 - ORSgTEMT01601208 238 0.6995 (1890/2702) 1 Intact Os_TE_198174 Os_TE_198174 Chr6 3184656 3184891 - ORSgTEMT01600639 228 0.7295 (1923/2636) 1 Intact Os_TE_198176 Os_TE_198169 Chr6 3183844 3184078 - ORSgTEMT00901654 233 0.7379 (2187/2964) 1 Intact * Os_TE_198167 Chr6 3183704 3182432 + SETARIA2 1142 0.7424 (2182/2939) 1 Intact * Os_TE_198161 Chr6 3180508 3180509 + ORSiTERTOOT00296 5553 0.0003 (1/2994) 0 * * Os_TE_198158 Chr6 3176882 3176883 + SC-8_LTR 4951 0.0010 (3/2986) 0 * Os_TE_198157 Os_TE_198157 Chr6 3176878 3176877 - SC-8_LTR 4951 0.0010 (3/2989) 0 * Os_TE_198158 Os_TE_198156 Chr6 3176762 3176761 - SC-3_LTR 5748 0.0030 (9/2992) 0 * * Os_TE_198147 Chr6 3174883 3174884 - ORSgTETN00200001 10994 0.0003 (1/2875) 0 * Os_TE_198146 Os_TE_198146 Chr6 3174881 3174880 + SPMLIKE 10989 0.0003 (1/2895) 0 * Os_TE_198147 Os_TE_198145 Chr6 3174837 3174838 - HARB-1_OS 5166 0.0783 (224/2861) 0 * Os_TE_198144 Os_TE_198144 Chr6 3174835 3174834 + HARB-1_OS 5166 0.0765 (220/2877) 0 * Os_TE_198145 Os_TE_198142 Chr6 3173671 3173672 - ORSgTETNOOT01760 137 0.0030 (9/2996) 0 * * Os_TE_198120 Chr6 3168569 3168570 + COPIA2-LTR_OS 6433 0.0010 (3/2986) 0 * Os_TE_198119 Os_TE_198119 Chr6 3168565 3168564 - COPIA2-LTR_OS 6433 0.0013 (4/2986) 0 * Os_TE_198120 Os_TE_198118 Chr6 3168224 3168223 - ORSgTEMT01400022 212 0.0033 (10/2988) 0 * * Os_TE_198108 Chr6 3167003 3167004 + ORSgTEMT00502171 134 0.0037 (11/2968) 0 * Os_TE_198107 Os_TE_198107 Chr6 3167000 3166999 + ORSgTETNOOT00186 139 0.0034 (10/2972) 0 * Os_TE_198108 Os_TE_198087 Chr6 3159084 3159487 - SC-1_LTR 6888 0.4439 (1322/2978) 1 Solo_LTR * Os_TE_198081 Chr6 3154272 3154273 + MuDR2_OS 6770 0.0013 (4/2998) 0 * Os_TE_198080 Os_TE_198080 Chr6 3154264 3154263 - MuDR2_OS 6770 0.0013 (4/2998) 0 * Os_TE_198081 Os_TE_198073 Chr6 3150932 3150933 - SC-8_LTR 4951 0.3047 (898/2947) 0 * Os_TE_198072 Os_TE_198072 Chr6 3150928 3150927 + ORSiTERTOOT00381 4988 0.3063 (905/2955) 0 * Os_TE_198073 Os_TE_198055 Chr6 3134684 3134683 + ORSgTEMT01600102 237 0.0023 (7/2999) 0 * * Os_TE_198038 Chr6 3126935 3126934 - CLOUD 734 0.0027 (8/2993) 0 * * Os_TE_198008 Chr6 3117933 3117932 + COPI2_LTR 4733 0.0004 (1/2775) 0 * * Os_TE_198004 Chr6 3117036 3117035 - ORSgTEMT01700983 152 0.0030 (9/2976) 0 * * Os_TE_197996 Chr6 3114526 3114525 + ORSgTEMT00502437 145 0.0003 (1/2957) 0 * * Os_TE_197995 Chr6 3112670 3112671 - NDNA1TNA_OS 334 0.0027 (8/2966) 0 * Os_TE_197994 Os_TE_197994 Chr6 3112668 3112667 + NDNA1TNA_OS 334 0.0027 (8/2967) 0 * Os_TE_197995 Os_TE_197969 Chr6 3107828 3107829 + SINE03_OS 360 0.0003 (1/2888) 0 * * Os_TE_197921 Chr6 3099408 3099409 + RIREX_LTR 8828 0.0003 (1/2993) 0 * * Os_TE_197861 Chr6 3078080 3078081 - RIREX_LTR 8828 0.0003 (1/2968) 0 * * Os_TE_197838 Chr6 3067143 3067142 + COPI2_LTR 4733 0.0010 (3/2968) 0 * * Os_TE_197835 Chr6 3066907 3066908 - ORSgTEMT01602413 239 0.0464 (136/2931) 0 * * Os_TE_197830 Chr6 3059750 3059513 - STOWAWAY51_OS 246 0.3911 (1172/2997) 1 Intact * Os_TE_197828 Chr6 3059397 3059396 + NDNA1TNA_OS 334 0.0138 (41/2961) 0 * Os_TE_197827 Os_TE_197827 Chr6 3059387 3059388 - NDNA1TNA_OS 334 0.0143 (41/2862) 0 * Os_TE_197828 Os_TE_197824 Chr6 3057296 3057295 - STOWAWAY51_OS 246 0.0043 (12/2765) 0 * * Os_TE_197822 Chr6 3057203 3057204 + STOWAWAY49_OS 241 0.0804 (239/2974) 0 * * Os_TE_197820 Chr6 3057165 3057166 - NDNA1TNA_OS 334 0.0826 (246/2979) 0 * Os_TE_197819 Os_TE_197819 Chr6 3057163 3057162 + NDNA1TNA_OS 334 0.0852 (253/2971) 0 * Os_TE_197820 Os_TE_197818 Chr6 3057078 3057077 + AMYLTP 383 0.0027 (8/2979) 0 * * Os_TE_197816 Chr6 3054505 3054504 - AMYLTP 383 0.1245 (149/1197) 0 * * Os_TE_197815 Chr6 3054503 3054504 + F770 284 0.0369 (44/1192) 0 * * Os_TE_197794 Chr6 3046413 3046414 - SZ-52_LTR 13107 0.0027 (8/2968) 0 * * Os_TE_197792 Chr6 3046036 3046037 - SZ-40LTR 2465 0.0008 (1/1193) 0 * Os_TE_197791 Os_TE_197791 Chr6 3046032 3046031 + SZ-40LTR 2465 0.0008 (1/1197) 0 * Os_TE_197792 Os_TE_197786 Chr6 3041695 3041696 - MuDR3_OS 8604 0.0766 (226/2950) 0 * Os_TE_197785 Os_TE_197785 Chr6 3041688 3041687 + MuDR3_OS 8604 0.0709 (208/2934) 0 * Os_TE_197786 Os_TE_197784 Chr6 3039927 3039590 - ORSgTEMT00100799 337 0.4423 (1319/2982) 1 Intact Os_TE_197783 Os_TE_197783 Chr6 3039591 3039924 + NDNA1TNA_OS 334 0.4431 (1316/2970) 1 Intact Os_TE_197784 Os_TE_197777 Chr6 3036376 3036377 - ORMOSIA 482 0.5559 (1632/2936) 0 * * Os_TE_197774 Chr6 3034214 3033820 + ORSgTEMT00300064 397 0.4516 (1319/2921) 1 Intact Os_TE_197773 Os_TE_197773 Chr6 3033814 3034207 + ORSgTEMT00300069 394 0.4384 (1298/2961) 1 Intact Os_TE_197774 Os_TE_197766 Chr6 3033315 3033316 + COPIA2-LTR_OS 6433 0.4886 (1454/2976) 0 * Os_TE_197765 Os_TE_197765 Chr6 3033311 3033310 - COPIA2-LTR_OS 6433 0.4884 (1452/2973) 0 * Os_TE_197766 Os_TE_197757 Chr6 3032060 3032059 + ORSgTEMT00500020 148 0.5605 (1649/2942) 0 * * Os_TE_197754 Chr6 3031824 3031823 - ORSgTETNOOT02392 181 0.0022 (3/1349) 0 * * Os_TE_197748 Chr6 3030496 3030495 + ORSgTEMT00901138 254 0.5686 (1699/2988) 0 * * Os_TE_197745 Chr6 3030206 3022185 - SZ-48LTR 3632 0.5110 (1342/2626) 1 Intact * Os_TE_197739 Chr6 3021933 3022184 - ORSgTETNOOT00762 266 0.4442 (1317/2965) 1 Intact * Os_TE_197733 Chr6 3020847 3020848 - NDNA2TNA_OS 346 0.0008 (1/1289) 0 * * Os_TE_197731 Chr6 3020771 3020367 - ORSgTEMT01800105 452 0.4457 (1290/2894) 1 Intact Os_TE_197729 Os_TE_197729 Chr6 3020367 3020767 - ORSgTEMT01800105 452 0.4500 (1286/2858) 1 Intact Os_TE_197731 Os_TE_197705 Chr6 3015148 3012887 + MERMITE18C 1473 0.7967 (1360/1707) 1 Intact * Os_TE_197702 Chr6 3014279 3014280 - RETROSAT2LTR 12796 0.0008 (1/1311) 0 * * Os_TE_197688 Chr6 3011334 3011333 + ORSgTEMT04600032 273 0.0028 (8/2880) 0 * * Os_TE_197686 Chr6 3011153 3011154 - MPING 430 0.0004 (1/2857) 0 * Os_TE_197685 Os_TE_197685 Chr6 3011151 3011150 + MPING 430 0.0004 (1/2856) 0 * Os_TE_197686 Os_TE_197681 Chr6 3010018 3010019 + ORSgTETNOOT00221 261 0.0003 (1/2986) 0 * Os_TE_197680 Os_TE_197680 Chr6 3010016 3010015 + INDITTO 263 0.0003 (1/2978) 0 * Os_TE_197681 Os_TE_197670 Chr6 3006373 3006374 - SC-7_LTR 4431 0.0003 (1/2985) 0 * Os_TE_197669 Os_TE_197669 Chr6 3006369 3006368 + SC-7_LTR 4431 0.0003 (1/2983) 0 * Os_TE_197670 Os_TE_197630 Chr6 2990181 2990182 - SC-8_LTR 4951 0.0003 (1/2993) 0 * Os_TE_197629 Os_TE_197629 Chr6 2990177 2990176 + SC-8_LTR 4951 0.0003 (1/2991) 0 * Os_TE_197630 Os_TE_197627 Chr6 2989242 2989243 - SC-3_LTR 5748 0.0007 (2/2993) 0 * Os_TE_197626 Os_TE_197626 Chr6 2989238 2989237 + ORSiTERTOOT00296 5553 0.0007 (2/2997) 0 * Os_TE_197627 Os_TE_197625 Chr6 2989210 2989209 + OSR3_LTR 5201 0.0130 (39/2997) 0 * * Os_TE_197606 Chr6 2982325 2982326 + COPIA2-LTR_OS 6433 0.1268 (379/2988) 0 * * Os_TE_197600 Chr6 2977530 2977529 - SC-8_LTR 4951 0.0003 (1/2993) 0 * * Os_TE_197582 Chr6 2963480 2963479 + STOWAWAY51_OS 246 0.0003 (1/2991) 0 * * Os_TE_197576 Chr6 2959216 2959217 - ORSiTERTOOT00402 2660 0.0013 (4/2995) 0 * Os_TE_197575 Os_TE_197575 Chr6 2959212 2959211 + ORSiTERTOOT00402 2660 0.0013 (4/2996) 0 * Os_TE_197576 Os_TE_197568 Chr6 2954124 2954125 + COWARD-3 221 0.0050 (15/2982) 0 * * Os_TE_197550 Chr6 2947447 2947448 - OSR3_LTR 5201 0.0007 (1/1351) 0 * Os_TE_197549 Os_TE_197549 Chr6 2947443 2947442 + OSR3_LTR 5201 0.0006 (1/1611) 0 * Os_TE_197550 Os_TE_197539 Chr6 2944108 2944109 + STOWAWAY11_OS 292 0.0040 (9/2226) -1 * Os_TE_197538 Os_TE_197538 Chr6 2944107 2944106 - STOWAWAY11_OS 292 0.0045 (10/2224) 0 * Os_TE_197539 Os_TE_197534 Chr6 2943517 2943518 + CLOUD-4 520 0.0004 (1/2613) 0 * * Os_TE_197521 Chr6 2939864 2939863 - COPI2_LTR 4733 0.0405 (121/2991) 0 * * Os_TE_197506 Chr6 2933646 2933647 - ORSiTERT00200154 9386 0.0263 (76/2885) 0 * Os_TE_197505 Os_TE_197505 Chr6 2933640 2933639 + TRUNCATOR 2918 0.0334 (97/2901) 0 * Os_TE_197506 Os_TE_197492 Chr6 2927179 2927178 - SZ-25LTR 330 0.0034 (10/2980) 0 * * Os_TE_197478 Chr6 2924956 2924957 - COPIA2-LTR_OS 6433 0.0003 (1/2885) 0 * * Os_TE_197477 Chr6 2924863 2924864 + RIRE2_LTR 11306 0.0334 (96/2877) 0 * Os_TE_197476 Os_TE_197476 Chr6 2924859 2924858 - RIRE2_LTR 11306 0.0328 (95/2897) 0 * Os_TE_197477 Os_TE_197462 Chr6 2919800 2919799 + DS-RICE3N 525 0.0003 (1/2993) 0 * * Os_TE_197458 Chr6 2918393 2918394 + STOWAWAY47_OS 148 0.0033 (10/2997) 0 * * Os_TE_197438 Chr6 2911078 2911079 - COPIA2-LTR_OS 6433 0.0013 (4/2994) 0 * Os_TE_197437 Os_TE_197437 Chr6 2911074 2911073 + COPIA2-LTR_OS 6433 0.0013 (4/2981) 0 * Os_TE_197438 Os_TE_197406 Chr6 2898904 2898905 - COPIA2-LTR_OS 6433 0.0003 (1/2978) 0 * * Os_TE_197396 Chr6 2888241 2888242 - SPMLIKE 10989 0.0023 (7/2989) 0 * Os_TE_197395 Os_TE_197395 Chr6 2888239 2888238 + SPMLIKE 10989 0.0033 (10/2990) 0 * Os_TE_197396 Os_TE_197394 Chr6 2888124 2888125 + COPI2_LTR 4733 0.0003 (1/2983) 0 * * Os_TE_197387 Chr6 2885596 2885597 - TYPEM 227 0.0020 (6/2957) 0 * * Os_TE_197376 Chr6 2879026 2879027 + COPI2_LTR 4733 0.0007 (2/2988) 0 * Os_TE_197375 Os_TE_197375 Chr6 2879022 2879021 - COPI2_LTR 4733 0.0010 (3/2989) 0 * Os_TE_197376 Os_TE_197366 Chr6 2872566 2872567 - RETRO2_LTR 12874 0.0023 (7/2988) 0 * * Os_TE_197364 Chr6 2871032 2871033 - TRUNCATOR2_LTR 2904 0.0678 (203/2992) 0 * * Os_TE_197342 Chr6 2856870 2856869 + ORSgTEMT01601122 212 0.0020 (6/2991) 0 * Os_TE_197341 Os_TE_197341 Chr6 2856867 2856868 + ORSgTEMT01601122 212 0.0023 (7/2990) 0 * Os_TE_197342 Os_TE_197337 Chr6 2855295 2855296 - INDITTO 263 0.0010 (3/2961) 0 * Os_TE_197336 Os_TE_197336 Chr6 2855293 2855292 + INDITTO 263 0.0010 (3/2964) 0 * Os_TE_197337 Os_TE_197335 Chr6 2855068 2855069 + MPING 430 0.0003 (1/2935) 0 * Os_TE_197334 Os_TE_197334 Chr6 2855066 2855065 - MPING 430 0.0003 (1/2941) 0 * Os_TE_197335 Os_TE_197323 Chr6 2852433 2852434 - RETROFIT_LTR 4866 0.0007 (2/2929) 0 * Os_TE_197322 Os_TE_197322 Chr6 2852430 2852429 + ORSiTERTOOT00033 4884 0.0007 (2/2936) 0 * Os_TE_197323 Os_TE_197279 Chr6 2842548 2842549 + OSTE15 1168 0.0038 (10/2613) -1 * Os_TE_197278 Os_TE_197278 Chr6 2842547 2842546 + OSTE15 1168 0.0027 (7/2611) 0 * Os_TE_197279 Os_TE_197275 Chr6 2840995 2840996 + CPSC2_LTR 5202 0.0004 (1/2810) 0 * * Os_TE_197273 Chr6 2839639 2839638 - DS-RICE2N 613 0.0017 (5/2943) 0 * * Os_TE_197235 Chr6 2816070 2816071 + ORSiTERTOOT00296 5553 0.0020 (6/2989) 0 * Os_TE_197234 Os_TE_197234 Chr6 2816066 2816065 - SC-3_LTR 5748 0.0020 (6/2987) 0 * Os_TE_197235 Os_TE_197231 Chr6 2815363 2815362 + STOWAWAY21_OS 243 0.0169 (50/2967) 0 * Os_TE_197230 Os_TE_197230 Chr6 2815362 2815363 + ORSgTEMT01601122 212 0.0168 (50/2977) 0 * Os_TE_197231 Os_TE_197216 Chr6 2806411 2806412 + ORSgTETNOOT01834 251 0.5735 (1717/2994) 0 * * Os_TE_197215 Chr6 2806157 2806156 - ORSgTEMT01700936 149 0.6419 (1843/2871) 0 * Os_TE_197214 Os_TE_197214 Chr6 2806156 2806157 + STOWAWAY50_OS 174 0.6249 (1716/2746) 0 * Os_TE_197215 Os_TE_197208 Chr6 2805649 2805650 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_197207 Os_TE_197207 Chr6 2805645 2805644 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_197208 Os_TE_197201 Chr6 2801417 2801418 + ORSgTEMT00900319 250 0.6201 (1676/2703) 0 * * Os_TE_197200 Chr6 2801391 2801392 - MPING 430 0.0038 (10/2643) 0 * Os_TE_197199 Os_TE_197199 Chr6 2801389 2801388 + MPING 430 0.0048 (10/2064) 0 * Os_TE_197200 Os_TE_197197 Chr6 2800587 2800586 + STOWAWAY36_OS 268 0.5563 (1269/2281) 0 * * Os_TE_197193 Chr6 2798413 2799863 - MERMITE18C 1473 0.3760 (1086/2888) 1 Intact * Os_TE_197191 Chr6 2798286 2798287 + ORSgTEMT01601809 239 0.4587 (923/2012) 0 * * Os_TE_197184 Chr6 2796852 2796701 - ORSgTEMT01701591 154 0.3678 (1052/2860) 1 Intact * Os_TE_197163 Chr6 2785410 2785411 - CASTAWAY 364 0.0037 (11/2987) 0 * Os_TE_197162 Os_TE_197162 Chr6 2785407 2785406 - ORSgTEMT00600304 361 0.0037 (11/2985) 0 * Os_TE_197163 Os_TE_197145 Chr6 2778277 2776660 - SZ-55_LTR 10318 0.3623 (1048/2893) 1 Solo_LTR Os_TE_197144 Os_TE_197144 Chr6 2776660 2778277 + SZ-55_LTR 10318 0.3832 (1071/2795) 1 Solo_LTR Os_TE_197145 Os_TE_197131 Chr6 2765198 2765199 - AMYLTP 383 0.1486 (442/2974) 0 * Os_TE_197130 Os_TE_197130 Chr6 2765190 2765189 + AMYLTP 383 0.1430 (424/2966) 0 * Os_TE_197131 Os_TE_197124 Chr6 2764294 2764295 + ORSiTERTOOT00226 792 0.0003 (1/2933) 0 * * Os_TE_197077 Chr6 2759065 2759064 + OsSN3 183 0.0027 (7/2581) 0 * * Os_TE_197075 Chr6 2756595 2756596 - RIRE3_LTR 12054 0.2614 (69/264) -1 * * Os_TE_197069 Chr6 2755468 2755469 + STOWAWAY10_OS 259 0.0030 (8/2670) 0 * Os_TE_197068 Os_TE_197068 Chr6 2755467 2755466 - STOWAWAY10_OS 259 0.0019 (5/2665) 0 * Os_TE_197069 Os_TE_197063 Chr6 2753761 2753762 + ORSgTETNOOT01275 140 0.0037 (11/2993) 0 * * Os_TE_197053 Chr6 2750583 2750584 - RIREX_LTR 8828 0.0007 (2/2995) 0 * Os_TE_197052 Os_TE_197052 Chr6 2750579 2750578 + RIREX_LTR 8828 0.0007 (2/2997) 0 * Os_TE_197053 Os_TE_197048 Chr6 2747893 2747892 - COPI2_LTR 4733 0.0003 (1/2991) 0 * * Os_TE_197043 Chr6 2742236 2742235 + ORSgTEMT00700017 386 0.0007 (2/2895) 0 * Os_TE_197042 Os_TE_197042 Chr6 2742228 2742229 + ORSgTEMT00700017 386 0.0007 (2/2740) 0 * Os_TE_197043 Os_TE_197027 Chr6 2736958 2736957 + ORSgTEMT00800058 376 0.0034 (10/2975) 0 * * Os_TE_197026 Chr6 2736794 2736793 + NONAME 312 0.0013 (4/2979) 0 * * Os_TE_197022 Chr6 2734608 2734609 + INDITTO 263 0.6439 (1906/2960) 0 * Os_TE_197021 Os_TE_197021 Chr6 2734606 2734605 + ORSgTETNOOT02406 265 0.6459 (1924/2979) 0 * Os_TE_197022 Os_TE_197012 Chr6 2733688 2733687 + STOWAWAY51_OS 246 0.0034 (10/2976) 0 * Os_TE_197011 Os_TE_197011 Chr6 2733682 2733683 + ORSgTEMT01601591 242 0.0033 (10/2986) 0 * Os_TE_197012 Os_TE_196996 Chr6 2730326 2730327 + TOS17LTR 138 0.0017 (5/2997) 0 * Os_TE_196995 Os_TE_196995 Chr6 2730322 2730321 - TOS17LTR 138 0.0017 (5/2996) 0 * Os_TE_196996 Os_TE_196984 Chr6 2724161 2724160 + SEVERIN-2 1952 0.0003 (1/2968) 0 * * Os_TE_196980 Chr6 2722198 2721943 - STOWAWAY8_OS 259 0.4606 (1088/2362) 1 Intact * Os_TE_196975 Chr6 2721694 2721693 - ORSgTEMT01602413 239 0.6382 (1789/2803) 0 * Os_TE_196974 Os_TE_196974 Chr6 2721691 2721692 + ORSgTEMT01602669 216 0.6521 (1854/2843) 0 * Os_TE_196975 Os_TE_196966 Chr6 2716989 2717203 + STOWAWAY43_OS 233 0.4565 (1102/2414) 1 Intact * Os_TE_196965 Chr6 2716761 2716375 + ORSgTEMT00100291 345 0.4218 (1087/2577) 1 Intact * Os_TE_196954 Chr6 2710138 2709999 + ORSgTEMT00500852 140 0.8796 (2257/2566) 1 Intact * Os_TE_196949 Chr6 2707386 2707387 + ORSiTERTOOT00296 5553 0.0003 (1/2989) 0 * Os_TE_196948 Os_TE_196948 Chr6 2707382 2707381 - SC-3_LTR 5748 0.0007 (2/2989) 0 * Os_TE_196949 Os_TE_196946 Chr6 2705934 2705933 - ORSgTEMT01400038 210 0.1409 (419/2973) 0 * * Os_TE_196938 Chr6 2704975 2704974 + ORSgTEMT01601591 242 0.2819 (828/2937) 0 * Os_TE_196937 Os_TE_196937 Chr6 2704966 2704967 + STOWAWAY51_OS 246 0.2881 (853/2961) 0 * Os_TE_196938 Os_TE_196924 Chr6 2696951 2696950 - SC-8_LTR 4951 0.0003 (1/2986) 0 * * Os_TE_196907 Chr6 2689700 2690047 - STOWAWAY50_OS 174 0.8686 (2367/2725) 1 Intact * Os_TE_196863 Chr6 2663379 2663378 + ORSgTETNOOT00908 242 0.1110 (328/2954) 0 * * Os_TE_196858 Chr6 2658510 2658511 + ORSiTERTOOT00296 5553 0.0003 (1/2984) 0 * Os_TE_196857 Os_TE_196857 Chr6 2658506 2658505 - SC-3_LTR 5748 0.0003 (1/2983) 0 * Os_TE_196858 Os_TE_196824 Chr6 2641112 2641113 - SZ-4_LTR 5991 0.0010 (3/2898) 0 * Os_TE_196823 Os_TE_196823 Chr6 2641108 2641107 + SZ-4_LTR 5991 0.0007 (2/2882) 0 * Os_TE_196824 Os_TE_196822 Chr6 2640413 2640196 - ORSgTEMT02400246 177 0.3684 (1101/2989) 1 Intact Os_TE_196820 Os_TE_196820 Chr6 2640189 2640411 + ORSgTEMT02400014 229 0.3680 (1100/2989) 1 Intact Os_TE_196822 Os_TE_196812 Chr6 2639412 2639413 - SC-8_LTR 4951 0.0007 (2/2995) 0 * Os_TE_196811 Os_TE_196811 Chr6 2639408 2639407 + SC-8_LTR 4951 0.0007 (2/2998) 0 * Os_TE_196812 Os_TE_196798 Chr6 2632864 2632863 - UNIQUE 158 0.0040 (12/2979) 0 * * Os_TE_196757 Chr6 2611335 2611336 + RETRO2A_LTR 12895 0.5091 (1458/2864) 0 * * Os_TE_196717 Chr6 2592711 2592710 - MDR2 6967 0.0010 (3/2984) 0 * * Os_TE_196693 Chr6 2578246 2578247 - COPIA2-LTR_OS 6433 0.0014 (4/2936) 0 * Os_TE_196692 Os_TE_196692 Chr6 2578242 2578241 + COPIA2-LTR_OS 6433 0.0014 (4/2926) 0 * Os_TE_196693 Os_TE_196686 Chr6 2575016 2575015 - STOWAWAY51_OS 246 0.0007 (2/2992) 0 * Os_TE_196685 Os_TE_196685 Chr6 2575010 2575011 + STOWAWAY51_OS 246 0.0003 (1/2993) 0 * Os_TE_196686 Os_TE_196683 Chr6 2573729 2568278 - SC-3_LTR 5748 0.3607 (1078/2989) 1 Intact Os_TE_196682 Os_TE_196682 Chr6 2568077 2573729 + ORSiTERTOOT00296 5553 0.3603 (1076/2986) 1 Intact Os_TE_196683 Os_TE_196644 Chr6 2546592 2546593 - AMYLTP 383 0.0487 (145/2979) 0 * Os_TE_196643 Os_TE_196643 Chr6 2546584 2546583 + AMYLTP 383 0.0538 (161/2991) 0 * Os_TE_196644 Os_TE_196636 Chr6 2542971 2542970 - INDITTO 263 0.0013 (4/2994) 0 * * Os_TE_196619 Chr6 2539527 2539526 - SINE16_OS 116 0.5348 (1591/2975) 0 * * Os_TE_196610 Chr6 2532840 2532841 - TYPEU1 380 0.0007 (2/2981) 0 * * Os_TE_196608 Chr6 2532167 2532166 + STOWAWAY11_OS 292 0.0007 (2/2988) 0 * * Os_TE_196598 Chr6 2527592 2527593 + RIREX_LTR 8828 0.0564 (168/2981) 0 * * Os_TE_196584 Chr6 2525369 2521455 - RETROSAT4_LTR 13504 0.3575 (1064/2976) 1 Solo_LTR * Os_TE_196581 Chr6 2523786 2523787 + SZ-COM 1308 0.0036 (4/1105) 0 * * Os_TE_196580 Chr6 2521455 2525369 + RETROSAT4_LTR 13504 0.3525 (1041/2953) 1 Solo_LTR * Os_TE_196579 Chr6 2521431 2521432 + ORSgTEMT00600376 329 0.0003 (1/2927) 0 * Os_TE_196578 Os_TE_196578 Chr6 2521424 2521423 + ORSgTEMT00600272 361 0.0004 (1/2590) 0 * Os_TE_196579 Os_TE_196568 Chr6 2512442 2512443 + SC-8_LTR 4951 0.0010 (3/2988) 0 * Os_TE_196567 Os_TE_196567 Chr6 2512438 2512437 - SC-8_LTR 4951 0.0010 (3/2994) 0 * Os_TE_196568 Os_TE_196566 Chr6 2512310 2512311 - SC-3_LTR 5748 0.0003 (1/2988) 0 * Os_TE_196565 Os_TE_196565 Chr6 2512306 2512305 + ORSiTERTOOT00296 5553 0.0003 (1/2980) 0 * Os_TE_196566 Os_TE_196563 Chr6 2510139 2510140 - DASIA-2 1198 0.5574 (1510/2709) 0 * Os_TE_196562 Os_TE_196562 Chr6 2510131 2510130 + DASIA-2 1198 0.5670 (1562/2755) 0 * Os_TE_196563 Os_TE_196554 Chr6 2505387 2505388 - ORSgTEMT00900760 239 0.0017 (5/2867) 0 * * Os_TE_196553 Chr6 2504150 2504151 + NDNA1TNA_OS 334 0.0007 (2/2993) 0 * Os_TE_196552 Os_TE_196552 Chr6 2504149 2504148 - NDNA1TNA_OS 334 0.0007 (2/2989) 0 * Os_TE_196553 Os_TE_196550 Chr6 2500253 2500252 + TREP215 239 0.0015 (4/2724) 0 * * Os_TE_196537 Chr6 2494379 2494380 + ORSiTEMT03300001 145 0.5397 (1345/2492) 0 * * Os_TE_196536 Chr6 2494352 2479881 + SPMLIKE 10989 0.4142 (1040/2511) 1 Intact Os_TE_196516 Os_TE_196516 Chr6 2479881 2494352 - ORSgTETN00200001 10994 0.8748 (999/1142) 1 Intact Os_TE_196536 Os_TE_196506 Chr6 2477473 2477474 - LINE-5 431 0.0013 (4/2964) 0 * * Os_TE_196494 Chr6 2473644 2473645 + ORSgTEMT01601122 212 0.0010 (3/2978) 0 * * Os_TE_196487 Chr6 2472184 2472185 - INDITTO 263 0.0007 (2/2762) 0 * * Os_TE_196485 Chr6 2472111 2472110 + STOWAWAY44_OS 240 0.0004 (1/2731) 0 * * Os_TE_196456 Chr6 2462381 2462382 + COPIA2-LTR_OS 6433 0.0018 (5/2805) 0 * Os_TE_196455 Os_TE_196455 Chr6 2462377 2462376 - COPIA2-LTR_OS 6433 0.0014 (4/2806) 0 * Os_TE_196456 Os_TE_196442 Chr6 2459221 2459220 + SINE03_OS 360 0.0028 (3/1075) 0 * * Os_TE_196392 Chr6 2437613 2437612 + ORSgTEMT01601934 207 0.0014 (4/2955) 0 * * Os_TE_196351 Chr6 2410143 2409806 - ORSgTEMT00100799 337 0.3613 (1076/2978) 1 Intact Os_TE_196350 Os_TE_196350 Chr6 2409804 2410143 - ORSgTEMT00100242 351 0.4247 (1100/2590) 1 Intact Os_TE_196351 Os_TE_196342 Chr6 2405136 2405137 + ORSgTETNOOT00908 242 0.0003 (1/2979) 0 * Os_TE_196341 Os_TE_196341 Chr6 2405134 2405133 - ORSgTETNOOT00908 242 0.0003 (1/2979) 0 * Os_TE_196342 Os_TE_196340 Chr6 2404617 2404618 + COPIA3-LTR_OS 5061 0.0013 (4/2990) 0 * Os_TE_196339 Os_TE_196339 Chr6 2404613 2404612 - COPIA3-LTR_OS 5061 0.0013 (4/2993) 0 * Os_TE_196340 Os_TE_196295 Chr6 2388810 2388811 - LINE1-6_OS 6279 0.0004 (1/2599) 0 * * Os_TE_196280 Chr6 2386792 2386791 - CASTAWAY 364 0.0028 (7/2507) 0 * * Os_TE_196278 Chr6 2386588 2386589 - SEVERIN-2 1952 0.0550 (90/1635) 0 * * Os_TE_196257 Chr6 2364344 2364345 + ORSiTERTOOT00296 5553 0.0040 (12/2982) 0 * Os_TE_196256 Os_TE_196256 Chr6 2364340 2364339 - SC-3_LTR 5748 0.0040 (12/2983) 0 * Os_TE_196257 Os_TE_196247 Chr6 2357911 2357910 - ORSgTEMT01601432 239 0.0010 (3/2948) 0 * * Os_TE_196246 Chr6 2357498 2357499 + COPI2_LTR 4733 0.0003 (1/2993) 0 * Os_TE_196245 Os_TE_196245 Chr6 2357494 2357493 - COPI2_LTR 4733 0.0003 (1/2991) 0 * Os_TE_196246 Os_TE_196220 Chr6 2352206 2352205 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * * Os_TE_196218 Chr6 2351057 2351058 - AMYLTP 383 0.0055 (6/1089) 0 * Os_TE_196217 Os_TE_196217 Chr6 2351049 2351048 + AMYLTP 383 0.0065 (7/1085) 0 * Os_TE_196218 Os_TE_196215 Chr6 2350851 2350850 - CASTAWAY 364 0.5072 (1156/2279) 0 * * Os_TE_196200 Chr6 2342493 2342492 - TYPEU 362 0.0003 (1/2974) 0 * * Os_TE_196198 Chr6 2342398 2342397 - SZ-35LTR 3853 0.5868 (1747/2977) 0 * * Os_TE_196185 Chr6 2339406 2339405 - SZ-35LTR 3853 0.0014 (4/2937) 0 * * Os_TE_196126 Chr6 2302550 2302549 + ORSgTETNOOT02577 232 0.0014 (4/2857) 0 * * Os_TE_196075 Chr6 2273601 2273602 + MDR2 6967 0.0013 (4/2985) 0 * Os_TE_196074 Os_TE_196074 Chr6 2273593 2273592 + MDR2 6967 0.0013 (4/2985) 0 * Os_TE_196075 Os_TE_196047 Chr6 2257906 2257907 + CACTA-D 1038 0.0010 (3/2984) 0 * * Os_TE_196009 Chr6 2229589 2216690 + RETRO2A_LTR 12895 0.4173 (1228/2943) 1 Intact Os_TE_196003 Os_TE_196003 Chr6 2216690 2229589 - RETRO2_LTR 12874 0.3999 (1151/2878) 1 Intact Os_TE_196009 Os_TE_195994 Chr6 2214420 2214421 - COPI2_LTR 4733 0.5261 (1474/2802) 0 * * Os_TE_195981 Chr6 2210244 2210245 - COPIA2-LTR_OS 6433 0.0011 (3/2811) 0 * Os_TE_195980 Os_TE_195980 Chr6 2210240 2210239 + COPIA2-LTR_OS 6433 0.0007 (2/2803) 0 * Os_TE_195981 Os_TE_195971 Chr6 2205443 2205442 + COPI1_LTR 4721 0.0037 (11/2988) 0 * * Os_TE_195942 Chr6 2189317 2189318 + ORSgTEMT01701265 147 0.0003 (1/2992) 0 * * Os_TE_195931 Chr6 2188162 2188163 - MERMITE18E 1528 0.0045 (13/2898) 0 * Os_TE_195930 Os_TE_195930 Chr6 2188158 2188157 - MERMITE18E 1528 0.0028 (8/2895) 0 * Os_TE_195931 Os_TE_195909 Chr6 2180001 2180002 - ORSgTEMT00501447 126 0.0043 (13/2997) 0 * Os_TE_195908 Os_TE_195908 Chr6 2179999 2179998 + ORSgTEMT00500201 140 0.0040 (12/2997) 0 * Os_TE_195909 Os_TE_195907 Chr6 2179708 2179709 + ORSiTERTOOT00074 4935 0.0010 (3/2995) 0 * Os_TE_195906 Os_TE_195906 Chr6 2179704 2179703 - ORSiTERTOOT00074 4935 0.0010 (3/2995) 0 * Os_TE_195907 Os_TE_195904 Chr6 2179604 2179603 + MDR2 6967 0.0003 (1/2994) 0 * * Os_TE_195891 Chr6 2177093 2177092 - ORSgTEMT00901723 248 0.0040 (12/2994) 0 * * Os_TE_195882 Chr6 2173533 2173534 - TNR2A 152 0.0003 (1/2980) 0 * * Os_TE_195861 Chr6 2160834 2160833 + TELIA 141 0.0004 (1/2786) 0 * * Os_TE_195846 Chr6 2152600 2152601 - OSTONOR1_LTR 6440 0.0003 (1/2999) 0 * Os_TE_195845 Os_TE_195845 Chr6 2152596 2152595 + OSTONOR1_LTR 6440 0.0003 (1/2999) 0 * Os_TE_195846 Os_TE_195844 Chr6 2151950 2151951 - COPI2_LTR 4733 0.0007 (2/2977) 0 * Os_TE_195843 Os_TE_195843 Chr6 2151946 2151945 + COPI2_LTR 4733 0.0007 (2/2974) 0 * Os_TE_195844 Os_TE_195814 Chr6 2139925 2139799 - OSTE18 129 0.4202 (1254/2984) 1 Intact Os_TE_195812 Os_TE_195812 Chr6 2139797 2139923 + OSTE18 129 0.4205 (1254/2982) 1 Intact Os_TE_195814 Os_TE_195811 Chr6 2139712 2139713 - MPING 430 0.0003 (1/2982) 0 * Os_TE_195810 Os_TE_195810 Chr6 2139710 2139709 + MPING 430 0.0003 (1/2987) 0 * Os_TE_195811 Os_TE_195806 Chr6 2137264 2137265 - INDITTO 263 0.0277 (83/2993) 0 * Os_TE_195805 Os_TE_195805 Chr6 2137262 2137261 + INDITTO 263 0.0284 (85/2993) 0 * Os_TE_195806 Os_TE_195781 Chr6 2128868 2128869 - RIREX_LTR 8828 0.0007 (2/2829) 0 * Os_TE_195780 Os_TE_195780 Chr6 2128864 2128863 + RIREX_LTR 8828 0.0007 (2/2831) 0 * Os_TE_195781 Os_TE_195777 Chr6 2128297 2128298 - INDITTO 263 0.0003 (1/2984) 0 * * Os_TE_195775 Chr6 2128237 2128238 - SEVERIN-2 1952 0.0013 (4/2984) 0 * * Os_TE_195765 Chr6 2127266 2127267 + COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * * Os_TE_195754 Chr6 2125521 2125522 - SZ-55_LTR 10318 0.0003 (1/2992) 0 * Os_TE_195753 Os_TE_195753 Chr6 2125517 2125516 + SZ-55_LTR 10318 0.0003 (1/2992) 0 * Os_TE_195754 Os_TE_195745 Chr6 2120430 2120431 + STOWAWAY41_OS 264 0.0003 (1/2964) 0 * * Os_TE_195738 Chr6 2118430 2118431 + COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * Os_TE_195737 Os_TE_195737 Chr6 2118426 2118425 - COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * Os_TE_195738 Os_TE_195734 Chr6 2117878 2117877 - ORSgTEMT00900099 250 0.6186 (1849/2989) 0 * * Os_TE_195731 Chr6 2117119 2117118 - MERMITED 1572 0.0044 (13/2949) 0 * * Os_TE_195730 Chr6 2117106 2116899 + ORSgTEMT02400041 225 0.4094 (1182/2887) 1 Intact * Os_TE_195718 Chr6 2112625 2112624 - ORSgTEMT00900099 250 0.0059 (7/1190) 0 * Os_TE_195717 Os_TE_195717 Chr6 2112619 2112620 - ORSgTEMT00901723 248 0.0039 (8/2051) 0 * Os_TE_195718 Os_TE_195714 Chr6 2111859 2111860 - MERMITE18B 1306 0.0082 (8/977) 0 * * Os_TE_195713 Chr6 2110534 2110535 + ORSgTEMT00501455 153 0.0025 (7/2775) 0 * * Os_TE_195711 Chr6 2110357 2110356 - STOWAWAY51_OS 246 0.0025 (7/2784) 0 * * Os_TE_195710 Chr6 2108099 2108100 - RIREX_LTR 8828 0.0050 (6/1201) 0 * Os_TE_195709 Os_TE_195709 Chr6 2108095 2108094 + RIREX_LTR 8828 0.0050 (6/1199) 0 * Os_TE_195710 Os_TE_195701 Chr6 2104412 2104413 - SC-3_LTR 5748 0.0003 (1/2994) 0 * Os_TE_195700 Os_TE_195700 Chr6 2104408 2104407 + ORSiTERTOOT00296 5553 0.0003 (1/2994) 0 * Os_TE_195701 Os_TE_195692 Chr6 2096835 2096836 + SC-8_LTR 4951 0.0003 (1/2997) 0 * Os_TE_195691 Os_TE_195691 Chr6 2096831 2096830 - SC-8_LTR 4951 0.0003 (1/2996) 0 * Os_TE_195692 Os_TE_195687 Chr6 2094739 2094740 + AMYLTP 383 0.0226 (65/2877) 0 * Os_TE_195686 Os_TE_195686 Chr6 2094731 2094730 - AMYLTP 383 0.0239 (69/2886) 0 * Os_TE_195687 Os_TE_195679 Chr6 2087879 2087878 - ORSgTEMT01400014 209 0.0034 (10/2970) 0 * Os_TE_195678 Os_TE_195678 Chr6 2087876 2087877 - ORSgTEMT01400006 213 0.0044 (13/2974) 0 * Os_TE_195679 Os_TE_195675 Chr6 2087386 2087387 - RIRE2_LTR 11306 0.0543 (162/2984) 0 * Os_TE_195674 Os_TE_195674 Chr6 2087382 2087381 - ORSgTERT00201216 11284 0.0570 (170/2982) 0 * Os_TE_195675 Os_TE_195645 Chr6 2041689 2041690 - STOWAWAY44_OS 240 0.0004 (1/2854) 0 * * Os_TE_195642 Chr6 2035337 2035338 - MPING 430 0.0258 (75/2904) 0 * Os_TE_195641 Os_TE_195641 Chr6 2035335 2035334 + MPING 430 0.0250 (74/2961) 0 * Os_TE_195642 Os_TE_195581 Chr6 2006449 2006450 - SC-8_LTR 4951 0.0003 (1/2979) 0 * Os_TE_195580 Os_TE_195580 Chr6 2006445 2006444 + SC-8_LTR 4951 0.0003 (1/2982) 0 * Os_TE_195581 Os_TE_195560 Chr6 1987680 1987681 - RETROSAT5_LTR 13878 0.0135 (40/2973) 0 * Os_TE_195559 Os_TE_195559 Chr6 1987676 1987675 + ORSiTERT00200145 12238 0.0145 (43/2975) 0 * Os_TE_195560 Os_TE_195542 Chr6 1972239 1972240 + RIREX_LTR 8828 0.0003 (1/2993) 0 * Os_TE_195541 Os_TE_195541 Chr6 1972235 1972234 - RIREX_LTR 8828 0.0003 (1/2995) 0 * Os_TE_195542 Os_TE_195525 Chr6 1968526 1968527 - COPI2_LTR 4733 0.0007 (2/2984) 0 * Os_TE_195524 Os_TE_195524 Chr6 1968522 1968521 + COPI2_LTR 4733 0.0007 (2/2985) 0 * Os_TE_195525 Os_TE_195521 Chr6 1967008 1967009 + ORSgTEMT03600118 431 0.0003 (1/2974) 0 * * Os_TE_195504 Chr6 1961944 1961943 - COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * * Os_TE_195500 Chr6 1958786 1958785 - ORSgTEMT00502154 143 0.0003 (1/2998) 0 * * Os_TE_195475 Chr6 1955391 1955392 + HARB-1_OS 5166 0.0023 (7/2992) 0 * Os_TE_195474 Os_TE_195474 Chr6 1955389 1955388 - HARB-1_OS 5166 0.0023 (7/2994) 0 * Os_TE_195475 Os_TE_195462 Chr6 1951485 1951486 + SC-8_LTR 4951 0.0003 (1/2973) 0 * * Os_TE_195457 Chr6 1949414 1949415 - ORSgTERTOOT00072 10582 0.0003 (1/2950) 0 * * Os_TE_195452 Chr6 1944567 1944568 + SC-8_LTR 4951 0.0003 (1/2978) 0 * Os_TE_195451 Os_TE_195451 Chr6 1944563 1944562 - SC-8_LTR 4951 0.0003 (1/2977) 0 * Os_TE_195452 Os_TE_195441 Chr6 1934954 1934955 + ORSiTERTOOT00226 792 0.0003 (1/2999) 0 * Os_TE_195440 Os_TE_195440 Chr6 1934950 1934949 - SZ-22_LTR 4403 0.0003 (1/2998) 0 * Os_TE_195441 Os_TE_195435 Chr6 1931842 1931841 - TELIA 141 0.0007 (2/2985) 0 * * Os_TE_195433 Chr6 1930949 1930950 + ORSiTERTOOT00381 4988 0.0010 (3/2990) 0 * Os_TE_195432 Os_TE_195432 Chr6 1930945 1930944 - SC-8_LTR 4951 0.0010 (3/2981) 0 * Os_TE_195433 Os_TE_195429 Chr6 1928791 1928792 + INDITTO 263 0.0003 (1/2961) 0 * * Os_TE_195415 Chr6 1923554 1923885 + NDNA1TNA_OS 334 0.3803 (1133/2979) 1 Intact * Os_TE_195414 Chr6 1923296 1923151 - ORSgTEMT00501384 148 0.3799 (1132/2980) 1 Intact Os_TE_195412 Os_TE_195412 Chr6 1923145 1923291 - ORSgTEMT00501763 151 0.3864 (1134/2935) 1 Intact Os_TE_195414 Os_TE_195403 Chr6 1921632 1921879 - ORSgTEMT00901723 248 0.3814 (1127/2955) 1 Intact * Os_TE_195401 Chr6 1919776 1919777 - COPI2_LTR 4733 0.0003 (1/2988) 0 * Os_TE_195400 Os_TE_195400 Chr6 1919772 1919771 + COPI2_LTR 4733 0.0003 (1/2988) 0 * Os_TE_195401 Os_TE_195399 Chr6 1919597 1919598 - RIRE2_LTR 11306 0.0010 (3/2955) 0 * Os_TE_195398 Os_TE_195398 Chr6 1919593 1919592 + RIRE2_LTR 11306 0.0010 (3/2954) 0 * Os_TE_195399 Os_TE_195391 Chr6 1918167 1918168 + ORSgTEMT02000045 197 0.0040 (11/2723) 0 * * Os_TE_195383 Chr6 1917116 1917356 + ORSgTETNOOT00908 242 0.4439 (1325/2985) 1 Intact * Os_TE_195376 Chr6 1915390 1915391 + ORSiTERTOOT00296 5553 0.0003 (1/2990) 0 * * Os_TE_195374 Chr6 1913583 1913582 - ORSgTEMT02400246 177 0.0003 (1/2971) 0 * Os_TE_195373 Os_TE_195373 Chr6 1913582 1913583 - TYPEM 227 0.0003 (1/2959) 0 * Os_TE_195374 Os_TE_195372 Chr6 1913235 1913236 - ORSgTEMT01602413 239 0.0040 (12/2975) 0 * * Os_TE_195371 Chr6 1913080 1913081 - MERMITEA 1710 0.0013 (4/2988) 0 * Os_TE_195370 Os_TE_195370 Chr6 1913072 1913071 - MERMITEA 1710 0.0010 (3/2980) 0 * Os_TE_195371 Os_TE_195361 Chr6 1905147 1904372 + MUDRN1_OS 764 0.4385 (1304/2974) 1 Intact Os_TE_195360 Os_TE_195360 Chr6 1904372 1905147 - MUDRN1_OS 764 0.4387 (1306/2977) 1 Intact Os_TE_195361 Os_TE_195332 Chr6 1892283 1892284 - SZ-67LTR 1540 0.0010 (3/2987) 0 * * Os_TE_195302 Chr6 1871792 1871791 - ORSgTEMT01400022 212 0.4566 (1299/2845) 0 * * Os_TE_195301 Chr6 1871343 1871342 + STOWAWAY51_OS 246 0.0017 (5/2906) 0 * Os_TE_195300 Os_TE_195300 Chr6 1871337 1871338 + ORSgTEMT01601591 242 0.0017 (5/2914) 0 * Os_TE_195301 Os_TE_195297 Chr6 1871125 1871124 + ORSgTEMT01601122 212 0.4828 (1428/2958) 0 * * Os_TE_195295 Chr6 1871083 1871084 + MPING 430 0.0003 (1/2956) 0 * Os_TE_195294 Os_TE_195294 Chr6 1871081 1871080 - MPING 430 0.0004 (1/2798) 0 * Os_TE_195295 Os_TE_195285 Chr6 1868195 1868196 + ORSgTEMT00700017 386 0.0007 (2/2993) 0 * * Os_TE_195282 Chr6 1864463 1864462 - NDNA1TNA_OS 334 0.0024 (7/2913) 0 * * Os_TE_195281 Chr6 1864454 1864061 + ORSgTEMT00600376 329 0.4873 (1306/2680) 1 Intact * Os_TE_195275 Chr6 1863716 1864077 + ORSgTEMT00600272 361 0.4529 (1342/2963) 1 Intact * Os_TE_195274 Chr6 1863633 1863632 - ORSgTEMT00100799 337 0.4890 (1442/2949) 0 * Os_TE_195273 Os_TE_195273 Chr6 1863630 1863631 + NDNA1TNA_OS 334 0.4827 (1413/2927) 0 * Os_TE_195274 Os_TE_195271 Chr6 1863555 1863343 + ORSgTEMT00901405 217 0.4621 (1346/2913) 1 Intact * Os_TE_195260 Chr6 1862255 1862040 + ORSgTEMT00900053 249 0.4500 (1327/2949) 1 Intact * Os_TE_195251 Chr6 1859231 1859232 - SC-3_LTR 5748 0.0003 (1/2986) 0 * Os_TE_195250 Os_TE_195250 Chr6 1859227 1859226 + ORSiTERTOOT00296 5553 0.0003 (1/2981) 0 * Os_TE_195251 Os_TE_195222 Chr6 1848104 1848105 + STOWAWAY1_OS 149 0.0040 (12/2973) 0 * * Os_TE_195214 Chr6 1844042 1844041 - HELITRON7_OS 10153 0.0077 (23/2976) 0 * Os_TE_195213 Os_TE_195213 Chr6 1844038 1844039 + HELITRON7_OS 10153 0.0074 (22/2972) 0 * Os_TE_195214 Os_TE_195177 Chr6 1828575 1828576 + MPING 430 0.0040 (12/2970) 0 * Os_TE_195176 Os_TE_195176 Chr6 1828573 1828572 - MPING 430 0.0040 (12/2973) 0 * Os_TE_195177 Os_TE_195175 Chr6 1828414 1828413 - CENTRE 280 0.0003 (1/2982) 0 * * Os_TE_195171 Chr6 1828119 1828120 + SPMLIKE 10989 0.0003 (1/2981) 0 * * Os_TE_195169 Chr6 1827958 1827959 - COPIA2-LTR_OS 6433 0.0003 (1/2975) 0 * Os_TE_195168 Os_TE_195168 Chr6 1827954 1827953 + COPIA2-LTR_OS 6433 0.0003 (1/2980) 0 * Os_TE_195169 Os_TE_195167 Chr6 1827865 1827864 + ORSgTERT00200981 4035 0.0007 (2/2975) 0 * * Os_TE_195150 Chr6 1814523 1814524 + COPIA2-LTR_OS 6433 0.0078 (23/2952) 0 * Os_TE_195149 Os_TE_195149 Chr6 1814519 1814518 - COPIA2-LTR_OS 6433 0.0086 (25/2903) 0 * Os_TE_195150 Os_TE_195112 Chr6 1801827 1801828 + COPIA2-LTR_OS 6433 0.0007 (2/2995) 0 * Os_TE_195111 Os_TE_195111 Chr6 1801823 1801822 - COPIA2-LTR_OS 6433 0.0007 (2/2994) 0 * Os_TE_195112 Os_TE_195106 Chr6 1800190 1800189 + SINE8_OS 120 0.0003 (1/2977) 0 * * Os_TE_195090 Chr6 1796548 1796549 - RETRO1_LTR 8314 0.0054 (16/2974) 0 * Os_TE_195089 Os_TE_195089 Chr6 1796544 1796543 + RETRO2A_LTR 12895 0.0057 (17/2968) 0 * Os_TE_195090 Os_TE_195086 Chr6 1794451 1794452 - SZ-55_LTR 10318 0.0003 (1/2994) 0 * Os_TE_195085 Os_TE_195085 Chr6 1794447 1794446 + SZ-55_LTR 10318 0.0003 (1/2994) 0 * Os_TE_195086 Os_TE_195079 Chr6 1792688 1792689 + ORSgTETNOOT01275 140 0.0003 (1/2998) 0 * * Os_TE_195076 Chr6 1791913 1791914 + INDITTO 263 0.0053 (16/2997) 0 * Os_TE_195075 Os_TE_195075 Chr6 1791911 1791910 - INDITTO 263 0.0053 (16/2995) 0 * Os_TE_195076 Os_TE_195066 Chr6 1789998 1789999 - COPIA2-LTR_OS 6433 0.0010 (3/2986) 0 * Os_TE_195065 Os_TE_195065 Chr6 1789994 1789993 + COPIA2-LTR_OS 6433 0.0010 (3/2986) 0 * Os_TE_195066 Os_TE_195048 Chr6 1786819 1786818 - NDNA2TNA_OS 346 0.4998 (1465/2931) 0 * * Os_TE_195044 Chr6 1786284 1786283 + BUHUI 375 0.0013 (4/2997) 0 * Os_TE_195043 Os_TE_195043 Chr6 1786266 1786267 - BUHUI 375 0.0013 (4/2997) 0 * Os_TE_195044 Os_TE_195032 Chr6 1780290 1780291 + ORSgTETNOOT01219 231 0.0004 (1/2348) 0 * * Os_TE_195020 Chr6 1778637 1778638 - STOWAWAY51_OS 246 0.0003 (1/2991) 0 * * Os_TE_194995 Chr6 1768154 1768155 - ORSiTERTOOT00441 4741 0.0007 (2/2998) 0 * Os_TE_194994 Os_TE_194994 Chr6 1768150 1768149 + ORSiTERTOOT00441 4741 0.0007 (2/2998) 0 * Os_TE_194995 Os_TE_194981 Chr6 1765147 1765148 + ORSiTERTOOT00097 759 0.0003 (1/2927) 0 * Os_TE_194980 Os_TE_194980 Chr6 1765143 1765142 - SZ-22_LTR 4403 0.0003 (1/2945) 0 * Os_TE_194981 Os_TE_194979 Chr6 1764743 1764744 - SZ-22_LTR 4403 0.0003 (1/2990) 0 * Os_TE_194978 Os_TE_194978 Chr6 1764739 1764738 + ORSiTERTOOT00226 792 0.0003 (1/2992) 0 * Os_TE_194979 Os_TE_194976 Chr6 1764408 1764407 - DNAUN1_OS 408 0.0007 (2/2993) 0 * * Os_TE_194956 Chr6 1756653 1756654 - SC-8_LTR 4951 0.0003 (1/2990) 0 * Os_TE_194955 Os_TE_194955 Chr6 1756649 1756648 + SC-8_LTR 4951 0.0003 (1/2996) 0 * Os_TE_194956 Os_TE_194935 Chr6 1749476 1749477 - ORSgTETNOOT00544 147 0.0007 (2/2935) -1 * * Os_TE_194904 Chr6 1738538 1738537 - COPIA2-LTR_OS 6433 0.0003 (1/2980) 0 * * Os_TE_194900 Chr6 1736932 1736933 + ORSgTETNOOT00032 218 0.0007 (2/2924) 0 * * Os_TE_194855 Chr6 1719336 1719337 + ORSgTEMT00901844 250 0.0003 (1/2956) 0 * * Os_TE_194818 Chr6 1705281 1705280 + KIDDOC 275 0.0010 (3/2997) 0 * * Os_TE_194816 Chr6 1702779 1702778 - ORSiTERTOOT00214 738 0.0023 (7/2984) 0 * * Os_TE_194815 Chr6 1699494 1699495 - RETROFIT_LTR 4866 0.0003 (1/2978) 0 * Os_TE_194814 Os_TE_194814 Chr6 1699491 1699490 + ORSiTERTOOT00033 4884 0.0003 (1/2972) 0 * Os_TE_194815 Os_TE_194810 Chr6 1698946 1698947 + ORSgTEMT01601983 238 0.0010 (3/2987) 0 * * Os_TE_194807 Chr6 1697297 1697298 + HARB-N1_OS 2589 0.0010 (3/2981) 0 * Os_TE_194806 Os_TE_194806 Chr6 1697295 1697294 - HARB-N1_OS 2589 0.0010 (3/2980) 0 * Os_TE_194807 Os_TE_194805 Chr6 1697117 1697118 + NDNA2TNA_OS 346 0.0007 (2/2970) 0 * Os_TE_194804 Os_TE_194804 Chr6 1697116 1697115 - NDNA2TNA_OS 346 0.0010 (3/2966) 0 * Os_TE_194805 Os_TE_194798 Chr6 1695808 1695809 - COPI2_LTR 4733 0.0003 (1/2997) 0 * Os_TE_194797 Os_TE_194797 Chr6 1695804 1695803 + COPI2_LTR 4733 0.0003 (1/2997) 0 * Os_TE_194798 Os_TE_194796 Chr6 1695727 1695728 - COPIA2-LTR_OS 6433 0.0014 (4/2916) 0 * Os_TE_194795 Os_TE_194795 Chr6 1695723 1695722 + COPIA2-LTR_OS 6433 0.0013 (4/2998) 0 * Os_TE_194796 Os_TE_194790 Chr6 1691856 1691857 + MPING 430 0.0027 (8/2988) 0 * Os_TE_194789 Os_TE_194789 Chr6 1691854 1691853 - MPING 430 0.0027 (8/2990) 0 * Os_TE_194790 Os_TE_194788 Chr6 1690693 1690694 - COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_194787 Os_TE_194787 Chr6 1690689 1690688 + COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_194788 Os_TE_194744 Chr6 1673600 1673254 - NDNA2TNA_OS 346 0.3006 (898/2987) 1 Intact Os_TE_194741 Os_TE_194741 Chr6 1673254 1673600 + NDNA2TNA_OS 346 0.3020 (904/2993) 1 Intact Os_TE_194744 Os_TE_194731 Chr6 1670773 1670774 + F770 284 0.0067 (20/2991) 0 * * Os_TE_194717 Chr6 1666430 1666431 + RETROSAT2LTR 12796 0.4076 (1209/2966) 0 * * Os_TE_194701 Chr6 1657206 1657205 - TYPEM 227 0.0450 (134/2979) 0 * Os_TE_194700 Os_TE_194700 Chr6 1657205 1657206 - ORSgTEMT02400246 177 0.0455 (136/2986) 0 * Os_TE_194701 Os_TE_194697 Chr6 1656538 1656537 + RIREX_LTR 8828 0.0003 (1/2959) 0 * * Os_TE_194692 Chr6 1650144 1650145 - SC-3_LTR 5748 0.0070 (21/2994) 0 * Os_TE_194691 Os_TE_194691 Chr6 1650140 1650139 + ORSiTERTOOT00296 5553 0.0070 (21/2995) 0 * Os_TE_194692 Os_TE_194679 Chr6 1645049 1645050 + MERMITED 1572 0.0054 (16/2984) 0 * Os_TE_194678 Os_TE_194678 Chr6 1645043 1645042 + MERMITEJ 1498 0.0057 (17/2987) 0 * Os_TE_194679 Os_TE_194635 Chr6 1625996 1625995 + RETRO2A_LTR 12895 0.0753 (225/2990) 0 * * Os_TE_194617 Chr6 1622583 1622584 - COPIA2-LTR_OS 6433 0.0144 (43/2977) 0 * Os_TE_194616 Os_TE_194616 Chr6 1622579 1622578 + COPIA2-LTR_OS 6433 0.0148 (44/2968) 0 * Os_TE_194617 Os_TE_194596 Chr6 1608060 1608059 + ORSiTERTOOT00296 5553 0.0003 (1/2987) 0 * * Os_TE_194595 Chr6 1606930 1606929 + STOWAWAY44_OS 240 0.0003 (1/2985) 0 * * Os_TE_194574 Chr6 1600661 1600660 - ORSgTEMT01400019 216 0.0033 (10/2989) 0 * * Os_TE_194568 Chr6 1599120 1598776 - NDNA2TNA_OS 346 0.3122 (933/2988) 1 Intact * Os_TE_194565 Chr6 1597850 1597851 - SC-8_LTR 4951 0.0003 (1/2995) 0 * Os_TE_194564 Os_TE_194564 Chr6 1597846 1597845 + SC-8_LTR 4951 0.0003 (1/2995) 0 * Os_TE_194565 Os_TE_194562 Chr6 1597743 1597744 + ORSiTERTOOT00296 5553 0.0003 (1/2996) 0 * Os_TE_194561 Os_TE_194561 Chr6 1597739 1597738 - SC-3_LTR 5748 0.0003 (1/2995) 0 * Os_TE_194562 Os_TE_194554 Chr6 1587972 1587973 + ORSgTEMT00101341 314 0.4337 (919/2119) 0 * Os_TE_194553 Os_TE_194553 Chr6 1587971 1587970 - NDNA1TNA_OS 334 0.3100 (926/2987) 0 * Os_TE_194554 Os_TE_194532 Chr6 1574213 1574212 + ORSgTEMT00500260 149 0.0270 (79/2931) 0 * * Os_TE_194531 Chr6 1574100 1574099 + OSTONOR1_LTR 6440 0.0877 (257/2932) 0 * * Os_TE_194527 Chr6 1573237 1573238 - HATOS1 3488 0.0003 (1/2917) 0 * Os_TE_194526 Os_TE_194526 Chr6 1573230 1573229 + QINNIU 528 0.0003 (1/2914) 0 * Os_TE_194527 Os_TE_194502 Chr6 1565239 1565238 - SZ-35LTR 3853 0.0004 (1/2856) 0 * * Os_TE_194499 Chr6 1562097 1562098 - RIREX_LTR 8828 0.0003 (1/2904) 0 * Os_TE_194498 Os_TE_194498 Chr6 1562093 1562092 + RIREX_LTR 8828 0.0003 (1/2904) 0 * Os_TE_194499 Os_TE_194494 Chr6 1560457 1560458 - OSTONOR1_LTR 6440 0.0003 (1/2996) 0 * * Os_TE_194486 Chr6 1554566 1554340 - ORSgTEMT00901723 248 0.2146 (581/2707) 1 Intact * Os_TE_194482 Chr6 1553641 1553640 - COPIA2-LTR_OS 6433 0.0003 (1/2909) 0 * * Os_TE_194481 Chr6 1553603 1553602 + ORSgTEMT01602250 243 0.7893 (2296/2909) 0 * Os_TE_194480 Os_TE_194480 Chr6 1553600 1553601 + ORSgTEMT01600665 236 0.7917 (2326/2938) 0 * Os_TE_194481 Os_TE_194457 Chr6 1546987 1546988 - RETRO2_LTR 12874 0.0003 (1/2958) 0 * Os_TE_194456 Os_TE_194456 Chr6 1546983 1546982 + RETRO2_LTR 12874 0.0003 (1/2965) 0 * Os_TE_194457 Os_TE_194432 Chr6 1529937 1530081 + TNR2A 152 0.2159 (642/2974) 1 Intact * Os_TE_194408 Chr6 1518122 1518123 - STOWAWAY51_OS 246 0.0003 (1/2993) 0 * * Os_TE_194395 Chr6 1507784 1507783 - ORSgTERT00200430 428 0.0003 (1/2991) 0 * * Os_TE_194386 Chr6 1502511 1502512 - SZ-4_LTR 5991 0.0003 (1/2954) 0 * * Os_TE_194372 Chr6 1492903 1492902 + ORSgTEMT01602181 239 0.0161 (48/2977) 0 * Os_TE_194371 Os_TE_194371 Chr6 1492900 1492901 - ORSgTEMT01601768 238 0.0155 (46/2973) 0 * Os_TE_194372 Os_TE_194340 Chr6 1475734 1475733 + OSTE22 2037 0.0032 (9/2829) 0 * * Os_TE_194321 Chr6 1469919 1469920 - RIRE2_LTR 11306 0.0605 (180/2973) 0 * Os_TE_194320 Os_TE_194320 Chr6 1469915 1469914 - ORSgTERT00201216 11284 0.0575 (171/2975) 0 * Os_TE_194321 Os_TE_194316 Chr6 1469249 1469250 - RIREX_LTR 8828 0.0027 (8/2999) 0 * Os_TE_194315 Os_TE_194315 Chr6 1469245 1469244 + RIREX_LTR 8828 0.0027 (8/2999) 0 * Os_TE_194316 Os_TE_194290 Chr6 1454326 1454327 - NDNA1TNA_OS 334 0.0018 (5/2826) 0 * * Os_TE_194281 Chr6 1453028 1453029 - MERMITE18B 1306 0.0040 (12/2970) 0 * * Os_TE_194278 Chr6 1452993 1452992 - OSTE24 683 0.0003 (1/2977) 0 * * Os_TE_194270 Chr6 1450073 1450074 - MPING 430 0.0003 (1/2953) 0 * Os_TE_194269 Os_TE_194269 Chr6 1450071 1450070 + MPING 430 0.0003 (1/2932) 0 * Os_TE_194270 Os_TE_194257 Chr6 1445329 1445330 + AMYLTP 383 0.0020 (6/2995) 0 * Os_TE_194256 Os_TE_194256 Chr6 1445321 1445320 - AMYLTP 383 0.0020 (6/2964) 0 * Os_TE_194257 Os_TE_194254 Chr6 1444258 1444257 + ORSiTERTOOT00296 5553 0.0003 (1/2991) 0 * * Os_TE_194231 Chr6 1435795 1435796 - JOUZHENA 607 0.0581 (170/2924) 0 * * Os_TE_194216 Chr6 1432831 1432832 + MPING 430 0.0003 (1/2973) 0 * Os_TE_194215 Os_TE_194215 Chr6 1432829 1432828 - MPING 430 0.0003 (1/2980) 0 * Os_TE_194216 Os_TE_194213 Chr6 1432586 1432585 - COPIA2-LTR_OS 6433 0.0007 (2/2966) 0 * * Os_TE_194206 Chr6 1431388 1428406 + TRUNCATOR 2918 0.2913 (869/2983) 1 Intact Os_TE_194202 Os_TE_194202 Chr6 1428402 1431388 - TRUNCATOR 2918 0.2696 (786/2915) 1 Intact Os_TE_194206 Os_TE_194190 Chr6 1423281 1423280 - RETRO2_LTR 12874 0.0588 (175/2975) 0 * * Os_TE_194188 Chr6 1422771 1422772 + OSTE33 1012 0.0010 (3/2988) 0 * * Os_TE_194173 Chr6 1413575 1413574 + ORSiTERTOOT00101 3870 0.0003 (1/2906) 0 * * Os_TE_194171 Chr6 1412584 1412583 - NDNA1TNA_OS 334 0.0152 (45/2955) 0 * Os_TE_194170 Os_TE_194170 Chr6 1412553 1412554 + NDNA1TNA_OS 334 0.0153 (45/2940) 0 * Os_TE_194171 Os_TE_194163 Chr6 1408686 1408687 + COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_194162 Os_TE_194162 Chr6 1408682 1408681 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_194163 Os_TE_194161 Chr6 1408347 1408348 + RIREX_LTR 8828 0.0003 (1/2995) 0 * Os_TE_194160 Os_TE_194160 Chr6 1408343 1408342 - RIREX_LTR 8828 0.0003 (1/2992) 0 * Os_TE_194161 Os_TE_194142 Chr6 1397410 1397409 + ORSgTETNOOT01834 251 0.0004 (1/2806) 0 * * Os_TE_194114 Chr6 1375812 1375813 - OSTE20 496 0.0131 (38/2894) 0 * Os_TE_194113 Os_TE_194113 Chr6 1375808 1375807 - OSTE20 496 0.0139 (40/2887) 0 * Os_TE_194114 Os_TE_194106 Chr6 1370852 1370853 + ORSgTERT00201382 11280 0.0252 (75/2972) 0 * * Os_TE_194087 Chr6 1356039 1356040 - MERMITE18B 1306 0.6778 (1929/2846) 0 * * Os_TE_194057 Chr6 1351343 1351344 - TYPEM 227 0.0326 (86/2637) 0 * * Os_TE_194055 Chr6 1349166 1349167 + COPIA2-LTR_OS 6433 0.0127 (38/2995) 0 * Os_TE_194054 Os_TE_194054 Chr6 1349162 1349161 - COPIA2-LTR_OS 6433 0.0140 (42/2997) 0 * Os_TE_194055 Os_TE_194052 Chr6 1346856 1346857 - TNR12 528 0.0143 (12/841) 0 * * Os_TE_194051 Chr6 1346504 1346505 + OLO24 345 0.0010 (2/2077) 0 * * Os_TE_194047 Chr6 1342562 1342563 - MIDWAY 985 0.0134 (40/2995) 0 * * Os_TE_193982 Chr6 1293469 1293468 - ORSiTERTOOT00271 11428 0.0146 (12/823) 0 * * Os_TE_193981 Chr6 1289857 1289858 - TNR2A 152 0.0013 (4/2994) 0 * * Os_TE_193978 Chr6 1288932 1288931 - ORSgTERT00201216 11284 0.0204 (61/2991) 0 * * Os_TE_193977 Chr6 1288425 1288426 - ORSgTEMT01701112 154 0.0003 (1/2986) 0 * * Os_TE_193970 Chr6 1288031 1288032 - SZ-48LTR 3632 0.1097 (325/2962) 0 * Os_TE_193969 Os_TE_193969 Chr6 1288027 1288026 + SZ-48LTR 3632 0.1049 (310/2955) 0 * Os_TE_193970 Os_TE_193968 Chr6 1287819 1275580 - RIRE5-LTR_OS 6427 0.5356 (1579/2948) 1 Intact Os_TE_193933 Os_TE_193933 Chr6 1275580 1287819 + RIRE5-LTR_OS 6427 0.4487 (1141/2543) 1 Intact Os_TE_193968 Os_TE_193931 Chr6 1274515 1274516 - RETROSAT4_LTR 13504 0.0197 (58/2939) 0 * * Os_TE_193930 Chr6 1274374 1274375 - RIREX_LTR 8828 0.0355 (104/2933) 0 * * Os_TE_193921 Chr6 1271804 1271805 + OSTE1 801 0.0004 (1/2329) 0 * * Os_TE_193920 Chr6 1271643 1271642 - STOWAWAY51_OS 246 0.0004 (1/2390) 0 * * Os_TE_193917 Chr6 1271508 1271507 - STOWAWAY51_OS 246 0.0013 (3/2269) 0 * * Os_TE_193913 Chr6 1271144 1271145 - SETARIA1 1293 0.0358 (105/2930) 0 * Os_TE_193912 Os_TE_193912 Chr6 1271136 1271135 - SETARIA1 1293 0.0215 (62/2887) 0 * Os_TE_193913 Os_TE_193909 Chr6 1270860 1270859 - OLO24 345 0.0210 (59/2809) 0 * * Os_TE_193826 Chr6 1223922 1223923 + MuDR4_OS 7610 0.0393 (105/2670) 0 * Os_TE_193825 Os_TE_193825 Chr6 1223915 1223914 - MuDR4_OS 7610 0.0354 (95/2686) 0 * Os_TE_193826 Os_TE_193802 Chr6 1219780 1219779 - COPIA2-LTR_OS 6433 0.0005 (1/1935) 0 * * Os_TE_193793 Chr6 1217103 1217104 + OSTE17 734 0.0051 (14/2745) 0 * Os_TE_193792 Os_TE_193792 Chr6 1217095 1217094 - OSTE17 734 0.0047 (13/2745) 0 * Os_TE_193793 Os_TE_193755 Chr6 1212794 1212793 - ORSgTEMT01600902 239 0.1473 (397/2696) 0 * Os_TE_193754 Os_TE_193754 Chr6 1212791 1212792 - ORSgTEMT01601432 239 0.1543 (411/2663) 0 * Os_TE_193755 Os_TE_193753 Chr6 1212239 1212238 + ORSgTEMT00100272 356 0.0053 (15/2821) 0 * Os_TE_193752 Os_TE_193752 Chr6 1212238 1212239 + NDNA1TNA_OS 334 0.0050 (14/2804) 0 * Os_TE_193753 Os_TE_193751 Chr6 1211936 1211937 + NDNA1TNA_OS 334 0.1639 (446/2722) 0 * Os_TE_193750 Os_TE_193750 Chr6 1211935 1211934 - ORSgTEMT00100582 334 0.1831 (500/2731) 0 * Os_TE_193751 Os_TE_193749 Chr6 1211831 1211832 + ORSgTETNOOT01834 251 0.1012 (275/2718) 0 * Os_TE_193748 Os_TE_193748 Chr6 1211828 1211827 - TOURIST-XI 219 0.1081 (292/2701) 0 * Os_TE_193749 Os_TE_193739 Chr6 1207228 1207229 + SPMLIKE 10989 0.0010 (3/2978) 0 * Os_TE_193738 Os_TE_193738 Chr6 1207226 1207225 - SPMLIKE 10989 0.0007 (2/2983) 0 * Os_TE_193739 Os_TE_193714 Chr6 1173419 1173420 - RIREX_LTR 8828 0.0003 (1/2994) 0 * Os_TE_193713 Os_TE_193713 Chr6 1173415 1173414 + RIREX_LTR 8828 0.0003 (1/2995) 0 * Os_TE_193714 Os_TE_193690 Chr6 1166853 1166852 - RETROSAT2LTR 12796 0.1528 (143/936) 0 * * Os_TE_193680 Chr6 1161057 1161058 - RIRE2_LTR 11306 0.0033 (10/2992) 0 * * Os_TE_193678 Chr6 1160942 1160943 - ORSgTETN00200001 10994 0.0007 (2/2972) 0 * * Os_TE_193674 Chr6 1159253 1159252 + RIRE2_LTR 11306 0.0041 (12/2926) 0 * * Os_TE_193658 Chr6 1153440 1153036 - TOS1 295 0.8617 (2548/2957) 1 Intact * Os_TE_193604 Chr6 1147030 1147029 - NDNA1TNA_OS 334 0.0215 (55/2553) 0 * * Os_TE_193548 Chr6 1135129 1135128 + STOWAWAY51_OS 246 0.2291 (400/1746) 0 * * Os_TE_193485 Chr6 1115160 1115159 + RETRO1_LTR 8314 0.0674 (173/2568) 0 * * Os_TE_193484 Chr6 1114831 1114832 + ORSgTEMT00502363 147 0.0014 (4/2880) 0 * * Os_TE_193478 Chr6 1113915 1113624 + STOWAWAY11_OS 292 0.5219 (1527/2926) 1 Intact Os_TE_193476 Os_TE_193476 Chr6 1113623 1113914 - STOWAWAY11_OS 292 0.5124 (1489/2906) 1 Intact Os_TE_193478 Os_TE_193474 Chr6 1113344 1113345 + ORSgTERT00200216 776 0.0004 (1/2851) 0 * * Os_TE_193470 Chr6 1111856 1111855 - COPI2_LTR 4733 0.0013 (4/2963) 0 * * Os_TE_193442 Chr6 1094804 1094803 + ORSgTEMT00501504 140 0.0017 (5/2978) 0 * * Os_TE_193433 Chr6 1091398 1091399 + COPI2_LTR 4733 0.0003 (1/2997) 0 * * Os_TE_193390 Chr6 1076311 1076312 - DS-RICE2N 613 0.0246 (42/1706) 0 * Os_TE_193389 Os_TE_193389 Chr6 1076303 1076302 + DS-RICE2N 613 0.0222 (38/1708) 0 * Os_TE_193390 Os_TE_193366 Chr6 1070666 1070667 + SZ-40LTR 2465 0.0011 (2/1818) 0 * * Os_TE_193351 Chr6 1066893 1066894 - MPING 430 0.0026 (4/1537) 0 * Os_TE_193350 Os_TE_193350 Chr6 1066891 1066890 + MPING 430 0.0033 (5/1523) 0 * Os_TE_193351 Os_TE_193345 Chr6 1066540 1066539 + DS-RICE4N 715 0.0008 (1/1219) -1 * * Os_TE_193343 Chr6 1066283 1066282 + RETRO1_LTR 8314 0.0014 (1/717) -1 * * Os_TE_193334 Chr6 1061625 1061624 + MPING 430 0.0003 (1/2969) 0 * * Os_TE_193321 Chr6 1053290 1053289 + SZ-67LTR 1540 0.0020 (6/2996) 0 * * Os_TE_193299 Chr6 1041694 1041693 + COPIA2-LTR_OS 6433 0.0005 (1/1984) 0 * * Os_TE_193297 Chr6 1040700 1040701 - COPIA2-LTR_OS 6433 0.0005 (1/1966) 0 * Os_TE_193296 Os_TE_193296 Chr6 1040696 1040695 + COPIA2-LTR_OS 6433 0.0003 (1/2979) 0 * Os_TE_193297 Os_TE_193263 Chr6 1029020 1029019 - COPIA2-LTR_OS 6433 0.0057 (11/1938) 0 * * Os_TE_193244 Chr6 1024892 1024893 - SZ-35LTR 3853 0.0005 (1/1838) 0 * Os_TE_193243 Os_TE_193243 Chr6 1024888 1024887 + RETROSAT4_LTR 13504 0.0005 (1/1868) 0 * Os_TE_193244 Os_TE_193233 Chr6 1021908 1022146 + TREP215 239 0.8914 (1789/2007) 1 Intact * Os_TE_193232 Chr6 1021327 1020801 + QINNIU 528 0.6151 (1162/1889) 1 Intact Os_TE_193230 Os_TE_193230 Chr6 1020800 1021327 - HATOS1 3488 0.6149 (1161/1888) 1 Intact Os_TE_193232 Os_TE_193216 Chr6 1012386 1012387 + SC-4_LTR 5218 0.0005 (1/2196) 0 * Os_TE_193215 Os_TE_193215 Chr6 1012382 1012381 - SC-4_LTR 5218 0.0004 (1/2270) 0 * Os_TE_193216 Os_TE_193213 Chr6 1012148 1012147 - COPIA2-LTR_OS 6433 0.0004 (1/2474) 0 * * Os_TE_193210 Chr6 1011579 1011578 - ORSgTEMT00100865 348 0.1954 (489/2502) 0 * Os_TE_193209 Os_TE_193209 Chr6 1011548 1011549 + ORSgTEMT00100291 345 0.2862 (725/2533) 0 * Os_TE_193210 Os_TE_193206 Chr6 1007111 1007110 + STOWAWAY9_OS 235 0.0032 (5/1547) 0 * * Os_TE_193189 Chr6 997808 993876 - RETROSAT4_LTR 13504 0.3490 (789/2261) 1 Solo_LTR * Os_TE_193169 Chr6 988337 988338 - COPIA2-LTR_OS 6433 0.0052 (11/2123) 0 * Os_TE_193168 Os_TE_193168 Chr6 988333 988332 + COPIA2-LTR_OS 6433 0.0047 (10/2120) 0 * Os_TE_193169 Os_TE_193167 Chr6 987771 987532 - ORSgTEMT01400019 216 0.7655 (1622/2119) 1 Intact Os_TE_193164 Os_TE_193164 Chr6 987530 987737 + ORSgTEMT01400032 215 0.7621 (1605/2106) 1 Intact Os_TE_193167 Os_TE_193163 Chr6 987281 987282 + MPING 430 0.0005 (1/2085) 0 * * Os_TE_193138 Chr6 982281 982043 - ORSgTEMT01601208 238 0.8341 (1770/2122) -1 Intact Os_TE_193137 Os_TE_193137 Chr6 982043 982281 - ORSgTEMT01601208 238 0.7606 (1169/1537) -1 Intact Os_TE_193138 Os_TE_193131 Chr6 977845 977844 - NDNA1TNA_OS 334 0.3588 (691/1926) 0 * * Os_TE_193090 Chr6 951648 951649 - SZ-48LTR 3632 0.0038 (8/2133) 0 * Os_TE_193089 Os_TE_193089 Chr6 951644 951643 + SZ-48LTR 3632 0.0037 (8/2160) 0 * Os_TE_193090 Os_TE_193064 Chr6 934528 934527 + ORSgTETNOOT00032 218 0.2152 (419/1947) 0 * * Os_TE_193055 Chr6 931176 931177 - SC-3_LTR 5748 0.0003 (1/2980) 0 * Os_TE_193054 Os_TE_193054 Chr6 931172 931171 + ORSiTERTOOT00296 5553 0.0003 (1/2976) 0 * Os_TE_193055 Os_TE_193051 Chr6 929044 929045 - SC-8_LTR 4951 0.0077 (23/2999) 0 * Os_TE_193050 Os_TE_193050 Chr6 929040 929039 + ORSiTERTOOT00381 4988 0.0077 (23/2992) 0 * Os_TE_193051 Os_TE_193047 Chr6 924230 924229 + ORSgTEMT00500201 140 0.0955 (286/2996) 0 * * Os_TE_193029 Chr6 912239 912240 + RIRE3A_LTR 10580 0.0154 (46/2983) 0 * Os_TE_193028 Os_TE_193028 Chr6 912235 912234 - RIRE3A_LTR 10580 0.0158 (47/2980) 0 * Os_TE_193029 Os_TE_193027 Chr6 912067 912068 + F569 228 0.0137 (41/2990) 0 * Os_TE_193026 Os_TE_193026 Chr6 912065 912064 - F569 228 0.0127 (38/2990) 0 * Os_TE_193027 Os_TE_193025 Chr6 911961 911962 - MuDR4_OS 7610 0.0145 (43/2975) 0 * Os_TE_193024 Os_TE_193024 Chr6 911954 911953 - MuDR4_OS 7610 0.0151 (45/2986) 0 * Os_TE_193025 Os_TE_193023 Chr6 911803 911802 - ORSgTEMT02400246 177 0.1184 (354/2989) 0 * Os_TE_193022 Os_TE_193022 Chr6 911799 911800 + ORSgTEMT02400041 225 0.1185 (354/2988) 0 * Os_TE_193023 Os_TE_193021 Chr6 911652 911651 - RIREX_LTR 8828 0.0003 (1/2991) 0 * Os_TE_193020 Os_TE_193020 Chr6 911646 911647 + RIREX_LTR 8828 0.0003 (1/2992) 0 * Os_TE_193021 Os_TE_193019 Chr6 911242 911241 + ORSgTEMT00900961 237 0.0552 (163/2954) 0 * Os_TE_193018 Os_TE_193018 Chr6 911238 911239 + ORSgTEMT00901844 250 0.0544 (160/2940) 0 * Os_TE_193019 Os_TE_192956 Chr6 897540 897201 + ORSgTEMT00101674 340 0.2446 (723/2956) 1 Intact Os_TE_192954 Os_TE_192954 Chr6 897204 897537 + NDNA1TNA_OS 334 0.2466 (734/2976) 1 Intact Os_TE_192956 Os_TE_192923 Chr6 882940 882941 + COPI2_LTR 4733 0.0003 (1/2927) 0 * Os_TE_192922 Os_TE_192922 Chr6 882936 882935 - COPI2_LTR 4733 0.0003 (1/2908) 0 * Os_TE_192923 Os_TE_192894 Chr6 870084 870083 + F1275 157 0.0007 (2/2993) 0 * * Os_TE_192881 Chr6 863513 863512 + MuDR-5_OS 17471 0.0514 (150/2917) 0 * * Os_TE_192878 Chr6 863023 863024 - ORSgTETNOOT01243 137 0.0014 (1/711) 0 * * Os_TE_192877 Chr6 862887 862888 + ORSgTETNOOT00670 249 0.7742 (2297/2967) 0 * Os_TE_192876 Os_TE_192876 Chr6 862886 862885 - STOWAWAY17_OS 259 0.7580 (2105/2777) 0 * Os_TE_192877 Os_TE_192840 Chr6 846356 846357 - RIRE2_LTR 11306 0.0027 (8/2980) 0 * Os_TE_192839 Os_TE_192839 Chr6 846352 846351 - ORSgTERT00201216 11284 0.0027 (8/2978) 0 * Os_TE_192840 Os_TE_192826 Chr6 832262 832263 - ORSgTETNOOT02245 144 0.0023 (7/2996) 0 * * Os_TE_192825 Chr6 831843 831842 + ORSgTEMT01700637 157 0.0024 (7/2956) 0 * * Os_TE_192823 Chr6 831620 831621 - COWARD 200 0.0024 (7/2881) 0 * * Os_TE_192822 Chr6 831430 831431 - RETRO1_LTR 8314 0.0057 (16/2784) 0 * Os_TE_192821 Os_TE_192821 Chr6 831426 831425 + RETRO2A_LTR 12895 0.0057 (16/2787) 0 * Os_TE_192822 Os_TE_192809 Chr6 825372 825373 - SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_192808 Os_TE_192808 Chr6 825368 825367 + SC-8_LTR 4951 0.0003 (1/2995) 0 * Os_TE_192809 Os_TE_192806 Chr6 823075 823076 - SC-3_LTR 5748 0.0493 (147/2983) 0 * Os_TE_192805 Os_TE_192805 Chr6 823071 823070 + ORSiTERTOOT00296 5553 0.0483 (144/2984) 0 * Os_TE_192806 Os_TE_192803 Chr6 822890 822889 + CRATA-2 851 0.0040 (12/2991) 0 * * Os_TE_192802 Chr6 821734 821735 + RIREX_LTR 8828 0.0007 (2/2996) 0 * Os_TE_192801 Os_TE_192801 Chr6 821730 821729 - RIREX_LTR 8828 0.0007 (2/2998) 0 * Os_TE_192802 Os_TE_192786 Chr6 806964 806965 + MPING 430 0.0003 (1/2993) 0 * Os_TE_192785 Os_TE_192785 Chr6 806962 806961 - MPING 430 0.0003 (1/2998) 0 * Os_TE_192786 Os_TE_192782 Chr6 806612 806613 + ORSgTEMT00101341 314 0.5480 (1637/2987) 0 * Os_TE_192781 Os_TE_192781 Chr6 806611 806610 + NDNA1TNA_OS 334 0.5518 (1651/2992) 0 * Os_TE_192782 Os_TE_192774 Chr6 804897 804898 - MPING 430 0.0003 (1/2990) 0 * Os_TE_192773 Os_TE_192773 Chr6 804895 804894 + MPING 430 0.0003 (1/2985) 0 * Os_TE_192774 Os_TE_192758 Chr6 793129 793128 - TREP219 104 0.0652 (194/2977) 0 * * Os_TE_192757 Chr6 792867 792866 + EXPLORER 210 0.0636 (189/2971) 0 * * Os_TE_192741 Chr6 785027 785026 + ORSgTEMT00502094 140 0.0058 (17/2906) 0 * Os_TE_192740 Os_TE_192740 Chr6 785025 785026 + ORSgTEMT00500035 140 0.0058 (17/2928) 0 * Os_TE_192741 Os_TE_192727 Chr6 780605 780606 - TRUNCATOR2_LTR 2904 0.0259 (77/2974) 0 * Os_TE_192726 Os_TE_192726 Chr6 780601 780600 + ORSiTERTOOT00028 8600 0.0256 (76/2967) 0 * Os_TE_192727 Os_TE_192725 Chr6 779960 779961 - MuDR3_OS 8604 0.0610 (181/2969) 0 * Os_TE_192724 Os_TE_192724 Chr6 779951 779950 - MuDR3_OS 8604 0.0591 (175/2961) 0 * Os_TE_192725 Os_TE_192656 Chr6 744119 744120 + SZ-67LTR 1540 0.0020 (6/2991) 0 * Os_TE_192655 Os_TE_192655 Chr6 744115 744114 - SZ-67LTR 1540 0.0020 (6/2992) 0 * Os_TE_192656 Os_TE_192647 Chr6 739376 739377 - SC-3_LTR 5748 0.0054 (16/2989) 0 * * Os_TE_192641 Chr6 734576 734577 - SC-3_LTR 5748 0.0007 (2/2947) 0 * Os_TE_192640 Os_TE_192640 Chr6 734572 734571 + ORSiTERTOOT00296 5553 0.0007 (2/2953) 0 * Os_TE_192641 Os_TE_192627 Chr6 728333 728332 + ORSgTEMT01600283 240 0.0037 (11/2954) 0 * Os_TE_192626 Os_TE_192626 Chr6 728330 728331 - ORSgTEMT01600639 228 0.0037 (11/2965) 0 * Os_TE_192627 Os_TE_192620 Chr6 724754 724755 - ORSgTEMT02400179 221 0.0013 (3/2302) 0 * Os_TE_192619 Os_TE_192619 Chr6 724753 724752 - TYPEM 227 0.0013 (3/2303) 0 * Os_TE_192620 Os_TE_192615 Chr6 719595 719596 + ORSgTETNOOT00908 242 0.0044 (13/2972) 0 * Os_TE_192614 Os_TE_192614 Chr6 719590 719589 + ORSgTETNOOT01219 231 0.0040 (12/2967) 0 * Os_TE_192615 Os_TE_192606 Chr6 714492 714493 + ORSgTEMT00901202 248 0.0059 (17/2876) 0 * Os_TE_192605 Os_TE_192605 Chr6 714491 714490 - ORSgTEMT00900965 216 0.0060 (17/2857) 0 * Os_TE_192606 Os_TE_192603 Chr6 713949 712559 + OSTE33 1012 0.2174 (601/2765) -1 Intact Os_TE_192601 Os_TE_192601 Chr6 712553 713949 + OSTE33 1012 0.2662 (782/2938) 1 Intact Os_TE_192603 Os_TE_192589 Chr6 709395 709394 - ORSgTEMT00600085 364 0.0003 (1/2964) 0 * * Os_TE_192588 Chr6 708776 708777 + SZ-55_LTR 10318 0.0003 (1/2967) 0 * * Os_TE_192575 Chr6 703237 703238 - AMYLTP 383 0.2660 (796/2992) 0 * Os_TE_192574 Os_TE_192574 Chr6 703229 703228 + AMYLTP 383 0.2594 (773/2980) 0 * Os_TE_192575 Os_TE_192573 Chr6 703023 703024 + NDNA1TNA_OS 334 0.0057 (17/2992) 0 * Os_TE_192572 Os_TE_192572 Chr6 703022 703021 + CASTAWAY 364 0.0057 (17/2992) 0 * Os_TE_192573 Os_TE_192570 Chr6 702454 702455 + ORSiCMCM00100014 10855 0.0028 (8/2860) 0 * * Os_TE_192562 Chr6 698656 698657 + ORSgTETNOOT01219 231 0.0034 (10/2982) 0 * Os_TE_192561 Os_TE_192561 Chr6 698648 698647 + ORSgTETNOOT00908 242 0.0034 (10/2982) 0 * Os_TE_192562 Os_TE_192558 Chr6 697657 697656 - ORSgTEMT00900099 250 0.0056 (16/2853) 0 * * Os_TE_192533 Chr6 689235 689236 + ORSgTEMT01400012 212 0.0061 (17/2796) 0 * * Os_TE_192509 Chr6 683344 683345 - SC-3_LTR 5748 0.0003 (1/2994) 0 * Os_TE_192508 Os_TE_192508 Chr6 683340 683339 + ORSiTERTOOT00296 5553 0.0003 (1/2997) 0 * Os_TE_192509 Os_TE_192506 Chr6 682552 682553 + ORSiTERTOOT00296 5553 0.0003 (1/2995) 0 * Os_TE_192505 Os_TE_192505 Chr6 682548 682547 - SC-3_LTR 5748 0.0003 (1/2994) 0 * Os_TE_192506 Os_TE_192434 Chr6 653481 653482 - SC-8_LTR 4951 0.0003 (1/2989) 0 * Os_TE_192433 Os_TE_192433 Chr6 653477 653476 + SC-8_LTR 4951 0.0003 (1/2990) 0 * Os_TE_192434 Os_TE_192429 Chr6 646761 646760 + ORSgTEMT01600527 241 0.0057 (17/2989) 0 * * Os_TE_192428 Chr6 646755 646754 + ORSgTETNOOT00908 242 0.0023 (7/2985) 0 * * Os_TE_192427 Chr6 646734 646735 + ORSgTEMT01602119 229 0.0057 (17/2996) 0 * * Os_TE_192421 Chr6 641335 641334 - HELITRON7_OS 10153 0.0141 (42/2969) 0 * * Os_TE_192418 Chr6 640974 640975 + ORSgTEMT00100291 345 0.0003 (1/2975) 0 * * Os_TE_192417 Chr6 640962 640963 - SZ-67LTR 1540 0.0040 (12/2987) 0 * Os_TE_192416 Os_TE_192416 Chr6 640958 640957 + SZ-67LTR 1540 0.0027 (8/2991) 0 * Os_TE_192417 Os_TE_192381 Chr6 614674 614675 + SZ-67LTR 1540 0.0047 (10/2111) 0 * Os_TE_192380 Os_TE_192380 Chr6 614670 614669 - SZ-67LTR 1540 0.0047 (10/2145) -1 * Os_TE_192381 Os_TE_192356 Chr6 601726 601725 - RIRE2_LTR 11306 0.0034 (10/2956) 0 * * Os_TE_192335 Chr6 597141 597142 - RETROSAT3_LTR 11537 0.0027 (8/2996) 0 * * Os_TE_192275 Chr6 567655 567654 - LINE-7_OS 7090 0.0027 (8/2936) 0 * * Os_TE_192273 Chr6 565857 565856 - COPI2_LTR 4733 0.0023 (7/2992) 0 * * Os_TE_192271 Chr6 564924 564925 + ORSgTEMT01701101 133 0.0033 (10/2990) 0 * * Os_TE_192262 Chr6 550854 550853 + ORSgTEMT00300044 390 0.0037 (11/2970) 0 * * Os_TE_192244 Chr6 538471 538470 - STOWAWAY51_OS 246 0.0007 (2/2965) 0 * Os_TE_192243 Os_TE_192243 Chr6 538465 538466 + STOWAWAY51_OS 246 0.0007 (2/2972) 0 * Os_TE_192244 Os_TE_192242 Chr6 538099 538100 - RIRE5-LTR_OS 6427 0.0040 (12/2998) 0 * * Os_TE_192240 Chr6 537802 537803 - GYPSY-A_LTR 8951 0.0027 (8/2997) 0 * * Os_TE_192211 Chr6 527660 524607 + RETROSAT4_LTR 13504 0.3022 (855/2829) 1 Intact Os_TE_192207 Os_TE_192207 Chr6 524607 527660 - SZ-35LTR 3853 0.3236 (953/2945) 1 Intact Os_TE_192211 Os_TE_192203 Chr6 522853 522854 - MPING 430 0.0003 (1/2986) 0 * Os_TE_192202 Os_TE_192202 Chr6 522851 522850 + MPING 430 0.0003 (1/2988) 0 * Os_TE_192203 Os_TE_192196 Chr6 520947 520946 + ORSiTERTOOT00074 4935 0.0010 (3/2935) 0 * Os_TE_192195 Os_TE_192195 Chr6 520943 520944 - ORSiTERTOOT00138 2740 0.0010 (3/2925) 0 * Os_TE_192196 Os_TE_192173 Chr6 510152 510151 - COPI2_LTR 4733 0.0003 (1/2990) 0 * * Os_TE_192134 Chr6 486511 486512 - COPI2_LTR 4733 0.0003 (1/2984) 0 * * Os_TE_192092 Chr6 464909 464910 - OSR3_LTR 5201 0.0003 (1/2956) 0 * Os_TE_192091 Os_TE_192091 Chr6 464905 464904 + OSR3_LTR 5201 0.0003 (1/2956) 0 * Os_TE_192092 Os_TE_192090 Chr6 464675 464676 - SC-8_LTR 4951 0.0003 (1/2961) 0 * Os_TE_192089 Os_TE_192089 Chr6 464671 464670 + SC-8_LTR 4951 0.0003 (1/2956) 0 * Os_TE_192090 Os_TE_192078 Chr6 457166 457165 + ORSgTEMT01602709 237 0.0265 (78/2947) 0 * * Os_TE_192074 Chr6 455765 455766 - ORSgTEMT00900034 246 0.0037 (11/2988) 0 * * Os_TE_192045 Chr6 442470 442471 + COPI1_LTR 4721 0.0037 (11/2973) 0 * Os_TE_192044 Os_TE_192044 Chr6 442466 442465 - SZ-25LTR 330 0.0033 (10/2990) 0 * Os_TE_192045 Os_TE_192034 Chr6 435413 435412 + TRUNCATOR 2918 0.0150 (43/2858) 0 * Os_TE_192033 Os_TE_192033 Chr6 435412 435413 - TRUNCATOR 2918 0.0205 (59/2873) 0 * Os_TE_192034 Os_TE_192001 Chr6 401588 401589 + COPI2_LTR 4733 0.0003 (1/2992) 0 * Os_TE_192000 Os_TE_192000 Chr6 401584 401583 - COPI2_LTR 4733 0.0003 (1/2987) 0 * Os_TE_192001 Os_TE_191976 Chr6 386495 386496 - RIRE2_LTR 11306 0.1108 (325/2932) 0 * * Os_TE_191960 Chr6 371340 371341 - SC-8_LTR 4951 0.0003 (1/2995) 0 * Os_TE_191959 Os_TE_191959 Chr6 371336 371335 + SC-8_LTR 4951 0.0003 (1/2994) 0 * Os_TE_191960 Os_TE_191946 Chr6 364061 364060 + ORSgTEMT00901844 250 0.0007 (2/2975) 0 * Os_TE_191945 Os_TE_191945 Chr6 364052 364053 - ORSgTEMT00900099 250 0.0007 (2/2905) 0 * Os_TE_191946 Os_TE_191944 Chr6 364015 364014 + TNR2A 152 0.0007 (2/2910) 0 * * Os_TE_191936 Chr6 361792 361916 - ORSgTEMT01701982 136 0.7573 (2181/2880) 1 Intact * Os_TE_191928 Chr6 358142 358143 + ORSgTEMT01601591 242 0.0003 (1/2868) 0 * * Os_TE_191921 Chr6 357589 357590 + RETROSAT4_LTR 13504 0.0208 (43/2070) 0 * Os_TE_191920 Os_TE_191920 Chr6 357585 357584 - RETROSAT4_LTR 13504 0.0327 (69/2107) 0 * Os_TE_191921 Os_TE_191912 Chr6 355205 355206 - COPIA2-LTR_OS 6433 0.0005 (1/2188) 0 * * Os_TE_191902 Chr6 350873 350874 + MERMITEH 1307 0.2858 (850/2974) 0 * * Os_TE_191900 Chr6 350485 350280 + ORSgTEMT01400032 215 0.7215 (2130/2952) 1 Intact Os_TE_191898 Os_TE_191898 Chr6 350247 350481 + STOWAWAY9_OS 235 0.7180 (2070/2883) 1 Intact Os_TE_191900 Os_TE_191890 Chr6 344596 344597 + STOWAWAY51_OS 246 0.0003 (1/2984) 0 * * Os_TE_191889 Chr6 344261 344262 + EnSpm-10_OS 11265 0.0003 (1/2994) 0 * * Os_TE_191888 Chr6 343583 343584 + COPIA2-LTR_OS 6433 0.0067 (20/2991) 0 * Os_TE_191887 Os_TE_191887 Chr6 343579 343578 - COPIA2-LTR_OS 6433 0.0074 (22/2987) 0 * Os_TE_191888 Os_TE_191885 Chr6 342642 342641 + SZ-40LTR 2465 0.0007 (2/2991) 0 * * Os_TE_191884 Chr6 342426 313188 - RETROSAT4_LTR 13504 0.3203 (958/2991) 1 Intact * Os_TE_191861 Chr6 313030 313029 - ORSgTEMT02000049 200 0.8287 (2066/2493) -1 * * Os_TE_191843 Chr6 305298 305297 + ORSgTEMT00500852 140 0.0007 (2/2982) 0 * * Os_TE_191831 Chr6 303171 303170 - ORSgTEMT00901230 241 0.0438 (131/2990) 0 * * Os_TE_191824 Chr6 302303 302302 + MPING 430 0.0334 (98/2932) 0 * * Os_TE_191822 Chr6 301808 301809 + GYPSO_LTR 9828 0.0017 (1/572) -1 * * Os_TE_191818 Chr6 297308 297309 - RIREX_LTR 8828 0.0007 (2/2971) 0 * Os_TE_191817 Os_TE_191817 Chr6 297304 297303 + RIREX_LTR 8828 0.0007 (2/2980) 0 * Os_TE_191818 Os_TE_191816 Chr6 297158 297157 + STOWAWAY46_OS 154 0.0003 (1/2970) 0 * * Os_TE_191810 Chr6 295351 295352 + COPIA2-LTR_OS 6433 0.0003 (1/2964) 0 * Os_TE_191809 Os_TE_191809 Chr6 295347 295346 - COPIA2-LTR_OS 6433 0.0003 (1/2962) 0 * Os_TE_191810 Os_TE_191797 Chr6 288105 288106 - TOS17LTR 138 0.0003 (1/2996) 0 * Os_TE_191796 Os_TE_191796 Chr6 288101 288100 + TOS17LTR 138 0.0003 (1/2995) 0 * Os_TE_191797 Os_TE_191795 Chr6 287139 287140 + ORSiTERTOOT00296 5553 0.0003 (1/2992) 0 * Os_TE_191794 Os_TE_191794 Chr6 287135 287134 - SC-3_LTR 5748 0.0003 (1/2991) 0 * Os_TE_191795 Os_TE_191788 Chr6 276140 276139 - RETROSAT5_LTR 13878 0.0538 (161/2993) 0 * * Os_TE_191787 Chr6 275051 275052 - SC-3_LTR 5748 0.0003 (1/2997) 0 * Os_TE_191786 Os_TE_191786 Chr6 275047 275046 + ORSiTERTOOT00296 5553 0.0003 (1/2995) 0 * Os_TE_191787 Os_TE_191779 Chr6 266619 266620 - ORSgTEMT00900741 219 0.0003 (1/2947) 0 * * Os_TE_191753 Chr6 249874 249873 + STOWAWAY51_OS 246 0.0007 (2/2939) 0 * * Os_TE_191737 Chr6 240619 240620 + SC-8_LTR 4951 0.0003 (1/2988) 0 * Os_TE_191736 Os_TE_191736 Chr6 240615 240614 - SC-8_LTR 4951 0.0003 (1/2990) 0 * Os_TE_191737 Os_TE_191734 Chr6 239298 239299 - SC-3_LTR 5748 0.0104 (31/2991) 0 * Os_TE_191733 Os_TE_191733 Chr6 239294 239293 + ORSiTERTOOT00296 5553 0.0097 (29/2988) 0 * Os_TE_191734 Os_TE_191731 Chr6 236551 236552 - SC-7_LTR 4431 0.0003 (1/2989) 0 * Os_TE_191730 Os_TE_191730 Chr6 236547 236546 + SC-7_LTR 4431 0.0003 (1/2996) 0 * Os_TE_191731 Os_TE_191713 Chr6 227885 227886 + TELIA 141 0.0003 (1/2978) 0 * * Os_TE_191711 Chr6 227606 227607 - TYPEM 227 0.0003 (1/2927) 0 * Os_TE_191710 Os_TE_191710 Chr6 227605 227604 - ORSgTEMT02400179 221 0.0003 (1/2989) 0 * Os_TE_191711 Os_TE_191684 Chr6 222542 222543 - COPIA2-LTR_OS 6433 0.0003 (1/2948) 0 * * Os_TE_191674 Chr6 221169 221168 + TWIFB1 3737 0.0003 (1/2959) 0 * * Os_TE_191670 Chr6 218271 218270 + STOWAWAY44_OS 240 0.0092 (26/2815) 0 * Os_TE_191669 Os_TE_191669 Chr6 218268 218269 - STOWAWAY44_OS 240 0.0104 (29/2793) 0 * Os_TE_191670 Os_TE_191660 Chr6 211446 211447 + ORSgTETNOOT00908 242 0.0097 (28/2876) 0 * Os_TE_191659 Os_TE_191659 Chr6 211440 211439 - ORSgTETNOOT00823 234 0.0101 (29/2877) 0 * Os_TE_191660 Os_TE_191650 Chr6 209598 209599 + DS-RICE2N 613 0.0007 (2/2977) 0 * Os_TE_191649 Os_TE_191649 Chr6 209591 209590 - DS-RICE2N 613 0.0007 (2/2979) 0 * Os_TE_191650 Os_TE_191645 Chr6 208449 208450 - MPING 430 0.0003 (1/2994) 0 * Os_TE_191644 Os_TE_191644 Chr6 208447 208446 + MPING 430 0.0003 (1/2996) 0 * Os_TE_191645 Os_TE_191632 Chr6 200925 200926 - ORSiTERTOOT00183 3603 0.0003 (1/2980) 0 * * Os_TE_191602 Chr6 185595 185594 + SZ-45LTR 2474 0.0003 (1/2919) 0 * * Os_TE_191565 Chr6 175147 175148 + RETRO2_LTR 12874 0.0007 (2/2987) 0 * * Os_TE_191541 Chr6 165274 165275 + SPMLIKE 10989 0.0003 (1/2993) 0 * Os_TE_191540 Os_TE_191540 Chr6 165272 165271 - ORSgTETN00200001 10994 0.0003 (1/2990) 0 * Os_TE_191541 Os_TE_191524 Chr6 156985 156984 - ORSgTEMT02400179 221 0.0190 (56/2951) 0 * * Os_TE_191473 Chr6 131071 131072 + MPING 430 0.0052 (15/2892) 0 * Os_TE_191472 Os_TE_191472 Chr6 131069 131068 - MPING 430 0.0045 (13/2892) 0 * Os_TE_191473 Os_TE_330787 Chr5 29763867 29763868 + CPSC2_LTR 5202 0.0007 (2/2994) 0 * Os_TE_330786 Os_TE_330786 Chr5 29763863 29763862 - CPSC2_LTR 5202 0.0007 (2/2993) 0 * Os_TE_330787 Os_TE_330780 Chr5 29762223 29762224 - ORSiTETNOOT00134 607 0.0003 (1/2986) 0 * * Os_TE_330752 Chr5 29754520 29754519 - ORSgTEMT02900061 318 0.0017 (5/2993) 0 * Os_TE_330751 Os_TE_330751 Chr5 29754519 29754520 - STOWAWAY12_OS 312 0.0017 (5/2993) 0 * Os_TE_330752 Os_TE_330715 Chr5 29733869 29733870 + ORSiTERTOOT00296 5553 0.0003 (1/2988) 0 * Os_TE_330714 Os_TE_330714 Chr5 29733865 29733864 - SC-3_LTR 5748 0.0003 (1/2987) 0 * Os_TE_330715 Os_TE_330680 Chr5 29724911 29724912 - TRUNCATOR2_LTR 2904 0.0097 (29/2998) 0 * Os_TE_330679 Os_TE_330679 Chr5 29724907 29724906 + ORSiCMCM00100019 2717 0.0090 (27/2997) 0 * Os_TE_330680 Os_TE_330664 Chr5 29721613 29721614 - HARB-1_OS 5166 0.0017 (5/2914) 0 * Os_TE_330663 Os_TE_330663 Chr5 29721611 29721610 + HARB-1_OS 5166 0.0014 (4/2915) 0 * Os_TE_330664 Os_TE_330650 Chr5 29718961 29718962 + COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * Os_TE_330649 Os_TE_330649 Chr5 29718957 29718956 - COPIA2-LTR_OS 6433 0.0003 (1/2979) 0 * Os_TE_330650 Os_TE_330648 Chr5 29717762 29717763 - ORSgTEMT00600085 364 0.0030 (9/2999) 0 * Os_TE_330647 Os_TE_330647 Chr5 29717760 29717759 + CASTAWAY 364 0.0030 (9/2998) 0 * Os_TE_330648 Os_TE_330646 Chr5 29716956 29716957 + ORSgTEMT01601122 212 0.0007 (2/2720) 0 * * Os_TE_330566 Chr5 29679581 29679580 + ORSiTERTOOT00033 4884 0.0004 (1/2842) 0 * * Os_TE_330536 Chr5 29668836 29668835 - TRUNCATOR 2918 0.0023 (7/2995) 0 * Os_TE_330535 Os_TE_330535 Chr5 29668835 29668836 + TRUNCATOR 2918 0.0027 (8/2994) 0 * Os_TE_330536 Os_TE_330513 Chr5 29654294 29654295 - COPI2_LTR 4733 0.0003 (1/2919) 0 * Os_TE_330512 Os_TE_330512 Chr5 29654290 29654289 + COPI2_LTR 4733 0.0003 (1/2918) 0 * Os_TE_330513 Os_TE_330470 Chr5 29642953 29642954 - COPIA2-LTR_OS 6433 0.0003 (1/2964) 0 * * Os_TE_330457 Chr5 29636844 29636845 + COPIA2-LTR_OS 6433 0.0004 (1/2807) 0 * Os_TE_330456 Os_TE_330456 Chr5 29636840 29636839 - COPIA2-LTR_OS 6433 0.0004 (1/2823) 0 * Os_TE_330457 Os_TE_330379 Chr5 29605260 29605261 - RETROSAT4_LTR 13504 0.0184 (55/2996) 0 * Os_TE_330378 Os_TE_330378 Chr5 29605256 29605255 + RETROSAT4_LTR 13504 0.0174 (52/2996) 0 * Os_TE_330379 Os_TE_330364 Chr5 29595597 29595596 + RETROSAT3_LTR 11537 0.0003 (1/2995) 0 * Os_TE_330363 Os_TE_330363 Chr5 29595591 29595592 - RETROSAT3_LTR 11537 0.0003 (1/2993) 0 * Os_TE_330364 Os_TE_330358 Chr5 29593041 29593042 - COPI2_LTR 4733 0.0020 (6/2984) 0 * Os_TE_330357 Os_TE_330357 Chr5 29593037 29593036 + COPI2_LTR 4733 0.0020 (6/2983) 0 * Os_TE_330358 Os_TE_330356 Chr5 29593015 29593016 - COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * Os_TE_330355 Os_TE_330355 Chr5 29593011 29593010 + COPIA2-LTR_OS 6433 0.0003 (1/2984) 0 * Os_TE_330356 Os_TE_330336 Chr5 29589579 29589580 - INDITTO 263 0.0020 (6/2996) 0 * Os_TE_330335 Os_TE_330335 Chr5 29589577 29589576 + INDITTO 263 0.0023 (7/2993) 0 * Os_TE_330336 Os_TE_330334 Chr5 29588510 29588511 + INDITTO 263 0.0003 (1/2921) 0 * Os_TE_330333 Os_TE_330333 Chr5 29588508 29588507 - INDITTO 263 0.0003 (1/2922) 0 * Os_TE_330334 Os_TE_330328 Chr5 29588151 29588152 - RETROSAT4_LTR 13504 0.0014 (4/2918) 0 * Os_TE_330327 Os_TE_330327 Chr5 29588147 29588146 + RETROSAT4_LTR 13504 0.0014 (4/2923) 0 * Os_TE_330328 Os_TE_330318 Chr5 29585232 29585233 - COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_330317 Os_TE_330317 Chr5 29585228 29585227 + COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_330318 Os_TE_330316 Chr5 29583169 29583170 + COPI2_LTR 4733 0.0003 (1/2964) 0 * * Os_TE_330313 Chr5 29582291 29582292 + COPIA2-LTR_OS 6433 0.0007 (2/2993) 0 * Os_TE_330312 Os_TE_330312 Chr5 29582287 29582286 - COPIA2-LTR_OS 6433 0.0007 (2/2992) 0 * Os_TE_330313 Os_TE_330305 Chr5 29579093 29579094 - COPIA2-LTR_OS 6433 0.0049 (5/1029) 0 * Os_TE_330304 Os_TE_330304 Chr5 29579089 29579088 + COPIA2-LTR_OS 6433 0.0048 (5/1032) 0 * Os_TE_330305 Os_TE_330270 Chr5 29551789 29551788 + TWIF 586 0.0003 (1/2955) 0 * * Os_TE_330221 Chr5 29527576 29527575 + ORSiTEMT01100041 453 0.0003 (1/2970) 0 * * Os_TE_330216 Chr5 29522752 29522753 - SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_330215 Os_TE_330215 Chr5 29522748 29522747 + SC-8_LTR 4951 0.0003 (1/2994) 0 * Os_TE_330216 Os_TE_330209 Chr5 29516969 29516970 - DS-RICE2N 613 0.6732 (1994/2962) 0 * Os_TE_330208 Os_TE_330208 Chr5 29516962 29516961 + DS-RICE2N 613 0.6744 (2003/2970) 0 * Os_TE_330209 Os_TE_330198 Chr5 29514448 29514449 - TYPEM 227 0.0003 (1/2976) 0 * Os_TE_330197 Os_TE_330197 Chr5 29514447 29514446 - ORSgTEMT02400179 221 0.0003 (1/2972) 0 * Os_TE_330198 Os_TE_330180 Chr5 29506609 29506847 - ORSgTEMT01601432 239 0.3338 (968/2900) 1 Intact * Os_TE_330157 Chr5 29500629 29500630 + ORSgTETNOOT01219 231 0.6745 (2006/2974) 0 * Os_TE_330156 Os_TE_330156 Chr5 29500621 29500620 + ORSgTETNOOT00908 242 0.6776 (2011/2968) 0 * Os_TE_330157 Os_TE_330149 Chr5 29498663 29498664 + HARB-1_OS 5166 0.0003 (1/2995) 0 * * Os_TE_330142 Chr5 29491756 29491757 + Cassandra_OS-LTR 764 0.0013 (4/2992) 0 * * Os_TE_330141 Chr5 29491713 29491714 - COPI2_LTR 4733 0.0003 (1/2989) 0 * Os_TE_330140 Os_TE_330140 Chr5 29491709 29491708 + COPI2_LTR 4733 0.0003 (1/2990) 0 * Os_TE_330141 Os_TE_330139 Chr5 29491500 29491501 - Cassandra_OS-LTR 764 0.0747 (223/2987) 0 * Os_TE_330138 Os_TE_330138 Chr5 29491496 29491495 - Cassandra_OS-LTR 764 0.0786 (235/2990) 0 * Os_TE_330139 Os_TE_330116 Chr5 29483773 29483774 - CACTA-M 1129 0.0013 (4/2985) 0 * * Os_TE_330100 Chr5 29478993 29478994 - RIRE2_LTR 11306 0.0003 (1/2994) 0 * * Os_TE_330078 Chr5 29474942 29474941 - RETRO2_LTR 12874 0.6760 (1963/2904) 0 * * Os_TE_330057 Chr5 29465791 29465792 - AMYLTP 383 0.0004 (1/2373) 0 * * Os_TE_330056 Chr5 29465753 29465752 + ORSgTEMT00600120 364 0.6400 (1714/2678) 0 * * Os_TE_330054 Chr5 29465632 29465633 - CASTAWAY 364 0.6783 (2001/2950) 0 * * Os_TE_330040 Chr5 29459687 29459967 + ORSgTETNOOT02316 263 0.7742 (1001/1293) 1 Intact * Os_TE_330017 Chr5 29450456 29450457 + RIREX_LTR 8828 0.0204 (61/2994) 0 * Os_TE_330016 Os_TE_330016 Chr5 29450452 29450451 - RIREX_LTR 8828 0.0220 (61/2770) 0 * Os_TE_330017 Os_TE_329955 Chr5 29431279 29427645 + DS-RICE2N 613 0.8766 (987/1126) 1 Intact Os_TE_329952 Os_TE_329952 Chr5 29427645 29431278 - DS-RICE2N 613 0.8784 (997/1135) 1 Intact Os_TE_329955 Os_TE_329927 Chr5 29411561 29411562 + SC-1_LTR 6888 0.0184 (55/2983) 0 * * Os_TE_329925 Chr5 29411505 29410313 + CACTA-B 1103 0.3200 (953/2978) 1 Intact Os_TE_329924 Os_TE_329924 Chr5 29410310 29411503 + ORSgTETN00200005 1121 0.3160 (942/2981) 1 Intact Os_TE_329925 Os_TE_329885 Chr5 29402099 29402100 + ORSiTERTOOT00028 8600 0.0003 (1/2956) 0 * Os_TE_329884 Os_TE_329884 Chr5 29402095 29402094 - TRUNCATOR2_LTR 2904 0.0003 (1/2984) 0 * Os_TE_329885 Os_TE_329883 Chr5 29402046 29390953 + SPMLIKE 10989 0.1874 (558/2978) 1 Intact Os_TE_329880 Os_TE_329880 Chr5 29390953 29402046 - ORSgTETN00200001 10994 0.1740 (511/2937) 1 Intact Os_TE_329883 Os_TE_329864 Chr5 29386391 29386392 + COPI2_LTR 4733 0.0003 (1/2982) 0 * * Os_TE_329848 Chr5 29378426 29378590 - ORSgTEMT00400004 152 0.4775 (1424/2982) 1 Intact * Os_TE_329794 Chr5 29365869 29365870 + OLO24 345 0.0003 (1/2989) 0 * * Os_TE_329786 Chr5 29355215 29348799 + COPIA2-LTR_OS 6433 0.2398 (718/2994) 1 Intact Os_TE_329779 Os_TE_329779 Chr5 29348799 29355215 - COPIA2-LTR_OS 6433 0.2408 (722/2998) 1 Intact Os_TE_329786 Os_TE_329777 Chr5 29348469 29348468 + COPI2_LTR 4733 0.0003 (1/2999) 0 * * Os_TE_329772 Chr5 29343860 29342596 - RPO_OS 1983 0.1054 (315/2988) 1 Intact * Os_TE_329755 Chr5 29331198 29331199 + MERMITE18E 1528 0.0017 (5/2990) 0 * Os_TE_329754 Os_TE_329754 Chr5 29331194 29331193 - MERMITE18E 1528 0.0010 (3/2991) 0 * Os_TE_329755 Os_TE_329732 Chr5 29320252 29320253 - SC-8_LTR 4951 0.0100 (30/2990) 0 * Os_TE_329731 Os_TE_329731 Chr5 29320248 29320247 + ORSiTERTOOT00381 4988 0.0100 (30/2989) 0 * Os_TE_329732 Os_TE_329729 Chr5 29319219 29319218 - ORSgTEMT01601208 238 0.0017 (5/2986) 0 * Os_TE_329728 Os_TE_329728 Chr5 29319216 29319217 - ORSgTEMT01600639 228 0.0010 (3/2980) 0 * Os_TE_329729 Os_TE_329713 Chr5 29313250 29313249 + ORSiTERTOOT00028 8600 0.0004 (1/2839) 0 * * Os_TE_329707 Chr5 29309062 29309063 - COPIA2-LTR_OS 6433 0.0007 (2/2999) 0 * Os_TE_329706 Os_TE_329706 Chr5 29309058 29309057 + COPIA2-LTR_OS 6433 0.0007 (2/2999) 0 * Os_TE_329707 Os_TE_329700 Chr5 29306472 29306471 + DITAILA 257 0.0003 (1/2896) 0 * * Os_TE_329683 Chr5 29299354 29299355 + RETROSAT2LTRA 3112 0.6176 (1830/2963) 0 * Os_TE_329682 Os_TE_329682 Chr5 29299350 29299349 - RETROSAT2LTRA 3112 0.6256 (1868/2986) 0 * Os_TE_329683 Os_TE_329670 Chr5 29289649 29289648 - TRUNCATOR2_LTR 2904 0.0010 (3/2997) 0 * * Os_TE_329665 Chr5 29285818 29285817 - COPI2_LTR 4733 0.0003 (1/2997) 0 * * Os_TE_329663 Chr5 29281509 29275076 + COPIA2-LTR_OS 6433 0.3186 (953/2991) 1 Intact Os_TE_329661 Os_TE_329661 Chr5 29275076 29281509 - COPIA2-LTR_OS 6433 0.3176 (949/2988) 1 Intact Os_TE_329663 Os_TE_329652 Chr5 29271382 29271383 - SC-8_LTR 4951 0.0003 (1/2994) 0 * Os_TE_329651 Os_TE_329651 Chr5 29271378 29271377 + SC-8_LTR 4951 0.0003 (1/2994) 0 * Os_TE_329652 Os_TE_329627 Chr5 29265228 29265229 - SZ-25LTR 330 0.0013 (4/2993) 0 * Os_TE_329626 Os_TE_329626 Chr5 29265224 29265223 + COPI1_LTR 4721 0.0013 (4/2988) 0 * Os_TE_329627 Os_TE_329622 Chr5 29262300 29262301 - STOWAWAY44_OS 240 0.0004 (1/2847) 0 * * Os_TE_329621 Chr5 29262113 29262114 - COPIA2-LTR_OS 6433 0.0003 (1/2968) 0 * * Os_TE_329591 Chr5 29243480 29243481 - COPI2_LTR 4733 0.0013 (4/2997) 0 * Os_TE_329590 Os_TE_329590 Chr5 29243476 29243475 + COPI2_LTR 4733 0.0013 (4/2996) 0 * Os_TE_329591 Os_TE_329549 Chr5 29218613 29218614 + ORSiTERTOOT00296 5553 0.0003 (1/2981) 0 * Os_TE_329548 Os_TE_329548 Chr5 29218609 29218608 - SC-3_LTR 5748 0.0003 (1/2973) 0 * Os_TE_329549 Os_TE_329503 Chr5 29194880 29194881 - COPI2_LTR 4733 0.0314 (94/2993) 0 * * Os_TE_329496 Chr5 29192225 29192226 - COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * * Os_TE_329481 Chr5 29185296 29185297 - MPING 430 0.0027 (8/2943) 0 * Os_TE_329480 Os_TE_329480 Chr5 29185294 29185293 + MPING 430 0.0027 (8/2933) 0 * Os_TE_329481 Os_TE_329429 Chr5 29166365 29166366 + RIREX_LTR 8828 0.0003 (1/2961) 0 * * Os_TE_329423 Chr5 29163017 29163016 - COPIA2-LTR_OS 6433 0.0003 (1/2921) 0 * * Os_TE_329373 Chr5 29140775 29140774 - HELITRON2_OS 15167 0.0003 (1/2992) 0 * Os_TE_329372 Os_TE_329372 Chr5 29140774 29140775 + HELITRON2_OS 15167 0.0003 (1/2990) 0 * Os_TE_329373 Os_TE_329361 Chr5 29134307 29134308 - SC-4_LTR 5218 0.0003 (1/2998) 0 * * Os_TE_329360 Chr5 29133581 29133582 - MIDWAY 985 0.6633 (1877/2830) 0 * Os_TE_329359 Os_TE_329359 Chr5 29133579 29133578 - HATOS1 3488 0.6907 (2066/2991) 0 * Os_TE_329360 Os_TE_329332 Chr5 29123257 29123258 - GYPSY-A_LTR 8951 0.0017 (5/2983) 0 * Os_TE_329331 Os_TE_329331 Chr5 29123253 29123252 + GYPSY-A_LTR 8951 0.0017 (5/2978) 0 * Os_TE_329332 Os_TE_329321 Chr5 29119448 29119447 + ORSgTEMT00101674 340 0.0795 (238/2993) 0 * Os_TE_329320 Os_TE_329320 Chr5 29119413 29119414 + NDNA1TNA_OS 334 0.0775 (232/2994) 0 * Os_TE_329321 Os_TE_329298 Chr5 29112198 29112197 + RIREX_LTR 8828 0.0044 (13/2960) 0 * * Os_TE_329285 Chr5 29111276 29111275 + RIREX_LTR 8828 0.0003 (1/2949) 0 * * Os_TE_329284 Chr5 29110897 29110898 + RETROSAT4_LTR 13504 0.0604 (178/2947) 0 * Os_TE_329283 Os_TE_329283 Chr5 29110893 29110892 - SZ-35LTR 3853 0.0624 (185/2963) 0 * Os_TE_329284 Os_TE_329273 Chr5 29109392 29109393 + SZ-55_LTR 10318 0.0003 (1/2920) 0 * * Os_TE_329272 Chr5 29108638 29108484 + ORSgTEMT01701997 154 0.4656 (1007/2163) 1 Intact * Os_TE_329268 Chr5 29107096 29107095 - RETROSAT2LTR 12796 0.1584 (473/2986) 0 * * Os_TE_329263 Chr5 29105147 29105146 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * * Os_TE_329256 Chr5 29102318 29102317 + ORSgTETNOOT00908 242 0.0007 (2/2901) 0 * * Os_TE_329207 Chr5 29077540 29077541 + HARB-1_OS 5166 0.0007 (2/2981) 0 * Os_TE_329206 Os_TE_329206 Chr5 29077538 29077537 - HARB-1_OS 5166 0.0007 (2/2980) 0 * Os_TE_329207 Os_TE_329198 Chr5 29074995 29074994 - STOWAWAY44_OS 240 0.0020 (6/2996) 0 * Os_TE_329197 Os_TE_329197 Chr5 29074959 29074960 + STOWAWAY44_OS 240 0.0023 (7/2991) 0 * Os_TE_329198 Os_TE_329196 Chr5 29074695 29074694 - STOWAWAY51_OS 246 0.0013 (4/2998) 0 * Os_TE_329195 Os_TE_329195 Chr5 29074689 29074690 + STOWAWAY51_OS 246 0.0013 (4/2998) 0 * Os_TE_329196 Os_TE_329194 Chr5 29074249 29074250 + MPING 430 0.0003 (1/2983) 0 * Os_TE_329193 Os_TE_329193 Chr5 29074247 29074246 - MPING 430 0.0003 (1/2986) 0 * Os_TE_329194 Os_TE_329182 Chr5 29071111 29071112 - F569 228 0.0021 (6/2894) 0 * Os_TE_329181 Os_TE_329181 Chr5 29071109 29071108 + F569 228 0.0033 (7/2120) 0 * Os_TE_329182 Os_TE_329146 Chr5 29053424 29053425 + ORSgTEMT01601591 242 0.0003 (1/2984) 0 * * Os_TE_329136 Chr5 29047466 29047465 + NDNA1TNA_OS 334 0.3627 (1087/2997) 0 * * Os_TE_329103 Chr5 29030858 29030859 + ORSiTERTOOT00296 5553 0.0023 (7/2997) 0 * * Os_TE_329099 Chr5 29026405 29026404 - COPIA2-LTR_OS 6433 0.0007 (2/2984) 0 * * Os_TE_329098 Chr5 29025732 29025731 + OSTE15 1168 0.0020 (6/2966) 0 * * Os_TE_329093 Chr5 29019691 29019692 - RETROSAT2LTR 12796 0.6833 (2022/2959) 0 * * Os_TE_329050 Chr5 29011737 29011738 + COPIA2-LTR_OS 6433 0.0007 (2/2993) 0 * Os_TE_329049 Os_TE_329049 Chr5 29011733 29011732 - COPIA2-LTR_OS 6433 0.0007 (2/2994) 0 * Os_TE_329050 Os_TE_329048 Chr5 29010954 29006982 - RETROSAT4_LTR 13504 0.3356 (1002/2986) 1 Solo_LTR Os_TE_329043 Os_TE_329043 Chr5 29006982 29010954 + RETROSAT4_LTR 13504 0.3304 (980/2966) 1 Solo_LTR Os_TE_329048 Os_TE_329032 Chr5 29003391 29003392 + COPIA2-LTR_OS 6433 0.0007 (2/2980) 0 * Os_TE_329031 Os_TE_329031 Chr5 29003387 29003386 - COPIA2-LTR_OS 6433 0.0007 (2/2974) 0 * Os_TE_329032 Os_TE_329026 Chr5 29001012 29001011 + RIREX_LTR 8828 0.0003 (1/2972) 0 * * Os_TE_329025 Chr5 29000049 29000050 - ORSgTETNOOT00118 134 0.0020 (6/2994) 0 * Os_TE_329024 Os_TE_329024 Chr5 29000047 29000046 + ORSgTETNOOT01930 140 0.0023 (7/2993) 0 * Os_TE_329025 Os_TE_329023 Chr5 28999856 28999857 - TELIA 141 0.0003 (1/2967) 0 * Os_TE_329022 Os_TE_329022 Chr5 28999848 28999847 + TELIA 141 0.0003 (1/2968) 0 * Os_TE_329023 Os_TE_329010 Chr5 28997779 28997778 + ORSgTEMT01701224 156 0.0020 (6/2937) 0 * Os_TE_329009 Os_TE_329009 Chr5 28997776 28997777 + ORSgTEMT01701547 160 0.0020 (6/2940) 0 * Os_TE_329010 Os_TE_329003 Chr5 28995400 28995399 + ORSgTEMT01601122 212 0.0020 (6/2998) 0 * Os_TE_329002 Os_TE_329002 Chr5 28995397 28995398 + ORSgTEMT01601122 212 0.0020 (6/2994) 0 * Os_TE_329003 Os_TE_328997 Chr5 28985440 28985441 - SZ-55_LTR 10318 0.0007 (2/2996) 0 * * Os_TE_328975 Chr5 28968674 28968256 - ORSgTEMT00300160 419 0.3378 (1008/2984) 1 Intact Os_TE_328974 Os_TE_328974 Chr5 28968249 28968666 + ORSgTEMT00300069 394 0.3407 (1020/2994) 1 Intact Os_TE_328975 Os_TE_328958 Chr5 28962360 28962361 + ORSiTERTOOT00296 5553 0.0003 (1/2991) 0 * * Os_TE_328955 Chr5 28959748 28959749 + COPIA2-LTR_OS 6433 0.0003 (1/2917) 0 * * Os_TE_328953 Chr5 28959505 28959506 + COPIA2-LTR_OS 6433 0.0003 (1/2984) 0 * Os_TE_328952 Os_TE_328952 Chr5 28959501 28959500 - COPIA2-LTR_OS 6433 0.0003 (1/2983) 0 * Os_TE_328953 Os_TE_328948 Chr5 28957899 28957898 - ORSgTEMT02400236 224 0.0006 (1/1548) 0 * * Os_TE_328935 Chr5 28950296 28950297 - SEVERIN-2 1952 0.0923 (271/2937) 0 * * Os_TE_328933 Chr5 28950251 28950252 - ORSgTEMT00600524 364 0.4739 (1419/2994) 0 * Os_TE_328932 Os_TE_328932 Chr5 28950250 28950249 + ORSgTEMT00600272 361 0.4757 (1421/2987) 0 * Os_TE_328933 Os_TE_328931 Chr5 28949782 28949256 + QINNIU 528 0.3411 (1021/2993) 1 Intact Os_TE_328930 Os_TE_328930 Chr5 28949255 28949782 - HATOS1 3488 0.3371 (1004/2978) 1 Intact Os_TE_328931 Os_TE_328914 Chr5 28943332 28943331 + SC-8_LTR 4951 0.0003 (1/2970) 0 * * Os_TE_328907 Chr5 28939057 28939058 + ORSgTETNOOT00908 242 0.0020 (6/2998) 0 * * Os_TE_328851 Chr5 28915177 28915178 + ORSiTERTOOT00296 5553 0.0003 (1/2987) 0 * Os_TE_328850 Os_TE_328850 Chr5 28915173 28915172 - SC-3_LTR 5748 0.0003 (1/2990) 0 * Os_TE_328851 Os_TE_328845 Chr5 28912237 28912236 - ORSiTETNOOT00134 607 0.0003 (1/2925) 0 * * Os_TE_328799 Chr5 28895498 28895497 - OSTE19 162 0.0003 (1/2991) 0 * * Os_TE_328794 Chr5 28891379 28891380 - SC-8_LTR 4951 0.0037 (11/2991) 0 * * Os_TE_328785 Chr5 28883634 28883635 - AMYLTP 383 0.0020 (6/2997) 0 * Os_TE_328784 Os_TE_328784 Chr5 28883626 28883625 + AMYLTP 383 0.0020 (6/2999) 0 * Os_TE_328785 Os_TE_328778 Chr5 28880168 28880169 - COPI2_LTR 4733 0.0003 (1/2997) 0 * * Os_TE_328769 Chr5 28877934 28877933 - STOWAWAY51_OS 246 0.0017 (5/2967) 0 * Os_TE_328768 Os_TE_328768 Chr5 28877931 28877932 - STOWAWAY51_OS 246 0.0017 (5/2968) 0 * Os_TE_328769 Os_TE_328763 Chr5 28871581 28871582 + MERMITEA 1710 0.0017 (5/2991) 0 * * Os_TE_328748 Chr5 28861871 28861872 - COPIA2-LTR_OS 6433 0.0043 (13/2990) 0 * * Os_TE_328745 Chr5 28860677 28860676 + RIREX_LTR 8828 0.0013 (4/2988) 0 * * Os_TE_328732 Chr5 28852995 28852994 - SZ-55_LTR 10318 0.0017 (5/2992) 0 * * Os_TE_328730 Chr5 28850698 28850699 - CASTAWAY 364 0.0017 (5/2997) 0 * Os_TE_328729 Os_TE_328729 Chr5 28850695 28850694 - ORSgTEMT00600304 361 0.0017 (5/2997) 0 * Os_TE_328730 Os_TE_328724 Chr5 28848608 28848607 - STOWAWAY51_OS 246 0.0007 (2/2973) 0 * Os_TE_328723 Os_TE_328723 Chr5 28848602 28848603 + STOWAWAY51_OS 246 0.0007 (2/2980) 0 * Os_TE_328724 Os_TE_328718 Chr5 28845148 28845147 + RIREX_LTR 8828 0.0006 (1/1654) 0 * * Os_TE_328695 Chr5 28832054 28832055 - COPI2_LTR 4733 0.0003 (1/2982) 0 * Os_TE_328694 Os_TE_328694 Chr5 28832050 28832049 + COPI2_LTR 4733 0.0003 (1/2983) 0 * Os_TE_328695 Os_TE_328692 Chr5 28829518 28829517 + ORSgTEMT01601591 242 0.0003 (1/2993) 0 * Os_TE_328691 Os_TE_328691 Chr5 28829515 28829516 + ORSgTEMT01601591 242 0.0003 (1/2994) 0 * Os_TE_328692 Os_TE_328680 Chr5 28824516 28824517 + HARB-1_OS 5166 0.0007 (2/2994) 0 * Os_TE_328679 Os_TE_328679 Chr5 28824514 28824513 - HARB-1_OS 5166 0.0007 (2/2994) 0 * Os_TE_328680 Os_TE_328661 Chr5 28815295 28815294 + ORSgTEMT01601591 242 0.0017 (5/2997) 0 * Os_TE_328660 Os_TE_328660 Chr5 28815289 28815290 + STOWAWAY51_OS 246 0.0017 (5/2993) 0 * Os_TE_328661 Os_TE_328657 Chr5 28813606 28813607 + INDITTO 263 0.1211 (362/2989) 0 * Os_TE_328656 Os_TE_328656 Chr5 28813604 28813603 - INDITTO 263 0.1293 (387/2992) 0 * Os_TE_328657 Os_TE_328654 Chr5 28813200 28813201 + MPING 430 0.0003 (1/2970) 0 * Os_TE_328653 Os_TE_328653 Chr5 28813198 28813197 - MPING 430 0.0003 (1/2975) 0 * Os_TE_328654 Os_TE_328650 Chr5 28812417 28812526 - OSTE18 129 0.2766 (825/2983) 1 Intact * Os_TE_328621 Chr5 28810475 28810474 + ENSPM4_OS 11610 0.0013 (4/2988) 0 * * Os_TE_328601 Chr5 28796737 28796738 - COPIA2-LTR_OS 6433 0.0575 (172/2993) 0 * Os_TE_328600 Os_TE_328600 Chr5 28796733 28796732 + COPIA2-LTR_OS 6433 0.0564 (169/2994) 0 * Os_TE_328601 Os_TE_328596 Chr5 28794543 28794544 + RETROSAT2LTR 12796 0.2196 (640/2915) 0 * Os_TE_328595 Os_TE_328595 Chr5 28794541 28794540 - RETROSAT2LTR 12796 0.2368 (701/2960) 0 * Os_TE_328596 Os_TE_328573 Chr5 28788265 28788266 + TWIF 586 0.0014 (4/2961) 0 * Os_TE_328572 Os_TE_328572 Chr5 28788258 28788257 - ORSiTETNOOT00134 607 0.0014 (4/2961) 0 * Os_TE_328573 Os_TE_328522 Chr5 28762983 28762984 + ORSiTERTOOT00296 5553 0.0003 (1/2992) 0 * Os_TE_328521 Os_TE_328521 Chr5 28762979 28762978 - SC-3_LTR 5748 0.0003 (1/2993) 0 * Os_TE_328522 Os_TE_328519 Chr5 28759195 28759196 - RETRO1_LTR 8314 0.1230 (368/2992) 0 * Os_TE_328518 Os_TE_328518 Chr5 28759191 28759190 + RETRO2A_LTR 12895 0.1222 (365/2988) 0 * Os_TE_328519 Os_TE_328516 Chr5 28757865 28757866 + ORSgTETNOOT01275 140 0.0007 (2/2998) 0 * * Os_TE_328475 Chr5 28742171 28742172 + ORSgTETNOOT01275 140 0.0007 (2/2995) 0 * Os_TE_328474 Os_TE_328474 Chr5 28742169 28742168 - ORSgTETNOOT00544 147 0.0007 (2/2978) 0 * Os_TE_328475 Os_TE_328472 Chr5 28741484 28741137 + NDNA2TNA_OS 346 0.2641 (789/2988) 1 Intact * Os_TE_328470 Chr5 28741133 28741134 + MDR2 6967 0.0023 (2/858) 0 * * Os_TE_328463 Chr5 28738808 28738809 + MERMITEB 1610 0.0007 (2/2997) 0 * Os_TE_328462 Os_TE_328462 Chr5 28738804 28738803 + MERMITEB 1610 0.0007 (2/2996) 0 * Os_TE_328463 Os_TE_328456 Chr5 28735438 28735437 - STOWAWAY51_OS 246 0.0007 (2/2994) 0 * Os_TE_328455 Os_TE_328455 Chr5 28735432 28735433 + STOWAWAY51_OS 246 0.0007 (2/2992) 0 * Os_TE_328456 Os_TE_328453 Chr5 28733956 28733957 + ORSiTERTOOT00381 4988 0.0020 (6/2995) 0 * Os_TE_328452 Os_TE_328452 Chr5 28733952 28733951 - SC-8_LTR 4951 0.0020 (6/2995) 0 * Os_TE_328453 Os_TE_328444 Chr5 28729144 28729145 - RETROSAT2LTR 12796 0.0017 (5/2983) 0 * Os_TE_328443 Os_TE_328443 Chr5 28729142 28729141 + RETROSAT2LTR 12796 0.0017 (5/2980) 0 * Os_TE_328444 Os_TE_328375 Chr5 28709931 28709932 - F569 228 0.0018 (2/1114) 0 * Os_TE_328374 Os_TE_328374 Chr5 28709929 28709928 + F569 228 0.0007 (2/2987) 0 * Os_TE_328375 Os_TE_328362 Chr5 28705888 28705889 - SZ-30_LTR 6377 0.0017 (5/2997) 0 * Os_TE_328361 Os_TE_328361 Chr5 28705884 28705883 + SZ-30_LTR 6377 0.0017 (5/2998) 0 * Os_TE_328362 Os_TE_328355 Chr5 28698489 28698490 + MERMITEJ 1498 0.0017 (5/2889) 0 * Os_TE_328354 Os_TE_328354 Chr5 28698481 28698480 + MERMITEH 1307 0.0017 (5/2897) 0 * Os_TE_328355 Os_TE_328325 Chr5 28675873 28675874 - SZ-25LTR 330 0.0017 (5/2988) 0 * Os_TE_328324 Os_TE_328324 Chr5 28675869 28675868 + COPI1_LTR 4721 0.0017 (5/2988) 0 * Os_TE_328325 Os_TE_328316 Chr5 28671526 28671527 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_328315 Os_TE_328315 Chr5 28671522 28671521 + COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_328316 Os_TE_328283 Chr5 28652977 28652978 - ORSgTERT00200961 124 0.0003 (1/2944) 0 * * Os_TE_328279 Chr5 28651518 28651519 - OSMUD1 5028 0.6349 (1875/2953) 0 * * Os_TE_328276 Chr5 28651039 28651040 + SZ-40LTR 2465 0.0003 (1/2982) 0 * Os_TE_328275 Os_TE_328275 Chr5 28651035 28651034 - SZ-40LTR 2465 0.0003 (1/2990) 0 * Os_TE_328276 Os_TE_328272 Chr5 28650232 28650231 - RIREX_LTR 8828 0.0003 (1/2998) 0 * * Os_TE_328271 Chr5 28650157 28650156 - COPIA2-LTR_OS 6433 0.0010 (3/2994) 0 * * Os_TE_328243 Chr5 28641922 28641921 - MPING 430 0.0003 (1/2986) 0 * Os_TE_328242 Os_TE_328242 Chr5 28641921 28641922 + MPING 430 0.0003 (1/2990) 0 * Os_TE_328243 Os_TE_328222 Chr5 28616603 28616602 + ORSgTEMT00500478 145 0.0017 (5/2990) 0 * * Os_TE_328214 Chr5 28613614 28613613 + ORSgTEMT00600360 369 0.0017 (5/2985) 0 * * Os_TE_328209 Chr5 28611013 28611014 - COPIA2-LTR_OS 6433 0.0167 (50/2995) 0 * Os_TE_328208 Os_TE_328208 Chr5 28611009 28611008 + COPIA2-LTR_OS 6433 0.0160 (48/2996) 0 * Os_TE_328209 Os_TE_328184 Chr5 28602710 28602711 + ORSiRGRR00000001 280 0.0007 (2/2852) 0 * * Os_TE_328183 Chr5 28602515 28602516 - MPING 430 0.0007 (2/2976) 0 * Os_TE_328182 Os_TE_328182 Chr5 28602513 28602512 + MPING 430 0.0007 (2/2973) 0 * Os_TE_328183 Os_TE_328167 Chr5 28595143 28595142 + ORSgTETNOOT00908 242 0.0812 (243/2992) 0 * * Os_TE_328157 Chr5 28592791 28592790 - ORSiTERTOOT00367 5639 0.0003 (1/2893) 0 * * Os_TE_328141 Chr5 28584490 28584491 + SPMLIKE 10989 0.0007 (2/2995) 0 * Os_TE_328140 Os_TE_328140 Chr5 28584488 28584487 - ORSgTETN00200001 10994 0.0007 (2/2994) 0 * Os_TE_328141 Os_TE_328113 Chr5 28571101 28570276 - ORSgTETN00200001 10994 0.2376 (689/2900) 1 Intact * Os_TE_328086 Chr5 28564214 28564215 - ORSiTERTOOT00332 5395 0.0003 (1/2965) 0 * * Os_TE_327997 Chr5 28528168 28528169 - ORSgTEMT00901300 218 0.0036 (7/1945) 0 * * Os_TE_327993 Chr5 28527816 28527817 + ORSgTETNOOT02406 265 0.0125 (36/2874) 0 * Os_TE_327992 Os_TE_327992 Chr5 28527814 28527813 + INDITTO 263 0.0116 (34/2942) 0 * Os_TE_327993 Os_TE_327985 Chr5 28526894 28526895 + DS-RICE2N 613 0.0010 (3/2992) 0 * Os_TE_327984 Os_TE_327984 Chr5 28526887 28526886 - DS-RICE2N 613 0.0010 (3/2993) 0 * Os_TE_327985 Os_TE_327983 Chr5 28525454 28525453 + RIREX_LTR 8828 0.0007 (2/2955) 0 * * Os_TE_327982 Chr5 28525398 28525399 - COPIA2-LTR_OS 6433 0.0024 (7/2947) 0 * * Os_TE_327962 Chr5 28516600 28516741 + ORSgTEMT00500476 150 0.5422 (1620/2988) 1 Intact * Os_TE_327911 Chr5 28496376 28496377 + ORSgTEMT00900917 208 0.0014 (4/2777) 0 * * Os_TE_327883 Chr5 28483068 28483069 + MERMITE18B 1306 0.0014 (4/2867) 0 * * Os_TE_327877 Chr5 28478505 28478504 - ORSgTETNOOT00361 249 0.0003 (1/2989) 0 * * Os_TE_327868 Chr5 28476867 28476868 - RETRO1_LTR 8314 0.3199 (931/2910) 0 * Os_TE_327867 Os_TE_327867 Chr5 28476863 28476862 + RETRO2A_LTR 12895 0.3120 (905/2901) 0 * Os_TE_327868 Os_TE_327855 Chr5 28471791 28471792 + RIREX_LTR 8828 0.0003 (1/2984) 0 * Os_TE_327854 Os_TE_327854 Chr5 28471787 28471786 - RIREX_LTR 8828 0.0003 (1/2982) 0 * Os_TE_327855 Os_TE_327792 Chr5 28442955 28442954 - COPIA2-LTR_OS 6433 0.0003 (1/2976) 0 * * Os_TE_327776 Chr5 28440149 28424260 + RETRO2_LTR 12874 0.1379 (409/2965) 1 Intact * Os_TE_327758 Chr5 28423447 28417035 - COPIA2-LTR_OS 6433 0.1384 (415/2999) 1 Intact * Os_TE_327739 Chr5 28411295 28404809 - COPIA2-LTR_OS 6433 0.0237 (71/2994) 1 Intact Os_TE_327738 Os_TE_327738 Chr5 28404809 28411295 + COPIA2-LTR_OS 6433 0.0234 (70/2993) 1 Intact Os_TE_327739 Os_TE_327736 Chr5 28404700 28404701 - COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_327735 Os_TE_327735 Chr5 28404696 28404695 + COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_327736 Os_TE_327694 Chr5 28388459 28388460 + WUWU 113 0.0017 (5/2995) 0 * * Os_TE_327692 Chr5 28384805 28384804 - HATOS1 3488 0.0778 (233/2993) 0 * * Os_TE_327689 Chr5 28384208 28384209 - RETROSAT2LTR 12796 0.6293 (1857/2951) 0 * * Os_TE_327668 Chr5 28375875 28375876 - RETRO1_LTR 8314 0.0003 (1/2979) 0 * Os_TE_327667 Os_TE_327667 Chr5 28375871 28375870 + RETRO1_LTR 8314 0.0003 (1/2988) 0 * Os_TE_327668 Os_TE_327652 Chr5 28371471 28371470 + ORSiTERTOOT00296 5553 0.0003 (1/2984) 0 * * Os_TE_327648 Chr5 28369147 28369148 - TOS17LTR 138 0.0027 (8/2994) 0 * Os_TE_327647 Os_TE_327647 Chr5 28369143 28369142 + TOS17LTR 138 0.0027 (8/2990) 0 * Os_TE_327648 Os_TE_327645 Chr5 28367842 28367843 + ORSiTERTOOT00296 5553 0.0003 (1/2988) 0 * Os_TE_327644 Os_TE_327644 Chr5 28367838 28367837 - SC-3_LTR 5748 0.0003 (1/2987) 0 * Os_TE_327645 Os_TE_327640 Chr5 28365508 28365509 + SC-8_LTR 4951 0.0010 (3/2979) 0 * Os_TE_327639 Os_TE_327639 Chr5 28365504 28365503 - SC-8_LTR 4951 0.0010 (3/2976) 0 * Os_TE_327640 Os_TE_327636 Chr5 28364481 28364482 - TNR2A 152 0.3581 (1068/2982) 0 * Os_TE_327635 Os_TE_327635 Chr5 28364467 28364466 + TNR2A 152 0.3592 (1071/2982) 0 * Os_TE_327636 Os_TE_327630 Chr5 28360375 28359760 - DS-RICE2N 613 0.1358 (399/2939) 1 Intact * Os_TE_327623 Chr5 28356481 28356482 - SC-3_LTR 5748 0.0005 (1/2002) 0 * * Os_TE_327602 Chr5 28343843 28343844 - ORSiTERTOOT00394 4969 0.0013 (4/2996) 0 * Os_TE_327601 Os_TE_327601 Chr5 28343840 28343839 + ORSiTERTOOT00394 4969 0.0013 (4/2995) 0 * Os_TE_327602 Os_TE_327592 Chr5 28337278 28337279 - SC-3_LTR 5748 0.0064 (19/2991) 0 * Os_TE_327591 Os_TE_327591 Chr5 28337274 28337273 + ORSiTERTOOT00296 5553 0.0063 (19/2995) 0 * Os_TE_327592 Os_TE_327573 Chr5 28331263 28331264 + NDNA1TNA_OS 334 0.8688 (2603/2996) 0 * Os_TE_327572 Os_TE_327572 Chr5 28331262 28331261 + NDNA1TNA_OS 334 0.8688 (2595/2987) 0 * Os_TE_327573 Os_TE_327552 Chr5 28320349 28320350 - SC-3_LTR 5748 0.0003 (1/2988) 0 * Os_TE_327551 Os_TE_327551 Chr5 28320345 28320344 + ORSiTERTOOT00296 5553 0.0003 (1/2985) 0 * Os_TE_327552 Os_TE_327549 Chr5 28317699 28317698 - STOWAWAY51_OS 246 0.0007 (2/2997) 0 * * Os_TE_327547 Chr5 28317555 28317556 - SC-3_LTR 5748 0.0277 (83/2995) 0 * Os_TE_327546 Os_TE_327546 Chr5 28317551 28317550 + ORSiTERTOOT00296 5553 0.0277 (83/2993) 0 * Os_TE_327547 Os_TE_327534 Chr5 28310184 28310183 + GYPSY-A_LTR 8951 0.0570 (170/2981) 0 * * Os_TE_327527 Chr5 28307244 28307243 + COPI2_LTR 4733 0.0010 (3/2926) 0 * * Os_TE_327490 Chr5 28287651 28287652 - SZ-55_LTR 10318 0.0007 (2/2987) 0 * Os_TE_327489 Os_TE_327489 Chr5 28287647 28287646 + SZ-55_LTR 10318 0.0007 (2/2988) 0 * Os_TE_327490 Os_TE_327462 Chr5 28281432 28281433 - RIRE3_LTR 12054 0.0003 (1/2977) 0 * * Os_TE_327461 Chr5 28281266 28281267 - MPING 430 0.0003 (1/2949) 0 * * Os_TE_327450 Chr5 28273938 28273939 + TELIA 141 0.0007 (2/2993) 0 * * Os_TE_327447 Chr5 28272228 28272227 + ORSgTEMT01601122 212 0.8803 (1926/2188) 0 * * Os_TE_327442 Chr5 28264893 28264894 + TWIF 586 0.0003 (1/2967) 0 * Os_TE_327441 Os_TE_327441 Chr5 28264886 28264885 - ORSiTETNOOT00141 607 0.0003 (1/2968) 0 * Os_TE_327442 Os_TE_327430 Chr5 28260737 28260736 + SC-8_LTR 4951 0.0023 (7/2986) 0 * * Os_TE_327425 Chr5 28254321 28254322 - OSR3_LTR 5201 0.0003 (1/2988) 0 * Os_TE_327424 Os_TE_327424 Chr5 28254315 28254314 + OSR3_LTR 5201 0.0003 (1/2993) 0 * Os_TE_327425 Os_TE_327398 Chr5 28228844 28228845 - INDITTO 263 0.0623 (50/802) 0 * Os_TE_327397 Os_TE_327397 Chr5 28228842 28228841 - ORSgTETNOOT00053 263 0.7729 (2311/2990) 0 * Os_TE_327398 Os_TE_327395 Chr5 28228639 28228640 - COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * Os_TE_327394 Os_TE_327394 Chr5 28228635 28228634 + COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_327395 Os_TE_327390 Chr5 28222246 28222247 + ORSiTERTOOT00381 4988 0.0003 (1/2995) 0 * Os_TE_327389 Os_TE_327389 Chr5 28222242 28222241 - SC-8_LTR 4951 0.0003 (1/2993) 0 * Os_TE_327390 Os_TE_327352 Chr5 28208739 28208738 - INDITTO 263 0.7142 (1867/2614) 0 * * Os_TE_327341 Chr5 28200494 28200495 + ORSgTETNOOT01834 251 0.0003 (1/2995) 0 * Os_TE_327340 Os_TE_327340 Chr5 28200492 28200491 + ORSgTETNOOT01834 251 0.0003 (1/2997) 0 * Os_TE_327341 Os_TE_327325 Chr5 28196519 28196520 - COPIA2-LTR_OS 6433 0.0004 (1/2567) 0 * * Os_TE_327319 Chr5 28195411 28195410 + ORSgTETNOOT00908 242 0.0003 (1/2935) 0 * * Os_TE_327298 Chr5 28180562 28180563 - ORSiTERTOOT00402 2660 0.0003 (1/2999) 0 * * Os_TE_327250 Chr5 28161217 28161218 - COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * * Os_TE_327248 Chr5 28161078 28161079 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * * Os_TE_327246 Chr5 28160441 28160442 + MPING 430 0.0118 (35/2967) 0 * Os_TE_327245 Os_TE_327245 Chr5 28160439 28160438 - MPING 430 0.0111 (33/2975) 0 * Os_TE_327246 Os_TE_327241 Chr5 28158112 28158113 + MDR2 6967 0.0003 (1/2999) 0 * Os_TE_327240 Os_TE_327240 Chr5 28158104 28158103 - MDR2 6967 0.0003 (1/2999) 0 * Os_TE_327241 Os_TE_327232 Chr5 28152361 28152360 - STOWAWAY51_OS 246 0.0238 (71/2983) 0 * Os_TE_327231 Os_TE_327231 Chr5 28152355 28152356 + STOWAWAY51_OS 246 0.0251 (75/2985) 0 * Os_TE_327232 Os_TE_327220 Chr5 28149048 28149049 - COPIA2-LTR_OS 6433 0.0003 (1/2975) 0 * Os_TE_327219 Os_TE_327219 Chr5 28149044 28149043 + COPIA2-LTR_OS 6433 0.0003 (1/2977) 0 * Os_TE_327220 Os_TE_327218 Chr5 28147728 28147727 + ORSgTETNOOT00908 242 0.0198 (59/2978) 0 * * Os_TE_327187 Chr5 28139721 28138721 + RETRO2_LTR 12874 0.1090 (312/2862) 1 Solo_LTR Os_TE_327185 Os_TE_327185 Chr5 28138721 28139721 - RETRO2_LTR 12874 0.1441 (408/2832) 1 Solo_LTR Os_TE_327187 Os_TE_327180 Chr5 28136912 28136911 + ORSgTETNOOT02406 265 0.0070 (21/2990) 0 * * Os_TE_327165 Chr5 28134473 28134127 - NDNA2TNA_OS 346 0.1422 (414/2912) 1 Intact Os_TE_327162 Os_TE_327162 Chr5 28134127 28134473 + NDNA2TNA_OS 346 0.1325 (382/2883) 1 Intact Os_TE_327165 Os_TE_327159 Chr5 28132609 28132610 - ORSiTERTOOT00332 5395 0.0983 (292/2972) 0 * Os_TE_327158 Os_TE_327158 Chr5 28132605 28132604 + ORSiTERTOOT00332 5395 0.0928 (275/2963) 0 * Os_TE_327159 Os_TE_327155 Chr5 28129302 28129301 - ORSiTERTOOT00402 2660 0.0003 (1/2994) 0 * * Os_TE_327143 Chr5 28114911 28114912 - ORSgTEMT00900075 250 0.0034 (10/2971) 0 * * Os_TE_327121 Chr5 28104851 28104852 + MPING 430 0.0007 (2/2994) 0 * * Os_TE_327112 Chr5 28101502 28101503 + ORSiTERTOOT00074 4935 0.0003 (1/2999) 0 * * Os_TE_327109 Chr5 28099875 28099876 + ORSgTETNOOT00908 242 0.0064 (19/2991) 0 * Os_TE_327108 Os_TE_327108 Chr5 28099873 28099872 + ORSgTETNOOT00012 241 0.0064 (19/2986) 0 * Os_TE_327109 Os_TE_327105 Chr5 28098836 28098837 - SPMLIKE 10989 0.0010 (3/2988) 0 * Os_TE_327104 Os_TE_327104 Chr5 28098834 28098833 + CACTA-H 1152 0.0010 (3/2988) 0 * Os_TE_327105 Os_TE_327095 Chr5 28096834 28096833 - STOWAWAY51_OS 246 0.0013 (4/2992) 0 * Os_TE_327094 Os_TE_327094 Chr5 28096828 28096829 + STOWAWAY51_OS 246 0.0013 (4/2988) 0 * Os_TE_327095 Os_TE_327092 Chr5 28095932 28095933 + RIREX_LTR 8828 0.0003 (1/2982) 0 * Os_TE_327091 Os_TE_327091 Chr5 28095928 28095927 - RIREX_LTR 8828 0.0003 (1/2985) 0 * Os_TE_327092 Os_TE_327081 Chr5 28089044 28089045 - SC-8_LTR 4951 0.0003 (1/2989) 0 * Os_TE_327080 Os_TE_327080 Chr5 28089040 28089039 + SC-8_LTR 4951 0.0003 (1/2994) 0 * Os_TE_327081 Os_TE_327070 Chr5 28083634 28083633 - GAIJIN 147 0.0003 (1/2990) 0 * * Os_TE_327038 Chr5 28067242 28066895 - NDNA2TNA_OS 346 0.1486 (443/2982) 1 Intact Os_TE_327036 Os_TE_327036 Chr5 28066895 28067242 + NDNA2TNA_OS 346 0.1500 (449/2994) 1 Intact Os_TE_327038 Os_TE_327031 Chr5 28066412 28066568 + ORSgTEMT00100818 160 0.1526 (456/2989) 1 Intact * Os_TE_327027 Chr5 28065700 28065699 - STOWAWAY51_OS 246 0.0018 (5/2818) 0 * Os_TE_327026 Os_TE_327026 Chr5 28065697 28065698 - STOWAWAY51_OS 246 0.0018 (5/2816) 0 * Os_TE_327027 Os_TE_327013 Chr5 28055118 28055119 + OLO24 345 0.1260 (377/2992) 0 * * Os_TE_326941 Chr5 28031610 28031611 + RIREX_LTR 8828 0.0013 (4/2992) 0 * Os_TE_326940 Os_TE_326940 Chr5 28031606 28031605 - RIREX_LTR 8828 0.0010 (3/2991) 0 * Os_TE_326941 Os_TE_326883 Chr5 28021881 28021880 + RETRO1_LTR 8314 0.1342 (397/2959) 0 * * Os_TE_326872 Chr5 28015123 28015124 + MPING 430 0.0034 (10/2979) 0 * * Os_TE_326865 Chr5 28011916 28011915 + ORSiTERTOOT00239 695 0.0011 (3/2765) 0 * * Os_TE_326864 Chr5 28008893 28008894 + SC-8_LTR 4951 0.0010 (3/2997) 0 * Os_TE_326863 Os_TE_326863 Chr5 28008889 28008888 - SC-8_LTR 4951 0.0010 (3/2997) 0 * Os_TE_326864 Os_TE_326848 Chr5 28001974 28001975 + COPIA2-LTR_OS 6433 0.0007 (2/2993) 0 * * Os_TE_326822 Chr5 27994897 27994898 + NDNA1TNA_OS 334 0.0010 (3/2988) 0 * Os_TE_326821 Os_TE_326821 Chr5 27994895 27994894 - NDNA1TNA_OS 334 0.0010 (3/2987) 0 * Os_TE_326822 Os_TE_326815 Chr5 27991489 27991490 - MERMITE18B 1306 0.1235 (369/2987) 0 * Os_TE_326814 Os_TE_326814 Chr5 27991483 27991482 + MERMITEB 1610 0.1237 (370/2990) 0 * Os_TE_326815 Os_TE_326796 Chr5 27977688 27977689 + SC-8_LTR 4951 0.0003 (1/2991) 0 * * Os_TE_326768 Chr5 27965793 27965794 + ORSiTERTOOT00028 8600 0.0003 (1/2993) 0 * Os_TE_326767 Os_TE_326767 Chr5 27965789 27965788 - TRUNCATOR2_LTR 2904 0.0003 (1/2997) 0 * Os_TE_326768 Os_TE_326750 Chr5 27959054 27959053 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * * Os_TE_326684 Chr5 27932280 27932281 - MUDRN3_OS 903 0.0024 (7/2903) -1 * Os_TE_326683 Os_TE_326683 Chr5 27932272 27932271 - MUDRN3_OS 903 0.0024 (7/2901) -1 * Os_TE_326684 Os_TE_326682 Chr5 27931315 27931316 - RETRO2_LTR 12874 0.8117 (2367/2916) 0 * Os_TE_326681 Os_TE_326681 Chr5 27931311 27931310 + ORSgTERTOOT00009 12852 0.8061 (2324/2883) 0 * Os_TE_326682 Os_TE_326676 Chr5 27928241 27927824 + ORSgTEMT00300069 394 0.1892 (563/2975) 1 Intact * Os_TE_326668 Chr5 27920780 27920781 + MPING 430 0.0003 (1/2979) 0 * Os_TE_326667 Os_TE_326667 Chr5 27920778 27920777 - MPING 430 0.0003 (1/2987) 0 * Os_TE_326668 Os_TE_326666 Chr5 27920058 27920059 + COPIA2-LTR_OS 6433 0.0017 (5/2982) 0 * Os_TE_326665 Os_TE_326665 Chr5 27920054 27920053 - COPIA2-LTR_OS 6433 0.0017 (5/2983) 0 * Os_TE_326666 Os_TE_326661 Chr5 27919051 27919052 - NDNA2TNA_OS 346 0.0003 (1/2991) 0 * * Os_TE_326659 Chr5 27918482 27918481 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * * Os_TE_326650 Chr5 27915296 27915297 - RIRE2_LTR 11306 0.2954 (884/2993) 0 * Os_TE_326649 Os_TE_326649 Chr5 27915292 27915291 - ORSgTERT00201216 11284 0.2937 (874/2976) 0 * Os_TE_326650 Os_TE_326648 Chr5 27914419 27914420 - INDITTO 263 0.0027 (8/2986) 0 * Os_TE_326647 Os_TE_326647 Chr5 27914417 27914416 + INDITTO 263 0.0027 (8/2977) 0 * Os_TE_326648 Os_TE_326646 Chr5 27914275 27914276 + HARB-1_OS 5166 0.0003 (1/2990) 0 * Os_TE_326645 Os_TE_326645 Chr5 27914273 27914272 - HARB-1_OS 5166 0.0003 (1/2989) 0 * Os_TE_326646 Os_TE_326624 Chr5 27909959 27909960 - COPIA2-LTR_OS 6433 0.0003 (1/2942) 0 * * Os_TE_326623 Chr5 27909953 27909952 + OLO24 345 0.0003 (1/2939) 0 * * Os_TE_326607 Chr5 27906117 27906118 + RETRO2_LTR 12874 0.3816 (1138/2982) 0 * * Os_TE_326604 Chr5 27905223 27905224 + RIREX_LTR 8828 0.0003 (1/2946) 0 * Os_TE_326603 Os_TE_326603 Chr5 27905219 27905218 - RIREX_LTR 8828 0.0003 (1/2961) 0 * Os_TE_326604 Os_TE_326601 Chr5 27904466 27904465 - NDNA1TNA_OS 334 0.0054 (16/2969) 0 * * Os_TE_326599 Chr5 27903588 27903589 + COPI1_LTR 4721 0.0007 (2/2989) 0 * * Os_TE_326592 Chr5 27902693 27902694 - ORSgTEMT01602283 239 0.0007 (2/2954) 0 * * Os_TE_326584 Chr5 27897960 27897961 - MPING 430 0.0586 (175/2987) 0 * Os_TE_326583 Os_TE_326583 Chr5 27897958 27897957 + MPING 430 0.0580 (173/2985) 0 * Os_TE_326584 Os_TE_326578 Chr5 27892434 27892433 + ORSgTEMT01700715 134 0.0031 (6/1913) -1 * * Os_TE_326576 Chr5 27892341 27892340 + ORSgTEMT01700715 134 0.0006 (1/1585) 0 * * Os_TE_326546 Chr5 27877593 27877594 - MuDR3_OS 8604 0.8463 (2197/2596) 0 * Os_TE_326545 Os_TE_326545 Chr5 27877584 27877583 - MuDR3_OS 8604 0.8657 (2526/2918) 0 * Os_TE_326546 Os_TE_326539 Chr5 27868256 27868257 + TRSA_OS 353 0.0003 (1/2879) 0 * * Os_TE_326533 Chr5 27865849 27865850 - ORSgTEMT00600524 364 0.0355 (106/2989) 0 * Os_TE_326532 Os_TE_326532 Chr5 27865847 27865846 + ORSgTEMT00600272 361 0.0361 (108/2990) 0 * Os_TE_326533 Os_TE_326523 Chr5 27860367 27860368 - ORSgTEMT02400179 221 0.1563 (467/2987) 0 * * Os_TE_326511 Chr5 27858223 27858224 + ORSgTETNOOT00032 218 0.0614 (184/2996) 0 * * Os_TE_326485 Chr5 27851983 27851984 - RETRO2_LTR 12874 0.8196 (2413/2944) 0 * * Os_TE_326477 Chr5 27846042 27846043 + COPI2_LTR 4733 0.0007 (2/2955) 0 * Os_TE_326476 Os_TE_326476 Chr5 27846038 27846037 - COPI2_LTR 4733 0.0007 (2/2958) 0 * Os_TE_326477 Os_TE_326446 Chr5 27837279 27837280 - COPI2_LTR 4733 0.0124 (37/2979) 0 * Os_TE_326445 Os_TE_326445 Chr5 27837275 27837274 + COPI2_LTR 4733 0.0134 (40/2983) 0 * Os_TE_326446 Os_TE_326434 Chr5 27835471 27835472 + ORSgTEMT01400031 216 0.0615 (183/2975) 0 * * Os_TE_326431 Chr5 27833524 27833525 + SZ-55_LTR 10318 0.0003 (1/2990) 0 * * Os_TE_326429 Chr5 27833111 27833112 + ORSgTEMT00700017 386 0.0013 (4/2986) 0 * * Os_TE_326426 Chr5 27831900 27832123 - ORSgTEMT02400246 177 0.1349 (403/2987) 1 Intact * Os_TE_326417 Chr5 27826272 27826273 - ORSgTEMT01602136 239 0.0014 (4/2928) 0 * * Os_TE_326414 Chr5 27825710 27825711 + AMYLTP 383 0.0276 (82/2967) 0 * Os_TE_326413 Os_TE_326413 Chr5 27825702 27825701 - AMYLTP 383 0.0270 (80/2965) 0 * Os_TE_326414 Os_TE_326406 Chr5 27822397 27822396 + ORSgTEMT01701858 154 0.0017 (5/2989) 0 * * Os_TE_326390 Chr5 27810993 27810992 + ORSgTEMT00900471 260 0.0003 (1/2924) 0 * * Os_TE_326374 Chr5 27803785 27803786 - SC-8_LTR 4951 0.0010 (3/2974) 0 * * Os_TE_326325 Chr5 27763723 27763722 + ORSgTETNOOT00221 261 0.0010 (3/2983) 0 * * Os_TE_326301 Chr5 27747867 27747866 - ORSgTEMT05100007 257 0.0003 (1/2986) 0 * * Os_TE_326274 Chr5 27728004 27727859 - TNR2A 152 0.1348 (398/2953) 1 Intact * Os_TE_326270 Chr5 27726450 27726112 + ORSgTEMT00100531 325 0.1323 (396/2994) 1 Intact Os_TE_326269 Os_TE_326269 Chr5 27726115 27726448 + NDNA1TNA_OS 334 0.1316 (394/2993) 1 Intact Os_TE_326270 Os_TE_326267 Chr5 27724055 27724056 + HARB-1_OS 5166 0.0027 (8/2996) 0 * Os_TE_326266 Os_TE_326266 Chr5 27724053 27724052 - HARB-1_OS 5166 0.0027 (8/2995) 0 * Os_TE_326267 Os_TE_326257 Chr5 27715152 27715153 - SC-3_LTR 5748 0.0007 (2/2982) 0 * Os_TE_326256 Os_TE_326256 Chr5 27715148 27715147 + ORSiTERTOOT00296 5553 0.0007 (2/2979) 0 * Os_TE_326257 Os_TE_326239 Chr5 27707340 27707341 - SZ-22_LTR 4403 0.0003 (1/2995) 0 * Os_TE_326238 Os_TE_326238 Chr5 27707336 27707335 + ORSiTERTOOT00226 792 0.0003 (1/2994) 0 * Os_TE_326239 Os_TE_326231 Chr5 27706070 27706069 - AMYLTP 383 0.0015 (4/2751) 0 * * Os_TE_326225 Chr5 27703835 27703836 - INDITTO 263 0.0007 (2/2926) 0 * * Os_TE_326204 Chr5 27691073 27691074 + COPI2_LTR 4733 0.0003 (1/2978) 0 * * Os_TE_326177 Chr5 27678710 27678709 + INDITTO 263 0.6918 (2070/2992) 0 * * Os_TE_326172 Chr5 27673851 27673852 + COPI2_LTR 4733 0.0003 (1/2997) 0 * Os_TE_326171 Os_TE_326171 Chr5 27673847 27673846 - COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_326172 Os_TE_326164 Chr5 27669467 27669466 + ORSgTEMT01601591 242 0.0003 (1/2992) 0 * Os_TE_326163 Os_TE_326163 Chr5 27669461 27669462 + STOWAWAY51_OS 246 0.0003 (1/2987) 0 * Os_TE_326164 Os_TE_326113 Chr5 27655124 27653714 + OSTE33 1012 0.1249 (367/2938) 1 Intact Os_TE_326111 Os_TE_326111 Chr5 27653714 27655124 + OSTE33 1012 0.1304 (387/2967) 1 Intact Os_TE_326113 Os_TE_326099 Chr5 27642820 27642821 + ORSiTERT00400052 469 0.3613 (1081/2992) 0.85 * * Os_TE_326072 Chr5 27624519 27624518 - Cassandra_OS-LTR 764 0.0598 (178/2976) 0 * * Os_TE_326061 Chr5 27617991 27617990 - COPI2_LTR 4733 0.0003 (1/2922) 0 * * Os_TE_326027 Chr5 27606986 27606985 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * * Os_TE_326005 Chr5 27598925 27598924 - TYPEM 227 0.0003 (1/2940) 0 * * Os_TE_325997 Chr5 27592135 27592134 - SC-8_LTR 4951 0.0017 (5/2994) 0 * * Os_TE_325978 Chr5 27584398 27584399 - RETROSAT3_LTR 11537 0.0579 (173/2990) 0 * Os_TE_325977 Os_TE_325977 Chr5 27584394 27584393 - RETROSAT2LTRA 3112 0.0582 (174/2991) 0 * Os_TE_325978 Os_TE_325938 Chr5 27553084 27553085 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_325937 Os_TE_325937 Chr5 27553080 27553079 + COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_325938 Os_TE_325913 Chr5 27549531 27549532 + TWIFB1 3737 0.0037 (11/2999) 0 * * Os_TE_325886 Chr5 27540243 27540244 + ORSgTEMT00600272 361 0.1559 (467/2995) 0 * Os_TE_325885 Os_TE_325885 Chr5 27540241 27540240 - ORSgTEMT00600524 364 0.1566 (469/2994) 0 * Os_TE_325886 Os_TE_325872 Chr5 27524134 27524133 + ORSgTEMT00101674 340 0.0707 (202/2859) 0 * * Os_TE_325871 Chr5 27524133 27524134 - NDNA1TNA_OS 334 0.0007 (2/2916) 0 * * Os_TE_325860 Chr5 27520016 27520017 + OSTE33 1012 0.6785 (1935/2852) 0 * Os_TE_325859 Os_TE_325859 Chr5 27520007 27520006 + OSTE33 1012 0.6903 (2024/2932) 0 * Os_TE_325860 Os_TE_325849 Chr5 27518667 27518666 - SZ-25LTR 330 0.0017 (5/2991) 0 * * Os_TE_325847 Chr5 27518102 27518101 - STOWAWAY51_OS 246 0.0003 (1/2938) 0 * Os_TE_325846 Os_TE_325846 Chr5 27518096 27518097 + STOWAWAY51_OS 246 0.0003 (1/2955) 0 * Os_TE_325847 Os_TE_325845 Chr5 27517994 27517993 - OSTE33 1012 0.0003 (1/2979) 0 * * Os_TE_325820 Chr5 27506510 27506509 + SC-8_LTR 4951 0.0154 (46/2978) 0 * * Os_TE_325819 Chr5 27506245 27506246 - OSR3_LTR 5201 0.0003 (1/2997) 0 * Os_TE_325818 Os_TE_325818 Chr5 27506241 27506240 + OSR3_LTR 5201 0.0003 (1/2995) 0 * Os_TE_325819 Os_TE_325804 Chr5 27497061 27496415 - OSTE24 683 0.1353 (403/2978) 1 Intact * Os_TE_325797 Chr5 27494645 27494644 - STOWAWAY51_OS 246 0.7906 (2277/2880) 0 * * Os_TE_325789 Chr5 27494122 27494123 + ORSgTEMT00500201 140 0.7990 (2385/2985) 0 * * Os_TE_325788 Chr5 27493999 27493998 - RIREX_LTR 8828 0.0003 (1/2978) 0 * * Os_TE_325785 Chr5 27492985 27491736 - CACTA-J 1159 0.2093 (618/2953) 1 Intact Os_TE_325784 Os_TE_325784 Chr5 27491736 27492985 + CACTA-J 1159 0.1877 (539/2871) 1 Intact Os_TE_325785 Os_TE_325757 Chr5 27473926 27473927 - AMYLTP 383 0.0013 (4/2978) 0 * * Os_TE_325746 Chr5 27464830 27464829 + ORSgTETNOOT00032 218 0.0701 (210/2997) 0 * * Os_TE_325741 Chr5 27456944 27456943 - RETROSAT2LTR 12796 0.0693 (184/2654) 0 * * Os_TE_325740 Chr5 27456922 27456923 - GYPSY-A_LTR 8951 0.0024 (5/2071) -1 * Os_TE_325739 Os_TE_325739 Chr5 27456920 27456919 + SZ-40LTR 2465 0.0017 (3/1809) 0 * Os_TE_325740 Os_TE_325732 Chr5 27453135 27453136 + RETROSAT4_LTR 13504 0.0013 (4/2980) 0 * * Os_TE_325722 Chr5 27450350 27450351 - OSTE33 1012 0.0007 (2/2994) 0 * * Os_TE_325710 Chr5 27448499 27448182 + ORSgTEMT00100291 345 0.3047 (880/2888) 1 Intact * Os_TE_325702 Chr5 27447521 27447520 - FOCUS 257 0.0003 (1/2985) 0 * * Os_TE_325689 Chr5 27441146 27441147 + ORSgTEMT00600272 361 0.0017 (5/2987) 0 * Os_TE_325688 Os_TE_325688 Chr5 27441141 27441140 + ORSgTEMT00600376 329 0.0017 (5/2986) 0 * Os_TE_325689 Os_TE_325685 Chr5 27440722 27440723 + ORSgTEMT00600272 361 0.0003 (1/2970) 0 * Os_TE_325684 Os_TE_325684 Chr5 27440717 27440716 + ORSgTEMT00600376 329 0.0003 (1/2993) 0 * Os_TE_325685 Os_TE_325683 Chr5 27440697 27440698 + OSTONOR1_LTR 6440 0.0709 (212/2991) 0 * Os_TE_325682 Os_TE_325682 Chr5 27440693 27440692 - OSTONOR1_LTR 6440 0.0711 (213/2995) 0 * Os_TE_325683 Os_TE_325678 Chr5 27438134 27438135 + MPING 430 0.0018 (5/2833) 0 * Os_TE_325677 Os_TE_325677 Chr5 27438132 27438131 - MPING 430 0.0019 (5/2651) 0 * Os_TE_325678 Os_TE_325674 Chr5 27437699 27437698 + COPI2_LTR 4733 0.0003 (1/2991) 0 * * Os_TE_325673 Chr5 27437264 27437265 + MPING 430 0.0003 (1/2986) 0 * Os_TE_325672 Os_TE_325672 Chr5 27437262 27437261 - MPING 430 0.0003 (1/2989) 0 * Os_TE_325673 Os_TE_325670 Chr5 27436557 27436558 - GYPSY1-LTR_OS 8900 0.0005 (1/2105) -1 * * Os_TE_325664 Chr5 27435427 27435426 - LINE-4_OS 3662 0.0014 (4/2917) 0 * * Os_TE_325658 Chr5 27434274 27434275 + OSTONOR1_LTR 6440 0.0003 (1/2974) 0 * Os_TE_325657 Os_TE_325657 Chr5 27434270 27434269 - OSTONOR1_LTR 6440 0.0003 (1/2979) 0 * Os_TE_325658 Os_TE_325613 Chr5 27425597 27425598 + OSTE33 1012 0.0013 (4/2986) 0 * Os_TE_325612 Os_TE_325612 Chr5 27425588 27425587 + OSTE33 1012 0.0017 (5/2988) 0 * Os_TE_325613 Os_TE_325599 Chr5 27420271 27420272 + MuDR-N6_OS 836 0.0104 (31/2993) 0 * * Os_TE_325588 Chr5 27412386 27412385 + ORSgTEMT01601591 242 0.1147 (341/2973) 0 * Os_TE_325587 Os_TE_325587 Chr5 27412383 27412384 + ORSgTEMT01601591 242 0.1146 (341/2976) 0 * Os_TE_325588 Os_TE_325579 Chr5 27406414 27410777 - SZ-35LTR 3853 0.4114 (1231/2992) 1 Intact * Os_TE_325571 Chr5 27401749 27401748 - COPI2_LTR 4733 0.0003 (1/2972) 0 * * Os_TE_325558 Chr5 27396776 27396775 + TRUNCATOR 2918 0.0004 (1/2267) 0 * * Os_TE_325540 Chr5 27392002 27392234 - ORSgTEMT00900572 216 0.2935 (777/2647) 1 Intact * Os_TE_325537 Chr5 27390767 27390766 - ORSgTEMT00700002 381 0.0003 (1/2997) 0 * * Os_TE_325533 Chr5 27389957 27389958 + DS-RICE2N 613 0.0004 (1/2723) 0 * Os_TE_325532 Os_TE_325532 Chr5 27389950 27389949 - DS-RICE2N 613 0.0004 (1/2707) 0 * Os_TE_325533 Os_TE_325521 Chr5 27388824 27388825 + STOWAWAY51_OS 246 0.0007 (2/2959) 0 * * Os_TE_325517 Chr5 27388527 27388526 + DITAILA 257 0.0017 (5/2968) 0 * * Os_TE_325510 Chr5 27383700 27383699 - OSTONOR1_LTR 6440 0.0003 (1/2997) 0 * * Os_TE_325453 Chr5 27363085 27363086 + NDNA1TNA_OS 334 0.0003 (1/2987) 0 * * Os_TE_325448 Chr5 27362316 27362317 + ORSgTEMT00500659 146 0.0003 (1/2945) 0 * * Os_TE_325433 Chr5 27358502 27358501 + ORSiTEMT00300001 383 0.0023 (7/2982) 0 * * Os_TE_325432 Chr5 27358414 27358415 - COPI2_LTR 4733 0.0003 (1/2984) 0 * Os_TE_325431 Os_TE_325431 Chr5 27358410 27358409 + COPI2_LTR 4733 0.0003 (1/2985) 0 * Os_TE_325432 Os_TE_325425 Chr5 27356360 27356622 + INDITTO 263 0.0300 (79/2631) 1 Intact * Os_TE_325419 Chr5 27353547 27347116 - COPIA2-LTR_OS 6433 0.0257 (77/2994) 1 Intact * Os_TE_325387 Chr5 27330590 27327424 - RIRE3A_LTR 10580 0.0234 (69/2948) 1 Solo_LTR Os_TE_325382 Os_TE_325382 Chr5 27327424 27330590 + ORSiTERTOOT00027 10853 0.0245 (72/2937) 1 Intact Os_TE_325387 Os_TE_325378 Chr5 27321842 27321843 - RETROSAT2LTR 12796 0.0003 (1/2990) 0 * * Os_TE_325355 Chr5 27312493 27312492 - COPI2_LTR 4733 0.0003 (1/2984) 0 * * Os_TE_325321 Chr5 27301328 27301327 - TYPEM 227 0.0004 (1/2764) 0 * * Os_TE_325286 Chr5 27286888 27286889 - ORSiTERT00200154 9386 0.0003 (1/2957) 0 * * Os_TE_325279 Chr5 27284308 27267475 - RETROSAT4_LTR 13504 0.1573 (468/2975) 1 Intact * Os_TE_325250 Chr5 27260329 27260328 - CLOUD 734 0.0017 (5/2993) 0 * * Os_TE_325247 Chr5 27259752 27259753 + MPING 430 0.0003 (1/2996) 0 * Os_TE_325246 Os_TE_325246 Chr5 27259750 27259749 - MPING 430 0.0003 (1/2994) 0 * Os_TE_325247 Os_TE_325244 Chr5 27258912 27258913 - SC-8_LTR 4951 0.0003 (1/2944) 0 * Os_TE_325243 Os_TE_325243 Chr5 27258908 27258907 + SC-8_LTR 4951 0.0003 (1/2955) 0 * Os_TE_325244 Os_TE_325235 Chr5 27255636 27255637 - COPI2_LTR 4733 0.0013 (4/2987) 0 * Os_TE_325234 Os_TE_325234 Chr5 27255632 27255631 + COPI2_LTR 4733 0.0013 (4/2996) 0 * Os_TE_325235 Os_TE_325230 Chr5 27253687 27253686 - COPI2_LTR 4733 0.0003 (1/2996) 0 * * Os_TE_325210 Chr5 27248543 27248544 + RIREX_LTR 8828 0.0003 (1/2990) 0 * Os_TE_325209 Os_TE_325209 Chr5 27248539 27248538 - RIREX_LTR 8828 0.0003 (1/2990) 0 * Os_TE_325210 Os_TE_325208 Chr5 27248501 27248502 + COPI2_LTR 4733 0.0003 (1/2990) 0 * Os_TE_325207 Os_TE_325207 Chr5 27248497 27248496 - COPI2_LTR 4733 0.0003 (1/2991) 0 * Os_TE_325208 Os_TE_325190 Chr5 27233694 27233695 - HARB-1_OS 5166 0.0003 (1/2986) 0 * Os_TE_325189 Os_TE_325189 Chr5 27233692 27233691 + HARB-1_OS 5166 0.0003 (1/2973) 0 * Os_TE_325190 Os_TE_325188 Chr5 27232032 27232033 + ORSiTERTOOT00296 5553 0.0003 (1/2990) 0 * Os_TE_325187 Os_TE_325187 Chr5 27232028 27232027 - SC-3_LTR 5748 0.0003 (1/2993) 0 * Os_TE_325188 Os_TE_325186 Chr5 27231369 27231370 - SC-8_LTR 4951 0.0003 (1/2996) 0 * Os_TE_325185 Os_TE_325185 Chr5 27231365 27231364 + SC-8_LTR 4951 0.0003 (1/2994) 0 * Os_TE_325186 Os_TE_325180 Chr5 27227401 27227402 + MPING 430 0.0042 (11/2592) 0 * Os_TE_325179 Os_TE_325179 Chr5 27227399 27227398 - MPING 430 0.0042 (12/2885) 0 * Os_TE_325180 Os_TE_325178 Chr5 27227323 27227322 + INDITTO 263 0.0035 (10/2875) 0 * Os_TE_325177 Os_TE_325177 Chr5 27227315 27227316 - INDITTO 263 0.0034 (10/2913) 0 * Os_TE_325178 Os_TE_325168 Chr5 27221245 27221244 + F569 228 0.0007 (2/2937) 0 * * Os_TE_325158 Chr5 27211278 27211279 - COPIA2-LTR_OS 6433 0.0030 (9/2997) 0 * Os_TE_325157 Os_TE_325157 Chr5 27211274 27211273 + COPIA2-LTR_OS 6433 0.0030 (9/2994) 0 * Os_TE_325158 Os_TE_325146 Chr5 27199820 27199821 + ORSgTEMT01702111 154 0.8091 (2416/2986) 0 * * Os_TE_325104 Chr5 27182087 27182086 - ORSgTEMT01700029 143 0.8086 (2395/2962) 0 * Os_TE_325103 Os_TE_325103 Chr5 27182084 27182085 + ORSgTEMT01701591 154 0.7951 (2227/2801) 0 * Os_TE_325104 Os_TE_325090 Chr5 27177984 27177983 - ORSgTEMT02400179 221 0.0013 (2/1498) 0 * * Os_TE_325086 Chr5 27176791 27176688 + TREP219 104 0.3611 (603/1670) 1 Intact * Os_TE_325046 Chr5 27150039 27146453 - ORSiTETNOOT00200 3563 0.6987 (429/614) 1 Intact * Os_TE_325021 Chr5 27135559 27135715 - UNIQUE 158 0.5733 (1064/1856) 1 Intact * Os_TE_325008 Chr5 27129237 27129529 - STOWAWAY11_OS 292 0.8871 (1037/1169) 1 Intact * Os_TE_324996 Chr5 27123078 27122947 + ORSgTEMT00500512 153 0.4029 (1044/2591) 1 Intact * Os_TE_324987 Chr5 27119978 27119977 - MDR2 6967 0.5882 (607/1032) 0 * * Os_TE_324975 Chr5 27115150 27107019 - RETROSAT4_LTR 13504 0.1404 (412/2935) 1 Intact Os_TE_324969 Os_TE_324969 Chr5 27107019 27115150 + RETROSAT4_LTR 13504 0.1346 (390/2897) 1 Intact Os_TE_324975 Os_TE_324957 Chr5 27101406 27101265 + ORSgTEMT00501356 145 0.8959 (2667/2977) 1 Intact * Os_TE_324898 Chr5 27078310 27078309 - MUDRN1_OS 764 0.1092 (326/2984) 0 * * Os_TE_324882 Chr5 27068401 27068402 + SC-8_LTR 4951 0.0003 (1/2998) 0 * Os_TE_324881 Os_TE_324881 Chr5 27068397 27068396 - SC-8_LTR 4951 0.0003 (1/2996) 0 * Os_TE_324882 Os_TE_324856 Chr5 27055296 27055295 + NDNA1TNA_OS 334 0.7901 (1483/1877) 0 * * Os_TE_324849 Chr5 27052961 27052962 - RETROSAT2LTR 12796 0.7944 (1526/1921) 0 * * Os_TE_324833 Chr5 27043538 27043539 - INDITTO 263 0.0023 (7/2991) 0 * Os_TE_324832 Os_TE_324832 Chr5 27043536 27043535 + INDITTO 263 0.0023 (7/2986) 0 * Os_TE_324833 Os_TE_324830 Chr5 27042681 27042680 - INDITTO 263 0.0054 (16/2950) 0 * * Os_TE_324808 Chr5 27035754 27035753 + DS-RICE3N 525 0.1814 (478/2635) 0 * * Os_TE_324795 Chr5 27028626 27028627 + TAMI2 254 0.0014 (4/2955) 0 * Os_TE_324794 Os_TE_324794 Chr5 27028618 27028617 - TAMI2 254 0.0020 (6/2952) 0 * Os_TE_324795 Os_TE_324785 Chr5 27028166 27028165 + ORSgTEMT00100272 356 0.0018 (5/2853) 0 * * Os_TE_324687 Chr5 26981905 26981906 - AMYLTP 383 0.0013 (4/2992) 0 * Os_TE_324686 Os_TE_324686 Chr5 26981897 26981896 + AMYLTP 383 0.0013 (4/2990) 0 * Os_TE_324687 Os_TE_324676 Chr5 26977429 26977430 - Cassandra_OS-LTR 764 0.6783 (2024/2984) 0 * Os_TE_324675 Os_TE_324675 Chr5 26977426 26977425 + RETROSAT4_LTR 13504 0.6782 (2013/2968) 0 * Os_TE_324676 Os_TE_324600 Chr5 26951087 26951088 - COPIA2-LTR_OS 6433 0.0007 (2/2958) 0 * Os_TE_324599 Os_TE_324599 Chr5 26951083 26951082 + COPIA2-LTR_OS 6433 0.0007 (2/2956) 0 * Os_TE_324600 Os_TE_324545 Chr5 26932452 26932453 - SC-3_LTR 5748 0.0017 (5/2988) 0 * Os_TE_324544 Os_TE_324544 Chr5 26932448 26932447 + ORSiTERTOOT00296 5553 0.0017 (5/2992) 0 * Os_TE_324545 Os_TE_324541 Chr5 26929371 26929372 + MuDR2_OS 6770 0.0010 (3/2967) 0 * * Os_TE_324536 Chr5 26927427 26927428 - F770 284 0.0013 (4/2999) 0 * * Os_TE_324533 Chr5 26926988 26926989 - COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * * Os_TE_324521 Chr5 26923652 26923653 - SC-3_LTR 5748 0.0003 (1/2997) 0 * Os_TE_324520 Os_TE_324520 Chr5 26923648 26923647 + ORSiTERTOOT00296 5553 0.0003 (1/2998) 0 * Os_TE_324521 Os_TE_324517 Chr5 26921557 26921558 + COPI2_LTR 4733 0.0007 (2/2989) 0 * Os_TE_324516 Os_TE_324516 Chr5 26921553 26921552 - COPI2_LTR 4733 0.0007 (2/2986) 0 * Os_TE_324517 Os_TE_324514 Chr5 26920992 26920993 - STOWAWAY11_OS 292 0.0007 (2/2986) 0 * Os_TE_324513 Os_TE_324513 Chr5 26920991 26920990 + STOWAWAY11_OS 292 0.0017 (5/2989) 0 * Os_TE_324514 Os_TE_324512 Chr5 26920969 26920970 + STOWAWAY11_OS 292 0.0017 (5/2989) 0 * Os_TE_324511 Os_TE_324511 Chr5 26920968 26920967 - STOWAWAY11_OS 292 0.0010 (3/2985) 0 * Os_TE_324512 Os_TE_324491 Chr5 26918177 26918178 + NDNA1TNA_OS 334 0.0014 (4/2954) 0 * Os_TE_324490 Os_TE_324490 Chr5 26918175 26918174 - NDNA1TNA_OS 334 0.0014 (4/2955) 0 * Os_TE_324491 Os_TE_324469 Chr5 26905860 26905859 - ORSgTETNOOT02536 198 0.0014 (4/2950) 0 * * Os_TE_324416 Chr5 26881638 26881637 + COPI2_LTR 4733 0.0003 (1/2972) 0 * * Os_TE_324396 Chr5 26872423 26872424 + RETROSAT4_LTR 13504 0.0312 (62/1987) 0 * * Os_TE_324394 Chr5 26872072 26872073 - COPIA2-LTR_OS 6433 0.0013 (4/2992) 0 * Os_TE_324393 Os_TE_324393 Chr5 26872068 26872067 + COPIA2-LTR_OS 6433 0.0010 (3/2987) 0 * Os_TE_324394 Os_TE_324386 Chr5 26867336 26867337 - MPING 430 0.0007 (2/2953) 0 * Os_TE_324385 Os_TE_324385 Chr5 26867334 26867333 + MPING 430 0.0007 (2/2925) 0 * Os_TE_324386 Os_TE_324370 Chr5 26861625 26861626 + SZ-9LTR 965 0.0003 (1/2999) 0 * Os_TE_324369 Os_TE_324369 Chr5 26861621 26861620 - SZ-9LTR 965 0.0003 (1/2996) 0 * Os_TE_324370 Os_TE_324359 Chr5 26849229 26849230 - STOWAWAY51_OS 246 0.0003 (1/2980) 0 * * Os_TE_324356 Chr5 26848851 26848852 - DS-RICE2N 613 0.0021 (6/2925) 0 * * Os_TE_324331 Chr5 26824585 26824586 - RIREX_LTR 8828 0.0003 (1/2978) 0 * * Os_TE_324319 Chr5 26818763 26818764 - HARB-1_OS 5166 0.0719 (215/2989) 0 * * Os_TE_324305 Chr5 26813823 26813824 + STOWAWAY51_OS 246 0.0003 (1/2954) 0 * * Os_TE_324297 Chr5 26803131 26803132 - SC-3_LTR 5748 0.0331 (99/2989) 0 * Os_TE_324296 Os_TE_324296 Chr5 26803127 26803126 + ORSiTERTOOT00296 5553 0.0335 (100/2987) 0 * Os_TE_324297 Os_TE_324269 Chr5 26788991 26788990 + ORSgTEMT00501299 151 0.0020 (6/2986) 0 * * Os_TE_324240 Chr5 26773871 26773872 - SZ-52_LTR 13107 0.0020 (6/2990) 0 * Os_TE_324239 Os_TE_324239 Chr5 26773867 26773866 + SZ-52_LTR 13107 0.0020 (6/2989) 0 * Os_TE_324240 Os_TE_324236 Chr5 26771190 26771191 - COPI2_LTR 4733 0.0003 (1/2987) 0 * Os_TE_324235 Os_TE_324235 Chr5 26771186 26771185 + COPI2_LTR 4733 0.0003 (1/2987) 0 * Os_TE_324236 Os_TE_324228 Chr5 26767746 26767747 - SZ-48LTR 3632 0.0020 (6/2984) 0 * * Os_TE_324209 Chr5 26753676 26753677 - MPING 430 0.0003 (1/2990) 0 * Os_TE_324208 Os_TE_324208 Chr5 26753674 26753673 + MPING 430 0.0003 (1/2992) 0 * Os_TE_324209 Os_TE_324203 Chr5 26751789 26751790 + OSTE33 1012 0.0014 (4/2842) 0 * Os_TE_324202 Os_TE_324202 Chr5 26751780 26751779 - OSTE33 1012 0.0021 (6/2843) 0 * Os_TE_324203 Os_TE_324199 Chr5 26750227 26750226 - CACTA-I 1124 0.0003 (1/2954) 0 * * Os_TE_324162 Chr5 26737595 26737594 + COPIA2-LTR_OS 6433 0.0010 (3/2983) 0 * * Os_TE_324127 Chr5 26718878 26718879 + COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_324126 Os_TE_324126 Chr5 26718874 26718873 - COPI2_LTR 4733 0.0003 (1/2997) 0 * Os_TE_324127 Os_TE_324125 Chr5 26718606 26718607 - RIREX_LTR 8828 0.0013 (4/2994) 0 * Os_TE_324124 Os_TE_324124 Chr5 26718602 26718601 + RIREX_LTR 8828 0.0013 (4/2999) 0 * Os_TE_324125 Os_TE_324119 Chr5 26714068 26714067 - COPIA2-LTR_OS 6433 0.0013 (4/2994) 0 * * Os_TE_324118 Chr5 26713671 26713672 + ORSiTERTOOT00034 791 0.0009 (1/1064) 0 * Os_TE_324117 Os_TE_324117 Chr5 26713667 26713666 - SZ-22_LTR 4403 0.0003 (1/2995) 0 * Os_TE_324118 Os_TE_324097 Chr5 26703605 26703606 - SC-8_LTR 4951 0.0034 (10/2984) 0 * Os_TE_324096 Os_TE_324096 Chr5 26703601 26703600 + SC-8_LTR 4951 0.0034 (10/2980) 0 * Os_TE_324097 Os_TE_324074 Chr5 26690301 26690302 + MPING 430 0.0003 (1/2992) 0 * Os_TE_324073 Os_TE_324073 Chr5 26690299 26690298 - MPING 430 0.0003 (1/2992) 0 * Os_TE_324074 Os_TE_324071 Chr5 26690235 26690236 - SC-8_LTR 4951 0.0007 (2/2985) 0 * * Os_TE_324069 Chr5 26689991 26689992 - MPING 430 0.0003 (1/2974) 0 * Os_TE_324068 Os_TE_324068 Chr5 26689989 26689988 + MPING 430 0.0003 (1/2987) 0 * Os_TE_324069 Os_TE_324061 Chr5 26683474 26683473 + ORSgTETNOOT00908 242 0.5987 (1793/2995) 0 * * Os_TE_324060 Chr5 26683316 26683315 - STOWAWAY51_OS 246 0.0097 (29/2992) 0 * * Os_TE_324052 Chr5 26680980 26680979 + ORSgTEMT00101388 169 0.0004 (1/2266) 0 * * Os_TE_324046 Chr5 26679534 26679535 - TEMPINDAS 4259 0.0020 (6/2986) 0 * * Os_TE_324029 Chr5 26675276 26675277 + MPING 430 0.0007 (2/2970) 0 * Os_TE_324028 Os_TE_324028 Chr5 26675274 26675273 - MPING 430 0.0003 (1/2962) 0 * Os_TE_324029 Os_TE_324027 Chr5 26675210 26668739 - MuDR3_OS 8604 0.3282 (973/2965) 1 Intact Os_TE_324022 Os_TE_324022 Chr5 26668735 26675206 + MuDR3_OS 8604 0.3144 (918/2920) 1 Intact Os_TE_324027 Os_TE_324017 Chr5 26666759 26666758 + STOWAWAY21_OS 243 0.0020 (6/2978) 0 * Os_TE_324016 Os_TE_324016 Chr5 26666758 26666759 + ORSgTEMT01601122 212 0.0020 (6/2955) 0 * Os_TE_324017 Os_TE_324015 Chr5 26666707 26666706 + ORSgTEMT00100531 325 0.5822 (1742/2992) 0 * Os_TE_324014 Os_TE_324014 Chr5 26666704 26666705 + NDNA1TNA_OS 334 0.5814 (1739/2991) 0 * Os_TE_324015 Os_TE_323987 Chr5 26661708 26661709 + RETRO2_LTR 12874 0.0021 (6/2920) 0 * * Os_TE_323970 Chr5 26653043 26653044 - ORSgTETNOOT01607 258 0.0003 (1/2958) 0 * * Os_TE_323967 Chr5 26651281 26651282 - SC-7_LTR 4431 0.0013 (4/2996) 0 * * Os_TE_323964 Chr5 26649267 26649268 - LINE-7_OS 7090 0.6737 (2015/2991) 0 * * Os_TE_323958 Chr5 26638804 26638805 + STOWAWAY1_OS 149 0.0013 (4/2980) 0 * Os_TE_323957 Os_TE_323957 Chr5 26638803 26638802 - STOWAWAY1_OS 149 0.0013 (4/2979) 0 * Os_TE_323958 Os_TE_323944 Chr5 26621605 26621606 + TWIF 586 0.0574 (168/2925) 0 * Os_TE_323943 Os_TE_323943 Chr5 26621598 26621597 - ORSiTETNOOT00200 3563 0.0688 (203/2952) 0 * Os_TE_323944 Os_TE_323936 Chr5 26615027 26615028 + ORSgTEMT05000092 279 0.0013 (4/2995) 0 * * Os_TE_323931 Chr5 26613632 26613633 + MPING 430 0.0007 (2/2991) 0 * Os_TE_323930 Os_TE_323930 Chr5 26613630 26613629 - MPING 430 0.0007 (2/2991) 0 * Os_TE_323931 Os_TE_323929 Chr5 26613527 26613528 + ORSgTETNOOT01834 251 0.0197 (59/2995) 0 * Os_TE_323928 Os_TE_323928 Chr5 26613525 26613524 + ORSgTETNOOT01834 251 0.0190 (57/2995) 0 * Os_TE_323929 Os_TE_323927 Chr5 26613179 26613180 - INDITTO 263 0.0070 (21/2993) 0 * Os_TE_323926 Os_TE_323926 Chr5 26613177 26613176 - ORSgTETNOOT02000 263 0.0073 (22/2995) 0 * Os_TE_323927 Os_TE_323921 Chr5 26609658 26609657 + ORSgTEMT01701591 154 0.0013 (4/2995) 0 * * Os_TE_323908 Chr5 26603572 26603374 - ORSgTEMT02000041 194 0.3096 (919/2968) 1 Intact * Os_TE_323906 Chr5 26602965 26602966 - COPI2_LTR 4733 0.0003 (1/2997) 0 * Os_TE_323905 Os_TE_323905 Chr5 26602961 26602960 + COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_323906 Os_TE_323904 Chr5 26602742 26602743 - ORSiTERT00100062 5674 0.0007 (2/2993) 0 * Os_TE_323903 Os_TE_323903 Chr5 26602738 26602737 + OSTONOR1_LTR 6440 0.0007 (2/2993) 0 * Os_TE_323904 Os_TE_323885 Chr5 26588773 26588774 + RETRO2_LTR 12874 0.5758 (1649/2864) 0 * Os_TE_323884 Os_TE_323884 Chr5 26588769 26588768 - RETRO2_LTR 12874 0.5909 (1742/2948) 0 * Os_TE_323885 Os_TE_323870 Chr5 26576019 26576018 + OLO24 345 0.0013 (4/2991) 0 * * Os_TE_323859 Chr5 26572477 26572478 + COPI2_LTR 4733 0.0003 (1/2995) 0 * * Os_TE_323834 Chr5 26555310 26555311 + ORSgTETNOOT00908 242 0.6672 (1995/2990) 0 * * Os_TE_323833 Chr5 26553703 26553704 + RIREX_LTR 8828 0.0003 (1/2978) 0 * Os_TE_323832 Os_TE_323832 Chr5 26553699 26553698 - RIREX_LTR 8828 0.0003 (1/2978) 0 * Os_TE_323833 Os_TE_323818 Chr5 26551293 26551294 + SC-8_LTR 4951 0.0007 (2/2768) 0 * Os_TE_323817 Os_TE_323817 Chr5 26551289 26551288 - SC-8_LTR 4951 0.0007 (2/2994) 0 * Os_TE_323818 Os_TE_323727 Chr5 26516017 26516016 - COPIA2-LTR_OS 6433 0.0004 (1/2799) -1 * * Os_TE_323720 Chr5 26513767 26513766 - RETROSAT2LTRA 3112 0.6651 (1988/2989) 0 * * Os_TE_323719 Chr5 26513533 26513534 + COPIO_LTR 11693 0.0007 (2/2977) 0 * * Os_TE_323718 Chr5 26512806 26512805 - ORSgTEMT01400006 213 0.6780 (2026/2988) 0 * * Os_TE_323716 Chr5 26512302 26512303 + MPING 430 0.0003 (1/2997) 0 * Os_TE_323715 Os_TE_323715 Chr5 26512300 26512299 - MPING 430 0.0003 (1/2997) 0 * Os_TE_323716 Os_TE_323702 Chr5 26499863 26499864 - TNR12 528 0.0013 (4/2993) 0 * Os_TE_323701 Os_TE_323701 Chr5 26499855 26499854 + TNR8-1 418 0.0013 (4/2995) 0 * Os_TE_323702 Os_TE_323673 Chr5 26484173 26484174 + ORSgTEMT00901780 248 0.0013 (4/2974) 0 * * Os_TE_323649 Chr5 26480364 26480365 - COPI2_LTR 4733 0.0067 (20/2991) 0 * Os_TE_323648 Os_TE_323648 Chr5 26480360 26480359 + COPI2_LTR 4733 0.0064 (19/2990) 0 * Os_TE_323649 Os_TE_323641 Chr5 26477189 26477190 + SC-8_LTR 4951 0.0073 (22/2995) 0 * Os_TE_323640 Os_TE_323640 Chr5 26477185 26477184 - SC-8_LTR 4951 0.0077 (23/2993) 0 * Os_TE_323641 Os_TE_323634 Chr5 26472056 26472055 + ORSgTETNOOT00317 139 0.0013 (4/2995) 0 * * Os_TE_323633 Chr5 26472021 26472020 + NDNA1TNA_OS 334 0.0297 (88/2963) 0 * Os_TE_323632 Os_TE_323632 Chr5 26472020 26472021 + ORSgTEMT00101674 340 0.0374 (112/2991) 0 * Os_TE_323633 Os_TE_323614 Chr5 26462650 26462649 - ORSgTEMT02400179 221 0.5926 (1767/2982) 0 * * Os_TE_323580 Chr5 26434809 26423554 + RIREX_LTR 8828 0.2987 (889/2976) 0.83 Intact * Os_TE_323566 Chr5 26417584 26416553 - OSTE14 885 0.6455 (905/1402) 1 Intact * Os_TE_323563 Chr5 26416440 26416441 + NDNA1TNA_OS 334 0.7066 (2006/2839) 0 * Os_TE_323562 Os_TE_323562 Chr5 26416438 26416437 - NDNA1TNA_OS 334 0.0679 (63/928) 0 * Os_TE_323563 Os_TE_323556 Chr5 26412986 26411902 + MERMITEA 1710 0.3962 (920/2322) 1 Intact Os_TE_323554 Os_TE_323554 Chr5 26411902 26412941 - MERMITEA 1710 0.2979 (891/2991) 1 Intact Os_TE_323556 Os_TE_323510 Chr5 26384144 26384145 + ORSiTERTOOT00296 5553 0.0003 (1/2996) 0 * Os_TE_323509 Os_TE_323509 Chr5 26384140 26384139 - SC-3_LTR 5748 0.0003 (1/2997) 0 * Os_TE_323510 Os_TE_323498 Chr5 26374086 26373955 - ORSgTEMT00500712 129 0.3743 (902/2410) 1 Intact * Os_TE_323459 Chr5 26362204 26362205 + COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_323458 Os_TE_323458 Chr5 26362200 26362199 - COPI2_LTR 4733 0.0003 (1/2992) 0 * Os_TE_323459 Os_TE_323442 Chr5 26357016 26357015 - STOWAWAY51_OS 246 0.0003 (1/2979) 0 * Os_TE_323441 Os_TE_323441 Chr5 26357008 26357009 + STOWAWAY51_OS 246 0.0003 (1/2984) 0 * Os_TE_323442 Os_TE_323436 Chr5 26356402 26356403 - OLO24 345 0.0003 (1/2980) 0 * Os_TE_323435 Os_TE_323435 Chr5 26356400 26356399 + OLO24 345 0.0003 (1/2987) 0 * Os_TE_323436 Os_TE_323429 Chr5 26355933 26355934 + STOWAWAY51_OS 246 0.0003 (1/2988) 0 * * Os_TE_323418 Chr5 26352743 26352399 + OLO24 345 0.3193 (955/2991) 1 Intact Os_TE_323417 Os_TE_323417 Chr5 26352399 26352743 - OLO24 345 0.3200 (958/2994) 1 Intact Os_TE_323418 Os_TE_323411 Chr5 26343974 26343975 + ORSgTETNOOT01219 231 0.0064 (19/2961) 0 * * Os_TE_323388 Chr5 26338213 26338212 + OSMAR1 5265 0.0071 (21/2975) 0 * Os_TE_323387 Os_TE_323387 Chr5 26338210 26338211 - OSMAR1 5265 0.0071 (21/2971) 0 * Os_TE_323388 Os_TE_323379 Chr5 26334530 26334531 - SC-3_LTR 5748 0.0003 (1/2995) 0 * * Os_TE_323355 Chr5 26330049 26330048 - Cassandra_OS-LTR 764 0.0017 (5/2958) 0 * * Os_TE_323308 Chr5 26311287 26311286 - ORSgTETN00100078 209 0.0003 (1/2996) 0 * * Os_TE_323271 Chr5 26292421 26292422 - ORSgTEMT02400179 221 0.0003 (1/2986) 0 * Os_TE_323270 Os_TE_323270 Chr5 26292420 26292419 - TYPEM 227 0.0003 (1/2975) 0 * Os_TE_323271 Os_TE_323232 Chr5 26269512 26264973 + SZ-48LTR 3632 0.3294 (975/2960) 1 Intact Os_TE_323231 Os_TE_323231 Chr5 26264973 26269512 - SZ-48LTR 3632 0.3243 (957/2951) 1 Intact Os_TE_323232 Os_TE_323228 Chr5 26262565 26262566 + COPIA2-LTR_OS 6433 0.0003 (1/2982) 0 * Os_TE_323227 Os_TE_323227 Chr5 26262561 26262560 - COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * Os_TE_323228 Os_TE_323207 Chr5 26252135 26252136 - ORSiTERTOOT00074 4935 0.0013 (4/2969) 0 * Os_TE_323206 Os_TE_323206 Chr5 26252131 26252130 + ORSiTERTOOT00074 4935 0.0017 (5/2968) 0 * Os_TE_323207 Os_TE_323192 Chr5 26247193 26247194 - DNAUN1_OS 408 0.6628 (1983/2992) 0 * * Os_TE_323188 Chr5 26238678 26238679 + SC-8_LTR 4951 0.0003 (1/2995) 0 * Os_TE_323187 Os_TE_323187 Chr5 26238674 26238673 - SC-8_LTR 4951 0.0003 (1/2995) 0 * Os_TE_323188 Os_TE_323170 Chr5 26231081 26231082 + RETROSAT4_LTR 13504 0.6227 (1624/2608) 0 * Os_TE_323169 Os_TE_323169 Chr5 26231077 26231076 - SZ-35LTR 3853 0.6612 (1889/2857) 0 * Os_TE_323170 Os_TE_323168 Chr5 26231012 26231013 - ORSgTEMT00502442 148 0.6909 (2034/2944) 0 * * Os_TE_323163 Chr5 26228755 26228754 + ORSgTETNOOT00317 139 0.6910 (2017/2919) 0 * Os_TE_323162 Os_TE_323162 Chr5 26228754 26228755 + ORSgTEMT00502094 140 0.6930 (2020/2915) 0 * Os_TE_323163 Os_TE_323159 Chr5 26228027 26228028 + RPO_OS 1983 0.0017 (5/2991) 0 * * Os_TE_323148 Chr5 26225198 26225197 - ORSiTERTOOT00269 10834 0.6772 (2008/2965) 0 * * Os_TE_323142 Chr5 26223803 26223802 + COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * * Os_TE_323140 Chr5 26218153 26223520 + ORSiTERTOOT00345 5324 0.3293 (982/2982) 1 Intact * Os_TE_323099 Chr5 26205387 26205386 + RETROSAT4_LTR 13504 0.6837 (2012/2943) 0 * * Os_TE_323094 Chr5 26204889 26204890 - COPIA2-LTR_OS 6433 0.0012 (3/2401) 0 * Os_TE_323093 Os_TE_323093 Chr5 26204885 26204884 + COPIA2-LTR_OS 6433 0.0010 (3/2870) 0 * Os_TE_323094 Os_TE_323082 Chr5 26203197 26203049 + ORSgTEMT01700513 151 0.3313 (984/2970) 1 Intact Os_TE_323080 Os_TE_323080 Chr5 26203046 26203190 - ORSgTEMT01702177 127 0.3279 (980/2989) 1 Intact Os_TE_323082 Os_TE_323044 Chr5 26183034 26183271 - ORSgTEMT00900099 250 0.3635 (1000/2751) 1 Intact * Os_TE_323042 Chr5 26182938 26182937 - STOWAWAY44_OS 240 0.6394 (1713/2679) 0 * * Os_TE_323035 Chr5 26178153 26178154 + INDITTO 263 0.0072 (21/2912) 0 * Os_TE_323034 Os_TE_323034 Chr5 26178151 26178150 - INDITTO 263 0.0070 (21/2988) 0 * Os_TE_323035 Os_TE_323026 Chr5 26171183 26171184 + COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_323025 Os_TE_323025 Chr5 26171179 26171178 - COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_323026 Os_TE_323008 Chr5 26160492 26160491 + COPI2_LTR 4733 0.0003 (1/2996) 0 * * Os_TE_322996 Chr5 26157482 26157483 + COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_322995 Os_TE_322995 Chr5 26157478 26157477 - COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_322996 Os_TE_322986 Chr5 26152017 26148635 + GYPSY-A_LTR 8951 0.3734 (942/2523) 1 Solo_LTR Os_TE_322984 Os_TE_322984 Chr5 26148635 26152017 - GYPSY-A_LTR 8951 0.4337 (1031/2377) 1 Solo_LTR Os_TE_322986 Os_TE_322970 Chr5 26142682 26142683 + MPING 430 0.0003 (1/2977) 0 * Os_TE_322969 Os_TE_322969 Chr5 26142680 26142679 - MPING 430 0.0003 (1/2979) 0 * Os_TE_322970 Os_TE_322942 Chr5 26134237 26134238 + ORSiTERTOOT00367 5639 0.0003 (1/2967) 0 * Os_TE_322941 Os_TE_322941 Chr5 26134233 26134232 - ORSiTERTOOT00367 5639 0.0003 (1/2961) 0 * Os_TE_322942 Os_TE_322925 Chr5 26127849 26127850 + COPIA2-LTR_OS 6433 0.0003 (1/2967) 0 * Os_TE_322924 Os_TE_322924 Chr5 26127845 26127844 - COPIA2-LTR_OS 6433 0.0003 (1/2956) 0 * Os_TE_322925 Os_TE_322884 Chr5 26099328 26099329 + MPING 430 0.0004 (1/2827) 0 * Os_TE_322883 Os_TE_322883 Chr5 26099326 26099325 - MPING 430 0.0004 (1/2849) 0 * Os_TE_322884 Os_TE_322882 Chr5 26099018 26099019 - ORSgTERT00201053 9237 0.0004 (1/2830) 0 * * Os_TE_322880 Chr5 26095740 26095739 + STOWAWAY51_OS 246 0.0505 (151/2992) 0 * * Os_TE_322879 Chr5 26095734 26095735 - STOWAWAY51_OS 246 0.0521 (156/2996) 0 * Os_TE_322878 Os_TE_322878 Chr5 26095730 26095729 + ORSgTEMT01600726 235 0.0495 (148/2992) 0 * Os_TE_322879 Os_TE_322875 Chr5 26093323 26093324 - GAIJIN 147 0.0007 (2/2997) 0 * * Os_TE_322819 Chr5 26054966 26054967 + SC-8_LTR 4951 0.0003 (1/2990) 0 * Os_TE_322818 Os_TE_322818 Chr5 26054962 26054961 - SC-8_LTR 4951 0.0003 (1/2993) 0 * Os_TE_322819 Os_TE_322816 Chr5 26054311 26054312 + SC-8_LTR 4951 0.0007 (2/2991) 0 * Os_TE_322815 Os_TE_322815 Chr5 26054307 26054306 - SC-8_LTR 4951 0.0007 (2/2987) 0 * Os_TE_322816 Os_TE_322793 Chr5 26027805 26027806 + MPING 430 0.0010 (3/2993) 0 * Os_TE_322792 Os_TE_322792 Chr5 26027803 26027802 - MPING 430 0.0010 (3/2993) 0 * Os_TE_322793 Os_TE_322786 Chr5 26015911 26015912 - SZ-35LTR 3853 0.6618 (1976/2986) 0 * Os_TE_322785 Os_TE_322785 Chr5 26015907 26015906 + RETROSAT4_LTR 13504 0.6535 (1926/2947) 0 * Os_TE_322786 Os_TE_322784 Chr5 26015468 26015469 - RIRE3_LTR 12054 0.0097 (29/2984) 0 * Os_TE_322783 Os_TE_322783 Chr5 26015464 26015463 + RIRE3_LTR 12054 0.0088 (26/2971) 0 * Os_TE_322784 Os_TE_322768 Chr5 25996235 25983762 + SZ-48LTR 3632 0.3364 (998/2967) 1 Intact * Os_TE_322749 Chr5 25970165 25970166 + RIREX_LTR 8828 0.0007 (2/2996) 0 * Os_TE_322748 Os_TE_322748 Chr5 25970161 25970160 - RIREX_LTR 8828 0.0007 (2/2996) 0 * Os_TE_322749 Os_TE_322745 Chr5 25968681 25968682 - SZ-17_LTR 3387 0.0007 (2/2993) 0 * Os_TE_322744 Os_TE_322744 Chr5 25968677 25968676 + SZ-17_LTR 3387 0.0007 (2/2992) 0 * Os_TE_322745 Os_TE_322724 Chr5 25965509 25965510 - COPI2_LTR 4733 0.0699 (177/2534) 0 * Os_TE_322723 Os_TE_322723 Chr5 25965505 25965504 + COPI2_LTR 4733 0.0384 (92/2393) 0 * Os_TE_322724 Os_TE_322720 Chr5 25963993 25963782 + STOWAWAY21_OS 243 0.3411 (1014/2973) 0.86 Intact * Os_TE_322707 Chr5 25960986 25957428 - ORSiTETNOOT00200 3563 0.3403 (1014/2980) 1 Intact Os_TE_322706 Os_TE_322706 Chr5 25957421 25960986 + ORSiTETNOOT00170 3566 0.3403 (1015/2983) 1 Intact Os_TE_322707 Os_TE_322680 Chr5 25945551 25945550 - SC-3_LTR 5748 0.0030 (9/2992) 0 * * Os_TE_322679 Chr5 25945432 25945433 - SC-8_LTR 4951 0.0003 (1/2989) 0 * Os_TE_322678 Os_TE_322678 Chr5 25945428 25945427 + SC-8_LTR 4951 0.0003 (1/2989) 0 * Os_TE_322679 Os_TE_322661 Chr5 25942114 25942362 + ORSgTEMT00901780 248 0.5914 (967/1635) 1 Intact * Os_TE_322659 Chr5 25942103 25942104 - TRUNCATOR 2918 0.4587 (821/1790) 0 * * Os_TE_322607 Chr5 25919496 25919495 + ORSgTERT00200392 431 0.0003 (1/2986) 0 * * Os_TE_322592 Chr5 25914921 25914922 - RIREX_LTR 8828 0.0003 (1/2997) 0 * Os_TE_322591 Os_TE_322591 Chr5 25914917 25914916 + RIREX_LTR 8828 0.0003 (1/2997) 0 * Os_TE_322592 Os_TE_322543 Chr5 25875846 25875847 + COPI2_LTR 4733 0.0003 (1/2971) 0 * Os_TE_322542 Os_TE_322542 Chr5 25875842 25875841 - COPI2_LTR 4733 0.0003 (1/2973) 0 * Os_TE_322543 Os_TE_322540 Chr5 25874542 25874543 - COPI2_LTR 4733 0.0007 (2/2996) 0 * Os_TE_322539 Os_TE_322539 Chr5 25874538 25874537 + COPI2_LTR 4733 0.0007 (2/2994) 0 * Os_TE_322540 Os_TE_322532 Chr5 25872719 25859660 + RIREX_LTR 8828 0.3748 (1028/2743) 1 Intact Os_TE_322527 Os_TE_322527 Chr5 25859660 25871890 - RIRE2_LTR 11306 0.3473 (1035/2980) 1 Intact Os_TE_322532 Os_TE_322525 Chr5 25859471 25859472 + LTR10_OS 202 0.0003 (1/2949) 0 * * Os_TE_322510 Chr5 25852845 25852846 + COPIA2-LTR_OS 6433 0.0003 (1/2964) 0 * Os_TE_322509 Os_TE_322509 Chr5 25852841 25852840 - COPIA2-LTR_OS 6433 0.0003 (1/2966) 0 * Os_TE_322510 Os_TE_322500 Chr5 25850138 25850137 - EnSpm-13_OS 11171 0.0003 (1/2974) 0 * * Os_TE_322499 Chr5 25850112 25850113 - SZ-17_LTR 3387 0.0003 (1/2975) 0 * * Os_TE_322478 Chr5 25842924 25842923 + STOWAWAY44_OS 240 0.0003 (1/2998) 0 * * Os_TE_322477 Chr5 25842740 25842401 + ORSgTEMT00100949 340 0.3444 (1031/2994) 1 Intact Os_TE_322476 Os_TE_322476 Chr5 25842402 25842722 + ORSgTEMT00100531 325 0.3434 (1026/2988) 1 Intact Os_TE_322477 Os_TE_322474 Chr5 25840890 25840891 + COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * Os_TE_322473 Os_TE_322473 Chr5 25840886 25840885 - COPIA2-LTR_OS 6433 0.0003 (1/2984) 0 * Os_TE_322474 Os_TE_322435 Chr5 25820045 25820046 - COPIA2-LTR_OS 6433 0.0003 (1/2980) 0 * Os_TE_322434 Os_TE_322434 Chr5 25820041 25820040 + COPIA2-LTR_OS 6433 0.0003 (1/2981) 0 * Os_TE_322435 Os_TE_322410 Chr5 25808322 25808323 - ORSgTEMT02400179 221 0.0003 (1/2984) 0 * Os_TE_322409 Os_TE_322409 Chr5 25808321 25808320 - TYPEM 227 0.0003 (1/2991) 0 * Os_TE_322410 Os_TE_322368 Chr5 25780060 25780061 - RIREX_LTR 8828 0.0004 (1/2391) 0 * * Os_TE_322339 Chr5 25766739 25766740 - COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_322338 Os_TE_322338 Chr5 25766735 25766734 + COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_322339 Os_TE_322334 Chr5 25763113 25763114 - ORSgTETN00200001 10994 0.0003 (1/2986) 0 * Os_TE_322333 Os_TE_322333 Chr5 25763111 25763110 + SPMLIKE 10989 0.0003 (1/2986) 0 * Os_TE_322334 Os_TE_322322 Chr5 25757407 25757408 + MPING 430 0.0003 (1/2974) 0 * Os_TE_322321 Os_TE_322321 Chr5 25757405 25757404 - MPING 430 0.0003 (1/2981) 0 * Os_TE_322322 Os_TE_322305 Chr5 25753970 25753971 - ORSiTETNOOT00134 607 0.0003 (1/2999) 0 * Os_TE_322304 Os_TE_322304 Chr5 25753963 25753962 + TWIF 586 0.0003 (1/2999) 0 * Os_TE_322305 Os_TE_322302 Chr5 25752610 25752611 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_322301 Os_TE_322301 Chr5 25752606 25752605 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_322302 Os_TE_322256 Chr5 25729131 25729132 - COPIA2-LTR_OS 6433 0.0228 (68/2986) 0 * Os_TE_322255 Os_TE_322255 Chr5 25729127 25729126 + COPIA2-LTR_OS 6433 0.0225 (67/2983) 0 * Os_TE_322256 Os_TE_322224 Chr5 25712024 25712025 + ORSgTEMT01701858 154 0.0017 (5/2993) 0 * * Os_TE_322196 Chr5 25704792 25704791 + RIREX_LTR 8828 0.0003 (1/2988) 0 * * Os_TE_322180 Chr5 25700344 25700345 - ORSgTETNOOT02497 262 0.0097 (29/2989) 0 * Os_TE_322179 Os_TE_322179 Chr5 25700342 25700341 - INDITTO 263 0.0094 (28/2991) 0 * Os_TE_322180 Os_TE_322167 Chr5 25698232 25698233 + ORSgTETNOOT02308 270 0.0007 (2/2848) 0 * Os_TE_322166 Os_TE_322166 Chr5 25698230 25698229 + INDITTO 263 0.0007 (2/2873) 0 * Os_TE_322167 Os_TE_322158 Chr5 25696610 25696611 + COPI2_LTR 4733 0.0003 (1/2976) 0 * Os_TE_322157 Os_TE_322157 Chr5 25696606 25696605 - COPI2_LTR 4733 0.0003 (1/2979) 0 * Os_TE_322158 Os_TE_322152 Chr5 25695300 25695299 + COPIA2-LTR_OS 6433 0.0020 (6/2977) 0 * * Os_TE_322146 Chr5 25692552 25692551 - COPI2_LTR 4733 0.0003 (1/2876) 0 * * Os_TE_322140 Chr5 25689818 25689819 + OSTE33 1012 0.0013 (4/2999) 0 * Os_TE_322139 Os_TE_322139 Chr5 25689809 25689808 + OSTE33 1012 0.0013 (4/2999) 0 * Os_TE_322140 Os_TE_322057 Chr5 25646998 25646997 - AMYLTP 383 0.5560 (1637/2944) 0 * * Os_TE_322030 Chr5 25637076 25637075 + TELIA 141 0.0004 (1/2846) 0 * * Os_TE_322014 Chr5 25625983 25625984 - COPI2_LTR 4733 0.0003 (1/2992) 0 * Os_TE_322013 Os_TE_322013 Chr5 25625979 25625978 + COPI2_LTR 4733 0.0003 (1/2993) 0 * Os_TE_322014 Os_TE_322011 Chr5 25623786 25623785 + ORSgTEMT01601591 242 0.5525 (1637/2963) 0 * * Os_TE_321998 Chr5 25617224 25617225 - MPING 430 0.0004 (1/2553) 0 * Os_TE_321997 Os_TE_321997 Chr5 25617222 25617221 + MPING 430 0.0004 (1/2601) 0 * Os_TE_321998 Os_TE_321979 Chr5 25606047 25591415 - RIRE2_LTR 11306 0.2815 (843/2995) 1 Intact Os_TE_321969 Os_TE_321969 Chr5 25591415 25606047 - ORSgTERT00201216 11284 0.2825 (846/2995) 1 Intact Os_TE_321979 Os_TE_321966 Chr5 25588560 25588561 - COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_321965 Os_TE_321965 Chr5 25588556 25588555 + COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_321966 Os_TE_321939 Chr5 25575008 25575009 - RETROSAT4_LTR 13504 0.5709 (1696/2971) 0 * Os_TE_321938 Os_TE_321938 Chr5 25575004 25575003 + RETROSAT4_LTR 13504 0.5476 (1570/2867) 0 * Os_TE_321939 Os_TE_321822 Chr5 25538943 25538944 - COPIA2-LTR_OS 6433 0.0007 (2/2969) 0 * * Os_TE_321810 Chr5 25536574 25536575 + INDITTO 263 0.0013 (4/2970) 0 * Os_TE_321809 Os_TE_321809 Chr5 25536572 25536571 - INDITTO 263 0.0013 (4/2976) 0 * Os_TE_321810 Os_TE_321807 Chr5 25535868 25535869 + ORSgTEMT01600486 232 0.2613 (473/1810) 0 * * Os_TE_321804 Chr5 25535417 25535418 + MERMITEB 1610 0.0007 (2/2994) 0 * Os_TE_321803 Os_TE_321803 Chr5 25535413 25535412 + MERMITEB 1610 0.0007 (2/2991) 0 * Os_TE_321804 Os_TE_321802 Chr5 25534260 25534259 + ORSgTEMT01701115 144 0.0007 (2/2978) 0 * Os_TE_321801 Os_TE_321801 Chr5 25534257 25534258 - ORSgTEMT01700029 143 0.0007 (2/2980) 0 * Os_TE_321802 Os_TE_321786 Chr5 25532367 25532368 - AMYLTP 383 0.0999 (294/2942) 0 * Os_TE_321785 Os_TE_321785 Chr5 25532359 25532358 + AMYLTP 383 0.0857 (249/2904) 0 * Os_TE_321786 Os_TE_321782 Chr5 25531061 25531062 + RIREX_LTR 8828 0.0003 (1/2993) 0 * Os_TE_321781 Os_TE_321781 Chr5 25531057 25531056 - RIREX_LTR 8828 0.0003 (1/2993) 0 * Os_TE_321782 Os_TE_321737 Chr5 25512894 25512893 - TRUNCATOR2_LTR 2904 0.0004 (1/2757) 0 * * Os_TE_321728 Chr5 25504485 25504486 - COPI2_LTR 4733 0.0004 (1/2847) 0 * * Os_TE_321663 Chr5 25475236 25475237 - ORSgTETNOOT02565 240 0.5519 (1653/2995) 0 * * Os_TE_321641 Chr5 25461292 25461293 - OSTE33 1012 0.0010 (3/2982) 0 * Os_TE_321640 Os_TE_321640 Chr5 25461283 25461282 - OSTE33 1012 0.0010 (3/2986) 0 * Os_TE_321641 Os_TE_321639 Chr5 25459956 25459957 + ORSiTERTOOT00296 5553 0.0007 (2/2994) 0 * Os_TE_321638 Os_TE_321638 Chr5 25459952 25459951 - SC-3_LTR 5748 0.0007 (2/2992) 0 * Os_TE_321639 Os_TE_321635 Chr5 25458323 25458467 + TNR2A 152 0.2879 (859/2984) 1 Intact * Os_TE_321587 Chr5 25439519 25439520 - COPI2_LTR 4733 0.0007 (2/2922) 0 * Os_TE_321586 Os_TE_321586 Chr5 25439515 25439514 + COPI2_LTR 4733 0.0007 (2/2925) 0 * Os_TE_321587 Os_TE_321583 Chr5 25437100 25437101 - COPIA2-LTR_OS 6433 0.0003 (1/2948) 0 * Os_TE_321582 Os_TE_321582 Chr5 25437096 25437095 + COPIA2-LTR_OS 6433 0.0003 (1/2955) 0 * Os_TE_321583 Os_TE_321581 Chr5 25436907 25436906 - ORSgTEMT02400179 221 0.5513 (1651/2995) 0 * Os_TE_321580 Os_TE_321580 Chr5 25436905 25436906 - ORSgTEMT02400064 212 0.5485 (1640/2990) 0 * Os_TE_321581 Os_TE_321546 Chr5 25429454 25429453 - STOWAWAY51_OS 246 0.0007 (2/2980) 0 * * Os_TE_321544 Chr5 25429231 25416540 - RETRO2_LTR 12874 0.2911 (858/2947) 1 Intact Os_TE_321537 Os_TE_321537 Chr5 25416540 25429231 + ORSgTERTOOT00009 12852 0.2818 (823/2921) 1 Intact Os_TE_321544 Os_TE_321516 Chr5 25405448 25405127 + NDNA2TNA_OS 346 0.3444 (1028/2985) 1 Intact Os_TE_321514 Os_TE_321514 Chr5 25405127 25405457 - NDNA2TNA_OS 346 0.3460 (1035/2991) 1 Intact Os_TE_321516 Os_TE_321467 Chr5 25394575 25394576 + ORSgTEMT00600376 329 0.0013 (4/2995) 0 * Os_TE_321466 Os_TE_321466 Chr5 25394570 25394569 + ORSgTEMT00600272 361 0.0017 (5/2996) 0 * Os_TE_321467 Os_TE_321449 Chr5 25385993 25385994 - INDITTO 263 0.0003 (1/2990) 0 * * Os_TE_321441 Chr5 25382107 25382108 + ORSgTEMT00101674 340 0.0965 (280/2903) 0 * * Os_TE_321410 Chr5 25363870 25363871 + RETRO1_LTR 8314 0.5651 (1663/2943) 0 * * Os_TE_321408 Chr5 25363682 25363683 + RIRE5-LTR_OS 6427 0.0004 (1/2760) 0 * * Os_TE_321374 Chr5 25345687 25345688 - SC-3_LTR 5748 0.0074 (22/2986) 0 * Os_TE_321373 Os_TE_321373 Chr5 25345683 25345682 + ORSiTERTOOT00296 5553 0.0074 (22/2988) 0 * Os_TE_321374 Os_TE_321371 Chr5 25343462 25343463 + TWIF 586 0.0003 (1/2979) 0 * Os_TE_321370 Os_TE_321370 Chr5 25343455 25343454 - ORSiTETNOOT00134 607 0.0003 (1/2973) 0 * Os_TE_321371 Os_TE_321366 Chr5 25341019 25341020 + COPIA2-LTR_OS 6433 0.0027 (8/2988) 0 * Os_TE_321365 Os_TE_321365 Chr5 25341015 25341014 - COPIA2-LTR_OS 6433 0.0030 (9/2988) 0 * Os_TE_321366 Os_TE_321363 Chr5 25339890 25339891 - RIREX_LTR 8828 0.4486 (851/1897) 0 * * Os_TE_321360 Chr5 25336824 25336825 - SC-8_LTR 4951 0.0003 (1/2975) 0 * Os_TE_321359 Os_TE_321359 Chr5 25336820 25336819 + SC-8_LTR 4951 0.0003 (1/2973) 0 * Os_TE_321360 Os_TE_321349 Chr5 25330623 25330622 - SZ-4_LTR 5991 0.0004 (1/2602) 0 * * Os_TE_321301 Chr5 25291433 25291434 + COPI2_LTR 4733 0.0003 (1/2914) 0 * * Os_TE_321289 Chr5 25287095 25287096 + COPI2_LTR 4733 0.0003 (1/2994) 0 * * Os_TE_321274 Chr5 25274328 25274329 + TWIFB1 3737 0.0003 (1/2961) 0 * * Os_TE_321260 Chr5 25267726 25267725 + STOWAWAY51_OS 246 0.0003 (1/2995) 0 * Os_TE_321259 Os_TE_321259 Chr5 25267720 25267721 - STOWAWAY51_OS 246 0.0003 (1/2993) 0 * Os_TE_321260 Os_TE_321255 Chr5 25260952 25260951 - ORSgTEMT02400246 177 0.5710 (1709/2993) 0 * Os_TE_321254 Os_TE_321254 Chr5 25260948 25260949 + ORSgTEMT02400014 229 0.5686 (1700/2990) 0 * Os_TE_321255 Os_TE_321240 Chr5 25251068 25238058 - RETRO2_LTR 12874 0.3178 (952/2996) 1 Intact Os_TE_321219 Os_TE_321219 Chr5 25238058 25251068 + RETRO2_LTR 12874 0.3163 (948/2997) 1 Intact Os_TE_321240 Os_TE_321212 Chr5 25234293 25234294 + RIRE3_LTR 12054 0.0047 (14/2994) 0 * Os_TE_321211 Os_TE_321211 Chr5 25234289 25234288 - RIRE3_LTR 12054 0.0047 (14/2996) 0 * Os_TE_321212 Os_TE_321209 Chr5 25233766 25233767 - SZ-62LTR 3649 0.6666 (1991/2987) 0 * * Os_TE_321202 Chr5 25229751 25229752 - HARB-1_OS 5166 0.0003 (1/2992) 0 * Os_TE_321201 Os_TE_321201 Chr5 25229749 25229748 + HARB-1_OS 5166 0.0003 (1/2992) 0 * Os_TE_321202 Os_TE_321196 Chr5 25227891 25227892 - NDNA1TNA_OS 334 0.0010 (2/2007) 0 * * Os_TE_321099 Chr5 25164923 25164924 + CLOUD-4 520 0.0003 (1/2986) 0 * * Os_TE_321071 Chr5 25152550 25152551 - TRUNCATOR 2918 0.0853 (252/2956) 0 * * Os_TE_321050 Chr5 25144068 25144069 + COPIA2-LTR_OS 6433 0.0037 (11/2996) 0 * Os_TE_321049 Os_TE_321049 Chr5 25144064 25144063 - COPIA2-LTR_OS 6433 0.0040 (12/2997) 0 * Os_TE_321050 Os_TE_321006 Chr5 25129853 25129854 - RETRO2_LTR 12874 0.0384 (115/2997) 0 * * Os_TE_320824 Chr5 25058477 25058478 + SC-7_LTR 4431 0.0003 (1/2995) 0 * Os_TE_320823 Os_TE_320823 Chr5 25058473 25058472 - SC-7_LTR 4431 0.0003 (1/2995) 0 * Os_TE_320824 Os_TE_320822 Chr5 25056475 25056476 + ORSiTERTOOT00296 5553 0.0003 (1/2991) 0 * Os_TE_320821 Os_TE_320821 Chr5 25056471 25056470 - SC-3_LTR 5748 0.0003 (1/2992) 0 * Os_TE_320822 Os_TE_320819 Chr5 25056100 25056099 + SC-8_LTR 4951 0.0003 (1/2995) 0 * * Os_TE_320817 Chr5 25052480 25045736 - MuDR2_OS 6770 0.3213 (935/2910) 1 Intact Os_TE_320816 Os_TE_320816 Chr5 25045736 25052480 + MuDR2_OS 6770 0.3215 (936/2911) 1 Intact Os_TE_320817 Os_TE_320804 Chr5 25040432 25040431 - ORSgTEMT00501356 145 0.6730 (1996/2966) 0 * * Os_TE_320803 Chr5 25040429 25040430 - ORSgTEMT00501447 126 0.6731 (1999/2970) 0 * Os_TE_320802 Os_TE_320802 Chr5 25040426 25040425 + ORSgTEMT00501504 140 0.6701 (1976/2949) 0 * Os_TE_320803 Os_TE_320801 Chr5 25040345 25039947 - OSTE9 421 0.3350 (951/2839) 1 Intact Os_TE_320800 Os_TE_320800 Chr5 25039946 25040344 + OSTE9 421 0.3301 (947/2869) 1 Intact Os_TE_320801 Os_TE_320799 Chr5 25039124 25039125 + ORSgTEMT01601591 242 0.0007 (2/2986) 0 * * Os_TE_320794 Chr5 25037874 25038003 - ORSgTETNOOT01330 145 0.7704 (886/1150) 1 Intact * Os_TE_320785 Chr5 25036597 25036805 + ORSgTEMT01601122 212 0.3402 (1014/2981) 1 Intact * Os_TE_320777 Chr5 25035339 25035338 + MERMITEA 1710 0.0037 (10/2702) 0 * * Os_TE_320775 Chr5 25035074 25034831 + STOWAWAY51_OS 246 0.3341 (977/2924) 1 Intact Os_TE_320771 Os_TE_320771 Chr5 25034831 25035074 - STOWAWAY51_OS 246 0.3220 (939/2916) 1 Intact Os_TE_320775 Os_TE_320747 Chr5 25030072 25030305 + F569 228 0.3483 (1032/2963) 1 Intact * Os_TE_320735 Chr5 25025756 25025755 - STOWAWAY51_OS 246 0.0015 (4/2725) 0 * * Os_TE_320706 Chr5 25015321 25015322 + ORSgTEMT00900471 260 0.0003 (1/2990) 0 * * Os_TE_320696 Chr5 25009857 25009858 - SC-3_LTR 5748 0.0033 (10/2988) 0 * Os_TE_320695 Os_TE_320695 Chr5 25009853 25009852 + ORSiTERTOOT00296 5553 0.0033 (10/2989) 0 * Os_TE_320696 Os_TE_320601 Chr5 24965850 24965851 - AMYLTP 383 0.0870 (260/2990) 0 * * Os_TE_320575 Chr5 24956026 24956027 + COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_320574 Os_TE_320574 Chr5 24956022 24956021 - COPI2_LTR 4733 0.0003 (1/2929) 0 * Os_TE_320575 Os_TE_320559 Chr5 24928750 24953036 + SPMLIKE 10989 0.3398 (1003/2952) 1 Intact * Os_TE_320556 Chr5 24926931 24926930 - SUSU 279 0.0013 (4/2983) 0 * * Os_TE_320551 Chr5 24925489 24925490 - RETROSAT4_LTR 13504 0.5697 (1648/2893) 0 * Os_TE_320550 Os_TE_320550 Chr5 24925485 24925484 + RETROSAT4_LTR 13504 0.5812 (1722/2963) 0 * Os_TE_320551 Os_TE_320545 Chr5 24925007 24925008 - COPIA2-LTR_OS 6433 0.0004 (1/2812) 0 * * Os_TE_320537 Chr5 24924029 24914838 - ORSiTERTOOT00363 4650 0.3568 (1043/2923) 1 Intact Os_TE_320529 Os_TE_320529 Chr5 24914838 24924029 + ORSiTERTOOT00363 4650 0.3608 (1051/2913) 1 Intact Os_TE_320537 Os_TE_320489 Chr5 24896065 24896066 + CACTA-M 1129 0.0013 (4/2993) 0 * Os_TE_320488 Os_TE_320488 Chr5 24896063 24896062 - CACTA-M 1129 0.0013 (4/2994) 0 * Os_TE_320489 Os_TE_320484 Chr5 24892311 24892310 + ORSiTERTOOT00034 791 0.0003 (1/2989) 0 * * Os_TE_320454 Chr5 24881251 24881250 - ORSgTEMT00700002 381 0.0003 (1/2983) 0 * * Os_TE_320441 Chr5 24877847 24877848 - ORSgTETN00200001 10994 0.0693 (207/2985) 0 * Os_TE_320440 Os_TE_320440 Chr5 24877845 24877844 + SPMLIKE 10989 0.0671 (200/2980) 0 * Os_TE_320441 Os_TE_320436 Chr5 24877121 24877120 + STOWAWAY45_OS 266 0.0017 (5/2991) 0 * Os_TE_320435 Os_TE_320435 Chr5 24877120 24877121 - STOWAWAY32_OS 261 0.0010 (3/2991) 0 * Os_TE_320436 Os_TE_320428 Chr5 24873723 24873722 + ORSgTETNOOT00544 147 0.0003 (1/2985) 0 * * Os_TE_320425 Chr5 24872732 24871769 - SZ-9LTR 965 0.3505 (1048/2990) 1 Intact Os_TE_320422 Os_TE_320422 Chr5 24871769 24872732 + SZ-9LTR 965 0.3485 (1041/2987) 1 Intact Os_TE_320425 Os_TE_320420 Chr5 24871621 24871620 + LTR10_OS 202 0.6666 (1991/2987) 0 * * Os_TE_320416 Chr5 24869523 24869524 - TRUNCATOR2_LTR 2904 0.8981 (1586/1766) -1 * * Os_TE_320413 Chr5 24869002 24869001 + GYPSY-A_LTR 8951 0.0007 (1/1495) 0 * * Os_TE_320404 Chr5 24866626 24866625 - STOWAWAY51_OS 246 0.0003 (1/2946) 0 * Os_TE_320403 Os_TE_320403 Chr5 24866620 24866621 + STOWAWAY51_OS 246 0.0003 (1/2930) 0 * Os_TE_320404 Os_TE_320400 Chr5 24866318 24866031 + SINE03_OS 360 0.3661 (1014/2770) 1 Intact * Os_TE_320362 Chr5 24856718 24856717 + INDITTO 263 0.0611 (182/2980) 0 * * Os_TE_320297 Chr5 24837170 24837171 - COPIA2-LTR_OS 6433 0.0014 (4/2946) 0 * Os_TE_320296 Os_TE_320296 Chr5 24837166 24837165 + COPIA2-LTR_OS 6433 0.0010 (3/2942) 0 * Os_TE_320297 Os_TE_320282 Chr5 24833787 24833788 + TRUNCATOR2_LTR 2904 0.0003 (1/2919) 0 * Os_TE_320281 Os_TE_320281 Chr5 24833783 24833782 - TRUNCATOR2_LTR 2904 0.0003 (1/2941) 0 * Os_TE_320282 Os_TE_320280 Chr5 24833635 24833634 - OSLINE1-2 7128 0.0004 (1/2857) 0 * * Os_TE_320251 Chr5 24820689 24820688 + JOUZHENA 607 0.0124 (36/2905) 0 * * Os_TE_320239 Chr5 24813032 24807319 - SZ-35LTR 3853 0.3535 (1057/2990) 1 Intact * Os_TE_320207 Chr5 24801264 24801265 + TRUNCATOR 2918 0.0128 (38/2977) 0 * * Os_TE_320196 Chr5 24798808 24798809 - STOWAWAY1_OS 149 0.0018 (5/2836) 0 * * Os_TE_320189 Chr5 24794800 24794801 + ORSgTETNOOT00908 242 0.0007 (2/2983) 0 * * Os_TE_320180 Chr5 24787964 24787965 - COPI2_LTR 4733 0.0003 (1/2985) 0 * Os_TE_320179 Os_TE_320179 Chr5 24787960 24787959 + COPI2_LTR 4733 0.0003 (1/2988) 0 * Os_TE_320180 Os_TE_320157 Chr5 24782812 24782813 + AMYLTP 383 0.5925 (1771/2989) 0 * Os_TE_320156 Os_TE_320156 Chr5 24782804 24782803 - AMYLTP 383 0.5970 (1788/2995) 0 * Os_TE_320157 Os_TE_320117 Chr5 24765684 24765685 + SC-8_LTR 4951 0.0003 (1/2979) 0 * Os_TE_320116 Os_TE_320116 Chr5 24765680 24765679 - SC-8_LTR 4951 0.0003 (1/2975) 0 * Os_TE_320117 Os_TE_320052 Chr5 24719399 24719398 - F804 170 0.0003 (1/2977) 0 * * Os_TE_320037 Chr5 24713082 24713081 + STOWAWAY51_OS 246 0.0003 (1/2986) 0 * Os_TE_320036 Os_TE_320036 Chr5 24713076 24713077 + ORSgTEMT01601591 242 0.0003 (1/2990) 0 * Os_TE_320037 Os_TE_320010 Chr5 24705692 24705693 + STOWAWAY51_OS 246 0.0003 (1/2992) 0 * * Os_TE_319993 Chr5 24694544 24694545 - SC-3_LTR 5748 0.0003 (1/2998) 0 * Os_TE_319992 Os_TE_319992 Chr5 24694540 24694539 + ORSiTERTOOT00296 5553 0.0003 (1/2999) 0 * Os_TE_319993 Os_TE_319969 Chr5 24682625 24682626 - ORSiTERTOOT00332 5395 0.0010 (3/2995) 0 * Os_TE_319968 Os_TE_319968 Chr5 24682621 24682620 + ORSiTERTOOT00332 5395 0.0010 (3/2995) 0 * Os_TE_319969 Os_TE_319955 Chr5 24671164 24671165 + ORSiTERTOOT00329 5144 0.0087 (26/2976) 0 * Os_TE_319954 Os_TE_319954 Chr5 24671158 24671157 - ORSiTERTOOT00329 5144 0.0107 (32/2977) 0 * Os_TE_319955 Os_TE_319939 Chr5 24662868 24662869 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_319938 Os_TE_319938 Chr5 24662864 24662863 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_319939 Os_TE_319905 Chr5 24646892 24646893 + TWIF 586 0.0007 (2/2978) 0 * Os_TE_319904 Os_TE_319904 Chr5 24646885 24646884 - ORSiTETNOOT00144 607 0.0003 (1/2977) 0 * Os_TE_319905 Os_TE_319851 Chr5 24620830 24620829 + SZ-9LTR 965 0.5841 (1747/2991) 0 * * Os_TE_319837 Chr5 24617163 24617164 + COPI2_LTR 4733 0.0003 (1/2972) 0 * * Os_TE_319836 Chr5 24616678 24616679 + SC-4_LTR 5218 0.0003 (1/2991) 0 * * Os_TE_319833 Chr5 24616474 24616473 - SZ-17_LTR 3387 0.0003 (1/2981) 0 * * Os_TE_319816 Chr5 24612139 24612138 - COPI2_LTR 4733 0.0003 (1/2991) 0 * * Os_TE_319807 Chr5 24610424 24610425 + INDITTO 263 0.0640 (191/2984) 0 * * Os_TE_319804 Chr5 24610142 24610141 + STOWAWAY45_OS 266 0.0017 (5/2992) 0 * Os_TE_319803 Os_TE_319803 Chr5 24610139 24610140 + STOWAWAY45_OS 266 0.0017 (5/2991) 0 * Os_TE_319804 Os_TE_319790 Chr5 24606824 24606825 - COPIA2-LTR_OS 6433 0.0007 (2/2999) 0 * Os_TE_319789 Os_TE_319789 Chr5 24606820 24606819 + COPIA2-LTR_OS 6433 0.0007 (2/2999) 0 * Os_TE_319790 Os_TE_319786 Chr5 24605292 24599984 - MuDR3_OS 8604 0.3321 (973/2930) 1 Intact Os_TE_319783 Os_TE_319783 Chr5 24599984 24605289 - MuDR3_OS 8604 0.3441 (1021/2967) 1 Intact Os_TE_319786 Os_TE_319744 Chr5 24583117 24583116 - STOWAWAY51_OS 246 0.0010 (3/2996) 0 * Os_TE_319743 Os_TE_319743 Chr5 24583114 24583115 - STOWAWAY51_OS 246 0.0010 (3/2994) 0 * Os_TE_319744 Os_TE_319723 Chr5 24572612 24576709 - SZ-48LTR 3632 0.3480 (970/2787) 1 Intact * Os_TE_319720 Chr5 24571997 24571998 + RIREX_LTR 8828 0.0014 (4/2841) 0 * Os_TE_319719 Os_TE_319719 Chr5 24571993 24571992 - RIREX_LTR 8828 0.0014 (4/2811) 0 * Os_TE_319720 Os_TE_319704 Chr5 24559972 24559973 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_319703 Os_TE_319703 Chr5 24559968 24559967 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_319704 Os_TE_319702 Chr5 24559752 24559753 - COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_319701 Os_TE_319701 Chr5 24559748 24559747 + COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_319702 Os_TE_319694 Chr5 24558514 24558513 - COPI2_LTR 4733 0.0003 (1/2989) 0 * * Os_TE_319693 Chr5 24558256 24558255 + ORSgTEMT01601591 242 0.0003 (1/2994) 0 * Os_TE_319692 Os_TE_319692 Chr5 24558250 24558251 + STOWAWAY51_OS 246 0.0003 (1/2997) 0 * Os_TE_319693 Os_TE_319691 Chr5 24557708 24557707 + ORSgTEMT01601591 242 0.0003 (1/2966) 0 * Os_TE_319690 Os_TE_319690 Chr5 24557702 24557703 + STOWAWAY51_OS 246 0.0003 (1/2973) 0 * Os_TE_319691 Os_TE_319624 Chr5 24518745 24518744 + ORSiTERT00100079 4922 0.0648 (193/2979) 0 * * Os_TE_319572 Chr5 24492645 24492644 - ORSgTEMT00100854 331 0.0007 (1/1402) 0 * * Os_TE_319569 Chr5 24492158 24492157 + AMYLTP 383 0.6202 (1842/2970) 0 * * Os_TE_319541 Chr5 24479424 24479425 - STOWAWAY51_OS 246 0.0003 (1/2983) 0 * * Os_TE_319502 Chr5 24452654 24452655 - MPING 430 0.0008 (1/1198) 0 * * Os_TE_319471 Chr5 24445191 24445192 - MPING 430 0.0008 (2/2495) 0 * * Os_TE_319449 Chr5 24431557 24431558 + ORSgTETNOOT01686 252 0.0003 (1/2905) 0 * Os_TE_319448 Os_TE_319448 Chr5 24431553 24431552 + ORSgTETNOOT01834 251 0.0003 (1/2915) 0 * Os_TE_319449 Os_TE_319390 Chr5 24384979 24384978 + ORSgTEMT01601591 242 0.0003 (1/2996) 0 * Os_TE_319389 Os_TE_319389 Chr5 24384973 24384974 + STOWAWAY51_OS 246 0.0003 (1/2993) 0 * Os_TE_319390 Os_TE_319383 Chr5 24372635 24372636 + MPING 430 0.0003 (1/2991) 0 * Os_TE_319382 Os_TE_319382 Chr5 24372633 24372632 - MPING 430 0.0003 (1/2991) 0 * Os_TE_319383 Os_TE_319379 Chr5 24370884 24370885 + MPING 430 0.0003 (1/2963) 0 * Os_TE_319378 Os_TE_319378 Chr5 24370882 24370881 - MPING 430 0.0003 (1/2940) 0 * Os_TE_319379 Os_TE_319356 Chr5 24367160 24367161 - RIRE2_LTR 11306 0.0014 (4/2916) 0 * Os_TE_319355 Os_TE_319355 Chr5 24367156 24367155 + RIRE2_LTR 11306 0.0010 (3/2907) 0 * Os_TE_319356 Os_TE_319354 Chr5 24366328 24366329 + COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_319353 Os_TE_319353 Chr5 24366324 24366323 - COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_319354 Os_TE_319322 Chr5 24354228 24354227 + ORSiTERTOOT00193 851 0.0007 (2/2998) 0 * * Os_TE_319274 Chr5 24309158 24309159 + SC-8_LTR 4951 0.0003 (1/2983) 0 * Os_TE_319273 Os_TE_319273 Chr5 24309154 24309153 - SC-8_LTR 4951 0.0003 (1/2982) 0 * Os_TE_319274 Os_TE_319258 Chr5 24301091 24301092 + ORSgTEMT05000092 279 0.0013 (4/2976) 0 * Os_TE_319257 Os_TE_319257 Chr5 24301085 24301084 - ORSgTEMT05000027 289 0.0010 (3/2974) 0 * Os_TE_319258 Os_TE_319237 Chr5 24299258 24299259 - RETROSAT5_LTR 13878 0.0017 (5/2995) 0 * * Os_TE_319206 Chr5 24292930 24292931 - RIREX_LTR 8828 0.0003 (1/2992) 0 * Os_TE_319205 Os_TE_319205 Chr5 24292926 24292925 + RIREX_LTR 8828 0.0003 (1/2995) 0 * Os_TE_319206 Os_TE_319203 Chr5 24289580 24289581 - SC-3_LTR 5748 0.0003 (1/2997) 0 * Os_TE_319202 Os_TE_319202 Chr5 24289576 24289575 + ORSiTERTOOT00296 5553 0.0003 (1/2995) 0 * Os_TE_319203 Os_TE_319193 Chr5 24286242 24286243 - COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_319192 Os_TE_319192 Chr5 24286238 24286237 + COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_319193 Os_TE_319148 Chr5 24259517 24259516 + ORSgTEMT00600272 361 0.0238 (71/2980) 0 * * Os_TE_319109 Chr5 24238169 24238170 + COPI2_LTR 4733 0.0003 (1/2985) 0 * Os_TE_319108 Os_TE_319108 Chr5 24238165 24238164 - COPI2_LTR 4733 0.0003 (1/2983) 0 * Os_TE_319109 Os_TE_319071 Chr5 24228920 24229264 + ORSgTEMT00101046 330 0.4885 (1462/2993) 1 Intact * Os_TE_319066 Chr5 24226102 24221705 - SZ-22_LTR 4403 0.4895 (1465/2993) 1 Intact Os_TE_319058 Os_TE_319058 Chr5 24221646 24222426 + ORSiTERTOOT00034 791 0.4910 (1470/2994) 1 Intact Os_TE_319066 Os_TE_319053 Chr5 24201803 24201353 + F770 284 0.4924 (1466/2977) 1 Intact * Os_TE_319051 Chr5 24198193 24198194 + MPING 430 0.0003 (1/2994) 0 * * Os_TE_319048 Chr5 24194336 24193988 - ORSgTEMT00100363 345 0.4897 (1455/2971) 1 Intact * Os_TE_319038 Chr5 24188542 24188125 + TNR8-21 428 0.4839 (1443/2982) 1 Intact * Os_TE_319033 Chr5 24187549 24187548 - SC-8_LTR 4951 0.0003 (1/2997) 0 * * Os_TE_319029 Chr5 24182440 24182441 - MUDRN4_OS 332 0.5133 (1487/2897) 0 * * Os_TE_319016 Chr5 24172066 24172067 + MPING 430 0.0003 (1/2984) 0 * Os_TE_319015 Os_TE_319015 Chr5 24172064 24172063 + MPING 430 0.0003 (1/2982) 0 * Os_TE_319016 Os_TE_319013 Chr5 24171111 24171112 - CASTAWAY 364 0.0003 (1/2962) 0 * Os_TE_319012 Os_TE_319012 Chr5 24171109 24171108 + ORSgTEMT00600120 364 0.0003 (1/2960) 0 * Os_TE_319013 Os_TE_318949 Chr5 24159331 24159330 + ORSgTEMT01601591 242 0.0003 (1/2972) 0 * * Os_TE_318945 Chr5 24158753 24158754 + ORSgTEMT00600229 360 0.0017 (5/2916) 0 * * Os_TE_318932 Chr5 24153232 24153231 - STOWAWAY9_OS 235 0.5282 (1575/2982) 0 * * Os_TE_318899 Chr5 24143824 24143825 - ORSgTETNOOT01072 229 0.4626 (1349/2916) 0 * Os_TE_318898 Os_TE_318898 Chr5 24143823 24143822 - INDITTO 263 0.4654 (1365/2933) 0 * Os_TE_318899 Os_TE_318886 Chr5 24142098 24142099 + ORSgTEMT00500315 148 0.0028 (8/2858) 0 * * Os_TE_318880 Chr5 24141414 24141413 - STOWAWAY51_OS 246 0.0003 (1/2975) 0 * * Os_TE_318877 Chr5 24141178 24141179 - NDNA1TNA_OS 334 0.0315 (94/2986) 0 * Os_TE_318876 Os_TE_318876 Chr5 24141176 24141175 + NDNA1TNA_OS 334 0.0318 (95/2983) 0 * Os_TE_318877 Os_TE_318873 Chr5 24139783 24139784 - MPING 430 0.0003 (1/2984) 0 * Os_TE_318872 Os_TE_318872 Chr5 24139781 24139780 + MPING 430 0.0003 (1/2983) 0 * Os_TE_318873 Os_TE_318869 Chr5 24135721 24135722 - COPIA2-LTR_OS 6433 0.0003 (1/2964) 0 * Os_TE_318868 Os_TE_318868 Chr5 24135717 24135716 + COPIA2-LTR_OS 6433 0.0003 (1/2959) 0 * Os_TE_318869 Os_TE_318860 Chr5 24130477 24130478 + COPIA2-LTR_OS 6433 0.0003 (1/2961) 0 * Os_TE_318859 Os_TE_318859 Chr5 24130473 24130472 - COPIA2-LTR_OS 6433 0.0003 (1/2983) 0 * Os_TE_318860 Os_TE_318783 Chr5 24102995 24102996 - SC-8_LTR 4951 0.0003 (1/2996) 0 * Os_TE_318782 Os_TE_318782 Chr5 24102991 24102990 + SC-8_LTR 4951 0.0003 (1/2996) 0 * Os_TE_318783 Os_TE_318779 Chr5 24101068 24101069 + ORSgTEMT01601591 242 0.0003 (1/2973) 0 * * Os_TE_318777 Chr5 24100160 24100161 - OSTE18 129 0.0017 (5/2981) 0 * * Os_TE_318745 Chr5 24088474 24088365 - OSTE18 129 0.5173 (1542/2981) 1 Intact * Os_TE_318732 Chr5 24080253 24080254 - INDITTO 263 0.0047 (14/2980) 0 * * Os_TE_318714 Chr5 24067247 24067248 - TELIA 141 0.0003 (1/2985) 0 * Os_TE_318713 Os_TE_318713 Chr5 24067239 24067238 + TELIA 141 0.0003 (1/2983) 0 * Os_TE_318714 Os_TE_318710 Chr5 24065909 24065910 - SC-3_LTR 5748 0.0003 (1/2980) 0 * Os_TE_318709 Os_TE_318709 Chr5 24065905 24065904 + ORSiTERTOOT00296 5553 0.0003 (1/2978) 0 * Os_TE_318710 Os_TE_318664 Chr5 24045435 24045434 + RETRO2A_LTR 12895 0.0632 (189/2992) 0 * * Os_TE_318655 Chr5 24039075 24039076 + SEVERIN-2 1952 0.0007 (2/2949) 0 * * Os_TE_318646 Chr5 24032579 24032580 - ORSgTETNOOT00053 263 0.0047 (14/2982) 0 * Os_TE_318645 Os_TE_318645 Chr5 24032577 24032576 - INDITTO 263 0.0047 (14/2981) 0 * Os_TE_318646 Os_TE_318636 Chr5 24028787 24028788 + ORSiTERTOOT00296 5553 0.0007 (2/2987) 0 * * Os_TE_318611 Chr5 24017549 24017550 - ORSgTEMT00901723 248 0.0003 (1/2974) 0 * * Os_TE_318554 Chr5 23997074 23997075 - INDITTO 263 0.0040 (12/2991) 0 * Os_TE_318553 Os_TE_318553 Chr5 23997072 23997071 + INDITTO 263 0.0040 (12/2984) 0 * Os_TE_318554 Os_TE_318551 Chr5 23996196 23996197 + AMYLTP 383 0.5906 (1737/2941) 0 * Os_TE_318550 Os_TE_318550 Chr5 23996188 23996187 - AMYLTP 383 0.5887 (1726/2932) 0 * Os_TE_318551 Os_TE_318541 Chr5 23992817 23992818 - SC-8_LTR 4951 0.0003 (1/2980) 0 * * Os_TE_318533 Chr5 23984115 23984114 + HELITRON7_OS 10153 0.0039 (5/1287) 0 * * Os_TE_318497 Chr5 23972694 23960086 + RETRO2_LTR 12874 0.3479 (1027/2952) 1 Intact * Os_TE_318442 Chr5 23948579 23948580 - INDITTO 263 0.6185 (1743/2818) 0 * Os_TE_318441 Os_TE_318441 Chr5 23948577 23948576 + INDITTO 263 0.6187 (1681/2717) 0 * Os_TE_318442 Os_TE_318416 Chr5 23939645 23939644 + NDNA1TNA_OS 334 0.0064 (19/2961) 0 * * Os_TE_318404 Chr5 23938487 23938486 - GAIJIN 147 0.0017 (5/2974) 0 * * Os_TE_318395 Chr5 23936230 23936231 + STOWAWAY51_OS 246 0.0004 (1/2783) 0 * * Os_TE_318357 Chr5 23915851 23915852 + SZ-42LTR 958 0.0074 (22/2992) 0 * * Os_TE_318350 Chr5 23914559 23914560 - SC-3_LTR 5748 0.0003 (1/2990) 0 * Os_TE_318349 Os_TE_318349 Chr5 23914555 23914554 + ORSiTERTOOT00296 5553 0.0003 (1/2987) 0 * Os_TE_318350 Os_TE_318342 Chr5 23913015 23912775 + ORSiTEMT01000008 242 0.3534 (1053/2980) 1 Intact Os_TE_318341 Os_TE_318341 Chr5 23912775 23913015 - ORSiTEMT01000008 242 0.3554 (1062/2988) 1 Intact Os_TE_318342 Os_TE_318330 Chr5 23906703 23906704 - COPI2_LTR 4733 0.0003 (1/2983) 0 * Os_TE_318329 Os_TE_318329 Chr5 23906699 23906698 + COPI2_LTR 4733 0.0003 (1/2989) 0 * Os_TE_318330 Os_TE_318306 Chr5 23888982 23887807 - RETRO2_LTR 12874 0.3787 (1051/2775) 1 Solo_LTR * Os_TE_318232 Chr5 23836845 23836846 - AMYLTP 383 0.0033 (10/2996) 0 * Os_TE_318231 Os_TE_318231 Chr5 23836837 23836836 + AMYLTP 383 0.0030 (9/2995) 0 * Os_TE_318232 Os_TE_318225 Chr5 23833360 23833359 + COPI2_LTR 4733 0.0003 (1/2981) 0 * * Os_TE_318201 Chr5 23809403 23809404 + COPIA2-LTR_OS 6433 0.0003 (1/2986) 0 * Os_TE_318200 Os_TE_318200 Chr5 23809399 23809398 - COPIA2-LTR_OS 6433 0.0007 (2/2987) 0 * Os_TE_318201 Os_TE_318198 Chr5 23808773 23808774 + MuDR2_OS 6770 0.3134 (912/2910) 0 * Os_TE_318197 Os_TE_318197 Chr5 23808766 23808765 - MuDR2_OS 6770 0.2885 (825/2860) 0 * Os_TE_318198 Os_TE_318176 Chr5 23794492 23794493 - INDITTO 263 0.0164 (49/2991) 0 * * Os_TE_318138 Chr5 23763137 23763138 - RIREX_LTR 8828 0.0017 (5/2997) 0 * Os_TE_318137 Os_TE_318137 Chr5 23763133 23763132 + RIREX_LTR 8828 0.0017 (5/2996) 0 * Os_TE_318138 Os_TE_318114 Chr5 23744795 23744796 - SC-8_LTR 4951 0.0030 (9/2992) 0 * Os_TE_318113 Os_TE_318113 Chr5 23744791 23744790 + SC-8_LTR 4951 0.0030 (9/2993) 0 * Os_TE_318114 Os_TE_318112 Chr5 23743455 23743454 + ORSgTEMT00700002 381 0.0003 (1/2958) 0 * * Os_TE_318105 Chr5 23739862 23739861 - COPIA2-LTR_OS 6433 0.0003 (1/2965) 0 * * Os_TE_318068 Chr5 23730709 23730708 + TNR11 811 0.0003 (1/2911) 0 * Os_TE_318067 Os_TE_318067 Chr5 23730708 23730709 - STOWAWAY51_OS 246 0.0003 (1/2909) 0 * Os_TE_318068 Os_TE_318058 Chr5 23730223 23730224 + MPING 430 0.0014 (4/2941) 0 * Os_TE_318057 Os_TE_318057 Chr5 23730221 23730220 - MPING 430 0.0014 (4/2939) 0 * Os_TE_318058 Os_TE_318056 Chr5 23729462 23729463 + ORSiTERT00200154 9386 0.0012 (3/2568) 0 * * Os_TE_318048 Chr5 23726141 23726142 - ORSgTEMT02000063 217 0.0460 (135/2937) 0 * * Os_TE_318020 Chr5 23715475 23715476 - TRUNCATOR 2918 0.0490 (146/2979) 0 * * Os_TE_318018 Chr5 23715459 23715458 + COPIA2-LTR_OS 6433 0.0003 (1/2922) 0 * * Os_TE_318017 Chr5 23715036 23715037 - SZ-43LTR 4039 0.0003 (1/2934) 0 * Os_TE_318016 Os_TE_318016 Chr5 23715032 23715031 + SZ-43LTR 4039 0.0003 (1/2939) 0 * Os_TE_318017 Os_TE_317989 Chr5 23688910 23688911 + SZ-40LTR 2465 0.0010 (3/2976) 0 * Os_TE_317988 Os_TE_317988 Chr5 23688906 23688905 - GYPSY-A_LTR 8951 0.0013 (4/2972) 0 * Os_TE_317989 Os_TE_317978 Chr5 23683825 23683826 - RIREX_LTR 8828 0.0003 (1/2990) 0 * Os_TE_317977 Os_TE_317977 Chr5 23683821 23683820 + RIREX_LTR 8828 0.0003 (1/2994) 0 * Os_TE_317978 Os_TE_317970 Chr5 23682268 23682269 - CASTAWAY 364 0.0349 (104/2982) 0 * * Os_TE_317967 Chr5 23680355 23680356 - WUJI 257 0.0017 (5/2997) 0 * * Os_TE_317964 Chr5 23679960 23678817 + CACTA-D 1038 0.8652 (2567/2967) 1 Intact Os_TE_317961 Os_TE_317961 Chr5 23678820 23679958 - ORSgTETN00200001 10994 0.8606 (2464/2863) 1 Intact Os_TE_317964 Os_TE_317907 Chr5 23663851 23663850 + RETROSAT4_LTR 13504 0.0855 (250/2924) 0 * * Os_TE_317898 Chr5 23659097 23659098 - SC-8_LTR 4951 0.0003 (1/2974) 0 * Os_TE_317897 Os_TE_317897 Chr5 23659093 23659092 + SC-8_LTR 4951 0.0003 (1/2971) 0 * Os_TE_317898 Os_TE_317864 Chr5 23642411 23642410 + COPI2_LTR 4733 0.0003 (1/2965) 0 * * Os_TE_317859 Chr5 23638413 23638414 + RETROSAT4_LTR 13504 0.1517 (447/2946) 0 * Os_TE_317858 Os_TE_317858 Chr5 23638409 23638408 - RETROSAT4_LTR 13504 0.1605 (475/2959) 0 * Os_TE_317859 Os_TE_317826 Chr5 23625796 23625797 - SC-8_LTR 4951 0.0007 (2/2994) 0 * Os_TE_317825 Os_TE_317825 Chr5 23625792 23625791 + SC-8_LTR 4951 0.0007 (2/2994) 0 * Os_TE_317826 Os_TE_317812 Chr5 23617185 23617186 - ORSgTETNOOT00053 263 0.0213 (62/2906) 0 * * Os_TE_317802 Chr5 23615108 23615107 - NDNA1TNA_OS 334 0.0007 (2/2987) 0 * Os_TE_317801 Os_TE_317801 Chr5 23615106 23615107 + NDNA1TNA_OS 334 0.0007 (2/2989) 0 * Os_TE_317802 Os_TE_317791 Chr5 23613637 23613638 + MPING 430 0.0008 (2/2557) 0 * Os_TE_317790 Os_TE_317790 Chr5 23613635 23613634 - MPING 430 0.0012 (3/2574) 0 * Os_TE_317791 Os_TE_317759 Chr5 23604217 23604562 + CASTAWAY 364 0.7099 (2105/2965) 1 Intact * Os_TE_317751 Chr5 23601702 23601703 + COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_317750 Os_TE_317750 Chr5 23601698 23601697 - COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_317751 Os_TE_317732 Chr5 23595299 23595300 - COPI2_LTR 4733 0.0003 (1/2909) 0 * Os_TE_317731 Os_TE_317731 Chr5 23595295 23595294 + COPI2_LTR 4733 0.0003 (1/2904) 0 * Os_TE_317732 Os_TE_317729 Chr5 23592454 23592455 - ORSgTEMT00901345 248 0.0003 (1/2969) 0 * * Os_TE_317697 Chr5 23574342 23574341 - TYPEH 309 0.0456 (66/1446) 0 * * Os_TE_317693 Chr5 23572585 23574290 + MERMITE 1401 0.8337 (1359/1630) 1 Intact * Os_TE_317692 Chr5 23571809 23571810 - ORSgTETNOOT02575 245 0.0911 (272/2987) 0 * * Os_TE_317689 Chr5 23563886 23571565 + MERMITEJ 1498 0.4518 (1351/2990) 1 Intact * Os_TE_317683 Chr5 23563219 23563218 - MuDR4_OS 7610 0.0034 (10/2977) 0 * * Os_TE_317673 Chr5 23561759 23561760 + INDITTO 263 0.0017 (5/2970) 0 * Os_TE_317672 Os_TE_317672 Chr5 23561757 23561756 - INDITTO 263 0.0020 (6/2978) 0 * Os_TE_317673 Os_TE_317669 Chr5 23560990 23560991 - ENSPM4_OS 11610 0.1717 (513/2987) 0 * * Os_TE_317654 Chr5 23549013 23549014 + SPMLIKE 10989 0.0018 (5/2829) 0 * * Os_TE_317649 Chr5 23547834 23547835 - SZ-44LTR 1408 0.0017 (5/2940) 0 * * Os_TE_317647 Chr5 23547384 23547385 - MPING 430 0.0003 (1/2948) 0 * * Os_TE_317640 Chr5 23546865 23546864 + MPING 430 0.0003 (1/2981) 0 * * Os_TE_317638 Chr5 23546466 23546465 + AMYLTP 383 0.0003 (1/2982) 0 * * Os_TE_317613 Chr5 23538677 23538676 - COPI2_LTR 4733 0.0003 (1/2983) 0 * * Os_TE_317612 Chr5 23538559 23538560 - COPIA2-LTR_OS 6433 0.0004 (1/2852) 0 * Os_TE_317611 Os_TE_317611 Chr5 23538555 23538554 + COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_317612 Os_TE_317609 Chr5 23537220 23537221 - COPI2_LTR 4733 0.0003 (1/2972) 0 * Os_TE_317608 Os_TE_317608 Chr5 23537216 23537215 + COPI2_LTR 4733 0.0003 (1/2976) 0 * Os_TE_317609 Os_TE_317607 Chr5 23536353 23536354 - COPI2_LTR 4733 0.0003 (1/2990) 0 * Os_TE_317606 Os_TE_317606 Chr5 23536349 23536348 + COPI2_LTR 4733 0.0003 (1/2990) 0 * Os_TE_317607 Os_TE_317604 Chr5 23536078 23536077 + CACTA-H 1152 0.0518 (155/2990) 0 * * Os_TE_317593 Chr5 23530901 23530902 - ORSgTEMT01701488 202 0.0537 (159/2962) 0 * * Os_TE_317592 Chr5 23528667 23528668 - TYPEU1 380 0.0013 (4/2992) 0 * * Os_TE_317591 Chr5 23528380 23528379 - ORSgTEMT01601834 234 0.1844 (552/2994) 0 * Os_TE_317590 Os_TE_317590 Chr5 23528377 23528378 + ORSgTEMT01601934 207 0.1836 (548/2985) 0 * Os_TE_317591 Os_TE_317588 Chr5 23528193 23528194 + ORSgTEMT00502106 148 0.0524 (157/2994) 0 * * Os_TE_317566 Chr5 23514585 23514826 + ORSgTETNOOT00908 242 0.3796 (1056/2782) 1 Intact * Os_TE_317519 Chr5 23499089 23499090 + NDNA2TNA_OS 346 0.1914 (571/2984) 0 * Os_TE_317518 Os_TE_317518 Chr5 23499085 23499084 + ORSgTEMT00100694 349 0.1084 (296/2731) 0 * Os_TE_317519 Os_TE_317517 Chr5 23498985 23498986 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_317516 Os_TE_317516 Chr5 23498981 23498980 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_317517 Os_TE_317511 Chr5 23497932 23497933 - RETROFIT_LTR 4866 0.0003 (1/2927) 0 * Os_TE_317510 Os_TE_317510 Chr5 23497929 23497928 + ORSiTERTOOT00033 4884 0.0003 (1/2931) 0 * Os_TE_317511 Os_TE_317509 Chr5 23497803 23497804 + STOWAWAY44_OS 240 0.0003 (1/2927) 0 * * Os_TE_317448 Chr5 23471415 23471414 - GYPSY-A_LTR 8951 0.0003 (1/2985) 0 * * Os_TE_317421 Chr5 23462655 23462656 + INDITTO 263 0.0074 (22/2991) 0 * Os_TE_317420 Os_TE_317420 Chr5 23462653 23462652 - INDITTO 263 0.0070 (21/2990) 0 * Os_TE_317421 Os_TE_317414 Chr5 23461280 23461281 - COPIA2-LTR_OS 6433 0.0007 (2/2978) 0 * Os_TE_317413 Os_TE_317413 Chr5 23461276 23461275 + COPIA2-LTR_OS 6433 0.0007 (2/2998) 0 * Os_TE_317414 Os_TE_317339 Chr5 23418533 23418534 - COPI2_LTR 4733 0.0003 (1/2997) 0 * Os_TE_317338 Os_TE_317338 Chr5 23418528 23418527 + COPI2_LTR 4733 0.0003 (1/2997) 0 * Os_TE_317339 Os_TE_317313 Chr5 23412170 23412171 + MPING 430 0.0007 (2/2903) 0 * Os_TE_317312 Os_TE_317312 Chr5 23412168 23412167 - MPING 430 0.0007 (2/2913) 0 * Os_TE_317313 Os_TE_317305 Chr5 23411174 23411173 - STOWAWAY51_OS 246 0.0003 (1/2991) 0 * Os_TE_317304 Os_TE_317304 Chr5 23411171 23411172 + ORSgTEMT01601591 242 0.0003 (1/2985) 0 * Os_TE_317305 Os_TE_317294 Chr5 23409257 23409256 + STOWAWAY51_OS 246 0.0003 (1/2983) 0 * Os_TE_317293 Os_TE_317293 Chr5 23409253 23409254 - TNR11 811 0.0003 (1/2976) 0 * Os_TE_317294 Os_TE_317265 Chr5 23400628 23400629 - GYPSY-A_LTR 8951 0.0003 (1/2949) 0 * * Os_TE_317239 Chr5 23393317 23393318 - COPI2_LTR 4733 0.0007 (2/2996) 0 * * Os_TE_317236 Chr5 23389730 23392904 - LINE-4_OS 3662 0.3899 (1163/2983) 1 Intact * Os_TE_317233 Chr5 23388545 23388546 + COPI2_LTR 4733 0.0003 (1/2935) 0 * * Os_TE_317192 Chr5 23373177 23373176 - ORSgTETNOOT01048 233 0.0003 (1/2958) 0 * * Os_TE_317185 Chr5 23372510 23367313 - MuDR4_OS 7610 0.3906 (1167/2988) 1 Intact * Os_TE_317126 Chr5 23342187 23342186 + MPING 430 0.0003 (1/2990) 0 * * Os_TE_317117 Chr5 23339930 23339931 - EnSpm-13_OS 11171 0.0007 (2/2979) 0 * Os_TE_317116 Os_TE_317116 Chr5 23339928 23339927 + EnSpm-13_OS 11171 0.0007 (2/2979) 0 * Os_TE_317117 Os_TE_317099 Chr5 23338423 23335339 - RETROSAT2LTRA 3112 0.3995 (1168/2924) 1 Intact Os_TE_317098 Os_TE_317098 Chr5 23335339 23338424 + RETROSAT3_LTR 11537 0.8798 (227/258) 1 Solo_LTR Os_TE_317099 Os_TE_317097 Chr5 23323780 23335321 + RETROSAT3_LTR 11537 0.3829 (1109/2896) 1 Intact * Os_TE_317083 Chr5 23319780 23319779 - ORSiTERTOOT00214 738 0.0014 (4/2884) 0 * * Os_TE_317039 Chr5 23292212 23292211 + STOWAWAY51_OS 246 0.0003 (1/2994) 0 * Os_TE_317038 Os_TE_317038 Chr5 23292206 23292207 + ORSgTEMT01601591 242 0.0003 (1/2995) 0 * Os_TE_317039 Os_TE_317036 Chr5 23287646 23287647 + RIREX_LTR 8828 0.0003 (1/2995) 0 * Os_TE_317035 Os_TE_317035 Chr5 23287642 23287641 - RIREX_LTR 8828 0.0003 (1/2994) 0 * Os_TE_317036 Os_TE_316917 Chr5 23238870 23238871 - RIREX_LTR 8828 0.0003 (1/2962) 0 * * Os_TE_316895 Chr5 23231849 23231848 - TRUNCATOR 2918 0.4600 (1006/2187) 0 * Os_TE_316894 Os_TE_316894 Chr5 23231847 23231848 + TRUNCATOR 2918 0.5588 (1477/2643) 0 * Os_TE_316895 Os_TE_316866 Chr5 23221968 23221521 - RIREX_LTR 8828 0.5379 (1581/2939) 1 Solo_LTR Os_TE_316865 Os_TE_316865 Chr5 23221524 23221971 + RIREX_LTR 8828 0.5447 (1604/2945) 1 Solo_LTR Os_TE_316866 Os_TE_316858 Chr5 23220689 23220690 - MuDR3_OS 8604 0.0003 (1/2971) 0 * Os_TE_316857 Os_TE_316857 Chr5 23220680 23220679 - MuDR3_OS 8604 0.0003 (1/2964) 0 * Os_TE_316858 Os_TE_316851 Chr5 23218765 23218766 - ORSgTERT00201216 11284 0.0003 (1/2993) 0 * Os_TE_316850 Os_TE_316850 Chr5 23218761 23218760 - RIRE2_LTR 11306 0.0003 (1/2994) 0 * Os_TE_316851 Os_TE_316847 Chr5 23215949 23215950 + MPING 430 0.0007 (2/2983) 0 * Os_TE_316846 Os_TE_316846 Chr5 23215947 23215946 - MPING 430 0.0007 (2/2979) 0 * Os_TE_316847 Os_TE_316815 Chr5 23212223 23212222 + SEVERIN-2 1952 0.0003 (1/2985) 0 * * Os_TE_316814 Chr5 23212050 23212051 - MPING 430 0.0010 (3/2983) 0 * Os_TE_316813 Os_TE_316813 Chr5 23212048 23212047 + MPING 430 0.0010 (3/2977) 0 * Os_TE_316814 Os_TE_316791 Chr5 23203076 23202839 - ORSgTEMT01601493 303 0.3100 (920/2968) 1 Intact Os_TE_316790 Os_TE_316790 Chr5 23202839 23203076 - ORSgTEMT01601432 239 0.3128 (932/2980) 1 Intact Os_TE_316791 Os_TE_316762 Chr5 23186097 23186098 - NDNA1TNA_OS 334 0.0003 (1/2985) 0 * * Os_TE_316756 Chr5 23184040 23184039 + ORSgTETNOOT00908 242 0.2180 (649/2977) 0 * * Os_TE_316752 Chr5 23182385 23182384 - STOWAWAY51_OS 246 0.0003 (1/2996) 0 * Os_TE_316751 Os_TE_316751 Chr5 23182379 23182380 + STOWAWAY51_OS 246 0.0003 (1/2999) 0 * Os_TE_316752 Os_TE_316749 Chr5 23182259 23182258 + ORSgTEMT01601591 242 0.0010 (3/2991) 0 * Os_TE_316748 Os_TE_316748 Chr5 23182253 23182254 + STOWAWAY51_OS 246 0.0010 (3/2989) 0 * Os_TE_316749 Os_TE_316737 Chr5 23167088 23167089 - ORSgTEMT00600304 361 0.0589 (172/2920) 0 * Os_TE_316736 Os_TE_316736 Chr5 23167085 23167084 - CASTAWAY 364 0.0569 (166/2918) 0 * Os_TE_316737 Os_TE_316735 Chr5 23166978 23166979 - NDNA1TNA_OS 334 0.0007 (2/2909) 0 * Os_TE_316734 Os_TE_316734 Chr5 23166976 23166975 + NDNA1TNA_OS 334 0.0007 (2/2902) 0 * Os_TE_316735 Os_TE_316733 Chr5 23166903 23166904 - NDNA1TNA_OS 334 0.0003 (1/2869) 0 * Os_TE_316732 Os_TE_316732 Chr5 23166901 23166900 + NDNA1TNA_OS 334 0.0003 (1/2876) 0 * Os_TE_316733 Os_TE_316702 Chr5 23156056 23156057 - COPI2_LTR 4733 0.0010 (3/2997) 0 * Os_TE_316701 Os_TE_316701 Chr5 23156052 23156051 + COPI2_LTR 4733 0.0010 (3/2997) 0 * Os_TE_316702 Os_TE_316685 Chr5 23143941 23143940 + NDNA1TNA_OS 334 0.0003 (1/2997) 0 * Os_TE_316684 Os_TE_316684 Chr5 23143922 23143923 - NDNA1TNA_OS 334 0.0003 (1/2994) 0 * Os_TE_316685 Os_TE_316676 Chr5 23135234 23135233 - TRUNCATOR2_LTR 2904 0.0020 (6/2988) 0 * * Os_TE_316639 Chr5 23119392 23119393 - COPIA2-LTR_OS 6433 0.0014 (4/2958) 0 * Os_TE_316638 Os_TE_316638 Chr5 23119388 23119387 + COPIA2-LTR_OS 6433 0.0010 (3/2960) 0 * Os_TE_316639 Os_TE_316631 Chr5 23118524 23118525 - HATOS1 3488 0.1646 (488/2964) 0 * * Os_TE_316603 Chr5 23096268 23096269 - STOWAWAY51_OS 246 0.0003 (1/2995) 0 * * Os_TE_316587 Chr5 23083973 23083974 - RIRE2_LTR 11306 0.0003 (1/2995) 0 * * Os_TE_316585 Chr5 23083926 23083925 - ORSgTETNOOT01760 137 0.0003 (1/2999) 0 * Os_TE_316584 Os_TE_316584 Chr5 23083912 23083913 - ORSgTEMT00502257 142 0.0003 (1/2998) 0 * Os_TE_316585 Os_TE_316546 Chr5 23064562 23064563 - STOWAWAY21_OS 243 0.0007 (2/2938) 0 * * Os_TE_316519 Chr5 23055090 23055089 + ORSgTETNOOT01219 231 0.0346 (103/2975) 0 * * Os_TE_316484 Chr5 23046528 23046527 + COPIA2-LTR_OS 6433 0.0354 (106/2998) 0 * * Os_TE_316473 Chr5 23043792 23043791 + TRUNCATOR 2918 0.0042 (5/1177) -1 * * Os_TE_316420 Chr5 23023481 23023482 - SZ-40LTR 2465 0.0041 (12/2961) 0 * Os_TE_316419 Os_TE_316419 Chr5 23023477 23023476 + GYPSY-A_LTR 8951 0.0040 (12/2970) 0 * Os_TE_316420 Os_TE_316418 Chr5 23023334 23023335 - TRUNCATOR2_LTR 2904 0.0051 (14/2743) 0 * Os_TE_316417 Os_TE_316417 Chr5 23023330 23023329 + ORSiCMCM00100019 2717 0.0047 (13/2739) 0 * Os_TE_316418 Os_TE_316407 Chr5 23020882 23020881 + COPIA2-LTR_OS 6433 0.0007 (2/2824) 0 * * Os_TE_316391 Chr5 23015203 23015204 + RETRO2A_LTR 12895 0.0003 (1/2995) 0 * Os_TE_316390 Os_TE_316390 Chr5 23015199 23015198 - RETRO1_LTR 8314 0.0003 (1/2996) 0 * Os_TE_316391 Os_TE_316367 Chr5 23008117 23008118 + ORSgTEMT00500476 150 0.0007 (2/2916) 0 * * Os_TE_316362 Chr5 23006597 23006598 - INDITTO 263 0.0013 (4/2990) 0 * Os_TE_316361 Os_TE_316361 Chr5 23006595 23006594 - ORSgTETNOOT02000 263 0.0013 (4/2990) 0 * Os_TE_316362 Os_TE_316360 Chr5 23006590 23006591 - MPING 430 0.0003 (1/2995) 0 * Os_TE_316359 Os_TE_316359 Chr5 23006588 23006587 + MPING 430 0.0003 (1/2988) 0 * Os_TE_316360 Os_TE_316347 Chr5 23001586 23001585 + MERMITE18C 1473 0.0003 (1/2978) 0 * * Os_TE_316345 Chr5 22999788 22999787 + ORSiTERTOOT00028 8600 0.0003 (1/2981) 0 * * Os_TE_316306 Chr5 22986473 22986472 - COPIA2-LTR_OS 6433 0.0003 (1/2982) 0 * * Os_TE_316282 Chr5 22973272 22973273 - RIRE2_LTR 11306 0.0003 (1/2909) 0 * * Os_TE_316275 Chr5 22972012 22972011 + TWIFB1 3737 0.0007 (2/2987) 0 * * Os_TE_316251 Chr5 22963565 22963566 + COPI2_LTR 4733 0.0007 (2/2992) 0 * Os_TE_316250 Os_TE_316250 Chr5 22963561 22963560 - COPI2_LTR 4733 0.0007 (2/2993) 0 * Os_TE_316251 Os_TE_316242 Chr5 22953690 22953691 - COPI2_LTR 4733 0.0007 (2/2961) 0 * Os_TE_316241 Os_TE_316241 Chr5 22953686 22953685 + COPI2_LTR 4733 0.0007 (2/2956) 0 * Os_TE_316242 Os_TE_316240 Chr5 22949550 22949551 - GYPSY-A_LTR 8951 0.0030 (9/2994) 0 * Os_TE_316239 Os_TE_316239 Chr5 22949546 22949545 + GYPSY-A_LTR 8951 0.0030 (9/2993) 0 * Os_TE_316240 Os_TE_316234 Chr5 22943036 22943035 + ORSiTERTOOT00296 5553 0.0003 (1/2981) 0 * * Os_TE_316232 Chr5 22939459 22939460 - ORSiTERT00100062 5674 0.0003 (1/2992) 0 * Os_TE_316231 Os_TE_316231 Chr5 22939455 22939454 + OSTONOR1_LTR 6440 0.0003 (1/2993) 0 * Os_TE_316232 Os_TE_316223 Chr5 22935659 22935658 - ORSgTEMT01601432 239 0.6073 (1791/2949) 0 * Os_TE_316222 Os_TE_316222 Chr5 22935656 22935657 + ORSgTEMT01602181 239 0.6130 (1823/2974) 0 * Os_TE_316223 Os_TE_316182 Chr5 22926793 22927003 - ORSgTEMT00900314 216 0.3196 (954/2985) 1 Intact * Os_TE_316174 Chr5 22924296 22924297 - Cassandra_OS-LTR 764 0.0004 (1/2318) 0 * * Os_TE_316157 Chr5 22918296 22918297 + ORSgTEMT00600120 364 0.0332 (99/2983) 0 * Os_TE_316156 Os_TE_316156 Chr5 22918294 22918293 - CASTAWAY 364 0.0332 (99/2983) 0 * Os_TE_316157 Os_TE_316150 Chr5 22917552 22917553 - RIREX_LTR 8828 0.0023 (7/2983) 0 * Os_TE_316149 Os_TE_316149 Chr5 22917548 22917547 + RIREX_LTR 8828 0.0023 (7/2984) 0 * Os_TE_316150 Os_TE_316148 Chr5 22917117 22917118 + MPING 430 0.0007 (2/2974) 0 * Os_TE_316147 Os_TE_316147 Chr5 22917115 22917114 - MPING 430 0.0007 (2/2978) 0 * Os_TE_316148 Os_TE_316125 Chr5 22907488 22907487 - MuDR4_OS 7610 0.0004 (1/2802) 0 * * Os_TE_316076 Chr5 22876708 22876709 - RIREX_LTR 8828 0.0010 (3/2988) 0 * Os_TE_316075 Os_TE_316075 Chr5 22876704 22876703 + RIREX_LTR 8828 0.0010 (3/2986) 0 * Os_TE_316076 Os_TE_316072 Chr5 22875160 22875159 - SC-3_LTR 5748 0.0037 (11/2995) 0 * * Os_TE_316062 Chr5 22870095 22870096 + COPIA2-LTR_OS 6433 0.0003 (1/2932) 0 * Os_TE_316061 Os_TE_316061 Chr5 22870091 22870090 - COPIA2-LTR_OS 6433 0.0010 (3/2924) 0 * Os_TE_316062 Os_TE_315984 Chr5 22852186 22848176 - SZ-35LTR 3853 0.7997 (958/1198) 1 Intact Os_TE_315982 Os_TE_315982 Chr5 22848176 22852186 + RETROSAT4_LTR 13504 0.7850 (891/1135) 1 Solo_LTR Os_TE_315984 Os_TE_315966 Chr5 22842934 22842933 - AMYLTP 383 0.0003 (1/2904) 0 * * Os_TE_315959 Chr5 22838765 22838766 - SC-3_LTR 5748 0.0003 (1/2991) 0 * Os_TE_315958 Os_TE_315958 Chr5 22838761 22838760 + ORSiTERTOOT00296 5553 0.0003 (1/2991) 0 * Os_TE_315959 Os_TE_315932 Chr5 22827791 22827792 + RIREX_LTR 8828 0.0023 (7/2990) 0 * Os_TE_315931 Os_TE_315931 Chr5 22827787 22827786 - RIREX_LTR 8828 0.0027 (8/2990) 0 * Os_TE_315932 Os_TE_315916 Chr5 22825365 22825366 + ORSiTERTOOT00028 8600 0.0439 (130/2962) 0 * Os_TE_315915 Os_TE_315915 Chr5 22825361 22825360 - TRUNCATOR2_LTR 2904 0.0451 (134/2970) 0 * Os_TE_315916 Os_TE_315847 Chr5 22797874 22797875 - RIREX_LTR 8828 0.0003 (1/2995) 0 * Os_TE_315846 Os_TE_315846 Chr5 22797870 22797869 + RIREX_LTR 8828 0.0003 (1/2996) 0 * Os_TE_315847 Os_TE_315841 Chr5 22794400 22794399 - SC-8_LTR 4951 0.0007 (2/2980) 0 * * Os_TE_315831 Chr5 22791604 22791605 - SC-3_LTR 5748 0.0003 (1/2986) 0 * Os_TE_315830 Os_TE_315830 Chr5 22791600 22791599 + ORSiTERTOOT00296 5553 0.0003 (1/2988) 0 * Os_TE_315831 Os_TE_315822 Chr5 22786303 22786304 - ORSgTERT00201216 11284 0.0456 (135/2963) 0 * Os_TE_315821 Os_TE_315821 Chr5 22786299 22786298 - RIRE2_LTR 11306 0.0453 (134/2959) 0 * Os_TE_315822 Os_TE_315820 Chr5 22783748 22783749 - SC-3_LTR 5748 0.0013 (4/2984) 0 * Os_TE_315819 Os_TE_315819 Chr5 22783744 22783743 - SC-3_LTR 5748 0.0013 (4/2983) 0 * Os_TE_315820 Os_TE_315809 Chr5 22770955 22770956 - SC-8_LTR 4951 0.0007 (2/2978) 0 * * Os_TE_315782 Chr5 22753883 22753882 + ORSiTERTOOT00226 792 0.0003 (1/2926) 0 * * Os_TE_315759 Chr5 22743847 22743848 - COPIA2-LTR_OS 6433 0.0013 (4/2998) 0 * Os_TE_315758 Os_TE_315758 Chr5 22743843 22743842 + COPIA2-LTR_OS 6433 0.0013 (4/2998) 0 * Os_TE_315759 Os_TE_315698 Chr5 22723287 22723288 - MuDR4_OS 7610 0.0003 (1/2924) 0 * * Os_TE_315696 Chr5 22723178 22723179 + ORSiTERTOOT00226 792 0.0030 (9/2951) 0 * Os_TE_315695 Os_TE_315695 Chr5 22723174 22723173 + ORSiTERTOOT00226 792 0.0031 (9/2944) 0 * Os_TE_315696 Os_TE_315677 Chr5 22715391 22715392 - COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_315676 Os_TE_315676 Chr5 22715387 22715386 + COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_315677 Os_TE_315651 Chr5 22705718 22705717 + ORSgTEMT00700017 386 0.0003 (1/2972) 0 * * Os_TE_315641 Chr5 22702130 22702131 - SZ-48LTR 3632 0.0017 (5/2988) 0 * * Os_TE_315631 Chr5 22696495 22696496 + RIREX_LTR 8828 0.0007 (2/2989) 0 * * Os_TE_315603 Chr5 22686253 22686254 + ORSgTEMT00300063 413 0.0282 (84/2977) 0 * * Os_TE_315516 Chr5 22659555 22659556 - SZ-67LTR 1540 0.1495 (446/2983) 0 * Os_TE_315515 Os_TE_315515 Chr5 22659551 22659550 + SZ-67LTR 1540 0.1401 (415/2962) 0 * Os_TE_315516 Os_TE_315439 Chr5 22632045 22632046 - ORSiTETNOOT00134 607 0.0003 (1/2993) 0 * * Os_TE_315423 Chr5 22621044 22621045 - OLO24 345 0.0020 (6/2990) 0 * Os_TE_315422 Os_TE_315422 Chr5 22621042 22621041 + OLO24 345 0.0020 (6/2991) 0 * Os_TE_315423 Os_TE_315413 Chr5 22615437 22609521 - MDR2 6967 0.3253 (949/2917) 1 Intact Os_TE_315412 Os_TE_315412 Chr5 22609521 22615432 + MDR2 6967 0.3244 (944/2910) 1 Intact Os_TE_315413 Os_TE_315338 Chr5 22571226 22571227 - DS-RICE2N 613 0.4364 (1304/2988) 0 * Os_TE_315337 Os_TE_315337 Chr5 22571219 22571218 + DS-RICE2N 613 0.4332 (1290/2978) 0 * Os_TE_315338 Os_TE_315331 Chr5 22570859 22570860 - ORSgTEMT02400179 221 0.0003 (1/2995) 0 * * Os_TE_315303 Chr5 22556735 22556736 - SC-8_LTR 4951 0.0003 (1/2982) 0 * Os_TE_315302 Os_TE_315302 Chr5 22556731 22556730 + SC-8_LTR 4951 0.0003 (1/2980) 0 * Os_TE_315303 Os_TE_315250 Chr5 22517407 22517408 - RIREX_LTR 8828 0.0024 (7/2968) 0 * * Os_TE_315249 Chr5 22517015 22517016 - MPING 430 0.0192 (57/2967) 0 * Os_TE_315248 Os_TE_315248 Chr5 22517013 22517012 + MPING 430 0.0198 (59/2977) 0 * Os_TE_315249 Os_TE_315226 Chr5 22507079 22507080 + TELIA 141 0.0004 (1/2722) 0 * Os_TE_315225 Os_TE_315225 Chr5 22507071 22507070 - TELIA 141 0.0004 (1/2758) 0 * Os_TE_315226 Os_TE_315205 Chr5 22499335 22499336 + MPING 430 0.0199 (59/2967) 0 * Os_TE_315204 Os_TE_315204 Chr5 22499333 22499332 - MPING 430 0.0199 (59/2972) 0 * Os_TE_315205 Os_TE_315164 Chr5 22479384 22479385 - ORSgTERT00200842 1080 0.0003 (1/2973) 0 * * Os_TE_315159 Chr5 22478558 22478557 + INDITTO 263 0.0010 (3/2947) 0 * * Os_TE_315158 Chr5 22478547 22478546 + ORSgTETNOOT02406 265 0.6830 (2008/2940) 0 * * Os_TE_315128 Chr5 22462758 22462757 - STOWAWAY45_OS 266 0.0010 (3/2980) 0 * Os_TE_315127 Os_TE_315127 Chr5 22462755 22462756 + STOWAWAY45_OS 266 0.0013 (4/2969) 0 * Os_TE_315128 Os_TE_315125 Chr5 22462447 22462446 - STOWAWAY24_OS 224 0.0003 (1/2952) 0 * * Os_TE_315119 Chr5 22462183 22462184 - STOWAWAY11_OS 292 0.6370 (1792/2813) 0 * * Os_TE_315114 Chr5 22461089 22461090 - ORSgTEMT00502257 142 0.6526 (1935/2965) 0 * Os_TE_315113 Os_TE_315113 Chr5 22461087 22461086 - ORSgTEMT00501504 140 0.6535 (1948/2981) 0 * Os_TE_315114 Os_TE_315088 Chr5 22455721 22455722 + ORSgTEMT00600576 351 0.0053 (16/2995) 0 * Os_TE_315087 Os_TE_315087 Chr5 22455718 22455717 + ORSgTEMT00600272 361 0.0053 (16/2996) 0 * Os_TE_315088 Os_TE_315068 Chr5 22450268 22450269 + RIREX_LTR 8828 0.0003 (1/2987) 0 * Os_TE_315067 Os_TE_315067 Chr5 22450264 22450263 - RIREX_LTR 8828 0.0003 (1/2984) 0 * Os_TE_315068 Os_TE_315062 Chr5 22447528 22447529 + ORSgTETNOOT01834 251 0.0020 (6/2978) 0 * Os_TE_315061 Os_TE_315061 Chr5 22447526 22447525 + ORSgTETNOOT01834 251 0.0020 (6/2976) 0 * Os_TE_315062 Os_TE_315014 Chr5 22424551 22424550 + STOWAWAY44_OS 240 0.6820 (2035/2984) 0 * * Os_TE_314974 Chr5 22403069 22403070 - SC-8_LTR 4951 0.0003 (1/2984) 0 * Os_TE_314973 Os_TE_314973 Chr5 22403065 22403064 + SC-8_LTR 4951 0.0003 (1/2981) 0 * Os_TE_314974 Os_TE_314916 Chr5 22370257 22370258 + ORSgTETNOOT00221 261 0.0053 (16/2993) 0 * * Os_TE_314884 Chr5 22360781 22360782 - STOWAWAY51_OS 246 0.0003 (1/2990) 0 * * Os_TE_314869 Chr5 22352626 22352627 + ORSiTEMT01000003 229 0.0003 (1/2975) 0 * * Os_TE_314867 Chr5 22352316 22352317 - COPIA2-LTR_OS 6433 0.0007 (2/2993) 0 * * Os_TE_314832 Chr5 22334917 22334918 - STOWAWAY51_OS 246 0.0118 (35/2954) 0 * * Os_TE_314831 Chr5 22334768 22334769 - INDITTO 263 0.4269 (1240/2905) 0 * Os_TE_314830 Os_TE_314830 Chr5 22334766 22334765 - ORSgTETNOOT02417 265 0.4243 (1224/2885) 0 * Os_TE_314831 Os_TE_314807 Chr5 22330440 22330439 - STOWAWAY51_OS 246 0.0003 (1/2952) 0 * Os_TE_314806 Os_TE_314806 Chr5 22330434 22330435 + STOWAWAY51_OS 246 0.0003 (1/2957) 0 * Os_TE_314807 Os_TE_314805 Chr5 22330296 22330297 + OLO24 345 0.2766 (813/2939) 0 * Os_TE_314804 Os_TE_314804 Chr5 22330294 22330293 - OLO24 345 0.2849 (838/2941) 0 * Os_TE_314805 Os_TE_314802 Chr5 22330183 22330184 - COPIA2-LTR_OS 6433 0.0003 (1/2944) 0 * Os_TE_314801 Os_TE_314801 Chr5 22330179 22330178 + COPIA2-LTR_OS 6433 0.0003 (1/2947) 0 * Os_TE_314802 Os_TE_314792 Chr5 22329736 22329737 + GYPSY-A_LTR 8951 0.0031 (9/2870) 0 * * Os_TE_314748 Chr5 22325864 22325865 - MuDR3_OS 8604 0.2613 (773/2958) 0 * Os_TE_314747 Os_TE_314747 Chr5 22325856 22325855 + MuDR3_OS 8604 0.2762 (826/2991) 0 * Os_TE_314748 Os_TE_314721 Chr5 22308859 22308860 + TRUNCATOR 2918 0.0003 (1/2998) 0 * * Os_TE_314712 Chr5 22302158 22302159 + RETRO2A_LTR 12895 0.4410 (803/1821) 0 * Os_TE_314711 Os_TE_314711 Chr5 22302154 22302153 - RETRO1_LTR 8314 0.2810 (840/2989) 0 * Os_TE_314712 Os_TE_314689 Chr5 22292875 22292876 - NDNA1TNA_OS 334 0.0017 (5/2982) 0 * Os_TE_314688 Os_TE_314688 Chr5 22292873 22292872 + NDNA1TNA_OS 334 0.0017 (5/2985) 0 * Os_TE_314689 Os_TE_314678 Chr5 22287671 22287670 + OLO24 345 0.0003 (1/2989) 0 * * Os_TE_314616 Chr5 22267192 22267191 - DNAUN1_OS 408 0.2847 (839/2947) 0 * * Os_TE_314597 Chr5 22261898 22261897 - STOWAWAY51_OS 246 0.0141 (42/2989) 0 * Os_TE_314596 Os_TE_314596 Chr5 22261895 22261896 + ORSgTEMT01601591 242 0.0140 (42/2990) 0 * Os_TE_314597 Os_TE_314593 Chr5 22260309 22260310 + ORSiTERTOOT00074 4935 0.0003 (1/2995) 0 * Os_TE_314592 Os_TE_314592 Chr5 22260305 22260304 - ORSiTERTOOT00074 4935 0.0003 (1/2995) 0 * Os_TE_314593 Os_TE_314591 Chr5 22259813 22259814 + RETRO2A_LTR 12895 0.0227 (68/2995) 0 * * Os_TE_314584 Chr5 22253367 22253368 - COPIA2-LTR_OS 6433 0.2790 (834/2989) 0 * Os_TE_314583 Os_TE_314583 Chr5 22253363 22253362 + COPIA2-LTR_OS 6433 0.2456 (692/2818) 0 * Os_TE_314584 Os_TE_314545 Chr5 22244268 22244269 + ORSgTEMT00900253 248 0.6854 (2050/2991) 0 * * Os_TE_314538 Chr5 22243740 22243741 - ORSiTETNOOT00216 3569 0.0017 (5/2987) 0 * Os_TE_314537 Os_TE_314537 Chr5 22243733 22243732 + TWIFBIG 3567 0.0013 (4/2986) 0 * Os_TE_314538 Os_TE_314535 Chr5 22241970 22241969 - STOWAWAY51_OS 246 0.0003 (1/2991) 0 * Os_TE_314534 Os_TE_314534 Chr5 22241964 22241965 + STOWAWAY51_OS 246 0.0003 (1/2992) 0 * Os_TE_314535 Os_TE_314519 Chr5 22236023 22235594 + MPING 430 0.0645 (173/2683) 1 Intact Os_TE_314518 Os_TE_314518 Chr5 22235594 22236023 - MPING 430 0.0561 (168/2994) 1 Intact Os_TE_314519 Os_TE_314515 Chr5 22235159 22235160 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_314514 Os_TE_314514 Chr5 22235155 22235154 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_314515 Os_TE_314456 Chr5 22215174 22215173 + TRSA_OS 353 0.0003 (1/2873) 0 * * Os_TE_314450 Chr5 22213665 22213666 - STOWAWAY44_OS 240 0.0003 (1/2997) 0 * * Os_TE_314415 Chr5 22202138 22202137 - STOWAWAY44_OS 240 0.0274 (82/2996) 0 * Os_TE_314414 Os_TE_314414 Chr5 22202135 22202136 + STOWAWAY44_OS 240 0.0277 (83/2999) 0 * Os_TE_314415 Os_TE_314392 Chr5 22190310 22190309 + GYPSY-A_LTR 8951 0.2740 (738/2693) 0 * * Os_TE_314389 Chr5 22189043 22189044 + DS-RICE2N 613 0.0040 (12/2992) 0 * Os_TE_314388 Os_TE_314388 Chr5 22189036 22189035 - DS-RICE2N 613 0.0037 (11/2991) 0 * Os_TE_314389 Os_TE_314362 Chr5 22174656 22174657 + GAIJIN 147 0.0004 (1/2415) 0 * * Os_TE_314346 Chr5 22163681 22163680 + TRUNCATOR 2918 0.4117 (1233/2995) 0 * Os_TE_314345 Os_TE_314345 Chr5 22163680 22163681 - TRUNCATOR 2918 0.4044 (1203/2975) 0 * Os_TE_314346 Os_TE_314336 Chr5 22154484 22154483 - OSLINE1-4 4779 0.0010 (1/1008) 0 * * Os_TE_314324 Chr5 22149386 22149387 - INDITTO 263 0.4094 (1224/2990) 0 * Os_TE_314323 Os_TE_314323 Chr5 22149384 22149383 + INDITTO 263 0.4095 (1226/2994) 0 * Os_TE_314324 Os_TE_314312 Chr5 22145414 22145415 + TOURIST-IX 326 0.6697 (2007/2997) 0 * Os_TE_314311 Os_TE_314311 Chr5 22145410 22145409 + ORSgTETNOOT01686 252 0.6664 (1986/2980) 0 * Os_TE_314312 Os_TE_314278 Chr5 22128910 22128911 + COPI2_LTR 4733 0.0043 (13/2990) 0 * Os_TE_314277 Os_TE_314277 Chr5 22128906 22128905 - COPI2_LTR 4733 0.0050 (15/2992) 0 * Os_TE_314278 Os_TE_314251 Chr5 22120227 22120228 + OSTE33 1012 0.0137 (41/2988) 0 * Os_TE_314250 Os_TE_314250 Chr5 22120218 22120217 + OSTE33 1012 0.0140 (42/2992) 0 * Os_TE_314251 Os_TE_314229 Chr5 22115461 22115460 - DITTO3 260 0.0022 (6/2771) 0 * * Os_TE_314222 Chr5 22113812 22113813 - ORSgTEMT01700410 135 0.0005 (1/1976) 0 * * Os_TE_314220 Chr5 22110225 22110226 + SPMLIKE 10989 0.0017 (5/2979) 0 * * Os_TE_314195 Chr5 22092763 22092764 + TRUNCATOR 2918 0.0131 (39/2969) 0 * Os_TE_314194 Os_TE_314194 Chr5 22092757 22092756 - ORSiTERT00200154 9386 0.0111 (33/2961) 0 * Os_TE_314195 Os_TE_314164 Chr5 22083499 22083500 + MPING 430 0.0003 (1/2930) 0 * Os_TE_314163 Os_TE_314163 Chr5 22083497 22083496 - MPING 430 0.0003 (1/2925) 0 * Os_TE_314164 Os_TE_314162 Chr5 22082522 22082523 - ORSiRGRR00000001 280 0.0003 (1/2973) 0 * * Os_TE_314150 Chr5 22077884 22077885 - ORSgTETNOOT02565 240 0.6341 (1764/2782) 0 * * Os_TE_314146 Chr5 22072544 22072545 + ORSiTERTOOT00296 5553 0.0010 (3/2981) 0 * Os_TE_314145 Os_TE_314145 Chr5 22072540 22072539 - SC-3_LTR 5748 0.0010 (3/2980) 0 * Os_TE_314146 Os_TE_314144 Chr5 22072012 22072013 - HATOS1 3488 0.0164 (49/2987) 0 * * Os_TE_314138 Chr5 22060605 22060606 - RIREX_LTR 8828 0.0007 (2/2989) 0 * Os_TE_314137 Os_TE_314137 Chr5 22060601 22060600 + RIREX_LTR 8828 0.0007 (2/2991) 0 * Os_TE_314138 Os_TE_314122 Chr5 22057503 22057504 - MERMITED 1572 0.0024 (3/1272) -1 * * Os_TE_314109 Chr5 22054117 22054118 + INDITTO 263 0.0003 (1/2970) 0 * * Os_TE_314063 Chr5 22028583 22028584 - ORSgTEMT02400179 221 0.0040 (12/2983) 0 * * Os_TE_314060 Chr5 22027351 22027352 + MPING 430 0.0003 (1/2963) 0 * Os_TE_314059 Os_TE_314059 Chr5 22027349 22027348 - MPING 430 0.0003 (1/2970) 0 * Os_TE_314060 Os_TE_314051 Chr5 22026079 22026080 + ORSgTETNOOT00908 242 0.0007 (2/2997) 0 * Os_TE_314050 Os_TE_314050 Chr5 22026077 22026076 - ORSgTETNOOT00908 242 0.0007 (2/2995) 0 * Os_TE_314051 Os_TE_314047 Chr5 22023744 22023745 - COPIA2-LTR_OS 6433 0.0007 (2/2995) 0 * Os_TE_314046 Os_TE_314046 Chr5 22023740 22023739 + COPIA2-LTR_OS 6433 0.0007 (2/2984) 0 * Os_TE_314047 Os_TE_314023 Chr5 22001483 22001484 - COPI2_LTR 4733 0.0010 (3/2998) 0 * Os_TE_314022 Os_TE_314022 Chr5 22001479 22001478 + COPI2_LTR 4733 0.0010 (3/2999) 0 * Os_TE_314023 Os_TE_313993 Chr5 21970927 21970928 - RETROSAT2LTR 12796 0.6466 (1936/2994) 0 * Os_TE_313992 Os_TE_313992 Chr5 21970925 21970924 + RETROSAT2LTR 12796 0.6314 (1843/2919) 0 * Os_TE_313993 Os_TE_313974 Chr5 21963873 21963874 + INDITTO 263 0.0003 (1/2998) 0 * Os_TE_313973 Os_TE_313973 Chr5 21963871 21963870 - INDITTO 263 0.0003 (1/2999) 0 * Os_TE_313974 Os_TE_313968 Chr5 21962772 21962773 + COPIA2-LTR_OS 6433 0.0013 (4/2998) 0 * Os_TE_313967 Os_TE_313967 Chr5 21962737 21962736 - COPIA2-LTR_OS 6433 0.0013 (4/2997) 0 * Os_TE_313968 Os_TE_313916 Chr5 21937994 21937995 - RETRO2A_LTR 12895 0.2149 (637/2964) 0 * * Os_TE_313895 Chr5 21930109 21930108 - COPI2_LTR 4733 0.0003 (1/2999) 0 * * Os_TE_313872 Chr5 21913865 21913866 + RIRE5-LTR_OS 6427 0.0014 (4/2930) 0 * * Os_TE_313829 Chr5 21881473 21881474 + RETRO2_LTR 12874 0.6192 (1750/2826) 0 * * Os_TE_313808 Chr5 21875971 21875972 - MDR2 6967 0.0017 (5/2993) 0 * Os_TE_313807 Os_TE_313807 Chr5 21875963 21875962 - MDR2 6967 0.0017 (5/2992) 0 * Os_TE_313808 Os_TE_313795 Chr5 21872847 21862752 + RETRO2_LTR 12874 0.3556 (1058/2975) 1 Intact Os_TE_313787 Os_TE_313787 Chr5 21862752 21872847 - RETRO2_LTR 12874 0.3612 (1079/2987) 1 Intact Os_TE_313795 Os_TE_313762 Chr5 21858315 21858316 - RIREX_LTR 8828 0.0013 (4/2984) 0 * * Os_TE_313732 Chr5 21837461 21837462 - ORSgTEMT00700002 381 0.0003 (1/2991) 0 * Os_TE_313731 Os_TE_313731 Chr5 21837460 21837459 + MUDRN5_OS 374 0.0003 (1/2985) 0 * Os_TE_313732 Os_TE_313727 Chr5 21835096 21835095 - DNAUN1_OS 408 0.6442 (1908/2962) 0 * * Os_TE_313726 Chr5 21835044 21829782 + OSMU5 4881 0.3653 (1047/2866) 1 Intact * Os_TE_313722 Chr5 21829737 21829738 + RIREX_LTR 8828 0.0018 (5/2854) 0 * * Os_TE_313706 Chr5 21819979 21819980 + MPING 430 0.0003 (1/2993) 0 * Os_TE_313705 Os_TE_313705 Chr5 21819977 21819976 - MPING 430 0.0003 (1/2990) 0 * Os_TE_313706 Os_TE_313666 Chr5 21798894 21798893 + ORSgTEMT01601591 242 0.0003 (1/2959) 0 * * Os_TE_313635 Chr5 21785198 21785197 - RIREX_LTR 8828 0.0003 (1/2873) 0 * * Os_TE_313619 Chr5 21780400 21780399 + COPI2_LTR 4733 0.0003 (1/2970) 0 * * Os_TE_313618 Chr5 21780265 21780266 - RIREX_LTR 8828 0.0007 (2/2968) 0 * Os_TE_313617 Os_TE_313617 Chr5 21780261 21780260 + RIREX_LTR 8828 0.0007 (2/2957) 0 * Os_TE_313618 Os_TE_313616 Chr5 21779417 21779418 + RETROSAT4_LTR 13504 0.0034 (10/2951) 0 * Os_TE_313615 Os_TE_313615 Chr5 21779413 21779412 - SZ-35LTR 3853 0.0041 (12/2957) 0 * Os_TE_313616 Os_TE_313596 Chr5 21769788 21769787 - RETRO2_LTR 12874 0.0003 (1/2865) 0 * * Os_TE_313563 Chr5 21757740 21757741 + F118 179 0.6951 (2075/2985) 0 * Os_TE_313562 Os_TE_313562 Chr5 21757733 21757732 - F118 179 0.6963 (2077/2983) 0 * Os_TE_313563 Os_TE_313548 Chr5 21754365 21754366 + SEVERIN-2 1952 0.0017 (5/2988) 0 * * Os_TE_313531 Chr5 21746539 21746540 + COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_313530 Os_TE_313530 Chr5 21746535 21746534 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_313531 Os_TE_313522 Chr5 21740946 21740947 + EnSpm-13_OS 11171 0.0003 (1/2927) 0 * * Os_TE_313519 Chr5 21736765 21736766 - ORSgTEMT03000007 372 0.6936 (2012/2901) 0 * * Os_TE_313490 Chr5 21726454 21726455 + CACTA-H 1152 0.0025 (7/2819) 0 * Os_TE_313489 Os_TE_313489 Chr5 21726452 21726451 - CACTA-H 1152 0.0039 (11/2845) 0 * Os_TE_313490 Os_TE_313481 Chr5 21724805 21724804 + ORSgTEMT01601591 242 0.0003 (1/2992) 0 * Os_TE_313480 Os_TE_313480 Chr5 21724802 21724803 - STOWAWAY51_OS 246 0.0003 (1/2988) 0 * Os_TE_313481 Os_TE_313474 Chr5 21720944 21720943 + STOWAWAY51_OS 246 0.0003 (1/2998) 0 * Os_TE_313473 Os_TE_313473 Chr5 21720938 21720939 - STOWAWAY51_OS 246 0.0003 (1/2998) 0 * Os_TE_313474 Os_TE_313465 Chr5 21715741 21715742 + MuDR3_OS 8604 0.6574 (1907/2901) 0 * Os_TE_313464 Os_TE_313464 Chr5 21715733 21715732 - MuDR3_OS 8604 0.6472 (1829/2826) 0 * Os_TE_313465 Os_TE_313462 Chr5 21713938 21713939 + ORSiTERTOOT00296 5553 0.0103 (31/2996) 0 * Os_TE_313461 Os_TE_313461 Chr5 21713934 21713933 - SC-3_LTR 5748 0.0103 (31/2997) 0 * Os_TE_313462 Os_TE_313455 Chr5 21712342 21712341 + INDITTO 263 0.0037 (11/2981) 0 * * Os_TE_313454 Chr5 21711424 21711425 + RIREX_LTR 8828 0.0010 (3/2996) 0 * Os_TE_313453 Os_TE_313453 Chr5 21711420 21711419 - RIREX_LTR 8828 0.0010 (3/2994) 0 * Os_TE_313454 Os_TE_313452 Chr5 21710928 21710927 + ORSiTERTOOT00074 4935 0.0003 (1/2994) 0 * Os_TE_313451 Os_TE_313451 Chr5 21710909 21710910 - ORSiTERTOOT00138 2740 0.0003 (1/2993) 0 * Os_TE_313452 Os_TE_313443 Chr5 21707415 21707416 + STOWAWAY51_OS 246 0.0003 (1/2978) 0 * * Os_TE_313434 Chr5 21702220 21702221 + COPIA2-LTR_OS 6433 0.0274 (82/2994) 0 * Os_TE_313433 Os_TE_313433 Chr5 21702216 21702215 - COPIA2-LTR_OS 6433 0.0273 (82/2999) 0 * Os_TE_313434 Os_TE_313425 Chr5 21700602 21700603 + ORSiTERTOOT00226 792 0.0013 (4/2997) 0 * * Os_TE_313418 Chr5 21697993 21697994 + MuDR3_OS 8604 0.0017 (5/2968) 0 * Os_TE_313417 Os_TE_313417 Chr5 21697985 21697984 - MuDR3_OS 8604 0.0013 (4/2964) 0 * Os_TE_313418 Os_TE_313415 Chr5 21694242 21694243 - CRM-LTR_OS 7749 0.0003 (1/2992) 0 * * Os_TE_313414 Chr5 21691385 21691386 + ORSgTETNOOT01834 251 0.0017 (5/2956) 0 * * Os_TE_313413 Chr5 21691125 21691126 + ORSgTETNOOT01998 254 0.0017 (5/2993) 0 * Os_TE_313412 Os_TE_313412 Chr5 21691123 21691122 + ORSgTETNOOT01834 251 0.0017 (5/2944) 0 * Os_TE_313413 Os_TE_313371 Chr5 21682276 21682275 - RETRO2_LTR 12874 0.0003 (1/2871) 0 * * Os_TE_313334 Chr5 21677439 21677438 - INDITTO 263 0.5838 (1745/2989) 0 * * Os_TE_313318 Chr5 21674988 21674989 + MPING 430 0.0013 (4/2993) 0 * Os_TE_313317 Os_TE_313317 Chr5 21674986 21674985 - MPING 430 0.0013 (4/2991) 0 * Os_TE_313318 Os_TE_313261 Chr5 21646422 21646423 - ORSgTETN00200001 10994 0.0020 (6/2992) 0 * Os_TE_313260 Os_TE_313260 Chr5 21646420 21646419 + SPMLIKE 10989 0.0020 (6/2985) 0 * Os_TE_313261 Os_TE_313236 Chr5 21639789 21639788 - ORSgTEMT02400246 177 0.5070 (1418/2797) 0 * * Os_TE_313217 Chr5 21637124 21637125 + TELIA 141 0.0004 (1/2857) 0 * * Os_TE_313145 Chr5 21610658 21610659 - INDITTO 263 0.0003 (1/2975) 0 * Os_TE_313144 Os_TE_313144 Chr5 21610656 21610655 + INDITTO 263 0.0003 (1/2956) 0 * Os_TE_313145 Os_TE_313138 Chr5 21606572 21606571 - INDITTO 263 0.0003 (1/2998) 0 * * Os_TE_313135 Chr5 21606251 21605891 + ORSgTEMT00600272 361 0.3343 (999/2988) 1 Intact Os_TE_313133 Os_TE_313133 Chr5 21605891 21606251 + ORSgTEMT00600376 329 0.3291 (976/2966) 1 Intact Os_TE_313135 Os_TE_313124 Chr5 21604220 21604221 + RETROSAT4_LTR 13504 0.0014 (4/2942) 0 * * Os_TE_313121 Chr5 21603084 21603083 + COPIA2-LTR_OS 6433 0.0010 (3/2997) 0 * * Os_TE_313119 Chr5 21602524 21602525 + RIREX_LTR 8828 0.0003 (1/2993) 0 * Os_TE_313118 Os_TE_313118 Chr5 21602520 21602519 - RIREX_LTR 8828 0.0003 (1/2995) 0 * Os_TE_313119 Os_TE_313067 Chr5 21585347 21585348 + ORSgTETNOOT00221 261 0.0191 (56/2939) 0 * * Os_TE_313065 Chr5 21585156 21585157 + RIREX_LTR 8828 0.0003 (1/2984) 0 * Os_TE_313064 Os_TE_313064 Chr5 21585152 21585151 - RIREX_LTR 8828 0.0003 (1/2982) 0 * Os_TE_313065 Os_TE_313052 Chr5 21583967 21583968 + ORSgTEMT01601591 242 0.0003 (1/2955) 0 * * Os_TE_313050 Chr5 21583615 21583616 - MPING 430 0.0003 (1/2950) 0 * Os_TE_313049 Os_TE_313049 Chr5 21583613 21583612 + MPING 430 0.0003 (1/2936) 0 * Os_TE_313050 Os_TE_313010 Chr5 21561125 21561126 + OSTE33 1012 0.5414 (1518/2804) 0 * Os_TE_313009 Os_TE_313009 Chr5 21561117 21561116 + OSTE33 1012 0.5384 (1495/2777) 0 * Os_TE_313010 Os_TE_312980 Chr5 21554405 21554040 - CASTAWAY 364 0.3328 (984/2957) 1 Intact Os_TE_312979 Os_TE_312979 Chr5 21554040 21554404 + CASTAWAY 364 0.3343 (972/2908) 1 Intact Os_TE_312980 Os_TE_312964 Chr5 21548702 21548703 + ORSgTEMT01601591 242 0.0003 (1/2982) 0 * Os_TE_312963 Os_TE_312963 Chr5 21548701 21548700 + ORSgTEMT01601591 242 0.0003 (1/2985) 0 * Os_TE_312964 Os_TE_312962 Chr5 21548567 21531497 + RETROSAT4_LTR 13504 0.3349 (999/2983) 1 Intact Os_TE_312951 Os_TE_312951 Chr5 21531497 21535362 - SZ-35LTR 3853 0.3408 (1021/2996) 1 Intact Os_TE_312962 Os_TE_312899 Chr5 21497551 21497550 + STOWAWAY51_OS 246 0.0010 (3/2994) 0 * Os_TE_312898 Os_TE_312898 Chr5 21497545 21497546 - STOWAWAY51_OS 246 0.0007 (2/2995) 0 * Os_TE_312899 Os_TE_312880 Chr5 21488225 21488226 + COPIA2-LTR_OS 6433 0.0075 (22/2947) 0 * * Os_TE_312857 Chr5 21473247 21473248 - RIREX_LTR 8828 0.0198 (57/2874) 0 * Os_TE_312856 Os_TE_312856 Chr5 21473243 21473242 + RIREX_LTR 8828 0.0187 (54/2890) 0 * Os_TE_312857 Os_TE_312802 Chr5 21450841 21450842 - ORSgTETNOOT00754 253 0.1254 (357/2847) 0 * Os_TE_312801 Os_TE_312801 Chr5 21450839 21450838 + ORSgTETNOOT01998 254 0.1267 (362/2857) 0 * Os_TE_312802 Os_TE_312789 Chr5 21437275 21437276 + ORSgTEMT00901202 248 0.0007 (2/2724) -1 * * Os_TE_312750 Chr5 21420843 21420844 - ORSiTETNOOT00216 3569 0.0081 (24/2981) 0 * * Os_TE_312738 Chr5 21412754 21412755 - SC-3_LTR 5748 0.0003 (1/2980) 0 * Os_TE_312737 Os_TE_312737 Chr5 21412750 21412749 + ORSiTERTOOT00296 5553 0.0003 (1/2985) 0 * Os_TE_312738 Os_TE_312727 Chr5 21407113 21407114 - TEMPINDAS 4259 0.0003 (1/2898) 0 * * Os_TE_312725 Chr5 21404526 21404525 + ORSgTEMT01601591 242 0.0003 (1/2974) 0 * * Os_TE_312700 Chr5 21397931 21397932 + HARB-1_OS 5166 0.0003 (1/2982) 0 * Os_TE_312699 Os_TE_312699 Chr5 21397929 21397928 - HARB-1_OS 5166 0.0003 (1/2981) 0 * Os_TE_312700 Os_TE_312685 Chr5 21394557 21394556 - MPING 430 0.0003 (1/2981) 0 * * Os_TE_312674 Chr5 21391723 21391722 - SC-3_LTR 5748 0.0003 (1/2993) 0 * * Os_TE_312619 Chr5 21352929 21352930 - ORSgTETN00200001 10994 0.0081 (24/2980) 0 * Os_TE_312618 Os_TE_312618 Chr5 21352927 21352926 + SPMLIKE 10989 0.0084 (25/2980) 0 * Os_TE_312619 Os_TE_312565 Chr5 21330244 21330245 - RIREX_LTR 8828 0.0003 (1/2998) 0 * Os_TE_312564 Os_TE_312564 Chr5 21330240 21330239 + RIREX_LTR 8828 0.0003 (1/2999) 0 * Os_TE_312565 Os_TE_312561 Chr5 21328830 21328831 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_312560 Os_TE_312560 Chr5 21328826 21328825 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_312561 Os_TE_312510 Chr5 21295823 21295822 - SZ-35LTR 3853 0.0324 (97/2998) 0 * * Os_TE_312484 Chr5 21280395 21280396 - RIRE5-LTR_OS 6427 0.0083 (24/2879) 0 * * Os_TE_312473 Chr5 21270758 21270759 - ORSiTERT00200154 9386 0.0013 (4/2996) 0 * Os_TE_312472 Os_TE_312472 Chr5 21270752 21270751 + TRUNCATOR 2918 0.0017 (5/2995) 0 * Os_TE_312473 Os_TE_312470 Chr5 21269632 21269633 - ENSPM4_OS 11610 0.0084 (25/2980) 0 * * Os_TE_312461 Chr5 21263464 21263465 - SZ-35LTR 3853 0.0017 (5/2992) 0 * Os_TE_312460 Os_TE_312460 Chr5 21263460 21263459 + RETROSAT4_LTR 13504 0.0017 (5/2994) 0 * Os_TE_312461 Os_TE_312434 Chr5 21250826 21250827 + ORSgTEMT00800058 376 0.0017 (5/2958) 0 * * Os_TE_312417 Chr5 21246367 21246368 + RETROSAT4_LTR 13504 0.5643 (1623/2876) 0 * Os_TE_312416 Os_TE_312416 Chr5 21246363 21246362 - RETROSAT4_LTR 13504 0.5809 (1717/2956) 0 * Os_TE_312417 Os_TE_312415 Chr5 21245793 21245794 - ORSgTEMT00700002 381 0.0003 (1/2983) 0 * * Os_TE_312414 Chr5 21244578 21244577 - TRUNCATOR2_LTR 2904 0.0007 (2/2992) 0 * * Os_TE_312413 Chr5 21244575 21244576 + ORSgTERTOOT00009 12852 0.5744 (1714/2984) 0 * * Os_TE_312408 Chr5 21242933 21242932 + RETROSAT4_LTR 13504 0.0024 (7/2951) 0 * * Os_TE_312344 Chr5 21206056 21206057 + SZ-4_LTR 5991 0.0003 (1/2972) 0 * * Os_TE_312335 Chr5 21204908 21204909 - ORSiTERTOOT00367 5639 0.0003 (1/2984) 0 * Os_TE_312334 Os_TE_312334 Chr5 21204904 21204903 + ORSiTERTOOT00367 5639 0.0003 (1/2985) 0 * Os_TE_312335 Os_TE_312322 Chr5 21198662 21198663 + ORSiTERTOOT00367 5639 0.0033 (10/2987) 0 * Os_TE_312321 Os_TE_312321 Chr5 21198658 21198657 - ORSiTERTOOT00367 5639 0.0033 (10/2992) 0 * Os_TE_312322 Os_TE_312310 Chr5 21195548 21195547 + ORSiTERTOOT00226 792 0.0024 (7/2949) 0 * * Os_TE_312305 Chr5 21193034 21193033 + ORSgTETNOOT01531 255 0.5777 (1695/2934) 0 * * Os_TE_312191 Chr5 21123611 21123612 - SZ-22_LTR 4403 0.0003 (1/2938) 0 * Os_TE_312190 Os_TE_312190 Chr5 21123607 21123606 + ORSiTERTOOT00226 792 0.0003 (1/2977) 0 * Os_TE_312191 Os_TE_312186 Chr5 21120890 21120891 + TWIF 586 0.0003 (1/2964) 0 * * Os_TE_312130 Chr5 21101875 21101874 + ORSgTEMT01701924 152 0.0020 (6/2989) 0 * * Os_TE_312124 Chr5 21100908 21100907 - STOWAWAY45_OS 266 0.5355 (1417/2646) 0 * Os_TE_312123 Os_TE_312123 Chr5 21100905 21100906 + STOWAWAY45_OS 266 0.5885 (1733/2945) 0 * Os_TE_312124 Os_TE_312122 Chr5 21099418 21099417 + STOWAWAY45_OS 266 0.0003 (1/2975) 0 * Os_TE_312121 Os_TE_312121 Chr5 21099415 21099416 + STOWAWAY45_OS 266 0.0003 (1/2968) 0 * Os_TE_312122 Os_TE_312106 Chr5 21095863 21095864 - MPING 430 0.0010 (3/2987) 0 * Os_TE_312105 Os_TE_312105 Chr5 21095861 21095860 + MPING 430 0.0010 (3/2979) 0 * Os_TE_312106 Os_TE_312099 Chr5 21093493 21093494 - COPI2_LTR 4733 0.0010 (3/2995) 0 * Os_TE_312098 Os_TE_312098 Chr5 21093489 21093488 + COPI2_LTR 4733 0.0010 (3/3000) 0 * Os_TE_312099 Os_TE_312089 Chr5 21089663 21089662 + FOCUS 257 0.0003 (1/2993) 0 * * Os_TE_312085 Chr5 21085369 21085370 - AMYLTP 383 0.6262 (1824/2913) 0 * Os_TE_312084 Os_TE_312084 Chr5 21085362 21085361 + AMYLTP 383 0.6315 (1866/2955) 0 * Os_TE_312085 Os_TE_312077 Chr5 21080114 21080115 - MuDR3_OS 8604 0.3798 (635/1672) 0 * Os_TE_312076 Os_TE_312076 Chr5 21080105 21080104 - MuDR3_OS 8604 0.6543 (1866/2852) 0 * Os_TE_312077 Os_TE_312068 Chr5 21076376 21076377 + MPING 430 0.0003 (1/2992) 0 * Os_TE_312067 Os_TE_312067 Chr5 21076374 21076373 - MPING 430 0.0003 (1/2995) 0 * Os_TE_312068 Os_TE_312066 Chr5 21075317 21075318 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_312065 Os_TE_312065 Chr5 21075313 21075312 + COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_312066 Os_TE_312064 Chr5 21075234 21075014 - ORSgTEMT02400179 221 0.3369 (1005/2983) 1 Intact Os_TE_312059 Os_TE_312059 Chr5 21075015 21075233 - TYPEM 227 0.3413 (1020/2989) 1 Intact Os_TE_312064 Os_TE_312052 Chr5 21072099 21072100 + TELIA 141 0.0007 (2/2975) 0 * * Os_TE_312039 Chr5 21069999 21070000 - MPING 430 0.0007 (2/2971) 0 * Os_TE_312038 Os_TE_312038 Chr5 21069997 21069996 + MPING 430 0.0007 (2/2966) 0 * Os_TE_312039 Os_TE_312036 Chr5 21069843 21069842 - MPING 430 0.0007 (2/2990) 0 * * Os_TE_312035 Chr5 21069756 21069757 - MPING 430 0.0007 (2/2977) 0 * Os_TE_312034 Os_TE_312034 Chr5 21069754 21069753 + MPING 430 0.0007 (2/2981) 0 * Os_TE_312035 Os_TE_312033 Chr5 21069425 21069426 + COPI2_LTR 4733 0.0003 (1/2986) 0 * Os_TE_312032 Os_TE_312032 Chr5 21069421 21069420 - COPI2_LTR 4733 0.0003 (1/2987) 0 * Os_TE_312033 Os_TE_311998 Chr5 21060004 21060005 - DITAILA 257 0.6823 (2034/2981) 0 * * Os_TE_311966 Chr5 21044285 21044284 + ORSgTEMT01601049 237 0.0013 (4/2995) 0 * Os_TE_311965 Os_TE_311965 Chr5 21044282 21044283 - ORSgTEMT01602413 239 0.0017 (5/2997) 0 * Os_TE_311966 Os_TE_311915 Chr5 21018880 21018881 + ORSiTERTOOT00226 792 0.0003 (1/2995) 0 * Os_TE_311914 Os_TE_311914 Chr5 21018876 21018875 - SZ-22_LTR 4403 0.0007 (2/2992) 0 * Os_TE_311915 Os_TE_311865 Chr5 21009901 21009902 - MPING 430 0.0003 (1/2986) 0 * Os_TE_311864 Os_TE_311864 Chr5 21009899 21009898 + MPING 430 0.0003 (1/2983) 0 * Os_TE_311865 Os_TE_311844 Chr5 21003466 21003465 - SZ-35LTR 3853 0.6735 (2013/2989) 0 * * Os_TE_311840 Chr5 21003006 21003007 + ORSgTETNOOT01219 231 0.6748 (1986/2943) 0 * Os_TE_311839 Os_TE_311839 Chr5 21002999 21002998 + ORSgTETNOOT00908 242 0.6782 (1998/2946) 0 * Os_TE_311840 Os_TE_311832 Chr5 20999483 20999484 + RIREX_LTR 8828 0.0020 (6/2981) 0 * * Os_TE_311748 Chr5 20964951 20964950 - RIREX_LTR 8828 0.0007 (2/2957) 0 * * Os_TE_311698 Chr5 20935550 20935551 + COPIA2-LTR_OS 6433 0.0020 (6/2976) 0 * Os_TE_311697 Os_TE_311697 Chr5 20935546 20935545 - COPIA2-LTR_OS 6433 0.0020 (6/2956) 0 * Os_TE_311698 Os_TE_311689 Chr5 20931441 20931440 + ORSgTEMT01601591 242 0.0003 (1/2994) 0 * * Os_TE_311638 Chr5 20918713 20918712 - STOWAWAY51_OS 246 0.0003 (1/2988) 0 * Os_TE_311637 Os_TE_311637 Chr5 20918707 20918708 + STOWAWAY51_OS 246 0.0003 (1/2921) 0 * Os_TE_311638 Os_TE_311607 Chr5 20912253 20912254 - COPI2_LTR 4733 0.0007 (2/2972) 0 * Os_TE_311606 Os_TE_311606 Chr5 20912249 20912248 + COPI2_LTR 4733 0.0007 (2/2972) 0 * Os_TE_311607 Os_TE_311595 Chr5 20904181 20904182 + TELIA 141 0.0014 (4/2907) 0 * * Os_TE_311590 Chr5 20903527 20903528 + COPIA2-LTR_OS 6433 0.0003 (1/2859) 0 * Os_TE_311589 Os_TE_311589 Chr5 20903523 20903522 - COPIA2-LTR_OS 6433 0.0007 (2/2861) 0 * Os_TE_311590 Os_TE_311584 Chr5 20898334 20898335 - MPING 430 0.0003 (1/2996) 0 * Os_TE_311583 Os_TE_311583 Chr5 20898332 20898331 + MPING 430 0.0003 (1/2997) 0 * Os_TE_311584 Os_TE_311572 Chr5 20895662 20895663 + COPIA2-LTR_OS 6433 0.0007 (2/2995) 0 * Os_TE_311571 Os_TE_311571 Chr5 20895658 20895657 - COPIA2-LTR_OS 6433 0.0007 (2/2994) 0 * Os_TE_311572 Os_TE_311554 Chr5 20877954 20877955 + COPI2_LTR 4733 0.0003 (1/2977) 0 * Os_TE_311553 Os_TE_311553 Chr5 20877950 20877949 - COPI2_LTR 4733 0.0003 (1/2987) 0 * Os_TE_311554 Os_TE_311507 Chr5 20847232 20847233 + TWIF 586 0.0004 (1/2564) 0 * Os_TE_311506 Os_TE_311506 Chr5 20847225 20847224 - ORSiTETNOOT00134 607 0.0004 (1/2608) 0 * Os_TE_311507 Os_TE_311499 Chr5 20845273 20845274 + OSTE18 129 0.0017 (5/2992) 0 * * Os_TE_311470 Chr5 20831084 20831083 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * * Os_TE_311448 Chr5 20824160 20824161 - STOWAWAY51_OS 246 0.0007 (2/2999) 0 * Os_TE_311447 Os_TE_311447 Chr5 20824156 20824155 + STOWAWAY51_OS 246 0.0007 (2/2999) 0 * Os_TE_311448 Os_TE_311443 Chr5 20822614 20822615 + HARB-1_OS 5166 0.0003 (1/2981) 0 * Os_TE_311442 Os_TE_311442 Chr5 20822612 20822611 - HARB-1_OS 5166 0.0003 (1/2984) 0 * Os_TE_311443 Os_TE_311436 Chr5 20820793 20820794 + ORSiTERTOOT00226 792 0.0003 (1/2930) 0 * Os_TE_311435 Os_TE_311435 Chr5 20820789 20820788 - SZ-22_LTR 4403 0.0003 (1/2931) 0 * Os_TE_311436 Os_TE_311391 Chr5 20800383 20800384 + RIRE3_LTR 12054 0.0007 (2/2991) 0 * Os_TE_311390 Os_TE_311390 Chr5 20800379 20800378 - RIRE3_LTR 12054 0.0007 (2/2991) 0 * Os_TE_311391 Os_TE_311331 Chr5 20785232 20785233 - SZ-67LTR 1540 0.6670 (1999/2997) 0 * * Os_TE_311322 Chr5 20782963 20782964 - COPI2_LTR 4733 0.0007 (2/2995) 0 * Os_TE_311321 Os_TE_311321 Chr5 20782959 20782958 + COPI2_LTR 4733 0.0007 (2/2992) 0 * Os_TE_311322 Os_TE_311290 Chr5 20765687 20765688 + RIREX_LTR 8828 0.0003 (1/2983) 0 * * Os_TE_311255 Chr5 20737715 20737716 + ORSgTETNOOT00908 242 0.0003 (1/2954) 0 * * Os_TE_311249 Chr5 20734666 20734665 - SC-3_LTR 5748 0.6846 (2047/2990) 0 * * Os_TE_311248 Chr5 20734664 20734665 + SC-3_LTR 5748 0.6836 (2046/2993) 0 * Os_TE_311247 Os_TE_311247 Chr5 20734660 20734659 - SC-3_LTR 5748 0.6844 (2047/2991) 0 * Os_TE_311248 Os_TE_311243 Chr5 20730925 20730926 + SZ-43LTR 4039 0.0006 (1/1599) 0 * * Os_TE_311173 Chr5 20702534 20702535 - STOWAWAY46_OS 154 0.0003 (1/2977) 0 * * Os_TE_311152 Chr5 20697278 20697279 - ORSgTETN00200001 10994 0.0003 (1/2981) 0 * Os_TE_311151 Os_TE_311151 Chr5 20697276 20697275 + SPMLIKE 10989 0.0003 (1/2984) 0 * Os_TE_311152 Os_TE_311140 Chr5 20693634 20693633 - ORSgTEMT00502287 149 0.0008 (2/2517) 0 * * Os_TE_311122 Chr5 20687649 20687650 - ORSiTERTOOT00074 4935 0.0003 (1/2956) 0 * Os_TE_311121 Os_TE_311121 Chr5 20687645 20687644 + ORSiTERTOOT00074 4935 0.0003 (1/2963) 0 * Os_TE_311122 Os_TE_311092 Chr5 20676453 20676454 - SZ-40LTR 2465 0.0010 (3/2985) 0 * Os_TE_311091 Os_TE_311091 Chr5 20676449 20676448 + SZ-40LTR 2465 0.0010 (3/2985) 0 * Os_TE_311092 Os_TE_311087 Chr5 20673379 20673380 + ORSiTERTOOT00226 792 0.0017 (5/2992) 0 * Os_TE_311086 Os_TE_311086 Chr5 20673375 20673374 - SZ-22_LTR 4403 0.0017 (5/2988) 0 * Os_TE_311087 Os_TE_311080 Chr5 20671522 20671521 + ORSgTETNOOT00908 242 0.0003 (1/2939) 0 * * Os_TE_311030 Chr5 20646817 20646818 - SC-8_LTR 4951 0.0007 (2/2983) 0 * Os_TE_311029 Os_TE_311029 Chr5 20646813 20646812 + SC-8_LTR 4951 0.0007 (2/2986) 0 * Os_TE_311030 Os_TE_311024 Chr5 20644342 20640940 + TRUNCATOR2_LTR 2904 0.2662 (791/2971) 1 Intact Os_TE_311018 Os_TE_311018 Chr5 20640940 20644342 - TRUNCATOR2_LTR 2904 0.2721 (814/2992) 1 Intact Os_TE_311024 Os_TE_310989 Chr5 20633998 20633999 - INDITTO 263 0.0011 (3/2794) 0 * * Os_TE_310985 Chr5 20631831 20631832 + TWIF 586 0.0003 (1/2984) 0 * Os_TE_310984 Os_TE_310984 Chr5 20631824 20631823 - ORSiTETNOOT00134 607 0.0003 (1/2983) 0 * Os_TE_310985 Os_TE_310947 Chr5 20611939 20611940 - RIREX_LTR 8828 0.0003 (1/2978) 0 * * Os_TE_310925 Chr5 20606111 20606112 + DASIA-2 1198 0.0735 (219/2981) 0 * * Os_TE_310902 Chr5 20601851 20601850 - RIREX_LTR 8828 0.0003 (1/2897) 0 * * Os_TE_310868 Chr5 20590128 20590127 - STOWAWAY51_OS 246 0.0003 (1/2997) 0 * * Os_TE_310851 Chr5 20583136 20583137 - INDITTO 263 0.0020 (6/2990) 0 * Os_TE_310850 Os_TE_310850 Chr5 20583134 20583133 + INDITTO 263 0.0020 (6/2988) 0 * Os_TE_310851 Os_TE_310802 Chr5 20564175 20564174 + STOWAWAY51_OS 246 0.0003 (1/2977) 0 * * Os_TE_310796 Chr5 20561122 20561123 + MPING 430 0.0007 (2/2887) 0 * Os_TE_310795 Os_TE_310795 Chr5 20561120 20561119 - MPING 430 0.0007 (2/2902) 0 * Os_TE_310796 Os_TE_310780 Chr5 20557322 20557323 - RIREX_LTR 8828 0.0007 (2/2989) 0 * Os_TE_310779 Os_TE_310779 Chr5 20557318 20557317 + RIREX_LTR 8828 0.0007 (2/2985) 0 * Os_TE_310780 Os_TE_310767 Chr5 20554547 20554546 + ORSgTEMT00600272 361 0.0007 (2/2857) 0 * * Os_TE_310754 Chr5 20545475 20545476 + ORSiTERTOOT00296 5553 0.0003 (1/2995) 0 * Os_TE_310753 Os_TE_310753 Chr5 20545471 20545470 - SC-3_LTR 5748 0.0003 (1/2996) 0 * Os_TE_310754 Os_TE_310738 Chr5 20540320 20540321 - ORSgTEMT02400246 177 0.0739 (220/2976) 0 * * Os_TE_310683 Chr5 20520418 20520417 - ORSgTEMT01600639 228 0.0013 (4/2975) 0 * Os_TE_310682 Os_TE_310682 Chr5 20520415 20520416 + ORSgTEMT01600283 240 0.0013 (4/2964) 0 * Os_TE_310683 Os_TE_310671 Chr5 20514812 20514813 + COPIA2-LTR_OS 6433 0.0007 (2/2947) 0 * Os_TE_310670 Os_TE_310670 Chr5 20514808 20514807 - COPIA2-LTR_OS 6433 0.0007 (2/2951) 0 * Os_TE_310671 Os_TE_310662 Chr5 20512739 20512740 + COPI2_LTR 4733 0.0004 (1/2700) 0 * * Os_TE_310621 Chr5 20498301 20498302 + COPIA2-LTR_OS 6433 0.0020 (6/2992) 0 * Os_TE_310620 Os_TE_310620 Chr5 20498297 20498296 - COPIA2-LTR_OS 6433 0.0020 (6/2992) 0 * Os_TE_310621 Os_TE_310619 Chr5 20498053 20498054 - SZ-22_LTR 4403 0.0003 (1/2988) 0 * Os_TE_310618 Os_TE_310618 Chr5 20498049 20498048 + ORSiTERTOOT00226 792 0.0004 (1/2830) 0 * Os_TE_310619 Os_TE_310594 Chr5 20491406 20491407 - RETRO1_LTR 8314 0.0194 (58/2994) 0 * * Os_TE_310589 Chr5 20490242 20490243 + TELIA 141 0.0003 (1/2964) 0 * * Os_TE_310574 Chr5 20476250 20476251 - BAJIELTR 4500 0.0017 (5/2982) 0 * Os_TE_310573 Os_TE_310573 Chr5 20476246 20476245 + BAJIELTR 4500 0.0013 (4/2983) 0 * Os_TE_310574 Os_TE_310553 Chr5 20471810 20471811 - COPIA2-LTR_OS 6433 0.0131 (39/2977) 0 * Os_TE_310552 Os_TE_310552 Chr5 20471806 20471805 + COPIA2-LTR_OS 6433 0.0124 (37/2984) 0 * Os_TE_310553 Os_TE_310540 Chr5 20465629 20465630 + SZ-59_LTR 5600 0.0007 (2/2991) 0 * Os_TE_310539 Os_TE_310539 Chr5 20465625 20465624 - SZ-59_LTR 5600 0.0007 (2/2991) 0 * Os_TE_310540 Os_TE_310538 Chr5 20465523 20465524 + SC-1_LTR 6888 0.5757 (1726/2998) 0 * Os_TE_310537 Os_TE_310537 Chr5 20465519 20465518 - SC-1_LTR 6888 0.5699 (1705/2992) 0 * Os_TE_310538 Os_TE_310501 Chr5 20447578 20447577 + ORSiTERTOOT00226 792 0.0003 (1/2974) 0 * * Os_TE_310492 Chr5 20442693 20442692 + ORSgTETNOOT01834 251 0.0007 (2/2972) 0 * * Os_TE_310468 Chr5 20433062 20433063 + MPING 430 0.0003 (1/2973) 0 * * Os_TE_310464 Chr5 20431620 20431619 + ORSiTERT00200145 12238 0.0032 (9/2849) 0 * * Os_TE_310448 Chr5 20425752 20425753 + SZ-COM 1308 0.0003 (1/2990) 0 * * Os_TE_310437 Chr5 20419720 20419721 - MPING 430 0.0030 (9/2966) 0 * Os_TE_310436 Os_TE_310436 Chr5 20419718 20419717 + MPING 430 0.0030 (9/2962) 0 * Os_TE_310437 Os_TE_310435 Chr5 20419575 20419576 + MPING 430 0.0003 (1/2986) 0 * Os_TE_310434 Os_TE_310434 Chr5 20419573 20419572 - MPING 430 0.0003 (1/2978) 0 * Os_TE_310435 Os_TE_310349 Chr5 20395148 20395149 - TRUNCATOR2_LTR 2904 0.0003 (1/2950) 0 * * Os_TE_310348 Chr5 20394264 20394265 - COPIA2-LTR_OS 6433 0.0003 (1/2960) 0 * Os_TE_310347 Os_TE_310347 Chr5 20394260 20394259 + COPIA2-LTR_OS 6433 0.0003 (1/2950) 0 * Os_TE_310348 Os_TE_310343 Chr5 20392285 20392286 + COPI2_LTR 4733 0.0007 (2/2968) 0 * * Os_TE_310335 Chr5 20386973 20386972 + TRUNCATOR 2918 0.7465 (2235/2994) 0 * * Os_TE_310321 Chr5 20375813 20375551 + INDITTO 263 0.1849 (548/2963) 1 Intact Os_TE_310320 Os_TE_310320 Chr5 20375551 20375813 - INDITTO 263 0.1854 (551/2972) 1 Intact Os_TE_310321 Os_TE_310317 Chr5 20375312 20375311 - ORSgTEMT00600304 361 0.0812 (224/2758) 0 * * Os_TE_310310 Chr5 20371716 20374474 + RETROSAT4_LTR 13504 0.1839 (542/2947) 1 Intact * Os_TE_310300 Chr5 20369415 20369416 - TRUNCATOR2_LTR 2904 0.0007 (2/2971) 0 * * Os_TE_310239 Chr5 20335520 20335521 - OSHOOTER 11544 0.0003 (1/2993) 0 * * Os_TE_310231 Chr5 20332575 20332576 - RETROSAT4_LTR 13504 0.8214 (2446/2978) 0 * Os_TE_310230 Os_TE_310230 Chr5 20332571 20332570 + RETROSAT4_LTR 13504 0.8173 (2402/2939) 0 * Os_TE_310231 Os_TE_310201 Chr5 20323616 20323617 - INDITTO 263 0.0023 (6/2583) 0 * Os_TE_310200 Os_TE_310200 Chr5 20323614 20323613 - ORSgTETNOOT02417 265 0.0023 (6/2625) 0 * Os_TE_310201 Os_TE_310181 Chr5 20314142 20314141 - STOWAWAY51_OS 246 0.0047 (14/2975) 0 * Os_TE_310180 Os_TE_310180 Chr5 20314136 20314137 + STOWAWAY51_OS 246 0.0047 (14/2976) 0 * Os_TE_310181 Os_TE_310166 Chr5 20302001 20302002 + MPING 430 0.0007 (2/2950) 0 * Os_TE_310165 Os_TE_310165 Chr5 20301999 20301998 - MPING 430 0.0007 (2/2956) 0 * Os_TE_310166 Os_TE_310164 Chr5 20300707 20300708 - TELIA 141 0.1445 (430/2976) 0 * Os_TE_310163 Os_TE_310163 Chr5 20300699 20300698 + TELIA 141 0.1464 (436/2978) 0 * Os_TE_310164 Os_TE_310072 Chr5 20270110 20270111 + RIRE3_LTR 12054 0.0057 (17/2993) 0 * * Os_TE_310038 Chr5 20253396 20253397 + RETRO2A_LTR 12895 0.0004 (1/2843) 0 * Os_TE_310037 Os_TE_310037 Chr5 20253392 20253391 - RETRO1_LTR 8314 0.0003 (1/2858) 0 * Os_TE_310038 Os_TE_310018 Chr5 20249257 20249258 - COPI2_LTR 4733 0.0007 (2/2986) 0 * Os_TE_310017 Os_TE_310017 Chr5 20249253 20249252 + COPI2_LTR 4733 0.0007 (2/2985) 0 * Os_TE_310018 Os_TE_310009 Chr5 20243402 20243403 + INDITTO 263 0.8481 (2389/2817) 0 * Os_TE_310008 Os_TE_310008 Chr5 20243400 20243399 - INDITTO 263 0.8550 (2412/2821) 0 * Os_TE_310009 Os_TE_310004 Chr5 20241865 20241866 - ORSgTERT00200063 5773 0.0003 (1/2963) 0 * * Os_TE_309988 Chr5 20239172 20239173 + COPIA2-LTR_OS 6433 0.0003 (1/2978) 0 * * Os_TE_309973 Chr5 20233587 20233588 + RETROSAT2LTR 12796 0.0732 (190/2597) 0 * * Os_TE_309953 Chr5 20222420 20214041 - RIREX_LTR 8828 0.1817 (543/2989) 1 Intact Os_TE_309951 Os_TE_309951 Chr5 20214041 20222420 + RIREX_LTR 8828 0.1823 (545/2989) 1 Intact Os_TE_309953 Os_TE_309948 Chr5 20211565 20211566 + ORSiTERTOOT00296 5553 0.0107 (32/2995) 0 * Os_TE_309947 Os_TE_309947 Chr5 20211561 20211560 - SC-3_LTR 5748 0.0107 (32/2992) 0 * Os_TE_309948 Os_TE_309939 Chr5 20209466 20209467 + STOWAWAY51_OS 246 0.0003 (1/2954) 0 * * Os_TE_309930 Chr5 20205968 20205818 + ORSgTEMT00501267 147 0.8575 (2563/2989) 1 Intact * Os_TE_309909 Chr5 20194027 20194028 - MPING 430 0.0003 (1/2979) 0 * Os_TE_309908 Os_TE_309908 Chr5 20194025 20194024 + MPING 430 0.0003 (1/2986) 0 * Os_TE_309909 Os_TE_309894 Chr5 20189900 20189901 + SPMLIKE 10989 0.1408 (419/2975) 0 * Os_TE_309893 Os_TE_309893 Chr5 20189898 20189897 - ORSgTETN00200001 10994 0.1489 (446/2996) 0 * Os_TE_309894 Os_TE_309892 Chr5 20189833 20189832 + TRUNCATOR 2918 0.0054 (16/2984) 0 * Os_TE_309891 Os_TE_309891 Chr5 20189832 20189833 - TRUNCATOR 2918 0.0050 (15/2983) 0 * Os_TE_309892 Os_TE_309870 Chr5 20177413 20177414 - MPING 430 0.0018 (1/560) 0 * * Os_TE_309865 Chr5 20175792 20175793 - RIREX_LTR 8828 0.1447 (433/2993) 0 * Os_TE_309864 Os_TE_309864 Chr5 20175788 20175787 + RIREX_LTR 8828 0.1452 (434/2990) 0 * Os_TE_309865 Os_TE_309854 Chr5 20173845 20173844 + ORSiTERTOOT00404 4839 0.0004 (1/2311) 0 * * Os_TE_309850 Chr5 20170439 20170440 - COPIA2-LTR_OS 6433 0.0007 (2/2990) 0 * Os_TE_309849 Os_TE_309849 Chr5 20170435 20170434 + COPIA2-LTR_OS 6433 0.0007 (2/2987) 0 * Os_TE_309850 Os_TE_309810 Chr5 20156278 20156277 + STOWAWAY51_OS 246 0.0047 (14/2996) 0 * * Os_TE_309809 Chr5 20156272 20156273 - STOWAWAY51_OS 246 0.0047 (14/2993) 0 * Os_TE_309808 Os_TE_309808 Chr5 20156267 20156266 + ORSgTEMT01600726 235 0.0047 (14/2996) 0 * Os_TE_309809 Os_TE_309802 Chr5 20152752 20152751 + STOWAWAY51_OS 246 0.0003 (1/2995) 0 * * Os_TE_309789 Chr5 20145359 20132665 + ORSgTERTOOT00009 12852 0.1716 (507/2954) 1 Intact Os_TE_309780 Os_TE_309780 Chr5 20132665 20145359 - RETRO2_LTR 12874 0.1853 (546/2946) 1 Intact Os_TE_309789 Os_TE_309740 Chr5 20116340 20116341 - ORSiTERTOOT00074 4935 0.0037 (11/2997) 0 * * Os_TE_309733 Chr5 20110476 20110477 + ORSiTERTOOT00381 4988 0.0693 (207/2985) 0 * Os_TE_309732 Os_TE_309732 Chr5 20110472 20110471 - SC-8_LTR 4951 0.0693 (207/2988) 0 * Os_TE_309733 Os_TE_309698 Chr5 20092105 20092106 + COPI2_LTR 4733 0.0003 (1/2987) 0 * Os_TE_309697 Os_TE_309697 Chr5 20092101 20092100 - COPI2_LTR 4733 0.0003 (1/2987) 0 * Os_TE_309698 Os_TE_309693 Chr5 20085906 20085905 - COPI2_LTR 4733 0.0003 (1/2942) 0 * * Os_TE_309690 Chr5 20084053 20084054 + F770 284 0.1443 (432/2993) 0 * * Os_TE_309649 Chr5 20072621 20071391 - SZLTR 1249 0.1828 (543/2970) 1 Intact Os_TE_309631 Os_TE_309631 Chr5 20059714 20072620 + RETRO2_LTR 12874 0.1760 (521/2960) 1 Intact Os_TE_309649 Os_TE_309613 Chr5 20052463 20052462 + SZ-67LTR 1540 0.0010 (3/2981) 0 * * Os_TE_309600 Chr5 20049661 20049662 + ORSgTEMT01601142 233 0.0020 (5/2512) 0 * * Os_TE_309573 Chr5 20039705 20039704 - HELITRON7_OS 10153 0.5996 (1728/2882) 0 * Os_TE_309572 Os_TE_309572 Chr5 20039701 20039702 + HELITRON7_OS 10153 0.6169 (1842/2986) 0 * Os_TE_309573 Os_TE_309566 Chr5 20036173 20036174 + ORSgTETNOOT01286 235 0.0176 (10/569) 0 * * Os_TE_309564 Chr5 20036165 20036405 - ORSgTETNOOT00908 242 0.1802 (537/2980) 1 Intact * Os_TE_309562 Chr5 20035800 20035801 + STOWAWAY41_OS 264 0.0018 (2/1098) 0 * * Os_TE_309553 Chr5 20033297 20033641 - BUHUI 375 0.3893 (1157/2972) 1 Intact * Os_TE_309507 Chr5 20019080 20019081 + ORSiTERTOOT00226 792 0.0027 (8/2994) 0 * Os_TE_309506 Os_TE_309506 Chr5 20019076 20019075 - SZ-22_LTR 4403 0.0027 (8/2989) 0 * Os_TE_309507 Os_TE_309482 Chr5 20014454 20014455 - SZ-22_LTR 4403 0.0003 (1/2965) 0 * * Os_TE_309457 Chr5 20007303 20007304 + COPIA2-LTR_OS 6433 0.0003 (1/2884) 0 * Os_TE_309456 Os_TE_309456 Chr5 20007299 20007298 - COPIA2-LTR_OS 6433 0.0003 (1/2897) 0 * Os_TE_309457 Os_TE_309443 Chr5 20000951 20000337 - DS-RICE2N 613 0.1838 (541/2943) 1 Intact Os_TE_309442 Os_TE_309442 Chr5 20000337 20000951 + DS-RICE2N 613 0.1770 (518/2926) 1 Intact Os_TE_309443 Os_TE_309440 Chr5 19999875 19999876 - SZ-22_LTR 4403 0.0003 (1/2984) 0 * Os_TE_309439 Os_TE_309439 Chr5 19999871 19999870 + ORSiTERTOOT00034 791 0.0003 (1/2978) 0 * Os_TE_309440 Os_TE_309421 Chr5 19990361 19990362 + SC-8_LTR 4951 0.0003 (1/2999) 0 * Os_TE_309420 Os_TE_309420 Chr5 19990357 19990356 - SC-8_LTR 4951 0.0003 (1/2996) 0 * Os_TE_309421 Os_TE_309387 Chr5 19968446 19968447 - STOWAWAY51_OS 246 0.0050 (15/2993) 0 * * Os_TE_309386 Chr5 19968028 19968234 + F770 284 0.1694 (508/2998) 1 Intact * Os_TE_309385 Chr5 19967981 19967982 - OSTE33 1012 0.0003 (1/2992) 0 * Os_TE_309384 Os_TE_309384 Chr5 19967972 19967971 - OSTE33 1012 0.0003 (1/2985) 0 * Os_TE_309385 Os_TE_309369 Chr5 19963663 19963662 - NDNA1TNA_OS 334 0.8259 (2453/2970) 0 * * Os_TE_309368 Chr5 19963470 19963471 - AMYLTP 383 0.0003 (1/2963) 0 * Os_TE_309367 Os_TE_309367 Chr5 19963462 19963461 + AMYLTP 383 0.0007 (2/2963) 0 * Os_TE_309368 Os_TE_309366 Chr5 19961161 19961162 - AMYLTP 383 0.0007 (2/2984) 0 * Os_TE_309365 Os_TE_309365 Chr5 19961153 19961152 + AMYLTP 383 0.0007 (2/2984) 0 * Os_TE_309366 Os_TE_309360 Chr5 19956560 19956561 - HARB-1_OS 5166 0.0010 (3/2995) 0 * * Os_TE_309359 Chr5 19955830 19955831 - SZ-22_LTR 4403 0.0003 (1/2995) 0 * * Os_TE_309321 Chr5 19940146 19940145 - STOWAWAY47_OS 148 0.8293 (2448/2952) 0 * * Os_TE_309297 Chr5 19925810 19925811 + ORSgTEMT00600272 361 0.1448 (431/2976) 0 * Os_TE_309296 Os_TE_309296 Chr5 19925808 19925807 - ORSgTEMT00600524 364 0.1471 (438/2978) 0 * Os_TE_309297 Os_TE_309290 Chr5 19922446 19922445 + MPING 430 0.0003 (1/2918) 0 * * Os_TE_309280 Chr5 19919994 19916565 - GYPSY-A_LTR 8951 0.1799 (536/2979) 1 Solo_LTR Os_TE_309279 Os_TE_309279 Chr5 19916565 19919994 + GYPSY-A_LTR 8951 0.1762 (523/2969) 1 Solo_LTR Os_TE_309280 Os_TE_309274 Chr5 19915975 19909552 - COPIA2-LTR_OS 6433 0.1847 (539/2918) 1 Intact Os_TE_309270 Os_TE_309270 Chr5 19909552 19915975 + COPIA2-LTR_OS 6433 0.1728 (505/2922) 1 Intact Os_TE_309274 Os_TE_309211 Chr5 19890380 19890381 - RIREX_LTR 8828 0.0003 (1/2984) 0 * Os_TE_309210 Os_TE_309210 Chr5 19890376 19890375 + RIREX_LTR 8828 0.0003 (1/2988) 0 * Os_TE_309211 Os_TE_309205 Chr5 19889461 19889462 + COPI1_LTR 4721 0.0004 (1/2727) 0 * Os_TE_309204 Os_TE_309204 Chr5 19889457 19889456 - SZ-25LTR 330 0.0004 (1/2724) 0 * Os_TE_309205 Os_TE_309154 Chr5 19872250 19872251 + TWIF 586 0.0003 (1/2996) 0 * Os_TE_309153 Os_TE_309153 Chr5 19872243 19872242 - ORSiTETNOOT00134 607 0.0003 (1/2996) 0 * Os_TE_309154 Os_TE_309144 Chr5 19867943 19860717 - RIREX_LTR 8828 0.0612 (183/2992) 1 Intact Os_TE_309141 Os_TE_309141 Chr5 19860717 19867943 + RIREX_LTR 8828 0.0614 (184/2995) 1 Intact Os_TE_309144 Os_TE_309135 Chr5 19859192 19859191 - COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * * Os_TE_309133 Chr5 19858336 19858337 + ORSiTERTOOT00226 792 0.0024 (7/2908) 0 * * Os_TE_309131 Chr5 19857907 19857906 - ORSgTEMT02400148 214 0.0003 (1/2918) 0 * Os_TE_309130 Os_TE_309130 Chr5 19857906 19857907 - TYPEM 227 0.0003 (1/2905) 0 * Os_TE_309131 Os_TE_309111 Chr5 19853748 19853747 + ORSgTETNOOT00032 218 0.0013 (3/2237) 0 * * Os_TE_309103 Chr5 19849884 19849883 + TNR2A 152 0.2032 (601/2957) 0 * * Os_TE_309100 Chr5 19848668 19848669 - DITAILA 257 0.0017 (5/2889) 0 * * Os_TE_309087 Chr5 19841865 19841866 + ORSiTERTOOT00296 5553 0.0007 (2/2967) 0 * Os_TE_309086 Os_TE_309086 Chr5 19841861 19841860 - SC-3_LTR 5748 0.0007 (2/2963) 0 * Os_TE_309087 Os_TE_309065 Chr5 19833189 19833190 - RETROSAT2LTR 12796 0.0003 (1/2985) 0 * * Os_TE_309052 Chr5 19826983 19826982 - ORSgTEMT00101174 225 0.0007 (2/2786) 0 * * Os_TE_309004 Chr5 19808720 19808721 + ORSgTETNOOT02019 240 0.0010 (3/2896) 0 * * Os_TE_308961 Chr5 19788122 19788123 + MPING 430 0.0159 (46/2898) 0 * Os_TE_308960 Os_TE_308960 Chr5 19788120 19788119 - MPING 430 0.0272 (47/1731) 0 * Os_TE_308961 Os_TE_308946 Chr5 19780923 19780924 - SC-3_LTR 5748 0.0003 (1/2989) 0 * Os_TE_308945 Os_TE_308945 Chr5 19780919 19780918 + ORSiTERTOOT00296 5553 0.0003 (1/2989) 0 * Os_TE_308946 Os_TE_308943 Chr5 19778047 19778048 + ORSiTERTOOT00034 791 0.0003 (1/2991) 0 * * Os_TE_308940 Chr5 19776321 19776322 + INDITTO 263 0.0007 (2/2984) 0 * Os_TE_308939 Os_TE_308939 Chr5 19776319 19776318 - INDITTO 263 0.0007 (2/2982) 0 * Os_TE_308940 Os_TE_308929 Chr5 19774465 19774466 - MPING 430 0.0003 (1/2994) 0 * Os_TE_308928 Os_TE_308928 Chr5 19774463 19774462 + MPING 430 0.0003 (1/2997) 0 * Os_TE_308929 Os_TE_308915 Chr5 19764479 19764480 - RETROSAT2LTRA 3112 0.0007 (2/2975) 0 * * Os_TE_308912 Chr5 19763227 19763228 + ORSgTETNOOT02019 240 0.0013 (4/2967) 0 * Os_TE_308911 Os_TE_308911 Chr5 19763225 19763224 + ORSgTETNOOT00908 242 0.0013 (4/2967) 0 * Os_TE_308912 Os_TE_308910 Chr5 19763014 19763015 + MPING 430 0.0010 (3/2886) 0 * Os_TE_308909 Os_TE_308909 Chr5 19763012 19763011 - MPING 430 0.0010 (3/2866) 0 * Os_TE_308910 Os_TE_308894 Chr5 19759114 19759115 - NDNA1TNA_OS 334 0.0010 (3/2909) 0 * Os_TE_308893 Os_TE_308893 Chr5 19759112 19759111 + NDNA1TNA_OS 334 0.0016 (4/2580) 0 * Os_TE_308894 Os_TE_308887 Chr5 19755370 19755369 - SZ-55_LTR 10318 0.0003 (1/2989) 0 * * Os_TE_308867 Chr5 19751086 19751087 + ORSgTEMT02400245 225 0.0003 (1/2982) 0 * * Os_TE_308828 Chr5 19739532 19739533 - RETRO1_LTR 8314 0.0281 (84/2994) 0 * Os_TE_308827 Os_TE_308827 Chr5 19739528 19739527 + RETRO2A_LTR 12895 0.0277 (83/2993) 0 * Os_TE_308828 Os_TE_308818 Chr5 19731955 19731954 - SZ-58LTR 114 0.0004 (1/2433) 0 * * Os_TE_308801 Chr5 19728614 19728615 + NDNA1TNA_OS 334 0.0003 (1/2993) 0 * Os_TE_308800 Os_TE_308800 Chr5 19728613 19728612 - NDNA1TNA_OS 334 0.0003 (1/2997) 0 * Os_TE_308801 Os_TE_308798 Chr5 19727281 19727282 + ORSiTERTOOT00226 792 0.0027 (8/2992) 0 * * Os_TE_308793 Chr5 19718169 19718168 - CASTAWAY 364 0.0017 (5/2997) 0 * * Os_TE_308777 Chr5 19716078 19716079 + STOWAWAY43_OS 233 0.0020 (6/2977) 0 * * Os_TE_308768 Chr5 19706437 19706438 + RETRO2_LTR 12874 0.0003 (1/2927) 0 * Os_TE_308767 Os_TE_308767 Chr5 19706433 19706432 - RETRO2_LTR 12874 0.0007 (2/2953) 0 * Os_TE_308768 Os_TE_308766 Chr5 19705373 19705374 - ORSgTEMT02000081 196 0.3338 (981/2939) 0 * Os_TE_308765 Os_TE_308765 Chr5 19705367 19705366 - ORSgTEMT02000034 224 0.3471 (1034/2979) 0 * Os_TE_308766 Os_TE_308755 Chr5 19701829 19701830 + COPI2_LTR 4733 0.0488 (145/2971) 0 * Os_TE_308754 Os_TE_308754 Chr5 19701825 19701824 - COPI2_LTR 4733 0.0498 (149/2989) 0 * Os_TE_308755 Os_TE_308750 Chr5 19699174 19699173 - Cassandra_OS-LTR 764 0.0009 (2/2115) 0 * * Os_TE_308740 Chr5 19693866 19693487 - ORSgTEMT03000007 372 0.6444 (1894/2939) 1 Intact * Os_TE_308736 Chr5 19693314 19693060 - ORSgTEMT00901723 248 0.6482 (1935/2985) 1 Intact Os_TE_308731 Os_TE_308731 Chr5 19693060 19693314 - ORSgTEMT00900099 250 0.6531 (1954/2992) 1 Intact Os_TE_308736 Os_TE_308729 Chr5 19691526 19691108 + ORSgTEMT00300069 394 0.6902 (1961/2841) 1 Intact * Os_TE_308723 Chr5 19687287 19687714 + ORSgTEMT00300069 394 0.6618 (1959/2960) 1 Intact * Os_TE_308719 Chr5 19681773 19681774 - RMU3_OS 1117 0.3689 (1099/2979) 0 * Os_TE_308718 Os_TE_308718 Chr5 19681765 19681764 + RMU1A23 4144 0.3146 (878/2791) 0 * Os_TE_308719 Os_TE_308711 Chr5 19677851 19666480 + ORSiTERTOOT00291 11421 0.1585 (451/2846) 1 Intact Os_TE_308696 Os_TE_308696 Chr5 19666480 19677851 - ORSiTERTOOT00291 11421 0.1638 (466/2845) 1 Intact Os_TE_308711 Os_TE_308693 Chr5 19661541 19661542 + OSTE20 496 0.2323 (683/2940) 0 * * Os_TE_308687 Chr5 19659982 19659983 - CASTAWAY 364 0.8435 (2442/2895) 0 * * Os_TE_308685 Chr5 19659919 19659920 + TWIFB1 3737 0.2472 (727/2941) 0 * * Os_TE_308662 Chr5 19648347 19648346 + SETARIA2 1142 0.1976 (410/2075) 0 * * Os_TE_308634 Chr5 19643227 19643228 - ORSgTEMT02400246 177 0.0007 (2/2985) 0 * Os_TE_308633 Os_TE_308633 Chr5 19643224 19643223 - TYPEM 227 0.0007 (2/2986) 0 * Os_TE_308634 Os_TE_308617 Chr5 19639618 19639617 + COPI2_LTR 4733 0.0003 (1/2995) 0 * * Os_TE_308613 Chr5 19634094 19634095 + OSTONOR1_LTR 6440 0.0007 (2/2988) 0 * Os_TE_308612 Os_TE_308612 Chr5 19634090 19634089 - ORSiTERT00100062 5674 0.0007 (2/2989) 0 * Os_TE_308613 Os_TE_308604 Chr5 19631528 19631529 + RIREX_LTR 8828 0.0024 (3/1255) 0 * Os_TE_308603 Os_TE_308603 Chr5 19631524 19631523 - RIREX_LTR 8828 0.1856 (556/2996) 0 * Os_TE_308604 Os_TE_308595 Chr5 19627319 19625735 + SZ-37_LTR 12001 0.3961 (1176/2969) 1 Solo_LTR Os_TE_308591 Os_TE_308591 Chr5 19625735 19627319 - SZ-37_LTR 12001 0.4057 (1216/2997) 1 Solo_LTR Os_TE_308595 Os_TE_308586 Chr5 19620394 19620395 - SC-8_LTR 4951 0.0007 (2/2996) 0 * Os_TE_308585 Os_TE_308585 Chr5 19620390 19620389 + ORSiTERTOOT00381 4988 0.0007 (2/2996) 0 * Os_TE_308586 Os_TE_308576 Chr5 19612216 19612217 - SC-3_LTR 5748 0.0003 (1/2983) 0 * Os_TE_308575 Os_TE_308575 Chr5 19612212 19612211 + ORSiTERTOOT00296 5553 0.0003 (1/2990) 0 * Os_TE_308576 Os_TE_308563 Chr5 19606600 19606601 + ORSgTETNOOT00032 218 0.0004 (1/2347) 0 * * Os_TE_308562 Chr5 19606550 19594838 - MuDR3_OS 8604 0.1554 (412/2651) 1 Intact Os_TE_308556 Os_TE_308556 Chr5 19594838 19606547 - MuDR3_OS 8604 0.1334 (344/2578) 1 Intact Os_TE_308562 Os_TE_308501 Chr5 19580225 19580226 - ORSgTETN00200001 10994 0.0003 (1/2975) 0 * Os_TE_308500 Os_TE_308500 Chr5 19580223 19580222 + SPMLIKE 10989 0.0003 (1/2978) 0 * Os_TE_308501 Os_TE_308456 Chr5 19551972 19551973 - CLOUD 734 0.2368 (671/2834) 0 * Os_TE_308455 Os_TE_308455 Chr5 19551964 19551963 - CLOUD 734 0.2553 (735/2879) 0 * Os_TE_308456 Os_TE_308454 Chr5 19551533 19551532 - TRUNCATOR 2918 0.3445 (998/2897) 0 * * Os_TE_308445 Chr5 19549573 19549574 - NDNA1TNA_OS 334 0.0011 (3/2774) 0 * * Os_TE_308432 Chr5 19542204 19542205 - ORSgTEMT00600524 364 0.3653 (1093/2992) 0 * * Os_TE_308423 Chr5 19540003 19540004 - OSTE33 1012 0.3583 (1068/2981) 0 * Os_TE_308422 Os_TE_308422 Chr5 19539993 19539992 - OSTE33 1012 0.3482 (1026/2947) 0 * Os_TE_308423 Os_TE_308421 Chr5 19539766 19539767 + OSMU5 4881 0.2575 (771/2994) 0 * Os_TE_308420 Os_TE_308420 Chr5 19539762 19539761 - OSTE15 1168 0.2561 (767/2995) 0 * Os_TE_308421 Os_TE_308401 Chr5 19536633 19536634 - OSTE20 496 0.0003 (1/2969) 0 * Os_TE_308400 Os_TE_308400 Chr5 19536629 19536628 - OSTE20 496 0.0003 (1/2968) 0 * Os_TE_308401 Os_TE_308395 Chr5 19535404 19535403 + ORSiTERTOOT00074 4935 0.0003 (1/2963) 0 * * Os_TE_308388 Chr5 19524764 19524765 + ORSgTEMT00501712 146 0.0004 (1/2684) 0 * * Os_TE_308385 Chr5 19522623 19522622 + ORSiTERTOOT00028 8600 0.0307 (92/2994) 0 * * Os_TE_308322 Chr5 19486328 19486329 + ORSiTERTOOT00296 5553 0.0003 (1/2979) 0 * Os_TE_308321 Os_TE_308321 Chr5 19486324 19486323 - SC-3_LTR 5748 0.0003 (1/2969) 0 * Os_TE_308322 Os_TE_308311 Chr5 19481482 19481483 - COPIA2-LTR_OS 6433 0.0013 (4/2968) 0 * * Os_TE_308308 Chr5 19478741 19478517 + ORSgTEMT01601630 233 0.1656 (457/2760) 1 Intact * Os_TE_308299 Chr5 19474793 19474988 - ORSgTEMT00500512 153 0.1598 (468/2929) 1 Intact * Os_TE_308286 Chr5 19470539 19470824 + STOWAWAY41_OS 264 0.1676 (467/2786) 1 Intact * Os_TE_308285 Chr5 19469691 19469692 - MPING 430 0.0070 (21/2983) 0 * Os_TE_308284 Os_TE_308284 Chr5 19469689 19469688 + MPING 430 0.0071 (21/2975) 0 * Os_TE_308285 Os_TE_308271 Chr5 19467823 19467824 - SZ-9LTR 965 0.0011 (3/2738) 0 * * Os_TE_308269 Chr5 19467588 19467587 + ORSgTEMT01701016 130 0.0013 (4/2992) 0 * Os_TE_308268 Os_TE_308268 Chr5 19467587 19467588 + STOWAWAY27_OS 89 0.0013 (4/2991) 0 * Os_TE_308269 Os_TE_308255 Chr5 19458697 19458698 + ORSgTETNOOT02179 137 0.0165 (8/486) 0 * * Os_TE_308224 Chr5 19447810 19448761 - DS-RICE2N 613 0.4072 (1217/2989) 1 Intact * Os_TE_308216 Chr5 19444078 19444079 + RIRE2_LTR 11306 0.3078 (921/2992) 0 * Os_TE_308215 Os_TE_308215 Chr5 19444074 19444073 - RIRE2_LTR 11306 0.3057 (914/2990) 0 * Os_TE_308216 Os_TE_308211 Chr5 19442552 19442553 - SZ-22_LTR 4403 0.0007 (2/2985) 0 * Os_TE_308210 Os_TE_308210 Chr5 19442548 19442547 + ORSiTERTOOT00226 792 0.0007 (2/2987) 0 * Os_TE_308211 Os_TE_308209 Chr5 19442375 19442376 - RETROSAT2LTR 12796 0.0003 (1/2996) 0 * * Os_TE_308204 Chr5 19440819 19440818 + ORSgTEMT00502327 143 0.4465 (1318/2952) 0 * * Os_TE_308195 Chr5 19440072 19440073 - INDITTO 263 0.0050 (15/2996) 0 * Os_TE_308194 Os_TE_308194 Chr5 19440070 19440069 + INDITTO 263 0.0050 (15/2991) 0 * Os_TE_308195 Os_TE_308187 Chr5 19436662 19436661 + STOWAWAY51_OS 246 0.0003 (1/2981) 0 * Os_TE_308186 Os_TE_308186 Chr5 19436656 19436657 + ORSgTEMT01601591 242 0.0004 (1/2817) 0 * Os_TE_308187 Os_TE_308184 Chr5 19434324 19434325 - RIREX_LTR 8828 0.0020 (6/2993) 0 * Os_TE_308183 Os_TE_308183 Chr5 19434320 19434319 + RIREX_LTR 8828 0.0020 (6/2987) 0 * Os_TE_308184 Os_TE_308179 Chr5 19429927 19429928 + ORSgTEMT01900005 333 0.7537 (2179/2891) 0 * * Os_TE_308177 Chr5 19429687 19429686 + OLO24 345 0.6695 (1993/2977) 0 * * Os_TE_308171 Chr5 19427755 19427754 + ORSgTEMT00501601 153 0.7655 (2269/2964) 0 * * Os_TE_308162 Chr5 19416083 19416217 - ORSgTEMT01700029 143 0.2378 (702/2952) 1 Intact * Os_TE_308155 Chr5 19412758 19412757 - RPO_OS 1983 0.7577 (2239/2955) 0 * * Os_TE_308140 Chr5 19407822 19407502 + ORSgTEMT01700549 156 0.2552 (720/2821) 1 Intact Os_TE_308139 Os_TE_308139 Chr5 19407502 19407820 - ORSgTEMT01701483 220 0.3225 (627/1944) -1 Intact Os_TE_308140 Os_TE_308138 Chr5 19407465 19407466 - STOWAWAY11_OS 292 0.0037 (6/1632) -1 * * Os_TE_308131 Chr5 19407041 19407042 - ORSgTEMT01700216 124 0.7560 (2160/2857) 0 * * Os_TE_308123 Chr5 19403822 19403823 - COPIA2-LTR_OS 6433 0.0003 (1/2958) 0 * * Os_TE_308122 Chr5 19403666 19403665 + ORSgTEMT00900533 246 0.0010 (3/2987) 0 * Os_TE_308121 Os_TE_308121 Chr5 19403650 19403651 + ORSgTEMT00901798 232 0.0010 (3/2984) 0 * Os_TE_308122 Os_TE_308120 Chr5 19402274 19402275 + ORSgTETNOOT00323 125 0.0010 (3/2986) 0 * * Os_TE_308045 Chr5 19384863 19384864 - ORSgTETNOOT01607 258 0.0007 (2/2986) 0 * Os_TE_308044 Os_TE_308044 Chr5 19384862 19384861 + ORSgTETNOOT00792 273 0.0007 (2/2978) 0 * Os_TE_308045 Os_TE_308013 Chr5 19366894 19366893 - DS-RICE2N 613 0.0007 (2/2946) 0 * * Os_TE_308005 Chr5 19358741 19358742 + ORSgTERTOOT00009 12852 0.0820 (237/2892) 0 * Os_TE_308004 Os_TE_308004 Chr5 19358737 19358736 - RETRO2_LTR 12874 0.0795 (229/2880) 0 * Os_TE_308005 Os_TE_307990 Chr5 19353977 19353978 + MPING 430 0.0003 (1/2957) 0 * Os_TE_307989 Os_TE_307989 Chr5 19353975 19353974 - MPING 430 0.0003 (1/2963) 0 * Os_TE_307990 Os_TE_307964 Chr5 19337191 19337190 + ORSiTERTOOT00226 792 0.0007 (2/2995) 0 * * Os_TE_307949 Chr5 19332265 19332266 - RIREX_LTR 8828 0.0014 (4/2916) 0 * Os_TE_307948 Os_TE_307948 Chr5 19332261 19332260 + RIREX_LTR 8828 0.0010 (3/2915) 0 * Os_TE_307949 Os_TE_307946 Chr5 19329902 19329901 - ORSgTEMT01601432 239 0.0003 (1/2999) 0 * Os_TE_307945 Os_TE_307945 Chr5 19329899 19329900 - ORSgTEMT01601432 239 0.0003 (1/2997) 0 * Os_TE_307946 Os_TE_307932 Chr5 19329047 19328618 + MPING 430 0.0141 (42/2987) 1 Intact Os_TE_307931 Os_TE_307931 Chr5 19328618 19329047 - MPING 430 0.0144 (43/2984) 1 Intact Os_TE_307932 Os_TE_307914 Chr5 19321472 19321471 + ORSiOTOT00000037 220 0.2418 (719/2973) 0 * * Os_TE_307912 Chr5 19320237 19320236 - STOWAWAY51_OS 246 0.0003 (1/2966) 0 * Os_TE_307911 Os_TE_307911 Chr5 19320231 19320232 + STOWAWAY51_OS 246 0.0003 (1/2966) 0 * Os_TE_307912 Os_TE_307888 Chr5 19311388 19311389 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_307887 Os_TE_307887 Chr5 19311384 19311383 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_307888 Os_TE_307886 Chr5 19310695 19310696 - ORSgTEMT02400179 221 0.0749 (67/894) 0 * Os_TE_307885 Os_TE_307885 Chr5 19310694 19310693 - TYPEM 227 0.0224 (67/2995) 0 * Os_TE_307886 Os_TE_307878 Chr5 19309347 19309348 + TWIF 586 0.0007 (2/2994) 0 * Os_TE_307877 Os_TE_307877 Chr5 19309340 19309339 - ORSiTETNOOT00200 3563 0.0003 (1/2995) 0 * Os_TE_307878 Os_TE_307854 Chr5 19304446 19304445 + TRUNCATOR 2918 0.2554 (747/2925) 0 * * Os_TE_307852 Chr5 19303938 19303937 - TRUNCATOR 2918 0.0034 (3/886) -1 * * Os_TE_307760 Chr5 19265544 19265545 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * * Os_TE_307758 Chr5 19264692 19264691 + COPI2_LTR 4733 0.0003 (1/2886) 0 * * Os_TE_307754 Chr5 19261225 19261226 + SZ-55_LTR 10318 0.0007 (2/2988) 0 * * Os_TE_307746 Chr5 19255250 19255251 + TRUNCATOR2_LTR 2904 0.0007 (2/2989) 0 * Os_TE_307745 Os_TE_307745 Chr5 19255246 19255245 - TRUNCATOR2_LTR 2904 0.0007 (2/2993) 0 * Os_TE_307746 Os_TE_307704 Chr5 19228254 19228255 + RETROSAT4_LTR 13504 0.4736 (1373/2899) 0 * Os_TE_307703 Os_TE_307703 Chr5 19228250 19228249 - RETROSAT4_LTR 13504 0.4997 (1496/2994) 0 * Os_TE_307704 Os_TE_307662 Chr5 19209555 19209556 - COPI2_LTR 4733 0.0003 (1/2990) 0 * Os_TE_307661 Os_TE_307661 Chr5 19209551 19209550 + COPI2_LTR 4733 0.0003 (1/2989) 0 * Os_TE_307662 Os_TE_307660 Chr5 19208775 19208774 + CACTA-G1 797 0.0017 (5/2997) 0 * * Os_TE_307628 Chr5 19197324 19197325 + COPI2_LTR 4733 0.0003 (1/2983) 0 * Os_TE_307627 Os_TE_307627 Chr5 19197320 19197319 - COPI2_LTR 4733 0.0003 (1/2986) 0 * Os_TE_307628 Os_TE_307616 Chr5 19189360 19189359 - OSLINE1-2 7128 0.0007 (2/2995) 0 * * Os_TE_307447 Chr5 19123402 19123403 + ORSgTEMT00101588 319 0.0017 (5/2988) 0 * * Os_TE_307436 Chr5 19114145 19114146 - MuDR2_OS 6770 0.0321 (96/2992) 0 * Os_TE_307435 Os_TE_307435 Chr5 19114136 19114135 + MuDR2_OS 6770 0.0305 (91/2987) 0 * Os_TE_307436 Os_TE_307429 Chr5 19113513 19113512 + OSR42_LTR 5605 0.5834 (1144/1961) 0 * * Os_TE_307355 Chr5 19093542 19093543 + SZ-40LTR 2465 0.0009 (2/2149) 0 * * Os_TE_307316 Chr5 19076023 19076024 + ORSiTERTOOT00296 5553 0.0003 (1/2986) 0 * Os_TE_307315 Os_TE_307315 Chr5 19076019 19076018 - SC-3_LTR 5748 0.0003 (1/2989) 0 * Os_TE_307316 Os_TE_307314 Chr5 19075870 19075871 + ORSiTERTOOT00296 5553 0.0003 (1/2980) 0 * Os_TE_307313 Os_TE_307313 Chr5 19075866 19075865 - SC-3_LTR 5748 0.0003 (1/2984) 0 * Os_TE_307314 Os_TE_307305 Chr5 19072409 19072410 + ORSiTERTOOT00296 5553 0.0010 (3/2993) 0 * Os_TE_307304 Os_TE_307304 Chr5 19072405 19072404 - SC-3_LTR 5748 0.0010 (3/2989) 0 * Os_TE_307305 Os_TE_307268 Chr5 19049844 19049845 + ORSiTERTOOT00226 792 0.0003 (1/2992) 0 * Os_TE_307267 Os_TE_307267 Chr5 19049840 19049839 + ORSiTERTOOT00226 792 0.0003 (1/2988) 0 * Os_TE_307268 Os_TE_307250 Chr5 19046747 19046748 + ORSgTEMT00501366 147 0.7698 (2298/2985) 0 * * Os_TE_307249 Chr5 19046566 19046567 + GAIJIN 147 0.0010 (3/2984) 0 * * Os_TE_307234 Chr5 19041890 19041891 + ORSgTETNOOT01998 254 0.0020 (6/2996) 0 * Os_TE_307233 Os_TE_307233 Chr5 19041888 19041887 + ORSgTETNOOT01834 251 0.0020 (6/2992) 0 * Os_TE_307234 Os_TE_307213 Chr5 19035581 19035582 + ORSgTETNOOT01834 251 0.1095 (326/2976) 0 * Os_TE_307212 Os_TE_307212 Chr5 19035579 19035578 + ORSgTETNOOT01998 254 0.1122 (335/2986) 0 * Os_TE_307213 Os_TE_307204 Chr5 19034365 19034366 + DS-RICE4N 715 0.1030 (308/2990) 0 * Os_TE_307203 Os_TE_307203 Chr5 19034358 19034357 - DS-RICE4N 715 0.1049 (314/2993) 0 * Os_TE_307204 Os_TE_307193 Chr5 19031632 19031631 + ORSiTERTOOT00174 2237 0.0003 (1/2990) 0 * * Os_TE_307183 Chr5 19027656 19027657 + COPI2_LTR 4733 0.0003 (1/2983) 0 * * Os_TE_307178 Chr5 19025070 19025071 + INDITTO 263 0.0003 (1/2987) 0 * Os_TE_307177 Os_TE_307177 Chr5 19025068 19025067 - INDITTO 263 0.0003 (1/2990) 0 * Os_TE_307178 Os_TE_307159 Chr5 19015806 19015807 - SC-8_LTR 4951 0.0010 (3/2965) 0 * Os_TE_307158 Os_TE_307158 Chr5 19015802 19015801 + SC-8_LTR 4951 0.0010 (3/2951) 0 * Os_TE_307159 Os_TE_307146 Chr5 19009232 19009233 + RIRE2_LTR 11306 0.0003 (1/2979) 0 * Os_TE_307145 Os_TE_307145 Chr5 19009228 19009227 - RIRE2_LTR 11306 0.0003 (1/2976) 0 * Os_TE_307146 Os_TE_307144 Chr5 19008452 19008453 + RETRO2A_LTR 12895 0.3886 (1157/2977) 0 * Os_TE_307143 Os_TE_307143 Chr5 19008448 19008447 - RETRO2A_LTR 12895 0.3902 (1165/2986) 0 * Os_TE_307144 Os_TE_307141 Chr5 19008266 19008267 - ORSgTERTOOT00067 6483 0.0003 (1/2978) 0 * * Os_TE_307118 Chr5 18993698 18993699 + SC-8_LTR 4951 0.0003 (1/2990) 0 * Os_TE_307117 Os_TE_307117 Chr5 18993694 18993693 - SC-8_LTR 4951 0.0003 (1/2994) 0 * Os_TE_307118 Os_TE_307099 Chr5 18989485 18989486 - AMYLTP 383 0.1593 (429/2693) 0 * Os_TE_307098 Os_TE_307098 Chr5 18989477 18989476 + AMYLTP 383 0.1419 (375/2643) 0 * Os_TE_307099 Os_TE_307077 Chr5 18985435 18985436 + DASIA-2 1198 0.0199 (59/2960) 0 * Os_TE_307076 Os_TE_307076 Chr5 18985427 18985426 + DASIA-2 1198 0.0193 (57/2957) 0 * Os_TE_307077 Os_TE_307058 Chr5 18981657 18981656 - CLOUD 734 0.0007 (2/2845) 0 * * Os_TE_307027 Chr5 18972777 18972778 - ORSiTETNOOT00134 607 0.0004 (1/2539) 0 * * Os_TE_306977 Chr5 18950510 18950511 - RETRO2A_LTR 12895 0.0003 (1/2965) 0 * Os_TE_306976 Os_TE_306976 Chr5 18950506 18950505 + RETRO1_LTR 8314 0.0003 (1/2962) 0 * Os_TE_306977 Os_TE_306932 Chr5 18936603 18936367 + ORSgTETNOOT00908 242 0.2648 (734/2772) 1 Intact Os_TE_306930 Os_TE_306930 Chr5 18936367 18936599 + ORSgTETNOOT01219 231 0.2564 (688/2683) 1 Intact Os_TE_306932 Os_TE_306909 Chr5 18925815 18925816 - COPIA2-LTR_OS 6433 0.0007 (2/2995) 0 * * Os_TE_306876 Chr5 18914348 18914349 + RIREX_LTR 8828 0.0010 (3/2993) 0 * Os_TE_306875 Os_TE_306875 Chr5 18914344 18914343 - RIREX_LTR 8828 0.0010 (3/2989) 0 * Os_TE_306876 Os_TE_306867 Chr5 18909493 18909494 - SZ-22_LTR 4403 0.0050 (15/2976) 0 * Os_TE_306866 Os_TE_306866 Chr5 18909489 18909488 + ORSiTERTOOT00226 792 0.0050 (15/2976) 0 * Os_TE_306867 Os_TE_306858 Chr5 18904605 18904606 - F569 228 0.0003 (1/2979) 0 * Os_TE_306857 Os_TE_306857 Chr5 18904603 18904602 + F569 228 0.0003 (1/2978) 0 * Os_TE_306858 Os_TE_306830 Chr5 18889632 18889633 - RETRO2_LTR 12874 0.0013 (4/2987) 0 * Os_TE_306829 Os_TE_306829 Chr5 18889628 18889627 + RETRO2_LTR 12874 0.0013 (4/2987) 0 * Os_TE_306830 Os_TE_306819 Chr5 18886303 18886302 + ORSgTEMT00600376 329 0.0004 (1/2798) 0 * * Os_TE_306794 Chr5 18878895 18878896 - STOWAWAY51_OS 246 0.0003 (1/2976) 0 * * Os_TE_306776 Chr5 18862606 18862607 - ORSgTETNOOT00053 263 0.1189 (133/1119) 0 * Os_TE_306775 Os_TE_306775 Chr5 18862604 18862603 - INDITTO 263 0.4675 (1368/2926) 0 * Os_TE_306776 Os_TE_306774 Chr5 18862418 18862419 + INDITTO 263 0.0003 (1/2984) 0 * Os_TE_306773 Os_TE_306773 Chr5 18862416 18862415 - INDITTO 263 0.0003 (1/2986) 0 * Os_TE_306774 Os_TE_306755 Chr5 18859491 18855088 - SZ-22_LTR 4403 0.3218 (963/2993) 1 Intact Os_TE_306747 Os_TE_306747 Chr5 18855088 18855881 + ORSiTERTOOT00226 792 0.3204 (958/2990) 1 Intact Os_TE_306755 Os_TE_306734 Chr5 18852384 18852385 - RETROSAT2LTR 12796 0.0557 (166/2979) 0 * * Os_TE_306705 Chr5 18844018 18844019 - SC-3_LTR 5748 0.0652 (195/2991) 0 * Os_TE_306704 Os_TE_306704 Chr5 18844014 18844013 + ORSiTERTOOT00296 5553 0.0649 (194/2990) 0 * Os_TE_306705 Os_TE_306664 Chr5 18831168 18831169 + MDR2 6967 0.0549 (164/2986) 0 * * Os_TE_306637 Chr5 18815234 18815235 - SC-8_LTR 4951 0.0010 (3/2968) 0 * Os_TE_306636 Os_TE_306636 Chr5 18815230 18815229 + SC-8_LTR 4951 0.0010 (3/2969) 0 * Os_TE_306637 Os_TE_306613 Chr5 18805395 18805394 - TRUNCATOR 2918 0.5602 (1448/2585) 0 * * Os_TE_306610 Chr5 18805267 18805268 + RETROSAT3_LTR 11537 0.4148 (1030/2483) 0 * Os_TE_306609 Os_TE_306609 Chr5 18805263 18805262 - RETROSAT2LTRA 3112 0.4674 (1247/2668) 0 * Os_TE_306610 Os_TE_306566 Chr5 18786728 18786729 + ORSgTETNOOT01834 251 0.0007 (2/2993) 0 * * Os_TE_306560 Chr5 18780635 18780636 + ORSiTERTOOT00296 5553 0.0007 (2/2989) 0 * Os_TE_306559 Os_TE_306559 Chr5 18780631 18780630 - SC-3_LTR 5748 0.0007 (2/2991) 0 * Os_TE_306560 Os_TE_306554 Chr5 18777356 18777357 - RIREX_LTR 8828 0.0024 (7/2956) 0 * * Os_TE_306519 Chr5 18762165 18762166 - COPI2_LTR 4733 0.2663 (792/2974) 0 * Os_TE_306518 Os_TE_306518 Chr5 18762161 18762160 + COPI2_LTR 4733 0.2558 (754/2948) 0 * Os_TE_306519 Os_TE_306515 Chr5 18761544 18761543 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * * Os_TE_306507 Chr5 18752933 18752934 + ORSgTEMT02000065 196 0.0003 (1/2982) 0 * * Os_TE_306491 Chr5 18748880 18748879 + ORSiTERT00400052 469 0.0003 (1/2988) 0 * * Os_TE_306485 Chr5 18747927 18747498 + MPING 430 0.0218 (20/918) 1 Intact Os_TE_306484 Os_TE_306484 Chr5 18747498 18747927 - MPING 430 0.0064 (18/2831) 1 Intact Os_TE_306485 Os_TE_306481 Chr5 18746397 18746142 + ORSgTETNOOT01998 254 0.3247 (964/2969) 1 Intact Os_TE_306480 Os_TE_306480 Chr5 18746142 18746392 + ORSgTETNOOT01834 251 0.3195 (949/2970) 1 Intact Os_TE_306481 Os_TE_306469 Chr5 18743672 18743673 - SZ-17_LTR 3387 0.0021 (6/2809) 0 * Os_TE_306468 Os_TE_306468 Chr5 18743668 18743667 + SZ-17_LTR 3387 0.0014 (4/2831) 0 * Os_TE_306469 Os_TE_306457 Chr5 18736364 18736363 - RETROSAT2LTR 12796 0.0014 (4/2903) 0 * * Os_TE_306434 Chr5 18725166 18725167 - COPIA2-LTR_OS 6433 0.0003 (1/2966) 0 * Os_TE_306433 Os_TE_306433 Chr5 18725162 18725161 + COPIA2-LTR_OS 6433 0.0003 (1/2964) 0 * Os_TE_306434 Os_TE_306417 Chr5 18718565 18718564 - OSTE9 421 0.1915 (564/2945) 0 * * Os_TE_306401 Chr5 18714829 18714830 - MPING 430 0.0025 (6/2445) 0 * Os_TE_306400 Os_TE_306400 Chr5 18714827 18714826 + MPING 430 0.0025 (6/2443) 0 * Os_TE_306401 Os_TE_306399 Chr5 18714783 18714784 - INDITTO 263 0.0065 (16/2445) 0 * * Os_TE_306390 Chr5 18713327 18713326 - TRUNCATOR 2918 0.0075 (22/2944) 0 * Os_TE_306389 Os_TE_306389 Chr5 18713326 18713327 + TRUNCATOR 2918 0.0094 (23/2443) 0 * Os_TE_306390 Os_TE_306387 Chr5 18712617 18712618 - ORSgTETNOOT02565 240 0.1887 (566/2999) 0 * Os_TE_306386 Os_TE_306386 Chr5 18712614 18712613 + ORSgTETNOOT01642 241 0.1879 (563/2997) 0 * Os_TE_306387 Os_TE_306382 Chr5 18712234 18712372 + ORSgTEMT00500852 140 0.8292 (2481/2992) 1 Intact * Os_TE_306373 Chr5 18710159 18710158 + TWIFB1 3737 0.1726 (330/1912) 0 * * Os_TE_306331 Chr5 18701967 18701968 + NDNA1TNA_OS 334 0.0050 (15/2972) 0 * * Os_TE_306330 Chr5 18701861 18701862 + INDITTO 263 0.0003 (1/2986) 0 * Os_TE_306329 Os_TE_306329 Chr5 18701859 18701858 - INDITTO 263 0.0003 (1/2984) 0 * Os_TE_306330 Os_TE_306302 Chr5 18695568 18695569 + MPING 430 0.0004 (1/2838) 0 * Os_TE_306301 Os_TE_306301 Chr5 18695566 18695565 - MPING 430 0.0003 (1/2859) 0 * Os_TE_306302 Os_TE_306180 Chr5 18643816 18643815 + TRUNCATOR 2918 0.2994 (897/2996) 0 * Os_TE_306179 Os_TE_306179 Chr5 18643815 18643816 - TRUNCATOR 2918 0.2996 (898/2997) 0 * Os_TE_306180 Os_TE_306173 Chr5 18641165 18641164 + ORSiTERTOOT00027 10853 0.0003 (1/2996) 0 * * Os_TE_306156 Chr5 18634341 18634340 - TRUNCATOR 2918 0.2896 (859/2966) 0 * Os_TE_306155 Os_TE_306155 Chr5 18634340 18634341 + TRUNCATOR 2918 0.2882 (851/2953) 0 * Os_TE_306156 Os_TE_306147 Chr5 18628373 18628374 + MERMITE18C 1473 0.0007 (2/2803) 0 * * Os_TE_306101 Chr5 18620337 18620338 + COPI2_LTR 4733 0.0003 (1/2990) 0 * Os_TE_306100 Os_TE_306100 Chr5 18620333 18620332 - COPI2_LTR 4733 0.0003 (1/2986) 0 * Os_TE_306101 Os_TE_306094 Chr5 18617386 18617385 - STOWAWAY43_OS 233 0.1944 (578/2973) 0 * * Os_TE_306064 Chr5 18607068 18596300 - ORSiTERTOOT00291 11421 0.3475 (967/2783) 1 Intact * Os_TE_306044 Chr5 18595656 18595655 - ORSgTEMT00700002 381 0.0004 (1/2795) 0 * * Os_TE_306038 Chr5 18592337 18592338 + SC-8_LTR 4951 0.0010 (3/2990) 0 * Os_TE_306037 Os_TE_306037 Chr5 18592333 18592332 - SC-8_LTR 4951 0.0010 (3/2991) 0 * Os_TE_306038 Os_TE_306036 Chr5 18592028 18592029 - SZ-36LTR 5825 0.0003 (1/2995) 0 * * Os_TE_306011 Chr5 18573231 18573230 - RIRE2_LTR 11306 0.0003 (1/2966) 0 * * Os_TE_306010 Chr5 18573020 18573021 - ORSiTERTOOT00074 4935 0.0011 (3/2808) 0 * Os_TE_306009 Os_TE_306009 Chr5 18573016 18573015 + ORSiTERTOOT00074 4935 0.0011 (3/2807) 0 * Os_TE_306010 Os_TE_306008 Chr5 18572847 18572848 + SC-8_LTR 4951 0.2357 (662/2809) 0 * Os_TE_306007 Os_TE_306007 Chr5 18572843 18572842 - SC-8_LTR 4951 0.2356 (662/2810) 0 * Os_TE_306008 Os_TE_305995 Chr5 18569214 18569213 + ORSgTEMT00101315 319 0.0032 (9/2805) 0 * * Os_TE_305983 Chr5 18566278 18566277 - TRUNCATOR2_LTR 2904 0.0004 (1/2807) 0 * * Os_TE_305971 Chr5 18555758 18555759 - COPI2_LTR 4733 0.0025 (7/2778) 0 * Os_TE_305970 Os_TE_305970 Chr5 18555754 18555753 + COPI2_LTR 4733 0.0025 (7/2780) 0 * Os_TE_305971 Os_TE_305968 Chr5 18555240 18555241 - ORSgTEMT00101341 314 0.0078 (22/2827) 0 * * Os_TE_305958 Chr5 18553814 18553815 + MERMITEH 1307 0.0011 (3/2733) 0 * * Os_TE_305917 Chr5 18539117 18539116 + SETARIA2 1142 0.6575 (1776/2701) 0 * * Os_TE_305916 Chr5 18539077 18539078 - SETARIA 1402 0.0004 (1/2730) 0 * * Os_TE_305890 Chr5 18531744 18531745 - ORSiCMCM00100014 10855 0.0017 (1/584) -1 * * Os_TE_305858 Chr5 18518207 18518208 - COPIA2-LTR_OS 6433 0.0007 (2/2807) 0 * * Os_TE_305852 Chr5 18515240 18515241 - ORSgTETN00200001 10994 0.1638 (480/2931) 0 * Os_TE_305851 Os_TE_305851 Chr5 18515238 18515237 + SPMLIKE 10989 0.0609 (161/2642) 0 * Os_TE_305852 Os_TE_305850 Chr5 18515165 18515166 + CACTA-H 1152 0.0051 (15/2952) 0 * Os_TE_305849 Os_TE_305849 Chr5 18515163 18515162 - CACTA-H 1152 0.0058 (17/2950) 0 * Os_TE_305850 Os_TE_305847 Chr5 18515048 18515047 - ORSgTEMT01900052 340 0.0020 (6/2974) 0 * * Os_TE_305846 Chr5 18514935 18514936 + ORSgTEMT01601122 212 0.0013 (4/2979) 0 * * Os_TE_305822 Chr5 18510729 18510730 - SC-8_LTR 4951 0.0007 (2/2989) 0 * Os_TE_305821 Os_TE_305821 Chr5 18510725 18510724 + SC-8_LTR 4951 0.0007 (2/2994) 0 * Os_TE_305822 Os_TE_305811 Chr5 18507530 18507529 - TRUNCATOR2_LTR 2904 0.1394 (405/2905) 0 * * Os_TE_305803 Chr5 18503481 18503480 + ORSgTEMT01601525 239 0.0020 (6/2996) 0 * Os_TE_305802 Os_TE_305802 Chr5 18503478 18503479 - ORSgTEMT01602413 239 0.0020 (6/2993) 0 * Os_TE_305803 Os_TE_305795 Chr5 18495299 18495300 + COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_305794 Os_TE_305794 Chr5 18495295 18495294 - COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_305795 Os_TE_305787 Chr5 18492778 18492779 - RIREX_LTR 8828 0.0004 (1/2564) 0 * * Os_TE_305772 Chr5 18489497 18489496 + ORSgTEMT01601591 242 0.0003 (1/2936) 0 * Os_TE_305771 Os_TE_305771 Chr5 18489491 18489492 + STOWAWAY51_OS 246 0.0003 (1/2941) 0 * Os_TE_305772 Os_TE_305738 Chr5 18479688 18479687 - ORSgTEMT01602413 239 0.0011 (3/2710) 0 * * Os_TE_305729 Chr5 18474892 18474891 - STOWAWAY11_OS 292 0.0007 (2/2907) 0 * * Os_TE_305728 Chr5 18474866 18474867 - ORSgTEMT06000198 187 0.0003 (1/2914) 0 * * Os_TE_305703 Chr5 18466818 18466819 - SZ-55_LTR 10318 0.0003 (1/2960) 0 * Os_TE_305702 Os_TE_305702 Chr5 18466814 18466813 + SZ-55_LTR 10318 0.0003 (1/2963) 0 * Os_TE_305703 Os_TE_305701 Chr5 18466143 18466144 + ORSiTERTOOT00004 4000 0.0003 (1/2879) 0 * * Os_TE_305700 Chr5 18466071 18466072 - ORSgTERT00200342 5828 0.0004 (1/2605) 0 * * Os_TE_305691 Chr5 18462744 18462745 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * * Os_TE_305687 Chr5 18461363 18461362 - STOWAWAY51_OS 246 0.0004 (1/2719) 0 * * Os_TE_305642 Chr5 18454240 18454241 + ORSiTERT00200145 12238 0.2649 (781/2948) 0 * * Os_TE_305630 Chr5 18448581 18448582 - ORSiTERTOOT00392 5205 0.0008 (2/2479) 0 * * Os_TE_305599 Chr5 18441949 18441948 + TELIA 141 0.0003 (1/2970) 0 * * Os_TE_305584 Chr5 18438234 18438235 + MPING 430 0.0007 (2/2756) 0 * Os_TE_305583 Os_TE_305583 Chr5 18438232 18438231 - MPING 430 0.0007 (2/2748) 0 * Os_TE_305584 Os_TE_305567 Chr5 18431634 18431635 + OSTE15 1168 0.0157 (47/2990) 0 * * Os_TE_305561 Chr5 18430903 18430641 - INDITTO 263 0.4275 (1267/2964) 1 Intact Os_TE_305559 Os_TE_305559 Chr5 18430641 18430903 + ORSgTETNOOT02316 263 0.4313 (1278/2963) 1 Intact Os_TE_305561 Os_TE_305525 Chr5 18416368 18416369 - TELIA 141 0.1939 (580/2992) 0 * Os_TE_305524 Os_TE_305524 Chr5 18416360 18416359 + TELIA 141 0.1907 (568/2979) 0 * Os_TE_305525 Os_TE_305518 Chr5 18412871 18412872 - STOWAWAY51_OS 246 0.0007 (2/2857) 0 * * Os_TE_305517 Chr5 18412672 18412673 - HATOS1 3488 0.0007 (2/2952) 0 * Os_TE_305516 Os_TE_305516 Chr5 18412665 18412664 + HATOS1 3488 0.0010 (3/2952) 0 * Os_TE_305517 Os_TE_305493 Chr5 18408970 18408969 + ORSgTEMT00502327 143 0.5512 (1637/2970) 0 * * Os_TE_305488 Chr5 18408372 18408371 - ORSgTEMT00900099 250 0.5672 (1658/2923) 0 * Os_TE_305487 Os_TE_305487 Chr5 18408370 18408371 - ORSgTEMT00901345 248 0.5533 (1603/2897) 0 * Os_TE_305488 Os_TE_305486 Chr5 18408232 18408003 + ORSgTEMT01400018 210 0.4623 (1331/2879) 1 Intact * Os_TE_305479 Chr5 18404570 18404569 - ORSgTEMT00100865 348 0.5505 (1631/2963) 0 * * Os_TE_305478 Chr5 18404413 18404290 - ORSgTEMT01701195 144 0.5056 (1402/2773) 1 Intact Os_TE_305476 Os_TE_305476 Chr5 18404285 18404413 - ORSgTEMT01701366 170 0.5108 (1396/2733) 1 Intact Os_TE_305478 Os_TE_305473 Chr5 18402659 18402513 - TNR2A 152 0.7055 (1423/2017) 1 Intact * Os_TE_305467 Chr5 18398421 18398422 - RIREX_LTR 8828 0.0074 (17/2298) 0 * * Os_TE_305421 Chr5 18367396 18367397 + ORSiTEMT06300001 333 0.0005 (1/2015) 0 * * Os_TE_305405 Chr5 18360228 18366037 + ORSgTETNOOT01686 252 0.8859 (1980/2235) 1 Intact * Os_TE_305401 Chr5 18359669 18360041 - CASTAWAY 364 0.8857 (1953/2205) 1 Intact * Os_TE_305399 Chr5 18355480 18355479 - SZ-55_LTR 10318 0.0020 (4/2013) 0 * Os_TE_305398 Os_TE_305398 Chr5 18355478 18355479 + SZ-55_LTR 10318 0.0020 (4/2016) 0 * Os_TE_305399 Os_TE_305378 Chr5 18347109 18347340 + ORSgTEMT01601571 232 0.7557 (1974/2612) 1 Intact * Os_TE_305359 Chr5 18332338 18332339 + COPIA2-LTR_OS 6433 0.0007 (2/2709) 0 * Os_TE_305358 Os_TE_305358 Chr5 18332334 18332333 - COPIA2-LTR_OS 6433 0.0007 (2/2713) 0 * Os_TE_305359 Os_TE_305357 Chr5 18327322 18327321 + MuDR3_OS 8604 0.0004 (1/2697) 0 * * Os_TE_305356 Chr5 18327042 18327043 - HARB-1_OS 5166 0.0004 (1/2553) 0 * Os_TE_305355 Os_TE_305355 Chr5 18327040 18327039 + HARB-1_OS 5166 0.0004 (1/2547) 0 * Os_TE_305356 Os_TE_305349 Chr5 18326036 18326037 + ORSiTERTOOT00226 792 0.0004 (1/2720) 0 * * Os_TE_305346 Chr5 18325689 18325688 + ORSiTERTOOT00074 4935 0.0004 (1/2707) 0 * Os_TE_305345 Os_TE_305345 Chr5 18325680 18325681 - ORSiTERTOOT00138 2740 0.0004 (1/2703) 0 * Os_TE_305346 Os_TE_305331 Chr5 18322233 18322234 - SC-8_LTR 4951 0.0007 (2/2976) 0 * Os_TE_305330 Os_TE_305330 Chr5 18322229 18322228 + SC-8_LTR 4951 0.0007 (2/2974) 0 * Os_TE_305331 Os_TE_305328 Chr5 18318579 18318578 - STOWAWAY2_OS 250 0.1005 (257/2558) 0 * * Os_TE_305318 Chr5 18313077 18313078 + OSTE9 421 0.0003 (1/2896) 0 * * Os_TE_305317 Chr5 18313059 18313060 + ORSgTETNOOT00908 242 0.0003 (1/2921) 0 * * Os_TE_305312 Chr5 18312516 18312517 + TESS 244 0.0952 (265/2785) 0 * Os_TE_305311 Os_TE_305311 Chr5 18312509 18312508 - TESS 244 0.0902 (250/2773) 0 * Os_TE_305312 Os_TE_305309 Chr5 18312299 18312300 - COPIA2-LTR_OS 6433 0.0003 (1/2895) 0 * * Os_TE_305302 Chr5 18309654 18309655 - RIREX_LTR 8828 0.0007 (2/2958) 0 * Os_TE_305301 Os_TE_305301 Chr5 18309650 18309649 + RIREX_LTR 8828 0.0007 (2/2982) 0 * Os_TE_305302 Os_TE_305290 Chr5 18308935 18308934 + ORSgTEMT01900027 302 0.1044 (296/2835) 0 * Os_TE_305289 Os_TE_305289 Chr5 18308931 18308932 + ORSgTEMT01900027 302 0.1049 (297/2832) 0 * Os_TE_305290 Os_TE_305285 Chr5 18306777 18305779 + RETRO3_LTR 12751 0.1357 (311/2292) -1 Solo_LTR Os_TE_305282 Os_TE_305282 Chr5 18305779 18306777 - RETRO3_LTR 12751 0.3356 (992/2956) 1 Solo_LTR Os_TE_305285 Os_TE_305281 Chr5 18305503 18305504 - ORSgTETN00200001 10994 0.0068 (20/2959) 0 * Os_TE_305280 Os_TE_305280 Chr5 18305501 18305500 + SPMLIKE 10989 0.0077 (23/2973) 0 * Os_TE_305281 Os_TE_305263 Chr5 18297479 18297478 - COPI2_LTR 4733 0.0004 (1/2816) 0 * * Os_TE_305262 Chr5 18296941 18296942 - CACTA-P 1150 0.0013 (4/2969) 0 * Os_TE_305261 Os_TE_305261 Chr5 18296939 18296938 + CACTA-P 1150 0.0013 (4/2975) 0 * Os_TE_305262 Os_TE_305255 Chr5 18293357 18293356 - ORSgTETNOOT01337 247 0.0007 (2/2981) 0 * Os_TE_305254 Os_TE_305254 Chr5 18293355 18293356 - INDITTO 263 0.0007 (2/2976) 0 * Os_TE_305255 Os_TE_305243 Chr5 18290257 18280004 - ORSgTERT00201216 11284 0.3302 (986/2986) 1 Intact Os_TE_305233 Os_TE_305233 Chr5 18278719 18290257 - RIRE2_LTR 11306 0.3332 (996/2989) 1 Intact Os_TE_305243 Os_TE_305231 Chr5 18277888 18277887 - ORSgTEMT02400179 221 0.6097 (1815/2977) 0 * Os_TE_305230 Os_TE_305230 Chr5 18277886 18277887 + ORSgTEMT02400014 229 0.6083 (1812/2979) 0 * Os_TE_305231 Os_TE_305217 Chr5 18268739 18268740 - ORSiTERT00200154 9386 0.3717 (1097/2951) 0 * * Os_TE_305211 Chr5 18265020 18265019 + RIRE3_LTR 12054 0.0003 (1/2994) 0 * * Os_TE_305173 Chr5 18251456 18251457 - SZ-22_LTR 4403 0.0003 (1/2950) 0 * * Os_TE_305172 Chr5 18250437 18250438 + OSTONOR1_LTR 6440 0.0007 (2/2989) 0 * * Os_TE_305141 Chr5 18240488 18240487 - ORSiTERTOOT00350 5275 0.0010 (3/2935) 0 * * Os_TE_305116 Chr5 18233968 18233967 - NDNA1TNA_OS 334 0.0007 (2/2979) 0 * * Os_TE_305090 Chr5 18206938 18206939 - RETROSAT2LTR 12796 0.0004 (1/2725) 0 * * Os_TE_305089 Chr5 18206921 18206922 + TRUNCATOR 2918 0.0811 (238/2936) 0 * * Os_TE_305078 Chr5 18204077 18204078 + TRUNCATOR 2918 0.0003 (1/2944) 0 * Os_TE_305077 Os_TE_305077 Chr5 18204071 18204070 - ORSiTERT00200154 9386 0.0003 (1/2937) 0 * Os_TE_305078 Os_TE_305076 Chr5 18203724 18203725 - TRUNCATOR2_LTR 2904 0.1718 (465/2706) 0 * Os_TE_305075 Os_TE_305075 Chr5 18203720 18203719 + ORSiCMCM00100019 2717 0.1600 (418/2612) 0 * Os_TE_305076 Os_TE_305041 Chr5 18193212 18193213 - ORSiTETNOOT00134 607 0.0005 (1/2053) 0 * Os_TE_305040 Os_TE_305040 Chr5 18193205 18193204 + TWIF 586 0.0005 (1/2160) 0 * Os_TE_305041 Os_TE_305021 Chr5 18184819 18184820 - COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_305020 Os_TE_305020 Chr5 18184815 18184814 + COPIA2-LTR_OS 6433 0.0004 (1/2659) 0 * Os_TE_305021 Os_TE_304976 Chr5 18155117 18149536 - SC-3_LTR 5748 0.8165 (2438/2986) 1 Intact * Os_TE_304967 Chr5 18145710 18145711 + ORSgTEMT01601591 242 0.0003 (1/2976) 0 * * Os_TE_304942 Chr5 18135548 18135549 + AMYLTP 383 0.0426 (127/2984) 0 * * Os_TE_304929 Chr5 18120758 18120759 - RETROSAT4_LTR 13504 0.1548 (462/2985) 0 * * Os_TE_304920 Chr5 18119543 18119544 + ORSiTERTOOT00074 4935 0.0124 (37/2986) 0.06 * Os_TE_304919 Os_TE_304919 Chr5 18119539 18119538 - ORSiTERTOOT00074 4935 0.0124 (37/2987) 0 * Os_TE_304920 Os_TE_304894 Chr5 18109148 18109149 + GYPSY-B_LTR 7068 0.0003 (1/2968) 0 * * Os_TE_304890 Chr5 18108450 18108451 + MPING 430 0.0003 (1/2985) 0 * * Os_TE_304824 Chr5 18078151 18078152 - SC-3_LTR 5748 0.0003 (1/2966) 0 * Os_TE_304823 Os_TE_304823 Chr5 18078147 18078146 + ORSiTERTOOT00296 5553 0.0003 (1/2963) 0 * Os_TE_304824 Os_TE_304814 Chr5 18073097 18073096 - RETROSAT2LTR 12796 0.6452 (1860/2883) 0 * * Os_TE_304763 Chr5 18056423 18056424 - SC-3_LTR 5748 0.0013 (4/2997) 0 * Os_TE_304762 Os_TE_304762 Chr5 18056419 18056418 + ORSiTERTOOT00296 5553 0.0013 (4/2996) 0 * Os_TE_304763 Os_TE_304761 Chr5 18054666 18054667 - SC-3_LTR 5748 0.0020 (6/2987) 0 * Os_TE_304760 Os_TE_304760 Chr5 18054662 18054661 + SC-3_LTR 5748 0.0020 (6/2989) 0 * Os_TE_304761 Os_TE_304757 Chr5 18053366 18053367 - SC-8_LTR 4951 0.0007 (2/2976) 0 * Os_TE_304756 Os_TE_304756 Chr5 18053362 18053361 + SC-8_LTR 4951 0.0007 (2/2980) 0 * Os_TE_304757 Os_TE_304752 Chr5 18049963 18049962 + ORSiTERTOOT00381 4988 0.0013 (4/2992) 0 * * Os_TE_304744 Chr5 18048237 18048238 + SC-8_LTR 4951 0.0003 (1/2991) 0 * Os_TE_304743 Os_TE_304743 Chr5 18048233 18048232 - SC-8_LTR 4951 0.0003 (1/2991) 0 * Os_TE_304744 Os_TE_304738 Chr5 18043669 18043668 - ORSiTERT00200154 9386 0.0469 (137/2924) 0 * * Os_TE_304732 Chr5 18043150 18043151 + ORSgTETNOOT00908 242 0.5911 (1638/2771) 0 * Os_TE_304731 Os_TE_304731 Chr5 18043143 18043142 + ORSgTETNOOT01219 231 0.6084 (1751/2878) 0 * Os_TE_304732 Os_TE_304706 Chr5 18035199 18035200 + ORSiTERTOOT00296 5553 0.2381 (712/2990) 0 * Os_TE_304705 Os_TE_304705 Chr5 18035195 18035194 - SC-3_LTR 5748 0.2356 (705/2992) 0 * Os_TE_304706 Os_TE_304691 Chr5 18027375 18027374 + ORSgTEMT00600376 329 0.0044 (13/2972) 0 * * Os_TE_304660 Chr5 18012199 18012198 + MERMITEB 1610 0.1771 (529/2987) 0 * * Os_TE_304655 Chr5 18010612 18010611 - AMYLTP 383 0.0013 (4/2982) 0 * * Os_TE_304646 Chr5 18009619 18009618 - ORSgTEMT01400022 212 0.1706 (502/2942) 0 * Os_TE_304645 Os_TE_304645 Chr5 18009615 18009616 - ORSgTEMT01400014 209 0.1672 (490/2930) 0 * Os_TE_304646 Os_TE_304643 Chr5 18007888 18007557 - ORSgTEMT00100093 337 0.8323 (2363/2839) 1 Intact * Os_TE_304639 Chr5 18007451 18007452 + TWIF 586 0.0496 (135/2722) 0 * Os_TE_304638 Os_TE_304638 Chr5 18007444 18007443 - ORSiTETNOOT00134 607 0.0730 (204/2794) 0 * Os_TE_304639 Os_TE_304636 Chr5 18006744 18006743 - SC-3_LTR 5748 0.0003 (1/2954) 0 * * Os_TE_304634 Chr5 18006487 18006488 - SC-3_LTR 5748 0.0003 (1/2990) 0 * Os_TE_304633 Os_TE_304633 Chr5 18006483 18006482 + ORSiTERTOOT00296 5553 0.0003 (1/2971) 0 * Os_TE_304634 Os_TE_304632 Chr5 18004361 18004360 - ORSgTEMT01700659 156 0.1806 (535/2963) 0 * Os_TE_304631 Os_TE_304631 Chr5 18004357 18004358 + ORSgTEMT01701172 153 0.1748 (517/2957) 0 * Os_TE_304632 Os_TE_304629 Chr5 18004133 18004134 - SC-3_LTR 5748 0.0013 (4/2969) 0 * * Os_TE_304617 Chr5 17997580 17997581 - UNIQUE 158 0.0003 (1/2980) 0 * * Os_TE_304610 Chr5 17994673 17994674 + INDITTO 263 0.0060 (3/500) 0 * Os_TE_304609 Os_TE_304609 Chr5 17994671 17994670 - INDITTO 263 0.4495 (530/1179) 0 * Os_TE_304610 Os_TE_304600 Chr5 17992836 17992835 - ORSgTEMT00900741 219 0.1758 (516/2935) 0 * * Os_TE_304595 Chr5 17991520 17991521 + COPI2_LTR 4733 0.0010 (3/2973) 0 * Os_TE_304594 Os_TE_304594 Chr5 17991516 17991515 - COPI2_LTR 4733 0.0017 (5/2963) 0 * Os_TE_304595 Os_TE_304593 Chr5 17991395 17991396 + ORSgTETNOOT02577 232 0.1597 (468/2931) 0 * Os_TE_304592 Os_TE_304592 Chr5 17991394 17991393 - ORSgTETNOOT01607 258 0.1662 (490/2949) 0 * Os_TE_304593 Os_TE_304590 Chr5 17990950 17990807 + ORSgTEMT00500476 150 0.8307 (2482/2988) 1 Intact Os_TE_304588 Os_TE_304588 Chr5 17990799 17990950 + ORSgTEMT00500512 153 0.8302 (2478/2985) 1 Intact Os_TE_304590 Os_TE_304581 Chr5 17985304 17985303 - STOWAWAY18_OS 216 0.0003 (1/2990) 0 * * Os_TE_304580 Chr5 17982990 17982991 + AMYLTP 383 0.0014 (4/2847) 0 * Os_TE_304579 Os_TE_304579 Chr5 17982982 17982981 - AMYLTP 383 0.0018 (5/2855) 0 * Os_TE_304580 Os_TE_304574 Chr5 17982465 17982466 - ORSgTEMT00500471 125 0.1765 (519/2940) 0 * * Os_TE_304566 Chr5 17979229 17979075 - ORSgTEMT01701617 154 0.8313 (2440/2935) 1 Intact Os_TE_304564 Os_TE_304564 Chr5 17979075 17979228 + ORSgTEMT01701254 154 0.8396 (2360/2811) 1 Intact Os_TE_304566 Os_TE_304553 Chr5 17976555 17976556 - HARB-1_OS 5166 0.0003 (1/2895) 0 * Os_TE_304552 Os_TE_304552 Chr5 17976553 17976552 + HARB-1_OS 5166 0.0004 (1/2853) 0 * Os_TE_304553 Os_TE_304549 Chr5 17975912 17975538 - ORSgTEMT03800066 376 0.8340 (2422/2904) 1 Intact * Os_TE_304519 Chr5 17969458 17969459 - F569 228 0.1720 (514/2989) 0 * Os_TE_304518 Os_TE_304518 Chr5 17969456 17969455 + F569 228 0.1746 (523/2996) 0 * Os_TE_304519 Os_TE_304517 Chr5 17969223 17969222 - ORSgTEMT01600639 228 0.1649 (489/2966) 0 * Os_TE_304516 Os_TE_304516 Chr5 17969220 17969221 - ORSgTEMT01601208 238 0.1574 (464/2948) 0 * Os_TE_304517 Os_TE_304500 Chr5 17959627 17960189 - ORSiTERTOOT00291 11421 0.8351 (2501/2995) 1 Intact * Os_TE_304492 Chr5 17953645 17953646 + ORSiTERTOOT00296 5553 0.0007 (2/2993) 0 * Os_TE_304491 Os_TE_304491 Chr5 17953641 17953640 - SC-3_LTR 5748 0.0007 (2/2991) 0 * Os_TE_304492 Os_TE_304451 Chr5 17922225 17922224 + ORSgTETNOOT02019 240 0.0003 (1/2935) 0 * * Os_TE_304436 Chr5 17918203 17917973 + ORSgTETNOOT01219 231 0.3390 (940/2773) 1 Intact Os_TE_304435 Os_TE_304435 Chr5 17917969 17918203 + ORSgTETNOOT00908 242 0.3170 (940/2965) 1 Intact Os_TE_304436 Os_TE_304425 Chr5 17913102 17913103 + ORSiTERTOOT00296 5553 0.0003 (1/2994) 0 * Os_TE_304424 Os_TE_304424 Chr5 17913098 17913097 - SC-3_LTR 5748 0.0003 (1/2993) 0 * Os_TE_304425 Os_TE_304411 Chr5 17909629 17909630 - COPIA2-LTR_OS 6433 0.0025 (7/2840) 0 * * Os_TE_304400 Chr5 17908096 17908097 - TELIA 141 0.0006 (1/1584) 0 * * Os_TE_304399 Chr5 17907810 17907811 + ORSgTETNOOT00908 242 0.0025 (6/2419) 0 * * Os_TE_304366 Chr5 17898243 17898244 + HARB-1_OS 5166 0.0110 (32/2911) 0 * * Os_TE_304365 Chr5 17898075 17888991 + RIREX_LTR 8828 0.0639 (176/2755) 1 Intact Os_TE_304360 Os_TE_304360 Chr5 17888991 17898075 - RIREX_LTR 8828 0.0652 (187/2867) 1 Intact Os_TE_304365 Os_TE_304322 Chr5 17862448 17862447 + SZ-21LTR 1236 0.0003 (1/2986) 0 * * Os_TE_304317 Chr5 17858151 17858150 + ORSiTERTOOT00034 791 0.0003 (1/2970) 0 * * Os_TE_304312 Chr5 17850749 17850748 + STOWAWAY51_OS 246 0.0003 (1/2940) 0 * * Os_TE_304267 Chr5 17840548 17840549 - COPIA2-LTR_OS 6433 0.0003 (1/2972) 0 * Os_TE_304266 Os_TE_304266 Chr5 17840544 17840543 + COPIA2-LTR_OS 6433 0.0003 (1/2976) 0 * Os_TE_304267 Os_TE_304203 Chr5 17824594 17824595 + ORSgTETNOOT00032 218 0.0690 (167/2420) 0 * * Os_TE_304196 Chr5 17822002 17822003 + ORSgTETNOOT01846 238 0.0020 (6/2930) 0 * Os_TE_304195 Os_TE_304195 Chr5 17821999 17821998 + ORSgTETNOOT00792 273 0.0010 (3/2958) 0 * Os_TE_304196 Os_TE_304180 Chr5 17816819 17816818 + ORSgTEMT00500095 150 0.0020 (6/2996) 0 * * Os_TE_304179 Chr5 17816669 17816668 - UNIQUE 158 0.0020 (6/2997) 0 * * Os_TE_304156 Chr5 17804712 17804711 + STOWAWAY51_OS 246 0.0010 (3/2994) 0 * * Os_TE_304152 Chr5 17802660 17802300 - ORSgTEMT00600304 361 0.3847 (1133/2945) 1 Intact * Os_TE_304145 Chr5 17800958 17798955 + Cassandra_OS-LTR 764 0.3841 (1134/2952) 1 Intact * Os_TE_304143 Chr5 17800285 17800286 + TRUNCATOR 2918 0.0081 (7/867) -1 * * Os_TE_304133 Chr5 17798649 17797629 - GYPSO_LTR 9828 0.4033 (1138/2822) 1 Solo_LTR * Os_TE_304128 Chr5 17797214 17797215 + COPIA2-LTR_OS 6433 0.0004 (1/2521) 0 * Os_TE_304127 Os_TE_304127 Chr5 17797210 17797209 - COPIA2-LTR_OS 6433 0.0004 (1/2750) 0 * Os_TE_304128 Os_TE_304125 Chr5 17796266 17796265 - ORSiTETNOOT00107 906 0.0020 (6/2992) 0 * Os_TE_304124 Os_TE_304124 Chr5 17796262 17796263 + ORSiTETNOOT00107 906 0.0020 (6/2994) 0 * Os_TE_304125 Os_TE_304122 Chr5 17795136 17795137 - ORSiTETNOOT00216 3569 0.0043 (5/1173) 0 * Os_TE_304121 Os_TE_304121 Chr5 17795129 17795128 + TWIFBIG 3567 0.0051 (6/1180) 0 * Os_TE_304122 Os_TE_304114 Chr5 17786943 17786944 + ORSiTERTOOT00392 5205 0.0015 (2/1305) 0 * Os_TE_304113 Os_TE_304113 Chr5 17786939 17786938 - ORSiTERTOOT00392 5205 0.0008 (1/1278) 0 * Os_TE_304114 Os_TE_304108 Chr5 17782871 17782870 - SC-8_LTR 4951 0.0003 (1/2990) 0 * * Os_TE_304106 Chr5 17780783 17780784 - TYPEU1 380 0.6346 (1900/2994) 0 * * Os_TE_304086 Chr5 17772778 17772619 - ORSgTEMT01701366 170 0.6258 (965/1542) 1 Intact Os_TE_304084 Os_TE_304084 Chr5 17772620 17772776 - STOWAWAY1_OS 149 0.3159 (945/2991) 1 Intact Os_TE_304086 Os_TE_304044 Chr5 17758164 17758165 - SZ-25LTR 330 0.0790 (83/1050) 0 * Os_TE_304043 Os_TE_304043 Chr5 17758160 17758159 + COPI1_LTR 4721 0.0779 (82/1053) 0 * Os_TE_304044 Os_TE_304041 Chr5 17757578 17757579 - ORSgTETNOOT00534 256 0.0801 (84/1049) 0 * * Os_TE_304038 Chr5 17756504 17756505 - SZ-63_LTR 9602 0.0050 (6/1205) 0 * * Os_TE_304025 Chr5 17753990 17753989 - DS-RICE2N 613 0.7845 (761/970) 0 * * Os_TE_304013 Chr5 17748893 17748892 - ORSgTEMT01701254 154 0.0067 (6/897) 0 * Os_TE_304012 Os_TE_304012 Chr5 17748890 17748891 + ORSgTEMT01700791 134 0.0024 (5/2083) 0 * Os_TE_304013 Os_TE_303996 Chr5 17744910 17744911 - SZ-7A_LTR 11400 0.0062 (6/966) 0 * * Os_TE_303994 Chr5 17744786 17744785 + ORSgTEMT01601934 207 0.0039 (4/1019) 0 * * Os_TE_303985 Chr5 17742570 17742569 - CACTA-H 1152 0.0014 (4/2925) 0 * * Os_TE_303977 Chr5 17738594 17738593 - RIRE2_LTR 11306 0.0017 (5/2917) 0 * * Os_TE_303958 Chr5 17724255 17724254 - OSTE9 421 0.6575 (1770/2692) 0 * * Os_TE_303939 Chr5 17718818 17718819 - BUHUI 375 0.6584 (1889/2869) 0 * Os_TE_303938 Os_TE_303938 Chr5 17718816 17718815 + BUHUI 375 0.6703 (1972/2942) 0 * Os_TE_303939 Os_TE_303927 Chr5 17714017 17714018 - COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_303926 Os_TE_303926 Chr5 17714013 17714012 + COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_303927 Os_TE_303872 Chr5 17683622 17683623 + DS-RICE2N 613 0.0271 (81/2992) 0 * Os_TE_303871 Os_TE_303871 Chr5 17683615 17683614 - DS-RICE2N 613 0.0248 (74/2982) 0 * Os_TE_303872 Os_TE_303867 Chr5 17682395 17682394 - TRUNCATOR 2918 0.0003 (1/2910) 0 * * Os_TE_303864 Chr5 17681345 17681346 + SZ-55_LTR 10318 0.0521 (53/1018) 0 * Os_TE_303863 Os_TE_303863 Chr5 17681341 17681340 - SZ-55_LTR 10318 0.0523 (53/1013) 0 * Os_TE_303864 Os_TE_303861 Chr5 17679669 17679668 - ORSgTEMT00900099 250 0.0007 (2/2905) 0 * Os_TE_303860 Os_TE_303860 Chr5 17679665 17679666 - ORSgTEMT00900817 229 0.0007 (2/2904) 0 * Os_TE_303861 Os_TE_303835 Chr5 17672019 17672020 + GYPSY-A_LTR 8951 0.0003 (1/2895) 0 * Os_TE_303834 Os_TE_303834 Chr5 17672015 17672014 - SZ-40LTR 2465 0.0003 (1/2979) 0 * Os_TE_303835 Os_TE_303832 Chr5 17670417 17670418 - ORSgTETNOOT01930 140 0.0028 (8/2878) 0 * * Os_TE_303829 Chr5 17669462 17669461 + STOWAWAY18_OS 216 0.6913 (2011/2909) 0 * * Os_TE_303819 Chr5 17667515 17666472 + ORSgTETNOOT01286 235 0.3357 (947/2821) 1 Intact Os_TE_303813 Os_TE_303813 Chr5 17666464 17667515 + ORSgTETNOOT01846 238 0.3307 (925/2797) 1 Intact Os_TE_303819 Os_TE_303812 Chr5 17665728 17665729 + MERMITE18B 1306 0.7005 (2096/2992) 0 * Os_TE_303811 Os_TE_303811 Chr5 17665720 17665719 - MERMITE18B 1306 0.7018 (2099/2991) 0 * Os_TE_303812 Os_TE_303809 Chr5 17661933 17661934 - TYPEM 227 0.6650 (1941/2919) 0 * Os_TE_303808 Os_TE_303808 Chr5 17661932 17661931 - ORSgTEMT02400179 221 0.6728 (1997/2968) 0 * Os_TE_303809 Os_TE_303797 Chr5 17657957 17657956 + ORSgTEMT01601591 242 0.5986 (1709/2855) 0 * * Os_TE_303796 Chr5 17657954 17657955 + ORSgTEMT01601591 242 0.4838 (1103/2280) 0 * Os_TE_303795 Os_TE_303795 Chr5 17657949 17657948 + ORSgTEMT01600726 235 0.5983 (1686/2818) 0 * Os_TE_303796 Os_TE_303781 Chr5 17647976 17646903 + DASIA-2 1198 0.3113 (932/2994) 1 Intact Os_TE_303777 Os_TE_303777 Chr5 17646903 17647976 + DASIA-2 1198 0.3067 (915/2983) 1 Intact Os_TE_303781 Os_TE_303751 Chr5 17639259 17639260 - SC-3_LTR 5748 0.0003 (1/2987) 0 * Os_TE_303750 Os_TE_303750 Chr5 17639255 17639254 + ORSiTERTOOT00296 5553 0.0003 (1/2986) 0 * Os_TE_303751 Os_TE_303746 Chr5 17636372 17636373 - RIREX_LTR 8828 0.0003 (1/2986) 0 * Os_TE_303745 Os_TE_303745 Chr5 17636368 17636367 + RIREX_LTR 8828 0.0003 (1/2980) 0 * Os_TE_303746 Os_TE_303729 Chr5 17629223 17629884 - CASTAWAY 364 0.5402 (968/1792) 1 Intact * Os_TE_303727 Chr5 17628952 17628953 + COPIA2-LTR_OS 6433 0.0003 (1/2976) 0 * Os_TE_303726 Os_TE_303726 Chr5 17628948 17628947 - COPIA2-LTR_OS 6433 0.0007 (2/2965) 0 * Os_TE_303727 Os_TE_303722 Chr5 17626596 17626595 - MuDR2_OS 6770 0.0003 (1/2989) 0 * * Os_TE_303703 Chr5 17622240 17622241 - SZ-55_LTR 10318 0.0003 (1/2873) 0 * Os_TE_303702 Os_TE_303702 Chr5 17622236 17622235 + SZ-55_LTR 10318 0.0003 (1/2887) 0 * Os_TE_303703 Os_TE_303700 Chr5 17621777 17621778 + ORSiTERTOOT00402 2660 0.0003 (1/2989) 0 * Os_TE_303699 Os_TE_303699 Chr5 17621773 17621772 - ORSiTERTOOT00402 2660 0.0003 (1/2989) 0 * Os_TE_303700 Os_TE_303672 Chr5 17603049 17603048 + CACTA-B 1103 0.6919 (2039/2947) 0 * Os_TE_303671 Os_TE_303671 Chr5 17603048 17603049 - ORSgTETN00200001 10994 0.6797 (1931/2841) 0 * Os_TE_303672 Os_TE_303665 Chr5 17600369 17600370 + COPI2_LTR 4733 0.0004 (1/2245) 0 * * Os_TE_303662 Chr5 17595746 17595745 - STOWAWAY44_OS 240 0.0003 (1/2965) 0 * * Os_TE_303660 Chr5 17594953 17594954 + ORSgTEMT01602004 234 0.0017 (5/2991) 0 * * Os_TE_303659 Chr5 17593826 17593825 - ORSgTETNOOT00544 147 0.0017 (5/2904) 0 * * Os_TE_303643 Chr5 17584502 17584503 + ORSiTERTOOT00296 5553 0.0003 (1/2995) 0 * Os_TE_303642 Os_TE_303642 Chr5 17584498 17584497 - SC-3_LTR 5748 0.0003 (1/2993) 0 * Os_TE_303643 Os_TE_303607 Chr5 17566551 17566552 + SINE9_OS 293 0.0017 (5/2990) 0 * Os_TE_303606 Os_TE_303606 Chr5 17566542 17566541 - SINE9_OS 293 0.0017 (5/2992) 0 * Os_TE_303607 Os_TE_303605 Chr5 17565709 17565708 - ORSgTEMT04800063 360 0.6940 (2048/2951) 0 * * Os_TE_303600 Chr5 17558581 17558580 + RIREX_LTR 8828 0.6608 (1950/2951) 0 * * Os_TE_303597 Chr5 17558336 17558335 + COWARD-3 221 0.6957 (2069/2974) 0 * * Os_TE_303594 Chr5 17558175 17557432 - CLOUD 734 0.3853 (952/2471) 1 Intact Os_TE_303592 Os_TE_303592 Chr5 17557432 17558175 - CLOUD 734 0.3119 (930/2982) 1 Intact Os_TE_303594 Os_TE_303574 Chr5 17547554 17547553 + ORSgTEMT00101457 316 0.6939 (2067/2979) 0 * * Os_TE_303547 Chr5 17533388 17533387 + SEVERIN-2 1952 0.6846 (1993/2911) 0 * * Os_TE_303546 Chr5 17533384 17533385 - SEVERIN-2 1952 0.6824 (1972/2890) 0 * Os_TE_303545 Os_TE_303545 Chr5 17533381 17533380 + SEVERIN-2 1952 0.0051 (5/974) 0 * Os_TE_303546 Os_TE_303543 Chr5 17530959 17530960 + ORSgTEMT01701478 178 0.6932 (2061/2973) 0 * * Os_TE_303536 Chr5 17527157 17526959 - ORSgTEMT02000012 196 0.3144 (936/2977) 1 Intact * Os_TE_303529 Chr5 17522637 17522638 + MERMITEH 1307 0.7022 (2092/2979) 0 * * Os_TE_303527 Chr5 17522627 17522628 + TWIFB1 3737 0.0003 (1/2986) 0 * * Os_TE_303521 Chr5 17518521 17518520 - ORSiTETNOOT00134 607 0.0210 (61/2899) 0 * * Os_TE_303517 Chr5 17513880 17513881 + ORSiTERTOOT00296 5553 0.2616 (783/2993) 0 * Os_TE_303516 Os_TE_303516 Chr5 17513876 17513875 - SC-3_LTR 5748 0.2610 (780/2988) 0 * Os_TE_303517 Os_TE_303504 Chr5 17504563 17504564 + COPI2_LTR 4733 0.0003 (1/2984) 0 * * Os_TE_303499 Chr5 17501601 17501602 + RETRO3_LTR 12751 0.0013 (4/2970) 0 * * Os_TE_303494 Chr5 17499744 17499745 + TWIFB1 3737 0.0003 (1/2989) 0 * * Os_TE_303460 Chr5 17488808 17488809 + ORSiTERTOOT00027 10853 0.0014 (4/2919) 0 * * Os_TE_303398 Chr5 17455397 17455396 + MuDR2_OS 6770 0.0013 (4/2978) 0 * * Os_TE_303391 Chr5 17450056 17450057 + ORSiTERTOOT00296 5553 0.0007 (2/2994) 0 * Os_TE_303390 Os_TE_303390 Chr5 17450052 17450051 - SC-3_LTR 5748 0.0007 (2/2996) 0 * Os_TE_303391 Os_TE_303383 Chr5 17441011 17441012 - RIREX_LTR 8828 0.0017 (5/2980) 0 * Os_TE_303382 Os_TE_303382 Chr5 17441007 17441006 + RIREX_LTR 8828 0.0020 (6/2993) 0 * Os_TE_303383 Os_TE_303256 Chr5 17382759 17382760 + ORSgTEMT02400206 225 0.0003 (1/2943) 0 * * Os_TE_303255 Chr5 17382659 17382660 - MuDR2_OS 6770 0.0004 (1/2832) 0 * * Os_TE_303248 Chr5 17379403 17379404 + ORSiTERTOOT00296 5553 0.0003 (1/2988) 0 * Os_TE_303247 Os_TE_303247 Chr5 17379399 17379398 - SC-3_LTR 5748 0.0003 (1/2988) 0 * Os_TE_303248 Os_TE_303233 Chr5 17373903 17373904 + AMYLTP 383 0.0003 (1/2984) 0 * Os_TE_303232 Os_TE_303232 Chr5 17373895 17373894 - AMYLTP 383 0.0007 (2/2982) 0 * Os_TE_303233 Os_TE_303227 Chr5 17373455 17373456 - COPIA2-LTR_OS 6433 0.0007 (2/2970) 0 * Os_TE_303226 Os_TE_303226 Chr5 17373451 17373450 + COPIA2-LTR_OS 6433 0.0007 (2/2963) 0 * Os_TE_303227 Os_TE_303198 Chr5 17369051 17369050 + ORSiTERTOOT00034 791 0.0003 (1/2900) 0 * * Os_TE_303197 Chr5 17368449 17368448 + TRUNCATOR 2918 0.0012 (1/854) 0 * * Os_TE_303195 Chr5 17361632 17361633 - SC-3_LTR 5748 0.0003 (1/2989) 0 * Os_TE_303194 Os_TE_303194 Chr5 17361628 17361627 + ORSiTERTOOT00296 5553 0.0003 (1/2987) 0 * Os_TE_303195 Os_TE_303163 Chr5 17352884 17352885 + HARB-1_OS 5166 0.0101 (30/2964) 0 * Os_TE_303162 Os_TE_303162 Chr5 17352882 17352881 - HARB-1_OS 5166 0.0101 (30/2958) 0 * Os_TE_303163 Os_TE_303139 Chr5 17347523 17347524 - OSTE14 885 0.0007 (1/1344) 0 * * Os_TE_303122 Chr5 17337700 17337701 + SC-8_LTR 4951 0.0003 (1/2997) 0 * Os_TE_303121 Os_TE_303121 Chr5 17337696 17337695 - SC-8_LTR 4951 0.0003 (1/2998) 0 * Os_TE_303122 Os_TE_303115 Chr5 17335345 17335346 - RIREX_LTR 8828 0.0021 (6/2883) 0 * Os_TE_303114 Os_TE_303114 Chr5 17335341 17335340 + RIREX_LTR 8828 0.0024 (7/2883) 0 * Os_TE_303115 Os_TE_303080 Chr5 17325011 17324773 + ORSgTEMT01601983 238 0.2934 (872/2972) 1 Intact * Os_TE_302978 Chr5 17286987 17285725 + SZLTR 1249 0.2925 (869/2971) 1 Intact Os_TE_302975 Os_TE_302975 Chr5 17285725 17286987 - SZLTR 1249 0.2926 (871/2977) 1 Intact Os_TE_302978 Os_TE_302894 Chr5 17249221 17249222 - OLO24 345 0.0024 (7/2956) 0 * Os_TE_302893 Os_TE_302893 Chr5 17249219 17249218 + OLO24 345 0.0034 (10/2954) 0 * Os_TE_302894 Os_TE_302890 Chr5 17248393 17248392 + ORSgTEMT01601591 242 0.0034 (10/2973) 0 * * Os_TE_302889 Chr5 17248390 17248391 + ORSgTEMT01601591 242 0.0003 (1/2969) 0 * * Os_TE_302876 Chr5 17245308 17245307 + ORSgTETNOOT00908 242 0.0214 (64/2988) 0 * * Os_TE_302873 Chr5 17244196 17244197 - ORSgTEMT02400179 221 0.0013 (4/2995) 0 * Os_TE_302872 Os_TE_302872 Chr5 17244195 17244194 - TYPEM 227 0.0014 (4/2780) 0 * Os_TE_302873 Os_TE_302864 Chr5 17241600 17241599 - TYPEU1 380 0.0034 (10/2983) 0 * * Os_TE_302862 Chr5 17241540 17241541 + RETRO2_LTR 12874 0.0792 (236/2981) 0 * * Os_TE_302847 Chr5 17234889 17234888 + STOWAWAY17_OS 259 0.0087 (10/1145) 0 * * Os_TE_302827 Chr5 17227940 17227941 - INDITTO 263 0.3445 (1028/2984) 0 * * Os_TE_302824 Chr5 17227545 17227546 - DS-RICE2N 613 0.0034 (10/2985) 0 * Os_TE_302823 Os_TE_302823 Chr5 17227538 17227537 + DS-RICE2N 613 0.0039 (11/2853) 0 * Os_TE_302824 Os_TE_302793 Chr5 17214027 17214026 - OSTE14 885 0.0030 (9/2979) 0 * * Os_TE_302759 Chr5 17200962 17200961 + WUWU 113 0.0037 (11/2993) 0 * * Os_TE_302758 Chr5 17200799 17200800 - ORSgTEMT01700631 151 0.0033 (10/2993) 0 * * Os_TE_302757 Chr5 17200792 17200793 + ORSgTEMT01701101 133 0.0033 (10/2989) 0 * * Os_TE_302756 Chr5 17200738 17200737 + ORSgTEMT01701071 170 0.0027 (8/2985) 0 * * Os_TE_302718 Chr5 17185351 17185350 + MERMITEB 1610 0.0007 (2/2967) 0 * * Os_TE_302712 Chr5 17183282 17183283 + AMYLTP 383 0.0820 (239/2916) 0 * Os_TE_302711 Os_TE_302711 Chr5 17183274 17183273 - AMYLTP 383 0.0790 (229/2900) 0 * Os_TE_302712 Os_TE_302710 Chr5 17182755 17182754 + STOWAWAY11_OS 292 0.0033 (10/2995) 0 * * Os_TE_302702 Chr5 17180817 17180818 + ORSgTEMT00600124 361 0.0030 (9/2989) 0 * * Os_TE_302698 Chr5 17180267 17180268 + SEVERIN-2 1952 0.0003 (1/2987) 0 * * Os_TE_302639 Chr5 17155014 17155015 + THRIA 534 0.0041 (11/2702) 0 * * Os_TE_302638 Chr5 17154895 17154896 + SPMLIKE 10989 0.6464 (1905/2947) 0 * Os_TE_302637 Os_TE_302637 Chr5 17154893 17154892 - ORSgTETN00200001 10994 0.5930 (1575/2656) 0 * Os_TE_302638 Os_TE_302630 Chr5 17153740 17153741 - TRUNCATOR2_LTR 2904 0.0003 (1/2993) 0 * Os_TE_302629 Os_TE_302629 Chr5 17153736 17153735 + ORSiTERTOOT00028 8600 0.0003 (1/2994) 0 * Os_TE_302630 Os_TE_302620 Chr5 17150940 17150941 + ENSPM_OS 9843 0.0034 (10/2977) 0 * Os_TE_302619 Os_TE_302619 Chr5 17150938 17150937 - ENSPM_OS 9843 0.0034 (10/2982) 0 * Os_TE_302620 Os_TE_302618 Chr5 17150494 17150495 - MPING 430 0.0161 (48/2989) 0 * Os_TE_302617 Os_TE_302617 Chr5 17150492 17150491 + MPING 430 0.0164 (49/2986) 0 * Os_TE_302618 Os_TE_302615 Chr5 17150404 17150405 + ORSgTEMT01601591 242 0.0003 (1/2941) 0 * * Os_TE_302576 Chr5 17133935 17133936 - COPIA2-LTR_OS 6433 0.0003 (1/2982) 0 * Os_TE_302575 Os_TE_302575 Chr5 17133931 17133930 + COPIA2-LTR_OS 6433 0.0003 (1/2972) 0 * Os_TE_302576 Os_TE_302528 Chr5 17115415 17115416 + COPI2_LTR 4733 0.0047 (14/2981) 0 * Os_TE_302527 Os_TE_302527 Chr5 17115411 17115410 - COPI2_LTR 4733 0.0050 (15/2984) 0 * Os_TE_302528 Os_TE_302430 Chr5 17072692 17072693 + TRUNCATOR 2918 0.4804 (1434/2985) 0 * * Os_TE_302412 Chr5 17060836 17060837 - SC-3_LTR 5748 0.0003 (1/2986) 0 * Os_TE_302411 Os_TE_302411 Chr5 17060832 17060831 + ORSiTERTOOT00296 5553 0.0003 (1/2983) 0 * Os_TE_302412 Os_TE_302407 Chr5 17057850 17057851 + ORSiTERTOOT00296 5553 0.0007 (2/2965) 0 * Os_TE_302406 Os_TE_302406 Chr5 17057846 17057845 - SC-3_LTR 5748 0.0007 (2/2962) 0 * Os_TE_302407 Os_TE_302369 Chr5 17037017 17037018 + INDITTO 263 0.0025 (7/2802) 0 * * Os_TE_302366 Chr5 17035898 17035897 - STOWAWAY51_OS 246 0.0004 (1/2716) 0 * * Os_TE_302362 Chr5 17035413 17035414 - SZ-33LTR 575 0.0003 (1/2917) 0 * * Os_TE_302361 Chr5 17034883 17034882 - STOWAWAY48_OS 261 0.0004 (1/2741) 0 * * Os_TE_302357 Chr5 17034419 17034420 - ORSgTEMT01700468 154 0.0007 (2/2884) 0 * * Os_TE_302322 Chr5 17027297 17027298 - OSTE33 1012 0.0020 (6/2950) 0 * Os_TE_302321 Os_TE_302321 Chr5 17027288 17027287 - OSTE33 1012 0.0017 (5/2955) 0 * Os_TE_302322 Os_TE_302320 Chr5 17027222 17027223 - COPIA2-LTR_OS 6433 0.0044 (13/2963) 0 * Os_TE_302319 Os_TE_302319 Chr5 17027218 17027217 + COPIA2-LTR_OS 6433 0.0030 (9/2960) 0 * Os_TE_302320 Os_TE_302299 Chr5 17014387 17014388 + SPMLIKE 10989 0.0020 (6/2970) 0 * * Os_TE_302297 Chr5 17013251 17013250 - RETROSAT2LTR 12796 0.1037 (310/2988) 0 * * Os_TE_302292 Chr5 17006432 17006433 + ORSiTERTOOT00296 5553 0.0003 (1/2917) 0 * * Os_TE_302288 Chr5 17004892 17004891 - ORSgTEMT00900099 250 0.0020 (6/2984) 0 * * Os_TE_302278 Chr5 17000835 17000834 - STOWAWAY51_OS 246 0.0003 (1/2986) 0 * Os_TE_302277 Os_TE_302277 Chr5 17000832 17000833 - STOWAWAY51_OS 246 0.0003 (1/2982) 0 * Os_TE_302278 Os_TE_302266 Chr5 16998705 16998706 + MERMITE18E 1528 0.0004 (1/2578) 0 * * Os_TE_302258 Chr5 16991917 16991918 - ORSiTERTOOT00294 1794 0.0023 (7/2983) 0 * * Os_TE_302257 Chr5 16991254 16991255 - SC-8_LTR 4951 0.0003 (1/2985) 0 * Os_TE_302256 Os_TE_302256 Chr5 16991250 16991249 + SC-8_LTR 4951 0.0003 (1/2990) 0 * Os_TE_302257 Os_TE_302223 Chr5 16967430 16967431 + SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_302222 Os_TE_302222 Chr5 16967426 16967425 - SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_302223 Os_TE_302210 Chr5 16964789 16964790 + STOWAWAY21_OS 243 0.0021 (6/2912) 0 * * Os_TE_302207 Chr5 16964341 16964342 + MUDRN1_OS 764 0.0017 (5/2948) 0 * * Os_TE_302135 Chr5 16932757 16932756 + ORSgTEMT01400039 200 0.0003 (1/2927) 0 * * Os_TE_302120 Chr5 16918814 16918815 + MuDR3_OS 8604 0.2516 (720/2862) 0 * Os_TE_302119 Os_TE_302119 Chr5 16918806 16918805 - MuDR3_OS 8604 0.2770 (812/2931) 0 * Os_TE_302120 Os_TE_302101 Chr5 16909471 16909472 + TWIF 586 0.0003 (1/2967) 0 * Os_TE_302100 Os_TE_302100 Chr5 16909464 16909463 - ORSiTETNOOT00134 607 0.0003 (1/2963) 0 * Os_TE_302101 Os_TE_302096 Chr5 16907631 16907630 + STOWAWAY51_OS 246 0.0003 (1/2996) 0 * Os_TE_302095 Os_TE_302095 Chr5 16907625 16907626 - STOWAWAY51_OS 246 0.0003 (1/2995) 0 * Os_TE_302096 Os_TE_302073 Chr5 16901719 16901720 - HARB-1_OS 5166 0.0007 (2/2988) 0 * * Os_TE_302065 Chr5 16897812 16897811 + COPI2_LTR 4733 0.0003 (1/2989) 0 * * Os_TE_302059 Chr5 16893850 16893851 - RETROSAT2LTR 12796 0.0024 (7/2896) 0 * * Os_TE_302046 Chr5 16889459 16889458 + DITTO3 260 0.0010 (3/2960) 0 * Os_TE_302045 Os_TE_302045 Chr5 16889458 16889459 - ORSgTEMT00900099 250 0.0014 (4/2952) 0 * Os_TE_302046 Os_TE_301993 Chr5 16865930 16865931 - ORSgTEMT00502257 142 0.0015 (3/2008) 0 * * Os_TE_301966 Chr5 16858005 16858006 - COPIA2-LTR_OS 6433 0.0003 (1/2979) 0 * Os_TE_301965 Os_TE_301965 Chr5 16858001 16858000 + COPIA2-LTR_OS 6433 0.0003 (1/2981) 0 * Os_TE_301966 Os_TE_301961 Chr5 16855495 16855496 + ORSiTERTOOT00074 4935 0.0021 (6/2918) 0 * Os_TE_301960 Os_TE_301960 Chr5 16855491 16855490 - ORSiTERTOOT00074 4935 0.0021 (6/2898) 0 * Os_TE_301961 Os_TE_301958 Chr5 16854785 16854786 + AMYLTP 383 0.0491 (146/2972) 0 * Os_TE_301957 Os_TE_301957 Chr5 16854777 16854776 - AMYLTP 383 0.0511 (152/2975) 0 * Os_TE_301958 Os_TE_301955 Chr5 16854134 16854135 + ORSgTETNOOT00908 242 0.0010 (3/2913) 0 * * Os_TE_301952 Chr5 16852952 16852953 + SC-8_LTR 4951 0.0003 (1/2995) 0 * Os_TE_301951 Os_TE_301951 Chr5 16852948 16852947 - SC-8_LTR 4951 0.0003 (1/2994) 0 * Os_TE_301952 Os_TE_301947 Chr5 16845711 16845710 + TWIFBIG 3567 0.0374 (110/2941) 0 * * Os_TE_301917 Chr5 16835503 16835504 - SC-3_LTR 5748 0.0087 (26/2983) 0 * Os_TE_301916 Os_TE_301916 Chr5 16835499 16835498 + ORSiTERTOOT00296 5553 0.0087 (26/2983) 0 * Os_TE_301917 Os_TE_301847 Chr5 16815072 16815071 - ORSgTEMT01800052 396 0.0010 (3/2989) 0 * Os_TE_301846 Os_TE_301846 Chr5 16815069 16815070 + ORSgTEMT01800100 438 0.0010 (3/2984) 0 * Os_TE_301847 Os_TE_301720 Chr5 16774695 16774696 + ORSgTEMT00500070 150 0.0010 (3/2985) 0 * Os_TE_301719 Os_TE_301719 Chr5 16774694 16774693 - ORSgTEMT00501758 147 0.0010 (3/2984) 0 * Os_TE_301720 Os_TE_301703 Chr5 16765153 16765154 - TYPEH 309 0.0010 (3/2963) 0 * Os_TE_301702 Os_TE_301702 Chr5 16765151 16765150 + TYPEH 309 0.0010 (3/2967) 0 * Os_TE_301703 Os_TE_301692 Chr5 16755763 16755764 + ORSiTERTOOT00296 5553 0.0003 (1/2986) 0 * Os_TE_301691 Os_TE_301691 Chr5 16755759 16755758 - SC-3_LTR 5748 0.0003 (1/2982) 0 * Os_TE_301692 Os_TE_301690 Chr5 16755641 16755640 + ORSgTEMT00100828 349 0.0013 (4/2985) 0 * * Os_TE_301578 Chr5 16715591 16715592 - ORSgTEMT01600244 239 0.0010 (3/2952) 0 * * Os_TE_301577 Chr5 16712886 16712887 - INDITTO 263 0.0064 (19/2974) 0 * Os_TE_301576 Os_TE_301576 Chr5 16712884 16712883 + INDITTO 263 0.0064 (19/2985) 0 * Os_TE_301577 Os_TE_301564 Chr5 16707305 16707306 - COPI2_LTR 4733 0.0003 (1/2990) 0 * Os_TE_301563 Os_TE_301563 Chr5 16707301 16707300 + COPI2_LTR 4733 0.0003 (1/2993) 0 * Os_TE_301564 Os_TE_301562 Chr5 16706971 16706972 - RETROSAT2LTR 12796 0.4105 (1227/2989) 0 * Os_TE_301561 Os_TE_301561 Chr5 16706969 16706968 + RETROSAT2LTR 12796 0.4088 (1155/2825) 0 * Os_TE_301562 Os_TE_301548 Chr5 16701854 16701626 - ORSgTEMT00900741 219 0.8875 (2658/2995) 1 Intact * Os_TE_301479 Chr5 16659333 16659334 + COPIA2-LTR_OS 6433 0.0003 (1/2864) 0 * * Os_TE_301468 Chr5 16655345 16655344 - TRUNCATOR 2918 0.3908 (1160/2968) 0 * Os_TE_301467 Os_TE_301467 Chr5 16655344 16655345 + TRUNCATOR 2918 0.4055 (1215/2996) 0 * Os_TE_301468 Os_TE_301461 Chr5 16650818 16650819 - ORSiTERTOOT00074 4935 0.0013 (4/2980) 0 * Os_TE_301460 Os_TE_301460 Chr5 16650814 16650813 + ORSiTERTOOT00074 4935 0.0013 (4/2987) 0 * Os_TE_301461 Os_TE_301432 Chr5 16622726 16622727 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_301431 Os_TE_301431 Chr5 16622722 16622721 - COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_301432 Os_TE_301406 Chr5 16617432 16617433 - SZ-22_LTR 4403 0.0004 (1/2350) 0 * Os_TE_301405 Os_TE_301405 Chr5 16617428 16617427 + ORSiTERTOOT00226 792 0.0005 (1/2061) 0 * Os_TE_301406 Os_TE_301345 Chr5 16594148 16591010 + OSCOPIA1_LTR 4754 0.4462 (1235/2768) 1 Intact Os_TE_301344 Os_TE_301344 Chr5 16591010 16594148 - OSCOPIA1_LTR 4754 0.4120 (1210/2937) 1 Intact Os_TE_301345 Os_TE_301341 Chr5 16590139 16590140 + ORSiCMCM00100019 2717 0.0013 (4/2993) 0 * * Os_TE_301335 Chr5 16586099 16586098 - ORSiTERT00200154 9386 0.0003 (1/2990) 0 * * Os_TE_301287 Chr5 16567872 16567873 + ORSiTERTOOT00296 5553 0.0003 (1/2997) 0 * Os_TE_301286 Os_TE_301286 Chr5 16567868 16567867 - SC-3_LTR 5748 0.0003 (1/2997) 0 * Os_TE_301287 Os_TE_301264 Chr5 16558544 16558545 + ORSgTETNOOT00908 242 0.2091 (614/2937) 0 * * Os_TE_301263 Chr5 16557938 16557939 + ORSgTETNOOT00908 242 0.0010 (3/2967) 0 * * Os_TE_301262 Chr5 16557525 16557526 + NDNA1TNA_OS 334 0.0010 (3/2990) 0 * Os_TE_301261 Os_TE_301261 Chr5 16557523 16557522 - NDNA1TNA_OS 334 0.0010 (3/2994) 0 * Os_TE_301262 Os_TE_301245 Chr5 16544646 16544647 - ORSiTERT00200154 9386 0.0107 (32/2985) 0 * Os_TE_301244 Os_TE_301244 Chr5 16544640 16544639 + TRUNCATOR 2918 0.0127 (38/2988) 0 * Os_TE_301245 Os_TE_301194 Chr5 16523164 16523165 + ORSiTERTOOT00226 792 0.0003 (1/2951) 0 * Os_TE_301193 Os_TE_301193 Chr5 16523160 16523159 - SZ-22_LTR 4403 0.0003 (1/2963) 0 * Os_TE_301194 Os_TE_301188 Chr5 16520563 16520564 - RIRE2_LTR 11306 0.2063 (618/2995) 0 * Os_TE_301187 Os_TE_301187 Chr5 16520559 16520558 + RIRE2_LTR 11306 0.2067 (619/2994) 0 * Os_TE_301188 Os_TE_301176 Chr5 16513585 16513586 - COPI2_LTR 4733 0.0020 (6/2994) 0 * Os_TE_301175 Os_TE_301175 Chr5 16513581 16513580 + COPI2_LTR 4733 0.0017 (5/2993) 0 * Os_TE_301176 Os_TE_301173 Chr5 16511805 16511806 + AMYLTP 383 0.0014 (4/2794) 0 * Os_TE_301172 Os_TE_301172 Chr5 16511797 16511796 - AMYLTP 383 0.0018 (5/2744) 0 * Os_TE_301173 Os_TE_301167 Chr5 16509973 16509972 - TRUNCATOR2_LTR 2904 0.0596 (178/2987) 0 * * Os_TE_301166 Chr5 16509818 16509819 + RIREX_LTR 8828 0.0030 (9/2968) 0 * * Os_TE_301138 Chr5 16500247 16500246 - RIRE2_LTR 11306 0.0021 (6/2905) 0 * * Os_TE_301116 Chr5 16495855 16495856 + ORSgTETNOOT00032 218 0.1352 (401/2965) 0 * * Os_TE_301115 Chr5 16494654 16494653 - TRUNCATOR 2918 0.0010 (3/2954) 0 * Os_TE_301114 Os_TE_301114 Chr5 16494653 16494654 + TRUNCATOR 2918 0.0010 (3/2958) 0 * Os_TE_301115 Os_TE_301109 Chr5 16491217 16491218 - RETRO2A_LTR 12895 0.0010 (3/2967) 0 * Os_TE_301108 Os_TE_301108 Chr5 16491213 16491212 + RETRO1_LTR 8314 0.0010 (3/2977) 0 * Os_TE_301109 Os_TE_301053 Chr5 16474429 16474430 - RIREX_LTR 8828 0.0003 (1/2993) 0 * Os_TE_301052 Os_TE_301052 Chr5 16474425 16474424 + RIREX_LTR 8828 0.0003 (1/2993) 0 * Os_TE_301053 Os_TE_301032 Chr5 16463294 16463293 + COPI2_LTR 4733 0.0003 (1/2993) 0 * * Os_TE_301027 Chr5 16460336 16460335 - RPO_OS 1983 0.0017 (5/2942) 0 * * Os_TE_301001 Chr5 16439675 16439676 + ORSiTERTOOT00028 8600 0.0751 (132/1757) -1 * * Os_TE_300999 Chr5 16438971 16438970 + ORSgTEMT00101194 329 0.0004 (1/2241) 0 * * Os_TE_300996 Chr5 16432566 16432567 - SZ-6LTR 5035 0.0027 (6/2249) 0 * Os_TE_300995 Os_TE_300995 Chr5 16432562 16432561 + SZ-6LTR 5035 0.0023 (6/2650) 0 * Os_TE_300996 Os_TE_300950 Chr5 16405148 16405149 - CACTA-P 1150 0.0109 (6/550) 0 * * Os_TE_300890 Chr5 16382221 16382222 + COPIA2-LTR_OS 6433 0.0003 (1/2889) 0 * * Os_TE_300887 Chr5 16380604 16380605 - MPING 430 0.0013 (4/2990) 0 * Os_TE_300886 Os_TE_300886 Chr5 16380602 16380601 + MPING 430 0.0013 (4/2992) 0 * Os_TE_300887 Os_TE_300884 Chr5 16380527 16380528 + INDITTO 263 0.1007 (300/2979) 0 * Os_TE_300883 Os_TE_300883 Chr5 16380525 16380524 - INDITTO 263 0.1030 (307/2980) 0 * Os_TE_300884 Os_TE_300869 Chr5 16376071 16376072 + COPIA2-LTR_OS 6433 0.0003 (1/2958) 0 * Os_TE_300868 Os_TE_300868 Chr5 16376067 16376066 - COPIA2-LTR_OS 6433 0.0003 (1/2965) 0 * Os_TE_300869 Os_TE_300856 Chr5 16368080 16368081 + MPING 430 0.0010 (3/2965) 0 * Os_TE_300855 Os_TE_300855 Chr5 16368078 16368077 - MPING 430 0.0010 (3/2944) 0 * Os_TE_300856 Os_TE_300847 Chr5 16367203 16367204 - YOUREN 286 0.0003 (1/2973) 0 * * Os_TE_300837 Chr5 16360369 16360368 - COPIA2-LTR_OS 6433 0.0003 (1/2948) 0 * * Os_TE_300817 Chr5 16350504 16350505 + SZ-62LTR 3649 0.0014 (4/2961) 0 * Os_TE_300816 Os_TE_300816 Chr5 16350500 16350499 - SZ-62LTR 3649 0.0014 (4/2956) 0 * Os_TE_300817 Os_TE_300800 Chr5 16348515 16348514 + ORSiTERTOOT00097 759 0.0884 (263/2976) 0 * Os_TE_300799 Os_TE_300799 Chr5 16348514 16348515 - SZ-22_LTR 4403 0.0882 (262/2970) 0 * Os_TE_300800 Os_TE_300747 Chr5 16332774 16332775 - TRUNCATOR2_LTR 2904 0.0011 (3/2844) 0 * * Os_TE_300709 Chr5 16317714 16317715 - SC-3_LTR 5748 0.0003 (1/2997) 0 * Os_TE_300708 Os_TE_300708 Chr5 16317710 16317709 + ORSiTERTOOT00296 5553 0.0003 (1/2996) 0 * Os_TE_300709 Os_TE_300691 Chr5 16309859 16309860 - SC-3_LTR 5748 0.0003 (1/2995) 0 * Os_TE_300690 Os_TE_300690 Chr5 16309855 16309854 + ORSiTERTOOT00296 5553 0.0003 (1/2995) 0 * Os_TE_300691 Os_TE_300628 Chr5 16286082 16286083 + ORSgTEMT02900076 336 0.0013 (4/2999) 0 * * Os_TE_300626 Chr5 16285549 16285548 - RETROSAT3_LTR 11537 0.0023 (7/2990) 0 * * Os_TE_300621 Chr5 16284019 16284020 + RETRO1_LTR 8314 0.1024 (303/2959) 0 * Os_TE_300620 Os_TE_300620 Chr5 16284015 16284014 - RETRO2A_LTR 12895 0.1003 (297/2961) 0 * Os_TE_300621 Os_TE_300613 Chr5 16280711 16280710 - TRUNCATOR 2918 0.7925 (2318/2925) 0 * Os_TE_300612 Os_TE_300612 Chr5 16280710 16280711 + TRUNCATOR 2918 0.7967 (2371/2976) 0 * Os_TE_300613 Os_TE_300610 Chr5 16280575 16280576 - ORSgTEMT02400064 212 0.7868 (2178/2768) 0 * * Os_TE_300589 Chr5 16273525 16273526 - TYPEH 309 0.0017 (5/2993) 0 * * Os_TE_300574 Chr5 16265748 16265749 - SZLTR 1249 0.0010 (3/2963) 0 * Os_TE_300573 Os_TE_300573 Chr5 16265744 16265743 + RETRO2_LTR 12874 0.0010 (3/2975) 0 * Os_TE_300574 Os_TE_300572 Chr5 16265061 16265062 - ORSiTEMT01300001 950 0.0017 (5/2968) 0 * Os_TE_300571 Os_TE_300571 Chr5 16265056 16265055 + KRISPIE 956 0.0017 (5/2968) 0 * Os_TE_300572 Os_TE_300550 Chr5 16252234 16252233 + TWIF 586 0.0003 (1/2994) 0 * * Os_TE_300549 Chr5 16251987 16251986 + ORSgTEMT00501504 140 0.0014 (4/2960) 0 * * Os_TE_300548 Chr5 16251755 16251756 - CLOUD 734 0.0013 (4/2965) 0 * Os_TE_300547 Os_TE_300547 Chr5 16251747 16251746 - CLOUD 734 0.0013 (4/2972) 0 * Os_TE_300548 Os_TE_300543 Chr5 16251404 16251405 + ORSiTERTOOT00291 11421 0.0020 (6/2927) 0 * * Os_TE_300524 Chr5 16246990 16246991 + STOWAWAY51_OS 246 0.0003 (1/2972) 0 * * Os_TE_300490 Chr5 16228023 16228024 - ORSiCMCM00100013 9728 0.0003 (1/2994) 0 * * Os_TE_300489 Chr5 16227840 16227839 + TRUNCATOR 2918 0.0033 (10/2996) 0 * * Os_TE_300447 Chr5 16220335 16220334 + STOWAWAY51_OS 246 0.0010 (3/2980) 0 * Os_TE_300446 Os_TE_300446 Chr5 16220329 16220330 - STOWAWAY51_OS 246 0.0010 (3/2988) 0 * Os_TE_300447 Os_TE_300429 Chr5 16212833 16212834 + RETRO2_LTR 12874 0.0996 (297/2982) 0 * Os_TE_300428 Os_TE_300428 Chr5 16212829 16212828 - RETRO2_LTR 12874 0.0999 (297/2972) 0 * Os_TE_300429 Os_TE_300427 Chr5 16212422 16212423 - CASTAWAY 364 0.0007 (2/2968) 0 * Os_TE_300426 Os_TE_300426 Chr5 16212419 16212418 - ORSgTEMT00600304 361 0.0007 (2/2969) 0 * Os_TE_300427 Os_TE_300423 Chr5 16211784 16211783 - GAIJIN 147 0.0004 (1/2529) -1 * * Os_TE_300421 Chr5 16209246 16209247 + ORSiTERTOOT00226 792 0.0020 (3/1520) -1 * * Os_TE_300389 Chr5 16204153 16204154 - INDITTO 263 0.0010 (3/2916) 0 * Os_TE_300388 Os_TE_300388 Chr5 16204151 16204150 + INDITTO 263 0.0010 (3/2919) 0 * Os_TE_300389 Os_TE_300386 Chr5 16203910 16203909 + RIREX_LTR 8828 0.0038 (10/2653) 0 * * Os_TE_300382 Chr5 16202926 16202925 - SZ-22_LTR 4403 0.0003 (1/2926) 0 * * Os_TE_300381 Chr5 16202714 16202715 - COPIA2-LTR_OS 6433 0.0003 (1/2928) 0 * * Os_TE_300359 Chr5 16190525 16190526 - RIRE2_LTR 11306 0.0033 (10/2993) 0 * Os_TE_300358 Os_TE_300358 Chr5 16190523 16190522 - ORSgTERT00201216 11284 0.0033 (10/2994) 0 * Os_TE_300359 Os_TE_300355 Chr5 16187923 16187924 - RIREX_LTR 8828 0.0007 (2/2968) 0 * Os_TE_300354 Os_TE_300354 Chr5 16187919 16187918 + RIREX_LTR 8828 0.0007 (2/2969) 0 * Os_TE_300355 Os_TE_300353 Chr5 16187352 16187351 + CACTA-B 1103 0.6159 (1732/2812) 0 * * Os_TE_300343 Chr5 16181658 16181659 - RETRO2_LTR 12874 0.0020 (6/2994) 0 * Os_TE_300342 Os_TE_300342 Chr5 16181654 16181653 + RETRO2_LTR 12874 0.0020 (6/2996) 0 * Os_TE_300343 Os_TE_300332 Chr5 16180030 16180031 - CLOUD 734 0.0283 (83/2930) 0 * Os_TE_300331 Os_TE_300331 Chr5 16180022 16180021 - CLOUD 734 0.0281 (82/2913) 0 * Os_TE_300332 Os_TE_300314 Chr5 16166858 16166713 + ORSgTEMT00500560 148 0.4729 (1141/2413) 0.92 Intact * Os_TE_300300 Chr5 16163308 16163307 + ORSgTERT00200753 402 0.8970 (2690/2999) 0 * * Os_TE_300297 Chr5 16158273 16158274 - HELITRON7_OS 10153 0.0013 (4/2997) 0 * * Os_TE_300295 Chr5 16157884 16157885 - TRUNCATOR2_LTR 2904 0.0003 (1/2994) 0 * Os_TE_300294 Os_TE_300294 Chr5 16157880 16157879 + ORSiTERTOOT00028 8600 0.0003 (1/2994) 0 * Os_TE_300295 Os_TE_300268 Chr5 16147538 16147198 - OLO24C 356 0.4054 (1178/2906) 1 Intact * Os_TE_300261 Chr5 16145730 16145731 - OSLINE1-4 4779 0.6014 (1743/2898) 0 * * Os_TE_300253 Chr5 16142811 16126118 + CACTA-I 1124 0.4171 (1243/2980) 1 Intact Os_TE_300214 Os_TE_300214 Chr5 16126115 16142811 - CACTA-B 1103 0.3986 (1158/2905) 1 Intact Os_TE_300253 Os_TE_300213 Chr5 16125869 16125868 - ORSgTEMT01601696 238 0.5872 (1713/2917) 0 * Os_TE_300212 Os_TE_300212 Chr5 16125866 16125867 + ORSgTEMT01602181 239 0.5968 (1766/2959) 0 * Os_TE_300213 Os_TE_300209 Chr5 16125190 16124955 + ORSgTETNOOT00908 242 0.4111 (1218/2963) 1 Intact * Os_TE_300169 Chr5 16114560 16114561 - INDITTO 263 0.0017 (5/2991) 0 * Os_TE_300168 Os_TE_300168 Chr5 16114558 16114557 + INDITTO 263 0.0017 (5/2986) 0 * Os_TE_300169 Os_TE_300159 Chr5 16111042 16111043 + AMYLTP 383 0.0453 (134/2955) 0 * * Os_TE_300153 Chr5 16108557 16108558 - ORSgTEMT03800066 376 0.0022 (6/2766) 0 * Os_TE_300152 Os_TE_300152 Chr5 16108554 16108553 + BUHUI 375 0.0022 (6/2735) 0 * Os_TE_300153 Os_TE_300150 Chr5 16107799 16107798 + SZ-9LTR 965 0.0004 (1/2660) 0 * * Os_TE_300126 Chr5 16086457 16086458 + ORSiTERTOOT00226 792 0.4866 (1456/2992) 0 * Os_TE_300125 Os_TE_300125 Chr5 16086453 16086452 - SZ-22_LTR 4403 0.4801 (1432/2983) 0 * Os_TE_300126 Os_TE_300124 Chr5 16086448 16086449 + ORSiTERTOOT00226 792 0.4860 (1455/2994) 0 * * Os_TE_300123 Chr5 16086265 16086266 - ORSgTETNOOT00754 253 0.0075 (5/666) 0 * * Os_TE_300105 Chr5 16084835 16084836 + ORSgTETNOOT02316 263 0.5034 (1319/2620) -1 * Os_TE_300104 Os_TE_300104 Chr5 16084833 16084832 - INDITTO 263 0.4969 (1293/2602) -1 * Os_TE_300105 Os_TE_300093 Chr5 16083517 16082262 + OSTE33 1012 0.1248 (315/2524) 1 Intact Os_TE_300090 Os_TE_300090 Chr5 16082262 16083517 + OSTE33 1012 0.1191 (301/2527) 1 Intact Os_TE_300093 Os_TE_300081 Chr5 16078706 16078705 - ZM13-2_OS 108 0.0003 (1/2976) 0 * * Os_TE_300058 Chr5 16059484 16059485 - ORSgTEMT01400022 212 0.0003 (1/2945) 0 * * Os_TE_300053 Chr5 16057835 16057836 - RETRO2_LTR 12874 0.0623 (180/2888) 0 * Os_TE_300052 Os_TE_300052 Chr5 16057831 16057830 + RETRO2_LTR 12874 0.0620 (180/2904) 0 * Os_TE_300053 Os_TE_300049 Chr5 16056286 16056285 + ORSgTEMT01701672 139 0.0003 (1/2973) 0 * * Os_TE_300042 Chr5 16053733 16053734 - ORSgTETN00200001 10994 0.0007 (2/2930) 0 * Os_TE_300041 Os_TE_300041 Chr5 16053731 16053730 + SPMLIKE 10989 0.0007 (2/2986) 0 * Os_TE_300042 Os_TE_300040 Chr5 16053027 16053028 + MUDRN3_OS 903 0.1053 (315/2991) 0 * Os_TE_300039 Os_TE_300039 Chr5 16053019 16053018 + MUDRN3_OS 903 0.1012 (302/2984) 0 * Os_TE_300040 Os_TE_300027 Chr5 16045521 16045520 + SC-4_LTR 5218 0.0009 (2/2322) 0 * * Os_TE_300010 Chr5 16041088 16029859 + SPMLIKE 10989 0.2998 (896/2989) 1 Intact Os_TE_300003 Os_TE_300003 Chr5 16029859 16041088 - ORSgTETN00200001 10994 0.2894 (852/2944) 1 Intact Os_TE_300010 Os_TE_300002 Chr5 16029785 16029784 - ORSgTERT00201216 11284 0.0014 (4/2955) 0 * Os_TE_300001 Os_TE_300001 Chr5 16029782 16029783 - RIRE2_LTR 11306 0.0014 (4/2952) 0 * Os_TE_300002 Os_TE_299989 Chr5 16029421 16029420 + ORSgTEMT00900897 248 0.0013 (4/2995) 0 * Os_TE_299988 Os_TE_299988 Chr5 16029417 16029418 - ORSgTEMT00900099 250 0.0013 (4/2992) 0 * Os_TE_299989 Os_TE_299918 Chr5 15996475 15996474 + ORSiTERTOOT00028 8600 0.0007 (2/2910) 0 * * Os_TE_299881 Chr5 15977432 15963157 + SPMLIKE 10989 0.1080 (316/2926) 1 Intact * Os_TE_299837 Chr5 15948700 15948701 - HATOS1 3488 0.1048 (276/2634) 0 * * Os_TE_299744 Chr5 15916703 15916702 - TRUNCATOR 2918 0.0025 (7/2852) 0 * Os_TE_299743 Os_TE_299743 Chr5 15916702 15916703 + TRUNCATOR 2918 0.0032 (9/2855) 0 * Os_TE_299744 Os_TE_299723 Chr5 15913078 15909699 - SZ-40LTR 2465 0.3749 (397/1059) 1 Intact Os_TE_299715 Os_TE_299715 Chr5 15909699 15913078 + GYPSY-A_LTR 8951 0.5290 (986/1864) 1 Solo_LTR Os_TE_299723 Os_TE_299693 Chr5 15904317 15904318 - TRUNCATOR 2918 0.0420 (115/2738) 0 * * Os_TE_299656 Chr5 15894316 15894317 - STOWAWAY50_OS 174 0.0014 (4/2828) 0 * * Os_TE_299648 Chr5 15891146 15891147 + COPIA1-LTR_OS 9292 0.0013 (4/2979) 0 * Os_TE_299647 Os_TE_299647 Chr5 15891142 15891141 - SZ-5LTR 1223 0.0013 (4/2976) 0 * Os_TE_299648 Os_TE_299625 Chr5 15883348 15883347 + ORSgTEMT01701115 144 0.0017 (5/2960) 0 * * Os_TE_299602 Chr5 15871085 15871084 + ORSgTEMT01400009 212 0.0010 (3/2944) 0 * * Os_TE_299591 Chr5 15868314 15868315 + ORSgTEMT01601934 207 0.0011 (3/2840) 0 * * Os_TE_299583 Chr5 15866677 15866678 - COPIA2-LTR_OS 6433 0.0003 (1/2943) 0 * Os_TE_299582 Os_TE_299582 Chr5 15866673 15866672 + COPIA2-LTR_OS 6433 0.0003 (1/2939) 0 * Os_TE_299583 Os_TE_299581 Chr5 15866095 15866094 + ORSgTEMT01602181 239 0.1604 (474/2956) 0 * * Os_TE_299579 Chr5 15865796 15865797 - RPO_OS 1983 0.0014 (4/2943) 0 * * Os_TE_299554 Chr5 15843767 15843768 + COPI2_LTR 4733 0.0003 (1/2929) 0 * Os_TE_299552 Os_TE_299552 Chr5 15843749 15843748 - CACTA-H 1152 0.0010 (3/2929) 0 * Os_TE_299554 Os_TE_299551 Chr5 15843743 15843744 + CACTA-D 1038 0.0017 (5/2907) 0 * * Os_TE_299519 Chr5 15828915 15824874 + RIRE3A_LTR 10580 0.0977 (289/2958) 1 Intact * Os_TE_299444 Chr5 15801595 15801596 - RIREX_LTR 8828 0.1201 (282/2348) 0 * Os_TE_299443 Os_TE_299443 Chr5 15801591 15801590 + RIREX_LTR 8828 0.1202 (283/2354) 0 * Os_TE_299444 Os_TE_299442 Chr5 15800994 15800995 + RIREX_LTR 8828 0.0013 (3/2367) 0 * Os_TE_299441 Os_TE_299441 Chr5 15800990 15800989 - RIREX_LTR 8828 0.0013 (3/2367) 0 * Os_TE_299442 Os_TE_299440 Chr5 15800801 15788743 + SPMLIKE 10989 0.1425 (339/2379) 1 Intact * Os_TE_299404 Chr5 15784272 15784271 - ORSgTETN00200001 10994 0.0829 (247/2979) 0 * * Os_TE_299402 Chr5 15782008 15782009 + SZ-9LTR 965 0.0010 (3/2937) 0 * * Os_TE_299396 Chr5 15781384 15781385 + ORSgTEMT01600726 235 0.0030 (9/2991) 0 * * Os_TE_299392 Chr5 15779278 15779279 - TYPEM 227 0.0004 (1/2653) 0 * * Os_TE_299378 Chr5 15767072 15767073 + STOWAWAY11_OS 292 0.0013 (4/2988) 0 * * Os_TE_299305 Chr5 15729238 15729239 - ORSgTEMT01602521 238 0.0013 (4/2985) 0 * * Os_TE_299301 Chr5 15726746 15726747 + NDNA1TNA_OS 334 0.0003 (1/2946) 0 * * Os_TE_299293 Chr5 15722122 15711141 - ORSgTETN00200001 10994 0.3244 (941/2901) 1 Intact Os_TE_299286 Os_TE_299286 Chr5 15711142 15722122 + SPMLIKE 10989 0.3470 (1031/2971) 1 Intact Os_TE_299293 Os_TE_299270 Chr5 15707118 15707117 - F569 228 0.0017 (5/2969) 0 * * Os_TE_299261 Chr5 15702648 15702649 + ORSgTEMT01602188 240 0.0013 (4/2980) 0 * * Os_TE_299245 Chr5 15696073 15696072 + NDNA1TNA_OS 334 0.0003 (1/2954) 0 * Os_TE_299244 Os_TE_299244 Chr5 15696072 15696073 - ORSgTEMT00100578 341 0.0003 (1/2960) 0 * Os_TE_299245 Os_TE_299234 Chr5 15694069 15694070 + SPMLIKE 10989 0.0104 (31/2988) 0 * Os_TE_299233 Os_TE_299233 Chr5 15694067 15694066 - ORSgTETN00200001 10994 0.0104 (31/2985) 0 * Os_TE_299234 Os_TE_299232 Chr5 15693989 15693990 + RIREX_LTR 8828 0.0993 (296/2982) 0 * * Os_TE_299224 Chr5 15690912 15690913 + NDNA1TNA_OS 334 0.2485 (739/2974) 0 * Os_TE_299223 Os_TE_299223 Chr5 15690911 15690910 + ORSgTEMT00101341 314 0.2370 (705/2975) 0 * Os_TE_299224 Os_TE_299217 Chr5 15689852 15689853 + COPIA2-LTR_OS 6433 0.0007 (2/2992) 0 * Os_TE_299216 Os_TE_299216 Chr5 15689848 15689847 - COPIA2-LTR_OS 6433 0.0007 (2/2990) 0 * Os_TE_299217 Os_TE_299215 Chr5 15689579 15689580 - NDNA1TNA_OS 334 0.0013 (4/2995) 0 * Os_TE_299214 Os_TE_299214 Chr5 15689577 15689576 + NDNA1TNA_OS 334 0.0013 (4/2998) 0 * Os_TE_299215 Os_TE_299213 Chr5 15689462 15689461 - ORSgTEMT01400033 210 0.0017 (5/2991) 0 * Os_TE_299212 Os_TE_299212 Chr5 15689459 15689460 - ORSgTEMT01400033 210 0.0020 (6/2998) 0 * Os_TE_299213 Os_TE_299196 Chr5 15680196 15680197 + MuDR4_OS 7610 0.3000 (854/2847) 0 * Os_TE_299195 Os_TE_299195 Chr5 15680190 15680189 + MuDR4_OS 7610 0.3000 (859/2863) 0 * Os_TE_299196 Os_TE_299194 Chr5 15679356 15679357 - SZ-62LTR 3649 0.0040 (12/2995) 0 * Os_TE_299193 Os_TE_299193 Chr5 15679352 15679351 + SZ-62LTR 3649 0.0037 (11/2993) 0 * Os_TE_299194 Os_TE_299192 Chr5 15679256 15679255 + TRUNCATOR 2918 0.4266 (1276/2991) 0 * * Os_TE_299189 Chr5 15679131 15679130 - TRUNCATOR 2918 0.3757 (1061/2824) 0 * * Os_TE_299180 Chr5 15677200 15677201 - ORSgTEMT00600192 355 0.0003 (1/2934) 0 * * Os_TE_299161 Chr5 15657829 15657828 - SC-3_LTR 5748 0.0007 (2/2979) 0 * * Os_TE_299156 Chr5 15655495 15655494 - COPIA2-LTR_OS 6433 0.0003 (1/2954) 0 * * Os_TE_299150 Chr5 15653981 15653980 + RIREX_LTR 8828 0.0003 (1/2892) 0 * * Os_TE_299143 Chr5 15652222 15652221 - MPING 430 0.0003 (1/2960) 0 * * Os_TE_299141 Chr5 15651220 15651221 + ORSiTERTOOT00291 11421 0.0022 (6/2764) 0 * * Os_TE_299136 Chr5 15650152 15650151 - CLOUD-2 711 0.0017 (5/2896) 0 * * Os_TE_299091 Chr5 15606476 15604226 + ORSiCMCM00100019 2717 0.0996 (296/2973) 1 Intact * Os_TE_299085 Chr5 15603417 15603418 - AMYLTP 383 0.0065 (19/2915) 0 * Os_TE_299084 Os_TE_299084 Chr5 15603409 15603408 + AMYLTP 383 0.0065 (19/2914) 0 * Os_TE_299085 Os_TE_299055 Chr5 15589757 15589758 - GYPSY-A_LTR 8951 0.0040 (12/2992) 0 * Os_TE_299054 Os_TE_299054 Chr5 15589753 15589752 + GYPSY-A_LTR 8951 0.0037 (11/2991) 0 * Os_TE_299055 Os_TE_299031 Chr5 15583222 15583223 - ORSgTEMT00101341 314 0.0017 (5/2988) 0 * Os_TE_299030 Os_TE_299030 Chr5 15583221 15583220 + ORSgTETNOOT00701 277 0.0017 (5/2991) 0 * Os_TE_299031 Os_TE_299025 Chr5 15581622 15581623 - SZ-5LTR 1223 0.0014 (4/2955) 0 * * Os_TE_299023 Chr5 15581218 15581219 + ORSgTETNOOT01275 140 0.0017 (5/2913) 0 * Os_TE_299022 Os_TE_299022 Chr5 15581216 15581215 - ORSgTETNOOT00544 147 0.0014 (4/2927) 0 * Os_TE_299023 Os_TE_299008 Chr5 15579667 15579668 - ORSiTEMT06000031 317 0.0004 (1/2856) 0 * * Os_TE_299001 Chr5 15578617 15578618 + ORSiCMCM00100019 2717 0.0007 (2/2990) 0 * Os_TE_299000 Os_TE_299000 Chr5 15578613 15578612 - TRUNCATOR2_LTR 2904 0.0007 (2/2994) 0 * Os_TE_299001 Os_TE_298999 Chr5 15578263 15578264 + COPI2_LTR 4733 0.0003 (1/2992) 0 * Os_TE_298998 Os_TE_298998 Chr5 15578259 15578258 - COPI2_LTR 4733 0.0003 (1/2990) 0 * Os_TE_298999 Os_TE_298968 Chr5 15566556 15566555 - SZ-44LTR 1408 0.0017 (5/2984) 0 * * Os_TE_298951 Chr5 15553458 15553459 + RETROFIT7_LTR 4788 0.0900 (270/2999) 0 * Os_TE_298950 Os_TE_298950 Chr5 15553454 15553453 - RETROFIT7_LTR 4788 0.0911 (273/2998) 0 * Os_TE_298951 Os_TE_298945 Chr5 15552109 15547825 - RETROSAT2LTR 12796 0.1032 (309/2995) 1 Intact * Os_TE_298942 Chr5 15547766 15544348 - TRUNCATOR2_LTR 2904 0.3449 (1028/2981) 1 Intact Os_TE_298939 Os_TE_298939 Chr5 15544348 15547766 + ORSiCMCM00100019 2717 0.3329 (985/2959) 1 Intact Os_TE_298942 Os_TE_298876 Chr5 15514845 15514846 + COPIA2-LTR_OS 6433 0.0007 (2/2992) 0 * Os_TE_298875 Os_TE_298875 Chr5 15514841 15514840 - COPIA2-LTR_OS 6433 0.0017 (2/1183) 0 * Os_TE_298876 Os_TE_298811 Chr5 15491260 15489971 + ORSgTETN00200005 1121 0.3470 (1030/2968) 1 Intact * Os_TE_298806 Chr5 15488469 15488468 - MPING 430 0.0003 (1/2985) 0 * Os_TE_298805 Os_TE_298805 Chr5 15488459 15488460 + MPING 430 0.0003 (1/2990) 0 * Os_TE_298806 Os_TE_298796 Chr5 15481355 15481354 - MuDR4_OS 7610 0.6291 (1883/2993) 0 * * Os_TE_298795 Chr5 15480741 15472908 - RIREX_LTR 8828 0.1036 (310/2992) 1 Intact Os_TE_298794 Os_TE_298794 Chr5 15472908 15480741 + RIREX_LTR 8828 0.1033 (309/2990) 1 Intact Os_TE_298795 Os_TE_298421 Chr5 15265158 15254633 + TRUNCATOR 2918 0.3511 (1027/2925) 1 Intact * Os_TE_298380 Chr5 15245060 15245059 + TRUNCATOR 2918 0.0013 (4/2982) 0 * * Os_TE_298318 Chr5 15223092 15223093 + RIRE3A_LTR 10580 0.0003 (1/2984) 0 * * Os_TE_298298 Chr5 15215378 15215154 - ORSgTEMT02400246 177 0.6906 (1018/1474) 1 Intact Os_TE_298296 Os_TE_298296 Chr5 15215154 15215378 - ORSgTEMT02400092 225 0.6987 (1053/1507) 1 Intact Os_TE_298298 Os_TE_298295 Chr5 15215016 15215017 - RIRE2_LTR 11306 0.4941 (748/1514) 0 * Os_TE_298294 Os_TE_298294 Chr5 15215012 15215011 - ORSgTERT00201216 11284 0.4883 (732/1499) 0 * Os_TE_298295 Os_TE_298293 Chr5 15214966 15214967 + SPMLIKE 10989 0.1211 (207/1710) 0 * * Os_TE_298285 Chr5 15210337 15210338 + OSTONOR1_LTR 6440 0.0023 (4/1711) 0 * Os_TE_298284 Os_TE_298284 Chr5 15210333 15210332 - ORSiTERT00100062 5674 0.0023 (4/1715) 0 * Os_TE_298285 Os_TE_298261 Chr5 15198480 15198479 - ORSgTETN00200001 10994 0.4539 (713/1571) 0 * * Os_TE_298257 Chr5 15198133 15198134 - RIREX_LTR 8828 0.4653 (745/1601) 0 * * Os_TE_298211 Chr5 15167623 15167622 + COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * * Os_TE_298201 Chr5 15162353 15162352 - ORSiTERT00200154 9386 0.0666 (199/2989) 0 * * Os_TE_298175 Chr5 15137480 15137479 - TRUNCATOR2_LTR 2904 0.0762 (225/2952) 0 * * Os_TE_298125 Chr5 15095126 15095127 + MuDR3_OS 8604 0.0768 (229/2983) 0 * Os_TE_298124 Os_TE_298124 Chr5 15095117 15095116 - MuDR3_OS 8604 0.0707 (209/2957) 0 * Os_TE_298125 Os_TE_298114 Chr5 15087745 15087744 - OSR3_LTR 5201 0.0003 (1/2991) 0 * * Os_TE_298100 Chr5 15081396 15081397 + COPIA2-LTR_OS 6433 0.0004 (1/2649) 0 * * Os_TE_298096 Chr5 15080833 15080834 + TRUNCATOR2_LTR 2904 0.0808 (241/2983) 0 * Os_TE_298095 Os_TE_298095 Chr5 15080829 15080828 - TRUNCATOR2_LTR 2904 0.0848 (254/2997) 0 * Os_TE_298096 Os_TE_298090 Chr5 15076332 15076333 + RPO_OS 1983 0.2260 (645/2854) 0 * * Os_TE_298075 Chr5 15073596 15073595 + ORSgTEMT01701663 106 0.0013 (4/2987) 0 * Os_TE_298074 Os_TE_298074 Chr5 15073593 15073594 + ORSgTEMT01700012 149 0.0013 (4/2988) 0 * Os_TE_298075 Os_TE_298070 Chr5 15071672 15071673 - ORSgTEMT02400179 221 0.0014 (4/2960) 0 * Os_TE_298069 Os_TE_298069 Chr5 15071671 15071670 - TYPEM 227 0.0017 (5/2987) 0 * Os_TE_298070 Os_TE_298068 Chr5 15071603 15071604 + NDNA1TNA_OS 334 0.3323 (551/1658) 0 * Os_TE_298067 Os_TE_298067 Chr5 15071601 15071600 - NDNA1TNA_OS 334 0.3361 (560/1666) 0 * Os_TE_298068 Os_TE_298066 Chr5 15070209 15070210 + COPI2_LTR 4733 0.0017 (5/2998) 0 * Os_TE_298065 Os_TE_298065 Chr5 15070205 15070204 - COPI2_LTR 4733 0.0017 (5/2996) 0 * Os_TE_298066 Os_TE_298054 Chr5 15066210 15066211 + ORSiCMCM00100019 2717 0.0003 (1/2988) 0 * Os_TE_298053 Os_TE_298053 Chr5 15066206 15066205 - TRUNCATOR2_LTR 2904 0.0003 (1/2987) 0 * Os_TE_298054 Os_TE_298050 Chr5 15062312 15062311 + STOWAWAY1_OS 149 0.0010 (3/2973) 0 * Os_TE_298049 Os_TE_298049 Chr5 15062305 15062306 + ORSgTEMT01701224 156 0.0013 (4/2992) 0 * Os_TE_298050 Os_TE_298036 Chr5 15056397 15056396 - RPO_OS 1983 0.0013 (4/2995) 0 * * Os_TE_297993 Chr5 15040773 15040772 + TWIFB1 3737 0.0004 (1/2727) 0 * * Os_TE_297960 Chr5 15027024 15027025 + TRUNCATOR 2918 0.5614 (1663/2962) 0 * Os_TE_297959 Os_TE_297959 Chr5 15027018 15027017 - ORSiTERT00200154 9386 0.5239 (1460/2787) 0 * Os_TE_297960 Os_TE_297953 Chr5 15024891 15024892 + ORSgTEMT01700820 150 0.0042 (12/2888) 0 * * Os_TE_297952 Chr5 15024307 15024306 - ORSgTEMT01700216 124 0.0040 (12/2986) 0 * * Os_TE_297948 Chr5 15023945 15023946 + STOWAWAY1_OS 149 0.0040 (12/2995) 0 * * Os_TE_297947 Chr5 15023370 15023371 + COPIA1-LTR_OS 9292 0.0044 (13/2971) 0 * * Os_TE_297945 Chr5 15023101 15023100 - GYPSY1-LTR_OS 8900 0.0047 (14/2987) 0 * * Os_TE_297940 Chr5 15021624 15021625 - ORSgTEMT00502154 143 0.0044 (13/2952) 0 * * Os_TE_297925 Chr5 15007390 15007391 + TESS 244 0.0041 (12/2951) 0 * * Os_TE_297917 Chr5 15003475 15003476 - STOWAWAY1_OS 149 0.0040 (12/2982) 0 * * Os_TE_297894 Chr5 15000808 15000807 - TRUNCATOR 2918 0.0040 (12/2995) 0 * Os_TE_297893 Os_TE_297893 Chr5 15000807 15000808 + TRUNCATOR 2918 0.0040 (12/2996) 0 * Os_TE_297894 Os_TE_297889 Chr5 14997139 14997140 - ORSgTEMT03800066 376 0.0042 (12/2887) 0 * * Os_TE_297861 Chr5 14993784 14993783 + ORSgTEMT00900266 245 0.0034 (10/2976) 0 * Os_TE_297860 Os_TE_297860 Chr5 14993783 14993784 + ORSgTEMT00901862 245 0.0044 (13/2984) 0 * Os_TE_297861 Os_TE_297854 Chr5 14992060 14992291 + ORSgTETNOOT00012 241 0.3109 (928/2985) 1 Intact * Os_TE_297833 Chr5 14985588 14985587 - NDNA1TNA_OS 334 0.0009 (2/2248) 0 * * Os_TE_297832 Chr5 14984311 14984312 + ORSgTEMT00100986 341 0.0040 (12/2981) 0 * * Os_TE_297734 Chr5 14944776 14944777 - RIREX_LTR 8828 0.1174 (348/2965) 0 * Os_TE_297733 Os_TE_297733 Chr5 14944772 14944771 + RIREX_LTR 8828 0.1186 (352/2967) 0 * Os_TE_297734 Os_TE_297684 Chr5 14933891 14933115 + MUDRN1_OS 764 0.3069 (898/2926) 1 Intact * Os_TE_297681 Chr5 14932821 14932820 + AMYLTP 383 0.0040 (12/2981) 0 * * Os_TE_297678 Chr5 14932042 14932043 + INDITTO 263 0.0030 (9/2967) 0 * Os_TE_297677 Os_TE_297677 Chr5 14932040 14932039 - INDITTO 263 0.0030 (9/2961) 0 * Os_TE_297678 Os_TE_297667 Chr5 14928415 14928416 + SC-8_LTR 4951 0.0718 (214/2981) 0 * * Os_TE_297639 Chr5 14915991 14911005 - SZ-48LTR 3632 0.2654 (779/2935) 1 Intact Os_TE_297632 Os_TE_297632 Chr5 14911005 14915991 + SZ-48LTR 3632 0.2551 (744/2917) 1 Intact Os_TE_297639 Os_TE_297631 Chr5 14909711 14909712 + COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * Os_TE_297630 Os_TE_297630 Chr5 14909707 14909706 - COPIA2-LTR_OS 6433 0.0007 (2/2988) 0 * Os_TE_297631 Os_TE_297629 Chr5 14908652 14908653 + TESS 244 0.0027 (8/2921) 0 * Os_TE_297628 Os_TE_297628 Chr5 14908645 14908644 - TESS 244 0.0027 (8/2923) 0 * Os_TE_297629 Os_TE_297619 Chr5 14905552 14905551 - INDITTO 263 0.0024 (7/2956) 0 * * Os_TE_297618 Chr5 14905235 14905236 - SZ-22_LTR 4403 0.0007 (2/2972) 0 * Os_TE_297617 Os_TE_297617 Chr5 14905231 14905230 + ORSiTERTOOT00226 792 0.0007 (2/2966) 0 * Os_TE_297618 Os_TE_297609 Chr5 14903362 14903363 + ORSgTEMT00600229 360 0.6543 (1946/2974) 0 * Os_TE_297608 Os_TE_297608 Chr5 14903359 14903358 - CASTAWAY 364 0.6510 (1938/2977) 0 * Os_TE_297609 Os_TE_297578 Chr5 14894392 14894391 - TYPEM 227 0.0003 (1/2991) 0 * * Os_TE_297575 Chr5 14892291 14892292 + ORSiTERTOOT00226 792 0.0003 (1/2998) 0 * * Os_TE_297554 Chr5 14879239 14879240 - STOWAWAY51_OS 246 0.0060 (17/2849) 0 * * Os_TE_297507 Chr5 14859038 14859037 - TRUNCATOR 2918 0.0074 (22/2962) 0 * Os_TE_297506 Os_TE_297506 Chr5 14859037 14859038 + TRUNCATOR 2918 0.0071 (21/2967) 0 * Os_TE_297507 Os_TE_297485 Chr5 14853460 14853461 - SZ-25LTR 330 0.0020 (6/2946) 0 * * Os_TE_297473 Chr5 14847036 14847035 + COPIA2-LTR_OS 6433 0.0688 (165/2400) 0 * * Os_TE_297397 Chr5 14821678 14821679 - TYPEU1 380 0.0020 (6/2970) 0 * Os_TE_297396 Os_TE_297396 Chr5 14821670 14821669 + TYPEU4 402 0.0020 (6/2971) 0 * Os_TE_297397 Os_TE_297386 Chr5 14818717 14818718 - ORSgTEMT01600244 239 0.0074 (21/2846) 0 * * Os_TE_297383 Chr5 14817108 14817109 - ORSgTEMT01600639 228 0.0020 (6/2997) 0 * * Os_TE_297381 Chr5 14816658 14816657 - COPIA2-LTR_OS 6433 0.0007 (2/2994) 0 * * Os_TE_297373 Chr5 14815088 14815089 - MPING 430 0.0003 (1/2970) 0 * Os_TE_297372 Os_TE_297372 Chr5 14815086 14815085 + MPING 430 0.0003 (1/2975) 0 * Os_TE_297373 Os_TE_297364 Chr5 14814440 14814441 - MERMITEH 1307 0.0080 (24/2982) 0 * Os_TE_297363 Os_TE_297363 Chr5 14814435 14814434 - MERMITED 1572 0.0077 (23/2983) 0 * Os_TE_297364 Os_TE_297359 Chr5 14812057 14812058 - INDITTO 263 0.0023 (7/2994) 0 * Os_TE_297358 Os_TE_297358 Chr5 14812055 14812054 + INDITTO 263 0.0023 (7/2994) 0 * Os_TE_297359 Os_TE_297339 Chr5 14798832 14798831 - F524 291 0.0084 (25/2984) 0 * * Os_TE_297334 Chr5 14795398 14795399 - COPI2_LTR 4733 0.0003 (1/2986) 0 * Os_TE_297333 Os_TE_297333 Chr5 14795394 14795393 + COPI2_LTR 4733 0.0003 (1/2993) 0 * Os_TE_297334 Os_TE_297331 Chr5 14795136 14795135 - ORSgTEMT00501731 144 0.0740 (222/2999) 0 * Os_TE_297330 Os_TE_297330 Chr5 14795122 14795123 - ORSgTEMT00500321 149 0.0734 (219/2985) 0 * Os_TE_297331 Os_TE_297324 Chr5 14793254 14793255 + OSTE15 1168 0.0764 (227/2973) 0 * * Os_TE_297316 Chr5 14790020 14790021 - SC-3_LTR 5748 0.0010 (3/2987) 0 * * Os_TE_297315 Chr5 14789504 14789503 + ORSgTETNOOT01219 231 0.0017 (5/2989) 0 * Os_TE_297314 Os_TE_297314 Chr5 14789502 14789503 + ORSgTETNOOT00908 242 0.0017 (5/2990) 0 * Os_TE_297315 Os_TE_297311 Chr5 14789282 14789281 + TRUNCATOR 2918 0.0047 (14/2996) 0 * Os_TE_297310 Os_TE_297310 Chr5 14789281 14789282 - TRUNCATOR 2918 0.0050 (15/2989) 0 * Os_TE_297311 Os_TE_297299 Chr5 14784876 14784877 + SZ-30_LTR 6377 0.0063 (19/2996) 0 * Os_TE_297298 Os_TE_297298 Chr5 14784872 14784871 - SZ-30_LTR 6377 0.0063 (19/2994) 0 * Os_TE_297299 Os_TE_297260 Chr5 14772846 14772847 - DITAILA 257 0.0117 (17/1453) 0 * * Os_TE_297234 Chr5 14756351 14756350 + ENSPM_OS 9843 0.0057 (17/2968) 0 * * Os_TE_297226 Chr5 14751429 14751430 - HARB-1_OS 5166 0.0020 (6/2979) 0 * Os_TE_297225 Os_TE_297225 Chr5 14751427 14751426 + HARB-1_OS 5166 0.0017 (5/2977) 0 * Os_TE_297226 Os_TE_297219 Chr5 14748859 14748615 + STOWAWAY51_OS 246 0.3564 (1056/2963) 1 Intact Os_TE_297218 Os_TE_297218 Chr5 14748612 14748856 + STOWAWAY51_OS 246 0.3687 (1096/2973) 1 Intact Os_TE_297219 Os_TE_297205 Chr5 14744218 14744217 + RIREX_LTR 8828 0.0017 (5/2966) 0 * * Os_TE_297163 Chr5 14736027 14736028 + OSR42_LTR 5605 0.0251 (75/2987) 0 * Os_TE_297162 Os_TE_297162 Chr5 14736023 14736022 - OSR42_LTR 5605 0.0251 (75/2989) 0 * Os_TE_297163 Os_TE_297160 Chr5 14734445 14734444 + ORSiTERTOOT00226 792 0.0027 (8/2996) 0 * * Os_TE_297086 Chr5 14696149 14696150 + ORSiTERTOOT00296 5553 0.0020 (6/2958) 0 * Os_TE_297085 Os_TE_297085 Chr5 14696145 14696144 - SC-3_LTR 5748 0.0020 (6/2954) 0 * Os_TE_297086 Os_TE_297078 Chr5 14691598 14691599 + ORSiTERTOOT00296 5553 0.0003 (1/2999) 0 * Os_TE_297077 Os_TE_297077 Chr5 14691594 14691593 - SC-3_LTR 5748 0.0003 (1/2998) 0 * Os_TE_297078 Os_TE_297068 Chr5 14687255 14687254 - TRUNCATOR 2918 0.5254 (1570/2988) 0 * Os_TE_297067 Os_TE_297067 Chr5 14687254 14687255 + TRUNCATOR 2918 0.5277 (1582/2998) 0 * Os_TE_297068 Os_TE_297036 Chr5 14670592 14670591 - STOWAWAY51_OS 246 0.0010 (3/2995) 0 * Os_TE_297035 Os_TE_297035 Chr5 14670589 14670590 - STOWAWAY51_OS 246 0.0010 (3/2994) 0 * Os_TE_297036 Os_TE_296988 Chr5 14656153 14656152 - SETARIA 1402 0.2208 (70/317) -1 * * Os_TE_296948 Chr5 14651690 14651689 - FOCUS 257 0.0003 (1/2997) 0 * * Os_TE_296922 Chr5 14648078 14648079 - RETRO2_LTR 12874 0.0480 (140/2919) 0 * Os_TE_296921 Os_TE_296921 Chr5 14648074 14648073 + RETRO2A_LTR 12895 0.0477 (140/2937) 0 * Os_TE_296922 Os_TE_296906 Chr5 14642565 14642566 + INDITTO 263 0.0057 (17/2982) 0 * Os_TE_296905 Os_TE_296905 Chr5 14642563 14642562 - INDITTO 263 0.0050 (15/2979) 0 * Os_TE_296906 Os_TE_296855 Chr5 14627654 14627655 - DNAUN1_OS 408 0.0003 (1/2917) 0 * * Os_TE_296819 Chr5 14614245 14614246 + TWIFBIG 3567 0.0047 (14/2995) 0 * Os_TE_296818 Os_TE_296818 Chr5 14614238 14614237 - ORSiTETNOOT00200 3563 0.0047 (14/2992) 0 * Os_TE_296819 Os_TE_296791 Chr5 14597319 14597320 + CASBIG 811 0.0013 (4/2964) 0 * * Os_TE_296790 Chr5 14596364 14596365 - SZ-9LTR 965 0.0280 (83/2965) 0 * Os_TE_296789 Os_TE_296789 Chr5 14596360 14596359 + SZ-9LTR 965 0.0267 (79/2963) 0 * Os_TE_296790 Os_TE_296787 Chr5 14596029 14596030 - RETRO1_LTR 8314 0.0010 (3/2962) 0 * Os_TE_296786 Os_TE_296786 Chr5 14596025 14596024 + RETRO1_LTR 8314 0.0010 (3/2971) 0 * Os_TE_296787 Os_TE_296743 Chr5 14565980 14565981 - RIRE3_LTR 12054 0.0141 (40/2829) 0 * Os_TE_296742 Os_TE_296742 Chr5 14565976 14565975 + RIRE3_LTR 12054 0.0074 (21/2856) 0 * Os_TE_296743 Os_TE_296608 Chr5 14533465 14533464 - COPI2_LTR 4733 0.0007 (2/2945) 0 * * Os_TE_296573 Chr5 14519384 14519383 + RIRE3_LTR 12054 0.0003 (1/2965) 0 * * Os_TE_296540 Chr5 14506877 14506876 + TNR2A 152 0.6538 (1866/2854) 0 * * Os_TE_296535 Chr5 14501204 14501205 - SC-3_LTR 5748 0.0003 (1/2991) 0 * Os_TE_296534 Os_TE_296534 Chr5 14501200 14501199 + ORSiTERTOOT00296 5553 0.0003 (1/2994) 0 * Os_TE_296535 Os_TE_296532 Chr5 14499855 14499854 + TRUNCATOR 2918 0.0013 (4/2990) 0 * Os_TE_296531 Os_TE_296531 Chr5 14499854 14499855 - TRUNCATOR 2918 0.0010 (3/2982) 0 * Os_TE_296532 Os_TE_296530 Chr5 14498747 14498748 - NDNA1TNA_OS 334 0.0030 (9/2994) 0 * Os_TE_296529 Os_TE_296529 Chr5 14498745 14498744 + NDNA1TNA_OS 334 0.0030 (9/2994) 0 * Os_TE_296530 Os_TE_296518 Chr5 14489622 14489623 + ENSPM6_OS 9815 0.0030 (9/2997) 0 * Os_TE_296517 Os_TE_296517 Chr5 14489620 14489619 - ENSPM5_OS 9581 0.0030 (9/2995) 0 * Os_TE_296518 Os_TE_296516 Chr5 14489552 14489553 - RIREX_LTR 8828 0.0003 (1/2995) 0 * Os_TE_296515 Os_TE_296515 Chr5 14489548 14489547 + RIREX_LTR 8828 0.0003 (1/2996) 0 * Os_TE_296516 Os_TE_296506 Chr5 14469756 14469757 + OSTE33 1012 0.0027 (8/2997) 0 * * Os_TE_296489 Chr5 14460678 14460679 + RETRO2_LTR 12874 0.0017 (5/2985) 0 * * Os_TE_296487 Chr5 14460555 14460556 - RIRE3A_LTR 10580 0.0030 (9/2994) 0 * Os_TE_296486 Os_TE_296486 Chr5 14460551 14460550 + ORSiTERTOOT00027 10853 0.0020 (6/2992) 0 * Os_TE_296487 Os_TE_296476 Chr5 14454529 14454530 + TRUNCATOR 2918 0.0010 (3/2979) 0 * * Os_TE_296433 Chr5 14434109 14434108 + STOWAWAY51_OS 246 0.0003 (1/2987) 0 * * Os_TE_296431 Chr5 14433387 14433388 - RETROSAT2LTR 12796 0.0032 (8/2483) 0 * * Os_TE_296405 Chr5 14411812 14411811 + ORSiRGRR00000001 280 0.0003 (1/2990) 0 * * Os_TE_296312 Chr5 14377178 14377179 - RIREX_LTR 8828 0.0007 (2/2984) 0 * * Os_TE_296270 Chr5 14370875 14370876 - TRUNCATOR2_LTR 2904 0.0020 (6/2987) 0 * * Os_TE_296266 Chr5 14367700 14367701 + ORSgTETNOOT00707 140 0.0013 (4/2986) 0 * * Os_TE_296248 Chr5 14360712 14360711 - COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * * Os_TE_296224 Chr5 14350779 14350778 - MuDR4_OS 7610 0.0270 (79/2927) 0 * * Os_TE_296222 Chr5 14348650 14348651 - OSTONOR1_LTR 6440 0.0284 (84/2958) 0 * Os_TE_296221 Os_TE_296221 Chr5 14348646 14348645 + OSTONOR1_LTR 6440 0.0290 (86/2963) 0 * Os_TE_296222 Os_TE_296212 Chr5 14345553 14345552 - ORSgTETN00200001 10994 0.0054 (16/2983) 0 * * Os_TE_296208 Chr5 14345075 14345074 - RETROSAT2LTR 12796 0.0137 (40/2928) 0 * * Os_TE_296100 Chr5 14299640 14299639 + ORSiTERTOOT00296 5553 0.0020 (6/2991) 0 * * Os_TE_296013 Chr5 14278346 14278347 + RIREX_LTR 8828 0.0010 (3/2991) 0 * Os_TE_296012 Os_TE_296012 Chr5 14278342 14278341 - RIREX_LTR 8828 0.0010 (3/2996) 0 * Os_TE_296013 Os_TE_295991 Chr5 14269648 14269649 - RIREX_LTR 8828 0.0013 (4/2968) 0 * * Os_TE_295988 Chr5 14268067 14268068 + RIRE2_LTR 11306 0.0010 (3/2998) 0 * * Os_TE_295976 Chr5 14265552 14265551 + RETRO1_LTR 8314 0.0010 (3/2989) 0 * * Os_TE_295974 Chr5 14265007 14265008 - RETROSAT2LTR 12796 0.0030 (9/2998) 0 * Os_TE_295973 Os_TE_295973 Chr5 14265005 14265004 + RETROSAT2LTR 12796 0.0030 (9/2998) 0 * Os_TE_295974 Os_TE_295954 Chr5 14254560 14254561 - RETROSAT2LTR 12796 0.0030 (9/2992) 0 * Os_TE_295953 Os_TE_295953 Chr5 14254558 14254557 + RETROSAT2LTR 12796 0.0030 (9/2990) 0 * Os_TE_295954 Os_TE_295946 Chr5 14251549 14251550 - AMYLTP 383 0.0010 (3/2954) 0 * Os_TE_295945 Os_TE_295945 Chr5 14251541 14251540 + AMYLTP 383 0.0014 (4/2959) 0 * Os_TE_295946 Os_TE_295934 Chr5 14249003 14249002 + ORSgTEMT00101674 340 0.0030 (9/2953) 0 * Os_TE_295933 Os_TE_295933 Chr5 14248998 14248999 + NDNA1TNA_OS 334 0.0031 (9/2879) 0 * Os_TE_295934 Os_TE_295930 Chr5 14248572 14248571 - CRATA 4786 0.2475 (686/2772) 0 * * Os_TE_295923 Chr5 14247586 14247587 - ORSgTETN00200001 10994 0.0007 (2/2984) 0 * Os_TE_295922 Os_TE_295922 Chr5 14247584 14247583 + SPMLIKE 10989 0.0010 (3/2981) 0 * Os_TE_295923 Os_TE_295907 Chr5 14241292 14241293 + COPIA2-LTR_OS 6433 0.0003 (1/2984) 0 * Os_TE_295906 Os_TE_295906 Chr5 14241288 14241287 - COPIA2-LTR_OS 6433 0.0007 (2/2984) 0 * Os_TE_295907 Os_TE_295896 Chr5 14238960 14238959 + RETRO2_LTR 12874 0.0131 (38/2895) 0 * * Os_TE_295887 Chr5 14237513 14237512 - ORSiTETNOOT00107 906 0.5362 (1577/2941) 0 * Os_TE_295886 Os_TE_295886 Chr5 14237509 14237510 + ORSiTETNOOT00107 906 0.5415 (1599/2953) 0 * Os_TE_295887 Os_TE_295871 Chr5 14231465 14231466 - TRUNCATOR 2918 0.0127 (38/2988) 0 * * Os_TE_295870 Chr5 14231353 14231354 - AMYLTP 383 0.0007 (2/2982) 0 * Os_TE_295869 Os_TE_295869 Chr5 14231345 14231344 + AMYLTP 383 0.0010 (3/2981) 0 * Os_TE_295870 Os_TE_295868 Chr5 14230477 14230478 - OSLINE1-2 7128 0.0003 (1/2964) 0 * * Os_TE_295853 Chr5 14216230 14216231 + SPMLIKE 10989 0.5347 (1596/2985) 0 * Os_TE_295852 Os_TE_295852 Chr5 14216228 14216227 - ORSgTETN00200001 10994 0.5213 (1530/2935) 0 * Os_TE_295853 Os_TE_295850 Chr5 14215934 14215935 + RIREX_LTR 8828 0.2782 (827/2973) 0 * Os_TE_295849 Os_TE_295849 Chr5 14215930 14215929 - RIREX_LTR 8828 0.2774 (824/2970) 0 * Os_TE_295850 Os_TE_295847 Chr5 14213384 14213385 + COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_295846 Os_TE_295846 Chr5 14213380 14213379 - COPIA2-LTR_OS 6433 0.0003 (1/2983) 0 * Os_TE_295847 Os_TE_295844 Chr5 14212779 14212778 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * * Os_TE_295840 Chr5 14208317 14208318 + COPIA2-LTR_OS 6433 0.0007 (2/2988) 0 * Os_TE_295839 Os_TE_295839 Chr5 14208313 14208312 - COPIA2-LTR_OS 6433 0.0007 (2/2990) 0 * Os_TE_295840 Os_TE_295838 Chr5 14207969 14207968 + TRUNCATOR 2918 0.0869 (260/2993) 0 * Os_TE_295837 Os_TE_295837 Chr5 14207968 14207969 - TRUNCATOR 2918 0.0860 (257/2990) 0 * Os_TE_295838 Os_TE_295829 Chr5 14206389 14206390 - RIRE2_LTR 11306 0.0263 (78/2968) 0 * Os_TE_295828 Os_TE_295828 Chr5 14206385 14206384 + RIREX_LTR 8828 0.0272 (81/2976) 0 * Os_TE_295829 Os_TE_295827 Chr5 14206217 14206218 - RIRE2_LTR 11306 0.0013 (4/2983) 0 * Os_TE_295826 Os_TE_295826 Chr5 14206213 14206212 + RIRE2_LTR 11306 0.0010 (3/2980) 0 * Os_TE_295827 Os_TE_295802 Chr5 14190543 14190544 + TRUNCATOR 2918 0.0040 (6/1499) -1 * * Os_TE_295799 Chr5 14187227 14187226 - STOWAWAY43_OS 233 0.0017 (5/2992) 0 * * Os_TE_295760 Chr5 14170650 14170649 + ORSiTERTOOT00028 8600 0.0149 (44/2962) 0 * * Os_TE_295748 Chr5 14161268 14161267 + ORSgTETNOOT00908 242 0.0010 (3/2974) 0 * * Os_TE_295683 Chr5 14139924 14139923 + OSTE15 1168 0.0025 (7/2833) 0 * * Os_TE_295653 Chr5 14134490 14134489 - RIRE3_LTR 12054 0.0397 (39/983) 0 * * Os_TE_295544 Chr5 14076360 14076361 - TRUNCATOR 2918 0.0031 (9/2940) 0 * * Os_TE_295413 Chr5 14032621 14032620 + TRUNCATOR 2918 0.0140 (41/2939) 0 * * Os_TE_295339 Chr5 14017789 14017788 - TRUNCATOR 2918 0.2914 (872/2992) 0 * Os_TE_295338 Os_TE_295338 Chr5 14017788 14017789 + TRUNCATOR 2918 0.3061 (882/2881) 0 * Os_TE_295339 Os_TE_295337 Chr5 14017760 14017761 + RIREX_LTR 8828 0.4672 (1396/2988) 0 * Os_TE_295336 Os_TE_295336 Chr5 14017756 14017755 - RIREX_LTR 8828 0.4845 (1403/2896) 0 * Os_TE_295337 Os_TE_295334 Chr5 14017506 14017505 - CLOUD 734 0.0010 (3/2988) 0 * * Os_TE_295321 Chr5 14014786 14014787 + COPIA2-LTR_OS 6433 0.0003 (1/2905) 0 * Os_TE_295320 Os_TE_295320 Chr5 14014782 14014781 - COPIA2-LTR_OS 6433 0.0003 (1/2903) 0 * Os_TE_295321 Os_TE_295295 Chr5 14004969 14004968 + TRUNCATOR2_LTR 2904 0.2900 (863/2976) 0 * * Os_TE_295294 Chr5 14004867 14004868 + SPMLIKE 10989 0.0030 (9/2991) 0 * Os_TE_295293 Os_TE_295293 Chr5 14004865 14004864 - ORSgTETN00200001 10994 0.0030 (9/2989) 0 * Os_TE_295294 Os_TE_295273 Chr5 13993150 13993151 - COPI2_LTR 4733 0.0010 (3/2982) 0 * Os_TE_295272 Os_TE_295272 Chr5 13993146 13993145 + COPI2_LTR 4733 0.0010 (3/2982) 0 * Os_TE_295273 Os_TE_295247 Chr5 13984743 13984744 - TYPEU1 380 0.0134 (40/2987) 0 * Os_TE_295246 Os_TE_295246 Chr5 13984735 13984734 + TYPEU4 402 0.0131 (39/2987) 0 * Os_TE_295247 Os_TE_295136 Chr5 13938850 13938851 + AMYLTP 383 0.3012 (894/2968) 0 * * Os_TE_295099 Chr5 13932774 13932775 + TWIF 586 0.1172 (251/2142) 0 * Os_TE_295098 Os_TE_295098 Chr5 13932767 13932766 - ORSiTETNOOT00134 607 0.0650 (187/2875) 0 * Os_TE_295099 Os_TE_295091 Chr5 13922250 13922251 + MPING 430 0.0010 (3/2955) 0 * Os_TE_295090 Os_TE_295090 Chr5 13922248 13922247 - MPING 430 0.0007 (2/2951) 0 * Os_TE_295091 Os_TE_295079 Chr5 13921672 13921673 + INDITTO 263 0.0136 (39/2878) 0 * * Os_TE_295061 Chr5 13919009 13919010 + ORSiTERTOOT00226 792 0.0003 (1/2969) 0 * Os_TE_295060 Os_TE_295060 Chr5 13919005 13919004 - SZ-22_LTR 4403 0.0003 (1/2964) 0 * Os_TE_295061 Os_TE_295025 Chr5 13898344 13898343 + TRUNCATOR 2918 0.0030 (9/2985) 0 * Os_TE_295024 Os_TE_295024 Chr5 13898343 13898344 - TRUNCATOR 2918 0.0030 (9/2992) 0 * Os_TE_295025 Os_TE_295016 Chr5 13895780 13895781 - ORSgTETN00200001 10994 0.4221 (1205/2855) -1 * Os_TE_295015 Os_TE_295015 Chr5 13895778 13895777 + SPMLIKE 10989 0.4288 (1228/2864) -1 * Os_TE_295016 Os_TE_295014 Chr5 13894803 13894804 + RIREX_LTR 8828 0.0007 (2/2989) 0 * Os_TE_295013 Os_TE_295013 Chr5 13894799 13894798 - RIREX_LTR 8828 0.0007 (2/2991) 0 * Os_TE_295014 Os_TE_295007 Chr5 13893094 13893095 + ORSiCMCM00100019 2717 0.1233 (366/2969) 0 * Os_TE_295006 Os_TE_295006 Chr5 13893090 13893089 - TRUNCATOR2_LTR 2904 0.1282 (382/2979) 0 * Os_TE_295007 Os_TE_294965 Chr5 13880932 13880933 + TRUNCATOR 2918 0.2984 (892/2989) 0 * * Os_TE_294962 Chr5 13880064 13880063 - RIREX_LTR 8828 0.0010 (3/2998) 0 * * Os_TE_294901 Chr5 13865035 13865034 - ORSgTEMT01700156 119 0.0020 (6/2976) 0 * * Os_TE_294900 Chr5 13864878 13864879 - RIREX_LTR 8828 0.4649 (1364/2934) 0 * Os_TE_294899 Os_TE_294899 Chr5 13864874 13864873 + RIREX_LTR 8828 0.4696 (1388/2956) 0 * Os_TE_294900 Os_TE_294859 Chr5 13845872 13845873 - OSTE9 421 0.0020 (6/2976) 0 * * Os_TE_294853 Chr5 13842732 13842731 + STOWAWAY49_OS 241 0.0943 (282/2990) 0 * * Os_TE_294831 Chr5 13833370 13833371 - MuDR4_OS 7610 0.0291 (87/2985) 0 * Os_TE_294830 Os_TE_294830 Chr5 13833360 13833359 - MuDR4_OS 7610 0.0518 (87/1679) 0 * Os_TE_294831 Os_TE_294807 Chr5 13822050 13822051 - SC-3_LTR 5748 0.0003 (1/2990) 0 * Os_TE_294806 Os_TE_294806 Chr5 13822046 13822045 + ORSiTERTOOT00296 5553 0.0003 (1/2988) 0 * Os_TE_294807 Os_TE_294805 Chr5 13821699 13821698 - RETROFIT5_LTR 4785 0.0010 (3/2993) 0 * * Os_TE_294704 Chr5 13770853 13770854 + SPMLIKE 10989 0.3013 (900/2987) 0 * * Os_TE_294702 Chr5 13769301 13769302 + ORSgTETNOOT00908 242 0.0137 (41/2998) 0 * Os_TE_294701 Os_TE_294701 Chr5 13769295 13769294 + ORSgTETNOOT01219 231 0.0133 (40/2997) 0 * Os_TE_294702 Os_TE_294687 Chr5 13764903 13764902 + ORSgTEMT00101674 340 0.0933 (279/2991) 0 * Os_TE_294686 Os_TE_294686 Chr5 13764902 13764903 + NDNA1TNA_OS 334 0.0902 (269/2981) 0 * Os_TE_294687 Os_TE_294665 Chr5 13760261 13760260 + ORSgTETN00200005 1121 0.0198 (57/2884) 0 * * Os_TE_294659 Chr5 13757201 13757202 - RIREX_LTR 8828 0.0003 (1/2979) 0 * * Os_TE_294655 Chr5 13753100 13753099 - TRUNCATOR 2918 0.1370 (405/2957) 0 * Os_TE_294654 Os_TE_294654 Chr5 13753098 13753099 + TRUNCATOR 2918 0.1405 (417/2967) 0 * Os_TE_294655 Os_TE_294645 Chr5 13746381 13746380 - COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * * Os_TE_294636 Chr5 13744266 13744267 - TRUNCATOR 2918 0.0010 (3/2987) 0 * * Os_TE_294551 Chr5 13700746 13700747 + NDNA1TNA_OS 334 0.1019 (305/2993) 0 * Os_TE_294550 Os_TE_294550 Chr5 13700744 13700743 - NDNA1TNA_OS 334 0.1006 (301/2992) 0 * Os_TE_294551 Os_TE_294540 Chr5 13697362 13697361 + CASGRANDA 465 0.0047 (14/2989) 0 * * Os_TE_294506 Chr5 13686614 13686615 + COPIA3-LTR_OS 5061 0.0020 (6/2994) 0 * Os_TE_294505 Os_TE_294505 Chr5 13686610 13686609 - COPIA3-LTR_OS 5061 0.0020 (6/2994) 0 * Os_TE_294506 Os_TE_294504 Chr5 13686217 13686218 - ORSiTERTOOT00423 5187 0.0020 (6/2995) 0 * Os_TE_294503 Os_TE_294503 Chr5 13686213 13686212 + ORSiTERTOOT00423 5187 0.0020 (6/2997) 0 * Os_TE_294504 Os_TE_294502 Chr5 13685525 13685526 - TRUNCATOR 2918 0.0043 (13/2992) 0 * * Os_TE_294497 Chr5 13679234 13679235 + GYPSY-A_LTR 8951 0.0003 (1/2941) 0 * Os_TE_294496 Os_TE_294496 Chr5 13679230 13679229 - SZ-40LTR 2465 0.0003 (1/2936) 0 * Os_TE_294497 Os_TE_294477 Chr5 13673482 13673483 + STOWAWAY11_OS 292 0.0015 (2/1351) -1 * * Os_TE_294474 Chr5 13672319 13672320 + DS-RICE4N 715 0.0054 (16/2972) 0 * * Os_TE_294466 Chr5 13668980 13668979 + STOWAWAY50_OS 174 0.0012 (3/2604) 0 * Os_TE_294465 Os_TE_294465 Chr5 13668977 13668978 + ORSgTEMT01701115 144 0.1401 (418/2983) 0 * Os_TE_294466 Os_TE_294464 Chr5 13668547 13668548 - RIREX_LTR 8828 0.0973 (291/2991) 0 * Os_TE_294463 Os_TE_294463 Chr5 13668543 13668542 + RIREX_LTR 8828 0.0976 (292/2992) 0 * Os_TE_294464 Os_TE_294462 Chr5 13668176 13668177 + SPMLIKE 10989 0.0003 (1/2993) 0 * * Os_TE_294441 Chr5 13662505 13662506 - EnSpm-16_OS 13336 0.0047 (14/2996) 0 * Os_TE_294440 Os_TE_294440 Chr5 13662503 13662502 + EnSpm-16_OS 13336 0.0047 (14/2994) 0 * Os_TE_294441 Os_TE_294439 Chr5 13661840 13661841 + ORSiTERTOOT00226 792 0.0020 (6/2991) 0 * Os_TE_294438 Os_TE_294438 Chr5 13661836 13661835 - SZ-22_LTR 4403 0.0020 (6/2987) 0 * Os_TE_294439 Os_TE_294433 Chr5 13658121 13658122 + INDITTO 263 0.0047 (14/2973) 0 * * Os_TE_294431 Chr5 13658067 13658068 + SZ-9LTR 965 0.0050 (15/2972) 0 * Os_TE_294430 Os_TE_294430 Chr5 13658063 13658062 - SZ-9LTR 965 0.0057 (17/2978) 0 * Os_TE_294431 Os_TE_294423 Chr5 13644786 13655483 + ENSPM4_OS 11610 0.0810 (242/2986) 1 Intact * Os_TE_294402 Chr5 13637310 13637309 + RIREX_LTR 8828 0.0047 (14/2986) 0 * * Os_TE_294401 Chr5 13637100 13637101 - COPI2_LTR 4733 0.0014 (4/2954) 0 * * Os_TE_294395 Chr5 13634976 13634977 - RETRO2_LTR 12874 0.1520 (455/2994) 0 * Os_TE_294394 Os_TE_294394 Chr5 13634972 13634971 + RETRO2_LTR 12874 0.1325 (390/2943) 0 * Os_TE_294395 Os_TE_294387 Chr5 13632972 13632973 + RIRE2_LTR 11306 0.0150 (45/2991) 0 * Os_TE_294386 Os_TE_294386 Chr5 13632968 13632967 - RIRE2_LTR 11306 0.0158 (47/2984) 0 * Os_TE_294387 Os_TE_294357 Chr5 13624958 13624959 + SC-8_LTR 4951 0.0010 (3/2993) 0 * Os_TE_294356 Os_TE_294356 Chr5 13624954 13624953 - SC-8_LTR 4951 0.0010 (3/2996) 0 * Os_TE_294357 Os_TE_294354 Chr5 13621611 13621612 - ORSgTETNOOT00908 242 0.0003 (1/2936) 0 * Os_TE_294353 Os_TE_294353 Chr5 13621609 13621608 + ORSgTETNOOT00908 242 0.0003 (1/2933) 0 * Os_TE_294354 Os_TE_294345 Chr5 13619557 13619558 - MuDR2_OS 6770 0.0030 (9/2953) 0 * * Os_TE_294326 Chr5 13614820 13614821 + SPMLIKE 10989 0.0004 (1/2621) -1 * * Os_TE_294303 Chr5 13606393 13606392 + TRSA_OS 353 0.0004 (1/2824) 0 * * Os_TE_294281 Chr5 13604054 13604055 + SZ-22_LTR 4403 0.0020 (6/2996) 0 * Os_TE_294280 Os_TE_294280 Chr5 13604050 13604049 - SZ-22_LTR 4403 0.0020 (6/2994) 0 * Os_TE_294281 Os_TE_294275 Chr5 13603492 13603493 - ORSgTETN00200001 10994 0.0029 (8/2712) 0 * Os_TE_294274 Os_TE_294274 Chr5 13603490 13603489 + SPMLIKE 10989 0.0023 (7/2997) 0 * Os_TE_294275 Os_TE_294273 Chr5 13603233 13603234 + RIREX_LTR 8828 0.0003 (1/2994) 0 * * Os_TE_294244 Chr5 13594027 13594028 - TRUNCATOR2_LTR 2904 0.0157 (47/2992) 0 * Os_TE_294243 Os_TE_294243 Chr5 13594023 13594022 + ORSiTERTOOT00028 8600 0.0154 (46/2989) 0 * Os_TE_294244 Os_TE_294226 Chr5 13589304 13589303 + RIREX_LTR 8828 0.0003 (1/2989) 0 * * Os_TE_294215 Chr5 13585194 13585195 - RETRO1_LTR 8314 0.0160 (44/2753) 0 * * Os_TE_294206 Chr5 13584105 13584106 + HARB-1_OS 5166 0.0014 (4/2946) 0 * Os_TE_294205 Os_TE_294205 Chr5 13584103 13584102 - HARB-1_OS 5166 0.0014 (4/2894) 0 * Os_TE_294206 Os_TE_294200 Chr5 13581158 13581157 - TRUNCATOR2_LTR 2904 0.0003 (1/2967) 0 * * Os_TE_294117 Chr5 13528106 13527315 + ORSiTERTOOT00226 792 0.8283 (2484/2999) 1 Intact Os_TE_294109 Os_TE_294109 Chr5 13523708 13528106 - SZ-22_LTR 4403 0.8275 (2476/2992) 1 Intact Os_TE_294117 Os_TE_294097 Chr5 13520407 13520406 - OSLINE1-2 7128 0.0003 (1/2980) 0 * * Os_TE_294074 Chr5 13504783 13504784 + CRM-LTR_OS 7749 0.0010 (3/2996) 0 * * Os_TE_294059 Chr5 13498984 13498985 + AMYLTP 383 0.0020 (6/2989) 0 * Os_TE_294058 Os_TE_294058 Chr5 13498976 13498975 - AMYLTP 383 0.0020 (6/2988) 0 * Os_TE_294059 Os_TE_294048 Chr5 13477738 13477739 + ORSiTERTOOT00296 5553 0.0003 (1/2998) 0 * Os_TE_294047 Os_TE_294047 Chr5 13477734 13477733 - SC-3_LTR 5748 0.0003 (1/2998) 0 * Os_TE_294048 Os_TE_294030 Chr5 13471368 13471369 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_294029 Os_TE_294029 Chr5 13471364 13471363 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_294030 Os_TE_294021 Chr5 13468906 13468905 + RIRE2_LTR 11306 0.0151 (45/2972) 0 * * Os_TE_294020 Chr5 13468701 13468702 + ORSgTEMT00500498 155 0.0007 (2/2967) 0 * * Os_TE_293970 Chr5 13456899 13456900 + DS-RICE4N 715 0.0123 (35/2856) 0 * Os_TE_293969 Os_TE_293969 Chr5 13456892 13456891 - DS-RICE2N 613 0.0129 (37/2867) 0 * Os_TE_293970 Os_TE_293933 Chr5 13444634 13444633 + SZ-7_LTR 11457 0.0003 (1/2944) 0 * * Os_TE_293919 Chr5 13440305 13440304 - RIREX_LTR 8828 0.0034 (9/2632) 0 * * Os_TE_293904 Chr5 13433896 13433895 - COPI2_LTR 4733 0.0007 (2/2964) 0 * * Os_TE_293888 Chr5 13432241 13432242 - TRUNCATOR2_LTR 2904 0.0129 (38/2956) 0 * * Os_TE_293865 Chr5 13424493 13424494 + ORSiTERTOOT00226 792 0.0003 (1/2927) 0 * * Os_TE_293864 Chr5 13424371 13424372 + OSTE33 1012 0.1132 (331/2925) 0 * Os_TE_293863 Os_TE_293863 Chr5 13424362 13424361 + OSTE33 1012 0.1134 (332/2927) 0 * Os_TE_293864 Os_TE_293800 Chr5 13394930 13394931 + CACTA-B 1103 0.1621 (481/2967) 0 * * Os_TE_293742 Chr5 13377602 13377603 + SC-8_LTR 4951 0.0003 (1/2981) 0 * * Os_TE_293737 Chr5 13373879 13373880 - AMYLTP 383 0.0047 (14/2989) 0 * * Os_TE_293731 Chr5 13372109 13372110 + TRUNCATOR 2918 0.0027 (8/2997) 0 * * Os_TE_293730 Chr5 13371866 13371636 + ORSgTETNOOT01219 231 0.8414 (2510/2983) 1 Intact Os_TE_293729 Os_TE_293729 Chr5 13371631 13371867 + ORSgTETNOOT00908 242 0.8364 (2469/2952) 1 Intact Os_TE_293730 Os_TE_293722 Chr5 13370273 13370272 - RETRO1_LTR 8314 0.0030 (9/2992) 0 * * Os_TE_293715 Chr5 13368276 13368277 - ORSiTETNOOT00200 3563 0.0124 (37/2983) 0 * Os_TE_293714 Os_TE_293714 Chr5 13368269 13368268 + TWIFBIG 3567 0.0114 (34/2985) 0 * Os_TE_293715 Os_TE_293709 Chr5 13365864 13362871 - TRUNCATOR 2918 0.8399 (2466/2936) 1 Intact Os_TE_293706 Os_TE_293706 Chr5 13362871 13365859 + TRUNCATOR 2918 0.8420 (2505/2975) 1 Intact Os_TE_293709 Os_TE_293702 Chr5 13362127 13362128 - ORSiTETNOOT00134 607 0.0003 (1/2983) 0 * * Os_TE_293699 Chr5 13361099 13361100 - F770 284 0.0088 (26/2952) 0 * Os_TE_293698 Os_TE_293698 Chr5 13361097 13361096 + F770 284 0.0091 (27/2959) 0 * Os_TE_293699 Os_TE_293674 Chr5 13336163 13336164 - INDITTO 263 0.0356 (106/2979) 0 * Os_TE_293673 Os_TE_293673 Chr5 13336161 13336160 + INDITTO 263 0.0352 (105/2979) 0 * Os_TE_293674 Os_TE_293672 Chr5 13335608 13335609 + ORSiTERTOOT00097 759 0.1129 (334/2958) 0 * * Os_TE_293669 Chr5 13333508 13333507 - STOWAWAY51_OS 246 0.0120 (36/2998) 0 * Os_TE_293668 Os_TE_293668 Chr5 13333502 13333503 + STOWAWAY51_OS 246 0.0120 (36/2994) 0 * Os_TE_293669 Os_TE_293663 Chr5 13330873 13330874 - RIRE5-LTR_OS 6427 0.0090 (27/2996) 0 * Os_TE_293662 Os_TE_293662 Chr5 13330866 13330865 + RIRE5-LTR_OS 6427 0.0080 (24/2996) 0 * Os_TE_293663 Os_TE_293652 Chr5 13325901 13325902 - RETRO2_LTR 12874 0.0010 (3/2992) 0 * Os_TE_293651 Os_TE_293651 Chr5 13325897 13325896 + ORSgTERTOOT00009 12852 0.0010 (3/2993) 0 * Os_TE_293652 Os_TE_293637 Chr5 13323100 13323101 - RETRO1_LTR 8314 0.0017 (5/2992) 0 * Os_TE_293636 Os_TE_293636 Chr5 13323096 13323095 + RETRO2A_LTR 12895 0.0017 (5/2990) 0 * Os_TE_293637 Os_TE_293616 Chr5 13315022 13315021 - TRUNCATOR 2918 0.0050 (15/2990) 0 * Os_TE_293615 Os_TE_293615 Chr5 13315021 13315022 + TRUNCATOR 2918 0.0050 (15/2992) 0 * Os_TE_293616 Os_TE_293606 Chr5 13313717 13313718 + ORSgTERTOOT00009 12852 0.0122 (36/2950) 0 * Os_TE_293605 Os_TE_293605 Chr5 13313713 13313712 - RETRO1_LTR 8314 0.0121 (36/2968) 0 * Os_TE_293606 Os_TE_293520 Chr5 13281724 13281725 - RIREX_LTR 8828 0.0007 (2/2939) 0 * Os_TE_293519 Os_TE_293519 Chr5 13281720 13281719 + RIREX_LTR 8828 0.0007 (2/2945) 0 * Os_TE_293520 Os_TE_293503 Chr5 13275783 13275782 - ORSgTEMT00502257 142 0.0003 (1/2989) 0 * * Os_TE_293500 Chr5 13274907 13274908 - RIREX_LTR 8828 0.0127 (38/2991) 0 * Os_TE_293499 Os_TE_293499 Chr5 13274903 13274902 + RIREX_LTR 8828 0.0117 (35/2991) 0 * Os_TE_293500 Os_TE_293477 Chr5 13266885 13266886 - ORSgTETN00200001 10994 0.0013 (4/2984) 0 * Os_TE_293476 Os_TE_293476 Chr5 13266883 13266882 + SPMLIKE 10989 0.0013 (4/2989) 0 * Os_TE_293477 Os_TE_293471 Chr5 13265981 13265982 + MUDRN2_OS 756 0.0014 (4/2906) 0 * Os_TE_293470 Os_TE_293470 Chr5 13265975 13265974 + MUDRN2_OS 756 0.0014 (4/2904) 0 * Os_TE_293471 Os_TE_293447 Chr5 13258650 13258651 + ORSiCMCM00100019 2717 0.0027 (8/2993) 0 * Os_TE_293446 Os_TE_293446 Chr5 13258646 13258645 - TRUNCATOR2_LTR 2904 0.0030 (9/2993) 0 * Os_TE_293447 Os_TE_293438 Chr5 13256781 13256782 - RETROSAT2LTRA 3112 0.0030 (9/2979) 0 * * Os_TE_293383 Chr5 13193416 13199646 - LINE-7_OS 7090 0.8305 (2465/2968) 1 Intact * Os_TE_293382 Chr5 13193160 13193161 + ORSiTERTOOT00226 792 0.0003 (1/2970) 0 * Os_TE_293381 Os_TE_293381 Chr5 13193156 13193155 - SZ-22_LTR 4403 0.0003 (1/2971) 0 * Os_TE_293382 Os_TE_293363 Chr5 13185117 13185118 + COPIA2-LTR_OS 6433 0.0007 (2/2954) 0 * Os_TE_293362 Os_TE_293362 Chr5 13185113 13185112 - COPIA2-LTR_OS 6433 0.0010 (3/2956) 0 * Os_TE_293363 Os_TE_293318 Chr5 13141969 13141970 + GYPSY-A_LTR 8951 0.0004 (1/2758) 0 * * Os_TE_293314 Chr5 13140124 13136731 + TRUNCATOR2_LTR 2904 0.8063 (2094/2597) 1 Intact * Os_TE_293294 Chr5 13120186 13136239 - SZ-40LTR 2465 0.8360 (2502/2993) 1 Intact * Os_TE_293291 Chr5 13119794 13119793 - RETROSAT2LTR 12796 0.0030 (9/2995) 0 * * Os_TE_293286 Chr5 13117551 13117552 - TRUNCATOR2_LTR 2904 0.0050 (15/2982) 0 * * Os_TE_293285 Chr5 13117280 13117281 + RIREX_LTR 8828 0.0090 (27/2993) 0 * Os_TE_293284 Os_TE_293284 Chr5 13117276 13117275 - RIREX_LTR 8828 0.0090 (27/2987) 0 * Os_TE_293285 Os_TE_293280 Chr5 13114899 13114900 + SZ-62LTR 3649 0.0003 (1/2980) 0 * * Os_TE_293279 Chr5 13112183 13112184 + ORSiTERTOOT00296 5553 0.0017 (5/2983) 0 * Os_TE_293278 Os_TE_293278 Chr5 13112179 13112178 - SC-3_LTR 5748 0.0017 (5/2988) 0 * Os_TE_293279 Os_TE_293241 Chr5 13093962 13093963 + HARB-N1_OS 2589 0.0030 (9/2987) 0 * Os_TE_293240 Os_TE_293240 Chr5 13093960 13093959 - HARB-N1_OS 2589 0.0030 (9/2985) 0 * Os_TE_293241 Os_TE_293220 Chr5 13086634 13086371 - INDITTO 263 0.8138 (2387/2933) 1 Intact * Os_TE_293217 Chr5 13085757 13085758 - RIRE2_LTR 11306 0.0030 (9/2965) 0 * Os_TE_293216 Os_TE_293216 Chr5 13085753 13085752 + RIRE2_LTR 11306 0.0030 (9/2973) 0 * Os_TE_293217 Os_TE_293199 Chr5 13082490 13082491 - ORSiTERT00200154 9386 0.1363 (400/2935) 0 * Os_TE_293198 Os_TE_293198 Chr5 13082484 13082483 + TRUNCATOR 2918 0.1504 (441/2933) 0 * Os_TE_293199 Os_TE_293197 Chr5 13081084 13081085 + RIRE2_LTR 11306 0.0027 (8/2978) 0 * Os_TE_293196 Os_TE_293196 Chr5 13081080 13081079 - RIRE2_LTR 11306 0.0027 (8/2973) 0 * Os_TE_293197 Os_TE_293195 Chr5 13080634 13080633 - RETROSAT3_LTR 11537 0.0105 (31/2939) 0 * * Os_TE_293180 Chr5 13068380 13068381 + ORSiTERTOOT00381 4988 0.0157 (47/2992) 0 * Os_TE_293179 Os_TE_293179 Chr5 13068376 13068375 - SC-8_LTR 4951 0.0157 (47/2992) 0 * Os_TE_293180 Os_TE_293173 Chr5 13063787 13063788 + RETRO2_LTR 12874 0.0125 (37/2960) 0 * Os_TE_293172 Os_TE_293172 Chr5 13063783 13063782 - RETRO2_LTR 12874 0.0118 (35/2960) 0 * Os_TE_293173 Os_TE_293166 Chr5 13062529 13062528 - TRUNCATOR2_LTR 2904 0.0048 (14/2921) 0 * * Os_TE_293165 Chr5 13060775 13060776 - ORSgTEMT01602277 239 0.0010 (3/2876) 0 * * Os_TE_293162 Chr5 13057431 13057432 + ORSiTERTOOT00034 791 0.0003 (1/2988) 0 * * Os_TE_293158 Chr5 13054485 13054486 + TRUNCATOR 2918 0.1469 (439/2989) 0 * * Os_TE_293155 Chr5 13053183 13053182 - TRUNCATOR2_LTR 2904 0.0007 (2/2992) 0 * * Os_TE_293142 Chr5 13044360 13044361 + ORSiTERTOOT00296 5553 0.0007 (2/2984) 0 * Os_TE_293141 Os_TE_293141 Chr5 13044356 13044355 - SC-3_LTR 5748 0.0007 (2/2983) 0 * Os_TE_293142 Os_TE_293127 Chr5 13036711 13036712 + ORSiTERTOOT00296 5553 0.0017 (5/2984) 0 * * Os_TE_293123 Chr5 13035365 13035366 + ORSiTERTOOT00296 5553 0.0030 (9/2986) 0 * Os_TE_293122 Os_TE_293122 Chr5 13035361 13035360 - SC-3_LTR 5748 0.0027 (8/2985) 0 * Os_TE_293123 Os_TE_293113 Chr5 13033728 13033727 - ORSiTERTOOT00183 3603 0.0003 (1/2977) 0 * * Os_TE_293112 Chr5 13029875 13029876 + ORSiTERTOOT00296 5553 0.0003 (1/2998) 0 * Os_TE_293111 Os_TE_293111 Chr5 13029871 13029870 - SC-3_LTR 5748 0.0003 (1/2997) 0 * Os_TE_293112 Os_TE_293105 Chr5 13027459 13027460 + RIREX_LTR 8828 0.0003 (1/2972) 0 * Os_TE_293104 Os_TE_293104 Chr5 13027455 13027454 - RIREX_LTR 8828 0.0003 (1/2973) 0 * Os_TE_293105 Os_TE_293070 Chr5 13009662 13009663 + ORSiTERTOOT00296 5553 0.0057 (17/2988) 0 * Os_TE_293069 Os_TE_293069 Chr5 13009658 13009657 - SC-3_LTR 5748 0.0054 (16/2969) 0 * Os_TE_293070 Os_TE_292990 Chr5 12937555 12937556 - ORSgTEMT02000041 194 0.1176 (352/2993) 0 * * Os_TE_292935 Chr5 12918783 12918784 - RETROSAT2LTR 12796 0.1527 (437/2861) 0 * Os_TE_292934 Os_TE_292934 Chr5 12918781 12918780 + RETROSAT2LTR 12796 0.1438 (402/2796) 0 * Os_TE_292935 Os_TE_292925 Chr5 12916068 12916069 - RIRE3_LTR 12054 0.0038 (8/2086) -1 * * Os_TE_292923 Chr5 12916032 12916031 - TRUNCATOR 2918 0.0194 (26/1339) -1 * * Os_TE_292852 Chr5 12899136 12899135 + ORSiTERTOOT00226 792 0.0003 (1/2987) 0 * Os_TE_292851 Os_TE_292851 Chr5 12899131 12899132 - SZ-22_LTR 4403 0.0003 (1/2988) 0 * Os_TE_292852 Os_TE_292849 Chr5 12899049 12899048 - RIREX_LTR 8828 0.0003 (1/2994) 0 * * Os_TE_292844 Chr5 12897549 12897548 + COPIA2-LTR_OS 6433 0.0003 (1/2971) 0 * * Os_TE_292841 Chr5 12895595 12895594 - RIRE2_LTR 11306 0.0127 (38/2981) 0 * * Os_TE_292788 Chr5 12870357 12870358 + SETARIA1 1293 0.0101 (30/2959) 0 * Os_TE_292787 Os_TE_292787 Chr5 12870349 12870348 - SETARIA1 1293 0.0108 (32/2963) 0 * Os_TE_292788 Os_TE_292736 Chr5 12841131 12841130 + ORSiTERTOOT00033 4884 0.0052 (15/2871) 0 * * Os_TE_292727 Chr5 12836060 12836059 + OSTE18 129 0.0023 (7/2988) 0 * * Os_TE_292708 Chr5 12832225 12832226 - SZ-22_LTR 4403 0.0003 (1/2981) 0 * Os_TE_292707 Os_TE_292707 Chr5 12832221 12832220 + ORSiTERTOOT00226 792 0.0003 (1/2989) 0 * Os_TE_292708 Os_TE_292702 Chr5 12831202 12831201 - RIRE2_LTR 11306 0.0127 (38/2981) 0 * * Os_TE_292693 Chr5 12828970 12828971 + COPIA2-LTR_OS 6433 0.0013 (4/2998) 0 * * Os_TE_292691 Chr5 12828635 12828636 - RIREX_LTR 8828 0.0003 (1/2992) 0 * * Os_TE_292684 Chr5 12826503 12826504 - ORSgTETN00200001 10994 0.0111 (33/2979) 0 * * Os_TE_292655 Chr5 12813498 12813499 - RIRE3A_LTR 10580 0.0078 (23/2957) 0 * Os_TE_292654 Os_TE_292654 Chr5 12813494 12813493 + RIRE3A_LTR 10580 0.0091 (27/2962) 0 * Os_TE_292655 Os_TE_292652 Chr5 12813081 12813080 + ORSiTERTOOT00226 792 0.0003 (1/2955) 0 * * Os_TE_292571 Chr5 12794957 12794956 - RIRE3_LTR 12054 0.0090 (27/2994) 0 * * Os_TE_292546 Chr5 12789817 12789816 + OSTONOR1_LTR 6440 0.0030 (9/2996) 0 * * Os_TE_292545 Chr5 12789628 12789629 - SZ-22_LTR 4403 0.0003 (1/2925) 0 * * Os_TE_292528 Chr5 12787137 12787138 + ORSiTERTOOT00226 792 0.0003 (1/2976) 0 * * Os_TE_292523 Chr5 12786198 12786197 - TRUNCATOR 2918 0.0114 (34/2980) 0 * * Os_TE_292357 Chr5 12703186 12703187 + ORSiTERTOOT00226 792 0.0008 (2/2584) 0 * * Os_TE_292335 Chr5 12696640 12696639 - TRUNCATOR 2918 0.0037 (10/2674) 0 * Os_TE_292334 Os_TE_292334 Chr5 12696639 12696640 + TRUNCATOR 2918 0.0033 (9/2691) 0 * Os_TE_292335 Os_TE_292333 Chr5 12696544 12696543 + ORSiTERTOOT00226 792 0.0004 (1/2806) 0 * * Os_TE_292323 Chr5 12693950 12693949 + ORSiTERTOOT00226 792 0.0090 (27/2997) 0 * * Os_TE_292300 Chr5 12690334 12690335 - RIREX_LTR 8828 0.0060 (18/2999) 0 * Os_TE_292299 Os_TE_292299 Chr5 12690330 12690329 + RIREX_LTR 8828 0.0060 (18/2995) 0 * Os_TE_292300 Os_TE_292298 Chr5 12689930 12689931 - SZ-22_LTR 4403 0.0003 (1/2993) 0 * Os_TE_292297 Os_TE_292297 Chr5 12689926 12689925 + ORSiTERTOOT00226 792 0.0003 (1/2993) 0 * Os_TE_292298 Os_TE_292296 Chr5 12689337 12689338 - CRM-LTR_OS 7749 0.0003 (1/2996) 0 * Os_TE_292295 Os_TE_292295 Chr5 12689333 12689332 + CRM-LTR_OS 7749 0.0003 (1/2996) 0 * Os_TE_292296 Os_TE_292235 Chr5 12669378 12669379 - SZ-22_LTR 4403 0.0014 (4/2922) 0 * * Os_TE_292232 Chr5 12668570 12668571 + ORSiTERTOOT00226 792 0.0003 (1/2903) 0 * Os_TE_292231 Os_TE_292231 Chr5 12668566 12668565 - SZ-22_LTR 4403 0.0003 (1/2907) 0 * Os_TE_292232 Os_TE_292219 Chr5 12664779 12664780 + ORSiTERTOOT00226 792 0.0007 (2/2982) 0 * * Os_TE_292207 Chr5 12660677 12660678 - SZ-22_LTR 4403 0.0004 (1/2838) 0 * * Os_TE_292139 Chr5 12647428 12647427 + ORSiTERTOOT00226 792 0.0004 (1/2542) 0 * * Os_TE_292047 Chr5 12623080 12623079 - SZ-22_LTR 4403 0.0010 (3/2996) 0 * * Os_TE_292044 Chr5 12620582 12620583 - SZ-22_LTR 4403 0.0003 (1/2862) 0 * * Os_TE_292042 Chr5 12620079 12620080 - CRM-LTR_OS 7749 0.0054 (16/2965) 0 * Os_TE_292041 Os_TE_292041 Chr5 12620075 12620074 + CRM-LTR_OS 7749 0.0051 (15/2970) 0 * Os_TE_292042 Os_TE_292008 Chr5 12614864 12614865 + ORSiCMCM00100019 2717 0.1327 (390/2939) 0 * * Os_TE_291943 Chr5 12578665 12578666 + ORSiTERTOOT00226 792 0.0003 (1/2998) 0 * * Os_TE_291936 Chr5 12575317 12575318 - TESS 244 0.0027 (7/2623) 0 * * Os_TE_291931 Chr5 12573522 12573523 - SZ-22_LTR 4403 0.0004 (1/2561) 0 * Os_TE_291930 Os_TE_291930 Chr5 12573518 12573517 + ORSiTERTOOT00226 792 0.0004 (1/2558) 0 * Os_TE_291931 Os_TE_291929 Chr5 12572855 12572854 + ORSiTERTOOT00226 792 0.0004 (1/2567) 0 * * Os_TE_291927 Chr5 12572170 12572169 + ORSiTERTOOT00226 792 0.0004 (1/2325) 0 * * Os_TE_291803 Chr5 12454809 12454808 + ORSiTERTOOT00226 792 0.0003 (1/2924) 0 * * Os_TE_291801 Chr5 12453342 12453343 - COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * Os_TE_291800 Os_TE_291800 Chr5 12453338 12453337 + COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_291801 Os_TE_291798 Chr5 12452400 12441896 + RETRO1_LTR 8314 0.8349 (2423/2902) 1 Intact Os_TE_291795 Os_TE_291795 Chr5 12441896 12452400 - RETRO1_LTR 8314 0.8384 (2469/2945) 1 Intact Os_TE_291798 Os_TE_291790 Chr5 12441277 12441278 - RIRE2_LTR 11306 0.0122 (36/2956) 0 * Os_TE_291789 Os_TE_291789 Chr5 12441273 12441272 + RIRE2_LTR 11306 0.0122 (36/2961) 0 * Os_TE_291790 Os_TE_291788 Chr5 12440986 12440987 + ORSiTERTOOT00034 791 0.0014 (4/2959) 0 * * Os_TE_291781 Chr5 12440194 12440193 + ORSiTERTOOT00226 792 0.0003 (1/2976) 0 * * Os_TE_291775 Chr5 12439579 12439578 - SZ-22_LTR 4403 0.0103 (30/2910) 0 * * Os_TE_291763 Chr5 12437650 12437649 - SZ-22_LTR 4403 0.0004 (1/2589) 0 * * Os_TE_291758 Chr5 12436503 12436504 + TRUNCATOR 2918 0.2160 (430/1991) -1 * * Os_TE_291756 Chr5 12436340 12436339 - CRM-LTR_OS 7749 0.0047 (11/2320) 0 * * Os_TE_291744 Chr5 12434889 12434890 + CRM-LTR_OS 7749 0.0054 (16/2961) 0 * * Os_TE_291720 Chr5 12430620 12430621 - SZ-22_LTR 4403 0.0010 (3/2938) 0 * * Os_TE_291716 Chr5 12429221 12429222 - CRM-LTR_OS 7749 0.0024 (7/2952) 0 * * Os_TE_291709 Chr5 12428528 12428527 + ORSiTERTOOT00226 792 0.0003 (1/2939) 0 * * Os_TE_291705 Chr5 12426835 12426836 - SZ-22_LTR 4403 0.0003 (1/2951) 0 * Os_TE_291704 Os_TE_291704 Chr5 12426831 12426830 + ORSiTERTOOT00226 792 0.0003 (1/2968) 0 * Os_TE_291705 Os_TE_291703 Chr5 12425244 12425245 + ORSiTERTOOT00226 792 0.0014 (4/2961) 0 * Os_TE_291702 Os_TE_291702 Chr5 12425240 12425239 - SZ-22_LTR 4403 0.0014 (4/2961) 0 * Os_TE_291703 Os_TE_291700 Chr5 12424171 12424172 + ORSiTERTOOT00226 792 0.0003 (1/2969) 0 * * Os_TE_291695 Chr5 12423550 12423549 + ORSiTERTOOT00226 792 0.0003 (1/2960) 0 * * Os_TE_291634 Chr5 12401460 12401461 - SZ-22_LTR 4403 0.0004 (1/2707) 0 * Os_TE_291633 Os_TE_291633 Chr5 12401456 12401455 + ORSiTERTOOT00226 792 0.0004 (1/2736) 0 * Os_TE_291634 Os_TE_291621 Chr5 12400261 12400262 + ORSiTERTOOT00226 792 0.0003 (1/2862) 0 * * Os_TE_291619 Chr5 12399996 12399997 - CRM-LTR_OS 7749 0.0015 (4/2735) 0 * * Os_TE_291612 Chr5 12399108 12399107 - SZ-22_LTR 4403 0.0003 (1/2920) 0 * * Os_TE_291518 Chr5 12383757 12383756 - SZ-22_LTR 4403 0.0007 (2/2986) 0 * * Os_TE_291515 Chr5 12383053 12383052 - SZ-22_LTR 4403 0.0003 (1/2975) 0 * * Os_TE_291453 Chr5 12363412 12363411 + ORSiTERTOOT00226 792 0.0016 (4/2525) 0 * * Os_TE_291326 Chr5 12330437 12330438 + ORSiTERTOOT00226 792 0.0020 (6/2966) 0 * * Os_TE_291320 Chr5 12329351 12329352 + ORSiTERTOOT00226 792 0.0003 (1/2989) 0 * Os_TE_291319 Os_TE_291319 Chr5 12329347 12329346 + ORSiTERTOOT00226 792 0.0003 (1/2948) 0 * Os_TE_291320 Os_TE_291306 Chr5 12322877 12322878 + ORSiTERTOOT00034 791 0.0003 (1/2974) 0 * Os_TE_291305 Os_TE_291305 Chr5 12322873 12322872 - SZ-22_LTR 4403 0.0003 (1/2974) 0 * Os_TE_291306 Os_TE_291254 Chr5 12306719 12306718 - SZ-22_LTR 4403 0.1125 (332/2951) 0 * * Os_TE_291175 Chr5 12284402 12284403 - SZ-22_LTR 4403 0.0007 (2/2767) 0 * * Os_TE_291085 Chr5 12258959 12258960 - SZ-22_LTR 4403 0.0010 (3/2970) 0 * * Os_TE_291052 Chr5 12249099 12249100 + SZ-22_LTR 4403 0.0003 (1/2926) 0 * * Os_TE_291048 Chr5 12248769 12248768 + ORSiTERTOOT00226 792 0.0021 (6/2924) 0 * * Os_TE_290939 Chr5 12226962 12226963 + ORSiTERTOOT00226 792 0.0476 (138/2900) 0 * * Os_TE_290923 Chr5 12223295 12223296 + ORSiTERTOOT00034 791 0.0007 (2/2892) 0 * Os_TE_290922 Os_TE_290922 Chr5 12223291 12223290 + ORSiTERTOOT00034 791 0.0007 (2/2891) 0 * Os_TE_290923 Os_TE_290896 Chr5 12203629 12203628 + ORSiTERTOOT00226 792 0.0004 (1/2827) 0 * * Os_TE_290894 Chr5 12203275 12203274 + TRUNCATOR2_LTR 2904 0.0014 (4/2903) 0 * * Os_TE_290817 Chr5 12184128 12191476 + RIREX_LTR 8828 0.8437 (2493/2955) 1 Intact * Os_TE_290776 Chr5 12173646 12173647 + ORSiTERTOOT00226 792 0.0003 (1/2888) 0 * Os_TE_290775 Os_TE_290775 Chr5 12173642 12173641 - SZ-22_LTR 4403 0.0003 (1/2874) 0 * Os_TE_290776 Os_TE_290773 Chr5 12173430 12173431 + RIRE7_LTR 7615 0.0123 (36/2924) 0 * * Os_TE_290768 Chr5 12172509 12172510 - TRUNCATOR 2918 0.0118 (35/2962) 0 * * Os_TE_290572 Chr5 12116836 12116837 + ORSiTERTOOT00226 792 0.0007 (2/2992) 0 * * Os_TE_290514 Chr5 12092913 12092914 + CRM-LTR_OS 7749 0.0061 (18/2956) 0 * * Os_TE_290402 Chr5 12016720 12049401 + TRUNCATOR 2918 0.8452 (2495/2952) 1 Intact * Os_TE_290318 Chr5 11960290 11973174 - RETRO1_LTR 8314 0.8446 (2495/2954) 1 Intact * Os_TE_290021 Chr5 11792125 11792126 - SZ-22_LTR 4403 0.0013 (4/2990) 0 * Os_TE_290020 Os_TE_290020 Chr5 11792121 11792120 + ORSiTERTOOT00226 792 0.0013 (4/2990) 0 * Os_TE_290021 Os_TE_290012 Chr5 11788440 11788439 - ORSgTEMT00502171 134 0.0004 (1/2673) 0 * * Os_TE_289927 Chr5 11756800 11756799 - ORSgTETN00200001 10994 0.0027 (8/2979) 0 * * Os_TE_289857 Chr5 11740881 11740880 + ORSiTERTOOT00028 8600 0.0132 (39/2948) 0 * * Os_TE_289854 Chr5 11739128 11739127 - TRUNCATOR2_LTR 2904 0.0119 (35/2947) 0 * * Os_TE_289836 Chr5 11733210 11733211 + ORSiTERTOOT00034 791 0.0003 (1/2960) 0 * * Os_TE_289801 Chr5 11715372 11715373 + SZ-62LTR 3649 0.0050 (15/2997) 0 * Os_TE_289800 Os_TE_289800 Chr5 11715368 11715367 - SZ-62LTR 3649 0.0050 (15/2997) 0 * Os_TE_289801 Os_TE_289757 Chr5 11701827 11701828 - RIREX_LTR 8828 0.0084 (25/2964) 0 * Os_TE_289756 Os_TE_289756 Chr5 11701823 11701822 + RIREX_LTR 8828 0.0088 (26/2956) 0 * Os_TE_289757 Os_TE_289755 Chr5 11699034 11699035 + OSTE33 1012 0.0027 (8/2985) 0 * Os_TE_289754 Os_TE_289754 Chr5 11699025 11699024 + OSTE33 1012 0.0030 (9/2978) 0 * Os_TE_289755 Os_TE_289708 Chr5 11678932 11678933 + ORSiTERTOOT00174 2237 0.0003 (1/2985) 0 * * Os_TE_289700 Chr5 11673065 11673066 + SC-8_LTR 4951 0.0003 (1/2990) 0 * Os_TE_289699 Os_TE_289699 Chr5 11673061 11673060 - SC-8_LTR 4951 0.0003 (1/2993) 0 * Os_TE_289700 Os_TE_289690 Chr5 11667869 11667870 + TRUNCATOR 2918 0.1512 (441/2916) 0 * * Os_TE_289676 Chr5 11659647 11659646 + OSTE33 1012 0.0200 (31/1547) 0 * * Os_TE_289662 Chr5 11656559 11656560 + OSTE33 1012 0.0117 (35/2981) 0 * Os_TE_289661 Os_TE_289661 Chr5 11656550 11656549 + OSTE33 1012 0.0114 (34/2978) 0 * Os_TE_289662 Os_TE_289643 Chr5 11647023 11647024 + CRM-LTR_OS 7749 0.0003 (1/2996) 0 * Os_TE_289642 Os_TE_289642 Chr5 11647019 11647018 - CRM-LTR_OS 7749 0.0003 (1/2996) 0 * Os_TE_289643 Os_TE_289639 Chr5 11645836 11645837 + RIRE5-LTR_OS 6427 0.0104 (31/2986) 0 * * Os_TE_289635 Chr5 11645568 11645567 + TRUNCATOR 2918 0.0013 (4/2996) 0 * * Os_TE_289634 Chr5 11645233 11645234 - ORSgTERT00201216 11284 0.0120 (36/2999) 0 * Os_TE_289633 Os_TE_289633 Chr5 11645229 11645228 - RIRE2_LTR 11306 0.0117 (35/2999) 0 * Os_TE_289634 Os_TE_289603 Chr5 11626980 11626979 + TRUNCATOR 2918 0.0017 (5/2993) 0 * * Os_TE_289594 Chr5 11624534 11624535 + DS-RICE2N 613 0.0124 (37/2990) 0 * Os_TE_289593 Os_TE_289593 Chr5 11624527 11624526 - DS-RICE2N 613 0.0117 (35/2989) 0 * Os_TE_289594 Os_TE_289590 Chr5 11624049 11624050 - COPIA2-LTR_OS 6433 0.0117 (35/2988) 0 * Os_TE_289589 Os_TE_289589 Chr5 11624045 11624044 + COPIA2-LTR_OS 6433 0.0111 (33/2985) 0 * Os_TE_289590 Os_TE_289581 Chr5 11620656 11620657 + ORSiTERTOOT00226 792 0.0017 (5/2993) 0 * Os_TE_289580 Os_TE_289580 Chr5 11620652 11620651 - SZ-22_LTR 4403 0.0017 (5/2991) 0 * Os_TE_289581 Os_TE_289571 Chr5 11616478 11616477 - RIRE3_LTR 12054 0.0030 (9/2992) 0 * * Os_TE_289570 Chr5 11616402 11616403 + TRUNCATOR 2918 0.0128 (38/2977) 0 * * Os_TE_289566 Chr5 11615865 11615866 + SPMLIKE 10989 0.0098 (27/2749) 0 * * Os_TE_289561 Chr5 11612348 11612349 + ORSgTETNOOT00032 218 0.0098 (28/2864) 0 * * Os_TE_289560 Chr5 11611220 11611221 - NDNA1TNA_OS 334 0.0090 (27/2986) 0 * Os_TE_289559 Os_TE_289559 Chr5 11611218 11611217 + NDNA1TNA_OS 334 0.0087 (26/2986) 0 * Os_TE_289560 Os_TE_289428 Chr5 11482203 11482204 + RETROSAT2LTR 12796 0.0114 (34/2993) 0 * Os_TE_289427 Os_TE_289427 Chr5 11482201 11482200 - RETROSAT2LTR 12796 0.0120 (36/2995) 0 * Os_TE_289428 Os_TE_289420 Chr5 11480281 11480282 + RIREX_LTR 8828 0.0091 (27/2969) 0 * * Os_TE_289394 Chr5 11475000 11474999 + TRUNCATOR 2918 0.1694 (404/2385) 0 * * Os_TE_289364 Chr5 11466283 11466282 - SZ-40LTR 2465 0.1472 (441/2995) 0 * * Os_TE_289360 Chr5 11464439 11452508 - TRUNCATOR 2918 0.8291 (2436/2938) 1 Intact * Os_TE_289337 Chr5 11450398 11450399 - COPIA2-LTR_OS 6433 0.0005 (1/2088) 0 * * Os_TE_289336 Chr5 11449421 11449422 - ORSgTEMT02000041 194 0.1199 (348/2902) 0 * * Os_TE_289237 Chr5 11421403 11421404 - ORSiTERT00200154 9386 0.0047 (14/2987) 0 * Os_TE_289236 Os_TE_289236 Chr5 11421397 11421396 + TRUNCATOR 2918 0.0050 (15/2989) 0 * Os_TE_289237 Os_TE_289233 Chr5 11418810 11418811 - MPING 430 0.0003 (1/2997) 0 * Os_TE_289232 Os_TE_289232 Chr5 11418808 11418807 + MPING 430 0.0003 (1/2997) 0 * Os_TE_289233 Os_TE_289230 Chr5 11417419 11417418 + TRUNCATOR 2918 0.0274 (82/2992) 0 * * Os_TE_289226 Chr5 11415225 11415226 + RETRO2_LTR 12874 0.0030 (9/2994) 0 * Os_TE_289225 Os_TE_289225 Chr5 11415221 11415220 - RETRO2_LTR 12874 0.0030 (9/2987) 0 * Os_TE_289226 Os_TE_289212 Chr5 11408809 11408810 + ORSiTERTOOT00034 791 0.0003 (1/2984) 0 * Os_TE_289211 Os_TE_289211 Chr5 11408805 11408804 - SZ-22_LTR 4403 0.0003 (1/2981) 0 * Os_TE_289212 Os_TE_289195 Chr5 11404163 11404164 - RIRE3A_LTR 10580 0.0013 (4/2994) 0 * * Os_TE_289185 Chr5 11399127 11399128 + ORSiTERTOOT00034 791 0.0050 (15/2988) 0 * Os_TE_289184 Os_TE_289184 Chr5 11399123 11399122 - SZ-22_LTR 4403 0.0050 (15/2988) 0 * Os_TE_289185 Os_TE_289181 Chr5 11397775 11397776 - ORSgTERT00201216 11284 0.0233 (69/2963) 0 * Os_TE_289180 Os_TE_289180 Chr5 11397771 11397770 - RIRE2_LTR 11306 0.0237 (70/2957) 0 * Os_TE_289181 Os_TE_289148 Chr5 11370111 11363934 + COPIA2-LTR_OS 6433 0.8360 (2462/2945) 1 Intact Os_TE_289147 Os_TE_289147 Chr5 11363934 11370111 - COPIA2-LTR_OS 6433 0.8374 (2497/2982) 1 Intact Os_TE_289148 Os_TE_289141 Chr5 11360079 11360080 + ORSiTERTOOT00226 792 0.0242 (72/2976) 0 * * Os_TE_289086 Chr5 11340281 11340282 - RIRE2_LTR 11306 0.0131 (39/2975) 0 * * Os_TE_289076 Chr5 11338129 11338128 - ORSiTERT00100062 5674 0.0036 (9/2501) 0 * * Os_TE_289073 Chr5 11334911 11334910 - COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * * Os_TE_289072 Chr5 11334759 11334760 + COPIA2-LTR_OS 6433 0.0037 (11/2991) 0 * Os_TE_289071 Os_TE_289071 Chr5 11334755 11334754 - COPIA2-LTR_OS 6433 0.0037 (11/2990) 0 * Os_TE_289072 Os_TE_289065 Chr5 11333834 11333833 - RIRE2_LTR 11306 0.0121 (36/2984) 0 * * Os_TE_289064 Chr5 11332953 11332954 - TRUNCATOR2_LTR 2904 0.0003 (1/2993) 0 * * Os_TE_289062 Chr5 11332262 11332263 - EnSpm-11_OS 13126 0.0047 (14/2989) 0 * Os_TE_289061 Os_TE_289061 Chr5 11332260 11332259 + EnSpm-11_OS 13126 0.0047 (14/2983) 0 * Os_TE_289062 Os_TE_289049 Chr5 11325651 11325652 - SC-3_LTR 5748 0.0010 (3/2986) 0 * Os_TE_289048 Os_TE_289048 Chr5 11325647 11325646 + ORSiTERTOOT00296 5553 0.0013 (4/2982) 0 * Os_TE_289049 Os_TE_289035 Chr5 11319593 11319592 + ORSgTERT00200875 5747 0.0003 (1/2941) 0 * * Os_TE_288978 Chr5 11267769 11267770 + ORSiTERTOOT00034 791 0.0020 (6/2958) 0 * * Os_TE_288975 Chr5 11267229 11267228 + OSTE15 1168 0.1749 (523/2990) 0 * * Os_TE_288955 Chr5 11259911 11259912 - SC-3_LTR 5748 0.0007 (2/2989) 0 * Os_TE_288954 Os_TE_288954 Chr5 11259907 11259906 + ORSiTERTOOT00296 5553 0.0007 (2/2989) 0 * Os_TE_288955 Os_TE_288950 Chr5 11259406 11259193 + ORSgTEMT01400031 216 0.8419 (2290/2720) 1 Intact Os_TE_288947 Os_TE_288947 Chr5 11259160 11259404 - STOWAWAY9_OS 235 0.8461 (2336/2761) 1 Intact Os_TE_288950 Os_TE_288946 Chr5 11257476 11257477 - NDNA1TNA_OS 334 0.0238 (71/2981) 0 * Os_TE_288945 Os_TE_288945 Chr5 11257474 11257473 + NDNA1TNA_OS 334 0.0241 (72/2982) 0 * Os_TE_288946 Os_TE_288940 Chr5 11256980 11256981 - ORSgTEMT01702346 154 0.0003 (1/2992) 0 * * Os_TE_288846 Chr5 11204882 11204883 + SC-8_LTR 4951 0.0003 (1/2982) 0 * Os_TE_288845 Os_TE_288845 Chr5 11204878 11204877 - SC-8_LTR 4951 0.0003 (1/2985) 0 * Os_TE_288846 Os_TE_288844 Chr5 11204686 11204685 + ORSgTETNOOT00908 242 0.0091 (27/2972) 0 * * Os_TE_288843 Chr5 11204491 11204492 - SZ-54_LTR 5203 0.0114 (34/2983) 0 * * Os_TE_288833 Chr5 11200483 11200484 + SZ-4_LTR 5991 0.0003 (1/2953) 0 * * Os_TE_288830 Chr5 11199838 11199839 - CRM-LTR_OS 7749 0.0013 (4/2972) 0 * Os_TE_288829 Os_TE_288829 Chr5 11199834 11199833 + CRM-LTR_OS 7749 0.0013 (4/2973) 0 * Os_TE_288830 Os_TE_288779 Chr5 11181045 11181046 - RIREX_LTR 8828 0.0090 (27/2996) 0 * * Os_TE_288775 Chr5 11179734 11179733 + DS-RICE4N 715 0.0234 (70/2989) 0 * * Os_TE_288773 Chr5 11179222 11179221 - TRUNCATOR2_LTR 2904 0.0003 (1/2981) 0 * * Os_TE_288769 Chr5 11178384 11178383 - RIREX_LTR 8828 0.0125 (37/2964) 0 * * Os_TE_288766 Chr5 11177356 11177357 - RIREX_LTR 8828 0.0003 (1/2971) 0 * Os_TE_288765 Os_TE_288765 Chr5 11177352 11177351 + RIREX_LTR 8828 0.0003 (1/2965) 0 * Os_TE_288766 Os_TE_288764 Chr5 11177176 11177177 - NDNA1TNA_OS 334 0.0116 (34/2939) 0 * Os_TE_288763 Os_TE_288763 Chr5 11177174 11177173 + NDNA1TNA_OS 334 0.0113 (33/2932) 0 * Os_TE_288764 Os_TE_288723 Chr5 11155260 11155259 + ORSiCMCM00100014 10855 0.0004 (1/2824) 0 * * Os_TE_288722 Chr5 11155240 11155241 - COPIA2-LTR_OS 6433 0.0014 (4/2861) 0 * Os_TE_288721 Os_TE_288721 Chr5 11155236 11155235 + COPIA2-LTR_OS 6433 0.0014 (4/2852) 0 * Os_TE_288722 Os_TE_288676 Chr5 11115074 11115075 - COPIA2-LTR_OS 6433 0.0017 (5/2917) 0 * * Os_TE_288673 Chr5 11114282 11114283 - COPIA2-LTR_OS 6433 0.0003 (1/2933) 0 * Os_TE_288672 Os_TE_288672 Chr5 11114278 11114277 + COPIA2-LTR_OS 6433 0.0003 (1/2944) 0 * Os_TE_288673 Os_TE_288660 Chr5 11112500 11100438 + RIRE3_LTR 12054 0.8149 (2109/2588) -1 Intact Os_TE_288648 Os_TE_288648 Chr5 11100438 11112500 - RIRE3_LTR 12054 0.8432 (2490/2953) 1 Intact Os_TE_288660 Os_TE_288572 Chr5 11062944 11062945 + MuDR4_OS 7610 0.0013 (4/2970) 0 * Os_TE_288571 Os_TE_288571 Chr5 11062937 11062936 - MuDR4_OS 7610 0.0013 (4/2973) 0 * Os_TE_288572 Os_TE_288570 Chr5 11060696 11060697 - RIRE3_LTR 12054 0.0017 (5/2992) 0 * * Os_TE_288563 Chr5 11055102 11055103 - RIREX_LTR 8828 0.0121 (36/2986) 0 * Os_TE_288562 Os_TE_288562 Chr5 11055098 11055097 + RIREX_LTR 8828 0.0117 (35/2983) 0 * Os_TE_288563 Os_TE_288558 Chr5 11052320 11052321 + ORSgTEMT01601122 212 0.0208 (62/2974) 0 * * Os_TE_288557 Chr5 11050953 11050954 + SC-8_LTR 4951 0.0130 (39/2991) 0 * Os_TE_288556 Os_TE_288556 Chr5 11050949 11050948 - SC-8_LTR 4951 0.0130 (39/2993) 0 * Os_TE_288557 Os_TE_288543 Chr5 11043717 11043718 + ORSgTEMT01600726 235 0.0241 (72/2989) 0 * * Os_TE_288540 Chr5 11042514 11042515 - ORSgTEMT00600524 364 0.0230 (66/2874) 0 * Os_TE_288539 Os_TE_288539 Chr5 11042512 11042511 + ORSgTEMT00600272 361 0.0251 (73/2909) 0 * Os_TE_288540 Os_TE_288517 Chr5 11031383 11031384 - TRUNCATOR 2918 0.1385 (409/2954) 0 * * Os_TE_288493 Chr5 11024184 11024185 + INDITTO 263 0.0307 (90/2929) 0 * Os_TE_288492 Os_TE_288492 Chr5 11024182 11024181 - INDITTO 263 0.0302 (88/2916) 0 * Os_TE_288493 Os_TE_288478 Chr5 11011667 11012524 - MUDRN1_OS 764 0.8392 (2365/2818) 1 Intact * Os_TE_288451 Chr5 10999796 10999795 + TRUNCATOR 2918 0.0314 (93/2958) 0 * * Os_TE_288442 Chr5 10997522 10997521 - TRUNCATOR 2918 0.1326 (389/2934) 0 * Os_TE_288441 Os_TE_288441 Chr5 10997521 10997522 + TRUNCATOR 2918 0.1484 (443/2985) 0 * Os_TE_288442 Os_TE_288424 Chr5 10992529 10992530 - RIREX_LTR 8828 0.0087 (26/2983) 0 * Os_TE_288423 Os_TE_288423 Chr5 10992525 10992524 + RIREX_LTR 8828 0.0087 (26/2980) 0 * Os_TE_288424 Os_TE_288383 Chr5 10976236 10976237 - TRUNCATOR2_LTR 2904 0.0306 (89/2908) 0 * Os_TE_288382 Os_TE_288382 Chr5 10976232 10976231 + ORSiCMCM00100019 2717 0.0226 (65/2880) 0 * Os_TE_288383 Os_TE_288347 Chr5 10955129 10955130 + SC-8_LTR 4951 0.0010 (3/2991) 0 * Os_TE_288346 Os_TE_288346 Chr5 10955125 10955124 - SC-8_LTR 4951 0.0007 (2/2985) 0 * Os_TE_288347 Os_TE_288345 Chr5 10954773 10954774 + SC-8_LTR 4951 0.0003 (1/2994) 0 * Os_TE_288344 Os_TE_288344 Chr5 10954769 10954768 - SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_288345 Os_TE_288291 Chr5 10929610 10929609 + TRSA_OS 353 0.0004 (1/2550) 0 * * Os_TE_288276 Chr5 10922211 10922212 - SZ-22_LTR 4403 0.0003 (1/2944) 0 * * Os_TE_288206 Chr5 10898947 10898948 - RETRO2_LTR 12874 0.0013 (4/2971) 0 * Os_TE_288205 Os_TE_288205 Chr5 10898943 10898942 + ORSgTERTOOT00009 12852 0.0013 (4/2964) 0 * Os_TE_288206 Os_TE_288173 Chr5 10890668 10890669 + RIREX_LTR 8828 0.0033 (10/2986) 0 * Os_TE_288172 Os_TE_288172 Chr5 10890664 10890663 - RIREX_LTR 8828 0.0030 (9/2991) 0 * Os_TE_288173 Os_TE_288148 Chr5 10882242 10871277 - SZ-35LTR 3853 0.8431 (2478/2939) 1 Intact * Os_TE_288121 Chr5 10870014 10870013 - STOWAWAY44_OS 240 0.0980 (291/2969) 0 * * Os_TE_288109 Chr5 10859692 10859691 + OLO24 345 0.0017 (5/2992) 0 * * Os_TE_288107 Chr5 10859110 10859109 + COPIA2-LTR_OS 6433 0.0919 (255/2776) 0 * * Os_TE_288066 Chr5 10838474 10838473 + ORSiTERTOOT00027 10853 0.0582 (140/2407) 0 * * Os_TE_288035 Chr5 10820084 10820085 + AMYLTP 383 0.1417 (420/2965) 0 * Os_TE_288034 Os_TE_288034 Chr5 10820076 10820075 - AMYLTP 383 0.1457 (433/2972) 0 * Os_TE_288035 Os_TE_288026 Chr5 10817252 10817253 - RETRO2_LTR 12874 0.1607 (473/2943) 0 * Os_TE_288025 Os_TE_288025 Chr5 10817248 10817247 + RETRO2_LTR 12874 0.1593 (468/2937) 0 * Os_TE_288026 Os_TE_288018 Chr5 10812393 10812394 - ORSgTERT00201216 11284 0.0114 (34/2984) 0 * Os_TE_288017 Os_TE_288017 Chr5 10812389 10812388 - RIRE2_LTR 11306 0.0124 (37/2985) 0 * Os_TE_288018 Os_TE_288016 Chr5 10812223 10812222 + ENSPM4_OS 11610 0.0118 (35/2957) 0 * * Os_TE_287996 Chr5 10805826 10805827 - SC-3_LTR 5748 0.0003 (1/2937) 0 * Os_TE_287995 Os_TE_287995 Chr5 10805822 10805821 + ORSiTERTOOT00296 5553 0.0003 (1/2938) 0 * Os_TE_287996 Os_TE_287977 Chr5 10797620 10797621 + MUDRN5_OS 374 0.0003 (1/2971) 0 * * Os_TE_287929 Chr5 10779609 10780573 + SZ-9LTR 965 0.8646 (2427/2807) 1 Intact * Os_TE_287920 Chr5 10776470 10776253 + ORSgTEMT02400034 225 0.8282 (2463/2974) 1 Intact Os_TE_287919 Os_TE_287919 Chr5 10776245 10776469 + ORSgTEMT02400206 225 0.8285 (2454/2962) 1 Intact Os_TE_287920 Os_TE_287881 Chr5 10764223 10764222 - TRUNCATOR 2918 0.0020 (6/2997) 0 * Os_TE_287880 Os_TE_287880 Chr5 10764222 10764223 + TRUNCATOR 2918 0.0020 (6/2995) 0 * Os_TE_287881 Os_TE_287849 Chr5 10754498 10732059 - ORSgTETN00200001 10994 0.8196 (2349/2866) 1 Intact Os_TE_287839 Os_TE_287839 Chr5 10732056 10754498 + CACTA-B 1103 0.8288 (2435/2938) 1 Intact Os_TE_287849 Os_TE_287830 Chr5 10727567 10727568 - RETROSAT2LTR 12796 0.0065 (18/2763) 0 * * Os_TE_287805 Chr5 10718799 10718800 - OSTE20 496 0.0206 (59/2862) 0 * Os_TE_287804 Os_TE_287804 Chr5 10718795 10718794 - OSTE20 496 0.0155 (44/2843) 0 * Os_TE_287805 Os_TE_287803 Chr5 10718652 10718651 + TRUNCATOR 2918 0.0015 (4/2732) 0 * * Os_TE_287793 Chr5 10716102 10716103 - MUDRN1_OS 764 0.0044 (13/2923) 0 * * Os_TE_287742 Chr5 10676123 10678856 + TRUNCATOR 2918 0.8289 (2480/2992) 1 Intact * Os_TE_287734 Chr5 10673990 10673991 + ORSgTEMT01702158 154 0.0003 (1/2927) 0 * * Os_TE_287719 Chr5 10670407 10664700 + ORSiCMCM00100017 5674 0.8309 (2477/2981) 1 Intact * Os_TE_287718 Chr5 10670402 10670401 + RIRE3_LTR 12054 0.1049 (312/2974) 0 * * Os_TE_287705 Chr5 10642998 10642999 + ORSiCMCM00100019 2717 0.0014 (4/2926) 0 * * Os_TE_287703 Chr5 10642940 10642941 - RIRE2_LTR 11306 0.0017 (5/2924) 0 * Os_TE_287702 Os_TE_287702 Chr5 10642936 10642935 + RIRE2_LTR 11306 0.0017 (5/2925) 0 * Os_TE_287703 Os_TE_287695 Chr5 10641843 10641842 - ORSgTERT00100700 232 0.0020 (6/2966) 0 * * Os_TE_287484 Chr5 10539429 10539430 + TRUNCATOR2_LTR 2904 0.0003 (1/2969) 0 * Os_TE_287483 Os_TE_287483 Chr5 10539425 10539424 - TRUNCATOR2_LTR 2904 0.0007 (2/2970) 0 * Os_TE_287484 Os_TE_287474 Chr5 10536091 10536092 + RIRE3_LTR 12054 0.0116 (34/2940) 0 * * Os_TE_287459 Chr5 10528850 10528851 - OSMU5 4881 0.0003 (1/2966) 0 * * Os_TE_287164 Chr5 10409021 10409020 - RIRE3A_LTR 10580 0.0360 (102/2835) 0 * * Os_TE_287152 Chr5 10403341 10403340 + ORSgTEMT00101674 340 0.0064 (19/2962) 0 * * Os_TE_286850 Chr5 10271260 10271261 + RIREX_LTR 8828 0.0045 (13/2876) 0 * Os_TE_286849 Os_TE_286849 Chr5 10271256 10271255 - RIREX_LTR 8828 0.0041 (12/2954) 0 * Os_TE_286850 Os_TE_286805 Chr5 10247187 10247186 + OSTE33 1012 0.0082 (24/2919) 0 * * Os_TE_286800 Chr5 10241000 10241001 - ORSgTEMT01400023 211 0.0003 (1/2954) 0 * * Os_TE_286588 Chr5 10137559 10137560 - RIRE3A_LTR 10580 0.0098 (27/2768) 0 * * Os_TE_286564 Chr5 10128216 10128215 - ORSgTETN00200001 10994 0.0003 (1/2967) 0 * * Os_TE_286558 Chr5 10124772 10124771 + DS-RICE4N 715 0.0077 (23/2992) 0 * * Os_TE_286556 Chr5 10124566 10124567 + CACTA-H 1152 0.0007 (2/2939) 0 * * Os_TE_286553 Chr5 10124308 10124309 + ORSgTEMT02300007 256 0.0072 (20/2769) 0 * * Os_TE_286526 Chr5 10112095 10112096 + RIREX_LTR 8828 0.0125 (37/2967) 0 * Os_TE_286525 Os_TE_286525 Chr5 10112091 10112090 - RIREX_LTR 8828 0.0125 (37/2965) 0 * Os_TE_286526 Os_TE_286520 Chr5 10110994 10110993 - ORSiTERTOOT00274 4749 0.0007 (2/2974) 0 * * Os_TE_286518 Chr5 10110758 10110759 + RIRE3A_LTR 10580 0.0061 (18/2972) 0 * Os_TE_286517 Os_TE_286517 Chr5 10110754 10110753 - RIRE3A_LTR 10580 0.0061 (18/2966) 0 * Os_TE_286518 Os_TE_285875 Chr5 9778592 9778593 + COPI2_LTR 4733 0.0027 (8/2992) 0 * Os_TE_285874 Os_TE_285874 Chr5 9778588 9778587 - COPI2_LTR 4733 0.0027 (8/2983) 0 * Os_TE_285875 Os_TE_285751 Chr5 9722586 9722587 + ORSiTERTOOT00028 8600 0.0044 (13/2985) 0 * Os_TE_285750 Os_TE_285750 Chr5 9722582 9722581 - TRUNCATOR2_LTR 2904 0.0050 (15/2985) 0 * Os_TE_285751 Os_TE_285749 Chr5 9722336 9722337 - SZ-40LTR 2465 0.0047 (14/2991) 0 * * Os_TE_285712 Chr5 9713512 9713513 - ORSiTERT00200154 9386 0.0084 (25/2986) 0 * Os_TE_285711 Os_TE_285711 Chr5 9713506 9713505 + TRUNCATOR 2918 0.0090 (27/2985) 0 * Os_TE_285712 Os_TE_285708 Chr5 9712998 9712999 + ORSiCMCM00100019 2717 0.0003 (1/2987) 0 * Os_TE_285707 Os_TE_285707 Chr5 9712994 9712993 - TRUNCATOR2_LTR 2904 0.0003 (1/2987) 0 * Os_TE_285708 Os_TE_285685 Chr5 9691036 9691037 + SPMLIKE 10989 0.1115 (330/2960) 0 * * Os_TE_285683 Chr5 9690757 9690758 - ORSgTETN00200001 10994 0.0064 (19/2988) 0 * Os_TE_285682 Os_TE_285682 Chr5 9690755 9690754 + SPMLIKE 10989 0.0067 (20/2988) 0 * Os_TE_285683 Os_TE_285658 Chr5 9684656 9684655 + TRUNCATOR 2918 0.0067 (20/2993) 0 * Os_TE_285657 Os_TE_285657 Chr5 9684655 9684656 - TRUNCATOR 2918 0.0064 (19/2986) 0 * Os_TE_285658 Os_TE_285568 Chr5 9639938 9639939 + ENSPM6_OS 9815 0.0085 (25/2946) 0 * * Os_TE_285561 Chr5 9637851 9637850 - RIRE3_LTR 12054 0.0071 (21/2970) 0 * * Os_TE_285546 Chr5 9624994 9613459 - RIRE3A_LTR 10580 0.8129 (2429/2988) 1 Intact Os_TE_285543 Os_TE_285543 Chr5 9613459 9624994 + RIRE3A_LTR 10580 0.8092 (2396/2961) 1 Intact Os_TE_285546 Os_TE_285515 Chr5 9596091 9596092 + TRUNCATOR 2918 0.0528 (158/2993) 0 * * Os_TE_285513 Chr5 9595846 9595845 - ORSiTERTOOT00396 5939 0.0076 (22/2897) 0 * * Os_TE_285508 Chr5 9592805 9592806 - SC-8_LTR 4951 0.0003 (1/2977) 0 * * Os_TE_285472 Chr5 9583217 9583218 - TRUNCATOR 2918 0.0064 (18/2801) 0 * * Os_TE_285384 Chr5 9543550 9543551 - RIREX_LTR 8828 0.0074 (22/2966) 0 * * Os_TE_285376 Chr5 9542886 9542887 + RIRE7_LTR 7615 0.1476 (432/2926) 0 * Os_TE_285375 Os_TE_285375 Chr5 9542882 9542881 - RIRE7_LTR 7615 0.1474 (431/2924) 0 * Os_TE_285376 Os_TE_285369 Chr5 9542090 9542091 - RIRE3A_LTR 10580 0.0003 (1/2989) 0 * Os_TE_285368 Os_TE_285368 Chr5 9542086 9542085 + ORSiTERTOOT00027 10853 0.0003 (1/2988) 0 * Os_TE_285369 Os_TE_285315 Chr5 9529998 9529999 - RETROSAT2LTR 12796 0.0048 (14/2938) 0 * Os_TE_285314 Os_TE_285314 Chr5 9529996 9529995 + RETROSAT2LTR 12796 0.0064 (19/2975) 0 * Os_TE_285315 Os_TE_285313 Chr5 9529966 9529965 - TRUNCATOR 2918 0.0765 (228/2982) 0 * Os_TE_285312 Os_TE_285312 Chr5 9529965 9529966 + TRUNCATOR 2918 0.0788 (235/2984) 0 * Os_TE_285313 Os_TE_285305 Chr5 9522252 9522253 + ORSiTERTOOT00296 5553 0.0031 (9/2908) 0 * Os_TE_285304 Os_TE_285304 Chr5 9522248 9522247 - SC-3_LTR 5748 0.0031 (9/2897) 0 * Os_TE_285305 Os_TE_285284 Chr5 9499578 9498042 - MUDRN3_OS 903 0.8248 (2430/2946) 1 Intact Os_TE_285283 Os_TE_285283 Chr5 9498037 9499578 - MUDRN3_OS 903 0.8265 (2449/2963) 1 Intact Os_TE_285284 Os_TE_285282 Chr5 9497500 9497501 - ORSgTETN00200001 10994 0.0003 (1/2967) 0 * * Os_TE_285270 Chr5 9492585 9492586 - MuDR4_OS 7610 0.0181 (52/2878) 0 * Os_TE_285269 Os_TE_285269 Chr5 9492578 9492577 - MuDR4_OS 7610 0.0177 (51/2889) 0 * Os_TE_285270 Os_TE_285267 Chr5 9491621 9480323 - ORSgTERT00201216 11284 0.7574 (2245/2964) 1 Intact Os_TE_285256 Os_TE_285256 Chr5 9480323 9491621 - RIRE2_LTR 11306 0.7562 (2239/2961) 1 Intact Os_TE_285267 Os_TE_285249 Chr5 9478717 9478716 - RIREX_LTR 8828 0.0863 (239/2770) 0 * * Os_TE_285235 Chr5 9466894 9466895 - YOUREN 286 0.0013 (4/2977) 0 * Os_TE_285234 Os_TE_285234 Chr5 9466892 9466891 + YOUREN 286 0.0013 (4/2983) 0 * Os_TE_285235 Os_TE_285224 Chr5 9463760 9463761 - TRUNCATOR2_LTR 2904 0.0517 (154/2976) 0 * * Os_TE_285220 Chr5 9462883 9462884 + ORSgTEMT04600037 279 0.0007 (2/2958) 0 * Os_TE_285219 Os_TE_285219 Chr5 9462877 9462876 - ORSgTEMT04600010 284 0.0003 (1/2959) 0 * Os_TE_285220 Os_TE_285217 Chr5 9461935 9461934 + STOWAWAY51_OS 246 0.0014 (4/2898) 0 * Os_TE_285216 Os_TE_285216 Chr5 9461929 9461930 - STOWAWAY51_OS 246 0.0017 (5/2921) 0 * Os_TE_285217 Os_TE_285213 Chr5 9461467 9461142 + NDNA1TNA_OS 334 0.8203 (2250/2743) 1 Intact Os_TE_285211 Os_TE_285211 Chr5 9461133 9461468 + ORSgTEMT00101674 340 0.8365 (2450/2929) 1 Intact Os_TE_285213 Os_TE_285210 Chr5 9461093 9461094 - MDR2 6967 0.0369 (108/2929) 0 * Os_TE_285209 Os_TE_285209 Chr5 9461083 9461082 + MDR2 6967 0.0369 (107/2896) 0 * Os_TE_285210 Os_TE_285206 Chr5 9460502 9460501 + TRUNCATOR 2918 0.0114 (18/1584) -1 * * Os_TE_285153 Chr5 9447011 9447012 - OSTE33 1012 0.0238 (71/2985) 0 * * Os_TE_285152 Chr5 9446737 9446736 - TRUNCATOR2_LTR 2904 0.1270 (380/2991) 0 * * Os_TE_285148 Chr5 9444893 9444894 - RETRO2_LTR 12874 0.0068 (20/2959) 0 * * Os_TE_285143 Chr5 9443546 9443545 + COPIA2-LTR_OS 6433 0.0080 (24/2991) 0 * * Os_TE_285129 Chr5 9432376 9432377 - OSTE24 683 0.0664 (197/2967) 0 * * Os_TE_285117 Chr5 9428637 9428638 - ORSgTEMT01601432 239 0.0014 (4/2942) 0 * * Os_TE_285080 Chr5 9401125 9401126 + ORSiCMCM00100019 2717 0.0738 (204/2764) 0 * * Os_TE_285074 Chr5 9399913 9399914 - TRUNCATOR2_LTR 2904 0.0003 (1/2991) 0 * * Os_TE_284895 Chr5 9331181 9331180 - TRUNCATOR 2918 0.0071 (21/2941) 0 * * Os_TE_284881 Chr5 9322611 9319437 - RIRE3A_LTR 10580 0.7549 (2236/2962) 1 Solo_LTR Os_TE_284878 Os_TE_284878 Chr5 9319437 9322611 + RIRE3A_LTR 10580 0.7507 (2189/2916) 1 Solo_LTR Os_TE_284881 Os_TE_284875 Chr5 9319234 9319235 + RIREX_LTR 8828 0.0003 (1/2977) 0 * Os_TE_284874 Os_TE_284874 Chr5 9319230 9319229 - RIREX_LTR 8828 0.0003 (1/2972) 0 * Os_TE_284875 Os_TE_284865 Chr5 9317295 9317294 - TRUNCATOR 2918 0.0007 (2/2959) 0 * Os_TE_284864 Os_TE_284864 Chr5 9317294 9317295 + TRUNCATOR 2918 0.0007 (2/2953) 0 * Os_TE_284865 Os_TE_284834 Chr5 9306535 9306534 + OSTE33 1012 0.0333 (98/2942) 0 * * Os_TE_284819 Chr5 9294673 9294674 + RIREX_LTR 8828 0.0024 (7/2976) 0 * * Os_TE_284765 Chr5 9265752 9247518 - ORSgTETN00200001 10994 0.7102 (1833/2581) 1 Intact Os_TE_284752 Os_TE_284752 Chr5 9247515 9265752 + CACTA-B 1103 0.7402 (2074/2802) 1 Intact Os_TE_284765 Os_TE_284739 Chr5 9243590 9243591 - SZ-36LTR 5825 0.0094 (28/2968) 0 * Os_TE_284738 Os_TE_284738 Chr5 9243586 9243585 + SZ-36LTR 5825 0.0094 (28/2965) 0 * Os_TE_284739 Os_TE_284736 Chr5 9242751 9242752 - ORSiTETNOOT00134 607 0.0003 (1/2968) 0 * Os_TE_284735 Os_TE_284735 Chr5 9242744 9242743 + TWIF 586 0.0003 (1/2967) 0 * Os_TE_284736 Os_TE_284734 Chr5 9242646 9242645 - RETROSAT2LTR 12796 0.0805 (240/2981) 0 * * Os_TE_284719 Chr5 9230488 9230225 - INDITTO 263 0.7408 (2215/2990) 1 Intact Os_TE_284718 Os_TE_284718 Chr5 9230225 9230487 - ORSgTETNOOT02417 265 0.7355 (2174/2956) 1 Intact Os_TE_284719 Os_TE_284716 Chr5 9228432 9228433 + ORSgTETNOOT00908 242 0.0003 (1/2982) 0 * * Os_TE_284698 Chr5 9225592 9225593 - COPIA2-LTR_OS 6433 0.0003 (1/2971) 0 * Os_TE_284697 Os_TE_284697 Chr5 9225588 9225587 + COPIA2-LTR_OS 6433 0.0003 (1/2961) 0 * Os_TE_284698 Os_TE_284684 Chr5 9220476 9220475 + ORSiTERTOOT00226 792 0.0003 (1/2952) 0 * * Os_TE_284682 Chr5 9220249 9220248 - NDNA1TNA_OS 334 0.0068 (20/2961) 0 * * Os_TE_284641 Chr5 9200183 9200184 + TRUNCATOR 2918 0.0003 (1/2996) 0 * Os_TE_284640 Os_TE_284640 Chr5 9200177 9200176 - ORSiTERT00200154 9386 0.0003 (1/2995) 0 * Os_TE_284641 Os_TE_284630 Chr5 9197621 9197622 + F569 228 0.0071 (21/2970) 0 * Os_TE_284629 Os_TE_284629 Chr5 9197619 9197618 - F569 228 0.0071 (21/2968) 0 * Os_TE_284630 Os_TE_284595 Chr5 9188127 9188128 + TWIF 586 0.0003 (1/2966) 0 * * Os_TE_284563 Chr5 9178682 9178683 + RIRE2_LTR 11306 0.0063 (19/2994) 0 * Os_TE_284562 Os_TE_284562 Chr5 9178678 9178677 - RIRE2_LTR 11306 0.0070 (21/2997) 0 * Os_TE_284563 Os_TE_284551 Chr5 9174800 9174801 - MuDR3_OS 8604 0.0739 (220/2976) 0 * Os_TE_284550 Os_TE_284550 Chr5 9174792 9174791 + MuDR3_OS 8604 0.0731 (217/2968) 0 * Os_TE_284551 Os_TE_284534 Chr5 9168512 9168513 - RIRE3_LTR 12054 0.0004 (1/2457) 0 * * Os_TE_284529 Chr5 9164133 9164134 - ORSiTERT00200154 9386 0.0413 (123/2979) 0 * * Os_TE_284510 Chr5 9156115 9156116 - OSTE33 1012 0.1896 (541/2853) 0 * Os_TE_284509 Os_TE_284509 Chr5 9156106 9156105 + OSTE33 1012 0.2339 (699/2989) 0 * Os_TE_284510 Os_TE_284477 Chr5 9142664 9142665 - COPI2_LTR 4733 0.0003 (1/2965) 0 * * Os_TE_284470 Chr5 9140460 9139602 + RIRE7_LTR 7615 0.6883 (2034/2955) 1 Solo_LTR Os_TE_284464 Os_TE_284464 Chr5 9139602 9140460 - RIRE7_LTR 7615 0.6881 (2027/2946) 1 Solo_LTR Os_TE_284470 Os_TE_284458 Chr5 9134783 9134784 - GYPSI_LTR 18003 0.0020 (6/2967) 0 * * Os_TE_284453 Chr5 9132744 9132743 + SC9A_LTR 5300 0.1714 (508/2964) 0 * * Os_TE_284452 Chr5 9131823 9131824 - SZ-62LTR 3649 0.0003 (1/2953) 0 * Os_TE_284451 Os_TE_284451 Chr5 9131819 9131818 + SZ-62LTR 3649 0.0003 (1/2954) 0 * Os_TE_284452 Os_TE_284440 Chr5 9130010 9130011 + TWIFBIG 3567 0.0662 (189/2856) 0 * Os_TE_284439 Os_TE_284439 Chr5 9130003 9130002 - ORSiTETNOOT00216 3569 0.0501 (141/2813) 0 * Os_TE_284440 Os_TE_284438 Chr5 9129595 9129596 + TWIFBIG 3567 0.0087 (25/2866) 0 * Os_TE_284437 Os_TE_284437 Chr5 9129588 9129587 - ORSiTETNOOT00216 3569 0.0003 (1/2880) 0 * Os_TE_284438 Os_TE_284435 Chr5 9129139 9129138 + COPIA2-LTR_OS 6433 0.0034 (10/2960) 0 * * Os_TE_284397 Chr5 9109663 9109664 - ORSiTETNOOT00216 3569 0.0038 (9/2355) 0 * Os_TE_284396 Os_TE_284396 Chr5 9109656 9109655 + TWIFBIG 3567 0.0068 (16/2367) 0 * Os_TE_284397 Os_TE_284395 Chr5 9108522 9108523 + COPI2_LTR 4733 0.0070 (21/2995) 0 * Os_TE_284394 Os_TE_284394 Chr5 9108518 9108517 - COPI2_LTR 4733 0.0070 (21/2994) 0 * Os_TE_284395 Os_TE_284390 Chr5 9106454 9106455 + COPI2_LTR 4733 0.0044 (13/2980) 0 * * Os_TE_284370 Chr5 9096190 9096191 + ORSiTERTOOT00028 8600 0.0067 (20/2976) 0 * Os_TE_284369 Os_TE_284369 Chr5 9096186 9096185 - TRUNCATOR2_LTR 2904 0.0067 (20/2977) 0 * Os_TE_284370 Os_TE_284336 Chr5 9080298 9080299 + RIRE3_LTR 12054 0.0067 (20/2992) 0 * * Os_TE_284335 Chr5 9079355 9073508 - SZ-36LTR 5825 0.6680 (2000/2994) 0.68 Intact * Os_TE_284322 Chr5 9057855 9057854 + TRUNCATOR 2918 0.1526 (456/2989) 0 * * Os_TE_284291 Chr5 9038837 9037979 - MUDRN1_OS 764 0.6637 (1956/2947) 1 Intact * Os_TE_284273 Chr5 9021861 9033163 - RIRE2_LTR 11306 0.6683 (1999/2991) 1 Intact * Os_TE_284270 Chr5 9021423 9021422 + TRUNCATOR 2918 0.0143 (39/2720) 0 * * Os_TE_284228 Chr5 9005173 9005172 + TRUNCATOR 2918 0.0064 (19/2973) 0 * Os_TE_284227 Os_TE_284227 Chr5 9005172 9005173 - TRUNCATOR 2918 0.0064 (19/2987) 0 * Os_TE_284228 Os_TE_284222 Chr5 9002564 9002565 - SZ-40LTR 2465 0.0003 (1/2964) 0 * Os_TE_284221 Os_TE_284221 Chr5 9002560 9002559 + SZ-40LTR 2465 0.0003 (1/2974) 0 * Os_TE_284222 Os_TE_284214 Chr5 8997147 8997146 + TRUNCATOR 2918 0.0059 (16/2708) 0 * * Os_TE_284211 Chr5 8995543 8991432 - TRUNCATOR2_LTR 2904 0.6866 (1987/2894) 1 Intact * Os_TE_284177 Chr5 8976387 8976386 + TRUNCATOR 2918 0.0123 (37/2998) 0 * Os_TE_284176 Os_TE_284176 Chr5 8976386 8976387 - TRUNCATOR 2918 0.0117 (35/2997) 0 * Os_TE_284177 Os_TE_284137 Chr5 8956909 8956910 + AMYLTP 383 0.0013 (4/2995) 0 * Os_TE_284136 Os_TE_284136 Chr5 8956901 8956900 - AMYLTP 383 0.0013 (4/2996) 0 * Os_TE_284137 Os_TE_284129 Chr5 8955343 8955342 - TRUNCATOR 2918 0.0003 (1/2987) 0 * * Os_TE_284085 Chr5 8928702 8928703 - TRUNCATOR 2918 0.0093 (27/2917) 0 * * Os_TE_284084 Chr5 8927801 8921411 - RIRE5-LTR_OS 6427 0.4666 (1395/2990) 1 Intact Os_TE_284076 Os_TE_284076 Chr5 8921411 8927800 + RIRE5-LTR_OS 6427 0.4534 (1339/2953) 1 Intact Os_TE_284084 Os_TE_284067 Chr5 8916699 8916700 - COPIA2-LTR_OS 6433 0.0003 (1/2977) 0 * Os_TE_284066 Os_TE_284066 Chr5 8916695 8916694 + COPIA2-LTR_OS 6433 0.0003 (1/2964) 0 * Os_TE_284067 Os_TE_284043 Chr5 8911131 8911130 - NDNA2TNA_OS 346 0.0010 (3/2968) 0 * * Os_TE_284034 Chr5 8908937 8908938 + RIRE3_LTR 12054 0.0061 (18/2933) 0 * Os_TE_284033 Os_TE_284033 Chr5 8908933 8908932 - RIRE3_LTR 12054 0.0129 (38/2956) 0 * Os_TE_284034 Os_TE_284023 Chr5 8901401 8901400 + RETROSAT2LTRA 3112 0.1037 (310/2989) 0 * * Os_TE_284022 Chr5 8901385 8901386 + TRUNCATOR 2918 0.0773 (231/2988) 0 * * Os_TE_284012 Chr5 8899443 8899601 - UNIQUE 158 0.8983 (2658/2959) 1 Intact * Os_TE_283983 Chr5 8883111 8883112 + ORSiTERTOOT00296 5553 0.0003 (1/2989) 0 * Os_TE_283982 Os_TE_283982 Chr5 8883107 8883106 - SC-3_LTR 5748 0.0003 (1/2989) 0 * Os_TE_283983 Os_TE_283938 Chr5 8866999 8867000 + RETROSAT4_LTR 13504 0.2756 (719/2609) 0 * Os_TE_283937 Os_TE_283937 Chr5 8866995 8866994 - SZ-35LTR 3853 0.3845 (1148/2986) 0 * Os_TE_283938 Os_TE_283934 Chr5 8866122 8866123 - TELIA 141 0.0003 (1/2983) 0 * Os_TE_283933 Os_TE_283933 Chr5 8866114 8866113 + TELIA 141 0.0003 (1/2980) 0 * Os_TE_283934 Os_TE_283926 Chr5 8861850 8861849 - MuDR-5_OS 17471 0.0017 (5/2958) 0 * * Os_TE_283915 Chr5 8860193 8860192 - RETROSAT2LTR 12796 0.0938 (280/2984) 0 * * Os_TE_283881 Chr5 8847015 8847016 + COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_283880 Os_TE_283880 Chr5 8847011 8847010 - COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_283881 Os_TE_283872 Chr5 8841732 8841731 - ORSgTETNOOT02417 265 0.0004 (1/2721) 0 * * Os_TE_283869 Chr5 8840541 8840542 + ORSgTEMT00101674 340 0.0868 (249/2868) 0 * * Os_TE_283868 Chr5 8840363 8840362 + ORSgTEMT01601122 212 0.2481 (730/2942) 0 * Os_TE_283867 Os_TE_283867 Chr5 8840360 8840361 + ORSgTEMT01601122 212 0.2533 (754/2977) 0 * Os_TE_283868 Os_TE_283866 Chr5 8840303 8840302 + STOWAWAY9_OS 235 0.0815 (243/2981) 0 * * Os_TE_283865 Chr5 8838586 8838585 + BUHUI 375 0.0569 (165/2898) 0 * * Os_TE_283864 Chr5 8838097 8789790 + SPMLIKE 10989 0.4978 (1375/2762) 1 Intact Os_TE_283751 Os_TE_283751 Chr5 8789790 8838098 - ORSgTETN00200001 10994 0.4845 (1311/2706) 1 Intact Os_TE_283864 Os_TE_283749 Chr5 8789714 8789715 - RIREX_LTR 8828 0.0159 (41/2577) 0 * * Os_TE_283737 Chr5 8788386 8788385 - ORSgTEMT01601208 238 0.0795 (217/2729) 0 * Os_TE_283736 Os_TE_283736 Chr5 8788383 8788384 - ORSgTEMT01600639 228 0.0848 (230/2712) 0 * Os_TE_283737 Os_TE_283728 Chr5 8781023 8781024 + STOWAWAY15-2_OS 145 0.0008 (2/2572) -1 * * Os_TE_283723 Chr5 8777322 8777087 - ORSgTEMT01601881 239 0.6762 (2013/2977) 1 Intact Os_TE_283722 Os_TE_283722 Chr5 8777083 8777321 + TREP215 239 0.6731 (1995/2964) 1 Intact Os_TE_283723 Os_TE_283721 Chr5 8776990 8776991 + COPI2_LTR 4733 0.0003 (1/2972) 0 * * Os_TE_283719 Chr5 8776207 8776206 + TYPEH 309 0.3336 (994/2980) 0 * * Os_TE_283716 Chr5 8772263 8772264 + COPIA1-LTR_OS 9292 0.0020 (6/2988) 0 * Os_TE_283715 Os_TE_283715 Chr5 8772259 8772258 - SZ-5LTR 1223 0.0020 (6/2990) 0 * Os_TE_283716 Os_TE_283713 Chr5 8770677 8770678 - RIREX_LTR 8828 0.0003 (1/2983) 0 * Os_TE_283712 Os_TE_283712 Chr5 8770673 8770672 + RIREX_LTR 8828 0.0003 (1/2991) 0 * Os_TE_283713 Os_TE_283700 Chr5 8766804 8759321 + SZ-43LTR 4039 0.5392 (1397/2591) 1 Intact Os_TE_283685 Os_TE_283685 Chr5 8759321 8766804 - SZ-43LTR 4039 0.4608 (1375/2984) 1 Intact Os_TE_283700 Os_TE_283679 Chr5 8757926 8757927 - ORSiCMCM00100013 9728 0.2057 (605/2941) 0 * Os_TE_283678 Os_TE_283678 Chr5 8757922 8757921 + ORSiCMCM00100013 9728 0.2222 (665/2993) 0 * Os_TE_283679 Os_TE_283674 Chr5 8756968 8756969 + SZ-40LTR 2465 0.0883 (264/2989) 0 * Os_TE_283673 Os_TE_283673 Chr5 8756964 8756963 - SZ-40LTR 2465 0.0883 (264/2991) 0 * Os_TE_283674 Os_TE_283671 Chr5 8756206 8756207 - TRUNCATOR 2918 0.0854 (255/2986) 0 * * Os_TE_283654 Chr5 8749151 8749152 - RIREX_LTR 8828 0.0003 (1/2993) 0 * * Os_TE_283614 Chr5 8729807 8717595 - RETROSAT2LTR 12796 0.4636 (1382/2981) 1 Intact * Os_TE_283587 Chr5 8716924 8708547 - RIREX_LTR 8828 0.4656 (1379/2962) 1 Intact * Os_TE_283580 Chr5 8708526 8708525 + RIRE2_LTR 11306 0.1790 (331/1849) 0 * * Os_TE_283541 Chr5 8684213 8684214 + ORSiTERTOOT00112 4608 0.2853 (550/1928) 0 * Os_TE_283540 Os_TE_283540 Chr5 8684209 8684208 + ORSiTERTOOT00112 4608 0.4267 (998/2339) 0 * Os_TE_283541 Os_TE_283539 Chr5 8684180 8681075 - ENSPM_OS 9843 0.7500 (1395/1860) 1 Intact * Os_TE_283535 Chr5 8678697 8678698 - TYPEM 227 0.0084 (25/2981) 0 * Os_TE_283534 Os_TE_283534 Chr5 8678696 8678695 - ORSgTEMT02400179 221 0.0084 (25/2980) 0 * Os_TE_283535 Os_TE_283526 Chr5 8672865 8672866 - ORSgTERT00200916 5990 0.0004 (1/2640) 0 * * Os_TE_283525 Chr5 8672846 8672845 - TRUNCATOR 2918 0.1535 (425/2769) 0 * * Os_TE_283524 Chr5 8672845 8672846 + TRUNCATOR 2918 0.1389 (379/2729) 0 * * Os_TE_283490 Chr5 8662841 8662842 + RIREX_LTR 8828 0.0004 (1/2786) 0 * * Os_TE_283456 Chr5 8655378 8647421 + OSMU5 4881 0.7786 (1607/2064) 1 Intact * Os_TE_283452 Chr5 8654493 8647962 - ORSgTERT00100363 6446 0.8531 (1382/1620) 1 Intact * Os_TE_283439 Chr5 8645627 8645628 - COWARD 200 0.3277 (781/2383) 0 * * Os_TE_283438 Chr5 8644844 8643223 + MERMITE18C 1473 0.5322 (1481/2783) 1 Intact * Os_TE_283433 Chr5 8643186 8643187 - RIRE2_LTR 11306 0.0064 (19/2980) 0 * * Os_TE_283431 Chr5 8642786 8642785 + ORSgTERTOOT00067 6483 0.2236 (663/2965) 0 * * Os_TE_283406 Chr5 8627946 8627947 - TRUNCATOR2_LTR 2904 0.0025 (4/1632) 0 * Os_TE_283405 Os_TE_283405 Chr5 8627942 8627941 + ORSiTERTOOT00028 8600 0.0024 (4/1633) 0 * Os_TE_283406 Os_TE_283404 Chr5 8627652 8627653 - SZ-22_LTR 4403 0.0006 (1/1646) 0 * Os_TE_283403 Os_TE_283403 Chr5 8627648 8627647 + ORSiTERTOOT00226 792 0.0006 (1/1649) 0 * Os_TE_283404 Os_TE_283374 Chr5 8615494 8615495 + ORSgTETNOOT01219 231 0.0096 (28/2914) 0 * * Os_TE_283346 Chr5 8607030 8607031 - SC-3_LTR 5748 0.0003 (1/2982) 0 * * Os_TE_283320 Chr5 8595172 8595173 + ORSgTEMT02400014 229 0.2575 (768/2982) 0 * * Os_TE_283311 Chr5 8590946 8590945 - NDNA1TNA_OS 334 0.0070 (21/2988) 0 * * Os_TE_283295 Chr5 8580008 8580007 + RIREX_LTR 8828 0.0073 (19/2617) 0 * * Os_TE_283289 Chr5 8577960 8577959 - OSTE17 734 0.0219 (63/2881) 0 * * Os_TE_283272 Chr5 8572541 8572542 - OSLINE1-2 7128 0.0013 (4/2976) 0 * * Os_TE_283250 Chr5 8563660 8560053 - SZ-40LTR 2465 0.4648 (1387/2984) 1 Intact Os_TE_283248 Os_TE_283248 Chr5 8560053 8563660 + GYPSY-A_LTR 8951 0.4430 (1289/2910) 1 Solo_LTR Os_TE_283250 Os_TE_283187 Chr5 8541155 8541156 - RETROSAT3_LTR 11537 0.2148 (643/2993) 0 * * Os_TE_283184 Chr5 8541006 8541005 + RIRE2_LTR 11306 0.0003 (1/2990) 0 * * Os_TE_283183 Chr5 8540735 8540736 - COPIA2-LTR_OS 6433 0.0004 (1/2706) 0 * * Os_TE_283168 Chr5 8538026 8538027 + ENSPM4_OS 11610 0.0104 (31/2989) 0 * * Os_TE_283160 Chr5 8535339 8535243 - ORSiTEMT00200004 104 0.4499 (1328/2952) 1 Intact * Os_TE_283157 Chr5 8534711 8534712 + COPI2_LTR 4733 0.0017 (5/2993) 0 * * Os_TE_283156 Chr5 8534692 8534693 - COPIA2-LTR_OS 6433 0.0020 (6/2989) 0 * Os_TE_283155 Os_TE_283155 Chr5 8534688 8534687 + COPIA2-LTR_OS 6433 0.0017 (5/2985) 0 * Os_TE_283156 Os_TE_283153 Chr5 8533621 8533622 - RIRE7_LTR 7615 0.1130 (338/2990) 0 * Os_TE_283152 Os_TE_283152 Chr5 8533617 8533616 + RIRE7_LTR 7615 0.1132 (338/2987) 0 * Os_TE_283153 Os_TE_283148 Chr5 8530645 8530646 + COPI2_LTR 4733 0.0003 (1/2991) 0 * Os_TE_283147 Os_TE_283147 Chr5 8530641 8530640 - COPI2_LTR 4733 0.0003 (1/2993) 0 * Os_TE_283148 Os_TE_283146 Chr5 8530069 8530070 + SPMLIKE 10989 0.0920 (275/2989) 0 * Os_TE_283145 Os_TE_283145 Chr5 8530067 8530066 - ORSgTETN00200001 10994 0.0900 (269/2988) 0 * Os_TE_283146 Os_TE_283144 Chr5 8529801 8529802 - SZ-55_LTR 10318 0.0060 (18/2988) 0 * Os_TE_283143 Os_TE_283143 Chr5 8529797 8529796 + SZ-55_LTR 10318 0.0067 (20/2992) 0 * Os_TE_283144 Os_TE_283141 Chr5 8528023 8528024 + ORSiTERTOOT00333 4719 0.0003 (1/2971) 0 * Os_TE_283140 Os_TE_283140 Chr5 8528020 8528019 - ORSiTERTOOT00333 4719 0.0003 (1/2978) 0 * Os_TE_283141 Os_TE_283139 Chr5 8527466 8527467 + COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * * Os_TE_283137 Chr5 8527420 8527421 - RIRE2_LTR 11306 0.0003 (1/2990) 0 * * Os_TE_283133 Chr5 8527345 8527346 + COPI2_LTR 4733 0.0003 (1/2991) 0 * * Os_TE_283129 Chr5 8522990 8522991 - TRUNCATOR 2918 0.0958 (138/1440) 0 * * Os_TE_283128 Chr5 8522844 8522845 - RETRO2A_LTR 12895 0.0054 (6/1108) -1 * * Os_TE_283085 Chr5 8503512 8503511 + STOWAWAY51_OS 246 0.0105 (31/2964) 0 * Os_TE_283084 Os_TE_283084 Chr5 8503506 8503507 - STOWAWAY51_OS 246 0.0091 (27/2960) 0 * Os_TE_283085 Os_TE_283062 Chr5 8492162 8492163 - ORSgTETN00200001 10994 0.0730 (218/2985) 0 * Os_TE_283061 Os_TE_283061 Chr5 8492160 8492159 + SPMLIKE 10989 0.0768 (230/2994) 0 * Os_TE_283062 Os_TE_283052 Chr5 8488461 8488462 + SPMLIKE 10989 0.0870 (260/2989) 0 * Os_TE_283051 Os_TE_283051 Chr5 8488459 8488458 - ORSgTETN00200001 10994 0.0819 (244/2980) 0 * Os_TE_283052 Os_TE_283018 Chr5 8477257 8477258 - SC-3_LTR 5748 0.0003 (1/2995) 0 * Os_TE_283017 Os_TE_283017 Chr5 8477253 8477252 + ORSiTERTOOT00296 5553 0.0003 (1/2992) 0 * Os_TE_283018 Os_TE_283015 Chr5 8476786 8476785 - SC-3_LTR 5748 0.0020 (6/2996) 0 * * Os_TE_283013 Chr5 8476542 8476543 + MPING 430 0.0003 (1/2999) 0 * Os_TE_283012 Os_TE_283012 Chr5 8476540 8476539 - MPING 430 0.0003 (1/2998) 0 * Os_TE_283013 Os_TE_283010 Chr5 8475279 8475278 - OSTE33 1012 0.0014 (4/2942) 0 * * Os_TE_282962 Chr5 8460110 8460109 - ORSgTEMT01600639 228 0.0013 (4/2983) 0 * * Os_TE_282950 Chr5 8457696 8457695 - COPIA2-LTR_OS 6433 0.0974 (290/2978) 0 * * Os_TE_282946 Chr5 8456872 8456873 - MERMITED 1572 0.0013 (4/2975) 0 * Os_TE_282945 Os_TE_282945 Chr5 8456870 8456869 + MERMITED 1572 0.0013 (4/2975) 0 * Os_TE_282946 Os_TE_282944 Chr5 8455933 8455934 - MUDRN1_OS 764 0.0013 (4/2994) 0 * * Os_TE_282932 Chr5 8450415 8450416 - CASLET 354 0.0070 (21/2990) 0 * Os_TE_282931 Os_TE_282931 Chr5 8450413 8450412 + CASLET 354 0.0067 (20/2995) 0 * Os_TE_282932 Os_TE_282930 Chr5 8450382 8450381 - NDNA1TNA_OS 334 0.0013 (4/2984) 0 * Os_TE_282929 Os_TE_282929 Chr5 8450379 8450380 + ORSgTEMT00101121 331 0.0013 (4/2991) 0 * Os_TE_282930 Os_TE_282928 Chr5 8449714 8449713 + ORSgTEMT01601122 212 0.0014 (4/2955) 0 * * Os_TE_282922 Chr5 8449278 8449279 + ORSgTEMT00500201 140 0.0014 (4/2951) 0 * * Os_TE_282913 Chr5 8444152 8444153 - WANDERER 232 0.0013 (4/2996) 0 * * Os_TE_282892 Chr5 8434858 8434859 + CASTAWAY 364 0.0014 (4/2955) 0 * * Os_TE_282845 Chr5 8417343 8417344 - RETROSAT2LTR 12796 0.0208 (62/2975) 0 * * Os_TE_282827 Chr5 8411738 8411739 + ORSiTERTOOT00027 10853 0.0679 (200/2946) 0 * Os_TE_282826 Os_TE_282826 Chr5 8411734 8411733 - RIRE3A_LTR 10580 0.0708 (209/2952) 0 * Os_TE_282827 Os_TE_282818 Chr5 8407442 8404524 + TRUNCATOR 2918 0.8659 (2576/2975) 1 Intact Os_TE_282814 Os_TE_282814 Chr5 8404522 8407442 - TRUNCATOR 2918 0.8622 (2522/2925) 1 Intact Os_TE_282818 Os_TE_282810 Chr5 8402973 8402974 - TRUNCATOR2_LTR 2904 0.0840 (252/2999) 0 * Os_TE_282809 Os_TE_282809 Chr5 8402969 8402968 + TRUNCATOR2_LTR 2904 0.0817 (245/2999) 0 * Os_TE_282810 Os_TE_282802 Chr5 8401822 8401821 + RIRE2_LTR 11306 0.0003 (1/2968) 0 * * Os_TE_282801 Chr5 8401691 8401692 - RIREX_LTR 8828 0.0003 (1/2992) 0 * * Os_TE_282714 Chr5 8372899 8372900 - RETROSAT2LTRA 3112 0.0067 (20/2991) 0 * Os_TE_282713 Os_TE_282713 Chr5 8372895 8372894 + RETROSAT2LTRA 3112 0.0067 (20/2985) 0 * Os_TE_282714 Os_TE_282688 Chr5 8359096 8359097 + TRUNCATOR 2918 0.0007 (2/2868) 0 * * Os_TE_282678 Chr5 8357040 8357039 - COPIA2-LTR_OS 6433 0.0003 (1/2939) 0 * * Os_TE_282675 Chr5 8355554 8355555 - COPI2_LTR 4733 0.0688 (205/2979) 0 * * Os_TE_282664 Chr5 8346887 8346888 - COPI2_LTR 4733 0.0004 (1/2710) 0 * * Os_TE_282662 Chr5 8346576 8346577 + SPMLIKE 10989 0.0007 (2/2711) 0 * Os_TE_282661 Os_TE_282661 Chr5 8346574 8346573 - ORSgTETN00200001 10994 0.0007 (2/2710) 0 * Os_TE_282662 Os_TE_282612 Chr5 8323196 8323195 + RPO_OS 1983 0.0007 (2/2983) 0 * * Os_TE_282611 Chr5 8322905 8322906 - RIREX_LTR 8828 0.0003 (1/2986) 0 * Os_TE_282610 Os_TE_282610 Chr5 8322901 8322900 + RIREX_LTR 8828 0.0003 (1/2981) 0 * Os_TE_282611 Os_TE_282601 Chr5 8312589 8312590 + OSTE20 496 0.0742 (215/2899) 0 * Os_TE_282600 Os_TE_282600 Chr5 8312585 8312584 + OSTE20 496 0.0700 (202/2887) 0 * Os_TE_282601 Os_TE_282595 Chr5 8311740 8311741 + SPMLIKE 10989 0.0007 (2/2993) 0 * Os_TE_282594 Os_TE_282594 Chr5 8311738 8311737 - ORSgTETN00200001 10994 0.0007 (2/2998) 0 * Os_TE_282595 Os_TE_282568 Chr5 8296767 8296768 + ORSiTEMT01000008 242 0.0060 (18/2983) 0 * * Os_TE_282515 Chr5 8274819 8274820 - ORSiTERT00200155 15777 0.0003 (1/2983) 0 * * Os_TE_282480 Chr5 8260222 8260711 - OSTE20 496 0.3632 (941/2591) 1 Intact * Os_TE_282477 Chr5 8259890 8255965 + SZ-67LTR 1540 0.3977 (1125/2829) 1 Intact Os_TE_282474 Os_TE_282474 Chr5 8255965 8259890 - SZ-67LTR 1540 0.4349 (1290/2966) 1 Intact Os_TE_282477 Os_TE_282457 Chr5 8251444 8251443 - COPI2_LTR 4733 0.0049 (13/2677) 0 * * Os_TE_282456 Chr5 8251415 8251414 - TRUNCATOR 2918 0.0065 (19/2945) 0 * Os_TE_282455 Os_TE_282455 Chr5 8251414 8251415 + TRUNCATOR 2918 0.0064 (19/2975) 0 * Os_TE_282456 Os_TE_282352 Chr5 8187686 8187687 - ORSgTERT00201216 11284 0.0023 (7/2986) 0 * Os_TE_282351 Os_TE_282351 Chr5 8187682 8187681 - RIRE2_LTR 11306 0.0027 (8/2984) 0 * Os_TE_282352 Os_TE_282308 Chr5 8177241 8177242 - ORSgTEMT03600019 444 0.0057 (17/2985) 0 * * Os_TE_282303 Chr5 8171594 8171595 + INDITTO 263 0.0027 (8/2954) 0 * Os_TE_282302 Os_TE_282302 Chr5 8171592 8171591 - INDITTO 263 0.0017 (5/2955) 0 * Os_TE_282303 Os_TE_282301 Chr5 8171535 8159768 - ORSgTETN00200001 10994 0.4176 (1211/2900) 1 Intact Os_TE_282296 Os_TE_282296 Chr5 8159768 8171534 + SPMLIKE 10989 0.4569 (1363/2983) 1 Intact Os_TE_282301 Os_TE_282265 Chr5 8143885 8143884 + TRUNCATOR 2918 0.0058 (17/2936) 0 * Os_TE_282264 Os_TE_282264 Chr5 8143884 8143885 - TRUNCATOR 2918 0.0054 (16/2941) 0 * Os_TE_282265 Os_TE_282251 Chr5 8140345 8140346 + RIRE5-LTR_OS 6427 0.0989 (295/2984) 0 * Os_TE_282250 Os_TE_282250 Chr5 8140338 8140337 - RIRE5-LTR_OS 6427 0.0988 (295/2985) 0 * Os_TE_282251 Os_TE_282238 Chr5 8138181 8138182 + COPIA2-LTR_OS 6433 0.0045 (13/2902) 0 * Os_TE_282237 Os_TE_282237 Chr5 8138177 8138176 - COPIA2-LTR_OS 6433 0.0048 (14/2900) 0 * Os_TE_282238 Os_TE_282198 Chr5 8120729 8120728 + RETRO2_LTR 12874 0.0819 (244/2981) 0 * * Os_TE_282193 Chr5 8119576 8119577 + COPI2_LTR 4733 0.0067 (20/2987) 0 * Os_TE_282192 Os_TE_282192 Chr5 8119572 8119571 - COPI2_LTR 4733 0.0064 (19/2984) 0 * Os_TE_282193 Os_TE_282162 Chr5 8107026 8107025 - ORSgTEMT04600037 279 0.0004 (1/2857) 0 * * Os_TE_282113 Chr5 8078372 8078371 + TRUNCATOR 2918 0.0007 (2/2994) 0 * Os_TE_282112 Os_TE_282112 Chr5 8078371 8078372 - TRUNCATOR 2918 0.0007 (2/2996) 0 * Os_TE_282113 Os_TE_282094 Chr5 8059385 8059386 + ORSiTERTOOT00296 5553 0.0003 (1/2991) 0 * * Os_TE_282073 Chr5 8044519 8044518 - TRUNCATOR 2918 0.0168 (50/2979) 0 * * Os_TE_282050 Chr5 8037630 8037629 + TAMI2 254 0.0003 (1/2993) 0 * * Os_TE_282040 Chr5 8032948 8032949 - RIREX_LTR 8828 0.0847 (253/2987) 0 * Os_TE_282039 Os_TE_282039 Chr5 8032944 8032943 + RIREX_LTR 8828 0.0855 (255/2983) 0 * Os_TE_282040 Os_TE_281983 Chr5 8008903 8007935 + Cassandra_OS-LTR 764 0.3364 (910/2705) 1 Intact * Os_TE_281972 Chr5 8005587 8005586 + RIRE2_LTR 11306 0.0986 (282/2861) 0 * * Os_TE_281956 Chr5 8000225 8000226 - RIREX_LTR 8828 0.0007 (2/2995) 0 * Os_TE_281955 Os_TE_281955 Chr5 8000221 8000220 + RIREX_LTR 8828 0.0007 (2/2995) 0 * Os_TE_281956 Os_TE_281942 Chr5 7997829 7997614 - ORSgTEMT02400246 177 0.3085 (915/2966) 1 Intact Os_TE_281941 Os_TE_281941 Chr5 7997608 7997826 - TYPEM 227 0.3047 (910/2987) 1 Intact Os_TE_281942 Os_TE_281926 Chr5 7994877 7994878 + HARB-1_OS 5166 0.0017 (5/2987) 0 * * Os_TE_281916 Chr5 7993381 7993382 - GYPSY-A_LTR 8951 0.0003 (1/2969) 0 * Os_TE_281915 Os_TE_281915 Chr5 7993377 7993376 + SZ-40LTR 2465 0.0003 (1/2964) 0 * Os_TE_281916 Os_TE_281892 Chr5 7989660 7989661 + GYPSY-A_LTR 8951 0.0050 (15/2982) 0 * * Os_TE_281865 Chr5 7984244 7984243 + SZ-40LTR 2465 0.1052 (173/1645) -1 * * Os_TE_281862 Chr5 7983438 7983439 - RIREX_LTR 8828 0.0003 (1/2911) 0 * * Os_TE_281843 Chr5 7975576 7975577 + COPIA2-LTR_OS 6433 0.0004 (1/2783) 0 * Os_TE_281842 Os_TE_281842 Chr5 7975572 7975571 - COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_281843 Os_TE_281792 Chr5 7957907 7957906 + STOWAWAY44_OS 240 0.0155 (46/2966) 0 * Os_TE_281791 Os_TE_281791 Chr5 7957904 7957905 - STOWAWAY44_OS 240 0.0173 (51/2943) 0 * Os_TE_281792 Os_TE_281741 Chr5 7943639 7943638 + MPING 430 0.0004 (1/2679) 0 * * Os_TE_281686 Chr5 7914911 7914910 + OSMAR1 5265 0.0020 (6/2974) 0 * * Os_TE_281661 Chr5 7897501 7897500 + TRUNCATOR2_LTR 2904 0.0050 (15/2987) 0 * * Os_TE_281616 Chr5 7881049 7881050 + HATORY 3570 0.0104 (26/2501) 0 * * Os_TE_281582 Chr5 7865659 7865660 - ORSgTERT00201216 11284 0.0352 (105/2979) 0 * Os_TE_281581 Os_TE_281581 Chr5 7865655 7865654 - RIRE2_LTR 11306 0.0353 (105/2977) 0 * Os_TE_281582 Os_TE_281579 Chr5 7863520 7863519 - RIREX_LTR 8828 0.0003 (1/2991) 0 * * Os_TE_281578 Chr5 7863194 7863193 - RIREX_LTR 8828 0.0057 (17/2991) 0 * Os_TE_281577 Os_TE_281577 Chr5 7863184 7863185 + RIREX_LTR 8828 0.0057 (17/2988) 0 * Os_TE_281578 Os_TE_281570 Chr5 7859942 7859941 + TELIA 141 0.0007 (2/2970) 0 * * Os_TE_281501 Chr5 7831650 7831651 + TWIF 586 0.0070 (21/2983) 0 * * Os_TE_281481 Chr5 7825876 7825877 + SPMLIKE 10989 0.0178 (53/2974) 0 * Os_TE_281480 Os_TE_281480 Chr5 7825874 7825873 - ORSgTETN00200001 10994 0.0179 (53/2968) 0 * Os_TE_281481 Os_TE_281461 Chr5 7822124 7822123 + ORSgTEMT00900453 262 0.0003 (1/2940) 0 * * Os_TE_281458 Chr5 7820623 7820624 + SEVERIN-2 1952 0.0039 (11/2791) 0 * * Os_TE_281445 Chr5 7819741 7819742 - HARB-1_OS 5166 0.0004 (1/2820) 0 * Os_TE_281444 Os_TE_281444 Chr5 7819739 7819738 + HARB-1_OS 5166 0.0003 (1/2952) 0 * Os_TE_281445 Os_TE_281443 Chr5 7819707 7819387 + ORSgTEMT00100531 325 0.3400 (1006/2959) 1 Intact Os_TE_281439 Os_TE_281439 Chr5 7819377 7819703 + ORSgTEMT00101121 331 0.3422 (1015/2966) 1 Intact Os_TE_281443 Os_TE_281433 Chr5 7818923 7819268 + NDNA2TNA_OS 346 0.3451 (1025/2970) 1 Intact * Os_TE_281432 Chr5 7818651 7818650 - STOWAWAY51_OS 246 0.0003 (1/2958) 0 * Os_TE_281431 Os_TE_281431 Chr5 7818645 7818646 + STOWAWAY51_OS 246 0.0003 (1/2936) 0 * Os_TE_281432 Os_TE_281413 Chr5 7810668 7810669 + COPIA2-LTR_OS 6433 0.0010 (3/2984) 0 * Os_TE_281412 Os_TE_281412 Chr5 7810664 7810663 - COPIA2-LTR_OS 6433 0.0010 (3/2984) 0 * Os_TE_281413 Os_TE_281394 Chr5 7802518 7802519 + SPMLIKE 10989 0.0017 (5/2998) 0 * Os_TE_281393 Os_TE_281393 Chr5 7802516 7802515 - ORSgTETN00200001 10994 0.0017 (5/2997) 0 * Os_TE_281394 Os_TE_281392 Chr5 7801766 7801765 - TRUNCATOR 2918 0.0028 (8/2898) 0 * Os_TE_281391 Os_TE_281391 Chr5 7801765 7801766 + TRUNCATOR 2918 0.0031 (9/2908) 0 * Os_TE_281392 Os_TE_281386 Chr5 7801232 7801233 + RETROSAT4_LTR 13504 0.6227 (1852/2974) 0 * Os_TE_281385 Os_TE_281385 Chr5 7801228 7801227 - RETROSAT4_LTR 13504 0.6253 (1862/2978) 0 * Os_TE_281386 Os_TE_281383 Chr5 7801124 7801123 + CRM-LTR_OS 7749 0.0003 (1/2944) 0 * * Os_TE_281368 Chr5 7786416 7786415 + ORSiTERTOOT00226 792 0.0007 (2/2723) 0 * * Os_TE_281348 Chr5 7778707 7778708 + COPI2_LTR 4733 0.0003 (1/2970) 0 * Os_TE_281347 Os_TE_281347 Chr5 7778703 7778702 - COPI2_LTR 4733 0.0003 (1/2965) 0 * Os_TE_281348 Os_TE_281334 Chr5 7775594 7775595 - COPIA2-LTR_OS 6433 0.0003 (1/2948) 0 * * Os_TE_281333 Chr5 7775497 7775498 + COPI2_LTR 4733 0.0003 (1/2901) 0 * Os_TE_281332 Os_TE_281332 Chr5 7775493 7775492 - COPI2_LTR 4733 0.0003 (1/2889) 0 * Os_TE_281333 Os_TE_281316 Chr5 7772682 7772683 + SPMLIKE 10989 0.0034 (10/2920) 0 * Os_TE_281315 Os_TE_281315 Chr5 7772680 7772679 - ORSgTETN00200001 10994 0.0032 (9/2850) 0 * Os_TE_281316 Os_TE_281291 Chr5 7766361 7766362 - ORSiTEMT01300001 950 0.0089 (26/2910) 0 * Os_TE_281290 Os_TE_281290 Chr5 7766356 7766355 + KRISPIE 956 0.0093 (27/2891) 0 * Os_TE_281291 Os_TE_281288 Chr5 7761415 7761416 + SETARIA2 1142 0.5259 (1553/2953) 0 * Os_TE_281287 Os_TE_281287 Chr5 7761413 7761412 + SETARIA2 1142 0.5340 (1588/2974) 0 * Os_TE_281288 Os_TE_281283 Chr5 7759649 7759650 - ORSgTETN00200001 10994 0.0176 (52/2948) 0 * Os_TE_281282 Os_TE_281282 Chr5 7759647 7759646 + SPMLIKE 10989 0.0186 (55/2951) 0 * Os_TE_281283 Os_TE_281262 Chr5 7754170 7754171 - COPIA2-LTR_OS 6433 0.0003 (1/2937) 0 * Os_TE_281261 Os_TE_281261 Chr5 7754166 7754165 + COPIA2-LTR_OS 6433 0.0003 (1/2970) 0 * Os_TE_281262 Os_TE_281211 Chr5 7732283 7732282 + TRUNCATOR 2918 0.0057 (17/2993) 0 * * Os_TE_281191 Chr5 7724493 7724492 + SPMLIKE 10989 0.0176 (49/2785) 0 * * Os_TE_281159 Chr5 7710888 7710889 + OSTE20 496 0.0060 (17/2826) 0 * Os_TE_281158 Os_TE_281158 Chr5 7710884 7710883 + OSTE20 496 0.0194 (55/2838) 0 * Os_TE_281159 Os_TE_281151 Chr5 7707305 7707306 - COPIA2-LTR_OS 6433 0.0207 (62/2996) 0 * Os_TE_281150 Os_TE_281150 Chr5 7707301 7707300 + COPIA2-LTR_OS 6433 0.0197 (59/2993) 0 * Os_TE_281151 Os_TE_281147 Chr5 7705140 7705139 - TRUNCATOR 2918 0.0118 (35/2963) 0 * Os_TE_281146 Os_TE_281146 Chr5 7705139 7705140 + TRUNCATOR 2918 0.0201 (60/2981) 0 * Os_TE_281147 Os_TE_281068 Chr5 7671906 7671907 + COPI2_LTR 4733 0.0003 (1/2993) 0 * Os_TE_281067 Os_TE_281067 Chr5 7671902 7671901 - COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_281068 Os_TE_281049 Chr5 7658156 7658157 + GYPSY-A_LTR 8951 0.0003 (1/2977) 0 * Os_TE_281048 Os_TE_281048 Chr5 7658152 7658151 - SZ-40LTR 2465 0.0007 (2/2975) 0 * Os_TE_281049 Os_TE_281032 Chr5 7648425 7648426 - RIREX_LTR 8828 0.0007 (2/2973) 0 * Os_TE_281031 Os_TE_281031 Chr5 7648421 7648420 + RIREX_LTR 8828 0.0007 (2/2950) 0 * Os_TE_281032 Os_TE_281021 Chr5 7630182 7630183 + ORSgTEMT00700017 386 0.0020 (6/2995) 0 * * Os_TE_280960 Chr5 7591460 7591461 - TRUNCATOR2_LTR 2904 0.0006 (1/1627) 0 * * Os_TE_280957 Chr5 7591257 7591258 - TRUNCATOR2_LTR 2904 0.0006 (1/1638) 0 * Os_TE_280956 Os_TE_280956 Chr5 7591253 7591252 + ORSiCMCM00100019 2717 0.0006 (1/1647) 0 * Os_TE_280957 Os_TE_280931 Chr5 7582441 7582442 - TRUNCATOR2_LTR 2904 0.0056 (9/1609) 0 * Os_TE_280930 Os_TE_280930 Chr5 7582437 7582436 + ORSiCMCM00100019 2717 0.0050 (8/1605) 0 * Os_TE_280931 Os_TE_280901 Chr5 7569617 7569618 - RIRE2_LTR 11306 0.0735 (118/1606) 0 * * Os_TE_280899 Chr5 7566086 7566087 + AMYLTP 383 0.0006 (1/1629) 0 * * Os_TE_280897 Chr5 7566063 7566062 - INDITTO 263 0.0031 (5/1632) 0 * * Os_TE_280872 Chr5 7561322 7561323 + ORSiTERT00200076 3543 0.0004 (1/2424) 0 * * Os_TE_280864 Chr5 7557284 7556939 + NDNA2TNA_OS 346 0.4734 (1413/2985) 1 Intact Os_TE_280859 Os_TE_280859 Chr5 7556938 7557284 - NDNA2TNA_OS 346 0.4668 (1376/2948) 1 Intact Os_TE_280864 Os_TE_280854 Chr5 7555711 7555712 + NDNA1TNA_OS 334 0.0070 (21/2982) 0 * Os_TE_280853 Os_TE_280853 Chr5 7555709 7555708 - NDNA1TNA_OS 334 0.0071 (21/2965) 0 * Os_TE_280854 Os_TE_280829 Chr5 7550279 7539277 - RETROSAT3_LTR 11537 0.4733 (1417/2994) 1 Intact Os_TE_280816 Os_TE_280816 Chr5 7539277 7542414 + RETROSAT2LTRA 3112 0.5043 (1422/2820) 1 Intact Os_TE_280829 Os_TE_280812 Chr5 7537749 7537748 + Cassandra_OS-LTR 764 0.0003 (1/2998) 0 * * Os_TE_280801 Chr5 7534810 7534811 - RETRO2_LTR 12874 0.0004 (1/2541) 0 * * Os_TE_280764 Chr5 7523052 7523053 + RETRO1_LTR 8314 0.0033 (10/2997) 0 * * Os_TE_280752 Chr5 7518096 7518097 - RIREX_LTR 8828 0.4069 (1215/2986) 0 * Os_TE_280751 Os_TE_280751 Chr5 7518092 7518091 + RIREX_LTR 8828 0.4153 (1197/2882) 0 * Os_TE_280752 Os_TE_280748 Chr5 7517566 7517567 + TWIF 586 0.0007 (2/2956) 0 * Os_TE_280747 Os_TE_280747 Chr5 7517559 7517558 - ORSiTETNOOT00156 3648 0.0044 (13/2961) 0 * Os_TE_280748 Os_TE_280729 Chr5 7515243 7515244 - RIREX_LTR 8828 0.0003 (1/2982) 0 * Os_TE_280728 Os_TE_280728 Chr5 7515239 7515238 + RIREX_LTR 8828 0.0003 (1/2979) 0 * Os_TE_280729 Os_TE_280722 Chr5 7511630 7511631 - OSTE17 734 0.0003 (1/2993) 0 * Os_TE_280721 Os_TE_280721 Chr5 7511626 7511625 - OSTE17 734 0.0003 (1/2994) 0 * Os_TE_280722 Os_TE_280698 Chr5 7504925 7504924 - RIRE3_LTR 12054 0.0042 (8/1900) 0 * * Os_TE_280657 Chr5 7485118 7485117 - MuDR3_OS 8604 0.0083 (24/2901) 0 * * Os_TE_280641 Chr5 7480451 7480452 - MuDR3_OS 8604 0.0437 (112/2561) 0 * Os_TE_280640 Os_TE_280640 Chr5 7480442 7480441 - MuDR3_OS 8604 0.0375 (96/2557) 0 * Os_TE_280641 Os_TE_280636 Chr5 7478320 7478319 - SZ-22_LTR 4403 0.0007 (2/2959) 0 * * Os_TE_280560 Chr5 7431251 7430460 + ORSiTERTOOT00034 791 0.1522 (252/1656) 1 Intact Os_TE_280557 Os_TE_280557 Chr5 7426839 7431251 - SZ-22_LTR 4403 0.1771 (251/1417) 1 Intact Os_TE_280560 Os_TE_280546 Chr5 7421690 7421689 - OSTE18 129 0.0014 (4/2950) 0 * Os_TE_280545 Os_TE_280545 Chr5 7421686 7421687 + OSTE18 129 0.0017 (5/2973) 0 * Os_TE_280546 Os_TE_280525 Chr5 7415202 7415203 + COPI2_LTR 4733 0.0024 (7/2972) 0 * Os_TE_280524 Os_TE_280524 Chr5 7415198 7415197 - COPI2_LTR 4733 0.0027 (8/2968) 0 * Os_TE_280525 Os_TE_280503 Chr5 7407850 7407851 - ORSgTETN00200001 10994 0.3818 (1039/2721) 0 * * Os_TE_280487 Chr5 7394309 7394079 + STOWAWAY51_OS 246 0.4663 (1358/2912) 1 Intact Os_TE_280486 Os_TE_280486 Chr5 7394080 7394306 + ORSgTEMT01601591 242 0.4728 (1393/2946) 1 Intact Os_TE_280487 Os_TE_280428 Chr5 7378089 7378090 - TRUNCATOR2_LTR 2904 0.0003 (1/2877) 0 * * Os_TE_280407 Chr5 7369713 7369714 - SC-8_LTR 4951 0.0010 (3/2963) 0 * Os_TE_280406 Os_TE_280406 Chr5 7369709 7369708 + SC-8_LTR 4951 0.0010 (3/2966) 0 * Os_TE_280407 Os_TE_280358 Chr5 7360234 7360235 + HARB-1_OS 5166 0.0003 (1/2967) 0 * Os_TE_280357 Os_TE_280357 Chr5 7360232 7360231 - HARB-1_OS 5166 0.0003 (1/2961) 0 * Os_TE_280358 Os_TE_280312 Chr5 7344397 7344398 + INDITTO 263 0.0023 (7/2989) 0 * Os_TE_280311 Os_TE_280311 Chr5 7344395 7344394 - INDITTO 263 0.0023 (7/2990) 0 * Os_TE_280312 Os_TE_280266 Chr5 7330211 7330210 + ORSiTERTOOT00381 4988 0.0007 (2/2994) 0 * * Os_TE_280265 Chr5 7326854 7326855 - SZ-55_LTR 10318 0.0003 (1/2995) 0 * Os_TE_280264 Os_TE_280264 Chr5 7326850 7326849 + SZ-55_LTR 10318 0.0003 (1/2995) 0 * Os_TE_280265 Os_TE_280261 Chr5 7324244 7324243 - SZ-55_LTR 10318 0.0007 (2/2993) 0 * * Os_TE_280259 Chr5 7323693 7323694 + TRUNCATOR 2918 0.0057 (17/2989) 0 * * Os_TE_280227 Chr5 7304831 7304832 - BAJIELTR 4500 0.0017 (5/2997) 0 * * Os_TE_280193 Chr5 7295907 7295906 + OSTE33 1012 0.7549 (1155/1530) 0 * * Os_TE_280190 Chr5 7292109 7292110 - RETRO2_LTR 12874 0.4435 (1320/2976) 0 * Os_TE_280189 Os_TE_280189 Chr5 7292105 7292104 + RETRO2_LTR 12874 0.4477 (1335/2982) 0 * Os_TE_280190 Os_TE_280171 Chr5 7278984 7278985 - EnSpm-13_OS 11171 0.0003 (1/2988) 0 * Os_TE_280170 Os_TE_280170 Chr5 7278982 7278981 + EnSpm-13_OS 11171 0.0003 (1/2991) 0 * Os_TE_280171 Os_TE_280139 Chr5 7272647 7272648 + COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_280138 Os_TE_280138 Chr5 7272643 7272642 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_280139 Os_TE_280090 Chr5 7238844 7238843 - INDITTO 263 0.0003 (1/2994) 0 * * Os_TE_280071 Chr5 7233101 7233102 - RIRE3_LTR 12054 0.0007 (2/2990) 0 * * Os_TE_280023 Chr5 7223987 7223988 - COPI2_LTR 4733 0.3178 (919/2892) 0 * * Os_TE_279990 Chr5 7207067 7207068 - COPIA2-LTR_OS 6433 0.0003 (1/2984) 0 * * Os_TE_279988 Chr5 7206982 7206983 + RIRE2_LTR 11306 0.3441 (1029/2990) 0 * * Os_TE_279962 Chr5 7200187 7200186 + ORSiTERTOOT00028 8600 0.3532 (1043/2953) 0 * * Os_TE_279927 Chr5 7182462 7187689 + SZ-62LTR 3649 0.5740 (1703/2967) 1 Intact * Os_TE_279914 Chr5 7173017 7173016 - ORSgTEMT00101341 314 0.0064 (19/2968) 0 * * Os_TE_279875 Chr5 7156917 7156918 - SPMLIKE 10989 0.0003 (1/2988) 0 * Os_TE_279874 Os_TE_279874 Chr5 7156915 7156914 + SPMLIKE 10989 0.0003 (1/2988) 0 * Os_TE_279875 Os_TE_279862 Chr5 7155374 7155373 + TWIFBIG 3567 0.0003 (1/2952) 0 * Os_TE_279861 Os_TE_279861 Chr5 7155316 7155317 + SPMLIKE 10989 0.0003 (1/2946) 0 * Os_TE_279862 Os_TE_279858 Chr5 7153716 7153717 + RETRO2A_LTR 12895 0.4560 (1363/2989) 0 * Os_TE_279857 Os_TE_279857 Chr5 7153712 7153711 - RETRO1_LTR 8314 0.4540 (1358/2991) 0 * Os_TE_279858 Os_TE_279789 Chr5 7130190 7130191 + OSTONOR1_LTR 6440 0.4577 (1365/2982) 0 * Os_TE_279788 Os_TE_279788 Chr5 7130186 7130185 - OSTONOR1_LTR 6440 0.4506 (1340/2974) 0 * Os_TE_279789 Os_TE_279787 Chr5 7130104 7130105 - SZ-62LTR 3649 0.0339 (101/2982) 0 * Os_TE_279786 Os_TE_279786 Chr5 7130100 7130099 + SZ-62LTR 3649 0.0319 (95/2978) 0 * Os_TE_279787 Os_TE_279755 Chr5 7114713 7114353 + ORSgTEMT00600272 361 0.1305 (390/2989) 1 Intact Os_TE_279754 Os_TE_279754 Chr5 7114350 7114713 - ORSgTEMT00600524 364 0.1312 (391/2981) 1 Intact Os_TE_279755 Os_TE_279730 Chr5 7088894 7088893 - ORSgTEMT02400246 177 0.0003 (1/2969) 0 * Os_TE_279729 Os_TE_279729 Chr5 7088893 7088894 - TYPEM 227 0.0003 (1/2952) 0 * Os_TE_279730 Os_TE_279721 Chr5 7085083 7085084 + OSR3_LTR 5201 0.0007 (2/2987) 0 * Os_TE_279720 Os_TE_279720 Chr5 7085079 7085078 - OSR3_LTR 5201 0.0007 (2/2984) 0 * Os_TE_279721 Os_TE_279718 Chr5 7081862 7081863 - RIREX_LTR 8828 0.0047 (14/2984) 0 * Os_TE_279717 Os_TE_279717 Chr5 7081858 7081857 + RIREX_LTR 8828 0.0050 (15/2985) 0 * Os_TE_279718 Os_TE_279716 Chr5 7081035 7081036 + ORSiTERTOOT00296 5553 0.0003 (1/2990) 0 * Os_TE_279715 Os_TE_279715 Chr5 7081031 7081030 - SC-3_LTR 5748 0.0003 (1/2991) 0 * Os_TE_279716 Os_TE_279677 Chr5 7070235 7070236 - RIREX_LTR 8828 0.0007 (2/2920) 0 * * Os_TE_279647 Chr5 7066316 7066315 + ORSgTEMT00901202 248 0.0003 (1/2975) 0 * * Os_TE_279641 Chr5 7061831 7061983 - ORSiTERT00400003 330 0.5279 (1551/2938) 1 Intact * Os_TE_279637 Chr5 7061289 7061290 + COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_279636 Os_TE_279636 Chr5 7061285 7061284 - COPIA2-LTR_OS 6433 0.0005 (1/2119) 0 * Os_TE_279637 Os_TE_279592 Chr5 7040680 7040681 + ORSgTETNOOT00032 218 0.0064 (19/2984) 0 * * Os_TE_279590 Chr5 7039965 7039966 + RETROSAT3_LTR 11537 0.0020 (6/2948) 0 * Os_TE_279589 Os_TE_279589 Chr5 7039961 7039960 - RETROSAT3_LTR 11537 0.0024 (7/2945) 0 * Os_TE_279590 Os_TE_279575 Chr5 7032323 7032324 + MPING 430 0.0003 (1/2978) 0 * Os_TE_279574 Os_TE_279574 Chr5 7032321 7032320 - MPING 430 0.0003 (1/2974) 0 * Os_TE_279575 Os_TE_279573 Chr5 7032223 7032224 + F770 284 0.0067 (20/2974) 0 * * Os_TE_279572 Chr5 7031934 7031933 - MUDRN1_OS 764 0.0007 (2/2987) 0 * * Os_TE_279571 Chr5 7031887 7031888 - MERMITEJ 1498 0.0003 (1/2980) 0 * * Os_TE_279570 Chr5 7031464 7031465 + ORSgTEMT00300069 394 0.0003 (1/2865) 0 * * Os_TE_279559 Chr5 7029019 7029018 + MPING 430 0.0007 (2/2889) 0 * * Os_TE_279558 Chr5 7028790 7029006 - ORSgTEMT01600662 238 0.7276 (2156/2963) 1 Intact * Os_TE_279468 Chr5 7012784 7012783 - COPI2_LTR 4733 0.0003 (1/2969) 0 * * Os_TE_279459 Chr5 7009506 7009505 - COPI2_LTR 4733 0.0014 (4/2962) 0 * * Os_TE_279438 Chr5 7002458 7002459 - COPI2_LTR 4733 0.0292 (86/2950) 0 * * Os_TE_279435 Chr5 7002257 7002258 - ORSgTERTOOT00094 240 0.0030 (9/2985) 0 * * Os_TE_279433 Chr5 7001520 7001519 + STOWAWAY45_OS 266 0.0010 (3/2992) 0 * * Os_TE_279408 Chr5 6993262 6993263 + Mudr5_OS 5952 0.0017 (5/2977) 0 * * Os_TE_279353 Chr5 6955001 6955002 - JOUZHEN 596 0.0962 (288/2993) 0 * Os_TE_279352 Os_TE_279352 Chr5 6954994 6954993 + JOUZHEN 596 0.0979 (293/2994) 0 * Os_TE_279353 Os_TE_279313 Chr5 6944858 6944859 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_279312 Os_TE_279312 Chr5 6944854 6944853 - COPIA2-LTR_OS 6433 0.0003 (1/2966) 0 * Os_TE_279313 Os_TE_279298 Chr5 6936683 6936682 + ORSgTETNOOT00670 249 0.6050 (1772/2929) 0 * * Os_TE_279292 Chr5 6929781 6929780 - TRUNCATOR 2918 0.0008 (1/1235) 0 * * Os_TE_279284 Chr5 6926410 6925629 + JINHUA 479 0.8193 (1093/1334) 1 Intact * Os_TE_279278 Chr5 6921469 6924089 - MERMITEB 1610 0.4249 (1223/2878) 1 Intact * Os_TE_279275 Chr5 6920836 6920835 + ORSgTEMT01601983 238 0.5932 (1651/2783) 0 * * Os_TE_279269 Chr5 6917291 6915867 - MERMITED 1572 0.6972 (1234/1770) 0.85 Intact * Os_TE_279259 Chr5 6913937 6913938 + CLOUD-3 550 0.0005 (1/2154) 0 * * Os_TE_279247 Chr5 6909624 6909623 - COPIA1-LTR_OS 9292 0.6116 (1798/2940) 0 * * Os_TE_279232 Chr5 6904892 6908203 - RETROSAT5_LTR 13878 0.4083 (1209/2961) 1 Solo_LTR * Os_TE_279231 Chr5 6904693 6904694 + RIREX_LTR 8828 0.0003 (1/2992) 0 * * Os_TE_279227 Chr5 6904019 6904018 + RIREX_LTR 8828 0.0032 (4/1254) 0 * * Os_TE_279200 Chr5 6891813 6892038 + STOWAWAY43_OS 233 0.7330 (1194/1629) 1 Intact * Os_TE_279198 Chr5 6891265 6891168 + ORSgTEMT01701663 106 0.4174 (1217/2916) 1 Intact Os_TE_279197 Os_TE_279197 Chr5 6891168 6891265 + ORSgTEMT01700632 122 0.4782 (1237/2587) 1 Intact Os_TE_279198 Os_TE_279196 Chr5 6891073 6890833 - ORSgTETNOOT02565 240 0.4356 (1230/2824) 1 Intact * Os_TE_279180 Chr5 6885730 6885729 + ORSgTEMT01602188 240 0.0010 (3/2961) 0 * * Os_TE_279179 Chr5 6885714 6885713 - ORSgTEMT01602467 227 0.6012 (1759/2926) 0 * * Os_TE_279176 Chr5 6885304 6885305 + SEVERIN-2 1952 0.5800 (1602/2762) 0 * * Os_TE_279175 Chr5 6884684 6884685 + TRUNCATOR 2918 0.0003 (1/2979) 0 * * Os_TE_279157 Chr5 6880453 6880301 + ORSgTEMT00500610 153 0.4086 (1207/2954) 1 Intact Os_TE_279156 Os_TE_279156 Chr5 6880301 6880449 - ORSgTEMT00500512 153 0.4096 (1207/2947) 1 Intact Os_TE_279157 Os_TE_279145 Chr5 6875925 6875926 - BAJIELTR 4500 0.1751 (255/1456) 0 * Os_TE_279144 Os_TE_279144 Chr5 6875921 6875920 + BAJIELTR 4500 0.6140 (1826/2974) 0 * Os_TE_279145 Os_TE_279128 Chr5 6872308 6874613 - CACTA-Q 2268 0.3947 (1128/2858) 1 Intact * Os_TE_279124 Chr5 6871451 6871214 - ORSgTEMT01600639 228 0.3705 (981/2648) 1 Intact * Os_TE_279111 Chr5 6863574 6863575 - COPI1_LTR 4721 0.6107 (1826/2990) 0 * Os_TE_279110 Os_TE_279110 Chr5 6863570 6863569 + COPI1_LTR 4721 0.6125 (1835/2996) 0 * Os_TE_279111 Os_TE_279109 Chr5 6863205 6863204 + AMYLTP 383 0.3918 (1170/2986) 0 * Os_TE_279107 Os_TE_279107 Chr5 6863161 6863162 - AMYLTP 383 0.3926 (1173/2988) 0 * Os_TE_279109 Os_TE_279089 Chr5 6853263 6853264 + MERMITEH 1307 0.6045 (1761/2913) 0 * * Os_TE_279086 Chr5 6849642 6849643 - SC-3_LTR 5748 0.0003 (1/2982) 0 * Os_TE_279085 Os_TE_279085 Chr5 6849638 6849637 + ORSiTERTOOT00296 5553 0.0003 (1/2986) 0 * Os_TE_279086 Os_TE_279081 Chr5 6846049 6845908 - TELIA 141 0.4026 (1198/2976) 1 Intact Os_TE_279080 Os_TE_279080 Chr5 6845908 6846049 + TELIA 141 0.3999 (1189/2973) 1 Intact Os_TE_279081 Os_TE_279073 Chr5 6841979 6841980 + STOWAWAY46_OS 154 0.6079 (1778/2925) 0 * * Os_TE_279072 Chr5 6841730 6841476 - ORSgTETNOOT00754 253 0.3966 (1176/2965) 1 Intact Os_TE_279071 Os_TE_279071 Chr5 6841476 6841730 + ORSgTETNOOT01998 254 0.4035 (1204/2984) 1 Intact Os_TE_279072 Os_TE_279069 Chr5 6841105 6840848 - ORSgTEMT00901138 254 0.4036 (1203/2981) 1 Intact Os_TE_279066 Os_TE_279066 Chr5 6840846 6841093 - ORSgTEMT00901269 237 0.4055 (1206/2974) 1 Intact Os_TE_279069 Os_TE_279058 Chr5 6835767 6835768 - RETRO1_LTR 8314 0.0003 (1/2984) 0 * * Os_TE_279034 Chr5 6828177 6828178 - GAIJIN 147 0.0021 (6/2888) 0 * * Os_TE_278977 Chr5 6799934 6799933 + CACTA-M 1129 0.0003 (1/2987) 0 * * Os_TE_278965 Chr5 6792477 6792478 - RETROSAT2LTR 12796 0.0543 (160/2946) 0 * * Os_TE_278956 Chr5 6789345 6789346 + ORSgTEMT01702013 148 0.0013 (4/2975) 0 * * Os_TE_278953 Chr5 6787459 6787460 - OLO24 345 0.0017 (5/2989) 0 * Os_TE_278952 Os_TE_278952 Chr5 6787457 6787456 + OLO24 345 0.0017 (5/2987) 0 * Os_TE_278953 Os_TE_278925 Chr5 6777644 6777643 - STOWAWAY51_OS 246 0.0007 (2/2998) 0 * Os_TE_278924 Os_TE_278924 Chr5 6777641 6777642 - STOWAWAY51_OS 246 0.0007 (2/2997) 0 * Os_TE_278925 Os_TE_278912 Chr5 6773117 6770135 - TRUNCATOR 2918 0.4030 (1200/2978) 1 Intact Os_TE_278909 Os_TE_278909 Chr5 6770135 6773112 + TRUNCATOR 2918 0.4034 (1199/2972) 1 Intact Os_TE_278912 Os_TE_278908 Chr5 6770044 6770043 + ORSgTEMT02000030 197 0.6089 (1800/2956) 0 * * Os_TE_278905 Chr5 6765087 6764597 - OSTE20 496 0.3915 (1146/2927) 1 Intact Os_TE_278904 Os_TE_278904 Chr5 6764597 6765080 + OSTE20 496 0.3920 (1152/2939) 1 Intact Os_TE_278905 Os_TE_278890 Chr5 6759904 6759905 + COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_278889 Os_TE_278889 Chr5 6759900 6759899 - COPI2_LTR 4733 0.0007 (2/2996) 0 * Os_TE_278890 Os_TE_278886 Chr5 6758813 6758812 - TRUNCATOR 2918 0.0482 (132/2738) 0 * * Os_TE_278871 Chr5 6755242 6755241 + TYPEH 309 0.0007 (2/2977) 0 * * Os_TE_278858 Chr5 6747915 6747916 + SINE1R5_OS 121 0.5310 (1585/2985) 0 * * Os_TE_278857 Chr5 6747838 6747839 + ORSiTERTOOT00226 792 0.0003 (1/2983) 0 * Os_TE_278856 Os_TE_278856 Chr5 6747834 6747833 - SZ-22_LTR 4403 0.0003 (1/2987) 0 * Os_TE_278857 Os_TE_278843 Chr5 6744368 6744367 + OSTE33 1012 0.0003 (1/2865) 0 * * Os_TE_278842 Chr5 6743977 6743978 + MPING 430 0.0004 (1/2560) 0 * Os_TE_278841 Os_TE_278841 Chr5 6743975 6743974 - MPING 430 0.0004 (1/2575) 0 * Os_TE_278842 Os_TE_278839 Chr5 6743803 6743804 + MPING 430 0.0004 (1/2672) 0 * Os_TE_278838 Os_TE_278838 Chr5 6743801 6743800 - MPING 430 0.0004 (1/2612) 0 * Os_TE_278839 Os_TE_278826 Chr5 6741524 6741525 - ORSiTERTOOT00201 3268 0.0003 (1/2942) 0 * * Os_TE_278803 Chr5 6729697 6733894 + ORSgTETNOOT01834 251 0.4272 (1270/2973) 1 Intact * Os_TE_278790 Chr5 6725827 6725826 + TWIFB1 3737 0.0003 (1/2983) 0 * * Os_TE_278786 Chr5 6723967 6723968 + RIREX_LTR 8828 0.0007 (2/2970) 0 * Os_TE_278785 Os_TE_278785 Chr5 6723963 6723962 - RIREX_LTR 8828 0.0007 (2/2970) 0 * Os_TE_278786 Os_TE_278749 Chr5 6710745 6710746 + COPI2_LTR 4733 0.0206 (60/2913) 0 * Os_TE_278748 Os_TE_278748 Chr5 6710741 6710740 - COPI2_LTR 4733 0.0179 (52/2906) 0 * Os_TE_278749 Os_TE_278716 Chr5 6689550 6689551 - SC-3_LTR 5748 0.0141 (42/2983) 0 * Os_TE_278715 Os_TE_278715 Chr5 6689546 6689545 + ORSiTERTOOT00296 5553 0.0137 (41/2985) 0 * Os_TE_278716 Os_TE_278688 Chr5 6682085 6681684 - ORSgTEMT01800105 452 0.4770 (1408/2952) 1 Intact Os_TE_278687 Os_TE_278687 Chr5 6681689 6682080 - ORSgTEMT04200023 393 0.4766 (1406/2950) 1 Intact Os_TE_278688 Os_TE_278645 Chr5 6666530 6666529 - STOWAWAY44_OS 240 0.0030 (9/2983) 0 * Os_TE_278644 Os_TE_278644 Chr5 6666527 6666528 - STOWAWAY51_OS 246 0.0030 (9/2983) 0 * Os_TE_278645 Os_TE_278622 Chr5 6658199 6658200 + RIREX_LTR 8828 0.0003 (1/2994) 0 * Os_TE_278621 Os_TE_278621 Chr5 6658195 6658194 - RIREX_LTR 8828 0.0003 (1/2994) 0 * Os_TE_278622 Os_TE_278619 Chr5 6657402 6657403 + ORSgTETNOOT01834 251 0.0003 (1/2971) 0 * Os_TE_278618 Os_TE_278618 Chr5 6657400 6657399 + ORSgTETNOOT01834 251 0.0007 (2/2977) 0 * Os_TE_278619 Os_TE_278617 Chr5 6657360 6657361 + INDITTO 263 0.0158 (47/2978) 0 * Os_TE_278616 Os_TE_278616 Chr5 6657358 6657357 - INDITTO 263 0.0163 (48/2937) 0 * Os_TE_278617 Os_TE_278611 Chr5 6655284 6655285 + STOWAWAY14_OS 258 0.0003 (1/2921) 0 * * Os_TE_278602 Chr5 6649462 6649463 + TWIF 586 0.0014 (4/2930) 0 * Os_TE_278601 Os_TE_278601 Chr5 6649455 6649454 - ORSiTETNOOT00134 607 0.0014 (4/2922) 0 * Os_TE_278602 Os_TE_278577 Chr5 6642750 6642751 + RIREX_LTR 8828 0.0010 (3/2961) 0 * Os_TE_278576 Os_TE_278576 Chr5 6642746 6642745 - RIREX_LTR 8828 0.0010 (3/2952) 0 * Os_TE_278577 Os_TE_278565 Chr5 6638391 6638392 - RIREX_LTR 8828 0.0003 (1/2975) 0 * Os_TE_278564 Os_TE_278564 Chr5 6638387 6638386 + RIREX_LTR 8828 0.0003 (1/2975) 0 * Os_TE_278565 Os_TE_278466 Chr5 6607180 6607181 - SZ-46LTR 3360 0.0010 (1/973) -1 * * Os_TE_278456 Chr5 6603856 6603855 - RETRO1_LTR 8314 0.2960 (839/2834) 0 * * Os_TE_278451 Chr5 6601170 6601171 + TRUNCATOR2_LTR 2904 0.0017 (5/2990) 0 * Os_TE_278450 Os_TE_278450 Chr5 6601166 6601165 - TRUNCATOR2_LTR 2904 0.0017 (5/2968) 0 * Os_TE_278451 Os_TE_278447 Chr5 6600025 6600026 - COPIA2-LTR_OS 6433 0.0486 (145/2985) 0 * Os_TE_278446 Os_TE_278446 Chr5 6600021 6600020 + COPIA2-LTR_OS 6433 0.0003 (1/2861) 0 * Os_TE_278447 Os_TE_278445 Chr5 6599620 6599619 - COPI2_LTR 4733 0.0003 (1/2945) 0 * * Os_TE_278443 Chr5 6598785 6598786 + RIREX_LTR 8828 0.0006 (1/1752) 0 * Os_TE_278442 Os_TE_278442 Chr5 6598781 6598780 - RIREX_LTR 8828 0.0006 (1/1753) 0 * Os_TE_278443 Os_TE_278437 Chr5 6593856 6593855 - RETROSAT4_LTR 13504 0.0003 (1/2980) 0 * * Os_TE_278409 Chr5 6584908 6584907 - STOWAWAY51_OS 246 0.0003 (1/2973) 0 * Os_TE_278408 Os_TE_278408 Chr5 6584902 6584903 + STOWAWAY51_OS 246 0.0003 (1/2976) 0 * Os_TE_278409 Os_TE_278380 Chr5 6574830 6574829 + SZ-9LTR 965 0.0020 (5/2450) 0 * * Os_TE_278357 Chr5 6564635 6564634 + ORSiTERTOOT00226 792 0.0003 (1/2999) 0 * * Os_TE_278353 Chr5 6563654 6563655 + STOWAWAY51_OS 246 0.0003 (1/2955) 0 * * Os_TE_278345 Chr5 6563307 6563308 + ORSgTEMT01602088 230 0.0004 (1/2801) 0 * * Os_TE_278331 Chr5 6560022 6560023 + COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_278330 Os_TE_278330 Chr5 6560018 6560017 - COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_278331 Os_TE_278310 Chr5 6551360 6551361 + TWIF 586 0.0088 (26/2962) 0 * * Os_TE_278278 Chr5 6548017 6548018 + TRUNCATOR 2918 0.0004 (1/2803) 0 * * Os_TE_278276 Chr5 6546908 6546909 + COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_278275 Os_TE_278275 Chr5 6546904 6546903 - COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_278276 Os_TE_278270 Chr5 6540935 6540936 + AMYLTP 383 0.0014 (4/2827) 0 * Os_TE_278269 Os_TE_278269 Chr5 6540927 6540926 - AMYLTP 383 0.0014 (4/2822) 0 * Os_TE_278270 Os_TE_278197 Chr5 6503953 6503954 + COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * * Os_TE_278195 Chr5 6503133 6503134 - COPIA2-LTR_OS 6433 0.0017 (5/2968) 0 * Os_TE_278194 Os_TE_278194 Chr5 6503129 6503128 + COPIA2-LTR_OS 6433 0.0017 (5/2961) 0 * Os_TE_278195 Os_TE_278177 Chr5 6500020 6500019 + SPMLIKE 10989 0.1723 (509/2955) 0 * * Os_TE_278107 Chr5 6482781 6482782 - MPING 430 0.0028 (8/2814) 0 * Os_TE_278106 Os_TE_278106 Chr5 6482779 6482778 + MPING 430 0.0029 (8/2770) 0 * Os_TE_278107 Os_TE_278082 Chr5 6478590 6478589 + ORSiTERTOOT00226 792 0.0004 (1/2701) 0 * * Os_TE_278068 Chr5 6476535 6476536 - TYPEM 227 0.0003 (1/2946) 0 * Os_TE_278067 Os_TE_278067 Chr5 6476534 6476533 - ORSgTEMT02400179 221 0.0003 (1/2937) 0 * Os_TE_278068 Os_TE_278065 Chr5 6474997 6474998 + INDITTO 263 0.0013 (4/2985) 0 * Os_TE_278064 Os_TE_278064 Chr5 6474995 6474994 - INDITTO 263 0.0013 (4/2978) 0 * Os_TE_278065 Os_TE_278041 Chr5 6467309 6467310 + TELIA 141 0.0040 (12/2982) 0 * Os_TE_278040 Os_TE_278040 Chr5 6467301 6467300 - TELIA 141 0.0044 (13/2963) 0 * Os_TE_278041 Os_TE_278011 Chr5 6455408 6455407 + CPSC4A_LTR 5182 0.0007 (2/2895) 0 * * Os_TE_277870 Chr5 6414784 6414785 - SC-10_LTR 4920 0.0202 (57/2817) 0 * Os_TE_277869 Os_TE_277869 Chr5 6414780 6414779 + SC-10_LTR 4920 0.0186 (55/2958) 0 * Os_TE_277870 Os_TE_277811 Chr5 6398870 6398871 + OSR3_LTR 5201 0.0018 (5/2852) 0 * Os_TE_277810 Os_TE_277810 Chr5 6398866 6398865 - OSR3_LTR 5201 0.0018 (5/2852) 0 * Os_TE_277811 Os_TE_277799 Chr5 6395691 6395690 - INDITTO 263 0.0488 (146/2992) 0 * * Os_TE_277798 Chr5 6395370 6394403 - COPIA2-LTR_OS 6433 0.6502 (1924/2959) 1 Solo_LTR Os_TE_277797 Os_TE_277797 Chr5 6394403 6395370 + COPIA2-LTR_OS 6433 0.6377 (1859/2915) 1 Solo_LTR Os_TE_277798 Os_TE_277782 Chr5 6391930 6391931 + MPING 430 0.0007 (2/2877) 0 * * Os_TE_277779 Chr5 6389987 6389988 - OSTE20 496 0.0010 (3/2972) 0 * Os_TE_277778 Os_TE_277778 Chr5 6389983 6389982 - OSTE20 496 0.0010 (3/2974) 0 * Os_TE_277779 Os_TE_277738 Chr5 6374866 6374865 + CASTAWAY 364 0.0004 (1/2796) 0 * * Os_TE_277695 Chr5 6352361 6352362 - ORSgTEMT00600304 361 0.0017 (5/2940) 0 * Os_TE_277694 Os_TE_277694 Chr5 6352358 6352357 - CASTAWAY 364 0.0017 (5/2941) 0 * Os_TE_277695 Os_TE_277687 Chr5 6351068 6351069 - ORSgTETN00200001 10994 0.0430 (127/2955) 0 * Os_TE_277686 Os_TE_277686 Chr5 6351066 6351065 + SPMLIKE 10989 0.0494 (147/2976) 0 * Os_TE_277687 Os_TE_277654 Chr5 6337368 6337369 - RETRO2_LTR 12874 0.1784 (534/2993) 0 * Os_TE_277653 Os_TE_277653 Chr5 6337364 6337363 + RETRO2_LTR 12874 0.1790 (536/2994) 0 * Os_TE_277654 Os_TE_277652 Chr5 6335535 6335534 + RETROSAT4_LTR 13504 0.1618 (481/2972) 0 * * Os_TE_277623 Chr5 6320285 6320284 - SZ-40LTR 2465 0.0007 (2/2996) 0 * * Os_TE_277616 Chr5 6318532 6318533 - RIRE5-LTR_OS 6427 0.0007 (2/2985) 0 * * Os_TE_277613 Chr5 6317417 6317416 + ORSgTEMT01602181 239 0.1560 (454/2910) 0 * Os_TE_277612 Os_TE_277612 Chr5 6317414 6317415 + ORSgTEMT01602181 239 0.1694 (501/2957) 0 * Os_TE_277613 Os_TE_277611 Chr5 6317325 6317326 + ORSiTERTOOT00074 4935 0.0003 (1/2914) 0 * Os_TE_277610 Os_TE_277610 Chr5 6317321 6317320 - ORSiTERTOOT00074 4935 0.0003 (1/2912) 0 * Os_TE_277611 Os_TE_277587 Chr5 6308306 6308307 + SPMLIKE 10989 0.0062 (18/2926) 0 * Os_TE_277586 Os_TE_277586 Chr5 6308304 6308303 - ORSgTETN00200001 10994 0.0052 (15/2908) 0 * Os_TE_277587 Os_TE_277576 Chr5 6306124 6306125 - TESSBIG 4057 0.0037 (11/2988) 0 * Os_TE_277575 Os_TE_277575 Chr5 6306117 6306116 + TESSBIG 4057 0.0030 (9/2989) 0 * Os_TE_277576 Os_TE_277573 Chr5 6305266 6305267 + COPI2_LTR 4733 0.0003 (1/2993) 0 * * Os_TE_277553 Chr5 6298568 6298569 - ORSgTETN00200001 10994 0.0003 (1/2981) 0 * Os_TE_277552 Os_TE_277552 Chr5 6298566 6298565 + SPMLIKE 10989 0.0003 (1/2973) 0 * Os_TE_277553 Os_TE_277551 Chr5 6297600 6297599 - RIREX_LTR 8828 0.0003 (1/2984) 0 * * Os_TE_277542 Chr5 6292176 6292177 + ORSgTEMT00300063 413 0.1821 (491/2697) 0 * * Os_TE_277533 Chr5 6289687 6289686 - STOWAWAY51_OS 246 0.0058 (16/2752) 0 * Os_TE_277532 Os_TE_277532 Chr5 6289681 6289682 + STOWAWAY51_OS 246 0.0058 (16/2776) 0 * Os_TE_277533 Os_TE_277529 Chr5 6289189 6289190 - SZ-22_LTR 4403 0.0003 (1/2927) 0 * Os_TE_277528 Os_TE_277528 Chr5 6289185 6289184 + ORSiTERTOOT00226 792 0.0003 (1/2934) 0 * Os_TE_277529 Os_TE_277518 Chr5 6285548 6285549 - TRUNCATOR2_LTR 2904 0.0067 (20/2991) 0 * * Os_TE_277500 Chr5 6282950 6282951 - ORSgTEMT02400248 224 0.0010 (3/2984) 0 * * Os_TE_277499 Chr5 6282727 6282728 - TELIA 141 0.0034 (10/2950) 0 * Os_TE_277498 Os_TE_277498 Chr5 6282725 6282724 + TELIA 141 0.0034 (10/2961) 0 * Os_TE_277499 Os_TE_277481 Chr5 6272605 6272604 + ORSgTEMT01601591 242 0.0003 (1/2984) 0 * * Os_TE_277473 Chr5 6268707 6268708 - MPING 430 0.0336 (90/2680) 0 * Os_TE_277472 Os_TE_277472 Chr5 6268705 6268704 + MPING 430 0.0358 (96/2683) 0 * Os_TE_277473 Os_TE_277444 Chr5 6258461 6258462 + ORSgTETNOOT00908 242 0.0017 (5/2975) 0 * * Os_TE_277428 Chr5 6251325 6251326 - EnSpm-13_OS 11171 0.0003 (1/2987) 0 * * Os_TE_277423 Chr5 6250757 6250758 - ORSiTERT00200154 9386 0.0057 (17/2981) 0 * Os_TE_277422 Os_TE_277422 Chr5 6250751 6250750 + TRUNCATOR 2918 0.0060 (18/2980) 0 * Os_TE_277423 Os_TE_277398 Chr5 6239584 6239585 - INDITTO 263 0.0033 (10/2987) 0 * Os_TE_277397 Os_TE_277397 Chr5 6239582 6239581 + INDITTO 263 0.0034 (10/2984) 0 * Os_TE_277398 Os_TE_277396 Chr5 6239241 6239242 + ORSgTEMT00600120 364 0.1854 (554/2988) 0 * Os_TE_277395 Os_TE_277395 Chr5 6239239 6239238 - CASTAWAY 364 0.1821 (543/2982) 0 * Os_TE_277396 Os_TE_277380 Chr5 6222972 6222971 + ORSgTEMT00500476 150 0.0013 (4/2997) 0 * * Os_TE_277369 Chr5 6220715 6220716 + F569 228 0.0007 (2/2971) 0 * Os_TE_277368 Os_TE_277368 Chr5 6220713 6220712 - F569 228 0.0007 (2/2977) 0 * Os_TE_277369 Os_TE_277331 Chr5 6211939 6211938 + SEVERIN-2 1952 0.1806 (529/2929) 0 * * Os_TE_277329 Chr5 6211844 6211845 - SPMLIKE 10989 0.2639 (778/2948) 0 * Os_TE_277328 Os_TE_277328 Chr5 6211842 6211841 + SPMLIKE 10989 0.2712 (805/2968) 0 * Os_TE_277329 Os_TE_277324 Chr5 6210728 6210962 - ORSgTEMT01600791 234 0.8273 (2396/2896) 1 Intact * Os_TE_277313 Chr5 6206556 6206061 - ORSgTETNOOT00384 265 0.8953 (2497/2789) 1 Intact Os_TE_277306 Os_TE_277306 Chr5 6206061 6206556 - ORSgTETNOOT00095 306 0.7755 (1713/2209) 1 Intact Os_TE_277313 Os_TE_277305 Chr5 6205427 6205186 + ORSgTETNOOT00908 242 0.6267 (1526/2435) 1 Intact * Os_TE_277301 Chr5 6205162 6205163 - MPING 430 0.0024 (7/2901) 0 * Os_TE_277300 Os_TE_277300 Chr5 6205160 6205159 + MPING 430 0.0033 (7/2152) 0 * Os_TE_277301 Os_TE_277298 Chr5 6205087 6205088 + STOWAWAY51_OS 246 0.0003 (1/2949) 0 * * Os_TE_277290 Chr5 6203183 6197839 + EnSpm-13_OS 11171 0.7841 (1780/2270) 1 Intact * Os_TE_277278 Chr5 6197247 6197246 - ENSPM4_OS 11610 0.1772 (526/2969) 0 * * Os_TE_277277 Chr5 6197030 6196753 - SUSU 279 0.8326 (2467/2963) 1 Intact * Os_TE_277270 Chr5 6196462 6196728 + ORSgTEMT05000092 279 0.8341 (2498/2995) 1 Intact * Os_TE_277254 Chr5 6190946 6190945 - COPIA2-LTR_OS 6433 0.0007 (2/2978) 0 * * Os_TE_277250 Chr5 6190522 6190523 + ORSgTETNOOT00908 242 0.0012 (3/2508) 0 * * Os_TE_277202 Chr5 6175326 6175325 + ORSgTETNOOT01930 140 0.0012 (3/2503) 0 * * Os_TE_277190 Chr5 6172013 6172014 - COPI2_LTR 4733 0.0003 (1/2960) 0 * Os_TE_277189 Os_TE_277189 Chr5 6172009 6172008 + COPI2_LTR 4733 0.0004 (1/2498) 0 * Os_TE_277190 Os_TE_277187 Chr5 6170758 6170759 + ENSPM4_OS 11610 0.1666 (489/2936) 0 * * Os_TE_277186 Chr5 6170306 6169819 + CLOUD-7 495 0.8184 (2298/2808) 1 Intact Os_TE_277185 Os_TE_277185 Chr5 6169818 6170305 + CLOUD-7 495 0.8290 (2370/2859) 1 Intact Os_TE_277186 Os_TE_277180 Chr5 6167215 6167216 - STOWAWAY47_OS 148 0.0014 (4/2945) 0 * * Os_TE_277179 Chr5 6166292 6166293 + ORSgTETNOOT00908 242 0.0007 (2/2856) 0 * * Os_TE_277166 Chr5 6162221 6162222 + STOWAWAY18_OS 216 0.0003 (1/2974) 0 * * Os_TE_277143 Chr5 6158858 6158859 - COPIA2-LTR_OS 6433 0.0386 (112/2899) 0 * Os_TE_277142 Os_TE_277142 Chr5 6158854 6158853 + COPIA2-LTR_OS 6433 0.0381 (112/2940) 0 * Os_TE_277143 Os_TE_277136 Chr5 6156614 6156615 - ORSiTERT00200154 9386 0.3920 (1171/2987) 0 * * Os_TE_277100 Chr5 6149526 6149525 - OLO24 345 0.0003 (1/2888) 0 * * Os_TE_277067 Chr5 6133637 6133638 + RIREX_LTR 8828 0.1801 (538/2988) 0 * * Os_TE_277065 Chr5 6132410 6132409 - ORSgTEMT01601432 239 0.1639 (477/2910) 0 * Os_TE_277064 Os_TE_277064 Chr5 6132407 6132408 + ORSgTEMT01602181 239 0.1713 (503/2937) 0 * Os_TE_277065 Os_TE_277061 Chr5 6132128 6132127 - COPIA2-LTR_OS 6433 0.0010 (3/2998) 0 * * Os_TE_277025 Chr5 6103821 6103822 - SZ-25LTR 330 0.0014 (4/2907) 0 * Os_TE_277024 Os_TE_277024 Chr5 6103817 6103816 + COPI1_LTR 4721 0.0014 (4/2919) 0 * Os_TE_277025 Os_TE_277014 Chr5 6100857 6100858 - ENSPM3_OS 10837 0.0010 (3/2955) 0 * Os_TE_277013 Os_TE_277013 Chr5 6100855 6100854 + ENSPM3_OS 10837 0.0010 (3/2956) 0 * Os_TE_277014 Os_TE_276984 Chr5 6090191 6090190 - MERMITE18B 1306 0.0016 (4/2572) 0 * * Os_TE_276980 Chr5 6088680 6088681 + GYPSY-A_LTR 8951 0.0010 (3/2996) 0 * Os_TE_276979 Os_TE_276979 Chr5 6088676 6088675 - GYPSY-A_LTR 8951 0.0010 (3/2997) 0 * Os_TE_276980 Os_TE_276951 Chr5 6081653 6081654 - ORSgTEMT00700002 381 0.0003 (1/2944) 0 * * Os_TE_276950 Chr5 6081441 6081442 + ORSgTETNOOT01930 140 0.0010 (3/2996) 0 * Os_TE_276949 Os_TE_276949 Chr5 6081439 6081438 + ORSgTETNOOT00906 136 0.0010 (3/2994) 0 * Os_TE_276950 Os_TE_276948 Chr5 6080937 6080936 + ORSgTEMT01701634 154 0.0010 (3/2987) 0 * * Os_TE_276929 Chr5 6069860 6069861 + SZ-40LTR 2465 0.0003 (1/2963) 0 * Os_TE_276928 Os_TE_276928 Chr5 6069856 6069855 - SZ-40LTR 2465 0.0003 (1/2963) 0 * Os_TE_276929 Os_TE_276926 Chr5 6069317 6069318 - RIREX_LTR 8828 0.0074 (22/2985) 0 * Os_TE_276925 Os_TE_276925 Chr5 6069313 6069312 + RIREX_LTR 8828 0.0074 (22/2984) 0 * Os_TE_276926 Os_TE_276920 Chr5 6067148 6067149 - TESSBIG 4057 0.0003 (1/2978) 0 * * Os_TE_276906 Chr5 6059829 6059830 - JOUZHENA 607 0.0087 (26/2990) 0 * * Os_TE_276903 Chr5 6058723 6058722 + OSTE20 496 0.3668 (1097/2991) 0 * * Os_TE_276886 Chr5 6054458 6054459 + COPI2_LTR 4733 0.0003 (1/2896) 0 * * Os_TE_276885 Chr5 6052942 6052607 + ORSgTEMT00101341 314 0.5920 (1722/2909) 1 Intact * Os_TE_276874 Chr5 6048153 6048154 - SZ-55_LTR 10318 0.1912 (571/2987) 0 * Os_TE_276873 Os_TE_276873 Chr5 6048149 6048148 + SZ-55_LTR 10318 0.1963 (588/2995) 0 * Os_TE_276874 Os_TE_276851 Chr5 6040481 6033140 - MERMITE18C 1473 0.5539 (1609/2905) 1 Intact Os_TE_276846 Os_TE_276846 Chr5 6033140 6040477 - MERMITE18C 1473 0.5577 (1625/2914) 1 Intact Os_TE_276851 Os_TE_276818 Chr5 6018802 6032108 - RPO_OS 1983 0.5921 (1579/2667) 1 Intact * Os_TE_276811 Chr5 6018193 6018194 - OSTE15 1168 0.0004 (1/2727) 0 * * Os_TE_276798 Chr5 6013474 6014329 - MUDRN1_OS 764 0.5511 (1607/2916) 1 Intact * Os_TE_276791 Chr5 6010676 6010677 - STOWAWAY1_OS 149 0.4076 (1130/2772) 0 * * Os_TE_276787 Chr5 6008179 6006923 + CACTA-B 1103 0.5671 (1377/2428) 1 Intact * Os_TE_276784 Chr5 6006291 6005859 - ORSgTEMT01601178 230 0.5636 (1618/2871) 1 Intact Os_TE_276782 Os_TE_276782 Chr5 6005859 6006087 + ORSgTEMT01601525 239 0.5530 (1606/2904) 1 Intact Os_TE_276784 Os_TE_276780 Chr5 6005721 6005720 - ENSPM6_OS 9815 0.0003 (1/2946) 0 * * Os_TE_276765 Chr5 6001991 6001744 - ORSgTEMT00900099 250 0.5641 (1689/2994) 1 Intact Os_TE_276762 Os_TE_276762 Chr5 6001742 6001991 + ORSgTEMT00901844 250 0.5622 (1677/2983) 1 Intact Os_TE_276765 Os_TE_276756 Chr5 5996044 5996045 - FOCUS 257 0.0003 (1/2970) 0 * * Os_TE_276705 Chr5 5972227 5972228 - COPIA2-LTR_OS 6433 0.0018 (3/1708) -1 * Os_TE_276704 Os_TE_276704 Chr5 5972223 5972222 + COPIA2-LTR_OS 6433 0.0011 (2/1772) 0 * Os_TE_276705 Os_TE_276696 Chr5 5969702 5969703 + SZ-5LTR 1223 0.0007 (2/2900) 0 * * Os_TE_276685 Chr5 5967590 5967591 - TYPEH 309 0.0033 (10/2996) 0 * * Os_TE_276675 Chr5 5961505 5961504 - TRUNCATOR 2918 0.0003 (1/2980) 0 * * Os_TE_276653 Chr5 5953720 5953721 - OSTE17 734 0.0034 (10/2943) 0 * Os_TE_276652 Os_TE_276652 Chr5 5953712 5953711 - OSTE17 734 0.0034 (10/2934) 0 * Os_TE_276653 Os_TE_276641 Chr5 5950694 5950693 - COPI2_LTR 4733 0.0003 (1/2980) 0 * * Os_TE_276633 Chr5 5947676 5947677 - CLOUD 734 0.0004 (1/2809) 0 * * Os_TE_276618 Chr5 5938886 5938887 - ORSgTEMT00600484 344 0.0048 (14/2890) 0 * Os_TE_276617 Os_TE_276617 Chr5 5938882 5938881 - ORSgTEMT00600085 364 0.0035 (10/2888) 0 * Os_TE_276618 Os_TE_276615 Chr5 5938623 5938624 - UNIQUE 158 0.0004 (1/2843) 0 * * Os_TE_276610 Chr5 5937747 5937748 - CASLET 354 0.0003 (1/2915) 0 * Os_TE_276609 Os_TE_276609 Chr5 5937745 5937744 + CASLET 354 0.0003 (1/2906) 0 * Os_TE_276610 Os_TE_276587 Chr5 5925617 5925618 - RIREX_LTR 8828 0.0010 (3/2970) 0 * Os_TE_276586 Os_TE_276586 Chr5 5925613 5925612 + RIREX_LTR 8828 0.0010 (3/2972) 0 * Os_TE_276587 Os_TE_276577 Chr5 5922205 5922206 + HARB-1_OS 5166 0.0003 (1/2995) 0 * Os_TE_276576 Os_TE_276576 Chr5 5922203 5922202 - HARB-1_OS 5166 0.0003 (1/2990) 0 * Os_TE_276577 Os_TE_276575 Chr5 5922156 5922157 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_276574 Os_TE_276574 Chr5 5922152 5922151 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_276575 Os_TE_276570 Chr5 5919893 5919892 - ORSgTEMT00900965 216 0.0003 (1/2966) 0 * Os_TE_276569 Os_TE_276569 Chr5 5919887 5919888 - ORSgTEMT00900467 235 0.0003 (1/2962) 0 * Os_TE_276570 Os_TE_276567 Chr5 5918918 5918917 + COPIA2-LTR_OS 6433 0.0004 (1/2763) 0 * * Os_TE_276534 Chr5 5901554 5901553 + ORSgTEMT01700637 157 0.0003 (1/2987) 0 * Os_TE_276533 Os_TE_276533 Chr5 5901519 5901520 - STOWAWAY1_OS 149 0.0003 (1/2982) 0 * Os_TE_276534 Os_TE_276495 Chr5 5886960 5886959 - TRUNCATOR 2918 0.0010 (3/2992) 0 * * Os_TE_276481 Chr5 5883358 5883359 - COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_276480 Os_TE_276480 Chr5 5883354 5883353 + COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_276481 Os_TE_276459 Chr5 5876547 5876548 + STOWAWAY1_OS 149 0.0003 (1/2902) 0 * * Os_TE_276438 Chr5 5868216 5868217 - SZ-7A_LTR 11400 0.0003 (1/2968) 0 * Os_TE_276437 Os_TE_276437 Chr5 5868212 5868211 + ORSiTERTOOT00291 11421 0.0003 (1/2967) 0 * Os_TE_276438 Os_TE_276421 Chr5 5863716 5863717 + MPING 430 0.0017 (5/2971) 0 * Os_TE_276420 Os_TE_276420 Chr5 5863714 5863713 - MPING 430 0.0010 (3/2980) 0 * Os_TE_276421 Os_TE_276419 Chr5 5863704 5863703 + ORSgTEMT01602004 234 0.0007 (2/2968) 0 * * Os_TE_276399 Chr5 5855983 5855984 + TNR2A 152 0.0035 (10/2854) 0 * * Os_TE_276389 Chr5 5853916 5853915 + CRM-LTR_OS 7749 0.0003 (1/2996) 0 * * Os_TE_276381 Chr5 5850731 5850732 - F569 228 0.0021 (2/959) 0 * * Os_TE_276380 Chr5 5850725 5851833 - RETRO2_LTR 12874 0.3153 (932/2956) 1 Solo_LTR * Os_TE_276318 Chr5 5823522 5823521 + CACTA-H 1152 0.0003 (1/2975) 0 * * Os_TE_276314 Chr5 5823327 5823328 - ORSgTETNOOT02565 240 0.0003 (1/2965) 0 * * Os_TE_276309 Chr5 5820400 5820399 + TRUNCATOR 2918 0.0013 (4/2995) 0 * Os_TE_276308 Os_TE_276308 Chr5 5820399 5820400 - TRUNCATOR 2918 0.0010 (3/2993) 0 * Os_TE_276309 Os_TE_276292 Chr5 5809545 5809546 + SINE9_OS 293 0.0003 (1/2945) 0 * * Os_TE_276290 Chr5 5808455 5808456 + COPI2_LTR 4733 0.0003 (1/2973) 0 * Os_TE_276289 Os_TE_276289 Chr5 5808451 5808450 - COPI2_LTR 4733 0.0003 (1/2977) 0 * Os_TE_276290 Os_TE_276285 Chr5 5808048 5808047 - TYPEH 309 0.0003 (1/2940) 0 * * Os_TE_276280 Chr5 5807056 5807057 - INDITTO 263 0.0030 (9/2961) 0 * Os_TE_276279 Os_TE_276279 Chr5 5807054 5807053 + INDITTO 263 0.0027 (8/2962) 0 * Os_TE_276280 Os_TE_276278 Chr5 5806337 5806336 - CASTAWAY 364 0.0003 (1/2971) 0 * * Os_TE_276246 Chr5 5787389 5787388 + STOWAWAY49_OS 241 0.0004 (1/2588) 0 * * Os_TE_276213 Chr5 5766667 5766668 + TRUNCATOR 2918 0.2742 (814/2969) 0 * * Os_TE_276188 Chr5 5752801 5752802 - RETRO3_LTR 12751 0.4561 (597/1309) 0 * * Os_TE_276123 Chr5 5701164 5701165 + TNR2A 152 0.0991 (68/686) 0 * * Os_TE_276070 Chr5 5675064 5675300 - TREP215 239 0.2657 (670/2522) 1 Intact * Os_TE_276069 Chr5 5675022 5675021 - ORSgTEMT00901269 237 0.6654 (1716/2579) 0 * * Os_TE_276068 Chr5 5674348 5674347 + CACTA-M 1129 0.1134 (336/2962) 0 * Os_TE_276067 Os_TE_276067 Chr5 5674347 5674348 - CACTA-D 1038 0.1157 (343/2964) 0 * Os_TE_276068 Os_TE_276057 Chr5 5671826 5660958 - ORSgTETN00200001 10994 0.2142 (620/2894) 1 Intact Os_TE_276051 Os_TE_276051 Chr5 5660957 5671826 + SPMLIKE 10989 0.2178 (645/2962) 1 Intact Os_TE_276057 Os_TE_276050 Chr5 5660634 5660635 + DEBOAT 110 0.7623 (2053/2693) 0 * * Os_TE_276049 Chr5 5659842 5659843 + ORSiTERTOOT00226 792 0.0266 (77/2898) 0 * * Os_TE_275997 Chr5 5643508 5643509 + ORSiTERTOOT00174 2237 0.0008 (1/1286) 0 * * Os_TE_275996 Chr5 5642804 5642805 + SPMLIKE 10989 0.0029 (3/1017) 0 * Os_TE_275995 Os_TE_275995 Chr5 5642802 5642801 - ORSgTETN00200001 10994 0.0039 (4/1019) 0 * Os_TE_275996 Os_TE_275981 Chr5 5639575 5639574 + ENSPM4_OS 11610 0.0293 (58/1978) 0 * * Os_TE_275951 Chr5 5629497 5629498 + TRUNCATOR2_LTR 2904 0.0048 (4/840) 0 * * Os_TE_275902 Chr5 5594738 5594739 - MPING 430 0.0007 (2/2994) 0 * Os_TE_275901 Os_TE_275901 Chr5 5594736 5594735 + MPING 430 0.0007 (2/2993) 0 * Os_TE_275902 Os_TE_275899 Chr5 5594511 5594510 - COPI2_LTR 4733 0.0003 (1/2986) 0 * * Os_TE_275891 Chr5 5591834 5591835 - COPIA2-LTR_OS 6433 0.0003 (1/2965) 0 * Os_TE_275890 Os_TE_275890 Chr5 5591830 5591829 + COPIA2-LTR_OS 6433 0.0003 (1/2974) 0 * Os_TE_275891 Os_TE_275887 Chr5 5591042 5591043 + ORSiCMCM00100019 2717 0.0003 (1/2995) 0 * Os_TE_275886 Os_TE_275886 Chr5 5591038 5591037 - TRUNCATOR2_LTR 2904 0.0003 (1/2994) 0 * Os_TE_275887 Os_TE_275885 Chr5 5590194 5590193 - HATOS1 3488 0.0271 (81/2986) 0 * * Os_TE_275883 Chr5 5589371 5589372 + RIREX_LTR 8828 0.0003 (1/2978) 0 * Os_TE_275882 Os_TE_275882 Chr5 5589367 5589366 - RIREX_LTR 8828 0.0003 (1/2982) 0 * Os_TE_275883 Os_TE_275865 Chr5 5584404 5571851 - RETRO2_LTR 12874 0.2826 (770/2725) 1 Intact * Os_TE_275833 Chr5 5555283 5555284 + MPING 430 0.0003 (1/2993) 0 * Os_TE_275832 Os_TE_275832 Chr5 5555281 5555280 - MPING 430 0.0003 (1/2995) 0 * Os_TE_275833 Os_TE_275826 Chr5 5552365 5552366 + MERMITE18C 1473 0.0003 (1/2988) 0 * Os_TE_275825 Os_TE_275825 Chr5 5552361 5552360 - MERMITE-18 1263 0.0003 (1/2985) 0 * Os_TE_275826 Os_TE_275811 Chr5 5548316 5548317 + CASTAWAY 364 0.0003 (1/2988) 0 * * Os_TE_275808 Chr5 5547580 5547581 + AMYLTP 383 0.2082 (619/2973) 0 * Os_TE_275807 Os_TE_275807 Chr5 5547572 5547571 - AMYLTP 383 0.2026 (599/2957) 0 * Os_TE_275808 Os_TE_275805 Chr5 5546630 5546631 - SZ-35LTR 3853 0.0355 (106/2987) 0 * * Os_TE_275797 Chr5 5545468 5545467 + YOUREN 286 0.0024 (7/2949) 0 * * Os_TE_275786 Chr5 5545021 5545020 - INDITTO 263 0.0027 (8/2983) 0 * * Os_TE_275769 Chr5 5543209 5543208 + ORSgTEMT01702031 156 0.0030 (9/2979) 0 * Os_TE_275768 Os_TE_275768 Chr5 5543208 5543209 + STOWAWAY1_OS 149 0.0030 (9/2974) 0 * Os_TE_275769 Os_TE_275765 Chr5 5541766 5541767 + RETRO2A_LTR 12895 0.0031 (9/2897) 0 * * Os_TE_275746 Chr5 5536086 5536087 - CPSC2_LTR 5202 0.0003 (1/2999) 0 * Os_TE_275745 Os_TE_275745 Chr5 5536082 5536081 + CPSC2_LTR 5202 0.0003 (1/2999) 0 * Os_TE_275746 Os_TE_275737 Chr5 5533874 5533875 - ORSgTETN00200001 10994 0.0010 (3/2878) 0 * Os_TE_275736 Os_TE_275736 Chr5 5533872 5533871 + SPMLIKE 10989 0.0011 (3/2854) 0 * Os_TE_275737 Os_TE_275697 Chr5 5520474 5520473 + COPIA2-LTR_OS 6433 0.0003 (1/2974) 0 * Os_TE_275696 Os_TE_275696 Chr5 5520473 5520474 - COPIA2-LTR_OS 6433 0.0003 (1/2974) 0 * Os_TE_275697 Os_TE_275607 Chr5 5480033 5480034 - OSTE18 129 0.0013 (4/2985) 0 * * Os_TE_275604 Chr5 5477341 5477340 + ORSiTERT00400052 469 0.0335 (99/2955) 0 * * Os_TE_275599 Chr5 5476460 5476461 - CACTA-M 1129 0.0017 (5/2994) 0 * Os_TE_275598 Os_TE_275598 Chr5 5476458 5476457 + CACTA-M 1129 0.0017 (5/2992) 0 * Os_TE_275599 Os_TE_275581 Chr5 5468335 5468336 - NDNA1TNA_OS 334 0.0192 (50/2598) 0 * * Os_TE_275559 Chr5 5458140 5458141 + ORSiOTOT00000037 220 0.0010 (3/2990) 0 * * Os_TE_275557 Chr5 5457342 5457341 + COPI2_LTR 4733 0.0003 (1/2894) 0 * * Os_TE_275550 Chr5 5456132 5456133 - TRUNCATOR2_LTR 2904 0.0765 (228/2980) 0 * Os_TE_275549 Os_TE_275549 Chr5 5456128 5456127 + TRUNCATOR2_LTR 2904 0.0653 (193/2957) 0 * Os_TE_275550 Os_TE_275543 Chr5 5453977 5453978 + SPMLIKE 10989 0.0003 (1/2994) 0 * Os_TE_275542 Os_TE_275542 Chr5 5453975 5453974 - ORSgTETN00200001 10994 0.0003 (1/2993) 0 * Os_TE_275543 Os_TE_275538 Chr5 5449945 5449946 + MERMITEA 1710 0.0003 (1/2937) 0 * * Os_TE_275527 Chr5 5445810 5445811 + INDITTO 263 0.0014 (4/2959) 0 * Os_TE_275526 Os_TE_275526 Chr5 5445808 5445807 - INDITTO 263 0.0013 (4/2979) 0 * Os_TE_275527 Os_TE_275515 Chr5 5439729 5439728 + STOWAWAY50_OS 174 0.0003 (1/2974) 0 * * Os_TE_275489 Chr5 5425111 5425112 - STOWAWAY43_OS 233 0.0007 (2/2972) 0 * * Os_TE_275483 Chr5 5418477 5418478 + INDITTO 263 0.4408 (1306/2963) 0 * Os_TE_275482 Os_TE_275482 Chr5 5418475 5418474 - INDITTO 263 0.4319 (1277/2957) 0 * Os_TE_275483 Os_TE_275474 Chr5 5414617 5414618 - INDITTO 263 0.0233 (69/2958) 0 * Os_TE_275473 Os_TE_275473 Chr5 5414615 5414614 + INDITTO 263 0.0234 (69/2949) 0 * Os_TE_275474 Os_TE_275472 Chr5 5414261 5414262 - RETROSAT2LTRA 3112 0.0239 (64/2676) 0 * * Os_TE_275468 Chr5 5412537 5412536 - ORSgTEMT00501504 140 0.0003 (1/2983) 0 * Os_TE_275467 Os_TE_275467 Chr5 5412536 5412537 - ORSgTEMT00501447 126 0.0003 (1/2985) 0 * Os_TE_275468 Os_TE_275449 Chr5 5410039 5405173 + TESSBIG 4057 0.3137 (927/2955) 1 Intact * Os_TE_275444 Chr5 5404459 5405073 + DS-RICE2N 613 0.3206 (952/2969) 1 Intact * Os_TE_275422 Chr5 5398082 5398081 - STOWAWAY44_OS 240 0.0007 (2/2975) 0 * Os_TE_275421 Os_TE_275421 Chr5 5398079 5398080 - STOWAWAY44_OS 240 0.0007 (2/2969) 0 * Os_TE_275422 Os_TE_275399 Chr5 5381362 5381363 - ORSgTEMT01602074 239 0.0004 (1/2691) 0 * * Os_TE_275391 Chr5 5380208 5380209 - MPING 430 0.0003 (1/2931) 0 * Os_TE_275390 Os_TE_275390 Chr5 5380206 5380205 + MPING 430 0.0003 (1/2894) 0 * Os_TE_275391 Os_TE_275388 Chr5 5379891 5379892 + ORSgTEMT01601122 212 0.0003 (1/2913) 0 * * Os_TE_275387 Chr5 5379804 5379805 + ORSgTETNOOT02019 240 0.0003 (1/2976) 0 * Os_TE_275386 Os_TE_275386 Chr5 5379802 5379801 + ORSgTETNOOT00908 242 0.0003 (1/2972) 0 * Os_TE_275387 Os_TE_275383 Chr5 5378404 5378405 - SZ-38 8643 0.0003 (1/2944) 0 * * Os_TE_275375 Chr5 5376620 5376621 + INDITTO 263 0.0017 (5/2982) 0 * Os_TE_275374 Os_TE_275374 Chr5 5376618 5376617 - INDITTO 263 0.0017 (5/2985) 0 * Os_TE_275375 Os_TE_275355 Chr5 5374013 5374014 + ORSgTETNOOT01930 140 0.0003 (1/2988) 0 * * Os_TE_275348 Chr5 5371544 5371545 - CLOUD 734 0.0003 (1/2936) 0 * * Os_TE_275340 Chr5 5370495 5370494 - STOWAWAY51_OS 246 0.0003 (1/2966) 0 * * Os_TE_275336 Chr5 5369557 5369558 - COPIA2-LTR_OS 6433 0.0003 (1/2951) 0 * Os_TE_275335 Os_TE_275335 Chr5 5369553 5369552 + COPIA2-LTR_OS 6433 0.0003 (1/2952) 0 * Os_TE_275336 Os_TE_275328 Chr5 5367357 5367356 + ORSgTEMT00500476 150 0.0003 (1/2924) 0 * * Os_TE_275273 Chr5 5346513 5346514 + MERMITE18E 1528 0.0003 (1/2960) 0 * * Os_TE_275261 Chr5 5343807 5343583 - ORSgTEMT02400246 177 0.8162 (2433/2981) 1 Intact Os_TE_275260 Os_TE_275260 Chr5 5343583 5343807 - ORSgTEMT02400092 225 0.8159 (2438/2988) 1 Intact Os_TE_275261 Os_TE_275234 Chr5 5332226 5332655 + ORSgTEMT00300064 397 0.8810 (2435/2764) 1 Intact * Os_TE_275233 Chr5 5332214 5332215 + TWIFB1 3737 0.0572 (167/2922) 0 * * Os_TE_275230 Chr5 5332101 5332100 + ORSgTEMT05000092 279 0.0003 (1/2889) 0 * * Os_TE_275227 Chr5 5330707 5330708 + RIREX_LTR 8828 0.0003 (1/2971) 0 * Os_TE_275226 Os_TE_275226 Chr5 5330703 5330702 - RIREX_LTR 8828 0.0003 (1/2968) 0 * Os_TE_275227 Os_TE_275186 Chr5 5315734 5315733 - TRUNCATOR 2918 0.0010 (3/2860) 0 * Os_TE_275185 Os_TE_275185 Chr5 5315733 5315734 + TRUNCATOR 2918 0.0011 (3/2856) 0 * Os_TE_275186 Os_TE_275178 Chr5 5314446 5314445 + ORSgTETN00200005 1121 0.0011 (3/2713) 0 * Os_TE_275177 Os_TE_275177 Chr5 5314445 5314446 + CACTA-H 1152 0.0011 (3/2717) 0 * Os_TE_275178 Os_TE_275157 Chr5 5310614 5310613 - DS-RICE4N 715 0.0003 (1/2976) 0 * * Os_TE_275140 Chr5 5306988 5306989 + ORSgTETNOOT01930 140 0.0003 (1/2996) 0 * * Os_TE_275139 Chr5 5306923 5306924 - INDITTO 263 0.0017 (5/2996) 0 * Os_TE_275138 Os_TE_275138 Chr5 5306921 5306920 + INDITTO 263 0.0017 (5/2993) 0 * Os_TE_275139 Os_TE_275137 Chr5 5306783 5306782 - ORSgTETNOOT01607 258 0.0003 (1/2988) 0 * * Os_TE_275097 Chr5 5293701 5293700 - STOWAWAY51_OS 246 0.0003 (1/2985) 0 * * Os_TE_275073 Chr5 5281038 5281037 + SETARIA2 1142 0.0003 (1/2947) 0 * * Os_TE_275031 Chr5 5255919 5255920 + SC-8_LTR 4951 0.0003 (1/2974) 0 * Os_TE_275030 Os_TE_275030 Chr5 5255915 5255914 - SC-8_LTR 4951 0.0003 (1/2977) 0 * Os_TE_275031 Os_TE_275015 Chr5 5249723 5249724 - BUHUI 375 0.0003 (1/2972) 0 * * Os_TE_275013 Chr5 5240789 5240790 - COWARD 200 0.0003 (1/2985) 0 * Os_TE_275012 Os_TE_275012 Chr5 5240787 5240786 + COWARD-3 221 0.0003 (1/2987) 0 * Os_TE_275013 Os_TE_275010 Chr5 5239994 5239995 + ORSiTERTOOT00296 5553 0.0003 (1/2871) 0 * Os_TE_275009 Os_TE_275009 Chr5 5239990 5239989 - SC-3_LTR 5748 0.0004 (1/2849) 0 * Os_TE_275010 Os_TE_275003 Chr5 5236871 5236872 + STOWAWAY9_OS 235 0.0003 (1/2988) 0 * * Os_TE_275000 Chr5 5234879 5234880 + RIRE2_LTR 11306 0.0004 (1/2764) 0 * Os_TE_274999 Os_TE_274999 Chr5 5234875 5234874 - RIRE2_LTR 11306 0.0004 (1/2765) 0 * Os_TE_275000 Os_TE_274966 Chr5 5227450 5227451 - RETROSAT5_LTR 13878 0.0012 (3/2548) 0 * Os_TE_274965 Os_TE_274965 Chr5 5227446 5227445 + SZ-67LTR 1540 0.0012 (3/2542) 0 * Os_TE_274966 Os_TE_274944 Chr5 5222357 5222358 - ORSgTEMT00501035 149 0.0004 (1/2289) 0 * * Os_TE_274903 Chr5 5193777 5193778 + ORSgTETNOOT00531 254 0.0004 (1/2478) 0 * * Os_TE_274888 Chr5 5186033 5187676 - ENSPM4_OS 11610 0.8811 (2423/2750) 1 Intact * Os_TE_274874 Chr5 5181590 5181589 + ORSgTEMT01700513 151 0.0915 (252/2753) 0 * Os_TE_274873 Os_TE_274873 Chr5 5181589 5181590 - STOWAWAY1_OS 149 0.0910 (251/2757) 0 * Os_TE_274874 Os_TE_274871 Chr5 5181272 5181273 - ORSgTETNOOT00790 253 0.0929 (249/2679) 0 * * Os_TE_274844 Chr5 5165808 5165807 + RIRE2_LTR 11306 0.0004 (1/2645) 0 * * Os_TE_274838 Chr5 5163841 5163842 - SZ-22_LTR 4403 0.0805 (222/2757) 0 * Os_TE_274837 Os_TE_274837 Chr5 5163837 5163836 + ORSiTERTOOT00226 792 0.0807 (223/2764) 0 * Os_TE_274838 Os_TE_274836 Chr5 5163732 5163733 + RIREX_LTR 8828 0.0007 (2/2775) 0 * Os_TE_274835 Os_TE_274835 Chr5 5163728 5163727 - RIREX_LTR 8828 0.0007 (2/2772) 0 * Os_TE_274836 Os_TE_274834 Chr5 5163221 5163222 - MPING 430 0.0004 (1/2771) 0 * * Os_TE_274743 Chr5 5105753 5105752 - F524 291 0.0004 (1/2712) 0 * * Os_TE_274724 Chr5 5086371 5086370 - RETROSAT5_LTR 13878 0.0063 (18/2845) 0 * * Os_TE_274712 Chr5 5082089 5082088 - ORSgTEMT02400246 177 0.0004 (1/2767) 0 * * Os_TE_274710 Chr5 5081937 5081938 + DS-RICE4N 715 0.0004 (1/2754) 0 * * Os_TE_274706 Chr5 5080701 5080702 - RIREX_LTR 8828 0.0101 (28/2769) 0 * * Os_TE_274611 Chr5 5023177 5023176 - CASTAWAY 364 0.0570 (168/2949) 0 * * Os_TE_274604 Chr5 5022144 5022145 - ORSgTETNOOT01607 258 0.1559 (461/2957) 0 * * Os_TE_274598 Chr5 5021262 5021633 - OLO24 345 0.8482 (2514/2964) 1 Intact * Os_TE_274596 Chr5 5021030 5020896 - ORSgTEMT00500671 143 0.8519 (2520/2958) 1 Intact * Os_TE_274590 Chr5 5020211 5007322 + RETRO1_LTR 8314 0.8476 (2513/2965) 1 Intact Os_TE_274583 Os_TE_274583 Chr5 5007322 5020211 - RETRO1_LTR 8314 0.8463 (2517/2974) 1 Intact Os_TE_274590 Os_TE_274581 Chr5 5006554 5006321 + STOWAWAY51_OS 246 0.8513 (2514/2953) 1 Intact * Os_TE_274576 Chr5 5005191 5005192 + SNAP-OL3 189 0.0003 (1/2966) 0 * * Os_TE_274560 Chr5 5001470 5001471 + ORSiTERTOOT00291 11421 0.0013 (4/2981) 0 * Os_TE_274559 Os_TE_274559 Chr5 5001466 5001465 - ORSiTERTOOT00291 11421 0.0013 (4/2974) 0 * Os_TE_274560 Os_TE_274550 Chr5 4996237 4989556 + RIREX_LTR 8828 0.8915 (2663/2987) 1 Intact Os_TE_274547 Os_TE_274547 Chr5 4989556 4996237 - RIREX_LTR 8828 0.8934 (2673/2992) 1 Intact Os_TE_274550 Os_TE_274500 Chr5 4964127 4964128 - MPING 430 0.0003 (1/2993) 0 * Os_TE_274499 Os_TE_274499 Chr5 4964125 4964124 + MPING 430 0.0003 (1/2988) 0 * Os_TE_274500 Os_TE_274484 Chr5 4955816 4955815 + SZ-40LTR 2465 0.2349 (682/2903) 0 * * Os_TE_274483 Chr5 4955807 4954023 + ENSPM4_OS 11610 0.8710 (1991/2286) 1 Intact * Os_TE_274481 Chr5 4954013 4954014 - GYPSY-A_LTR 8951 0.2421 (724/2991) 0 * * Os_TE_274453 Chr5 4941366 4946630 + OSMAR1 5265 0.6597 (1844/2795) 1 Intact * Os_TE_274449 Chr5 4939626 4939627 + TWIFB1 3737 0.0013 (4/2993) 0 * Os_TE_274448 Os_TE_274448 Chr5 4939621 4939620 - TWIFB1 3737 0.0010 (3/2993) 0 * Os_TE_274449 Os_TE_274436 Chr5 4932902 4932903 + RETRO2A_LTR 12895 0.0004 (1/2326) 0 * * Os_TE_274418 Chr5 4924347 4924348 + ORSgTETNOOT00908 242 0.0009 (2/2251) 0 * * Os_TE_274417 Chr5 4923872 4923873 - ORSiTERTOOT00254 1927 0.0009 (2/2208) 0 * * Os_TE_274414 Chr5 4922051 4922052 + rn_179-105_LTR 4837 0.2651 (739/2788) 0 * Os_TE_274413 Os_TE_274413 Chr5 4922047 4922046 - rn_179-105_LTR 4837 0.2623 (731/2787) 0 * Os_TE_274414 Os_TE_274411 Chr5 4921554 4921555 + GAIJIN 147 0.2661 (730/2743) 0 * * Os_TE_274404 Chr5 4918257 4921147 + MDR3 6978 0.7693 (2071/2692) 1 Intact * Os_TE_274402 Chr5 4917293 4917294 + SC-8_LTR 4951 0.0004 (1/2736) 0 * Os_TE_274401 Os_TE_274401 Chr5 4917289 4917288 - SC-8_LTR 4951 0.0004 (1/2743) 0 * Os_TE_274402 Os_TE_274399 Chr5 4916420 4916419 - F524 291 0.0005 (1/2056) 0 * * Os_TE_274374 Chr5 4911439 4911440 + TELIA 141 0.0004 (1/2397) 0 * Os_TE_274373 Os_TE_274373 Chr5 4911431 4911430 - TELIA 141 0.0004 (1/2702) 0 * Os_TE_274374 Os_TE_274352 Chr5 4905738 4905739 + RETRO2_LTR 12874 0.2360 (706/2991) 0 * * Os_TE_274349 Chr5 4904550 4904303 - ORSgTEMT00900099 250 0.7519 (2082/2769) 1 Intact Os_TE_274347 Os_TE_274347 Chr5 4904301 4904548 + ORSgTEMT00901844 250 0.7511 (2079/2768) 1 Intact Os_TE_274349 Os_TE_274287 Chr5 4890310 4890311 - ORSgTEMT01400038 210 0.2337 (632/2704) 0 * * Os_TE_274267 Chr5 4875497 4875498 - ORSgTEMT02400179 221 0.2719 (745/2740) 0 * * Os_TE_274263 Chr5 4874944 4874943 - ORSgTEMT01700299 212 0.3423 (1008/2945) 0 * Os_TE_274262 Os_TE_274262 Chr5 4874943 4874944 + STOWAWAY1_OS 149 0.3143 (893/2841) 0 * Os_TE_274263 Os_TE_274254 Chr5 4873747 4873746 - ORSgTEMT01600639 228 0.3354 (992/2958) 0 * * Os_TE_274249 Chr5 4872639 4872640 - RETRO2_LTR 12874 0.0229 (68/2963) 0 * Os_TE_274248 Os_TE_274248 Chr5 4872635 4872634 + RETRO2A_LTR 12895 0.0216 (64/2957) 0 * Os_TE_274249 Os_TE_274239 Chr5 4871504 4871265 + ORSgTEMT01602181 239 0.6736 (2002/2972) 1 Intact * Os_TE_274233 Chr5 4870102 4869767 + ORSgTEMT00101674 340 0.6710 (2001/2982) 1 Intact Os_TE_274227 Os_TE_274227 Chr5 4869767 4870099 + NDNA1TNA_OS 334 0.6756 (2022/2993) 1 Intact Os_TE_274233 Os_TE_274226 Chr5 4869670 4869531 + ORSgTEMT00502094 140 0.6757 (2025/2997) 1 Intact Os_TE_274223 Os_TE_274223 Chr5 4869528 4869667 - ORSgTEMT00501447 126 0.6746 (2021/2996) 1 Intact Os_TE_274226 Os_TE_274218 Chr5 4867545 4867544 - ORSgTEMT01700357 152 0.0020 (4/1970) 0 * * Os_TE_274201 Chr5 4858598 4858597 + ORSiTERTOOT00296 5553 0.0003 (1/2989) 0 * * Os_TE_274198 Chr5 4854138 4853727 + ORSgTEMT00300063 413 0.6696 (1994/2978) 1 Intact Os_TE_274194 Os_TE_274194 Chr5 4853721 4854136 + ORSgTEMT00300069 394 0.6747 (2016/2988) 1 Intact Os_TE_274198 Os_TE_274190 Chr5 4852514 4852515 - TRUNCATOR2_LTR 2904 0.0003 (1/2968) 0 * * Os_TE_274184 Chr5 4850292 4850291 - CLOUD-2 711 0.0004 (1/2679) 0 * * Os_TE_274164 Chr5 4847718 4847719 + ORSgTEMT01601122 212 0.2725 (721/2646) 0 * * Os_TE_274139 Chr5 4844104 4844103 - COWARD 200 0.3363 (989/2941) 0 * * Os_TE_274138 Chr5 4843649 4843650 - MPING 430 0.0003 (1/2992) 0 * Os_TE_274137 Os_TE_274137 Chr5 4843647 4843646 + MPING 430 0.0003 (1/2992) 0 * Os_TE_274138 Os_TE_274135 Chr5 4842813 4842812 + ORSiTERTOOT00226 792 0.0004 (1/2733) 0 * * Os_TE_274131 Chr5 4842210 4841550 - ORSgTEMT00600085 364 0.6787 (2013/2966) 1 Intact * Os_TE_274118 Chr5 4840862 4840863 - ORSgTEMT00502171 134 0.0025 (5/1970) 0 * * Os_TE_274116 Chr5 4840843 4840703 + ORSgTEMT00500201 140 0.7976 (1958/2455) 1 Intact * Os_TE_274101 Chr5 4831859 4831621 + ORSgTEMT01601934 207 0.6822 (1979/2901) 1 Intact Os_TE_274099 Os_TE_274099 Chr5 4831620 4831859 - TREP215 239 0.6779 (1970/2906) 1 Intact Os_TE_274101 Os_TE_274097 Chr5 4831574 4831573 + ORSiTERT00100063 7723 0.3399 (1003/2951) 0 * * Os_TE_274087 Chr5 4828438 4828439 - LINE-6_OS 4886 0.0007 (2/2997) 0 * * Os_TE_274067 Chr5 4824415 4824414 - STOWAWAY1_OS 149 0.0003 (1/2930) 0 * * Os_TE_274051 Chr5 4821392 4821393 + INDITTO 263 0.0357 (106/2970) 0 * Os_TE_274050 Os_TE_274050 Chr5 4821390 4821389 + ORSgTETNOOT02316 263 0.0353 (105/2971) 0 * Os_TE_274051 Os_TE_274020 Chr5 4816067 4816068 + RETRO2_LTR 12874 0.0027 (8/2994) 0 * Os_TE_274019 Os_TE_274019 Chr5 4816063 4816062 - RETRO2_LTR 12874 0.0030 (9/2997) 0 * Os_TE_274020 Os_TE_274017 Chr5 4815478 4815479 + TWIF 586 0.0003 (1/2992) 0 * Os_TE_274016 Os_TE_274016 Chr5 4815471 4815470 - ORSiTETNOOT00134 607 0.0003 (1/2995) 0 * Os_TE_274017 Os_TE_274008 Chr5 4812218 4812217 - RIRE5-LTR_OS 6427 0.0010 (3/2966) 0 * * Os_TE_273998 Chr5 4809985 4809986 + COPIA2-LTR_OS 6433 0.0003 (1/2919) 0 * Os_TE_273997 Os_TE_273997 Chr5 4809981 4809980 - COPIA2-LTR_OS 6433 0.0004 (1/2839) 0 * Os_TE_273998 Os_TE_273992 Chr5 4808792 4808791 - ENSPM4_OS 11610 0.0415 (120/2890) 0 * * Os_TE_273988 Chr5 4807888 4807889 - F524 291 0.0003 (1/2981) 0 * * Os_TE_273979 Chr5 4801167 4801168 + ORSgTEMT00500560 148 0.0003 (1/2991) 0 * * Os_TE_273975 Chr5 4797729 4797730 - RIRE5-LTR_OS 6427 0.0004 (1/2814) 0 * * Os_TE_273967 Chr5 4796820 4796821 - ORSgTEMT00901528 250 0.0003 (1/2909) 0 * * Os_TE_273965 Chr5 4796591 4796590 + RIRE5-LTR_OS 6427 0.0014 (4/2860) 0 * * Os_TE_273959 Chr5 4795919 4795918 + CACTA-D 1038 0.2350 (655/2787) 0 * Os_TE_273958 Os_TE_273958 Chr5 4795918 4795919 - CACTA-I 1124 0.2789 (815/2922) 0 * Os_TE_273959 Os_TE_273943 Chr5 4790299 4790300 + RETRO1_LTR 8314 0.0003 (1/2994) 0 * Os_TE_273942 Os_TE_273942 Chr5 4790295 4790294 - RETRO2_LTR 12874 0.0003 (1/2992) 0 * Os_TE_273943 Os_TE_273929 Chr5 4784403 4784404 - COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_273928 Os_TE_273928 Chr5 4784399 4784398 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_273929 Os_TE_273918 Chr5 4778676 4778675 + ORSgTETNOOT02179 137 0.0003 (1/2880) 0 * * Os_TE_273913 Chr5 4777536 4777537 - NDNA1TNA_OS 334 0.0010 (3/2986) 0 * Os_TE_273912 Os_TE_273912 Chr5 4777535 4777534 + NDNA1TNA_OS 334 0.0010 (3/2977) 0 * Os_TE_273913 Os_TE_273886 Chr5 4770650 4770649 + ORSgTETN00200005 1121 0.0003 (1/2995) 0 * Os_TE_273885 Os_TE_273885 Chr5 4770645 4770646 + CACTA-B 1103 0.0003 (1/2992) 0 * Os_TE_273886 Os_TE_273867 Chr5 4768114 4768115 - COPIA2-LTR_OS 6433 0.0100 (30/2994) 0 * Os_TE_273866 Os_TE_273866 Chr5 4768110 4768109 + COPIA2-LTR_OS 6433 0.0097 (29/2996) 0 * Os_TE_273867 Os_TE_273840 Chr5 4748799 4748800 + SZ-9LTR 965 0.0585 (172/2940) 0 * * Os_TE_273782 Chr5 4731799 4731800 - RIREX_LTR 8828 0.0003 (1/2967) 0 * Os_TE_273781 Os_TE_273781 Chr5 4731795 4731794 + RIREX_LTR 8828 0.0003 (1/2966) 0 * Os_TE_273782 Os_TE_273760 Chr5 4725103 4725104 - RIREX_LTR 8828 0.0003 (1/2982) 0 * Os_TE_273759 Os_TE_273759 Chr5 4725099 4725098 + RIREX_LTR 8828 0.0003 (1/2985) 0 * Os_TE_273760 Os_TE_273744 Chr5 4720401 4720400 - ORSgTEMT00900099 250 0.0003 (1/2990) 0 * * Os_TE_273743 Chr5 4720368 4720367 - ORSgTEMT00900099 250 0.0234 (70/2990) 0 * * Os_TE_273734 Chr5 4718062 4718063 - ORSgTEMT03000017 382 0.0227 (68/2995) 0 * Os_TE_273733 Os_TE_273733 Chr5 4718055 4718054 - ORSgTEMT03000024 384 0.0203 (60/2960) 0 * Os_TE_273734 Os_TE_273729 Chr5 4716735 4716736 - COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_273728 Os_TE_273728 Chr5 4716731 4716730 + COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_273729 Os_TE_273720 Chr5 4714914 4714915 - COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_273719 Os_TE_273719 Chr5 4714910 4714909 + COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_273720 Os_TE_273716 Chr5 4712619 4712007 - DS-RICE2N 613 0.3642 (1081/2968) 1 Intact * Os_TE_273714 Chr5 4710204 4710203 + COPI2_LTR 4733 0.0004 (1/2777) 0 * * Os_TE_273709 Chr5 4709444 4709445 + STOWAWAY21_OS 243 0.0448 (64/1430) 0 * * Os_TE_273694 Chr5 4703148 4703147 + RETROSAT2LTR 12796 0.0014 (4/2936) 0 * * Os_TE_273687 Chr5 4701363 4701364 + OSTE33 1012 0.6676 (1649/2470) 0 * * Os_TE_273663 Chr5 4691319 4691320 + MPING 430 0.0013 (4/2966) 0 * * Os_TE_273645 Chr5 4687829 4687828 + MUDRN5_OS 374 0.0164 (48/2924) 0 * * Os_TE_273644 Chr5 4687627 4687628 + ORSgTEMT00500560 148 0.0239 (71/2965) 0 * Os_TE_273643 Os_TE_273643 Chr5 4687626 4687625 - UNIQUE 158 0.0231 (69/2987) 0 * Os_TE_273644 Os_TE_273642 Chr5 4687430 4687431 - RIREX_LTR 8828 0.0488 (146/2993) 0 * Os_TE_273641 Os_TE_273641 Chr5 4687426 4687425 + RIREX_LTR 8828 0.0488 (143/2932) 0 * Os_TE_273642 Os_TE_273640 Chr5 4686691 4686692 - TYPEM 227 0.0003 (1/2860) 0 * Os_TE_273639 Os_TE_273639 Chr5 4686690 4686689 - ORSgTEMT02400179 221 0.0004 (1/2844) 0 * Os_TE_273640 Os_TE_273629 Chr5 4684643 4684642 - ORSgTEMT01601208 238 0.0003 (1/2942) 0 * * Os_TE_273624 Chr5 4681599 4681600 + COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_273623 Os_TE_273623 Chr5 4681595 4681594 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_273624 Os_TE_273604 Chr5 4679441 4679442 + EXPLORER 210 0.0003 (1/2890) 0 * * Os_TE_273602 Chr5 4679214 4679213 + OSTE18 129 0.0003 (1/2981) 0 * * Os_TE_273592 Chr5 4676236 4676237 - ORSiTERTOOT00074 4935 0.0003 (1/2983) 0 * Os_TE_273591 Os_TE_273591 Chr5 4676232 4676231 + ORSiTERTOOT00074 4935 0.0003 (1/2926) 0 * Os_TE_273592 Os_TE_273579 Chr5 4672399 4672400 - ORSiTETNOOT00134 607 0.0003 (1/2874) 0 * * Os_TE_273563 Chr5 4666236 4666235 + ORSgTEMT01601591 242 0.0003 (1/2986) 0 * * Os_TE_273539 Chr5 4658580 4658581 + ORSgTEMT00600272 361 0.5905 (1745/2955) 0 * Os_TE_273538 Os_TE_273538 Chr5 4658578 4658577 - ORSgTEMT00600085 364 0.5849 (1674/2862) 0 * Os_TE_273539 Os_TE_273532 Chr5 4656734 4656733 - ORSgTEMT00501356 145 0.0003 (1/2974) 0 * * Os_TE_273516 Chr5 4655034 4655035 - F804 170 0.0007 (2/2668) 0 * * Os_TE_273500 Chr5 4652133 4652134 - COPIA2-LTR_OS 6433 0.0027 (8/2949) 0 * Os_TE_273499 Os_TE_273499 Chr5 4652129 4652128 + COPIA2-LTR_OS 6433 0.0024 (7/2953) 0 * Os_TE_273500 Os_TE_273498 Chr5 4652066 4652065 + ORSgTEMT01701547 160 0.0232 (69/2971) 0 * Os_TE_273497 Os_TE_273497 Chr5 4652065 4652066 - STOWAWAY1_OS 149 0.0229 (68/2971) 0 * Os_TE_273498 Os_TE_273471 Chr5 4646753 4646754 - SZ-22_LTR 4403 0.0003 (1/2999) 0 * Os_TE_273470 Os_TE_273470 Chr5 4646749 4646748 + ORSiTERTOOT00226 792 0.0003 (1/2942) 0 * Os_TE_273471 Os_TE_273460 Chr5 4635210 4635211 - TRUNCATOR2_LTR 2904 0.0003 (1/2975) 0 * Os_TE_273459 Os_TE_273459 Chr5 4635206 4635205 + ORSiCMCM00100019 2717 0.0003 (1/2985) 0 * Os_TE_273460 Os_TE_273453 Chr5 4634255 4634256 - ORSgTEMT01700216 124 0.0231 (69/2990) 0 * * Os_TE_273409 Chr5 4620525 4620524 + ORSgTEMT00100272 356 0.0004 (1/2732) 0 * Os_TE_273408 Os_TE_273408 Chr5 4620524 4620525 + NDNA1TNA_OS 334 0.0004 (1/2734) 0 * Os_TE_273409 Os_TE_273406 Chr5 4618921 4618920 - ORSgTEMT01601366 243 0.7346 (2187/2977) 0 * * Os_TE_273388 Chr5 4613052 4613051 + HELITRON7_OS 10153 0.0010 (3/2984) 0 * * Os_TE_273367 Chr5 4604215 4604216 - ORSiTERTOOT00402 2660 0.0020 (6/2966) 0 * Os_TE_273366 Os_TE_273366 Chr5 4604211 4604210 + ORSiTERTOOT00402 2660 0.0020 (6/2942) 0 * Os_TE_273367 Os_TE_273333 Chr5 4597882 4597883 - CLOUD-6 508 0.0010 (3/2895) 0 * Os_TE_273332 Os_TE_273332 Chr5 4597874 4597873 - CLOUD-6 508 0.0011 (3/2825) 0 * Os_TE_273333 Os_TE_273326 Chr5 4596737 4596736 - ORSgTETN00200001 10994 0.0100 (29/2911) 0 * * Os_TE_273316 Chr5 4592472 4592473 - ORSiTETNOOT00216 3569 0.0054 (16/2989) 0 * Os_TE_273315 Os_TE_273315 Chr5 4592465 4592464 + TWIFBIG 3567 0.0050 (15/2986) 0 * Os_TE_273316 Os_TE_273293 Chr5 4576748 4576749 - TEMPINDAS 4259 0.0054 (16/2978) 0 * * Os_TE_273262 Chr5 4559116 4559117 + CRATA 4786 0.0017 (4/2421) 0 * Os_TE_273261 Os_TE_273261 Chr5 4559109 4559108 - CRATA 4786 0.0013 (4/2989) 0 * Os_TE_273262 Os_TE_273247 Chr5 4555299 4555300 + SZ-28LTR 262 0.0075 (21/2812) 0 * * Os_TE_273245 Chr5 4554902 4554901 + RIREX_LTR 8828 0.0014 (4/2764) 0 * * Os_TE_273220 Chr5 4544379 4544378 - ORSiCMCM00100013 9728 0.0018 (5/2815) 0 * * Os_TE_273130 Chr5 4504050 4504051 - RIRE3_LTR 12054 0.0100 (29/2910) 0 * * Os_TE_273122 Chr5 4502378 4502379 - SZ-62LTR 3649 0.6105 (1779/2914) 0 * * Os_TE_273120 Chr5 4502345 4502346 - RIREX_LTR 8828 0.0014 (4/2916) 0 * Os_TE_273119 Os_TE_273119 Chr5 4502341 4502340 + RIREX_LTR 8828 0.0014 (4/2875) 0 * Os_TE_273120 Os_TE_273095 Chr5 4498352 4498353 + TRUNCATOR 2918 0.0115 (32/2771) 0 * * Os_TE_273055 Chr5 4483797 4483798 - ORSgTEMT00501259 146 0.0003 (1/2910) 0 * * Os_TE_272868 Chr5 4411694 4411695 + COPI2_LTR 4733 0.0017 (5/2927) 0 * * Os_TE_272854 Chr5 4407417 4407418 + ORSgTETNOOT00908 242 0.0632 (188/2977) 0 * Os_TE_272853 Os_TE_272853 Chr5 4407409 4407408 + ORSgTETNOOT01219 231 0.0622 (185/2974) 0 * Os_TE_272854 Os_TE_272852 Chr5 4406556 4406555 - ORSgTERT00200842 1080 0.0003 (1/2941) 0 * * Os_TE_272834 Chr5 4401944 4401945 - ORSiTETNOOT00216 3569 0.5746 (1633/2842) 0 * Os_TE_272833 Os_TE_272833 Chr5 4401937 4401936 + TWIFBIG 3567 0.5910 (1727/2922) 0 * Os_TE_272834 Os_TE_272819 Chr5 4394767 4394768 + ORSiTERTOOT00226 792 0.0012 (1/847) 0 * * Os_TE_272729 Chr5 4345502 4347494 - RIRE3_LTR 12054 0.3394 (1018/2999) 1 Solo_LTR * Os_TE_272727 Chr5 4345094 4345095 - MuDR4_OS 7610 0.6059 (1813/2992) 0 * * Os_TE_272723 Chr5 4344571 4344572 - SZ-22_LTR 4403 0.0077 (23/2980) 0 * Os_TE_272722 Os_TE_272722 Chr5 4344567 4344566 + ORSiTERTOOT00226 792 0.0077 (23/2979) 0 * Os_TE_272723 Os_TE_272718 Chr5 4344209 4333072 - RIRE3A_LTR 10580 0.2519 (726/2882) 1 Intact Os_TE_272712 Os_TE_272712 Chr5 4333072 4344209 + RIRE3A_LTR 10580 0.1707 (450/2636) 1 Intact Os_TE_272718 Os_TE_272698 Chr5 4331481 4331482 + TWIF 586 0.0003 (1/2872) 0 * Os_TE_272697 Os_TE_272697 Chr5 4331474 4331473 - ORSiTETNOOT00134 607 0.0003 (1/2866) 0 * Os_TE_272698 Os_TE_272679 Chr5 4327429 4327430 + TWIFB1 3737 0.0004 (1/2574) 0 * * Os_TE_272678 Chr5 4327415 4327416 + ORSgTETNOOT01686 252 0.0072 (19/2635) 0 * Os_TE_272677 Os_TE_272677 Chr5 4327411 4327410 + ORSgTETNOOT01531 255 0.0065 (17/2634) 0 * Os_TE_272678 Os_TE_272634 Chr5 4306888 4306887 - ORSgTETNOOT00361 249 0.0004 (1/2830) 0 * * Os_TE_272624 Chr5 4297971 4297972 + TRUNCATOR 2918 0.0003 (1/2992) 0 * * Os_TE_272596 Chr5 4281755 4281472 + F770 284 0.6445 (1905/2956) 1 Intact Os_TE_272595 Os_TE_272595 Chr5 4281472 4281755 - F770 284 0.6489 (1931/2976) 1 Intact Os_TE_272596 Os_TE_272584 Chr5 4278769 4275527 - RETROSAT2LTR 12796 0.3416 (981/2872) 1 Solo_LTR * Os_TE_272569 Chr5 4272502 4272501 - ORSgTEMT01601834 234 0.0003 (1/2946) 0 * * Os_TE_272568 Chr5 4272155 4272154 - ORSgTEMT01601768 238 0.2385 (706/2960) 0 * * Os_TE_272567 Chr5 4272152 4272153 - ORSgTEMT01601432 239 0.2390 (707/2958) 0 * Os_TE_272566 Os_TE_272566 Chr5 4272149 4272148 + ORSgTEMT01600288 233 0.2378 (702/2952) 0 * Os_TE_272567 Os_TE_272553 Chr5 4266390 4266391 + COPI2_LTR 4733 0.0027 (8/2964) 0 * * Os_TE_272547 Chr5 4265499 4265500 - FOCUS 257 0.0027 (8/2979) 0 * * Os_TE_272540 Chr5 4264049 4264048 + ORSgTEMT01601591 242 0.0003 (1/2961) 0 * Os_TE_272539 Os_TE_272539 Chr5 4264043 4264044 + STOWAWAY51_OS 246 0.0003 (1/2964) 0 * Os_TE_272540 Os_TE_272538 Chr5 4263510 4263511 + ORSgTEMT00501267 147 0.0644 (192/2981) 0 * Os_TE_272537 Os_TE_272537 Chr5 4263509 4263508 + ORSgTEMT00500989 146 0.0603 (179/2967) 0 * Os_TE_272538 Os_TE_272535 Chr5 4262318 4262319 - SZ-55_LTR 10318 0.0011 (3/2751) 0 * * Os_TE_272496 Chr5 4249078 4249077 + ORSgTEMT01601591 242 0.0004 (1/2791) 0 * Os_TE_272495 Os_TE_272495 Chr5 4249075 4249076 + ORSgTEMT01601591 242 0.0004 (1/2796) 0 * Os_TE_272496 Os_TE_272492 Chr5 4248958 4248959 + NDNA1TNA_OS 334 0.0627 (175/2792) 0 * Os_TE_272491 Os_TE_272491 Chr5 4248957 4248956 + ORSgTEMT00100531 325 0.0622 (174/2796) 0 * Os_TE_272492 Os_TE_272484 Chr5 4248554 4248555 + TELIA 141 0.0014 (4/2810) 0 * Os_TE_272483 Os_TE_272483 Chr5 4248546 4248545 - TELIA 141 0.0014 (4/2810) 0 * Os_TE_272484 Os_TE_272445 Chr5 4237042 4237041 - COWARD 200 0.0640 (191/2986) 0 * * Os_TE_272411 Chr5 4227192 4227191 + STOWAWAY51_OS 246 0.0575 (166/2886) 0 * Os_TE_272410 Os_TE_272410 Chr5 4227190 4227191 - STOWAWAY51_OS 246 0.0634 (184/2901) 0 * Os_TE_272411 Os_TE_272406 Chr5 4226741 4226742 - ORSgTEMT01400014 209 0.0582 (172/2955) 0 * * Os_TE_272381 Chr5 4212684 4212685 + TOS17LTR 138 0.0017 (5/2998) 0 * Os_TE_272380 Os_TE_272380 Chr5 4212680 4212679 - TOS17LTR 138 0.0017 (5/2996) 0 * Os_TE_272381 Os_TE_272368 Chr5 4208678 4208679 + MERMITE18E 1528 0.0014 (4/2925) 0 * Os_TE_272367 Os_TE_272367 Chr5 4208674 4208673 + MERMITE18E 1528 0.0010 (3/2914) 0 * Os_TE_272368 Os_TE_272366 Chr5 4208591 4208592 - ORSgTEMT02400179 221 0.0076 (22/2887) 0 * Os_TE_272365 Os_TE_272365 Chr5 4208590 4208589 - TYPEM 227 0.0079 (23/2909) 0 * Os_TE_272366 Os_TE_272328 Chr5 4200493 4200494 - ORSgTEMT02400179 221 0.0017 (5/2946) 0 * Os_TE_272327 Os_TE_272327 Chr5 4200492 4200491 - TYPEM 227 0.0020 (6/2940) 0 * Os_TE_272328 Os_TE_272318 Chr5 4194935 4194934 - STOWAWAY51_OS 246 0.0004 (1/2617) 0 * * Os_TE_272309 Chr5 4183413 4183412 + SETARIA2 1142 0.0108 (29/2677) 0 * * Os_TE_272297 Chr5 4181132 4181133 + ORSgTETNOOT00908 242 0.0655 (193/2945) 0 * Os_TE_272296 Os_TE_272296 Chr5 4181130 4181129 + ORSgTETNOOT02019 240 0.0639 (188/2941) 0 * Os_TE_272297 Os_TE_272288 Chr5 4178245 4178244 + ORSiTERTOOT00392 5205 0.0004 (1/2856) 0 * * Os_TE_272285 Chr5 4177977 4177976 + MERMITEB 1610 0.0010 (3/2939) 0 * * Os_TE_272275 Chr5 4169543 4169544 + SC-8_LTR 4951 0.0003 (1/2977) 0 * Os_TE_272274 Os_TE_272274 Chr5 4169539 4169538 - SC-8_LTR 4951 0.0003 (1/2976) 0 * Os_TE_272275 Os_TE_272268 Chr5 4163697 4163696 + ORSgTEMT01701591 154 0.0003 (1/2988) 0 * * Os_TE_272265 Chr5 4160753 4160754 + TWIFBIG 3567 0.0090 (27/2992) 0 * Os_TE_272264 Os_TE_272264 Chr5 4160746 4160745 - ORSiTETNOOT00199 3501 0.0100 (30/2994) 0 * Os_TE_272265 Os_TE_272260 Chr5 4158627 4158626 + STOWAWAY51_OS 246 0.3393 (961/2832) 0 * Os_TE_272259 Os_TE_272259 Chr5 4158621 4158622 - STOWAWAY51_OS 246 0.3335 (936/2807) 0 * Os_TE_272260 Os_TE_272254 Chr5 4157160 4156818 - TYPEH 309 0.6873 (1969/2865) 1 Intact Os_TE_272252 Os_TE_272252 Chr5 4156815 4157163 - ORSgTEMT01900024 348 0.7598 (1964/2585) 1 Intact Os_TE_272254 Os_TE_272236 Chr5 4151859 4152298 - ORSgTEMT01800105 452 0.6812 (1985/2914) 1 Intact * Os_TE_272230 Chr5 4149296 4149297 - TELIA 141 0.0146 (43/2952) 0 * Os_TE_272229 Os_TE_272229 Chr5 4149288 4149287 + TELIA 141 0.0146 (43/2946) 0 * Os_TE_272230 Os_TE_272222 Chr5 4145475 4145474 + ORSgTEMT00500512 153 0.1158 (343/2961) 0 * * Os_TE_272216 Chr5 4141533 4141234 + ORSgTEMT01900027 302 0.8617 (2393/2777) 1 Intact * Os_TE_272197 Chr5 4135275 4135276 + INDITTO 263 0.0069 (20/2879) 0 * Os_TE_272196 Os_TE_272196 Chr5 4135273 4135272 - INDITTO 263 0.0079 (23/2896) 0 * Os_TE_272197 Os_TE_272176 Chr5 4124110 4124111 - INDITTO 263 0.0003 (1/2982) 0 * Os_TE_272175 Os_TE_272175 Chr5 4124108 4124107 + INDITTO 263 0.0003 (1/2985) 0 * Os_TE_272176 Os_TE_272174 Chr5 4123950 4123951 + COPIA2-LTR_OS 6433 0.0003 (1/2909) 0 * Os_TE_272173 Os_TE_272173 Chr5 4123946 4123945 - COPIA2-LTR_OS 6433 0.0007 (2/2894) 0 * Os_TE_272174 Os_TE_272160 Chr5 4116335 4116334 + COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * * Os_TE_272135 Chr5 4111732 4111733 + ORSgTEMT00901844 250 0.0003 (1/2977) 0 * * Os_TE_272127 Chr5 4110346 4110345 + F770 284 0.4056 (1208/2978) 0 * * Os_TE_272120 Chr5 4102932 4102933 + SPMLIKE 10989 0.0020 (6/2992) 0 * * Os_TE_272118 Chr5 4101979 4101980 - ORSgTEMT06000292 191 0.0007 (1/1446) 0 * * Os_TE_272117 Chr5 4101394 4101393 + STOWAWAY51_OS 246 0.4789 (1259/2629) 0 * * Os_TE_272114 Chr5 4099695 4099696 - SC-3_LTR 5748 0.0013 (4/2993) 0 * Os_TE_272113 Os_TE_272113 Chr5 4099691 4099690 + ORSiTERTOOT00296 5553 0.0013 (4/2995) 0 * Os_TE_272114 Os_TE_272094 Chr5 4094650 4094861 + ORSgTEMT01601122 212 0.3474 (1035/2979) 1 Intact * Os_TE_272081 Chr5 4089141 4089142 - ORSgTERT00201216 11284 0.0081 (23/2824) 0 * * Os_TE_272077 Chr5 4085802 4085801 - RIRE3_LTR 12054 0.0011 (3/2633) 0 * * Os_TE_272062 Chr5 4077934 4077933 + SZ-14LTR 1193 0.0004 (1/2397) 0 * * Os_TE_272053 Chr5 4075868 4075869 - STOWAWAY51_OS 246 0.2359 (346/1467) 0 * * Os_TE_272049 Chr5 4075457 4075697 + ORSgTEMT01601122 212 0.4389 (962/2192) 1 Intact * Os_TE_271971 Chr5 4046745 4046746 - COPIA2-LTR_OS 6433 0.5065 (1209/2387) 0 * * Os_TE_271968 Chr5 4046092 4046093 - COPIA2-LTR_OS 6433 0.0025 (6/2374) 0 * Os_TE_271967 Os_TE_271967 Chr5 4046088 4046087 + COPIA2-LTR_OS 6433 0.0025 (6/2373) 0 * Os_TE_271968 Os_TE_271966 Chr5 4045953 4045954 - RIRE2_LTR 11306 0.0265 (63/2374) 0 * * Os_TE_271962 Chr5 4045075 4033780 - RIRE2_LTR 11306 0.4609 (1044/2265) 1 Intact Os_TE_271954 Os_TE_271954 Chr5 4033779 4045075 + RIRE2_LTR 11306 0.4676 (1068/2284) 1 Intact Os_TE_271962 Os_TE_271952 Chr5 4033219 4033220 - ENSPM5_OS 9581 0.0258 (61/2362) 0 * Os_TE_271951 Os_TE_271951 Chr5 4033217 4033216 + ENSPM6_OS 9815 0.0245 (58/2369) 0 * Os_TE_271952 Os_TE_271920 Chr5 3988451 3988452 + RIREX_LTR 8828 0.4114 (1201/2919) 0 * Os_TE_271919 Os_TE_271919 Chr5 3988447 3988446 - RIREX_LTR 8828 0.4167 (1211/2906) 0 * Os_TE_271920 Os_TE_271917 Chr5 3986702 3986703 + ENSPM3_OS 10837 0.0856 (244/2849) 0 * * Os_TE_271913 Chr5 3985266 3984323 + JOUZHEN 596 0.7692 (2253/2929) 1 Intact * Os_TE_271875 Chr5 3960121 3964126 + SZ-67LTR 1540 0.3667 (1067/2910) 1 Intact * Os_TE_271860 Chr5 3931925 3895082 + RETRO2_LTR 12874 0.3357 (954/2842) 1 Intact * Os_TE_271824 Chr5 3893946 3893947 + ENSPM4_OS 11610 0.0013 (4/2993) 0 * Os_TE_271823 Os_TE_271823 Chr5 3893945 3893944 - ENSPM4_OS 11610 0.0013 (4/2990) 0 * Os_TE_271824 Os_TE_271821 Chr5 3892707 3892706 + TRUNCATOR 2918 0.0210 (63/2995) 0 * Os_TE_271820 Os_TE_271820 Chr5 3892706 3892707 - TRUNCATOR 2918 0.0212 (62/2926) 0 * Os_TE_271821 Os_TE_271777 Chr5 3872181 3872182 + ORSgTEMT01601122 212 0.0014 (4/2946) 0 * * Os_TE_271771 Chr5 3871334 3871335 + RIREX_LTR 8828 0.0003 (1/2926) 0 * * Os_TE_271768 Chr5 3870825 3870826 + INDITTO 263 0.0992 (294/2963) 0 * Os_TE_271767 Os_TE_271767 Chr5 3870823 3870822 + ORSgTETNOOT01690 244 0.0943 (279/2958) 0 * Os_TE_271768 Os_TE_271763 Chr5 3869663 3869662 + ORSgTETNOOT01930 140 0.0004 (1/2818) 0 * * Os_TE_271758 Chr5 3867329 3867330 - ORSgTERT00100663 207 0.0004 (1/2668) 0 * * Os_TE_271755 Chr5 3867095 3860749 + OSTONOR1_LTR 6440 0.3586 (1069/2981) 1 Intact * Os_TE_271749 Chr5 3856193 3856194 - COPIA2-LTR_OS 6433 0.0010 (3/2984) 0 * Os_TE_271748 Os_TE_271748 Chr5 3856189 3856188 + COPIA2-LTR_OS 6433 0.0010 (3/2985) 0 * Os_TE_271749 Os_TE_271723 Chr5 3850427 3850428 + SZ-62LTR 3649 0.0736 (217/2948) 0 * Os_TE_271722 Os_TE_271722 Chr5 3850423 3850422 - SZ-62LTR 3649 0.0720 (212/2945) 0 * Os_TE_271723 Os_TE_271714 Chr5 3849221 3849222 - DITAILA 257 0.0213 (63/2963) 0 * * Os_TE_271683 Chr5 3832156 3832157 + SPMLIKE 10989 0.0017 (5/2976) 0 * Os_TE_271682 Os_TE_271682 Chr5 3832154 3832153 - ORSgTETN00200001 10994 0.0007 (2/2973) 0 * Os_TE_271683 Os_TE_271681 Chr5 3832065 3832064 + STOWAWAY51_OS 246 0.0593 (175/2949) 0 * Os_TE_271680 Os_TE_271680 Chr5 3832059 3832060 + ORSgTEMT01601591 242 0.0598 (177/2958) 0 * Os_TE_271681 Os_TE_271678 Chr5 3831543 3831544 + STOWAWAY21_OS 243 0.0003 (1/2958) 0 * * Os_TE_271677 Chr5 3831264 3831263 - ORSgTEMT00901723 248 0.0003 (1/2920) 0 * * Os_TE_271646 Chr5 3823574 3823575 + STOWAWAY11_OS 292 0.1223 (357/2918) 0 * Os_TE_271645 Os_TE_271645 Chr5 3823573 3823572 - STOWAWAY11_OS 292 0.1239 (361/2914) 0 * Os_TE_271646 Os_TE_271627 Chr5 3819942 3819943 - MUDRN1_OS 764 0.0003 (1/2929) 0 * Os_TE_271626 Os_TE_271626 Chr5 3819934 3819933 + MUDRN1_OS 764 0.0003 (1/2932) 0 * Os_TE_271627 Os_TE_271623 Chr5 3813046 3813047 - ORSgTETNOOT00544 147 0.0003 (1/2996) 0 * Os_TE_271622 Os_TE_271622 Chr5 3813044 3813043 + ORSgTETNOOT01930 140 0.0003 (1/2996) 0 * Os_TE_271623 Os_TE_271614 Chr5 3811669 3811668 - ORSgTEMT00600085 364 0.0017 (5/2981) 0 * * Os_TE_271581 Chr5 3798595 3798596 - ORSgTETN00200001 10994 0.0003 (1/2994) 0 * Os_TE_271580 Os_TE_271580 Chr5 3798593 3798592 + CACTA-I 1124 0.0003 (1/2991) 0 * Os_TE_271581 Os_TE_271579 Chr5 3798245 3791167 + RIRE5-LTR_OS 6427 0.3631 (1087/2994) 1 Intact Os_TE_271577 Os_TE_271577 Chr5 3791166 3797337 - RIRE5-LTR_OS 6427 0.3645 (1092/2996) 1 Intact Os_TE_271579 Os_TE_271576 Chr5 3791074 3791075 + COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_271575 Os_TE_271575 Chr5 3791070 3791069 - COPI2_LTR 4733 0.0003 (1/2930) 0 * Os_TE_271576 Os_TE_271574 Chr5 3790344 3790343 + ORSgTETNOOT00908 242 0.0675 (199/2947) 0 * * Os_TE_271566 Chr5 3789332 3789331 + ORSgTETNOOT00908 242 0.0003 (1/2979) 0 * * Os_TE_271564 Chr5 3789005 3789006 - ORSiTERTOOT00329 5144 0.0157 (47/2987) 0 * Os_TE_271563 Os_TE_271563 Chr5 3788998 3788997 + ORSiTERTOOT00329 5144 0.0151 (45/2985) 0 * Os_TE_271564 Os_TE_271561 Chr5 3788578 3788579 - COPIA2-LTR_OS 6433 0.0003 (1/2954) 0 * Os_TE_271560 Os_TE_271560 Chr5 3788574 3788573 + COPIA2-LTR_OS 6433 0.0003 (1/2953) 0 * Os_TE_271561 Os_TE_271558 Chr5 3786658 3786659 - SZ-55_LTR 10318 0.0003 (1/2956) 0 * Os_TE_271557 Os_TE_271557 Chr5 3786654 3786653 + SZ-55_LTR 10318 0.0003 (1/2969) 0 * Os_TE_271558 Os_TE_271540 Chr5 3777275 3777276 + TOS17LTR 138 0.0237 (71/2997) 0 * Os_TE_271539 Os_TE_271539 Chr5 3777271 3777270 - TOS17LTR 138 0.0240 (72/2996) 0 * Os_TE_271540 Os_TE_271533 Chr5 3773608 3773609 + ORSiTERTOOT00404 4839 0.0067 (20/2993) 0 * Os_TE_271532 Os_TE_271532 Chr5 3773604 3773603 - ORSiTERTOOT00404 4839 0.0063 (19/2996) 0 * Os_TE_271533 Os_TE_271511 Chr5 3760692 3760691 - ORSiTERTOOT00183 3603 0.0008 (1/1253) 0 * * Os_TE_271507 Chr5 3759442 3759441 - HATOS1 3488 0.0003 (1/2886) 0 * * Os_TE_271475 Chr5 3751966 3744057 - RIREX_LTR 8828 0.2194 (641/2922) 1 Intact * Os_TE_271462 Chr5 3740436 3740435 + EnSpm-10_OS 11265 0.0055 (16/2918) 0 * * Os_TE_271446 Chr5 3736310 3736309 - RIRE2_LTR 11306 0.0003 (1/2964) 0 * * Os_TE_271445 Chr5 3736024 3736023 + STOWAWAY51_OS 246 0.0004 (1/2801) 0 * Os_TE_271444 Os_TE_271444 Chr5 3736018 3736019 + ORSgTEMT01601591 242 0.0004 (1/2346) 0 * Os_TE_271445 Os_TE_271441 Chr5 3735147 3735148 + ORSiTERTOOT00366 5449 0.0004 (1/2651) 0 * * Os_TE_271428 Chr5 3729593 3729594 + RIRE2_LTR 11306 0.5044 (1503/2980) 0 * Os_TE_271427 Os_TE_271427 Chr5 3729591 3729590 - RIRE2_LTR 11306 0.5064 (1512/2986) 0 * Os_TE_271428 Os_TE_271425 Chr5 3729486 3729487 + TRUNCATOR 2918 0.5092 (1527/2999) 0 * * Os_TE_271420 Chr5 3725432 3725431 - ORSiTETNOOT00134 607 0.0003 (1/2965) 0 * * Os_TE_271413 Chr5 3714839 3714838 + F569 228 0.0004 (1/2811) 0 * * Os_TE_271403 Chr5 3703778 3703779 - ORSiTETNOOT00216 3569 0.0030 (9/2988) 0 * Os_TE_271402 Os_TE_271402 Chr5 3703771 3703770 + TWIFBIG 3567 0.0030 (9/2988) 0 * Os_TE_271403 Os_TE_271396 Chr5 3699870 3699871 - STOWAWAY1_OS 149 0.0017 (5/2993) 0 * Os_TE_271395 Os_TE_271395 Chr5 3699869 3699868 - STOWAWAY1_OS 149 0.0017 (5/2992) 0 * Os_TE_271396 Os_TE_271353 Chr5 3682216 3682215 - MDR2 6967 0.0200 (59/2953) 0 * * Os_TE_271350 Chr5 3680865 3680864 + ORSgTEMT01800100 438 0.0017 (5/2985) 0 * * Os_TE_271333 Chr5 3678370 3678371 + TWIFB1 3737 0.0004 (1/2842) 0 * * Os_TE_271330 Chr5 3678048 3678049 - SC-4_LTR 5218 0.0035 (10/2861) 0 * Os_TE_271329 Os_TE_271329 Chr5 3678044 3678043 + SC-4_LTR 5218 0.0032 (9/2830) 0 * Os_TE_271330 Os_TE_271327 Chr5 3675306 3675307 - SC-3_LTR 5748 0.0010 (3/2998) 0 * Os_TE_271326 Os_TE_271326 Chr5 3675302 3675301 + ORSiTERTOOT00296 5553 0.0010 (3/2999) 0 * Os_TE_271327 Os_TE_271295 Chr5 3663648 3663649 - ORSgTEMT00901138 254 0.0017 (5/2885) 0 * * Os_TE_271260 Chr5 3648265 3648266 - ORSgTETN00200001 10994 0.1353 (400/2956) 0 * Os_TE_271259 Os_TE_271259 Chr5 3648263 3648262 + SPMLIKE 10989 0.1363 (401/2941) 0 * Os_TE_271260 Os_TE_271258 Chr5 3647795 3647796 - SC-3_LTR 5748 0.0238 (71/2980) 0 * Os_TE_271257 Os_TE_271257 Chr5 3647791 3647790 + ORSiTERTOOT00296 5553 0.0234 (70/2991) 0 * Os_TE_271258 Os_TE_271254 Chr5 3646064 3646065 + ORSiTERTOOT00296 5553 0.0003 (1/2998) 0 * Os_TE_271253 Os_TE_271253 Chr5 3646060 3646059 - SC-3_LTR 5748 0.0003 (1/2998) 0 * Os_TE_271254 Os_TE_271218 Chr5 3634548 3634191 + MUDRN5_OS 374 0.7871 (2278/2894) 1 Intact * Os_TE_271209 Chr5 3631056 3631055 - ORSgTEMT00900907 241 0.0020 (6/2956) 0 * * Os_TE_271199 Chr5 3630177 3630178 - ORSgTEMT00501447 126 0.2128 (637/2993) 0 * Os_TE_271198 Os_TE_271198 Chr5 3630175 3630174 - ORSgTEMT00500675 140 0.1957 (578/2953) 0 * Os_TE_271199 Os_TE_271197 Chr5 3629709 3629708 - ORSgTEMT00100799 337 0.0017 (5/2973) 0 * * Os_TE_271195 Chr5 3624735 3624734 - ORSgTEMT01702346 154 0.2016 (592/2936) 0 * * Os_TE_271174 Chr5 3621056 3620911 - ORSgTEMT01700317 132 0.7929 (2293/2892) 1 Intact Os_TE_271173 Os_TE_271173 Chr5 3620901 3621056 + ORSgTEMT01701591 154 0.8004 (2378/2971) 1 Intact Os_TE_271174 Os_TE_271166 Chr5 3619749 3619748 - RETRO2_LTR 12874 0.0003 (1/2985) 0 * * Os_TE_271157 Chr5 3617471 3617470 + CLOUD-7 495 0.0021 (6/2861) 0 * * Os_TE_271133 Chr5 3613260 3613259 - COPIA2-LTR_OS 6433 0.0023 (6/2584) 0 * * Os_TE_271132 Chr5 3611502 3611501 + ORSgTEMT00700017 386 0.0047 (14/2992) 0 * Os_TE_271131 Os_TE_271131 Chr5 3611496 3611497 - ORSgTEMT00700002 381 0.0050 (15/2994) 0 * Os_TE_271132 Os_TE_271065 Chr5 3571626 3571625 + COPIO_LTR 11693 0.0008 (1/1225) 0 * * Os_TE_271055 Chr5 3558935 3558936 + MERMITEA 1710 0.1337 (387/2895) 0 * Os_TE_271054 Os_TE_271054 Chr5 3558927 3558926 - MERMITEA 1710 0.1708 (512/2997) 0 * Os_TE_271055 Os_TE_271053 Chr5 3558252 3557286 + MUDRN3_OS 903 0.2780 (578/2079) 1 Intact * Os_TE_271026 Chr5 3552965 3552964 - F524 291 0.0004 (1/2802) 0 * * Os_TE_271024 Chr5 3552884 3552883 - TEMPINDAS 4259 0.0039 (11/2799) 0 * * Os_TE_270985 Chr5 3541090 3541089 + ORSgTEMT01701547 160 0.1758 (453/2577) 0 * Os_TE_270984 Os_TE_270984 Chr5 3541089 3541090 + STOWAWAY1_OS 149 0.1528 (385/2519) 0 * Os_TE_270985 Os_TE_270968 Chr5 3534914 3534915 + ORSiTERTOOT00226 792 0.0003 (1/2994) 0 * Os_TE_270967 Os_TE_270967 Chr5 3534910 3534909 - SZ-22_LTR 4403 0.0003 (1/2996) 0 * Os_TE_270968 Os_TE_270956 Chr5 3530520 3530521 + F804 170 0.0003 (1/2971) 0 * Os_TE_270955 Os_TE_270955 Chr5 3530512 3530511 - F804 170 0.0003 (1/2968) 0 * Os_TE_270956 Os_TE_270954 Chr5 3527792 3527793 + SC-8_LTR 4951 0.0003 (1/2980) 0 * Os_TE_270953 Os_TE_270953 Chr5 3527788 3527787 - SC-8_LTR 4951 0.0003 (1/2978) 0 * Os_TE_270954 Os_TE_270932 Chr5 3521851 3521852 - ECR 394 0.0010 (3/2953) 0 * * Os_TE_270931 Chr5 3521660 3521659 - ORSgTEMT01400033 210 0.0164 (49/2983) 0 * Os_TE_270930 Os_TE_270930 Chr5 3521657 3521658 - ORSgTEMT01400014 209 0.0174 (52/2985) 0 * Os_TE_270931 Os_TE_270912 Chr5 3512936 3512935 - OSTE14 885 0.0017 (5/2979) 0 * * Os_TE_270910 Chr5 3511325 3511324 + ORSgTEMT02900076 336 0.0017 (5/2959) 0 * * Os_TE_270900 Chr5 3510091 3510092 - ORSgTEMT01600639 228 0.0010 (3/2951) 0 * * Os_TE_270898 Chr5 3509253 3509254 - COPI2_LTR 4733 0.0003 (1/2986) 0 * Os_TE_270897 Os_TE_270897 Chr5 3509249 3509248 + COPI2_LTR 4733 0.0003 (1/2986) 0 * Os_TE_270898 Os_TE_270867 Chr5 3502907 3502906 + YOUREN 286 0.0007 (2/2990) 0 * * Os_TE_270864 Chr5 3502847 3502848 - CASTAWAY 364 0.0171 (51/2991) 0 * Os_TE_270863 Os_TE_270863 Chr5 3502845 3502844 + ORSgTEMT00600287 363 0.0171 (51/2984) 0 * Os_TE_270864 Os_TE_270862 Chr5 3502773 3502772 + ORSgTEMT00901798 232 0.0017 (5/2990) 0 * Os_TE_270861 Os_TE_270861 Chr5 3502769 3502770 + ORSgTEMT00901138 254 0.0017 (5/2987) 0 * Os_TE_270862 Os_TE_270836 Chr5 3491054 3491055 - SC-3_LTR 5748 0.0003 (1/2978) 0 * Os_TE_270835 Os_TE_270835 Chr5 3491050 3491049 + ORSiTERTOOT00296 5553 0.0003 (1/2971) 0 * Os_TE_270836 Os_TE_270825 Chr5 3484038 3484037 + STOWAWAY45_OS 266 0.0111 (33/2983) 0 * Os_TE_270824 Os_TE_270824 Chr5 3484035 3484036 - STOWAWAY45_OS 266 0.0111 (33/2981) 0 * Os_TE_270825 Os_TE_270822 Chr5 3482888 3482889 + SC-8_LTR 4951 0.0007 (2/2995) 0 * Os_TE_270821 Os_TE_270821 Chr5 3482884 3482883 - SC-8_LTR 4951 0.0007 (2/2992) 0 * Os_TE_270822 Os_TE_270796 Chr5 3461411 3461412 - ORSiTERTOOT00329 5144 0.0003 (1/2949) 0 * Os_TE_270795 Os_TE_270795 Chr5 3461404 3461403 + ORSiTERTOOT00329 5144 0.0003 (1/2948) 0 * Os_TE_270796 Os_TE_270777 Chr5 3452956 3452957 + HARB-1_OS 5166 0.0003 (1/2974) 0 * Os_TE_270776 Os_TE_270776 Chr5 3452954 3452953 - HARB-1_OS 5166 0.0003 (1/2982) 0 * Os_TE_270777 Os_TE_270775 Chr5 3452094 3452095 + ORSgTETNOOT00908 242 0.0136 (40/2940) 0 * * Os_TE_270774 Chr5 3451319 3451320 - OSLINE1-3 6101 0.1360 (395/2904) 0 * * Os_TE_270772 Chr5 3450077 3450078 - UNIQUE 158 0.0013 (4/2982) 0 * * Os_TE_270769 Chr5 3449118 3449117 - COPIA2-LTR_OS 6433 0.0003 (1/2964) 0 * * Os_TE_270743 Chr5 3443861 3443862 + RIREX_LTR 8828 0.0010 (3/2929) 0 * Os_TE_270742 Os_TE_270742 Chr5 3443857 3443856 - RIREX_LTR 8828 0.0010 (3/2940) 0 * Os_TE_270743 Os_TE_270707 Chr5 3429554 3429555 - TYPEM 227 0.3323 (976/2937) 0 * * Os_TE_270700 Chr5 3422181 3422182 + ORSiTERTOOT00226 792 0.0112 (22/1970) 0 * Os_TE_270699 Os_TE_270699 Chr5 3422177 3422176 - SZ-22_LTR 4403 0.0112 (22/1971) 0 * Os_TE_270700 Os_TE_270690 Chr5 3410869 3410870 - RETROSAT3_LTR 11537 0.0144 (2/139) -1 * * Os_TE_270644 Chr5 3377630 3377629 - STOWAWAY44_OS 240 0.0005 (1/1928) 0 * * Os_TE_270577 Chr5 3346414 3346415 - SC-4_LTR 5218 0.0003 (1/2994) 0 * * Os_TE_270570 Chr5 3334786 3334787 - COWARD 200 0.6882 (2055/2986) 0 * * Os_TE_270565 Chr5 3332024 3332025 - SC-3_LTR 5748 0.0050 (15/2991) 0 * Os_TE_270564 Os_TE_270564 Chr5 3332020 3332019 + ORSiTERTOOT00296 5553 0.0050 (15/2990) 0 * Os_TE_270565 Os_TE_270549 Chr5 3325148 3325149 - SC-8_LTR 4951 0.0003 (1/2991) 0 * Os_TE_270548 Os_TE_270548 Chr5 3325144 3325143 + SC-8_LTR 4951 0.0003 (1/2991) 0 * Os_TE_270549 Os_TE_270540 Chr5 3321319 3321320 - HARB-1_OS 5166 0.0003 (1/2987) 0 * Os_TE_270539 Os_TE_270539 Chr5 3321317 3321316 + HARB-1_OS 5166 0.0003 (1/2979) 0 * Os_TE_270540 Os_TE_270485 Chr5 3301568 3301567 - RETRO1_LTR 8314 0.0007 (2/2909) 0 * * Os_TE_270474 Chr5 3292157 3292158 - SC-3_LTR 5748 0.0003 (1/2987) 0 * Os_TE_270473 Os_TE_270473 Chr5 3292153 3292152 + ORSiTERTOOT00296 5553 0.0003 (1/2989) 0 * Os_TE_270474 Os_TE_270465 Chr5 3282235 3282234 + SZ-36LTR 5825 0.0014 (1/708) 0 * * Os_TE_270419 Chr5 3250588 3250589 + ORSiTERTOOT00226 792 0.0003 (1/2994) 0 * Os_TE_270418 Os_TE_270418 Chr5 3250584 3250583 - SZ-22_LTR 4403 0.0003 (1/2993) 0 * Os_TE_270419 Os_TE_270405 Chr5 3249264 3249265 - DS-RICE2N 613 0.0475 (142/2989) 0 * Os_TE_270404 Os_TE_270404 Chr5 3249257 3249256 + DS-RICE4N 715 0.0455 (136/2986) 0 * Os_TE_270405 Os_TE_270396 Chr5 3244133 3243898 + ORSgTETNOOT00908 242 0.3173 (949/2991) 1 Intact * Os_TE_270393 Chr5 3242449 3242450 - SC-3_LTR 5748 0.0003 (1/2990) 0 * Os_TE_270392 Os_TE_270392 Chr5 3242445 3242444 + ORSiTERTOOT00296 5553 0.0003 (1/2995) 0 * Os_TE_270393 Os_TE_270390 Chr5 3240438 3240437 + STOWAWAY45_OS 266 0.0017 (5/2861) 0 * Os_TE_270389 Os_TE_270389 Chr5 3240435 3240436 + STOWAWAY45_OS 266 0.0017 (5/2890) 0 * Os_TE_270390 Os_TE_270376 Chr5 3236586 3236587 + COPI2_LTR 4733 0.0003 (1/2966) 0 * Os_TE_270375 Os_TE_270375 Chr5 3236582 3236581 - COPI2_LTR 4733 0.0003 (1/2965) 0 * Os_TE_270376 Os_TE_270374 Chr5 3234605 3234606 - SZ-40LTR 2465 0.0017 (5/2980) 0 * Os_TE_270373 Os_TE_270373 Chr5 3234601 3234600 + SZ-40LTR 2465 0.0017 (5/2990) 0 * Os_TE_270374 Os_TE_270351 Chr5 3221898 3221897 + MPING 430 0.3947 (1179/2987) 0 * * Os_TE_270317 Chr5 3201406 3201407 + COPIA2-LTR_OS 6433 0.0030 (9/2966) 0 * * Os_TE_270249 Chr5 3163790 3163554 + ORSgTETNOOT00908 242 0.3064 (916/2990) 1 Intact Os_TE_270248 Os_TE_270248 Chr5 3163541 3163790 + ORSgTETNOOT00012 241 0.3072 (919/2992) 1 Intact Os_TE_270249 Os_TE_270211 Chr5 3145230 3145229 - CACTA-Q 2268 0.3383 (995/2941) 0 * * Os_TE_270210 Chr5 3145130 3145131 - RIRE2_LTR 11306 0.0169 (50/2960) 0 * Os_TE_270209 Os_TE_270209 Chr5 3145126 3145125 - ORSgTERT00201216 11284 0.0173 (51/2951) 0 * Os_TE_270210 Os_TE_270208 Chr5 3145098 3145097 - STOWAWAY8_OS 259 0.0003 (1/2947) 0 * * Os_TE_270187 Chr5 3139621 3139622 - RETRO2_LTR 12874 0.0168 (49/2910) 0 * Os_TE_270186 Os_TE_270186 Chr5 3139617 3139616 + SZLTR 1249 0.0167 (49/2928) 0 * Os_TE_270187 Os_TE_270184 Chr5 3137773 3137774 - ATLANTYS-LTR_OS 13740 0.0017 (5/2991) 0 * * Os_TE_270181 Chr5 3135225 3135224 - TRUNCATOR 2918 0.0256 (76/2969) 0 * Os_TE_270180 Os_TE_270180 Chr5 3135224 3135225 + TRUNCATOR 2918 0.0263 (78/2971) 0 * Os_TE_270181 Os_TE_270141 Chr5 3121159 3121160 - TRUNCATOR2_LTR 2904 0.0010 (3/2996) 0 * * Os_TE_270135 Chr5 3118504 3118505 - COPI2_LTR 4733 0.0003 (1/2954) 0 * Os_TE_270134 Os_TE_270134 Chr5 3118500 3118499 + COPI2_LTR 4733 0.0003 (1/2952) 0 * Os_TE_270135 Os_TE_270090 Chr5 3106636 3106637 + COPI2_LTR 4733 0.0003 (1/2987) 0 * Os_TE_270089 Os_TE_270089 Chr5 3106632 3106631 - COPI2_LTR 4733 0.0003 (1/2991) 0 * Os_TE_270090 Os_TE_270084 Chr5 3104793 3104794 - SZ-35LTR 3853 0.0325 (97/2983) 0 * * Os_TE_270055 Chr5 3090519 3090520 + ORSgTETNOOT01668 244 0.0132 (28/2123) 0 * * Os_TE_270046 Chr5 3083050 3083051 + SPMLIKE 10989 0.0225 (67/2979) 0 * Os_TE_270045 Os_TE_270045 Chr5 3083048 3083047 - ORSgTETN00200001 10994 0.0235 (70/2980) 0 * Os_TE_270046 Os_TE_270038 Chr5 3081994 3081993 - COPI2_LTR 4733 0.0003 (1/2946) 0 * * Os_TE_270003 Chr5 3078245 3078246 - COPIA2-LTR_OS 6433 0.0003 (1/2944) 0 * Os_TE_270002 Os_TE_270002 Chr5 3078241 3078240 + COPIA2-LTR_OS 6433 0.0003 (1/2940) 0 * Os_TE_270003 Os_TE_269976 Chr5 3069918 3069919 - MPING 430 0.0003 (1/2977) 0 * * Os_TE_269950 Chr5 3061849 3061850 - COPIA2-LTR_OS 6433 0.0004 (1/2596) 0 * Os_TE_269949 Os_TE_269949 Chr5 3061845 3061844 + COPIA2-LTR_OS 6433 0.0004 (1/2607) 0 * Os_TE_269950 Os_TE_269936 Chr5 3056095 3056096 - COPI2_LTR 4733 0.0003 (1/2986) 0 * * Os_TE_269930 Chr5 3052120 3052121 + SC-8_LTR 4951 0.0003 (1/2997) 0 * Os_TE_269929 Os_TE_269929 Chr5 3052116 3052115 - SC-8_LTR 4951 0.0003 (1/2999) 0 * Os_TE_269930 Os_TE_269923 Chr5 3050789 3050788 + NDNA1TNA_OS 334 0.1380 (408/2956) 0 * * Os_TE_269914 Chr5 3049695 3049696 + MUDRN3_OS 903 0.4748 (1208/2544) 0 * Os_TE_269913 Os_TE_269913 Chr5 3049686 3049685 + MUDRN3_OS 903 0.4132 (959/2321) 0 * Os_TE_269914 Os_TE_269911 Chr5 3048839 3048840 - COPIA2-LTR_OS 6433 0.0003 (1/2983) 0 * Os_TE_269910 Os_TE_269910 Chr5 3048835 3048834 + COPIA2-LTR_OS 6433 0.0003 (1/2978) 0 * Os_TE_269911 Os_TE_269896 Chr5 3043582 3043999 + ORSgTEMT00300069 394 0.3506 (1049/2992) 1 Intact * Os_TE_269877 Chr5 3038203 3038202 + RPO_OS 1983 0.0004 (1/2696) 0 * * Os_TE_269865 Chr5 3034888 3034640 - ORSgTEMT00901138 254 0.8665 (2550/2943) 1 Intact * Os_TE_269844 Chr5 3032529 3032530 + ORSiTERTOOT00296 5553 0.0003 (1/2992) 0 * Os_TE_269843 Os_TE_269843 Chr5 3032525 3032524 - SC-3_LTR 5748 0.0003 (1/2989) 0 * Os_TE_269844 Os_TE_269838 Chr5 3029803 3029804 - RETROSAT2LTR 12796 0.0017 (5/2907) 0 * * Os_TE_269837 Chr5 3029684 3023908 - RIRE3A_LTR 10580 0.1720 (499/2902) 1 Intact Os_TE_269830 Os_TE_269830 Chr5 3016432 3029684 + ORSiTERTOOT00027 10853 0.1687 (492/2916) 1 Intact Os_TE_269837 Os_TE_269829 Chr5 3015814 3015815 - SZ-40LTR 2465 0.0240 (70/2917) 0 * * Os_TE_269827 Chr5 3015739 3015738 + RETRO2_LTR 12874 0.0114 (31/2720) 0 * * Os_TE_269823 Chr5 3013573 3013574 + ORSgTEMT02000081 196 0.0006 (1/1735) 0 * * Os_TE_269819 Chr5 3013003 3013004 + MuDR2_OS 6770 0.0224 (66/2948) 0 * * Os_TE_269817 Chr5 3012942 3012943 - ORSgTEMT00600304 361 0.1397 (413/2956) 0 * Os_TE_269816 Os_TE_269816 Chr5 3012939 3012938 - ORSgTEMT00600129 350 0.1396 (413/2958) 0 * Os_TE_269817 Os_TE_269815 Chr5 3012755 3012756 - HARB-1_OS 5166 0.0003 (1/2980) 0 * Os_TE_269814 Os_TE_269814 Chr5 3012753 3012752 + HARB-1_OS 5166 0.0003 (1/2984) 0 * Os_TE_269815 Os_TE_269801 Chr5 3003378 2999181 - MuDR2_OS 6770 0.1681 (503/2992) 1 Intact Os_TE_269800 Os_TE_269800 Chr5 2999181 3003378 + MuDR2_OS 6770 0.1607 (478/2974) 1 Intact Os_TE_269801 Os_TE_269792 Chr5 2994670 2994671 - ENSPM7_OS 10954 0.0003 (1/2977) 0 * * Os_TE_269768 Chr5 2983578 2982263 + DS-RICE4N 715 0.1908 (563/2950) 1 Intact Os_TE_269767 Os_TE_269767 Chr5 2982136 2983578 - DS-RICE2N 613 0.1955 (578/2956) 1 Intact Os_TE_269768 Os_TE_269752 Chr5 2967207 2967206 + RIREX_LTR 8828 0.0379 (113/2985) 0 * * Os_TE_269721 Chr5 2952290 2945395 + RIREX_LTR 8828 0.1911 (573/2998) 1 Intact Os_TE_269715 Os_TE_269715 Chr5 2945395 2952290 - RIRE2_LTR 11306 0.1915 (574/2998) 1 Intact Os_TE_269721 Os_TE_269707 Chr5 2941451 2941450 - SC-8_LTR 4951 0.0003 (1/2998) 0 * * Os_TE_269704 Chr5 2939413 2939412 + SC-8_LTR 4951 0.0007 (2/2991) 0 * * Os_TE_269678 Chr5 2921211 2921212 + RIREX_LTR 8828 0.0236 (70/2967) 0 * Os_TE_269677 Os_TE_269677 Chr5 2921207 2921206 - RIREX_LTR 8828 0.0229 (68/2964) 0 * Os_TE_269678 Os_TE_269655 Chr5 2915035 2915036 + STOWAWAY51_OS 246 0.0003 (1/2970) 0 * * Os_TE_269643 Chr5 2903755 2903756 - MPING 430 0.0007 (2/2938) 0 * Os_TE_269642 Os_TE_269642 Chr5 2903753 2903752 + MPING 430 0.0007 (2/2959) 0 * Os_TE_269643 Os_TE_269638 Chr5 2902727 2902728 - COPIA2-LTR_OS 6433 0.0061 (18/2952) 0 * * Os_TE_269636 Chr5 2902172 2902173 - INDITTO 263 0.6188 (1836/2967) 0 * Os_TE_269635 Os_TE_269635 Chr5 2902170 2902169 + INDITTO 263 0.6156 (1813/2945) 0 * Os_TE_269636 Os_TE_269634 Chr5 2901753 2901754 + AMYLTP 383 0.0010 (3/2939) 0 * Os_TE_269633 Os_TE_269633 Chr5 2901745 2901744 - AMYLTP 383 0.0014 (4/2939) 0 * Os_TE_269634 Os_TE_269632 Chr5 2900750 2900749 + ORSiTEMT00300001 383 0.0007 (2/2944) 0 * * Os_TE_269630 Chr5 2900150 2900149 - Cassandra_OS-LTR 764 0.0637 (189/2966) 0 * * Os_TE_269629 Chr5 2899695 2899696 - SZ-22_LTR 4403 0.0060 (18/2983) 0 * Os_TE_269628 Os_TE_269628 Chr5 2899691 2899690 + ORSiTERTOOT00034 791 0.0060 (18/2987) 0 * Os_TE_269629 Os_TE_269627 Chr5 2899651 2899650 - ORSgTETNOOT02565 240 0.0241 (72/2989) 0 * * Os_TE_269625 Chr5 2894327 2894328 - SC-3_LTR 5748 0.0003 (1/2982) 0 * Os_TE_269624 Os_TE_269624 Chr5 2894323 2894322 + ORSiTERTOOT00296 5553 0.0003 (1/2978) 0 * Os_TE_269625 Os_TE_269615 Chr5 2890773 2891007 + ORSgTETNOOT00908 242 0.3084 (919/2980) 0.88 Intact * Os_TE_269594 Chr5 2875206 2875207 + ORSiTERTOOT00296 5553 0.0007 (2/2996) 0 * Os_TE_269593 Os_TE_269593 Chr5 2875202 2875201 - SC-3_LTR 5748 0.0007 (2/2996) 0 * Os_TE_269594 Os_TE_269592 Chr5 2874415 2874414 - RIREX_LTR 8828 0.0007 (2/2984) 0 * * Os_TE_269580 Chr5 2870115 2870114 - ORSgTERT00201216 11284 0.0003 (1/2990) 0 * * Os_TE_269564 Chr5 2866572 2866573 + ORSgTEMT00700017 386 0.0003 (1/2871) 0 * * Os_TE_269510 Chr5 2830741 2830742 + MPING 430 0.0003 (1/2996) 0 * Os_TE_269509 Os_TE_269509 Chr5 2830739 2830738 - MPING 430 0.0003 (1/2995) 0 * Os_TE_269510 Os_TE_269500 Chr5 2829212 2829211 + STOWAWAY51_OS 246 0.0003 (1/2966) 0 * Os_TE_269499 Os_TE_269499 Chr5 2829206 2829207 - STOWAWAY51_OS 246 0.0003 (1/2977) 0 * Os_TE_269500 Os_TE_269479 Chr5 2818803 2818802 + RIREX_LTR 8828 0.0003 (1/2989) 0 * * Os_TE_269463 Chr5 2809383 2808298 + RETRO2_LTR 12874 0.1904 (570/2994) 1 Solo_LTR * Os_TE_269456 Chr5 2797483 2803410 - COPIA2-LTR_OS 6433 0.1899 (567/2985) 1 Intact * Os_TE_269432 Chr5 2788966 2788967 + ORSiTERTOOT00296 5553 0.1087 (325/2991) 0 * Os_TE_269431 Os_TE_269431 Chr5 2788962 2788961 - SC-3_LTR 5748 0.1083 (324/2992) 0 * Os_TE_269432 Os_TE_269392 Chr5 2777036 2776852 - OsSN3 183 0.8700 (2591/2978) 1 Intact Os_TE_269391 Os_TE_269391 Chr5 2776851 2777035 + OsSN3 183 0.8692 (2558/2943) 1 Intact Os_TE_269392 Os_TE_269365 Chr5 2758739 2758740 + ORSiTERTOOT00381 4988 0.0050 (5/1000) 0 * Os_TE_269364 Os_TE_269364 Chr5 2758735 2758734 - SC-8_LTR 4951 0.0040 (4/998) 0 * Os_TE_269365 Os_TE_269336 Chr5 2741445 2741228 - ORSgTEMT02400246 177 0.1890 (565/2990) 1 Intact Os_TE_269332 Os_TE_269332 Chr5 2741224 2741441 - TYPEM 227 0.1907 (569/2984) 1 Intact Os_TE_269336 Os_TE_269331 Chr5 2739872 2739873 - ORSiTERTOOT00367 5639 0.0007 (2/2993) 0 * Os_TE_269330 Os_TE_269330 Chr5 2739868 2739867 + ORSiTERTOOT00367 5639 0.0007 (2/2994) 0 * Os_TE_269331 Os_TE_269316 Chr5 2736127 2736126 + ORSgTEMT01400024 215 0.6849 (2054/2999) 0 * Os_TE_269315 Os_TE_269315 Chr5 2736121 2736122 - ORSgTEMT01400022 212 0.6854 (2052/2994) 0 * Os_TE_269316 Os_TE_269298 Chr5 2716290 2716291 + ORSgTETN00100072 209 0.0007 (2/2991) 0 * * Os_TE_269296 Chr5 2712179 2712180 - ORSiTETNOOT00134 607 0.0003 (1/2973) 0 * Os_TE_269295 Os_TE_269295 Chr5 2712172 2712171 + TWIF 586 0.0003 (1/2975) 0 * Os_TE_269296 Os_TE_269284 Chr5 2704534 2704533 + TWIFB1 3737 0.0234 (70/2995) 0 * * Os_TE_269246 Chr5 2679320 2678868 - MuDR4_OS 7610 0.1839 (542/2948) 1 Intact Os_TE_269245 Os_TE_269245 Chr5 2678868 2679321 - MuDR4_OS 7610 0.1846 (544/2947) 1 Intact Os_TE_269246 Os_TE_269244 Chr5 2678147 2678148 + ORSiTERTOOT00296 5553 0.0371 (111/2991) 0 * Os_TE_269243 Os_TE_269243 Chr5 2678143 2678142 - SC-3_LTR 5748 0.0368 (110/2991) 0 * Os_TE_269244 Os_TE_269196 Chr5 2658588 2658589 + RIRE2_LTR 11306 0.0007 (2/2996) 0 * * Os_TE_269183 Chr5 2655370 2655371 + STOWAWAY51_OS 246 0.0013 (4/2979) 0 * * Os_TE_269179 Chr5 2654244 2654243 + SINE03_OS 360 0.0026 (6/2351) 0 * * Os_TE_269174 Chr5 2651930 2651931 - SC-3_LTR 5748 0.0003 (1/2980) 0 * Os_TE_269173 Os_TE_269173 Chr5 2651926 2651925 + ORSiTERTOOT00296 5553 0.0003 (1/2977) 0 * Os_TE_269174 Os_TE_269169 Chr5 2645326 2645327 - SC-3_LTR 5748 0.0027 (8/2985) 0 * Os_TE_269168 Os_TE_269168 Chr5 2645322 2645321 + ORSiTERTOOT00296 5553 0.0027 (8/2985) 0 * Os_TE_269169 Os_TE_269152 Chr5 2630888 2630887 + ORSgTEMT00500419 153 0.0017 (5/2993) 0 * * Os_TE_269146 Chr5 2628873 2628872 - SC-3_LTR 5748 0.0003 (1/2944) 0 * * Os_TE_269145 Chr5 2627852 2627853 + ORSiTERTOOT00329 5144 0.6701 (1972/2943) 0 * Os_TE_269144 Os_TE_269144 Chr5 2627846 2627845 - ORSiTERTOOT00329 5144 0.6826 (2041/2990) 0 * Os_TE_269145 Os_TE_269140 Chr5 2625031 2625032 + COPIA2-LTR_OS 6433 0.0007 (2/2926) 0 * Os_TE_269139 Os_TE_269139 Chr5 2625027 2625026 - COPIA2-LTR_OS 6433 0.0007 (2/2932) 0 * Os_TE_269140 Os_TE_269127 Chr5 2620916 2620917 - SC-3_LTR 5748 0.0003 (1/2987) 0 * Os_TE_269126 Os_TE_269126 Chr5 2620912 2620911 + ORSiTERTOOT00296 5553 0.0003 (1/2989) 0 * Os_TE_269127 Os_TE_269123 Chr5 2617756 2617757 - ORSgTEMT00101657 321 0.0017 (5/2919) 0 * * Os_TE_269113 Chr5 2609909 2609908 - STOWAWAY21_OS 243 0.0028 (8/2895) 0 * * Os_TE_269103 Chr5 2607816 2607817 - MDR2 6967 0.3694 (324/877) 0 * Os_TE_269102 Os_TE_269102 Chr5 2607806 2607805 + MDR2 6967 0.3737 (336/899) 0 * Os_TE_269103 Os_TE_269094 Chr5 2605093 2605094 + F524 291 0.1407 (406/2885) 0 * Os_TE_269093 Os_TE_269093 Chr5 2605081 2605080 - F524 291 0.1366 (396/2900) 0 * Os_TE_269094 Os_TE_269090 Chr5 2603431 2603432 + EXPLORER 210 0.8118 (2317/2854) 0 * * Os_TE_269085 Chr5 2599458 2599457 + STOWAWAY45_OS 266 0.8181 (2366/2892) 0 * Os_TE_269084 Os_TE_269084 Chr5 2599455 2599456 + STOWAWAY45_OS 266 0.8212 (2375/2892) 0 * Os_TE_269085 Os_TE_269077 Chr5 2594711 2594712 - MDM1 326 0.8213 (2372/2888) 0 * * Os_TE_269074 Chr5 2594257 2594118 - ORSgTETNOOT00623 140 0.1819 (542/2980) 1 Intact Os_TE_269072 Os_TE_269072 Chr5 2594115 2594254 + ORSgTEMT00500201 140 0.1841 (550/2987) 1 Intact Os_TE_269074 Os_TE_269069 Chr5 2593906 2593907 + ORSgTEMT01601122 212 0.8116 (2304/2839) 0 * * Os_TE_269061 Chr5 2590464 2590235 + ORSgTEMT01600374 210 0.1496 (425/2841) 1 Intact Os_TE_269059 Os_TE_269059 Chr5 2590235 2590469 - ORSgTEMT01601097 233 0.1874 (472/2519) 1 Intact Os_TE_269061 Os_TE_269010 Chr5 2563763 2563764 - ORSiTETNOOT00134 607 0.0017 (5/2975) 0 * Os_TE_269009 Os_TE_269009 Chr5 2563756 2563755 + TWIF 586 0.0020 (6/2954) 0 * Os_TE_269010 Os_TE_268994 Chr5 2558417 2558416 + ORSiTERTOOT00296 5553 0.0010 (3/2949) 0 * * Os_TE_268988 Chr5 2553687 2553688 + ORSiTERTOOT00296 5553 0.0003 (1/2952) 0 * Os_TE_268987 Os_TE_268987 Chr5 2553683 2553682 - SC-3_LTR 5748 0.0003 (1/2952) 0 * Os_TE_268988 Os_TE_268979 Chr5 2546231 2546232 + TWIFBIG 3567 0.0007 (2/2989) 0 * * Os_TE_268959 Chr5 2535172 2535173 - SC-3_LTR 5748 0.0090 (27/2998) 0 * * Os_TE_268953 Chr5 2528652 2528653 + ENSPM4_OS 11610 0.0003 (1/2966) 0 * * Os_TE_268939 Chr5 2522128 2522127 + INDITTO 263 0.0017 (5/2976) 0 * * Os_TE_268927 Chr5 2519965 2519966 - INDITTO 263 0.0003 (1/2996) 0 * * Os_TE_268917 Chr5 2515870 2515871 + SC-8_LTR 4951 0.0010 (3/2992) 0 * Os_TE_268916 Os_TE_268916 Chr5 2515866 2515865 - SC-8_LTR 4951 0.0010 (3/2991) 0 * Os_TE_268917 Os_TE_268913 Chr5 2514216 2514217 - SC-3_LTR 5748 0.0003 (1/2986) 0 * Os_TE_268912 Os_TE_268912 Chr5 2514212 2514211 + ORSiTERTOOT00296 5553 0.0003 (1/2992) 0 * Os_TE_268913 Os_TE_268898 Chr5 2505885 2505886 + ORSgTEMT00600360 369 0.0004 (1/2649) 0 * * Os_TE_268854 Chr5 2491821 2491822 - RIRE2_LTR 11306 0.0255 (76/2975) 0 * * Os_TE_268834 Chr5 2486389 2486390 + CACTA-I 1124 0.6168 (1843/2988) 0 * Os_TE_268833 Os_TE_268833 Chr5 2486387 2486386 - CACTA-H 1152 0.6088 (1796/2950) 0 * Os_TE_268834 Os_TE_268832 Chr5 2486054 2486055 + ORSgTETNOOT00032 218 0.0254 (76/2994) 0 * * Os_TE_268826 Chr5 2482276 2482277 - COPI2_LTR 4733 0.0010 (3/2986) 0 * Os_TE_268825 Os_TE_268825 Chr5 2482272 2482271 + COPI2_LTR 4733 0.0010 (3/2991) 0 * Os_TE_268826 Os_TE_268819 Chr5 2480631 2480632 + TELIA 141 0.0391 (116/2968) 0 * Os_TE_268818 Os_TE_268818 Chr5 2480623 2480622 - TELIA 141 0.0387 (115/2972) 0 * Os_TE_268819 Os_TE_268817 Chr5 2480333 2480334 - EnSpm-13_OS 11171 0.0003 (1/2935) 0 * Os_TE_268816 Os_TE_268816 Chr5 2480331 2480330 + EnSpm-13_OS 11171 0.0003 (1/2963) 0 * Os_TE_268817 Os_TE_268814 Chr5 2479441 2479442 + RETROSAT4_LTR 13504 0.0003 (1/2900) 0 * * Os_TE_268811 Chr5 2478783 2478784 - INDITTO 263 0.1214 (363/2989) 0 * Os_TE_268810 Os_TE_268810 Chr5 2478781 2478780 + INDITTO 263 0.1203 (360/2993) 0 * Os_TE_268811 Os_TE_268808 Chr5 2478611 2478610 + ENSPM4_OS 11610 0.0250 (75/2996) 0 * * Os_TE_268799 Chr5 2471953 2471954 + ORSgTERT00201439 799 0.0010 (3/2996) 0 * * Os_TE_268797 Chr5 2468972 2468973 - EnSpm-N2_OS 1282 0.0003 (1/2979) 0 * * Os_TE_268794 Chr5 2468010 2468009 - ATLANTYS-LTR_OS 13740 0.0003 (1/2967) 0 * * Os_TE_268792 Chr5 2465810 2465811 + ORSgTETNOOT00032 218 0.0202 (59/2924) 0 * * Os_TE_268790 Chr5 2465547 2465548 - EnSpm-13_OS 11171 0.0010 (3/2920) 0 * Os_TE_268789 Os_TE_268789 Chr5 2465545 2465544 + EnSpm-13_OS 11171 0.0010 (3/2927) 0 * Os_TE_268790 Os_TE_268777 Chr5 2460916 2460917 - SZ-35LTR 3853 0.0017 (5/2981) 0 * Os_TE_268776 Os_TE_268776 Chr5 2460912 2460911 + RETROSAT4_LTR 13504 0.0017 (5/2983) 0 * Os_TE_268777 Os_TE_268774 Chr5 2460052 2453630 + OSTONOR1_LTR 6440 0.2567 (765/2980) 1 Intact Os_TE_268773 Os_TE_268773 Chr5 2453630 2460052 - OSTONOR1_LTR 6440 0.2626 (787/2997) 1 Intact Os_TE_268774 Os_TE_268756 Chr5 2444307 2444308 + SZ-55_LTR 10318 0.0003 (1/2987) 0 * Os_TE_268755 Os_TE_268755 Chr5 2444303 2444302 - SZ-55_LTR 10318 0.0003 (1/2987) 0 * Os_TE_268756 Os_TE_268735 Chr5 2434715 2423412 - RIRE2_LTR 11306 0.1314 (393/2990) 1 Intact Os_TE_268734 Os_TE_268734 Chr5 2423412 2434715 - ORSgTERT00201216 11284 0.1321 (395/2990) 1 Intact Os_TE_268735 Os_TE_268721 Chr5 2420954 2420953 - NDNA2TNA_OS 346 0.0775 (229/2954) 0 * * Os_TE_268720 Chr5 2420609 2420610 + COPIA2-LTR_OS 6433 0.0003 (1/2961) 0 * Os_TE_268719 Os_TE_268719 Chr5 2420605 2420604 - COPIA2-LTR_OS 6433 0.0003 (1/2958) 0 * Os_TE_268720 Os_TE_268671 Chr5 2398388 2398387 + NDNA1TNA_OS 334 0.0318 (95/2992) 0 * Os_TE_268670 Os_TE_268670 Chr5 2398361 2398362 + ORSgTEMT00101674 340 0.0314 (94/2994) 0 * Os_TE_268671 Os_TE_268669 Chr5 2398192 2398191 + ORSgTEMT00500610 153 0.0017 (5/2973) 0 * * Os_TE_268618 Chr5 2378014 2378015 + STOWAWAY43_OS 233 0.1698 (503/2962) 0 * * Os_TE_268608 Chr5 2376501 2376737 + TREP215 239 0.8606 (2365/2748) 1 Intact * Os_TE_268605 Chr5 2375778 2375777 + ORSiCMCM00100019 2717 0.0008 (2/2459) 0 * * Os_TE_268591 Chr5 2371730 2371729 - COPIA2-LTR_OS 6433 0.0020 (5/2498) 0 * * Os_TE_268577 Chr5 2362236 2362459 + ORSgTEMT02400034 225 0.1653 (414/2504) 1 Intact * Os_TE_268546 Chr5 2357693 2357692 - STOWAWAY51_OS 246 0.0004 (1/2516) 0 * Os_TE_268545 Os_TE_268545 Chr5 2357690 2357691 - STOWAWAY51_OS 246 0.0004 (1/2517) 0 * Os_TE_268546 Os_TE_268538 Chr5 2355819 2355820 + QINNIU 528 0.1970 (492/2497) 0 * Os_TE_268537 Os_TE_268537 Chr5 2355812 2355811 - HATOS1 3488 0.1968 (492/2500) 0 * Os_TE_268538 Os_TE_268529 Chr5 2350629 2350628 - LINE-6_OS 4886 0.1739 (520/2990) 0 * * Os_TE_268526 Chr5 2349280 2349281 + RETRO2_LTR 12874 0.0044 (11/2474) 0 * Os_TE_268525 Os_TE_268525 Chr5 2349276 2349275 - RETRO2_LTR 12874 0.0045 (11/2464) 0 * Os_TE_268526 Os_TE_268520 Chr5 2347093 2347094 + MuDR2_OS 6770 0.0508 (149/2932) 0 * Os_TE_268519 Os_TE_268519 Chr5 2347084 2347083 - MuDR2_OS 6770 0.0698 (172/2464) 0 * Os_TE_268520 Os_TE_268498 Chr5 2330175 2328997 - OSTE1 801 0.8401 (2512/2990) 1 Intact * Os_TE_268496 Chr5 2328849 2328850 - RETROSAT3_LTR 11537 0.0088 (26/2952) 0 * Os_TE_268495 Os_TE_268495 Chr5 2328844 2328843 + RETROSAT2LTRA 3112 0.0087 (26/2996) 0 * Os_TE_268496 Os_TE_268493 Chr5 2328568 2328712 + TNR2A 152 0.1478 (371/2510) 1 Intact * Os_TE_268488 Chr5 2325500 2325499 + ORSgTEMT01701861 113 0.0007 (2/2951) 0 * * Os_TE_268464 Chr5 2321800 2321117 - OSTE24 683 0.1192 (355/2978) 1 Intact Os_TE_268463 Os_TE_268463 Chr5 2321118 2321800 - OSTE24 683 0.1223 (365/2985) 1 Intact Os_TE_268464 Os_TE_268448 Chr5 2309123 2308969 - ORSgTEMT01701591 154 0.3022 (903/2988) 1 Intact Os_TE_268447 Os_TE_268447 Chr5 2308969 2309115 + ORSgTEMT01701418 151 0.3526 (905/2567) 1 Intact Os_TE_268448 Os_TE_268440 Chr5 2306420 2306419 + ORSgTEMT01701056 154 0.0014 (4/2899) 0 * * Os_TE_268425 Chr5 2303648 2303647 - ORSiTETNOOT00216 3569 0.0013 (4/2991) 0 * * Os_TE_268407 Chr5 2295119 2295118 - SZ-35LTR 3853 0.0003 (1/2985) 0 * * Os_TE_268405 Chr5 2295024 2295025 - CACTA-H 1152 0.1372 (409/2981) 0 * Os_TE_268404 Os_TE_268404 Chr5 2295022 2295021 + CACTA-H 1152 0.1377 (407/2956) 0 * Os_TE_268405 Os_TE_268403 Chr5 2294906 2294907 + RETROSAT4_LTR 13504 0.1588 (474/2985) 0 * * Os_TE_268360 Chr5 2270248 2270247 - RIRE2_LTR 11306 0.0003 (1/2964) 0 * * Os_TE_268356 Chr5 2269168 2269169 - ORSgTETN00200001 10994 0.1006 (298/2963) 0 * * Os_TE_268353 Chr5 2269020 2268169 - SZ-9LTR 965 0.6684 (1949/2916) 1 Intact Os_TE_268352 Os_TE_268352 Chr5 2268169 2269020 + SZ-9LTR 965 0.6805 (1972/2898) 1 Intact Os_TE_268353 Os_TE_268343 Chr5 2264138 2264139 - ORSgTETN00200001 10994 0.1388 (414/2983) 0 * Os_TE_268342 Os_TE_268342 Chr5 2264136 2264135 + SPMLIKE 10989 0.1325 (393/2967) 0 * Os_TE_268343 Os_TE_268341 Chr5 2263880 2263881 - RETROSAT4_LTR 13504 0.0861 (257/2985) 0 * Os_TE_268340 Os_TE_268340 Chr5 2263878 2263877 + RETROSAT4_LTR 13504 0.0843 (251/2979) 0 * Os_TE_268341 Os_TE_268337 Chr5 2262970 2262969 + ORSgTETNOOT00908 242 0.4663 (1396/2994) 0 * * Os_TE_268312 Chr5 2250328 2250327 + ORSgTEMT01602181 239 0.0304 (91/2990) 0 * Os_TE_268311 Os_TE_268311 Chr5 2250325 2250326 - ORSgTEMT01602404 253 0.0298 (89/2991) 0 * Os_TE_268312 Os_TE_268307 Chr5 2249260 2249261 - ORSgTEMT01400022 212 0.0287 (86/2993) 0 * * Os_TE_268289 Chr5 2243007 2243006 - ORSgTEMT02400246 177 0.0003 (1/2964) 0 * Os_TE_268288 Os_TE_268288 Chr5 2243006 2243007 - TYPEM 227 0.0003 (1/2978) 0 * Os_TE_268289 Os_TE_268287 Chr5 2242655 2242656 - INDITTO 263 0.0003 (1/2991) 0 * Os_TE_268286 Os_TE_268286 Chr5 2242653 2242652 + INDITTO 263 0.0003 (1/2987) 0 * Os_TE_268287 Os_TE_268274 Chr5 2241337 2241338 - MuDR4_OS 7610 0.0865 (259/2995) 0 * Os_TE_268273 Os_TE_268273 Chr5 2241330 2241329 + MuDR4_OS 7610 0.0849 (254/2992) 0 * Os_TE_268274 Os_TE_268270 Chr5 2240556 2240557 + RETRO1_LTR 8314 0.0015 (4/2609) 0 * Os_TE_268269 Os_TE_268269 Chr5 2240552 2240551 - RETRO1_LTR 8314 0.0015 (4/2610) 0 * Os_TE_268270 Os_TE_268267 Chr5 2239172 2232726 - COPIA2-LTR_OS 6433 0.2343 (696/2970) 1 Intact Os_TE_268266 Os_TE_268266 Chr5 2232726 2239172 + COPIA2-LTR_OS 6433 0.2255 (659/2923) 1 Intact Os_TE_268267 Os_TE_268254 Chr5 2229659 2229658 + ORSgTEMT00600272 361 0.0258 (76/2942) 0 * * Os_TE_268253 Chr5 2228408 2228409 + SPMLIKE 10989 0.0003 (1/2997) 0 * Os_TE_268252 Os_TE_268252 Chr5 2228406 2228405 - ORSgTETN00200001 10994 0.0003 (1/2998) 0 * Os_TE_268253 Os_TE_268247 Chr5 2227368 2227369 - ORSgTETNOOT02565 240 0.0013 (4/2993) 0 * * Os_TE_268226 Chr5 2216713 2216712 - TELIA 141 0.0016 (2/1235) 0 * * Os_TE_268219 Chr5 2213544 2213545 - RIRE5-LTR_OS 6427 0.0007 (2/2993) 0 * Os_TE_268218 Os_TE_268218 Chr5 2213537 2213536 + RIRE5-LTR_OS 6427 0.0007 (2/2987) 0 * Os_TE_268219 Os_TE_268210 Chr5 2211534 2211533 - STOWAWAY9_OS 235 0.0520 (136/2616) 0 * Os_TE_268209 Os_TE_268209 Chr5 2211531 2211532 - ORSgTEMT01400011 212 0.0311 (79/2543) 0 * Os_TE_268210 Os_TE_268207 Chr5 2211323 2211062 + STOWAWAY48_OS 261 0.7625 (1920/2518) 1 Intact * Os_TE_268202 Chr5 2209875 2209874 + ORSgTEMT01601983 238 0.0007 (2/2927) 0 * Os_TE_268201 Os_TE_268201 Chr5 2209872 2209873 - ORSgTEMT01601432 239 0.0007 (2/2928) 0 * Os_TE_268202 Os_TE_268199 Chr5 2208042 2207885 - SNAP-OL3 189 0.7730 (2278/2947) 1 Intact Os_TE_268198 Os_TE_268198 Chr5 2207883 2208040 + SNAP-OL3 189 0.7547 (2049/2715) 1 Intact Os_TE_268199 Os_TE_268180 Chr5 2194457 2194456 - F524 291 0.0007 (2/2931) 0 * * Os_TE_268170 Chr5 2192860 2192859 - ORSgTEMT01602277 239 0.1862 (551/2959) 0 * * Os_TE_268169 Chr5 2192857 2192858 - ORSgTEMT01602413 239 0.1856 (548/2952) 0 * Os_TE_268168 Os_TE_268168 Chr5 2192853 2192852 + ORSgTEMT01601571 232 0.0033 (8/2452) 0 * Os_TE_268169 Os_TE_268160 Chr5 2191703 2191856 - UNIQUE 158 0.8206 (2438/2971) 1 Intact * Os_TE_268158 Chr5 2191566 2191567 - STOWAWAY51_OS 246 0.0003 (1/2993) 0 * * Os_TE_268156 Chr5 2191088 2191089 + RETROSAT4_LTR 13504 0.0258 (77/2979) 0 * Os_TE_268155 Os_TE_268155 Chr5 2191084 2191083 - SZ-35LTR 3853 0.0272 (81/2976) 0 * Os_TE_268156 Os_TE_268152 Chr5 2189176 2189175 - CACTA-H 1152 0.0037 (11/2981) 0 * Os_TE_268151 Os_TE_268151 Chr5 2189175 2189176 + CACTA-B 1103 0.0040 (12/2988) 0 * Os_TE_268152 Os_TE_268142 Chr5 2187488 2187489 - ORSgTEMT00600088 357 0.0003 (1/2876) 0 * Os_TE_268139 Os_TE_268141 Chr5 2187479 2187480 - CASTAWAY 364 0.0231 (68/2944) 0 * Os_TE_268140 Os_TE_268140 Chr5 2187477 2187476 + ORSgTEMT00600120 364 0.0225 (66/2932) 0 * Os_TE_268141 Os_TE_268139 Chr5 2187471 2187470 + ORSgTEMT00600526 356 0.0221 (65/2944) 0 * Os_TE_268142 Os_TE_268134 Chr5 2186315 2186316 + NDNA1TNA_OS 334 0.0003 (1/2992) 0 * * Os_TE_268121 Chr5 2184373 2184372 + ORSgTEMT01602181 239 0.1518 (453/2985) 0 * Os_TE_268120 Os_TE_268120 Chr5 2184368 2184369 - ORSgTEMT01601432 239 0.1468 (436/2970) 0 * Os_TE_268121 Os_TE_268117 Chr5 2183277 2183276 - COPI2_LTR 4733 0.0003 (1/2954) 0 * * Os_TE_268112 Chr5 2181056 2181055 - COPI2_LTR 4733 0.0003 (1/2864) 0 * * Os_TE_268090 Chr5 2164855 2164856 + SETARIA2 1142 0.2862 (838/2928) 0 * Os_TE_268089 Os_TE_268089 Chr5 2164849 2164848 + SETARIA1 1293 0.2684 (771/2873) 0 * Os_TE_268090 Os_TE_268058 Chr5 2156112 2156111 - ORSgTEMT01601493 303 0.1161 (337/2903) 0 * Os_TE_268057 Os_TE_268057 Chr5 2156109 2156110 - ORSgTEMT01601834 234 0.1144 (330/2885) 0 * Os_TE_268058 Os_TE_268015 Chr5 2150720 2150721 - F569 228 0.0027 (8/2946) 0 * * Os_TE_267988 Chr5 2140617 2140378 + ORSgTEMT01602004 234 0.4440 (1304/2937) 1 Intact * Os_TE_267974 Chr5 2138021 2138020 - ORSgTEMT01601432 239 0.1141 (327/2867) 0 * Os_TE_267973 Os_TE_267973 Chr5 2138018 2138019 - ORSgTEMT01600201 236 0.1035 (286/2763) 0 * Os_TE_267974 Os_TE_267971 Chr5 2137242 2137243 + RETROSAT4_LTR 13504 0.0294 (85/2890) 0 * * Os_TE_267963 Chr5 2133941 2133942 - SZ-40LTR 2465 0.0030 (9/2975) 0 * Os_TE_267962 Os_TE_267962 Chr5 2133938 2133937 + SZ-40LTR 2465 0.0030 (9/2972) 0 * Os_TE_267963 Os_TE_267961 Chr5 2133553 2133313 - ORSgTEMT01602413 239 0.4349 (1296/2980) 1 Intact Os_TE_267960 Os_TE_267960 Chr5 2133319 2133553 + ORSgTEMT01600891 233 0.4329 (1258/2906) 1 Intact Os_TE_267961 Os_TE_267958 Chr5 2133254 2131361 - MERMITE18E 1528 0.3898 (1121/2876) 1 Intact Os_TE_267955 Os_TE_267955 Chr5 2131360 2133254 + MERMITEB 1610 0.4107 (1224/2980) 1 Intact Os_TE_267958 Os_TE_267924 Chr5 2122071 2122070 - COPIA2-LTR_OS 6433 0.1405 (243/1729) -1 * * Os_TE_267922 Chr5 2121991 2121992 + COPIA2-LTR_OS 6433 0.1363 (184/1350) -1 * * Os_TE_267921 Chr5 2121942 2121943 + RIREX_LTR 8828 0.0004 (1/2827) 0 * * Os_TE_267920 Chr5 2121886 2121887 + OSTE33 1012 0.5999 (1705/2842) 0 * * Os_TE_267919 Chr5 2121126 2121127 + COPI2_LTR 4733 0.0003 (1/2963) 0 * * Os_TE_267911 Chr5 2119839 2119692 - ORSgTEMT00501591 149 0.4394 (1312/2986) 1 Intact Os_TE_267910 Os_TE_267910 Chr5 2119690 2119830 + ORSgTEMT00502437 145 0.4421 (1321/2988) 1 Intact Os_TE_267911 Os_TE_267905 Chr5 2117519 2117518 + ORSgTEMT01601122 212 0.4729 (1178/2491) 0 * * Os_TE_267897 Chr5 2113160 2113159 + ORSiCMCM00100019 2717 0.1164 (346/2973) 0 * * Os_TE_267896 Chr5 2110558 2110559 + Cassandra_OS-LTR 764 0.0015 (4/2685) 0 * Os_TE_267895 Os_TE_267895 Chr5 2110554 2110553 - Cassandra_OS-LTR 764 0.0017 (5/2890) 0 * Os_TE_267896 Os_TE_267894 Chr5 2110422 2110421 + NDNA1TNA_OS 334 0.0290 (84/2897) 0 * * Os_TE_267892 Chr5 2108592 2108593 + SZ-55_LTR 10318 0.0003 (1/2989) 0 * * Os_TE_267879 Chr5 2106938 2106939 - RIRE2_LTR 11306 0.0045 (13/2906) 0 * Os_TE_267878 Os_TE_267878 Chr5 2106934 2106933 - ORSgTERT00201216 11284 0.0048 (14/2904) 0 * Os_TE_267879 Os_TE_267877 Chr5 2105858 2105859 + MPING 430 0.0007 (2/2981) 0 * Os_TE_267876 Os_TE_267876 Chr5 2105856 2105855 - MPING 430 0.0007 (2/2974) 0 * Os_TE_267877 Os_TE_267872 Chr5 2103557 2103558 + ORSgTETNOOT00908 242 0.0010 (3/2994) 0 * Os_TE_267871 Os_TE_267871 Chr5 2103553 2103552 + ORSgTETNOOT01219 231 0.0010 (3/2996) 0 * Os_TE_267872 Os_TE_267858 Chr5 2092300 2092299 + ORSiTERT00200069 6058 0.0003 (1/2997) 0 * * Os_TE_267849 Chr5 2087235 2087236 + ORSgTETNOOT00908 242 0.0323 (86/2666) 0 * * Os_TE_267848 Chr5 2087036 2087035 + CASTAWAY-3 314 0.3341 (889/2661) 0 * * Os_TE_267838 Chr5 2078774 2078775 - COPI2_LTR 4733 0.0003 (1/2984) 0 * * Os_TE_267837 Chr5 2078072 2078073 + RETROSAT4_LTR 13504 0.0277 (82/2957) 0 * Os_TE_267836 Os_TE_267836 Chr5 2078068 2078067 - SZ-35LTR 3853 0.0268 (80/2983) 0 * Os_TE_267837 Os_TE_267832 Chr5 2077112 2077113 + CLOUD-3 550 0.0020 (6/2992) 0 * * Os_TE_267814 Chr5 2063533 2063534 + RIREX_LTR 8828 0.0010 (3/2996) 0 * Os_TE_267813 Os_TE_267813 Chr5 2063529 2063528 - RIREX_LTR 8828 0.0010 (3/2995) 0 * Os_TE_267814 Os_TE_267810 Chr5 2060724 2060725 + MuDR2_OS 6770 0.0007 (2/2974) 0 * Os_TE_267809 Os_TE_267809 Chr5 2060715 2060714 - MuDR2_OS 6770 0.0003 (1/2968) 0 * Os_TE_267810 Os_TE_267802 Chr5 2053245 2053246 + COWARD-2 350 0.5157 (1491/2891) 0 * Os_TE_267801 Os_TE_267801 Chr5 2053242 2053241 - COWARD 200 0.5237 (1525/2912) 0 * Os_TE_267802 Os_TE_267799 Chr5 2052652 2052651 + ORSgTEMT01701591 154 0.5229 (1527/2920) 0 * Os_TE_267798 Os_TE_267798 Chr5 2052649 2052650 - ORSgTEMT01700507 154 0.5365 (1588/2960) 0 * Os_TE_267799 Os_TE_267796 Chr5 2050775 2050776 - COPI2_LTR 4733 0.0003 (1/2996) 0 * * Os_TE_267792 Chr5 2050113 2050114 - SUSU 279 0.1697 (506/2981) 0 * Os_TE_267791 Os_TE_267791 Chr5 2050111 2050110 + ORSgTEMT05000092 279 0.1709 (508/2973) 0 * Os_TE_267792 Os_TE_267788 Chr5 2049868 2049436 - ORSgTEMT01800052 396 0.2648 (769/2904) 1 Intact Os_TE_267787 Os_TE_267787 Chr5 2049431 2049865 - ORSgTEMT01800105 452 0.2635 (783/2971) 1 Intact Os_TE_267788 Os_TE_267771 Chr5 2044832 2044833 + COPI2_LTR 4733 0.0093 (28/2997) 0 * Os_TE_267770 Os_TE_267770 Chr5 2044828 2044827 - COPI2_LTR 4733 0.0100 (30/2991) 0 * Os_TE_267771 Os_TE_267767 Chr5 2044601 2032390 - RIRE2_LTR 11306 0.2336 (696/2980) 1 Intact Os_TE_267747 Os_TE_267747 Chr5 2032390 2044601 - ORSgTERT00201216 11284 0.2326 (694/2984) 1 Intact Os_TE_267767 Os_TE_267740 Chr5 2031391 2031390 - ORSgTEMT01602467 227 0.0017 (5/2947) 0 * Os_TE_267739 Os_TE_267739 Chr5 2031388 2031389 + ORSgTEMT01602051 240 0.0014 (4/2961) 0 * Os_TE_267740 Os_TE_267737 Chr5 2030733 2030734 - RETROSAT4_LTR 13504 0.0024 (7/2963) 0 * Os_TE_267736 Os_TE_267736 Chr5 2030729 2030728 + RETROSAT4_LTR 13504 0.0020 (6/2978) 0 * Os_TE_267737 Os_TE_267731 Chr5 2030380 2030102 + ORSgTEMT05000092 279 0.4350 (1294/2975) 1 Intact Os_TE_267729 Os_TE_267729 Chr5 2030102 2030380 - SUSU 279 0.4327 (1288/2977) 1 Intact Os_TE_267731 Os_TE_267720 Chr5 2026874 2026875 - TYPEG 427 0.1367 (265/1939) 0 * * Os_TE_267719 Chr5 2026847 2021788 - ORSgTEMT01800105 452 0.3269 (740/2264) 1 Intact * Os_TE_267718 Chr5 2026559 2022996 - ORSiTETNOOT00216 3569 0.8737 (609/697) 1 Intact Os_TE_267716 Os_TE_267716 Chr5 2022996 2026556 + TWIFBIG 3567 0.8886 (702/790) 1 Intact Os_TE_267718 Os_TE_267712 Chr5 2020963 2020964 + AMYLTP 383 0.4578 (1317/2877) 0 * Os_TE_267711 Os_TE_267711 Chr5 2020955 2020954 - AMYLTP 383 0.4598 (1327/2886) 0 * Os_TE_267712 Os_TE_267710 Chr5 2020927 2020928 + COPI2_LTR 4733 0.0014 (4/2860) 0 * Os_TE_267709 Os_TE_267709 Chr5 2020923 2020922 - COPI2_LTR 4733 0.0015 (4/2728) 0 * Os_TE_267710 Os_TE_267708 Chr5 2020746 2020508 - ORSgTEMT01602413 239 0.5955 (764/1283) -1 Intact Os_TE_267706 Os_TE_267706 Chr5 2020508 2020746 - ORSgTEMT01602413 239 0.2853 (769/2695) 1 Intact Os_TE_267708 Os_TE_267704 Chr5 2019715 2019477 - ORSgTEMT01601493 303 0.4327 (1270/2935) 1 Intact Os_TE_267702 Os_TE_267702 Chr5 2019477 2019715 - ORSgTEMT01601493 303 0.4365 (1283/2939) 1 Intact Os_TE_267704 Os_TE_267701 Chr5 2019186 2019185 - ORSgTETNOOT01534 208 0.5734 (1687/2942) 0 * * Os_TE_267698 Chr5 2018292 2018139 - ORSgTEMT01702216 170 0.8237 (1318/1600) 1 Intact * Os_TE_267696 Chr5 2018080 2018079 + ORSgTEMT00500144 149 0.5619 (1620/2883) 0 * * Os_TE_267692 Chr5 2017097 2017098 - JOUZHENA 607 0.0641 (84/1310) 0 * * Os_TE_267684 Chr5 2011948 2011949 + ORSgTETNOOT00908 242 0.0003 (1/2888) 0 * * Os_TE_267675 Chr5 2007656 2007655 + ECR 394 0.5327 (1573/2953) 0 * Os_TE_267674 Os_TE_267674 Chr5 2007646 2007647 - ECR 394 0.5325 (1580/2967) 0 * Os_TE_267675 Os_TE_267669 Chr5 2005469 2005468 + ORSgTEMT00700017 386 0.0003 (1/2885) 0 * * Os_TE_267663 Chr5 2003871 2003872 + COWARD-3 221 0.1978 (592/2993) 0 * * Os_TE_267651 Chr5 1993327 1993328 - CLOUD 734 0.5332 (1581/2965) 0 * Os_TE_267650 Os_TE_267650 Chr5 1993319 1993318 - CLOUD 734 0.5325 (1582/2971) 0 * Os_TE_267651 Os_TE_267649 Chr5 1993183 1993184 - ORSgTETNOOT00754 253 0.2605 (775/2975) 0 * Os_TE_267648 Os_TE_267648 Chr5 1993181 1993180 + ORSgTETNOOT01998 254 0.2612 (777/2975) 0 * Os_TE_267649 Os_TE_267644 Chr5 1992537 1992538 + COPIA2-LTR_OS 6433 0.0044 (13/2973) 0 * Os_TE_267643 Os_TE_267643 Chr5 1992533 1992532 - COPIA2-LTR_OS 6433 0.0044 (13/2978) 0 * Os_TE_267644 Os_TE_267642 Chr5 1992316 1992317 - MUDRN1_OS 764 0.0367 (108/2940) 0 * Os_TE_267641 Os_TE_267641 Chr5 1992308 1992307 - MUDRN3_OS 903 0.0359 (106/2950) 0 * Os_TE_267642 Os_TE_267639 Chr5 1991227 1991226 + MERMITE18B 1306 0.0003 (1/2948) 0 * * Os_TE_267621 Chr5 1979859 1979860 - COPIA2-LTR_OS 6433 0.0007 (2/2993) 0 * Os_TE_267620 Os_TE_267620 Chr5 1979855 1979854 + COPIA2-LTR_OS 6433 0.0007 (2/2988) 0 * Os_TE_267621 Os_TE_267618 Chr5 1978295 1978296 + ORSgTETNOOT00792 273 0.0034 (10/2924) 0 * Os_TE_267617 Os_TE_267617 Chr5 1978294 1978293 - ORSgTETNOOT01607 258 0.0031 (9/2915) 0 * Os_TE_267618 Os_TE_267613 Chr5 1973825 1973826 - SZ-40LTR 2465 0.0157 (47/2995) 0 * Os_TE_267612 Os_TE_267612 Chr5 1973821 1973820 + GYPSY-A_LTR 8951 0.0150 (45/2997) 0 * Os_TE_267613 Os_TE_267567 Chr5 1932459 1932224 + ORSgTEMT01601219 235 0.8005 (2114/2641) 1 Intact * Os_TE_267546 Chr5 1925864 1925865 - STOWAWAY17_OS 259 0.0007 (2/2996) 0 * * Os_TE_267542 Chr5 1924434 1924435 - ORSiTERTOOT00441 4741 0.0003 (1/2998) 0 * Os_TE_267541 Os_TE_267541 Chr5 1924430 1924429 + ORSiTERTOOT00441 4741 0.0003 (1/2987) 0 * Os_TE_267542 Os_TE_267533 Chr5 1922921 1921518 + OSTE33 1012 0.1204 (359/2981) 1 Intact Os_TE_267532 Os_TE_267532 Chr5 1921518 1922921 + OSTE33 1012 0.1240 (371/2991) 1 Intact Os_TE_267533 Os_TE_267513 Chr5 1913472 1913473 + ORSgTEMT01600102 237 0.1807 (538/2978) 0 * * Os_TE_267512 Chr5 1913432 1913433 - COPIA2-LTR_OS 6433 0.0027 (8/2979) 0 * Os_TE_267511 Os_TE_267511 Chr5 1913428 1913427 + COPIA2-LTR_OS 6433 0.0027 (8/2948) 0 * Os_TE_267512 Os_TE_267510 Chr5 1912342 1913301 + CACTA-J 1159 0.8209 (2384/2904) 1 Intact * Os_TE_267500 Chr5 1906409 1906410 - COPIA2-LTR_OS 6433 0.0007 (2/2975) 0 * * Os_TE_267498 Chr5 1906318 1906319 + COPIA2-LTR_OS 6433 0.0003 (1/2981) 0 * Os_TE_267497 Os_TE_267497 Chr5 1906314 1906313 - COPIA2-LTR_OS 6433 0.0003 (1/2960) 0 * Os_TE_267498 Os_TE_267496 Chr5 1905737 1905736 - ORSgTEMT00900892 250 0.0017 (5/2979) 0 * Os_TE_267495 Os_TE_267495 Chr5 1905733 1905734 - ORSgTEMT00901723 248 0.0017 (5/2937) 0 * Os_TE_267496 Os_TE_267480 Chr5 1903057 1902868 - ORSgTETNOOT00249 199 0.8204 (2330/2840) 1 Intact * Os_TE_267470 Chr5 1901476 1901477 - COPIA2-LTR_OS 6433 0.0154 (46/2994) 0 * Os_TE_267469 Os_TE_267469 Chr5 1901472 1901471 + COPIA2-LTR_OS 6433 0.0147 (44/2996) 0 * Os_TE_267470 Os_TE_267443 Chr5 1883606 1883607 + SETARIA 1402 0.1511 (407/2694) 0 * Os_TE_267442 Os_TE_267442 Chr5 1883598 1883597 - SETARIA1 1293 0.1599 (436/2727) 0 * Os_TE_267443 Os_TE_267438 Chr5 1881284 1881285 + MPING 430 0.0003 (1/2993) 0 * Os_TE_267437 Os_TE_267437 Chr5 1881282 1881281 - MPING 430 0.0003 (1/2994) 0 * Os_TE_267438 Os_TE_267432 Chr5 1880194 1880195 + ORSgTETNOOT00032 218 0.1571 (451/2870) 0 * * Os_TE_267423 Chr5 1877742 1877741 - STOWAWAY44_OS 240 0.0031 (9/2945) 0 * Os_TE_267422 Os_TE_267422 Chr5 1877739 1877740 + STOWAWAY44_OS 240 0.0034 (10/2939) 0 * Os_TE_267423 Os_TE_267417 Chr5 1876627 1876628 + AMYLTP 383 0.0040 (12/2984) 0 * Os_TE_267416 Os_TE_267416 Chr5 1876619 1876618 - AMYLTP 383 0.0040 (12/2984) 0 * Os_TE_267417 Os_TE_267415 Chr5 1876394 1876395 + TOS17LTR 138 0.0230 (69/2995) 0 * Os_TE_267414 Os_TE_267414 Chr5 1876390 1876389 - TOS17LTR 138 0.0250 (75/2998) 0 * Os_TE_267415 Os_TE_267407 Chr5 1874644 1874645 + NDNA1TNA_OS 334 0.0269 (79/2936) 0 * * Os_TE_267404 Chr5 1870906 1870759 + STOWAWAY47_OS 148 0.8408 (2508/2983) 1 Intact Os_TE_267403 Os_TE_267403 Chr5 1870759 1870906 + TREP220 109 0.8394 (2503/2982) 1 Intact Os_TE_267404 Os_TE_267389 Chr5 1862920 1862921 - SC-3_LTR 5748 0.0003 (1/2989) 0 * Os_TE_267388 Os_TE_267388 Chr5 1862916 1862915 + ORSiTERTOOT00296 5553 0.0003 (1/2990) 0 * Os_TE_267389 Os_TE_267386 Chr5 1860644 1860645 + ORSgTETNOOT01930 140 0.0003 (1/2988) 0 * * Os_TE_267384 Chr5 1859265 1859033 - ORSgTEMT01600559 234 0.7589 (362/477) -1 Intact Os_TE_267382 Os_TE_267382 Chr5 1859033 1859265 - ORSgTEMT01600520 239 0.1264 (371/2935) 1 Intact Os_TE_267384 Os_TE_267374 Chr5 1858116 1858117 + NDNA1TNA_OS 334 0.8798 (2569/2920) 0 * * Os_TE_267367 Chr5 1856938 1856709 + TREP215 239 0.2939 (288/980) 1 Intact * Os_TE_267361 Chr5 1856038 1856037 + ORSgTEMT00900266 245 0.8814 (2586/2934) 0 * * Os_TE_267356 Chr5 1855599 1855600 - MERMITED 1572 0.0026 (1/384) 0 * Os_TE_267355 Os_TE_267355 Chr5 1855597 1855596 - MERMITED 1572 0.8767 (2538/2895) 0 * Os_TE_267356 Os_TE_267336 Chr5 1845554 1845553 + DITAILA 257 0.0106 (4/376) 0 * * Os_TE_267335 Chr5 1845421 1845422 + SETARIA2 1142 0.0009 (2/2269) 0 * * Os_TE_267332 Chr5 1843922 1843923 + COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_267331 Os_TE_267331 Chr5 1843918 1843917 - COPI2_LTR 4733 0.0003 (1/2989) 0 * Os_TE_267332 Os_TE_267324 Chr5 1841852 1841853 - MDM2 312 0.8820 (2630/2982) 0 * * Os_TE_267302 Chr5 1830449 1830448 + STOWAWAY51_OS 246 0.8813 (2622/2975) 0 * * Os_TE_267301 Chr5 1830133 1830134 - STOWAWAY51_OS 246 0.8691 (2330/2681) 0 * * Os_TE_267300 Chr5 1828271 1828408 + STOWAWAY47_OS 148 0.5997 (1796/2995) 1 Intact * Os_TE_267296 Chr5 1827615 1827943 + STOWAWAY15-2_OS 145 0.7167 (1786/2492) 1 Intact * Os_TE_267295 Chr5 1827405 1827404 + OSTE18 129 0.1296 (261/2014) 0 * * Os_TE_267294 Chr5 1827142 1827143 - SZ-7A_LTR 11400 0.1420 (291/2049) 0 * * Os_TE_267290 Chr5 1825767 1825530 + ORSgTEMT01602051 240 0.8675 (1781/2053) 1 Intact Os_TE_267288 Os_TE_267288 Chr5 1825529 1825767 - TREP215 239 0.8665 (1765/2037) 1 Intact Os_TE_267290 Os_TE_267287 Chr5 1825458 1825457 - ORSgTEMT01602413 239 0.1342 (274/2041) 0 * * Os_TE_267284 Chr5 1825326 1824073 + SZLTR 1249 0.1760 (351/1994) 1 Intact * Os_TE_267265 Chr5 1810015 1810016 + STOWAWAY21_OS 243 0.0849 (241/2840) 0 * * Os_TE_267255 Chr5 1805938 1805939 + RETROSAT4_LTR 13504 0.0017 (5/2882) 0 * * Os_TE_267253 Chr5 1804248 1804249 + RIRE2_LTR 11306 0.0010 (3/2981) 0 * * Os_TE_267251 Chr5 1803482 1802870 + DS-RICE2N 613 0.1163 (346/2976) 1 Intact Os_TE_267250 Os_TE_267250 Chr5 1802870 1803482 - DS-RICE2N 613 0.1191 (350/2939) 1 Intact Os_TE_267251 Os_TE_267247 Chr5 1802320 1797992 - SZ-48LTR 3632 0.1184 (351/2965) 1 Intact * Os_TE_267237 Chr5 1796857 1796856 + TREP219 104 0.1357 (354/2608) 0 * Os_TE_267236 Os_TE_267236 Chr5 1796854 1796855 + STOWAWAY43_OS 233 0.1146 (339/2959) 0 * Os_TE_267237 Os_TE_267217 Chr5 1791311 1791310 - ORSgTETN00200001 10994 0.0007 (2/2731) 0 * * Os_TE_267214 Chr5 1791094 1791095 - ORSgTETN00200001 10994 0.3613 (1005/2782) 0 * Os_TE_267213 Os_TE_267213 Chr5 1791092 1791091 + SPMLIKE 10989 0.3583 (977/2727) 0 * Os_TE_267214 Os_TE_267210 Chr5 1790612 1790611 - TYPEM 227 0.0011 (3/2835) 0 * * Os_TE_267206 Chr5 1790127 1790128 + SZ-48LTR 3632 0.0282 (78/2768) 0 * Os_TE_267205 Os_TE_267205 Chr5 1790123 1790122 - SZ-48LTR 3632 0.0293 (81/2765) 0 * Os_TE_267206 Os_TE_267203 Chr5 1789143 1789144 - SPMLIKE 10989 0.0004 (1/2809) 0 * * Os_TE_267194 Chr5 1787065 1786902 - OSTE19 162 0.8374 (2482/2964) 1 Intact * Os_TE_267186 Chr5 1784648 1784649 + RETROSAT2LTR 12796 0.1317 (205/1557) 0 * * Os_TE_267173 Chr5 1779800 1779799 + MPING 430 0.0004 (1/2588) 0 * * Os_TE_267170 Chr5 1779415 1779414 + STOWAWAY43_OS 233 0.0007 (2/2738) 0 * * Os_TE_267160 Chr5 1778167 1766827 - ORSgTETN00200001 10994 0.1231 (359/2916) 1 Intact Os_TE_267153 Os_TE_267153 Chr5 1766828 1778167 + SPMLIKE 10989 0.1406 (403/2866) 1 Intact Os_TE_267160 Os_TE_267152 Chr5 1766362 1766361 + TRUNCATOR 2918 0.3236 (963/2976) 0 * Os_TE_267151 Os_TE_267151 Chr5 1766361 1766362 - TRUNCATOR 2918 0.2898 (826/2850) 0 * Os_TE_267152 Os_TE_267150 Chr5 1766299 1766300 - ENSPM4_OS 11610 0.1306 (380/2909) 0 * * Os_TE_267147 Chr5 1765659 1764618 - CACTA-I 1124 0.8234 (2433/2955) 1 Intact Os_TE_267142 Os_TE_267142 Chr5 1764615 1765659 + CACTA-B 1103 0.8228 (2420/2941) 1 Intact Os_TE_267147 Os_TE_267138 Chr5 1763241 1763242 + SZ-9LTR 965 0.1482 (386/2604) 0 * Os_TE_267137 Os_TE_267137 Chr5 1763237 1763236 - SZ-9LTR 965 0.1270 (378/2976) 0 * Os_TE_267138 Os_TE_267132 Chr5 1760599 1760600 - OSLINE1-2 7128 0.0003 (1/2972) 0 * * Os_TE_267125 Chr5 1760162 1760463 + ORSgTEMT00101674 340 0.3136 (916/2921) 1 Intact * Os_TE_267116 Chr5 1757683 1757684 - AMYLTP 383 0.0014 (4/2890) 0 * Os_TE_267115 Os_TE_267115 Chr5 1757675 1757674 + AMYLTP 383 0.0019 (5/2625) 0 * Os_TE_267116 Os_TE_267114 Chr5 1757170 1757169 + ORSgTETNOOT01834 251 0.6569 (1859/2830) 0 * * Os_TE_267113 Chr5 1756592 1756439 - ORSgTEMT01701488 202 0.3672 (915/2492) 1 Intact Os_TE_267112 Os_TE_267112 Chr5 1756439 1756587 - ORSgTEMT01701266 154 0.3373 (909/2695) 1 Intact Os_TE_267113 Os_TE_267110 Chr5 1754919 1754920 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_267109 Os_TE_267109 Chr5 1754915 1754914 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_267110 Os_TE_267099 Chr5 1749882 1749881 + ORSgTETNOOT00908 242 0.0003 (1/2935) 0 * * Os_TE_267086 Chr5 1739033 1739034 - OLO24 345 0.0003 (1/2955) 0 * Os_TE_267085 Os_TE_267085 Chr5 1739031 1739030 + OLO24 345 0.0003 (1/2962) 0 * Os_TE_267086 Os_TE_267083 Chr5 1738420 1738421 + ORSgTETNOOT00908 242 0.0003 (1/2978) 0 * * Os_TE_267067 Chr5 1730883 1730884 + RIREX_LTR 8828 0.0003 (1/2991) 0 * Os_TE_267066 Os_TE_267066 Chr5 1730879 1730878 - RIREX_LTR 8828 0.0003 (1/2992) 0 * Os_TE_267067 Os_TE_267045 Chr5 1717446 1717298 + ORSgTEMT00501505 149 0.4200 (961/2288) 1 Intact Os_TE_267043 Os_TE_267043 Chr5 1717298 1717446 + ORSgTEMT00501455 153 0.4275 (946/2213) 1 Intact Os_TE_267045 Os_TE_267040 Chr5 1716211 1717242 - ORSiTERTOOT00270 8019 0.3325 (970/2917) 1 Intact * Os_TE_267032 Chr5 1713773 1713772 - RETRO2_LTR 12874 0.5879 (1753/2982) 0 * * Os_TE_267031 Chr5 1713343 1713342 + F118 179 0.6871 (2055/2991) 0 * * Os_TE_267030 Chr5 1713183 1713184 + SINE1OS 127 0.0305 (91/2979) 0 * * Os_TE_267022 Chr5 1712303 1712541 - ORSgTEMT01602413 239 0.3256 (955/2933) 1 Intact * Os_TE_267019 Chr5 1710823 1710824 + AMYLTP 383 0.0587 (87/1481) -1 * * Os_TE_266973 Chr5 1686150 1685663 + CLOUD-6 508 0.4503 (1178/2616) 1 Intact Os_TE_266971 Os_TE_266971 Chr5 1685663 1686150 - CLOUD-6 508 0.4663 (1244/2668) 1 Intact Os_TE_266973 Os_TE_266969 Chr5 1685135 1685136 - COPI2_LTR 4733 0.0852 (245/2874) 0 * Os_TE_266968 Os_TE_266968 Chr5 1685131 1685130 + COPI2_LTR 4733 0.0728 (213/2927) 0 * Os_TE_266969 Os_TE_266964 Chr5 1684516 1684608 - ORSiTEMT00200004 104 0.6948 (1266/1822) 0.86 Intact * Os_TE_266958 Chr5 1683630 1683631 + SEVERIN-2 1952 0.0851 (252/2960) 0 * * Os_TE_266956 Chr5 1683103 1683102 + SZ-67LTR 1540 0.0017 (5/2984) 0 * * Os_TE_266948 Chr5 1680943 1680944 - RIREX_LTR 8828 0.0003 (1/2980) 0 * Os_TE_266947 Os_TE_266947 Chr5 1680939 1680938 + RIREX_LTR 8828 0.0003 (1/2983) 0 * Os_TE_266948 Os_TE_266931 Chr5 1672151 1672152 - RETROSAT2LTR 12796 0.0003 (1/2992) 0 * Os_TE_266930 Os_TE_266930 Chr5 1672149 1672148 + RETROSAT2LTR 12796 0.0003 (1/2989) 0 * Os_TE_266931 Os_TE_266929 Chr5 1672025 1672026 - RETROSAT2LTR 12796 0.0003 (1/2999) 0 * * Os_TE_266911 Chr5 1669107 1669108 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * * Os_TE_266908 Chr5 1668897 1668896 - COPI2_LTR 4733 0.0003 (1/2959) 0 * * Os_TE_266892 Chr5 1659695 1659696 + ORSgTEMT01601591 242 0.0003 (1/2998) 0 * * Os_TE_266861 Chr5 1648338 1648337 - STOWAWAY11_OS 292 0.0007 (2/2827) 0 * * Os_TE_266860 Chr5 1648022 1648023 - AMYLTP 383 0.5549 (1638/2952) 0 * Os_TE_266859 Os_TE_266859 Chr5 1648014 1648013 + AMYLTP 383 0.5427 (1577/2906) 0 * Os_TE_266860 Os_TE_266858 Chr5 1646373 1646372 + JINHUA 479 0.0004 (1/2704) 0 * * Os_TE_266844 Chr5 1641085 1641086 - TRUNCATOR2_LTR 2904 0.5841 (1385/2371) 0 * Os_TE_266843 Os_TE_266843 Chr5 1641081 1641080 + ORSiCMCM00100019 2717 0.6363 (1718/2700) 0 * Os_TE_266844 Os_TE_266707 Chr5 1575251 1575252 + RIREX_LTR 8828 0.0003 (1/2988) 0 * Os_TE_266706 Os_TE_266706 Chr5 1575247 1575246 - RIREX_LTR 8828 0.0003 (1/2983) 0 * Os_TE_266707 Os_TE_266697 Chr5 1573774 1573773 + MPING 430 0.0003 (1/2965) 0 * * Os_TE_266691 Chr5 1572061 1572062 - ORSgTETN00200001 10994 0.0003 (1/2994) 0 * Os_TE_266690 Os_TE_266690 Chr5 1572059 1572058 + SPMLIKE 10989 0.0003 (1/2995) 0 * Os_TE_266691 Os_TE_266656 Chr5 1562821 1562822 + COPI2_LTR 4733 0.0003 (1/2863) 0 * Os_TE_266655 Os_TE_266655 Chr5 1562817 1562816 - COPI2_LTR 4733 0.0004 (1/2855) 0 * Os_TE_266656 Os_TE_266647 Chr5 1558402 1558403 + COPIA2-LTR_OS 6433 0.0007 (2/2721) 0 * * Os_TE_266625 Chr5 1545559 1545560 + COPI2_LTR 4733 0.0003 (1/2988) 0 * * Os_TE_266623 Chr5 1544708 1544709 - COPI2_LTR 4733 0.0010 (3/2990) 0 * Os_TE_266622 Os_TE_266622 Chr5 1544704 1544703 + COPI2_LTR 4733 0.0007 (2/2989) 0 * Os_TE_266623 Os_TE_266620 Chr5 1544622 1544623 + MPING 430 0.0003 (1/2994) 0 * Os_TE_266619 Os_TE_266619 Chr5 1544620 1544619 - MPING 430 0.0003 (1/2994) 0 * Os_TE_266620 Os_TE_266618 Chr5 1544298 1544297 + STOWAWAY44_OS 240 0.0020 (6/2998) 0 * Os_TE_266617 Os_TE_266617 Chr5 1544295 1544296 - STOWAWAY44_OS 240 0.0020 (6/2997) 0 * Os_TE_266618 Os_TE_266610 Chr5 1539197 1539198 - COPIA2-LTR_OS 6433 0.0017 (5/2998) 0 * Os_TE_266609 Os_TE_266609 Chr5 1539193 1539192 + COPIA2-LTR_OS 6433 0.0017 (5/2995) 0 * Os_TE_266610 Os_TE_266605 Chr5 1535423 1535424 - COPI2_LTR 4733 0.0003 (1/2993) 0 * Os_TE_266604 Os_TE_266604 Chr5 1535419 1535418 + COPI2_LTR 4733 0.0003 (1/2990) 0 * Os_TE_266605 Os_TE_266602 Chr5 1534107 1534108 - SZ-22_LTR 4403 0.0003 (1/2987) 0 * * Os_TE_266527 Chr5 1491670 1491671 - SZ-48LTR 3632 0.0534 (158/2957) 0 * * Os_TE_266522 Chr5 1491174 1491601 + ORSgTEMT00300122 416 0.4143 (1240/2993) 1 Intact * Os_TE_266520 Chr5 1489556 1489557 - MuDR3_OS 8604 0.0111 (33/2983) 0 * Os_TE_266519 Os_TE_266519 Chr5 1489548 1489547 + MuDR3_OS 8604 0.0114 (34/2985) 0 * Os_TE_266520 Os_TE_266518 Chr5 1489300 1489301 - INDITTO 263 0.0084 (25/2975) 0 * * Os_TE_266513 Chr5 1487882 1487883 + TRUNCATOR2_LTR 2904 0.0004 (1/2751) 0 * * Os_TE_266502 Chr5 1485793 1485794 - MUDRN1_OS 764 0.0559 (149/2667) 0 * * Os_TE_266500 Chr5 1485358 1485359 + MUDRN1_OS 764 0.0567 (154/2716) 0 * Os_TE_266499 Os_TE_266499 Chr5 1485350 1485349 - MUDRN1_OS 764 0.0518 (140/2702) 0 * Os_TE_266500 Os_TE_266495 Chr5 1483731 1483732 + OSTE15 1168 0.0504 (147/2918) 0 * * Os_TE_266477 Chr5 1476220 1476219 + TRUNCATOR 2918 0.0033 (10/2996) 0 * * Os_TE_266475 Chr5 1475381 1475382 + COPI1_LTR 4721 0.0014 (4/2851) 0 * * Os_TE_266470 Chr5 1473979 1473980 + INDITTO 263 0.0007 (2/2854) 0 * * Os_TE_266438 Chr5 1457687 1457688 + INDITTO 263 0.2854 (855/2996) 0 * Os_TE_266437 Os_TE_266437 Chr5 1457685 1457684 - INDITTO 263 0.2865 (858/2995) 0 * Os_TE_266438 Os_TE_266425 Chr5 1451068 1451067 - SZ-9LTR 965 0.0017 (5/2996) 0 * * Os_TE_266395 Chr5 1443096 1442774 - NDNA1TNA_OS 334 0.4174 (1211/2901) 1 Intact * Os_TE_266385 Chr5 1440637 1440638 + MPING 430 0.0024 (7/2922) 0 * Os_TE_266384 Os_TE_266384 Chr5 1440635 1440634 - MPING 430 0.0021 (6/2901) 0 * Os_TE_266385 Os_TE_266350 Chr5 1421426 1421427 - ORSgTETNOOT00477 252 0.0552 (165/2989) 0 * Os_TE_266349 Os_TE_266349 Chr5 1421421 1421420 - ORSgTETNOOT00754 253 0.0547 (163/2982) 0 * Os_TE_266350 Os_TE_266330 Chr5 1409015 1409016 + ORSgTEMT00500512 153 0.0003 (1/2987) 0 * * Os_TE_266315 Chr5 1402065 1402064 + ORSiTERTOOT00296 5553 0.0007 (2/2987) 0 * * Os_TE_266299 Chr5 1389334 1386836 - ORSiTETNOOT00214 2499 0.2243 (516/2300) -1 Intact Os_TE_266297 Os_TE_266297 Chr5 1386836 1389332 + TWIF 586 0.3762 (992/2637) 1 Intact Os_TE_266299 Os_TE_266244 Chr5 1355317 1355316 + SZ-62LTR 3649 0.2515 (752/2990) 0 * * Os_TE_266222 Chr5 1322320 1337187 - SPMLIKE 10989 0.6946 (1708/2459) 1 Intact * Os_TE_266190 Chr5 1313886 1313887 - COPIA2-LTR_OS 6433 0.0003 (1/2977) 0 * Os_TE_266189 Os_TE_266189 Chr5 1313882 1313881 + COPIA2-LTR_OS 6433 0.0003 (1/2976) 0 * Os_TE_266190 Os_TE_266185 Chr5 1312532 1312533 - RIRE2_LTR 11306 0.0003 (1/2987) 0 * * Os_TE_266184 Chr5 1312504 1312505 - ORSgTERT00201216 11284 0.0257 (77/2995) 0 * Os_TE_266183 Os_TE_266183 Chr5 1312500 1312499 - RIRE2_LTR 11306 0.0260 (78/2997) 0 * Os_TE_266184 Os_TE_266170 Chr5 1305815 1302916 + ORSiCMCM00100019 2717 0.5183 (1445/2788) 1 Intact Os_TE_266164 Os_TE_266164 Chr5 1302916 1305815 - TRUNCATOR2_LTR 2904 0.5534 (1637/2958) 1 Intact Os_TE_266170 Os_TE_266151 Chr5 1288613 1288281 + NDNA1TNA_OS 334 0.3440 (1022/2971) 1 Intact * Os_TE_266139 Chr5 1285537 1285538 - CASTAWAY 364 0.1472 (440/2990) 0 * Os_TE_266138 Os_TE_266138 Chr5 1285534 1285533 + ORSgTEMT00600229 360 0.1478 (442/2990) 0 * Os_TE_266139 Os_TE_266119 Chr5 1272986 1272987 - RIREX_LTR 8828 0.0003 (1/2993) 0 * * Os_TE_266109 Chr5 1270220 1270221 + STOWAWAY46_OS 154 0.0010 (3/2990) 0 * * Os_TE_266084 Chr5 1253630 1253631 - COPIA2-LTR_OS 6433 0.0003 (1/2982) 0 * Os_TE_266083 Os_TE_266083 Chr5 1253626 1253625 + COPIA2-LTR_OS 6433 0.0003 (1/2979) 0 * Os_TE_266084 Os_TE_266069 Chr5 1251244 1251243 + ORSgTEMT00100531 325 0.1253 (374/2984) 0 * Os_TE_266068 Os_TE_266068 Chr5 1251229 1251230 + NDNA1TNA_OS 334 0.0262 (71/2713) 0 * Os_TE_266069 Os_TE_266041 Chr5 1246695 1246694 - COPI2_LTR 4733 0.0007 (2/2998) 0 * * Os_TE_266037 Chr5 1242354 1242355 + TELIA 141 0.0023 (7/2993) 0 * Os_TE_266036 Os_TE_266036 Chr5 1242346 1242345 - TELIA 141 0.0023 (7/2993) 0 * Os_TE_266037 Os_TE_266015 Chr5 1232916 1232915 + ORSgTETNOOT00908 242 0.0037 (11/2982) 0 * * Os_TE_266012 Chr5 1231288 1231289 - COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_266011 Os_TE_266011 Chr5 1231284 1231283 + COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_266012 Os_TE_266007 Chr5 1221057 1221058 + ORSiTERTOOT00034 791 0.0003 (1/2906) 0 * * Os_TE_265992 Chr5 1203385 1203386 + STOWAWAY51_OS 246 0.0003 (1/2895) 0 * * Os_TE_265986 Chr5 1201199 1201200 - RETROSAT2LTR 12796 0.0003 (1/2958) 0 * * Os_TE_265973 Chr5 1193759 1193760 - CLOUD-7 495 0.0003 (1/2961) 0 * Os_TE_265972 Os_TE_265972 Chr5 1193753 1193752 - CLOUD-7 495 0.0003 (1/2964) 0 * Os_TE_265973 Os_TE_265971 Chr5 1190579 1190578 + Cassandra_OS-LTR 764 0.0008 (1/1207) 0 * * Os_TE_265965 Chr5 1183562 1183563 - SC-8_LTR 4951 0.0003 (1/2981) 0 * Os_TE_265964 Os_TE_265964 Chr5 1183558 1183557 + SC-8_LTR 4951 0.0003 (1/2985) 0 * Os_TE_265965 Os_TE_265947 Chr5 1177525 1177526 + ORSgTEMT01601627 228 0.0003 (1/2978) 0 * * Os_TE_265922 Chr5 1171305 1171304 + OsSN3 183 0.0007 (2/2940) 0 * * Os_TE_265917 Chr5 1168204 1168205 - TYPEM 227 0.0004 (1/2789) 0 * * Os_TE_265875 Chr5 1148853 1148854 - CLOUD 734 0.0416 (124/2982) 0 * Os_TE_265874 Os_TE_265874 Chr5 1148845 1148844 - CLOUD 734 0.0394 (117/2966) 0 * Os_TE_265875 Os_TE_265836 Chr5 1125988 1125987 + ORSgTETNOOT00908 242 0.0164 (49/2988) 0 * * Os_TE_265814 Chr5 1119297 1119298 - SZ-62LTR 3649 0.0017 (5/2979) 0 * Os_TE_265813 Os_TE_265813 Chr5 1119293 1119292 + SZ-62LTR 3649 0.0017 (5/2973) 0 * Os_TE_265814 Os_TE_265806 Chr5 1115046 1115047 - MuDR4_OS 7610 0.0929 (278/2992) 0 * * Os_TE_265805 Chr5 1114761 1114762 + DS-RICE2N 613 0.0174 (52/2984) 0 * Os_TE_265804 Os_TE_265804 Chr5 1114754 1114753 - DS-RICE2N 613 0.0178 (53/2985) 0 * Os_TE_265805 Os_TE_265782 Chr5 1111038 1111039 + ORSgTETNOOT02316 263 0.2470 (738/2988) 0 * Os_TE_265781 Os_TE_265781 Chr5 1111036 1111035 - INDITTO 263 0.2442 (728/2981) 0 * Os_TE_265782 Os_TE_265778 Chr5 1110490 1110491 + ORSgTEMT00600192 355 0.0003 (1/2949) 0 * * Os_TE_265777 Chr5 1110429 1110428 + ORSgTEMT01601122 212 0.3483 (1033/2966) 0 * Os_TE_265776 Os_TE_265776 Chr5 1110428 1110429 + STOWAWAY21_OS 243 0.3465 (1026/2961) 0 * Os_TE_265777 Os_TE_265774 Chr5 1108682 1108683 + COPI2_LTR 4733 0.0003 (1/2974) 0 * * Os_TE_265763 Chr5 1106634 1106635 + STOWAWAY51_OS 246 0.1751 (521/2976) 0 * * Os_TE_265757 Chr5 1103897 1103896 - ORSgTEMT00700002 381 0.0003 (1/2996) 0 * * Os_TE_265711 Chr5 1072829 1072830 + RETRO2_LTR 12874 0.0050 (15/2996) 0 * Os_TE_265710 Os_TE_265710 Chr5 1072825 1072824 - RETRO2_LTR 12874 0.0053 (16/2997) 0 * Os_TE_265711 Os_TE_265690 Chr5 1068766 1068767 - RIRE5-LTR_OS 6427 0.0066 (18/2717) 0 * Os_TE_265689 Os_TE_265689 Chr5 1068759 1068758 + RIRE5-LTR_OS 6427 0.0011 (3/2685) 0 * Os_TE_265690 Os_TE_265688 Chr5 1068367 1068368 - NDNA1TNA_OS 334 0.0541 (160/2956) 0 * Os_TE_265687 Os_TE_265687 Chr5 1068365 1068364 + NDNA1TNA_OS 334 0.0544 (161/2962) 0 * Os_TE_265688 Os_TE_265671 Chr5 1057316 1057317 + ORSgTERTOOT00009 12852 0.0003 (1/2988) 0 * Os_TE_265670 Os_TE_265670 Chr5 1057312 1057311 - RETRO2_LTR 12874 0.0003 (1/2989) 0 * Os_TE_265671 Os_TE_265650 Chr5 1050010 1050011 - MuDR4_OS 7610 0.0588 (170/2890) 0 * * Os_TE_265647 Chr5 1045570 1045571 + INDITTO 263 0.0003 (1/2998) 0 * Os_TE_265646 Os_TE_265646 Chr5 1045568 1045567 - INDITTO 263 0.0003 (1/2999) 0 * Os_TE_265647 Os_TE_265598 Chr5 1024655 1024656 - RIREX_LTR 8828 0.0007 (2/2995) 0 * Os_TE_265597 Os_TE_265597 Chr5 1024651 1024650 + RIREX_LTR 8828 0.0007 (2/2996) 0 * Os_TE_265598 Os_TE_265589 Chr5 1023431 1022838 - JOUZHENA 607 0.5810 (1674/2881) 1 Intact Os_TE_265588 Os_TE_265588 Chr5 1022838 1023431 + JOUZHENA 607 0.5631 (1451/2577) 1 Intact Os_TE_265589 Os_TE_265570 Chr5 1018105 1018104 + UNIQUE 158 0.0017 (5/2994) 0 * * Os_TE_265514 Chr5 986577 986578 - SC-3_LTR 5748 0.0007 (2/2984) 0 * Os_TE_265513 Os_TE_265513 Chr5 986573 986572 + ORSiTERTOOT00296 5553 0.0007 (2/2967) 0 * Os_TE_265514 Os_TE_265512 Chr5 986249 986250 - ORSgTEMT00600085 364 0.0060 (18/2987) 0 * Os_TE_265511 Os_TE_265511 Chr5 986247 986246 + ORSgTEMT00600502 360 0.0060 (18/2993) 0 * Os_TE_265512 Os_TE_265504 Chr5 983612 983613 - TYPEU1 380 0.0052 (15/2883) 0 * Os_TE_265503 Os_TE_265503 Chr5 983604 983603 + TYPEU4 402 0.0054 (16/2961) 0 * Os_TE_265504 Os_TE_265502 Chr5 983583 983584 - ENSPM4_OS 11610 0.3252 (958/2946) 0 * * Os_TE_265498 Chr5 982933 982934 + INDITTO 263 0.0054 (16/2987) 0 * Os_TE_265497 Os_TE_265497 Chr5 982931 982930 - INDITTO 263 0.0060 (18/2985) 0 * Os_TE_265498 Os_TE_265485 Chr5 980521 980522 + RETRO1_LTR 8314 0.0753 (166/2205) 0 * * Os_TE_265470 Chr5 972225 972224 + ORSgTERT00201382 11280 0.0035 (10/2832) 0 * * Os_TE_265462 Chr5 971093 971092 - INDITTO 263 0.0034 (10/2963) 0 * Os_TE_265461 Os_TE_265461 Chr5 971085 971086 + INDITTO 263 0.0027 (8/2973) 0 * Os_TE_265462 Os_TE_265440 Chr5 967758 967757 + ORSgTEMT01601122 212 0.0003 (1/2943) 0 * * Os_TE_265438 Chr5 967615 967616 + ORSgTEMT00101341 314 0.3086 (911/2952) 0 * Os_TE_265437 Os_TE_265437 Chr5 967614 967613 - NDNA1TNA_OS 334 0.2969 (870/2930) 0 * Os_TE_265438 Os_TE_265420 Chr5 965840 965841 + RETROSAT3_LTR 11537 0.0044 (13/2971) 0 * Os_TE_265419 Os_TE_265419 Chr5 965836 965835 - RETROSAT3_LTR 11537 0.0054 (16/2973) 0 * Os_TE_265420 Os_TE_265418 Chr5 965670 965669 + ORSgTEMT01601591 242 0.0084 (25/2980) 0 * Os_TE_265417 Os_TE_265417 Chr5 965664 965665 + STOWAWAY51_OS 246 0.0094 (28/2981) 0 * Os_TE_265418 Os_TE_265416 Chr5 965621 965622 - OLO24 345 0.0030 (9/2979) 0 * Os_TE_265415 Os_TE_265415 Chr5 965619 965618 + OLO24 345 0.0034 (10/2974) 0 * Os_TE_265416 Os_TE_265413 Chr5 965173 965174 - STOWAWAY51_OS 246 0.0003 (1/2977) 0 * * Os_TE_265410 Chr5 964093 964092 + NDNA1TNA_OS 334 0.2114 (633/2995) 0 * Os_TE_265409 Os_TE_265409 Chr5 964088 964089 - ORSgTEMT00100799 337 0.2119 (635/2997) 0 * Os_TE_265410 Os_TE_265400 Chr5 962017 962016 - ORSiTERTOOT00035 413 0.0012 (1/807) 0 * * Os_TE_265395 Chr5 961312 961311 + ORSgTEMT01602181 239 0.0037 (11/2997) 0 * Os_TE_265394 Os_TE_265394 Chr5 961309 961310 - ORSgTEMT01601432 239 0.0033 (10/2997) 0 * Os_TE_265395 Os_TE_265377 Chr5 955951 955952 + MuDR3_OS 8604 0.0074 (20/2711) 0 * Os_TE_265376 Os_TE_265376 Chr5 955943 955942 - MuDR3_OS 8604 0.0015 (4/2713) 0 * Os_TE_265377 Os_TE_265359 Chr5 939967 939966 - INDITTO 263 0.0020 (6/2972) 0 * * Os_TE_265351 Chr5 938369 938368 - STOWAWAY51_OS 246 0.0024 (7/2977) 0 * Os_TE_265350 Os_TE_265350 Chr5 938363 938364 + STOWAWAY51_OS 246 0.0024 (7/2973) 0 * Os_TE_265351 Os_TE_265309 Chr5 920298 920299 - COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_265308 Os_TE_265308 Chr5 920294 920293 + COPI2_LTR 4733 0.0003 (1/2992) 0 * Os_TE_265309 Os_TE_265306 Chr5 919013 919014 + RIREX_LTR 8828 0.0003 (1/2962) 0 * Os_TE_265305 Os_TE_265305 Chr5 919009 919008 - RIREX_LTR 8828 0.0003 (1/2969) 0 * Os_TE_265306 Os_TE_265298 Chr5 914620 914621 - F569 228 0.0051 (15/2930) 0 * Os_TE_265297 Os_TE_265297 Chr5 914618 914617 + F569 228 0.0062 (18/2923) 0 * Os_TE_265298 Os_TE_265286 Chr5 912686 912685 - SZ-43LTR 4039 0.3051 (899/2947) 0 * * Os_TE_265257 Chr5 903527 903528 + COPI2_LTR 4733 0.0047 (14/2967) 0 * Os_TE_265256 Os_TE_265256 Chr5 903523 903522 - COPI2_LTR 4733 0.0037 (11/2961) 0 * Os_TE_265257 Os_TE_265225 Chr5 893082 893081 + F770 284 0.2145 (588/2741) 0 * * Os_TE_265224 Chr5 892812 892813 - RIRE2_LTR 11306 0.0010 (3/2995) 0 * * Os_TE_265196 Chr5 876732 876733 - INDITTO 263 0.0812 (243/2994) 0 * Os_TE_265195 Os_TE_265195 Chr5 876730 876729 + ORSgTETNOOT02316 263 0.0832 (249/2994) 0 * Os_TE_265196 Os_TE_265175 Chr5 864114 864115 - SC-3_LTR 5748 0.0080 (24/2996) 0 * Os_TE_265174 Os_TE_265174 Chr5 864110 864109 + ORSiTERTOOT00296 5553 0.0080 (24/2995) 0 * Os_TE_265175 Os_TE_265167 Chr5 858030 858031 + ORSgTEMT00300063 413 0.0374 (112/2991) 0 * Os_TE_265166 Os_TE_265166 Chr5 858024 858023 + ORSiTEMT00300001 383 0.0381 (114/2989) 0 * Os_TE_265167 Os_TE_265160 Chr5 851671 851670 - ORSiTETNOOT00216 3569 0.0023 (7/2994) 0 * * Os_TE_265148 Chr5 849059 849060 + ORSiTERTOOT00226 792 0.0003 (1/2996) 0 * Os_TE_265147 Os_TE_265147 Chr5 849055 849054 - SZ-22_LTR 4403 0.0003 (1/2994) 0 * Os_TE_265148 Os_TE_265113 Chr5 834105 834106 - INDITTO 263 0.0569 (163/2866) 0 * Os_TE_265112 Os_TE_265112 Chr5 834103 834102 + INDITTO 263 0.0523 (150/2868) 0 * Os_TE_265113 Os_TE_265087 Chr5 828342 828341 + F804 170 0.0003 (1/2971) 0 * * Os_TE_265072 Chr5 825681 825682 - RETRO2_LTR 12874 0.0655 (190/2901) 0 * Os_TE_265071 Os_TE_265071 Chr5 825677 825676 + RETRO2_LTR 12874 0.0669 (195/2915) 0 * Os_TE_265072 Os_TE_265064 Chr5 824742 824743 + INDITTO 263 0.2483 (673/2710) 0 * Os_TE_265063 Os_TE_265063 Chr5 824740 824739 - INDITTO 263 0.2305 (626/2716) 0 * Os_TE_265064 Os_TE_265053 Chr5 823770 823771 + COPIA2-LTR_OS 6433 0.0003 (1/2891) 0 * Os_TE_265052 Os_TE_265052 Chr5 823766 823765 - COPIA2-LTR_OS 6433 0.0003 (1/2893) 0 * Os_TE_265053 Os_TE_265050 Chr5 823697 823698 - COPIA2-LTR_OS 6433 0.0028 (8/2899) 0 * Os_TE_265049 Os_TE_265049 Chr5 823693 823692 + COPIA2-LTR_OS 6433 0.0028 (8/2894) 0 * Os_TE_265050 Os_TE_265038 Chr5 821624 821625 + RETROSAT2LTR 12796 0.0507 (148/2919) 0 * Os_TE_265037 Os_TE_265037 Chr5 821622 821621 - RETROSAT2LTR 12796 0.0545 (160/2936) 0 * Os_TE_265038 Os_TE_265012 Chr5 815091 815090 - NDNA1TNA_OS 334 0.0049 (14/2865) 0 * * Os_TE_264964 Chr5 796853 796854 - RIREX_LTR 8828 0.0357 (101/2832) 0 * Os_TE_264963 Os_TE_264963 Chr5 796849 796848 + RIREX_LTR 8828 0.0384 (109/2842) 0 * Os_TE_264964 Os_TE_264962 Chr5 796472 796473 + COPIA2-LTR_OS 6433 0.0003 (1/2949) 0 * Os_TE_264961 Os_TE_264961 Chr5 796468 796467 - COPIA2-LTR_OS 6433 0.0003 (1/2952) 0 * Os_TE_264962 Os_TE_264960 Chr5 795260 795261 + STOWAWAY15-2_OS 145 0.3651 (1092/2991) 0 * * Os_TE_264950 Chr5 793424 793619 + ORSgTEMT02000007 195 0.6505 (1943/2987) 1 Intact * Os_TE_264949 Chr5 793191 793192 + ORSiTERTOOT00296 5553 0.0003 (1/2986) 0 * Os_TE_264948 Os_TE_264948 Chr5 793187 793186 - SC-3_LTR 5748 0.0003 (1/2985) 0 * Os_TE_264949 Os_TE_264945 Chr5 787170 787171 - SC-3_LTR 5748 0.0007 (2/2994) 0 * Os_TE_264944 Os_TE_264944 Chr5 787166 787165 + ORSiTERTOOT00296 5553 0.0007 (2/2992) 0 * Os_TE_264945 Os_TE_264942 Chr5 785548 785549 - RIREX_LTR 8828 0.0020 (6/2998) 0 * Os_TE_264941 Os_TE_264941 Chr5 785544 785543 + RIREX_LTR 8828 0.0020 (6/2999) 0 * Os_TE_264942 Os_TE_264936 Chr5 783012 783011 - COPIA2-LTR_OS 6433 0.0003 (1/2981) 0 * * Os_TE_264933 Chr5 782183 782182 + ORSgTEMT00500476 150 0.3544 (1059/2988) 0 * Os_TE_264932 Os_TE_264932 Chr5 782179 782180 - ORSgTEMT00501158 153 0.3557 (1064/2991) 0 * Os_TE_264933 Os_TE_264928 Chr5 780864 780863 - CACTA-H 1152 0.0020 (4/1974) 0 * Os_TE_264927 Os_TE_264927 Chr5 780863 780864 + CACTA-B 1103 0.0013 (4/2967) 0 * Os_TE_264928 Os_TE_264924 Chr5 779726 779964 + ORSgTEMT01602181 239 0.6596 (1961/2973) 1 Intact * Os_TE_264922 Chr5 779458 779457 - ORSgTEMT00901723 248 0.0003 (1/2976) 0 * * Os_TE_264921 Chr5 779432 779431 - ORSgTEMT00901723 248 0.3495 (1039/2973) 0 * * Os_TE_264918 Chr5 778296 776717 - MERMITE18B 1306 0.6614 (1967/2974) 1 Intact Os_TE_264913 Os_TE_264913 Chr5 776717 778296 - MERMITE18B 1306 0.6549 (1892/2889) 1 Intact Os_TE_264918 Os_TE_264894 Chr5 768549 768550 + SZ-9LTR 965 0.0003 (1/2999) 0 * Os_TE_264893 Os_TE_264893 Chr5 768545 768544 - SZ-9LTR 965 0.0003 (1/2999) 0 * Os_TE_264894 Os_TE_264874 Chr5 762677 762533 + ORSgTEMT00501023 149 0.8605 (2579/2997) 1 Intact * Os_TE_264867 Chr5 757493 746183 - ORSgTERT00201216 11284 0.7310 (2103/2877) 1 Intact * Os_TE_264852 Chr5 746183 757493 - RIRE2_LTR 11306 0.8321 (2444/2937) 1 Intact * Os_TE_264851 Chr5 745981 745982 - MuDR4_OS 7610 0.0309 (74/2394) 0 * Os_TE_264850 Os_TE_264850 Chr5 745974 745973 - MuDR4_OS 7610 0.0337 (81/2401) 0 * Os_TE_264851 Os_TE_264847 Chr5 745599 745362 + ORSgTEMT01600628 237 0.4789 (794/1658) 1 Intact * Os_TE_264846 Chr5 745357 745358 - NDNA1TNA_OS 334 0.0003 (1/2884) 0 * * Os_TE_264845 Chr5 745307 745308 + ORSgTEMT00502401 147 0.1201 (354/2947) 0 * Os_TE_264844 Os_TE_264844 Chr5 745306 745305 + ORSgTEMT00500498 155 0.1209 (352/2911) 0 * Os_TE_264845 Os_TE_264839 Chr5 744385 744384 + ORSgTEMT01601591 242 0.0004 (1/2415) 0 * Os_TE_264838 Os_TE_264838 Chr5 744383 744384 + STOWAWAY51_OS 246 0.0003 (1/2918) 0 * Os_TE_264839 Os_TE_264826 Chr5 739633 739506 - ORSgTEMT01701882 154 0.7098 (2113/2977) 1 Intact Os_TE_264824 Os_TE_264824 Chr5 739506 739626 + ORSgTEMT01700505 154 0.7062 (2108/2985) 1 Intact Os_TE_264826 Os_TE_264806 Chr5 725141 725140 + ORSgTEMT01400031 216 0.3028 (903/2982) 0 * Os_TE_264805 Os_TE_264805 Chr5 725135 725136 + STOWAWAY51_OS 246 0.3075 (918/2985) 0 * Os_TE_264806 Os_TE_264804 Chr5 725062 725063 - TRUNCATOR2_LTR 2904 0.0020 (6/2975) 0 * Os_TE_264803 Os_TE_264803 Chr5 725058 725057 + ORSiCMCM00100019 2717 0.0028 (6/2136) 0 * Os_TE_264804 Os_TE_264795 Chr5 717378 717004 - BUHUI 375 0.8629 (2580/2990) 1 Intact Os_TE_264793 Os_TE_264793 Chr5 717003 717378 + BUHUI 375 0.8625 (2571/2981) 1 Intact Os_TE_264795 Os_TE_264789 Chr5 713703 713702 + DS-RICE3N 525 0.0017 (5/2986) 0 * * Os_TE_264788 Chr5 713348 713090 - STOWAWAY10_OS 259 0.8184 (2325/2841) 1 Intact Os_TE_264786 Os_TE_264786 Chr5 713088 713340 - ORSgTEMT00101174 225 0.7837 (1895/2418) 1 Intact Os_TE_264788 Os_TE_264781 Chr5 709954 709955 - CASLET 354 0.0047 (14/2977) 0 * Os_TE_264780 Os_TE_264780 Chr5 709952 709951 + CASLET 354 0.0050 (15/2992) 0 * Os_TE_264781 Os_TE_264778 Chr5 707820 706436 - MERMITED 1572 0.4251 (1257/2957) 0.91 Intact * Os_TE_264768 Chr5 700720 700719 - STOWAWAY51_OS 246 0.0003 (1/2903) 0 * * Os_TE_264767 Chr5 700667 700666 - ORSgTEMT01702216 170 0.6123 (1788/2920) 0 * * Os_TE_264763 Chr5 700308 700086 - ORSgTETNOOT00355 222 0.3903 (1124/2880) 1 Intact Os_TE_264762 Os_TE_264762 Chr5 700086 700308 - TESS 244 0.4341 (1255/2891) 1 Intact Os_TE_264763 Os_TE_264760 Chr5 699939 699940 - SZ-55_LTR 10318 0.0003 (1/2992) 0 * Os_TE_264759 Os_TE_264759 Chr5 699935 699934 + SZ-55_LTR 10318 0.0003 (1/2993) 0 * Os_TE_264760 Os_TE_264758 Chr5 699408 699407 - COWARD-3 221 0.5796 (1675/2890) 0 * * Os_TE_264756 Chr5 698195 698196 - SC-8_LTR 4951 0.0003 (1/2983) 0 * * Os_TE_264735 Chr5 681566 683001 + OSTE33 1012 0.4132 (783/1895) 1 Intact * Os_TE_264726 Chr5 678849 678850 - RIRE2_LTR 11306 0.0020 (4/2041) 0 * Os_TE_264725 Os_TE_264725 Chr5 678845 678844 + RIRE2_LTR 11306 0.0020 (4/2043) 0 * Os_TE_264726 Os_TE_264719 Chr5 674957 671535 - SZ-40LTR 2465 0.7094 (2026/2856) 1 Intact * Os_TE_264713 Chr5 670755 670756 - SZ-22_LTR 4403 0.1009 (301/2983) 0 * Os_TE_264712 Os_TE_264712 Chr5 670751 670750 + ORSiTERTOOT00226 792 0.1047 (303/2894) 0 * Os_TE_264713 Os_TE_264710 Chr5 670416 670417 - RIREX_LTR 8828 0.0003 (1/2971) 0 * Os_TE_264709 Os_TE_264709 Chr5 670412 670411 + RIREX_LTR 8828 0.0003 (1/2938) 0 * Os_TE_264710 Os_TE_264708 Chr5 670319 670318 - MIDWAY 985 0.0019 (4/2126) 0 * * Os_TE_264706 Chr5 669557 669556 - TYPEM 227 0.0005 (1/2002) 0 * Os_TE_264705 Os_TE_264705 Chr5 669556 669557 - ORSgTEMT02400246 177 0.0003 (1/2860) 0 * Os_TE_264706 Os_TE_264697 Chr5 668400 668210 + ORSgTEMT01601122 212 0.6707 (1990/2967) 1 Intact * Os_TE_264686 Chr5 665811 665810 + ORSgTEMT01602051 240 0.2905 (662/2279) 0 * Os_TE_264685 Os_TE_264685 Chr5 665808 665809 - TREP215 239 0.3210 (753/2346) 0 * Os_TE_264686 Os_TE_264684 Chr5 665802 665803 + COPI2_LTR 4733 0.0004 (1/2254) 0 * * Os_TE_264675 Chr5 662008 662007 - ORSgTEMT01601493 303 0.0097 (29/2985) 0 * Os_TE_264674 Os_TE_264674 Chr5 662005 662006 - ORSgTEMT01601159 240 0.0104 (31/2976) 0 * Os_TE_264675 Os_TE_264628 Chr5 646171 646172 + AMYLTP 383 0.0093 (28/2996) 0 * Os_TE_264627 Os_TE_264627 Chr5 646163 646162 - AMYLTP 383 0.0097 (29/2994) 0 * Os_TE_264628 Os_TE_264625 Chr5 643946 643947 + RIREX_LTR 8828 0.0003 (1/2935) 0 * Os_TE_264624 Os_TE_264624 Chr5 643942 643941 - RIRE2_LTR 11306 0.0003 (1/2938) 0 * Os_TE_264625 Os_TE_264617 Chr5 633567 633568 + SZ-55_LTR 10318 0.2570 (731/2844) 0 * Os_TE_264616 Os_TE_264616 Chr5 633563 633562 - SZ-55_LTR 10318 0.2365 (660/2791) 0 * Os_TE_264617 Os_TE_264614 Chr5 633421 633420 + COPIA2-LTR_OS 6433 0.0101 (30/2960) 0 * * Os_TE_264600 Chr5 628923 614090 - SEVERIN-2 1952 0.2160 (641/2968) 1 Intact Os_TE_264598 Os_TE_264598 Chr5 614090 628923 + SEVERIN-2 1952 0.2242 (669/2984) 1 Intact Os_TE_264600 Os_TE_264596 Chr5 613985 613984 + COPI2_LTR 4733 0.0003 (1/2986) 0 * * Os_TE_264572 Chr5 599896 599895 + TWIFBIG 3567 0.0057 (17/2994) 0 * * Os_TE_264566 Chr5 593214 593215 + ORSgTEMT01601122 212 0.0003 (1/2957) 0 * * Os_TE_264542 Chr5 587274 587275 + ORSgTEMT01701056 154 0.7984 (792/992) -1 * * Os_TE_264541 Chr5 587053 587052 + ORSgTEMT01601036 240 0.0007 (1/1418) 0 * * Os_TE_264520 Chr5 584339 584340 + COPI2_LTR 4733 0.0031 (9/2934) 0 * Os_TE_264519 Os_TE_264519 Chr5 584335 584334 - COPI2_LTR 4733 0.0031 (9/2936) 0 * Os_TE_264520 Os_TE_264462 Chr5 555564 555565 - SC-3_LTR 5748 0.0003 (1/2998) 0 * Os_TE_264461 Os_TE_264461 Chr5 555560 555559 + ORSiTERTOOT00296 5553 0.0003 (1/2998) 0 * Os_TE_264462 Os_TE_264455 Chr5 552033 552034 - OSTE24 683 0.0054 (16/2972) 0 * Os_TE_264454 Os_TE_264454 Chr5 552022 552021 - OSTE24 683 0.0057 (17/2976) 0 * Os_TE_264455 Os_TE_264432 Chr5 544156 544155 - RETROSAT3_LTR 11537 0.0013 (4/2970) 0 * * Os_TE_264428 Chr5 542979 542980 - ORSgTETN00200001 10994 0.1336 (398/2979) 0 * Os_TE_264427 Os_TE_264427 Chr5 542977 542976 + SPMLIKE 10989 0.1299 (386/2971) 0 * Os_TE_264428 Os_TE_264425 Chr5 541832 541833 - MuDR3_OS 8604 0.0097 (23/2380) 0 * Os_TE_264424 Os_TE_264424 Chr5 541823 541822 - MuDR3_OS 8604 0.0223 (24/1077) 0 * Os_TE_264425 Os_TE_264422 Chr5 535764 535765 - AMYLTP 383 0.3386 (1000/2953) 0 * * Os_TE_264402 Chr5 529434 529435 - COPIA2-LTR_OS 6433 0.0923 (274/2968) 0 * Os_TE_264401 Os_TE_264401 Chr5 529430 529429 + COPIA2-LTR_OS 6433 0.0814 (240/2949) 0 * Os_TE_264402 Os_TE_264400 Chr5 528786 528787 - TYPEM 227 0.0004 (1/2427) 0 * * Os_TE_264380 Chr5 524519 524518 - TYPEM 227 0.0003 (1/2943) 0 * * Os_TE_264361 Chr5 517635 517636 - SC-8_LTR 4951 0.0003 (1/2994) 0 * Os_TE_264360 Os_TE_264360 Chr5 517631 517630 + SC-8_LTR 4951 0.0003 (1/2994) 0 * Os_TE_264361 Os_TE_264358 Chr5 516631 516363 + ORSgTEMT06100010 269 0.5327 (938/1761) 1 Intact Os_TE_264356 Os_TE_264356 Chr5 516363 516631 - ORSgTEMT06100010 269 0.3108 (929/2989) 1 Intact Os_TE_264358 Os_TE_264353 Chr5 515405 515406 - F524 291 0.0004 (1/2681) 0 * * Os_TE_264352 Chr5 515320 515321 - ORSiTERT00200154 9386 0.4442 (1253/2821) 0 * Os_TE_264351 Os_TE_264351 Chr5 515314 515313 + TRUNCATOR 2918 0.4477 (1268/2832) 0 * Os_TE_264352 Os_TE_264323 Chr5 505449 498629 + MUDROS2 6821 0.3091 (918/2970) 1 Intact * Os_TE_264311 Chr5 496831 496832 - TNR8-21 428 0.0013 (4/2973) 0 * * Os_TE_264295 Chr5 492235 492236 + MPING 430 0.0044 (13/2969) 0 * Os_TE_264294 Os_TE_264294 Chr5 492233 492232 - MPING 430 0.0047 (14/2969) 0 * Os_TE_264295 Os_TE_264283 Chr5 488138 488139 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_264282 Os_TE_264282 Chr5 488134 488133 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_264283 Os_TE_264277 Chr5 484728 484836 + SINE1OS 127 0.3101 (928/2993) 1 Intact * Os_TE_264275 Chr5 483365 483364 + TWIF 586 0.0003 (1/2979) 0 * * Os_TE_264269 Chr5 481278 481279 + INDITTO 263 0.0007 (2/2981) 0 * Os_TE_264268 Os_TE_264268 Chr5 481276 481275 - INDITTO 263 0.0007 (2/2990) 0 * Os_TE_264269 Os_TE_264267 Chr5 481178 481179 - INDITTO 263 0.0528 (158/2994) 0 * Os_TE_264266 Os_TE_264266 Chr5 481176 481175 + INDITTO 263 0.0534 (160/2995) 0 * Os_TE_264267 Os_TE_264260 Chr5 471324 471325 + OSTE33 1012 0.1979 (583/2946) 0 * Os_TE_264259 Os_TE_264259 Chr5 471315 471314 + OSTE33 1012 0.1990 (586/2945) 0 * Os_TE_264260 Os_TE_264241 Chr5 464379 464380 + AMYLTP 383 0.1187 (349/2941) 0 * Os_TE_264240 Os_TE_264240 Chr5 464371 464370 - AMYLTP 383 0.1158 (342/2953) 0 * Os_TE_264241 Os_TE_264232 Chr5 462661 462660 - GYPSY-A_LTR 8951 0.0003 (1/2909) 0 * * Os_TE_264200 Chr5 445530 445531 - SC-8_LTR 4951 0.0003 (1/2983) 0 * Os_TE_264199 Os_TE_264199 Chr5 445526 445525 + SC-8_LTR 4951 0.0003 (1/2983) 0 * Os_TE_264200 Os_TE_264194 Chr5 444092 444091 - LIER 339 0.6647 (1986/2988) 0 * * Os_TE_264193 Chr5 443670 443669 + ORSgTEMT01601591 242 0.0003 (1/2988) 0 * * Os_TE_264192 Chr5 443657 443658 + ORSgTETNOOT00908 242 0.0003 (1/2989) 0 * * Os_TE_264172 Chr5 426288 426289 - MPING 430 0.0013 (4/2981) 0 * Os_TE_264171 Os_TE_264171 Chr5 426286 426285 + MPING 430 0.0013 (4/2983) 0 * Os_TE_264172 Os_TE_264159 Chr5 409215 409216 - RIREX_LTR 8828 0.0003 (1/2986) 0 * Os_TE_264158 Os_TE_264158 Chr5 409211 409210 + RIREX_LTR 8828 0.0003 (1/2986) 0 * Os_TE_264159 Os_TE_264157 Chr5 404505 379195 + ORSgTERTOOT00009 12852 0.3213 (936/2913) 1 Intact Os_TE_264133 Os_TE_264133 Chr5 379195 404505 + ORSgTERTOOT00009 12852 0.3155 (928/2941) 1 Intact Os_TE_264157 Os_TE_264118 Chr5 370956 370955 - ORSiTETNOOT00200 3563 0.0003 (1/2891) 0 * * Os_TE_264104 Chr5 369488 369487 - COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * * Os_TE_264090 Chr5 364462 364461 - SC-8_LTR 4951 0.0003 (1/2987) 0 * * Os_TE_264081 Chr5 358044 358045 + ORSiTERTOOT00226 792 0.0003 (1/2997) 0 * * Os_TE_264079 Chr5 357741 357742 + ORSiTERTOOT00226 792 0.0595 (178/2994) 0 * Os_TE_264078 Os_TE_264078 Chr5 357737 357736 - SZ-22_LTR 4403 0.0587 (176/2997) 0 * Os_TE_264079 Os_TE_264066 Chr5 350235 350234 - STOWAWAY51_OS 246 0.0034 (10/2961) 0 * Os_TE_264065 Os_TE_264065 Chr5 350232 350233 - STOWAWAY51_OS 246 0.0034 (10/2942) 0 * Os_TE_264066 Os_TE_264064 Chr5 349930 349931 - INDITTO 263 0.0080 (12/1506) 0 * Os_TE_264063 Os_TE_264063 Chr5 349928 349927 + INDITTO 263 0.0080 (12/1504) 0 * Os_TE_264064 Os_TE_264056 Chr5 346105 346104 - SZ-55_LTR 10318 0.0003 (1/2991) 0 * * Os_TE_264026 Chr5 339760 339761 - COPIA2-LTR_OS 6433 0.0027 (8/2998) 0 * Os_TE_264025 Os_TE_264025 Chr5 339756 339755 + COPIA2-LTR_OS 6433 0.0020 (6/2997) 0 * Os_TE_264026 Os_TE_264012 Chr5 334921 334920 - ORSgTETN00200001 10994 0.0199 (59/2971) 0 * * Os_TE_264003 Chr5 334346 334347 - ORSgTEMT00900892 250 0.6574 (1915/2913) 0 * * Os_TE_263999 Chr5 333388 333389 + SPMLIKE 10989 0.0220 (63/2864) 0 * * Os_TE_263993 Chr5 328550 328549 - ORSiTERTOOT00004 4000 0.0003 (1/2878) 0 * * Os_TE_263977 Chr5 324599 324600 + HELITRON2_OS 15167 0.0440 (92/2093) 0 * Os_TE_263976 Os_TE_263976 Chr5 324595 324594 - HELITRON2_OS 15167 0.0334 (98/2933) 0 * Os_TE_263977 Os_TE_263962 Chr5 315753 315752 - INDITTO 263 0.0172 (51/2958) 0 * * Os_TE_263961 Chr5 315593 315594 - SZ-62LTR 3649 0.0017 (5/2954) 0 * * Os_TE_263936 Chr5 309447 309448 - SC-8_LTR 4951 0.0003 (1/2976) 0 * Os_TE_263935 Os_TE_263935 Chr5 309443 309442 + SC-8_LTR 4951 0.0003 (1/2978) 0 * Os_TE_263936 Os_TE_263929 Chr5 308160 308161 + SC-8_LTR 4951 0.0017 (5/2985) 0 * Os_TE_263928 Os_TE_263928 Chr5 308156 308155 - SC-8_LTR 4951 0.0017 (5/2988) 0 * Os_TE_263929 Os_TE_263926 Chr5 306406 306407 - SC-8_LTR 4951 0.0017 (5/2980) 0 * Os_TE_263925 Os_TE_263925 Chr5 306402 306401 + SC-8_LTR 4951 0.0017 (5/2983) 0 * Os_TE_263926 Os_TE_263919 Chr5 302609 302610 - SC-3_LTR 5748 0.0007 (2/2998) 0 * Os_TE_263918 Os_TE_263918 Chr5 302605 302604 + ORSiTERTOOT00296 5553 0.0007 (2/2995) 0 * Os_TE_263919 Os_TE_263917 Chr5 301909 301910 + ORSiTERTOOT00381 4988 0.0003 (1/2993) 0 * Os_TE_263916 Os_TE_263916 Chr5 301905 301904 - SC-8_LTR 4951 0.0003 (1/2989) 0 * Os_TE_263917 Os_TE_263910 Chr5 297708 297709 - MuDR4_OS 7610 0.0170 (51/2997) 0 * Os_TE_263909 Os_TE_263909 Chr5 297702 297701 - MuDR4_OS 7610 0.0180 (54/2998) 0 * Os_TE_263910 Os_TE_263901 Chr5 290922 290921 - ORSgTEMT00100578 341 0.0171 (51/2978) 0 * Os_TE_263900 Os_TE_263900 Chr5 290921 290922 + NDNA1TNA_OS 334 0.0178 (52/2928) 0 * Os_TE_263901 Os_TE_263896 Chr5 287804 287805 + ORSgTETNOOT00908 242 0.0003 (1/2991) 0 * * Os_TE_263875 Chr5 279609 279610 - COPI2_LTR 4733 0.0004 (1/2841) 0 * * Os_TE_263874 Chr5 279529 279528 - SZ-20LTR 1395 0.0008 (2/2506) 0 * * Os_TE_263865 Chr5 277274 277275 - COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_263864 Os_TE_263864 Chr5 277270 277269 + COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_263865 Os_TE_263863 Chr5 276949 276950 - ORSiTERTOOT00332 5395 0.0003 (1/2874) 0 * Os_TE_263862 Os_TE_263862 Chr5 276945 276944 + ORSiTERTOOT00332 5395 0.0003 (1/2991) 0 * Os_TE_263863 Os_TE_263857 Chr5 276056 276177 + SINE1R5_OS 121 0.3997 (1190/2977) 1 Intact * Os_TE_263852 Chr5 272144 272145 - SC-8_LTR 4951 0.0003 (1/2987) 0 * Os_TE_263851 Os_TE_263851 Chr5 272140 272139 + SC-8_LTR 4951 0.0003 (1/2989) 0 * Os_TE_263852 Os_TE_263818 Chr5 259610 259609 - ORSgTEMT00502258 148 0.0602 (180/2988) 0 * * Os_TE_263810 Chr5 258625 258626 - ORSiTERTOOT00333 4719 0.0460 (138/2998) 0 * Os_TE_263809 Os_TE_263809 Chr5 258622 258621 + ORSiTERTOOT00333 4719 0.0474 (142/2998) 0 * Os_TE_263810 Os_TE_263781 Chr5 227717 227718 + ORSiTERTOOT00367 5639 0.0003 (1/2991) 0 * Os_TE_263780 Os_TE_263780 Chr5 227713 227712 - ORSiTERTOOT00367 5639 0.0003 (1/2991) 0 * Os_TE_263781 Os_TE_263774 Chr5 222633 222634 + ORSiTERTOOT00296 5553 0.0057 (17/2990) 0 * Os_TE_263773 Os_TE_263773 Chr5 222629 222628 - SC-3_LTR 5748 0.0060 (18/2992) 0 * Os_TE_263774 Os_TE_263730 Chr5 206778 206777 - RETRO2_LTR 12874 0.0007 (2/2964) 0 * * Os_TE_263719 Chr5 199872 199873 - SC-3_LTR 5748 0.0003 (1/2993) 0 * Os_TE_263718 Os_TE_263718 Chr5 199868 199867 + ORSiTERTOOT00296 5553 0.0003 (1/2994) 0 * Os_TE_263719 Os_TE_263675 Chr5 181590 181589 - SC-8_LTR 4951 0.0007 (2/2997) 0 * * Os_TE_263674 Chr5 179047 179046 + OSTE33 1012 0.0003 (1/2997) 0 * * Os_TE_263672 Chr5 177933 177934 - ORSgTEMT02400179 221 0.0546 (162/2967) 0 * Os_TE_263671 Os_TE_263671 Chr5 177932 177931 - TYPEM 227 0.0538 (160/2975) 0 * Os_TE_263672 Os_TE_263654 Chr5 172500 172501 - NDNA1TNA_OS 334 0.0028 (8/2907) 0 * Os_TE_263653 Os_TE_263653 Chr5 172498 172497 + NDNA1TNA_OS 334 0.0024 (7/2903) 0 * Os_TE_263654 Os_TE_263647 Chr5 171255 171256 + MPING 430 0.0017 (5/2969) 0 * Os_TE_263646 Os_TE_263646 Chr5 171253 171252 - MPING 430 0.0017 (5/2970) 0 * Os_TE_263647 Os_TE_263630 Chr5 166172 166173 + SZ-55_LTR 10318 0.0010 (3/2983) 0 * Os_TE_263629 Os_TE_263629 Chr5 166168 166167 - SZ-55_LTR 10318 0.0010 (3/2980) 0 * Os_TE_263630 Os_TE_263617 Chr5 152251 152252 - F569 228 0.0264 (79/2988) 0 * Os_TE_263616 Os_TE_263616 Chr5 152249 152248 + F569 228 0.0258 (77/2985) 0 * Os_TE_263617 Os_TE_263607 Chr5 148412 148413 - AMYLTP 383 0.0003 (1/2997) 0 * Os_TE_263606 Os_TE_263606 Chr5 148404 148403 + AMYLTP 383 0.0003 (1/2996) 0 * Os_TE_263607 Os_TE_263603 Chr5 147799 147800 + ORSiTERTOOT00226 792 0.0003 (1/2997) 0 * Os_TE_263602 Os_TE_263602 Chr5 147795 147794 - SZ-22_LTR 4403 0.0003 (1/2997) 0 * Os_TE_263603 Os_TE_263594 Chr5 143151 143152 + OSMU5 4881 0.6723 (1943/2890) 0 * * Os_TE_263592 Chr5 140592 140593 + ORSiTERTOOT00296 5553 0.0003 (1/2983) 0 * Os_TE_263591 Os_TE_263591 Chr5 140588 140587 - SC-3_LTR 5748 0.0003 (1/2978) 0 * Os_TE_263592 Os_TE_263588 Chr5 139905 139904 - SC-8_LTR 4951 0.0003 (1/2987) 0 * * Os_TE_263586 Chr5 136085 136086 + JOUZHENA 607 0.6734 (2012/2988) 0 * Os_TE_263585 Os_TE_263585 Chr5 136078 136077 - JOUZHENA 607 0.5124 (1074/2096) 0 * Os_TE_263586 Os_TE_263569 Chr5 128862 128863 - RETROFIT_LTR 4866 0.0003 (1/2976) 0 * * Os_TE_263537 Chr5 119730 119731 + SINE9_OS 293 0.0004 (1/2391) 0 * * Os_TE_263526 Chr5 113020 113021 - SZ-62LTR 3649 0.6719 (1976/2941) 0 * Os_TE_263525 Os_TE_263525 Chr5 113016 113015 + SZ-62LTR 3649 0.5880 (1557/2648) 0 * Os_TE_263526 Os_TE_263482 Chr5 86084 86085 + COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_263481 Os_TE_263481 Chr5 86080 86079 - COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_263482 Os_TE_263470 Chr5 79580 79579 - SC-3_LTR 5748 0.0003 (1/2902) 0 * * Os_TE_263448 Chr5 70937 70936 - STOWAWAY51_OS 246 0.0003 (1/2994) 0 * Os_TE_263447 Os_TE_263447 Chr5 70934 70935 - STOWAWAY51_OS 246 0.0003 (1/2996) 0 * Os_TE_263448 Os_TE_263439 Chr5 66130 66129 - CASGRANDA 465 0.0003 (1/2991) 0 * * Os_TE_263434 Chr5 60159 60158 - STOWAWAY51_OS 246 0.0007 (2/2962) 0 * Os_TE_263433 Os_TE_263433 Chr5 60153 60154 + STOWAWAY51_OS 246 0.0007 (2/2972) 0 * Os_TE_263434 Os_TE_263386 Chr5 47650 47651 - RIREX_LTR 8828 0.0020 (6/2936) 0 * Os_TE_263385 Os_TE_263385 Chr5 47646 47645 + RIREX_LTR 8828 0.0021 (6/2913) 0 * Os_TE_263386 Os_TE_411095 Chr4 35478079 35478080 + MERMITEA 1710 0.0007 (2/2991) 0 * Os_TE_411094 Os_TE_411094 Chr4 35478070 35478069 + MERMITEA 1710 0.0007 (2/2990) 0 * Os_TE_411095 Os_TE_411093 Chr4 35476184 35476185 + SC-8_LTR 4951 0.0010 (3/2984) 0 * Os_TE_411092 Os_TE_411092 Chr4 35476180 35476179 - SC-8_LTR 4951 0.0010 (3/2982) 0 * Os_TE_411093 Os_TE_411062 Chr4 35453319 35453320 + ORSiTERTOOT00296 5553 0.0348 (104/2988) 0 * Os_TE_411061 Os_TE_411061 Chr4 35453315 35453314 - SC-3_LTR 5748 0.0348 (104/2989) 0 * Os_TE_411062 Os_TE_411045 Chr4 35447637 35447638 - RETRO2_LTR 12874 0.5897 (1762/2988) 0 * Os_TE_411044 Os_TE_411044 Chr4 35447633 35447632 + RETRO2_LTR 12874 0.5775 (1684/2916) 0 * Os_TE_411045 Os_TE_411032 Chr4 35443683 35443684 + ORSgTEMT00600376 329 0.0154 (46/2996) 0 * Os_TE_411031 Os_TE_411031 Chr4 35443678 35443677 + ORSgTEMT00600272 361 0.0154 (46/2995) 0 * Os_TE_411032 Os_TE_411026 Chr4 35439306 35439305 - OSTE24 683 0.0118 (35/2967) 0 * * Os_TE_411024 Chr4 35438143 35438144 - RIREX_LTR 8828 0.0007 (2/2994) 0 * * Os_TE_410950 Chr4 35413287 35413288 - COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_410949 Os_TE_410949 Chr4 35413283 35413282 + COPIA2-LTR_OS 6433 0.0003 (1/2975) 0 * Os_TE_410950 Os_TE_410947 Chr4 35413102 35413103 + INDITTO 263 0.0064 (19/2988) 0 * Os_TE_410946 Os_TE_410946 Chr4 35413100 35413099 - INDITTO 263 0.0067 (20/2993) 0 * Os_TE_410947 Os_TE_410888 Chr4 35394051 35394050 - NDNA1TNA_OS 334 0.0485 (144/2969) 0 * * Os_TE_410886 Chr4 35393970 35393969 + INDITTO 263 0.0003 (1/2954) 0 * * Os_TE_410848 Chr4 35368957 35368958 - INDITTO 263 0.0145 (39/2687) 0 * * Os_TE_410830 Chr4 35363529 35363530 - COPIA2-LTR_OS 6433 0.0003 (1/2940) 0 * Os_TE_410829 Os_TE_410829 Chr4 35363525 35363524 + COPIA2-LTR_OS 6433 0.0003 (1/2935) 0 * Os_TE_410830 Os_TE_410820 Chr4 35358266 35358267 + OSTE18 129 0.0003 (1/2988) 0 * * Os_TE_410804 Chr4 35342413 35342412 - NDNA1TNA_OS 334 0.0577 (173/2997) 0 * Os_TE_410803 Os_TE_410803 Chr4 35342412 35342413 + NDNA1TNA_OS 334 0.0577 (173/2999) 0 * Os_TE_410804 Os_TE_410750 Chr4 35312785 35312786 + ORSiTERTOOT00296 5553 0.0003 (1/2991) 0 * Os_TE_410749 Os_TE_410749 Chr4 35312781 35312780 - SC-3_LTR 5748 0.0003 (1/2989) 0 * Os_TE_410750 Os_TE_410721 Chr4 35297245 35297246 + ORSgTEMT00300122 416 0.0017 (5/2907) 0 * * Os_TE_410717 Chr4 35295815 35295814 + ORSgTETNOOT01686 252 0.0044 (13/2986) 0 * * Os_TE_410691 Chr4 35290414 35290415 - ORSgTERT00201346 4268 0.0007 (2/2949) 0 * * Os_TE_410673 Chr4 35286648 35286647 - STOWAWAY50_OS 174 0.0017 (5/2965) 0 * * Os_TE_410652 Chr4 35277018 35277019 - MPING 430 0.0007 (2/2999) 0 * Os_TE_410651 Os_TE_410651 Chr4 35277016 35277015 + MPING 430 0.0007 (2/2998) 0 * Os_TE_410652 Os_TE_410641 Chr4 35273184 35273183 - STOWAWAY51_OS 246 0.0020 (6/2991) 0 * Os_TE_410640 Os_TE_410640 Chr4 35273178 35273179 + STOWAWAY51_OS 246 0.0020 (6/2994) 0 * Os_TE_410641 Os_TE_410632 Chr4 35268993 35268992 + RIREX_LTR 8828 0.0003 (1/2998) 0 * * Os_TE_410619 Chr4 35263678 35263679 + Cassandra_OS-LTR 764 0.5734 (1706/2975) 0 * * Os_TE_410608 Chr4 35262619 35262620 - DS-RICE2N 613 0.0070 (21/2994) 0 * Os_TE_410607 Os_TE_410607 Chr4 35262612 35262611 + DS-RICE2N 613 0.0070 (21/2994) 0 * Os_TE_410608 Os_TE_410590 Chr4 35245387 35245386 + CACTA-H 1152 0.0444 (133/2997) 0 * Os_TE_410589 Os_TE_410589 Chr4 35245386 35245387 + ORSgTETN00200005 1121 0.0444 (133/2995) 0 * Os_TE_410590 Os_TE_410585 Chr4 35244192 35240253 - SZ-35LTR 3853 0.4350 (1302/2993) 1 Intact Os_TE_410579 Os_TE_410579 Chr4 35224804 35244192 + RETROSAT4_LTR 13504 0.4364 (1307/2995) 1 Intact Os_TE_410585 Os_TE_410574 Chr4 35222680 35222679 - HARB-1_OS 5166 0.0003 (1/2997) 0 * * Os_TE_410573 Chr4 35222047 35222046 + TWIFB1 3737 0.0067 (20/2993) 0 * * Os_TE_410560 Chr4 35220011 35220010 + STOWAWAY51_OS 246 0.0014 (4/2935) 0 * Os_TE_410559 Os_TE_410559 Chr4 35220005 35220006 + ORSgTEMT01601591 242 0.0010 (3/2945) 0 * Os_TE_410560 Os_TE_410555 Chr4 35218216 35218217 + CRM-LTR_OS 7749 0.0007 (1/1345) 0 * * Os_TE_410553 Chr4 35217288 35217287 - STOWAWAY11_OS 292 0.0004 (1/2709) 0 * * Os_TE_410538 Chr4 35213658 35209841 - SZ-67LTR 1540 0.4299 (1285/2989) 1 Intact Os_TE_410534 Os_TE_410534 Chr4 35209840 35213658 + SZ-67LTR 1540 0.4303 (1284/2984) 1 Intact Os_TE_410538 Os_TE_410523 Chr4 35206263 35195984 - ORSgTERT00201216 11284 0.3385 (1000/2954) 1 Intact Os_TE_410518 Os_TE_410518 Chr4 35194703 35206263 - RIRE2_LTR 11306 0.3439 (1022/2972) 1 Intact Os_TE_410523 Os_TE_410509 Chr4 35192385 35192386 - RIRE5-LTR_OS 6427 0.0074 (22/2991) 0 * Os_TE_410508 Os_TE_410508 Chr4 35192380 35192379 + RIRE5-LTR_OS 6427 0.0074 (22/2986) 0 * Os_TE_410509 Os_TE_410487 Chr4 35187497 35187496 + INDITTO 263 0.0003 (1/2999) 0 * * Os_TE_410469 Chr4 35180415 35180416 + COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_410468 Os_TE_410468 Chr4 35180411 35180410 - COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_410469 Os_TE_410465 Chr4 35180037 35180251 - STOWAWAY11_OS 292 0.3430 (1025/2988) 1 Intact * Os_TE_410462 Chr4 35174925 35174926 - ORSgTEMT01601208 238 0.0003 (1/2938) 0 * * Os_TE_410457 Chr4 35171758 35171757 - OSTONOR1_LTR 6440 0.0003 (1/2901) 0 * * Os_TE_410376 Chr4 35120677 35120676 - ORSgTEMT01000003 232 0.0007 (2/2962) 0 * * Os_TE_410368 Chr4 35118044 35118045 - SZ-35LTR 3853 0.0594 (177/2981) 0 * Os_TE_410367 Os_TE_410367 Chr4 35118040 35118039 - SZ-35LTR 3853 0.0588 (174/2959) 0 * Os_TE_410368 Os_TE_410357 Chr4 35115224 35115225 - SZ-25LTR 330 0.0013 (4/2993) 0 * * Os_TE_410348 Chr4 35113360 35113361 - OSTE24 683 0.0010 (3/2976) 0 * * Os_TE_410345 Chr4 35113217 35113218 - ORSgTEMT01600559 234 0.0013 (4/2976) 0 * * Os_TE_410323 Chr4 35102056 35102055 + ORSgTEMT01601591 242 0.0003 (1/2996) 0 * Os_TE_410322 Os_TE_410322 Chr4 35102053 35102054 + ORSgTEMT01601591 242 0.0003 (1/2998) 0 * Os_TE_410323 Os_TE_410297 Chr4 35082621 35082620 + STOWAWAY51_OS 246 0.0418 (125/2989) 0 * Os_TE_410296 Os_TE_410296 Chr4 35082615 35082616 - STOWAWAY51_OS 246 0.0421 (126/2992) 0 * Os_TE_410297 Os_TE_410271 Chr4 35078920 35078919 + NDNA1TNA_OS 334 0.0047 (14/2993) 0 * Os_TE_410270 Os_TE_410270 Chr4 35078913 35078914 - NDNA1TNA_OS 334 0.0047 (14/2990) 0 * Os_TE_410271 Os_TE_410259 Chr4 35076671 35076672 - INDITTO 263 0.0003 (1/2967) 0 * Os_TE_410258 Os_TE_410258 Chr4 35076669 35076668 - ORSgTETNOOT00762 266 0.0003 (1/2975) 0 * Os_TE_410259 Os_TE_410253 Chr4 35075204 35075205 - SZ-55_LTR 10318 0.0003 (1/2993) 0 * Os_TE_410252 Os_TE_410252 Chr4 35075200 35075199 + SZ-55_LTR 10318 0.0003 (1/2993) 0 * Os_TE_410253 Os_TE_410228 Chr4 35058386 35058387 - SZ-55_LTR 10318 0.0003 (1/2997) 0 * Os_TE_410227 Os_TE_410227 Chr4 35058382 35058381 + SZ-55_LTR 10318 0.0003 (1/2997) 0 * Os_TE_410228 Os_TE_410200 Chr4 35048829 35048830 - MPING 430 0.0003 (1/2999) 0 * Os_TE_410199 Os_TE_410199 Chr4 35048827 35048826 + MPING 430 0.0003 (1/2999) 0 * Os_TE_410200 Os_TE_410198 Chr4 35048544 35048545 - OSTE21 1271 0.0003 (1/2998) 0 * * Os_TE_410197 Chr4 35048505 35048506 + COPI2_LTR 4733 0.0003 (1/2999) 0 * Os_TE_410196 Os_TE_410196 Chr4 35048501 35048500 - COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_410197 Os_TE_410195 Chr4 35048219 35048220 + ORSgTEMT01602181 239 0.0067 (20/2989) 0 * * Os_TE_410194 Chr4 35048159 35048158 - MPING 430 0.5592 (1671/2988) 0 * * Os_TE_410189 Chr4 35047023 35047024 + MDR2 6967 0.0748 (224/2995) 0 * Os_TE_410188 Os_TE_410188 Chr4 35047015 35047014 - MDR2 6967 0.0761 (228/2995) 0 * Os_TE_410189 Os_TE_410181 Chr4 35045352 35045353 - ORSgTETNOOT02417 265 0.0751 (224/2983) 0 * Os_TE_410180 Os_TE_410180 Chr4 35045350 35045349 - INDITTO 263 0.0760 (227/2988) 0 * Os_TE_410181 Os_TE_410179 Chr4 35045267 35045268 + MPING 430 0.0007 (2/2985) 0 * Os_TE_410178 Os_TE_410178 Chr4 35045265 35045264 - MPING 430 0.0010 (3/2987) 0 * Os_TE_410179 Os_TE_410174 Chr4 35033907 35033908 - ORSgTEMT02000041 194 0.0775 (231/2982) 0 * Os_TE_410173 Os_TE_410173 Chr4 35033904 35033903 + ORSgTETNOOT00012 241 0.0771 (230/2984) 0 * Os_TE_410174 Os_TE_410137 Chr4 35010193 35010192 - STOWAWAY44_OS 240 0.0003 (1/2960) 0 * * Os_TE_410136 Chr4 35010045 35010046 - COPIA2-LTR_OS 6433 0.0104 (31/2992) 0 * Os_TE_410135 Os_TE_410135 Chr4 35010041 35010040 + COPIA2-LTR_OS 6433 0.0090 (27/2992) 0 * Os_TE_410136 Os_TE_410111 Chr4 34997150 34997151 + COPI2_LTR 4733 0.0003 (1/2950) 0 * * Os_TE_410066 Chr4 34970335 34971723 + CACTA-M 1129 0.3262 (977/2995) 1 Intact * Os_TE_410023 Chr4 34952271 34952270 - RETROSAT4_LTR 13504 0.6340 (1888/2978) 0 * * Os_TE_410021 Chr4 34952164 34952163 + RETROSAT4_LTR 13504 0.0392 (114/2909) 0 * * Os_TE_410013 Chr4 34942881 34942880 + HARB-1_OS 5166 0.0003 (1/2875) 0 * * Os_TE_409987 Chr4 34929931 34929930 - STOWAWAY51_OS 246 0.0027 (8/2993) 0 * Os_TE_409986 Os_TE_409986 Chr4 34929925 34929926 + STOWAWAY51_OS 246 0.0027 (8/2992) 0 * Os_TE_409987 Os_TE_409956 Chr4 34914802 34914801 - STOWAWAY51_OS 246 0.0197 (59/2996) 0 * Os_TE_409955 Os_TE_409955 Chr4 34914799 34914800 - STOWAWAY51_OS 246 0.0207 (62/2988) 0 * Os_TE_409956 Os_TE_409944 Chr4 34911595 34911596 + INDITTO 263 0.0419 (122/2912) 0 * Os_TE_409943 Os_TE_409943 Chr4 34911593 34911592 - INDITTO 263 0.0412 (121/2939) 0 * Os_TE_409944 Os_TE_409924 Chr4 34895831 34895832 - MPING 430 0.0003 (1/2979) 0 * * Os_TE_409919 Chr4 34890182 34890181 + STOWAWAY50_OS 174 0.6979 (1943/2784) 0 * * Os_TE_409915 Chr4 34889070 34889071 - RIREX_LTR 8828 0.4551 (1232/2707) 0 * * Os_TE_409913 Chr4 34889036 34889037 + CRATA 4786 0.6725 (2002/2977) 0 * * Os_TE_409890 Chr4 34876994 34876993 - TRUNCATOR 2918 0.0004 (1/2388) 0 * * Os_TE_409882 Chr4 34873785 34873786 + ORSgTERT00200216 776 0.0003 (1/2978) 0 * * Os_TE_409879 Chr4 34873261 34873262 + GYPSY-B_LTR 7068 0.0432 (129/2986) 0 * Os_TE_409878 Os_TE_409878 Chr4 34873257 34873256 - GYPSY-B_LTR 7068 0.0432 (129/2986) 0 * Os_TE_409879 Os_TE_409871 Chr4 34864263 34864262 + SC-8_LTR 4951 0.0030 (9/2984) 0 * * Os_TE_409866 Chr4 34861803 34861804 + COPIA2-LTR_OS 6433 0.0010 (3/2991) 0 * Os_TE_409865 Os_TE_409865 Chr4 34861799 34861798 - COPIA2-LTR_OS 6433 0.0010 (3/2988) 0 * Os_TE_409866 Os_TE_409862 Chr4 34859364 34859363 - NDNA2TNA_OS 346 0.1492 (420/2815) 0 * * Os_TE_409854 Chr4 34853327 34853328 - TRUNCATOR2_LTR 2904 0.0003 (1/2861) 0 * * Os_TE_409787 Chr4 34810462 34810461 + ORSgTETNOOT00032 218 0.0770 (230/2988) 0 * * Os_TE_409766 Chr4 34800871 34800870 - TELIA 141 0.0003 (1/2968) 0 * Os_TE_409765 Os_TE_409765 Chr4 34800867 34800868 + TELIA 141 0.0003 (1/2969) 0 * Os_TE_409766 Os_TE_409751 Chr4 34789302 34789303 + HELITRON7_OS 10153 0.0440 (132/2998) 0 * * Os_TE_409733 Chr4 34778157 34778158 + RETRO2_LTR 12874 0.0003 (1/2888) 0 * Os_TE_409732 Os_TE_409732 Chr4 34778153 34778152 - RETRO1_LTR 8314 0.0003 (1/2941) 0 * Os_TE_409733 Os_TE_409700 Chr4 34762301 34762302 + ORSiTERTOOT00402 2660 0.0007 (2/2987) 0 * Os_TE_409699 Os_TE_409699 Chr4 34762297 34762296 - ORSiTERTOOT00402 2660 0.0007 (2/2988) 0 * Os_TE_409700 Os_TE_409688 Chr4 34758196 34758197 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_409687 Os_TE_409687 Chr4 34758192 34758191 - COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_409688 Os_TE_409675 Chr4 34755180 34755181 + COPIA2-LTR_OS 6433 0.0010 (3/2999) 0 * Os_TE_409674 Os_TE_409674 Chr4 34755176 34755175 - COPIA2-LTR_OS 6433 0.0010 (3/2997) 0 * Os_TE_409675 Os_TE_409654 Chr4 34748956 34748955 - ORSgTETN00200001 10994 0.5187 (1499/2890) 0 * * Os_TE_409647 Chr4 34746199 34746200 - COPI2_LTR 4733 0.0003 (1/2952) 0 * Os_TE_409646 Os_TE_409646 Chr4 34746195 34746194 + COPI2_LTR 4733 0.0003 (1/2953) 0 * Os_TE_409647 Os_TE_409643 Chr4 34744926 34744925 - ORSgTEMT02400246 177 0.0013 (4/2974) 0 * Os_TE_409642 Os_TE_409642 Chr4 34744925 34744926 - TYPEM 227 0.0013 (4/2969) 0 * Os_TE_409643 Os_TE_409596 Chr4 34720633 34720634 + COPI2_LTR 4733 0.0003 (1/2977) 0 * Os_TE_409595 Os_TE_409595 Chr4 34720629 34720628 - COPI2_LTR 4733 0.0003 (1/2982) 0 * Os_TE_409596 Os_TE_409589 Chr4 34718013 34718014 + MPING 430 0.0003 (1/2990) 0 * Os_TE_409588 Os_TE_409588 Chr4 34718011 34718010 - MPING 430 0.0003 (1/2989) 0 * Os_TE_409589 Os_TE_409585 Chr4 34716388 34716389 - STOWAWAY51_OS 246 0.0003 (1/2997) 0 * * Os_TE_409418 Chr4 34645977 34645976 - RIREX_LTR 8828 0.0007 (2/2986) 0 * * Os_TE_409402 Chr4 34640321 34640322 - RIRE3A_LTR 10580 0.0003 (1/2997) 0 * Os_TE_409401 Os_TE_409401 Chr4 34640317 34640316 + RIRE3A_LTR 10580 0.0003 (1/2997) 0 * Os_TE_409402 Os_TE_409396 Chr4 34630846 34630847 + TELIA 141 0.0003 (1/2989) 0 * Os_TE_409395 Os_TE_409395 Chr4 34630838 34630837 - TELIA 141 0.0003 (1/2990) 0 * Os_TE_409396 Os_TE_409393 Chr4 34626426 34626427 + COPIA2-LTR_OS 6433 0.0008 (1/1292) 0 * Os_TE_409392 Os_TE_409392 Chr4 34626422 34626421 - COPIA2-LTR_OS 6433 0.0008 (1/1297) 0 * Os_TE_409393 Os_TE_409390 Chr4 34625022 34625023 - COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_409389 Os_TE_409389 Chr4 34625018 34625017 + COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_409390 Os_TE_409387 Chr4 34623968 34623969 + MPING 430 0.0003 (1/2985) 0 * Os_TE_409386 Os_TE_409386 Chr4 34623966 34623965 - MPING 430 0.0003 (1/2982) 0 * Os_TE_409387 Os_TE_409357 Chr4 34611270 34611271 - CASTAWAY 364 0.5293 (1570/2966) 0 * Os_TE_409356 Os_TE_409356 Chr4 34611267 34611266 - ORSgTEMT00600304 361 0.5273 (1557/2953) 0 * Os_TE_409357 Os_TE_409332 Chr4 34603962 34603963 + ORSiTERTOOT00296 5553 0.0003 (1/2985) 0 * * Os_TE_409313 Chr4 34597497 34597498 - AMYLTP 383 0.0003 (1/2997) 0 * * Os_TE_409288 Chr4 34583175 34583176 - GYPSY-A_LTR 8951 0.0017 (5/2977) 0 * Os_TE_409287 Os_TE_409287 Chr4 34583171 34583170 + SZ-40LTR 2465 0.0017 (5/2982) 0 * Os_TE_409288 Os_TE_409202 Chr4 34564560 34564559 - AMYLTP 383 0.5971 (1780/2981) 0 * * Os_TE_409200 Chr4 34564375 34564374 - INDITTO 263 0.0007 (2/2970) 0 * * Os_TE_409184 Chr4 34558171 34558170 - ORSgTEMT02400179 221 0.0003 (1/2981) 0 * * Os_TE_409167 Chr4 34549096 34549097 - ORSiTERTOOT00402 2660 0.0003 (1/2972) 0 * * Os_TE_409165 Chr4 34548563 34548564 - ORSiTERTOOT00333 4719 0.0003 (1/2995) 0 * Os_TE_409164 Os_TE_409164 Chr4 34548560 34548559 + ORSiTERTOOT00333 4719 0.0003 (1/2991) 0 * Os_TE_409165 Os_TE_409118 Chr4 34532008 34532009 - COPIA2-LTR_OS 6433 0.0003 (1/2971) 0 * Os_TE_409117 Os_TE_409117 Chr4 34532004 34532003 + COPIA2-LTR_OS 6433 0.0003 (1/2975) 0 * Os_TE_409118 Os_TE_409113 Chr4 34530740 34530741 - MPING 430 0.0014 (4/2946) 0 * Os_TE_409112 Os_TE_409112 Chr4 34530738 34530737 + MPING 430 0.0014 (4/2951) 0 * Os_TE_409113 Os_TE_409104 Chr4 34528610 34528611 - COPI2_LTR 4733 0.0004 (1/2748) 0 * Os_TE_409103 Os_TE_409103 Chr4 34528606 34528605 + COPI2_LTR 4733 0.0004 (1/2748) 0 * Os_TE_409104 Os_TE_409091 Chr4 34524700 34524701 + COPIA2-LTR_OS 6433 0.0003 (1/2936) 0 * Os_TE_409090 Os_TE_409090 Chr4 34524696 34524695 - COPIA2-LTR_OS 6433 0.0003 (1/2946) 0 * Os_TE_409091 Os_TE_409057 Chr4 34501896 34501897 - CRM-LTR_OS 7749 0.0007 (2/2998) 0 * * Os_TE_409056 Chr4 34501787 34501788 - RIREX_LTR 8828 0.0008 (1/1307) 0 * Os_TE_409055 Os_TE_409055 Chr4 34501783 34501782 + RIREX_LTR 8828 0.0008 (1/1310) 0 * Os_TE_409056 Os_TE_409036 Chr4 34491884 34491885 + AMYLTP 383 0.5831 (1744/2991) 0 * Os_TE_409035 Os_TE_409035 Chr4 34491876 34491875 - AMYLTP 383 0.0052 (7/1339) 0 * Os_TE_409036 Os_TE_408999 Chr4 34467072 34467073 - WUJI 257 0.5965 (1721/2885) 0 * Os_TE_408998 Os_TE_408998 Chr4 34467070 34467069 - INDITTO 263 0.5994 (1724/2876) 0 * Os_TE_408999 Os_TE_408992 Chr4 34466618 34466619 - RETRO2_LTR 12874 0.0099 (29/2926) 0 * * Os_TE_408966 Chr4 34455043 34455044 + RIREX_LTR 8828 0.0003 (1/2994) 0 * Os_TE_408965 Os_TE_408965 Chr4 34455039 34455038 - RIREX_LTR 8828 0.0003 (1/2993) 0 * Os_TE_408966 Os_TE_408902 Chr4 34438637 34438636 + COPIA2-LTR_OS 6433 0.0007 (2/2984) 0 * * Os_TE_408894 Chr4 34433367 34433368 + COPIA2-LTR_OS 6433 0.0081 (24/2981) 0 * Os_TE_408893 Os_TE_408893 Chr4 34433363 34433362 - COPIA2-LTR_OS 6433 0.0084 (25/2986) 0 * Os_TE_408894 Os_TE_408892 Chr4 34433223 34433222 - STOWAWAY51_OS 246 0.0010 (3/2993) 0 * Os_TE_408891 Os_TE_408891 Chr4 34433220 34433221 + ORSgTEMT01601591 242 0.0010 (3/2988) 0 * Os_TE_408892 Os_TE_408887 Chr4 34427211 34427210 - TYPEM 227 0.5845 (1750/2994) 0 * * Os_TE_408878 Chr4 34421165 34421164 - SC-3_LTR 5748 0.0007 (2/2995) 0 * * Os_TE_408868 Chr4 34409907 34409908 - MuDR3_OS 8604 0.0003 (1/2994) 0 * * Os_TE_408864 Chr4 34405048 34405049 - SC-8_LTR 4951 0.0003 (1/2993) 0 * Os_TE_408863 Os_TE_408863 Chr4 34405044 34405043 + SC-8_LTR 4951 0.0003 (1/2990) 0 * Os_TE_408864 Os_TE_408855 Chr4 34401978 34401979 + ORSgTETNOOT01834 251 0.0007 (2/2997) 0 * Os_TE_408854 Os_TE_408854 Chr4 34401976 34401975 + ORSgTETNOOT01834 251 0.0007 (2/2996) 0 * Os_TE_408855 Os_TE_408852 Chr4 34401624 34401623 + COPI2_LTR 4733 0.0003 (1/2989) 0 * * Os_TE_408851 Chr4 34401595 34401596 - COPIA2-LTR_OS 6433 0.0131 (39/2975) 0 * * Os_TE_408842 Chr4 34398685 34398684 - NDNA1TNA_OS 334 0.0020 (6/2995) 0 * * Os_TE_408835 Chr4 34396699 34396700 + MERMITEJ 1498 0.0003 (1/2980) 0 * Os_TE_408834 Os_TE_408834 Chr4 34396691 34396690 + MERMITEJ 1498 0.0003 (1/2980) 0 * Os_TE_408835 Os_TE_408830 Chr4 34393287 34393286 + TWIF 586 0.0003 (1/2995) 0 * * Os_TE_408818 Chr4 34387871 34387870 + TWIF 586 0.0007 (2/2938) 0 * * Os_TE_408805 Chr4 34380027 34380028 + ORSgTERTOOT00009 12852 0.0003 (1/2984) 0 * Os_TE_408804 Os_TE_408804 Chr4 34380023 34380022 - RETRO2_LTR 12874 0.0003 (1/2976) 0 * Os_TE_408805 Os_TE_408795 Chr4 34375029 34375030 + HARB-1_OS 5166 0.0007 (2/2974) 0 * Os_TE_408794 Os_TE_408794 Chr4 34375027 34375026 - HARB-1_OS 5166 0.0007 (2/2975) 0 * Os_TE_408795 Os_TE_408789 Chr4 34373592 34373591 + CLOUD-7 495 0.5873 (1755/2988) 0 * * Os_TE_408788 Chr4 34373561 34373562 - RETROSAT2LTR 12796 0.0003 (1/2990) 0 * Os_TE_408787 Os_TE_408787 Chr4 34373559 34373558 + RETROSAT2LTR 12796 0.0003 (1/2903) 0 * Os_TE_408788 Os_TE_408785 Chr4 34372919 34372920 + AMYLTP 383 0.0003 (1/2964) 0 * Os_TE_408784 Os_TE_408784 Chr4 34372911 34372910 - AMYLTP 383 0.0003 (1/2963) 0 * Os_TE_408785 Os_TE_408781 Chr4 34372504 34372503 - STOWAWAY44_OS 240 0.0003 (1/2977) 0 * Os_TE_408780 Os_TE_408780 Chr4 34372501 34372502 - STOWAWAY44_OS 240 0.0003 (1/2994) 0 * Os_TE_408781 Os_TE_408775 Chr4 34369042 34369043 - MPING 430 0.0014 (4/2872) 0 * Os_TE_408774 Os_TE_408774 Chr4 34369040 34369039 + MPING 430 0.0010 (3/2876) 0 * Os_TE_408775 Os_TE_408752 Chr4 34363991 34363992 - MPING 430 0.0003 (1/2940) 0 * Os_TE_408751 Os_TE_408751 Chr4 34363989 34363988 + MPING 430 0.0003 (1/2946) 0 * Os_TE_408752 Os_TE_408739 Chr4 34361265 34361266 - F569 228 0.0013 (4/2982) 0 * Os_TE_408738 Os_TE_408738 Chr4 34361263 34361262 + F569 228 0.0013 (4/2983) 0 * Os_TE_408739 Os_TE_408708 Chr4 34355666 34355667 - MPING 430 0.0010 (3/2968) 0 * Os_TE_408707 Os_TE_408707 Chr4 34355664 34355663 + MPING 430 0.0010 (3/2967) 0 * Os_TE_408708 Os_TE_408676 Chr4 34338384 34338383 + NDNA1TNA_OS 334 0.0003 (1/2948) 0 * * Os_TE_408656 Chr4 34331546 34331545 + ORSgTEMT00100531 325 0.5432 (1621/2984) 0 * * Os_TE_408655 Chr4 34328389 34328388 + ORSgTEMT00502327 143 0.0017 (5/2999) 0 * * Os_TE_408651 Chr4 34326103 34325909 + STOWAWAY9_OS 235 0.4661 (1387/2976) 1 Intact * Os_TE_408638 Chr4 34313566 34313567 - HARB-1_OS 5166 0.0354 (106/2996) 0 * Os_TE_408637 Os_TE_408637 Chr4 34313564 34313563 + HARB-1_OS 5166 0.0360 (108/2998) 0 * Os_TE_408638 Os_TE_408588 Chr4 34302847 34303276 + MPING 430 0.0119 (35/2938) 1 Intact * Os_TE_408587 Chr4 34302836 34302837 - NDNA1TNA_OS 334 0.0017 (5/2952) 0 * * Os_TE_408583 Chr4 34297354 34297353 - STOWAWAY51_OS 246 0.0067 (20/2992) 0 * Os_TE_408582 Os_TE_408582 Chr4 34297348 34297349 + STOWAWAY51_OS 246 0.0064 (19/2991) 0 * Os_TE_408583 Os_TE_408568 Chr4 34296471 34296472 + ORSiTERTOOT00332 5395 0.0007 (2/2996) 0 * * Os_TE_408566 Chr4 34294603 34294604 - COPI2_LTR 4733 0.0003 (1/2988) 0 * Os_TE_408565 Os_TE_408565 Chr4 34294599 34294598 + COPI2_LTR 4733 0.0003 (1/2986) 0 * Os_TE_408566 Os_TE_408551 Chr4 34291916 34291915 - COPIA2-LTR_OS 6433 0.0004 (1/2809) 0 * * Os_TE_408517 Chr4 34269530 34269531 + SC-8_LTR 4951 0.0007 (2/2996) 0 * Os_TE_408516 Os_TE_408516 Chr4 34269526 34269525 - SC-8_LTR 4951 0.0007 (2/2998) 0 * Os_TE_408517 Os_TE_408500 Chr4 34265075 34254767 + SZ-55_LTR 10318 0.4830 (1448/2998) 1 Intact Os_TE_408498 Os_TE_408498 Chr4 34254767 34265075 - SZ-55_LTR 10318 0.4764 (1422/2985) 1 Intact Os_TE_408500 Os_TE_408496 Chr4 34252978 34252979 - OSTONOR1_LTR 6440 0.0007 (2/2996) 0 * Os_TE_408495 Os_TE_408495 Chr4 34252974 34252973 + OSTONOR1_LTR 6440 0.0007 (2/2993) 0 * Os_TE_408496 Os_TE_408493 Chr4 34251728 34251729 - RIREX_LTR 8828 0.0007 (2/2994) 0 * Os_TE_408492 Os_TE_408492 Chr4 34251724 34251723 + RIREX_LTR 8828 0.0007 (2/2994) 0 * Os_TE_408493 Os_TE_408470 Chr4 34233624 34233625 + MPING 430 0.0003 (1/2993) 0 * Os_TE_408469 Os_TE_408469 Chr4 34233622 34233621 - MPING 430 0.0003 (1/2991) 0 * Os_TE_408470 Os_TE_408467 Chr4 34233002 34233001 + ORSgTERT00200342 5828 0.0012 (1/843) -1 * * Os_TE_408466 Chr4 34232340 34232341 - MPING 430 0.0027 (8/2941) 0 * Os_TE_408465 Os_TE_408465 Chr4 34232338 34232337 + MPING 430 0.0031 (9/2917) 0 * Os_TE_408466 Os_TE_408453 Chr4 34229116 34229117 - INDITTO 263 0.0010 (3/2978) 0 * Os_TE_408452 Os_TE_408452 Chr4 34229114 34229113 + INDITTO 263 0.0010 (3/2974) 0 * Os_TE_408453 Os_TE_408445 Chr4 34227281 34227282 - STOWAWAY51_OS 246 0.0003 (1/2991) 0 * * Os_TE_408421 Chr4 34224067 34224066 + ORSgTEMT01601591 242 0.0003 (1/2993) 0 * Os_TE_408420 Os_TE_408420 Chr4 34224061 34224062 + STOWAWAY51_OS 246 0.0003 (1/2997) 0 * Os_TE_408421 Os_TE_408416 Chr4 34222369 34222370 - MPING 430 0.0003 (1/2980) 0 * Os_TE_408415 Os_TE_408415 Chr4 34222367 34222366 + MPING 430 0.0003 (1/2989) 0 * Os_TE_408416 Os_TE_408389 Chr4 34206934 34206933 - BAJIELTR 4500 0.0007 (2/2992) 0 * * Os_TE_408381 Chr4 34201534 34201535 - SZ-54_LTR 5203 0.0007 (2/2998) 0 * * Os_TE_408360 Chr4 34176855 34176856 + MPING 430 0.0003 (1/2890) 0 * Os_TE_408359 Os_TE_408359 Chr4 34176853 34176852 - MPING 430 0.0003 (1/2905) 0 * Os_TE_408360 Os_TE_408336 Chr4 34165064 34165065 + COPI2_LTR 4733 0.0003 (1/2984) 0 * Os_TE_408335 Os_TE_408335 Chr4 34165060 34165059 - COPI2_LTR 4733 0.0003 (1/2987) 0 * Os_TE_408336 Os_TE_408275 Chr4 34141605 34141606 - SC-3_LTR 5748 0.0007 (2/2999) 0 * Os_TE_408274 Os_TE_408274 Chr4 34141601 34141600 + ORSiTERTOOT00296 5553 0.0007 (2/2998) 0 * Os_TE_408275 Os_TE_408247 Chr4 34135695 34135696 + MPING 430 0.0003 (1/2867) 0 * Os_TE_408246 Os_TE_408246 Chr4 34135693 34135692 - MPING 430 0.0003 (1/2883) 0 * Os_TE_408247 Os_TE_408240 Chr4 34135207 34135206 - DITAILA 257 0.0013 (4/2991) 0 * * Os_TE_408239 Chr4 34135026 34135027 - MPING 430 0.0010 (3/2992) 0 * Os_TE_408238 Os_TE_408238 Chr4 34135024 34135023 + MPING 430 0.0010 (3/2993) 0 * Os_TE_408239 Os_TE_408237 Chr4 34133747 34133748 + MPING 430 0.0003 (1/2883) 0 * * Os_TE_408226 Chr4 34131163 34131164 + STOWAWAY44_OS 240 0.0004 (1/2805) 0 * * Os_TE_408197 Chr4 34107191 34107192 + ORSgTETNOOT00908 242 0.0003 (1/2997) 0 * * Os_TE_408119 Chr4 34061623 34061622 + ORSiTERTOOT00034 791 0.0003 (1/2995) 0 * * Os_TE_408108 Chr4 34056431 34056432 + SC-8_LTR 4951 0.0020 (6/2990) 0 * Os_TE_408107 Os_TE_408107 Chr4 34056427 34056426 - SC-8_LTR 4951 0.0020 (6/2993) 0 * Os_TE_408108 Os_TE_408029 Chr4 34017275 34017274 - HATOS1 3488 0.8918 (2670/2994) 0 * * Os_TE_408024 Chr4 34016583 34016584 - RIREX_LTR 8828 0.0003 (1/2921) 0 * Os_TE_408023 Os_TE_408023 Chr4 34016579 34016578 + RIREX_LTR 8828 0.0003 (1/2932) 0 * Os_TE_408024 Os_TE_408019 Chr4 34013253 34013254 - Cassandra_OS-LTR 764 0.0011 (1/883) 0 * * Os_TE_407965 Chr4 33982688 33982689 - HARB-1_OS 5166 0.0020 (6/2953) 0 * * Os_TE_407948 Chr4 33973530 33973531 - FOCUS 257 0.0010 (3/2992) 0 * Os_TE_407947 Os_TE_407947 Chr4 33973529 33973528 + FOCUS 257 0.0010 (3/2996) 0 * Os_TE_407948 Os_TE_407933 Chr4 33962768 33962769 - TRUNCATOR2_LTR 2904 0.0003 (1/2974) 0 * Os_TE_407932 Os_TE_407932 Chr4 33962764 33962763 + ORSiTERTOOT00028 8600 0.0003 (1/2973) 0 * Os_TE_407933 Os_TE_407903 Chr4 33949638 33949639 - SC-3_LTR 5748 0.0003 (1/2986) 0 * Os_TE_407902 Os_TE_407902 Chr4 33949634 33949633 + ORSiTERTOOT00296 5553 0.0003 (1/2977) 0 * Os_TE_407903 Os_TE_407898 Chr4 33947262 33947263 + MERMITED 1572 0.0138 (41/2966) 0 * Os_TE_407897 Os_TE_407897 Chr4 33947260 33947259 + MERMITED 1572 0.0108 (32/2952) 0 * Os_TE_407898 Os_TE_407879 Chr4 33934460 33934461 + RETROSAT2LTR 12796 0.0013 (4/2970) 0 * Os_TE_407878 Os_TE_407878 Chr4 33934458 33934457 - RETROSAT2LTR 12796 0.0017 (5/2971) 0 * Os_TE_407879 Os_TE_407824 Chr4 33919176 33919177 + ORSgTEMT05000092 279 0.0017 (5/2996) 0 * Os_TE_407823 Os_TE_407823 Chr4 33919174 33919173 - SUSU 279 0.0017 (5/2993) 0 * Os_TE_407824 Os_TE_407814 Chr4 33917606 33917607 + MPING 430 0.0013 (4/2984) 0 * Os_TE_407813 Os_TE_407813 Chr4 33917604 33917603 - MPING 430 0.0010 (3/2983) 0 * Os_TE_407814 Os_TE_407810 Chr4 33916473 33916474 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_407809 Os_TE_407809 Chr4 33916469 33916468 - COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_407810 Os_TE_407807 Chr4 33914893 33914894 - NDNA1TNA_OS 334 0.0017 (5/2997) 0 * Os_TE_407806 Os_TE_407806 Chr4 33914891 33914890 + ORSgTEMT00100531 325 0.0017 (5/2996) 0 * Os_TE_407807 Os_TE_407779 Chr4 33895611 33895610 - DNAUN1_OS 408 0.0076 (2/264) -1 * * Os_TE_407777 Chr4 33887137 33887138 - RIREX_LTR 8828 0.0003 (1/2997) 0 * Os_TE_407776 Os_TE_407776 Chr4 33887133 33887132 + RIREX_LTR 8828 0.0003 (1/2996) 0 * Os_TE_407777 Os_TE_407772 Chr4 33884887 33884888 - RETROSAT4_LTR 13504 0.0043 (13/2995) 0 * Os_TE_407771 Os_TE_407771 Chr4 33884883 33884882 + SZ-35LTR 3853 0.0043 (13/2993) 0 * Os_TE_407772 Os_TE_407769 Chr4 33884081 33884082 - COPI2_LTR 4733 0.0003 (1/2990) 0 * Os_TE_407768 Os_TE_407768 Chr4 33884077 33884076 + COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_407769 Os_TE_407712 Chr4 33862451 33862450 - STOWAWAY51_OS 246 0.0003 (1/2961) 0 * * Os_TE_407662 Chr4 33831458 33831459 - COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_407661 Os_TE_407661 Chr4 33831454 33831453 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_407662 Os_TE_407647 Chr4 33818708 33818707 + ORSgTETNOOT02316 263 0.0003 (1/2965) 0 * * Os_TE_407622 Chr4 33803939 33803938 + STOWAWAY51_OS 246 0.0003 (1/2992) 0 * * Os_TE_407609 Chr4 33799651 33799652 + ORSgTETNOOT01834 251 0.0007 (2/2951) 0 * Os_TE_407608 Os_TE_407608 Chr4 33799649 33799648 + ORSgTETNOOT01834 251 0.0007 (2/2967) 0 * Os_TE_407609 Os_TE_407601 Chr4 33798095 33798096 + HARB-1_OS 5166 0.0003 (1/2991) 0 * Os_TE_407600 Os_TE_407600 Chr4 33798093 33798092 - HARB-1_OS 5166 0.0003 (1/2988) 0 * Os_TE_407601 Os_TE_407554 Chr4 33766732 33766733 + ORSgTERT00100350 275 0.0003 (1/2972) 0 * * Os_TE_407535 Chr4 33758344 33758345 + MPING 430 0.0024 (7/2965) 0 * Os_TE_407534 Os_TE_407534 Chr4 33758342 33758341 - MPING 430 0.0024 (7/2947) 0 * Os_TE_407535 Os_TE_407532 Chr4 33755418 33755417 + ORSgTEMT00700017 386 0.0003 (1/2870) 0 * * Os_TE_407531 Chr4 33750336 33750337 + ORSiTERTOOT00226 792 0.0003 (1/2988) 0 * * Os_TE_407520 Chr4 33743198 33743199 - SC-8_LTR 4951 0.0003 (1/2991) 0 * Os_TE_407519 Os_TE_407519 Chr4 33743194 33743193 + SC-8_LTR 4951 0.0003 (1/2994) 0 * Os_TE_407520 Os_TE_407518 Chr4 33741657 33741658 + ORSiTERTOOT00296 5553 0.0003 (1/2995) 0 * Os_TE_407517 Os_TE_407517 Chr4 33741653 33741652 - SC-3_LTR 5748 0.0003 (1/2995) 0 * Os_TE_407518 Os_TE_407510 Chr4 33734628 33734629 + ORSiTERTOOT00367 5639 0.0003 (1/2977) 0 * Os_TE_407509 Os_TE_407509 Chr4 33734624 33734623 - ORSiTERTOOT00367 5639 0.0003 (1/2988) 0 * Os_TE_407510 Os_TE_407506 Chr4 33731565 33731566 - COPI2_LTR 4733 0.0003 (1/2985) 0 * Os_TE_407505 Os_TE_407505 Chr4 33731561 33731560 + COPI2_LTR 4733 0.0003 (1/2986) 0 * Os_TE_407506 Os_TE_407498 Chr4 33726684 33726685 - OSCOPIA2_LTR 5476 0.7660 (1879/2453) 0 * * Os_TE_407494 Chr4 33724854 33724855 - MPING 430 0.0003 (1/2991) 0 * Os_TE_407493 Os_TE_407493 Chr4 33724852 33724851 + MPING 430 0.0003 (1/2992) 0 * Os_TE_407494 Os_TE_407479 Chr4 33720527 33720528 + ORSiTERTOOT00296 5553 0.0003 (1/2995) 0 * Os_TE_407478 Os_TE_407478 Chr4 33720523 33720522 - SC-3_LTR 5748 0.0003 (1/2995) 0 * Os_TE_407479 Os_TE_407454 Chr4 33696845 33696844 - STOWAWAY51_OS 246 0.5972 (1775/2972) 0 * * Os_TE_407437 Chr4 33693139 33693138 - COPI2_LTR 4733 0.0013 (4/2989) 0 * * Os_TE_407410 Chr4 33683575 33683574 - STOWAWAY51_OS 246 0.0003 (1/2991) 0 * Os_TE_407409 Os_TE_407409 Chr4 33683572 33683573 - STOWAWAY51_OS 246 0.0003 (1/2993) 0 * Os_TE_407410 Os_TE_407382 Chr4 33661798 33661799 + AMYLTP 383 0.0017 (5/2980) 0 * Os_TE_407381 Os_TE_407381 Chr4 33661790 33661789 - AMYLTP 383 0.0017 (5/2969) 0 * Os_TE_407382 Os_TE_407369 Chr4 33657299 33657300 - MPING 430 0.0017 (5/2999) 0 * Os_TE_407368 Os_TE_407368 Chr4 33657297 33657296 + MPING 430 0.0017 (5/2994) 0 * Os_TE_407369 Os_TE_407359 Chr4 33654932 33654933 - RETRO2_LTR 12874 0.5813 (1734/2983) 0 * Os_TE_407358 Os_TE_407358 Chr4 33654928 33654927 + RETRO2_LTR 12874 0.5834 (1746/2993) 0 * Os_TE_407359 Os_TE_407333 Chr4 33638982 33638983 + SINE03_OS 360 0.0007 (2/2931) 0 * * Os_TE_407303 Chr4 33623747 33623748 - SC-8_LTR 4951 0.0003 (1/2995) 0 * Os_TE_407302 Os_TE_407302 Chr4 33623743 33623742 + SC-8_LTR 4951 0.0003 (1/2995) 0 * Os_TE_407303 Os_TE_407301 Chr4 33622765 33622764 + STOWAWAY51_OS 246 0.0287 (86/2995) 0 * Os_TE_407300 Os_TE_407300 Chr4 33622759 33622760 + ORSgTEMT01601591 242 0.0301 (90/2993) 0 * Os_TE_407301 Os_TE_407274 Chr4 33609304 33609303 - ORSgTEMT02400246 177 0.0003 (1/2926) 0 * * Os_TE_407265 Chr4 33607286 33606429 - MUDRN1_OS 764 0.4271 (1266/2964) 1 Intact * Os_TE_407191 Chr4 33569704 33569705 - SZ-40LTR 2465 0.0013 (4/2967) 0 * * Os_TE_407189 Chr4 33568800 33568801 - SC-3_LTR 5748 0.0030 (9/2988) 0 * Os_TE_407188 Os_TE_407188 Chr4 33568796 33568795 + ORSiTERTOOT00296 5553 0.0034 (10/2984) 0 * Os_TE_407189 Os_TE_407167 Chr4 33551624 33551625 - RIREX_LTR 8828 0.0007 (2/2984) 0 * Os_TE_407166 Os_TE_407166 Chr4 33551620 33551619 + RIREX_LTR 8828 0.0007 (2/2988) 0 * Os_TE_407167 Os_TE_407141 Chr4 33529178 33529179 - MUDRN1_OS 764 0.0003 (1/2981) 0 * Os_TE_407140 Os_TE_407140 Chr4 33529170 33529169 + MUDRN1_OS 764 0.0007 (2/2981) 0 * Os_TE_407141 Os_TE_407092 Chr4 33509305 33509306 + COPI2_LTR 4733 0.0003 (1/2980) 0 * Os_TE_407091 Os_TE_407091 Chr4 33509301 33509300 - COPI2_LTR 4733 0.0003 (1/2979) 0 * Os_TE_407092 Os_TE_407065 Chr4 33495525 33495526 + ENSPM4_OS 11610 0.0003 (1/2991) 0 * * Os_TE_407052 Chr4 33487367 33487368 - COPIA2-LTR_OS 6433 0.0050 (15/2982) 0 * Os_TE_407051 Os_TE_407051 Chr4 33487363 33487362 + COPIA2-LTR_OS 6433 0.0047 (14/2978) 0 * Os_TE_407052 Os_TE_407050 Chr4 33485106 33485107 + ORSgTETNOOT02316 263 0.0804 (237/2949) 0 * Os_TE_407049 Os_TE_407049 Chr4 33485104 33485103 - INDITTO 263 0.0808 (239/2958) 0 * Os_TE_407050 Os_TE_407006 Chr4 33465919 33465920 + COPIA2-LTR_OS 6433 0.0244 (70/2873) 0 * Os_TE_407005 Os_TE_407005 Chr4 33465915 33465914 - COPIA2-LTR_OS 6433 0.0368 (107/2911) 0 * Os_TE_407006 Os_TE_406997 Chr4 33457322 33457070 - ORSgTEMT00900145 249 0.7888 (2353/2983) 1 Intact * Os_TE_406960 Chr4 33448346 33448347 + OLO24 345 0.2236 (667/2983) 0 * Os_TE_406959 Os_TE_406959 Chr4 33448344 33448343 - OLO24 345 0.2271 (678/2985) 0 * Os_TE_406960 Os_TE_406954 Chr4 33447256 33447257 - MPING 430 0.0003 (1/2981) 0 * Os_TE_406953 Os_TE_406953 Chr4 33447254 33447253 + MPING 430 0.0003 (1/2979) 0 * Os_TE_406954 Os_TE_406952 Chr4 33446453 33446452 - STOWAWAY51_OS 246 0.0003 (1/2994) 0 * Os_TE_406951 Os_TE_406951 Chr4 33446447 33446448 + STOWAWAY51_OS 246 0.0003 (1/2996) 0 * Os_TE_406952 Os_TE_406949 Chr4 33444700 33444462 + ORSgTEMT01602181 239 0.4265 (1264/2964) 1 Intact Os_TE_406948 Os_TE_406948 Chr4 33444461 33444700 - ORSgTEMT01601432 239 0.4141 (1207/2915) 1 Intact Os_TE_406949 Os_TE_406946 Chr4 33443635 33443636 + COPIA2-LTR_OS 6433 0.0003 (1/2931) 0 * * Os_TE_406932 Chr4 33441627 33441626 + F770 284 0.0033 (10/2998) 0 * * Os_TE_406906 Chr4 33426428 33426190 + ORSgTEMT01601934 207 0.4772 (1289/2701) 1 Intact Os_TE_406905 Os_TE_406905 Chr4 33426190 33426422 - ORSgTEMT01601834 234 0.4780 (1292/2703) 0.95 Intact Os_TE_406906 Os_TE_406904 Chr4 33425447 33425448 + RETROSAT4_LTR 13504 0.3819 (888/2325) 0 * Os_TE_406903 Os_TE_406903 Chr4 33425443 33425442 - RETROSAT4_LTR 13504 0.4266 (1270/2977) 0 * Os_TE_406904 Os_TE_406866 Chr4 33411739 33411501 - ORSgTEMT01601432 239 0.3500 (940/2686) 1 Intact Os_TE_406865 Os_TE_406865 Chr4 33411501 33411739 - ORSgTEMT01601696 238 0.3771 (1052/2790) 1 Intact Os_TE_406866 Os_TE_406860 Chr4 33410661 33410662 - AMYLTP 383 0.4908 (1435/2924) 0 * Os_TE_406859 Os_TE_406859 Chr4 33410653 33410652 + AMYLTP 383 0.4892 (1427/2917) 0 * Os_TE_406860 Os_TE_406857 Chr4 33410334 33410333 - RETROSAT4_LTR 13504 0.0007 (2/2990) 0 * * Os_TE_406830 Chr4 33402608 33402607 + INDITTO 263 0.0010 (3/2984) 0 * * Os_TE_406825 Chr4 33402344 33402345 + MPING 430 0.0007 (2/2993) 0 * * Os_TE_406816 Chr4 33397221 33397222 + ORSiTERTOOT00296 5553 0.0003 (1/2993) 0 * Os_TE_406815 Os_TE_406815 Chr4 33397217 33397216 - SC-3_LTR 5748 0.0003 (1/2993) 0 * Os_TE_406816 Os_TE_406812 Chr4 33394407 33394408 + MuDR3_OS 8604 0.6260 (1831/2925) 0 * Os_TE_406811 Os_TE_406811 Chr4 33394399 33394398 - MuDR3_OS 8604 0.6287 (1844/2933) 0 * Os_TE_406812 Os_TE_406809 Chr4 33392258 33392259 + COPI2_LTR 4733 0.0027 (8/2998) 0 * Os_TE_406808 Os_TE_406808 Chr4 33392254 33392253 - COPI2_LTR 4733 0.0027 (8/2998) 0 * Os_TE_406809 Os_TE_406806 Chr4 33388644 33388643 - STOWAWAY44_OS 240 0.0003 (1/2987) 0 * * Os_TE_406778 Chr4 33375726 33375725 + BUHUI 375 0.0010 (1/1042) 0 * * Os_TE_406735 Chr4 33358949 33358950 - SZ-35LTR 3853 0.0010 (3/2884) 0 * * Os_TE_406681 Chr4 33341784 33341785 - ORSgTEMT02400246 177 0.0599 (179/2989) 0 * * Os_TE_406648 Chr4 33328579 33328580 + COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_406647 Os_TE_406647 Chr4 33328575 33328574 - COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_406648 Os_TE_406646 Chr4 33326845 33326844 - TRUNCATOR 2918 0.5045 (1513/2999) 0 * * Os_TE_406627 Chr4 33320896 33320895 - COPIA2-LTR_OS 6433 0.0007 (2/2999) 0 * * Os_TE_406602 Chr4 33313864 33313865 + STOWAWAY50_OS 174 0.6355 (1820/2864) 0 * * Os_TE_406600 Chr4 33313645 33313490 + ORSgTEMT01701265 147 0.4005 (1071/2674) 1 Intact Os_TE_406596 Os_TE_406596 Chr4 33313483 33313652 - ORSgTEMT01701254 154 0.4069 (1132/2782) 1 Intact Os_TE_406600 Os_TE_406590 Chr4 33310567 33310232 + ORSgTEMT00101341 314 0.4058 (1215/2994) 1 Intact * Os_TE_406586 Chr4 33307048 33307049 + OLO24 345 0.0017 (5/2919) 0 * * Os_TE_406583 Chr4 33306296 33306295 + STOWAWAY51_OS 246 0.5993 (1760/2937) 0 * Os_TE_406582 Os_TE_406582 Chr4 33306287 33306288 - STOWAWAY51_OS 246 0.5859 (1682/2871) 0 * Os_TE_406583 Os_TE_406572 Chr4 33304883 33304749 + ORSgTEMT01701388 146 0.4296 (1217/2833) 1 Intact Os_TE_406569 Os_TE_406569 Chr4 33304751 33304881 - STOWAWAY1_OS 149 0.4190 (1208/2883) 1 Intact Os_TE_406572 Os_TE_406568 Chr4 33304519 33304520 + MPING 430 0.0136 (30/2211) 0 * Os_TE_406567 Os_TE_406567 Chr4 33304517 33304516 - MPING 430 0.0102 (30/2951) 0 * Os_TE_406568 Os_TE_406566 Chr4 33304142 33303916 - F569 228 0.4202 (1225/2915) 1 Intact * Os_TE_406561 Chr4 33303679 33303438 + STOWAWAY51_OS 246 0.4022 (1187/2951) 1 Intact Os_TE_406558 Os_TE_406558 Chr4 33303438 33303677 - STOWAWAY51_OS 246 0.4090 (1209/2956) 1 Intact Os_TE_406561 Os_TE_406556 Chr4 33303030 33303292 - ORSgTETNOOT00951 263 0.4065 (1211/2979) 1 Intact * Os_TE_406553 Chr4 33302749 33302512 - ORSgTEMT01600639 228 0.4068 (1213/2982) 1 Intact Os_TE_406552 Os_TE_406552 Chr4 33302512 33302749 - ORSgTEMT01601208 238 0.4015 (1186/2954) 1 Intact Os_TE_406553 Os_TE_406539 Chr4 33300988 33300733 + ORSgTEMT00901844 250 0.4073 (1211/2973) 1 Intact Os_TE_406538 Os_TE_406538 Chr4 33300733 33300988 - ORSgTEMT00900099 250 0.4230 (1216/2875) 1 Intact Os_TE_406539 Os_TE_406537 Chr4 33300525 33300263 - ORSgTETNOOT02000 263 0.4095 (1215/2967) 1 Intact * Os_TE_406520 Chr4 33298524 33298670 - ORSgTETNOOT00118 134 0.4242 (1218/2871) 1 Intact * Os_TE_406518 Chr4 33297789 33297552 - ORSgTEMT01601432 239 0.4048 (1190/2940) 1 Intact * Os_TE_406516 Chr4 33296667 33296666 + ORSgTEMT00502452 153 0.5922 (1686/2847) 0 * * Os_TE_406515 Chr4 33296261 33296113 + ORSgTEMT00500610 153 0.5209 (1171/2248) 1 Intact Os_TE_406512 Os_TE_406512 Chr4 33296111 33296256 - ORSgTEMT00500026 147 0.4896 (1230/2512) 1 Intact Os_TE_406515 Os_TE_406510 Chr4 33295885 33295761 - ORSgTEMT00501882 134 0.4242 (1228/2895) 1 Intact * Os_TE_406508 Chr4 33295506 33295367 + ORSgTETNOOT00317 139 0.4692 (1240/2643) 1 Intact Os_TE_406507 Os_TE_406507 Chr4 33295365 33295504 + ORSgTEMT00501356 145 0.8957 (1236/1380) 1 Intact Os_TE_406508 Os_TE_406503 Chr4 33294905 33294906 + RPO_OS 1983 0.0038 (6/1590) 0 * Os_TE_406502 Os_TE_406502 Chr4 33294898 33294897 - RPO_OS 1983 0.4554 (1247/2738) 0 * Os_TE_406503 Os_TE_406500 Chr4 33294279 33294280 - MPING 430 0.0008 (2/2662) 0 * Os_TE_406499 Os_TE_406499 Chr4 33294277 33294276 + MPING 430 0.0010 (2/1908) 0 * Os_TE_406500 Os_TE_406490 Chr4 33292853 33265306 - RETROSAT2LTRA 3112 0.4195 (1228/2927) 1 Intact Os_TE_406482 Os_TE_406482 Chr4 33265306 33292853 + RETROSAT3_LTR 11537 0.3902 (1132/2901) 1 Intact Os_TE_406490 Os_TE_406480 Chr4 33264733 33264732 + BAJIELTR 4500 0.6284 (1818/2893) 0 * * Os_TE_406477 Chr4 33264588 33264589 - STOWAWAY11_OS 292 0.6216 (1802/2899) 0 * * Os_TE_406475 Chr4 33264521 33264284 - ORSgTEMT01600639 228 0.3953 (1118/2828) 1 Intact * Os_TE_406462 Chr4 33262892 33262893 - STOWAWAY44_OS 240 0.6049 (1791/2961) 0 * * Os_TE_406459 Chr4 33261445 33262803 - MERMITED 1572 0.4897 (1194/2438) 1 Intact * Os_TE_406453 Chr4 33257832 33256663 - RMU1A23 4144 0.3965 (1171/2953) 1 Intact * Os_TE_406419 Chr4 33251462 33251463 - TYPEM 227 0.0007 (2/2995) 0 * Os_TE_406418 Os_TE_406418 Chr4 33251461 33251460 - ORSgTEMT02400179 221 0.0007 (2/2993) 0 * Os_TE_406419 Os_TE_406417 Chr4 33249392 33249391 - ORSgTEMT01701521 154 0.0003 (1/2979) 0 * * Os_TE_406414 Chr4 33244146 33231289 - RETRO1_LTR 8314 0.4060 (1203/2963) 1 Intact Os_TE_406413 Os_TE_406413 Chr4 33231289 33244146 + RETRO1_LTR 8314 0.4107 (1218/2966) 1 Intact Os_TE_406414 Os_TE_406412 Chr4 33230968 33230969 - SZ-67LTR 1540 0.0020 (6/2972) 0 * Os_TE_406411 Os_TE_406411 Chr4 33230964 33230963 + SZ-67LTR 1540 0.0013 (4/2967) 0 * Os_TE_406412 Os_TE_406401 Chr4 33224350 33224351 - ORSgTEMT00700002 381 0.0003 (1/2988) 0 * Os_TE_406400 Os_TE_406400 Chr4 33224348 33224347 + MUDRN5_OS 374 0.0003 (1/2989) 0 * Os_TE_406401 Os_TE_406353 Chr4 33208223 33208222 - RETRO2_LTR 12874 0.5259 (1505/2862) 0 * * Os_TE_406332 Chr4 33198088 33198089 + ORSgTETNOOT01668 244 0.0013 (4/2981) 0 * * Os_TE_406331 Chr4 33197934 33197935 - SZ-55_LTR 10318 0.0010 (3/2984) 0 * Os_TE_406330 Os_TE_406330 Chr4 33197930 33197929 + SZ-55_LTR 10318 0.0010 (3/2983) 0 * Os_TE_406331 Os_TE_406302 Chr4 33188210 33188211 + ORSgTEMT01701668 154 0.0031 (9/2941) 0 * * Os_TE_406299 Chr4 33186839 33186838 - ORSgTEMT00700002 381 0.0003 (1/2975) 0 * * Os_TE_406297 Chr4 33185883 33185884 + ORSiTERTOOT00381 4988 0.0003 (1/2979) 0 * * Os_TE_406268 Chr4 33166739 33166738 + STOWAWAY51_OS 246 0.0003 (1/2993) 0 * Os_TE_406267 Os_TE_406267 Chr4 33166733 33166734 - STOWAWAY51_OS 246 0.0003 (1/2989) 0 * Os_TE_406268 Os_TE_406245 Chr4 33158653 33158654 - COPI2_LTR 4733 0.0020 (6/2974) 0 * Os_TE_406244 Os_TE_406244 Chr4 33158649 33158648 + COPI2_LTR 4733 0.0020 (6/2977) 0 * Os_TE_406245 Os_TE_406239 Chr4 33157788 33157789 - ORSiTERT00200156 9145 0.0003 (1/2987) 0 * * Os_TE_406238 Chr4 33157357 33157356 + STOWAWAY44_OS 240 0.0003 (1/2992) 0 * * Os_TE_406214 Chr4 33140052 33140053 - MPING 430 0.0003 (1/2877) 0 * Os_TE_406213 Os_TE_406213 Chr4 33140050 33140049 + MPING 430 0.0003 (1/2858) 0 * Os_TE_406214 Os_TE_406210 Chr4 33138211 33138212 + F770 284 0.5383 (1611/2993) 0 * Os_TE_406209 Os_TE_406209 Chr4 33138209 33138208 - F770 284 0.5376 (1610/2995) 0 * Os_TE_406210 Os_TE_406168 Chr4 33122659 33122660 - F770 284 0.0030 (9/2996) 0 * Os_TE_406167 Os_TE_406167 Chr4 33122657 33122656 + F770 284 0.0030 (9/2997) 0 * Os_TE_406168 Os_TE_406159 Chr4 33118153 33118152 + COPI2_LTR 4733 0.0003 (1/2953) 0 * * Os_TE_406142 Chr4 33108597 33108598 + RIRE2_LTR 11306 0.0027 (8/2988) 0 * Os_TE_406141 Os_TE_406141 Chr4 33108593 33108592 - RIRE2_LTR 11306 0.0030 (9/2983) 0 * Os_TE_406142 Os_TE_406123 Chr4 33100577 33100578 - OSTE24 683 0.0027 (8/2992) 0 * Os_TE_406122 Os_TE_406122 Chr4 33100567 33100566 - OSTE24 683 0.0027 (8/2993) 0 * Os_TE_406123 Os_TE_406112 Chr4 33091305 33091306 - ORSgTERT00201216 11284 0.0033 (10/2992) 0 * Os_TE_406111 Os_TE_406111 Chr4 33091301 33091300 - RIRE2_LTR 11306 0.0033 (10/2996) 0 * Os_TE_406112 Os_TE_406092 Chr4 33086640 33086641 + SZ-52_LTR 13107 0.0020 (6/2962) 0 * Os_TE_406091 Os_TE_406091 Chr4 33086636 33086635 - SZ-52_LTR 13107 0.0017 (5/2956) 0 * Os_TE_406092 Os_TE_406088 Chr4 33080328 33080327 - STOWAWAY51_OS 246 0.0003 (1/2998) 0 * Os_TE_406087 Os_TE_406087 Chr4 33080325 33080326 - STOWAWAY51_OS 246 0.0003 (1/2997) 0 * Os_TE_406088 Os_TE_406086 Chr4 33080212 33080213 + MPING 430 0.0003 (1/2999) 0 * Os_TE_406085 Os_TE_406085 Chr4 33080210 33080209 - MPING 430 0.0003 (1/2999) 0 * Os_TE_406086 Os_TE_406063 Chr4 33067093 33067094 + SINE1OS 127 0.7361 (2192/2978) 0 * * Os_TE_406059 Chr4 33065168 33064084 - RETRO2_LTR 12874 0.1907 (527/2764) 1 Solo_LTR Os_TE_406056 Os_TE_406056 Chr4 33064084 33065168 + RETRO2A_LTR 12895 0.1752 (523/2985) 1 Solo_LTR Os_TE_406059 Os_TE_406054 Chr4 33063165 33063164 - MPING 430 0.0003 (1/2990) 0 * * Os_TE_406053 Chr4 33062651 33062652 - ORSgTETNOOT00053 263 0.0017 (5/2977) 0 * * Os_TE_406041 Chr4 33058295 33058296 + ORSgTETNOOT00032 218 0.0094 (28/2979) 0 * * Os_TE_406040 Chr4 33058151 33058152 + ORSgTETNOOT00032 218 0.0758 (227/2993) 0 * * Os_TE_406035 Chr4 33055473 33055474 + NDNA1TNA_OS 334 0.0611 (183/2993) 0 * Os_TE_406034 Os_TE_406034 Chr4 33055472 33055471 - NDNA1TNA_OS 334 0.0599 (179/2989) 0 * Os_TE_406035 Os_TE_406033 Chr4 33055160 33055161 + ENSPM4_OS 11610 0.0324 (97/2993) 0 * * Os_TE_406031 Chr4 33054507 33054506 + TRUNCATOR 2918 0.1918 (186/970) 0 * Os_TE_406030 Os_TE_406030 Chr4 33054506 33054507 - TRUNCATOR 2918 0.0601 (180/2994) 0 * Os_TE_406031 Os_TE_406017 Chr4 33047857 33047856 + INDITTO 263 0.0007 (2/2995) 0 * * Os_TE_406008 Chr4 33045921 33032947 - RETRO2_LTR 12874 0.2756 (818/2968) 1 Intact * Os_TE_405998 Chr4 33032826 33044851 + RETRO2_LTR 12874 0.2728 (809/2966) 1 Intact * Os_TE_405992 Chr4 33022297 33021868 + MPING 430 0.0124 (37/2992) 1 Intact Os_TE_405991 Os_TE_405991 Chr4 33021868 33022297 - MPING 430 0.0120 (36/2993) 1 Intact Os_TE_405992 Os_TE_405990 Chr4 33021463 33021462 + ORSiTERTOOT00226 792 0.0050 (15/2975) 0 * * Os_TE_405975 Chr4 33019671 33019672 - INDITTO 263 0.7174 (2107/2937) 0 * Os_TE_405974 Os_TE_405974 Chr4 33019669 33019668 - ORSgTETNOOT01337 247 0.7201 (2153/2990) 0 * Os_TE_405975 Os_TE_405973 Chr4 33019356 33019357 + RETRO2_LTR 12874 0.0014 (4/2824) 0 * Os_TE_405972 Os_TE_405972 Chr4 33019352 33019351 - RETRO2_LTR 12874 0.0015 (4/2721) 0 * Os_TE_405973 Os_TE_405970 Chr4 33018366 33018367 + SZ-9LTR 965 0.0726 (215/2963) 0 * Os_TE_405969 Os_TE_405969 Chr4 33018362 33018361 - SZ-9LTR 965 0.0764 (227/2973) 0 * Os_TE_405970 Os_TE_405968 Chr4 33017867 33017868 + QINNIU 528 0.0037 (11/2992) 0 * Os_TE_405967 Os_TE_405967 Chr4 33017860 33017859 - HATOS1 3488 0.0033 (10/2990) 0 * Os_TE_405968 Os_TE_405964 Chr4 33016129 33016130 + RIRE2_LTR 11306 0.0037 (11/2951) 0 * Os_TE_405963 Os_TE_405963 Chr4 33016125 33016124 - RIRE2_LTR 11306 0.0037 (11/2949) 0 * Os_TE_405964 Os_TE_405958 Chr4 33012085 33012086 + ORSgTEMT00600272 361 0.0010 (3/2990) 0 * Os_TE_405957 Os_TE_405957 Chr4 33012080 33012079 + ORSgTEMT00600376 329 0.0010 (3/2990) 0 * Os_TE_405958 Os_TE_405956 Chr4 33011623 33011624 + TYPEM 227 0.0003 (1/2992) 0 * Os_TE_405955 Os_TE_405955 Chr4 33011621 33011620 - TYPEM 227 0.0003 (1/2991) 0 * Os_TE_405956 Os_TE_405945 Chr4 33005230 33005231 + RETRO1_LTR 8314 0.0177 (53/2987) 0 * * Os_TE_405939 Chr4 33003544 33003545 - TYPEM 227 0.0711 (213/2996) 0 * Os_TE_405938 Os_TE_405938 Chr4 33003543 33003542 - ORSgTEMT02400179 221 0.0730 (219/2999) 0 * Os_TE_405939 Os_TE_405937 Chr4 33003118 33003117 - STOWAWAY44_OS 240 0.0003 (1/2959) 0 * Os_TE_405936 Os_TE_405936 Chr4 33003115 33003116 - STOWAWAY51_OS 246 0.0003 (1/2989) 0 * Os_TE_405937 Os_TE_405935 Chr4 33002938 33002939 + COPIA2-LTR_OS 6433 0.0033 (10/2995) 0 * Os_TE_405934 Os_TE_405934 Chr4 33002934 33002933 - COPIA2-LTR_OS 6433 0.0033 (10/2995) 0 * Os_TE_405935 Os_TE_405933 Chr4 33001774 33001775 + STOWAWAY44_OS 240 0.0003 (1/2945) 0 * * Os_TE_405927 Chr4 33000702 33000703 - ORSiTERTOOT00074 4935 0.0164 (49/2995) 0 * * Os_TE_405904 Chr4 32995998 32995999 + SC-8_LTR 4951 0.0003 (1/2994) 0 * Os_TE_405903 Os_TE_405903 Chr4 32995994 32995993 - SC-8_LTR 4951 0.0003 (1/2995) 0 * Os_TE_405904 Os_TE_405901 Chr4 32993958 32993959 - RETROSAT2LTR 12796 0.0198 (59/2983) 0 * * Os_TE_405869 Chr4 32975279 32975280 - COPI2_LTR 4733 0.0004 (1/2842) 0 * Os_TE_405868 Os_TE_405868 Chr4 32975275 32975274 + COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_405869 Os_TE_405867 Chr4 32974688 32974687 - ORSgTEMT00100582 334 0.0594 (177/2982) 0 * * Os_TE_405853 Chr4 32967635 32971200 - ORSiTETNOOT00200 3563 0.1730 (510/2948) 1 Intact * Os_TE_405847 Chr4 32963201 32963200 + ORSgTEMT00700017 386 0.0033 (10/2994) 0 * * Os_TE_405844 Chr4 32962537 32962735 - ORSgTEMT02000041 194 0.1754 (517/2948) 1 Intact * Os_TE_405817 Chr4 32955287 32955288 - INDITTO 263 0.0030 (9/2982) 0 * Os_TE_405816 Os_TE_405816 Chr4 32955285 32955284 + INDITTO 263 0.0030 (9/2983) 0 * Os_TE_405817 Os_TE_405789 Chr4 32949420 32949421 - COPIA2-LTR_OS 6433 0.0003 (1/2903) 0 * Os_TE_405788 Os_TE_405788 Chr4 32949416 32949415 + COPIA2-LTR_OS 6433 0.0003 (1/2900) 0 * Os_TE_405789 Os_TE_405787 Chr4 32949016 32949017 - COPIA2-LTR_OS 6433 0.0003 (1/2899) 0 * Os_TE_405786 Os_TE_405786 Chr4 32949012 32949011 + COPIA2-LTR_OS 6433 0.0003 (1/2904) 0 * Os_TE_405787 Os_TE_405779 Chr4 32947430 32947431 - ORSiTEMT01000008 242 0.0128 (38/2969) 0 * Os_TE_405778 Os_TE_405778 Chr4 32947428 32947427 + ORSiTEMT01000008 242 0.0177 (51/2880) 0 * Os_TE_405779 Os_TE_405745 Chr4 32940593 32940369 - ORSgTEMT02400245 225 0.2947 (883/2996) 1 Intact Os_TE_405744 Os_TE_405744 Chr4 32940369 32940590 - ORSgTEMT02400246 177 0.2951 (883/2992) 1 Intact Os_TE_405745 Os_TE_405723 Chr4 32929990 32929991 - ORSgTEMT01601432 239 0.0445 (133/2987) 0 * * Os_TE_405633 Chr4 32856581 32856582 - ORSgTEMT01601432 239 0.0010 (3/2993) 0 * * Os_TE_405617 Chr4 32849481 32849480 - TYPEM 227 0.0323 (97/2999) 0 * Os_TE_405616 Os_TE_405616 Chr4 32849480 32849481 - ORSgTEMT02400246 177 0.0324 (97/2998) 0 * Os_TE_405617 Os_TE_405612 Chr4 32844010 32844011 + SC-8_LTR 4951 0.0003 (1/2996) 0 * Os_TE_405611 Os_TE_405611 Chr4 32844006 32844005 - SC-8_LTR 4951 0.0003 (1/2994) 0 * Os_TE_405612 Os_TE_405608 Chr4 32839334 32839333 + NDNA1TNA_OS 334 0.0446 (133/2984) 0 * Os_TE_405607 Os_TE_405607 Chr4 32839330 32839331 + ORSgTEMT00100531 325 0.0448 (134/2989) 0 * Os_TE_405608 Os_TE_405606 Chr4 32839149 32839148 - OSTE18 129 0.7113 (2129/2993) 0 * Os_TE_405605 Os_TE_405605 Chr4 32839143 32839144 + OSTE18 129 0.7118 (2126/2987) 0 * Os_TE_405606 Os_TE_405576 Chr4 32833674 32833675 - SZ-9LTR 965 0.0027 (8/2995) 0 * Os_TE_405575 Os_TE_405575 Chr4 32833670 32833669 + SZ-9LTR 965 0.0027 (8/2996) 0 * Os_TE_405576 Os_TE_405574 Chr4 32832277 32832278 + SZ-62LTR 3649 0.0030 (6/1993) 0 * * Os_TE_405566 Chr4 32827070 32827071 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * * Os_TE_405557 Chr4 32820184 32820185 - RIREX_LTR 8828 0.0010 (3/2978) 0 * Os_TE_405556 Os_TE_405556 Chr4 32820180 32820179 + RIREX_LTR 8828 0.0010 (3/2988) 0 * Os_TE_405557 Os_TE_405555 Chr4 32817634 32817635 + ORSiTERTOOT00332 5395 0.0023 (7/2986) 0 * Os_TE_405554 Os_TE_405554 Chr4 32817630 32817629 - ORSiTERTOOT00332 5395 0.0023 (7/2981) 0 * Os_TE_405555 Os_TE_405492 Chr4 32780288 32780289 - INDITTO 263 0.6928 (2059/2972) 0 * Os_TE_405491 Os_TE_405491 Chr4 32780286 32780285 - ORSgTETNOOT02417 265 0.6927 (2054/2965) 0 * Os_TE_405492 Os_TE_405472 Chr4 32772844 32772845 + ORSgTEMT01600726 235 0.0292 (86/2945) 0 * * Os_TE_405464 Chr4 32769184 32769185 + ORSiTERTOOT00296 5553 0.0003 (1/2994) 0 * Os_TE_405463 Os_TE_405463 Chr4 32769180 32769179 - SC-3_LTR 5748 0.0003 (1/2995) 0 * Os_TE_405464 Os_TE_405461 Chr4 32767607 32767608 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_405460 Os_TE_405460 Chr4 32767603 32767602 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_405461 Os_TE_405455 Chr4 32765568 32765569 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_405454 Os_TE_405454 Chr4 32765564 32765563 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_405455 Os_TE_405453 Chr4 32765263 32765264 + COPIA2-LTR_OS 6433 0.0037 (11/2998) 0 * Os_TE_405452 Os_TE_405452 Chr4 32765259 32765258 - COPIA2-LTR_OS 6433 0.0037 (11/2997) 0 * Os_TE_405453 Os_TE_405449 Chr4 32762821 32762822 + COPIA2-LTR_OS 6433 0.0003 (1/2917) 0 * Os_TE_405448 Os_TE_405448 Chr4 32762817 32762816 - COPIA2-LTR_OS 6433 0.0003 (1/2925) 0 * Os_TE_405449 Os_TE_405446 Chr4 32761571 32761572 - SC-3_LTR 5748 0.0003 (1/2993) 0 * Os_TE_405445 Os_TE_405445 Chr4 32761567 32761566 + ORSiTERTOOT00296 5553 0.0003 (1/2995) 0 * Os_TE_405446 Os_TE_405438 Chr4 32752482 32752483 + TWIFB1 3737 0.0007 (2/2976) 0 * * Os_TE_405430 Chr4 32751031 32751032 + TELIA 141 0.0014 (4/2798) 0 * * Os_TE_405429 Chr4 32751009 32751010 + TWIFBIG 3567 0.0047 (14/2957) 0 * Os_TE_405428 Os_TE_405428 Chr4 32751002 32751001 - ORSiTETNOOT00216 3569 0.0082 (23/2804) 0 * Os_TE_405429 Os_TE_405413 Chr4 32747969 32747970 + RETRO1_LTR 8314 0.0005 (1/1928) 0 * * Os_TE_405407 Chr4 32747413 32747414 - RIREX_LTR 8828 0.0027 (8/2979) 0 * Os_TE_405406 Os_TE_405406 Chr4 32747409 32747408 + RIREX_LTR 8828 0.0027 (8/2980) 0 * Os_TE_405407 Os_TE_405404 Chr4 32744465 32744466 + RETRO2_LTR 12874 0.6911 (2002/2897) 0 * Os_TE_405403 Os_TE_405403 Chr4 32744461 32744460 - RETRO2_LTR 12874 0.7003 (2084/2976) 0 * Os_TE_405404 Os_TE_405382 Chr4 32725860 32725861 + CASTAWAY 364 0.0017 (5/2911) 0 * Os_TE_405381 Os_TE_405381 Chr4 32725858 32725857 - CASTAWAY 364 0.0017 (5/2895) 0 * Os_TE_405382 Os_TE_405375 Chr4 32723527 32723528 + ORSgTETNOOT00032 218 0.0037 (11/2995) 0 * * Os_TE_405374 Chr4 32722946 32719014 - SZ-35LTR 3853 0.2477 (741/2992) 1 Intact Os_TE_405362 Os_TE_405362 Chr4 32708873 32722946 + RETROSAT4_LTR 13504 0.2483 (742/2988) 1 Intact Os_TE_405374 Os_TE_405303 Chr4 32688089 32688088 - RPO_OS 1983 0.6718 (2002/2980) 0 * Os_TE_405302 Os_TE_405302 Chr4 32688088 32688089 + RPO_OS 1983 0.6712 (2003/2984) 0 * Os_TE_405303 Os_TE_405299 Chr4 32681589 32681590 + MPING 430 0.0003 (1/2988) 0 * Os_TE_405298 Os_TE_405298 Chr4 32681587 32681586 - MPING 430 0.0003 (1/2995) 0 * Os_TE_405299 Os_TE_405297 Chr4 32681335 32681334 - STOWAWAY51_OS 246 0.0003 (1/2992) 0 * Os_TE_405296 Os_TE_405296 Chr4 32681329 32681330 + STOWAWAY51_OS 246 0.0003 (1/2993) 0 * Os_TE_405297 Os_TE_405279 Chr4 32671629 32671630 + CASBIG 811 0.0493 (147/2982) 0 * * Os_TE_405271 Chr4 32670854 32670855 - OSTE20 496 0.0593 (176/2969) 0 * Os_TE_405270 Os_TE_405270 Chr4 32670851 32670850 - OSTE20 496 0.0616 (183/2972) 0 * Os_TE_405271 Os_TE_405262 Chr4 32669428 32669429 + RETRO2_LTR 12874 0.0007 (2/2996) 0 * * Os_TE_405260 Chr4 32669216 32669217 + RETROSAT4_LTR 13504 0.0481 (144/2995) 0 * * Os_TE_405243 Chr4 32665988 32665989 - RETRO1_LTR 8314 0.0378 (113/2993) 0 * Os_TE_405242 Os_TE_405242 Chr4 32665984 32665983 + RETRO1_LTR 8314 0.0375 (112/2990) 0 * Os_TE_405243 Os_TE_405237 Chr4 32663066 32663065 - RETROSAT4_LTR 13504 0.0007 (2/2992) 0 * Os_TE_405236 Os_TE_405236 Chr4 32663013 32663014 - RETROSAT4_LTR 13504 0.0007 (2/2990) 0 * Os_TE_405237 Os_TE_405233 Chr4 32661279 32661278 + STOWAWAY51_OS 246 0.0003 (1/2997) 0 * * Os_TE_405230 Chr4 32659007 32659008 - STOWAWAY17_OS 259 0.0078 (23/2965) 0 * Os_TE_405229 Os_TE_405229 Chr4 32659006 32659005 + ORSgTETNOOT01225 240 0.0071 (21/2963) 0 * Os_TE_405230 Os_TE_405226 Chr4 32656710 32656711 - AMYLTP 383 0.0568 (170/2993) 0 * Os_TE_405225 Os_TE_405225 Chr4 32656702 32656701 + AMYLTP 383 0.0574 (172/2996) 0 * Os_TE_405226 Os_TE_405217 Chr4 32655519 32655518 - DNAUN1_OS 408 0.0514 (152/2958) 0 * * Os_TE_405185 Chr4 32631696 32631695 + RPO_OS 1983 0.4549 (1340/2946) 0 * * Os_TE_405182 Chr4 32630579 32630580 + SZ-48LTR 3632 0.0027 (8/2995) 0 * Os_TE_405181 Os_TE_405181 Chr4 32630575 32630574 - SZ-48LTR 3632 0.0027 (8/2991) 0 * Os_TE_405182 Os_TE_405161 Chr4 32623426 32623427 - MPING 430 0.0003 (1/2948) 0 * Os_TE_405160 Os_TE_405160 Chr4 32623424 32623423 + MPING 430 0.0003 (1/2955) 0 * Os_TE_405161 Os_TE_405158 Chr4 32621172 32621173 + RETROSAT4_LTR 13504 0.0014 (4/2937) 0 * Os_TE_405157 Os_TE_405157 Chr4 32621168 32621167 - RETROSAT4_LTR 13504 0.0017 (5/2949) 0 * Os_TE_405158 Os_TE_405149 Chr4 32605668 32605669 + MUDRN5_OS 374 0.0880 (142/1614) 0 * Os_TE_405148 Os_TE_405148 Chr4 32605667 32605666 - ORSgTEMT00700002 381 0.5314 (1584/2981) 0 * Os_TE_405149 Os_TE_405147 Chr4 32604923 32604924 - MPING 430 0.0003 (1/2967) 0 * Os_TE_405146 Os_TE_405146 Chr4 32604921 32604920 + MPING 430 0.0007 (1/1481) 0 * Os_TE_405147 Os_TE_405145 Chr4 32604533 32604534 + MPING 430 0.2368 (710/2998) 0 * Os_TE_405144 Os_TE_405144 Chr4 32604531 32604530 - MPING 430 0.3037 (714/2351) 0 * Os_TE_405145 Os_TE_405141 Chr4 32602386 32602385 - ORSgTEMT01601208 238 0.0003 (1/2976) 0 * * Os_TE_405139 Chr4 32600148 32600147 - ORSgTEMT02400246 177 0.0037 (5/1369) 0 * Os_TE_405138 Os_TE_405138 Chr4 32600147 32600148 - TYPEM 227 0.0011 (3/2713) 0 * Os_TE_405139 Os_TE_405136 Chr4 32599200 32599199 + COPI2_LTR 4733 0.0003 (1/2874) 0 * * Os_TE_405128 Chr4 32598119 32598425 - ORSgTEMT00101181 338 0.4835 (1300/2689) 1 Intact * Os_TE_405119 Chr4 32594228 32594229 - NDNA1TNA_OS 334 0.0485 (145/2990) 0 * * Os_TE_405105 Chr4 32586883 32586882 + ORSgTEMT00500201 140 0.0020 (6/2986) 0 * * Os_TE_405093 Chr4 32576199 32576200 + SC-8_LTR 4951 0.0003 (1/2986) 0 * Os_TE_405092 Os_TE_405092 Chr4 32576195 32576194 - SC-8_LTR 4951 0.0003 (1/2984) 0 * Os_TE_405093 Os_TE_405088 Chr4 32573332 32573333 - RETROSAT4_LTR 13504 0.0010 (3/2914) 0 * * Os_TE_405060 Chr4 32564348 32559066 - MuDR3_OS 8604 0.6681 (1928/2886) 1 Intact Os_TE_405056 Os_TE_405056 Chr4 32559063 32564348 - MuDR3_OS 8604 0.6807 (1976/2903) 1 Intact Os_TE_405060 Os_TE_405050 Chr4 32553071 32553072 - RIRE5-LTR_OS 6427 0.0490 (146/2978) 0 * Os_TE_405049 Os_TE_405049 Chr4 32553064 32553063 + RIRE5-LTR_OS 6427 0.0445 (132/2963) 0 * Os_TE_405050 Os_TE_405046 Chr4 32550878 32550879 + RIREX_LTR 8828 0.0038 (11/2930) 0 * Os_TE_405045 Os_TE_405045 Chr4 32550874 32550873 - RIREX_LTR 8828 0.0038 (11/2919) 0 * Os_TE_405046 Os_TE_405042 Chr4 32549824 32549825 + COPIA2-LTR_OS 6433 0.0217 (65/2989) 0 * Os_TE_405041 Os_TE_405041 Chr4 32549820 32549819 - COPIA2-LTR_OS 6433 0.0224 (67/2992) 0 * Os_TE_405042 Os_TE_405040 Chr4 32549780 32549781 + RIRE2_LTR 11306 0.0623 (186/2987) 0 * * Os_TE_405039 Chr4 32549502 32549503 - RIREX_LTR 8828 0.0137 (41/2995) 0 * Os_TE_405038 Os_TE_405038 Chr4 32549498 32549497 + RIREX_LTR 8828 0.0130 (39/2994) 0 * Os_TE_405039 Os_TE_405034 Chr4 32548348 32548347 + ORSgTEMT01400024 215 0.0004 (1/2629) -1 * * Os_TE_405023 Chr4 32545707 32545708 - SZ-40LTR 2465 0.0003 (1/2954) 0 * Os_TE_405022 Os_TE_405022 Chr4 32545703 32545702 + GYPSY-A_LTR 8951 0.0003 (1/2918) 0 * Os_TE_405023 Os_TE_404940 Chr4 32480272 32480273 + RIRE2_LTR 11306 0.0013 (4/2992) 0 * Os_TE_404939 Os_TE_404939 Chr4 32480268 32480267 - RIRE2_LTR 11306 0.0007 (2/2994) 0 * Os_TE_404940 Os_TE_404936 Chr4 32477960 32477959 + NDNA1TNA_OS 334 0.0053 (16/2994) 0 * * Os_TE_404935 Chr4 32477229 32477230 - ORSgTEMT00501447 126 0.0061 (18/2940) 0 * * Os_TE_404928 Chr4 32472468 32472469 + MuDR4_OS 7610 0.0007 (2/2940) 0 * Os_TE_404927 Os_TE_404927 Chr4 32472460 32472459 - MuDR4_OS 7610 0.0007 (2/2940) 0 * Os_TE_404928 Os_TE_404926 Chr4 32472266 32472265 - NDNA1TNA_OS 334 0.0130 (39/2992) 0 * Os_TE_404925 Os_TE_404925 Chr4 32472256 32472257 + NDNA1TNA_OS 334 0.0130 (39/2993) 0 * Os_TE_404926 Os_TE_404924 Chr4 32471515 32471516 - ORSiTEMT01000008 242 0.0074 (22/2984) 0 * * Os_TE_404918 Chr4 32470728 32466827 - RETROSAT4_LTR 13504 0.6850 (2042/2981) 1 Solo_LTR Os_TE_404914 Os_TE_404914 Chr4 32466827 32470728 + RETROSAT4_LTR 13504 0.6919 (2050/2963) 1 Solo_LTR Os_TE_404918 Os_TE_404912 Chr4 32466770 32466769 + RETROSAT4_LTR 13504 0.0014 (4/2914) 0 * * Os_TE_404911 Chr4 32466299 32466300 - COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_404910 Os_TE_404910 Chr4 32466295 32466294 + COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_404911 Os_TE_404909 Chr4 32466013 32466014 - RPO_OS 1983 0.4771 (1377/2886) 0 * * Os_TE_404905 Chr4 32464570 32464569 + ORSgTEMT00300093 396 0.1774 (517/2915) 0 * * Os_TE_404895 Chr4 32463198 32463199 - SINE16_OS 116 0.2803 (837/2986) 0 * * Os_TE_404893 Chr4 32462420 32462421 - INDITTO 263 0.0017 (5/2987) 0 * Os_TE_404892 Os_TE_404892 Chr4 32462418 32462417 + INDITTO 263 0.0017 (5/2984) 0 * Os_TE_404893 Os_TE_404886 Chr4 32457585 32457586 + RIRE2_LTR 11306 0.5092 (1522/2989) 0 * Os_TE_404885 Os_TE_404885 Chr4 32457581 32457580 - RIRE2_LTR 11306 0.5092 (1523/2991) 0 * Os_TE_404886 Os_TE_404883 Chr4 32456870 32456871 - RIREX_LTR 8828 0.0007 (2/2997) 0 * Os_TE_404882 Os_TE_404882 Chr4 32456866 32456865 + RIREX_LTR 8828 0.0007 (2/2998) 0 * Os_TE_404883 Os_TE_404876 Chr4 32454616 32454615 - LINE-4_OS 3662 0.0017 (5/2995) 0 * * Os_TE_404870 Chr4 32452910 32452911 + ORSgTERTOOT00009 12852 0.0142 (40/2821) 0 * Os_TE_404869 Os_TE_404869 Chr4 32452906 32452905 - RETRO2_LTR 12874 0.0142 (40/2824) 0 * Os_TE_404870 Os_TE_404866 Chr4 32452396 32452395 - TNR2A 152 0.1865 (550/2949) 0 * * Os_TE_404865 Chr4 32452081 32452080 - STOWAWAY51_OS 246 0.0003 (1/2978) 0 * Os_TE_404864 Os_TE_404864 Chr4 32452075 32452076 + STOWAWAY51_OS 246 0.0003 (1/2980) 0 * Os_TE_404865 Os_TE_404863 Chr4 32452017 32452018 - COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_404862 Os_TE_404862 Chr4 32452013 32452012 + COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_404863 Os_TE_404861 Chr4 32451939 32451940 - NDNA1TNA_OS 334 0.0007 (2/2992) 0 * Os_TE_404860 Os_TE_404860 Chr4 32451938 32451937 + NDNA1TNA_OS 334 0.0007 (2/2994) 0 * Os_TE_404861 Os_TE_404855 Chr4 32449594 32449595 + COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_404854 Os_TE_404854 Chr4 32449590 32449589 - COPI2_LTR 4733 0.0003 (1/2993) 0 * Os_TE_404855 Os_TE_404838 Chr4 32446368 32446369 + RETROSAT4_LTR 13504 0.0653 (191/2925) 0 * * Os_TE_404835 Chr4 32445031 32445030 + RETRO2A_LTR 12895 0.0007 (2/2723) 0 * * Os_TE_404811 Chr4 32416511 32416512 - MPING 430 0.0003 (1/2989) 0 * Os_TE_404810 Os_TE_404810 Chr4 32416509 32416508 + MPING 430 0.0003 (1/2990) 0 * Os_TE_404811 Os_TE_404809 Chr4 32415120 32414993 + SINE1OS 127 0.4175 (1250/2994) 1 Intact * Os_TE_404794 Chr4 32408161 32408162 - ORSgTEMT02400179 221 0.0258 (77/2990) 0 * Os_TE_404793 Os_TE_404793 Chr4 32408160 32408159 - TYPEM 227 0.0255 (76/2984) 0 * Os_TE_404794 Os_TE_404791 Chr4 32406354 32406355 - TELIA 141 0.0003 (1/2990) 0 * Os_TE_404790 Os_TE_404790 Chr4 32406346 32406345 + TELIA 141 0.0003 (1/2990) 0 * Os_TE_404791 Os_TE_404788 Chr4 32405170 32405171 - RPO_OS 1983 0.0003 (1/2991) 0 * * Os_TE_404781 Chr4 32399616 32399617 + OSTE33 1012 0.0220 (66/2995) 0 * Os_TE_404780 Os_TE_404780 Chr4 32399607 32399606 + OSTE33 1012 0.0224 (67/2990) 0 * Os_TE_404781 Os_TE_404779 Chr4 32399548 32394374 - CPSC3_LTR 5175 0.2473 (740/2992) 1 Intact Os_TE_404776 Os_TE_404776 Chr4 32394374 32399548 + CPSC3_LTR 5175 0.2476 (740/2989) 1 Intact Os_TE_404779 Os_TE_404753 Chr4 32378377 32378376 + ORSgTEMT01601591 242 0.0003 (1/2982) 0 * * Os_TE_404752 Chr4 32378373 32378374 + TWIF 586 0.0012 (3/2530) 0 * Os_TE_404751 Os_TE_404751 Chr4 32378366 32378365 - ORSiTETNOOT00134 607 0.0010 (3/2978) 0 * Os_TE_404752 Os_TE_404750 Chr4 32374985 32374986 + ORSiTERTOOT00296 5553 0.0007 (2/2997) 0 * Os_TE_404749 Os_TE_404749 Chr4 32374981 32374980 - SC-3_LTR 5748 0.0007 (2/2995) 0 * Os_TE_404750 Os_TE_404748 Chr4 32374017 32374018 - SC-8_LTR 4951 0.0003 (1/2968) 0 * Os_TE_404747 Os_TE_404747 Chr4 32374013 32374012 + SC-8_LTR 4951 0.0003 (1/2971) 0 * Os_TE_404748 Os_TE_404731 Chr4 32368429 32368645 - Cassandra_OS-LTR 764 0.4057 (1201/2960) 1 Intact * Os_TE_404728 Chr4 32364058 32364057 + ORSgTEMT05000092 279 0.0017 (5/2998) 0 * * Os_TE_404719 Chr4 32357946 32357945 - ORSgTEMT00700002 381 0.0007 (2/2965) 0 * * Os_TE_404717 Chr4 32353052 32353053 - SZ-66LTR 1223 0.0003 (1/2887) 0 * * Os_TE_404715 Chr4 32352402 32352403 + RETRO2_LTR 12874 0.0013 (4/2978) 0 * Os_TE_404714 Os_TE_404714 Chr4 32352398 32352397 - RETRO2_LTR 12874 0.0013 (4/2982) 0 * Os_TE_404715 Os_TE_404692 Chr4 32335666 32335667 + MDR2 6967 0.0817 (242/2963) 0 * Os_TE_404691 Os_TE_404691 Chr4 32335658 32335657 - MDR2 6967 0.0791 (234/2958) 0 * Os_TE_404692 Os_TE_404685 Chr4 32333011 32333012 - NDNA1TNA_OS 334 0.0294 (88/2994) 0 * Os_TE_404684 Os_TE_404684 Chr4 32333009 32333008 + NDNA1TNA_OS 334 0.0290 (87/2998) 0 * Os_TE_404685 Os_TE_404683 Chr4 32332690 32332452 - ORSgTEMT01601432 239 0.0793 (237/2989) 1 Intact * Os_TE_404681 Chr4 32332314 32332313 - ORSgTEMT02400246 177 0.0017 (5/2974) 0 * * Os_TE_404680 Chr4 32332244 32332245 - INDITTO 263 0.0007 (2/2993) 0 * * Os_TE_404662 Chr4 32328160 32328159 + ORSgTEMT01601591 242 0.2434 (669/2749) 0 * Os_TE_404661 Os_TE_404661 Chr4 32328157 32328158 + ORSgTEMT01601591 242 0.2851 (850/2981) 0 * Os_TE_404662 Os_TE_404660 Chr4 32327260 32327261 - MuDR4_OS 7610 0.0218 (59/2709) 0 * Os_TE_404659 Os_TE_404659 Chr4 32327254 32327253 - MuDR4_OS 7610 0.0146 (42/2868) 0 * Os_TE_404660 Os_TE_404656 Chr4 32327226 32327225 - ORSgTETNOOT00053 263 0.0037 (7/1896) 0 * * Os_TE_404642 Chr4 32304166 32311474 - OSTONOR1_LTR 6440 0.1718 (514/2992) 1 Intact * Os_TE_404639 Chr4 32303823 32303824 - MPING 430 0.0060 (18/2991) 0 * Os_TE_404638 Os_TE_404638 Chr4 32303821 32303820 + MPING 430 0.0067 (20/2991) 0 * Os_TE_404639 Os_TE_404624 Chr4 32297114 32297115 + RIREX_LTR 8828 0.0007 (2/2994) 0 * Os_TE_404623 Os_TE_404623 Chr4 32297110 32297109 - RIREX_LTR 8828 0.0007 (2/2997) 0 * Os_TE_404624 Os_TE_404617 Chr4 32294724 32294723 + INDITTO 263 0.0017 (5/2980) 0 * * Os_TE_404601 Chr4 32286752 32286753 - ORSgTEMT00502442 148 0.0050 (15/2985) 0 * Os_TE_404600 Os_TE_404600 Chr4 32286751 32286750 - ORSgTEMT00502287 149 0.0050 (15/2986) 0 * Os_TE_404601 Os_TE_404599 Chr4 32286661 32286660 - TNR2A 152 0.0265 (79/2985) 0 * * Os_TE_404595 Chr4 32283582 32283581 + ORSgTETNOOT00908 242 0.2972 (887/2985) 0 * * Os_TE_404593 Chr4 32283415 32283416 - ORSiTERT00100079 4922 0.0011 (3/2831) 0 * Os_TE_404592 Os_TE_404592 Chr4 32283411 32283410 + ORSiTERT00100079 4922 0.0010 (3/2965) 0 * Os_TE_404593 Os_TE_404590 Chr4 32283385 32283386 + MERMITEB 1610 0.0039 (11/2842) 0 * * Os_TE_404571 Chr4 32273690 32273691 + COPIA2-LTR_OS 6433 0.0010 (3/2998) 0 * Os_TE_404570 Os_TE_404570 Chr4 32273686 32273685 - COPIA2-LTR_OS 6433 0.0013 (4/2999) 0 * Os_TE_404571 Os_TE_404525 Chr4 32258692 32258693 + DS-RICE4N 715 0.0639 (191/2990) 0 * Os_TE_404524 Os_TE_404524 Chr4 32258685 32258684 - DS-RICE2N 613 0.0648 (194/2995) 0 * Os_TE_404525 Os_TE_404521 Chr4 32258311 32258312 + MUJITOS1 3987 0.0271 (81/2991) 0 * * Os_TE_404517 Chr4 32256545 32256544 - CLOUD 734 0.0003 (1/2962) 0 * * Os_TE_404508 Chr4 32251498 32251499 + EnSpm-16_OS 13336 0.1068 (318/2978) 0 * Os_TE_404507 Os_TE_404507 Chr4 32251494 32251493 - EnSpm-16_OS 13336 0.1069 (318/2975) 0 * Os_TE_404508 Os_TE_404495 Chr4 32250437 32250438 - NDNA1TNA_OS 334 0.0010 (3/2991) 0 * Os_TE_404494 Os_TE_404494 Chr4 32250435 32250434 + NDNA1TNA_OS 334 0.0010 (3/2991) 0 * Os_TE_404495 Os_TE_404493 Chr4 32250422 32250423 + SZ-55_LTR 10318 0.0003 (1/2992) 0 * * Os_TE_404487 Chr4 32247638 32247639 + RIREX_LTR 8828 0.0460 (138/2999) 0 * * Os_TE_404479 Chr4 32246448 32246447 - Cassandra_OS-LTR 764 0.0285 (85/2985) 0 * * Os_TE_404477 Chr4 32244889 32244890 - RIREX_LTR 8828 0.0003 (1/2987) 0 * * Os_TE_404456 Chr4 32240171 32240172 + ORSiCMCM00100019 2717 0.3321 (995/2996) 0 * Os_TE_404455 Os_TE_404455 Chr4 32240167 32240166 - TRUNCATOR2_LTR 2904 0.3339 (1000/2995) 0 * Os_TE_404456 Os_TE_404454 Chr4 32238932 32238933 - RIRE2_LTR 11306 0.1849 (553/2991) 0 * Os_TE_404453 Os_TE_404453 Chr4 32238928 32238927 - ORSgTERT00201216 11284 0.1875 (562/2997) 0 * Os_TE_404454 Os_TE_404452 Chr4 32238873 32238874 - RIREX_LTR 8828 0.0003 (1/2992) 0 * Os_TE_404451 Os_TE_404451 Chr4 32238869 32238868 + RIREX_LTR 8828 0.0003 (1/2995) 0 * Os_TE_404452 Os_TE_404449 Chr4 32238176 32238177 - COPI2_LTR 4733 0.0003 (1/2928) 0 * Os_TE_404448 Os_TE_404448 Chr4 32238172 32238171 + COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_404449 Os_TE_404447 Chr4 32238155 32238156 - ORSgTETN00200001 10994 0.0224 (67/2986) 0 * Os_TE_404446 Os_TE_404446 Chr4 32238153 32238152 + SPMLIKE 10989 0.0257 (77/2991) 0 * Os_TE_404447 Os_TE_404445 Chr4 32238147 32238146 - ENSPM4_OS 11610 0.0014 (4/2928) 0 * * Os_TE_404431 Chr4 32233064 32233065 + CRM-LTR_OS 7749 0.0003 (1/2969) 0 * Os_TE_404430 Os_TE_404430 Chr4 32233060 32233059 - CRM-LTR_OS 7749 0.0004 (1/2427) 0 * Os_TE_404431 Os_TE_404423 Chr4 32227808 32227809 - RIREX_LTR 8828 0.2289 (685/2993) 0 * * Os_TE_404420 Chr4 32227785 32227784 + RIREX_LTR 8828 0.0007 (2/2914) 0 * * Os_TE_404419 Chr4 32227474 32227475 - RIRE2_LTR 11306 0.0007 (2/2996) 0 * Os_TE_404418 Os_TE_404418 Chr4 32227470 32227469 + RIRE2_LTR 11306 0.0007 (2/2995) 0 * Os_TE_404419 Os_TE_404405 Chr4 32225365 32225366 + RETROSAT4_LTR 13504 0.3289 (965/2934) 0 * Os_TE_404404 Os_TE_404404 Chr4 32225361 32225360 - RETROSAT4_LTR 13504 0.3489 (1043/2989) 0 * Os_TE_404405 Os_TE_404401 Chr4 32224233 32224234 - RIRE2_LTR 11306 0.1229 (366/2978) 0 * * Os_TE_404386 Chr4 32213745 32213746 + RETROSAT4_LTR 13504 0.1288 (382/2966) 0 * Os_TE_404385 Os_TE_404385 Chr4 32213741 32213740 - Cassandra_OS-LTR 764 0.1304 (387/2968) 0 * Os_TE_404386 Os_TE_404357 Chr4 32202805 32202806 - LINE-4_OS 3662 0.0274 (82/2995) 0 * * Os_TE_404353 Chr4 32200715 32200714 - RIREX_LTR 8828 0.0007 (2/2882) 0 * * Os_TE_404352 Chr4 32199090 32199091 - ORSiTERTOOT00402 2660 0.0013 (4/2985) 0 * Os_TE_404351 Os_TE_404351 Chr4 32199086 32199085 + ORSiTERTOOT00402 2660 0.0013 (4/2983) 0 * Os_TE_404352 Os_TE_404341 Chr4 32188535 32187345 + RMU2A1C 1169 0.8582 (2561/2984) 1 Intact Os_TE_404339 Os_TE_404339 Chr4 32187345 32188535 + RMU2A1C 1169 0.8944 (2583/2888) 1 Intact Os_TE_404341 Os_TE_404336 Chr4 32187173 32187172 + DS-RICE4N 715 0.1820 (540/2967) 0 * * Os_TE_404335 Chr4 32186796 32186797 - RIREX_LTR 8828 0.0921 (276/2998) 0 * Os_TE_404334 Os_TE_404334 Chr4 32186792 32186791 + RIREX_LTR 8828 0.0856 (255/2979) 0 * Os_TE_404335 Os_TE_404330 Chr4 32183229 32183230 + MuDR2_OS 6770 0.0034 (10/2910) 0 * Os_TE_404329 Os_TE_404329 Chr4 32183220 32183219 - MuDR2_OS 6770 0.0031 (9/2912) 0 * Os_TE_404330 Os_TE_404327 Chr4 32182358 32182359 - RIREX_LTR 8828 0.0074 (22/2979) 0 * Os_TE_404326 Os_TE_404326 Chr4 32182354 32182353 + RIREX_LTR 8828 0.0074 (22/2978) 0 * Os_TE_404327 Os_TE_404324 Chr4 32182126 32182125 - RIREX_LTR 8828 0.0013 (4/2990) 0 * * Os_TE_404323 Chr4 32181448 32181449 - ORSgTEMT01702255 155 0.0100 (30/2989) 0 * * Os_TE_404320 Chr4 32178645 32178646 - F569 228 0.0007 (2/2995) 0 * Os_TE_404319 Os_TE_404319 Chr4 32178643 32178642 + F569 228 0.0007 (2/2994) 0 * Os_TE_404320 Os_TE_404310 Chr4 32173131 32173132 - STOWAWAY1_OS 149 0.6971 (2037/2922) 0 * Os_TE_404308 Os_TE_404308 Chr4 32173116 32173115 + ORSiTEMT00300001 383 0.0745 (76/1020) 0 * Os_TE_404310 Os_TE_404303 Chr4 32170809 32170808 - STOWAWAY48_OS 261 0.6503 (1819/2797) 0 * Os_TE_404302 Os_TE_404302 Chr4 32170806 32170807 + STOWAWAY48_OS 261 0.0029 (3/1031) 0 * Os_TE_404303 Os_TE_404300 Chr4 32170530 32170149 + AMYLTP 383 0.2928 (867/2961) 1 Intact Os_TE_404297 Os_TE_404297 Chr4 32170149 32170530 - AMYLTP 383 0.2869 (845/2945) 1 Intact Os_TE_404300 Os_TE_404296 Chr4 32169911 32169912 - COWARD-3 221 0.6711 (1977/2946) 0 * * Os_TE_404292 Chr4 32166386 32166387 - INDITTO 263 0.0035 (8/2308) 0 * Os_TE_404291 Os_TE_404291 Chr4 32166384 32166383 + INDITTO 263 0.0044 (13/2972) 0 * Os_TE_404292 Os_TE_404290 Chr4 32166363 32162776 + TWIFBIG 3567 0.1980 (586/2960) 1 Intact Os_TE_404289 Os_TE_404289 Chr4 32162775 32166363 - ORSiTETNOOT00200 3563 0.1796 (524/2918) 1 Intact Os_TE_404290 Os_TE_404278 Chr4 32158923 32158924 - RETROSAT4_LTR 13504 0.0067 (20/2992) 0 * Os_TE_404277 Os_TE_404277 Chr4 32158919 32158918 + RETROSAT4_LTR 13504 0.0060 (18/2990) 0 * Os_TE_404278 Os_TE_404275 Chr4 32156729 32156730 + MPING 430 0.0020 (6/2999) 0 * Os_TE_404274 Os_TE_404274 Chr4 32156727 32156726 - MPING 430 0.0020 (6/2997) 0 * Os_TE_404275 Os_TE_404273 Chr4 32155685 32155686 - ORSiTETN00200006 8216 0.0003 (1/2999) 0 * Os_TE_404272 Os_TE_404272 Chr4 32155683 32155682 + ORSiTETN00200006 8216 0.0003 (1/2999) 0 * Os_TE_404273 Os_TE_404259 Chr4 32147983 32147984 + MDR2 6967 0.0007 (2/2991) 0 * Os_TE_404258 Os_TE_404258 Chr4 32147975 32147974 - MDR2 6967 0.0007 (2/2991) 0 * Os_TE_404259 Os_TE_404252 Chr4 32145077 32145424 + OLO24 345 0.2807 (839/2989) 1 Intact * Os_TE_404251 Chr4 32144482 32144483 + INDITTO 263 0.2757 (825/2992) 0 * Os_TE_404250 Os_TE_404250 Chr4 32144480 32144479 - INDITTO 263 0.2752 (824/2994) 0 * Os_TE_404251 Os_TE_404248 Chr4 32144032 32144033 - ORSgTETNOOT02565 240 0.0834 (239/2866) 0 * Os_TE_404247 Os_TE_404247 Chr4 32144029 32144028 + ORSgTETNOOT00012 241 0.0797 (238/2985) 0 * Os_TE_404248 Os_TE_404244 Chr4 32143616 32143617 - MPING 430 0.0003 (1/2976) 0 * Os_TE_404243 Os_TE_404243 Chr4 32143614 32143613 + MPING 430 0.0007 (2/2857) 0 * Os_TE_404244 Os_TE_404229 Chr4 32141929 32141930 - ORSgTEMT00501035 149 0.0434 (130/2998) 0 * Os_TE_404228 Os_TE_404228 Chr4 32141928 32141927 + GAIJIN 147 0.0437 (131/3000) 0 * Os_TE_404229 Os_TE_404227 Chr4 32141885 32141886 - ORSgTEMT00100582 334 0.0354 (106/2998) 0 * Os_TE_404226 Os_TE_404226 Chr4 32141884 32141883 + NDNA1TNA_OS 334 0.0330 (99/2996) 0 * Os_TE_404227 Os_TE_404225 Chr4 32141750 32141751 - F770 284 0.0023 (7/2996) 0 * Os_TE_404224 Os_TE_404224 Chr4 32141748 32141747 + F770 284 0.0023 (7/2997) 0 * Os_TE_404225 Os_TE_404204 Chr4 32135080 32135081 + DS-RICE4N 715 0.0003 (1/2956) 0 * * Os_TE_404194 Chr4 32132302 32132169 + ORSgTEMT00502437 145 0.8975 (2637/2938) 1 Intact * Os_TE_404146 Chr4 32092431 32092432 + STOWAWAY9_OS 235 0.0014 (4/2934) 0 * * Os_TE_404144 Chr4 32091804 32091805 + COPI2_LTR 4733 0.1507 (450/2986) 0 * * Os_TE_404129 Chr4 32090232 32090233 + ORSiTERTOOT00034 791 0.2154 (639/2967) 0 * * Os_TE_404121 Chr4 32088803 32088802 + RETRO1_LTR 8314 0.0064 (19/2973) 0 * * Os_TE_404119 Chr4 32088708 32088707 + RETRO2_LTR 12874 0.2534 (614/2423) 0 * * Os_TE_404110 Chr4 32084794 32084795 + MuDR3_OS 8604 0.0634 (153/2414) 0 * Os_TE_404109 Os_TE_404109 Chr4 32084786 32084785 - MuDR3_OS 8604 0.0959 (239/2492) 0 * Os_TE_404110 Os_TE_404107 Chr4 32084765 32084764 + SZ-40LTR 2465 0.0008 (2/2371) 0 * * Os_TE_404098 Chr4 32082603 32082602 - TYPEM 227 0.0008 (2/2480) 0 * * Os_TE_404093 Chr4 32081058 32081059 + ORSgTEMT01601122 212 0.0069 (17/2472) 0 * * Os_TE_404090 Chr4 32081014 32081013 + RETRO2_LTR 12874 0.0195 (48/2457) 0 * * Os_TE_404067 Chr4 32077726 32077727 + ORSgTEMT00100531 325 0.2816 (706/2507) 0 * * Os_TE_404063 Chr4 32077524 32075185 + MERMITEB 1610 0.8426 (2494/2960) 1 Intact * Os_TE_404032 Chr4 32062762 32062912 - ORSgTEMT00502293 151 0.8223 (2374/2887) 1 Intact * Os_TE_404027 Chr4 32059863 32059864 - COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_404026 Os_TE_404026 Chr4 32059859 32059858 + COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_404027 Os_TE_404025 Chr4 32059463 32059464 - ORSgTEMT02400179 221 0.0067 (20/2985) 0 * Os_TE_404024 Os_TE_404024 Chr4 32059462 32059461 - TYPEM 227 0.0070 (21/2991) 0 * Os_TE_404025 Os_TE_404023 Chr4 32059423 32059422 - AMYLTP 383 0.0024 (7/2960) 0 * * Os_TE_404018 Chr4 32059082 32059083 + RETROSAT4_LTR 13504 0.0003 (1/2889) 0 * * Os_TE_404016 Chr4 32059057 32059058 + RETRO1_LTR 8314 0.0025 (7/2785) 0 * Os_TE_404015 Os_TE_404015 Chr4 32059053 32059052 - RETRO1_LTR 8314 0.0063 (18/2880) 0 * Os_TE_404016 Os_TE_404012 Chr4 32058990 32058991 + RETROSAT4_LTR 13504 0.2076 (366/1763) 0 * * Os_TE_404002 Chr4 32058527 32058526 - NDNA1TNA_OS 334 0.0018 (5/2805) 0 * * Os_TE_404000 Chr4 32058493 32058492 - COPI2_LTR 4733 0.0317 (87/2743) 0 * * Os_TE_403998 Chr4 32058352 32058353 + NDNA1TNA_OS 334 0.0018 (5/2766) 0 * * Os_TE_403997 Chr4 32058317 32058318 + ORSgTETNOOT00032 218 0.0067 (20/2964) 0 * * Os_TE_403995 Chr4 32058123 32051684 + OSTONOR1_LTR 6440 0.1830 (514/2808) 1 Intact Os_TE_403994 Os_TE_403994 Chr4 32051684 32058123 - OSTONOR1_LTR 6440 0.1692 (497/2938) 1 Intact Os_TE_403995 Os_TE_403992 Chr4 32050769 32050770 - RPO_OS 1983 0.0092 (27/2946) 0 * * Os_TE_403991 Chr4 32050624 32050625 + ORSgTETNOOT01834 251 0.0008 (2/2537) 0 * Os_TE_403990 Os_TE_403990 Chr4 32050622 32050621 - ORSgTETNOOT00754 253 0.0007 (2/2948) 0 * Os_TE_403991 Os_TE_403966 Chr4 32041608 32041609 - MuDR3_OS 8604 0.0007 (2/2961) 0 * Os_TE_403965 Os_TE_403965 Chr4 32041599 32041598 - MuDR3_OS 8604 0.0007 (2/2966) 0 * Os_TE_403966 Os_TE_403964 Chr4 32041336 32041337 + F569 228 0.0033 (10/2988) 0 * Os_TE_403963 Os_TE_403963 Chr4 32041334 32041333 - F569 228 0.0037 (11/2979) 0 * Os_TE_403964 Os_TE_403960 Chr4 32040612 32040613 + COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_403959 Os_TE_403959 Chr4 32040608 32040607 - COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_403960 Os_TE_403954 Chr4 32039581 32039582 + HARB-1_OS 5166 0.0003 (1/2942) 0 * Os_TE_403953 Os_TE_403953 Chr4 32039579 32039578 - HARB-1_OS 5166 0.0003 (1/2937) 0 * Os_TE_403954 Os_TE_403949 Chr4 32036890 32036891 + ORSiTERTOOT00296 5553 0.0003 (1/2987) 0 * Os_TE_403948 Os_TE_403948 Chr4 32036886 32036885 - SC-3_LTR 5748 0.0003 (1/2989) 0 * Os_TE_403949 Os_TE_403941 Chr4 32025572 32032015 + OSTONOR1_LTR 6440 0.4226 (944/2234) 1 Intact * Os_TE_403938 Chr4 32023931 32023932 + NDNA1TNA_OS 334 0.0009 (2/2320) 0 * Os_TE_403937 Os_TE_403937 Chr4 32023929 32023928 - NDNA1TNA_OS 334 0.0009 (2/2321) 0 * Os_TE_403938 Os_TE_403935 Chr4 32022880 32022879 - ORSgTETNOOT00870 199 0.0177 (40/2261) 0 * * Os_TE_403931 Chr4 32021953 32021954 - COPIA2-LTR_OS 6433 0.0003 (1/2950) 0 * * Os_TE_403928 Chr4 32019921 32019922 + ORSiTERTOOT00296 5553 0.0003 (1/2997) 0 * Os_TE_403927 Os_TE_403927 Chr4 32019917 32019916 - SC-3_LTR 5748 0.0003 (1/2995) 0 * Os_TE_403928 Os_TE_403916 Chr4 32011982 32011983 - ORSiTERTOOT00333 4719 0.0003 (1/2975) 0 * Os_TE_403915 Os_TE_403915 Chr4 32011979 32011978 + ORSiTERTOOT00333 4719 0.0003 (1/2973) 0 * Os_TE_403916 Os_TE_403907 Chr4 32001720 32001719 + ORSgTETNOOT00908 242 0.0494 (146/2954) 0 * * Os_TE_403897 Chr4 31998504 31998505 - RIREX_LTR 8828 0.0035 (6/1704) 0 * * Os_TE_403895 Chr4 31997769 31997770 + MDR2 6967 0.0007 (2/2720) 0 * * Os_TE_403893 Chr4 31997431 31997430 - TYPEM 227 0.0094 (28/2971) 0 * Os_TE_403892 Os_TE_403892 Chr4 31997430 31997431 + ORSgTEMT02400206 225 0.0091 (27/2951) 0 * Os_TE_403893 Os_TE_403891 Chr4 31997422 31997423 + MPING 430 0.0051 (15/2963) 0 * Os_TE_403890 Os_TE_403890 Chr4 31997420 31997419 - MPING 430 0.0058 (17/2936) 0 * Os_TE_403891 Os_TE_403886 Chr4 31996033 31996034 + ORSgTETNOOT00032 218 0.2028 (600/2959) 0 * * Os_TE_403884 Chr4 31993613 31993614 - RIREX_LTR 8828 0.0013 (4/2986) 0 * Os_TE_403883 Os_TE_403883 Chr4 31993609 31993608 + RIREX_LTR 8828 0.0013 (4/2985) 0 * Os_TE_403884 Os_TE_403854 Chr4 31975548 31975549 + MDR2 6967 0.0007 (2/2825) 0 * Os_TE_403853 Os_TE_403853 Chr4 31975540 31975539 - MDR2 6967 0.0007 (2/2868) 0 * Os_TE_403854 Os_TE_403852 Chr4 31974342 31975416 + RPO_OS 1983 0.4404 (1272/2888) 1 Intact * Os_TE_403850 Chr4 31973349 31973348 - NDNA1TNA_OS 334 0.0007 (2/2986) 0 * * Os_TE_403839 Chr4 31959691 31959692 - ORSiTETNOOT00200 3563 0.0057 (17/2974) 0 * * Os_TE_403832 Chr4 31958941 31958942 + MDR2 6967 0.0244 (70/2870) 0 * Os_TE_403831 Os_TE_403831 Chr4 31958932 31958931 - MDR2 6967 0.0177 (51/2881) 0 * Os_TE_403832 Os_TE_403828 Chr4 31957195 31957196 + RIRE2_LTR 11306 0.0071 (21/2971) 0 * Os_TE_403827 Os_TE_403827 Chr4 31957191 31957190 - RIRE2_LTR 11306 0.0070 (21/2997) 0 * Os_TE_403828 Os_TE_403826 Chr4 31956765 31956766 - COPIA2-LTR_OS 6433 0.0010 (3/2957) 0 * Os_TE_403825 Os_TE_403825 Chr4 31956761 31956760 + COPIA2-LTR_OS 6433 0.0010 (3/2955) 0 * Os_TE_403826 Os_TE_403823 Chr4 31956217 31956218 + Hopscotch_LTR 4876 0.0074 (22/2967) 0 * Os_TE_403822 Os_TE_403822 Chr4 31956213 31956212 - Hopscotch_LTR 4876 0.0077 (23/2969) 0 * Os_TE_403823 Os_TE_403821 Chr4 31955886 31941892 - RETROSAT4_LTR 13504 0.4146 (1226/2957) 1 Intact * Os_TE_403811 Chr4 31941546 31941545 + OSTE33 1012 0.0041 (12/2940) 0 * * Os_TE_403809 Chr4 31940454 31940453 + RETRO1_LTR 8314 0.0433 (128/2959) 0 * * Os_TE_403796 Chr4 31938176 31938175 - ORSiTEMT01300001 950 0.0077 (23/2997) 0 * * Os_TE_403785 Chr4 31935402 31935403 - RETROSAT4_LTR 13504 0.0175 (52/2968) 0 * * Os_TE_403779 Chr4 31932307 31932308 + F770 284 0.0098 (23/2357) 0 * * Os_TE_403774 Chr4 31931899 31931900 - INDITTO 263 0.0202 (60/2973) 0 * * Os_TE_403769 Chr4 31931328 31931329 + SZ-55_LTR 10318 0.0027 (8/2998) 0 * Os_TE_403768 Os_TE_403768 Chr4 31931324 31931323 - SZ-55_LTR 10318 0.0027 (8/2978) 0 * Os_TE_403769 Os_TE_403763 Chr4 31930940 31930939 + STOWAWAY45_OS 266 0.0003 (1/2994) 0 * Os_TE_403762 Os_TE_403762 Chr4 31930937 31930938 - STOWAWAY45_OS 266 0.0003 (1/2986) 0 * Os_TE_403763 Os_TE_403761 Chr4 31930906 31930907 - HARB-1_OS 5166 0.0280 (84/2995) 0 * Os_TE_403760 Os_TE_403760 Chr4 31930904 31930903 + HARB-1_OS 5166 0.0287 (86/2994) 0 * Os_TE_403761 Os_TE_403751 Chr4 31929976 31929975 - STOWAWAY51_OS 246 0.0007 (2/2945) 0 * Os_TE_403750 Os_TE_403750 Chr4 31929973 31929974 - STOWAWAY51_OS 246 0.0007 (2/2947) 0 * Os_TE_403751 Os_TE_403744 Chr4 31925732 31925733 + RETRO2_LTR 12874 0.0010 (3/2994) 0 * Os_TE_403743 Os_TE_403743 Chr4 31925728 31925727 - RETRO1_LTR 8314 0.0010 (3/2993) 0 * Os_TE_403744 Os_TE_403738 Chr4 31922686 31922687 + ORSiTERTOOT00311 8241 0.0207 (62/2989) 0 * Os_TE_403737 Os_TE_403737 Chr4 31922676 31922675 - ORSiTERTOOT00311 8241 0.0204 (61/2991) 0 * Os_TE_403738 Os_TE_403723 Chr4 31919837 31919838 + ORSgTETNOOT01668 244 0.0201 (59/2930) 0 * * Os_TE_403712 Chr4 31917745 31917744 + TRUNCATOR 2918 0.0007 (2/2968) 0 * * Os_TE_403711 Chr4 31917098 31917099 - HARB-1_OS 5166 0.0080 (24/2988) 0 * Os_TE_403710 Os_TE_403710 Chr4 31917096 31917095 + HARB-1_OS 5166 0.0070 (21/2992) 0 * Os_TE_403711 Os_TE_403709 Chr4 31917065 31917064 + TESS 244 0.0040 (12/2993) 0 * * Os_TE_403708 Chr4 31917047 31917048 + TYPEU4 402 0.0218 (65/2984) 0 * * Os_TE_403706 Chr4 31916139 31916140 + COPI2_LTR 4733 0.0209 (45/2149) 0 * Os_TE_403705 Os_TE_403705 Chr4 31916135 31916134 - COPI2_LTR 4733 0.0222 (48/2162) 0 * Os_TE_403706 Os_TE_403687 Chr4 31908244 31908245 + ORSgTETNOOT01219 231 0.0003 (1/2976) 0 * Os_TE_403686 Os_TE_403686 Chr4 31908237 31908236 + ORSgTETNOOT00908 242 0.0003 (1/2971) 0 * Os_TE_403687 Os_TE_403685 Chr4 31908017 31908018 + SZ-9LTR 965 0.0104 (31/2983) 0 * Os_TE_403684 Os_TE_403684 Chr4 31908013 31908012 - SZ-9LTR 965 0.0097 (29/2981) 0 * Os_TE_403685 Os_TE_403683 Chr4 31907974 31907975 - COPIA2-LTR_OS 6433 0.0003 (1/2966) 0 * Os_TE_403682 Os_TE_403682 Chr4 31907970 31907969 + COPIA2-LTR_OS 6433 0.0003 (1/2967) 0 * Os_TE_403683 Os_TE_403678 Chr4 31906123 31906124 + HARB-1_OS 5166 0.0003 (1/2984) 0 * Os_TE_403677 Os_TE_403677 Chr4 31906121 31906120 - HARB-1_OS 5166 0.0003 (1/2980) 0 * Os_TE_403678 Os_TE_403671 Chr4 31900044 31900043 - ORSgTEMT02400246 177 0.0007 (2/2996) 0 * Os_TE_403670 Os_TE_403670 Chr4 31900043 31900044 - TYPEM 227 0.0007 (2/2995) 0 * Os_TE_403671 Os_TE_403666 Chr4 31895220 31895221 + MuDR2_OS 6770 0.0123 (36/2927) 0 * Os_TE_403665 Os_TE_403665 Chr4 31895211 31895210 - MuDR2_OS 6770 0.0400 (118/2950) 0 * Os_TE_403666 Os_TE_403640 Chr4 31883267 31887710 - SC-7_LTR 4431 0.1610 (482/2994) 1 Intact * Os_TE_403637 Chr4 31880486 31880487 + RIREX_LTR 8828 0.0031 (9/2859) 0 * Os_TE_403636 Os_TE_403636 Chr4 31880482 31880481 - RIREX_LTR 8828 0.0030 (9/2971) 0 * Os_TE_403637 Os_TE_403628 Chr4 31879181 31878933 + ORSgTEMT01601525 239 0.8759 (2561/2924) 1 Intact Os_TE_403624 Os_TE_403624 Chr4 31878933 31879162 - ORSgTEMT01602413 239 0.8967 (2612/2913) 1 Intact Os_TE_403628 Os_TE_403621 Chr4 31878079 31878080 + ORSiTERTOOT00226 792 0.0017 (5/2966) 0 * Os_TE_403620 Os_TE_403620 Chr4 31878075 31878074 - SZ-22_LTR 4403 0.0017 (5/2986) 0 * Os_TE_403621 Os_TE_403619 Chr4 31878006 31878007 - SC-8_LTR 4951 0.0007 (2/2992) 0 * * Os_TE_403617 Chr4 31877545 31877544 - SC-3_LTR 5748 0.0003 (1/2999) 0 * * Os_TE_403612 Chr4 31876593 31876594 + SZ-55_LTR 10318 0.0013 (4/2995) 0 * * Os_TE_403587 Chr4 31860421 31860422 - SC-3_LTR 5748 0.0004 (1/2780) 0 * * Os_TE_403585 Chr4 31860308 31860309 + ORSgTETNOOT01219 231 0.0030 (9/2957) 0 * * Os_TE_403579 Chr4 31854297 31854298 + RIRE2_LTR 11306 0.0008 (2/2589) 0 * Os_TE_403578 Os_TE_403578 Chr4 31854293 31854292 - RIRE2_LTR 11306 0.0010 (2/1910) 0 * Os_TE_403579 Os_TE_403566 Chr4 31852015 31852016 + SZ-48LTR 3632 0.0007 (2/2859) 0 * * Os_TE_403552 Chr4 31849965 31849966 - COPI2_LTR 4733 0.0003 (1/2993) 0 * Os_TE_403551 Os_TE_403551 Chr4 31849961 31849960 + COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_403552 Os_TE_403548 Chr4 31848004 31848005 + ORSgTETNOOT00032 218 0.0104 (31/2975) 0 * * Os_TE_403535 Chr4 31839720 31839719 + TREP219 104 0.0017 (5/2990) 0 * Os_TE_403534 Os_TE_403534 Chr4 31839719 31839720 - TREP219 104 0.0017 (5/2988) 0 * Os_TE_403535 Os_TE_403527 Chr4 31836637 31836638 + MuDR2_OS 6770 0.0035 (10/2864) 0 * * Os_TE_403525 Chr4 31836621 31836622 + MuDR3_OS 8604 0.0104 (29/2786) 0 * Os_TE_403524 Os_TE_403524 Chr4 31836613 31836612 - MuDR3_OS 8604 0.0083 (24/2895) 0 * Os_TE_403525 Os_TE_403515 Chr4 31830808 31830807 + DS-RICE4N 715 0.0191 (57/2978) 0 * * Os_TE_403514 Chr4 31830089 31829932 + UNIQUE 158 0.2644 (767/2901) 1 Intact * Os_TE_403502 Chr4 31823527 31823528 - ORSgTEMT02400179 221 0.0027 (8/2997) 0 * Os_TE_403501 Os_TE_403501 Chr4 31823526 31823525 - TYPEM 227 0.0030 (9/2996) 0 * Os_TE_403502 Os_TE_403498 Chr4 31818853 31818852 + SETARIA1 1293 0.0010 (3/2929) 0 * * Os_TE_403497 Chr4 31817527 31817528 - OSLINE1_1 4159 0.0033 (10/2998) 0 * * Os_TE_403493 Chr4 31816652 31816653 - NDNA1TNA_OS 334 0.0017 (5/2999) 0 * Os_TE_403492 Os_TE_403492 Chr4 31816650 31816649 + NDNA1TNA_OS 334 0.0017 (5/2998) 0 * Os_TE_403493 Os_TE_403491 Chr4 31816499 31816500 + NDNA1TNA_OS 334 0.0017 (5/2995) 0 * Os_TE_403490 Os_TE_403490 Chr4 31816497 31816496 - NDNA1TNA_OS 334 0.0017 (5/2992) 0 * Os_TE_403491 Os_TE_403487 Chr4 31816137 31816136 - RETRO1_LTR 8314 0.0057 (16/2787) 0 * * Os_TE_403482 Chr4 31812148 31812147 + ORSiTERTOOT00226 792 0.0003 (1/2992) 0 * * Os_TE_403481 Chr4 31810930 31810931 - NDNA1TNA_OS 334 0.0003 (1/2995) 0 * Os_TE_403480 Os_TE_403480 Chr4 31810928 31810927 + NDNA1TNA_OS 334 0.0003 (1/2996) 0 * Os_TE_403481 Os_TE_403476 Chr4 31810482 31810481 + RIREX_LTR 8828 0.0003 (1/2974) 0 * * Os_TE_403474 Chr4 31810252 31810253 - COPIA2-LTR_OS 6433 0.0449 (134/2982) 0 * * Os_TE_403472 Chr4 31810217 31810218 - RIRE2_LTR 11306 0.0014 (4/2933) 0 * Os_TE_403471 Os_TE_403471 Chr4 31810213 31810212 + RIRE2_LTR 11306 0.0010 (3/2964) 0 * Os_TE_403472 Os_TE_403468 Chr4 31809579 31809578 - ORSgTEMT01400015 213 0.0010 (3/2996) 0 * Os_TE_403467 Os_TE_403467 Chr4 31809575 31809576 + STOWAWAY9_OS 235 0.0010 (3/2994) 0 * Os_TE_403468 Os_TE_403459 Chr4 31807006 31807005 - RETRO1_LTR 8314 0.0007 (2/2950) 0 * * Os_TE_403454 Chr4 31806719 31806718 - ORSgTETN00200001 10994 0.0004 (1/2822) 0 * * Os_TE_403450 Chr4 31806290 31806291 - STOWAWAY51_OS 246 0.0140 (42/2995) 0 * * Os_TE_403435 Chr4 31803681 31803682 + NDNA1TNA_OS 334 0.0379 (112/2952) 0 * * Os_TE_403431 Chr4 31802137 31802138 - ORSgTEMT00501711 149 0.0004 (1/2602) 0 * * Os_TE_403430 Chr4 31801952 31801953 + RETRO2_LTR 12874 0.0398 (119/2990) 0 * * Os_TE_403417 Chr4 31793101 31793102 - SC-8_LTR 4951 0.0003 (1/2971) 0 * Os_TE_403416 Os_TE_403416 Chr4 31793097 31793096 + SC-8_LTR 4951 0.0003 (1/2976) 0 * Os_TE_403417 Os_TE_403415 Chr4 31793043 31793044 + SC-8_LTR 4951 0.0003 (1/2973) 0 * Os_TE_403414 Os_TE_403414 Chr4 31793039 31793038 - SC-8_LTR 4951 0.0003 (1/2978) 0 * Os_TE_403415 Os_TE_403411 Chr4 31790086 31790085 + STOWAWAY51_OS 246 0.0038 (11/2898) 0 * * Os_TE_403410 Chr4 31790080 31790081 - STOWAWAY51_OS 246 0.0037 (11/2988) 0 * Os_TE_403409 Os_TE_403409 Chr4 31790076 31790075 + ORSgTEMT01600726 235 0.0037 (11/2984) 0 * Os_TE_403410 Os_TE_403406 Chr4 31786946 31786947 - RIREX_LTR 8828 0.0004 (1/2761) 0 * Os_TE_403405 Os_TE_403405 Chr4 31786942 31786941 + RIREX_LTR 8828 0.0007 (2/2950) 0 * Os_TE_403406 Os_TE_403402 Chr4 31786460 31786461 - NDNA1TNA_OS 334 0.0539 (137/2543) 0 * * Os_TE_403399 Chr4 31786143 31786142 + ORSgTEMT00500201 140 0.0728 (217/2982) 0 * * Os_TE_403396 Chr4 31785425 31785426 - ORSgTEMT02400179 221 0.0350 (103/2943) 0 * Os_TE_403395 Os_TE_403395 Chr4 31785424 31785423 - TYPEM 227 0.0334 (100/2992) 0 * Os_TE_403396 Os_TE_403394 Chr4 31784332 31784331 + ORSgTETNOOT00032 218 0.0017 (5/2990) 0 * * Os_TE_403393 Chr4 31784078 31783911 - F804 170 0.6777 (2023/2985) 1 Intact Os_TE_403392 Os_TE_403392 Chr4 31783909 31784078 + F804 170 0.6794 (2024/2979) 1 Intact Os_TE_403393 Os_TE_403391 Chr4 31783897 31783898 + RETRO2_LTR 12874 0.0034 (10/2963) 0 * Os_TE_403390 Os_TE_403390 Chr4 31783893 31783892 - RETRO2_LTR 12874 0.0058 (12/2056) 0 * Os_TE_403391 Os_TE_403388 Chr4 31783841 31783840 + RETRO2A_LTR 12895 0.1628 (457/2807) 0 * * Os_TE_403380 Chr4 31782231 31782232 - OLO24 345 0.0057 (17/2998) 0 * Os_TE_403379 Os_TE_403379 Chr4 31782229 31782228 + OLO24 345 0.0057 (17/2996) 0 * Os_TE_403380 Os_TE_403378 Chr4 31782040 31782039 + ORSgTETNOOT00032 218 0.0174 (52/2995) 0 * * Os_TE_403377 Chr4 31782003 31782004 + TWIFB1 3737 0.1084 (324/2990) 0 * * Os_TE_403375 Chr4 31781722 31781723 + NDNA1TNA_OS 334 0.0134 (40/2980) 0 * Os_TE_403374 Os_TE_403374 Chr4 31781720 31781719 - NDNA1TNA_OS 334 0.0144 (43/2980) 0 * Os_TE_403375 Os_TE_403368 Chr4 31780895 31780896 + SC-7_LTR 4431 0.0020 (6/2998) 0 * Os_TE_403367 Os_TE_403367 Chr4 31780891 31780890 - SC-7_LTR 4431 0.0020 (6/2995) 0 * Os_TE_403368 Os_TE_403360 Chr4 31776503 31776504 + RETRO1_LTR 8314 0.0003 (1/2964) 0 * Os_TE_403359 Os_TE_403359 Chr4 31776499 31776498 - RETRO1_LTR 8314 0.0003 (1/2975) 0 * Os_TE_403360 Os_TE_403355 Chr4 31775803 31775802 + MuDR4_OS 7610 0.0003 (1/2972) 0 * * Os_TE_403352 Chr4 31775345 31775344 - OLO24 345 0.0461 (137/2972) 0 * * Os_TE_403351 Chr4 31775336 31775335 + COPIA2-LTR_OS 6433 0.0004 (1/2852) 0 * * Os_TE_403348 Chr4 31774514 31774515 + F770 284 0.0444 (133/2996) 0 * Os_TE_403347 Os_TE_403347 Chr4 31774512 31774511 - F770 284 0.0451 (135/2996) 0 * Os_TE_403348 Os_TE_403341 Chr4 31773977 31773978 - RETROSAT4_LTR 13504 0.0037 (11/2975) 0 * Os_TE_403340 Os_TE_403340 Chr4 31773973 31773972 + RETROSAT4_LTR 13504 0.0033 (10/2993) 0 * Os_TE_403341 Os_TE_403329 Chr4 31768933 31768934 + INDITTO 263 0.0027 (8/2992) 0 * Os_TE_403328 Os_TE_403328 Chr4 31768931 31768930 - INDITTO 263 0.0030 (9/2988) 0 * Os_TE_403329 Os_TE_403324 Chr4 31768390 31768391 - ORSgTETNOOT00053 263 0.0020 (6/2974) 0 * Os_TE_403323 Os_TE_403323 Chr4 31768388 31768387 - INDITTO 263 0.0020 (6/2970) 0 * Os_TE_403324 Os_TE_403322 Chr4 31768209 31768210 - MuDR4_OS 7610 0.0020 (6/2978) 0 * Os_TE_403321 Os_TE_403321 Chr4 31768200 31768199 - MuDR4_OS 7610 0.0017 (5/2978) 0 * Os_TE_403322 Os_TE_403319 Chr4 31767063 31767062 + MuDR2_OS 6770 0.0010 (3/2995) 0 * * Os_TE_403315 Chr4 31764149 31764148 - STOWAWAY51_OS 246 0.0094 (28/2992) 0 * Os_TE_403314 Os_TE_403314 Chr4 31764143 31764144 + STOWAWAY51_OS 246 0.0093 (28/2996) 0 * Os_TE_403315 Os_TE_403313 Chr4 31764026 31764027 - ORSgTETNOOT00754 253 0.0033 (10/2996) 0 * Os_TE_403312 Os_TE_403312 Chr4 31764022 31764021 + ORSgTETNOOT01686 252 0.0033 (10/2995) 0 * Os_TE_403313 Os_TE_403306 Chr4 31762553 31762554 + HARB-1_OS 5166 0.0003 (1/2992) 0 * * Os_TE_403305 Chr4 31762551 31762550 + ORSgTETNOOT00908 242 0.0077 (23/2985) 0 * * Os_TE_403304 Chr4 31762510 31762511 - ORSgTEMT00600304 361 0.0047 (14/2996) 0 * Os_TE_403303 Os_TE_403303 Chr4 31762507 31762506 - CASTAWAY 364 0.0047 (14/2993) 0 * Os_TE_403304 Os_TE_403302 Chr4 31762244 31762245 - SZ-22_LTR 4403 0.0003 (1/2999) 0 * Os_TE_403301 Os_TE_403301 Chr4 31762240 31762239 + SZ-22_LTR 4403 0.0003 (1/2998) 0 * Os_TE_403302 Os_TE_403300 Chr4 31761830 31761831 + NDNA1TNA_OS 334 0.0033 (10/2996) 0 * Os_TE_403299 Os_TE_403299 Chr4 31761828 31761827 - NDNA1TNA_OS 334 0.0033 (10/2999) 0 * Os_TE_403300 Os_TE_403297 Chr4 31761011 31761012 + MUDRN1_OS 764 0.0187 (56/2996) 0 * Os_TE_403296 Os_TE_403296 Chr4 31761003 31761002 - MUDRN1_OS 764 0.0180 (54/2995) 0 * Os_TE_403297 Os_TE_403293 Chr4 31760181 31760182 - HARB-1_OS 5166 0.0034 (10/2984) 0 * Os_TE_403292 Os_TE_403292 Chr4 31760179 31760178 + HARB-1_OS 5166 0.0034 (10/2983) 0 * Os_TE_403293 Os_TE_403283 Chr4 31754166 31754167 - SC-3_LTR 5748 0.0007 (2/2984) 0 * Os_TE_403282 Os_TE_403282 Chr4 31754162 31754161 + ORSiTERTOOT00296 5553 0.0003 (1/2979) 0 * Os_TE_403283 Os_TE_403279 Chr4 31749829 31749830 - RETRO1_LTR 8314 0.0014 (4/2921) 0 * * Os_TE_403277 Chr4 31749052 31749053 + MUDRN3_OS 903 0.0575 (160/2785) 0 * Os_TE_403276 Os_TE_403276 Chr4 31749043 31749042 + MUDRN3_OS 903 0.0564 (157/2783) 0 * Os_TE_403277 Os_TE_403267 Chr4 31748331 31748332 - ORSgTEMT00901288 246 0.7098 (2121/2988) 0 * * Os_TE_403248 Chr4 31746131 31746132 - OSTE24 683 0.0010 (3/2985) 0 * * Os_TE_403246 Chr4 31745942 31745943 + RETRO2A_LTR 12895 0.0096 (28/2930) 0 * Os_TE_403245 Os_TE_403245 Chr4 31745938 31745937 - RETRO2A_LTR 12895 0.0096 (28/2927) 0 * Os_TE_403246 Os_TE_403244 Chr4 31745616 31745617 - COPIA2-LTR_OS 6433 0.0018 (5/2851) 0 * Os_TE_403243 Os_TE_403243 Chr4 31745612 31745611 + COPIA2-LTR_OS 6433 0.0014 (4/2902) 0 * Os_TE_403244 Os_TE_403242 Chr4 31745603 31745604 + MUDRN3_OS 903 0.0014 (4/2845) 0 * Os_TE_403241 Os_TE_403241 Chr4 31745596 31745595 + MUDRN3_OS 903 0.0011 (3/2849) 0 * Os_TE_403242 Os_TE_403239 Chr4 31745459 31745458 - MuDR4_OS 7610 0.0384 (112/2915) 0 * * Os_TE_403238 Chr4 31745370 31745371 - RIREX_LTR 8828 0.0049 (14/2847) 0 * * Os_TE_403236 Chr4 31744825 31744826 - RETROFIT_LTR 4866 0.0094 (28/2985) 0 * Os_TE_403235 Os_TE_403235 Chr4 31744822 31744821 + ORSiTERTOOT00033 4884 0.0094 (28/2984) 0 * Os_TE_403236 Os_TE_403233 Chr4 31744722 31744723 - ORSgTEMT00300160 419 0.0999 (252/2523) 0 * Os_TE_403232 Os_TE_403232 Chr4 31744717 31744716 + ORSgTEMT00300069 394 0.1658 (462/2786) 0 * Os_TE_403233 Os_TE_403231 Chr4 31744679 31744680 - TRUNCATOR2_LTR 2904 0.0016 (4/2502) 0 * * Os_TE_403227 Chr4 31742986 31742987 + INDITTO 263 0.0684 (205/2995) 0 * * Os_TE_403225 Chr4 31742761 31742762 - ORSgTETN00200001 10994 0.0017 (5/2992) 0 * Os_TE_403224 Os_TE_403224 Chr4 31742759 31742758 + SPMLIKE 10989 0.0017 (5/2991) 0 * Os_TE_403225 Os_TE_403223 Chr4 31742321 31742322 - RIRE2_LTR 11306 0.0010 (3/2958) 0 * * Os_TE_403212 Chr4 31728618 31728619 - SZ-48LTR 3632 0.0252 (71/2815) 0 * * Os_TE_403206 Chr4 31728362 31728363 - TYPEM 227 0.0003 (1/2939) 0 * * Os_TE_403196 Chr4 31726455 31726454 - ORSgTERT00200181 6815 0.0013 (3/2313) 0 * * Os_TE_403174 Chr4 31722304 31722303 - RIREX_LTR 8828 0.0010 (3/2962) 0 * * Os_TE_403172 Chr4 31721680 31721681 + SPMLIKE 10989 0.0010 (3/2948) 0 * * Os_TE_403159 Chr4 31720045 31720046 - RIRE3A_LTR 10580 0.0003 (1/2878) 0 * Os_TE_403158 Os_TE_403158 Chr4 31720041 31720040 + ORSiTERTOOT00027 10853 0.0003 (1/2868) 0 * Os_TE_403159 Os_TE_403151 Chr4 31719287 31719288 + ORSgTETNOOT00908 242 0.0010 (3/2973) 0 * * Os_TE_403147 Chr4 31716372 31716373 + NDNA2TNA_OS 346 0.0017 (5/2997) 0 * Os_TE_403146 Os_TE_403146 Chr4 31716370 31716369 - NDNA2TNA_OS 346 0.0018 (5/2786) 0 * Os_TE_403147 Os_TE_403144 Chr4 31715602 31715601 + ORSgTEMT01601591 242 0.0013 (4/2988) 0 * Os_TE_403143 Os_TE_403143 Chr4 31715596 31715597 + STOWAWAY51_OS 246 0.0017 (5/2874) 0 * Os_TE_403144 Os_TE_403140 Chr4 31713951 31713950 + INDITTO 263 0.0007 (2/2980) 0 * * Os_TE_403132 Chr4 31712063 31712062 + SZ-40LTR 2465 0.0060 (18/2993) 0 * Os_TE_403131 Os_TE_403131 Chr4 31712061 31712062 - GYPSY-A_LTR 8951 0.0064 (19/2990) 0 * Os_TE_403132 Os_TE_403130 Chr4 31711976 31711975 + ORSgTEMT01601591 242 0.1751 (522/2982) 0 * Os_TE_403129 Os_TE_403129 Chr4 31711970 31711971 + STOWAWAY51_OS 246 0.1769 (527/2979) 0 * Os_TE_403130 Os_TE_403121 Chr4 31711020 31711021 + TELIA 141 0.0053 (16/2994) 0 * * Os_TE_403106 Chr4 31710303 31710302 + RETRO2A_LTR 12895 0.1992 (557/2796) 0 * * Os_TE_403098 Chr4 31709678 31709679 - STOWAWAY51_OS 246 0.0003 (1/2923) 0 * * Os_TE_403096 Chr4 31709561 31708159 + OSTE33 1012 0.5991 (1775/2963) 1 Intact Os_TE_403094 Os_TE_403094 Chr4 31708158 31709571 + OSTE33 1012 0.5907 (1729/2927) 1 Intact Os_TE_403096 Os_TE_403092 Chr4 31707925 31707926 + RETRO1_LTR 8314 0.0474 (140/2956) 0 * Os_TE_403091 Os_TE_403091 Chr4 31707921 31707920 - RETRO1_LTR 8314 0.0445 (131/2947) 0 * Os_TE_403092 Os_TE_403090 Chr4 31707180 31707181 + ORSiCMCM00100019 2717 0.0027 (8/2944) 0 * Os_TE_403089 Os_TE_403089 Chr4 31707176 31707175 - TRUNCATOR2_LTR 2904 0.0031 (9/2948) 0 * Os_TE_403090 Os_TE_403085 Chr4 31705907 31705908 + RETRO1_LTR 8314 0.0043 (13/2993) 0 * * Os_TE_403082 Chr4 31705438 31705439 - RETRO1_LTR 8314 0.0094 (28/2989) 0 * Os_TE_403081 Os_TE_403081 Chr4 31705434 31705433 + RETRO2A_LTR 12895 0.0100 (30/2990) 0 * Os_TE_403082 Os_TE_403068 Chr4 31700239 31700238 - TYPEM 227 0.0013 (4/2992) 0 * * Os_TE_403066 Chr4 31699563 31699564 + ORSiTETN00100011 676 0.0700 (209/2987) 0 * Os_TE_403065 Os_TE_403065 Chr4 31699551 31699550 + DS-RICE4N 715 0.0686 (205/2989) 0 * Os_TE_403066 Os_TE_403058 Chr4 31696090 31696091 + SC-8_LTR 4951 0.0067 (20/2998) 0 * Os_TE_403057 Os_TE_403057 Chr4 31696086 31696085 - SC-8_LTR 4951 0.0063 (19/2998) 0 * Os_TE_403058 Os_TE_403055 Chr4 31694730 31694731 - SZ-35LTR 3853 0.0869 (260/2993) 0 * Os_TE_403054 Os_TE_403054 Chr4 31694726 31694725 + RETROSAT4_LTR 13504 0.0842 (252/2992) 0 * Os_TE_403055 Os_TE_403053 Chr4 31694428 31694429 - ORSiTERTOOT00332 5395 0.0244 (73/2987) 0 * * Os_TE_403043 Chr4 31688359 31688360 - RIRE2_LTR 11306 0.0674 (194/2880) 0 * Os_TE_403042 Os_TE_403042 Chr4 31688355 31688354 - ORSgTERT00201216 11284 0.0626 (186/2971) 0 * Os_TE_403043 Os_TE_403041 Chr4 31688323 31688324 - AMYLTP 383 0.0018 (5/2811) 0 * Os_TE_403040 Os_TE_403040 Chr4 31688315 31688314 + AMYLTP 383 0.0017 (5/2978) 0 * Os_TE_403041 Os_TE_403039 Chr4 31688072 31688073 + ORSgTETNOOT00908 242 0.0326 (97/2973) 0 * Os_TE_403038 Os_TE_403038 Chr4 31688065 31688064 + ORSgTETNOOT01219 231 0.0320 (95/2969) 0 * Os_TE_403039 Os_TE_403037 Chr4 31687998 31687999 - MuDR4_OS 7610 0.0857 (252/2942) 0 * Os_TE_403036 Os_TE_403036 Chr4 31687992 31687991 - MuDR4_OS 7610 0.0919 (269/2926) 0 * Os_TE_403037 Os_TE_403031 Chr4 31685785 31685786 + MuDR2_OS 6770 0.0060 (18/2991) 0 * Os_TE_403030 Os_TE_403030 Chr4 31685776 31685775 - MuDR2_OS 6770 0.0067 (20/2992) 0 * Os_TE_403031 Os_TE_403029 Chr4 31685629 31685630 + MuDR2_OS 6770 0.0003 (1/2987) 0 * * Os_TE_403026 Chr4 31685205 31685204 - SZ-35LTR 3853 0.0070 (21/2980) 0 * * Os_TE_403025 Chr4 31685150 31685151 - SZ-40LTR 2465 0.0037 (11/2981) 0 * * Os_TE_403022 Chr4 31684469 31684470 + RETRO2A_LTR 12895 0.0013 (4/2976) 0 * Os_TE_403021 Os_TE_403021 Chr4 31684465 31684464 - RETRO1_LTR 8314 0.0013 (4/2976) 0 * Os_TE_403022 Os_TE_403020 Chr4 31684005 31684006 - INDITTO 263 0.0003 (1/2984) 0 * * Os_TE_403017 Chr4 31681915 31681916 + RETROSAT2LTR 12796 0.2050 (613/2990) 0 * Os_TE_403016 Os_TE_403016 Chr4 31681913 31681912 - RETROSAT2LTR 12796 0.2114 (633/2995) 0 * Os_TE_403017 Os_TE_403014 Chr4 31680494 31680495 + MUDRN1_OS 764 0.0003 (1/2990) 0 * Os_TE_403013 Os_TE_403013 Chr4 31680486 31680485 - MUDRN1_OS 764 0.0007 (2/2988) 0 * Os_TE_403014 Os_TE_403002 Chr4 31677542 31677543 - CACTA-H 1152 0.0240 (71/2953) 0 * Os_TE_403001 Os_TE_403001 Chr4 31677540 31677539 + CACTA-H 1152 0.0226 (67/2959) 0 * Os_TE_403002 Os_TE_402997 Chr4 31676935 31676936 - INDITTO 263 0.0033 (10/2993) 0 * Os_TE_402996 Os_TE_402996 Chr4 31676933 31676932 + INDITTO 263 0.0037 (11/2991) 0 * Os_TE_402997 Os_TE_402995 Chr4 31676772 31676773 + INDITTO 263 0.0060 (18/2994) 0 * Os_TE_402994 Os_TE_402994 Chr4 31676770 31676769 - INDITTO 263 0.0060 (18/2995) 0 * Os_TE_402995 Os_TE_402992 Chr4 31676453 31676454 + F569 228 0.0003 (1/2978) 0 * Os_TE_402991 Os_TE_402991 Chr4 31676451 31676450 - F569 228 0.0003 (1/2968) 0 * Os_TE_402992 Os_TE_402990 Chr4 31676393 31676394 - MuDR4_OS 7610 0.0081 (24/2980) 0 * Os_TE_402989 Os_TE_402989 Chr4 31676386 31676385 - MuDR4_OS 7610 0.0085 (25/2957) 0 * Os_TE_402990 Os_TE_402988 Chr4 31676261 31676262 + F770 284 0.0047 (14/2984) 0 * Os_TE_402987 Os_TE_402987 Chr4 31676259 31676258 - F770 284 0.0047 (14/2988) 0 * Os_TE_402988 Os_TE_402984 Chr4 31675962 31675963 + OSTONOR1_LTR 6440 0.0010 (3/2979) 0 * Os_TE_402983 Os_TE_402983 Chr4 31675958 31675957 - OSTONOR1_LTR 6440 0.0010 (3/2973) 0 * Os_TE_402984 Os_TE_402980 Chr4 31675598 31675597 + ORSgTETNOOT01219 231 0.0971 (290/2986) 0 * * Os_TE_402978 Chr4 31675393 31675394 + NDNA1TNA_OS 334 0.1258 (375/2981) 0 * Os_TE_402977 Os_TE_402977 Chr4 31675391 31675390 - NDNA1TNA_OS 334 0.1220 (362/2968) 0 * Os_TE_402978 Os_TE_402973 Chr4 31674912 31674911 - F770 284 0.0019 (5/2668) 0 * * Os_TE_402963 Chr4 31667679 31667680 + SETARIA2 1142 0.0400 (118/2947) 0 * * Os_TE_402958 Chr4 31666046 31666045 + SZ-62LTR 3649 0.0251 (73/2911) 0 * * Os_TE_402945 Chr4 31658581 31658580 + SC-4_LTR 5218 0.0008 (2/2594) 0 * * Os_TE_402939 Chr4 31656473 31656472 - STOWAWAY51_OS 246 0.0011 (3/2802) 0 * * Os_TE_402935 Chr4 31656235 31656236 - STOWAWAY9_OS 235 0.0035 (10/2895) 0 * * Os_TE_402924 Chr4 31654036 31654035 + TNR2A 152 0.0843 (122/1447) 0 * * Os_TE_402915 Chr4 31651178 31651415 + ORSgTEMT01601488 239 0.8337 (1228/1473) 1 Intact * Os_TE_402910 Chr4 31649187 31649188 - OSTE24 683 0.0676 (101/1495) 0 * * Os_TE_402904 Chr4 31646081 31646082 + MuDR3_OS 8604 0.0072 (15/2074) 0 * * Os_TE_402900 Chr4 31642390 31642391 - OSTONOR1_LTR 6440 0.0017 (5/2978) 0 * * Os_TE_402895 Chr4 31640130 31640129 - COPIA2-LTR_OS 6433 0.0004 (1/2517) 0 * * Os_TE_402889 Chr4 31638590 31638591 + RIRE2_LTR 11306 0.0589 (144/2445) 0 * Os_TE_402888 Os_TE_402888 Chr4 31638586 31638585 - RIRE2_LTR 11306 0.0598 (146/2443) 0 * Os_TE_402889 Os_TE_402887 Chr4 31638242 31638243 - COPIA2-LTR_OS 6433 0.0026 (7/2676) 0 * * Os_TE_402875 Chr4 31633436 31633437 - RIREX_LTR 8828 0.0008 (2/2406) 0 * Os_TE_402874 Os_TE_402874 Chr4 31633432 31633431 + RIREX_LTR 8828 0.0008 (2/2601) 0 * Os_TE_402875 Os_TE_402873 Chr4 31633123 31633124 + HATOS1 3488 0.0042 (11/2621) 0 * Os_TE_402872 Os_TE_402872 Chr4 31633116 31633115 - HATOS1 3488 0.0042 (11/2619) 0 * Os_TE_402873 Os_TE_402858 Chr4 31630118 31630119 - RIRE2_LTR 11306 0.0055 (14/2557) 0 * Os_TE_402857 Os_TE_402857 Chr4 31630114 31630113 - ORSgTERT00201216 11284 0.0053 (13/2440) 0 * Os_TE_402858 Os_TE_402856 Chr4 31630011 31630010 + STOWAWAY51_OS 246 0.0036 (9/2527) 0 * Os_TE_402855 Os_TE_402855 Chr4 31630005 31630006 - STOWAWAY51_OS 246 0.0028 (7/2485) 0 * Os_TE_402856 Os_TE_402850 Chr4 31629076 31629075 - OSTE15 1168 0.2447 (630/2575) 0 * * Os_TE_402849 Chr4 31629053 31616557 - MuDR4_OS 7610 0.3578 (896/2504) 1 Intact Os_TE_402843 Os_TE_402843 Chr4 31616552 31629052 - MuDR4_OS 7610 0.3291 (823/2501) 1 Intact Os_TE_402849 Os_TE_402826 Chr4 31614603 31614604 - TYPEM 227 0.0037 (9/2407) 0 * * Os_TE_402824 Chr4 31614449 31614448 + TESSBIG 4057 0.0074 (18/2431) 0 * * Os_TE_402823 Chr4 31614182 31614181 - RIRE2_LTR 11306 0.0070 (17/2422) 0 * * Os_TE_402815 Chr4 31613758 31613757 + RETROSAT4_LTR 13504 0.0074 (18/2440) 0 * * Os_TE_402813 Chr4 31613259 31613260 - COPIA2-LTR_OS 6433 0.0004 (1/2420) 0 * Os_TE_402812 Os_TE_402812 Chr4 31613255 31613254 + COPIA2-LTR_OS 6433 0.0004 (1/2428) 0 * Os_TE_402813 Os_TE_402801 Chr4 31611235 31611236 + ORSgTEMT05000092 279 0.0017 (4/2324) 0 * * Os_TE_402799 Chr4 31610753 31610754 - MuDR3_OS 8604 0.0175 (41/2339) 0 * * Os_TE_402797 Chr4 31610730 31610731 + MuDR2_OS 6770 0.0009 (2/2318) 0 * Os_TE_402796 Os_TE_402796 Chr4 31610721 31610720 - MuDR2_OS 6770 0.0009 (2/2286) 0 * Os_TE_402797 Os_TE_402780 Chr4 31608915 31608914 + RETROSAT4_LTR 13504 0.0014 (3/2172) 0 * * Os_TE_402757 Chr4 31598229 31598228 - SZ-48LTR 3632 0.1405 (394/2804) 0 * * Os_TE_402755 Chr4 31596625 31596626 + SC-7_LTR 4431 0.0048 (14/2903) 0 * * Os_TE_402753 Chr4 31596265 31596266 + ORSiTERTOOT00333 4719 0.0010 (3/2927) 0 * Os_TE_402752 Os_TE_402752 Chr4 31596262 31596261 - ORSiTERTOOT00333 4719 0.0007 (2/2976) 0 * Os_TE_402753 Os_TE_402751 Chr4 31595233 31595234 + TOS17LTR 138 0.0048 (14/2891) 0 * * Os_TE_402747 Chr4 31594664 31594663 + RETROSAT4_LTR 13504 0.1618 (432/2670) 0 * * Os_TE_402738 Chr4 31593721 31593722 - TRUNCATOR 2918 0.0015 (4/2738) 0 * * Os_TE_402730 Chr4 31588765 31593492 + ORSiTERTOOT00333 4719 0.6734 (1544/2293) 1 Intact * Os_TE_402729 Chr4 31588013 31588014 + SZ-35LTR 3853 0.1387 (381/2747) 0 * * Os_TE_402725 Chr4 31587408 31587407 + COWARD-3 221 0.1566 (434/2771) 0 * * Os_TE_402716 Chr4 31584885 31584886 + F770 284 0.0062 (18/2899) 0 * * Os_TE_402713 Chr4 31583990 31583989 - SZ-35LTR 3853 0.0052 (15/2892) 0 * * Os_TE_402711 Chr4 31582902 31582901 - RPO_OS 1983 0.0007 (2/2894) 0 * * Os_TE_402710 Chr4 31581509 31581510 - Cassandra_OS-LTR 764 0.0062 (18/2893) 0 * Os_TE_402709 Os_TE_402709 Chr4 31581505 31581504 + Cassandra_OS-LTR 764 0.0062 (18/2897) 0 * Os_TE_402710 Os_TE_402706 Chr4 31581140 31581141 - ORSiTERTOOT00333 4719 0.0066 (19/2893) 0 * Os_TE_402705 Os_TE_402705 Chr4 31581137 31581136 + ORSiTERTOOT00333 4719 0.0066 (19/2889) 0 * Os_TE_402706 Os_TE_402703 Chr4 31580726 31580727 - SC-3_LTR 5748 0.0003 (1/2894) 0 * Os_TE_402702 Os_TE_402702 Chr4 31580722 31580721 - SC-3_LTR 5748 0.0003 (1/2894) 0 * Os_TE_402703 Os_TE_402700 Chr4 31577325 31577326 + ORSiTERTOOT00226 792 0.0018 (5/2818) 0 * Os_TE_402699 Os_TE_402699 Chr4 31577321 31577320 - SZ-22_LTR 4403 0.0018 (5/2757) 0 * Os_TE_402700 Os_TE_402692 Chr4 31577115 31568531 - MuDR3_OS 8604 0.2833 (820/2894) 1 Intact Os_TE_402688 Os_TE_402688 Chr4 31568528 31577115 - MuDR3_OS 8604 0.2805 (807/2877) 1 Intact Os_TE_402692 Os_TE_402686 Chr4 31568427 31568426 - MuDR2_OS 6770 0.0134 (14/1042) 0 * * Os_TE_402685 Chr4 31568169 31568170 - ZM13-2_OS 108 0.6595 (1894/2872) 0 * * Os_TE_402683 Chr4 31567121 31567122 - SC-8_LTR 4951 0.0007 (2/2943) 0 * * Os_TE_402682 Chr4 31566821 31566820 - LINE-4_OS 3662 0.0063 (17/2701) 0 * * Os_TE_402676 Chr4 31563514 31563515 + SC-8_LTR 4951 0.0009 (1/1160) 0 * Os_TE_402675 Os_TE_402675 Chr4 31563510 31563509 - SC-8_LTR 4951 0.0009 (1/1161) 0 * Os_TE_402676 Os_TE_402672 Chr4 31562976 31563187 + ORSgTEMT01601122 212 0.8981 (1022/1138) 1 Intact * Os_TE_402671 Chr4 31562568 31562569 - ORSiTETNOOT00199 3501 0.0189 (22/1167) 0 * Os_TE_402670 Os_TE_402670 Chr4 31562561 31562560 + TWIF 586 0.0147 (17/1159) 0 * Os_TE_402671 Os_TE_402666 Chr4 31559365 31558864 - DNAUN1_OS 408 0.3008 (837/2783) 1 Intact * Os_TE_402663 Chr4 31557967 31557966 + ORSgTEMT00100272 356 0.6183 (1848/2989) 0 * * Os_TE_402662 Chr4 31557638 31557637 + NDNA1TNA_OS 334 0.0003 (1/2994) 0 * * Os_TE_402651 Chr4 31552769 31552770 + NDNA1TNA_OS 334 0.0070 (21/2997) 0 * * Os_TE_402648 Chr4 31552710 31552709 + OSTE18 129 0.0077 (23/2997) 0 * * Os_TE_402647 Chr4 31552706 31552707 - OSTE18 129 0.0089 (26/2921) 0 * * Os_TE_402646 Chr4 31552696 31552695 + TESS 244 0.0007 (2/2969) 0 * * Os_TE_402641 Chr4 31551863 31551862 + TNR2A 152 0.0044 (13/2963) 0 * * Os_TE_402634 Chr4 31544882 31544883 - SC-3_LTR 5748 0.0003 (1/2998) 0 * * Os_TE_402620 Chr4 31542805 31542806 - MuDR4_OS 7610 0.0067 (16/2406) 0 * Os_TE_402619 Os_TE_402619 Chr4 31542798 31542797 - MuDR4_OS 7610 0.0069 (17/2453) 0 * Os_TE_402620 Os_TE_402615 Chr4 31541844 31541845 + ORSiCMCM00100019 2717 0.0043 (13/2989) 0 * Os_TE_402614 Os_TE_402614 Chr4 31541840 31541839 - TRUNCATOR2_LTR 2904 0.0040 (12/2988) 0 * Os_TE_402615 Os_TE_402594 Chr4 31535821 31535822 - RIRE3_LTR 12054 0.0003 (1/2986) 0 * * Os_TE_402579 Chr4 31528577 31528578 + HELITRON2_OS 15167 0.0856 (255/2978) 0 * * Os_TE_402578 Chr4 31528227 31528228 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * * Os_TE_402576 Chr4 31528141 31528142 - MUDRN1_OS 764 0.3734 (1111/2975) 0 * * Os_TE_402574 Chr4 31524138 31524139 + INDITTO 263 0.0128 (38/2964) 0 * Os_TE_402573 Os_TE_402573 Chr4 31524136 31524135 - INDITTO 263 0.0128 (38/2967) 0 * Os_TE_402574 Os_TE_402572 Chr4 31524022 31524023 + OSTE33 1012 0.2388 (712/2982) 0 * Os_TE_402571 Os_TE_402571 Chr4 31524013 31524012 + OSTE33 1012 0.1749 (484/2767) 0 * Os_TE_402572 Os_TE_402570 Chr4 31523956 31523955 + NDNA1TNA_OS 334 0.0201 (60/2979) 0 * * Os_TE_402569 Chr4 31523931 31523932 - MPING 430 0.0003 (1/2981) 0 * Os_TE_402568 Os_TE_402568 Chr4 31523929 31523928 + MPING 430 0.0003 (1/2918) 0 * Os_TE_402569 Os_TE_402567 Chr4 31523554 31523555 - ORSiTERT00100062 5674 0.0003 (1/2991) 0 * Os_TE_402566 Os_TE_402566 Chr4 31523550 31523549 + OSTONOR1_LTR 6440 0.0004 (1/2681) 0 * Os_TE_402567 Os_TE_402565 Chr4 31522764 31522765 - MDR2 6967 0.0104 (31/2978) 0 * Os_TE_402564 Os_TE_402564 Chr4 31522756 31522755 + MDR2 6967 0.0104 (31/2981) 0 * Os_TE_402565 Os_TE_402558 Chr4 31520189 31520190 + NDNA1TNA_OS 334 0.0023 (7/2996) 0 * Os_TE_402557 Os_TE_402557 Chr4 31520187 31520186 - NDNA1TNA_OS 334 0.0023 (7/2996) 0 * Os_TE_402558 Os_TE_402556 Chr4 31519842 31519843 + F569 228 0.0040 (12/2975) 0 * * Os_TE_402554 Chr4 31519508 31519509 - TESS 244 0.0027 (7/2579) 0 * Os_TE_402553 Os_TE_402553 Chr4 31519501 31519500 + TESS 244 0.0027 (8/2983) 0 * Os_TE_402554 Os_TE_402552 Chr4 31519453 31519452 - ORSgTEMT02400246 177 0.0004 (1/2267) 0 * Os_TE_402551 Os_TE_402551 Chr4 31519450 31519451 - TYPEM 227 0.0003 (1/2972) 0 * Os_TE_402552 Os_TE_402550 Chr4 31518560 31518561 + ORSgTEMT01601591 242 0.0003 (1/2973) 0 * * Os_TE_402548 Chr4 31518372 31518371 - ORSgTEMT00501447 126 0.0017 (5/2858) 0 * * Os_TE_402546 Chr4 31517919 31517918 + STOWAWAY44_OS 240 0.0131 (33/2516) -1 * * Os_TE_402537 Chr4 31517394 31517395 + ORSiTERTOOT00226 792 0.0007 (2/2953) 0 * Os_TE_402536 Os_TE_402536 Chr4 31517390 31517389 - SZ-22_LTR 4403 0.0007 (2/2960) 0 * Os_TE_402537 Os_TE_402533 Chr4 31516883 31516884 + MDR2 6967 0.0596 (178/2987) 0 * Os_TE_402532 Os_TE_402532 Chr4 31516875 31516874 - MDR2 6967 0.0599 (179/2990) 0 * Os_TE_402533 Os_TE_402531 Chr4 31516849 31516850 - COPIA2-LTR_OS 6433 0.0003 (1/2974) 0 * Os_TE_402530 Os_TE_402530 Chr4 31516845 31516844 + COPIA2-LTR_OS 6433 0.0003 (1/2971) 0 * Os_TE_402531 Os_TE_402515 Chr4 31510995 31510996 - SC-8_LTR 4951 0.0003 (1/2989) 0 * Os_TE_402514 Os_TE_402514 Chr4 31510991 31510990 + SC-8_LTR 4951 0.0003 (1/2987) 0 * Os_TE_402515 Os_TE_402512 Chr4 31505197 31505196 - ORSgTETNOOT00754 253 0.0107 (32/2981) 0 * * Os_TE_402507 Chr4 31502836 31502835 - NDNA1TNA_OS 334 0.0127 (38/2994) 0 * * Os_TE_402505 Chr4 31501727 31501728 + SC-8_LTR 4951 0.0020 (6/2984) 0 * Os_TE_402504 Os_TE_402504 Chr4 31501723 31501722 - SC-8_LTR 4951 0.0020 (6/2989) 0 * Os_TE_402505 Os_TE_402498 Chr4 31496941 31496942 + RETRO2A_LTR 12895 0.0085 (25/2928) 0 * Os_TE_402497 Os_TE_402497 Chr4 31496937 31496936 - RETRO1_LTR 8314 0.0086 (25/2922) 0 * Os_TE_402498 Os_TE_402496 Chr4 31496636 31496637 + RETRO2A_LTR 12895 0.0031 (9/2941) 0 * Os_TE_402495 Os_TE_402495 Chr4 31496632 31496631 - RETRO1_LTR 8314 0.0031 (9/2941) 0 * Os_TE_402496 Os_TE_402494 Chr4 31495899 31495900 + RIRE5-LTR_OS 6427 0.0007 (2/2996) 0 * Os_TE_402493 Os_TE_402493 Chr4 31495892 31495891 - RIRE5-LTR_OS 6427 0.0010 (3/2998) 0 * Os_TE_402494 Os_TE_402492 Chr4 31495320 31495321 + RIREX_LTR 8828 0.0167 (50/2998) 0 * Os_TE_402491 Os_TE_402491 Chr4 31495316 31495315 - RIREX_LTR 8828 0.0173 (52/2998) 0 * Os_TE_402492 Os_TE_402490 Chr4 31494744 31494745 + RIREX_LTR 8828 0.0518 (155/2994) 0 * * Os_TE_402487 Chr4 31494688 31494687 - SUSU 279 0.0017 (5/2990) 0 * * Os_TE_402481 Chr4 31493815 31493816 - NDNA1TNA_OS 334 0.0010 (3/2997) 0 * Os_TE_402480 Os_TE_402480 Chr4 31493813 31493812 + NDNA1TNA_OS 334 0.0010 (3/2996) 0 * Os_TE_402481 Os_TE_402479 Chr4 31493447 31493448 + OLO24 345 0.0643 (191/2972) 0 * Os_TE_402478 Os_TE_402478 Chr4 31493445 31493444 - OLO24 345 0.0647 (193/2982) 0 * Os_TE_402479 Os_TE_402475 Chr4 31491788 31491789 + COPIA2-LTR_OS 6433 0.0374 (112/2997) 0 * Os_TE_402474 Os_TE_402474 Chr4 31491784 31491783 - COPIA2-LTR_OS 6433 0.0387 (116/2998) 0 * Os_TE_402475 Os_TE_402471 Chr4 31491378 31491379 + ORSiTERTOOT00226 792 0.0013 (4/2996) 0 * Os_TE_402470 Os_TE_402470 Chr4 31491374 31491373 - SZ-22_LTR 4403 0.0019 (4/2093) 0 * Os_TE_402471 Os_TE_402469 Chr4 31491338 31491339 + RIREX_LTR 8828 0.0020 (6/2996) 0 * * Os_TE_402458 Chr4 31490384 31490385 - OSTE33 1012 0.0993 (297/2992) 0 * Os_TE_402457 Os_TE_402457 Chr4 31490374 31490373 - OSTE33 1012 0.1008 (302/2995) 0 * Os_TE_402458 Os_TE_402437 Chr4 31484334 31484333 + NDNA1TNA_OS 334 0.0288 (77/2673) 0 * Os_TE_402436 Os_TE_402436 Chr4 31484333 31484334 - ORSgTEMT00100124 360 0.0255 (76/2980) 0 * Os_TE_402437 Os_TE_402432 Chr4 31483209 31483210 + ORSgTETNOOT00908 242 0.0287 (86/2992) 0 * * Os_TE_402431 Chr4 31483024 31483023 + RIREX_LTR 8828 0.0013 (4/2974) 0 * * Os_TE_402430 Chr4 31483007 31482663 + OLO24 345 0.1202 (358/2979) 1 Intact Os_TE_402429 Os_TE_402429 Chr4 31482663 31483007 - OLO24 345 0.1201 (358/2981) 1 Intact Os_TE_402430 Os_TE_402424 Chr4 31482053 31482054 - RETRO2_LTR 12874 0.0007 (2/2937) 0 * Os_TE_402423 Os_TE_402423 Chr4 31482049 31482048 + RETRO2_LTR 12874 0.0007 (2/2961) 0 * Os_TE_402424 Os_TE_402408 Chr4 31473111 31473112 + TNR2A 152 0.0003 (1/2996) 0 * * Os_TE_402391 Chr4 31469503 31469504 + ORSgTEMT00800035 370 0.2514 (738/2935) 0 * Os_TE_402390 Os_TE_402390 Chr4 31469496 31469495 - AMYLTP 383 0.2646 (784/2963) 0 * Os_TE_402391 Os_TE_402378 Chr4 31467403 31467402 - TYPEM 227 0.0037 (11/2953) 0 * Os_TE_402377 Os_TE_402377 Chr4 31467402 31467403 - ORSgTEMT02400246 177 0.0041 (12/2955) 0 * Os_TE_402378 Os_TE_402363 Chr4 31459863 31459864 + COPIA2-LTR_OS 6433 0.0007 (2/2955) 0 * Os_TE_402362 Os_TE_402362 Chr4 31459859 31459858 - COPIA2-LTR_OS 6433 0.0007 (2/2954) 0 * Os_TE_402363 Os_TE_402359 Chr4 31458616 31458615 - ORSgTETNOOT01413 258 0.0017 (5/2936) 0 * * Os_TE_402354 Chr4 31457579 31457580 - INDITTO 263 0.0021 (6/2888) 0 * Os_TE_402353 Os_TE_402353 Chr4 31457577 31457576 + INDITTO 263 0.0021 (6/2891) 0 * Os_TE_402354 Os_TE_402352 Chr4 31457439 31457440 - MPING 430 0.0007 (2/2927) 0 * Os_TE_402351 Os_TE_402351 Chr4 31457437 31457436 + MPING 430 0.0007 (2/2934) 0 * Os_TE_402352 Os_TE_402348 Chr4 31456932 31456931 + INDITTO 263 0.0014 (4/2889) 0 * * Os_TE_402347 Chr4 31456824 31456825 + ORSgTEMT00100531 325 0.0442 (129/2921) 0 * * Os_TE_402332 Chr4 31455425 31455426 - COPIA2-LTR_OS 6433 0.1061 (318/2998) 0 * Os_TE_402331 Os_TE_402331 Chr4 31455421 31455420 + COPIA2-LTR_OS 6433 0.1059 (317/2992) 0 * Os_TE_402332 Os_TE_402328 Chr4 31454753 31454754 + ORSgTEMT00100531 325 0.0132 (37/2806) 0 * Os_TE_402327 Os_TE_402327 Chr4 31454751 31454750 - NDNA1TNA_OS 334 0.0132 (37/2793) 0 * Os_TE_402328 Os_TE_402319 Chr4 31452590 31452589 - STOWAWAY44_OS 240 0.0003 (1/2999) 0 * Os_TE_402318 Os_TE_402318 Chr4 31452587 31452588 + STOWAWAY44_OS 240 0.0003 (1/2997) 0 * Os_TE_402319 Os_TE_402311 Chr4 31446098 31446099 + OLO24 345 0.0007 (2/2992) 0 * Os_TE_402310 Os_TE_402310 Chr4 31446096 31446095 - OLO24 345 0.0007 (2/2996) 0 * Os_TE_402311 Os_TE_402308 Chr4 31445729 31445728 + HELITRON8_OS 8831 0.0003 (1/2999) 0 * * Os_TE_402306 Chr4 31444569 31444358 + ORSgTEMT01601122 212 0.3518 (970/2757) -1 Intact Os_TE_402305 Os_TE_402305 Chr4 31444330 31444569 + ORSgTEMT01601122 212 0.3870 (1122/2899) 1 Intact Os_TE_402306 Os_TE_402298 Chr4 31441253 31441254 - MPING 430 0.0067 (20/2990) 0 * Os_TE_402297 Os_TE_402297 Chr4 31441251 31441250 + MPING 430 0.0067 (20/2990) 0 * Os_TE_402298 Os_TE_402296 Chr4 31440878 31440542 + ORSgTEMT00101341 314 0.5961 (1784/2993) 1 Intact Os_TE_402292 Os_TE_402292 Chr4 31440534 31440876 - NDNA1TNA_OS 334 0.5915 (1764/2982) 1 Intact Os_TE_402296 Os_TE_402290 Chr4 31438380 31438381 + COPIA2-LTR_OS 6433 0.0007 (2/2997) 0 * * Os_TE_402283 Chr4 31432264 31432265 - NDNA1TNA_OS 334 0.2023 (580/2867) 0 * * Os_TE_402281 Chr4 31431645 31431644 + COPIA2-LTR_OS 6433 0.0004 (1/2718) 0 * * Os_TE_402280 Chr4 31431471 31431472 + STOWAWAY34_OS 256 0.0017 (5/2882) 0 * * Os_TE_402279 Chr4 31431327 31431326 + ORSgTEMT00700017 386 0.0004 (1/2807) 0 * * Os_TE_402276 Chr4 31430837 31430838 + TWIFB1 3737 0.0045 (10/2228) 0 * * Os_TE_402273 Chr4 31429503 31429504 - TEMPINDAS 4259 0.0017 (5/2986) 0 * * Os_TE_402267 Chr4 31428913 31428914 + RETRO2A_LTR 12895 0.0047 (13/2759) 0 * Os_TE_402266 Os_TE_402266 Chr4 31428909 31428908 - RETRO1_LTR 8314 0.0044 (13/2959) 0 * Os_TE_402267 Os_TE_402259 Chr4 31428365 31428366 - RIREX_LTR 8828 0.1418 (424/2991) 0 * * Os_TE_402255 Chr4 31427743 31427744 - NDNA1TNA_OS 334 0.0490 (128/2613) 0 * Os_TE_402254 Os_TE_402254 Chr4 31427741 31427740 + NDNA1TNA_OS 334 0.0415 (124/2990) 0 * Os_TE_402255 Os_TE_402253 Chr4 31427477 31427478 - ORSgTETNOOT01048 233 0.0420 (125/2974) 0 * * Os_TE_402251 Chr4 31427355 31427356 + F118 179 0.0228 (67/2942) 0 * * Os_TE_402250 Chr4 31426823 31426822 + F569 228 0.0003 (1/2993) 0 * * Os_TE_402249 Chr4 31426662 31426663 + RIREX_LTR 8828 0.0017 (5/2973) 0 * * Os_TE_402246 Chr4 31426322 31426323 + MPING 430 0.0590 (170/2879) 0 * Os_TE_402245 Os_TE_402245 Chr4 31426320 31426319 - MPING 430 0.0565 (169/2992) 0 * Os_TE_402246 Os_TE_402243 Chr4 31426010 31426009 - ORSiTERTOOT00329 5144 0.1412 (420/2975) 0 * * Os_TE_402241 Chr4 31425648 31425647 + COPI2_LTR 4733 0.0003 (1/2874) 0 * * Os_TE_402222 Chr4 31417860 31417861 - NDNA1TNA_OS 334 0.0003 (1/2966) 0 * Os_TE_402221 Os_TE_402221 Chr4 31417858 31417857 + NDNA1TNA_OS 334 0.0003 (1/2995) 0 * Os_TE_402222 Os_TE_402220 Chr4 31417852 31417853 + ORSgTETNOOT01668 244 0.0107 (32/2995) 0 * * Os_TE_402209 Chr4 31409200 31409201 + COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_402208 Os_TE_402208 Chr4 31409196 31409195 - COPIA2-LTR_OS 6433 0.0005 (1/1896) 0 * Os_TE_402209 Os_TE_402207 Chr4 31408500 31408262 - ORSgTEMT01601834 234 0.6178 (1823/2951) 1 Intact Os_TE_402206 Os_TE_402206 Chr4 31408262 31408500 - ORSgTEMT01601432 239 0.6075 (1740/2864) 1 Intact Os_TE_402207 Os_TE_402204 Chr4 31408116 31408117 - ORSgTEMT00100762 342 0.0061 (18/2969) 0 * * Os_TE_402193 Chr4 31396325 31396149 - TYPEM 227 0.8364 (1789/2139) 1 Intact * Os_TE_402183 Chr4 31389005 31389006 - RIREX_LTR 8828 0.0010 (3/2950) 0 * Os_TE_402182 Os_TE_402182 Chr4 31389001 31389000 - RIREX_LTR 8828 0.0010 (3/2964) 0 * Os_TE_402183 Os_TE_402181 Chr4 31388872 31388873 - MPING 430 0.0003 (1/2966) 0 * Os_TE_402180 Os_TE_402180 Chr4 31388870 31388869 + MPING 430 0.0003 (1/2967) 0 * Os_TE_402181 Os_TE_402178 Chr4 31388394 31388395 + NDNA1TNA_OS 334 0.0164 (49/2987) 0 * Os_TE_402177 Os_TE_402177 Chr4 31388392 31388391 - NDNA1TNA_OS 334 0.0164 (49/2986) 0 * Os_TE_402178 Os_TE_402164 Chr4 31383498 31383499 + CASGRANDA 465 0.0057 (17/2968) 0 * * Os_TE_402163 Chr4 31383193 31383194 + COPIA2-LTR_OS 6433 0.0003 (1/2962) 0 * Os_TE_402162 Os_TE_402162 Chr4 31383189 31383188 - COPIA2-LTR_OS 6433 0.0003 (1/2970) 0 * Os_TE_402163 Os_TE_402153 Chr4 31379342 31379343 - STOWAWAY11_OS 292 0.0003 (1/2915) 0 * * Os_TE_402147 Chr4 31376761 31376762 + INDITTO 263 0.0037 (11/2987) 0 * Os_TE_402146 Os_TE_402146 Chr4 31376759 31376758 - INDITTO 263 0.0037 (11/2987) 0 * Os_TE_402147 Os_TE_402144 Chr4 31376571 31376570 - NDNA1TNA_OS 334 0.0044 (13/2956) 0 * * Os_TE_402143 Chr4 31376532 31376531 + ORSgTEMT02400041 225 0.1233 (364/2951) 0 * Os_TE_402142 Os_TE_402142 Chr4 31376528 31376529 - ORSgTEMT02400246 177 0.1248 (368/2948) 0 * Os_TE_402143 Os_TE_402141 Chr4 31376300 31376301 - TEMPINDAS 4259 0.0031 (9/2931) 0 * * Os_TE_402133 Chr4 31375627 31375626 + ORSgTETNOOT01219 231 0.0003 (1/2933) 0 * * Os_TE_402131 Chr4 31374268 31374269 - ORSgTEMT02400179 221 0.0172 (51/2973) 0 * Os_TE_402130 Os_TE_402130 Chr4 31374267 31374266 - TYPEM 227 0.0179 (53/2967) 0 * Os_TE_402131 Os_TE_402128 Chr4 31373815 31373816 + MuDR4_OS 7610 0.0057 (17/2996) 0 * * Os_TE_402110 Chr4 31371717 31371716 + OSTE18 129 0.0140 (42/2996) 0 * * Os_TE_402100 Chr4 31369483 31369484 + F569 228 0.0003 (1/2943) 0 * * Os_TE_402098 Chr4 31366024 31366023 - ORSgTERT00200063 5773 0.0003 (1/2988) 0 * * Os_TE_402096 Chr4 31364616 31364617 - SC-8_LTR 4951 0.0037 (11/2997) 0 * Os_TE_402095 Os_TE_402095 Chr4 31364612 31364611 + ORSiTERTOOT00381 4988 0.0033 (10/2998) 0 * Os_TE_402096 Os_TE_402082 Chr4 31359916 31359915 + HARB-1_OS 5166 0.0003 (1/2991) 0 * Os_TE_402081 Os_TE_402081 Chr4 31359915 31359916 - HARB-1_OS 5166 0.0003 (1/2993) 0 * Os_TE_402082 Os_TE_402080 Chr4 31359706 31359705 - DNAUN1_OS 408 0.0003 (1/2981) 0 * * Os_TE_402071 Chr4 31358207 31358206 + ORSgTEMT01602181 239 0.0258 (77/2981) 0 * Os_TE_402070 Os_TE_402070 Chr4 31358204 31358205 - ORSgTEMT01601493 303 0.0259 (77/2970) 0 * Os_TE_402071 Os_TE_402058 Chr4 31355397 31355398 - COPI2_LTR 4733 0.0010 (3/2989) 0 * * Os_TE_402045 Chr4 31351956 31351957 - GYPSY-A_LTR 8951 0.0003 (1/2984) 0 * Os_TE_402044 Os_TE_402044 Chr4 31351952 31351951 + SZ-40LTR 2465 0.0003 (1/2979) 0 * Os_TE_402045 Os_TE_402039 Chr4 31349665 31349666 + ORSgTEMT01601934 207 0.0797 (237/2973) 0 * * Os_TE_402020 Chr4 31346171 31346170 - LINE-6_OS 4886 0.2150 (572/2660) 0 * * Os_TE_402019 Chr4 31345805 31345804 - MUDRN1_OS 764 0.0007 (2/2923) 0 * * Os_TE_402015 Chr4 31344854 31344855 - COPI2_LTR 4733 0.0003 (1/2949) 0 * Os_TE_402014 Os_TE_402014 Chr4 31344850 31344849 + COPI2_LTR 4733 0.0003 (1/2956) 0 * Os_TE_402015 Os_TE_402013 Chr4 31344484 31344485 - ORSiTERTOOT00350 5275 0.0023 (7/2981) 0 * Os_TE_402012 Os_TE_402012 Chr4 31344480 31344479 + ORSiTERTOOT00350 5275 0.0023 (7/2982) 0 * Os_TE_402013 Os_TE_402010 Chr4 31343420 31343421 - COPIA2-LTR_OS 6433 0.1714 (512/2987) 0 * Os_TE_402009 Os_TE_402009 Chr4 31343416 31343415 + COPIA2-LTR_OS 6433 0.1658 (495/2986) 0 * Os_TE_402010 Os_TE_402007 Chr4 31341188 31341187 + STOWAWAY9_OS 235 0.0074 (22/2964) 0 * Os_TE_402006 Os_TE_402006 Chr4 31341187 31341188 + STOWAWAY9_OS 235 0.0081 (24/2979) 0 * Os_TE_402007 Os_TE_402004 Chr4 31340702 31340701 + OSCOPIA2_LTR 5476 0.0053 (16/2995) 0 * * Os_TE_402001 Chr4 31340131 31340130 - HARB-1_OS 5166 0.0148 (44/2967) 0 * * Os_TE_401971 Chr4 31331338 31331339 - NDNA1TNA_OS 334 0.2607 (774/2969) 0 * Os_TE_401970 Os_TE_401970 Chr4 31331337 31331336 + ORSgTEMT00101341 314 0.2581 (766/2968) 0 * Os_TE_401971 Os_TE_401968 Chr4 31331036 31331035 + ORSgTEMT01601122 212 0.0010 (3/2974) 0 * * Os_TE_401967 Chr4 31330875 31330876 - ORSgTEMT00100408 333 0.0010 (3/2969) 0 * * Os_TE_401959 Chr4 31328524 31328525 - ORSgTEMT01601432 239 0.0004 (1/2576) 0 * * Os_TE_401951 Chr4 31327338 31327339 + BUHUI 375 0.0491 (146/2976) 0 * * Os_TE_401950 Chr4 31327336 31327335 - BUHUI 375 0.0071 (21/2961) 0 * * Os_TE_401927 Chr4 31317501 31317500 - ORSgTETNOOT01930 140 0.0021 (4/1942) 0 * Os_TE_401926 Os_TE_401926 Chr4 31317488 31317489 + ORSgTEMT00500864 109 0.0013 (4/2982) 0 * Os_TE_401927 Os_TE_401918 Chr4 31316270 31316271 + OSTE33 1012 0.0017 (5/2969) 0 * Os_TE_401917 Os_TE_401917 Chr4 31316261 31316260 - OSTE33 1012 0.0030 (9/2972) 0 * Os_TE_401918 Os_TE_401913 Chr4 31313137 31313138 - TYPEM 227 0.0003 (1/2981) 0 * * Os_TE_401911 Chr4 31313057 31313056 + ORSiTERTOOT00296 5553 0.0003 (1/2983) 0 * * Os_TE_401894 Chr4 31299655 31299656 - ORSgTEMT01701104 154 0.7685 (1670/2173) 0 * Os_TE_401893 Os_TE_401893 Chr4 31299651 31299650 - ORSgTEMT01701254 154 0.3130 (236/754) 0 * Os_TE_401894 Os_TE_401885 Chr4 31298634 31298633 + TNR2A 152 0.0019 (1/532) 0 * * Os_TE_401884 Chr4 31298577 31298578 - TNR2A 152 0.0074 (4/543) 0 * Os_TE_401883 Os_TE_401883 Chr4 31298560 31298559 + TNR2A 152 0.0074 (4/543) 0 * Os_TE_401884 Os_TE_401869 Chr4 31291890 31291889 + ORSgTEMT01701145 147 0.0019 (1/520) 0 * * Os_TE_401857 Chr4 31284383 31284384 - F569 228 0.0077 (4/517) 0 * Os_TE_401856 Os_TE_401856 Chr4 31284381 31284380 + F569 228 0.0077 (4/517) 0 * Os_TE_401857 Os_TE_401847 Chr4 31282879 31282880 - ORSgTEMT00200018 144 0.0003 (1/2986) 0 * * Os_TE_401846 Chr4 31282553 31282766 - ORSgTEMT01600164 242 0.2176 (523/2404) 1 Intact * Os_TE_401839 Chr4 31272664 31272663 - SZ-44LTR 1408 0.1280 (251/1961) 0 * * Os_TE_401836 Chr4 31271973 31271451 - MuDR4_OS 7610 0.1389 (355/2555) 1 Intact Os_TE_401834 Os_TE_401834 Chr4 31271450 31271969 - MuDR4_OS 7610 0.1384 (354/2558) 1 Intact Os_TE_401836 Os_TE_401823 Chr4 31267617 31267618 + RIRE5-LTR_OS 6427 0.0171 (51/2982) 0 * Os_TE_401822 Os_TE_401822 Chr4 31267610 31267609 - RIRE5-LTR_OS 6427 0.0178 (53/2985) 0 * Os_TE_401823 Os_TE_401820 Chr4 31265520 31265519 + OSR3_LTR 5201 0.0003 (1/2986) 0 * * Os_TE_401799 Chr4 31249696 31249697 - MUDR_N7_OS 1283 0.3383 (1007/2977) 0 * Os_TE_401798 Os_TE_401798 Chr4 31249689 31249688 + MUDR_N7_OS 1283 0.3494 (1035/2962) 0 * Os_TE_401799 Os_TE_401797 Chr4 31249632 31249633 + ORSiTERTOOT00296 5553 0.0007 (2/2995) 0 * Os_TE_401796 Os_TE_401796 Chr4 31249628 31249627 - SC-3_LTR 5748 0.0007 (2/2999) 0 * Os_TE_401797 Os_TE_401793 Chr4 31244149 31244150 + TWIFB1 3737 0.0030 (8/2679) 0 * * Os_TE_401792 Chr4 31243960 31243961 - ORSgTEMT00501447 126 0.0004 (1/2465) 0 * Os_TE_401791 Os_TE_401791 Chr4 31243958 31243957 + ORSgTETNOOT01930 140 0.0003 (1/2976) 0 * Os_TE_401792 Os_TE_401790 Chr4 31243946 31243947 + ORSgTEMT01400032 215 0.1751 (517/2952) 0 * * Os_TE_401789 Chr4 31243411 31243410 - ORSgTEMT01601432 239 0.0198 (59/2976) 0 * Os_TE_401788 Os_TE_401788 Chr4 31243368 31243369 + ORSgTEMT01602181 239 0.0234 (70/2994) 0 * Os_TE_401789 Os_TE_401785 Chr4 31238855 31238856 + ORSiTERTOOT00034 791 0.0003 (1/2990) 0 * Os_TE_401784 Os_TE_401784 Chr4 31238851 31238850 - SZ-22_LTR 4403 0.0003 (1/2988) 0 * Os_TE_401785 Os_TE_401782 Chr4 31238247 31238105 + ORSgTEMT00502327 143 0.8864 (2614/2949) 1 Intact Os_TE_401781 Os_TE_401781 Chr4 31238102 31238241 + ORSgTEMT00500852 140 0.8771 (2606/2971) 1 Intact Os_TE_401782 Os_TE_401776 Chr4 31237488 31237487 + ORSgTEMT02000020 195 0.4295 (1280/2980) 0 * * Os_TE_401766 Chr4 31235868 31235869 - MuDR2_OS 6770 0.0033 (9/2706) 0 * Os_TE_401765 Os_TE_401765 Chr4 31235860 31235859 + MuDR2_OS 6770 0.0037 (11/2948) 0 * Os_TE_401766 Os_TE_401764 Chr4 31235822 31235821 - ORSgTETNOOT01534 208 0.3291 (948/2881) 0 * * Os_TE_401749 Chr4 31234731 31234732 - NDNA1TNA_OS 334 0.0014 (4/2895) 0 * Os_TE_401748 Os_TE_401748 Chr4 31234729 31234728 + NDNA1TNA_OS 334 0.0014 (4/2885) 0 * Os_TE_401749 Os_TE_401747 Chr4 31233730 31233729 - ORSgTEMT00901723 248 0.3513 (1041/2963) 0 * * Os_TE_401744 Chr4 31233522 31233523 + ORSgTEMT00900024 245 0.3580 (1053/2941) 0 * * Os_TE_401736 Chr4 31226826 31226827 - MUDRN3_OS 903 0.0375 (112/2987) 0 * Os_TE_401735 Os_TE_401735 Chr4 31226818 31226817 + MUDRN2_OS 756 0.0375 (112/2987) 0 * Os_TE_401736 Os_TE_401713 Chr4 31221342 31221343 - COPI2_LTR 4733 0.0003 (1/2999) 0 * Os_TE_401712 Os_TE_401712 Chr4 31221338 31221337 + COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_401713 Os_TE_401705 Chr4 31214659 31214660 - RIREX_LTR 8828 0.0952 (271/2847) 0 * Os_TE_401704 Os_TE_401704 Chr4 31214655 31214654 + RIREX_LTR 8828 0.0900 (269/2989) 0 * Os_TE_401705 Os_TE_401680 Chr4 31200962 31200963 + ORSgTEMT06100010 269 0.0011 (3/2728) 0 * Os_TE_401679 Os_TE_401679 Chr4 31200960 31200959 - ORSgTEMT06100010 269 0.0011 (3/2732) 0 * Os_TE_401680 Os_TE_401671 Chr4 31199229 31199230 - RETRO1_LTR 8314 0.0003 (1/2918) 0 * Os_TE_401670 Os_TE_401670 Chr4 31199225 31199224 + RETRO2_LTR 12874 0.0003 (1/2974) 0 * Os_TE_401671 Os_TE_401648 Chr4 31186850 31186849 + RETRO2_LTR 12874 0.0918 (271/2951) 0 * * Os_TE_401604 Chr4 31170140 31170141 + ORSiTERTOOT00329 5144 0.0842 (252/2994) 0 * Os_TE_401603 Os_TE_401603 Chr4 31170133 31170132 - ORSiTERTOOT00329 5144 0.0881 (264/2996) 0 * Os_TE_401604 Os_TE_401598 Chr4 31166466 31166465 - SZ-9LTR 965 0.3637 (1077/2961) 0 * * Os_TE_401596 Chr4 31166215 31166216 + OSTE33 1012 0.0872 (261/2992) 0 * Os_TE_401595 Os_TE_401595 Chr4 31166206 31166205 + OSTE33 1012 0.0780 (232/2973) 0 * Os_TE_401596 Os_TE_401578 Chr4 31161611 31161466 - TNR2A 152 0.3527 (1054/2988) 1 Intact Os_TE_401577 Os_TE_401577 Chr4 31161464 31161611 + TNR2A 152 0.3574 (1053/2946) 1 Intact Os_TE_401578 Os_TE_401571 Chr4 31160792 31160791 + STOWAWAY44_OS 240 0.0007 (2/2977) 0 * Os_TE_401570 Os_TE_401570 Chr4 31160789 31160790 - STOWAWAY44_OS 240 0.0007 (2/2983) 0 * Os_TE_401571 Os_TE_401540 Chr4 31153975 31153976 - OSTONOR1_LTR 6440 0.0005 (1/1989) 0 * * Os_TE_401510 Chr4 31146607 31146606 + RETROSAT4_LTR 13504 0.0007 (2/2690) 0 * * Os_TE_401508 Chr4 31146190 31146191 + RETRO2_LTR 12874 0.0246 (71/2881) 0 * Os_TE_401507 Os_TE_401507 Chr4 31146186 31146185 - SZLTR 1249 0.0262 (78/2976) 0 * Os_TE_401508 Os_TE_401499 Chr4 31141584 31141585 - SC-8_LTR 4951 0.0097 (29/2989) 0 * Os_TE_401498 Os_TE_401498 Chr4 31141580 31141579 + SC-8_LTR 4951 0.0094 (28/2989) 0 * Os_TE_401499 Os_TE_401494 Chr4 31138495 31138496 - ORSgTEMT01601432 239 0.0876 (259/2955) 0 * Os_TE_401493 Os_TE_401493 Chr4 31138491 31138490 - ORSgTEMT01600201 236 0.0747 (221/2960) 0 * Os_TE_401494 Os_TE_401491 Chr4 31137975 31137974 - SETARIA1 1293 0.0140 (42/2990) 0 * * Os_TE_401488 Chr4 31136726 31136727 + ORSgTEMT01602181 239 0.0003 (1/2956) 0 * * Os_TE_401487 Chr4 31136687 31136688 - STOWAWAY8_OS 259 0.0149 (44/2959) 0 * * Os_TE_401483 Chr4 31134676 31134677 + RETRO2_LTR 12874 0.0020 (6/2956) 0 * Os_TE_401482 Os_TE_401482 Chr4 31134672 31134671 - RETRO2_LTR 12874 0.0020 (6/2975) 0 * Os_TE_401483 Os_TE_401479 Chr4 31133523 31133522 + STOWAWAY21_OS 243 0.0003 (1/2990) 0 * Os_TE_401478 Os_TE_401478 Chr4 31133522 31133523 + ORSgTEMT01601122 212 0.0003 (1/2988) 0 * Os_TE_401479 Os_TE_401471 Chr4 31126607 31126606 - ORSiTETNOOT00156 3648 0.0021 (6/2920) 0 * * Os_TE_401467 Chr4 31126337 31126336 - ORSgTETNOOT00908 242 0.0085 (25/2948) 0 * Os_TE_401466 Os_TE_401466 Chr4 31126336 31126337 + ORSgTETNOOT00908 242 0.0085 (25/2943) 0 * Os_TE_401467 Os_TE_401461 Chr4 31126126 31126125 + STOWAWAY51_OS 246 0.0020 (6/2943) 0 * Os_TE_401460 Os_TE_401460 Chr4 31126120 31126121 - STOWAWAY51_OS 246 0.0020 (6/2946) 0 * Os_TE_401461 Os_TE_401457 Chr4 31125755 31125754 + RETRO2_LTR 12874 0.0131 (37/2819) 0 * * Os_TE_401455 Chr4 31124915 31124916 + ORSgTEMT00101674 340 0.1147 (341/2972) 0 * Os_TE_401454 Os_TE_401454 Chr4 31124912 31124911 + NDNA1TNA_OS 334 0.1139 (341/2993) 0 * Os_TE_401455 Os_TE_401449 Chr4 31123907 31123906 - F569 228 0.0005 (1/2200) 0 * * Os_TE_401448 Chr4 31123010 31123009 - NDNA1TNA_OS 334 0.1229 (366/2977) 0 * Os_TE_401447 Os_TE_401447 Chr4 31123002 31123003 + NDNA1TNA_OS 334 0.1270 (368/2898) 0 * Os_TE_401448 Os_TE_401445 Chr4 31118675 31118676 + OLO24 345 0.0864 (258/2986) 0 * Os_TE_401444 Os_TE_401444 Chr4 31118673 31118672 - OLO24 345 0.0854 (255/2987) 0 * Os_TE_401445 Os_TE_401429 Chr4 31115242 31115241 + COPIA2-LTR_OS 6433 0.0010 (3/2979) 0 * * Os_TE_401410 Chr4 31096682 31096683 + OSR3_LTR 5201 0.0013 (4/2999) 0 * Os_TE_401409 Os_TE_401409 Chr4 31096678 31096677 - OSR3_LTR 5201 0.0013 (4/2999) 0 * Os_TE_401410 Os_TE_401401 Chr4 31093867 31093866 - SINE9_OS 293 0.0008 (1/1279) 0 * * Os_TE_401400 Chr4 31093350 31093351 - NDNA1TNA_OS 334 0.0317 (95/2994) 0 * Os_TE_401399 Os_TE_401399 Chr4 31093348 31093347 + NDNA1TNA_OS 334 0.0318 (95/2987) 0 * Os_TE_401400 Os_TE_401395 Chr4 31091007 31091006 + ORSgTEMT00600360 369 0.0136 (36/2649) 0 * * Os_TE_401356 Chr4 31084689 31084688 - RETRO1_LTR 8314 0.0020 (6/2980) 0 * * Os_TE_401343 Chr4 31083128 31083127 + NDNA1TNA_OS 334 0.0110 (33/2995) 0 * * Os_TE_401339 Chr4 31076606 31076607 - ORSiTERTOOT00183 3603 0.0003 (1/2968) 0 * * Os_TE_401335 Chr4 31072548 31072547 - STOWAWAY41_OS 264 0.5454 (1598/2930) 0 * * Os_TE_401330 Chr4 31071508 31071509 - RIREX_LTR 8828 0.0759 (227/2991) 0 * Os_TE_401329 Os_TE_401329 Chr4 31071504 31071503 + RIREX_LTR 8828 0.0753 (225/2990) 0 * Os_TE_401330 Os_TE_401328 Chr4 31070719 31070718 - TYPEM 227 0.5410 (1618/2991) 0 * * Os_TE_401323 Chr4 31064738 31064739 + ORSgTETNOOT02577 232 0.4577 (1276/2788) 0 * * Os_TE_401315 Chr4 31061371 31061372 + ORSgTEMT00300063 413 0.0010 (3/2983) 0 * Os_TE_401314 Os_TE_401314 Chr4 31061361 31061360 + ORSgTEMT00300069 394 0.0010 (3/2984) 0 * Os_TE_401315 Os_TE_401256 Chr4 31044769 31044768 - DS-RICE2N 613 0.0003 (1/2895) 0 * * Os_TE_401217 Chr4 31028127 31028128 - RETROSAT2LTR 12796 0.0204 (61/2995) 0 * * Os_TE_401208 Chr4 31025170 31025171 - RIREX_LTR 8828 0.0007 (2/2995) 0 * * Os_TE_401193 Chr4 31023162 31023161 - ORSgTEMT01400014 209 0.1127 (333/2954) 0 * * Os_TE_401177 Chr4 31018933 31018934 - RIREX_LTR 8828 0.0003 (1/2985) 0 * * Os_TE_401175 Chr4 31018326 31018327 - F770 284 0.0258 (77/2982) 0 * * Os_TE_401107 Chr4 30995134 30995135 - DITTO 244 0.0014 (4/2943) 0 * * Os_TE_401090 Chr4 30992456 30992455 + MDR2 6967 0.0043 (12/2792) 0 * * Os_TE_401085 Chr4 30991578 30991579 - CACTA-H 1152 0.0475 (142/2991) 0 * Os_TE_401084 Os_TE_401084 Chr4 30991576 30991575 + CACTA-M 1129 0.0458 (137/2989) 0 * Os_TE_401085 Os_TE_401032 Chr4 30973967 30973966 + NDNA1TNA_OS 334 0.0417 (124/2973) 0 * Os_TE_401031 Os_TE_401031 Chr4 30973963 30973964 + ORSgTEMT00100531 325 0.0425 (126/2964) 0 * Os_TE_401032 Os_TE_401025 Chr4 30972197 30972198 - ORSiTERT00100062 5674 0.0003 (1/2867) 0 * * Os_TE_401018 Chr4 30970821 30970822 + ORSgTEMT00600272 361 0.0007 (2/2978) 0 * * Os_TE_400975 Chr4 30948789 30948790 + MuDR2_OS 6770 0.0389 (116/2980) 0 * Os_TE_400974 Os_TE_400974 Chr4 30948780 30948779 - MuDR2_OS 6770 0.0360 (107/2975) 0 * Os_TE_400975 Os_TE_400949 Chr4 30941639 30941640 + NDNA2TNA_OS 346 0.1177 (352/2990) 0 * Os_TE_400948 Os_TE_400948 Chr4 30941637 30941636 - NDNA2TNA_OS 346 0.1145 (342/2988) 0 * Os_TE_400949 Os_TE_400903 Chr4 30920345 30920344 - RETROSAT2LTR 12796 0.0364 (108/2965) 0 * * Os_TE_400882 Chr4 30905120 30905121 - SC-3_LTR 5748 0.0003 (1/2995) 0 * * Os_TE_400880 Chr4 30904131 30904132 + ORSiTERTOOT00296 5553 0.0003 (1/2982) 0 * Os_TE_400879 Os_TE_400879 Chr4 30904127 30904126 - SC-3_LTR 5748 0.0003 (1/2975) 0 * Os_TE_400880 Os_TE_400877 Chr4 30901351 30901352 + ORSiTERTOOT00296 5553 0.0003 (1/2990) 0 * Os_TE_400876 Os_TE_400876 Chr4 30901347 30901346 - SC-3_LTR 5748 0.0003 (1/2992) 0 * Os_TE_400877 Os_TE_400858 Chr4 30893355 30893356 - CRM-LTR_OS 7749 0.0003 (1/2999) 0 * Os_TE_400857 Os_TE_400857 Chr4 30893351 30893350 + CRM-LTR_OS 7749 0.0003 (1/2998) 0 * Os_TE_400858 Os_TE_400851 Chr4 30890679 30890678 + SC-8_LTR 4951 0.0007 (2/2945) 0 * * Os_TE_400823 Chr4 30878618 30878619 + NDNA1TNA_OS 334 0.0020 (6/2973) 0 * * Os_TE_400814 Chr4 30875161 30875162 + COPIA2-LTR_OS 6433 0.0003 (1/2974) 0 * Os_TE_400813 Os_TE_400813 Chr4 30875157 30875156 - COPIA2-LTR_OS 6433 0.0003 (1/2974) 0 * Os_TE_400814 Os_TE_400800 Chr4 30872607 30872608 - ORSiTERTOOT00441 4741 0.0003 (1/2981) 0 * Os_TE_400799 Os_TE_400799 Chr4 30872603 30872602 + ORSiTERTOOT00441 4741 0.0003 (1/2986) 0 * Os_TE_400800 Os_TE_400797 Chr4 30872558 30872559 - RETROFIT7_LTR 4788 0.0003 (1/2994) 0 * * Os_TE_400765 Chr4 30854309 30854310 + SC-8_LTR 4951 0.0003 (1/2979) 0 * * Os_TE_400764 Chr4 30852164 30852165 + HARB-1_OS 5166 0.0003 (1/2997) 0 * * Os_TE_400686 Chr4 30808146 30808147 - CASTAWAY 364 0.6861 (2055/2995) 0 * Os_TE_400685 Os_TE_400685 Chr4 30808144 30808143 - ORSgTEMT00600304 361 0.6849 (2043/2983) 0 * Os_TE_400686 Os_TE_400684 Chr4 30808138 30808139 - CASTAWAY 364 0.6845 (2048/2992) 0 * * Os_TE_400683 Chr4 30807449 30807448 - ORSgTEMT00700002 381 0.0003 (1/2997) 0 * * Os_TE_400650 Chr4 30790651 30790652 + INDITTO 263 0.0017 (5/2984) 0 * Os_TE_400649 Os_TE_400649 Chr4 30790649 30790648 - INDITTO 263 0.0013 (4/2985) 0 * Os_TE_400650 Os_TE_400634 Chr4 30780440 30780441 - COPIA2-LTR_OS 6433 0.0007 (2/2995) 0 * Os_TE_400633 Os_TE_400633 Chr4 30780436 30780435 - COPIA2-LTR_OS 6433 0.0007 (2/2996) 0 * Os_TE_400634 Os_TE_400632 Chr4 30780405 30780404 - OSTE18 129 0.0020 (6/2989) 0 * * Os_TE_400617 Chr4 30776393 30776394 - MPING 430 0.0067 (20/2991) 0 * * Os_TE_400593 Chr4 30764253 30764252 - F770 284 0.4705 (1404/2984) 0 * * Os_TE_400585 Chr4 30762452 30756620 + ORSiTERTOOT00329 5144 0.5303 (1551/2925) 1 Intact Os_TE_400581 Os_TE_400581 Chr4 30756620 30762452 - ORSiTERTOOT00329 5144 0.5491 (1643/2992) 1 Intact Os_TE_400585 Os_TE_400570 Chr4 30754125 30754126 + AMYLTP 383 0.4613 (1377/2985) 0 * Os_TE_400569 Os_TE_400569 Chr4 30754117 30754116 - AMYLTP 383 0.4590 (1362/2967) 0 * Os_TE_400570 Os_TE_400546 Chr4 30740532 30740533 + RETRO2_LTR 12874 0.0395 (110/2783) 0 * * Os_TE_400523 Chr4 30729195 30729196 + TELIA 141 0.0014 (4/2944) 0 * Os_TE_400522 Os_TE_400522 Chr4 30729187 30729186 - TELIA 141 0.0014 (4/2944) 0 * Os_TE_400523 Os_TE_400518 Chr4 30727805 30727806 - ORSiTERTOOT00402 2660 0.0037 (11/2992) 0 * Os_TE_400517 Os_TE_400517 Chr4 30727801 30727800 + ORSiTERTOOT00402 2660 0.0033 (10/2992) 0 * Os_TE_400518 Os_TE_400497 Chr4 30722029 30722030 - RETROSAT3_LTR 11537 0.0007 (2/2993) 0 * Os_TE_400496 Os_TE_400496 Chr4 30722025 30722024 + RETROSAT2LTRA 3112 0.0007 (2/2995) 0 * Os_TE_400497 Os_TE_400493 Chr4 30721205 30721206 + RETRO1_LTR 8314 0.0003 (1/2904) 0 * Os_TE_400492 Os_TE_400492 Chr4 30721201 30721200 - RETRO1_LTR 8314 0.0003 (1/2904) 0 * Os_TE_400493 Os_TE_400465 Chr4 30711081 30711082 - SC-3_LTR 5748 0.0003 (1/2945) 0 * Os_TE_400464 Os_TE_400464 Chr4 30711077 30711076 + ORSiTERTOOT00296 5553 0.0003 (1/2944) 0 * Os_TE_400465 Os_TE_400453 Chr4 30705683 30705682 - SC-7_LTR 4431 0.0003 (1/2949) 0 * * Os_TE_400414 Chr4 30677720 30677721 - INDITTO 263 0.5270 (1572/2983) 0 * Os_TE_400413 Os_TE_400413 Chr4 30677718 30677717 + INDITTO 263 0.5303 (1583/2985) 0 * Os_TE_400414 Os_TE_400411 Chr4 30675790 30675791 - RIREX_LTR 8828 0.2103 (629/2991) 0 * Os_TE_400410 Os_TE_400410 Chr4 30675786 30675785 + RIREX_LTR 8828 0.2134 (639/2994) 0 * Os_TE_400411 Os_TE_400379 Chr4 30641994 30641993 + SEVERIN-2 1952 0.0023 (7/2994) 0 * * Os_TE_400357 Chr4 30631169 30631168 - ORSgTEMT00900498 242 0.0007 (2/2983) 0 * * Os_TE_400356 Chr4 30629336 30629337 + ORSgTEMT00600272 361 0.0127 (38/2998) 0 * * Os_TE_400338 Chr4 30624074 30624075 + OSTE28 298 0.0013 (4/2994) 0 * Os_TE_400337 Os_TE_400337 Chr4 30624066 30624065 - OSTE28 298 0.0010 (3/2993) 0 * Os_TE_400338 Os_TE_400313 Chr4 30613775 30613631 + ORSgTEMT00501356 145 0.8622 (2584/2997) 1 Intact Os_TE_400309 Os_TE_400309 Chr4 30613629 30613775 - ORSgTEMT00501356 145 0.8641 (2587/2994) 1 Intact Os_TE_400313 Os_TE_400306 Chr4 30612932 30612931 + ORSgTEMT00300064 397 0.0010 (3/2990) 0 * * Os_TE_400301 Chr4 30612464 30612597 - ORSgTEMT00500578 129 0.8611 (2535/2944) 1 Intact * Os_TE_400299 Chr4 30611665 30611526 + ORSgTEMT00501356 145 0.8639 (2558/2961) 1 Intact Os_TE_400297 Os_TE_400297 Chr4 30611521 30611663 + ORSgTEMT00502327 143 0.8628 (2572/2981) 1 Intact Os_TE_400299 Os_TE_400295 Chr4 30611393 30610975 - ORSgTEMT00300160 419 0.4657 (1386/2976) 1 Intact * Os_TE_400291 Chr4 30610496 30610497 - OSCOPIA1_LTR 4754 0.0003 (1/2996) 0 * Os_TE_400290 Os_TE_400290 Chr4 30610492 30610491 + ORSiTERTOOT00020 2547 0.0003 (1/2998) 0 * Os_TE_400291 Os_TE_400289 Chr4 30608409 30608410 + ORSgTEMT05200196 285 0.1418 (424/2991) 0 * * Os_TE_400287 Chr4 30608006 30608007 - COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_400286 Os_TE_400286 Chr4 30608002 30608001 + COPI2_LTR 4733 0.0003 (1/2993) 0 * Os_TE_400287 Os_TE_400274 Chr4 30602534 30602533 - ORSgTEMT00501711 149 0.1422 (426/2995) 0 * Os_TE_400273 Os_TE_400273 Chr4 30602507 30602508 - ORSgTEMT00501305 145 0.0841 (237/2819) 0 * Os_TE_400274 Os_TE_400262 Chr4 30596947 30597209 + F770 284 0.4675 (1390/2973) 1 Intact * Os_TE_400259 Chr4 30596563 30596359 + ORSgTEMT01400032 215 0.8586 (2416/2814) 1 Intact Os_TE_400256 Os_TE_400256 Chr4 30596318 30596561 + ORSgTEMT01400031 216 0.8610 (2409/2798) 1 Intact Os_TE_400259 Os_TE_400245 Chr4 30592596 30592597 + SEVERIN-2 1952 0.0011 (3/2827) 0 * * Os_TE_400231 Chr4 30591022 30589918 + RETRO2_LTR 12874 0.4573 (1344/2939) 1 Solo_LTR Os_TE_400228 Os_TE_400228 Chr4 30589918 30591025 - RETRO2_LTR 12874 0.4471 (1311/2932) 1 Solo_LTR Os_TE_400231 Os_TE_400224 Chr4 30588964 30588963 - ORSgTEMT01601768 238 0.0013 (4/2979) 0 * Os_TE_400223 Os_TE_400223 Chr4 30588961 30588962 - ORSgTEMT01601432 239 0.0021 (6/2839) 0 * Os_TE_400224 Os_TE_400222 Chr4 30588108 30588109 + COPIA2-LTR_OS 6433 0.0003 (1/2953) 0 * Os_TE_400221 Os_TE_400221 Chr4 30588104 30588103 - COPIA2-LTR_OS 6433 0.0003 (1/2942) 0 * Os_TE_400222 Os_TE_400220 Chr4 30587626 30587627 - ORSgTEMT02400179 221 0.1417 (424/2992) 0 * Os_TE_400219 Os_TE_400219 Chr4 30587625 30587624 - TYPEM 227 0.1417 (424/2992) 0 * Os_TE_400220 Os_TE_400216 Chr4 30586050 30585462 + XIKE 594 0.8752 (2552/2916) 1 Intact * Os_TE_400200 Chr4 30572019 30571769 - ORSgTEMT01400019 216 0.8575 (2540/2962) 1 Intact * Os_TE_400196 Chr4 30571633 30571634 + TESS 244 0.0014 (4/2948) 0 * * Os_TE_400193 Chr4 30570886 30570887 - ORMOSIA 482 0.1466 (437/2981) 0 * * Os_TE_400187 Chr4 30570247 30570454 - ORSgTEMT01400038 210 0.8576 (2518/2936) 1 Intact * Os_TE_400180 Chr4 30564621 30564303 + SINE03_OS 360 0.8614 (2529/2936) 1 Intact * Os_TE_400176 Chr4 30563376 30563377 - ORSgTETN00200001 10994 0.1331 (388/2916) 0 * Os_TE_400175 Os_TE_400175 Chr4 30563374 30563373 + SPMLIKE 10989 0.1397 (411/2941) 0 * Os_TE_400176 Os_TE_400174 Chr4 30563084 30563085 - COPI2_LTR 4733 0.0007 (2/2936) 0 * * Os_TE_400164 Chr4 30562160 30562161 - RIREX_LTR 8828 0.0003 (1/2977) 0 * * Os_TE_400147 Chr4 30550471 30550472 - OsSN3 183 0.2535 (752/2966) 0 * Os_TE_400146 Os_TE_400146 Chr4 30550458 30550457 + OsSN3 183 0.2590 (772/2981) 0 * Os_TE_400147 Os_TE_400145 Chr4 30550069 30550070 - MERMITEJ 1498 0.0004 (1/2821) 0 * Os_TE_400144 Os_TE_400144 Chr4 30550060 30550059 - MERMITEH 1307 0.0003 (1/2975) 0 * Os_TE_400145 Os_TE_400139 Chr4 30549412 30549411 - ORSgTETNOOT02565 240 0.6431 (1921/2987) 0 * * Os_TE_400134 Chr4 30543753 30543754 - COPI2_LTR 4733 0.0013 (4/2964) 0 * * Os_TE_400132 Chr4 30543321 30543038 + F770 284 0.7399 (2208/2984) 1 Intact Os_TE_400131 Os_TE_400131 Chr4 30543038 30543321 - F770 284 0.7353 (2170/2951) 1 Intact Os_TE_400132 Os_TE_400130 Chr4 30541893 30541657 + ORSgTEMT00901780 248 0.7387 (2205/2985) 1 Intact Os_TE_400125 Os_TE_400125 Chr4 30541655 30541893 + ORSgTEMT00901798 232 0.7407 (2217/2993) 1 Intact Os_TE_400130 Os_TE_400123 Chr4 30541462 30541463 + ENSPM6_OS 9815 0.0003 (1/2987) 0 * * Os_TE_400121 Chr4 30540867 30540868 + ORSgTEMT00500476 150 0.1731 (451/2605) 0 * * Os_TE_400118 Chr4 30538669 30538670 + DS-RICE4N 715 0.0013 (4/2998) 0 * * Os_TE_400094 Chr4 30521498 30521499 - STOWAWAY10_OS 259 0.3085 (917/2972) 0 * Os_TE_400093 Os_TE_400093 Chr4 30521497 30521496 + STOWAWAY10_OS 259 0.2650 (749/2826) 0 * Os_TE_400094 Os_TE_400089 Chr4 30517961 30517962 + INDITTO 263 0.2999 (897/2991) 0 * Os_TE_400088 Os_TE_400088 Chr4 30517959 30517958 - INDITTO 263 0.3000 (896/2987) 0 * Os_TE_400089 Os_TE_400086 Chr4 30517354 30517355 - ORSgTEMT00600085 364 0.3907 (1167/2987) 0 * Os_TE_400085 Os_TE_400085 Chr4 30517352 30517351 + CASTAWAY 364 0.3920 (1173/2992) 0 * Os_TE_400086 Os_TE_400077 Chr4 30513999 30514000 + MPING 430 0.0003 (1/2991) 0 * Os_TE_400076 Os_TE_400076 Chr4 30513997 30513996 - MPING 430 0.0003 (1/2993) 0 * Os_TE_400077 Os_TE_400075 Chr4 30513813 30513812 + ORSgTEMT02400014 229 0.0077 (23/2994) 0 * Os_TE_400074 Os_TE_400074 Chr4 30513809 30513810 - ORSgTEMT02400148 214 0.0077 (23/2996) 0 * Os_TE_400075 Os_TE_400061 Chr4 30509124 30509125 - INDITTO 263 0.0003 (1/2924) 0 * Os_TE_400060 Os_TE_400060 Chr4 30509122 30509121 + INDITTO 263 0.0003 (1/2926) 0 * Os_TE_400061 Os_TE_400058 Chr4 30508770 30498618 + HELITRON7_OS 10153 0.1042 (311/2985) 1 Intact Os_TE_400056 Os_TE_400056 Chr4 30498618 30508770 - HELITRON7_OS 10153 0.1019 (304/2984) 0.83 Intact Os_TE_400058 Os_TE_400028 Chr4 30483871 30483527 + OLO24 345 0.1107 (332/2999) 1 Intact Os_TE_400027 Os_TE_400027 Chr4 30483527 30483871 - OLO24 345 0.1114 (334/2999) 1 Intact Os_TE_400028 Os_TE_400025 Chr4 30483290 30483291 + COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_400024 Os_TE_400024 Chr4 30483286 30483285 - COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_400025 Os_TE_400013 Chr4 30477377 30477376 + ORSgTETNOOT01668 244 0.0012 (3/2452) 0 * * Os_TE_400004 Chr4 30474649 30474648 - COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * * Os_TE_400002 Chr4 30468759 30468760 - ORSgTEMT00100582 334 0.3726 (1057/2837) 0 * * Os_TE_399980 Chr4 30462034 30462035 - OSR3_LTR 5201 0.0003 (1/2995) 0 * Os_TE_399979 Os_TE_399979 Chr4 30462030 30462029 + OSR3_LTR 5201 0.0003 (1/2992) 0 * Os_TE_399980 Os_TE_399950 Chr4 30453566 30453565 - NDNA1TNA_OS 334 0.0003 (1/2945) 0 * * Os_TE_399939 Chr4 30452474 30452475 - OSTE15 1168 0.0007 (2/2943) 0 * * Os_TE_399929 Chr4 30446769 30446768 + ORSgTETNOOT00032 218 0.0010 (3/2996) 0 * * Os_TE_399922 Chr4 30434622 30434623 + SEVERIN-2 1952 0.1103 (329/2983) 0 * * Os_TE_399919 Chr4 30433191 30433192 - TNR2A 152 0.0027 (8/2924) 0 * * Os_TE_399895 Chr4 30426045 30426046 + RETRO2_LTR 12874 0.0013 (4/2976) 0 * * Os_TE_399855 Chr4 30405217 30405218 - OLO24 345 0.0007 (2/2995) 0 * Os_TE_399854 Os_TE_399854 Chr4 30405215 30405214 + OLO24 345 0.0007 (2/2997) 0 * Os_TE_399855 Os_TE_399831 Chr4 30396229 30396230 + SETARIA1 1293 0.0021 (5/2347) -1 * * Os_TE_399779 Chr4 30359658 30333395 - SZ-35LTR 3853 0.1594 (470/2949) 1 Intact Os_TE_399767 Os_TE_399767 Chr4 30333395 30359658 + SZ-35LTR 3853 0.1584 (471/2973) 1 Intact Os_TE_399779 Os_TE_399754 Chr4 30326690 30326689 + ORSgTEMT01601934 207 0.0010 (3/2997) 0 * Os_TE_399753 Os_TE_399753 Chr4 30326687 30326688 - ORSgTEMT01601432 239 0.0010 (3/2996) 0 * Os_TE_399754 Os_TE_399748 Chr4 30321037 30321038 + OLO24 345 0.0003 (1/2992) 0 * Os_TE_399747 Os_TE_399747 Chr4 30321035 30321034 - OLO24 345 0.0003 (1/2994) 0 * Os_TE_399748 Os_TE_399746 Chr4 30320915 30320914 - NDNA2TNA_OS 346 0.2015 (594/2948) 0 * * Os_TE_399744 Chr4 30316891 30316892 + COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_399743 Os_TE_399743 Chr4 30316887 30316886 - COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_399744 Os_TE_399737 Chr4 30310353 30310009 + OLO24 345 0.1594 (478/2999) 1 Intact Os_TE_399736 Os_TE_399736 Chr4 30310009 30310353 - OLO24 345 0.1587 (475/2994) 1 Intact Os_TE_399737 Os_TE_399735 Chr4 30309969 30309970 + COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_399734 Os_TE_399734 Chr4 30309965 30309964 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_399735 Os_TE_399733 Chr4 30309684 30309683 + TWIFB1 3737 0.0003 (1/2997) 0 * * Os_TE_399731 Chr4 30309224 30309223 + STOWAWAY51_OS 246 0.0007 (2/2988) 0 * Os_TE_399730 Os_TE_399730 Chr4 30309218 30309219 + ORSgTEMT01601591 242 0.0007 (2/2956) 0 * Os_TE_399731 Os_TE_399726 Chr4 30307900 30307899 + ORSgTEMT01601591 242 0.0010 (3/2993) 0 * * Os_TE_399724 Chr4 30307143 30305946 + RETRO2_LTR 12874 0.1676 (502/2996) 1 Solo_LTR Os_TE_399722 Os_TE_399722 Chr4 30305946 30307143 - RETRO2_LTR 12874 0.1676 (502/2995) 1 Solo_LTR Os_TE_399724 Os_TE_399718 Chr4 30303373 30303374 + ORSgTETNOOT02316 263 0.0090 (27/2998) 0 * Os_TE_399717 Os_TE_399717 Chr4 30303371 30303370 - INDITTO 263 0.0087 (26/2998) 0 * Os_TE_399718 Os_TE_399687 Chr4 30290088 30290087 + STOWAWAY51_OS 246 0.0003 (1/2984) 0 * * Os_TE_399680 Chr4 30281457 30281602 - TNR2A 152 0.3535 (1046/2959) 1 Intact * Os_TE_399666 Chr4 30266836 30266837 - TYPEM 227 0.0007 (2/2999) 0 * Os_TE_399665 Os_TE_399665 Chr4 30266835 30266834 - ORSgTEMT02400179 221 0.0007 (2/2995) 0 * Os_TE_399666 Os_TE_399663 Chr4 30264574 30264575 + ORSiTERTOOT00296 5553 0.0007 (2/2989) 0 * Os_TE_399662 Os_TE_399662 Chr4 30264570 30264569 - SC-3_LTR 5748 0.0007 (2/2983) 0 * Os_TE_399663 Os_TE_399599 Chr4 30239579 30239580 + RIREX_LTR 8828 0.0003 (1/2998) 0 * Os_TE_399598 Os_TE_399598 Chr4 30239575 30239574 - RIREX_LTR 8828 0.0003 (1/2996) 0 * Os_TE_399599 Os_TE_399595 Chr4 30235347 30235346 - MDM1 326 0.0234 (70/2994) 0 * * Os_TE_399578 Chr4 30231962 30231963 - RIREX_LTR 8828 0.0003 (1/2885) 0 * Os_TE_399577 Os_TE_399577 Chr4 30231958 30231957 + RIREX_LTR 8828 0.0007 (2/2898) 0 * Os_TE_399578 Os_TE_399576 Chr4 30231856 30231857 + DASIA-2 1198 0.0040 (12/2975) 0 * * Os_TE_399564 Chr4 30226845 30226846 - OSTE28 298 0.0013 (4/2988) 0 * Os_TE_399563 Os_TE_399563 Chr4 30226837 30226836 + OSTE28 298 0.0013 (4/2988) 0 * Os_TE_399564 Os_TE_399557 Chr4 30219820 30219821 + SNAP-OL3 189 0.0024 (7/2956) 0 * Os_TE_399556 Os_TE_399556 Chr4 30219816 30219815 + SNAP-OL3 189 0.0044 (13/2960) 0 * Os_TE_399557 Os_TE_399537 Chr4 30209604 30209605 - COPIA2-LTR_OS 6433 0.0255 (28/1096) 0 * Os_TE_399536 Os_TE_399536 Chr4 30209600 30209599 + COPIA2-LTR_OS 6433 0.0094 (28/2976) 0 * Os_TE_399537 Os_TE_399529 Chr4 30207655 30207654 - STOWAWAY51_OS 246 0.0004 (1/2838) 0 * * Os_TE_399526 Chr4 30207111 30207110 - GLUTEL1LIKE 273 0.4224 (1232/2917) 0 * * Os_TE_399525 Chr4 30206987 30205480 - SZ-19LTR 1513 0.5779 (1718/2973) 1 Intact Os_TE_399522 Os_TE_399522 Chr4 30205480 30206987 + ATLANTYS-LTR_OS 13740 0.5754 (1705/2963) 1 Solo_LTR Os_TE_399525 Os_TE_399519 Chr4 30203450 30203451 - INDITTO 263 0.1449 (432/2982) 0 * Os_TE_399518 Os_TE_399518 Chr4 30203448 30203447 - ORSgTETNOOT02417 265 0.1402 (416/2968) 0 * Os_TE_399519 Os_TE_399510 Chr4 30202482 30202483 + F524 291 0.4354 (1270/2917) 0 * * Os_TE_399506 Chr4 30201360 30201359 - ORSgTETN00200002 7303 0.0006 (1/1738) 0 * * Os_TE_399505 Chr4 30201237 30201011 - DITTO-2 235 0.5707 (1707/2991) 1 Intact * Os_TE_399503 Chr4 30200354 30200355 + ORSiTERTOOT00381 4988 0.4221 (1265/2997) 0 * Os_TE_399502 Os_TE_399502 Chr4 30200350 30200349 - SC-8_LTR 4951 0.4240 (1269/2993) 0 * Os_TE_399503 Os_TE_399478 Chr4 30193533 30193534 + F770 284 0.0705 (211/2993) 0 * Os_TE_399477 Os_TE_399477 Chr4 30193532 30193531 - F770 284 0.0713 (213/2989) 0 * Os_TE_399478 Os_TE_399466 Chr4 30189591 30188125 - DITAIL 271 0.3629 (1081/2979) 1 Intact Os_TE_399456 Os_TE_399456 Chr4 30188122 30189592 + DITAILA 257 0.3673 (1090/2968) 1 Intact Os_TE_399466 Os_TE_399450 Chr4 30186635 30187064 - CLOUD-3 550 0.4665 (1094/2345) 1 Intact * Os_TE_399449 Chr4 30186232 30186233 + MUDRN5_OS 374 0.0017 (5/2954) 0 * Os_TE_399448 Os_TE_399448 Chr4 30186231 30186230 - ORSgTEMT00700002 381 0.0017 (5/2952) 0 * Os_TE_399449 Os_TE_399443 Chr4 30184374 30184587 - ORSgTETNOOT01219 231 0.3536 (1060/2998) 1 Intact * Os_TE_399442 Chr4 30184307 30184308 - MPING 430 0.0009 (1/1145) 0 * Os_TE_399441 Os_TE_399441 Chr4 30184301 30184300 - STOWAWAY51_OS 246 0.0003 (1/2992) 0 * Os_TE_399442 Os_TE_399440 Chr4 30184300 30184301 + STOWAWAY51_OS 246 0.0003 (1/2991) 0 * * Os_TE_399433 Chr4 30178650 30178651 - HEARTBLEEDING 326 0.0047 (14/2981) 0 * * Os_TE_399432 Chr4 30177359 30177360 - COPI2_LTR 4733 0.1545 (462/2991) 0 * Os_TE_399431 Os_TE_399431 Chr4 30177355 30177354 + COPI2_LTR 4733 0.1545 (462/2990) 0 * Os_TE_399432 Os_TE_399428 Chr4 30176931 30176930 + NDNA2TNA_OS 346 0.0007 (2/2996) 0 * * Os_TE_399417 Chr4 30174803 30174804 - INDITTO 263 0.0003 (1/2986) 0 * Os_TE_399416 Os_TE_399416 Chr4 30174801 30174800 + INDITTO 263 0.0003 (1/2987) 0 * Os_TE_399417 Os_TE_399415 Chr4 30174252 30174253 - INDITTO 263 0.0003 (1/2986) 0 * Os_TE_399414 Os_TE_399414 Chr4 30174250 30174249 + INDITTO 263 0.0003 (1/2976) 0 * Os_TE_399415 Os_TE_399408 Chr4 30171326 30169922 - RPO_OS 1983 0.3562 (1066/2993) 1 Intact * Os_TE_399405 Chr4 30166308 30166309 + RETRO2_LTR 12874 0.0007 (2/2997) 0 * Os_TE_399404 Os_TE_399404 Chr4 30166304 30166303 - RETRO2_LTR 12874 0.0007 (2/2996) 0 * Os_TE_399405 Os_TE_399394 Chr4 30161556 30161557 + MPING 430 0.0007 (2/2985) 0 * Os_TE_399393 Os_TE_399393 Chr4 30161554 30161553 - MPING 430 0.0007 (2/2990) 0 * Os_TE_399394 Os_TE_399379 Chr4 30159729 30159728 + ORSiTERTOOT00074 4935 0.0007 (2/2903) 0 * * Os_TE_399377 Chr4 30159481 30159480 + MuDR3_OS 8604 0.5136 (1491/2903) 0 * * Os_TE_399376 Chr4 30159204 30159205 - OSTE33 1012 0.5304 (1586/2990) 0 * Os_TE_399375 Os_TE_399375 Chr4 30159195 30159194 + OSTE33 1012 0.5237 (1549/2958) 0 * Os_TE_399376 Os_TE_399325 Chr4 30131268 30131269 + ORSiTERTOOT00226 792 0.0068 (20/2950) 0 * Os_TE_399324 Os_TE_399324 Chr4 30131264 30131263 - SZ-22_LTR 4403 0.0071 (21/2945) 0 * Os_TE_399325 Os_TE_399303 Chr4 30122964 30122963 + CACTA-B 1103 0.0007 (2/2993) 0 * Os_TE_399302 Os_TE_399302 Chr4 30122960 30122961 + ORSgTETN00200005 1121 0.0007 (2/2995) 0 * Os_TE_399303 Os_TE_399275 Chr4 30107803 30107804 + COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_399274 Os_TE_399274 Chr4 30107799 30107798 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_399275 Os_TE_399268 Chr4 30104417 30104418 + RETRO1_LTR 8314 0.0475 (138/2907) 0 * Os_TE_399267 Os_TE_399267 Chr4 30104413 30104412 - RETRO1_LTR 8314 0.0451 (131/2907) 0 * Os_TE_399268 Os_TE_399248 Chr4 30091167 30091168 - RETRO2A_LTR 12895 0.0817 (244/2985) 0 * Os_TE_399247 Os_TE_399247 Chr4 30091163 30091162 + RETRO1_LTR 8314 0.0836 (250/2989) 0 * Os_TE_399248 Os_TE_399235 Chr4 30080429 30080428 - STOWAWAY51_OS 246 0.0003 (1/2937) 0 * Os_TE_399234 Os_TE_399234 Chr4 30080423 30080424 + STOWAWAY51_OS 246 0.0003 (1/2974) 0 * Os_TE_399235 Os_TE_399228 Chr4 30076935 30076936 - AMYLTP 383 0.0007 (2/2995) 0 * Os_TE_399227 Os_TE_399227 Chr4 30076927 30076926 + AMYLTP 383 0.0007 (2/2997) 0 * Os_TE_399228 Os_TE_399226 Chr4 30066190 30069885 - LINE-4_OS 3662 0.2894 (866/2992) 1 Intact * Os_TE_399215 Chr4 30060932 30060933 - AMYLTP 383 0.0010 (3/2993) 0 * Os_TE_399214 Os_TE_399214 Chr4 30060924 30060923 + AMYLTP 383 0.0007 (2/2993) 0 * Os_TE_399215 Os_TE_399210 Chr4 30059826 30059825 + INDITTO 263 0.0715 (213/2978) 0 * Os_TE_399209 Os_TE_399209 Chr4 30059823 30059824 - INDITTO 263 0.0725 (216/2981) 0 * Os_TE_399210 Os_TE_399193 Chr4 30042549 30042548 + TRUNCATOR2_LTR 2904 0.0020 (6/2997) 0 * * Os_TE_399178 Chr4 30038983 30038984 - XIKE 594 0.0013 (4/2968) 0 * Os_TE_399177 Os_TE_399177 Chr4 30038975 30038974 + XIKE 594 0.0017 (5/2970) 0 * Os_TE_399178 Os_TE_399161 Chr4 30033204 30033205 + COPIA2-LTR_OS 6433 0.0007 (2/2998) 0 * * Os_TE_399149 Chr4 30025309 30025308 - AMYLTP 383 0.0017 (5/2989) 0 * * Os_TE_399120 Chr4 30004940 30004941 - RIREX_LTR 8828 0.0004 (1/2807) 0 * Os_TE_399119 Os_TE_399119 Chr4 30004936 30004935 + RIREX_LTR 8828 0.0004 (1/2808) 0 * Os_TE_399120 Os_TE_399110 Chr4 30001180 30001179 - STOWAWAY51_OS 246 0.0003 (1/2989) 0 * Os_TE_399109 Os_TE_399109 Chr4 30001174 30001175 + STOWAWAY51_OS 246 0.0003 (1/2986) 0 * Os_TE_399110 Os_TE_399099 Chr4 29996848 29996847 + ORSgTEMT01601591 242 0.0003 (1/2944) 0 * * Os_TE_399097 Chr4 29996750 29996751 + COPIA2-LTR_OS 6433 0.0004 (1/2746) 0 * Os_TE_399096 Os_TE_399096 Chr4 29996746 29996745 - COPIA2-LTR_OS 6433 0.0004 (1/2769) 0 * Os_TE_399097 Os_TE_399084 Chr4 29992546 29992547 + ORSgTEMT01601591 242 0.0003 (1/2994) 0 * * Os_TE_399054 Chr4 29979766 29979765 - ORSgTERT00201216 11284 0.0003 (1/2995) 0 * * Os_TE_399041 Chr4 29968539 29968540 - NDNA1TNA_OS 334 0.0003 (1/2997) 0 * Os_TE_399040 Os_TE_399040 Chr4 29968537 29968536 + NDNA1TNA_OS 334 0.0003 (1/2997) 0 * Os_TE_399041 Os_TE_399033 Chr4 29963974 29963973 - HARB-1_OS 5166 0.0003 (1/2908) 0 * * Os_TE_399029 Chr4 29962474 29962475 - ORSgTETNOOT02497 262 0.0253 (76/2999) 0 * Os_TE_399028 Os_TE_399028 Chr4 29962472 29962471 - INDITTO 263 0.0250 (75/2998) 0 * Os_TE_399029 Os_TE_399025 Chr4 29957700 29957701 + RIREX_LTR 8828 0.0007 (2/2990) 0 * Os_TE_399024 Os_TE_399024 Chr4 29957696 29957695 - RIREX_LTR 8828 0.0007 (2/2988) 0 * Os_TE_399025 Os_TE_399004 Chr4 29944787 29944786 - FOCUS 257 0.0007 (2/2982) 0 * * Os_TE_398965 Chr4 29922798 29922797 + NDNA1TNA_OS 334 0.0607 (182/2997) 0 * Os_TE_398964 Os_TE_398964 Chr4 29922791 29922792 - NDNA1TNA_OS 334 0.0607 (182/2996) 0 * Os_TE_398965 Os_TE_398959 Chr4 29921435 29921436 - RIREX_LTR 8828 0.0003 (1/2999) 0 * Os_TE_398958 Os_TE_398958 Chr4 29921431 29921430 + RIREX_LTR 8828 0.0003 (1/2999) 0 * Os_TE_398959 Os_TE_398956 Chr4 29920151 29920152 + COPI2_LTR 4733 0.0003 (1/2992) 0 * * Os_TE_398954 Chr4 29919631 29897733 + RETRO1_LTR 8314 0.1961 (580/2957) 1 Intact Os_TE_398947 Os_TE_398947 Chr4 29897733 29919631 - RETRO2A_LTR 12895 0.1931 (569/2947) 1 Intact Os_TE_398954 Os_TE_398933 Chr4 29885810 29885811 + SC-8_LTR 4951 0.0003 (1/2995) 0 * Os_TE_398932 Os_TE_398932 Chr4 29885806 29885805 - SC-8_LTR 4951 0.0003 (1/2993) 0 * Os_TE_398933 Os_TE_398926 Chr4 29880087 29879950 + OSTE18 129 0.2315 (693/2994) 1 Intact Os_TE_398924 Os_TE_398924 Chr4 29879950 29880087 - OSTE18 129 0.2318 (690/2977) 1 Intact Os_TE_398926 Os_TE_398923 Chr4 29879919 29879918 - STOWAWAY45_OS 266 0.0683 (194/2840) 0 * Os_TE_398922 Os_TE_398922 Chr4 29879916 29879917 + STOWAWAY45_OS 266 0.0670 (200/2987) 0 * Os_TE_398923 Os_TE_398878 Chr4 29857645 29857644 - STOWAWAY51_OS 246 0.0003 (1/2985) 0 * * Os_TE_398817 Chr4 29835688 29835689 - COPIA1-LTR_OS 9292 0.0018 (4/2233) 0 * * Os_TE_398809 Chr4 29830272 29830273 + SEVERIN-2 1952 0.0003 (1/2989) 0 * * Os_TE_398791 Chr4 29822577 29822578 + RETROSAT4_LTR 13504 0.1529 (455/2975) 0 * Os_TE_398790 Os_TE_398790 Chr4 29822573 29822572 - SZ-35LTR 3853 0.1553 (464/2987) 0.07 * Os_TE_398791 Os_TE_398788 Chr4 29821464 29821463 - SZ-62LTR 3649 0.0007 (2/2994) 0 * * Os_TE_398768 Chr4 29801758 29801759 - RIRE5-LTR_OS 6427 0.2102 (629/2993) 0 * Os_TE_398767 Os_TE_398767 Chr4 29801753 29801752 + RIRE5-LTR_OS 6427 0.1775 (517/2913) 0 * Os_TE_398768 Os_TE_398757 Chr4 29792949 29792948 - COPIA2-LTR_OS 6433 0.0020 (5/2464) 0 * * Os_TE_398756 Chr4 29792888 29792889 + ORSiTERTOOT00441 4741 0.0004 (1/2471) 0 * Os_TE_398755 Os_TE_398755 Chr4 29792884 29792883 - ORSiTERTOOT00441 4741 0.0004 (1/2468) 0 * Os_TE_398756 Os_TE_398745 Chr4 29787205 29787206 + RETROSAT2LTR 12796 0.0558 (150/2689) 0 * * Os_TE_398725 Chr4 29776880 29776881 - RETROSAT2LTR 12796 0.0100 (30/2998) 0 * * Os_TE_398721 Chr4 29775933 29775934 + RIRE2_LTR 11306 0.0003 (1/2961) 0 * Os_TE_398720 Os_TE_398720 Chr4 29775929 29775928 - RIRE2_LTR 11306 0.0003 (1/2965) 0 * Os_TE_398721 Os_TE_398719 Chr4 29775384 29775383 - NDNA2TNA_OS 346 0.0007 (2/2940) 0 * * Os_TE_398710 Chr4 29769992 29764490 - SC-3_LTR 5748 0.1885 (565/2998) 1 Intact Os_TE_398701 Os_TE_398701 Chr4 29764342 29769992 + ORSiTERTOOT00296 5553 0.1878 (563/2998) 1 Intact Os_TE_398710 Os_TE_398675 Chr4 29751503 29751504 + ORSgTETNOOT01998 254 0.1576 (463/2937) 0 * * Os_TE_398665 Chr4 29747334 29747335 - SC-8_LTR 4951 0.0003 (1/2993) 0 * Os_TE_398664 Os_TE_398664 Chr4 29747330 29747329 + SC-8_LTR 4951 0.0003 (1/2993) 0 * Os_TE_398665 Os_TE_398656 Chr4 29738350 29738349 + STOWAWAY51_OS 246 0.0007 (2/2998) 0 * Os_TE_398655 Os_TE_398655 Chr4 29738344 29738345 - STOWAWAY51_OS 246 0.0007 (2/2997) 0 * Os_TE_398656 Os_TE_398611 Chr4 29715348 29715349 - RIREX_LTR 8828 0.0100 (30/2995) 0 * Os_TE_398610 Os_TE_398610 Chr4 29715344 29715343 + RIREX_LTR 8828 0.0100 (30/2996) 0 * Os_TE_398611 Os_TE_398566 Chr4 29684957 29684956 - ORSiTETNOOT00216 3569 0.0011 (3/2758) 0 * * Os_TE_398535 Chr4 29670246 29666759 - HATOS1 3488 0.1667 (497/2982) 1 Intact Os_TE_398534 Os_TE_398534 Chr4 29666759 29670246 + HATOS1 3488 0.1607 (477/2968) 1 Intact Os_TE_398535 Os_TE_398511 Chr4 29662285 29662286 + COPIA2-LTR_OS 6433 0.0657 (197/2999) 0 * Os_TE_398510 Os_TE_398510 Chr4 29662281 29662280 - COPIA2-LTR_OS 6433 0.0654 (196/2999) 0 * Os_TE_398511 Os_TE_398504 Chr4 29656885 29656886 - COPI2_LTR 4733 0.0010 (3/2993) 0 * Os_TE_398503 Os_TE_398503 Chr4 29656881 29656880 + COPI2_LTR 4733 0.0010 (3/2994) 0 * Os_TE_398504 Os_TE_398475 Chr4 29635072 29635073 - OSTE15 1168 0.5333 (1578/2959) 0 * * Os_TE_398458 Chr4 29625150 29625151 - ORSiTETNOOT00141 607 0.0003 (1/2986) 0 * * Os_TE_398457 Chr4 29624017 29624018 + ORSgTETNOOT00908 242 0.0628 (188/2992) 0 * * Os_TE_398439 Chr4 29620303 29620302 - STOWAWAY51_OS 246 0.0003 (1/2990) 0 * * Os_TE_398430 Chr4 29619604 29619605 - RIRE2_LTR 11306 0.4258 (1254/2945) 0 * Os_TE_398429 Os_TE_398429 Chr4 29619600 29619599 + RIRE2_LTR 11306 0.4314 (1282/2972) 0 * Os_TE_398430 Os_TE_398420 Chr4 29616244 29616245 - RIREX_LTR 8828 0.0013 (4/2989) 0 * Os_TE_398419 Os_TE_398419 Chr4 29616240 29616239 + RIREX_LTR 8828 0.0013 (4/2986) 0 * Os_TE_398420 Os_TE_398389 Chr4 29609544 29609543 - STOWAWAY44_OS 240 0.0003 (1/2994) 0 * Os_TE_398388 Os_TE_398388 Chr4 29609541 29609542 + STOWAWAY44_OS 240 0.0003 (1/2994) 0 * Os_TE_398389 Os_TE_398374 Chr4 29604239 29604238 + ORSgTEMT01601591 242 0.0003 (1/2998) 0 * Os_TE_398373 Os_TE_398373 Chr4 29604233 29604234 + STOWAWAY51_OS 246 0.0003 (1/2998) 0 * Os_TE_398374 Os_TE_398364 Chr4 29601380 29594973 - ORSgTERT00100363 6446 0.3980 (1172/2945) 1 Intact Os_TE_398358 Os_TE_398358 Chr4 29594973 29601386 - COPIA2-LTR_OS 6433 0.4034 (1205/2987) 1 Intact Os_TE_398364 Os_TE_398351 Chr4 29594117 29594118 + STOWAWAY51_OS 246 0.0007 (2/2993) 0 * * Os_TE_398350 Chr4 29593847 29593848 - ORSgTETNOOT00053 263 0.0421 (126/2995) 0 * Os_TE_398349 Os_TE_398349 Chr4 29593845 29593844 + ORSgTETNOOT00221 261 0.0408 (122/2990) 0 * Os_TE_398350 Os_TE_398348 Chr4 29593706 29593707 + MPING 430 0.0007 (2/2999) 0 * Os_TE_398347 Os_TE_398347 Chr4 29593704 29593703 - MPING 430 0.0007 (2/2998) 0 * Os_TE_398348 Os_TE_398346 Chr4 29593101 29592880 + ORSgTEMT02400158 222 0.3991 (1194/2992) 1 Intact Os_TE_398345 Os_TE_398345 Chr4 29592879 29593098 - ORSgTEMT02400179 221 0.3987 (1189/2982) 1 Intact Os_TE_398346 Os_TE_398335 Chr4 29590550 29590551 - MPING 430 0.0003 (1/2943) 0 * * Os_TE_398328 Chr4 29586862 29587054 - ORSgTEMT02000047 197 0.4045 (1133/2801) 1 Intact * Os_TE_398316 Chr4 29579532 29579533 + SC-8_LTR 4951 0.0003 (1/2995) 0 * Os_TE_398315 Os_TE_398315 Chr4 29579528 29579527 - SC-8_LTR 4951 0.0003 (1/2993) 0 * Os_TE_398316 Os_TE_398314 Chr4 29578199 29578198 + MERMITEB 1610 0.0003 (1/2993) 0 * * Os_TE_398311 Chr4 29575443 29575442 + ORSgTETNOOT01668 244 0.0563 (168/2986) 0 * * Os_TE_398309 Chr4 29570785 29570784 + ORSgTETNOOT01219 231 0.0584 (175/2995) 0 * * Os_TE_398296 Chr4 29563885 29563886 + STOWAWAY51_OS 246 0.0003 (1/2970) 0 * * Os_TE_398295 Chr4 29563847 29563846 + STOWAWAY51_OS 246 0.0013 (4/2979) 0 * Os_TE_398294 Os_TE_398294 Chr4 29563841 29563842 - STOWAWAY51_OS 246 0.0017 (5/2983) 0 * Os_TE_398295 Os_TE_398252 Chr4 29538704 29538703 - ORSgTEMT02000041 194 0.0988 (296/2997) 0 * * Os_TE_398240 Chr4 29528679 29528680 - INDITTO 263 0.5804 (1722/2967) 0 * Os_TE_398239 Os_TE_398239 Chr4 29528678 29528677 + INDITTO 263 0.5865 (1753/2989) 0 * Os_TE_398240 Os_TE_398210 Chr4 29514864 29514863 - MuDR4_OS 7610 0.0451 (135/2995) 0 * * Os_TE_398209 Chr4 29514829 29514830 + RIREX_LTR 8828 0.0003 (1/2997) 0 * Os_TE_398208 Os_TE_398208 Chr4 29514825 29514824 - RIREX_LTR 8828 0.0007 (2/2998) 0 * Os_TE_398209 Os_TE_398194 Chr4 29507492 29507491 - ORSiTETNOOT00216 3569 0.0959 (287/2993) 0 * * Os_TE_398176 Chr4 29494197 29494198 + COPIA2-LTR_OS 6433 0.0017 (5/2983) 0 * Os_TE_398175 Os_TE_398175 Chr4 29494193 29494192 - COPIA2-LTR_OS 6433 0.0017 (5/2984) 0 * Os_TE_398176 Os_TE_398174 Chr4 29493814 29493815 + TWIFB1 3737 0.0003 (1/2994) 0 * * Os_TE_398173 Chr4 29493205 29493206 - MPING 430 0.0023 (7/2998) 0 * Os_TE_398172 Os_TE_398172 Chr4 29493203 29493202 + MPING 430 0.0023 (7/2998) 0 * Os_TE_398173 Os_TE_398154 Chr4 29488757 29488756 + STOWAWAY51_OS 246 0.0003 (1/2996) 0 * * Os_TE_398147 Chr4 29481129 29481130 - RIRE3A_LTR 10580 0.0445 (133/2992) 0 * Os_TE_398146 Os_TE_398146 Chr4 29481125 29481124 + ORSiTERTOOT00027 10853 0.0438 (131/2988) 0 * Os_TE_398147 Os_TE_398138 Chr4 29467417 29467416 + STOWAWAY51_OS 246 0.0318 (95/2987) 0 * Os_TE_398137 Os_TE_398137 Chr4 29467411 29467412 + ORSgTEMT01601591 242 0.0322 (96/2984) 0 * Os_TE_398138 Os_TE_398124 Chr4 29464416 29464417 - STOWAWAY11_OS 292 0.0011 (3/2685) -1 * * Os_TE_398107 Chr4 29452994 29452995 - MuDR3_OS 8604 0.0508 (152/2995) 0 * * Os_TE_398105 Chr4 29448180 29448179 + STOWAWAY45_OS 266 0.0017 (5/2986) 0 * * Os_TE_398099 Chr4 29447431 29447432 + ORSgTEMT00502101 146 0.0017 (5/2985) 0 * * Os_TE_398097 Chr4 29446158 29442247 + RETROSAT4_LTR 13504 0.3588 (1047/2918) 1 Solo_LTR Os_TE_398095 Os_TE_398095 Chr4 29442247 29446158 - SZ-35LTR 3853 0.3800 (1137/2992) 1 Intact Os_TE_398097 Os_TE_398094 Chr4 29442067 29442068 - STOWAWAY44_OS 240 0.0017 (5/2986) 0 * * Os_TE_398085 Chr4 29437017 29436755 - INDITTO 263 0.3769 (1124/2982) 1 Intact * Os_TE_398072 Chr4 29434937 29434938 - COPI2_LTR 4733 0.0042 (5/1189) 0 * Os_TE_398071 Os_TE_398071 Chr4 29434933 29434932 + COPI2_LTR 4733 0.0010 (3/2981) 0 * Os_TE_398072 Os_TE_398063 Chr4 29418687 29423869 - ORSiTERTOOT00327 5186 0.6041 (1155/1912) 1 Intact * Os_TE_398062 Chr4 29418255 29418256 - COPIA2-LTR_OS 6433 0.0036 (7/1955) 0 * * Os_TE_398060 Chr4 29414956 29414955 - SZ-54_LTR 5203 0.0003 (1/2993) 0 * * Os_TE_398054 Chr4 29411215 29411214 + COPI2_LTR 4733 0.0008 (1/1249) 0 * * Os_TE_398048 Chr4 29405001 29405002 - SZ-55_LTR 10318 0.0003 (1/2995) 0 * * Os_TE_398038 Chr4 29402942 29402943 + RETRO2_LTR 12874 0.0010 (3/2938) 0 * * Os_TE_398034 Chr4 29401104 29401103 - KIDDOB 280 0.0007 (2/2995) 0 * * Os_TE_398023 Chr4 29398979 29398980 + COPI2_LTR 4733 0.0003 (1/2979) 0 * Os_TE_398022 Os_TE_398022 Chr4 29398975 29398974 - COPI2_LTR 4733 0.0003 (1/2971) 0 * Os_TE_398023 Os_TE_398019 Chr4 29398604 29398605 + COPI2_LTR 4733 0.0003 (1/2950) 0 * Os_TE_398018 Os_TE_398018 Chr4 29398600 29398599 - COPI2_LTR 4733 0.0003 (1/2926) 0 * Os_TE_398019 Os_TE_398016 Chr4 29396740 29396741 - ORSgTEMT06100010 269 0.0457 (137/2998) 0 * Os_TE_398015 Os_TE_398015 Chr4 29396738 29396737 + ORSgTEMT06100010 269 0.0460 (138/2999) 0 * Os_TE_398016 Os_TE_398014 Chr4 29396374 29396375 + MPING 430 0.0104 (31/2994) 0 * Os_TE_398013 Os_TE_398013 Chr4 29396372 29396371 - MPING 430 0.0100 (30/2993) 0 * Os_TE_398014 Os_TE_397998 Chr4 29388197 29388198 + RIREX_LTR 8828 0.0024 (7/2961) 0 * Os_TE_397997 Os_TE_397997 Chr4 29388193 29388192 - RIREX_LTR 8828 0.0024 (7/2968) 0 * Os_TE_397998 Os_TE_397989 Chr4 29383545 29383544 + STOWAWAY51_OS 246 0.0003 (1/2985) 0 * Os_TE_397988 Os_TE_397988 Chr4 29383539 29383540 + ORSgTEMT01601591 242 0.0003 (1/2983) 0 * Os_TE_397989 Os_TE_397987 Chr4 29383164 29383165 + RIREX_LTR 8828 0.0737 (220/2986) 0 * Os_TE_397986 Os_TE_397986 Chr4 29383160 29383159 - RIREX_LTR 8828 0.0732 (218/2980) 0 * Os_TE_397987 Os_TE_397955 Chr4 29362281 29362282 + RIREX_LTR 8828 0.0003 (1/2963) 0 * Os_TE_397954 Os_TE_397954 Chr4 29362277 29362276 - RIREX_LTR 8828 0.0003 (1/2965) 0 * Os_TE_397955 Os_TE_397945 Chr4 29360755 29360754 - OSLINE1-2 7128 0.2223 (665/2992) 0 * * Os_TE_397913 Chr4 29345308 29345309 + ORSiTERTOOT00226 792 0.0003 (1/2996) 0 * Os_TE_397912 Os_TE_397912 Chr4 29345304 29345303 - SZ-22_LTR 4403 0.0003 (1/2997) 0 * Os_TE_397913 Os_TE_397894 Chr4 29343113 29342750 - ORSgTEMT00600085 364 0.4802 (1430/2978) 1 Intact Os_TE_397889 Os_TE_397889 Chr4 29342751 29343113 - ORSgTEMT00600484 344 0.4820 (1443/2994) 1 Intact Os_TE_397894 Os_TE_397887 Chr4 29339991 29339990 - RIREX_LTR 8828 0.0003 (1/2997) 0 * * Os_TE_397886 Chr4 29339346 29339453 - SINE6_OS 119 0.4499 (1347/2994) 1 Intact * Os_TE_397873 Chr4 29336301 29336302 + RETRO2_LTR 12874 0.4205 (1240/2949) 0 * * Os_TE_397871 Chr4 29336199 29336200 + RETRO2A_LTR 12895 0.1044 (309/2959) 0 * Os_TE_397870 Os_TE_397870 Chr4 29336195 29336194 - RETRO2_LTR 12874 0.1057 (312/2952) 0 * Os_TE_397871 Os_TE_397866 Chr4 29334615 29334616 - SC-8_LTR 4951 0.0003 (1/2977) 0 * Os_TE_397865 Os_TE_397865 Chr4 29334611 29334610 + SC-8_LTR 4951 0.0003 (1/2985) 0 * Os_TE_397866 Os_TE_397757 Chr4 29300720 29300721 - STOWAWAY51_OS 246 0.0007 (2/2992) 0 * * Os_TE_397756 Chr4 29300313 29300314 + MPING 430 0.0013 (4/2997) 0 * Os_TE_397755 Os_TE_397755 Chr4 29300311 29300310 - MPING 430 0.0013 (4/2996) 0 * Os_TE_397756 Os_TE_397748 Chr4 29294172 29294173 - ORSgTEMT04200023 393 0.5107 (1523/2982) 0 * * Os_TE_397745 Chr4 29293375 29293374 - ORSgTEMT02400246 177 0.1748 (521/2981) 0 * Os_TE_397744 Os_TE_397744 Chr4 29293371 29293372 - ORSgTEMT02400092 225 0.1767 (527/2983) 0 * Os_TE_397745 Os_TE_397698 Chr4 29277299 29277300 - INDITTO 263 0.0010 (3/2895) 0 * Os_TE_397697 Os_TE_397697 Chr4 29277297 29277296 + INDITTO 263 0.0010 (3/2888) 0 * Os_TE_397698 Os_TE_397696 Chr4 29277269 29277270 - MPING 430 0.0003 (1/2972) 0 * Os_TE_397695 Os_TE_397695 Chr4 29277267 29277266 + MPING 430 0.0003 (1/2971) 0 * Os_TE_397696 Os_TE_397683 Chr4 29273123 29266814 - OSTONOR1_LTR 6440 0.3824 (935/2445) 1 Intact Os_TE_397680 Os_TE_397680 Chr4 29266814 29273123 + OSTONOR1_LTR 6440 0.3913 (963/2461) 1 Intact Os_TE_397683 Os_TE_397665 Chr4 29264161 29255320 + ENSPM4_OS 11610 0.3114 (921/2958) 1 Intact Os_TE_397662 Os_TE_397662 Chr4 29255320 29264161 - ENSPM4_OS 11610 0.3202 (957/2989) 1 Intact Os_TE_397665 Os_TE_397661 Chr4 29254817 29254472 + NDNA2TNA_OS 346 0.8169 (2432/2977) 1 Intact Os_TE_397657 Os_TE_397657 Chr4 29254472 29254817 - NDNA2TNA_OS 346 0.8188 (2445/2986) 1 Intact Os_TE_397661 Os_TE_397652 Chr4 29252883 29252884 + ORSgTEMT01602181 239 0.0010 (3/2998) 0 * * Os_TE_397639 Chr4 29245966 29245967 - RIREX_LTR 8828 0.0003 (1/2991) 0 * Os_TE_397638 Os_TE_397638 Chr4 29245962 29245961 + RIREX_LTR 8828 0.0003 (1/2991) 0 * Os_TE_397639 Os_TE_397619 Chr4 29239932 29239933 - MERMITEB 1610 0.0007 (2/2996) 0 * * Os_TE_397559 Chr4 29212495 29212149 + NDNA2TNA_OS 346 0.4162 (1241/2982) 1 Intact Os_TE_397555 Os_TE_397555 Chr4 29212149 29212495 - NDNA2TNA_OS 346 0.4211 (1260/2992) 0.94 Intact Os_TE_397559 Os_TE_397554 Chr4 29210449 29210450 - RIREX_LTR 8828 0.0003 (1/2996) 0 * Os_TE_397553 Os_TE_397553 Chr4 29210445 29210444 + RIREX_LTR 8828 0.0003 (1/2997) 0 * Os_TE_397554 Os_TE_397539 Chr4 29206784 29206785 + MPING 430 0.0003 (1/2998) 0 * Os_TE_397538 Os_TE_397538 Chr4 29206782 29206781 - MPING 430 0.0003 (1/2998) 0 * Os_TE_397539 Os_TE_397532 Chr4 29204659 29204660 + COPIA2-LTR_OS 6433 0.0003 (1/2986) 0 * Os_TE_397531 Os_TE_397531 Chr4 29204655 29204654 - COPIA2-LTR_OS 6433 0.0003 (1/2983) 0 * Os_TE_397532 Os_TE_397530 Chr4 29204184 29204183 + MERMITEB 1610 0.0021 (6/2922) 0 * * Os_TE_397464 Chr4 29162147 29162148 + COPI2_LTR 4733 0.0256 (75/2935) 0 * Os_TE_397463 Os_TE_397463 Chr4 29162143 29162142 - COPI2_LTR 4733 0.0272 (80/2937) 0 * Os_TE_397464 Os_TE_397451 Chr4 29159159 29159160 + AMYLTP 383 0.0010 (3/2997) 0 * Os_TE_397450 Os_TE_397450 Chr4 29159150 29159149 - AMYLTP 383 0.0013 (4/2998) 0 * Os_TE_397451 Os_TE_397449 Chr4 29158896 29158897 - TELIA 141 0.0003 (1/2994) 0 * * Os_TE_397437 Chr4 29150702 29150703 + ORSgTEMT00600272 361 0.0010 (3/2981) 0 * Os_TE_397436 Os_TE_397436 Chr4 29150700 29150699 - ORSgTEMT00600524 364 0.0010 (3/2986) 0 * Os_TE_397437 Os_TE_397416 Chr4 29137672 29137671 - ORSgTEMT02400092 225 0.4666 (1392/2983) 0 * * Os_TE_397366 Chr4 29122276 29122275 - ORSiTERTOOT00441 4741 0.0003 (1/2979) 0 * * Os_TE_397365 Chr4 29121215 29121216 + MPING 430 0.0010 (3/2873) 0 * Os_TE_397364 Os_TE_397364 Chr4 29121213 29121212 - MPING 430 0.0010 (3/2997) 0 * Os_TE_397365 Os_TE_397348 Chr4 29115509 29115510 - ORSgTETNOOT02565 240 0.5234 (1566/2992) 0 * * Os_TE_397347 Chr4 29114959 29114958 - STOWAWAY51_OS 246 0.0003 (1/2980) 0 * Os_TE_397346 Os_TE_397346 Chr4 29114956 29114957 - STOWAWAY51_OS 246 0.0003 (1/2982) 0 * Os_TE_397347 Os_TE_397342 Chr4 29105866 29105867 + AMYLTP 383 0.1839 (547/2974) 0 * * Os_TE_397340 Chr4 29105344 29105345 - OSTE17 734 0.5199 (1543/2968) 0 * Os_TE_397339 Os_TE_397339 Chr4 29105337 29105336 - OSTE17 734 0.5182 (1535/2962) 0 * Os_TE_397340 Os_TE_397338 Chr4 29105284 29105285 + COPIA2-LTR_OS 6433 0.0003 (1/2946) 0 * Os_TE_397337 Os_TE_397337 Chr4 29105280 29105279 - COPIA2-LTR_OS 6433 0.0003 (1/2950) 0 * Os_TE_397338 Os_TE_397327 Chr4 29098469 29098468 + STOWAWAY21_OS 243 0.5489 (1560/2842) 0 * * Os_TE_397326 Chr4 29098468 29098469 + ORSgTEMT01601122 212 0.5065 (1252/2472) 0 * * Os_TE_397325 Chr4 29098463 29098462 + OSTE33 1012 0.4204 (565/1344) 0 * * Os_TE_397293 Chr4 29090636 29090637 + ORSiTERTOOT00296 5553 0.0003 (1/2994) 0 * Os_TE_397292 Os_TE_397292 Chr4 29090632 29090631 - SC-3_LTR 5748 0.0003 (1/2995) 0 * Os_TE_397293 Os_TE_397224 Chr4 29055726 29055725 - GYPSY-A_LTR 8951 0.0637 (191/2998) 0 * * Os_TE_397223 Chr4 29055640 29055641 + RIREX_LTR 8828 0.0287 (85/2965) 0 * * Os_TE_397184 Chr4 29045616 29045617 + ORSiTERTOOT00296 5553 0.0010 (3/2992) 0 * Os_TE_397183 Os_TE_397183 Chr4 29045612 29045611 - SC-3_LTR 5748 0.0010 (3/2988) 0 * Os_TE_397184 Os_TE_397182 Chr4 29045284 29045285 + RETROSAT2LTR 12796 0.4187 (1215/2902) 0 * Os_TE_397181 Os_TE_397181 Chr4 29045282 29045281 - RETROSAT2LTR 12796 0.4382 (1304/2976) 0 * Os_TE_397182 Os_TE_397157 Chr4 29039332 29039331 - RETRO2_LTR 12874 0.0024 (7/2946) 0 * * Os_TE_397151 Chr4 29035817 29035818 + ORSiTERT00100079 4922 0.0288 (86/2988) 0 * Os_TE_397150 Os_TE_397150 Chr4 29035813 29035812 - ORSiTERT00100079 4922 0.0281 (84/2987) 0 * Os_TE_397151 Os_TE_397124 Chr4 29030042 29030041 - SPMLIKE 10989 0.2674 (792/2962) 0 * * Os_TE_397105 Chr4 29025165 28990755 + RIRE3_LTR 12054 0.4730 (1392/2943) 1 Intact * Os_TE_397050 Chr4 29001171 29001170 + ORSiTERTOOT00027 10853 0.0018 (5/2737) 0 * * Os_TE_396960 Chr4 28963151 28962957 - ORSgTEMT02400246 177 0.7811 (1470/1882) 1 Intact * Os_TE_396880 Chr4 28918814 28918815 - RETROSAT2LTR 12796 0.6090 (1299/2133) 0 * * Os_TE_396857 Chr4 28908942 28908943 - STOWAWAY51_OS 246 0.0003 (1/2999) 0 * * Os_TE_396856 Chr4 28908764 28908765 + MPING 430 0.0003 (1/2997) 0 * Os_TE_396855 Os_TE_396855 Chr4 28908762 28908761 - MPING 430 0.0003 (1/2997) 0 * Os_TE_396856 Os_TE_396853 Chr4 28907469 28907468 - RPO_OS 1983 0.0014 (4/2946) 0 * Os_TE_396852 Os_TE_396852 Chr4 28907468 28907469 + RPO_OS 1983 0.0017 (5/2953) 0 * Os_TE_396853 Os_TE_396841 Chr4 28903242 28903243 + HARB-1_OS 5166 0.0017 (5/2993) 0 * Os_TE_396840 Os_TE_396840 Chr4 28903240 28903239 - HARB-1_OS 5166 0.0017 (5/2992) 0 * Os_TE_396841 Os_TE_396824 Chr4 28894835 28894836 - COPIA2-LTR_OS 6433 0.0003 (1/2910) 0 * * Os_TE_396806 Chr4 28883474 28884517 + OSTE33 1012 0.4838 (1447/2991) 1 Intact * Os_TE_396793 Chr4 28870199 28870200 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_396792 Os_TE_396792 Chr4 28870195 28870194 - COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_396793 Os_TE_396695 Chr4 28831080 28831081 - SZ-62LTR 3649 0.0287 (86/2997) 0 * Os_TE_396694 Os_TE_396694 Chr4 28831076 28831075 + SZ-62LTR 3649 0.0277 (83/2993) 0 * Os_TE_396695 Os_TE_396687 Chr4 28826973 28826974 + COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_396686 Os_TE_396686 Chr4 28826969 28826968 - COPI2_LTR 4733 0.0003 (1/2988) 0 * Os_TE_396687 Os_TE_396681 Chr4 28822675 28822676 + INDITTO 263 0.0007 (2/2974) 0 * * Os_TE_396673 Chr4 28822324 28822325 + MPING 430 0.0007 (2/2984) 0 * Os_TE_396672 Os_TE_396672 Chr4 28822322 28822321 - MPING 430 0.0010 (3/2986) 0 * Os_TE_396673 Os_TE_396671 Chr4 28822317 28822318 + MPING 430 0.0010 (3/2988) 0 * Os_TE_396670 Os_TE_396670 Chr4 28822315 28822314 - MPING 430 0.0003 (1/2986) 0 * Os_TE_396671 Os_TE_396668 Chr4 28819796 28819797 + RETROSAT4_LTR 13504 0.0017 (5/2890) 0 * Os_TE_396667 Os_TE_396667 Chr4 28819792 28819791 - SZ-35LTR 3853 0.0021 (6/2899) 0 * Os_TE_396668 Os_TE_396665 Chr4 28818866 28818867 + ORSgTETNOOT00908 242 0.0007 (2/2986) 0 * Os_TE_396664 Os_TE_396664 Chr4 28818864 28818863 - ORSgTETNOOT00908 242 0.0007 (2/2985) 0 * Os_TE_396665 Os_TE_396656 Chr4 28816113 28816114 - RIREX_LTR 8828 0.0003 (1/2916) 0 * Os_TE_396655 Os_TE_396655 Chr4 28816109 28816108 + RIREX_LTR 8828 0.0003 (1/2898) 0 * Os_TE_396656 Os_TE_396614 Chr4 28797830 28797831 - SZ-22_LTR 4403 0.0003 (1/2975) 0 * Os_TE_396613 Os_TE_396613 Chr4 28797826 28797825 + ORSiTERTOOT00226 792 0.0003 (1/2975) 0 * Os_TE_396614 Os_TE_396612 Chr4 28797511 28797512 + RIREX_LTR 8828 0.0003 (1/2953) 0 * Os_TE_396611 Os_TE_396611 Chr4 28797507 28797506 - RIREX_LTR 8828 0.0007 (2/2949) 0 * Os_TE_396612 Os_TE_396606 Chr4 28795736 28794481 - RETRO2_LTR 12874 0.4674 (1396/2987) 1 Solo_LTR Os_TE_396604 Os_TE_396604 Chr4 28794481 28795736 + ORSgTERTOOT00009 12852 0.4618 (1378/2984) 1 Intact Os_TE_396606 Os_TE_396544 Chr4 28776805 28776806 + INDITTO 263 0.0007 (2/2983) 0 * Os_TE_396543 Os_TE_396543 Chr4 28776803 28776802 - INDITTO 263 0.0007 (2/2984) 0 * Os_TE_396544 Os_TE_396520 Chr4 28770347 28770148 - ORSgTEMT02000041 194 0.3892 (1149/2952) 1 Intact * Os_TE_396502 Chr4 28764648 28764647 - ORSgTEMT02400179 221 0.5153 (1537/2983) 0 * Os_TE_396501 Os_TE_396501 Chr4 28764646 28764647 - ORSgTEMT02400246 177 0.5171 (1544/2986) 0 * Os_TE_396502 Os_TE_396475 Chr4 28750298 28750299 - INDITTO 263 0.5228 (1557/2978) 0 * * Os_TE_396463 Chr4 28746973 28746974 - SC-8_LTR 4951 0.0007 (2/2992) 0 * Os_TE_396462 Os_TE_396462 Chr4 28746969 28746968 + SC-8_LTR 4951 0.0007 (2/2990) 0 * Os_TE_396463 Os_TE_396461 Chr4 28746954 28746955 - COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_396460 Os_TE_396460 Chr4 28746950 28746949 + COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_396461 Os_TE_396447 Chr4 28740223 28740224 + COPIA2-LTR_OS 6433 0.0020 (6/2995) 0 * Os_TE_396446 Os_TE_396446 Chr4 28740219 28740218 - COPIA2-LTR_OS 6433 0.0020 (6/2996) 0 * Os_TE_396447 Os_TE_396423 Chr4 28731094 28731093 - TRUNCATOR2_LTR 2904 0.0030 (9/2996) 0 * * Os_TE_396413 Chr4 28723315 28723314 + ORSgTEMT01601591 242 0.0010 (3/2991) 0 * * Os_TE_396401 Chr4 28717238 28717239 + TNR8-21 428 0.0007 (2/2930) 0 * * Os_TE_396384 Chr4 28715163 28715164 + TWIF 586 0.0265 (78/2948) 0 * Os_TE_396383 Os_TE_396383 Chr4 28715156 28715155 - ORSiTETNOOT00134 607 0.0207 (61/2942) 0 * Os_TE_396384 Os_TE_396351 Chr4 28701963 28701964 - COPI2_LTR 4733 0.0013 (4/2996) 0 * Os_TE_396350 Os_TE_396350 Chr4 28701958 28701957 + COPI2_LTR 4733 0.0013 (4/2997) 0 * Os_TE_396351 Os_TE_396343 Chr4 28699699 28699698 + SZ-62LTR 3649 0.0167 (50/2996) 0 * * Os_TE_396338 Chr4 28699235 28691449 + RETROSAT4_LTR 13504 0.3902 (1165/2986) 1 Solo_LTR Os_TE_396326 Os_TE_396326 Chr4 28691452 28699235 - SZ-35LTR 3853 0.3877 (1151/2969) 1 Intact Os_TE_396338 Os_TE_396314 Chr4 28688556 28688557 + ORSiTERTOOT00074 4935 0.0003 (1/2997) 0 * * Os_TE_396302 Chr4 28681582 28685432 - RETROSAT4_LTR 13504 0.3941 (1174/2979) 1 Solo_LTR * Os_TE_396294 Chr4 28676059 28676060 - COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_396293 Os_TE_396293 Chr4 28676055 28676054 + COPI2_LTR 4733 0.0003 (1/2997) 0 * Os_TE_396294 Os_TE_396291 Chr4 28673854 28673855 - HARB-1_OS 5166 0.0003 (1/2995) 0 * Os_TE_396290 Os_TE_396290 Chr4 28673852 28673851 + HARB-1_OS 5166 0.0003 (1/2994) 0 * Os_TE_396291 Os_TE_396266 Chr4 28663600 28663601 + ORSgTETNOOT00908 242 0.0007 (2/2998) 0 * * Os_TE_396261 Chr4 28662351 28662352 + ORSgTEMT00600376 329 0.0010 (3/2996) 0 * Os_TE_396260 Os_TE_396260 Chr4 28662346 28662345 + ORSgTEMT00600272 361 0.0010 (3/2995) 0 * Os_TE_396261 Os_TE_396259 Chr4 28661028 28656637 + SC-7_LTR 4431 0.3875 (1157/2986) 1 Intact Os_TE_396255 Os_TE_396255 Chr4 28656637 28661028 - SC-7_LTR 4431 0.3947 (1181/2992) 1 Intact Os_TE_396259 Os_TE_396224 Chr4 28638495 28614128 + RETRO2_LTR 12874 0.3801 (1122/2952) 1 Intact Os_TE_396199 Os_TE_396199 Chr4 28614128 28638495 - RETRO2_LTR 12874 0.3894 (1159/2976) 1 Intact Os_TE_396224 Os_TE_396144 Chr4 28588853 28588854 - SC-3_LTR 5748 0.0003 (1/2975) 0 * Os_TE_396143 Os_TE_396143 Chr4 28588849 28588848 + ORSiTERTOOT00296 5553 0.0003 (1/2972) 0 * Os_TE_396144 Os_TE_396096 Chr4 28556966 28556967 + COPI2_LTR 4733 0.0007 (2/2994) 0 * Os_TE_396095 Os_TE_396095 Chr4 28556962 28556961 - COPI2_LTR 4733 0.0007 (2/2975) 0 * Os_TE_396096 Os_TE_396088 Chr4 28553706 28553705 + RETRO2A_LTR 12895 0.0013 (4/2983) 0 * * Os_TE_396087 Chr4 28553438 28553439 + RIREX_LTR 8828 0.0007 (2/2984) 0 * * Os_TE_396049 Chr4 28544705 28544704 - STOWAWAY51_OS 246 0.0007 (2/2993) 0 * Os_TE_396048 Os_TE_396048 Chr4 28544702 28544703 - STOWAWAY51_OS 246 0.0007 (2/2995) 0 * Os_TE_396049 Os_TE_396047 Chr4 28544506 28544507 - ORSgTETNOOT02417 265 0.0372 (111/2983) 0 * Os_TE_396046 Os_TE_396046 Chr4 28544504 28544503 - INDITTO 263 0.0384 (115/2991) 0 * Os_TE_396047 Os_TE_396025 Chr4 28533877 28533878 - NDNA2TNA_OS 346 0.0017 (5/2997) 0 * Os_TE_396024 Os_TE_396024 Chr4 28533875 28533874 + NDNA2TNA_OS 346 0.0020 (6/2999) 0 * Os_TE_396025 Os_TE_396013 Chr4 28530886 28530887 - ORSgTETNOOT01153 258 0.0007 (2/2946) 0 * * Os_TE_395998 Chr4 28521660 28521659 - COPI2_LTR 4733 0.0003 (1/2967) 0 * * Os_TE_395980 Chr4 28515364 28515365 + CRM-LTR_OS 7749 0.0211 (63/2981) 0 * * Os_TE_395889 Chr4 28466039 28466038 - STOWAWAY51_OS 246 0.0003 (1/2993) 0 * Os_TE_395888 Os_TE_395888 Chr4 28466036 28466037 - STOWAWAY51_OS 246 0.0003 (1/2992) 0 * Os_TE_395889 Os_TE_395881 Chr4 28465388 28465389 + ORSiTERTOOT00074 4935 0.0010 (3/2894) 0 * * Os_TE_395879 Chr4 28464367 28464368 - STOWAWAY51_OS 246 0.0010 (3/2996) 0 * * Os_TE_395801 Chr4 28451936 28451937 - MPING 430 0.0003 (1/2975) 0 * Os_TE_395800 Os_TE_395800 Chr4 28451934 28451933 + MPING 430 0.0003 (1/2978) 0 * Os_TE_395801 Os_TE_395765 Chr4 28443612 28443611 - RETROSAT2LTR 12796 0.0183 (51/2780) 0 * * Os_TE_395745 Chr4 28441610 28441609 + STOWAWAY44_OS 240 0.0003 (1/2994) 0 * * Os_TE_395669 Chr4 28404153 28404154 - AMYLTP 383 0.0013 (4/2968) 0 * Os_TE_395668 Os_TE_395668 Chr4 28404144 28404143 + AMYLTP 383 0.0013 (4/2970) 0 * Os_TE_395669 Os_TE_395666 Chr4 28403744 28403745 + EnSpm-13_OS 11171 0.0003 (1/2922) 0 * Os_TE_395665 Os_TE_395665 Chr4 28403742 28403741 - EnSpm-13_OS 11171 0.0003 (1/2908) 0 * Os_TE_395666 Os_TE_395626 Chr4 28393704 28393705 - DNAUN1_OS 408 0.0008 (1/1234) 0 * * Os_TE_395570 Chr4 28368106 28368107 + MPING 430 0.0003 (1/2932) 0 * * Os_TE_395515 Chr4 28341742 28341741 + ORSgTETNOOT01834 251 0.0050 (15/2994) 0 * * Os_TE_395463 Chr4 28313107 28313106 - RIRE3A_LTR 10580 0.0003 (1/2990) 0 * * Os_TE_395426 Chr4 28304779 28304778 + STOWAWAY44_OS 240 0.0003 (1/2997) 0 * * Os_TE_395422 Chr4 28298627 28298628 - COPIA2-LTR_OS 6433 0.0003 (1/2963) 0 * Os_TE_395421 Os_TE_395421 Chr4 28298623 28298622 + COPIA2-LTR_OS 6433 0.0003 (1/2961) 0 * Os_TE_395422 Os_TE_395385 Chr4 28276776 28276775 + TRUNCATOR 2918 0.4530 (1340/2958) 0 * Os_TE_395384 Os_TE_395384 Chr4 28276775 28276776 - TRUNCATOR 2918 0.4630 (1383/2987) 0 * Os_TE_395385 Os_TE_395362 Chr4 28266086 28266085 + RETROSAT4_LTR 13504 0.4562 (1270/2784) 0 * * Os_TE_395358 Chr4 28262737 28262736 - TRUNCATOR 2918 0.0007 (2/2988) 0 * Os_TE_395357 Os_TE_395357 Chr4 28262736 28262737 + TRUNCATOR 2918 0.0007 (2/2990) 0 * Os_TE_395358 Os_TE_395344 Chr4 28260016 28260015 - SZ-22_LTR 4403 0.0003 (1/2959) 0 * * Os_TE_395273 Chr4 28224411 28224412 - F569 228 0.4600 (1370/2978) 0 * Os_TE_395272 Os_TE_395272 Chr4 28224409 28224408 + F569 228 0.4634 (1387/2993) 0 * Os_TE_395273 Os_TE_395265 Chr4 28223458 28223459 - OLO24 345 0.0216 (63/2920) 0 * Os_TE_395264 Os_TE_395264 Chr4 28223456 28223455 + OLO24 345 0.0215 (63/2925) 0 * Os_TE_395265 Os_TE_395234 Chr4 28207423 28207424 + GYPSY-A_LTR 8951 0.0016 (4/2466) 0 * Os_TE_395233 Os_TE_395233 Chr4 28207419 28207418 - SZ-40LTR 2465 0.0022 (6/2669) 0 * Os_TE_395234 Os_TE_395200 Chr4 28196087 28196086 + MERMITEB 1610 0.0007 (2/2766) 0 * * Os_TE_395171 Chr4 28183975 28183976 - SUSU 279 0.0020 (6/2988) 0 * Os_TE_395170 Os_TE_395170 Chr4 28183973 28183972 + ORSgTEMT05000092 279 0.0020 (6/2991) 0 * Os_TE_395171 Os_TE_395133 Chr4 28167664 28167665 - COPIA2-LTR_OS 6433 0.0004 (1/2553) 0 * * Os_TE_395124 Chr4 28165281 28165282 - COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_395123 Os_TE_395123 Chr4 28165277 28165276 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_395124 Os_TE_395093 Chr4 28151691 28151690 + ORSgTEMT00800058 376 0.2080 (428/2058) 0 * * Os_TE_395091 Chr4 28151495 28151496 + AMYLTP 383 0.0004 (1/2291) 0 * * Os_TE_395056 Chr4 28128197 28128198 - COPI2_LTR 4733 0.0003 (1/2999) 0 * Os_TE_395055 Os_TE_395055 Chr4 28128193 28128192 + COPI2_LTR 4733 0.0003 (1/2999) 0 * Os_TE_395056 Os_TE_395053 Chr4 28127424 28127425 - COPI2_LTR 4733 0.0010 (3/2997) 0 * Os_TE_395052 Os_TE_395052 Chr4 28127420 28127419 + COPI2_LTR 4733 0.0010 (3/2998) 0 * Os_TE_395053 Os_TE_395050 Chr4 28126825 28126826 - RETRO1_LTR 8314 0.0007 (2/2988) 0 * Os_TE_395049 Os_TE_395049 Chr4 28126821 28126820 + RETRO2_LTR 12874 0.0007 (2/2987) 0 * Os_TE_395050 Os_TE_394991 Chr4 28099082 28099083 + COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_394990 Os_TE_394990 Chr4 28099078 28099077 - COPIA2-LTR_OS 6433 0.0007 (2/2995) 0 * Os_TE_394991 Os_TE_394959 Chr4 28085376 28085377 + MPING 430 0.0003 (1/2991) 0 * Os_TE_394958 Os_TE_394958 Chr4 28085374 28085373 - MPING 430 0.0003 (1/2988) 0 * Os_TE_394959 Os_TE_394957 Chr4 28084494 28084495 - COPI2_LTR 4733 0.0003 (1/2998) 0 * * Os_TE_394955 Chr4 28083198 28083199 + INDITTO 263 0.0003 (1/2992) 0 * Os_TE_394954 Os_TE_394954 Chr4 28083196 28083195 - INDITTO 263 0.0003 (1/2992) 0 * Os_TE_394955 Os_TE_394901 Chr4 28044536 28040600 + RETROSAT4_LTR 13504 0.3999 (1185/2963) 1 Solo_LTR Os_TE_394896 Os_TE_394896 Chr4 28040600 28044536 - RETROSAT4_LTR 13504 0.4036 (1204/2983) 1 Solo_LTR Os_TE_394901 Os_TE_394883 Chr4 28039417 28039418 - INDITTO 263 0.0003 (1/2990) 0 * Os_TE_394882 Os_TE_394882 Chr4 28039415 28039414 + INDITTO 263 0.0003 (1/2989) 0 * Os_TE_394883 Os_TE_394855 Chr4 28032977 28032976 - COPI2_LTR 4733 0.0003 (1/2959) 0 * * Os_TE_394836 Chr4 28027632 28027633 - SC-3_LTR 5748 0.0003 (1/2986) 0 * Os_TE_394835 Os_TE_394835 Chr4 28027628 28027627 + ORSiTERTOOT00296 5553 0.0003 (1/2985) 0 * Os_TE_394836 Os_TE_394826 Chr4 28024992 28024991 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * * Os_TE_394804 Chr4 28012324 28012325 + COPIA2-LTR_OS 6433 0.0003 (1/2912) 0 * Os_TE_394803 Os_TE_394803 Chr4 28012320 28012319 - COPIA2-LTR_OS 6433 0.0003 (1/2939) 0 * Os_TE_394804 Os_TE_394773 Chr4 28000146 28000147 + ORSiTERTOOT00226 792 0.0003 (1/2982) 0 * Os_TE_394772 Os_TE_394772 Chr4 28000142 28000141 - SZ-22_LTR 4403 0.0003 (1/2982) 0 * Os_TE_394773 Os_TE_394763 Chr4 27995204 27994966 - STOWAWAY51_OS 246 0.8121 (2316/2852) 1 Intact Os_TE_394761 Os_TE_394761 Chr4 27994963 27995199 + STOWAWAY51_OS 246 0.8280 (2460/2971) 1 Intact Os_TE_394763 Os_TE_394741 Chr4 27982863 27982862 - SZ-35LTR 3853 0.8292 (466/562) -1 * * Os_TE_394717 Chr4 27958981 27958982 + F770 284 0.3850 (1147/2979) 0 * * Os_TE_394705 Chr4 27955831 27955830 + CACTA-B 1103 0.5092 (1381/2712) 0 * Os_TE_394704 Os_TE_394704 Chr4 27955830 27955831 - ORSgTETN00200001 10994 0.5478 (1583/2890) 0 * Os_TE_394705 Os_TE_394693 Chr4 27952232 27952231 - STOWAWAY44_OS 240 0.0007 (2/2955) 0 * Os_TE_394692 Os_TE_394692 Chr4 27952229 27952230 + STOWAWAY44_OS 240 0.0007 (2/2967) 0 * Os_TE_394693 Os_TE_394679 Chr4 27950336 27950337 + COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_394678 Os_TE_394678 Chr4 27950332 27950331 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_394679 Os_TE_394677 Chr4 27950144 27950145 + COPIA2-LTR_OS 6433 0.0010 (3/2988) 0 * Os_TE_394676 Os_TE_394676 Chr4 27950140 27950139 - COPIA2-LTR_OS 6433 0.0010 (3/2991) 0 * Os_TE_394677 Os_TE_394651 Chr4 27944159 27944160 - SZ-48LTR 3632 0.0351 (105/2988) 0 * * Os_TE_394641 Chr4 27940499 27940500 - ORSgTETNOOT00053 263 0.3817 (1139/2984) 0 * Os_TE_394640 Os_TE_394640 Chr4 27940497 27940496 - INDITTO 263 0.3816 (1138/2982) 0 * Os_TE_394641 Os_TE_394639 Chr4 27939970 27939971 - SZ-55_LTR 10318 0.0003 (1/2988) 0 * Os_TE_394638 Os_TE_394638 Chr4 27939966 27939965 + SZ-55_LTR 10318 0.0003 (1/2984) 0 * Os_TE_394639 Os_TE_394624 Chr4 27930919 27918436 + RETRO2_LTR 12874 0.5011 (1387/2768) 1 Intact * Os_TE_394602 Chr4 27916480 27916481 - SZ-55_LTR 10318 0.0004 (1/2822) 0 * * Os_TE_394561 Chr4 27904588 27904589 - ORSiTERTOOT00188 2195 0.0003 (1/2972) 0 * * Os_TE_394510 Chr4 27891666 27891667 + INDITTO 263 0.1202 (350/2912) 0 * * Os_TE_394492 Chr4 27883946 27883945 - SZ-48LTR 3632 0.0017 (5/2916) 0 * * Os_TE_394491 Chr4 27883551 27883550 - MDR1 7383 0.0004 (1/2853) 0 * * Os_TE_394487 Chr4 27882544 27882545 - MPING 430 0.0007 (2/2960) 0 * * Os_TE_394485 Chr4 27881441 27881440 + ORSgTEMT00700017 386 0.0003 (1/2972) 0 * * Os_TE_394440 Chr4 27867010 27867011 - Cassandra_OS-LTR 764 0.0017 (5/2944) 0 * Os_TE_394439 Os_TE_394439 Chr4 27867006 27867005 + RETROSAT4_LTR 13504 0.0017 (5/2928) 0 * Os_TE_394440 Os_TE_394435 Chr4 27864321 27864322 + INDITTO 263 0.0003 (1/2996) 0 * * Os_TE_394398 Chr4 27848398 27848399 - RIREX_LTR 8828 0.0003 (1/2966) 0 * Os_TE_394397 Os_TE_394397 Chr4 27848387 27848386 - TREP215 239 0.0017 (5/2971) 0 * Os_TE_394398 Os_TE_394396 Chr4 27848384 27848385 + ORSgTEMT01600662 238 0.0020 (6/2965) 0 * * Os_TE_394395 Chr4 27847560 27847561 + SZ-48LTR 3632 0.1843 (539/2924) 0 * Os_TE_394394 Os_TE_394394 Chr4 27847556 27847555 - SZ-48LTR 3632 0.1929 (568/2945) 0 * Os_TE_394395 Os_TE_394386 Chr4 27846398 27846397 - ORSgTEMT01400014 209 0.0020 (6/2996) 0 * Os_TE_394385 Os_TE_394385 Chr4 27846397 27846398 + STOWAWAY9_OS 235 0.0017 (5/2998) 0 * Os_TE_394386 Os_TE_394353 Chr4 27836810 27836809 + MPING 430 0.0003 (1/2931) 0 * * Os_TE_394351 Chr4 27835927 27835928 - NDNA1TNA_OS 334 0.0104 (31/2994) 0 * Os_TE_394350 Os_TE_394350 Chr4 27835925 27835924 + NDNA1TNA_OS 334 0.0094 (28/2993) 0 * Os_TE_394351 Os_TE_394345 Chr4 27831527 27831526 + SEVERIN-2 1952 0.3508 (1045/2979) 0 * * Os_TE_394339 Chr4 27824048 27824047 + TRUNCATOR 2918 0.0087 (26/2992) 0 * Os_TE_394338 Os_TE_394338 Chr4 27824047 27824048 - TRUNCATOR 2918 0.0087 (26/2991) 0 * Os_TE_394339 Os_TE_394311 Chr4 27808346 27808347 + STOWAWAY45_OS 266 0.0003 (1/2987) 0 * * Os_TE_394292 Chr4 27790637 27790638 + ORSiTERTOOT00028 8600 0.3135 (904/2884) 0 * Os_TE_394291 Os_TE_394291 Chr4 27790633 27790632 - TRUNCATOR2_LTR 2904 0.3522 (1054/2993) 0 * Os_TE_394292 Os_TE_394276 Chr4 27787952 27787953 + SEVERIN-2 1952 0.0007 (2/2992) 0 * * Os_TE_394275 Chr4 27787772 27787773 + MPING 430 0.0003 (1/2995) 0 * Os_TE_394274 Os_TE_394274 Chr4 27787770 27787769 - MPING 430 0.0003 (1/2993) 0 * Os_TE_394275 Os_TE_394243 Chr4 27771084 27771085 + ORSgTEMT01601591 242 0.0010 (3/2932) 0 * * Os_TE_394227 Chr4 27757642 27757643 + SZ-55_LTR 10318 0.0007 (2/2999) 0 * Os_TE_394226 Os_TE_394226 Chr4 27757638 27757637 - SZ-55_LTR 10318 0.0007 (2/2998) 0 * Os_TE_394227 Os_TE_394222 Chr4 27756784 27756785 + MPING 430 0.0007 (2/2998) 0 * * Os_TE_394171 Chr4 27744743 27744744 + ORSiTERTOOT00074 4935 0.0003 (1/2984) 0 * Os_TE_394170 Os_TE_394170 Chr4 27744739 27744738 + ORSiTERTOOT00074 4935 0.0003 (1/2982) 0 * Os_TE_394171 Os_TE_394163 Chr4 27742840 27742839 - ENSPM4_OS 11610 0.5723 (1710/2988) 0 * * Os_TE_394162 Chr4 27740095 27740096 + RIREX_LTR 8828 0.0007 (2/2995) 0 * Os_TE_394161 Os_TE_394161 Chr4 27740091 27740090 - RIREX_LTR 8828 0.0007 (2/2997) 0 * Os_TE_394162 Os_TE_394116 Chr4 27705912 27705913 + RETROSAT2LTR 12796 0.0013 (4/2992) 0 * Os_TE_394115 Os_TE_394115 Chr4 27705910 27705909 - RETROSAT2LTR 12796 0.0013 (4/2989) 0 * Os_TE_394116 Os_TE_394078 Chr4 27690171 27690170 + ORSiTERTOOT00367 5639 0.0010 (3/2977) 0 * * Os_TE_394074 Chr4 27686640 27686639 - SZ-35LTR 3853 0.5679 (1697/2988) 0.06 * * Os_TE_394069 Chr4 27678930 27678931 - ORSgTETNOOT00053 263 0.0003 (1/2998) 0 * Os_TE_394068 Os_TE_394068 Chr4 27678928 27678927 - INDITTO 263 0.0003 (1/2997) 0 * Os_TE_394069 Os_TE_394061 Chr4 27672848 27672849 + HARB-1_OS 5166 0.0003 (1/2998) 0 * Os_TE_394060 Os_TE_394060 Chr4 27672846 27672845 - HARB-1_OS 5166 0.0003 (1/2998) 0 * Os_TE_394061 Os_TE_394045 Chr4 27662941 27662942 - COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_394044 Os_TE_394044 Chr4 27662937 27662936 + COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_394045 Os_TE_394006 Chr4 27642766 27642767 - SC-8_LTR 4951 0.0047 (14/2992) 0 * Os_TE_394005 Os_TE_394005 Chr4 27642762 27642761 + SC-8_LTR 4951 0.0047 (14/2994) 0 * Os_TE_394006 Os_TE_394002 Chr4 27634285 27634286 + OSTE28 298 0.0007 (1/1389) 0 * * Os_TE_393974 Chr4 27628945 27628944 - ORSgTERTOOT00067 6483 0.0003 (1/2983) 0 * * Os_TE_393963 Chr4 27616575 27616574 + ORSgTEMT01601591 242 0.0003 (1/2997) 0 * * Os_TE_393961 Chr4 27616082 27616083 + MPING 430 0.0023 (7/2994) 0 * Os_TE_393960 Os_TE_393960 Chr4 27616080 27616079 - MPING 430 0.0023 (7/2997) 0 * Os_TE_393961 Os_TE_393949 Chr4 27608209 27608210 + ORSiTERTOOT00381 4988 0.0003 (1/2998) 0 * Os_TE_393948 Os_TE_393948 Chr4 27608205 27608204 - SC-8_LTR 4951 0.0003 (1/2998) 0 * Os_TE_393949 Os_TE_393916 Chr4 27598203 27598204 + TRUNCATOR2_LTR 2904 0.0017 (5/2990) 0 * Os_TE_393915 Os_TE_393915 Chr4 27598199 27598198 - TRUNCATOR2_LTR 2904 0.0020 (6/2986) 0 * Os_TE_393916 Os_TE_393891 Chr4 27572106 27572105 - ORSgTEMT02400179 221 0.0007 (2/2887) 0 * * Os_TE_393878 Chr4 27562533 27562534 - RETRO1_LTR 8314 0.0003 (1/2972) 0 * Os_TE_393877 Os_TE_393877 Chr4 27562529 27562528 + RETRO2A_LTR 12895 0.0003 (1/2968) 0 * Os_TE_393878 Os_TE_393838 Chr4 27546748 27546749 - COPIA2-LTR_OS 6433 0.0017 (5/2993) 0 * Os_TE_393837 Os_TE_393837 Chr4 27546744 27546743 + COPIA2-LTR_OS 6433 0.0017 (5/2996) 0 * Os_TE_393838 Os_TE_393815 Chr4 27542062 27542063 - ORSgTETNOOT02417 265 0.0003 (1/2997) 0 * Os_TE_393814 Os_TE_393814 Chr4 27542060 27542059 - INDITTO 263 0.0003 (1/2997) 0 * Os_TE_393815 Os_TE_393791 Chr4 27536725 27536726 - HARB-1_OS 5166 0.0013 (4/2991) 0 * Os_TE_393790 Os_TE_393790 Chr4 27536723 27536722 + HARB-1_OS 5166 0.0013 (4/2984) 0 * Os_TE_393791 Os_TE_393789 Chr4 27536670 27536671 + RIREX_LTR 8828 0.0003 (1/2997) 0 * Os_TE_393788 Os_TE_393788 Chr4 27536666 27536665 - RIREX_LTR 8828 0.0003 (1/2998) 0 * Os_TE_393789 Os_TE_393779 Chr4 27534487 27534488 - OSTONOR1_LTR 6440 0.3571 (1065/2982) 0 * Os_TE_393778 Os_TE_393778 Chr4 27534483 27534482 + OSTONOR1_LTR 6440 0.3624 (1085/2994) 0 * Os_TE_393779 Os_TE_393763 Chr4 27532591 27532590 + ORSiTERTOOT00097 759 0.0003 (1/2953) 0 * * Os_TE_393752 Chr4 27527814 27527813 + ORSgTEMT00900648 236 0.0020 (6/2994) 0 * Os_TE_393751 Os_TE_393751 Chr4 27527812 27527813 + ORSgTEMT00901844 250 0.0017 (5/2998) 0 * Os_TE_393752 Os_TE_393735 Chr4 27521696 27521697 - LINE-4_OS 3662 0.0020 (6/2998) 0 * * Os_TE_393716 Chr4 27514779 27514780 - HARB-1_OS 5166 0.0013 (4/2988) 0 * Os_TE_393715 Os_TE_393715 Chr4 27514777 27514776 + HARB-1_OS 5166 0.0013 (4/2987) 0 * Os_TE_393716 Os_TE_393706 Chr4 27512731 27512730 + MPING 430 0.0007 (2/2998) 0 * * Os_TE_393704 Chr4 27512392 27512393 - STOWAWAY51_OS 246 0.0007 (2/2997) 0 * * Os_TE_393703 Chr4 27511997 27511998 - COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_393702 Os_TE_393702 Chr4 27511993 27511992 + COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_393703 Os_TE_393701 Chr4 27511882 27511883 - INDITTO 263 0.0003 (1/2990) 0 * Os_TE_393700 Os_TE_393700 Chr4 27511880 27511879 + INDITTO 263 0.0003 (1/2993) 0 * Os_TE_393701 Os_TE_393683 Chr4 27501714 27501715 + ORSiTERTOOT00097 759 0.0003 (1/2981) 0 * * Os_TE_393679 Chr4 27501161 27501162 + DS-RICE4N 715 0.3345 (968/2894) 0 * * Os_TE_393645 Chr4 27481822 27481823 - SZ-22_LTR 4403 0.0007 (2/2992) 0 * Os_TE_393644 Os_TE_393644 Chr4 27481818 27481817 + ORSiTERTOOT00226 792 0.0007 (2/2994) 0 * Os_TE_393645 Os_TE_393630 Chr4 27475340 27475339 - STOWAWAY51_OS 246 0.0003 (1/2961) 0 * Os_TE_393629 Os_TE_393629 Chr4 27475334 27475335 + STOWAWAY51_OS 246 0.0007 (2/2952) 0 * Os_TE_393630 Os_TE_393608 Chr4 27465547 27465548 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_393607 Os_TE_393607 Chr4 27465543 27465542 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_393608 Os_TE_393592 Chr4 27462599 27462600 - SC-8_LTR 4951 0.0003 (1/2985) 0 * Os_TE_393591 Os_TE_393591 Chr4 27462595 27462594 + SC-8_LTR 4951 0.0003 (1/2986) 0 * Os_TE_393592 Os_TE_393584 Chr4 27458405 27458404 - SC-8_LTR 4951 0.0003 (1/2979) 0 * * Os_TE_393549 Chr4 27430802 27430803 + ORSiTERTOOT00028 8600 0.0003 (1/2989) 0 * Os_TE_393548 Os_TE_393548 Chr4 27430798 27430797 - TRUNCATOR2_LTR 2904 0.0003 (1/2989) 0 * Os_TE_393549 Os_TE_393512 Chr4 27408701 27408700 - RIREX_LTR 8828 0.0007 (2/2978) 0 * * Os_TE_393510 Chr4 27408196 27408195 + COPI2_LTR 4733 0.0003 (1/2985) 0 * * Os_TE_393502 Chr4 27406238 27406237 - ORSgTEMT00600304 361 0.0020 (6/2984) 0 * * Os_TE_393475 Chr4 27398032 27398033 - RIREX_LTR 8828 0.0003 (1/2987) 0 * Os_TE_393474 Os_TE_393474 Chr4 27398028 27398027 + RIREX_LTR 8828 0.0003 (1/2985) 0 * Os_TE_393475 Os_TE_393444 Chr4 27388632 27388631 + ENSPM4_OS 11610 0.4693 (1401/2985) 0 * * Os_TE_393430 Chr4 27383671 27383672 + COPI2_LTR 4733 0.0007 (2/2980) 0 * Os_TE_393429 Os_TE_393429 Chr4 27383667 27383666 - COPI2_LTR 4733 0.0007 (2/2984) 0 * Os_TE_393430 Os_TE_393423 Chr4 27382074 27382458 - ORSgTEMT00300008 396 0.5486 (1637/2984) 1 Intact * Os_TE_393407 Chr4 27373312 27373311 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * * Os_TE_393378 Chr4 27365251 27365250 - INDITTO 263 0.0034 (10/2982) 0 * * Os_TE_393305 Chr4 27325389 27325390 + INDITTO 263 0.0003 (1/2990) 0 * Os_TE_393304 Os_TE_393304 Chr4 27325387 27325386 - INDITTO 263 0.0003 (1/2991) 0 * Os_TE_393305 Os_TE_393279 Chr4 27301811 27314587 - RETRO2_LTR 12874 0.5546 (1650/2975) 1 Intact * Os_TE_393268 Chr4 27297133 27297134 - HARB-1_OS 5166 0.0005 (1/1993) 0 * Os_TE_393267 Os_TE_393267 Chr4 27297131 27297130 + HARB-1_OS 5166 0.0003 (1/2929) 0 * Os_TE_393268 Os_TE_393243 Chr4 27292452 27292451 - COPI2_LTR 4733 0.0003 (1/2982) 0 * * Os_TE_393220 Chr4 27284313 27284312 - TYPEM 227 0.0003 (1/2999) 0 * Os_TE_393219 Os_TE_393219 Chr4 27284312 27284313 - ORSgTEMT02400246 177 0.0003 (1/2997) 0 * Os_TE_393220 Os_TE_393217 Chr4 27282937 27283161 + ORSgTEMT02400206 225 0.5822 (1742/2992) 1 Intact * Os_TE_393200 Chr4 27272981 27272982 - COPI2_LTR 4733 0.0010 (3/2931) 0 * Os_TE_393199 Os_TE_393199 Chr4 27272977 27272976 + COPI2_LTR 4733 0.0010 (3/2940) 0 * Os_TE_393200 Os_TE_393178 Chr4 27266119 27266120 + TWIFB1 3737 0.0057 (17/2991) 0 * * Os_TE_393176 Chr4 27265603 27265602 + YOUREN 286 0.0003 (1/2965) 0 * * Os_TE_393165 Chr4 27256373 27256374 - SC-3_LTR 5748 0.0003 (1/2992) 0 * Os_TE_393164 Os_TE_393164 Chr4 27256369 27256368 + ORSiTERTOOT00296 5553 0.0003 (1/2994) 0 * Os_TE_393165 Os_TE_393158 Chr4 27251504 27251505 - TYPEM 227 0.0003 (1/2997) 0 * Os_TE_393157 Os_TE_393157 Chr4 27251503 27251502 - ORSgTEMT02400179 221 0.0003 (1/2994) 0 * Os_TE_393158 Os_TE_393143 Chr4 27249876 27249875 + RETRO2_LTR 12874 0.4317 (1274/2951) 0 * * Os_TE_393123 Chr4 27238640 27238641 - ORSiTETNOOT00134 607 0.0003 (1/2975) 0 * Os_TE_393122 Os_TE_393122 Chr4 27238633 27238632 + TWIF 586 0.0003 (1/2975) 0 * Os_TE_393123 Os_TE_393083 Chr4 27229601 27229602 + INDITTO 263 0.0010 (3/2953) 0 * Os_TE_393082 Os_TE_393082 Chr4 27229599 27229598 - INDITTO 263 0.0010 (3/2948) 0 * Os_TE_393083 Os_TE_393080 Chr4 27229526 27229527 - WUJI 257 0.0010 (3/2925) 0 * * Os_TE_393066 Chr4 27226653 27226654 - STOWAWAY51_OS 246 0.0003 (1/2904) 0 * * Os_TE_393040 Chr4 27199135 27199136 + TELIA 141 0.0003 (1/2941) 0 * Os_TE_393039 Os_TE_393039 Chr4 27199127 27199126 - TELIA 141 0.0003 (1/2923) 0 * Os_TE_393040 Os_TE_393020 Chr4 27182769 27182770 - DS-RICE2N 613 0.0658 (197/2995) 0 * Os_TE_393019 Os_TE_393019 Chr4 27182762 27182761 + DS-RICE2N 613 0.0664 (199/2996) 0 * Os_TE_393020 Os_TE_393018 Chr4 27182604 27182605 - ORSgTEMT02400179 221 0.0668 (200/2996) 0 * Os_TE_393017 Os_TE_393017 Chr4 27182603 27182602 - TYPEM 227 0.0658 (197/2994) 0 * Os_TE_393018 Os_TE_393001 Chr4 27177884 27177883 - SZ-22_LTR 4403 0.0010 (3/2994) 0 * * Os_TE_392980 Chr4 27163117 27163118 - TRUNCATOR2_LTR 2904 0.3180 (946/2975) 0 * * Os_TE_392948 Chr4 27138431 27138094 + ORSgTEMT00100272 356 0.6401 (1905/2976) 1 Intact * Os_TE_392937 Chr4 27129774 27129775 + MPING 430 0.0050 (15/2990) 0 * Os_TE_392936 Os_TE_392936 Chr4 27129772 27129771 - MPING 430 0.0050 (15/2988) 0 * Os_TE_392937 Os_TE_392933 Chr4 27128552 27128553 + ORSgTETNOOT01834 251 0.0007 (2/2990) 0 * Os_TE_392932 Os_TE_392932 Chr4 27128550 27128549 + ORSgTETNOOT01834 251 0.0007 (2/2985) 0 * Os_TE_392933 Os_TE_392920 Chr4 27125369 27125370 + ORSgTEMT00500209 122 0.0003 (1/2992) 0 * * Os_TE_392889 Chr4 27106593 27106592 + STOWAWAY51_OS 246 0.0003 (1/2997) 0 * Os_TE_392888 Os_TE_392888 Chr4 27106587 27106588 + ORSgTEMT01601591 242 0.0003 (1/2997) 0 * Os_TE_392889 Os_TE_392881 Chr4 27103422 27103421 - HARB-1_OS 5166 0.0003 (1/2996) 0 * * Os_TE_392824 Chr4 27068912 27068911 + MPING 430 0.0003 (1/2981) 0 * * Os_TE_392818 Chr4 27064512 27064513 - ORSgTEMT01400019 216 0.0003 (1/2955) 0 * * Os_TE_392779 Chr4 27046150 27046151 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_392778 Os_TE_392778 Chr4 27046146 27046145 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_392779 Os_TE_392771 Chr4 27042323 27042324 - SC-3_LTR 5748 0.0003 (1/2989) 0 * * Os_TE_392736 Chr4 27014030 27014031 + CRM-LTR_OS 7749 0.0003 (1/2861) 0 * * Os_TE_392733 Chr4 27013777 27013778 + ORSgTEMT01701663 106 0.0003 (1/2997) 0 * * Os_TE_392732 Chr4 27013471 27013472 + MPING 430 0.0003 (1/2997) 0 * Os_TE_392731 Os_TE_392731 Chr4 27013469 27013468 - MPING 430 0.0003 (1/2996) 0 * Os_TE_392732 Os_TE_392726 Chr4 27012826 27012827 + MPING 430 0.0003 (1/2993) 0 * Os_TE_392725 Os_TE_392725 Chr4 27012824 27012823 - MPING 430 0.0003 (1/2996) 0 * Os_TE_392726 Os_TE_392723 Chr4 27011584 27011585 + MPING 430 0.0054 (16/2959) 0 * Os_TE_392722 Os_TE_392722 Chr4 27011582 27011581 - MPING 430 0.0051 (15/2941) 0 * Os_TE_392723 Os_TE_392698 Chr4 27003933 27003934 + HARB-1_OS 5166 0.0003 (1/2997) 0 * * Os_TE_392679 Chr4 26997323 26997324 + MUDRN5_OS 374 0.0037 (11/2959) 0 * Os_TE_392678 Os_TE_392678 Chr4 26997322 26997321 - ORSgTEMT00700002 381 0.0037 (11/2974) 0 * Os_TE_392679 Os_TE_392677 Chr4 26997315 26997316 + ORSgTEMT00700017 386 0.0037 (11/2939) 0 * * Os_TE_392663 Chr4 26988447 26988448 - ORSgTETN00200001 10994 0.0464 (139/2993) 0 * Os_TE_392662 Os_TE_392662 Chr4 26988445 26988444 + SPMLIKE 10989 0.0348 (103/2964) 0 * Os_TE_392663 Os_TE_392661 Chr4 26988372 26988373 + ORSiCMCM00100019 2717 0.0003 (1/2996) 0 * Os_TE_392660 Os_TE_392660 Chr4 26988368 26988367 - TRUNCATOR2_LTR 2904 0.0003 (1/2995) 0 * Os_TE_392661 Os_TE_392619 Chr4 26962367 26962368 - RIREX_LTR 8828 0.0007 (2/2988) 0 * Os_TE_392618 Os_TE_392618 Chr4 26962363 26962362 + RIREX_LTR 8828 0.0007 (2/2989) 0 * Os_TE_392619 Os_TE_392616 Chr4 26961416 26961417 - COPI2_LTR 4733 0.0003 (1/2961) 0 * * Os_TE_392610 Chr4 26958510 26958511 + ORSiTERTOOT00296 5553 0.0003 (1/2998) 0 * Os_TE_392609 Os_TE_392609 Chr4 26958506 26958505 - SC-3_LTR 5748 0.0003 (1/2999) 0 * Os_TE_392610 Os_TE_392592 Chr4 26935864 26935865 + STOWAWAY44_OS 240 0.0003 (1/2991) 0 * * Os_TE_392585 Chr4 26933935 26933936 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_392584 Os_TE_392584 Chr4 26933931 26933930 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_392585 Os_TE_392574 Chr4 26928421 26928422 - RIREX_LTR 8828 0.0023 (7/2985) 0 * Os_TE_392573 Os_TE_392573 Chr4 26928417 26928416 + RIREX_LTR 8828 0.0023 (7/2984) 0 * Os_TE_392574 Os_TE_392531 Chr4 26902023 26902024 - COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_392530 Os_TE_392530 Chr4 26902019 26902018 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_392531 Os_TE_392519 Chr4 26898588 26898589 - F524 291 0.0003 (1/2975) 0 * * Os_TE_392480 Chr4 26869823 26869824 - TRUNCATOR 2918 0.0020 (6/2994) 0 * * Os_TE_392476 Chr4 26869659 26869658 - SZLTR 1249 0.0030 (9/2999) 0 * * Os_TE_392353 Chr4 26813473 26813474 - Cassandra_OS-LTR 764 0.0511 (153/2993) 0 * Os_TE_392352 Os_TE_392352 Chr4 26813469 26813468 + Cassandra_OS-LTR 764 0.0525 (157/2993) 0 * Os_TE_392353 Os_TE_392349 Chr4 26813207 26813208 + RETROSAT4_LTR 13504 0.0017 (5/2996) 0 * Os_TE_392348 Os_TE_392348 Chr4 26813203 26813202 - RETROSAT4_LTR 13504 0.0020 (6/2995) 0 * Os_TE_392349 Os_TE_392321 Chr4 26807192 26807193 + ORSgTETNOOT00908 242 0.0003 (1/2996) 0 * * Os_TE_392315 Chr4 26799666 26799665 + SEVERIN-2 1952 0.0003 (1/2999) 0 * * Os_TE_392306 Chr4 26792345 26792344 - STOWAWAY44_OS 240 0.0013 (4/2997) 0 * Os_TE_392305 Os_TE_392305 Chr4 26792342 26792343 - STOWAWAY51_OS 246 0.0013 (4/2997) 0 * Os_TE_392306 Os_TE_392275 Chr4 26768339 26768340 + ORSgTETNOOT00908 242 0.0003 (1/2987) 0 * * Os_TE_392229 Chr4 26751754 26751753 + STOWAWAY51_OS 246 0.0007 (2/2993) 0 * Os_TE_392228 Os_TE_392228 Chr4 26751748 26751749 - STOWAWAY51_OS 246 0.0007 (2/2996) 0 * Os_TE_392229 Os_TE_392220 Chr4 26749689 26749688 - DITTO 244 0.0003 (1/2964) 0 * * Os_TE_392140 Chr4 26709232 26709233 - KIDDOC 275 0.0003 (1/2988) 0 * * Os_TE_392130 Chr4 26705196 26705197 - COPIA1-LTR_OS 9292 0.0003 (1/2991) 0 * * Os_TE_392122 Chr4 26699120 26699119 - SC-8_LTR 4951 0.0003 (1/2991) 0 * * Os_TE_392102 Chr4 26692120 26692121 - CENTRE 280 0.0013 (4/2999) 0 * * Os_TE_392086 Chr4 26684024 26684023 - TYPEM 227 0.0574 (172/2995) 0 * Os_TE_392085 Os_TE_392085 Chr4 26684023 26684024 - ORSgTEMT02400148 214 0.0587 (176/2996) 0 * Os_TE_392086 Os_TE_392066 Chr4 26672084 26672085 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_392065 Os_TE_392065 Chr4 26672080 26672079 + COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_392066 Os_TE_392056 Chr4 26664156 26664155 + RIRE3_LTR 12054 0.0003 (1/2968) 0 * * Os_TE_392040 Chr4 26656359 26656360 + GYPSY-A_LTR 8951 0.0003 (1/2992) 0 * Os_TE_392039 Os_TE_392039 Chr4 26656357 26656356 - RETROSAT2LTR 12796 0.0003 (1/2998) 0 * Os_TE_392040 Os_TE_392017 Chr4 26646931 26646932 - SC-8_LTR 4951 0.0030 (9/2994) 0 * Os_TE_392016 Os_TE_392016 Chr4 26646927 26646926 + SC-8_LTR 4951 0.0030 (9/2994) 0 * Os_TE_392017 Os_TE_391997 Chr4 26635096 26635097 + RIREX_LTR 8828 0.0003 (1/2972) 0 * Os_TE_391996 Os_TE_391996 Chr4 26635092 26635091 - RIREX_LTR 8828 0.0003 (1/2969) 0 * Os_TE_391997 Os_TE_391956 Chr4 26628157 26628156 - ORSgTETNOOT02565 240 0.0007 (2/2984) 0 * * Os_TE_391934 Chr4 26618108 26618107 - RETROFIT_LTR 4866 0.0003 (1/2996) 0 * * Os_TE_391927 Chr4 26616748 26616749 - RETROSAT4_LTR 13504 0.0423 (124/2934) 0 * Os_TE_391926 Os_TE_391926 Chr4 26616744 26616743 + RETROSAT4_LTR 13504 0.0535 (159/2971) 0 * Os_TE_391927 Os_TE_391911 Chr4 26614213 26614212 - RIREX_LTR 8828 0.0007 (2/2976) 0 * * Os_TE_391898 Chr4 26597167 26597166 + TRUNCATOR 2918 0.0010 (3/2898) 0 * * Os_TE_391895 Chr4 26596966 26596967 + COPIA2-LTR_OS 6433 0.0011 (3/2698) 0 * * Os_TE_391878 Chr4 26589979 26589980 - ORSiTERT00200154 9386 0.0641 (192/2993) 0 * Os_TE_391877 Os_TE_391877 Chr4 26589973 26589972 + TRUNCATOR 2918 0.0654 (196/2996) 0 * Os_TE_391878 Os_TE_391876 Chr4 26589625 26589626 + RIRE3_LTR 12054 0.0613 (183/2983) 0 * Os_TE_391875 Os_TE_391875 Chr4 26589621 26589620 - RIRE3_LTR 12054 0.0649 (194/2988) 0 * Os_TE_391876 Os_TE_391859 Chr4 26584496 26584497 + RIREX_LTR 8828 0.0654 (196/2997) 0 * * Os_TE_391831 Chr4 26563177 26563178 - ORSgTEMT02400179 221 0.0003 (1/2999) 0 * Os_TE_391830 Os_TE_391830 Chr4 26563176 26563175 - TYPEM 227 0.0003 (1/2999) 0 * Os_TE_391831 Os_TE_391800 Chr4 26550257 26550258 - SZ-48LTR 3632 0.0719 (208/2891) 0 * Os_TE_391799 Os_TE_391799 Chr4 26550253 26550252 + SZ-48LTR 3632 0.0654 (186/2843) 0 * Os_TE_391800 Os_TE_391783 Chr4 26547311 26547310 - ORSgTEMT00501511 150 0.0014 (4/2946) 0 * * Os_TE_391781 Chr4 26546959 26546960 - TELIA 141 0.0003 (1/2953) 0 * Os_TE_391780 Os_TE_391780 Chr4 26546951 26546950 + TELIA 141 0.0003 (1/2955) 0 * Os_TE_391781 Os_TE_391771 Chr4 26536179 26536180 + HARB-1_OS 5166 0.0003 (1/2988) 0 * Os_TE_391770 Os_TE_391770 Chr4 26536177 26536176 - HARB-1_OS 5166 0.0003 (1/2991) 0 * Os_TE_391771 Os_TE_391716 Chr4 26517240 26517241 + MPING 430 0.0007 (2/2990) 0 * Os_TE_391715 Os_TE_391715 Chr4 26517238 26517237 - MPING 430 0.0007 (2/2988) 0 * Os_TE_391716 Os_TE_391711 Chr4 26516092 26516093 + RIREX_LTR 8828 0.0007 (2/2987) 0 * Os_TE_391710 Os_TE_391710 Chr4 26516088 26516087 - RIREX_LTR 8828 0.0007 (2/2987) 0 * Os_TE_391711 Os_TE_391694 Chr4 26510648 26510649 - COPIA2-LTR_OS 6433 0.0023 (7/2998) 0 * * Os_TE_391688 Chr4 26503023 26503024 + SZ-55_LTR 10318 0.0007 (2/2999) 0 * Os_TE_391687 Os_TE_391687 Chr4 26503019 26503018 - SZ-55_LTR 10318 0.0007 (2/2999) 0 * Os_TE_391688 Os_TE_391654 Chr4 26486248 26486249 - SC-3_LTR 5748 0.0040 (12/2986) 0 * Os_TE_391653 Os_TE_391653 Chr4 26486244 26486243 + ORSiTERTOOT00296 5553 0.0040 (12/2990) 0 * Os_TE_391654 Os_TE_391651 Chr4 26483579 26483580 - OSTE24 683 0.0007 (2/2745) 0 * * Os_TE_391630 Chr4 26474751 26474752 - DS-RICE2N 613 0.0003 (1/2996) 0 * Os_TE_391629 Os_TE_391629 Chr4 26474744 26474743 + DS-RICE2N 613 0.0003 (1/2995) 0 * Os_TE_391630 Os_TE_391617 Chr4 26470938 26470939 - SZ-22_LTR 4403 0.0003 (1/2882) 0 * Os_TE_391616 Os_TE_391616 Chr4 26470934 26470933 + ORSiTERTOOT00226 792 0.0003 (1/2885) 0 * Os_TE_391617 Os_TE_391615 Chr4 26470924 26470925 - RETROSAT2LTR 12796 0.0007 (2/2871) 0 * * Os_TE_391569 Chr4 26461543 26461544 - COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_391568 Os_TE_391568 Chr4 26461539 26461538 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_391569 Os_TE_391551 Chr4 26454891 26454892 - STOWAWAY51_OS 246 0.0003 (1/2946) 0 * * Os_TE_391549 Chr4 26454101 26454102 - COPI2_LTR 4733 0.0005 (1/2167) 0 * Os_TE_391548 Os_TE_391548 Chr4 26454097 26454096 + COPI2_LTR 4733 0.0005 (1/2173) 0 * Os_TE_391549 Os_TE_391538 Chr4 26450139 26450140 - ORSiTERTOOT00074 4935 0.0007 (2/2941) 0 * Os_TE_391537 Os_TE_391537 Chr4 26450135 26450134 + ORSiTERTOOT00074 4935 0.0007 (2/2949) 0 * Os_TE_391538 Os_TE_391516 Chr4 26444757 26444758 + COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * * Os_TE_391501 Chr4 26441076 26441075 - STOWAWAY44_OS 240 0.0003 (1/2983) 0 * Os_TE_391500 Os_TE_391500 Chr4 26441073 26441074 + STOWAWAY44_OS 240 0.0003 (1/2981) 0 * Os_TE_391501 Os_TE_391470 Chr4 26424504 26424505 - SZ-22_LTR 4403 0.0003 (1/2964) 0 * Os_TE_391469 Os_TE_391469 Chr4 26424500 26424499 + ORSiTERTOOT00226 792 0.0003 (1/2972) 0 * Os_TE_391470 Os_TE_391467 Chr4 26424129 26424128 + HARB-1_OS 5166 0.0003 (1/2925) 0 * * Os_TE_391466 Chr4 26424125 26424126 + HARB-1_OS 5166 0.0003 (1/2924) 0 * Os_TE_391465 Os_TE_391465 Chr4 26424123 26424122 - HARB-1_OS 5166 0.0003 (1/2918) 0 * Os_TE_391466 Os_TE_391419 Chr4 26376504 26376505 + SC-3_LTR 5748 0.0003 (1/2993) 0 * Os_TE_391418 Os_TE_391418 Chr4 26376500 26376499 - SC-3_LTR 5748 0.0003 (1/2995) 0 * Os_TE_391419 Os_TE_391408 Chr4 26370574 26370575 + TWIFBIG 3567 0.0150 (45/2991) 0 * Os_TE_391407 Os_TE_391407 Chr4 26370567 26370566 - ORSiTETNOOT00216 3569 0.0157 (47/2995) 0 * Os_TE_391408 Os_TE_391402 Chr4 26361996 26361997 + COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_391401 Os_TE_391401 Chr4 26361992 26361991 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_391402 Os_TE_391363 Chr4 26351002 26351003 + ORSgTERTOOT00009 12852 0.0010 (3/2995) 0 * Os_TE_391362 Os_TE_391362 Chr4 26350998 26350997 - RETRO2_LTR 12874 0.0010 (3/2997) 0 * Os_TE_391363 Os_TE_391361 Chr4 26350629 26350630 + SZ-9LTR 965 0.0010 (3/2987) 0 * Os_TE_391360 Os_TE_391360 Chr4 26350625 26350624 - SZ-9LTR 965 0.0010 (3/2988) 0 * Os_TE_391361 Os_TE_391357 Chr4 26346364 26346365 + COPIA2-LTR_OS 6433 0.0003 (1/2973) 0 * Os_TE_391356 Os_TE_391356 Chr4 26346360 26346359 - COPIA2-LTR_OS 6433 0.0003 (1/2975) 0 * Os_TE_391357 Os_TE_391323 Chr4 26339759 26339758 + ORSiTETN00100018 738 0.0010 (3/2971) 0 * Os_TE_391322 Os_TE_391322 Chr4 26339758 26339759 + DS-RICE4N 715 0.0010 (3/2962) 0 * Os_TE_391323 Os_TE_391295 Chr4 26321192 26321193 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * * Os_TE_391253 Chr4 26298671 26298670 - STOWAWAY51_OS 246 0.0007 (2/2992) 0 * Os_TE_391252 Os_TE_391252 Chr4 26298665 26298666 + STOWAWAY51_OS 246 0.0007 (2/2993) 0 * Os_TE_391253 Os_TE_391242 Chr4 26294648 26294649 - SZ-22_LTR 4403 0.0003 (1/2984) 0 * * Os_TE_391224 Chr4 26291043 26291042 + ORSgTETNOOT00908 242 0.0007 (2/2998) 0 * * Os_TE_391213 Chr4 26285946 26285945 - ORSgTEMT00900099 250 0.0020 (6/2995) 0 * * Os_TE_391181 Chr4 26264735 26264736 + COPIA2-LTR_OS 6433 0.0007 (2/2979) 0 * Os_TE_391180 Os_TE_391180 Chr4 26264731 26264730 - COPIA2-LTR_OS 6433 0.0010 (3/2988) 0 * Os_TE_391181 Os_TE_391165 Chr4 26257247 26257246 - SC-3_LTR 5748 0.0003 (1/2990) 0 * * Os_TE_391148 Chr4 26245637 26245638 + COPIA2-LTR_OS 6433 0.0003 (1/2983) 0 * Os_TE_391147 Os_TE_391147 Chr4 26245633 26245632 - COPIA2-LTR_OS 6433 0.0007 (2/2987) 0 * Os_TE_391148 Os_TE_391101 Chr4 26220911 26220910 - SZ-35LTR 3853 0.0007 (2/2992) 0 * * Os_TE_391047 Chr4 26201920 26201919 - STOWAWAY51_OS 246 0.0003 (1/2996) 0 * Os_TE_391046 Os_TE_391046 Chr4 26201917 26201918 - STOWAWAY51_OS 246 0.0003 (1/2991) 0 * Os_TE_391047 Os_TE_391041 Chr4 26198458 26198459 + OSTONOR1_LTR 6440 0.0007 (2/2999) 0 * Os_TE_391040 Os_TE_391040 Chr4 26198454 26198453 - OSTONOR1_LTR 6440 0.0007 (2/2999) 0 * Os_TE_391041 Os_TE_391006 Chr4 26187642 26187643 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_391005 Os_TE_391005 Chr4 26187638 26187637 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_391006 Os_TE_390958 Chr4 26156804 26156805 - SC-3_LTR 5748 0.0020 (6/2996) 0 * Os_TE_390957 Os_TE_390957 Chr4 26156800 26156799 + SC-3_LTR 5748 0.0020 (6/2997) 0 * Os_TE_390958 Os_TE_390949 Chr4 26153487 26153488 + INDITTO 263 0.0007 (2/2963) 0 * Os_TE_390948 Os_TE_390948 Chr4 26153485 26153484 - INDITTO 263 0.0007 (2/2972) 0 * Os_TE_390949 Os_TE_390907 Chr4 26144790 26144791 + NDNA1TNA_OS 334 0.0014 (4/2880) 0 * Os_TE_390906 Os_TE_390906 Chr4 26144788 26144787 - NDNA1TNA_OS 334 0.0014 (4/2864) 0 * Os_TE_390907 Os_TE_390896 Chr4 26142215 26142216 + ORSiTERTOOT00074 4935 0.0020 (6/2976) 0 * Os_TE_390895 Os_TE_390895 Chr4 26142211 26142210 - ORSiTERTOOT00074 4935 0.0020 (6/2982) 0 * Os_TE_390896 Os_TE_390851 Chr4 26130293 26130294 - SZ-67LTR 1540 0.0007 (2/2932) 0 * Os_TE_390850 Os_TE_390850 Chr4 26130289 26130288 + SZ-67LTR 1540 0.0010 (3/2937) 0 * Os_TE_390851 Os_TE_390828 Chr4 26123162 26123163 - MuDR3_OS 8604 0.0013 (4/2985) 0 * Os_TE_390827 Os_TE_390827 Chr4 26123154 26123153 - MuDR3_OS 8604 0.0013 (4/2986) 0 * Os_TE_390828 Os_TE_390808 Chr4 26112650 26112651 - MDR1 7383 0.0003 (1/2980) 0 * * Os_TE_390760 Chr4 26074225 26074226 - COPIA2-LTR_OS 6433 0.0007 (2/2996) 0 * * Os_TE_390757 Chr4 26073639 26073640 + COPI2_LTR 4733 0.0007 (2/2982) 0 * Os_TE_390756 Os_TE_390756 Chr4 26073635 26073634 - COPI2_LTR 4733 0.0007 (2/2984) 0 * Os_TE_390757 Os_TE_390720 Chr4 26042790 26042791 + OSTONOR1_LTR 6440 0.0013 (4/2997) 0 * Os_TE_390719 Os_TE_390719 Chr4 26042786 26042785 - OSTONOR1_LTR 6440 0.0013 (4/2998) 0 * Os_TE_390720 Os_TE_390708 Chr4 26038724 26038725 + ORSiTERTOOT00296 5553 0.0003 (1/2997) 0 * Os_TE_390707 Os_TE_390707 Chr4 26038720 26038719 - SC-3_LTR 5748 0.0003 (1/2995) 0 * Os_TE_390708 Os_TE_390703 Chr4 26035594 26035593 + MPING 430 0.0003 (1/2980) 0 * * Os_TE_390626 Chr4 25994067 25994068 - MPING 430 0.0003 (1/2968) 0 * Os_TE_390625 Os_TE_390625 Chr4 25994065 25994064 + MPING 430 0.0003 (1/2981) 0 * Os_TE_390626 Os_TE_390624 Chr4 25992548 25992547 + STOWAWAY51_OS 246 0.0017 (5/2989) 0 * Os_TE_390623 Os_TE_390623 Chr4 25992542 25992543 + ORSgTEMT01601591 242 0.0017 (5/2991) 0 * Os_TE_390624 Os_TE_390595 Chr4 25962585 25962586 - RIREX_LTR 8828 0.0010 (3/2990) 0 * Os_TE_390594 Os_TE_390594 Chr4 25962581 25962580 + RIREX_LTR 8828 0.0010 (3/2992) 0 * Os_TE_390595 Os_TE_390568 Chr4 25950852 25950853 - OSTE24 683 0.0154 (43/2799) 0 * * Os_TE_390526 Chr4 25933667 25933668 + SC-8_LTR 4951 0.0003 (1/2983) 0 * Os_TE_390525 Os_TE_390525 Chr4 25933663 25933662 - SC-8_LTR 4951 0.0003 (1/2981) 0 * Os_TE_390526 Os_TE_390493 Chr4 25916286 25916287 + INDITTO 263 0.0003 (1/2993) 0 * Os_TE_390492 Os_TE_390492 Chr4 25916284 25916283 - INDITTO 263 0.0003 (1/2992) 0 * Os_TE_390493 Os_TE_390390 Chr4 25871028 25871027 + ORSgTETNOOT00012 241 0.0003 (1/2914) 0 * * Os_TE_390379 Chr4 25861999 25861998 + OSTE33 1012 0.0023 (7/2988) 0 * * Os_TE_390374 Chr4 25860067 25860068 + TWIF 586 0.0003 (1/2916) 0 * Os_TE_390373 Os_TE_390373 Chr4 25860060 25860059 - ORSiTETNOOT00134 607 0.0003 (1/2920) 0 * Os_TE_390374 Os_TE_390357 Chr4 25851569 25851570 - TRUNCATOR2_LTR 2904 0.0344 (103/2998) 0 * Os_TE_390356 Os_TE_390356 Chr4 25851565 25851564 + ORSiCMCM00100019 2717 0.0295 (88/2986) 0 * Os_TE_390357 Os_TE_390350 Chr4 25848277 25848276 + COPI2_LTR 4733 0.0010 (3/2982) 0 * * Os_TE_390323 Chr4 25828584 25828585 - STOWAWAY11_OS 292 0.0003 (1/2990) 0 * * Os_TE_390231 Chr4 25791788 25791789 + OLO24 345 0.0010 (3/2954) 0 * * Os_TE_390221 Chr4 25783704 25783705 + CACTA-I 1124 0.0020 (6/2987) 0 * Os_TE_390220 Os_TE_390220 Chr4 25783702 25783701 - CACTA-I 1124 0.0020 (6/2991) 0 * Os_TE_390221 Os_TE_390206 Chr4 25773281 25773282 - COPIA2-LTR_OS 6433 0.0010 (3/2975) 0 * * Os_TE_390202 Chr4 25771548 25771547 - TRUNCATOR 2918 0.0020 (6/2992) 0 * Os_TE_390200 Os_TE_390200 Chr4 25771531 25771532 - RETROSAT4_LTR 13504 0.0020 (6/2992) 0 * Os_TE_390202 Os_TE_390160 Chr4 25759614 25759615 + SPMLIKE 10989 0.0324 (97/2998) 0 * Os_TE_390159 Os_TE_390159 Chr4 25759612 25759611 - ORSgTETN00200001 10994 0.0327 (98/2999) 0 * Os_TE_390160 Os_TE_390145 Chr4 25750481 25750482 + COPIA2-LTR_OS 6433 0.0003 (1/2986) 0 * Os_TE_390144 Os_TE_390144 Chr4 25750477 25750476 - COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_390145 Os_TE_390137 Chr4 25746181 25746182 + DS-RICE2N 613 0.0020 (6/2986) 0 * Os_TE_390136 Os_TE_390136 Chr4 25746174 25746173 - DS-RICE2N 613 0.0020 (6/2985) 0 * Os_TE_390137 Os_TE_390129 Chr4 25735533 25744110 - MuDR2_OS 6770 0.8792 (2510/2855) 1 Intact * Os_TE_390028 Chr4 25687538 25687539 - AMYLTP 383 0.0740 (201/2715) 0 * Os_TE_390027 Os_TE_390027 Chr4 25687530 25687529 + AMYLTP 383 0.0724 (197/2722) 0 * Os_TE_390028 Os_TE_390026 Chr4 25686419 25686420 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_390025 Os_TE_390025 Chr4 25686415 25686414 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_390026 Os_TE_390010 Chr4 25679173 25651663 + RETROSAT4_LTR 13504 0.8560 (1992/2327) 1 Intact Os_TE_390004 Os_TE_390004 Chr4 25675230 25679173 - SZ-35LTR 3853 0.8814 (2631/2985) 1 Intact Os_TE_390010 Os_TE_389997 Chr4 25671801 25671802 + ORSiTERTOOT00097 759 0.0020 (6/2977) 0 * Os_TE_389996 Os_TE_389996 Chr4 25671797 25671796 - SZ-22_LTR 4403 0.0023 (7/2979) 0 * Os_TE_389997 Os_TE_389953 Chr4 25657177 25657176 - MPING 430 0.0004 (1/2828) 0 * * Os_TE_389941 Chr4 25656456 25656455 + ORSgTEMT00901230 241 0.0003 (1/2976) 0 * * Os_TE_389934 Chr4 25655550 25651663 - SZ-35LTR 3853 0.8883 (2625/2955) 1 Intact Os_TE_389930 Os_TE_389930 Chr4 25651663 25679173 + RETROSAT4_LTR 13504 0.8724 (2468/2829) 1 Intact Os_TE_389934 Os_TE_389893 Chr4 25636931 25636932 + ORSgTEMT00300069 394 0.0021 (6/2836) 0 * * Os_TE_389892 Chr4 25635463 25635464 + SC-8_LTR 4951 0.0003 (1/2999) 0 * Os_TE_389891 Os_TE_389891 Chr4 25635459 25635458 - SC-8_LTR 4951 0.0003 (1/2999) 0 * Os_TE_389892 Os_TE_389887 Chr4 25630381 25630382 - RIREX_LTR 8828 0.0010 (3/2997) 0 * Os_TE_389886 Os_TE_389886 Chr4 25630377 25630376 + RIREX_LTR 8828 0.0010 (3/2997) 0 * Os_TE_389887 Os_TE_389866 Chr4 25618313 25618314 + INDITTO 263 0.0040 (12/2996) 0 * Os_TE_389865 Os_TE_389865 Chr4 25618311 25618310 - INDITTO 263 0.0040 (12/2993) 0 * Os_TE_389866 Os_TE_389696 Chr4 25516871 25516870 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * * Os_TE_389664 Chr4 25506502 25506501 - TELIA 141 0.0003 (1/2994) 0 * Os_TE_389663 Os_TE_389663 Chr4 25506491 25506492 + TELIA 141 0.0003 (1/2992) 0 * Os_TE_389664 Os_TE_389652 Chr4 25499840 25499841 - COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_389651 Os_TE_389651 Chr4 25499836 25499835 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_389652 Os_TE_389642 Chr4 25494689 25493725 - SZ-9LTR 965 0.8874 (2649/2985) 1 Intact Os_TE_389641 Os_TE_389641 Chr4 25493724 25494689 + SZ-9LTR 965 0.8892 (2664/2996) 1 Intact Os_TE_389642 Os_TE_389610 Chr4 25479331 25479330 + COPI1_LTR 4721 0.0003 (1/2975) 0 * * Os_TE_389604 Chr4 25477560 25477559 + ORSgTEMT01600726 235 0.0003 (1/2966) 0 * * Os_TE_389601 Chr4 25477266 25477267 - DS-RICE2N 613 0.0831 (247/2972) 0 * Os_TE_389600 Os_TE_389600 Chr4 25477259 25477258 + DS-RICE2N 613 0.0849 (252/2968) 0 * Os_TE_389601 Os_TE_389516 Chr4 25448881 25448882 - STOWAWAY51_OS 246 0.0003 (1/2991) 0 * * Os_TE_389501 Chr4 25447578 25447577 + ORSgTETNOOT00908 242 0.0003 (1/2998) 0 * * Os_TE_389457 Chr4 25432641 25432640 - STOWAWAY51_OS 246 0.0003 (1/2981) 0 * Os_TE_389456 Os_TE_389456 Chr4 25432635 25432636 + STOWAWAY51_OS 246 0.0003 (1/2980) 0 * Os_TE_389457 Os_TE_389455 Chr4 25432026 25432025 - STOWAWAY44_OS 240 0.0010 (3/2991) 0 * Os_TE_389454 Os_TE_389454 Chr4 25432023 25432024 + STOWAWAY44_OS 240 0.0010 (3/2990) 0 * Os_TE_389455 Os_TE_389447 Chr4 25429515 25429516 + INDITTO 263 0.0041 (12/2928) 0 * * Os_TE_389414 Chr4 25412973 25412972 - RIREX_LTR 8828 0.0017 (5/2996) 0 * * Os_TE_389411 Chr4 25411832 25411831 - STOWAWAY43_OS 233 0.0004 (1/2775) 0 * * Os_TE_389402 Chr4 25408286 25408287 - COPI2_LTR 4733 0.0003 (1/2979) 0 * Os_TE_389401 Os_TE_389401 Chr4 25408282 25408281 + COPI2_LTR 4733 0.0003 (1/2981) 0 * Os_TE_389402 Os_TE_389399 Chr4 25407715 25407716 + MPING 430 0.0003 (1/2988) 0 * Os_TE_389398 Os_TE_389398 Chr4 25407713 25407712 - MPING 430 0.0003 (1/2991) 0 * Os_TE_389399 Os_TE_389387 Chr4 25397013 25397014 + TWIFB1 3737 0.0004 (1/2604) 0 * Os_TE_389386 Os_TE_389386 Chr4 25396998 25396997 + TWIFB1 3737 0.0023 (6/2591) 0 * Os_TE_389387 Os_TE_389369 Chr4 25380526 25380527 + SZ-54A_LTR 5249 0.0017 (5/2986) 0 * Os_TE_389368 Os_TE_389368 Chr4 25380522 25380521 - SZ-54A_LTR 5249 0.0017 (5/2989) 0 * Os_TE_389369 Os_TE_389354 Chr4 25370691 25370692 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * * Os_TE_389318 Chr4 25349515 25349516 + CASTAWAY 364 0.0013 (4/2965) 0 * Os_TE_389317 Os_TE_389317 Chr4 25349513 25349512 - CASTAWAY 364 0.0013 (4/2967) 0 * Os_TE_389318 Os_TE_389306 Chr4 25339045 25339046 + SC-8_LTR 4951 0.0017 (5/2996) 0 * Os_TE_389305 Os_TE_389305 Chr4 25339041 25339040 - SC-8_LTR 4951 0.0017 (5/2996) 0 * Os_TE_389306 Os_TE_389285 Chr4 25321441 25321440 + ORSgTETNOOT00032 218 0.6001 (1780/2966) 0 * * Os_TE_389284 Chr4 25320931 25320930 + STOWAWAY51_OS 246 0.0507 (152/2996) 0 * Os_TE_389283 Os_TE_389283 Chr4 25320925 25320926 + ORSgTEMT01601591 242 0.0504 (151/2997) 0 * Os_TE_389284 Os_TE_389279 Chr4 25318336 25318337 + TOS17LTR 138 0.0003 (1/2988) 0 * Os_TE_389278 Os_TE_389278 Chr4 25318332 25318331 - TOS17LTR 138 0.0003 (1/2991) 0 * Os_TE_389279 Os_TE_389275 Chr4 25317388 25317387 - ORSgTERT00200842 1080 0.0007 (2/2986) 0 * * Os_TE_389267 Chr4 25311822 25311821 + ORSgTEMT01601122 212 0.0895 (267/2984) 0 * * Os_TE_389229 Chr4 25281018 25281019 + ORSgTETNOOT01834 251 0.0167 (50/2986) 0 * Os_TE_389228 Os_TE_389228 Chr4 25281016 25281015 + ORSgTETNOOT01834 251 0.0164 (49/2988) 0 * Os_TE_389229 Os_TE_389219 Chr4 25279190 25279191 + ORSgTEMT01601591 242 0.0003 (1/2993) 0 * * Os_TE_389200 Chr4 25273791 25273792 + ORSiTERTOOT00226 792 0.0010 (3/2889) 0 * Os_TE_389199 Os_TE_389199 Chr4 25273787 25273786 - SZ-22_LTR 4403 0.0010 (3/2883) 0 * Os_TE_389200 Os_TE_389177 Chr4 25267668 25261693 + RETRO2A_LTR 12895 0.3163 (940/2972) 1 Intact Os_TE_389171 Os_TE_389171 Chr4 25261693 25267668 - RETRO1_LTR 8314 0.3125 (930/2976) 1 Intact Os_TE_389177 Os_TE_389170 Chr4 25261596 25261595 - AMYLTP 383 0.0003 (1/2973) 0 * Os_TE_389169 Os_TE_389169 Chr4 25261579 25261580 + AMYLTP 383 0.0003 (1/2941) 0 * Os_TE_389170 Os_TE_389168 Chr4 25261506 25261507 + OSTE33 1012 0.0848 (253/2985) 0 * Os_TE_389167 Os_TE_389167 Chr4 25261497 25261496 + OSTE33 1012 0.0781 (232/2969) 0 * Os_TE_389168 Os_TE_389161 Chr4 25259903 25259902 - STOWAWAY51_OS 246 0.0010 (3/2976) 0 * Os_TE_389160 Os_TE_389160 Chr4 25259897 25259898 + STOWAWAY51_OS 246 0.0010 (3/2980) 0 * Os_TE_389161 Os_TE_389148 Chr4 25253459 25253460 + OSTE33 1012 0.0017 (5/2992) 0 * Os_TE_389147 Os_TE_389147 Chr4 25253450 25253449 + OSTE33 1012 0.0017 (5/2995) 0 * Os_TE_389148 Os_TE_389146 Chr4 25251263 25251264 + RETRO2A_LTR 12895 0.0020 (6/2999) 0 * Os_TE_389145 Os_TE_389145 Chr4 25251259 25251258 - RETRO1_LTR 8314 0.0020 (6/2998) 0 * Os_TE_389146 Os_TE_389128 Chr4 25249075 25249076 + F770 284 0.3449 (1027/2978) 0 * Os_TE_389127 Os_TE_389127 Chr4 25249073 25249072 - F770 284 0.3444 (1026/2979) 0 * Os_TE_389128 Os_TE_389125 Chr4 25248213 25248214 - ORSgTETNOOT00053 263 0.0020 (6/2995) 0 * Os_TE_389124 Os_TE_389124 Chr4 25248211 25248210 + ORSgTETNOOT00221 261 0.0020 (6/2997) 0 * Os_TE_389125 Os_TE_389122 Chr4 25247214 25247215 + ID-4 284 0.0013 (4/2992) 0 * Os_TE_389121 Os_TE_389121 Chr4 25247208 25247207 + ORSgTEMT04600037 279 0.0017 (5/2989) 0 * Os_TE_389122 Os_TE_389118 Chr4 25246723 25246724 - ORSiTETNOOT00134 607 0.0098 (29/2970) 0 * Os_TE_389117 Os_TE_389117 Chr4 25246716 25246715 + TWIF 586 0.0108 (32/2976) 0 * Os_TE_389118 Os_TE_389075 Chr4 25230755 25230756 + RIREX_LTR 8828 0.0007 (2/2957) 0 * Os_TE_389074 Os_TE_389074 Chr4 25230751 25230750 - RIREX_LTR 8828 0.0007 (2/2963) 0 * Os_TE_389075 Os_TE_389071 Chr4 25229259 25229260 - RIREX_LTR 8828 0.0037 (11/2951) 0 * Os_TE_389070 Os_TE_389070 Chr4 25229255 25229254 + RIREX_LTR 8828 0.0041 (12/2949) 0 * Os_TE_389071 Os_TE_389062 Chr4 25225130 25225131 + ORSiTERTOOT00226 792 0.0003 (1/2989) 0 * * Os_TE_389033 Chr4 25213896 25213897 + SZ-9LTR 965 0.3495 (1046/2993) 0 * Os_TE_389032 Os_TE_389032 Chr4 25213892 25213891 - SZ-9LTR 965 0.3504 (1049/2994) 0 * Os_TE_389033 Os_TE_389029 Chr4 25212902 25212903 - SC-3_LTR 5748 0.0027 (8/2984) 0 * Os_TE_389028 Os_TE_389028 Chr4 25212898 25212897 + ORSiTERTOOT00296 5553 0.0027 (8/2987) 0 * Os_TE_389029 Os_TE_389005 Chr4 25206381 25206380 - ORSiTERT00100062 5674 0.0833 (248/2978) 0 * * Os_TE_388987 Chr4 25202886 25202887 - NDNA1TNA_OS 334 0.0007 (2/2904) 0 * * Os_TE_388977 Chr4 25201646 25201647 - AMYLTP 383 0.0017 (5/2959) 0 * Os_TE_388976 Os_TE_388976 Chr4 25201638 25201637 + AMYLTP 383 0.0013 (4/2963) 0 * Os_TE_388977 Os_TE_388975 Chr4 25201143 25201144 - DNAUN1_OS 408 0.0003 (1/2894) 0 * * Os_TE_388973 Chr4 25199709 25199710 + SC-8_LTR 4951 0.0007 (2/2995) 0 * Os_TE_388972 Os_TE_388972 Chr4 25199705 25199704 - SC-8_LTR 4951 0.0007 (2/2994) 0 * Os_TE_388973 Os_TE_388956 Chr4 25191621 25191620 - ORSgTEMT00700002 381 0.0003 (1/2990) 0 * * Os_TE_388954 Chr4 25190220 25190221 - SC-8_LTR 4951 0.0003 (1/2995) 0 * Os_TE_388953 Os_TE_388953 Chr4 25190216 25190215 + SC-8_LTR 4951 0.0003 (1/2998) 0 * Os_TE_388954 Os_TE_388917 Chr4 25165553 25165552 + ORSgTEMT01601122 212 0.5159 (1297/2514) 0 * Os_TE_388916 Os_TE_388916 Chr4 25165550 25165551 + ORSgTEMT01601122 212 0.5951 (1746/2934) 0 * Os_TE_388917 Os_TE_388883 Chr4 25146114 25146115 - SC-3_LTR 5748 0.0003 (1/2965) 0 * Os_TE_388882 Os_TE_388882 Chr4 25146110 25146109 + ORSiTERTOOT00296 5553 0.0003 (1/2974) 0 * Os_TE_388883 Os_TE_388822 Chr4 25122796 25122795 + NDNA1TNA_OS 334 0.0003 (1/2994) 0 * * Os_TE_388818 Chr4 25119075 25119076 + TWIFB1 3737 0.0015 (4/2744) 0 * * Os_TE_388814 Chr4 25117133 25117132 + SZ-40LTR 2465 0.6142 (1815/2955) 0 * * Os_TE_388801 Chr4 25109298 25109299 - MPING 430 0.0144 (43/2982) 0 * Os_TE_388800 Os_TE_388800 Chr4 25109296 25109295 + MPING 430 0.0148 (44/2980) 0 * Os_TE_388801 Os_TE_388769 Chr4 25095246 25098480 + ORSiTERTOOT00028 8600 0.4179 (1166/2790) 1 Intact * Os_TE_388768 Chr4 25095073 25095074 + COPI2_LTR 4733 0.0003 (1/2881) 0 * * Os_TE_388767 Chr4 25093925 25093924 - CENTRE 280 0.0007 (2/2995) 0 * * Os_TE_388722 Chr4 25070176 25070177 - RETROSAT2LTR 12796 0.0003 (1/2968) 0 * * Os_TE_388710 Chr4 25065366 25065367 + ORSgTETNOOT01686 252 0.0003 (1/2992) 0 * Os_TE_388709 Os_TE_388709 Chr4 25065362 25065361 + ORSgTETNOOT01531 255 0.0003 (1/2991) 0 * Os_TE_388710 Os_TE_388708 Chr4 25065238 25065239 + TOS17LTR 138 0.0007 (2/2991) 0 * Os_TE_388707 Os_TE_388707 Chr4 25065234 25065233 - TOS17LTR 138 0.0007 (2/2989) 0 * Os_TE_388708 Os_TE_388695 Chr4 25048523 25048522 + ORSgTERT00201086 9728 0.0007 (2/2950) 0 * * Os_TE_388693 Chr4 25046064 25046063 + OSTE20 496 0.0093 (26/2787) 0 * * Os_TE_388681 Chr4 25035165 25035164 + RIREX_LTR 8828 0.0003 (1/2995) 0 * * Os_TE_388676 Chr4 25032391 25032392 - COPIA2-LTR_OS 6433 0.0044 (13/2985) 0 * Os_TE_388675 Os_TE_388675 Chr4 25032387 25032386 + COPIA2-LTR_OS 6433 0.0044 (13/2985) 0 * Os_TE_388676 Os_TE_388671 Chr4 25031216 25031217 - COPI2_LTR 4733 0.0003 (1/2968) 0 * Os_TE_388670 Os_TE_388670 Chr4 25031212 25031211 + COPI2_LTR 4733 0.0003 (1/2973) 0 * Os_TE_388671 Os_TE_388653 Chr4 25017208 25017207 - ORSiTETNOOT00216 3569 0.0003 (1/2969) 0 * * Os_TE_388646 Chr4 25010808 25010809 + ORSiTERTOOT00350 5275 0.0013 (4/2983) 0 * Os_TE_388645 Os_TE_388645 Chr4 25010804 25010803 - ORSiTERTOOT00350 5275 0.0013 (4/2981) 0 * Os_TE_388646 Os_TE_388628 Chr4 25000551 25000552 + ORSgTETNOOT01834 251 0.0003 (1/2983) 0 * Os_TE_388627 Os_TE_388627 Chr4 25000549 25000548 + ORSgTETNOOT01834 251 0.0003 (1/2988) 0 * Os_TE_388628 Os_TE_388622 Chr4 24992096 24992095 - COPIA2-LTR_OS 6433 0.0004 (1/2857) 0 * * Os_TE_388616 Chr4 24989944 24989945 - ORSgTEMT02900151 307 0.0855 (256/2994) 0 * * Os_TE_388615 Chr4 24989717 24989718 + MPING 430 0.0003 (1/2981) 0 * Os_TE_388614 Os_TE_388614 Chr4 24989715 24989714 - MPING 430 0.0003 (1/2982) 0 * Os_TE_388615 Os_TE_388611 Chr4 24989388 24989387 - ORSgTEMT00500401 153 0.0828 (247/2984) 0 * Os_TE_388610 Os_TE_388610 Chr4 24989386 24989387 + ORSgTEMT00501601 153 0.0758 (225/2967) 0 * Os_TE_388611 Os_TE_388609 Chr4 24989350 24989349 - ORSgTEMT01400015 213 0.0662 (195/2944) 0 * * Os_TE_388583 Chr4 24978488 24978489 - MPING 430 0.0004 (1/2710) 0 * Os_TE_388582 Os_TE_388582 Chr4 24978486 24978485 + MPING 430 0.0003 (1/2938) 0 * Os_TE_388583 Os_TE_388579 Chr4 24972575 24972576 - AMYLTP 383 0.0010 (3/2970) 0 * Os_TE_388578 Os_TE_388578 Chr4 24972567 24972566 + AMYLTP 383 0.0010 (3/2970) 0 * Os_TE_388579 Os_TE_388567 Chr4 24968839 24968838 - ORSgTETNOOT01930 140 0.1831 (270/1475) 0 * * Os_TE_388555 Chr4 24962871 24962872 - NDNA2TNA_OS 346 0.0003 (1/2975) 0 * * Os_TE_388542 Chr4 24958436 24958437 - ORSgTETNOOT00544 147 0.6176 (1838/2976) 0 * Os_TE_388541 Os_TE_388541 Chr4 24958433 24958432 + ORSgTETNOOT00707 140 0.6120 (1801/2943) 0 * Os_TE_388542 Os_TE_388527 Chr4 24950399 24950400 - SC-8_LTR 4951 0.0007 (2/2897) 0 * Os_TE_388526 Os_TE_388526 Chr4 24950395 24950394 + SC-8_LTR 4951 0.0003 (1/2888) 0 * Os_TE_388527 Os_TE_388508 Chr4 24931336 24931549 - ORSgTEMT01400023 211 0.3950 (1149/2909) 1 Intact * Os_TE_388507 Chr4 24931277 24931276 - ORSgTEMT00500081 146 0.6127 (1791/2923) 0 * * Os_TE_388489 Chr4 24923496 24923497 - ORSgTEMT01600639 228 0.5994 (1746/2913) 0 * * Os_TE_388486 Chr4 24920499 24920500 + ORSgTETNOOT00908 242 0.0010 (3/2995) 0 * * Os_TE_388472 Chr4 24907651 24907650 + RPO_OS 1983 0.0017 (5/2974) 0 * * Os_TE_388458 Chr4 24904026 24904027 - CLOUD-4 520 0.0017 (5/2981) 0 * * Os_TE_388430 Chr4 24896432 24896431 + ORSiTERTOOT00226 792 0.0003 (1/2990) 0 * * Os_TE_388389 Chr4 24877222 24876992 + ORSgTETNOOT01219 231 0.3760 (1127/2997) 1 Intact Os_TE_388388 Os_TE_388388 Chr4 24876988 24877222 + ORSgTETNOOT00908 242 0.3738 (1118/2991) 1 Intact Os_TE_388389 Os_TE_388385 Chr4 24875280 24875281 + ORSgTETNOOT02577 232 0.0003 (1/2998) 0 * Os_TE_388384 Os_TE_388384 Chr4 24875279 24875278 + ORSgTETNOOT00792 273 0.0003 (1/2995) 0 * Os_TE_388385 Os_TE_388352 Chr4 24862501 24862500 + OSTE33 1012 0.0003 (1/2976) 0 * * Os_TE_388332 Chr4 24858081 24858082 - TYPEU1 380 0.0267 (60/2250) 0 * Os_TE_388331 Os_TE_388331 Chr4 24858073 24858072 + TYPEU4 402 0.0208 (62/2985) 0 * Os_TE_388332 Os_TE_388275 Chr4 24828520 24828521 + ORSgTEMT01400009 212 0.0030 (9/2951) 0 * * Os_TE_388267 Chr4 24826688 24826687 + ORSgTETNOOT01834 251 0.0501 (149/2973) 0 * * Os_TE_388263 Chr4 24826189 24826190 + TELIA 141 0.0211 (63/2990) 0 * * Os_TE_388250 Chr4 24817648 24817647 - GYPSY-A_LTR 8951 0.0003 (1/2991) 0 * * Os_TE_388232 Chr4 24812068 24812069 - ORSgTEMT02400179 221 0.0007 (2/2995) 0 * Os_TE_388231 Os_TE_388231 Chr4 24812067 24812066 - TYPEM 227 0.0007 (2/2992) 0 * Os_TE_388232 Os_TE_388230 Chr4 24811725 24811724 - STOWAWAY51_OS 246 0.0003 (1/2970) 0 * * Os_TE_388212 Chr4 24808731 24808732 - RIRE2_LTR 11306 0.0003 (1/2981) 0 * Os_TE_388211 Os_TE_388211 Chr4 24808727 24808726 + RIRE2_LTR 11306 0.0003 (1/2980) 0 * Os_TE_388212 Os_TE_388204 Chr4 24803488 24803489 + HARB-1_OS 5166 0.0003 (1/2974) 0 * Os_TE_388203 Os_TE_388203 Chr4 24803486 24803485 - HARB-1_OS 5166 0.0003 (1/2979) 0 * Os_TE_388204 Os_TE_388192 Chr4 24800785 24800786 + ORSiTERTOOT00296 5553 0.0003 (1/2992) 0 * Os_TE_388191 Os_TE_388191 Chr4 24800781 24800780 - SC-3_LTR 5748 0.0003 (1/2996) 0 * Os_TE_388192 Os_TE_388183 Chr4 24787396 24795004 - MuDR4_OS 7610 0.3126 (851/2722) 1 Intact * Os_TE_388162 Chr4 24783730 24783731 - HATOS1 3488 0.0003 (1/2943) 0 * Os_TE_388161 Os_TE_388161 Chr4 24783723 24783722 + QINNIU 528 0.0003 (1/2949) 0 * Os_TE_388162 Os_TE_388158 Chr4 24782117 24783590 + ORSgTETN00200005 1121 0.3832 (1132/2954) 1 Intact * Os_TE_388113 Chr4 24753915 24753779 + ORSgTEMT01701104 154 0.4848 (1439/2968) 1 Intact * Os_TE_388100 Chr4 24750118 24750119 + RETROSAT4_LTR 13504 0.0796 (237/2977) 0 * Os_TE_388099 Os_TE_388099 Chr4 24750114 24750113 - SZ-35LTR 3853 0.0847 (250/2953) 0 * Os_TE_388100 Os_TE_388097 Chr4 24750039 24750038 - RETRO2_LTR 12874 0.0003 (1/2929) 0 * * Os_TE_388093 Chr4 24749214 24749213 - OSLINE1-2 7128 0.0212 (63/2969) 0 * * Os_TE_388084 Chr4 24744040 24744039 - HARB-1_OS 5166 0.0151 (45/2990) 0 * * Os_TE_388076 Chr4 24742547 24742548 + TELIA 141 0.0003 (1/2996) 0 * Os_TE_388075 Os_TE_388075 Chr4 24742539 24742538 - TELIA 141 0.0003 (1/2996) 0 * Os_TE_388076 Os_TE_388074 Chr4 24740337 24740338 + TWIFB1 3737 0.0003 (1/2998) 0 * * Os_TE_388037 Chr4 24725242 24725243 - OLO24 345 0.0010 (3/2992) 0 * Os_TE_388036 Os_TE_388036 Chr4 24725240 24725239 + OLO24 345 0.0010 (3/2992) 0 * Os_TE_388037 Os_TE_387963 Chr4 24687939 24687938 - ORSgTETNOOT02565 240 0.6305 (1884/2988) 0 * * Os_TE_387961 Chr4 24687452 24687453 + Cassandra_OS-LTR 764 0.0010 (3/2990) 0 * Os_TE_387960 Os_TE_387960 Chr4 24687448 24687447 - Cassandra_OS-LTR 764 0.0010 (3/2987) 0 * Os_TE_387961 Os_TE_387954 Chr4 24686338 24674854 + SPMLIKE 10989 0.3794 (1133/2986) 1 Intact Os_TE_387949 Os_TE_387949 Chr4 24674854 24686338 - ORSgTETN00200001 10994 0.3453 (988/2861) 1 Intact Os_TE_387954 Os_TE_387936 Chr4 24673181 24673180 - NDNA2TNA_OS 346 0.6279 (1871/2980) 0 * Os_TE_387935 Os_TE_387935 Chr4 24673177 24673178 + NDNA2TNA_OS 346 0.5970 (1650/2764) 0 * Os_TE_387936 Os_TE_387916 Chr4 24665216 24665217 + RIRE2_LTR 11306 0.0007 (2/2964) 0 * Os_TE_387915 Os_TE_387915 Chr4 24665212 24665211 - RIRE2_LTR 11306 0.0007 (2/2956) 0 * Os_TE_387916 Os_TE_387910 Chr4 24664322 24664323 - SZ-22_LTR 4403 0.0004 (1/2593) 0 * * Os_TE_387875 Chr4 24656932 24656933 + ORSgTERT00200961 124 0.0014 (4/2863) 0 * * Os_TE_387829 Chr4 24642037 24642036 + AMYLTP 383 0.0007 (2/2906) 0 * * Os_TE_387804 Chr4 24637559 24637558 - OSTE15 1168 0.0003 (1/2907) 0 * * Os_TE_387745 Chr4 24609482 24609481 - RETRO2_LTR 12874 0.0003 (1/2952) 0 * * Os_TE_387742 Chr4 24609125 24609124 - TRUNCATOR 2918 0.0018 (5/2852) 0 * * Os_TE_387716 Chr4 24592258 24592259 - MPING 430 0.0057 (17/2959) 0 * * Os_TE_387714 Chr4 24586731 24586732 + ORSiTERTOOT00296 5553 0.0064 (19/2973) 0 * Os_TE_387713 Os_TE_387713 Chr4 24586727 24586726 - SC-3_LTR 5748 0.0064 (19/2972) 0 * Os_TE_387714 Os_TE_387712 Chr4 24586420 24586419 - CLOUD 734 0.0003 (1/2983) 0 * * Os_TE_387693 Chr4 24576185 24576186 - TRUNCATOR2_LTR 2904 0.6280 (1872/2981) 0 * * Os_TE_387690 Chr4 24575319 24575318 - TRUNCATOR 2918 0.0013 (4/2987) 0 * Os_TE_387689 Os_TE_387689 Chr4 24575318 24575319 + TRUNCATOR 2918 0.0017 (5/2984) 0 * Os_TE_387690 Os_TE_387686 Chr4 24573778 24573779 - TYPEM 227 0.0003 (1/2990) 0 * * Os_TE_387675 Chr4 24571051 24571052 - SZ-48LTR 3632 0.0007 (1/1432) 0 * * Os_TE_387670 Chr4 24564424 24564425 + ORSiTERTOOT00296 5553 0.0003 (1/2974) 0 * Os_TE_387669 Os_TE_387669 Chr4 24564420 24564419 - SC-3_LTR 5748 0.0003 (1/2974) 0 * Os_TE_387670 Os_TE_387648 Chr4 24556948 24556949 + RETRO2_LTR 12874 0.5347 (1601/2994) 0 * Os_TE_387647 Os_TE_387647 Chr4 24556944 24556943 - RETRO2_LTR 12874 0.5272 (1572/2982) 0 * Os_TE_387648 Os_TE_387633 Chr4 24545513 24545512 + ORSgTEMT01601122 212 0.0817 (244/2988) 0 * Os_TE_387632 Os_TE_387632 Chr4 24545510 24545511 + ORSgTEMT01601122 212 0.0826 (247/2991) 0 * Os_TE_387633 Os_TE_387629 Chr4 24538202 24538203 + SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_387628 Os_TE_387628 Chr4 24538198 24538197 - SC-8_LTR 4951 0.0003 (1/2987) 0 * Os_TE_387629 Os_TE_387627 Chr4 24537825 24537826 - F524 291 0.0007 (2/2948) 0 * * Os_TE_387624 Chr4 24536767 24536768 + MERMITEA 1710 0.0017 (5/2977) 0 * Os_TE_387623 Os_TE_387623 Chr4 24536759 24536758 + MERMITEA 1710 0.0017 (5/2978) 0 * Os_TE_387624 Os_TE_387621 Chr4 24536647 24536648 + STOWAWAY51_OS 246 0.0003 (1/2984) 0 * * Os_TE_387613 Chr4 24534402 24534403 + MPING 430 0.0003 (1/2989) 0 * Os_TE_387612 Os_TE_387612 Chr4 24534400 24534399 - MPING 430 0.0003 (1/2990) 0 * Os_TE_387613 Os_TE_387595 Chr4 24523330 24523331 - SZ-35LTR 3853 0.0007 (2/2993) 0 * Os_TE_387594 Os_TE_387594 Chr4 24523326 24523325 + RETROSAT4_LTR 13504 0.0007 (2/2987) 0 * Os_TE_387595 Os_TE_387556 Chr4 24499087 24499088 - MPING 430 0.0003 (1/2992) 0 * * Os_TE_387537 Chr4 24495754 24493810 - MDR2 6967 0.4257 (1249/2934) 1 Intact Os_TE_387536 Os_TE_387536 Chr4 24493810 24495754 + MDR2 6967 0.4299 (1281/2980) 1 Intact Os_TE_387537 Os_TE_387534 Chr4 24491742 24491741 + ORSgTEMT00101674 340 0.5689 (1663/2923) 0 * Os_TE_387533 Os_TE_387533 Chr4 24491741 24491742 + NDNA1TNA_OS 334 0.5804 (1737/2993) 0 * Os_TE_387534 Os_TE_387521 Chr4 24483662 24483663 - TRUNCATOR2_LTR 2904 0.0003 (1/2986) 0 * Os_TE_387520 Os_TE_387520 Chr4 24483658 24483657 + TRUNCATOR2_LTR 2904 0.0003 (1/2988) 0 * Os_TE_387521 Os_TE_387476 Chr4 24462702 24462701 - EnSpm-16_OS 13336 0.0003 (1/2960) 0 * * Os_TE_387446 Chr4 24445360 24445361 - MuDR4_OS 7610 0.0499 (149/2983) 0 * Os_TE_387445 Os_TE_387445 Chr4 24445354 24445353 - MuDR4_OS 7610 0.0500 (149/2981) 0 * Os_TE_387446 Os_TE_387406 Chr4 24429477 24429476 - MERMITE-18 1263 0.0013 (4/2973) 0 * * Os_TE_387373 Chr4 24415930 24415931 + RIREX_LTR 8828 0.0003 (1/2994) 0 * Os_TE_387372 Os_TE_387372 Chr4 24415926 24415925 - RIREX_LTR 8828 0.0003 (1/2992) 0 * Os_TE_387373 Os_TE_387370 Chr4 24415707 24415706 + ORSiTERTOOT00441 4741 0.0003 (1/2967) 0 * * Os_TE_387360 Chr4 24414534 24414533 + STOWAWAY51_OS 246 0.0010 (3/2988) 0 * Os_TE_387359 Os_TE_387359 Chr4 24414528 24414529 + ORSgTEMT01601591 242 0.0010 (3/2990) 0 * Os_TE_387360 Os_TE_387347 Chr4 24410982 24410983 - INDITTO 263 0.0003 (1/2992) 0 * Os_TE_387346 Os_TE_387346 Chr4 24410980 24410979 + INDITTO 263 0.0003 (1/2992) 0 * Os_TE_387347 Os_TE_387344 Chr4 24410766 24410767 - RIRE2_LTR 11306 0.0572 (171/2987) 0 * Os_TE_387343 Os_TE_387343 Chr4 24410762 24410761 - ORSgTERT00201216 11284 0.0582 (174/2989) 0 * Os_TE_387344 Os_TE_387342 Chr4 24410756 24410755 - INDITTO 263 0.0254 (72/2838) 0 * * Os_TE_387314 Chr4 24395923 24395924 + OSTE33 1012 0.0020 (6/2995) 0 * Os_TE_387313 Os_TE_387313 Chr4 24395914 24395913 + OSTE33 1012 0.0020 (6/2995) 0 * Os_TE_387314 Os_TE_387309 Chr4 24393848 24393849 + TWIF 586 0.0003 (1/2993) 0 * Os_TE_387308 Os_TE_387308 Chr4 24393841 24393840 - ORSiTETNOOT00134 607 0.0003 (1/2992) 0 * Os_TE_387309 Os_TE_387291 Chr4 24385045 24385046 - SC-8_LTR 4951 0.0003 (1/2986) 0 * Os_TE_387290 Os_TE_387290 Chr4 24385041 24385040 + SC-8_LTR 4951 0.0003 (1/2978) 0 * Os_TE_387291 Os_TE_387250 Chr4 24362379 24362380 + COPIA2-LTR_OS 6433 0.0013 (4/2997) 0 * Os_TE_387249 Os_TE_387249 Chr4 24362375 24362374 - COPIA2-LTR_OS 6433 0.0017 (5/2997) 0 * Os_TE_387250 Os_TE_387239 Chr4 24355471 24355470 + TWIF 586 0.0003 (1/2947) 0 * * Os_TE_387237 Chr4 24350997 24350996 - INDITTO 263 0.0003 (1/2996) 0 * * Os_TE_387236 Chr4 24350925 24350926 - INDITTO 263 0.0578 (173/2993) 0 * Os_TE_387235 Os_TE_387235 Chr4 24350923 24350922 + INDITTO 263 0.0587 (176/2996) 0 * Os_TE_387236 Os_TE_387232 Chr4 24347780 24347781 - MDR2 6967 0.0004 (1/2686) 0 * * Os_TE_387231 Chr4 24347741 24347742 + F569 228 0.1603 (460/2869) 0 * Os_TE_387230 Os_TE_387230 Chr4 24347739 24347738 - F569 228 0.1497 (427/2852) 0 * Os_TE_387231 Os_TE_387226 Chr4 24343215 24343216 - SC-8_LTR 4951 0.0950 (284/2989) 0 * Os_TE_387225 Os_TE_387225 Chr4 24343211 24343210 + ORSiTERTOOT00381 4988 0.0946 (283/2992) 0 * Os_TE_387226 Os_TE_387221 Chr4 24338604 24338605 + RETROSAT4_LTR 13504 0.3388 (990/2922) 0 * Os_TE_387220 Os_TE_387220 Chr4 24338600 24338599 - RETROSAT4_LTR 13504 0.3611 (1079/2988) 0 * Os_TE_387221 Os_TE_387152 Chr4 24301281 24301282 - ORSgTEMT02400179 221 0.0013 (4/2997) 0 * Os_TE_387151 Os_TE_387151 Chr4 24301280 24301279 - TYPEM 227 0.0017 (5/2998) 0 * Os_TE_387152 Os_TE_387143 Chr4 24295661 24295662 - INDITTO 263 0.0013 (4/2983) 0 * Os_TE_387142 Os_TE_387142 Chr4 24295659 24295658 + INDITTO 263 0.0017 (5/2994) 0 * Os_TE_387143 Os_TE_387113 Chr4 24286340 24286341 - NDNA1TNA_OS 334 0.4345 (1298/2987) 0 * * Os_TE_387102 Chr4 24283492 24283493 - ORSiTERTOOT00367 5639 0.0003 (1/2988) 0 * Os_TE_387101 Os_TE_387101 Chr4 24283488 24283487 + ORSiTERTOOT00367 5639 0.0006 (1/1689) 0 * Os_TE_387102 Os_TE_387093 Chr4 24275576 24275577 - RETRO2_LTR 12874 0.0890 (253/2842) 0 * * Os_TE_387061 Chr4 24256102 24256103 - SC-3_LTR 5748 0.0003 (1/2988) 0 * Os_TE_387060 Os_TE_387060 Chr4 24256098 24256097 + ORSiTERTOOT00296 5553 0.0003 (1/2988) 0 * Os_TE_387061 Os_TE_387051 Chr4 24250927 24250928 + COPIA2-LTR_OS 6433 0.0003 (1/2978) 0 * Os_TE_387050 Os_TE_387050 Chr4 24250923 24250922 - COPIA2-LTR_OS 6433 0.0003 (1/2975) 0 * Os_TE_387051 Os_TE_387040 Chr4 24249665 24249666 + ORSgTETNOOT02316 263 0.3816 (1143/2995) 0 * Os_TE_387039 Os_TE_387039 Chr4 24249663 24249662 - INDITTO 263 0.3845 (1138/2960) 0 * Os_TE_387040 Os_TE_387037 Chr4 24249377 24249376 - INDITTO 263 0.0017 (5/2994) 0 * * Os_TE_387036 Chr4 24249344 24249345 - INDITTO 263 0.0017 (5/2996) 0 * Os_TE_387035 Os_TE_387035 Chr4 24249342 24249341 + INDITTO 263 0.0017 (5/2996) 0 * Os_TE_387036 Os_TE_387033 Chr4 24249270 24249271 + TREP219 104 0.0017 (5/2999) 0 * * Os_TE_386974 Chr4 24216824 24216825 - SZ-40LTR 2465 0.0262 (78/2972) 0 * Os_TE_386973 Os_TE_386973 Chr4 24216820 24216819 + GYPSY-A_LTR 8951 0.0259 (77/2971) 0 * Os_TE_386974 Os_TE_386971 Chr4 24215221 24215222 + RETROSAT2LTR 12796 0.0041 (12/2946) 0 * Os_TE_386970 Os_TE_386970 Chr4 24215219 24215218 - RETROSAT2LTR 12796 0.0044 (13/2962) 0 * Os_TE_386971 Os_TE_386968 Chr4 24213861 24213860 - ORSgTETNOOT01930 140 0.0010 (3/2988) 0 * * Os_TE_386942 Chr4 24204710 24204711 - RIREX_LTR 8828 0.0014 (4/2878) 0 * Os_TE_386941 Os_TE_386941 Chr4 24204706 24204705 + RIREX_LTR 8828 0.0017 (5/2873) 0 * Os_TE_386942 Os_TE_386931 Chr4 24202232 24202233 + RIREX_LTR 8828 0.0013 (4/2967) 0 * * Os_TE_386924 Chr4 24198473 24198596 + SINE1OS 127 0.5707 (1658/2905) 1 Intact * Os_TE_386905 Chr4 24189409 24189410 + RETROFIT6_LTR 4799 0.0261 (76/2914) 0 * Os_TE_386904 Os_TE_386904 Chr4 24189405 24189404 - RETROFIT6_LTR 4799 0.0268 (78/2913) 0 * Os_TE_386905 Os_TE_386902 Chr4 24189261 24189260 - SZ-22_LTR 4403 0.0007 (2/2894) 0 * * Os_TE_386877 Chr4 24179266 24179265 - ORSgTEMT02400179 221 0.0018 (5/2808) 0 * * Os_TE_386875 Chr4 24179046 24179045 - ORSiTETNOOT00134 607 0.0025 (5/2034) 0 * * Os_TE_386866 Chr4 24174631 24174632 - COPIA2-LTR_OS 6433 0.0017 (5/2929) 0 * Os_TE_386865 Os_TE_386865 Chr4 24174627 24174626 + COPIA2-LTR_OS 6433 0.0017 (5/2926) 0 * Os_TE_386866 Os_TE_386839 Chr4 24157515 24157514 - NDNA1TNA_OS 334 0.0004 (1/2780) 0 * * Os_TE_386838 Chr4 24156519 24156520 + DS-RICE3N 525 0.0007 (2/2953) 0 * * Os_TE_386830 Chr4 24156089 24156090 - TESS 244 0.0037 (11/2970) 0 * Os_TE_386829 Os_TE_386829 Chr4 24156082 24156081 + TESS 244 0.0034 (10/2974) 0 * Os_TE_386830 Os_TE_386781 Chr4 24142643 24142644 + CASTAWAY 364 0.0146 (43/2942) 0 * * Os_TE_386778 Chr4 24140935 24140934 - LINE-7_OS 7090 0.0003 (1/2938) 0 * * Os_TE_386749 Chr4 24127713 24127714 + MPING 430 0.0015 (3/1986) 0 * Os_TE_386748 Os_TE_386748 Chr4 24127711 24127710 - MPING 430 0.0010 (3/2989) 0 * Os_TE_386749 Os_TE_386736 Chr4 24126764 24126765 - MPING 430 0.0013 (4/2969) 0 * Os_TE_386735 Os_TE_386735 Chr4 24126762 24126761 + MPING 430 0.0017 (5/2967) 0 * Os_TE_386736 Os_TE_386734 Chr4 24126647 24126648 - ORSgTETNOOT02417 265 0.1593 (477/2994) 0 * Os_TE_386733 Os_TE_386733 Chr4 24126645 24126644 - INDITTO 263 0.1575 (471/2991) 0 * Os_TE_386734 Os_TE_386723 Chr4 24124508 24124509 + MPING 430 0.0003 (1/2998) 0 * Os_TE_386722 Os_TE_386722 Chr4 24124506 24124505 - MPING 430 0.0003 (1/2999) 0 * Os_TE_386723 Os_TE_386721 Chr4 24123209 24123210 + ORSgTETNOOT00908 242 0.0280 (84/2996) 0 * * Os_TE_386720 Chr4 24123118 24123117 + SEVERIN-2 1952 0.0003 (1/2985) 0 * * Os_TE_386698 Chr4 24114418 24114419 - COPI2_LTR 4733 0.0003 (1/2997) 0 * Os_TE_386697 Os_TE_386697 Chr4 24114414 24114413 + COPI2_LTR 4733 0.0003 (1/2997) 0 * Os_TE_386698 Os_TE_386672 Chr4 24108980 24108981 + TNR2A 152 0.4559 (1327/2911) 0 * Os_TE_386671 Os_TE_386671 Chr4 24108974 24108973 - TNR2A 152 0.4585 (1337/2916) 0 * Os_TE_386672 Os_TE_386662 Chr4 24103848 24103849 + ORSgTEMT00600124 361 0.0017 (5/2991) 0 * Os_TE_386661 Os_TE_386661 Chr4 24103846 24103845 + CASTAWAY 364 0.0017 (5/2992) 0 * Os_TE_386662 Os_TE_386633 Chr4 24091404 24091405 + SEVERIN-2 1952 0.0017 (5/2989) 0 * * Os_TE_386627 Chr4 24087115 24087116 + ORSgTERT00200961 124 0.0006 (1/1707) 0 * * Os_TE_386622 Chr4 24085482 24085483 + RETRO2_LTR 12874 0.1740 (519/2982) 0 * * Os_TE_386618 Chr4 24085268 24085269 + GYPSY-A_LTR 8951 0.0003 (1/2978) 0 * * Os_TE_386616 Chr4 24085104 24085105 - RETRO2_LTR 12874 0.3752 (1123/2993) 0 * Os_TE_386615 Os_TE_386615 Chr4 24085100 24085099 + RETRO2_LTR 12874 0.3691 (1102/2986) 0 * Os_TE_386616 Os_TE_386614 Chr4 24084723 24084724 - RIREX_LTR 8828 0.0017 (5/2997) 0 * Os_TE_386613 Os_TE_386613 Chr4 24084719 24084718 + RIREX_LTR 8828 0.0017 (5/2998) 0 * Os_TE_386614 Os_TE_386612 Chr4 24084484 24084485 + ORSgTEMT00600576 351 0.1711 (513/2998) 0 * Os_TE_386611 Os_TE_386611 Chr4 24084481 24084480 + ORSgTEMT00600272 361 0.1731 (519/2999) 0 * Os_TE_386612 Os_TE_386607 Chr4 24082560 24082561 - SZ-55_LTR 10318 0.0003 (1/2989) 0 * Os_TE_386606 Os_TE_386606 Chr4 24082556 24082555 + SZ-55_LTR 10318 0.0008 (1/1205) 0 * Os_TE_386607 Os_TE_386596 Chr4 24080897 24080898 + COWARD-3 221 0.6231 (1863/2990) 0 * * Os_TE_386594 Chr4 24080513 24080514 + RIREX_LTR 8828 0.0003 (1/2994) 0 * Os_TE_386593 Os_TE_386593 Chr4 24080509 24080508 - RIREX_LTR 8828 0.0003 (1/2996) 0 * Os_TE_386594 Os_TE_386588 Chr4 24075293 24075292 + STOWAWAY51_OS 246 0.0020 (6/2992) 0 * Os_TE_386587 Os_TE_386587 Chr4 24075287 24075288 + ORSgTEMT01601591 242 0.0017 (5/2993) 0 * Os_TE_386588 Os_TE_386573 Chr4 24072324 24072323 - COPI2_LTR 4733 0.0007 (2/2869) 0 * * Os_TE_386568 Chr4 24065626 24065625 - COPI2_LTR 4733 0.0003 (1/2998) 0 * * Os_TE_386564 Chr4 24061924 24061925 - RIREX_LTR 8828 0.0003 (1/2988) 0 * Os_TE_386563 Os_TE_386563 Chr4 24061920 24061919 + RIREX_LTR 8828 0.0003 (1/2986) 0 * Os_TE_386564 Os_TE_386561 Chr4 24061894 24061893 + COPI2_LTR 4733 0.0003 (1/2987) 0 * * Os_TE_386542 Chr4 24054044 24054045 + UNIQUE 158 0.1882 (564/2997) 0 * * Os_TE_386540 Chr4 24052651 24052652 + ORSgTEMT00500498 155 0.0020 (5/2479) 0 * Os_TE_386539 Os_TE_386539 Chr4 24052650 24052649 - GAIJIN 147 0.0020 (5/2475) 0 * Os_TE_386540 Os_TE_386527 Chr4 24048757 24048756 + ORSgTETNOOT01930 140 0.1902 (569/2992) 0 * Os_TE_386526 Os_TE_386526 Chr4 24048739 24048740 - ORSgTETNOOT00998 140 0.1897 (566/2983) 0 * Os_TE_386527 Os_TE_386507 Chr4 24045259 24045626 + ORSgTEMT03000039 377 0.8230 (2450/2977) 1 Intact * Os_TE_386506 Chr4 24044370 24044371 + OLO24 345 0.1880 (563/2995) 0 * * Os_TE_386501 Chr4 24041715 24036516 + OSR3_LTR 5201 0.4752 (1104/2323) 1 Intact Os_TE_386500 Os_TE_386500 Chr4 24036516 24041715 - OSR3_LTR 5201 0.4775 (1178/2467) 1 Intact Os_TE_386501 Os_TE_386495 Chr4 24033747 24033748 + COPI2_LTR 4733 0.0017 (5/2991) 0 * Os_TE_386494 Os_TE_386494 Chr4 24033743 24033742 - COPI2_LTR 4733 0.0017 (5/2988) 0 * Os_TE_386495 Os_TE_386479 Chr4 24019236 24019235 - SC-8_LTR 4951 0.0003 (1/2961) 0 * * Os_TE_386477 Chr4 24018162 24018163 + MPING 430 0.0003 (1/2994) 0 * Os_TE_386476 Os_TE_386476 Chr4 24018160 24018159 - MPING 430 0.0004 (1/2691) 0 * Os_TE_386477 Os_TE_386475 Chr4 24017719 24017720 + RIREX_LTR 8828 0.0017 (5/2992) 0 * Os_TE_386474 Os_TE_386474 Chr4 24017715 24017714 - RIREX_LTR 8828 0.0013 (4/2991) 0 * Os_TE_386475 Os_TE_386447 Chr4 24002899 24002898 - ORSgTEMT01602467 227 0.0017 (5/2989) 0 * Os_TE_386446 Os_TE_386446 Chr4 24002896 24002897 + TREP215 239 0.0010 (3/2960) 0 * Os_TE_386447 Os_TE_386443 Chr4 24000326 24000327 + CASTAWAY 364 0.0010 (3/2997) 0 * Os_TE_386442 Os_TE_386442 Chr4 24000324 24000323 - ORSgTEMT00600085 364 0.0010 (3/2996) 0 * Os_TE_386443 Os_TE_386440 Chr4 23999712 23999711 - ORSgTEMT01600639 228 0.4349 (1277/2936) 0 * * Os_TE_386439 Chr4 23999254 23999253 - AMYLTP 383 0.0010 (3/2962) 0 * Os_TE_386438 Os_TE_386438 Chr4 23999229 23999230 + AMYLTP 383 0.0010 (3/2972) 0 * Os_TE_386439 Os_TE_386404 Chr4 23981662 23979546 - MERMITED 1572 0.5647 (1688/2989) 1 Intact * Os_TE_386387 Chr4 23974382 23974715 + COWARD-3 221 0.5619 (1651/2938) 1 Intact * Os_TE_386381 Chr4 23973586 23973585 - ORSgTEMT01700299 212 0.4299 (1245/2896) 0 * Os_TE_386380 Os_TE_386380 Chr4 23973583 23973584 - ORSgTEMT01701617 154 0.4484 (1335/2977) 0 * Os_TE_386381 Os_TE_386375 Chr4 23969019 23969020 + ORSgTETNOOT01139 147 0.0007 (2/2990) 0 * * Os_TE_386374 Chr4 23968820 23968819 + ORSgTEMT00500201 140 0.4533 (1355/2989) 0 * Os_TE_386373 Os_TE_386373 Chr4 23968819 23968820 - ORSgTETNOOT00118 134 0.4500 (1345/2989) 0 * Os_TE_386374 Os_TE_386372 Chr4 23965070 23965071 - SC-8_LTR 4951 0.0003 (1/2987) 0 * * Os_TE_386364 Chr4 23958476 23958475 + ORSgTEMT01700513 151 0.4478 (1338/2988) 0 * * Os_TE_386361 Chr4 23956973 23956868 - TNR2A 152 0.5653 (1693/2995) 1 Intact * Os_TE_386318 Chr4 23946068 23946067 + SZ-40LTR 2465 0.0336 (58/1726) 0 * * Os_TE_386271 Chr4 23920498 23920499 + ORSiTERTOOT00226 792 0.0017 (3/1721) 0 * * Os_TE_386268 Chr4 23914989 23914988 + ORSgTEMT01701171 147 0.4070 (1156/2840) 0 * Os_TE_386267 Os_TE_386267 Chr4 23914986 23914987 - ORSgTEMT01701254 154 0.4447 (1324/2977) 0 * Os_TE_386268 Os_TE_386266 Chr4 23914255 23914256 + NDNA1TNA_OS 334 0.4283 (1239/2893) 0 * * Os_TE_386257 Chr4 23909164 23907555 - SZ-30_LTR 6377 0.5709 (1698/2974) 1 Intact Os_TE_386251 Os_TE_386251 Chr4 23907555 23909164 + SZ-30_LTR 6377 0.5678 (1695/2985) 1 Intact Os_TE_386257 Os_TE_386249 Chr4 23906627 23906628 + OSTE9 421 0.0004 (1/2625) 0 * Os_TE_386248 Os_TE_386248 Chr4 23906623 23906622 - OSTE9 421 0.0013 (4/2973) 0 * Os_TE_386249 Os_TE_386245 Chr4 23906380 23906572 + EXPLORER 210 0.5644 (1688/2991) 1 Intact * Os_TE_386244 Chr4 23905976 23905975 - ORSgTEMT01602413 239 0.0017 (5/2994) 0 * Os_TE_386243 Os_TE_386243 Chr4 23905973 23905974 - ORSgTEMT01602413 239 0.0013 (4/2990) 0 * Os_TE_386244 Os_TE_386242 Chr4 23905624 23905625 + ORSgTEMT01400031 216 0.0757 (220/2905) 0 * Os_TE_386241 Os_TE_386241 Chr4 23905623 23905622 - ORSgTEMT01400014 209 0.1056 (316/2993) 0 * Os_TE_386242 Os_TE_386236 Chr4 23901678 23901679 + COPIA3-LTR_OS 5061 0.0303 (84/2775) 0 * Os_TE_386235 Os_TE_386235 Chr4 23901674 23901673 - COPIA3-LTR_OS 5061 0.1083 (324/2993) 0 * Os_TE_386236 Os_TE_386219 Chr4 23892217 23892218 + DITAILA 257 0.0013 (4/2994) 0 * * Os_TE_386218 Chr4 23892165 23892164 - ORSgTEMT00900145 249 0.0013 (4/2991) 0 * Os_TE_386217 Os_TE_386217 Chr4 23892163 23892164 - ORSgTEMT00901345 248 0.0013 (4/2989) 0 * Os_TE_386218 Os_TE_386209 Chr4 23891198 23891199 + AMYLTP 383 0.5130 (1518/2959) 0 * * Os_TE_386208 Chr4 23891190 23891189 - AMYLTP 383 0.6143 (1808/2943) 0 * * Os_TE_386207 Chr4 23890521 23890522 - DS-RICE2N 613 0.0013 (4/2997) 0 * Os_TE_386206 Os_TE_386206 Chr4 23890514 23890513 + DS-RICE4N 715 0.0017 (5/2997) 0 * Os_TE_386207 Os_TE_386202 Chr4 23887774 23887775 + COPI2_LTR 4733 0.0010 (3/2998) 0 * Os_TE_386201 Os_TE_386201 Chr4 23887770 23887769 - COPI2_LTR 4733 0.0013 (4/2999) 0 * Os_TE_386202 Os_TE_386188 Chr4 23880607 23880606 + STOWAWAY21_OS 243 0.6017 (1725/2867) 0 * * Os_TE_386185 Chr4 23880251 23880099 + ORSgTEMT00500010 153 0.4202 (1179/2806) 1 Intact * Os_TE_386176 Chr4 23875034 23874681 - ORSgTEMT00600524 364 0.5972 (1170/1959) 1 Intact * Os_TE_386169 Chr4 23873762 23874042 - ORSgTEMT00100287 316 0.3978 (1178/2961) 1 Intact * Os_TE_386166 Chr4 23872547 23872546 + ORSgTEMT00101674 340 0.6045 (1758/2908) 0 * * Os_TE_386160 Chr4 23863499 23863498 - ORSgTEMT00901269 237 0.5976 (1715/2870) 0 * Os_TE_386159 Os_TE_386159 Chr4 23863491 23863492 - ORSgTEMT00901388 250 0.6214 (1861/2995) 0 * Os_TE_386160 Os_TE_386155 Chr4 23862472 23862471 - ORSgTEMT01400019 216 0.1630 (234/1436) 0 * Os_TE_386154 Os_TE_386154 Chr4 23862459 23862460 + ORSgTEMT01400032 215 0.6124 (1814/2962) 0 * Os_TE_386155 Os_TE_386153 Chr4 23862035 23862036 - SC-8_LTR 4951 0.0007 (2/2980) 0 * Os_TE_386152 Os_TE_386152 Chr4 23862031 23862030 + SC-8_LTR 4951 0.0016 (2/1215) 0 * Os_TE_386153 Os_TE_386138 Chr4 23855677 23856338 + TWIFB1 3737 0.6434 (1086/1688) 1 Intact * Os_TE_386128 Chr4 23848037 23848038 - F1275 157 0.0013 (4/2976) 0 * * Os_TE_386119 Chr4 23841985 23841986 + DASIA-2 1198 0.0013 (4/2997) 0 * Os_TE_386118 Os_TE_386118 Chr4 23841977 23841976 + DASIA-2 1198 0.0013 (4/2998) 0 * Os_TE_386119 Os_TE_386117 Chr4 23841830 23841831 - ORSgTEMT00700002 381 0.0003 (1/2997) 0 * Os_TE_386116 Os_TE_386116 Chr4 23841825 23841824 + STOWAWAY51_OS 246 0.0003 (1/2998) 0 * Os_TE_386117 Os_TE_386115 Chr4 23841743 23841744 + OLO24 345 0.0003 (1/2996) 0 * Os_TE_386114 Os_TE_386114 Chr4 23841741 23841740 - OLO24 345 0.0003 (1/2995) 0 * Os_TE_386115 Os_TE_386113 Chr4 23841444 23841443 + EnSpm-10_OS 11265 0.0010 (3/2998) 0 * * Os_TE_386111 Chr4 23840715 23840714 - STOWAWAY11_OS 292 0.0017 (5/2932) 0 * * Os_TE_386110 Chr4 23840633 23840632 - ORSgTEMT01701182 145 0.0007 (2/2923) 0 * * Os_TE_386109 Chr4 23840431 23840430 + STOWAWAY51_OS 246 0.0055 (16/2897) 0 * Os_TE_386108 Os_TE_386108 Chr4 23840425 23840426 + ORSgTEMT01601591 242 0.0058 (17/2908) 0 * Os_TE_386109 Os_TE_386096 Chr4 23835636 23835637 + OLO24 345 0.0652 (195/2991) 0 * Os_TE_386095 Os_TE_386095 Chr4 23835634 23835633 - OLO24 345 0.0655 (196/2991) 0 * Os_TE_386096 Os_TE_386093 Chr4 23834797 23834798 + OSTE20 496 0.0010 (3/2996) 0 * Os_TE_386092 Os_TE_386092 Chr4 23834793 23834792 + OSTE20 496 0.0010 (3/2994) 0 * Os_TE_386093 Os_TE_386091 Chr4 23834002 23834003 + SC-7_LTR 4431 0.0003 (1/2985) 0 * Os_TE_386090 Os_TE_386090 Chr4 23833998 23833997 - SC-7_LTR 4431 0.0003 (1/2983) 0 * Os_TE_386091 Os_TE_386072 Chr4 23823978 23823020 + COPIA2-LTR_OS 6433 0.4087 (1140/2789) 1 Solo_LTR Os_TE_386071 Os_TE_386071 Chr4 23823020 23823977 - COPIA2-LTR_OS 6433 0.3917 (1170/2987) 1 Solo_LTR Os_TE_386072 Os_TE_386024 Chr4 23795555 23795556 + ORSgTETNOOT00032 218 0.0010 (3/2892) 0 * * Os_TE_386004 Chr4 23789225 23789226 - RETRO2_LTR 12874 0.0013 (4/2985) 0 * Os_TE_386003 Os_TE_386003 Chr4 23789221 23789220 + RETRO2_LTR 12874 0.0013 (4/2985) 0 * Os_TE_386004 Os_TE_385991 Chr4 23787386 23787387 - COPIA2-LTR_OS 6433 0.0003 (1/2968) 0 * Os_TE_385990 Os_TE_385990 Chr4 23787382 23787381 + COPIA2-LTR_OS 6433 0.0003 (1/2972) 0 * Os_TE_385991 Os_TE_385987 Chr4 23778379 23778380 + OsSN3 183 0.0023 (7/2989) 0 * * Os_TE_385957 Chr4 23767151 23767152 + SC-8_LTR 4951 0.0003 (1/2997) 0 * Os_TE_385956 Os_TE_385956 Chr4 23767147 23767146 - SC-8_LTR 4951 0.0003 (1/2998) 0 * Os_TE_385957 Os_TE_385952 Chr4 23762443 23762442 - ORSgTEMT00500095 150 0.0013 (4/2968) 0 * * Os_TE_385948 Chr4 23761744 23761743 - ORSgTEMT00500578 129 0.0010 (3/2988) 0 * * Os_TE_385947 Chr4 23761556 23761557 - RIRE2_LTR 11306 0.0010 (3/2992) 0 * Os_TE_385946 Os_TE_385946 Chr4 23761552 23761551 + RIRE2_LTR 11306 0.0010 (3/2984) 0 * Os_TE_385947 Os_TE_385937 Chr4 23761013 23761012 - ORSgTEMT00500589 151 0.0017 (5/2967) 0 * * Os_TE_385908 Chr4 23749589 23749590 + SC-8_LTR 4951 0.0003 (1/2996) 0 * Os_TE_385907 Os_TE_385907 Chr4 23749585 23749584 - SC-8_LTR 4951 0.0003 (1/2995) 0 * Os_TE_385908 Os_TE_385905 Chr4 23749330 23749329 + TREP219 104 0.0020 (6/2987) 0 * * Os_TE_385900 Chr4 23746027 23746028 + ORSgTEMT00300063 413 0.0017 (5/2945) 0 * * Os_TE_385891 Chr4 23744267 23744268 - COPIA2-LTR_OS 6433 0.0003 (1/2964) 0 * Os_TE_385890 Os_TE_385890 Chr4 23744263 23744262 + COPIA2-LTR_OS 6433 0.0003 (1/2966) 0 * Os_TE_385891 Os_TE_385889 Chr4 23743818 23742848 + COPIA2-LTR_OS 6433 0.4101 (1221/2977) 1 Solo_LTR Os_TE_385888 Os_TE_385888 Chr4 23742860 23743818 - COPIA2-LTR_OS 6433 0.4137 (1230/2973) 1 Solo_LTR Os_TE_385889 Os_TE_385876 Chr4 23742124 23742123 - ORSgTEMT00500321 149 0.0027 (8/2971) 0 * * Os_TE_385845 Chr4 23727266 23727267 + ORSgTETNOOT01930 140 0.0017 (5/2959) 0 * Os_TE_385844 Os_TE_385844 Chr4 23727264 23727263 - ORSgTETNOOT01930 140 0.0024 (7/2926) 0 * Os_TE_385845 Os_TE_385843 Chr4 23727036 23727037 - INDITTO 263 0.0115 (34/2961) 0 * Os_TE_385842 Os_TE_385842 Chr4 23727034 23727033 + INDITTO 263 0.0118 (35/2968) 0 * Os_TE_385843 Os_TE_385817 Chr4 23714983 23714982 - MERMITE18B 1306 0.0010 (3/2978) 0 * * Os_TE_385815 Chr4 23714746 23714747 - NDNA1TNA_OS 334 0.0003 (1/2944) 0 * * Os_TE_385811 Chr4 23714303 23714302 - RETRO1_LTR 8314 0.0024 (7/2909) 0 * * Os_TE_385806 Chr4 23713628 23713629 + RIREX_LTR 8828 0.0010 (3/2991) 0 * * Os_TE_385805 Chr4 23713500 23713499 + OSTE18 129 0.0017 (5/2994) 0 * * Os_TE_385794 Chr4 23710056 23710057 + GYPSY-A_LTR 8951 0.0012 (3/2474) 0 * * Os_TE_385791 Chr4 23709749 23709748 + TNR9 176 0.0007 (2/2953) 0 * * Os_TE_385783 Chr4 23698814 23698813 - TYPEM 227 0.0050 (15/2996) 0 * Os_TE_385782 Os_TE_385782 Chr4 23698810 23698811 - ORSgTEMT02400179 221 0.0053 (16/2997) 0 * Os_TE_385783 Os_TE_385730 Chr4 23636529 23636530 - SZ-22_LTR 4403 0.0007 (2/2979) 0 * Os_TE_385729 Os_TE_385729 Chr4 23636525 23636524 + ORSiTERTOOT00034 791 0.0007 (2/2980) 0 * Os_TE_385730 Os_TE_385723 Chr4 23631948 23631949 + TWIFB1 3737 0.0017 (5/2903) 0 * * Os_TE_385706 Chr4 23624721 23624869 + TREP220 109 0.4253 (1259/2960) 1 Intact * Os_TE_385703 Chr4 23621370 23621371 - TELIA 141 0.0033 (10/2991) 0 * * Os_TE_385700 Chr4 23618731 23618732 - SC-3_LTR 5748 0.0003 (1/2991) 0 * Os_TE_385699 Os_TE_385699 Chr4 23618727 23618726 + ORSiTERTOOT00296 5553 0.0003 (1/2989) 0 * Os_TE_385700 Os_TE_385678 Chr4 23609810 23609811 - SZ-37_LTR 12001 0.0003 (1/2995) 0 * * Os_TE_385641 Chr4 23603533 23603534 + KIDDOB 280 0.5889 (1758/2985) 0 * * Os_TE_385636 Chr4 23600530 23600529 + COPIA2-LTR_OS 6433 0.0010 (3/2873) 0 * * Os_TE_385621 Chr4 23595724 23595725 - F524 291 0.0014 (4/2957) 0 * * Os_TE_385594 Chr4 23589302 23589303 + ORSgTETN00100092 209 0.0003 (1/2914) 0 * * Os_TE_385573 Chr4 23579045 23579046 + TELIA 141 0.0004 (1/2797) 0 * * Os_TE_385538 Chr4 23571891 23571890 + ENSPM4_OS 11610 0.0011 (3/2736) 0 * * Os_TE_385527 Chr4 23571278 23571277 + NDNA1TNA_OS 334 0.5186 (1507/2906) 0 * * Os_TE_385478 Chr4 23549014 23549015 + INDITTO 263 0.8723 (1605/1840) -1 * Os_TE_385477 Os_TE_385477 Chr4 23549012 23549011 - INDITTO 263 0.8712 (1596/1832) -1 * Os_TE_385478 Os_TE_385471 Chr4 23547128 23547127 - TRUNCATOR2_LTR 2904 0.0003 (1/2967) 0 * * Os_TE_385469 Chr4 23543367 23543368 - SZ-35LTR 3853 0.0017 (5/2917) 0 * Os_TE_385468 Os_TE_385468 Chr4 23543363 23543362 + RETROSAT4_LTR 13504 0.0007 (2/2911) 0 * Os_TE_385469 Os_TE_385452 Chr4 23533095 23533094 + ORSgTETNOOT00908 242 0.0003 (1/2974) 0 * * Os_TE_385447 Chr4 23529875 23529876 - NDNA1TNA_OS 334 0.0003 (1/2991) 0 * Os_TE_385446 Os_TE_385446 Chr4 23529874 23529873 + NDNA1TNA_OS 334 0.0003 (1/2990) 0 * Os_TE_385447 Os_TE_385445 Chr4 23529756 23529757 - HARB-1_OS 5166 0.0017 (4/2368) 0 * * Os_TE_385429 Chr4 23523554 23523555 - F569 228 0.0007 (2/2995) 0 * Os_TE_385428 Os_TE_385428 Chr4 23523552 23523551 + F569 228 0.0007 (2/2996) 0 * Os_TE_385429 Os_TE_385425 Chr4 23521859 23521860 - CENTRE 280 0.0003 (1/2984) 0 * * Os_TE_385417 Chr4 23515880 23515879 + COPI2_LTR 4733 0.0003 (1/2996) 0 * * Os_TE_385412 Chr4 23508586 23508587 - ORSiTETNOOT00209 3624 0.0003 (1/2999) 0 * Os_TE_385410 Os_TE_385410 Chr4 23508579 23508578 + TWIFBIG 3567 0.0003 (1/2999) 0 * Os_TE_385412 Os_TE_385376 Chr4 23491669 23491668 - STOWAWAY51_OS 246 0.0003 (1/2991) 0 * Os_TE_385375 Os_TE_385375 Chr4 23491663 23491664 + STOWAWAY51_OS 246 0.0003 (1/2987) 0 * Os_TE_385376 Os_TE_385374 Chr4 23490382 23489210 - CACTA-M 1129 0.5454 (1634/2996) 1 Intact Os_TE_385372 Os_TE_385372 Chr4 23489207 23490382 + CACTA-B 1103 0.5395 (1611/2986) 1 Intact Os_TE_385374 Os_TE_385357 Chr4 23485749 23485750 + STOWAWAY51_OS 246 0.0003 (1/2968) 0 * * Os_TE_385332 Chr4 23479614 23481108 + OSTE33 1012 0.5504 (1612/2929) 1 Intact * Os_TE_385329 Chr4 23478218 23478219 - CACTA-H 1152 0.0007 (2/2949) 0 * Os_TE_385328 Os_TE_385328 Chr4 23478216 23478215 + CACTA-H 1152 0.0007 (2/2937) 0 * Os_TE_385329 Os_TE_385325 Chr4 23477896 23477897 + ORSgTEMT01601591 242 0.0009 (1/1158) -1 * * Os_TE_385324 Chr4 23475680 23475681 + MPING 430 0.0007 (2/2977) 0 * Os_TE_385323 Os_TE_385323 Chr4 23475678 23475677 - MPING 430 0.0007 (2/2974) 0 * Os_TE_385324 Os_TE_385322 Chr4 23475488 23475487 - STOWAWAY51_OS 246 0.0003 (1/2955) 0 * Os_TE_385321 Os_TE_385321 Chr4 23475482 23475483 + STOWAWAY51_OS 246 0.0003 (1/2947) 0 * Os_TE_385322 Os_TE_385299 Chr4 23472054 23472055 - ORSgTEMT02400179 221 0.0003 (1/2976) 0 * Os_TE_385298 Os_TE_385298 Chr4 23472053 23472052 - TYPEM 227 0.0003 (1/2965) 0 * Os_TE_385299 Os_TE_385291 Chr4 23457365 23444484 + RETRO2A_LTR 12895 0.7098 (2113/2977) 1 Intact * Os_TE_385279 Chr4 23444497 23444498 - RIRE3_LTR 12054 0.0004 (1/2467) 0 * * Os_TE_385278 Chr4 23444484 23457365 - RETRO2_LTR 12874 0.7089 (2106/2971) 1 Intact * Os_TE_385263 Chr4 23442420 23442419 - STOWAWAY51_OS 246 0.0003 (1/2905) 0 * Os_TE_385262 Os_TE_385262 Chr4 23442414 23442415 + STOWAWAY51_OS 246 0.0003 (1/2907) 0 * Os_TE_385263 Os_TE_385242 Chr4 23438808 23438809 + RETRO2A_LTR 12895 0.0327 (97/2965) 0 * * Os_TE_385218 Chr4 23430548 23430549 + SZ-55_LTR 10318 0.0003 (1/2937) 0 * Os_TE_385217 Os_TE_385217 Chr4 23430544 23430543 - SZ-55_LTR 10318 0.0003 (1/2935) 0 * Os_TE_385218 Os_TE_385213 Chr4 23427656 23427657 + RETROSAT4_LTR 13504 0.0327 (97/2969) 0 * Os_TE_385212 Os_TE_385212 Chr4 23427652 23427651 - SZ-35LTR 3853 0.0399 (119/2984) 0 * Os_TE_385213 Os_TE_385203 Chr4 23425533 23425532 + ORSgTEMT01601934 207 0.0503 (116/2308) 0 * * Os_TE_385195 Chr4 23422617 23422618 + COPI2_LTR 4733 0.2165 (649/2997) 0 * Os_TE_385194 Os_TE_385194 Chr4 23422613 23422612 - COPI2_LTR 4733 0.2182 (654/2997) 0 * Os_TE_385195 Os_TE_385185 Chr4 23418529 23418530 + SZ-48LTR 3632 0.0468 (140/2992) 0 * * Os_TE_385175 Chr4 23413264 23413265 + MPING 430 0.0003 (1/2993) 0 * Os_TE_385174 Os_TE_385174 Chr4 23413262 23413261 - MPING 430 0.0003 (1/2991) 0 * Os_TE_385175 Os_TE_385163 Chr4 23410842 23410843 - TYPEU 362 0.0014 (4/2936) 0 * * Os_TE_385155 Chr4 23410433 23410432 - DNAUN1_OS 408 0.0085 (25/2958) 0 * * Os_TE_385153 Chr4 23409660 23409659 - SZ-22_LTR 4403 0.0037 (11/2962) 0 * * Os_TE_385151 Chr4 23408683 23408682 + STOWAWAY51_OS 246 0.0023 (7/2986) 0 * Os_TE_385150 Os_TE_385150 Chr4 23408677 23408678 + ORSgTEMT01601591 242 0.0023 (7/2986) 0 * Os_TE_385151 Os_TE_385117 Chr4 23395891 23395892 - RIREX_LTR 8828 0.0004 (1/2543) 0 * * Os_TE_385108 Chr4 23394913 23394912 + RETROSAT4_LTR 13504 0.2490 (705/2831) 0 * * Os_TE_385091 Chr4 23390917 23390918 + RETRO2A_LTR 12895 0.0004 (1/2799) 0 * Os_TE_385090 Os_TE_385090 Chr4 23390913 23390912 - RETRO2A_LTR 12895 0.0003 (1/2990) 0 * Os_TE_385091 Os_TE_385086 Chr4 23388479 23388480 + RIREX_LTR 8828 0.0004 (1/2832) 0 * Os_TE_385085 Os_TE_385085 Chr4 23388475 23388474 - RIREX_LTR 8828 0.0004 (1/2839) 0 * Os_TE_385086 Os_TE_385063 Chr4 23385080 23385079 + STOWAWAY51_OS 246 0.0003 (1/2896) 0 * Os_TE_385062 Os_TE_385062 Chr4 23385074 23385075 - STOWAWAY51_OS 246 0.0003 (1/2888) 0 * Os_TE_385063 Os_TE_385055 Chr4 23380594 23380593 - COPIA2-LTR_OS 6433 0.0013 (4/2987) 0 * * Os_TE_385048 Chr4 23379890 23379891 + MPING 430 0.0007 (2/2992) 0 * Os_TE_385047 Os_TE_385047 Chr4 23379888 23379887 - MPING 430 0.0007 (2/2993) 0 * Os_TE_385048 Os_TE_385046 Chr4 23379644 23379643 + TELIA 141 0.0003 (1/2955) 0 * * Os_TE_384970 Chr4 23338606 23338607 + OLO24 345 0.0141 (42/2980) 0 * Os_TE_384969 Os_TE_384969 Chr4 23338604 23338603 - OLO24 345 0.0137 (41/2989) 0 * Os_TE_384970 Os_TE_384964 Chr4 23336948 23336949 + MPING 430 0.0003 (1/2944) 0 * Os_TE_384963 Os_TE_384963 Chr4 23336946 23336945 - MPING 430 0.0003 (1/2943) 0 * Os_TE_384964 Os_TE_384952 Chr4 23328009 23328010 + ORSgTETNOOT01834 251 0.0386 (113/2926) 0 * Os_TE_384951 Os_TE_384951 Chr4 23328007 23328006 + ORSgTETNOOT01834 251 0.0391 (115/2938) 0 * Os_TE_384952 Os_TE_384933 Chr4 23314097 23314096 + ORSiTERTOOT00085 785 0.0003 (1/2923) 0 * * Os_TE_384923 Chr4 23311805 23311804 - SZ-40LTR 2465 0.0011 (3/2678) 0 * * Os_TE_384918 Chr4 23306452 23306453 + COPI2_LTR 4733 0.0299 (89/2981) 0 * Os_TE_384917 Os_TE_384917 Chr4 23306448 23306447 - COPI2_LTR 4733 0.0305 (91/2979) 0 * Os_TE_384918 Os_TE_384915 Chr4 23305568 23305569 - COPI2_LTR 4733 0.0010 (3/2981) 0 * Os_TE_384914 Os_TE_384914 Chr4 23305564 23305563 + COPI2_LTR 4733 0.0010 (3/2981) 0 * Os_TE_384915 Os_TE_384905 Chr4 23300501 23300502 - TYPEM 227 0.0003 (1/2976) 0 * Os_TE_384904 Os_TE_384904 Chr4 23300500 23300499 - ORSgTEMT02400179 221 0.0003 (1/2973) 0 * Os_TE_384905 Os_TE_384898 Chr4 23297140 23297139 - MERMITEA 1710 0.0003 (1/2940) 0 * * Os_TE_384897 Chr4 23297094 23297095 - MPING 430 0.0003 (1/2947) 0 * Os_TE_384896 Os_TE_384896 Chr4 23297092 23297091 + MPING 430 0.0003 (1/2956) 0 * Os_TE_384897 Os_TE_384893 Chr4 23292178 23292179 - ORSiTERTOOT00074 4935 0.0003 (1/2983) 0 * Os_TE_384892 Os_TE_384892 Chr4 23292174 23292173 + ORSiTERTOOT00074 4935 0.0003 (1/2987) 0 * Os_TE_384893 Os_TE_384866 Chr4 23280736 23284426 + RETROSAT4_LTR 13504 0.8919 (2492/2794) 1 Solo_LTR * Os_TE_384864 Chr4 23280473 23280472 + RETROSAT4_LTR 13504 0.1036 (305/2945) 0 * * Os_TE_384829 Chr4 23268999 23269000 - AMYLTP 383 0.0021 (6/2902) 0 * Os_TE_384828 Os_TE_384828 Chr4 23268991 23268990 + AMYLTP 383 0.0021 (6/2897) 0 * Os_TE_384829 Os_TE_384790 Chr4 23248773 23248774 - DNAUN1_OS 408 0.0029 (1/343) -1 * * Os_TE_384772 Chr4 23242509 23242508 - ORSgTEMT02400179 221 0.0003 (1/2992) 0 * Os_TE_384771 Os_TE_384771 Chr4 23242506 23242507 + ORSgTEMT02400034 225 0.0003 (1/2995) 0 * Os_TE_384772 Os_TE_384757 Chr4 23237273 23237272 + MPING 430 0.0003 (1/2981) 0 * * Os_TE_384722 Chr4 23220082 23220083 - COPIA2-LTR_OS 6433 0.0020 (6/2993) 0 * Os_TE_384721 Os_TE_384721 Chr4 23220078 23220077 + COPIA2-LTR_OS 6433 0.0020 (6/2987) 0 * Os_TE_384722 Os_TE_384670 Chr4 23198861 23198860 + OLO24 345 0.0003 (1/2989) 0 * * Os_TE_384668 Chr4 23198657 23198658 + ORSgTETNOOT01834 251 0.1581 (472/2985) 0 * * Os_TE_384663 Chr4 23198230 23198231 - HARB-1_OS 5166 0.0003 (1/2968) 0 * Os_TE_384662 Os_TE_384662 Chr4 23198228 23198227 + HARB-1_OS 5166 0.0003 (1/2980) 0 * Os_TE_384663 Os_TE_384621 Chr4 23190891 23190892 - STOWAWAY51_OS 246 0.0003 (1/2963) 0 * * Os_TE_384612 Chr4 23183287 23183288 - RETRO1_LTR 8314 0.0041 (12/2952) 0 * Os_TE_384611 Os_TE_384611 Chr4 23183283 23183282 + RETRO2A_LTR 12895 0.0041 (12/2949) 0 * Os_TE_384612 Os_TE_384610 Chr4 23182936 23182937 + TWIF 586 0.0003 (1/2994) 0 * Os_TE_384609 Os_TE_384609 Chr4 23182929 23182928 - ORSiTETNOOT00134 607 0.0003 (1/2993) 0 * Os_TE_384610 Os_TE_384603 Chr4 23179675 23179674 + ORSgTEMT01601445 230 0.0004 (1/2829) 0 * * Os_TE_384602 Chr4 23179647 23179648 + RETRO2_LTR 12874 0.0003 (1/2899) 0 * * Os_TE_384598 Chr4 23178497 23178498 - ORSgTEMT02400179 221 0.0003 (1/2962) 0 * Os_TE_384597 Os_TE_384597 Chr4 23178496 23178495 - TYPEM 227 0.0003 (1/2964) 0 * Os_TE_384598 Os_TE_384572 Chr4 23167373 23167374 + SZ-48LTR 3632 0.0257 (76/2952) 0 * Os_TE_384571 Os_TE_384571 Chr4 23167369 23167368 - SZ-35LTR 3853 0.0257 (76/2959) 0 * Os_TE_384572 Os_TE_384560 Chr4 23165054 23165055 - ORSgTEMT00600304 361 0.0003 (1/2997) 0 * Os_TE_384559 Os_TE_384559 Chr4 23165051 23165050 - CASTAWAY 364 0.0006 (1/1800) 0 * Os_TE_384560 Os_TE_384558 Chr4 23164971 23164970 + ORSgTEMT00500095 150 0.4290 (1285/2995) 0 * * Os_TE_384526 Chr4 23153601 23153602 + OSTE33 1012 0.3101 (907/2925) 0 * Os_TE_384525 Os_TE_384525 Chr4 23153592 23153591 + OSTE33 1012 0.3341 (999/2990) 0 * Os_TE_384526 Os_TE_384473 Chr4 23124871 23124872 - TNR2A 152 0.0024 (7/2955) 0 * Os_TE_384472 Os_TE_384472 Chr4 23124855 23124854 - TNR2A 152 0.0026 (7/2724) 0 * Os_TE_384473 Os_TE_384469 Chr4 23124530 23124531 - INDITTO 263 0.0915 (274/2996) 0 * Os_TE_384468 Os_TE_384468 Chr4 23124528 23124527 + ORSgTETNOOT02316 263 0.0918 (275/2996) 0 * Os_TE_384469 Os_TE_384462 Chr4 23112961 23112962 + RETRO2_LTR 12874 0.0003 (1/2998) 0 * Os_TE_384461 Os_TE_384461 Chr4 23112957 23112956 - RETRO2_LTR 12874 0.0003 (1/2999) 0 * Os_TE_384462 Os_TE_384451 Chr4 23107883 23107884 - COPIA2-LTR_OS 6433 0.0027 (8/2995) 0 * Os_TE_384450 Os_TE_384450 Chr4 23107879 23107878 + COPIA2-LTR_OS 6433 0.0027 (8/2998) 0 * Os_TE_384451 Os_TE_384441 Chr4 23102716 23102717 - RIRE5-LTR_OS 6427 0.0030 (9/2993) 0 * Os_TE_384440 Os_TE_384440 Chr4 23102709 23102708 + RIRE5-LTR_OS 6427 0.0030 (9/2993) 0 * Os_TE_384441 Os_TE_384436 Chr4 23100383 23100384 + RIREX_LTR 8828 0.0143 (43/2997) 0 * Os_TE_384435 Os_TE_384435 Chr4 23100379 23100378 - RIREX_LTR 8828 0.0147 (44/2997) 0 * Os_TE_384436 Os_TE_384422 Chr4 23093978 23093977 + ORSgTETNOOT00908 242 0.0003 (1/2984) 0 * * Os_TE_384421 Chr4 23092371 23086426 - MuDR3_OS 8604 0.8912 (2606/2924) 1 Intact Os_TE_384416 Os_TE_384416 Chr4 23086426 23092368 - MuDR3_OS 8604 0.8874 (2530/2851) 1 Intact Os_TE_384421 Os_TE_384414 Chr4 23085600 23085601 - TEMPINDAS 4259 0.0003 (1/2965) 0 * * Os_TE_384393 Chr4 23076532 23076533 - RETROSAT5_LTR 13878 0.0021 (6/2904) 0 * Os_TE_384392 Os_TE_384392 Chr4 23076528 23076527 + SZ-67LTR 1540 0.0021 (6/2882) 0 * Os_TE_384393 Os_TE_384367 Chr4 23059971 23059970 + COPI2_LTR 4733 0.0007 (2/2999) 0 * * Os_TE_384327 Chr4 23044895 23044896 - TEMPINDAS 4259 0.0747 (219/2930) 0 * * Os_TE_384304 Chr4 23037604 23037603 + ORSgTEMT00901798 232 0.0021 (6/2894) 0 * * Os_TE_384301 Chr4 23037202 23037203 + SC-6_LTR 6317 0.0003 (1/2892) 0 * * Os_TE_384270 Chr4 23022219 23022220 + COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_384269 Os_TE_384269 Chr4 23022215 23022214 - COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_384270 Os_TE_384268 Chr4 23020591 23020592 - ORSgTEMT00600524 364 0.1461 (433/2964) 0 * Os_TE_384267 Os_TE_384267 Chr4 23020589 23020588 + ORSgTEMT00600272 361 0.1411 (418/2963) 0 * Os_TE_384268 Os_TE_384266 Chr4 23020570 23020571 - ORSgTEMT04600010 284 0.0030 (9/2954) 0 * Os_TE_384265 Os_TE_384265 Chr4 23020564 23020563 + ORSgTEMT04600037 279 0.0032 (9/2824) 0 * Os_TE_384266 Os_TE_384227 Chr4 23006038 23006300 - INDITTO 263 0.8303 (2481/2988) 1 Intact * Os_TE_384224 Chr4 23005970 23005971 - ORSgTETN00200001 10994 0.0003 (1/2971) 0 * Os_TE_384223 Os_TE_384223 Chr4 23005968 23005967 + SPMLIKE 10989 0.0003 (1/2984) 0 * Os_TE_384224 Os_TE_384221 Chr4 23004930 23004929 + RETROSAT4_LTR 13504 0.0127 (38/2991) 0 * * Os_TE_384210 Chr4 23002219 23002218 + ORSgTEMT01601122 212 0.1499 (449/2996) 0 * * Os_TE_384206 Chr4 23002107 23002108 + STOWAWAY51_OS 246 0.0017 (5/2995) 0 * * Os_TE_384199 Chr4 22998966 22998965 - EnSpm-N1_OS 4256 0.0007 (2/2987) 0 * Os_TE_384198 Os_TE_384198 Chr4 22998962 22998963 + EnSpm-N1_OS 4256 0.0007 (2/2991) 0 * Os_TE_384199 Os_TE_384195 Chr4 22995568 22995569 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * * Os_TE_384191 Chr4 22993938 22993939 - MPING 430 0.0010 (3/2992) 0 * Os_TE_384190 Os_TE_384190 Chr4 22993936 22993935 + MPING 430 0.0010 (3/2993) 0 * Os_TE_384191 Os_TE_384159 Chr4 22974990 22974989 + INDITTO 263 0.0003 (1/2980) 0 * * Os_TE_384142 Chr4 22969753 22969754 - ORSiTERT00100062 5674 0.0003 (1/2996) 0 * Os_TE_384141 Os_TE_384141 Chr4 22969749 22969748 + OSTONOR1_LTR 6440 0.0003 (1/2997) 0 * Os_TE_384142 Os_TE_384130 Chr4 22963049 22963050 + MERMITEA 1710 0.0073 (22/2995) 0 * Os_TE_384129 Os_TE_384129 Chr4 22963044 22963043 - MERMITED 1572 0.0070 (21/2993) 0 * Os_TE_384130 Os_TE_384125 Chr4 22961791 22961792 - STOWAWAY51_OS 246 0.0003 (1/2984) 0 * * Os_TE_384110 Chr4 22955437 22955438 - OSTE33 1012 0.0852 (253/2971) 0 * * Os_TE_384078 Chr4 22928066 22928067 - RIREX_LTR 8828 0.0103 (30/2904) 0 * Os_TE_384077 Os_TE_384077 Chr4 22928062 22928061 + RIREX_LTR 8828 0.0098 (29/2955) 0 * Os_TE_384078 Os_TE_384069 Chr4 22924268 22924269 - COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_384068 Os_TE_384068 Chr4 22924264 22924263 + COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_384069 Os_TE_384067 Chr4 22924061 22924062 + MPING 430 0.0003 (1/2989) 0 * Os_TE_384066 Os_TE_384066 Chr4 22924059 22924058 - MPING 430 0.0003 (1/2992) 0 * Os_TE_384067 Os_TE_384065 Chr4 22922953 22922954 + TYPEU4 402 0.0030 (9/2993) 0 * Os_TE_384064 Os_TE_384064 Chr4 22922945 22922944 - TYPEU1 380 0.0030 (9/2993) 0 * Os_TE_384065 Os_TE_384012 Chr4 22886538 22886537 - SZ-40LTR 2465 0.0003 (1/2997) 0 * Os_TE_384011 Os_TE_384011 Chr4 22886535 22886536 + GYPSY-A_LTR 8951 0.0003 (1/2997) 0 * Os_TE_384012 Os_TE_384007 Chr4 22885339 22885340 - OSTONOR1_LTR 6440 0.0003 (1/2991) 0 * Os_TE_384006 Os_TE_384006 Chr4 22885335 22885334 + OSTONOR1_LTR 6440 0.0003 (1/2990) 0 * Os_TE_384007 Os_TE_383984 Chr4 22880285 22880286 + OSTE33 1012 0.2235 (653/2922) 0 * Os_TE_383983 Os_TE_383983 Chr4 22880276 22880275 + OSTE33 1012 0.1723 (477/2768) 0 * Os_TE_383984 Os_TE_383981 Chr4 22879030 22879031 - COPI2_LTR 4733 0.0003 (1/2981) 0 * Os_TE_383980 Os_TE_383980 Chr4 22879026 22879025 + COPI2_LTR 4733 0.0003 (1/2979) 0 * Os_TE_383981 Os_TE_383979 Chr4 22878796 22878505 - ORSgTEMT00101657 321 0.6498 (1935/2978) 1 Intact * Os_TE_383974 Chr4 22877507 22877281 - STOWAWAY24_OS 224 0.6484 (1903/2935) 1 Intact * Os_TE_383963 Chr4 22876705 22877031 - ORSgTEMT00101384 299 0.6494 (1919/2955) 1 Intact * Os_TE_383958 Chr4 22876433 22876580 + ORSgTEMT00500020 148 0.6482 (1927/2973) 1 Intact * Os_TE_383957 Chr4 22876230 22876097 + UNIQUE 158 0.6692 (1934/2890) 1 Intact Os_TE_383956 Os_TE_383956 Chr4 22876092 22876218 - ORSgTEMT00501165 134 0.7151 (1950/2727) 1 Intact Os_TE_383957 Os_TE_383955 Chr4 22876061 22875770 + ORSgTEMT00501204 149 0.6966 (1947/2795) 1 Intact Os_TE_383951 Os_TE_383951 Chr4 22875767 22876061 - ORSgTEMT00501204 149 0.6676 (1952/2924) 1 Intact Os_TE_383955 Os_TE_383945 Chr4 22867527 22867528 - OSTONOR1_LTR 6440 0.0003 (1/2998) 0 * Os_TE_383944 Os_TE_383944 Chr4 22867523 22867522 + OSTONOR1_LTR 6440 0.0003 (1/2998) 0 * Os_TE_383945 Os_TE_383943 Chr4 22866099 22866098 + TREP220 109 0.3409 (992/2910) 0 * Os_TE_383942 Os_TE_383942 Chr4 22866091 22866092 + STOWAWAY47_OS 148 0.3699 (1107/2993) 0 * Os_TE_383943 Os_TE_383933 Chr4 22863058 22863059 - COPI2_LTR 4733 0.0047 (14/2979) 0 * Os_TE_383932 Os_TE_383932 Chr4 22863054 22863053 + COPI2_LTR 4733 0.0044 (13/2982) 0 * Os_TE_383933 Os_TE_383925 Chr4 22860966 22860967 - COPI2_LTR 4733 0.0004 (1/2696) 0 * * Os_TE_383921 Chr4 22858631 22858632 - ORSgTEMT02400179 221 0.0010 (3/2927) 0 * * Os_TE_383904 Chr4 22851742 22851743 - RETRO1_LTR 8314 0.0003 (1/2983) 0 * Os_TE_383903 Os_TE_383903 Chr4 22851738 22851737 + RETRO1_LTR 8314 0.0003 (1/2989) 0 * Os_TE_383904 Os_TE_383897 Chr4 22849905 22849906 + ORSgTEMT01701224 156 0.0020 (6/2933) 0 * * Os_TE_383895 Chr4 22847855 22847856 - TEMPINDAS 4259 0.0754 (219/2906) 0 * * Os_TE_383893 Chr4 22847412 22847413 - ORSgTETNOOT00623 140 0.0023 (7/2985) 0 * * Os_TE_383871 Chr4 22837792 22837793 + COPI1_LTR 4721 0.0023 (7/2996) 0 * Os_TE_383870 Os_TE_383870 Chr4 22837791 22837790 + COPI1_LTR 4721 0.0023 (7/2995) 0 * Os_TE_383871 Os_TE_383865 Chr4 22833732 22833731 - ORSgTEMT00502293 151 0.0017 (5/2995) 0 * * Os_TE_383855 Chr4 22830913 22830914 - ORSgTEMT01702216 170 0.0020 (5/2514) 0 * * Os_TE_383854 Chr4 22830902 22830903 + ORSgTEMT00100454 161 0.1805 (541/2997) 0 * * Os_TE_383853 Chr4 22830246 22830247 - INDITTO 263 0.0003 (1/2991) 0 * Os_TE_383852 Os_TE_383852 Chr4 22830244 22830243 + INDITTO 263 0.0003 (1/2971) 0 * Os_TE_383853 Os_TE_383835 Chr4 22825001 22825000 + STOWAWAY44_OS 240 0.0016 (4/2495) 0 * Os_TE_383834 Os_TE_383834 Chr4 22824998 22824999 - STOWAWAY44_OS 240 0.0004 (1/2613) 0 * Os_TE_383835 Os_TE_383823 Chr4 22820925 22818770 - RPO_OS 1983 0.6771 (2013/2973) 1 Intact Os_TE_383821 Os_TE_383821 Chr4 22818770 22820925 + RPO_OS 1983 0.6701 (1966/2934) 1 Intact Os_TE_383823 Os_TE_383819 Chr4 22818283 22818135 - UNIQUE 158 0.8882 (2654/2988) 1 Intact Os_TE_383816 Os_TE_383816 Chr4 22818132 22818274 + ORSiTEMT03300001 145 0.8899 (2620/2944) 1 Intact Os_TE_383819 Os_TE_383813 Chr4 22816826 22816825 - TRUNCATOR 2918 0.1660 (493/2969) 0 * Os_TE_383812 Os_TE_383812 Chr4 22816825 22816826 + TRUNCATOR 2918 0.1737 (518/2982) 0 * Os_TE_383813 Os_TE_383811 Chr4 22816625 22816626 + RETROSAT2LTRA 3112 0.1029 (306/2974) 0 * Os_TE_383810 Os_TE_383810 Chr4 22816621 22816620 - RETROSAT3_LTR 11537 0.1072 (320/2985) 0 * Os_TE_383811 Os_TE_383806 Chr4 22815009 22814185 + OSTE21 1271 0.8879 (2653/2988) 1 Intact * Os_TE_383797 Chr4 22803942 22803943 - F569 228 0.0003 (1/2996) 0 * Os_TE_383796 Os_TE_383796 Chr4 22803940 22803939 + F569 228 0.0003 (1/2997) 0 * Os_TE_383797 Os_TE_383787 Chr4 22802116 22802117 + RIREX_LTR 8828 0.0344 (103/2995) 0 * Os_TE_383786 Os_TE_383786 Chr4 22802112 22802111 - RIREX_LTR 8828 0.0351 (105/2993) 0 * Os_TE_383787 Os_TE_383777 Chr4 22793944 22793943 - ORSgTEMT00700002 381 0.0024 (7/2958) 0 * * Os_TE_383758 Chr4 22781618 22781619 - ORSgTERT00100663 207 0.0012 (1/803) -1 * * Os_TE_383741 Chr4 22776364 22776363 + ORSgTETNOOT01313 249 0.0004 (1/2356) 0 * * Os_TE_383530 Chr4 22651811 22651812 - SZ-40LTR 2465 0.0060 (18/2994) 0 * * Os_TE_383511 Chr4 22644390 22644391 - ORSiTERT00100062 5674 0.5696 (1658/2911) 0 * Os_TE_383510 Os_TE_383510 Chr4 22644386 22644385 + OSTONOR1_LTR 6440 0.5834 (1720/2948) 0 * Os_TE_383511 Os_TE_383507 Chr4 22640953 22640954 - HARB-1_OS 5166 0.0007 (2/2992) 0 * Os_TE_383506 Os_TE_383506 Chr4 22640951 22640950 + HARB-1_OS 5166 0.0007 (2/2995) 0 * Os_TE_383507 Os_TE_383505 Chr4 22640416 22640417 - RETROSAT5_LTR 13878 0.0003 (1/2996) 0 * Os_TE_383504 Os_TE_383504 Chr4 22640412 22640411 + SZ-67LTR 1540 0.0003 (1/2996) 0 * Os_TE_383505 Os_TE_383497 Chr4 22636896 22636895 + ORSgTEMT01601591 242 0.0020 (6/2961) 0 * Os_TE_383496 Os_TE_383496 Chr4 22636890 22636891 + STOWAWAY51_OS 246 0.0027 (8/2965) 0 * Os_TE_383497 Os_TE_383494 Chr4 22636648 22636649 + JOUZHENA 607 0.0024 (7/2960) 0 * Os_TE_383493 Os_TE_383493 Chr4 22636641 22636640 - JOUZHENA 607 0.0014 (4/2954) 0 * Os_TE_383494 Os_TE_383483 Chr4 22635379 22635380 - COPIA2-LTR_OS 6433 0.0230 (66/2866) 0 * Os_TE_383482 Os_TE_383482 Chr4 22635375 22635374 + COPIA2-LTR_OS 6433 0.0222 (63/2838) 0 * Os_TE_383483 Os_TE_383481 Chr4 22634913 22634914 + COPI2_LTR 4733 0.0004 (1/2810) 0 * * Os_TE_383476 Chr4 22633888 22633889 + SEVERIN-2 1952 0.0003 (1/2939) 0 * * Os_TE_383475 Chr4 22633455 22633456 - ORSgTEMT05100007 257 0.0003 (1/2988) 0 * * Os_TE_383469 Chr4 22626959 22626960 + OSTE33 1012 0.0007 (2/2992) 0 * Os_TE_383468 Os_TE_383468 Chr4 22626950 22626949 + OSTE33 1012 0.0007 (2/2992) 0 * Os_TE_383469 Os_TE_383463 Chr4 22625955 22625954 + RPO_OS 1983 0.0816 (240/2941) 0 * Os_TE_383462 Os_TE_383462 Chr4 22625953 22625954 - RPO_OS 1983 0.0797 (235/2950) 0 * Os_TE_383463 Os_TE_383442 Chr4 22615626 22615627 + COPIA2-LTR_OS 6433 0.0003 (1/2955) 0 * Os_TE_383441 Os_TE_383441 Chr4 22615622 22615621 - COPIA2-LTR_OS 6433 0.0003 (1/2957) 0 * Os_TE_383442 Os_TE_383437 Chr4 22613092 22613093 - ORSgTEMT00501255 146 0.2451 (732/2987) 0 * * Os_TE_383436 Chr4 22611242 22611243 + MPING 430 0.0003 (1/2994) 0 * Os_TE_383435 Os_TE_383435 Chr4 22611240 22611239 - MPING 430 0.0003 (1/2995) 0 * Os_TE_383436 Os_TE_383434 Chr4 22609857 22609858 - RIRE2_LTR 11306 0.0838 (250/2983) 0 * Os_TE_383433 Os_TE_383433 Chr4 22609853 22609852 - ORSgTERT00201216 11284 0.0863 (258/2988) 0 * Os_TE_383434 Os_TE_383401 Chr4 22591624 22591623 - ORSgTEMT01702029 126 0.0064 (19/2976) 0 * * Os_TE_383389 Chr4 22582713 22582568 - TNR2A 152 0.1064 (317/2980) 1 Intact Os_TE_383388 Os_TE_383388 Chr4 22582567 22582711 - TNR2A 152 0.1064 (317/2979) 1 Intact Os_TE_383389 Os_TE_383348 Chr4 22573630 22573631 + MPING 430 0.0007 (2/2984) 0 * Os_TE_383347 Os_TE_383347 Chr4 22573628 22573627 - MPING 430 0.0007 (2/2964) 0 * Os_TE_383348 Os_TE_383344 Chr4 22571298 22571059 + ORSgTEMT01400031 216 0.1101 (318/2887) 1 Intact Os_TE_383342 Os_TE_383342 Chr4 22571061 22571296 + STOWAWAY9_OS 235 0.1046 (312/2982) 1 Intact Os_TE_383344 Os_TE_383339 Chr4 22567088 22567089 - AMYLTP 383 0.0007 (2/2975) 0 * Os_TE_383338 Os_TE_383338 Chr4 22567080 22567079 + AMYLTP 383 0.0007 (2/2969) 0 * Os_TE_383339 Os_TE_383288 Chr4 22543935 22543936 + RETRO2A_LTR 12895 0.0386 (54/1398) 0 * Os_TE_383287 Os_TE_383287 Chr4 22543931 22543930 - RETRO1_LTR 8314 0.0380 (53/1395) 0 * Os_TE_383288 Os_TE_383284 Chr4 22543168 22543167 - INDITTO 263 0.0017 (2/1150) 0 * * Os_TE_383271 Chr4 22541593 22541592 - OLO24 345 0.0003 (1/2974) 0 * * Os_TE_383230 Chr4 22515670 22515669 + ORSgTETNOOT00908 242 0.0904 (269/2975) 0 * * Os_TE_383228 Chr4 22515544 22515543 - AMYLTP 383 0.0004 (1/2683) 0 * * Os_TE_383178 Chr4 22485535 22485536 + COPI2_LTR 4733 0.0007 (2/2973) 0 * Os_TE_383177 Os_TE_383177 Chr4 22485531 22485530 - COPI2_LTR 4733 0.0007 (2/2973) 0 * Os_TE_383178 Os_TE_383167 Chr4 22481490 22481491 + MDR2 6967 0.0003 (1/2988) 0 * Os_TE_383166 Os_TE_383166 Chr4 22481482 22481481 + MDR2 6967 0.0003 (1/2989) 0 * Os_TE_383167 Os_TE_383151 Chr4 22474478 22474477 - SC-8_LTR 4951 0.2082 (624/2997) 0 * * Os_TE_383150 Chr4 22474473 22474474 + ORSiTERTOOT00381 4988 0.2067 (619/2995) 0 * Os_TE_383149 Os_TE_383149 Chr4 22474469 22474468 - SC-8_LTR 4951 0.2066 (619/2996) 0 * Os_TE_383150 Os_TE_383140 Chr4 22471066 22471067 + OSTE33 1012 0.0387 (116/2997) 0 * Os_TE_383139 Os_TE_383139 Chr4 22471057 22471056 + OSTE33 1012 0.0368 (110/2993) 0 * Os_TE_383140 Os_TE_383135 Chr4 22470216 22470217 - RIRE2_LTR 11306 0.0007 (2/2996) 0 * Os_TE_383134 Os_TE_383134 Chr4 22470212 22470211 - ORSgTERT00201216 11284 0.0007 (2/2995) 0 * Os_TE_383135 Os_TE_383109 Chr4 22456664 22457005 + ORSgTEMT00600502 360 0.4858 (1451/2987) 1 Intact * Os_TE_383107 Chr4 22455767 22455768 + COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_383106 Os_TE_383106 Chr4 22455763 22455762 - COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_383107 Os_TE_383103 Chr4 22454689 22454329 + ORSgTEMT00600272 361 0.6798 (1996/2936) 1 Intact Os_TE_383102 Os_TE_383102 Chr4 22454326 22454689 - ORSgTEMT00600524 364 0.6706 (1954/2914) 1 Intact Os_TE_383103 Os_TE_383097 Chr4 22453406 22453194 + ORSgTEMT00900562 216 0.1449 (430/2968) 1 Intact * Os_TE_383088 Chr4 22450930 22450931 + ORSgTEMT06100023 259 0.0004 (1/2619) 0 * * Os_TE_383078 Chr4 22449211 22449210 - STOWAWAY51_OS 246 0.0017 (5/2995) 0 * Os_TE_383077 Os_TE_383077 Chr4 22449205 22449206 + STOWAWAY51_OS 246 0.0017 (5/2999) 0 * Os_TE_383078 Os_TE_383072 Chr4 22446049 22446050 - SC-3_LTR 5748 0.0003 (1/2992) 0 * Os_TE_383071 Os_TE_383071 Chr4 22446045 22446044 + ORSiTERTOOT00296 5553 0.0003 (1/2991) 0 * Os_TE_383072 Os_TE_383070 Chr4 22442019 22442020 + AMYLTP 383 0.0057 (17/2990) 0 * Os_TE_383069 Os_TE_383069 Chr4 22442011 22442010 - AMYLTP 383 0.0050 (15/2991) 0 * Os_TE_383070 Os_TE_383068 Chr4 22441631 22441632 - INDITTO 263 0.0047 (14/2987) 0 * Os_TE_383067 Os_TE_383067 Chr4 22441629 22441628 - ORSgTETNOOT02417 265 0.0047 (14/2996) 0 * Os_TE_383068 Os_TE_383066 Chr4 22441510 22441509 - ORSgTETNOOT02565 240 0.0053 (16/2993) 0 * * Os_TE_383054 Chr4 22438071 22438072 + RIRE5-LTR_OS 6427 0.0003 (1/2991) 0 * Os_TE_383053 Os_TE_383053 Chr4 22438064 22438063 - RIRE5-LTR_OS 6427 0.0007 (2/2990) 0 * Os_TE_383054 Os_TE_383049 Chr4 22432814 22432815 + KRISPIE 956 0.0007 (2/2988) 0 * Os_TE_383048 Os_TE_383048 Chr4 22432809 22432808 - ORSiTEMT01300001 950 0.0007 (2/2986) 0 * Os_TE_383049 Os_TE_383044 Chr4 22431500 22431501 - MPING 430 0.0007 (2/2997) 0 * Os_TE_383043 Os_TE_383043 Chr4 22431498 22431497 + MPING 430 0.0007 (2/2997) 0 * Os_TE_383044 Os_TE_383023 Chr4 22423593 22423594 - MuDR4_OS 7610 0.0050 (15/2992) 0 * Os_TE_383022 Os_TE_383022 Chr4 22423585 22423584 - MuDR4_OS 7610 0.0047 (14/2990) 0 * Os_TE_383023 Os_TE_383021 Chr4 22423553 22423554 + NDNA1TNA_OS 334 0.0003 (1/2974) 0 * * Os_TE_383019 Chr4 22423529 22423530 - COPIA2-LTR_OS 6433 0.0214 (64/2987) 0 * Os_TE_383018 Os_TE_383018 Chr4 22423525 22423524 + COPIA2-LTR_OS 6433 0.0198 (59/2981) 0 * Os_TE_383019 Os_TE_382996 Chr4 22414260 22414261 - MPING 430 0.0003 (1/2986) 0 * * Os_TE_382994 Chr4 22413385 22413384 + STOWAWAY51_OS 246 0.0003 (1/2998) 0 * Os_TE_382993 Os_TE_382993 Chr4 22413379 22413380 + ORSgTEMT01601591 242 0.0003 (1/2997) 0 * Os_TE_382994 Os_TE_382983 Chr4 22410274 22410039 - ORSgTETNOOT02565 240 0.8485 (2420/2852) 1 Intact * Os_TE_382966 Chr4 22406631 22406630 - STOWAWAY51_OS 246 0.0003 (1/2985) 0 * * Os_TE_382950 Chr4 22401099 22401100 - ORSiTERTOOT00116 720 0.0017 (5/2985) 0 * * Os_TE_382942 Chr4 22394182 22394183 + TELIA 141 0.0007 (2/2705) -1 * Os_TE_382941 Os_TE_382941 Chr4 22394174 22394173 + TELIA 141 0.0015 (4/2695) -1 * Os_TE_382942 Os_TE_382932 Chr4 22384747 22384748 + ORSgTETNOOT01686 252 0.0003 (1/2897) 0 * Os_TE_382931 Os_TE_382931 Chr4 22384743 22384742 + ORSgTETNOOT01834 251 0.0003 (1/2881) 0 * Os_TE_382932 Os_TE_382905 Chr4 22368888 22368889 + SZ-62LTR 3649 0.0492 (147/2986) 0 * Os_TE_382904 Os_TE_382904 Chr4 22368884 22368883 - SZ-62LTR 3649 0.0522 (156/2991) 0 * Os_TE_382905 Os_TE_382895 Chr4 22362075 22362076 + TWIF 586 0.0127 (38/2991) 0 * * Os_TE_382888 Chr4 22360724 22360725 - MPING 430 0.0027 (8/2915) 0 * Os_TE_382887 Os_TE_382887 Chr4 22360722 22360721 + MPING 430 0.0031 (9/2934) 0 * Os_TE_382888 Os_TE_382875 Chr4 22347038 22347037 - NDNA1TNA_OS 334 0.0007 (2/2989) 0 * * Os_TE_382858 Chr4 22337982 22337983 - SC-3_LTR 5748 0.0003 (1/2997) 0 * Os_TE_382857 Os_TE_382857 Chr4 22337978 22337977 + ORSiTERTOOT00296 5553 0.0003 (1/2997) 0 * Os_TE_382858 Os_TE_382848 Chr4 22335513 22335512 - SC-4_LTR 5218 0.0003 (1/2995) 0 * * Os_TE_382840 Chr4 22331649 22331650 + ORSiTERTOOT00367 5639 0.0030 (9/2982) 0 * Os_TE_382839 Os_TE_382839 Chr4 22331645 22331644 - ORSiTERTOOT00367 5639 0.0030 (9/2980) 0 * Os_TE_382840 Os_TE_382833 Chr4 22326129 22326130 + SZ-40LTR 2465 0.0010 (3/2950) 0 * * Os_TE_382801 Chr4 22313000 22313001 + COPIA2-LTR_OS 6433 0.0020 (6/2985) 0 * * Os_TE_382783 Chr4 22309447 22309446 + HELITRON7_OS 10153 0.0077 (22/2849) 0 * Os_TE_382782 Os_TE_382782 Chr4 22309443 22309444 - HELITRON7_OS 10153 0.0073 (21/2872) 0 * Os_TE_382783 Os_TE_382771 Chr4 22301791 22301790 - ORSiTETNOOT00107 906 0.0560 (163/2911) 0 * * Os_TE_382756 Chr4 22296714 22296713 + TRUNCATOR 2918 0.0051 (15/2919) 0 * * Os_TE_382743 Chr4 22294694 22294695 + COPIA2-LTR_OS 6433 0.0004 (1/2857) 0 * Os_TE_382742 Os_TE_382742 Chr4 22294690 22294689 - COPIA2-LTR_OS 6433 0.0003 (1/2860) 0 * Os_TE_382743 Os_TE_382735 Chr4 22292860 22292861 + INDITTO 263 0.0004 (1/2744) 0 * Os_TE_382734 Os_TE_382734 Chr4 22292858 22292857 - INDITTO 263 0.0004 (1/2777) 0 * Os_TE_382735 Os_TE_382733 Chr4 22292723 22292724 + HARB-1_OS 5166 0.0028 (8/2866) 0 * Os_TE_382732 Os_TE_382732 Chr4 22292721 22292720 - HARB-1_OS 5166 0.0031 (9/2872) 0 * Os_TE_382733 Os_TE_382731 Chr4 22292555 22292556 + COPIA2-LTR_OS 6433 0.0003 (1/2938) 0 * Os_TE_382730 Os_TE_382730 Chr4 22292551 22292550 - COPIA2-LTR_OS 6433 0.0003 (1/2919) 0 * Os_TE_382731 Os_TE_382703 Chr4 22289184 22289183 + RIREX_LTR 8828 0.0003 (1/2971) 0 * * Os_TE_382702 Chr4 22289104 22287734 + CACTA-B 1103 0.8063 (2343/2906) 1 Intact Os_TE_382701 Os_TE_382701 Chr4 22287731 22289101 + ORSgTETN00200005 1121 0.8020 (2313/2884) 1 Intact Os_TE_382702 Os_TE_382683 Chr4 22284600 22284601 + ORSgTERTOOT00009 12852 0.0050 (15/2994) 0 * Os_TE_382682 Os_TE_382682 Chr4 22284596 22284595 - RETRO2_LTR 12874 0.0043 (13/2997) 0 * Os_TE_382683 Os_TE_382681 Chr4 22284251 22284252 + RETRO2A_LTR 12895 0.0013 (4/2995) 0 * Os_TE_382680 Os_TE_382680 Chr4 22284247 22284246 - RETRO1_LTR 8314 0.0013 (4/2993) 0 * Os_TE_382681 Os_TE_382679 Chr4 22284245 22284246 - SZ-35LTR 3853 0.0043 (13/2993) 0 * Os_TE_382678 Os_TE_382678 Chr4 22284241 22284240 + RETROSAT4_LTR 13504 0.0047 (14/2991) 0 * Os_TE_382679 Os_TE_382652 Chr4 22281298 22281299 + RETRO2A_LTR 12895 0.0013 (4/2988) 0 * Os_TE_382651 Os_TE_382651 Chr4 22281294 22281293 - RETRO1_LTR 8314 0.0013 (4/2991) 0 * Os_TE_382652 Os_TE_382631 Chr4 22273439 22273440 + CACTA-H 1152 0.0004 (1/2843) 0 * * Os_TE_382624 Chr4 22270480 22270481 + RETRO2_LTR 12874 0.0525 (157/2991) 0 * Os_TE_382623 Os_TE_382623 Chr4 22270476 22270475 - RETRO2_LTR 12874 0.0532 (159/2989) 0 * Os_TE_382624 Os_TE_382621 Chr4 22269793 22269792 + ORSiTERTOOT00296 5553 0.0003 (1/2995) 0 * * Os_TE_382599 Chr4 22257695 22257696 + TNR2A 152 0.0041 (12/2931) 0 * Os_TE_382598 Os_TE_382598 Chr4 22257680 22257679 - TNR2A 152 0.0045 (13/2908) 0 * Os_TE_382599 Os_TE_382594 Chr4 22254895 22253733 + CACTA-B 1103 0.6073 (1811/2982) 1 Intact * Os_TE_382578 Chr4 22250561 22250562 + OSTE33 1012 0.0044 (13/2974) 0 * * Os_TE_382576 Chr4 22250491 22250492 - NDNA1TNA_OS 334 0.0003 (1/2937) 0 * Os_TE_382575 Os_TE_382575 Chr4 22250489 22250488 + NDNA1TNA_OS 334 0.0003 (1/2938) 0 * Os_TE_382576 Os_TE_382535 Chr4 22232487 22232488 - HARB-1_OS 5166 0.0030 (9/2986) 0 * Os_TE_382534 Os_TE_382534 Chr4 22232485 22232484 + HARB-1_OS 5166 0.0027 (8/2984) 0 * Os_TE_382535 Os_TE_382506 Chr4 22221634 22221635 - MuDR4_OS 7610 0.1552 (459/2958) 0 * Os_TE_382505 Os_TE_382505 Chr4 22221628 22221627 - MuDR4_OS 7610 0.1516 (449/2961) 0 * Os_TE_382506 Os_TE_382488 Chr4 22215770 22215032 + JOUZHEN 596 0.6075 (1814/2986) 1 Intact Os_TE_382487 Os_TE_382487 Chr4 22215032 22215770 - JOUZHEN 596 0.6060 (1806/2980) 1 Intact Os_TE_382488 Os_TE_382465 Chr4 22203905 22203906 + MuDR2_OS 6770 0.0003 (1/2993) 0 * Os_TE_382464 Os_TE_382464 Chr4 22203896 22203895 - MuDR2_OS 6770 0.0003 (1/2990) 0 * Os_TE_382465 Os_TE_382458 Chr4 22200750 22200749 - MERMITE18B 1306 0.0020 (6/2992) 0 * * Os_TE_382430 Chr4 22190112 22190113 - HARB-1_OS 5166 0.0007 (2/2998) 0 * Os_TE_382429 Os_TE_382429 Chr4 22190110 22190109 + HARB-1_OS 5166 0.0003 (1/2998) 0 * Os_TE_382430 Os_TE_382428 Chr4 22189877 22189878 + ORSiTERT00200069 6058 0.0003 (1/2987) 0 * * Os_TE_382424 Chr4 22188510 22187460 + RETRO2_LTR 12874 0.5454 (1557/2855) 1 Solo_LTR Os_TE_382423 Os_TE_382423 Chr4 22187460 22188510 - RETRO2_LTR 12874 0.5511 (1597/2898) 1 Solo_LTR Os_TE_382424 Os_TE_382415 Chr4 22181850 22181849 + STOWAWAY51_OS 246 0.0003 (1/2990) 0 * * Os_TE_382410 Chr4 22181178 22181177 - RETROSAT2LTR 12796 0.0007 (1/1456) 0 * * Os_TE_382408 Chr4 22179030 22178637 + ORSgTEMT00300122 416 0.5254 (1572/2992) 1 Intact Os_TE_382407 Os_TE_382407 Chr4 22178631 22179026 + ORSgTEMT00300069 394 0.5238 (1554/2967) 1 Intact Os_TE_382408 Os_TE_382359 Chr4 22163909 22163910 - ORSiTERT00100062 5674 0.0013 (4/2994) 0 * Os_TE_382358 Os_TE_382358 Chr4 22163905 22163904 + OSTONOR1_LTR 6440 0.0013 (4/2997) 0 * Os_TE_382359 Os_TE_382339 Chr4 22160090 22160091 - SZ-22_LTR 4403 0.0003 (1/2962) 0 * Os_TE_382338 Os_TE_382338 Chr4 22160086 22160085 + ORSiTERTOOT00226 792 0.0003 (1/2966) 0 * Os_TE_382339 Os_TE_382336 Chr4 22159927 22159928 - RETRO1_LTR 8314 0.0003 (1/2994) 0 * Os_TE_382335 Os_TE_382335 Chr4 22159923 22159922 + RETRO2A_LTR 12895 0.0003 (1/2995) 0 * Os_TE_382336 Os_TE_382334 Chr4 22159911 22159912 - COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_382333 Os_TE_382333 Chr4 22159907 22159906 + COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_382334 Os_TE_382332 Chr4 22157275 22157274 - ORSgTEMT01601432 239 0.0003 (1/2890) 0 * Os_TE_382331 Os_TE_382331 Chr4 22157272 22157273 + ORSgTEMT01602181 239 0.0003 (1/2920) 0 * Os_TE_382332 Os_TE_382326 Chr4 22156069 22156068 - SEVERIN-2 1952 0.0030 (9/2982) 0 * * Os_TE_382312 Chr4 22146547 22146548 + RETROSAT4_LTR 13504 0.0017 (5/2981) 0 * Os_TE_382311 Os_TE_382311 Chr4 22146543 22146542 - RETROSAT4_LTR 13504 0.0017 (5/2984) 0 * Os_TE_382312 Os_TE_382309 Chr4 22145829 22145830 + CACTA-H 1152 0.0017 (5/2992) 0 * Os_TE_382308 Os_TE_382308 Chr4 22145827 22145826 - CACTA-H 1152 0.0017 (5/2990) 0 * Os_TE_382309 Os_TE_382303 Chr4 22144656 22144657 - AMYLTP 383 0.5504 (1593/2894) 0 * Os_TE_382302 Os_TE_382302 Chr4 22144648 22144647 + AMYLTP 383 0.4722 (1174/2486) 0 * Os_TE_382303 Os_TE_382298 Chr4 22142963 22142962 + SZ-43LTR 4039 0.0048 (5/1042) 0 * * Os_TE_382271 Chr4 22126668 22126669 - SZ-48LTR 3632 0.0003 (1/2976) 0 * Os_TE_382270 Os_TE_382270 Chr4 22126664 22126663 + SZ-48LTR 3632 0.0003 (1/2975) 0 * Os_TE_382271 Os_TE_382265 Chr4 22113231 22113232 + ORSgTETNOOT00032 218 0.0525 (157/2990) 0 * * Os_TE_382264 Chr4 22113140 22113139 + ORSgTEMT01601983 238 0.0003 (1/2994) 0 * Os_TE_382263 Os_TE_382263 Chr4 22113137 22113138 - ORSgTEMT01601432 239 0.0003 (1/2996) 0 * Os_TE_382264 Os_TE_382261 Chr4 22110478 22110479 - ORSiRGRR00000001 280 0.0007 (2/2728) 0 * * Os_TE_382255 Chr4 22098317 22098318 - DITAILA 257 0.0010 (3/2879) 0 * * Os_TE_382230 Chr4 22093445 22093446 - NDNA2TNA_OS 346 0.0037 (11/2995) 0 * * Os_TE_382148 Chr4 22057779 22057780 + MPING 430 0.0005 (1/1903) 0 * Os_TE_382147 Os_TE_382147 Chr4 22057777 22057776 - MPING 430 0.0005 (1/1929) 0 * Os_TE_382148 Os_TE_382146 Chr4 22057325 22057326 - MuDR-5_OS 17471 0.0097 (18/1853) 0 * * Os_TE_382140 Chr4 22055599 22055598 + ORSgTETNOOT02316 263 0.0660 (190/2878) 0 * * Os_TE_382128 Chr4 22045818 22045819 + OSTE33 1012 0.1965 (577/2936) 0 * Os_TE_382127 Os_TE_382127 Chr4 22045809 22045808 + OSTE33 1012 0.2158 (645/2989) 0 * Os_TE_382128 Os_TE_382110 Chr4 22039882 22039881 + ORSgTEMT00901102 213 0.0003 (1/2965) 0 * * Os_TE_382107 Chr4 22039554 22039555 + INDITTO 263 0.0060 (18/2977) 0 * Os_TE_382106 Os_TE_382106 Chr4 22039552 22039551 - INDITTO 263 0.0064 (19/2981) 0 * Os_TE_382107 Os_TE_382104 Chr4 22038364 22038365 + HARB-1_OS 5166 0.0003 (1/2979) 0 * Os_TE_382103 Os_TE_382103 Chr4 22038362 22038361 - HARB-1_OS 5166 0.0003 (1/2980) 0 * Os_TE_382104 Os_TE_382102 Chr4 22038155 22038156 - WUJI 257 0.0010 (3/2991) 0 * * Os_TE_382092 Chr4 22036166 22036167 - INDITTO 263 0.1045 (312/2986) 0 * Os_TE_382091 Os_TE_382091 Chr4 22036164 22036163 + INDITTO 263 0.0990 (293/2960) 0 * Os_TE_382092 Os_TE_382072 Chr4 22033475 22033476 + STOWAWAY45_OS 266 0.0004 (1/2797) 0 * * Os_TE_382071 Chr4 22033359 22033360 - HARB-1_OS 5166 0.0011 (3/2711) 0 * Os_TE_382070 Os_TE_382070 Chr4 22033357 22033356 + HARB-1_OS 5166 0.0012 (3/2427) 0 * Os_TE_382071 Os_TE_382069 Chr4 22033214 22033215 + INDITTO 263 0.2152 (621/2886) 0 * Os_TE_382068 Os_TE_382068 Chr4 22033212 22033211 - INDITTO 263 0.2067 (600/2903) 0 * Os_TE_382069 Os_TE_382026 Chr4 22014061 22014062 - ORSiTETNOOT00134 607 0.0003 (1/2988) 0 * Os_TE_382025 Os_TE_382025 Chr4 22014054 22014053 + TWIF 586 0.0003 (1/2989) 0 * Os_TE_382026 Os_TE_382018 Chr4 22008988 22008989 - SC-3_LTR 5748 0.0003 (1/2995) 0 * Os_TE_382017 Os_TE_382017 Chr4 22008984 22008983 + ORSiTERTOOT00296 5553 0.0003 (1/2997) 0 * Os_TE_382018 Os_TE_381998 Chr4 22000227 22000226 - ORSgTEMT00900498 242 0.0003 (1/2908) 0 * * Os_TE_381982 Chr4 21996008 21996007 + RETRO1_LTR 8314 0.0003 (1/2922) 0 * * Os_TE_381968 Chr4 21987970 21987969 + STOWAWAY51_OS 246 0.0003 (1/2992) 0 * Os_TE_381967 Os_TE_381967 Chr4 21987964 21987965 - STOWAWAY51_OS 246 0.0003 (1/2989) 0 * Os_TE_381968 Os_TE_381966 Chr4 21987870 21987871 - NDNA1TNA_OS 334 0.0003 (1/2993) 0 * Os_TE_381965 Os_TE_381965 Chr4 21987868 21987867 + NDNA1TNA_OS 334 0.0003 (1/2995) 0 * Os_TE_381966 Os_TE_381964 Chr4 21986985 21986986 + COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * Os_TE_381963 Os_TE_381963 Chr4 21986981 21986980 - COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * Os_TE_381964 Os_TE_381923 Chr4 21980201 21980202 - ORSgTEMT00500675 140 0.0010 (3/2956) 0 * * Os_TE_381916 Chr4 21979647 21979646 - QIQI 323 0.0003 (1/2930) 0 * * Os_TE_381899 Chr4 21977921 21977922 + ORSgTEMT00100583 156 0.0003 (1/2942) 0 * * Os_TE_381868 Chr4 21964816 21964815 + STOWAWAY44_OS 240 0.0010 (3/2948) 0 * Os_TE_381867 Os_TE_381867 Chr4 21964813 21964814 - STOWAWAY44_OS 240 0.0007 (2/2943) 0 * Os_TE_381868 Os_TE_381865 Chr4 21963186 21963187 + ORSiTERTOOT00226 792 0.0004 (1/2823) 0 * Os_TE_381864 Os_TE_381864 Chr4 21963182 21963181 - SZ-22_LTR 4403 0.0004 (1/2767) 0 * Os_TE_381865 Os_TE_381863 Chr4 21962952 21962951 + ORSgTEMT01700715 134 0.0015 (3/1968) -1 * * Os_TE_381826 Chr4 21950932 21950931 + BUHUI 375 0.0017 (5/2976) 0 * * Os_TE_381811 Chr4 21945853 21945854 - RETROSAT4_LTR 13504 0.0324 (97/2994) 0 * Os_TE_381810 Os_TE_381810 Chr4 21945849 21945848 + RETROSAT4_LTR 13504 0.0334 (100/2997) 0 * Os_TE_381811 Os_TE_381809 Chr4 21943894 21943895 + COPI2_LTR 4733 0.0003 (1/2980) 0 * Os_TE_381808 Os_TE_381808 Chr4 21943889 21943888 - COPI2_LTR 4733 0.0003 (1/2979) 0 * Os_TE_381809 Os_TE_381798 Chr4 21942344 21942345 + MPING 430 0.0027 (8/2923) 0 * Os_TE_381797 Os_TE_381797 Chr4 21942342 21942341 - MPING 430 0.0027 (8/2915) 0 * Os_TE_381798 Os_TE_381776 Chr4 21932984 21932983 - ORSgTEMT01601432 239 0.0004 (1/2818) 0 * Os_TE_381775 Os_TE_381775 Chr4 21932981 21932982 + ORSgTEMT01601934 207 0.0004 (1/2818) 0 * Os_TE_381776 Os_TE_381773 Chr4 21929612 21929613 - GYPSY-A_LTR 8951 0.0003 (1/2994) 0 * * Os_TE_381747 Chr4 21914847 21927660 + ORSgTERTOOT00009 12852 0.6899 (1967/2851) 1 Intact * Os_TE_381733 Chr4 21911881 21911882 + AMYLTP 383 0.0078 (18/2311) 0 * Os_TE_381732 Os_TE_381732 Chr4 21911873 21911872 - AMYLTP 383 0.0078 (18/2311) 0 * Os_TE_381733 Os_TE_381728 Chr4 21910546 21910547 - CACTA-M 1129 0.2472 (736/2977) 0 * Os_TE_381727 Os_TE_381727 Chr4 21910544 21910543 + CACTA-M 1129 0.1484 (396/2669) 0 * Os_TE_381728 Os_TE_381700 Chr4 21904909 21904910 - ORSiTETNOOT00134 607 0.0003 (1/2906) 0 * Os_TE_381699 Os_TE_381699 Chr4 21904902 21904901 + TWIF 586 0.0003 (1/2916) 0 * Os_TE_381700 Os_TE_381691 Chr4 21901241 21901242 + SC-8_LTR 4951 0.0003 (1/2949) 0 * Os_TE_381690 Os_TE_381690 Chr4 21901237 21901236 - SC-8_LTR 4951 0.0003 (1/2954) 0 * Os_TE_381691 Os_TE_381655 Chr4 21889131 21889132 - ORSgTEMT00600085 364 0.0003 (1/2995) 0 * Os_TE_381654 Os_TE_381654 Chr4 21889129 21889128 + CASTAWAY 364 0.0003 (1/2992) 0 * Os_TE_381655 Os_TE_381651 Chr4 21885600 21885601 - OSTE21 1271 0.1599 (459/2871) 0 * * Os_TE_381640 Chr4 21876890 21876889 + RETRO2A_LTR 12895 0.0129 (38/2944) 0 * * Os_TE_381634 Chr4 21876139 21876140 + STOWAWAY44_OS 240 0.0013 (2/1567) 0 * * Os_TE_381612 Chr4 21867827 21867828 - MDR2 6967 0.0007 (2/2898) 0 * * Os_TE_381608 Chr4 21864677 21864678 + SC-8_LTR 4951 0.0003 (1/2984) 0 * Os_TE_381607 Os_TE_381607 Chr4 21864673 21864672 - SC-8_LTR 4951 0.0003 (1/2986) 0 * Os_TE_381608 Os_TE_381606 Chr4 21863990 21858564 - SC-3_LTR 5748 0.0214 (64/2987) 1 Intact Os_TE_381603 Os_TE_381603 Chr4 21858331 21863990 + ORSiTERTOOT00296 5553 0.0211 (63/2989) 1 Intact Os_TE_381606 Os_TE_381594 Chr4 21853006 21853007 + RETROSAT4_LTR 13504 0.0010 (3/2893) 0 * Os_TE_381593 Os_TE_381593 Chr4 21853002 21853001 - SZ-35LTR 3853 0.0035 (10/2896) 0 * Os_TE_381594 Os_TE_381591 Chr4 21852717 21852718 + GYPSY-A_LTR 8951 0.1340 (393/2932) 0 * Os_TE_381590 Os_TE_381590 Chr4 21852713 21852712 - SZ-40LTR 2465 0.1353 (397/2935) 0 * Os_TE_381591 Os_TE_381570 Chr4 21848868 21848867 + COPIA1-LTR_OS 9292 0.0031 (9/2950) 0 * * Os_TE_381559 Chr4 21841230 21841231 - OSTE24 683 0.0009 (2/2226) 0 * * Os_TE_381558 Chr4 21840953 21840952 + DITAILA 257 0.0033 (10/2987) 0 * Os_TE_381557 Os_TE_381557 Chr4 21840949 21840950 - DITAILA 257 0.0033 (10/2988) 0 * Os_TE_381558 Os_TE_381556 Chr4 21840870 21840869 + OSTE15 1168 0.4691 (1405/2995) 0 * * Os_TE_381544 Chr4 21838402 21838401 - ORSgTEMT01601770 238 0.0023 (7/2981) 0 * Os_TE_381543 Os_TE_381543 Chr4 21838399 21838400 + ORSgTEMT01602188 240 0.0027 (8/2976) 0 * Os_TE_381544 Os_TE_381539 Chr4 21836747 21836748 - OsSN3 183 0.0034 (10/2944) 0 * * Os_TE_381521 Chr4 21835348 21835347 + NDNA1TNA_OS 334 0.0034 (10/2979) 0 * * Os_TE_381510 Chr4 21832368 21832367 + STOWAWAY21_OS 243 0.0003 (1/2995) 0 * * Os_TE_381509 Chr4 21831590 21831591 - CACTA-I 1124 0.0003 (1/2994) 0 * * Os_TE_381508 Chr4 21828496 21828497 + F569 228 0.1315 (392/2982) 0 * * Os_TE_381435 Chr4 21804008 21804009 + ORSiCMCM00100019 2717 0.0004 (1/2743) 0 * Os_TE_381434 Os_TE_381434 Chr4 21804004 21804003 + TRUNCATOR 2918 0.0004 (1/2776) 0 * Os_TE_381435 Os_TE_381421 Chr4 21789834 21789833 + CACTA-H 1152 0.0010 (3/2974) 0 * * Os_TE_381420 Chr4 21789831 21789832 - ORSgTEMT02400179 221 0.0003 (1/2964) 0 * * Os_TE_381404 Chr4 21786318 21786317 - NDNA1TNA_OS 334 0.0004 (1/2503) 0 * * Os_TE_381390 Chr4 21782680 21779292 - TRUNCATOR2_LTR 2904 0.5787 (1720/2972) 1 Intact * Os_TE_381383 Chr4 21778920 21778919 + TRUNCATOR 2918 0.0003 (1/2958) 0 * * Os_TE_381366 Chr4 21772445 21772446 + SZ-62LTR 3649 0.0044 (13/2941) 0 * Os_TE_381365 Os_TE_381365 Chr4 21772441 21772440 - SZ-62LTR 3649 0.0041 (12/2931) 0 * Os_TE_381366 Os_TE_381328 Chr4 21761459 21761460 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_381327 Os_TE_381327 Chr4 21761455 21761454 - COPIA2-LTR_OS 6433 0.0007 (2/2993) 0 * Os_TE_381328 Os_TE_381324 Chr4 21760709 21760710 - RIRE2_LTR 11306 0.0003 (1/2995) 0 * Os_TE_381323 Os_TE_381323 Chr4 21760705 21760704 - ORSgTERT00201216 11284 0.0003 (1/2997) 0 * Os_TE_381324 Os_TE_381321 Chr4 21760060 21760059 + ORSgTETN00200005 1121 0.0047 (14/2990) 0 * Os_TE_381320 Os_TE_381320 Chr4 21760059 21760060 + CACTA-H 1152 0.0050 (15/2991) 0 * Os_TE_381321 Os_TE_381297 Chr4 21747929 21747930 - OSTE33 1012 0.0007 (2/2960) 0 * Os_TE_381296 Os_TE_381296 Chr4 21747921 21747920 - OSTE33 1012 0.0007 (2/2963) 0 * Os_TE_381297 Os_TE_381281 Chr4 21741595 21741594 + COPI2_LTR 4733 0.0003 (1/2991) 0 * * Os_TE_381273 Chr4 21738547 21738548 - ORSiTETNOOT00200 3563 0.0071 (21/2960) 0 * * Os_TE_381246 Chr4 21722488 21722487 + ORSgTETNOOT01834 251 0.0131 (39/2986) 0 * * Os_TE_381244 Chr4 21721710 21721711 + RETRO2A_LTR 12895 0.0004 (1/2628) 0 * * Os_TE_381229 Chr4 21714810 21714811 - MuDR4_OS 7610 0.0133 (39/2932) 0 * * Os_TE_381216 Chr4 21706035 21706036 - UNIQUE 158 0.0765 (227/2968) 0 * * Os_TE_381210 Chr4 21701284 21701285 + ORSgTETNOOT00012 241 0.0003 (1/2995) 0 * * Os_TE_381203 Chr4 21698634 21698635 - ORSiTETNOOT00200 3563 0.0074 (21/2828) 0 * Os_TE_381202 Os_TE_381202 Chr4 21698627 21698626 + TWIFB1 3737 0.0072 (20/2789) 0 * Os_TE_381203 Os_TE_381195 Chr4 21694138 21694139 + ID-4 284 0.0017 (5/2989) 0 * Os_TE_381194 Os_TE_381194 Chr4 21694136 21694135 - ID-4 284 0.0017 (5/2992) 0 * Os_TE_381195 Os_TE_381190 Chr4 21692516 21692515 + ORSgTEMT01400031 216 0.0023 (7/2980) 0 * * Os_TE_381170 Chr4 21687103 21687104 - SC-8_LTR 4951 0.0003 (1/2996) 0 * Os_TE_381169 Os_TE_381169 Chr4 21687099 21687098 + SC-8_LTR 4951 0.0003 (1/2997) 0 * Os_TE_381170 Os_TE_381162 Chr4 21682321 21682320 + TWIFBIG 3567 0.0118 (35/2978) 0 * * Os_TE_381156 Chr4 21680878 21680879 - ORSgTEMT02400179 221 0.0007 (2/2944) 0 * Os_TE_381155 Os_TE_381155 Chr4 21680877 21680876 - TYPEM 227 0.0007 (2/2946) 0 * Os_TE_381156 Os_TE_381144 Chr4 21678768 21678769 - RIRE2_LTR 11306 0.0003 (1/2990) 0 * Os_TE_381143 Os_TE_381143 Chr4 21678764 21678763 - ORSgTERT00201216 11284 0.0003 (1/2991) 0 * Os_TE_381144 Os_TE_381116 Chr4 21671145 21671146 - OSTE24 683 0.0031 (9/2894) 0 * Os_TE_381115 Os_TE_381115 Chr4 21671135 21671134 - OSTE24 683 0.0035 (10/2894) 0 * Os_TE_381116 Os_TE_381084 Chr4 21664394 21664395 - ORSgTEMT01601493 303 0.0007 (2/2970) 0 * * Os_TE_381064 Chr4 21650687 21650686 - SC-3_LTR 5748 0.0003 (1/2982) 0 * * Os_TE_381063 Chr4 21646339 21646338 - TRUNCATOR 2918 0.0007 (2/2989) 0 * * Os_TE_381050 Chr4 21638978 21638979 - SC-3_LTR 5748 0.0017 (5/2997) 0 * Os_TE_381049 Os_TE_381049 Chr4 21638974 21638973 + SC-3_LTR 5748 0.0017 (5/2996) 0 * Os_TE_381050 Os_TE_381048 Chr4 21637952 21637953 + ORSiTERTOOT00226 792 0.0040 (12/2988) 0 * Os_TE_381047 Os_TE_381047 Chr4 21637948 21637947 - SZ-22_LTR 4403 0.0040 (12/2988) 0 * Os_TE_381048 Os_TE_381045 Chr4 21637621 21637622 + NDNA1TNA_OS 334 0.0071 (21/2973) 0 * Os_TE_381044 Os_TE_381044 Chr4 21637618 21637617 - NDNA1TNA_OS 334 0.0074 (22/2973) 0 * Os_TE_381045 Os_TE_381034 Chr4 21636090 21636091 - SZ-22_LTR 4403 0.0003 (1/2989) 0 * Os_TE_381033 Os_TE_381033 Chr4 21636086 21636085 + ORSiTERTOOT00226 792 0.0003 (1/2989) 0 * Os_TE_381034 Os_TE_381023 Chr4 21629286 21629285 - ORSgTEMT02000041 194 0.0010 (3/2947) 0 * * Os_TE_381022 Chr4 21629188 21629189 + ORSgTETNOOT01219 231 0.0094 (28/2988) 0 * Os_TE_381021 Os_TE_381021 Chr4 21629182 21629181 + ORSgTETNOOT00908 242 0.0087 (26/2985) 0 * Os_TE_381022 Os_TE_381020 Chr4 21629137 21629136 + ORSgTEMT01601591 242 0.0003 (1/2984) 0 * * Os_TE_381004 Chr4 21621688 21621689 - ORSgTEMT02400179 221 0.0074 (22/2987) 0 * Os_TE_381003 Os_TE_381003 Chr4 21621687 21621686 - TYPEM 227 0.0074 (22/2979) 0 * Os_TE_381004 Os_TE_381000 Chr4 21620706 21620707 + OLO24 345 0.0004 (1/2824) 0 * Os_TE_380999 Os_TE_380999 Chr4 21620704 21620703 - OLO24 345 0.0004 (1/2841) 0 * Os_TE_381000 Os_TE_380988 Chr4 21609637 21609636 - STOWAWAY44_OS 240 0.0010 (3/2995) 0 * Os_TE_380987 Os_TE_380987 Chr4 21609634 21609635 + STOWAWAY44_OS 240 0.0007 (2/2991) 0 * Os_TE_380988 Os_TE_380986 Chr4 21609117 21609116 - NDNA1TNA_OS 334 0.0003 (1/2996) 0 * * Os_TE_380979 Chr4 21607948 21607949 + OLO24 345 0.0007 (2/2954) 0 * Os_TE_380978 Os_TE_380978 Chr4 21607946 21607945 - OLO24 345 0.0007 (2/2993) 0 * Os_TE_380979 Os_TE_380957 Chr4 21602320 21602321 + AMYLTP 383 0.2430 (696/2864) 0 * Os_TE_380955 Os_TE_380955 Chr4 21602312 21602311 - AMYLTP 383 0.2085 (579/2777) 0 * Os_TE_380957 Os_TE_380952 Chr4 21602165 21602166 - STOWAWAY51_OS 246 0.0003 (1/2945) 0 * * Os_TE_380950 Chr4 21600766 21600767 - MPING 430 0.0034 (10/2970) 0 * Os_TE_380949 Os_TE_380949 Chr4 21600764 21600763 + MPING 430 0.0030 (9/2973) 0 * Os_TE_380950 Os_TE_380948 Chr4 21598624 21598623 - ORSgTEMT01601493 303 0.0007 (2/2998) 0 * Os_TE_380947 Os_TE_380947 Chr4 21598621 21598622 - ORSgTEMT01601493 303 0.0007 (2/2995) 0 * Os_TE_380948 Os_TE_380943 Chr4 21598396 21598395 + ORSgTEMT00501326 148 0.0003 (1/2985) 0 * * Os_TE_380939 Chr4 21597551 21597550 - ORSgTEMT02400179 221 0.0010 (3/2999) 0 * Os_TE_380938 Os_TE_380938 Chr4 21597549 21597550 - TYPEM 227 0.0010 (3/2999) 0 * Os_TE_380939 Os_TE_380933 Chr4 21592881 21592882 + ORSgTERT00100389 275 0.0003 (1/2986) 0 * * Os_TE_380922 Chr4 21590286 21590287 - RETRO1_LTR 8314 0.0017 (5/2987) 0 * Os_TE_380921 Os_TE_380921 Chr4 21590282 21590281 + RETRO2A_LTR 12895 0.0017 (5/2985) 0 * Os_TE_380922 Os_TE_380915 Chr4 21588716 21588715 - TRUNCATOR 2918 0.0006 (1/1809) -1 * Os_TE_380914 Os_TE_380914 Chr4 21588715 21588716 + TRUNCATOR 2918 0.0008 (2/2662) -1 * Os_TE_380915 Os_TE_380909 Chr4 21588136 21588137 - NDNA1TNA_OS 334 0.0007 (2/2923) 0 * Os_TE_380908 Os_TE_380908 Chr4 21588135 21588134 + NDNA1TNA_OS 334 0.0003 (1/2911) 0 * Os_TE_380909 Os_TE_380883 Chr4 21569271 21569272 - ORSgTEMT02400179 221 0.0088 (26/2968) 0 * Os_TE_380882 Os_TE_380882 Chr4 21569270 21569269 - TYPEM 227 0.0094 (28/2978) 0 * Os_TE_380883 Os_TE_380872 Chr4 21568713 21568714 - COPIA2-LTR_OS 6433 0.0150 (45/2993) 0 * * Os_TE_380871 Chr4 21568074 21568075 - RIREX_LTR 8828 0.0003 (1/2997) 0 * Os_TE_380870 Os_TE_380870 Chr4 21568070 21568069 + RIREX_LTR 8828 0.0003 (1/2997) 0 * Os_TE_380871 Os_TE_380857 Chr4 21559298 21559299 + NDNA1TNA_OS 334 0.0003 (1/2976) 0 * * Os_TE_380848 Chr4 21558602 21558603 + MUDRN5_OS 374 0.0021 (6/2910) 0 * * Os_TE_380846 Chr4 21558133 21558132 - RIREX_LTR 8828 0.0004 (1/2436) 0 * * Os_TE_380830 Chr4 21551995 21551996 - SC-8_LTR 4951 0.0252 (75/2982) 0 * * Os_TE_380823 Chr4 21547320 21547319 - ORSgTEMT00300160 419 0.0020 (6/2999) 0 * * Os_TE_380822 Chr4 21547319 21547320 + ORSiTEMT00300001 383 0.0023 (7/2999) 0 * Os_TE_380821 Os_TE_380821 Chr4 21547314 21547313 + ORSgTEMT00300063 413 0.0020 (6/2996) 0 * Os_TE_380822 Os_TE_380819 Chr4 21546671 21546672 + HARB-1_OS 5166 0.0023 (7/2993) 0 * Os_TE_380818 Os_TE_380818 Chr4 21546669 21546668 - HARB-1_OS 5166 0.0023 (7/2989) 0 * Os_TE_380819 Os_TE_380817 Chr4 21546361 21546360 + ORSgTEMT01601122 212 0.0017 (5/2986) 0 * * Os_TE_380813 Chr4 21544782 21544781 + ORSgTEMT01601591 242 0.0221 (66/2991) 0 * Os_TE_380812 Os_TE_380812 Chr4 21544776 21544777 + STOWAWAY51_OS 246 0.0217 (65/2992) 0 * Os_TE_380813 Os_TE_380809 Chr4 21544199 21544200 + TRUNCATOR 2918 0.0010 (3/2972) 0 * * Os_TE_380808 Chr4 21544189 21544190 - RETRO2_LTR 12874 0.0017 (5/2961) 0 * Os_TE_380807 Os_TE_380807 Chr4 21544185 21544184 + RETRO2_LTR 12874 0.0024 (7/2961) 0 * Os_TE_380808 Os_TE_380799 Chr4 21539282 21539281 + HELITRON7_OS 10153 0.0017 (5/2985) 0 * * Os_TE_380797 Chr4 21538813 21538812 - ORSgTEMT02400179 221 0.0123 (37/2997) 0 * Os_TE_380796 Os_TE_380796 Chr4 21538811 21538812 - ORSgTEMT02400064 212 0.0120 (36/2995) 0 * Os_TE_380797 Os_TE_380795 Chr4 21538775 21538776 + RETRO1_LTR 8314 0.0007 (2/2996) 0 * Os_TE_380794 Os_TE_380794 Chr4 21538771 21538770 + RETRO2A_LTR 12895 0.0007 (2/2993) 0 * Os_TE_380795 Os_TE_380793 Chr4 21538394 21538395 - OSTE24 683 0.0040 (12/2996) 0 * Os_TE_380792 Os_TE_380792 Chr4 21538383 21538382 - OSTE24 683 0.0043 (13/2993) 0 * Os_TE_380793 Os_TE_380782 Chr4 21535285 21535286 + MERMITEJ 1498 0.0112 (33/2957) 0 * * Os_TE_380780 Chr4 21535271 21535270 + MERMITEA 1710 0.0007 (2/2944) 0 * * Os_TE_380775 Chr4 21533873 21533874 + CACTA-M 1129 0.0020 (6/2977) 0 * Os_TE_380774 Os_TE_380774 Chr4 21533871 21533870 - CACTA-M 1129 0.0017 (5/2979) 0 * Os_TE_380775 Os_TE_380772 Chr4 21533177 21532967 - ORSgTEMT01400022 212 0.6058 (1609/2656) 1 Intact * Os_TE_380760 Chr4 21532709 21532710 + ORSgTEMT01400031 216 0.0086 (25/2896) 0 * * Os_TE_380756 Chr4 21532067 21532066 - COPI2_LTR 4733 0.0004 (1/2829) 0 * * Os_TE_380753 Chr4 21531850 21531517 - ORSgTEMT00100124 360 0.5621 (1562/2779) 1 Intact * Os_TE_380749 Chr4 21531487 21531261 + ORSgTEMT00900079 241 0.7220 (1618/2241) 1 Intact * Os_TE_380740 Chr4 21530602 21530601 - NDNA1TNA_OS 334 0.0025 (7/2818) 0 * * Os_TE_380738 Chr4 21529800 21529663 + ORSgTEMT00500201 140 0.5469 (1639/2997) 1 Intact Os_TE_380736 Os_TE_380736 Chr4 21529657 21529797 - ORSgTETNOOT02610 140 0.5467 (1638/2996) 1 Intact Os_TE_380738 Os_TE_380733 Chr4 21529570 21529306 - INDITTO 263 0.4906 (1467/2990) 1 Intact Os_TE_380732 Os_TE_380732 Chr4 21529306 21529570 - ORSgTETNOOT01337 247 0.4898 (1466/2993) 1 Intact Os_TE_380733 Os_TE_380728 Chr4 21528758 21528993 - ORSgTEMT01601834 234 0.5468 (1594/2915) 1 Intact * Os_TE_380727 Chr4 21528243 21528244 - SZ-35LTR 3853 0.0027 (8/2984) 0 * Os_TE_380726 Os_TE_380726 Chr4 21528239 21528238 + RETROSAT4_LTR 13504 0.0027 (8/2956) 0 * Os_TE_380727 Os_TE_380717 Chr4 21526363 21526364 - INDITTO 263 0.0038 (11/2923) 0 * Os_TE_380716 Os_TE_380716 Chr4 21526361 21526360 + INDITTO 263 0.0034 (10/2935) 0 * Os_TE_380717 Os_TE_380705 Chr4 21523800 21523801 + TREP220 109 0.0894 (266/2974) 0 * * Os_TE_380703 Chr4 21523667 21523668 + COPIA2-LTR_OS 6433 0.0003 (1/2977) 0 * Os_TE_380702 Os_TE_380702 Chr4 21523663 21523662 - COPIA2-LTR_OS 6433 0.0003 (1/2975) 0 * Os_TE_380703 Os_TE_380700 Chr4 21522761 21522762 + RETRO2_LTR 12874 0.0010 (3/2974) 0 * * Os_TE_380697 Chr4 21522133 21522132 + ORSgTEMT01601122 212 0.0007 (2/2981) 0 * * Os_TE_380694 Chr4 21521599 21521598 - ORSgTEMT01602413 239 0.1123 (336/2992) 0 * * Os_TE_380684 Chr4 21515493 21515494 + ORSiTERTOOT00296 5553 0.0003 (1/2975) 0 * Os_TE_380683 Os_TE_380683 Chr4 21515489 21515488 - SC-3_LTR 5748 0.0003 (1/2974) 0 * Os_TE_380684 Os_TE_380681 Chr4 21514916 21514915 - ORSgTEMT00101174 225 0.0017 (5/2976) 0 * * Os_TE_380678 Chr4 21514663 21514894 - STOWAWAY43_OS 233 0.8150 (2414/2962) 1 Intact * Os_TE_380670 Chr4 21511919 21511920 - INDITTO 263 0.0282 (83/2943) 0 * Os_TE_380669 Os_TE_380669 Chr4 21511917 21511916 + INDITTO 263 0.0279 (83/2972) 0 * Os_TE_380670 Os_TE_380668 Chr4 21511686 21511687 - ORSiTERT00200154 9386 0.0283 (73/2582) 0 * Os_TE_380667 Os_TE_380667 Chr4 21511680 21511679 + TRUNCATOR 2918 0.0239 (36/1505) 0 * Os_TE_380668 Os_TE_380661 Chr4 21511076 21511077 - CACTA-L 1162 0.1835 (530/2888) 0 * * Os_TE_380660 Chr4 21510797 21510798 - NDNA1TNA_OS 334 0.1545 (408/2641) 0 * Os_TE_380659 Os_TE_380659 Chr4 21510796 21510795 + NDNA1TNA_OS 334 0.1370 (403/2941) 0 * Os_TE_380660 Os_TE_380654 Chr4 21509857 21509542 + ORSgTEMT00101457 316 0.4376 (1224/2797) 1 Intact * Os_TE_380650 Chr4 21507729 21507728 + ORSgTEMT00500864 109 0.0963 (272/2824) 0 * * Os_TE_380643 Chr4 21506996 21506995 + CRATA-2 851 0.0016 (2/1272) 0 * * Os_TE_380642 Chr4 21506385 21506386 + F569 228 0.0010 (3/2997) 0 * * Os_TE_380638 Chr4 21501002 21501001 - CACTA-H 1152 0.0014 (4/2901) 0 * Os_TE_380637 Os_TE_380637 Chr4 21501001 21501002 + CACTA-B 1103 0.0014 (4/2907) 0 * Os_TE_380638 Os_TE_380634 Chr4 21500403 21500404 + SZ-9LTR 965 0.0004 (1/2827) 0 * Os_TE_380633 Os_TE_380633 Chr4 21500399 21500398 - SZ-9LTR 965 0.0004 (1/2826) 0 * Os_TE_380634 Os_TE_380632 Chr4 21500302 21500303 + ORSgTEMT00501415 140 0.0018 (5/2839) 0 * Os_TE_380631 Os_TE_380631 Chr4 21500300 21500299 - ORSgTEMT00502214 125 0.0018 (5/2835) 0 * Os_TE_380632 Os_TE_380622 Chr4 21498387 21498388 - RETRO2A_LTR 12895 0.0014 (4/2833) 0 * * Os_TE_380619 Chr4 21498167 21498168 + ORSiTERTOOT00438 5660 0.0018 (5/2820) 0 * * Os_TE_380612 Chr4 21494498 21494499 + ORSgTEMT00501629 149 0.0049 (14/2873) 0 * * Os_TE_380611 Chr4 21494317 21494318 + ORSgTETNOOT01930 140 0.0017 (5/2876) 0 * Os_TE_380610 Os_TE_380610 Chr4 21494315 21494314 + ORSgTEMT00502171 134 0.0017 (5/2888) 0 * Os_TE_380611 Os_TE_380606 Chr4 21493213 21493212 - TYPEU1 380 0.0031 (9/2881) 0 * * Os_TE_380602 Chr4 21491763 21491764 + RIREX_LTR 8828 0.0003 (1/2966) 0 * Os_TE_380601 Os_TE_380601 Chr4 21491759 21491758 - RIREX_LTR 8828 0.0004 (1/2593) 0 * Os_TE_380602 Os_TE_380600 Chr4 21491723 21491722 - TYPEM 227 0.0003 (1/2947) 0 * Os_TE_380599 Os_TE_380599 Chr4 21491722 21491723 - ORSgTEMT02400246 177 0.0003 (1/2971) 0 * Os_TE_380600 Os_TE_380560 Chr4 21476338 21476337 + RETROSAT3_LTR 11537 0.0040 (12/2973) 0 * * Os_TE_380539 Chr4 21472142 21472143 - SZ-48LTR 3632 0.0010 (3/2982) 0 * Os_TE_380538 Os_TE_380538 Chr4 21472138 21472137 + SZ-48LTR 3632 0.0010 (3/2972) 0 * Os_TE_380539 Os_TE_380535 Chr4 21471967 21471966 - RIREX_LTR 8828 0.0003 (1/2978) 0 * * Os_TE_380534 Chr4 21471899 21471900 + SZ-48LTR 3632 0.0024 (7/2973) 0 * * Os_TE_380531 Chr4 21468893 21468894 + RIREX_LTR 8828 0.0157 (47/2989) 0 * Os_TE_380530 Os_TE_380530 Chr4 21468889 21468888 - RIREX_LTR 8828 0.0154 (46/2991) 0 * Os_TE_380531 Os_TE_380524 Chr4 21466507 21466508 + ORSgTEMT01702268 154 0.0017 (5/2993) 0 * Os_TE_380523 Os_TE_380523 Chr4 21466503 21466502 - ORSgTEMT01701236 147 0.0017 (5/2994) 0 * Os_TE_380524 Os_TE_380522 Chr4 21466393 21466392 + OSTE15 1168 0.0033 (10/2988) 0 * * Os_TE_380520 Chr4 21465721 21465720 - COWARD 200 0.0017 (5/2979) 0 * * Os_TE_380517 Chr4 21465675 21465674 - COWARD 200 0.0044 (13/2972) 0 * * Os_TE_380510 Chr4 21461969 21461968 + STOWAWAY51_OS 246 0.0017 (5/2993) 0 * Os_TE_380509 Os_TE_380509 Chr4 21461963 21461964 + ORSgTEMT01601591 242 0.0017 (5/2993) 0 * Os_TE_380510 Os_TE_380506 Chr4 21459789 21459790 + ORSgTEMT00600408 352 0.0071 (21/2967) 0 * Os_TE_380505 Os_TE_380505 Chr4 21459787 21459786 - CASTAWAY 364 0.0064 (19/2971) 0 * Os_TE_380506 Os_TE_380499 Chr4 21458436 21458437 + INDITTO 263 0.0169 (50/2964) 0 * Os_TE_380498 Os_TE_380498 Chr4 21458434 21458433 - INDITTO 263 0.0166 (49/2958) 0 * Os_TE_380499 Os_TE_380491 Chr4 21457967 21457966 + MDM2 312 0.0078 (23/2964) 0 * * Os_TE_380489 Chr4 21457833 21457834 + RETRO2_LTR 12874 0.0007 (2/2959) 0 * * Os_TE_380488 Chr4 21457721 21457720 + F569 228 0.0010 (3/2967) 0 * * Os_TE_380487 Chr4 21457668 21457667 + RIREX_LTR 8828 0.0030 (9/2959) 0 * * Os_TE_380477 Chr4 21456393 21456394 - STOWAWAY51_OS 246 0.0013 (4/2980) 0 * * Os_TE_380460 Chr4 21451640 21451639 - STOWAWAY48_OS 261 0.0004 (1/2838) 0 * * Os_TE_380459 Chr4 21451400 21451399 + MERMITEH 1307 0.0833 (249/2988) 0 * * Os_TE_380449 Chr4 21450542 21450543 + ORSgTETNOOT01219 231 0.0051 (15/2932) 0 * Os_TE_380448 Os_TE_380448 Chr4 21450535 21450534 + ORSgTETNOOT00908 242 0.0049 (14/2857) 0 * Os_TE_380449 Os_TE_380423 Chr4 21446069 21446070 + F770 284 0.0020 (6/2984) 0 * * Os_TE_380421 Chr4 21445559 21445560 + MuDR3_OS 8604 0.0652 (189/2899) 0 * Os_TE_380420 Os_TE_380420 Chr4 21445551 21445550 - MuDR3_OS 8604 0.0738 (215/2912) 0 * Os_TE_380421 Os_TE_380388 Chr4 21426234 21426235 - AMYLTP 383 0.0047 (14/2979) 0 * Os_TE_380387 Os_TE_380387 Chr4 21426226 21426225 + AMYLTP 383 0.0047 (14/2977) 0 * Os_TE_380388 Os_TE_380380 Chr4 21422961 21422962 + COPI2_LTR 4733 0.0007 (2/2991) 0 * Os_TE_380379 Os_TE_380379 Chr4 21422957 21422956 - COPI2_LTR 4733 0.0007 (2/2991) 0 * Os_TE_380380 Os_TE_380378 Chr4 21422919 21422918 + ORSgTETNOOT00908 242 0.0010 (3/2988) 0 * * Os_TE_380377 Chr4 21421986 21421987 + RPO_OS 1983 0.0064 (19/2986) 0 * * Os_TE_380370 Chr4 21417984 21417983 + OSTE15 1168 0.0007 (2/2980) 0 * * Os_TE_380369 Chr4 21417480 21417481 - ORSgTEMT02000041 194 0.0074 (22/2991) 0 * * Os_TE_380367 Chr4 21416795 21416796 - NDNA1TNA_OS 334 0.0003 (1/2978) 0 * Os_TE_380366 Os_TE_380366 Chr4 21416793 21416792 + NDNA1TNA_OS 334 0.0003 (1/2979) 0 * Os_TE_380367 Os_TE_380363 Chr4 21414175 21414174 + ORSgTETNOOT00908 242 0.0004 (1/2823) 0 * * Os_TE_380355 Chr4 21413005 21413006 + MuDR4_OS 7610 0.0010 (3/2910) 0 * * Os_TE_380354 Chr4 21412937 21412938 - TYPEM 227 0.0018 (5/2839) 0 * * Os_TE_380352 Chr4 21412324 21412325 - RETROSAT3_LTR 11537 0.0040 (12/2969) 0 * Os_TE_380351 Os_TE_380351 Chr4 21412320 21412319 + RETROSAT2LTRA 3112 0.0037 (11/2965) 0 * Os_TE_380352 Os_TE_380344 Chr4 21411325 21411326 - RETRO2_LTR 12874 0.0044 (13/2978) 0 * * Os_TE_380340 Chr4 21410359 21410360 + DS-RICE4N 715 0.0020 (6/2976) 0 * Os_TE_380339 Os_TE_380339 Chr4 21410352 21410351 - DS-RICE2N 613 0.0017 (5/2978) 0 * Os_TE_380340 Os_TE_380335 Chr4 21409493 21409494 - ORSiTETNOOT00216 3569 0.0114 (34/2991) 0 * Os_TE_380334 Os_TE_380334 Chr4 21409486 21409485 + TWIFBIG 3567 0.0104 (31/2981) 0 * Os_TE_380335 Os_TE_380330 Chr4 21408831 21408832 - RETRO1_LTR 8314 0.0030 (9/2990) 0 * Os_TE_380329 Os_TE_380329 Chr4 21408827 21408826 + RETRO1_LTR 8314 0.0027 (8/2993) 0 * Os_TE_380330 Os_TE_380325 Chr4 21408356 21408355 - TYPEM 227 0.0003 (1/2990) 0 * * Os_TE_380309 Chr4 21407302 21407303 - ORSgTEMT00900965 216 0.0014 (4/2880) 0 * * Os_TE_380302 Chr4 21406846 21406847 + RETROSAT2LTRA 3112 0.0121 (36/2972) 0 * * Os_TE_380281 Chr4 21398089 21398090 - RETRO1_LTR 8314 0.0026 (6/2300) 0 * Os_TE_380280 Os_TE_380280 Chr4 21398085 21398084 + RETRO1_LTR 8314 0.0030 (7/2300) 0 * Os_TE_380281 Os_TE_380261 Chr4 21395290 21395291 - TRUNCATOR2_LTR 2904 0.0036 (8/2239) 0 * Os_TE_380260 Os_TE_380260 Chr4 21395286 21395285 + ORSiTERTOOT00028 8600 0.0036 (8/2238) 0 * Os_TE_380261 Os_TE_380258 Chr4 21395215 21395214 - RETRO1_LTR 8314 0.0035 (8/2271) 0 * * Os_TE_380196 Chr4 21385967 21385968 - RIREX_LTR 8828 0.0080 (24/2983) 0 * Os_TE_380195 Os_TE_380195 Chr4 21385963 21385962 + RIREX_LTR 8828 0.0084 (25/2994) 0 * Os_TE_380196 Os_TE_380192 Chr4 21385024 21385025 - RETRO1_LTR 8314 0.0020 (6/2987) 0 * Os_TE_380191 Os_TE_380191 Chr4 21385020 21385019 + RETRO2_LTR 12874 0.0020 (6/2987) 0 * Os_TE_380192 Os_TE_380182 Chr4 21380911 21380910 + TWIFB1 3737 0.0021 (6/2904) 0 * * Os_TE_380180 Chr4 21379991 21379990 - NDNA1TNA_OS 334 0.0532 (155/2915) 0 * * Os_TE_380177 Chr4 21377074 21377075 - TESS 244 0.0013 (4/2994) 0 * * Os_TE_380174 Chr4 21373199 21373198 + ORSgTEMT02400034 225 0.0284 (84/2961) 0 * * Os_TE_380172 Chr4 21373139 21373138 + TELIA 141 0.0017 (5/2985) 0 * * Os_TE_380160 Chr4 21372233 21372234 + RETRO2A_LTR 12895 0.0206 (60/2907) 0 * * Os_TE_380138 Chr4 21369948 21369949 + MUDRN3_OS 903 0.0007 (2/2996) 0 * Os_TE_380137 Os_TE_380137 Chr4 21369940 21369939 + MUDRN3_OS 903 0.0007 (2/2995) 0 * Os_TE_380138 Os_TE_380135 Chr4 21369629 21369630 - RIREX_LTR 8828 0.0200 (60/2993) 0 * Os_TE_380134 Os_TE_380134 Chr4 21369625 21369624 + RIREX_LTR 8828 0.0204 (61/2997) 0 * Os_TE_380135 Os_TE_380132 Chr4 21369497 21369496 - SZ-9LTR 965 0.0010 (3/2987) 0 * * Os_TE_380117 Chr4 21366824 21366823 + TNR2A 152 0.0168 (50/2982) 0 * * Os_TE_380115 Chr4 21366792 21366793 - RIREX_LTR 8828 0.0003 (1/2958) 0 * Os_TE_380114 Os_TE_380114 Chr4 21366788 21366787 + RIREX_LTR 8828 0.0003 (1/2963) 0 * Os_TE_380115 Os_TE_380110 Chr4 21366159 21366158 + ORSgTETNOOT01028 232 0.0003 (1/2991) 0 * * Os_TE_380108 Chr4 21365509 21365510 + ORSgTETNOOT02316 263 0.0267 (72/2699) 0 * Os_TE_380107 Os_TE_380107 Chr4 21365507 21365506 + ORSgTETNOOT00221 261 0.0278 (75/2693) 0 * Os_TE_380108 Os_TE_380099 Chr4 21358368 21358367 - ORSgTEMT00300008 396 0.0114 (34/2995) 0 * * Os_TE_380091 Chr4 21355294 21355293 + ORSiTERT00400073 425 0.0004 (1/2767) 0 * * Os_TE_380089 Chr4 21354479 21354478 - STOWAWAY51_OS 246 0.0003 (1/2991) 0 * Os_TE_380088 Os_TE_380088 Chr4 21354473 21354474 + STOWAWAY51_OS 246 0.0003 (1/2993) 0 * Os_TE_380089 Os_TE_380081 Chr4 21353353 21353352 + NDNA1TNA_OS 334 0.0080 (24/2984) 0 * * Os_TE_380077 Chr4 21353147 21353148 + STOWAWAY44_OS 240 0.0003 (1/2991) 0 * * Os_TE_380071 Chr4 21352272 21352271 + NDNA1TNA_OS 334 0.0003 (1/2990) 0 * Os_TE_380070 Os_TE_380070 Chr4 21352271 21352272 + ORSgTEMT00101674 340 0.0003 (1/2989) 0 * Os_TE_380071 Os_TE_380068 Chr4 21352189 21352190 - ORSgTEMT00501711 149 0.0010 (3/2991) 0 * * Os_TE_380054 Chr4 21348428 21348429 + RETRO1_LTR 8314 0.0003 (1/2902) 0 * * Os_TE_380051 Chr4 21348405 21348406 + TNR2A 152 0.0601 (176/2930) 0 * * Os_TE_380044 Chr4 21347602 21347603 + SINE1OS 127 0.0222 (66/2979) 0 * * Os_TE_380021 Chr4 21345687 21345688 + DASIA-2 1198 0.0650 (185/2847) 0 * Os_TE_380020 Os_TE_380020 Chr4 21345679 21345678 + DASIA-2 1198 0.0703 (201/2859) 0 * Os_TE_380021 Os_TE_380018 Chr4 21345598 21345597 + STOWAWAY44_OS 240 0.0004 (1/2673) 0 * Os_TE_380017 Os_TE_380017 Chr4 21345595 21345596 - STOWAWAY44_OS 240 0.0005 (1/2132) 0 * Os_TE_380018 Os_TE_380007 Chr4 21339181 21339180 + STOWAWAY51_OS 246 0.0146 (43/2938) 0 * Os_TE_380006 Os_TE_380006 Chr4 21339175 21339176 + ORSgTEMT01601591 242 0.0164 (48/2929) 0 * Os_TE_380007 Os_TE_380005 Chr4 21338572 21338571 - OSTE20 496 0.0054 (16/2979) 0 * * Os_TE_379994 Chr4 21333197 21333198 + JOUZHENA 607 0.0003 (1/2993) 0 * * Os_TE_379992 Chr4 21333173 21333174 + RIREX_LTR 8828 0.0007 (2/2996) 0 * Os_TE_379991 Os_TE_379991 Chr4 21333169 21333168 - RIREX_LTR 8828 0.0007 (2/2992) 0 * Os_TE_379992 Os_TE_379977 Chr4 21327157 21327158 + ORSgTETNOOT00908 242 0.0017 (5/2954) 0 * * Os_TE_379967 Chr4 21320851 21320850 - NDNA1TNA_OS 334 0.0017 (5/2928) 0 * Os_TE_379966 Os_TE_379966 Chr4 21320820 21320821 + NDNA1TNA_OS 334 0.0020 (6/2996) 0 * Os_TE_379967 Os_TE_379965 Chr4 21320460 21320459 + STOWAWAY51_OS 246 0.0020 (6/2984) 0 * Os_TE_379964 Os_TE_379964 Chr4 21320456 21320457 + TNR11 811 0.0020 (6/2959) 0 * Os_TE_379965 Os_TE_379961 Chr4 21320221 21320220 + ORSiTETNOOT00147 3619 0.0069 (19/2763) 0 * * Os_TE_379948 Chr4 21311312 21311313 - NDNA1TNA_OS 334 0.0020 (6/2954) 0 * Os_TE_379947 Os_TE_379947 Chr4 21311311 21311310 + NDNA1TNA_OS 334 0.0024 (7/2974) 0 * Os_TE_379948 Os_TE_379946 Chr4 21310211 21309873 + ORSgTEMT00100531 325 0.4016 (1186/2953) 1 Intact Os_TE_379944 Os_TE_379944 Chr4 21309873 21310212 + ORSgTEMT00100949 340 0.3997 (1165/2915) 1 Intact Os_TE_379946 Os_TE_379939 Chr4 21309342 21309343 + ORSgTEMT01602181 239 0.0020 (6/2977) 0 * * Os_TE_379937 Chr4 21309058 21309057 + RIREX_LTR 8828 0.0084 (25/2989) 0 * * Os_TE_379936 Chr4 21308728 21308729 + ENSPM4_OS 11610 0.0101 (30/2984) 0 * * Os_TE_379913 Chr4 21306205 21306206 - SZ-22_LTR 4403 0.0024 (7/2938) 0 * * Os_TE_379898 Chr4 21303536 21303537 - RIREX_LTR 8828 0.0003 (1/2923) 0 * * Os_TE_379896 Chr4 21303092 21303091 - ORSgTEMT02400246 177 0.0158 (47/2983) 0 * * Os_TE_379895 Chr4 21303091 21303092 - TYPEM 227 0.0160 (47/2944) 0 * * Os_TE_379894 Chr4 21303084 21303083 + ORSgTEMT01602181 239 0.0020 (6/2978) 0 * * Os_TE_379893 Chr4 21303081 21303082 + ORSgTEMT01602181 239 0.0020 (6/2935) 0 * * Os_TE_379892 Chr4 21302954 21302953 - RIRE2_LTR 11306 0.0003 (1/2951) 0 * * Os_TE_379891 Chr4 21302734 21302733 - STOWAWAY51_OS 246 0.0193 (55/2850) 0 * * Os_TE_379875 Chr4 21300826 21300825 + ORSgTETNOOT01834 251 0.0087 (26/2994) 0 * * Os_TE_379874 Chr4 21300439 21300440 - Cassandra_OS-LTR 764 0.0003 (1/2973) 0 * Os_TE_379873 Os_TE_379873 Chr4 21300435 21300434 + Cassandra_OS-LTR 764 0.0087 (26/2995) 0 * Os_TE_379874 Os_TE_379863 Chr4 21299375 21298125 + RETRO2_LTR 12874 0.4001 (1190/2974) 1 Solo_LTR * Os_TE_379859 Chr4 21298132 21298133 + ORSiTERTOOT00226 792 0.0024 (3/1262) 0 * * Os_TE_379853 Chr4 21296828 21296827 - RIREX_LTR 8828 0.0003 (1/2966) 0 * * Os_TE_379835 Chr4 21293709 21293710 + ORSiTERTOOT00020 2547 0.0061 (18/2967) 0 * Os_TE_379834 Os_TE_379834 Chr4 21293705 21293704 - OSCOPIA1_LTR 4754 0.0098 (29/2974) 0 * Os_TE_379835 Os_TE_379820 Chr4 21290968 21290969 - RIRE5-LTR_OS 6427 0.0037 (11/2995) 0 * Os_TE_379819 Os_TE_379819 Chr4 21290961 21290960 + RIRE5-LTR_OS 6427 0.0033 (10/2995) 0 * Os_TE_379820 Os_TE_379809 Chr4 21289605 21289606 + RETRO2_LTR 12874 0.0027 (8/2991) 0 * Os_TE_379808 Os_TE_379808 Chr4 21289601 21289600 - RETRO2_LTR 12874 0.0023 (7/2989) 0 * Os_TE_379809 Os_TE_379804 Chr4 21288847 21288848 + Cassandra_OS-LTR 764 0.0050 (15/2996) 0 * Os_TE_379803 Os_TE_379803 Chr4 21288843 21288842 - Cassandra_OS-LTR 764 0.0047 (14/2995) 0 * Os_TE_379804 Os_TE_379801 Chr4 21288516 21288517 - ORSgTETN00200001 10994 0.0010 (3/2998) 0 * Os_TE_379800 Os_TE_379800 Chr4 21288514 21288513 + SPMLIKE 10989 0.0010 (3/2997) 0 * Os_TE_379801 Os_TE_379799 Chr4 21288407 21288406 + NDNA1TNA_OS 334 0.1740 (519/2982) 0 * * Os_TE_379797 Chr4 21288195 21288196 - ORSgTETN00200001 10994 0.0030 (9/2982) 0 * Os_TE_379796 Os_TE_379796 Chr4 21288193 21288192 + SPMLIKE 10989 0.0054 (11/2044) 0 * Os_TE_379797 Os_TE_379782 Chr4 21281642 21281641 - SZ-36LTR 5825 0.0003 (1/2884) 0 * * Os_TE_379764 Chr4 21275580 21275581 - Cassandra_OS-LTR 764 0.0703 (206/2929) 0 * Os_TE_379763 Os_TE_379763 Chr4 21275576 21275575 + Cassandra_OS-LTR 764 0.0686 (201/2930) 0 * Os_TE_379764 Os_TE_379761 Chr4 21275127 21275126 - ORSgTEMT01601432 239 0.1486 (441/2967) 0 * * Os_TE_379755 Chr4 21270636 21270637 + ORSgTEMT00501222 152 0.0003 (1/2991) 0 * * Os_TE_379723 Chr4 21257865 21256387 - MERMITEB 1610 0.8435 (2285/2709) 1 Intact * Os_TE_379717 Chr4 21255441 21255442 - Cassandra_OS-LTR 764 0.0050 (15/2983) 0 * Os_TE_379716 Os_TE_379716 Chr4 21255437 21255436 - Cassandra_OS-LTR 764 0.0054 (15/2784) 0 * Os_TE_379717 Os_TE_379715 Chr4 21255423 21255424 - RETROSAT2LTR 12796 0.0140 (42/2998) 0 * Os_TE_379714 Os_TE_379714 Chr4 21255421 21255420 + RETROSAT2LTR 12796 0.0138 (41/2965) 0 * Os_TE_379715 Os_TE_379713 Chr4 21254428 21254429 + SPMLIKE 10989 0.0003 (1/2896) 0 * * Os_TE_379700 Chr4 21248182 21241530 + RIRE5-LTR_OS 6427 0.7690 (2274/2957) 1 Intact Os_TE_379691 Os_TE_379691 Chr4 21241525 21247541 - RIRE5-LTR_OS 6427 0.7701 (2294/2979) 1 Intact Os_TE_379700 Os_TE_379690 Chr4 21241516 21241517 - OLO24 345 0.0003 (1/2982) 0 * * Os_TE_379689 Chr4 21240896 21240895 + ORSgTEMT02400110 218 0.2398 (714/2978) 0 * * Os_TE_379675 Chr4 21237814 21237813 + CACTA-I 1124 0.0032 (9/2857) 0 * * Os_TE_379673 Chr4 21237177 21237178 + F569 228 0.0003 (1/2997) 0 * Os_TE_379672 Os_TE_379672 Chr4 21237175 21237174 - F569 228 0.0003 (1/2998) 0 * Os_TE_379673 Os_TE_379671 Chr4 21236767 21236766 + ORSgTETNOOT00032 218 0.0969 (289/2981) 0 * * Os_TE_379665 Chr4 21235750 21235749 - TEMPINDAS 4259 0.0041 (12/2929) 0 * * Os_TE_379656 Chr4 21231739 21231738 + RIREX_LTR 8828 0.0023 (7/2987) 0 * * Os_TE_379655 Chr4 21231470 21231469 - TNR2A 152 0.0010 (3/2994) 0 * * Os_TE_379643 Chr4 21222511 21222512 - RIREX_LTR 8828 0.0006 (1/1778) 0 * * Os_TE_379625 Chr4 21216003 21216004 - MuDR4_OS 7610 0.0014 (4/2888) 0 * * Os_TE_379617 Chr4 21213914 21213913 - RETROSAT4_LTR 13504 0.0059 (11/1868) 0 * * Os_TE_379612 Chr4 21207858 21207859 + COPIA2-LTR_OS 6433 0.1097 (205/1868) 0 * Os_TE_379611 Os_TE_379611 Chr4 21207854 21207853 - COPIA2-LTR_OS 6433 0.1118 (209/1869) 0 * Os_TE_379612 Os_TE_379608 Chr4 21206677 21206676 - ORSiTERT00100062 5674 0.0005 (1/1852) 0 * * Os_TE_379600 Chr4 21203866 21204004 + ORSgTEMT00501356 145 0.6143 (1830/2979) 1 Intact * Os_TE_379596 Chr4 21200468 21200467 + COPIA3-LTR_OS 5061 0.4015 (1196/2979) 0 * * Os_TE_379595 Chr4 21200304 21200303 - STOWAWAY51_OS 246 0.0122 (36/2943) 0 * * Os_TE_379579 Chr4 21193426 21193427 - SZ-35LTR 3853 0.0027 (5/1864) 0 * Os_TE_379578 Os_TE_379578 Chr4 21193422 21193421 + RETROSAT4_LTR 13504 0.0021 (4/1888) 0 * Os_TE_379579 Os_TE_379562 Chr4 21182014 21182015 + RIREX_LTR 8828 0.0005 (1/1847) 0 * Os_TE_379561 Os_TE_379561 Chr4 21182010 21182009 - RIREX_LTR 8828 0.0005 (1/1843) 0 * Os_TE_379562 Os_TE_379539 Chr4 21175877 21175878 + CACTA-H 1152 0.0027 (5/1864) 0 * Os_TE_379538 Os_TE_379538 Chr4 21175875 21175874 - ORSgTETN00200001 10994 0.0027 (5/1859) 0 * Os_TE_379539 Os_TE_379529 Chr4 21172581 21172582 + RIREX_LTR 8828 0.0005 (1/1829) 0 * Os_TE_379528 Os_TE_379528 Chr4 21172577 21172576 - RIREX_LTR 8828 0.0005 (1/1825) 0 * Os_TE_379529 Os_TE_379526 Chr4 21169283 21169284 - ORSgTETN00200001 10994 0.0005 (1/1855) 0 * Os_TE_379525 Os_TE_379525 Chr4 21169281 21169280 + SPMLIKE 10989 0.0005 (1/1857) 0 * Os_TE_379526 Os_TE_379512 Chr4 21164453 21164452 - SZ-35LTR 3853 0.0022 (5/2269) 0 * * Os_TE_379485 Chr4 21158523 21158522 + ORSgTETNOOT00908 242 0.0007 (2/2890) 0 * * Os_TE_379478 Chr4 21151573 21158516 - SZ-35LTR 3853 0.6123 (1815/2964) 1 Intact * Os_TE_379469 Chr4 21149645 21149644 + ORSgTEMT01602181 239 0.0034 (10/2948) 0 * Os_TE_379468 Os_TE_379468 Chr4 21149642 21149643 - ORSgTEMT01601432 239 0.0037 (11/2948) 0 * Os_TE_379469 Os_TE_379463 Chr4 21148777 21148776 + EnSpm-10_OS 11265 0.0007 (2/2978) 0 * * Os_TE_379458 Chr4 21147949 21147759 - ORSgTEMT03500002 194 0.6258 (1860/2972) 1 Intact Os_TE_379456 Os_TE_379456 Chr4 21147757 21147941 - SNAP-OL3 189 0.6269 (1860/2967) 1 Intact Os_TE_379458 Os_TE_379453 Chr4 21145357 21145358 + RIREX_LTR 8828 0.0037 (7/1917) 0 * Os_TE_379452 Os_TE_379452 Chr4 21145353 21145352 - RIREX_LTR 8828 0.0042 (8/1914) 0 * Os_TE_379453 Os_TE_379451 Chr4 21145070 21145071 + COPI2_LTR 4733 0.0005 (1/1923) 0 * Os_TE_379450 Os_TE_379450 Chr4 21145066 21145065 - COPI2_LTR 4733 0.0005 (1/1923) 0 * Os_TE_379451 Os_TE_379433 Chr4 21137276 21122652 - ORSgTETN00200001 10994 0.6120 (1778/2905) 1 Intact * Os_TE_379399 Chr4 21121192 21121191 + ORSgTEMT01600527 241 0.3696 (1044/2825) 0 * Os_TE_379398 Os_TE_379398 Chr4 21121189 21121190 - ORSgTEMT01602413 239 0.3900 (1133/2905) 0 * Os_TE_379399 Os_TE_379397 Chr4 21121030 21121029 - ORSgTEMT00501356 145 0.0072 (21/2925) 0 * Os_TE_379396 Os_TE_379396 Chr4 21121028 21121029 + ORSgTETNOOT00998 140 0.0069 (20/2887) 0 * Os_TE_379397 Os_TE_379383 Chr4 21113394 21113656 - STOWAWAY41_OS 264 0.6146 (1703/2771) 1 Intact * Os_TE_379380 Chr4 21113146 21113145 + ORSgTETN00200005 1121 0.0057 (16/2819) 0 * Os_TE_379379 Os_TE_379379 Chr4 21113145 21113146 + CACTA-H 1152 0.0068 (19/2810) 0 * Os_TE_379380 Os_TE_379373 Chr4 21109184 21112876 - RETROSAT4_LTR 13504 0.6231 (1858/2982) 1 Solo_LTR * Os_TE_379363 Chr4 21104520 21104519 + STOWAWAY51_OS 246 0.0041 (12/2960) 0 * * Os_TE_379361 Chr4 21101038 21103782 + HARB-N1_OS 2589 0.6068 (1764/2907) 1 Intact * Os_TE_379355 Chr4 21099278 21099277 - TRUNCATOR 2918 0.1600 (472/2950) 0 * * Os_TE_379353 Chr4 21098724 21098723 + MDR2 6967 0.0020 (6/2996) 0 * * Os_TE_379344 Chr4 21097167 21097166 - MuDR4_OS 7610 0.0024 (7/2952) 0 * * Os_TE_379324 Chr4 21094641 21094640 + RIRE2_LTR 11306 0.0011 (3/2704) 0 * * Os_TE_379322 Chr4 21094329 21094328 + SPMLIKE 10989 0.1375 (395/2873) 0 * * Os_TE_379311 Chr4 21092789 21092790 - COPIA2-LTR_OS 6433 0.0004 (1/2816) -1 * * Os_TE_379308 Chr4 21092147 21092148 - TRUNCATOR2_LTR 2904 0.0007 (2/2996) 0 * * Os_TE_379303 Chr4 21091712 21091711 - RIRE2_LTR 11306 0.0003 (1/2997) 0 * * Os_TE_379302 Chr4 21091687 21091688 + COPIA2-LTR_OS 6433 0.0721 (215/2983) 0 * Os_TE_379301 Os_TE_379301 Chr4 21091683 21091682 - COPIA2-LTR_OS 6433 0.0774 (232/2996) 0 * Os_TE_379302 Os_TE_379299 Chr4 21091571 21091572 - TYPEM 227 0.0675 (202/2994) 0 * Os_TE_379298 Os_TE_379298 Chr4 21091570 21091569 - ORSgTEMT02400179 221 0.0659 (197/2988) 0 * Os_TE_379299 Os_TE_379297 Chr4 21091420 21091421 - SZ-35LTR 3853 0.0169 (50/2952) 0 * Os_TE_379296 Os_TE_379296 Chr4 21091416 21091415 + RETROSAT4_LTR 13504 0.0181 (54/2986) 0 * Os_TE_379297 Os_TE_379293 Chr4 21090592 21090593 - COPIA2-LTR_OS 6433 0.0003 (1/2967) 0 * * Os_TE_379292 Chr4 21090313 21090314 - NDNA1TNA_OS 334 0.0017 (5/2910) 0 * Os_TE_379291 Os_TE_379291 Chr4 21090311 21090310 + NDNA1TNA_OS 334 0.0034 (10/2972) 0 * Os_TE_379292 Os_TE_379290 Chr4 21090285 21090286 - NDNA1TNA_OS 334 0.0111 (31/2801) 0 * * Os_TE_379288 Chr4 21089307 21089306 + RETROSAT4_LTR 13504 0.0040 (12/2990) 0 * * Os_TE_379287 Chr4 21088697 21088698 + SZ-22_LTR 4403 0.0004 (1/2721) 0 * Os_TE_379286 Os_TE_379286 Chr4 21088693 21088692 + SZ-22_LTR 4403 0.0004 (1/2722) 0 * Os_TE_379287 Os_TE_379284 Chr4 21088271 21088272 + OSMU4 4731 0.0959 (286/2981) 0 * * Os_TE_379281 Chr4 21087278 21087279 - ORSgTETN00200001 10994 0.0020 (6/2991) 0 * Os_TE_379280 Os_TE_379280 Chr4 21087276 21087275 + SPMLIKE 10989 0.0020 (6/2994) 0 * Os_TE_379281 Os_TE_379266 Chr4 21082940 21082939 - ENSPM4_OS 11610 0.0070 (21/2989) 0 * * Os_TE_379263 Chr4 21081184 21081183 + COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * * Os_TE_379252 Chr4 21079693 21079694 + RETROSAT2LTR 12796 0.0495 (143/2886) 0 * * Os_TE_379233 Chr4 21076509 21076510 - RETRO2_LTR 12874 0.0030 (9/2992) 0 * * Os_TE_379221 Chr4 21072411 21072412 - SZ-9LTR 965 0.0004 (1/2420) 0 * Os_TE_379220 Os_TE_379220 Chr4 21072407 21072406 + SZ-9LTR 965 0.0004 (1/2332) 0 * Os_TE_379221 Os_TE_379210 Chr4 21067169 21067168 - Cassandra_OS-LTR 764 0.3337 (846/2535) 0 * * Os_TE_379204 Chr4 21063433 21063432 + TESSBIG 4057 0.0131 (39/2975) 0 * * Os_TE_379198 Chr4 21056765 21061432 + SZ-48LTR 3632 0.5151 (1531/2972) 1 Intact * Os_TE_379197 Chr4 21056754 21056755 + RIRE2_LTR 11306 0.0003 (1/2972) 0 * * Os_TE_379196 Chr4 21056232 21056233 + RETROSAT4_LTR 13504 0.4033 (1190/2951) 0 * * Os_TE_379193 Chr4 21055990 21055991 - SZ-35LTR 3853 0.0003 (1/2916) 0 * Os_TE_379192 Os_TE_379192 Chr4 21055986 21055985 + RETROSAT4_LTR 13504 0.0003 (1/2918) 0 * Os_TE_379193 Os_TE_379188 Chr4 21055199 21055198 - Cassandra_OS-LTR 764 0.0006 (1/1752) 0 * * Os_TE_379176 Chr4 21050902 21050903 + MDM2 312 0.0006 (1/1774) 0 * * Os_TE_379170 Chr4 21048874 21048875 - ORSgTETN00200001 10994 0.0006 (1/1773) 0 * * Os_TE_379168 Chr4 21047249 21047250 - MuDR3_OS 8604 0.0011 (2/1775) 0 * Os_TE_379167 Os_TE_379167 Chr4 21047240 21047239 - MuDR3_OS 8604 0.0011 (2/1773) 0 * Os_TE_379168 Os_TE_379129 Chr4 21032068 21032069 - MUDRN3_OS 903 0.0044 (13/2940) 0 * Os_TE_379128 Os_TE_379128 Chr4 21032060 21032059 - MUDRN3_OS 903 0.0068 (20/2947) 0 * Os_TE_379129 Os_TE_379127 Chr4 21031978 21031979 - ORSgTETN00200001 10994 0.4081 (1183/2899) 0 * Os_TE_379126 Os_TE_379126 Chr4 21031976 21031975 + SPMLIKE 10989 0.4199 (1235/2941) 0 * Os_TE_379127 Os_TE_379112 Chr4 21029681 21029680 + RIREX_LTR 8828 0.0143 (42/2940) 0 * * Os_TE_379111 Chr4 21029369 21029370 - RETRO2_LTR 12874 0.0007 (2/2939) 0 * Os_TE_379110 Os_TE_379110 Chr4 21029365 21029364 + RETRO2_LTR 12874 0.0007 (2/2938) 0 * Os_TE_379111 Os_TE_379109 Chr4 21028953 21028954 + OSTE33 1012 0.0007 (2/2938) 0 * Os_TE_379108 Os_TE_379108 Chr4 21028944 21028943 - OSTE33 1012 0.0007 (2/2939) 0 * Os_TE_379109 Os_TE_379105 Chr4 21028285 21028284 - OSLINE1-2 7128 0.4205 (1228/2920) 0 * * Os_TE_379095 Chr4 21026974 21026975 - OSTE18 129 0.0071 (21/2949) 0 * * Os_TE_379094 Chr4 21026509 21026510 + COWARD-3 221 0.0071 (21/2951) 0 * * Os_TE_379089 Chr4 21025368 21025367 + RETROSAT4_LTR 13504 0.0014 (4/2936) 0 * * Os_TE_379087 Chr4 21023168 21023169 + RETROSAT4_LTR 13504 0.0025 (7/2832) 0 * Os_TE_379086 Os_TE_379086 Chr4 21023164 21023163 - SZ-35LTR 3853 0.0017 (5/2903) 0 * Os_TE_379087 Os_TE_379082 Chr4 21022908 21022909 - SUSU 279 0.0010 (3/2941) 0 * Os_TE_379081 Os_TE_379081 Chr4 21022906 21022905 + ORSgTEMT05000092 279 0.0010 (3/2937) 0 * Os_TE_379082 Os_TE_379078 Chr4 21022525 21022524 + RIRE2_LTR 11306 0.0024 (7/2941) 0 * * Os_TE_379075 Chr4 21021324 21021323 + SZ-46LTR 3360 0.0044 (7/1594) 0 * * Os_TE_379069 Chr4 21020457 21020458 - SEVERIN-2 1952 0.0031 (9/2932) 0 * * Os_TE_379066 Chr4 21019717 21019718 - RPO_OS 1983 0.0014 (4/2937) 0 * * Os_TE_379055 Chr4 21016997 21016996 - SZ-35LTR 3853 0.0003 (1/2900) 0 * * Os_TE_379051 Chr4 21015241 21015242 + RETROFIT2_LTR 4774 0.0051 (15/2962) 0 * * Os_TE_379043 Chr4 21013041 21013042 - ORSgTEMT02400179 221 0.0004 (1/2806) 0 * Os_TE_379042 Os_TE_379042 Chr4 21013040 21013039 - TYPEM 227 0.0004 (1/2826) 0 * Os_TE_379043 Os_TE_379012 Chr4 20993253 20992918 + ORSgTEMT00101341 314 0.4941 (1472/2979) 1 Intact * Os_TE_378997 Chr4 20959700 20959701 + Cassandra_OS-LTR 764 0.0039 (11/2840) 0 * Os_TE_378996 Os_TE_378996 Chr4 20959696 20959695 - Cassandra_OS-LTR 764 0.0038 (11/2897) 0 * Os_TE_378997 Os_TE_378983 Chr4 20955819 20955820 - COPI2_LTR 4733 0.0030 (9/2984) 0 * Os_TE_378982 Os_TE_378982 Chr4 20955815 20955814 + COPI2_LTR 4733 0.0030 (9/2982) 0 * Os_TE_378983 Os_TE_378975 Chr4 20952949 20952950 + CASTAWAY 364 0.0043 (12/2805) 0 * Os_TE_378974 Os_TE_378974 Chr4 20952947 20952946 - ORSgTEMT00600085 364 0.0043 (12/2797) 0 * Os_TE_378975 Os_TE_378972 Chr4 20949451 20949452 - SC-3_LTR 5748 0.0007 (2/2991) 0 * Os_TE_378971 Os_TE_378971 Chr4 20949447 20949446 + ORSiTERTOOT00296 5553 0.0007 (2/2991) 0 * Os_TE_378972 Os_TE_378962 Chr4 20941997 20941998 + ORSiTERTOOT00296 5553 0.0003 (1/2998) 0 * Os_TE_378961 Os_TE_378961 Chr4 20941993 20941992 - SC-3_LTR 5748 0.0003 (1/2997) 0 * Os_TE_378962 Os_TE_378959 Chr4 20940756 20940757 - RETRO1_LTR 8314 0.1000 (298/2980) 0 * Os_TE_378958 Os_TE_378958 Chr4 20940752 20940751 + RETRO2A_LTR 12895 0.1056 (305/2888) 0 * Os_TE_378959 Os_TE_378953 Chr4 20939697 20939698 - TYPEM 227 0.0003 (1/2964) 0 * * Os_TE_378952 Chr4 20939631 20939632 - TYPEM 227 0.0189 (56/2969) 0 * Os_TE_378951 Os_TE_378951 Chr4 20939630 20939629 - ORSgTEMT02400179 221 0.0185 (55/2976) 0 * Os_TE_378952 Os_TE_378940 Chr4 20934850 20934720 - ORSgTEMT00501591 149 0.5938 (1671/2814) 1 Intact * Os_TE_378936 Chr4 20934265 20934264 - TRUNCATOR 2918 0.0175 (48/2748) 0 * Os_TE_378935 Os_TE_378935 Chr4 20934264 20934265 + TRUNCATOR 2918 0.0339 (50/1474) 0 * Os_TE_378936 Os_TE_378921 Chr4 20928913 20928912 - ORSgTEMT01700983 152 0.4741 (1412/2978) 0 * Os_TE_378920 Os_TE_378920 Chr4 20928912 20928913 - ORSgTEMT01701056 154 0.4645 (1362/2932) 0 * Os_TE_378921 Os_TE_378918 Chr4 20927371 20927370 - NDNA1TNA_OS 334 0.0007 (2/2994) 0 * * Os_TE_378917 Chr4 20927150 20927149 - STOWAWAY51_OS 246 0.0003 (1/2997) 0 * Os_TE_378916 Os_TE_378916 Chr4 20927144 20927145 + STOWAWAY51_OS 246 0.0003 (1/2997) 0 * Os_TE_378917 Os_TE_378897 Chr4 20910994 20910993 - ORSgTERT00201216 11284 0.0007 (2/2985) 0 * * Os_TE_378865 Chr4 20898300 20898301 + ORSgTEMT01701591 154 0.5737 (1701/2965) 0 * * Os_TE_378864 Chr4 20898189 20898190 + COPIA2-LTR_OS 6433 0.0013 (4/2976) 0 * * Os_TE_378849 Chr4 20892525 20892526 - RIREX_LTR 8828 0.0014 (4/2820) 0 * Os_TE_378848 Os_TE_378848 Chr4 20892521 20892520 + RIREX_LTR 8828 0.0021 (6/2825) 0 * Os_TE_378849 Os_TE_378840 Chr4 20888134 20888135 + RIREX_LTR 8828 0.0040 (12/2972) 0 * * Os_TE_378833 Chr4 20886891 20886892 + YOUREN 286 0.0007 (2/2901) 0 * * Os_TE_378827 Chr4 20886250 20886249 + ORSgTEMT01602181 239 0.0145 (42/2890) 0 * * Os_TE_378799 Chr4 20879637 20879636 - ORSiTETNOOT00107 906 0.0017 (5/2980) 0 * * Os_TE_378794 Chr4 20879055 20877638 + OSTE33 1012 0.1847 (551/2983) 1 Intact Os_TE_378793 Os_TE_378793 Chr4 20877638 20879055 + OSTE33 1012 0.1877 (561/2989) 1 Intact Os_TE_378794 Os_TE_378792 Chr4 20876424 20876425 + ORSiTERTOOT00402 2660 0.0007 (2/2980) 0 * Os_TE_378791 Os_TE_378791 Chr4 20876420 20876419 - ORSiTERTOOT00402 2660 0.0007 (2/2977) 0 * Os_TE_378792 Os_TE_378789 Chr4 20873308 20873307 + ORSgTEMT00600295 361 0.0016 (4/2552) 0 * * Os_TE_378770 Chr4 20863047 20863046 + ORSgTERT00201086 9728 0.0006 (1/1553) 0 * * Os_TE_378758 Chr4 20860925 20860926 + ORSiCMCM00100019 2717 0.0014 (4/2957) 0 * Os_TE_378757 Os_TE_378757 Chr4 20860921 20860920 - TRUNCATOR2_LTR 2904 0.0027 (8/2961) 0 * Os_TE_378758 Os_TE_378750 Chr4 20856717 20856718 - SC-8_LTR 4951 0.0003 (1/2986) 0 * Os_TE_378749 Os_TE_378749 Chr4 20856713 20856712 + ORSiTERTOOT00381 4988 0.0003 (1/2979) 0 * Os_TE_378750 Os_TE_378728 Chr4 20840776 20841166 - ORSgTEMT00600085 364 0.2731 (807/2955) 1 Intact * Os_TE_378726 Chr4 20840359 20840360 + MuDR3_OS 8604 0.5112 (1389/2717) 0 * * Os_TE_378719 Chr4 20833657 20833915 + ORSgTETNOOT00014 296 0.2905 (856/2947) 1 Intact * Os_TE_378708 Chr4 20831222 20831223 - SINE03_OS 360 0.0134 (11/820) 0 * * Os_TE_378707 Chr4 20831187 20831188 - MuDR2_OS 6770 0.0021 (6/2909) 0 * Os_TE_378706 Os_TE_378706 Chr4 20831178 20831177 + MuDR2_OS 6770 0.0015 (4/2749) 0 * Os_TE_378707 Os_TE_378703 Chr4 20825073 20825074 - ORSgTEMT01601432 239 0.0040 (12/2988) 0 * * Os_TE_378692 Chr4 20822465 20822466 - MuDR3_OS 8604 0.1465 (432/2949) 0 * Os_TE_378691 Os_TE_378691 Chr4 20822457 20822456 + MuDR3_OS 8604 0.1419 (414/2917) 0 * Os_TE_378692 Os_TE_378688 Chr4 20817574 20817573 + OSTE15 1168 0.0043 (13/2992) 0 * * Os_TE_378681 Chr4 20815867 20815866 - COWARD 200 0.7219 (2116/2931) 0 * * Os_TE_378679 Chr4 20809943 20799872 - RETROSAT2LTRA 3112 0.7092 (622/877) 1 Intact Os_TE_378668 Os_TE_378668 Chr4 20799872 20809943 + RETROSAT2LTRA 3112 0.6820 (547/802) 1 Intact Os_TE_378679 Os_TE_378662 Chr4 20797145 20797146 - ORSgTETNOOT02166 197 0.5308 (949/1788) 0 * * Os_TE_378644 Chr4 20794079 20794336 - INDITTO 263 0.6511 (558/857) 1 Intact * Os_TE_378643 Chr4 20793850 20793849 - MuDR3_OS 8604 0.0097 (14/1445) 0 * * Os_TE_378641 Chr4 20793355 20793354 - SZ-22_LTR 4403 0.5358 (1595/2977) 0 * * Os_TE_378640 Chr4 20793152 20793153 + SC-7_LTR 4431 0.0050 (15/2996) 0 * * Os_TE_378636 Chr4 20789628 20789510 - ORSgTEMT01701019 130 0.2108 (618/2932) 1 Intact Os_TE_378635 Os_TE_378635 Chr4 20789510 20789628 - ORSgTEMT01701019 130 0.3232 (627/1940) 1 Intact Os_TE_378636 Os_TE_378634 Chr4 20789120 20789121 - OsSN3 183 0.7946 (2305/2901) 0 * Os_TE_378633 Os_TE_378633 Chr4 20789102 20789101 + CASINE 174 0.7969 (2330/2924) 0 * Os_TE_378634 Os_TE_378632 Chr4 20788681 20788427 + ORSgTEMT00901844 250 0.7606 (2272/2987) 1 Intact Os_TE_378626 Os_TE_378626 Chr4 20788424 20788678 - ORSgTEMT00900898 235 0.7611 (2275/2989) 1 Intact Os_TE_378632 Os_TE_378625 Chr4 20788029 20788030 + ORSgTETNOOT00908 242 0.0031 (9/2930) 0 * * Os_TE_378624 Chr4 20787996 20787814 + TNR2 157 0.7578 (2256/2977) 0.93 Intact Os_TE_378623 Os_TE_378623 Chr4 20787814 20787993 - TNR2 157 0.7590 (2267/2987) 1 Intact Os_TE_378624 Os_TE_378622 Chr4 20786657 20786658 - NDNA1TNA_OS 334 0.0003 (1/2991) 0 * * Os_TE_378599 Chr4 20777778 20777779 + SEVERIN-2 1952 0.0043 (11/2536) 0 * * Os_TE_378586 Chr4 20775548 20775549 + SZ-67LTR 1540 0.0008 (2/2468) 0 * Os_TE_378585 Os_TE_378585 Chr4 20775544 20775543 - SZ-67LTR 1540 0.0008 (2/2462) 0 * Os_TE_378586 Os_TE_378574 Chr4 20774424 20774423 + COPIA2-LTR_OS 6433 0.0004 (1/2517) 0 * * Os_TE_378544 Chr4 20767446 20767573 + ORSgTEMT00501165 134 0.8668 (2532/2921) 1 Intact * Os_TE_378541 Chr4 20767093 20767092 + ORSiTERTOOT00226 792 0.0004 (1/2551) 0 * * Os_TE_378522 Chr4 20757604 20757605 - ORSgTEMT00901138 254 0.7976 (2373/2975) 0 * * Os_TE_378521 Chr4 20757412 20754285 - RETROSAT2LTRA 3112 0.1828 (547/2993) 1 Intact * Os_TE_378510 Chr4 20744850 20744851 - OSTE14 885 0.7890 (2262/2867) 0 * * Os_TE_378506 Chr4 20739057 20739056 - F569 228 0.6690 (1973/2949) 0 * Os_TE_378505 Os_TE_378505 Chr4 20739055 20739056 + F569 228 0.6472 (1831/2829) 0 * Os_TE_378506 Os_TE_378454 Chr4 20714807 20714808 + ORSgTETNOOT00032 218 0.0010 (3/2998) 0 * * Os_TE_378451 Chr4 20713821 20713820 - OSTE18 129 0.0017 (5/2989) 0 * * Os_TE_378436 Chr4 20709766 20709767 + ORSiCMCM00100019 2717 0.0003 (1/2984) 0 * * Os_TE_378432 Chr4 20707743 20707405 + ORSgTEMT00100531 325 0.1531 (456/2979) 1 Intact Os_TE_378431 Os_TE_378431 Chr4 20707407 20707741 + NDNA1TNA_OS 334 0.1547 (460/2973) 1 Intact Os_TE_378432 Os_TE_378409 Chr4 20704330 20704331 + ORSgTEMT01601591 242 0.0003 (1/2983) 0 * * Os_TE_378399 Chr4 20701031 20701032 + ORSgTETNOOT01531 255 0.0004 (1/2709) 0 * Os_TE_378398 Os_TE_378398 Chr4 20701026 20701025 - ORSgTETNOOT00477 252 0.0003 (1/2992) 0 * Os_TE_378399 Os_TE_378346 Chr4 20692625 20692624 - ORSgTEMT02400246 177 0.0007 (2/2980) 0 * Os_TE_378345 Os_TE_378345 Chr4 20692624 20692625 - TYPEM 227 0.0003 (1/2978) 0 * Os_TE_378346 Os_TE_378318 Chr4 20688105 20688104 - MERMITE18B 1306 0.0250 (1/40) -1 * * Os_TE_378313 Chr4 20687385 20687386 - MPING 430 0.0017 (5/2919) 0 * * Os_TE_378302 Chr4 20685699 20685700 - RETRO1_LTR 8314 0.0007 (2/2726) 0 * Os_TE_378301 Os_TE_378301 Chr4 20685695 20685694 + RETRO2A_LTR 12895 0.0007 (2/2790) 0 * Os_TE_378302 Os_TE_378276 Chr4 20679756 20679757 - ORSgTERT00201216 11284 0.0996 (297/2981) 0 * Os_TE_378275 Os_TE_378275 Chr4 20679752 20679751 - RIRE2_LTR 11306 0.0995 (296/2976) 0 * Os_TE_378276 Os_TE_378267 Chr4 20670110 20670111 - RIREX_LTR 8828 0.0003 (1/2971) 0 * * Os_TE_378252 Chr4 20667626 20667625 - MPING 430 0.0003 (1/2924) 0 * * Os_TE_378249 Chr4 20666053 20666054 + INDITTO 263 0.0015 (4/2676) 0 * Os_TE_378248 Os_TE_378248 Chr4 20666051 20666050 - INDITTO 263 0.0015 (4/2697) 0 * Os_TE_378249 Os_TE_378234 Chr4 20664678 20664677 + ORSgTETNOOT00908 242 0.2089 (623/2983) 0 * * Os_TE_378231 Chr4 20661772 20661773 + COPI2_LTR 4733 0.0003 (1/2993) 0 * Os_TE_378230 Os_TE_378230 Chr4 20661768 20661767 - COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_378231 Os_TE_378207 Chr4 20653436 20653437 + ORSgTEMT00300063 413 0.0034 (10/2984) 0 * * Os_TE_378206 Chr4 20653340 20653339 + F770 284 0.0037 (11/2989) 0 * * Os_TE_378202 Chr4 20651570 20651569 + ORSgTEMT01602288 241 0.0950 (284/2988) 0 * Os_TE_378201 Os_TE_378201 Chr4 20651569 20651570 - ORSgTEMT01601432 239 0.0969 (290/2992) 0 * Os_TE_378202 Os_TE_378199 Chr4 20650227 20650226 - MICROPON-LIKE-1 428 0.8167 (508/622) 0 * * Os_TE_378191 Chr4 20648617 20648618 + SZ-17_LTR 3387 0.0003 (1/2994) 0 * Os_TE_378190 Os_TE_378190 Chr4 20648613 20648612 - SZ-17_LTR 3387 0.0003 (1/2992) 0 * Os_TE_378191 Os_TE_378184 Chr4 20640153 20639808 - NDNA2TNA_OS 346 0.3473 (1038/2989) 1 Intact Os_TE_378180 Os_TE_378180 Chr4 20639806 20640153 + NDNA2TNA_OS 346 0.3450 (1031/2988) 1 Intact Os_TE_378184 Os_TE_378163 Chr4 20636408 20636409 + RETRO2_LTR 12874 0.0070 (21/2992) 0 * Os_TE_378162 Os_TE_378162 Chr4 20636404 20636403 - RETRO2_LTR 12874 0.0070 (21/2991) 0 * Os_TE_378163 Os_TE_378157 Chr4 20635252 20628823 + COPIA2-LTR_OS 6433 0.1529 (452/2957) 1 Intact Os_TE_378153 Os_TE_378153 Chr4 20628823 20635252 - COPIA2-LTR_OS 6433 0.1652 (494/2990) 1 Intact Os_TE_378157 Os_TE_378120 Chr4 20619700 20619701 - RETRO2_LTR 12874 0.6248 (1657/2652) 0 * Os_TE_378119 Os_TE_378119 Chr4 20619696 20619695 + RETRO2_LTR 12874 0.5827 (1715/2943) 0 * Os_TE_378120 Os_TE_378079 Chr4 20608696 20608697 + MDR2 6967 0.0041 (12/2956) 0 * Os_TE_378078 Os_TE_378078 Chr4 20608688 20608687 - MDR2 6967 0.0047 (14/2965) 0 * Os_TE_378079 Os_TE_378077 Chr4 20608682 20608681 - OSMAR1 5265 0.0027 (8/2953) 0 * * Os_TE_378051 Chr4 20604153 20604152 + ORSgTEMT02000078 195 0.2500 (1/4) -1 * * Os_TE_378047 Chr4 20602654 20602653 + RETRO2A_LTR 12895 0.0926 (263/2840) 0 * * Os_TE_378046 Chr4 20602537 20602538 + RETRO2_LTR 12874 0.0030 (9/2983) 0 * * Os_TE_378019 Chr4 20598968 20598967 + ORSgTEMT01601591 242 0.0003 (1/2991) 0 * * Os_TE_378017 Chr4 20596836 20596837 + RIREX_LTR 8828 0.0003 (1/2959) 0 * Os_TE_378016 Os_TE_378016 Chr4 20596832 20596831 - RIREX_LTR 8828 0.0003 (1/2960) 0 * Os_TE_378017 Os_TE_378005 Chr4 20591898 20591899 + SC-8_LTR 4951 0.0003 (1/2989) 0 * Os_TE_378004 Os_TE_378004 Chr4 20591894 20591893 - SC-8_LTR 4951 0.0003 (1/2986) 0 * Os_TE_378005 Os_TE_377995 Chr4 20585499 20585498 + RETROSAT4_LTR 13504 0.0917 (274/2988) 0 * * Os_TE_377985 Chr4 20580705 20580706 - TYPEU1 380 0.0003 (1/2999) 0 * * Os_TE_377959 Chr4 20573217 20573218 - TYPEM 227 0.0805 (237/2944) 0 * Os_TE_377958 Os_TE_377958 Chr4 20573216 20573215 - ORSgTEMT02400179 221 0.0790 (232/2938) 0 * Os_TE_377959 Os_TE_377956 Chr4 20572520 20572521 - ORSgTEMT02000041 194 0.0057 (17/2959) 0 * * Os_TE_377948 Chr4 20571374 20571373 + STOWAWAY51_OS 246 0.0003 (1/2948) 0 * * Os_TE_377944 Chr4 20569302 20569301 - STOWAWAY51_OS 246 0.0033 (10/2990) 0 * Os_TE_377943 Os_TE_377943 Chr4 20569296 20569297 + STOWAWAY51_OS 246 0.0033 (10/2988) 0 * Os_TE_377944 Os_TE_377935 Chr4 20561343 20561342 + TELIA 141 0.0003 (1/2992) 0 * * Os_TE_377921 Chr4 20555956 20555955 + RETROSAT2LTR 12796 0.0009 (2/2299) 0 * * Os_TE_377913 Chr4 20555469 20555468 + ORSgTETNOOT00908 242 0.0014 (4/2949) 0 * * Os_TE_377906 Chr4 20546787 20546788 + RETROSAT4_LTR 13504 0.0033 (10/2998) 0 * Os_TE_377905 Os_TE_377905 Chr4 20546783 20546782 - SZ-35LTR 3853 0.0033 (10/2998) 0 * Os_TE_377906 Os_TE_377896 Chr4 20542126 20542127 - TEOS1 476 0.0007 (2/2911) 0 * * Os_TE_377865 Chr4 20531946 20531947 - MuDR3_OS 8604 0.1895 (563/2971) 0 * Os_TE_377864 Os_TE_377864 Chr4 20531937 20531936 - MuDR3_OS 8604 0.1935 (576/2976) 0 * Os_TE_377865 Os_TE_377825 Chr4 20516528 20516529 + ORSgTEMT01601591 242 0.0003 (1/2983) 0 * * Os_TE_377823 Chr4 20514970 20514971 - ORSiTERTOOT00367 5639 0.0007 (2/2992) 0 * Os_TE_377822 Os_TE_377822 Chr4 20514966 20514965 + ORSiTERTOOT00367 5639 0.0007 (2/2995) 0 * Os_TE_377823 Os_TE_377806 Chr4 20507461 20507462 + INDITTO 263 0.0010 (3/2998) 0 * Os_TE_377805 Os_TE_377805 Chr4 20507459 20507458 - INDITTO 263 0.0010 (3/2995) 0 * Os_TE_377806 Os_TE_377801 Chr4 20502560 20502561 - SC-8_LTR 4951 0.0003 (1/2998) 0 * Os_TE_377800 Os_TE_377800 Chr4 20502556 20502555 + SC-8_LTR 4951 0.0003 (1/2996) 0 * Os_TE_377801 Os_TE_377779 Chr4 20497513 20497514 + SPMLIKE 10989 0.0148 (44/2979) 0 * Os_TE_377778 Os_TE_377778 Chr4 20497511 20497510 - ORSgTETN00200001 10994 0.0161 (48/2973) 0 * Os_TE_377779 Os_TE_377762 Chr4 20492600 20492599 + ORSgTEMT00500864 109 0.0010 (3/2897) 0 * * Os_TE_377733 Chr4 20487857 20487856 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * * Os_TE_377726 Chr4 20482788 20482789 - SZ-40LTR 2465 0.5617 (1679/2989) 0 * Os_TE_377725 Os_TE_377725 Chr4 20482785 20482784 + GYPSY-A_LTR 8951 0.5577 (1663/2982) 0 * Os_TE_377726 Os_TE_377681 Chr4 20471662 20468626 + GYPSY-A_LTR 8951 0.1514 (453/2993) 1 Solo_LTR * Os_TE_377677 Chr4 20466021 20466022 - STOWAWAY44_OS 240 0.0003 (1/2975) 0 * * Os_TE_377672 Chr4 20464631 20464632 - OSMU5 4881 0.0003 (1/2920) 0 * Os_TE_377671 Os_TE_377671 Chr4 20464621 20464620 - OSMU5 4881 0.0003 (1/2920) 0 * Os_TE_377672 Os_TE_377665 Chr4 20462549 20462550 + ORSiTERTOOT00296 5553 0.0003 (1/2992) 0 * Os_TE_377664 Os_TE_377664 Chr4 20462545 20462544 - SC-3_LTR 5748 0.0003 (1/2994) 0 * Os_TE_377665 Os_TE_377645 Chr4 20451751 20451752 - OLO24 345 0.1876 (561/2990) 0 * Os_TE_377644 Os_TE_377644 Chr4 20451749 20451748 + OLO24 345 0.1884 (564/2993) 0 * Os_TE_377645 Os_TE_377639 Chr4 20446480 20446481 - MuDR2_OS 6770 0.0647 (193/2982) 0 * Os_TE_377638 Os_TE_377638 Chr4 20446471 20446470 + MuDR2_OS 6770 0.0565 (166/2936) 0 * Os_TE_377639 Os_TE_377628 Chr4 20439376 20439377 + OSTE33 1012 0.0017 (5/2988) 0 * * Os_TE_377622 Chr4 20437821 20437822 - RIREX_LTR 8828 0.0060 (18/2980) 0 * Os_TE_377621 Os_TE_377621 Chr4 20437817 20437816 + RIREX_LTR 8828 0.0060 (18/2984) 0 * Os_TE_377622 Os_TE_377619 Chr4 20436706 20436705 + ORSgTETNOOT00908 242 0.0677 (202/2984) 0 * * Os_TE_377612 Chr4 20431465 20431464 - RETRO2_LTR 12874 0.0210 (63/2995) 0 * * Os_TE_377610 Chr4 20430530 20430531 - RIRE2_LTR 11306 0.0010 (3/2949) 0 * Os_TE_377609 Os_TE_377609 Chr4 20430526 20430525 - ORSgTERT00201216 11284 0.0010 (3/2997) 0 * Os_TE_377610 Os_TE_377594 Chr4 20425160 20425159 - STOWAWAY51_OS 246 0.0007 (2/2992) 0 * Os_TE_377593 Os_TE_377593 Chr4 20425154 20425155 + STOWAWAY51_OS 246 0.0007 (2/2994) 0 * Os_TE_377594 Os_TE_377578 Chr4 20418609 20418610 - RIREX_LTR 8828 0.0004 (1/2814) 0 * Os_TE_377577 Os_TE_377577 Chr4 20418605 20418604 + RIREX_LTR 8828 0.0003 (1/2981) 0 * Os_TE_377578 Os_TE_377576 Chr4 20418568 20418306 - INDITTO 263 0.3378 (1010/2990) 1 Intact * Os_TE_377557 Chr4 20406009 20406010 - AMYLTP 383 0.0227 (68/2995) 0 * Os_TE_377556 Os_TE_377556 Chr4 20406001 20406000 + AMYLTP 383 0.0224 (67/2996) 0 * Os_TE_377557 Os_TE_377555 Chr4 20405023 20405024 + INDITTO 263 0.0007 (2/2993) 0 * Os_TE_377554 Os_TE_377554 Chr4 20405021 20405020 - INDITTO 263 0.0007 (2/2994) 0 * Os_TE_377555 Os_TE_377546 Chr4 20399652 20399651 + SC-8_LTR 4951 0.0003 (1/2998) 0 * * Os_TE_377538 Chr4 20396893 20396548 + NDNA2TNA_OS 346 0.5062 (1053/2080) 1 Intact Os_TE_377534 Os_TE_377534 Chr4 20396547 20396893 - NDNA2TNA_OS 346 0.3620 (1078/2978) 1 Intact Os_TE_377538 Os_TE_377523 Chr4 20390088 20390089 - OSTE24 683 0.0121 (36/2981) 0 * Os_TE_377522 Os_TE_377522 Chr4 20390077 20390076 - OSTE24 683 0.0117 (35/2979) 0 * Os_TE_377523 Os_TE_377520 Chr4 20387304 20387303 - TRUNCATOR 2918 0.0010 (3/2997) 0 * Os_TE_377519 Os_TE_377519 Chr4 20387303 20387304 + TRUNCATOR 2918 0.0010 (3/2997) 0 * Os_TE_377520 Os_TE_377513 Chr4 20381972 20381971 - OSTE24 683 0.0014 (4/2943) 0 * * Os_TE_377487 Chr4 20368519 20368518 + ORSgTETNOOT01834 251 0.2459 (726/2953) 0 * * Os_TE_377474 Chr4 20363133 20363134 + ORSgTETNOOT00908 242 0.0177 (53/2992) 0 * Os_TE_377473 Os_TE_377473 Chr4 20363125 20363124 + ORSgTETNOOT01219 231 0.0171 (51/2989) 0 * Os_TE_377474 Os_TE_377462 Chr4 20358246 20358247 + TWIFB1 3737 0.5525 (1652/2990) 0 * * Os_TE_377421 Chr4 20345160 20345161 - COPI2_LTR 4733 0.0003 (1/2990) 0 * Os_TE_377420 Os_TE_377420 Chr4 20345156 20345155 + COPI2_LTR 4733 0.0007 (2/2988) 0 * Os_TE_377421 Os_TE_377411 Chr4 20339787 20339788 + RETRO2_LTR 12874 0.0020 (6/2968) 0 * Os_TE_377410 Os_TE_377410 Chr4 20339783 20339782 - RETRO2_LTR 12874 0.0020 (6/2960) 0 * Os_TE_377411 Os_TE_377348 Chr4 20314804 20314803 - STOWAWAY51_OS 246 0.0130 (39/2991) 0 * Os_TE_377347 Os_TE_377347 Chr4 20314798 20314799 + STOWAWAY51_OS 246 0.0127 (38/2988) 0 * Os_TE_377348 Os_TE_377320 Chr4 20302248 20302247 + NDNA1TNA_OS 334 0.0010 (3/2986) 0 * * Os_TE_377312 Chr4 20301172 20301173 - STOWAWAY51_OS 246 0.0030 (9/2994) 0 * * Os_TE_377311 Chr4 20301133 20301132 + NDNA2TNA_OS 346 0.0120 (36/2995) 0 * Os_TE_377310 Os_TE_377310 Chr4 20301128 20301129 - NDNA2TNA_OS 346 0.0120 (36/2995) 0 * Os_TE_377311 Os_TE_377283 Chr4 20296844 20296845 + ORSgTETNOOT00908 242 0.0007 (2/2784) 0 * * Os_TE_377259 Chr4 20288194 20288195 - RIREX_LTR 8828 0.0004 (1/2708) 0 * * Os_TE_377247 Chr4 20286364 20286363 - SZ-35LTR 3853 0.0102 (23/2265) 0 * * Os_TE_377246 Chr4 20286226 20286227 + ORSiTERT00200145 12238 0.0399 (110/2756) 0 * * Os_TE_377240 Chr4 20285401 20285402 - COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_377239 Os_TE_377239 Chr4 20285397 20285396 + COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_377240 Os_TE_377182 Chr4 20256086 20256087 + TWIFB1 3737 0.0003 (1/2941) 0 * * Os_TE_377178 Chr4 20252921 20252920 - SC-3_LTR 5748 0.0003 (1/2976) 0 * * Os_TE_377153 Chr4 20232689 20232690 + SZ-67LTR 1540 0.0017 (5/2964) 0 * * Os_TE_377151 Chr4 20229495 20229496 - CLOUD-3 550 0.0013 (4/2991) 0 * * Os_TE_377098 Chr4 20217521 20217520 - COPI2_LTR 4733 0.0007 (2/2989) 0 * * Os_TE_377091 Chr4 20215123 20215122 + RETRO2_LTR 12874 0.0061 (18/2951) 0 * * Os_TE_377070 Chr4 20205008 20205009 + TWIFBIG 3567 0.0007 (2/2948) 0 * Os_TE_377069 Os_TE_377069 Chr4 20205001 20205000 - ORSiTETNOOT00216 3569 0.0010 (3/2952) 0 * Os_TE_377070 Os_TE_377066 Chr4 20202417 20202418 - ORSgTERT00200486 3946 0.0010 (3/2994) 0 * * Os_TE_377059 Chr4 20199590 20199591 + ORSgTEMT04300005 293 0.0117 (35/2995) 0 * Os_TE_377058 Os_TE_377058 Chr4 20199589 20199588 - HELIA 293 0.0120 (36/2988) 0 * Os_TE_377059 Os_TE_377040 Chr4 20194150 20194151 - INDITTO 263 0.0007 (2/2867) 0 * Os_TE_377039 Os_TE_377039 Chr4 20194148 20194147 + INDITTO 263 0.0004 (1/2847) 0 * Os_TE_377040 Os_TE_377037 Chr4 20192780 20192779 - STOWAWAY51_OS 246 0.0013 (4/2981) 0 * Os_TE_377036 Os_TE_377036 Chr4 20192774 20192775 + STOWAWAY51_OS 246 0.0013 (4/2984) 0 * Os_TE_377037 Os_TE_377031 Chr4 20191191 20191192 + CASTAWAY 364 0.5517 (1515/2746) 0 * Os_TE_377030 Os_TE_377030 Chr4 20191189 20191188 - CASTAWAY 364 0.6172 (1848/2994) 0 * Os_TE_377031 Os_TE_377028 Chr4 20189956 20189957 + COPIA2-LTR_OS 6433 0.0003 (1/2984) 0 * Os_TE_377027 Os_TE_377027 Chr4 20189952 20189951 - COPIA2-LTR_OS 6433 0.0003 (1/2986) 0 * Os_TE_377028 Os_TE_377001 Chr4 20173076 20173077 + SPMLIKE 10989 0.0003 (1/2954) 0 * * Os_TE_376999 Chr4 20172624 20172625 - MPING 430 0.0017 (5/2951) 0 * Os_TE_376998 Os_TE_376998 Chr4 20172622 20172621 + MPING 430 0.0017 (5/2953) 0 * Os_TE_376999 Os_TE_376956 Chr4 20156812 20156813 + ORSgTEMT00501935 151 0.0024 (7/2944) 0 * * Os_TE_376925 Chr4 20138435 20138434 - ORSiTETNOOT00134 607 0.0006 (1/1741) 0 * * Os_TE_376924 Chr4 20138230 20138231 + TWIFB1 3737 0.0008 (2/2453) 0 * * Os_TE_376917 Chr4 20131909 20131910 + TWIFB1 3737 0.0005 (1/2117) 0 * * Os_TE_376916 Chr4 20131170 20131171 + TWIFB1 3737 0.0166 (49/2952) 0 * * Os_TE_376898 Chr4 20123719 20123720 + ORSgTETNOOT02316 263 0.0602 (180/2990) 0 * Os_TE_376897 Os_TE_376897 Chr4 20123717 20123716 - INDITTO 263 0.0595 (178/2991) 0 * Os_TE_376898 Os_TE_376896 Chr4 20123350 20123349 + STOWAWAY51_OS 246 0.0040 (12/2994) 0 * Os_TE_376895 Os_TE_376895 Chr4 20123344 20123345 - STOWAWAY51_OS 246 0.0040 (12/2996) 0 * Os_TE_376896 Os_TE_376893 Chr4 20122878 20122877 + INDITTO 263 0.5184 (1550/2990) 0 * * Os_TE_376881 Chr4 20118237 20118236 - KRISPIE 956 0.1078 (150/1392) 0 * * Os_TE_376880 Chr4 20118236 20118237 + KRISPIE 956 0.1050 (146/1390) 0 * Os_TE_376879 Os_TE_376879 Chr4 20118231 20118230 - ORSiTEMT01300001 950 0.1070 (149/1392) 0 * Os_TE_376880 Os_TE_376857 Chr4 20112082 20112081 + SINE03_OS 360 0.0485 (145/2988) 0 * * Os_TE_376852 Chr4 20110922 20110923 + RIREX_LTR 8828 0.0003 (1/2973) 0 * Os_TE_376851 Os_TE_376851 Chr4 20110918 20110917 - RIREX_LTR 8828 0.0003 (1/2990) 0 * Os_TE_376852 Os_TE_376829 Chr4 20104677 20104678 + SC-4_LTR 5218 0.0013 (4/2966) 0 * * Os_TE_376826 Chr4 20104262 20104263 - RETROSAT2LTRA 3112 0.5233 (1563/2987) 0 * Os_TE_376825 Os_TE_376825 Chr4 20104258 20104257 + RETROSAT2LTRA 3112 0.5165 (1534/2970) 0 * Os_TE_376826 Os_TE_376813 Chr4 20093035 20093034 + RETRO2_LTR 12874 0.0472 (141/2985) 0 * * Os_TE_376810 Chr4 20088483 20088484 - ORSgTEMT00501219 127 0.0013 (4/2999) 0 * * Os_TE_376778 Chr4 20073686 20073685 - AMYLTP 383 0.0010 (3/2993) 0 * * Os_TE_376775 Chr4 20072338 20072337 - ORSgTETNOOT02565 240 0.0013 (4/2992) 0 * * Os_TE_376773 Chr4 20069924 20069925 - COPI2_LTR 4733 0.0003 (1/2976) 0 * Os_TE_376772 Os_TE_376772 Chr4 20069920 20069919 + COPI2_LTR 4733 0.0003 (1/2970) 0 * Os_TE_376773 Os_TE_376768 Chr4 20068906 20068907 - RIRE2_LTR 11306 0.0007 (2/2994) 0 * Os_TE_376767 Os_TE_376767 Chr4 20068902 20068901 + RIRE2_LTR 11306 0.0007 (2/2993) 0 * Os_TE_376768 Os_TE_376752 Chr4 20064687 20064688 - SINE6_OS 119 0.6131 (1838/2998) 0 * Os_TE_376751 Os_TE_376751 Chr4 20064672 20064671 + SINE1OS 127 0.6122 (1833/2994) 0 * Os_TE_376752 Os_TE_376734 Chr4 20058459 20054534 - RETROSAT5_LTR 13878 0.3726 (1111/2982) 0.86 Solo_LTR * Os_TE_376727 Chr4 20045625 20045626 + ORSgTETNOOT01998 254 0.0003 (1/2977) 0 * Os_TE_376726 Os_TE_376726 Chr4 20045623 20045622 - ORSgTETNOOT00754 253 0.0003 (1/2977) 0 * Os_TE_376727 Os_TE_376704 Chr4 20041608 20041609 - COPIA2-LTR_OS 6433 0.0007 (2/2998) 0 * Os_TE_376703 Os_TE_376703 Chr4 20041604 20041603 + COPIA2-LTR_OS 6433 0.0007 (2/2998) 0 * Os_TE_376704 Os_TE_376678 Chr4 20033149 20032786 + CASTAWAY 364 0.7428 (979/1318) 1 Intact Os_TE_376676 Os_TE_376676 Chr4 20032786 20033145 + ORSgTEMT00600124 361 0.3205 (952/2970) 1 Intact Os_TE_376678 Os_TE_376672 Chr4 20032424 20032423 + OSMAR1 5265 0.0109 (32/2941) 0 * Os_TE_376671 Os_TE_376671 Chr4 20032421 20032422 - OSMAR1 5265 0.0116 (34/2938) 0 * Os_TE_376672 Os_TE_376665 Chr4 20029983 20029984 + ORSiTERTOOT00226 792 0.0003 (1/2977) 0 * Os_TE_376664 Os_TE_376664 Chr4 20029979 20029978 - SZ-22_LTR 4403 0.0003 (1/2971) 0 * Os_TE_376665 Os_TE_376652 Chr4 20027842 20027843 - ORSgTEMT00700002 381 0.0003 (1/2993) 0 * * Os_TE_376645 Chr4 20020550 20020549 - ORSgTEMT00901567 235 0.0017 (5/2977) 0 * * Os_TE_376643 Chr4 20019969 20019968 + ORSgTEMT01602181 239 0.0007 (2/2987) 0 * Os_TE_376642 Os_TE_376642 Chr4 20019966 20019967 - ORSgTEMT01601432 239 0.0007 (2/2990) 0 * Os_TE_376643 Os_TE_376635 Chr4 20018019 20018018 - SC-3_LTR 5748 0.0020 (6/2987) 0 * * Os_TE_376602 Chr4 19998982 19998983 - MPING 430 0.0003 (1/2992) 0 * Os_TE_376601 Os_TE_376601 Chr4 19998980 19998979 + MPING 430 0.0003 (1/2994) 0 * Os_TE_376602 Os_TE_376600 Chr4 19998909 19998910 + RIREX_LTR 8828 0.0003 (1/2989) 0 * Os_TE_376599 Os_TE_376599 Chr4 19998905 19998904 - RIREX_LTR 8828 0.0003 (1/2990) 0 * Os_TE_376600 Os_TE_376579 Chr4 19996493 19996494 + ORSgTEMT00901798 232 0.0003 (1/2996) 0 * * Os_TE_376578 Chr4 19996053 19996054 - MPING 430 0.0013 (4/2992) 0 * Os_TE_376577 Os_TE_376577 Chr4 19996051 19996050 + MPING 430 0.0013 (4/2994) 0 * Os_TE_376578 Os_TE_376575 Chr4 19992440 19992441 - INDITTO 263 0.0007 (2/2995) 0 * Os_TE_376574 Os_TE_376574 Chr4 19992438 19992437 - INDITTO 263 0.0013 (4/2998) 0 * Os_TE_376575 Os_TE_376570 Chr4 19991759 19991758 + ORSgTEMT01601591 242 0.0003 (1/2999) 0 * Os_TE_376569 Os_TE_376569 Chr4 19991756 19991757 + ORSgTEMT01601591 242 0.0003 (1/2998) 0 * Os_TE_376570 Os_TE_376541 Chr4 19988153 19988154 - MPING 430 0.0013 (4/2993) 0 * Os_TE_376540 Os_TE_376540 Chr4 19988151 19988150 + MPING 430 0.0013 (4/2997) 0 * Os_TE_376541 Os_TE_376532 Chr4 19983181 19983182 + RETRO2A_LTR 12895 0.0007 (2/2965) 0 * Os_TE_376531 Os_TE_376531 Chr4 19983177 19983176 - RETRO1_LTR 8314 0.0007 (2/2964) 0 * Os_TE_376532 Os_TE_376521 Chr4 19980224 19980223 - STOWAWAY51_OS 246 0.0003 (1/2996) 0 * Os_TE_376520 Os_TE_376520 Chr4 19980218 19980219 + STOWAWAY51_OS 246 0.0003 (1/2998) 0 * Os_TE_376521 Os_TE_376506 Chr4 19969353 19969354 - RETRO2_LTR 12874 0.4376 (1293/2955) 0 * Os_TE_376505 Os_TE_376505 Chr4 19969349 19969348 + RETRO2_LTR 12874 0.4315 (1256/2911) 0 * Os_TE_376506 Os_TE_376494 Chr4 19967824 19967825 - MDR2 6967 0.4307 (1277/2965) 0 * Os_TE_376493 Os_TE_376493 Chr4 19967816 19967815 + MDR2 6967 0.4358 (1301/2985) 0 * Os_TE_376494 Os_TE_376469 Chr4 19962280 19962279 - STOWAWAY51_OS 246 0.0003 (1/2990) 0 * * Os_TE_376448 Chr4 19954437 19954438 + SZ-14LTR 1193 0.0004 (1/2797) 0 * Os_TE_376447 Os_TE_376447 Chr4 19954433 19954432 - SZ-9LTR 965 0.0004 (1/2768) 0 * Os_TE_376448 Os_TE_376444 Chr4 19952249 19952250 + ORSgTEMT01601591 242 0.0012 (3/2587) 0 * * Os_TE_376443 Chr4 19952226 19951984 + ORSgTEMT01601591 242 0.3721 (1105/2970) -1 Intact Os_TE_376441 Os_TE_376441 Chr4 19951981 19952226 + STOWAWAY51_OS 246 0.3772 (1124/2980) 1 Intact Os_TE_376443 Os_TE_376440 Chr4 19951595 19951596 + FOCUS 257 0.0020 (6/2991) 0 * Os_TE_376439 Os_TE_376439 Chr4 19951593 19951592 - FOCUS 257 0.0023 (7/2994) 0 * Os_TE_376440 Os_TE_376433 Chr4 19950827 19950826 + RETRO2_LTR 12874 0.0600 (179/2984) 0 * * Os_TE_376428 Chr4 19949514 19949515 - Cassandra_OS-LTR 764 0.0003 (1/2950) 0 * Os_TE_376427 Os_TE_376427 Chr4 19949510 19949509 + Cassandra_OS-LTR 764 0.0003 (1/2948) 0 * Os_TE_376428 Os_TE_376420 Chr4 19947968 19947969 + COPIA2-LTR_OS 6433 0.0023 (7/2995) 0 * Os_TE_376419 Os_TE_376419 Chr4 19947964 19947963 - COPIA2-LTR_OS 6433 0.0023 (7/2997) 0 * Os_TE_376420 Os_TE_376412 Chr4 19945640 19945639 + SPMLIKE 10989 0.0003 (1/2992) 0 * * Os_TE_376406 Chr4 19944185 19944186 + CACTA-M 1129 0.0003 (1/2997) 0 * * Os_TE_376404 Chr4 19943394 19943395 + ORSgTETNOOT00221 261 0.0626 (187/2988) 0 * * Os_TE_376381 Chr4 19931932 19931933 + SZ-40LTR 2465 0.0679 (203/2990) 0 * Os_TE_376380 Os_TE_376380 Chr4 19931928 19931927 - SZ-40LTR 2465 0.0685 (205/2994) 0 * Os_TE_376381 Os_TE_376351 Chr4 19920692 19920693 - OsSN3 183 0.0003 (1/2976) 0 * * Os_TE_376332 Chr4 19917065 19917066 - OSTE33 1012 0.0082 (22/2694) 0 * Os_TE_376331 Os_TE_376331 Chr4 19917056 19917055 - OSTE33 1012 0.0276 (60/2174) 0 * Os_TE_376332 Os_TE_376319 Chr4 19910987 19910988 - RETROSAT4_LTR 13504 0.1305 (385/2950) 0 * Os_TE_376318 Os_TE_376318 Chr4 19910983 19910982 + RETROSAT4_LTR 13504 0.1207 (352/2917) 0 * Os_TE_376319 Os_TE_376315 Chr4 19909134 19909135 + HARB-1_OS 5166 0.0003 (1/2953) 0 * Os_TE_376314 Os_TE_376314 Chr4 19909132 19909131 - HARB-1_OS 5166 0.0003 (1/2949) 0 * Os_TE_376315 Os_TE_376312 Chr4 19908903 19908904 + TYPEU4 402 0.0015 (4/2609) 0 * Os_TE_376311 Os_TE_376311 Chr4 19908895 19908894 - TYPEU1 380 0.0015 (4/2610) 0 * Os_TE_376312 Os_TE_376310 Chr4 19908731 19908732 + SZ-67LTR 1540 0.0003 (1/2964) 0 * * Os_TE_376307 Chr4 19908303 19908302 + STOWAWAY44_OS 240 0.0003 (1/2936) 0 * Os_TE_376306 Os_TE_376306 Chr4 19908300 19908301 - STOWAWAY44_OS 240 0.0003 (1/2950) 0 * Os_TE_376307 Os_TE_376293 Chr4 19902298 19902299 + ORSiTERTOOT00333 4719 0.0011 (2/1744) 0 * * Os_TE_376291 Chr4 19900644 19900645 - SZ-55_LTR 10318 0.0003 (1/2984) 0 * Os_TE_376290 Os_TE_376290 Chr4 19900640 19900639 + SZ-55_LTR 10318 0.0003 (1/2985) 0 * Os_TE_376291 Os_TE_376286 Chr4 19899670 19899671 + ORSgTETNOOT00908 242 0.4431 (1309/2954) 0 * * Os_TE_376284 Chr4 19898208 19898209 - TRUNCATOR2_LTR 2904 0.0004 (1/2726) 0 * * Os_TE_376280 Chr4 19896136 19896137 + OSTONOR1_LTR 6440 0.0003 (1/2961) 0 * Os_TE_376279 Os_TE_376279 Chr4 19896132 19896131 - OSTONOR1_LTR 6440 0.0003 (1/2889) 0 * Os_TE_376280 Os_TE_376275 Chr4 19893337 19893187 - ORSgTEMT00500787 153 0.3939 (1154/2930) 1 Intact Os_TE_376274 Os_TE_376274 Chr4 19893185 19893334 - ORSgTEMT00501204 149 0.4642 (1161/2501) 1 Intact Os_TE_376275 Os_TE_376269 Chr4 19890305 19890304 - ORSgTEMT00500095 150 0.0010 (3/2997) 0 * * Os_TE_376265 Chr4 19887424 19887423 + STOWAWAY51_OS 246 0.0003 (1/2989) 0 * Os_TE_376264 Os_TE_376264 Chr4 19887418 19887419 - STOWAWAY51_OS 246 0.0003 (1/2986) 0 * Os_TE_376265 Os_TE_376263 Chr4 19887014 19887013 - ORSgTEMT00502214 125 0.0023 (7/2990) 0 * * Os_TE_376261 Chr4 19885347 19885348 + ORSgTEMT00600376 329 0.0017 (5/2934) 0 * Os_TE_376260 Os_TE_376260 Chr4 19885346 19885345 + ORSgTEMT00600448 360 0.0017 (5/2934) 0 * Os_TE_376261 Os_TE_376247 Chr4 19878429 19878430 - ORSgTEMT01701254 154 0.0017 (5/2981) 0 * * Os_TE_376227 Chr4 19870995 19870996 - INDITTO 263 0.0337 (74/2195) 0 * * Os_TE_376224 Chr4 19870827 19870828 + ORSgTETNOOT01583 259 0.0013 (4/2977) 0 * * Os_TE_376222 Chr4 19870297 19870298 + COPIA2-LTR_OS 6433 0.0133 (39/2925) 0 * * Os_TE_376211 Chr4 19862866 19862867 + COPIA2-LTR_OS 6433 0.0010 (3/2969) 0 * Os_TE_376210 Os_TE_376210 Chr4 19862862 19862861 - COPIA2-LTR_OS 6433 0.0010 (3/2977) 0 * Os_TE_376211 Os_TE_376209 Chr4 19862697 19862698 - ORSgTEMT00501447 126 0.0020 (6/2973) 0 * Os_TE_376208 Os_TE_376208 Chr4 19862695 19862694 + ORSgTETNOOT01930 140 0.0020 (6/2968) 0 * Os_TE_376209 Os_TE_376200 Chr4 19860982 19860981 + ORSgTEMT01601591 242 0.0003 (1/2936) 0 * Os_TE_376199 Os_TE_376199 Chr4 19860979 19860980 + ORSgTEMT01601591 242 0.0003 (1/2926) 0 * Os_TE_376200 Os_TE_376193 Chr4 19859147 19859146 + TWIF 586 0.0018 (5/2856) 0 * * Os_TE_376191 Chr4 19859083 19859082 - STOWAWAY44_OS 240 0.1304 (350/2685) 0 * Os_TE_376190 Os_TE_376190 Chr4 19859080 19859081 + STOWAWAY44_OS 240 0.1196 (324/2710) 0 * Os_TE_376191 Os_TE_376181 Chr4 19853930 19853931 - STOWAWAY12_OS 312 0.0020 (6/2972) 0 * * Os_TE_376160 Chr4 19848328 19848329 - SZ-62LTR 3649 0.0003 (1/2939) 0 * Os_TE_376159 Os_TE_376159 Chr4 19848325 19848324 + SZ-62LTR 3649 0.0003 (1/2947) 0 * Os_TE_376160 Os_TE_376157 Chr4 19847666 19847667 - ORSgTEMT00600085 364 0.0020 (6/2977) 0 * Os_TE_376156 Os_TE_376156 Chr4 19847665 19847664 + ORSgTEMT00600502 360 0.0020 (6/2980) 0 * Os_TE_376157 Os_TE_376155 Chr4 19847510 19847509 + ORSgTETNOOT01275 140 0.0020 (6/2958) 0 * * Os_TE_376126 Chr4 19837257 19837258 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_376125 Os_TE_376125 Chr4 19837253 19837252 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_376126 Os_TE_376113 Chr4 19830074 19829851 - STOWAWAY44_OS 240 0.8189 (2392/2921) 1 Intact Os_TE_376112 Os_TE_376112 Chr4 19829851 19830074 - STOWAWAY44_OS 240 0.7991 (2343/2932) 1 Intact Os_TE_376113 Os_TE_376111 Chr4 19829317 19828964 - F524 291 0.8442 (1398/1656) 1 Intact * Os_TE_376091 Chr4 19818214 19818215 - STOWAWAY46_OS 154 0.0023 (7/2995) 0 * * Os_TE_376036 Chr4 19801289 19801288 - ORSiTETNOOT00130 2164 0.0038 (11/2930) 0 * * Os_TE_376029 Chr4 19797269 19797268 + ORSgTEMT01602051 240 0.0024 (7/2924) 0 * Os_TE_376028 Os_TE_376028 Chr4 19797266 19797267 - ORSgTEMT01601564 233 0.0024 (7/2923) 0 * Os_TE_376029 Os_TE_375974 Chr4 19775582 19775583 + ORSiTERTOOT00226 792 0.0003 (1/2980) 0 * * Os_TE_375972 Chr4 19771443 19771444 - ORSgTETNOOT02417 265 0.0007 (2/2991) 0 * Os_TE_375971 Os_TE_375971 Chr4 19771441 19771440 - INDITTO 263 0.0010 (3/2992) 0 * Os_TE_375972 Os_TE_375969 Chr4 19768788 19768789 - ORSiTERTOOT00402 2660 0.0003 (1/2913) 0 * * Os_TE_375967 Chr4 19765875 19761956 - RETROSAT4_LTR 13504 0.3502 (1020/2913) 1 Solo_LTR * Os_TE_375936 Chr4 19740411 19740410 + ORSiTERTOOT00333 4719 0.0003 (1/2983) 0 * * Os_TE_375919 Chr4 19734928 19722396 + RETRO2_LTR 12874 0.3696 (1097/2968) 1 Intact Os_TE_375911 Os_TE_375911 Chr4 19722396 19734928 - RETRO2_LTR 12874 0.3722 (1108/2977) 1 Intact Os_TE_375919 Os_TE_375906 Chr4 19720686 19720687 + RIREX_LTR 8828 0.0003 (1/2988) 0 * Os_TE_375905 Os_TE_375905 Chr4 19720682 19720681 - RIREX_LTR 8828 0.0003 (1/2987) 0 * Os_TE_375906 Os_TE_375904 Chr4 19720475 19720476 + COPI2_LTR 4733 0.0057 (17/2994) 0 * Os_TE_375903 Os_TE_375903 Chr4 19720471 19720470 - COPI2_LTR 4733 0.0057 (17/2994) 0 * Os_TE_375904 Os_TE_375902 Chr4 19720229 19720230 - RIREX_LTR 8828 0.0003 (1/2960) 0 * Os_TE_375901 Os_TE_375901 Chr4 19720225 19720224 + RIREX_LTR 8828 0.0003 (1/2972) 0 * Os_TE_375902 Os_TE_375896 Chr4 19717307 19717306 + ORSgTETNOOT00908 242 0.0007 (2/2994) 0 * * Os_TE_375876 Chr4 19711283 19711284 + COPI2_LTR 4733 0.0003 (1/2892) 0 * * Os_TE_375872 Chr4 19705950 19705949 + ORSgTERT00200981 4035 0.0010 (3/2966) 0 * * Os_TE_375863 Chr4 19702251 19702250 + ORSiTERTOOT00226 792 0.0003 (1/2962) 0 * * Os_TE_375861 Chr4 19701911 19701912 + AMYLTP 383 0.0007 (2/2974) 0 * Os_TE_375860 Os_TE_375860 Chr4 19701903 19701902 - AMYLTP 383 0.0007 (2/2973) 0 * Os_TE_375861 Os_TE_375857 Chr4 19696658 19696659 + SC-8_LTR 4951 0.0003 (1/2977) 0 * Os_TE_375856 Os_TE_375856 Chr4 19696654 19696653 - SC-8_LTR 4951 0.0003 (1/2977) 0 * Os_TE_375857 Os_TE_375847 Chr4 19690533 19690534 + INDITTO 263 0.0003 (1/2994) 0 * Os_TE_375846 Os_TE_375846 Chr4 19690531 19690530 - INDITTO 263 0.0003 (1/2991) 0 * Os_TE_375847 Os_TE_375774 Chr4 19663725 19663724 + AMYLTP 383 0.0003 (1/2916) 0 * * Os_TE_375744 Chr4 19656685 19656686 + TELIA 141 0.0008 (2/2654) 0 * Os_TE_375743 Os_TE_375743 Chr4 19656677 19656676 - TELIA 141 0.0011 (3/2653) 0 * Os_TE_375744 Os_TE_375735 Chr4 19649915 19649916 + RETRO1_LTR 8314 0.0003 (1/2938) 0 * * Os_TE_375727 Chr4 19647776 19647777 - INDITTO 263 0.0071 (21/2969) 0 * Os_TE_375726 Os_TE_375726 Chr4 19647774 19647773 + INDITTO 263 0.0061 (16/2633) 0 * Os_TE_375727 Os_TE_375705 Chr4 19644362 19644363 + RIREX_LTR 8828 0.0062 (17/2761) 0 * * Os_TE_375689 Chr4 19638436 19638435 + TREP215 239 0.0007 (2/2933) 0 * * Os_TE_375657 Chr4 19633509 19633510 - KIDDOC 275 0.0007 (2/2910) 0 * Os_TE_375656 Os_TE_375656 Chr4 19633505 19633504 + KIDDOC 275 0.0007 (2/2920) 0 * Os_TE_375657 Os_TE_375621 Chr4 19622644 19622645 + COPI2_LTR 4733 0.0003 (1/2897) 0 * Os_TE_375620 Os_TE_375620 Chr4 19622640 19622639 - COPI2_LTR 4733 0.0003 (1/2887) 0 * Os_TE_375621 Os_TE_375584 Chr4 19599171 19599170 + ORSgTEMT01701591 154 0.0007 (2/2984) 0 * * Os_TE_375550 Chr4 19585154 19585155 - SC-3_LTR 5748 0.0007 (2/2920) 0 * Os_TE_375549 Os_TE_375549 Chr4 19585150 19585149 + ORSiTERTOOT00296 5553 0.0003 (1/2918) 0 * Os_TE_375550 Os_TE_375521 Chr4 19571223 19571224 + MPING 430 0.0003 (1/2996) 0 * Os_TE_375520 Os_TE_375520 Chr4 19571221 19571220 - MPING 430 0.0003 (1/2990) 0 * Os_TE_375521 Os_TE_375518 Chr4 19566485 19566484 - STOWAWAY51_OS 246 0.0007 (2/2998) 0 * Os_TE_375517 Os_TE_375517 Chr4 19566482 19566483 - STOWAWAY51_OS 246 0.0007 (2/2999) 0 * Os_TE_375518 Os_TE_375515 Chr4 19566082 19566081 - SZ-COM 1308 0.0003 (1/2999) 0 * * Os_TE_375463 Chr4 19549684 19549683 - ORSgTEMT01601432 239 0.0218 (59/2704) 0 * Os_TE_375462 Os_TE_375462 Chr4 19549681 19549682 - ORSgTEMT01601696 238 0.0146 (39/2680) 0 * Os_TE_375463 Os_TE_375440 Chr4 19540733 19540734 + TRUNCATOR 2918 0.0756 (226/2988) 0 * Os_TE_375439 Os_TE_375439 Chr4 19540727 19540726 - ORSiTERT00200154 9386 0.0769 (230/2990) 0 * Os_TE_375440 Os_TE_375427 Chr4 19535947 19535948 - OLO24 345 0.0003 (1/2983) 0 * * Os_TE_375347 Chr4 19515427 19515428 + NDNA1TNA_OS 334 0.0925 (272/2940) 0 * Os_TE_375346 Os_TE_375346 Chr4 19515425 19515424 - NDNA1TNA_OS 334 0.0918 (269/2931) 0 * Os_TE_375347 Os_TE_375286 Chr4 19499831 19499832 - SC-3_LTR 5748 0.0003 (1/2986) 0 * Os_TE_375285 Os_TE_375285 Chr4 19499827 19499826 + ORSiTERTOOT00296 5553 0.0003 (1/2985) 0 * Os_TE_375286 Os_TE_375279 Chr4 19496630 19496631 + COPIA2-LTR_OS 6433 0.0003 (1/2898) 0 * Os_TE_375278 Os_TE_375278 Chr4 19496626 19496625 - COPIA2-LTR_OS 6433 0.0003 (1/2901) 0 * Os_TE_375279 Os_TE_375272 Chr4 19495664 19495665 + COPI2_LTR 4733 0.0003 (1/2979) 0 * Os_TE_375271 Os_TE_375271 Chr4 19495660 19495659 - COPI2_LTR 4733 0.0003 (1/2983) 0 * Os_TE_375272 Os_TE_375260 Chr4 19492053 19492052 - TRUNCATOR 2918 0.0148 (44/2965) 0 * * Os_TE_375251 Chr4 19488222 19488223 - RIREX_LTR 8828 0.0003 (1/2929) 0 * Os_TE_375250 Os_TE_375250 Chr4 19488218 19488217 + RIREX_LTR 8828 0.0003 (1/2922) 0 * Os_TE_375251 Os_TE_375248 Chr4 19487596 19487597 + RETRO2_LTR 12874 0.5915 (1771/2994) 0.08 * Os_TE_375247 Os_TE_375247 Chr4 19487592 19487591 - RETRO2_LTR 12874 0.5928 (1769/2984) 0 * Os_TE_375248 Os_TE_375203 Chr4 19472443 19472444 + MPING 430 0.0003 (1/2952) 0 * * Os_TE_375202 Chr4 19472441 19472440 - INDITTO 263 0.0010 (3/2950) 0 * * Os_TE_375200 Chr4 19472198 19472197 - MPING 430 0.0003 (1/2949) 0 * * Os_TE_375178 Chr4 19463785 19463786 + CACTA-M 1129 0.0135 (39/2899) 0 * * Os_TE_375162 Chr4 19460416 19459801 - DS-RICE2N 613 0.3842 (1140/2967) 1 Intact Os_TE_375160 Os_TE_375160 Chr4 19459801 19460416 + DS-RICE2N 613 0.3884 (1155/2974) 1 Intact Os_TE_375162 Os_TE_375147 Chr4 19458526 19458525 - ORSgTETNOOT02565 240 0.0078 (23/2965) 0 * * Os_TE_375114 Chr4 19440098 19440099 - SZ-67LTR 1540 0.0024 (7/2956) 0 * * Os_TE_375102 Chr4 19435833 19435513 + ORSgTEMT00100531 325 0.4005 (1109/2769) 1 Intact Os_TE_375101 Os_TE_375101 Chr4 19435498 19435831 + NDNA1TNA_OS 334 0.3905 (1157/2963) 1 Intact Os_TE_375102 Os_TE_375082 Chr4 19426569 19426568 + ORSgTEMT00600502 360 0.5988 (1766/2949) 0 * * Os_TE_375081 Chr4 19425518 19425519 - ORSgTEMT00900099 250 0.8115 (1774/2186) 0 * * Os_TE_375072 Chr4 19424742 19424743 - INDITTO 263 0.0185 (55/2979) 0 * Os_TE_375071 Os_TE_375071 Chr4 19424740 19424739 + INDITTO 263 0.0188 (56/2984) 0 * Os_TE_375072 Os_TE_374681 Chr4 19394508 19394509 - SINE9_OS 293 0.0020 (6/2999) 0 * Os_TE_374680 Os_TE_374680 Chr4 19394495 19394494 + SINE9_OS 293 0.0023 (7/3000) 0 * Os_TE_374681 Os_TE_374502 Chr4 19373258 19373035 + ORSgTEMT01600891 233 0.7154 (1400/1957) 1 Intact * Os_TE_374459 Chr4 19358916 19357498 + OSTE33 1012 0.4315 (1289/2987) 1 Intact Os_TE_374458 Os_TE_374458 Chr4 19357498 19358915 + OSTE33 1012 0.4174 (1221/2925) 1 Intact Os_TE_374459 Os_TE_374457 Chr4 19357084 19357083 - STOWAWAY51_OS 246 0.0003 (1/2971) 0 * Os_TE_374456 Os_TE_374456 Chr4 19357078 19357079 + STOWAWAY51_OS 246 0.0003 (1/2961) 0 * Os_TE_374457 Os_TE_374441 Chr4 19353416 19353417 - RETRO1_LTR 8314 0.0007 (2/2979) 0 * Os_TE_374440 Os_TE_374440 Chr4 19353412 19353411 + RETRO2A_LTR 12895 0.0007 (2/2983) 0 * Os_TE_374441 Os_TE_374434 Chr4 19351548 19351686 + OSTE18 129 0.3968 (1172/2954) 1 Intact * Os_TE_374427 Chr4 19349799 19349800 + FOCUS 257 0.0003 (1/2983) 0 * Os_TE_374426 Os_TE_374426 Chr4 19349797 19349796 - FOCUS 257 0.0003 (1/2980) 0 * Os_TE_374427 Os_TE_374396 Chr4 19344890 19344891 + MPING 430 0.0013 (4/2989) 0 * Os_TE_374395 Os_TE_374395 Chr4 19344888 19344887 - MPING 430 0.0013 (4/2986) 0 * Os_TE_374396 Os_TE_374307 Chr4 19304327 19304326 + AMYLTP 383 0.5588 (1607/2876) 0 * * Os_TE_374302 Chr4 19299737 19299738 - MuDR3_OS 8604 0.0017 (2/1182) 0 * Os_TE_374301 Os_TE_374301 Chr4 19299729 19299728 - MuDR3_OS 8604 0.0017 (2/1181) 0 * Os_TE_374302 Os_TE_374283 Chr4 19293052 19293051 + INDITTO 263 0.0003 (1/2988) 0 * * Os_TE_374274 Chr4 19287155 19287154 - COPIA2-LTR_OS 6433 0.0003 (1/2953) 0 * * Os_TE_374232 Chr4 19269162 19269161 - ORSgTETNOOT00754 253 0.0028 (8/2901) 0 * * Os_TE_374227 Chr4 19265322 19265323 - ORSgTEMT02400179 221 0.0003 (1/2981) 0 * Os_TE_374226 Os_TE_374226 Chr4 19265321 19265320 - TYPEM 227 0.0003 (1/2972) 0 * Os_TE_374227 Os_TE_374168 Chr4 19244089 19244090 - SC-8_LTR 4951 0.0251 (75/2991) 0 * Os_TE_374167 Os_TE_374167 Chr4 19244085 19244084 + ORSiTERTOOT00381 4988 0.0251 (75/2992) 0 * Os_TE_374168 Os_TE_374139 Chr4 19222671 19222672 + ORSiTERTOOT00296 5553 0.0003 (1/2985) 0 * Os_TE_374138 Os_TE_374138 Chr4 19222667 19222666 - SC-3_LTR 5748 0.0003 (1/2985) 0 * Os_TE_374139 Os_TE_374131 Chr4 19216089 19216090 + MDR2 6967 0.5859 (1740/2970) 0 * Os_TE_374130 Os_TE_374130 Chr4 19216080 19216079 - MDR2 6967 0.5858 (1738/2967) 0 * Os_TE_374131 Os_TE_374104 Chr4 19207559 19207560 + ORSgTEMT00300064 397 0.0063 (19/2996) 0 * * Os_TE_374093 Chr4 19203545 19203546 - RETRO2_LTR 12874 0.1000 (274/2741) 0 * * Os_TE_374064 Chr4 19198877 19198876 + COPIA2-LTR_OS 6433 0.0003 (1/2975) 0 * * Os_TE_374046 Chr4 19193603 19193604 - NDNA1TNA_OS 334 0.0007 (2/2990) 0 * Os_TE_374045 Os_TE_374045 Chr4 19193601 19193600 + NDNA1TNA_OS 334 0.0007 (2/2993) 0 * Os_TE_374046 Os_TE_374033 Chr4 19186617 19186618 - SC-3_LTR 5748 0.0013 (4/2997) 0 * Os_TE_374032 Os_TE_374032 Chr4 19186613 19186612 + ORSiTERTOOT00296 5553 0.0013 (4/2998) 0 * Os_TE_374033 Os_TE_374031 Chr4 19186281 19186280 - TREP215 239 0.0024 (7/2976) 0 * Os_TE_374030 Os_TE_374030 Chr4 19186278 19186279 + ORSgTEMT01602051 240 0.0020 (6/2983) 0 * Os_TE_374031 Os_TE_374020 Chr4 19182707 19182708 - INDITTO 263 0.0003 (1/2997) 0 * * Os_TE_373991 Chr4 19162690 19162691 - MPING 430 0.0011 (2/1755) 0 * Os_TE_373990 Os_TE_373990 Chr4 19162688 19162687 + MPING 430 0.0011 (2/1751) 0 * Os_TE_373991 Os_TE_373979 Chr4 19151943 19151944 + CACTA-E 1207 0.0020 (4/2004) 0 * * Os_TE_373976 Chr4 19148283 19148282 - TRUNCATOR2_LTR 2904 0.0012 (2/1738) 0 * * Os_TE_373973 Chr4 19144760 19144761 + INDITTO 263 0.0054 (16/2970) 0 * Os_TE_373972 Os_TE_373972 Chr4 19144758 19144757 - INDITTO 263 0.0050 (15/2981) 0 * Os_TE_373973 Os_TE_373925 Chr4 19097623 19097624 + RIRE2_LTR 11306 0.0003 (1/2976) 0 * * Os_TE_373910 Chr4 19093447 19093448 + COPIA2-LTR_OS 6433 0.0003 (1/2894) 0 * Os_TE_373909 Os_TE_373909 Chr4 19093443 19093442 - COPIA2-LTR_OS 6433 0.0007 (2/2874) 0 * Os_TE_373910 Os_TE_373907 Chr4 19091740 19088657 + ORSiCMCM00100019 2717 0.6232 (1763/2829) 1 Intact * Os_TE_373878 Chr4 19080897 19080898 - COPIA2-LTR_OS 6433 0.0007 (2/2997) 0 * Os_TE_373877 Os_TE_373877 Chr4 19080893 19080892 + COPIA2-LTR_OS 6433 0.0007 (2/2996) 0 * Os_TE_373878 Os_TE_373858 Chr4 19060252 19060253 - RETRO2_LTR 12874 0.0312 (93/2978) 0 * Os_TE_373857 Os_TE_373857 Chr4 19060248 19060247 + RETRO2_LTR 12874 0.0309 (92/2976) 0 * Os_TE_373858 Os_TE_373795 Chr4 19021489 19021060 + MPING 430 0.0135 (40/2956) 1 Intact Os_TE_373794 Os_TE_373794 Chr4 19021060 19021489 - MPING 430 0.0135 (40/2956) 1 Intact Os_TE_373795 Os_TE_373793 Chr4 19020928 19020927 - STOWAWAY51_OS 246 0.0017 (5/2969) 0 * Os_TE_373792 Os_TE_373792 Chr4 19020925 19020926 - STOWAWAY51_OS 246 0.0013 (4/2963) 0 * Os_TE_373793 Os_TE_373756 Chr4 19008287 19008288 - ORSgTETN00200001 10994 0.0003 (1/2918) 0 * Os_TE_373755 Os_TE_373755 Chr4 19008285 19008284 + SPMLIKE 10989 0.0003 (1/2916) 0 * Os_TE_373756 Os_TE_373742 Chr4 19002557 19002558 - ORSgTETNOOT00823 234 0.0020 (6/2989) 0 * Os_TE_373741 Os_TE_373741 Chr4 19002550 19002549 + ORSgTETNOOT00908 242 0.0023 (7/2990) 0 * Os_TE_373742 Os_TE_373740 Chr4 19002444 19002445 - AMYLTP 383 0.0023 (7/2985) 0 * Os_TE_373739 Os_TE_373739 Chr4 19002436 19002435 + AMYLTP 383 0.0023 (7/2986) 0 * Os_TE_373740 Os_TE_373738 Chr4 19000730 19000731 - COPIA2-LTR_OS 6433 0.0023 (7/2987) 0 * * Os_TE_373721 Chr4 18992947 18992948 - ORSiTETNOOT00144 607 0.0003 (1/2922) 0 * * Os_TE_373717 Chr4 18989337 18988996 + ORSgTEMT00100986 341 0.6293 (1876/2981) 1 Intact * Os_TE_373692 Chr4 18974411 18974412 - MERMITE18B 1306 0.0007 (1/1531) 0 * * Os_TE_373682 Chr4 18972313 18972314 + ORSgTEMT02400014 229 0.4541 (1347/2966) 0 * * Os_TE_373626 Chr4 18951715 18951716 + RIREX_LTR 8828 0.0013 (4/2986) 0 * Os_TE_373625 Os_TE_373625 Chr4 18951711 18951710 - RIREX_LTR 8828 0.0013 (4/2991) 0 * Os_TE_373626 Os_TE_373620 Chr4 18945015 18945014 - SZ-62LTR 3649 0.0003 (1/2944) 0 * * Os_TE_373619 Chr4 18943229 18943230 + ORSgTETNOOT00738 262 0.0023 (7/2982) 0 * * Os_TE_373603 Chr4 18932251 18932250 + Cassandra_OS-LTR 764 0.0007 (2/2908) -1 * * Os_TE_373582 Chr4 18924623 18924624 - COPI2_LTR 4733 0.0020 (6/2984) 0 * Os_TE_373581 Os_TE_373581 Chr4 18924619 18924618 + COPI2_LTR 4733 0.0017 (5/2986) 0 * Os_TE_373582 Os_TE_373576 Chr4 18922808 18922809 + OSTONOR1_LTR 6440 0.0003 (1/2992) 0 * Os_TE_373575 Os_TE_373575 Chr4 18922804 18922803 - OSTONOR1_LTR 6440 0.0003 (1/2993) 0 * Os_TE_373576 Os_TE_373574 Chr4 18922563 18922564 - RETRO2_LTR 12874 0.0027 (8/2983) 0 * Os_TE_373573 Os_TE_373573 Chr4 18922559 18922558 + RETRO2_LTR 12874 0.0027 (8/2986) 0 * Os_TE_373574 Os_TE_373550 Chr4 18915622 18915623 + SPMLIKE 10989 0.0007 (2/2994) 0 * Os_TE_373549 Os_TE_373549 Chr4 18915620 18915619 - ORSgTETN00200001 10994 0.0003 (1/2998) 0 * Os_TE_373550 Os_TE_373548 Chr4 18915399 18915400 + COPIA2-LTR_OS 6433 0.0003 (1/2983) 0 * Os_TE_373547 Os_TE_373547 Chr4 18915395 18915394 - COPIA2-LTR_OS 6433 0.0003 (1/2984) 0 * Os_TE_373548 Os_TE_373531 Chr4 18910278 18910277 - COPIA2-LTR_OS 6433 0.0003 (1/2940) 0 * * Os_TE_373517 Chr4 18903894 18903895 - MDR2 6967 0.0010 (3/2973) 0 * Os_TE_373516 Os_TE_373516 Chr4 18903886 18903885 - MDR2 6967 0.0010 (3/2978) 0 * Os_TE_373517 Os_TE_373501 Chr4 18902316 18902317 + ORSiTEMT01000008 242 0.0003 (1/2983) 0 * * Os_TE_373484 Chr4 18898914 18898915 + NDNA1TNA_OS 334 0.0044 (13/2987) 0 * * Os_TE_373483 Chr4 18897780 18897781 - COPI2_LTR 4733 0.0007 (2/2769) 0 * Os_TE_373482 Os_TE_373482 Chr4 18897776 18897775 + COPI2_LTR 4733 0.0011 (3/2783) 0 * Os_TE_373483 Os_TE_373453 Chr4 18882051 18882052 - RIREX_LTR 8828 0.0012 (3/2410) 0 * Os_TE_373452 Os_TE_373452 Chr4 18882047 18882046 + RIREX_LTR 8828 0.0012 (3/2410) 0 * Os_TE_373453 Os_TE_373440 Chr4 18878494 18878495 + OSTE33 1012 0.0033 (8/2416) 0 * Os_TE_373439 Os_TE_373439 Chr4 18878486 18878485 + OSTE33 1012 0.0033 (8/2416) 0 * Os_TE_373440 Os_TE_373438 Chr4 18878113 18878114 + COPIA2-LTR_OS 6433 0.0004 (1/2429) 0 * Os_TE_373437 Os_TE_373437 Chr4 18878109 18878108 - COPIA2-LTR_OS 6433 0.0004 (1/2424) 0 * Os_TE_373438 Os_TE_373422 Chr4 18871957 18871956 - RIREX_LTR 8828 0.0050 (12/2403) 0 * * Os_TE_373419 Chr4 18870332 18870333 - COPIA2-LTR_OS 6433 0.0008 (2/2407) 0 * Os_TE_373418 Os_TE_373418 Chr4 18870328 18870327 + COPIA2-LTR_OS 6433 0.0008 (2/2406) 0 * Os_TE_373419 Os_TE_373416 Chr4 18869600 18869599 - STOWAWAY51_OS 246 0.0004 (1/2400) 0 * * Os_TE_373390 Chr4 18862802 18862803 + ORSiTERTOOT00396 5939 0.0008 (2/2391) 0 * * Os_TE_373388 Chr4 18861830 18861831 - TYPEU1 380 0.3664 (1076/2937) 0 * * Os_TE_373380 Chr4 18861291 18861661 - TYPEU 362 0.6231 (1741/2794) 1 Intact * Os_TE_373373 Chr4 18857857 18857858 + DS-RICE4N 715 0.0013 (4/2963) 0 * Os_TE_373372 Os_TE_373372 Chr4 18857850 18857849 - DS-RICE2N 613 0.0013 (4/2967) 0 * Os_TE_373373 Os_TE_373316 Chr4 18829331 18829484 + ORSgTEMT01701109 142 0.7863 (2292/2915) 1 Intact * Os_TE_373313 Chr4 18828995 18827534 - CLOUD 734 0.8231 (2359/2866) 1 Intact * Os_TE_373267 Chr4 18800910 18800911 + COPI2_LTR 4733 0.0009 (2/2122) 0 * Os_TE_373266 Os_TE_373266 Chr4 18800906 18800905 - COPI2_LTR 4733 0.0014 (3/2120) 0 * Os_TE_373267 Os_TE_373211 Chr4 18778044 18778045 + CRATA-2 851 0.0004 (1/2851) 0 * * Os_TE_373173 Chr4 18760550 18760551 + COPI2_LTR 4733 0.0003 (1/2982) 0 * Os_TE_373172 Os_TE_373172 Chr4 18760546 18760545 - COPI2_LTR 4733 0.0003 (1/2983) 0 * Os_TE_373173 Os_TE_373171 Chr4 18760410 18760409 + RIREX_LTR 8828 0.0003 (1/2985) 0 * * Os_TE_373144 Chr4 18754476 18754130 - NDNA2TNA_OS 346 0.4183 (1234/2950) 1 Intact Os_TE_373140 Os_TE_373140 Chr4 18754129 18754476 + NDNA2TNA_OS 346 0.4245 (1239/2919) 1 Intact Os_TE_373144 Os_TE_373109 Chr4 18738384 18738385 - ORSgTEMT02400179 221 0.0010 (3/2993) 0 * Os_TE_373108 Os_TE_373108 Chr4 18738383 18738382 - TYPEM 227 0.0010 (3/2995) 0 * Os_TE_373109 Os_TE_373066 Chr4 18719853 18719852 + ORSgTEMT00500260 149 0.0020 (6/2961) 0 * * Os_TE_373058 Chr4 18717980 18717979 - STOWAWAY11_OS 292 0.0010 (3/2978) 0 * * Os_TE_372997 Chr4 18695040 18695039 + ORSgTETNOOT00646 261 0.0024 (7/2950) 0 * * Os_TE_372977 Chr4 18679083 18679084 - ORSgTERT00201216 11284 0.2683 (802/2989) 0 * Os_TE_372976 Os_TE_372976 Chr4 18679079 18679078 - RIRE2_LTR 11306 0.2691 (805/2992) 0 * Os_TE_372977 Os_TE_372894 Chr4 18648247 18648248 + ORSiTERT00200145 12238 0.2903 (864/2976) 0 * * Os_TE_372892 Chr4 18647986 18647987 + RETRO2A_LTR 12895 0.0067 (20/2992) 0 * Os_TE_372891 Os_TE_372891 Chr4 18647982 18647981 - RETRO2A_LTR 12895 0.0067 (20/2992) 0 * Os_TE_372892 Os_TE_372884 Chr4 18644441 18644440 + ENSPM4_OS 11610 0.0084 (25/2993) 0 * * Os_TE_372875 Chr4 18631597 18631598 + RETROSAT2LTR 12796 0.2833 (838/2958) 0 * Os_TE_372874 Os_TE_372874 Chr4 18631595 18631594 - RETROSAT2LTR 12796 0.2893 (861/2976) 0 * Os_TE_372875 Os_TE_372871 Chr4 18630482 18630481 - ORSgTEMT01702346 154 0.0027 (8/2960) 0 * Os_TE_372870 Os_TE_372870 Chr4 18630479 18630480 + ORSgTEMT01702244 132 0.0027 (8/2967) 0 * Os_TE_372871 Os_TE_372867 Chr4 18628731 18628730 + ORSgTEMT01601122 212 0.2882 (850/2949) 0 * Os_TE_372866 Os_TE_372866 Chr4 18628728 18628729 + ORSgTEMT01601122 212 0.2862 (844/2949) 0 * Os_TE_372867 Os_TE_372860 Chr4 18624988 18624989 - SZ-55_LTR 10318 0.0067 (20/2969) 0 * Os_TE_372859 Os_TE_372859 Chr4 18624984 18624983 + SZ-55_LTR 10318 0.0071 (21/2970) 0 * Os_TE_372860 Os_TE_372849 Chr4 18622846 18622845 + TNR2A 152 0.2988 (888/2972) 0 * * Os_TE_372848 Chr4 18622839 18622838 - OSTE21 1271 0.0477 (102/2139) 0 * Os_TE_372847 Os_TE_372847 Chr4 18622830 18622831 + OSTE21 1271 0.0514 (110/2138) 0 * Os_TE_372848 Os_TE_372844 Chr4 18621497 18621498 + RIREX_LTR 8828 0.0003 (1/2988) 0 * Os_TE_372843 Os_TE_372843 Chr4 18621493 18621492 - RIREX_LTR 8828 0.0003 (1/2994) 0 * Os_TE_372844 Os_TE_372842 Chr4 18621444 18621445 + ORSiTERTOOT00269 10834 0.2933 (868/2959) 0 * Os_TE_372841 Os_TE_372841 Chr4 18621440 18621439 - ORSiTERTOOT00269 10834 0.3039 (907/2985) 0 * Os_TE_372842 Os_TE_372835 Chr4 18620379 18620533 - ORSgTETN00200001 10994 0.7268 (2126/2925) 1 Intact * Os_TE_372815 Chr4 18611706 18611707 + COPIA2-LTR_OS 6433 0.0003 (1/2956) 0 * Os_TE_372814 Os_TE_372814 Chr4 18611702 18611701 - COPIA2-LTR_OS 6433 0.0005 (1/2131) 0 * Os_TE_372815 Os_TE_372798 Chr4 18603099 18603100 - SC-3_LTR 5748 0.0003 (1/2992) 0 * * Os_TE_372795 Chr4 18602570 18602571 + ORSgTEMT00101231 340 0.5535 (1644/2970) 0 * Os_TE_372794 Os_TE_372794 Chr4 18602569 18602568 - ORSgTEMT00100854 331 0.5560 (1662/2989) 0 * Os_TE_372795 Os_TE_372792 Chr4 18598838 18598690 - ORSgTEMT00500110 151 0.6016 (1389/2309) 1 Intact * Os_TE_372771 Chr4 18589204 18589203 - ORSgTEMT00500102 149 0.0007 (1/1401) 0 * * Os_TE_372760 Chr4 18585039 18585040 - COPIA2-LTR_OS 6433 0.0003 (1/2926) 0 * * Os_TE_372755 Chr4 18583637 18583636 + ORSgTEMT01601345 234 0.0007 (2/2841) 0 * * Os_TE_372753 Chr4 18583327 18576878 - COPIA2-LTR_OS 6433 0.2632 (760/2888) 1 Intact Os_TE_372750 Os_TE_372750 Chr4 18576878 18583327 + COPIA2-LTR_OS 6433 0.2505 (714/2850) 1 Intact Os_TE_372753 Os_TE_372732 Chr4 18573123 18573122 + AMYLTP 383 0.0032 (9/2833) 0 * * Os_TE_372713 Chr4 18567921 18567922 + SPMLIKE 10989 0.0009 (2/2266) 0 * * Os_TE_372711 Chr4 18567415 18567416 - CACTA-L 1162 0.5311 (1462/2753) 0 * * Os_TE_372710 Chr4 18566655 18566656 + ORSiTERTOOT00226 792 0.0003 (1/2968) 0 * Os_TE_372709 Os_TE_372709 Chr4 18566651 18566650 - SZ-22_LTR 4403 0.0003 (1/2973) 0 * Os_TE_372710 Os_TE_372690 Chr4 18547744 18547745 - ORSiTERTOOT00086 525 0.5533 (1645/2973) 0 * * Os_TE_372689 Chr4 18547095 18547096 - CACTA-J 1159 0.0003 (1/2966) 0 * * Os_TE_372682 Chr4 18545559 18545560 - TNR11 811 0.0024 (7/2964) 0 * * Os_TE_372678 Chr4 18543349 18543348 + SEVERIN-2 1952 0.0003 (1/2939) 0 * * Os_TE_372635 Chr4 18519177 18518939 + ORSgTETNOOT00908 242 0.4530 (1341/2960) 1 Intact * Os_TE_372632 Chr4 18518709 18518708 + SZ-48LTR 3632 0.0013 (4/2984) 0 * * Os_TE_372604 Chr4 18505113 18505114 - ORSgTEMT03800066 376 0.0021 (6/2797) 0 * * Os_TE_372591 Chr4 18501424 18501423 + ORSgTEMT01601445 230 0.7120 (1993/2799) 0 * * Os_TE_372569 Chr4 18495557 18495917 + ORSgTEMT00600124 361 0.4549 (1355/2979) 1 Intact * Os_TE_372568 Chr4 18495033 18495034 - ORSgTEMT00700002 381 0.0020 (6/2990) 0 * Os_TE_372567 Os_TE_372567 Chr4 18495032 18495031 + MUDRN5_OS 374 0.0017 (5/2985) 0 * Os_TE_372568 Os_TE_372564 Chr4 18493984 18493985 - ORSgTERT00201216 11284 0.2610 (780/2988) 0 * Os_TE_372563 Os_TE_372563 Chr4 18493980 18493979 - RIRE2_LTR 11306 0.2622 (785/2994) 0 * Os_TE_372564 Os_TE_372518 Chr4 18477214 18477215 - ORSiTETNOOT00134 607 0.0007 (1/1381) 0 * Os_TE_372517 Os_TE_372517 Chr4 18477207 18477206 + TWIF 586 0.0007 (1/1381) 0 * Os_TE_372518 Os_TE_372510 Chr4 18473877 18473878 + ORSgTEMT02500006 212 0.5379 (1534/2852) 0 * * Os_TE_372509 Chr4 18472280 18471887 - OSTE9 421 0.4397 (1284/2920) 1 Intact Os_TE_372507 Os_TE_372507 Chr4 18471886 18472280 - OSTE9 421 0.4475 (1313/2934) 1 Intact Os_TE_372509 Os_TE_372478 Chr4 18457443 18457203 + ORSgTEMT01602665 238 0.4540 (1333/2936) 1 Intact * Os_TE_372474 Chr4 18457026 18457027 - TREP219 104 0.5769 (1651/2862) 0 * * Os_TE_372473 Chr4 18456922 18456923 - ORSgTEMT01600639 228 0.0003 (1/2894) 0 * * Os_TE_372459 Chr4 18435386 18435385 + STOWAWAY13_OS 251 0.5674 (1670/2943) 0 * * Os_TE_372448 Chr4 18432796 18432795 + BAJIELTR 4500 0.5463 (1606/2940) 0 * * Os_TE_372441 Chr4 18427520 18427521 + CPSC4B_LTR 5343 0.5471 (1596/2917) 0 * * Os_TE_372439 Chr4 18425259 18425258 + ORSgTEMT01701224 156 0.5599 (1678/2997) 0 * Os_TE_372438 Os_TE_372438 Chr4 18425256 18425257 - ORSgTEMT01700216 124 0.5507 (1636/2971) 0 * Os_TE_372439 Os_TE_372434 Chr4 18422701 18422553 - ORSgTEMT00500832 146 0.4522 (1347/2979) 1 Intact Os_TE_372432 Os_TE_372432 Chr4 18422551 18422694 + ORSiTEMT03300001 145 0.5214 (1378/2643) 1 Intact Os_TE_372434 Os_TE_372422 Chr4 18417620 18417619 + TNR2A 152 0.0020 (6/2960) 0 * * Os_TE_372392 Chr4 18400984 18400983 - ORSgTEMT02400246 177 0.0007 (2/2984) 0 * Os_TE_372391 Os_TE_372391 Chr4 18400983 18400984 - TYPEM 227 0.0007 (2/2985) 0 * Os_TE_372392 Os_TE_372390 Chr4 18400845 18400846 - MuDR3_OS 8604 0.0003 (1/2952) 0 * Os_TE_372389 Os_TE_372389 Chr4 18400836 18400835 - MuDR3_OS 8604 0.0003 (1/2951) 0 * Os_TE_372390 Os_TE_372344 Chr4 18394363 18394362 - SZ-22_LTR 4403 0.0004 (1/2546) 0 * * Os_TE_372328 Chr4 18385591 18385592 + ORSiTERTOOT00296 5553 0.0003 (1/2978) 0 * Os_TE_372327 Os_TE_372327 Chr4 18385587 18385586 - SC-3_LTR 5748 0.0003 (1/2983) 0 * Os_TE_372328 Os_TE_372321 Chr4 18382136 18381480 + ORSiTETN00100011 676 0.4873 (1383/2838) 1 Intact * Os_TE_372316 Chr4 18378708 18378707 + ORSgTEMT00900053 249 0.0044 (12/2737) 0 * * Os_TE_372309 Chr4 18369278 18369277 + ORSgTEMT01400012 212 0.0057 (17/2985) 0 * * Os_TE_372306 Chr4 18367663 18366391 - MERMITE18B 1306 0.4116 (822/1997) 1 Intact Os_TE_372303 Os_TE_372303 Chr4 18366386 18367663 + MERMITEB 1610 0.3070 (844/2749) 1 Intact Os_TE_372306 Os_TE_372228 Chr4 18323846 18324092 - ORSgTEMT01600639 228 0.5021 (842/1677) 1 Intact Os_TE_372227 Os_TE_372227 Chr4 18323817 18323668 - ORSgTEMT00502293 151 0.5781 (862/1491) 1 Intact Os_TE_372228 Os_TE_372222 Chr4 18322021 18322022 + OSTE20 496 0.0022 (2/893) 0 * * Os_TE_372146 Chr4 18279268 18279267 + COPIA2-LTR_OS 6433 0.0007 (2/2993) 0 * * Os_TE_372138 Chr4 18275329 18275330 - COPIA2-LTR_OS 6433 0.0004 (1/2838) 0 * Os_TE_372137 Os_TE_372137 Chr4 18275325 18275324 + COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_372138 Os_TE_372105 Chr4 18254461 18254460 - ORSgTETN00200002 7303 0.5533 (1656/2993) 0 * * Os_TE_372101 Chr4 18253974 18253973 - OSTE17 734 0.0010 (3/2958) 0 * * Os_TE_372099 Chr4 18253114 18253115 + OSTE33 1012 0.5512 (1609/2919) 0 * Os_TE_372098 Os_TE_372098 Chr4 18253105 18253104 + OSTE33 1012 0.5429 (1551/2857) 0 * Os_TE_372099 Os_TE_372059 Chr4 18237793 18237792 - RIRE5-LTR_OS 6427 0.6897 (1676/2430) 0 * * Os_TE_372043 Chr4 18227699 18227700 + ORSgTEMT01701265 147 0.0003 (1/2968) 0 * * Os_TE_372014 Chr4 18213167 18213168 + COPI2_LTR 4733 0.0030 (9/2979) 0 * * Os_TE_372012 Chr4 18212679 18212680 - ORSgTEMT01602413 239 0.0007 (2/2814) 0 * * Os_TE_372011 Chr4 18212167 18212166 + COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * * Os_TE_372010 Chr4 18211463 18210045 - OSTE33 1012 0.2878 (857/2978) 1 Intact Os_TE_372009 Os_TE_372009 Chr4 18210045 18211463 + OSTE33 1012 0.2349 (658/2801) 1 Intact Os_TE_372010 Os_TE_372006 Chr4 18209629 18209630 + TRUNCATOR 2918 0.0004 (1/2577) 0 * * Os_TE_372002 Chr4 18208718 18208719 - ORSgTEMT01601432 239 0.0007 (2/2976) 0 * * Os_TE_371999 Chr4 18207002 18207198 - COWARD 200 0.4762 (1392/2923) 1 Intact * Os_TE_371998 Chr4 18206634 18206439 + ORSgTEMT01400003 213 0.4509 (1341/2974) 1 Intact Os_TE_371995 Os_TE_371995 Chr4 18206411 18206632 + STOWAWAY9_OS 235 0.4541 (1345/2962) 1 Intact Os_TE_371998 Os_TE_371987 Chr4 18198639 18198640 - MPING 430 0.0014 (4/2795) 0 * Os_TE_371986 Os_TE_371986 Chr4 18198637 18198636 + MPING 430 0.0018 (5/2781) 0 * Os_TE_371987 Os_TE_371985 Chr4 18197735 18197736 - TYPEM 227 0.0004 (1/2848) 0 * Os_TE_371984 Os_TE_371984 Chr4 18197734 18197733 - ORSgTEMT02400179 221 0.0003 (1/2869) 0 * Os_TE_371985 Os_TE_371924 Chr4 18177182 18177183 + TWIFB1 3737 0.0010 (1/1024) -1 * * Os_TE_371889 Chr4 18161987 18161986 - STOWAWAY1_OS 149 0.0027 (8/2988) 0 * * Os_TE_371885 Chr4 18161685 18161684 - TREP215 239 0.1673 (498/2976) 0 * * Os_TE_371883 Chr4 18161585 18161586 - SPMLIKE 10989 0.0004 (1/2482) 0 * * Os_TE_371879 Chr4 18160657 18160658 - STOWAWAY51_OS 246 0.0004 (1/2513) 0 * * Os_TE_371878 Chr4 18160347 18160112 + ORSgTEMT01602250 243 0.8559 (2506/2928) 1 Intact * Os_TE_371865 Chr4 18154992 18154991 + MUDRN1_OS 764 0.0030 (9/2961) 0 * * Os_TE_371863 Chr4 18154759 18154760 - AMYLTP 383 0.0003 (1/2991) 0 * * Os_TE_371837 Chr4 18149408 18149409 - COPI2_LTR 4733 0.0003 (1/2859) 0 * * Os_TE_371834 Chr4 18147637 18147636 + WUWU 113 0.4757 (1420/2985) 0 * * Os_TE_371833 Chr4 18146785 18146786 - SZ-67LTR 1540 0.4796 (1423/2967) 0 * * Os_TE_371826 Chr4 18145005 18145259 - TAMI2 254 0.5297 (1559/2943) 1 Intact * Os_TE_371818 Chr4 18143782 18144020 - ORSgTEMT01602413 239 0.5342 (1585/2967) 1 Intact * Os_TE_371816 Chr4 18143596 18143597 - TYPEM 227 0.0003 (1/2984) 0 * * Os_TE_371812 Chr4 18142776 18142777 + COPIA1-LTR_OS 9292 0.4812 (1435/2982) 0 * * Os_TE_371806 Chr4 18140680 18140681 - RIRE5-LTR_OS 6427 0.1591 (263/1653) 0 * * Os_TE_371803 Chr4 18139582 18139583 - ORSiTERTOOT00427 5125 0.2829 (467/1651) 0 * Os_TE_371802 Os_TE_371802 Chr4 18139578 18139577 + ORSiTERTOOT00427 5125 0.2877 (475/1651) 0 * Os_TE_371803 Os_TE_371787 Chr4 18124545 18124546 - RETROSAT4_LTR 13504 0.0011 (1/932) 0 * * Os_TE_371770 Chr4 18117658 18124278 - SEVERIN-2 1952 0.6689 (810/1211) 1 Intact * Os_TE_371769 Chr4 18116423 18115388 + CACTA-I 1124 0.6515 (916/1406) 1 Intact * Os_TE_371764 Chr4 18114693 18114694 - ORSgTEMT00901723 248 0.1622 (259/1597) 0 * * Os_TE_371739 Chr4 18107022 18107021 + ENSPM3_OS 10837 0.0020 (6/2961) 0 * * Os_TE_371727 Chr4 18103413 18103664 - STOWAWAY8_OS 259 0.7837 (866/1105) 1 Intact * Os_TE_371719 Chr4 18098330 18098329 - SZ-67LTR 1540 0.5102 (1077/2111) 0 * * Os_TE_371713 Chr4 18087328 18087329 + RIREX_LTR 8828 0.0028 (3/1085) 0 * * Os_TE_371711 Chr4 18087108 18087109 + COPIA2-LTR_OS 6433 0.0010 (3/2875) 0 * * Os_TE_371705 Chr4 18086219 18085908 - ORSgTEMT00100086 339 0.8961 (897/1001) 1 Intact * Os_TE_371690 Chr4 18080724 18079654 - SETARIA1 1293 0.4277 (1030/2408) 1 Intact * Os_TE_371689 Chr4 18079127 18078876 - ORSiOTOT00000037 220 0.3698 (873/2361) 1 Intact * Os_TE_371669 Chr4 18071265 18071266 + ORSgTEMT01602181 239 0.5812 (1389/2390) 0 * * Os_TE_371666 Chr4 18071124 18071123 - ORSgTEMT01602413 239 0.0034 (10/2937) 0 * * Os_TE_371659 Chr4 18068911 18068910 - F569 228 0.0022 (2/926) 0 * * Os_TE_371658 Chr4 18068816 18068815 + MERMITEA 1710 0.0014 (2/1401) 0 * * Os_TE_371642 Chr4 18065260 18065259 + ORSgTEMT01602181 239 0.0016 (4/2521) 0 * Os_TE_371641 Os_TE_371641 Chr4 18065257 18065258 - ORSgTEMT01602404 253 0.0010 (2/1905) 0 * Os_TE_371642 Os_TE_371638 Chr4 18059272 18058127 - ORSgTETN00200001 10994 0.3431 (866/2524) 1 Intact Os_TE_371632 Os_TE_371632 Chr4 18058125 18059272 + CACTA-B 1103 0.3404 (853/2506) 1 Intact Os_TE_371638 Os_TE_371616 Chr4 18048446 18048240 - ORSgTEMT01602413 239 0.6404 (1886/2945) 1 Intact * Os_TE_371597 Chr4 18039825 18039669 - ORSgTEMT01701348 105 0.6651 (1946/2926) 1 Intact Os_TE_371593 Os_TE_371593 Chr4 18039668 18039823 + ORSgTEMT01701478 178 0.6590 (1950/2959) 1 Intact Os_TE_371597 Os_TE_371569 Chr4 18027540 18027539 + GYPSY1-LTR_OS 8900 0.0015 (4/2706) 0 * * Os_TE_371567 Chr4 18027526 18027525 + RIREX_LTR 8828 0.0008 (2/2662) 0 * * Os_TE_371561 Chr4 18023868 18023869 + RIREX_LTR 8828 0.0003 (1/2916) 0 * * Os_TE_371559 Chr4 18023574 18016831 + MuDR2_OS 6770 0.4021 (1050/2611) -1 Intact Os_TE_371558 Os_TE_371558 Chr4 18016831 18023574 - MuDR2_OS 6770 0.3531 (953/2699) 1 Intact Os_TE_371559 Os_TE_371552 Chr4 18015205 18015542 - ORSgTEMT00101161 337 0.8960 (1198/1337) 1 Intact * Os_TE_371550 Chr4 18015190 18015541 + ORSgTEMT00100828 349 0.8981 (2396/2668) 1 Intact * Os_TE_371547 Chr4 18013190 18013191 - TYPEM 227 0.0967 (286/2959) 0 * * Os_TE_371544 Chr4 18011483 18011482 + ORSiTERTOOT00097 759 0.0032 (4/1247) 0 * * Os_TE_371541 Chr4 18010768 18010769 - MERMITE18B 1306 0.0809 (109/1348) 0 * * Os_TE_371533 Chr4 18005671 18005670 + STOWAWAY50_OS 174 0.0049 (6/1216) 0 * * Os_TE_371530 Chr4 18003205 18003206 + RIREX_LTR 8828 0.0014 (2/1417) 0 * Os_TE_371529 Os_TE_371529 Chr4 18003201 18003200 - RIREX_LTR 8828 0.0017 (2/1212) 0 * Os_TE_371530 Os_TE_371527 Chr4 18002568 18002567 - STOWAWAY51_OS 246 0.0017 (2/1212) 0 * * Os_TE_371523 Chr4 18000454 18000455 - RIREX_LTR 8828 0.0027 (4/1492) 0 * Os_TE_371522 Os_TE_371522 Chr4 18000450 18000449 + RIREX_LTR 8828 0.0026 (4/1510) 0 * Os_TE_371523 Os_TE_371521 Chr4 18000298 18000297 + ORSgTEMT00502094 140 0.0025 (4/1583) 0 * * Os_TE_371513 Chr4 17998678 17998677 - HELITRON4_OS 13190 0.0006 (1/1782) 0 * * Os_TE_371381 Chr4 17944059 17944060 + ORSiCMCM00100019 2717 0.0033 (4/1228) 0 * Os_TE_371380 Os_TE_371380 Chr4 17944055 17944054 - TRUNCATOR2_LTR 2904 0.0033 (4/1226) 0 * Os_TE_371381 Os_TE_371370 Chr4 17937647 17937646 - ORSgTEMT01601208 238 0.1626 (434/2669) 0 * * Os_TE_371351 Chr4 17932509 17932510 + MPING 430 0.0004 (1/2709) 0 * * Os_TE_371348 Chr4 17932345 17932344 + SETARIA2 1142 0.0007 (2/2673) 0 * * Os_TE_371347 Chr4 17932103 17931851 - INDITTO 263 0.4550 (1208/2655) 1 Intact * Os_TE_371343 Chr4 17931079 17931078 - STOWAWAY51_OS 246 0.0004 (1/2582) 0 * * Os_TE_371335 Chr4 17929248 17929247 + MERMITE18D 1491 0.0076 (19/2503) 0 * * Os_TE_371332 Chr4 17927436 17927437 + NDNA1TNA_OS 334 0.0071 (18/2544) 0 * * Os_TE_371316 Chr4 17925961 17926154 + ORSgTEMT02000020 195 0.6169 (1639/2657) 1 Intact * Os_TE_371310 Chr4 17924416 17924417 + ORSiTERTOOT00250 3262 0.0030 (5/1682) 0 * * Os_TE_371309 Chr4 17923879 17923878 - STOWAWAY48_OS 261 0.3996 (1069/2675) 0 * Os_TE_371308 Os_TE_371308 Chr4 17923876 17923877 + ORSgTEMT02300016 250 0.3967 (1060/2672) 0 * Os_TE_371309 Os_TE_371306 Chr4 17923707 17923562 + ORSgTEMT00500176 153 0.6203 (1663/2681) 1 Intact * Os_TE_371277 Chr4 17920189 17920036 + ORSgTEMT01701388 146 0.7513 (1610/2143) 1 Intact Os_TE_371275 Os_TE_371275 Chr4 17920043 17920186 - ORSgTEMT00200027 144 0.6039 (1474/2441) 1 Intact Os_TE_371277 Os_TE_371253 Chr4 17917101 17916872 - ORSgTEMT01602292 239 0.6357 (1654/2602) 1 Intact Os_TE_371251 Os_TE_371251 Chr4 17916865 17917101 - ORSgTEMT01601493 303 0.6122 (1642/2682) 1 Intact Os_TE_371253 Os_TE_371250 Chr4 17915297 17915298 + RPO_OS 1983 0.3846 (1022/2657) 0 * * Os_TE_371249 Chr4 17915182 17915181 - ORSgTEMT01701254 154 0.3911 (1043/2667) 0 * * Os_TE_371242 Chr4 17914743 17915108 - TYPEH 309 0.6215 (1639/2637) 1 Intact * Os_TE_371240 Chr4 17913360 17913361 - COPI2_LTR 4733 0.0004 (1/2718) 0 * Os_TE_371239 Os_TE_371239 Chr4 17913356 17913355 + COPI2_LTR 4733 0.0004 (1/2730) 0 * Os_TE_371240 Os_TE_371226 Chr4 17910259 17910260 + COPI2_LTR 4733 0.0003 (1/2981) 0 * Os_TE_371225 Os_TE_371225 Chr4 17910255 17910254 - COPI2_LTR 4733 0.0003 (1/2981) 0 * Os_TE_371226 Os_TE_371224 Chr4 17910211 17910210 - ENSPM4_OS 11610 0.0925 (276/2983) 0 * * Os_TE_371223 Chr4 17909990 17909991 - COPI2_LTR 4733 0.0003 (1/2982) 0 * Os_TE_371222 Os_TE_371222 Chr4 17909986 17909985 + COPI2_LTR 4733 0.0003 (1/2988) 0 * Os_TE_371223 Os_TE_371221 Chr4 17909969 17909970 - RIREX_LTR 8828 0.0010 (3/2990) 0 * Os_TE_371220 Os_TE_371220 Chr4 17909965 17909964 + RIREX_LTR 8828 0.0010 (3/2988) 0 * Os_TE_371221 Os_TE_371218 Chr4 17907993 17907994 + SPMLIKE 10989 0.0007 (2/2971) 0 * * Os_TE_371216 Chr4 17907244 17907245 + RIRE5-LTR_OS 6427 0.1581 (472/2986) 0 * Os_TE_371215 Os_TE_371215 Chr4 17907237 17907236 - RIRE5-LTR_OS 6427 0.1610 (481/2988) 0 * Os_TE_371216 Os_TE_371214 Chr4 17907101 17907100 - TRUNCATOR 2918 0.1508 (272/1804) 0 * * Os_TE_371206 Chr4 17905017 17905888 - Cassandra_OS-LTR 764 0.4839 (1249/2581) 1 Intact * Os_TE_371184 Chr4 17899855 17898012 + RPO_OS 1983 0.5036 (1258/2498) 1 Intact * Os_TE_371155 Chr4 17889737 17889738 + ORSgTEMT01602051 240 0.0784 (199/2539) 0 * * Os_TE_371152 Chr4 17888326 17888327 + ORSiTERTOOT00034 791 0.0008 (2/2573) 0 * * Os_TE_371147 Chr4 17882896 17882897 - MuDR3_OS 8604 0.1319 (307/2327) 0 * Os_TE_371146 Os_TE_371146 Chr4 17882887 17882886 - MuDR3_OS 8604 0.1430 (336/2349) 0 * Os_TE_371147 Os_TE_371122 Chr4 17877903 17877902 - STOWAWAY51_OS 246 0.0004 (1/2794) 0 * Os_TE_371120 Os_TE_371120 Chr4 17877890 17877891 + ORSgTEMT00100272 356 0.0635 (189/2976) 0 * Os_TE_371122 Os_TE_371116 Chr4 17873256 17873255 + ORSgTETNOOT01275 140 0.0011 (3/2798) 0 * * Os_TE_371113 Chr4 17871889 17871890 + ENSPM_OS 9843 0.1123 (307/2733) 0 * Os_TE_371112 Os_TE_371112 Chr4 17871887 17871886 - ENSPM_OS 9843 0.1326 (368/2776) 0 * Os_TE_371113 Os_TE_371111 Chr4 17871474 17871475 + MERMITEB 1610 0.0018 (5/2738) 0 * * Os_TE_371101 Chr4 17870087 17870308 - TAMI2 254 0.8957 (2474/2762) 1 Intact * Os_TE_371087 Chr4 17848531 17865097 - MuDR3_OS 8604 0.3057 (727/2378) -1 Intact * Os_TE_371082 Chr4 17844884 17844885 - RIREX_LTR 8828 0.0082 (11/1349) 0 * * Os_TE_371076 Chr4 17843330 17843331 - MERMITEA 1710 0.2166 (370/1708) 0 * * Os_TE_371072 Chr4 17841889 17841890 - ORSgTETNOOT00355 222 0.0040 (7/1729) 0 * Os_TE_371071 Os_TE_371071 Chr4 17841880 17841879 + ORSgTETNOOT00072 203 0.0046 (8/1730) 0 * Os_TE_371072 Os_TE_371069 Chr4 17840747 17840103 - GYPSY1-LTR_OS 8900 0.7946 (1350/1699) 1 Solo_LTR * Os_TE_371059 Chr4 17838550 17838549 + ORSgTETNOOT00908 242 0.0007 (2/2993) 0 * * Os_TE_371049 Chr4 17832629 17832630 - ORSiCMCM00100013 9728 0.5679 (1686/2969) 0 * * Os_TE_371048 Chr4 17831400 17831401 + SZ-50_LTR 11691 0.4959 (1321/2664) 0 * * Os_TE_371045 Chr4 17830916 17830917 - ORSgTEMT01601208 238 0.1157 (342/2956) 0 * * Os_TE_371038 Chr4 17830416 17830415 - ORSgTEMT00101174 225 0.2710 (779/2875) 0 * Os_TE_371037 Os_TE_371037 Chr4 17830415 17830416 - STOWAWAY10_OS 259 0.2792 (792/2837) 0 * Os_TE_371038 Os_TE_371023 Chr4 17816619 17816618 + SPMLIKE 10989 0.0007 (2/2994) 0 * * Os_TE_371006 Chr4 17810384 17802357 - GYPSY1-LTR_OS 8900 0.6119 (1561/2551) 1 Intact Os_TE_370980 Os_TE_370980 Chr4 17797605 17810384 + GYPSY1-LTR_OS 8900 0.5891 (1487/2524) 1 Intact Os_TE_371006 Os_TE_370978 Chr4 17796923 17796924 - CRM-LTR_OS 7749 0.0007 (2/2815) 0 * * Os_TE_370977 Chr4 17796784 17793229 + TRUNCATOR2_LTR 2904 0.5221 (1499/2871) 1 Intact Os_TE_370971 Os_TE_370971 Chr4 17793229 17796784 - TRUNCATOR2_LTR 2904 0.5387 (1551/2879) 1 Intact Os_TE_370977 Os_TE_370965 Chr4 17792658 17793000 + OLO24 345 0.8209 (1549/1887) 1 Intact * Os_TE_370962 Chr4 17792586 17792585 + NDNA1TNA_OS 334 0.0011 (2/1892) 0 * * Os_TE_370959 Chr4 17789140 17789141 + OLO24 345 0.0014 (4/2861) 0 * * Os_TE_370956 Chr4 17788594 17788595 + COPIA2-LTR_OS 6433 0.0007 (2/2794) 0 * * Os_TE_370949 Chr4 17787762 17787763 - RETRO1_LTR 8314 0.2805 (783/2791) 0 * Os_TE_370948 Os_TE_370948 Chr4 17787758 17787757 + RETRO2_LTR 12874 0.2713 (739/2724) 0 * Os_TE_370949 Os_TE_370944 Chr4 17786819 17786818 + ORSgTERT00200703 412 0.0004 (1/2833) 0 * * Os_TE_370900 Chr4 17771281 17771282 + RIREX_LTR 8828 0.0065 (17/2629) 0 * Os_TE_370899 Os_TE_370899 Chr4 17771277 17771276 - RIREX_LTR 8828 0.0071 (18/2524) 0 * Os_TE_370900 Os_TE_370890 Chr4 17768776 17768777 + UNIQUE 158 0.4126 (1161/2814) 0 * * Os_TE_370889 Chr4 17768661 17768662 - SZ-5LTR 1223 0.2935 (811/2763) 0 * * Os_TE_370879 Chr4 17765800 17765799 - SPMLIKE 10989 0.2749 (767/2790) 0 * * Os_TE_370875 Chr4 17765223 17765224 - YOUREN 286 0.0014 (4/2925) 0 * * Os_TE_370873 Chr4 17764675 17755652 + ORSiTERT00100063 7723 0.3129 (873/2790) 1 Intact Os_TE_370862 Os_TE_370862 Chr4 17755652 17764671 - ORSiTERT00100063 7723 0.5149 (897/1742) 1 Intact Os_TE_370873 Os_TE_370850 Chr4 17739557 17739556 + SZ-9LTR 965 0.0004 (1/2680) 0 * * Os_TE_370849 Chr4 17739493 17739308 - SNAP-OL3 189 0.3043 (888/2918) 1 Intact Os_TE_370848 Os_TE_370848 Chr4 17739307 17739491 + SNAP-OL3 189 0.7925 (882/1113) 1 Intact Os_TE_370849 Os_TE_370840 Chr4 17736692 17736454 - TREP215 239 0.4644 (849/1828) 1 Intact * Os_TE_370833 Chr4 17733910 17733909 - ORSgTETNOOT02143 185 0.4955 (766/1546) 0 * * Os_TE_370827 Chr4 17732946 17734825 + MERMITEB 1610 0.5518 (836/1515) 1 Intact * Os_TE_370826 Chr4 17732290 17732291 + CACTA-L 1162 0.5663 (1140/2013) 0 * * Os_TE_370825 Chr4 17732096 17732097 + COPIA2-LTR_OS 6433 0.2880 (680/2361) 0 * * Os_TE_370817 Chr4 17728910 17728909 + SEVERIN-2 1952 0.0025 (7/2848) 0 * * Os_TE_370816 Chr4 17728658 17728438 - ORSgTEMT01702216 170 0.3259 (868/2663) 1 Intact Os_TE_370811 Os_TE_370811 Chr4 17728438 17728540 + ORSgTEMT01701663 106 0.4543 (874/1924) 1 Intact Os_TE_370816 Os_TE_370810 Chr4 17728404 17728405 - ORSgTEMT00101116 321 0.2835 (726/2561) 0 * * Os_TE_370809 Chr4 17726759 17726760 - RIRE2_LTR 11306 0.0016 (3/1908) 0 * * Os_TE_370805 Chr4 17726232 17726233 - SZ-48LTR 3632 0.3477 (1007/2896) 0 * Os_TE_370804 Os_TE_370804 Chr4 17726228 17726227 + SZ-48LTR 3632 0.3424 (985/2877) 0 * Os_TE_370805 Os_TE_370800 Chr4 17723412 17723413 + SPMLIKE 10989 0.1324 (284/2145) 0 * Os_TE_370799 Os_TE_370799 Chr4 17723408 17723407 - CACTA-H 1152 0.2547 (633/2485) 0 * Os_TE_370800 Os_TE_370798 Chr4 17722683 17722684 - CLOUD-6 508 0.1464 (324/2213) 0 * * Os_TE_370796 Chr4 17722561 17722562 - STOWAWAY1_OS 149 0.1580 (348/2202) 0 * * Os_TE_370793 Chr4 17721553 17721554 - ORSgTEMT01602467 227 0.0966 (180/1864) 0 * * Os_TE_370792 Chr4 17721381 17721382 - AMYLTP 383 0.1027 (197/1919) 0 * * Os_TE_370791 Chr4 17720936 17720935 + ORSiTETNOOT00107 906 0.1014 (194/1914) 0 * Os_TE_370790 Os_TE_370790 Chr4 17720932 17720933 - ORSiTETNOOT00107 906 0.1017 (195/1918) 0 * Os_TE_370791 Os_TE_370789 Chr4 17720692 17720693 - RIREX_LTR 8828 0.2514 (484/1925) 0 * Os_TE_370788 Os_TE_370788 Chr4 17720688 17720687 + RIREX_LTR 8828 0.2505 (482/1924) 0 * Os_TE_370789 Os_TE_370787 Chr4 17720460 17720461 - ORSgTEMT02400179 221 0.0651 (194/2981) 0 * Os_TE_370786 Os_TE_370786 Chr4 17720459 17720458 - TYPEM 227 0.0656 (194/2959) 0 * Os_TE_370787 Os_TE_370783 Chr4 17720110 17720111 - RIRE2_LTR 11306 0.1914 (475/2482) 0 * * Os_TE_370781 Chr4 17720103 17720104 - SZ-9LTR 965 0.0105 (18/1714) 0 * * Os_TE_370775 Chr4 17719829 17720152 + ORSgTEMT00101387 334 0.6243 (1861/2981) 1 Intact * Os_TE_370774 Chr4 17719230 17719229 - ENSPM4_OS 11610 0.2601 (490/1884) 0 * * Os_TE_370770 Chr4 17716991 17716753 + ORSgTEMT01601934 207 0.8979 (1697/1890) 1 Intact * Os_TE_370758 Chr4 17710821 17709454 + OSTE33 1012 0.8161 (1708/2093) 1 Intact Os_TE_370755 Os_TE_370755 Chr4 17709453 17710821 + OSTE33 1012 0.5630 (1666/2959) 1 Intact Os_TE_370758 Os_TE_370744 Chr4 17706838 17706839 - SPMLIKE 10989 0.0977 (183/1873) 0 * * Os_TE_370725 Chr4 17702448 17702449 + ENSPM4_OS 11610 0.2512 (474/1887) 0 * * Os_TE_370724 Chr4 17702093 17702092 + TREP215 239 0.0016 (3/1901) 0 * Os_TE_370723 Os_TE_370723 Chr4 17702090 17702091 + ORSgTEMT01602141 239 0.0016 (3/1892) 0 * Os_TE_370724 Os_TE_370717 Chr4 17700692 17700693 - ORSiTETNOOT00108 1348 0.0067 (13/1928) 0 * * Os_TE_370714 Chr4 17697064 17697065 - ORSgTEMT02400179 221 0.0003 (1/2938) 0 * * Os_TE_370713 Chr4 17696123 17682160 + RETROSAT4_LTR 13504 0.6490 (1832/2823) 1 Intact * Os_TE_370683 Chr4 17677878 17677879 - F524 291 0.0068 (20/2927) 0 * Os_TE_370682 Os_TE_370682 Chr4 17677863 17677862 + F524 291 0.0065 (19/2944) 0 * Os_TE_370683 Os_TE_370672 Chr4 17675534 17675535 - ORSgTEMT01601493 303 0.0653 (192/2941) 0 * * Os_TE_370667 Chr4 17672312 17672311 + RIREX_LTR 8828 0.0087 (19/2175) 0 * * Os_TE_370666 Chr4 17672043 17672042 - ORSgTEMT01601696 238 0.0066 (18/2729) 0 * * Os_TE_370640 Chr4 17661860 17661859 - RETROSAT4_LTR 13504 0.0003 (1/2956) 0 * * Os_TE_370631 Chr4 17661363 17661364 + RIREX_LTR 8828 0.0003 (1/2955) 0 * Os_TE_370630 Os_TE_370630 Chr4 17661359 17661358 - RIREX_LTR 8828 0.0003 (1/2942) 0 * Os_TE_370631 Os_TE_370619 Chr4 17653829 17653828 - ENSPM_OS 9843 0.0004 (1/2842) 0 * * Os_TE_370586 Chr4 17641722 17641723 - OSTE14 885 0.0060 (18/2991) 0 * Os_TE_370585 Os_TE_370585 Chr4 17641720 17641719 - OSTE14 885 0.0047 (14/2988) 0 * Os_TE_370586 Os_TE_370584 Chr4 17641500 17641499 - CACTA-G1 797 0.0007 (2/2990) 0 * * Os_TE_370559 Chr4 17627642 17627641 + EnSpm-10_OS 11265 0.0067 (20/2987) 0 * * Os_TE_370554 Chr4 17625016 17625017 - RIRE3_LTR 12054 0.0095 (28/2953) 0 * Os_TE_370553 Os_TE_370553 Chr4 17625012 17625011 + RIRE3_LTR 12054 0.0081 (24/2947) 0 * Os_TE_370554 Os_TE_370546 Chr4 17610351 17621926 + OSHOOTER 11544 0.8542 (2536/2969) 1 Intact * Os_TE_370542 Chr4 17608925 17608924 - RIREX_LTR 8828 0.0007 (2/2989) 0 * * Os_TE_370541 Chr4 17608833 17608834 - COPIA1-LTR_OS 9292 0.0027 (8/2972) 0 * * Os_TE_370540 Chr4 17608702 17608703 + SPMLIKE 10989 0.0328 (98/2988) 0 * Os_TE_370539 Os_TE_370539 Chr4 17608700 17608699 - ORSgTETN00200001 10994 0.0314 (94/2989) 0 * Os_TE_370540 Os_TE_370536 Chr4 17608647 17608646 + OSHOOTER 11544 0.0649 (194/2989) 0 * * Os_TE_370535 Chr4 17608496 17608497 + SZ-58LTR 114 0.0013 (4/2989) 0 * Os_TE_370534 Os_TE_370534 Chr4 17608492 17608491 - SZ-58LTR 114 0.0027 (8/2989) 0 * Os_TE_370535 Os_TE_370532 Chr4 17607617 17607616 + RIREX_LTR 8828 0.0030 (9/2981) 0 * * Os_TE_370502 Chr4 17591279 17591280 + ORSiTERTOOT00226 792 0.0014 (4/2934) 0 * * Os_TE_370491 Chr4 17586736 17586737 - ORSgTEMT00100582 334 0.0061 (18/2938) 0 * * Os_TE_370481 Chr4 17584102 17584103 + ORSiTERTOOT00074 4935 0.0761 (223/2932) 0 * Os_TE_370480 Os_TE_370480 Chr4 17584098 17584097 - ORSiTERTOOT00074 4935 0.0744 (218/2929) 0 * Os_TE_370481 Os_TE_370475 Chr4 17583270 17583269 - ORSgTETNOOT01607 258 0.0014 (4/2799) 0 * * Os_TE_370474 Chr4 17583241 17583242 - NDNA1TNA_OS 334 0.0004 (1/2654) 0 * * Os_TE_370473 Chr4 17583179 17583178 + DITAILA 257 0.0388 (109/2806) 0 * * Os_TE_370472 Chr4 17582418 17582419 - ORSgTETN00200001 10994 0.0004 (1/2735) 0 * Os_TE_370471 Os_TE_370471 Chr4 17582416 17582415 + SPMLIKE 10989 0.0004 (1/2646) 0 * Os_TE_370472 Os_TE_370467 Chr4 17580647 17580648 + RIREX_LTR 8828 0.0013 (4/2978) 0 * Os_TE_370466 Os_TE_370466 Chr4 17580643 17580642 - RIREX_LTR 8828 0.0013 (4/2973) 0 * Os_TE_370467 Os_TE_370463 Chr4 17580129 17578898 + CACTA-B 1103 0.8964 (2657/2964) 1 Intact Os_TE_370462 Os_TE_370462 Chr4 17578901 17580126 - CACTA-H 1152 0.8980 (2676/2980) 1 Intact Os_TE_370463 Os_TE_370461 Chr4 17578699 17578700 + DS-RICE3N 525 0.0024 (7/2978) 0 * * Os_TE_370449 Chr4 17575064 17575063 - TRUNCATOR2_LTR 2904 0.0020 (6/2949) 0 * * Os_TE_370447 Chr4 17574748 17574749 - TRUNCATOR 2918 0.0029 (8/2723) 0 * * Os_TE_370443 Chr4 17572293 17572294 - SZ-35LTR 3853 0.0264 (78/2959) 0 * * Os_TE_370439 Chr4 17569991 17569992 + COPI2_LTR 4733 0.0007 (2/2982) 0 * Os_TE_370438 Os_TE_370438 Chr4 17569987 17569986 - COPI2_LTR 4733 0.0007 (2/2980) 0 * Os_TE_370439 Os_TE_370435 Chr4 17568212 17568211 + BAJIELTR 4500 0.0727 (217/2985) 0 * * Os_TE_370434 Chr4 17567657 17567658 - ATLANTYS-LTR_OS 13740 0.0027 (8/2985) 0 * Os_TE_370433 Os_TE_370433 Chr4 17567653 17567652 + ATLANTYS-LTR_OS 13740 0.0030 (9/2984) 0 * Os_TE_370434 Os_TE_370429 Chr4 17564245 17564244 - TNR2A 152 0.0010 (3/2978) 0 * * Os_TE_370422 Chr4 17560247 17560471 - STOWAWAY43_OS 233 0.7060 (2017/2857) 1 Intact * Os_TE_370388 Chr4 17550075 17550076 - RIRE2_LTR 11306 0.0007 (1/1403) 0 * * Os_TE_370331 Chr4 17515657 17515777 - ZM13-2_OS 108 0.7661 (1837/2398) 1 Intact * Os_TE_370327 Chr4 17514836 17514835 + EnSpm-10_OS 11265 0.0005 (1/2012) 0 * * Os_TE_370292 Chr4 17502879 17514248 - ORSgTETN00200001 10994 0.6041 (1671/2766) 1 Intact * Os_TE_370287 Chr4 17502127 17501799 + ORSgTEMT00100694 349 0.6917 (1990/2877) 1 Intact * Os_TE_370272 Chr4 17499539 17499540 - ENSPM4_OS 11610 0.0015 (3/2042) 0 * * Os_TE_370271 Chr4 17499477 17499478 - COPIA2-LTR_OS 6433 0.0005 (1/2042) 0 * Os_TE_370270 Os_TE_370270 Chr4 17499473 17499472 + COPIA2-LTR_OS 6433 0.0005 (1/2086) 0 * Os_TE_370271 Os_TE_370269 Chr4 17499316 17499317 + RIRE3_LTR 12054 0.0313 (93/2968) 0 * * Os_TE_370268 Chr4 17498830 17498485 - OLO24 345 0.8970 (1811/2019) 1 Intact * Os_TE_370265 Chr4 17498037 17498036 - DS-RICE4N 715 0.1097 (222/2023) 0 * * Os_TE_370248 Chr4 17488580 17488581 - ORSgTEMT01602404 253 0.3472 (1015/2923) 0 * * Os_TE_370244 Chr4 17488300 17488460 + UNIQUE 158 0.6713 (1967/2930) 1 Intact * Os_TE_370236 Chr4 17485104 17485105 - TRUNCATOR 2918 0.0061 (18/2938) 0 * * Os_TE_370202 Chr4 17478100 17478101 - ORSgTERT00201216 11284 0.0636 (184/2893) 0 * Os_TE_370201 Os_TE_370201 Chr4 17478096 17478095 - RIRE2_LTR 11306 0.0666 (195/2926) 0 * Os_TE_370202 Os_TE_370198 Chr4 17476904 17476905 + RIREX_LTR 8828 0.0010 (3/2939) 0 * * Os_TE_370196 Chr4 17475663 17475664 + RETRO2_LTR 12874 0.0014 (4/2927) 0 * * Os_TE_370194 Chr4 17475540 17475541 + TRUNCATOR 2918 0.0007 (2/2935) 0 * * Os_TE_370187 Chr4 17467933 17467934 + ORSgTETNOOT01791 245 0.0128 (37/2900) 0 * * Os_TE_370182 Chr4 17467058 17467059 - ORSgTEMT00501987 127 0.0126 (37/2933) 0 * Os_TE_370181 Os_TE_370181 Chr4 17467056 17467055 - ORSgTEMT00502214 125 0.0133 (39/2938) 0 * Os_TE_370182 Os_TE_370174 Chr4 17461929 17461930 - COPI2_LTR 4733 0.0003 (1/2930) 0 * Os_TE_370173 Os_TE_370173 Chr4 17461925 17461924 + COPI2_LTR 4733 0.0003 (1/2925) 0 * Os_TE_370174 Os_TE_370170 Chr4 17461244 17461481 - ORSgTEMT01600520 239 0.8765 (2562/2923) 1 Intact * Os_TE_370158 Chr4 17455913 17460993 + CPSC3_LTR 5175 0.8799 (2585/2938) 1 Intact * Os_TE_370155 Chr4 17455124 17446018 + SPMLIKE 10989 0.8728 (2387/2735) 1 Intact Os_TE_370144 Os_TE_370144 Chr4 17446018 17455124 - ORSgTETN00200001 10994 0.8817 (2557/2900) 1 Intact Os_TE_370155 Os_TE_370141 Chr4 17445720 17445891 + SZ-55_LTR 10318 0.8796 (2579/2932) 1 Intact * Os_TE_370138 Chr4 17445091 17445092 - TRUNCATOR2_LTR 2904 0.0012 (3/2590) 0 * * Os_TE_370134 Chr4 17439941 17439942 + RIREX_LTR 8828 0.0056 (16/2842) 0 * Os_TE_370133 Os_TE_370133 Chr4 17439937 17439936 - RIREX_LTR 8828 0.0051 (15/2935) 0 * Os_TE_370134 Os_TE_370130 Chr4 17438005 17438004 - SEVERIN-2 1952 0.1284 (376/2929) 0 * * Os_TE_370128 Chr4 17437853 17429876 + GYPSY1-LTR_OS 8900 0.8838 (2585/2925) 1 Intact * Os_TE_370110 Chr4 17429530 17436670 - GYPSY-B_LTR 7068 0.8796 (2579/2932) 1 Intact * Os_TE_370105 Chr4 17427414 17427413 + SPMLIKE 10989 0.0033 (9/2695) 0 * * Os_TE_370101 Chr4 17426655 17426654 + AMYLTP 383 0.0026 (7/2646) 0 * * Os_TE_370097 Chr4 17423899 17423752 - STOWAWAY1_OS 149 0.8785 (2596/2955) 1 Intact Os_TE_370096 Os_TE_370096 Chr4 17423750 17423901 + ORSgTEMT01701591 154 0.8958 (2614/2918) 1 Intact Os_TE_370097 Os_TE_370095 Chr4 17423245 17423246 + ORSgTEMT00101674 340 0.1280 (381/2977) 0 * * Os_TE_370088 Chr4 17421053 17421052 - TRUNCATOR 2918 0.0042 (12/2883) 0 * Os_TE_370087 Os_TE_370087 Chr4 17421052 17421053 + TRUNCATOR 2918 0.0052 (15/2874) 0 * Os_TE_370088 Os_TE_370082 Chr4 17420226 17420227 - ORSgTEMT01601493 303 0.0161 (45/2797) 0 * Os_TE_370081 Os_TE_370081 Chr4 17420225 17420224 + ORSgTEMT01601983 238 0.0144 (40/2786) 0 * Os_TE_370082 Os_TE_370080 Chr4 17418874 17418875 + OLO24 345 0.0053 (16/2991) 0 * Os_TE_370079 Os_TE_370079 Chr4 17418872 17418871 - OLO24 345 0.0050 (15/2988) 0 * Os_TE_370080 Os_TE_370078 Chr4 17418683 17418682 - ORSgTEMT00900099 250 0.0054 (16/2975) 0 * * Os_TE_370076 Chr4 17418649 17418650 + RIREX_LTR 8828 0.0050 (15/2983) 0 * Os_TE_370075 Os_TE_370075 Chr4 17418645 17418644 - RIREX_LTR 8828 0.0050 (15/2986) 0 * Os_TE_370076 Os_TE_370067 Chr4 17417431 17417432 - RIRE3_LTR 12054 0.0473 (133/2814) 0 * * Os_TE_370066 Chr4 17417064 17417063 - ORSgTEMT01601432 239 0.0053 (15/2822) 0 * Os_TE_370065 Os_TE_370065 Chr4 17417061 17417062 - ORSgTEMT01600152 226 0.0060 (17/2821) 0 * Os_TE_370066 Os_TE_370019 Chr4 17397284 17397285 - TRUNCATOR 2918 0.0029 (8/2805) 0 * Os_TE_370018 Os_TE_370018 Chr4 17397277 17397276 + TRUNCATOR 2918 0.0029 (8/2805) 0 * Os_TE_370019 Os_TE_370010 Chr4 17393032 17393031 - MERMITE-17 2759 0.0011 (3/2764) 0 * Os_TE_370009 Os_TE_370009 Chr4 17393020 17393021 + MERMITE18D 1491 0.0636 (186/2925) 0 * Os_TE_370010 Os_TE_369994 Chr4 17385344 17385343 - ORSgTEMT01602467 227 0.0483 (144/2982) 0 * * Os_TE_369979 Chr4 17370842 17370841 - SZ-50_LTR 11691 0.0204 (61/2986) 0 * * Os_TE_369967 Chr4 17360774 17360775 + SPMLIKE 10989 0.0007 (2/2673) 0 * * Os_TE_369905 Chr4 17324510 17324511 - RIREX_LTR 8828 0.0004 (1/2756) 0 * Os_TE_369904 Os_TE_369904 Chr4 17324506 17324505 + RIREX_LTR 8828 0.0004 (1/2757) 0 * Os_TE_369905 Os_TE_369891 Chr4 17323032 17323033 + ORSiTERTOOT00226 792 0.0003 (1/2934) 0 * Os_TE_369890 Os_TE_369890 Chr4 17323028 17323027 - SZ-22_LTR 4403 0.0004 (1/2789) 0 * Os_TE_369891 Os_TE_369874 Chr4 17318976 17318975 + RIRE2_LTR 11306 0.0007 (2/2980) 0 * * Os_TE_369800 Chr4 17274814 17274815 - RETROSAT2LTRA 3112 0.0003 (1/2920) 0 * * Os_TE_369797 Chr4 17273254 17273253 + STOWAWAY50_OS 174 0.0694 (202/2912) 0 * * Os_TE_369788 Chr4 17265720 17265721 - OSTONOR1_LTR 6440 0.0007 (2/2974) 0 * Os_TE_369787 Os_TE_369787 Chr4 17265716 17265715 + OSTONOR1_LTR 6440 0.0007 (2/2982) 0 * Os_TE_369788 Os_TE_369784 Chr4 17265357 17265358 + ORSgTEMT01601934 207 0.0856 (254/2968) 0 * * Os_TE_369769 Chr4 17261593 17261592 - ORSgTEMT01601432 239 0.0003 (1/2937) 0 * * Os_TE_369768 Chr4 17261492 17261491 - YOUREN 286 0.1058 (310/2930) 0 * * Os_TE_369767 Chr4 17261394 17261145 - ORSgTEMT00901723 248 0.8825 (2606/2953) 1 Intact * Os_TE_369754 Chr4 17260900 17261147 + DITAILA 257 0.8921 (2647/2967) 1 Intact * Os_TE_369753 Chr4 17260624 17260625 - RIRE2_LTR 11306 0.0004 (1/2641) 0 * Os_TE_369752 Os_TE_369752 Chr4 17260620 17260619 + RIREX_LTR 8828 0.0004 (1/2649) 0 * Os_TE_369753 Os_TE_369751 Chr4 17260617 17260618 + RIRE2_LTR 11306 0.0660 (194/2938) 0 * * Os_TE_369750 Chr4 17260122 17260123 - RETRO1_LTR 8314 0.0010 (3/2919) 0 * Os_TE_369749 Os_TE_369749 Chr4 17260118 17260117 + RETRO1_LTR 8314 0.0011 (3/2773) 0 * Os_TE_369750 Os_TE_369735 Chr4 17254062 17254063 + TRUNCATOR2_LTR 2904 0.0017 (5/2970) 0 * * Os_TE_369727 Chr4 17248461 17248462 + HARB-N1_OS 2589 0.0545 (162/2975) 0 * Os_TE_369726 Os_TE_369726 Chr4 17248459 17248458 - HARB-N1_OS 2589 0.0534 (159/2979) 0 * Os_TE_369727 Os_TE_369725 Chr4 17247989 17247990 + MPING 430 0.0017 (5/2986) 0 * Os_TE_369724 Os_TE_369724 Chr4 17247987 17247986 - MPING 430 0.0017 (5/2983) 0 * Os_TE_369725 Os_TE_369723 Chr4 17246457 17246456 + SEVERIN-2 1952 0.0030 (8/2633) 0 * * Os_TE_369680 Chr4 17229887 17229886 - RIRE2_LTR 11306 0.0007 (2/2986) 0 * * Os_TE_369660 Chr4 17225209 17225210 - ORSiTERTOOT00191 812 0.0007 (2/2744) 0 * * Os_TE_369648 Chr4 17222131 17222132 + EnSpm-13_OS 11171 0.0077 (23/2976) 0 * * Os_TE_369640 Chr4 17219730 17219729 - YOUREN 286 0.0003 (1/2992) 0 * * Os_TE_369610 Chr4 17212127 17212126 + SEVERIN-2 1952 0.0027 (8/2924) 0 * * Os_TE_369551 Chr4 17192118 17192119 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_369550 Os_TE_369550 Chr4 17192114 17192113 + COPIA2-LTR_OS 6433 0.0003 (1/2984) 0 * Os_TE_369551 Os_TE_369525 Chr4 17180643 17180642 + RIREX_LTR 8828 0.0735 (220/2993) 0 * * Os_TE_369521 Chr4 17177946 17177945 + TAMI2 254 0.0007 (2/2879) 0 * * Os_TE_369508 Chr4 17172030 17172031 + ORSiCMCM00100019 2717 0.0003 (1/2897) 0 * * Os_TE_369494 Chr4 17168481 17168480 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * * Os_TE_369493 Chr4 17168039 17168038 + MUDRN1_OS 764 0.0139 (41/2955) 0 * * Os_TE_369429 Chr4 17135146 17135147 + COPIA2-LTR_OS 6433 0.0003 (1/2940) 0 * * Os_TE_369423 Chr4 17134492 17134493 + RIREX_LTR 8828 0.0003 (1/2949) 0 * * Os_TE_369418 Chr4 17131957 17131958 + TRUNCATOR2_LTR 2904 0.0058 (17/2945) 0 * * Os_TE_369416 Chr4 17131349 17131350 + COPIA1-LTR_OS 9292 0.0122 (36/2943) 0 * * Os_TE_369365 Chr4 17106958 17106957 - SZ-5LTR 1223 0.0024 (7/2920) 0 * * Os_TE_369357 Chr4 17100953 17100954 + CPSC2_LTR 5202 0.0004 (1/2751) 0 * Os_TE_369356 Os_TE_369356 Chr4 17100949 17100948 - CPSC2_LTR 5202 0.0004 (1/2764) 0 * Os_TE_369357 Os_TE_369351 Chr4 17099163 17099162 - ORMOSIA 482 0.0698 (183/2622) 0 * * Os_TE_369344 Chr4 17098119 17098120 + ENSPM4_OS 11610 0.0014 (4/2829) 0 * * Os_TE_369342 Chr4 17097636 17097635 + ORSgTEMT01601525 239 0.0020 (6/2937) 0 * Os_TE_369341 Os_TE_369341 Chr4 17097635 17097636 + ORSgTEMT01600527 241 0.0027 (8/2935) 0 * Os_TE_369342 Os_TE_369339 Chr4 17095922 17095921 + TRUNCATOR2_LTR 2904 0.0089 (25/2822) 0 * * Os_TE_369320 Chr4 17088305 17088304 - RETROSAT2LTR 12796 0.0034 (5/1467) 0 * * Os_TE_369319 Chr4 17088294 17088293 + RETROSAT2LTRA 3112 0.0010 (2/1927) 0 * * Os_TE_369315 Chr4 17087976 17087977 + RIREX_LTR 8828 0.0004 (1/2592) 0 * Os_TE_369314 Os_TE_369314 Chr4 17087972 17087971 - RIREX_LTR 8828 0.0004 (1/2587) 0 * Os_TE_369315 Os_TE_369307 Chr4 17085799 17085800 + EXPLORER 210 0.0014 (4/2821) 0 * * Os_TE_369299 Chr4 17084045 17084044 - SZ-9LTR 965 0.0573 (170/2965) 0 * * Os_TE_369293 Chr4 17079907 17079908 + RPO_OS 1983 0.0015 (4/2587) 0 * * Os_TE_369289 Chr4 17078658 17078657 - ORSgTEMT02400246 177 0.0071 (20/2824) 0 * * Os_TE_369278 Chr4 17074976 17074975 + GYPSY-A_LTR 8951 0.0504 (144/2858) 0 * * Os_TE_369270 Chr4 17073945 17073946 - RIREX_LTR 8828 0.0003 (1/2958) 0 * Os_TE_369269 Os_TE_369269 Chr4 17073941 17073940 + RIREX_LTR 8828 0.0003 (1/2968) 0 * Os_TE_369270 Os_TE_369241 Chr4 17054755 17054754 - ORSgTETNOOT00754 253 0.0003 (1/2995) 0 * * Os_TE_369221 Chr4 17048984 17048983 + RETRO2_LTR 12874 0.0003 (1/2987) 0 * * Os_TE_369217 Chr4 17045014 17045015 + COPIA2-LTR_OS 6433 0.0013 (4/2996) 0 * Os_TE_369216 Os_TE_369216 Chr4 17045010 17045009 - COPIA2-LTR_OS 6433 0.0013 (4/2996) 0 * Os_TE_369217 Os_TE_369213 Chr4 17044138 17044139 - TELIA 141 0.0007 (2/2987) 0 * Os_TE_369212 Os_TE_369212 Chr4 17044130 17044129 + TELIA 141 0.0007 (2/2987) 0 * Os_TE_369213 Os_TE_369200 Chr4 17041988 17041989 - ORSgTETN00200001 10994 0.0350 (104/2969) 0 * Os_TE_369199 Os_TE_369199 Chr4 17041986 17041985 + SPMLIKE 10989 0.0409 (122/2984) 0 * Os_TE_369200 Os_TE_369164 Chr4 17030761 17030762 + GYPSY-A_LTR 8951 0.0070 (20/2872) 0 * Os_TE_369163 Os_TE_369163 Chr4 17030757 17030756 - SZ-40LTR 2465 0.0080 (23/2877) 0 * Os_TE_369164 Os_TE_369101 Chr4 17013086 17013087 - RIREX_LTR 8828 0.0003 (1/2927) 0 * * Os_TE_369075 Chr4 16996511 16996512 + ORSiTERTOOT00226 792 0.0007 (2/2978) 0 * Os_TE_369074 Os_TE_369074 Chr4 16996507 16996506 - SZ-22_LTR 4403 0.0007 (2/2982) 0 * Os_TE_369075 Os_TE_369055 Chr4 16984986 16984987 + RETRO2A_LTR 12895 0.0007 (2/2939) 0 * * Os_TE_369037 Chr4 16978971 16978972 + ORSiTERTOOT00028 8600 0.0003 (1/2992) 0 * Os_TE_369036 Os_TE_369036 Chr4 16978967 16978966 - TRUNCATOR2_LTR 2904 0.0003 (1/2995) 0 * Os_TE_369037 Os_TE_369007 Chr4 16968216 16968217 + ORSgTEMT01701871 163 0.0522 (156/2991) 0 * * Os_TE_369000 Chr4 16966418 16966419 + ORSgTEMT01900006 305 0.0389 (114/2934) 0 * * Os_TE_368991 Chr4 16962020 16962019 + RIREX_LTR 8828 0.0014 (4/2949) 0 * * Os_TE_368986 Chr4 16960403 16960404 - ORSgTEMT01701112 154 0.0027 (8/2992) 0 * Os_TE_368985 Os_TE_368985 Chr4 16960401 16960400 - ORSgTEMT01700507 154 0.0023 (7/2988) 0 * Os_TE_368986 Os_TE_368947 Chr4 16947506 16947505 - MPING 430 0.0128 (38/2959) 0 * * Os_TE_368923 Chr4 16944289 16944288 + ORSgTEMT00501027 149 0.0569 (165/2901) 0 * * Os_TE_368894 Chr4 16940125 16940124 + Cassandra_OS-LTR 764 0.0027 (8/2931) 0 * * Os_TE_368887 Chr4 16939159 16939160 - SZ-22_LTR 4403 0.0004 (1/2629) 0 * Os_TE_368886 Os_TE_368886 Chr4 16939155 16939154 + ORSiTERTOOT00226 792 0.0004 (1/2579) 0 * Os_TE_368887 Os_TE_368878 Chr4 16935941 16935942 - RIRE2_LTR 11306 0.0003 (1/2946) 0 * * Os_TE_368873 Chr4 16934381 16934382 - ORSgTERT00201216 11284 0.0007 (2/2709) 0 * * Os_TE_368865 Chr4 16931211 16931212 - RIRE2_LTR 11306 0.0007 (2/2914) 0 * Os_TE_368864 Os_TE_368864 Chr4 16931207 16931206 + RIRE2_LTR 11306 0.0007 (2/2911) 0 * Os_TE_368865 Os_TE_368863 Chr4 16931019 16931020 - OLO24 345 0.0560 (160/2858) 0 * * Os_TE_368852 Chr4 16917161 16917162 + GAIJIN 147 0.0003 (1/2933) 0 * * Os_TE_368805 Chr4 16897717 16897716 - RETROSAT2LTR 12796 0.0059 (14/2363) 0 * * Os_TE_368765 Chr4 16880983 16880984 - RIRE2_LTR 11306 0.0043 (12/2815) 0 * Os_TE_368764 Os_TE_368764 Chr4 16880979 16880978 - ORSgTERT00201216 11284 0.0047 (14/2951) 0 * Os_TE_368765 Os_TE_368763 Chr4 16880870 16880869 - ORSgTEMT01601834 234 0.0546 (161/2950) 0 * * Os_TE_368762 Chr4 16880867 16880868 + ORSgTEMT01601934 207 0.0556 (164/2948) 0 * Os_TE_368761 Os_TE_368761 Chr4 16880864 16880863 + ORSgTEMT01600288 233 0.0546 (161/2951) 0 * Os_TE_368762 Os_TE_368757 Chr4 16878921 16878922 - SZ-22_LTR 4403 0.0010 (3/2983) 0 * * Os_TE_368722 Chr4 16866684 16866683 + ORSiTERTOOT00296 5553 0.0003 (1/2985) 0 * * Os_TE_368638 Chr4 16821339 16821340 - RETROSAT2LTR 12796 0.0014 (4/2905) 0 * * Os_TE_368632 Chr4 16816668 16816669 + COPI2_LTR 4733 0.0003 (1/2985) 0 * Os_TE_368631 Os_TE_368631 Chr4 16816664 16816663 - COPI2_LTR 4733 0.0004 (1/2835) 0 * Os_TE_368632 Os_TE_368627 Chr4 16813852 16813851 + NDNA1TNA_OS 334 0.0027 (8/2999) 0 * Os_TE_368626 Os_TE_368626 Chr4 16813850 16813851 + ORSgTEMT00101674 340 0.0020 (6/2997) 0 * Os_TE_368627 Os_TE_368625 Chr4 16813536 16813537 - MuDR3_OS 8604 0.0023 (7/2985) 0 * Os_TE_368624 Os_TE_368624 Chr4 16813527 16813526 - MuDR3_OS 8604 0.0027 (8/2995) 0 * Os_TE_368625 Os_TE_368623 Chr4 16813174 16813175 - MERMITED 1572 0.0023 (7/2994) 0 * Os_TE_368622 Os_TE_368622 Chr4 16813172 16813171 - MERMITED 1572 0.0023 (7/2993) 0 * Os_TE_368623 Os_TE_368617 Chr4 16811362 16811363 - COPIA2-LTR_OS 6433 0.0014 (4/2841) 0 * Os_TE_368616 Os_TE_368616 Chr4 16811358 16811357 + COPIA2-LTR_OS 6433 0.0014 (4/2851) 0 * Os_TE_368617 Os_TE_368608 Chr4 16810570 16810571 - MuDR2_OS 6770 0.0004 (1/2515) 0 * * Os_TE_368598 Chr4 16809237 16809236 - F524 291 0.0014 (4/2905) 0 * * Os_TE_368592 Chr4 16807079 16807080 + ORSgTEMT00901138 254 0.0538 (161/2990) 0 * * Os_TE_368575 Chr4 16799955 16799956 - INDITTO 263 0.0007 (2/2984) 0 * * Os_TE_368557 Chr4 16792221 16792220 + TREP219 104 0.0493 (146/2959) 0 * * Os_TE_368548 Chr4 16790441 16790442 + ORSgTEMT01601122 212 0.0190 (53/2794) 0 * * Os_TE_368471 Chr4 16760062 16760063 - SC-7_LTR 4431 0.0013 (4/2976) 0 * Os_TE_368470 Os_TE_368470 Chr4 16760058 16760057 + SC-7_LTR 4431 0.0017 (5/2971) 0 * Os_TE_368471 Os_TE_368456 Chr4 16757557 16757558 - SC-8_LTR 4951 0.0007 (2/2985) 0 * Os_TE_368455 Os_TE_368455 Chr4 16757553 16757552 + SC-8_LTR 4951 0.0007 (2/2985) 0 * Os_TE_368456 Os_TE_368425 Chr4 16746473 16746474 - COPI2_LTR 4733 0.0003 (1/2971) 0 * * Os_TE_368421 Chr4 16744736 16744737 + ORSgTEMT00100531 325 0.0003 (1/2937) 0 * * Os_TE_368406 Chr4 16734327 16734328 - INDITTO 263 0.0010 (3/2980) 0 * Os_TE_368405 Os_TE_368405 Chr4 16734325 16734324 + INDITTO 263 0.0010 (3/2981) 0 * Os_TE_368406 Os_TE_368400 Chr4 16730733 16730732 - STOWAWAY51_OS 246 0.0003 (1/2990) 0 * Os_TE_368399 Os_TE_368399 Chr4 16730727 16730728 + STOWAWAY51_OS 246 0.0003 (1/2992) 0 * Os_TE_368400 Os_TE_368380 Chr4 16726750 16726751 + ORSgTEMT01602776 232 0.0003 (1/2926) 0 * Os_TE_368379 Os_TE_368379 Chr4 16726741 16726740 + MUDRN5_OS 374 0.0003 (1/2930) 0 * Os_TE_368380 Os_TE_368378 Chr4 16726740 16726741 + ORSgTEMT00700017 386 0.0003 (1/2932) 0 * * Os_TE_368346 Chr4 16718527 16718526 + NDNA1TNA_OS 334 0.0004 (1/2803) 0 * Os_TE_368345 Os_TE_368345 Chr4 16718524 16718525 - NDNA1TNA_OS 334 0.0004 (1/2801) 0 * Os_TE_368346 Os_TE_368344 Chr4 16718448 16718449 - MERMITE18A 532 0.0004 (1/2714) 0 * * Os_TE_368319 Chr4 16714854 16714853 + AMYLTP 383 0.0133 (39/2932) 0 * * Os_TE_368299 Chr4 16708793 16708794 - RIRE2_LTR 11306 0.0003 (1/2988) 0 * * Os_TE_368296 Chr4 16707886 16707887 + SEVERIN-2 1952 0.0023 (7/2979) 0 * * Os_TE_368294 Chr4 16704603 16704604 - SC-3_LTR 5748 0.0003 (1/2993) 0 * Os_TE_368293 Os_TE_368293 Chr4 16704599 16704598 + ORSiTERTOOT00296 5553 0.0003 (1/2993) 0 * Os_TE_368294 Os_TE_368291 Chr4 16703892 16703891 - SEVERIN-2 1952 0.0003 (1/2972) 0 * * Os_TE_368285 Chr4 16699949 16699948 + MERMITEB 1610 0.0003 (1/2886) 0 * * Os_TE_368283 Chr4 16699819 16699820 - F569 228 0.0004 (1/2802) 0 * Os_TE_368282 Os_TE_368282 Chr4 16699817 16699816 + F569 228 0.0003 (1/2991) 0 * Os_TE_368283 Os_TE_368280 Chr4 16698090 16698091 + STOWAWAY45_OS 266 0.3504 (1015/2897) 0 * * Os_TE_368264 Chr4 16693771 16693651 + STOWAWAY50_OS 174 0.6476 (1926/2974) 1 Intact * Os_TE_368256 Chr4 16685087 16685088 - MERMITE18B 1306 0.3608 (1055/2924) 0 * * Os_TE_368253 Chr4 16684652 16684651 - MIDWAY 985 0.0027 (8/2946) 0 * * Os_TE_368251 Chr4 16684041 16683300 - CLOUD 734 0.6533 (1871/2864) 1 Intact Os_TE_368249 Os_TE_368249 Chr4 16683299 16684041 - CLOUD 734 0.6457 (1883/2916) 1 Intact Os_TE_368251 Os_TE_368246 Chr4 16682226 16682225 + ORSgTEMT00100272 356 0.0007 (2/2918) 0 * Os_TE_368245 Os_TE_368245 Chr4 16682225 16682226 + NDNA1TNA_OS 334 0.0010 (2/1992) 0 * Os_TE_368246 Os_TE_368231 Chr4 16674964 16675386 - WANDERER 232 0.6652 (1850/2781) 1 Intact * Os_TE_368227 Chr4 16674749 16674895 + ORSgTEMT00500361 192 0.6718 (1863/2773) 1 Intact * Os_TE_368223 Chr4 16674074 16674075 - SINE16_OS 116 0.3800 (1119/2945) 0 * * Os_TE_368222 Chr4 16673957 16673730 + ORSgTETNOOT01219 231 0.6545 (1919/2932) 1 Intact Os_TE_368221 Os_TE_368221 Chr4 16673726 16673958 + ORSgTETNOOT00908 242 0.6586 (1923/2920) 1 Intact Os_TE_368222 Os_TE_368215 Chr4 16672538 16672539 - ORSgTEMT00501204 149 0.3527 (1025/2906) 0 * * Os_TE_368211 Chr4 16670935 16670936 + RETRO2A_LTR 12895 0.0003 (1/2993) 0 * * Os_TE_368202 Chr4 16661048 16661049 - SZ-44LTR 1408 0.3906 (1164/2980) 0 * Os_TE_368201 Os_TE_368201 Chr4 16661044 16661043 + SZ-44LTR 1408 0.3832 (1134/2959) 0 * Os_TE_368202 Os_TE_368194 Chr4 16660184 16660185 + RIREX_LTR 8828 0.0114 (34/2987) 0 * Os_TE_368193 Os_TE_368193 Chr4 16660180 16660179 - RIREX_LTR 8828 0.0117 (35/2985) 0 * Os_TE_368194 Os_TE_368162 Chr4 16652376 16652377 - RIRE2_LTR 11306 0.0030 (9/2996) 0 * Os_TE_368161 Os_TE_368161 Chr4 16652372 16652371 + RIRE2_LTR 11306 0.0033 (10/2996) 0 * Os_TE_368162 Os_TE_368158 Chr4 16651076 16651075 + ORSgTEMT01702004 154 0.3785 (1123/2967) 0 * Os_TE_368157 Os_TE_368157 Chr4 16651075 16651076 + STOWAWAY1_OS 149 0.3761 (1107/2943) 0 * Os_TE_368158 Os_TE_368148 Chr4 16644462 16644667 + ORSgTEMT01400032 215 0.6198 (1842/2972) 1 Intact * Os_TE_368147 Chr4 16644314 16644313 + Cassandra_OS-LTR 764 0.0027 (8/2967) 0 * * Os_TE_368135 Chr4 16638046 16638047 + CASTAWAY 364 0.0043 (13/2994) 0 * Os_TE_368134 Os_TE_368134 Chr4 16638044 16638043 - ORSgTEMT00600085 364 0.0047 (14/2993) 0 * Os_TE_368135 Os_TE_368115 Chr4 16633808 16633591 - ORSgTEMT02400246 177 0.6308 (1878/2977) 1 Intact Os_TE_368114 Os_TE_368114 Chr4 16633583 16633806 + ORSgTEMT02400041 225 0.6340 (1878/2962) 1 Intact Os_TE_368115 Os_TE_368111 Chr4 16631434 16631435 + SETARIA2 1142 0.0031 (9/2877) 0 * * Os_TE_368108 Chr4 16630035 16630034 + EnSpm-13_OS 11171 0.0003 (1/2910) 0 * * Os_TE_368097 Chr4 16625150 16625151 - CACTA-G1 797 0.0048 (14/2937) 0 * Os_TE_368096 Os_TE_368096 Chr4 16625148 16625147 + CACTA-G1 797 0.0054 (16/2951) 0 * Os_TE_368097 Os_TE_368088 Chr4 16621478 16621479 - ORSgTERT00200351 477 0.0003 (1/2961) 0 * * Os_TE_368074 Chr4 16611744 16611745 + RETROSAT4_LTR 13504 0.0044 (13/2948) 0 * * Os_TE_368062 Chr4 16599435 16599436 - TYPEU1 380 0.0020 (6/2979) 0 * * Os_TE_368060 Chr4 16599245 16599246 + SZ-9LTR 965 0.0099 (28/2821) 0 * Os_TE_368059 Os_TE_368059 Chr4 16599241 16599240 - SZ-9LTR 965 0.0128 (31/2423) 0 * Os_TE_368060 Os_TE_368024 Chr4 16590105 16590106 - NDNA1TNA_OS 334 0.0003 (1/2952) 0 * Os_TE_368023 Os_TE_368023 Chr4 16590103 16590102 + NDNA1TNA_OS 334 0.0003 (1/2966) 0 * Os_TE_368024 Os_TE_368019 Chr4 16587926 16587927 + SINE03_OS 360 0.2281 (472/2069) 0 * * Os_TE_368015 Chr4 16584440 16584441 + STOWAWAY36_OS 268 0.4985 (1490/2989) 0 * Os_TE_368014 Os_TE_368014 Chr4 16584439 16584438 - STOWAWAY36_OS 268 0.4972 (1486/2989) 0.07 * Os_TE_368015 Os_TE_368003 Chr4 16578183 16578182 - RIREX_LTR 8828 0.0105 (17/1616) 0 * * Os_TE_367997 Chr4 16577099 16577098 - ORSgTEMT01601208 238 0.0003 (1/2966) 0 * * Os_TE_367995 Chr4 16576987 16576318 + CLOUD-2 711 0.6014 (1560/2594) 1 Intact Os_TE_367994 Os_TE_367994 Chr4 16576315 16576987 + Mudr5_OS 5952 0.5518 (1577/2858) 1 Intact Os_TE_367995 Os_TE_367987 Chr4 16573326 16573325 + ORSgTEMT01601122 212 0.0084 (25/2976) 0 * Os_TE_367986 Os_TE_367986 Chr4 16573323 16573324 + ORSgTEMT01601122 212 0.0081 (24/2972) 0 * Os_TE_367987 Os_TE_367983 Chr4 16572734 16572733 + OSTONOR1_LTR 6440 0.0003 (1/2900) 0 * * Os_TE_367979 Chr4 16571859 16571860 - SZ-37_LTR 12001 0.0013 (4/2995) 0 * Os_TE_367978 Os_TE_367978 Chr4 16571855 16571854 + SZ-37_LTR 12001 0.0013 (4/2980) 0 * Os_TE_367979 Os_TE_367976 Chr4 16571054 16571055 + TNR2A 152 0.0013 (4/2980) 0 * * Os_TE_367968 Chr4 16563882 16563883 + ORSiTERTOOT00296 5553 0.0013 (4/2996) 0 * Os_TE_367967 Os_TE_367967 Chr4 16563878 16563877 - SC-3_LTR 5748 0.0013 (4/2994) 0 * Os_TE_367968 Os_TE_367966 Chr4 16561990 16561989 - MuDR4_OS 7610 0.0003 (1/2922) 0 * * Os_TE_367965 Chr4 16561978 16561977 + RMU3_OS 1117 0.0078 (23/2933) 0 * * Os_TE_367959 Chr4 16560681 16560682 - RIREX_LTR 8828 0.0007 (1/1522) 0 * Os_TE_367958 Os_TE_367958 Chr4 16560677 16560676 + RIREX_LTR 8828 0.0007 (1/1520) 0 * Os_TE_367959 Os_TE_367942 Chr4 16549977 16549978 + CLOUD-3 550 0.0972 (290/2984) 0 * * Os_TE_367940 Chr4 16549162 16549163 - SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_367939 Os_TE_367939 Chr4 16549158 16549157 + SC-8_LTR 4951 0.0003 (1/2993) 0 * Os_TE_367940 Os_TE_367937 Chr4 16545808 16545671 + ORSgTEMT01701663 106 0.5796 (1714/2957) 1 Intact Os_TE_367934 Os_TE_367934 Chr4 16545671 16545808 - ORSgTEMT01700299 212 0.5852 (1728/2953) 1 Intact Os_TE_367937 Os_TE_367931 Chr4 16545399 16545163 + ORSgTEMT01601122 212 0.5637 (1645/2918) 1 Intact * Os_TE_367927 Chr4 16540398 16540399 + ORSiTERTOOT00296 5553 0.0003 (1/2994) 0 * Os_TE_367926 Os_TE_367926 Chr4 16540394 16540393 - SC-3_LTR 5748 0.0003 (1/2993) 0 * Os_TE_367927 Os_TE_367916 Chr4 16535741 16535742 - MPING 430 0.0022 (6/2743) 0 * Os_TE_367915 Os_TE_367915 Chr4 16535739 16535738 + MPING 430 0.0022 (6/2756) 0 * Os_TE_367916 Os_TE_367914 Chr4 16535474 16535475 + ORSgTEMT01702268 154 0.0108 (30/2772) 0 * * Os_TE_367876 Chr4 16525607 16525608 - RIREX_LTR 8828 0.0007 (2/2972) 0 * Os_TE_367875 Os_TE_367875 Chr4 16525603 16525602 + RIREX_LTR 8828 0.0010 (3/2965) 0 * Os_TE_367876 Os_TE_367872 Chr4 16525065 16525066 + SPMLIKE 10989 0.0729 (216/2961) 0 * * Os_TE_367869 Chr4 16524773 16524772 + ORSgTEMT00901798 232 0.0088 (26/2969) 0 * * Os_TE_367863 Chr4 16523995 16523996 - COPIA2-LTR_OS 6433 0.0007 (2/2912) 0 * Os_TE_367862 Os_TE_367862 Chr4 16523991 16523990 + COPIA2-LTR_OS 6433 0.0003 (1/2924) 0 * Os_TE_367863 Os_TE_367854 Chr4 16522232 16522233 + ORSgTEMT00600120 364 0.0004 (1/2821) 0 * * Os_TE_367844 Chr4 16520032 16520033 + COPI2_LTR 4733 0.0003 (1/2978) 0 * Os_TE_367843 Os_TE_367843 Chr4 16520028 16520027 - COPI2_LTR 4733 0.0003 (1/2980) 0 * Os_TE_367844 Os_TE_367835 Chr4 16517560 16517561 - RETRO2_LTR 12874 0.0028 (8/2822) 0 * Os_TE_367834 Os_TE_367834 Chr4 16517556 16517555 + RETRO2_LTR 12874 0.0018 (5/2830) 0 * Os_TE_367835 Os_TE_367830 Chr4 16515942 16515943 + SZ-9LTR 965 0.0003 (1/2965) 0 * Os_TE_367829 Os_TE_367829 Chr4 16515938 16515937 - SZ-9LTR 965 0.0003 (1/2962) 0 * Os_TE_367830 Os_TE_367811 Chr4 16502363 16502364 + MuDR-5_OS 17471 0.7155 (2128/2974) 0 * Os_TE_367810 Os_TE_367810 Chr4 16502355 16502354 - MuDR-5_OS 17471 0.7104 (2100/2956) 0 * Os_TE_367811 Os_TE_367773 Chr4 16487961 16487962 + OLO24 345 0.0020 (6/2938) 0 * Os_TE_367772 Os_TE_367772 Chr4 16487959 16487958 - OLO24 345 0.0021 (6/2901) 0 * Os_TE_367773 Os_TE_367735 Chr4 16464042 16476550 - RETRO2_LTR 12874 0.1862 (557/2991) 1 Intact * Os_TE_367714 Chr4 16456776 16456775 - ORSgTETNOOT00053 263 0.0111 (33/2965) 0 * * Os_TE_367713 Chr4 16455766 16455767 + COPI2_LTR 4733 0.0007 (2/2998) 0 * Os_TE_367712 Os_TE_367712 Chr4 16455762 16455761 - COPI2_LTR 4733 0.0007 (2/2998) 0 * Os_TE_367713 Os_TE_367697 Chr4 16447370 16447371 + ORSgTEMT01400039 200 0.0141 (42/2975) 0 * * Os_TE_367689 Chr4 16446745 16446746 + COPI2_LTR 4733 0.0003 (1/2992) 0 * Os_TE_367688 Os_TE_367688 Chr4 16446741 16446740 - COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_367689 Os_TE_367672 Chr4 16443516 16443517 - RPO_OS 1983 0.0108 (32/2955) 0 * * Os_TE_367671 Chr4 16443352 16443353 - ORSgTERT00201216 11284 0.0091 (27/2982) 0 * * Os_TE_367605 Chr4 16419986 16419987 + COPIA2-LTR_OS 6433 0.0007 (2/2985) 0 * Os_TE_367604 Os_TE_367604 Chr4 16419982 16419981 - COPIA2-LTR_OS 6433 0.0007 (2/2982) 0 * Os_TE_367605 Os_TE_367602 Chr4 16418880 16418881 - ORMOSIA 482 0.0124 (37/2983) 0 * * Os_TE_367601 Chr4 16418512 16418513 + COPI2_LTR 4733 0.0010 (3/2973) 0 * Os_TE_367600 Os_TE_367600 Chr4 16418508 16418507 - COPI2_LTR 4733 0.0010 (3/2976) 0 * Os_TE_367601 Os_TE_367591 Chr4 16415312 16415313 + MuDR3_OS 8604 0.0098 (29/2973) 0 * * Os_TE_367561 Chr4 16405625 16405624 + MERMITEH 1307 0.0007 (2/2977) 0 * * Os_TE_367543 Chr4 16398657 16398658 + ORSgTETNOOT01219 231 0.0442 (131/2963) 0 * Os_TE_367542 Os_TE_367542 Chr4 16398649 16398648 + ORSgTETNOOT00908 242 0.0446 (132/2959) 0 * Os_TE_367543 Os_TE_367508 Chr4 16386038 16386039 - CACTA-Q 2268 0.0801 (234/2923) 0 * * Os_TE_367487 Chr4 16380055 16380056 - RIRE2_LTR 11306 0.0020 (6/2982) 0 * Os_TE_367486 Os_TE_367486 Chr4 16380051 16380050 - ORSgTERT00201216 11284 0.0020 (6/2979) 0 * Os_TE_367487 Os_TE_367435 Chr4 16367779 16367778 + ORSiTERTOOT00034 791 0.0034 (3/877) -1 * * Os_TE_367413 Chr4 16359402 16359401 - ORSgTERT00201216 11284 0.0950 (282/2968) 0 * * Os_TE_367407 Chr4 16357562 16357563 + RIREX_LTR 8828 0.0003 (1/2901) 0 * Os_TE_367406 Os_TE_367406 Chr4 16357558 16357557 - RIREX_LTR 8828 0.0003 (1/2986) 0 * Os_TE_367407 Os_TE_367395 Chr4 16351616 16351617 - ORSgTETNOOT01607 258 0.0004 (1/2758) 0 * * Os_TE_367390 Chr4 16344179 16344178 + ORSgTEMT00900230 250 0.0010 (2/1977) 0 * Os_TE_367389 Os_TE_367389 Chr4 16344175 16344176 - ORSgTEMT00901138 254 0.0007 (2/2980) 0 * Os_TE_367390 Os_TE_367295 Chr4 16296600 16296601 + Mudr5_OS 5952 0.3567 (1034/2899) 0 * Os_TE_367294 Os_TE_367294 Chr4 16296598 16296597 + Mudr5_OS 5952 0.3508 (1010/2879) 0 * Os_TE_367295 Os_TE_367288 Chr4 16294082 16294083 - RIREX_LTR 8828 0.0386 (112/2902) 0 * * Os_TE_367285 Chr4 16291891 16291890 - SINE03_OS 360 0.3634 (1083/2980) 0 * * Os_TE_367283 Chr4 16291272 16291271 + COPIA2-LTR_OS 6433 0.1138 (276/2425) 0 * * Os_TE_367282 Chr4 16291254 16291253 + RIRE3A_LTR 10580 0.0026 (6/2317) 0 * * Os_TE_367279 Chr4 16290473 16290472 - ORSgTEMT01602413 239 0.3528 (1035/2934) 0 * Os_TE_367278 Os_TE_367278 Chr4 16290470 16290471 + ORSgTEMT01602004 234 0.2826 (753/2665) 0 * Os_TE_367279 Os_TE_367277 Chr4 16290412 16290413 - RIRE3A_LTR 10580 0.0402 (119/2958) 0 * * Os_TE_367195 Chr4 16240403 16240402 - RIRE2_LTR 11306 0.0307 (67/2184) 0 * * Os_TE_367194 Chr4 16240240 16240241 - ORSiTETNOOT00200 3563 0.0416 (123/2958) 0 * Os_TE_367193 Os_TE_367193 Chr4 16240233 16240232 + TWIF 586 0.0413 (122/2956) 0 * Os_TE_367194 Os_TE_367190 Chr4 16238862 16238861 - OSLINE1-5 4688 0.0004 (1/2460) 0 * * Os_TE_367185 Chr4 16235639 16235640 - RIRE2_LTR 11306 0.0915 (272/2974) 0 * Os_TE_367184 Os_TE_367184 Chr4 16235635 16235634 + RIRE2_LTR 11306 0.0942 (281/2984) 0 * Os_TE_367185 Os_TE_367180 Chr4 16233757 16233758 + COPI2_LTR 4733 0.0003 (1/2925) 0 * * Os_TE_367172 Chr4 16227450 16227449 + ORSgTETN00200005 1121 0.0265 (64/2417) 0 * * Os_TE_367171 Chr4 16227252 16227251 + SZ-58LTR 114 0.2508 (688/2743) 0 * * Os_TE_367170 Chr4 16227189 16225097 + SEVERIN-2 1952 0.8724 (2099/2406) 1 Intact * Os_TE_367148 Chr4 16222639 16222937 - STOWAWAY11_OS 292 0.7728 (2275/2944) 1 Intact * Os_TE_367141 Chr4 16220383 16220384 - AMYLTP 383 0.0222 (65/2925) 0 * Os_TE_367140 Os_TE_367140 Chr4 16220375 16220374 + AMYLTP 383 0.0231 (68/2941) 0 * Os_TE_367141 Os_TE_367138 Chr4 16220330 16220068 - ORSgTEMT02300007 256 0.7777 (2284/2937) 1 Intact Os_TE_367134 Os_TE_367134 Chr4 16220070 16220328 - STOWAWAY13_OS 251 0.7770 (2303/2964) 1 Intact Os_TE_367138 Os_TE_367131 Chr4 16219582 16219583 + OsSN3 183 0.2404 (719/2991) 0 * * Os_TE_367117 Chr4 16216553 16216554 + RETRO2A_LTR 12895 0.0232 (69/2979) 0 * Os_TE_367116 Os_TE_367116 Chr4 16216549 16216548 - RETRO1_LTR 8314 0.0221 (66/2984) 0 * Os_TE_367117 Os_TE_367115 Chr4 16215688 16215689 - CACTA-I 1124 0.1727 (514/2977) 0 * Os_TE_367114 Os_TE_367114 Chr4 16215686 16215685 + CACTA-I 1124 0.1717 (511/2976) 0 * Os_TE_367115 Os_TE_367111 Chr4 16215178 16215179 - Mudr5_OS 5952 0.2359 (701/2972) 0 * Os_TE_367110 Os_TE_367110 Chr4 16215177 16215176 + Mudr5_OS 5952 0.2365 (703/2973) 0 * Os_TE_367111 Os_TE_367106 Chr4 16213097 16213098 - CACTA-G1 797 0.0034 (8/2324) 0 * Os_TE_367105 Os_TE_367105 Chr4 16213095 16213094 + CACTA-G1 797 0.0034 (8/2328) 0 * Os_TE_367106 Os_TE_367103 Chr4 16211889 16211890 + GYPSY-A_LTR 8951 0.0034 (8/2353) 0 * Os_TE_367102 Os_TE_367102 Chr4 16211885 16211884 - GYPSY-A_LTR 8951 0.0030 (7/2362) 0 * Os_TE_367103 Os_TE_367096 Chr4 16208872 16208873 + RETROSAT2LTR 12796 0.0565 (131/2317) 0 * Os_TE_367095 Os_TE_367095 Chr4 16208870 16208869 - RETROSAT2LTR 12796 0.0589 (137/2325) 0 * Os_TE_367096 Os_TE_367092 Chr4 16205499 16205498 + OLO24 345 0.2357 (698/2962) 0 * * Os_TE_367089 Chr4 16204583 16204303 + ORSgTEMT05000092 279 0.7927 (2314/2919) 1 Intact * Os_TE_367084 Chr4 16202980 16202981 + NDNA1TNA_OS 334 0.0041 (12/2939) 0 * Os_TE_367083 Os_TE_367083 Chr4 16202978 16202977 - NDNA1TNA_OS 334 0.0034 (10/2923) 0 * Os_TE_367084 Os_TE_367081 Chr4 16202847 16201114 - ORSgTEMT00501443 152 0.7873 (2287/2905) 1 Intact Os_TE_367072 Os_TE_367072 Chr4 16201114 16202835 + ORSgTEMT00500560 148 0.7896 (2312/2928) 1 Intact Os_TE_367081 Os_TE_367070 Chr4 16201052 16201051 - ORSgTEMT01602404 253 0.2234 (652/2918) 0 * * Os_TE_367069 Chr4 16200770 16200771 + ORSgTEMT01602181 239 0.2280 (667/2926) 0 * * Os_TE_367063 Chr4 16198661 16198662 - RIREX_LTR 8828 0.2246 (662/2947) 0 * * Os_TE_367055 Chr4 16196294 16194925 + ORSgTETN00200005 1121 0.7727 (2288/2961) 1 Intact Os_TE_367052 Os_TE_367052 Chr4 16194926 16196291 + CACTA-H 1152 0.7718 (2303/2984) 1 Intact Os_TE_367055 Os_TE_367050 Chr4 16194822 16194821 + SPMLIKE 10989 0.0003 (1/2982) 0 * * Os_TE_367045 Chr4 16189915 16189916 - ENSPM5_OS 9581 0.0027 (8/2973) 0 * * Os_TE_367004 Chr4 16176897 16177168 + ORSgTETNOOT02577 232 0.6466 (1592/2462) 1 Intact * Os_TE_367003 Chr4 16176308 16176309 + ORSgTEMT00300122 416 0.0005 (1/2020) 0 * * Os_TE_367001 Chr4 16176289 16175867 + ORSiTEMT00300001 383 0.8237 (2009/2439) 1 Intact * Os_TE_366997 Chr4 16175702 16175369 + OLO24B 335 0.8612 (2084/2420) 1 Intact Os_TE_366994 Os_TE_366994 Chr4 16175362 16175697 - ORSgTEMT00101380 341 0.6935 (2041/2943) 0.92 Intact Os_TE_366997 Os_TE_366991 Chr4 16175058 16175059 - ORSgTEMT01602055 238 0.3263 (970/2973) 0 * Os_TE_366990 Os_TE_366990 Chr4 16175057 16175056 - ORSgTEMT01602430 234 0.2948 (845/2866) 0 * Os_TE_366991 Os_TE_366988 Chr4 16174479 16174480 + TRUNCATOR2_LTR 2904 0.0397 (119/2994) 0 * * Os_TE_366986 Chr4 16174101 16174102 + RIRE2_LTR 11306 0.0013 (4/2994) 0 * Os_TE_366985 Os_TE_366985 Chr4 16174097 16174096 - RIRE2_LTR 11306 0.0013 (4/2989) 0 * Os_TE_366986 Os_TE_366979 Chr4 16170904 16170903 + STOWAWAY1_OS 149 0.3349 (988/2950) 0 * Os_TE_366978 Os_TE_366978 Chr4 16170903 16170904 + ORSgTEMT01701743 163 0.3301 (975/2954) 0 * Os_TE_366979 Os_TE_366968 Chr4 16165324 16165325 + DS-RICE4N 715 0.1057 (282/2668) 0 * Os_TE_366967 Os_TE_366967 Chr4 16165317 16165316 - DS-RICE2N 613 0.1066 (284/2664) 0 * Os_TE_366968 Os_TE_366965 Chr4 16164633 16164632 + MuDR4_OS 7610 0.0219 (65/2967) 0 * * Os_TE_366953 Chr4 16163308 16163307 - OSTE20 496 0.0013 (4/2990) 0 * * Os_TE_366942 Chr4 16151653 16151654 - RIRE3A_LTR 10580 0.0417 (125/2997) 0 * * Os_TE_366939 Chr4 16151273 16149532 + ENSPM4_OS 11610 0.8257 (2463/2983) 1 Intact * Os_TE_366935 Chr4 16149445 16149444 - TRUNCATOR 2918 0.1134 (282/2486) 0 * * Os_TE_366934 Chr4 16149115 16133720 - MuDR3_OS 8604 0.8003 (2088/2609) 1 Intact * Os_TE_366927 Chr4 16133622 16133621 + ORSgTEMT00100536 315 0.2152 (587/2728) 0 * * Os_TE_366920 Chr4 16132660 16132659 - TRUNCATOR 2918 0.1116 (277/2481) 0 * Os_TE_366919 Os_TE_366919 Chr4 16132659 16132660 + TRUNCATOR 2918 0.1162 (290/2496) 0 * Os_TE_366920 Os_TE_366913 Chr4 16127521 16127522 - RIREX_LTR 8828 0.0025 (6/2377) 0 * * Os_TE_366811 Chr4 16076520 16076521 - RIREX_LTR 8828 0.0076 (18/2382) 0 * * Os_TE_366738 Chr4 16044883 16044884 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_366737 Os_TE_366737 Chr4 16044879 16044878 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_366738 Os_TE_366733 Chr4 16041614 16041923 + ORSgTEMT01900027 302 0.8351 (2395/2868) 1 Intact * Os_TE_366732 Chr4 16041456 16024772 + SZ-7A_LTR 11400 0.8847 (2134/2412) 1 Intact * Os_TE_366678 Chr4 16023720 16023719 + RIREX_LTR 8828 0.0003 (1/2977) 0 * * Os_TE_366677 Chr4 16023708 16023709 + SPMLIKE 10989 0.0003 (1/2975) 0 * Os_TE_366676 Os_TE_366676 Chr4 16023706 16023705 - ORSgTETN00200001 10994 0.0003 (1/2979) 0 * Os_TE_366677 Os_TE_366674 Chr4 16021274 16021275 + MUDRN5_OS 374 0.0010 (3/2979) 0 * Os_TE_366673 Os_TE_366673 Chr4 16021273 16021272 - ORSgTEMT00700002 381 0.0010 (3/2970) 0 * Os_TE_366674 Os_TE_366641 Chr4 16016103 16016104 + MERMITEA 1710 0.0077 (23/2994) 0 * Os_TE_366640 Os_TE_366640 Chr4 16016095 16016094 - MERMITEA 1710 0.0057 (17/2989) 0 * Os_TE_366641 Os_TE_366632 Chr4 16008546 16008545 - ORSiTERTOOT00056 5134 0.0004 (1/2475) 0 * * Os_TE_366631 Chr4 16007868 16007630 + ORSgTEMT01602051 240 0.8631 (2458/2848) 1 Intact Os_TE_366630 Os_TE_366630 Chr4 16007630 16007868 - TREP215 239 0.8291 (2479/2990) 1 Intact Os_TE_366631 Os_TE_366629 Chr4 16007085 16007084 - ENSPM4_OS 11610 0.0013 (4/2986) 0 * * Os_TE_366615 Chr4 16000681 16000682 - ORSgTETN00200001 10994 0.0010 (3/2927) 0 * * Os_TE_366606 Chr4 15998390 15998391 - RIRE3A_LTR 10580 0.0004 (1/2625) 0 * Os_TE_366605 Os_TE_366605 Chr4 15998386 15998385 + ORSiTERTOOT00027 10853 0.0004 (1/2628) 0 * Os_TE_366606 Os_TE_366579 Chr4 15990732 15990733 + RIRE1_LTR 8322 0.1899 (566/2981) 0 * * Os_TE_366577 Chr4 15990483 15990482 + SZ-22_LTR 4403 0.0003 (1/2948) 0 * * Os_TE_366574 Chr4 15989746 15989747 + SPMLIKE 10989 0.1395 (417/2989) 0 * Os_TE_366573 Os_TE_366573 Chr4 15989744 15989743 - ORSgTETN00200001 10994 0.1343 (400/2979) 0 * Os_TE_366574 Os_TE_366554 Chr4 15982942 15982943 + COPIA2-LTR_OS 6433 0.0077 (23/2994) 0 * Os_TE_366553 Os_TE_366553 Chr4 15982938 15982937 - COPIA2-LTR_OS 6433 0.0085 (22/2596) 0 * Os_TE_366554 Os_TE_366552 Chr4 15982471 15982472 - ORSgTEMT00600304 361 0.0020 (6/2985) 0 * * Os_TE_366551 Chr4 15982242 15982241 - ORSgTEMT01702045 137 0.1794 (527/2938) 0 * Os_TE_366550 Os_TE_366550 Chr4 15982234 15982235 - STOWAWAY1_OS 149 0.1814 (530/2921) 0 * Os_TE_366551 Os_TE_366549 Chr4 15981981 15981982 + SZ-55_LTR 10318 0.0003 (1/2860) 0 * Os_TE_366548 Os_TE_366548 Chr4 15981977 15981976 - SZ-55_LTR 10318 0.0004 (1/2810) 0 * Os_TE_366549 Os_TE_366535 Chr4 15975425 15975424 + SZ-58LTR 114 0.0077 (23/2988) 0 * * Os_TE_366534 Chr4 15975224 15975223 - MDM1 326 0.1825 (540/2959) 0 * * Os_TE_366527 Chr4 15974634 15974633 - ORSgTETNOOT01048 233 0.0020 (6/2949) 0 * * Os_TE_366525 Chr4 15974491 15974492 - STOWAWAY12_OS 312 0.1795 (533/2970) 0 * * Os_TE_366458 Chr4 15956135 15956136 - CACTA-M 1129 0.0014 (4/2959) 0 * Os_TE_366457 Os_TE_366457 Chr4 15956132 15956131 + CACTA-M 1129 0.0014 (4/2962) 0 * Os_TE_366458 Os_TE_366455 Chr4 15955240 15955239 + MuDR-N6_OS 836 0.0028 (8/2883) 0 * * Os_TE_366449 Chr4 15954485 15954484 - COPIA2-LTR_OS 6433 0.0003 (1/2924) 0 * * Os_TE_366431 Chr4 15947154 15947153 - OSTE33 1012 0.0007 (2/2974) 0 * * Os_TE_366430 Chr4 15947011 15947012 + ORSgTETNOOT02019 240 0.1795 (535/2981) 0 * * Os_TE_366426 Chr4 15945815 15945816 - EnSpm-11_OS 13126 0.1074 (292/2719) 0 * * Os_TE_366416 Chr4 15944434 15944435 - COPIA2-LTR_OS 6433 0.0010 (3/2966) 0 * Os_TE_366415 Os_TE_366415 Chr4 15944430 15944429 + COPIA2-LTR_OS 6433 0.0010 (3/2965) 0 * Os_TE_366416 Os_TE_366409 Chr4 15942074 15942075 + COPIA2-LTR_OS 6433 0.1487 (439/2953) 0 * Os_TE_366408 Os_TE_366408 Chr4 15942070 15942069 - COPIA2-LTR_OS 6433 0.1446 (429/2966) 0 * Os_TE_366409 Os_TE_366407 Chr4 15942060 15942059 - CASGRANDA 465 0.0148 (44/2980) 0 * * Os_TE_366394 Chr4 15940067 15940068 + INDITTO 263 0.1001 (290/2897) 0 * Os_TE_366393 Os_TE_366393 Chr4 15940065 15940064 - INDITTO 263 0.0940 (277/2946) 0 * Os_TE_366394 Os_TE_366381 Chr4 15935123 15935122 - STOWAWAY51_OS 246 0.0003 (1/2989) 0 * * Os_TE_366371 Chr4 15932169 15932170 + RIREX_LTR 8828 0.0013 (4/2997) 0 * Os_TE_366370 Os_TE_366370 Chr4 15932165 15932164 - RIREX_LTR 8828 0.0013 (4/2995) 0 * Os_TE_366371 Os_TE_366347 Chr4 15927739 15927738 + CPSC2_LTR 5202 0.6700 (2006/2994) 0 * * Os_TE_366337 Chr4 15924274 15924273 - ORSgTEMT01701858 154 0.0063 (19/2993) 0 * * Os_TE_366332 Chr4 15921826 15921827 + RIRE3_LTR 12054 0.0020 (6/2961) 0 * Os_TE_366331 Os_TE_366331 Chr4 15921822 15921821 - RIRE3_LTR 12054 0.0020 (6/2941) 0 * Os_TE_366332 Os_TE_366330 Chr4 15921802 15921803 - COPIA2-LTR_OS 6433 0.0074 (22/2960) 0 * * Os_TE_366318 Chr4 15920146 15920145 + STOWAWAY17_OS 259 0.0074 (22/2985) 0 * * Os_TE_366300 Chr4 15912923 15912922 - TRUNCATOR 2918 0.0014 (4/2962) 0 * * Os_TE_366294 Chr4 15911413 15911412 + SPMLIKE 10989 0.0314 (94/2990) 0 * * Os_TE_366288 Chr4 15908791 15908792 - ORSgTEMT01601208 238 0.0058 (17/2950) 0 * * Os_TE_366261 Chr4 15895326 15895327 + ORSiTERTOOT00028 8600 0.0003 (1/2971) 0 * Os_TE_366260 Os_TE_366260 Chr4 15895322 15895321 - TRUNCATOR2_LTR 2904 0.0003 (1/2995) 0 * Os_TE_366261 Os_TE_366255 Chr4 15892868 15892867 - INDITTO 263 0.6721 (2007/2986) 0 * * Os_TE_366249 Chr4 15886357 15886356 + TRUNCATOR 2918 0.0208 (62/2982) 0 * Os_TE_366248 Os_TE_366248 Chr4 15886356 15886357 - TRUNCATOR 2918 0.0171 (51/2979) 0 * Os_TE_366249 Os_TE_366241 Chr4 15884298 15884299 - ORSgTETN00200001 10994 0.0003 (1/2968) 0 * Os_TE_366240 Os_TE_366240 Chr4 15884296 15884295 + SPMLIKE 10989 0.0003 (1/2945) 0 * Os_TE_366241 Os_TE_366238 Chr4 15883939 15883938 + ORSgTEMT01701016 130 0.0362 (107/2957) 0 * * Os_TE_366236 Chr4 15883250 15883249 + ORSgTEMT01701258 154 0.0390 (116/2976) 0 * Os_TE_366235 Os_TE_366235 Chr4 15883247 15883248 + ORSgTEMT01701591 154 0.0376 (112/2975) 0 * Os_TE_366236 Os_TE_366208 Chr4 15875753 15875752 - SC-3_LTR 5748 0.0003 (1/2994) 0 * * Os_TE_366207 Chr4 15875539 15875540 + AMYLTP 383 0.0197 (59/2994) 0 * Os_TE_366206 Os_TE_366206 Chr4 15875531 15875530 - AMYLTP 383 0.0187 (56/2993) 0 * Os_TE_366207 Os_TE_366194 Chr4 15868478 15868479 - SC-3_LTR 5748 0.0003 (1/2968) 0 * Os_TE_366193 Os_TE_366193 Chr4 15868474 15868473 + ORSiTERTOOT00296 5553 0.0003 (1/2964) 0 * Os_TE_366194 Os_TE_366180 Chr4 15863291 15863292 - RIRE2_LTR 11306 0.1051 (293/2788) 0 * * Os_TE_366169 Chr4 15859708 15859709 - ORSgTEMT04200023 393 0.0027 (8/2986) 0 * * Os_TE_366152 Chr4 15853875 15853876 - HARB-1_OS 5166 0.0004 (1/2604) 0 * Os_TE_366151 Os_TE_366151 Chr4 15853870 15853869 + HARB-1_OS 5166 0.0004 (1/2602) 0 * Os_TE_366152 Os_TE_366150 Chr4 15853857 15853858 + AMYLTP 383 0.0008 (2/2508) 0 * * Os_TE_366057 Chr4 15530032 15530033 + RIRE1_LTR 8322 0.0022 (5/2313) 0 * * Os_TE_365891 Chr4 15448411 15448410 - RIREX_LTR 8828 0.0004 (1/2313) 0 * * Os_TE_365869 Chr4 15430244 15430245 - ORSiTETNOOT00107 906 0.0047 (11/2327) 0 * * Os_TE_365812 Chr4 15399419 15399418 - ORSgTEMT01601432 239 0.0043 (12/2800) 0 * Os_TE_365811 Os_TE_365811 Chr4 15399416 15399417 + ORSgTEMT01602181 239 0.0050 (14/2795) 0 * Os_TE_365812 Os_TE_365597 Chr4 15208088 15208087 + ORSgTETN00200005 1121 0.0042 (10/2368) 0 * * Os_TE_365595 Chr4 15208074 15208073 - CACTA-M 1129 0.0394 (93/2360) 0 * * Os_TE_365545 Chr4 15172996 15172995 + CACTA-H 1152 0.0043 (12/2794) 0 * * Os_TE_365387 Chr4 15050442 15050443 + AMYLTP 383 0.0004 (1/2568) 0 * * Os_TE_365309 Chr4 14961499 14961498 + ENSPM4_OS 11610 0.0051 (9/1762) 0 * * Os_TE_365236 Chr4 14883004 14883005 - ORSgTEMT01601770 238 0.0007 (2/2836) 0 * * Os_TE_365233 Chr4 14882035 14882034 + OsSN3 183 0.0053 (15/2850) 0 * * Os_TE_365232 Chr4 14881564 14881563 + ORSgTEMT01601934 207 0.0007 (2/2849) 0 * Os_TE_365231 Os_TE_365231 Chr4 14881561 14881562 - ORSgTEMT01601493 303 0.0007 (2/2845) 0 * Os_TE_365232 Os_TE_365225 Chr4 14880591 14880592 + SPMLIKE 10989 0.0394 (112/2843) 0 * Os_TE_365224 Os_TE_365224 Chr4 14880589 14880588 - ORSgTETN00200001 10994 0.0385 (109/2830) 0 * Os_TE_365225 Os_TE_365210 Chr4 14879487 14879488 + STOWAWAY11_OS 292 0.0025 (7/2752) 0 * * Os_TE_365169 Chr4 14860075 14833731 + SPMLIKE 10989 0.8835 (2003/2267) 1 Intact * Os_TE_364970 Chr4 14759175 14759176 + RIRE3A_LTR 10580 0.0014 (3/2123) 0 * Os_TE_364969 Os_TE_364969 Chr4 14759171 14759170 - RIRE3A_LTR 10580 0.0063 (14/2211) 0 * Os_TE_364970 Os_TE_364968 Chr4 14759129 14748164 + SPMLIKE 10989 0.7390 (1634/2211) 1 Intact * Os_TE_364953 Chr4 14741858 14740418 - MDR2 6967 0.7926 (2339/2951) 1 Intact Os_TE_364952 Os_TE_364952 Chr4 14740418 14741857 - MDR2 6967 0.7827 (2266/2895) 1 Intact Os_TE_364953 Os_TE_364951 Chr4 14740303 14740302 + SEVERIN-2 1952 0.0055 (15/2751) 0 * * Os_TE_364940 Chr4 14736110 14736111 - ORSgTEMT01602100 238 0.0081 (15/1842) -1 * * Os_TE_364923 Chr4 14732730 14732729 + DS-RICE4N 715 0.0004 (1/2780) 0 * * Os_TE_364918 Chr4 14731532 14731531 + NDNA1TNA_OS 334 0.0182 (54/2971) 0 * Os_TE_364917 Os_TE_364917 Chr4 14731531 14731532 + ORSgTEMT00101674 340 0.0191 (57/2978) 0 * Os_TE_364918 Os_TE_364910 Chr4 14727135 14727136 - COPIA2-LTR_OS 6433 0.0007 (2/2940) 0 * Os_TE_364909 Os_TE_364909 Chr4 14727131 14727130 + COPIA2-LTR_OS 6433 0.0007 (2/2940) 0 * Os_TE_364910 Os_TE_364873 Chr4 14715584 14715585 + TWIFBIG 3567 0.0003 (1/2983) 0 * * Os_TE_364872 Chr4 14714101 14714102 + ORSiTERTOOT00296 5553 0.0070 (21/2995) 0 * * Os_TE_364794 Chr4 14661883 14661884 - RETRO2_LTR 12874 0.0003 (1/2929) 0 * * Os_TE_364792 Chr4 14660759 14660760 - ORSgTETN00200001 10994 0.0041 (12/2921) 0 * Os_TE_364791 Os_TE_364791 Chr4 14660757 14660756 + SPMLIKE 10989 0.0045 (13/2921) 0 * Os_TE_364792 Os_TE_364780 Chr4 14653446 14653445 + SPMLIKE 10989 0.0004 (1/2787) 0 * * Os_TE_364768 Chr4 14650325 14650326 + SC-4_LTR 5218 0.0044 (13/2922) 0 * Os_TE_364767 Os_TE_364767 Chr4 14650321 14650320 - SC-4_LTR 5218 0.0044 (13/2922) 0 * Os_TE_364768 Os_TE_364579 Chr4 14488739 14488738 + RIRE3_LTR 12054 0.0261 (19/728) 0 * * Os_TE_364494 Chr4 14374579 14374580 - ORSgTETN00200001 10994 0.0033 (9/2730) 0 * * Os_TE_364443 Chr4 14314013 14314014 + CACTA-M 1129 0.0004 (1/2404) 0 * * Os_TE_364392 Chr4 14228790 14228791 + RETROSAT4_LTR 13504 0.0087 (25/2889) 0 * Os_TE_364391 Os_TE_364391 Chr4 14228786 14228785 - RETROSAT4_LTR 13504 0.0103 (30/2900) 0 * Os_TE_364392 Os_TE_364364 Chr4 14209423 14209033 - TYPEU1 380 0.6695 (1991/2974) 1 Intact Os_TE_364363 Os_TE_364363 Chr4 14209033 14209423 + TYPEU4 402 0.6695 (1969/2941) 1 Intact Os_TE_364364 Os_TE_364334 Chr4 14204797 14204796 + SINE03_OS 360 0.0024 (7/2926) 0 * * Os_TE_364320 Chr4 14199317 14191736 - MuDR4_OS 7610 0.1570 (464/2956) 1 Intact Os_TE_364315 Os_TE_364315 Chr4 14191736 14199317 - MuDR4_OS 7610 0.1688 (504/2986) 1 Intact Os_TE_364320 Os_TE_364296 Chr4 14181859 14181860 - SZ-67LTR 1540 0.1287 (385/2991) 0 * Os_TE_364295 Os_TE_364295 Chr4 14181855 14181854 + SZ-67LTR 1540 0.1276 (381/2987) 0 * Os_TE_364296 Os_TE_364293 Chr4 14179755 14179756 + SPMLIKE 10989 0.0175 (52/2975) 0 * * Os_TE_364275 Chr4 14165855 14165856 - ORSgTETN00200001 10994 0.0101 (29/2863) 0 * Os_TE_364274 Os_TE_364274 Chr4 14165853 14165852 + SPMLIKE 10989 0.0097 (28/2888) 0 * Os_TE_364275 Os_TE_364258 Chr4 14161630 14161629 - TRUNCATOR2_LTR 2904 0.0003 (1/2905) 0 * * Os_TE_364254 Chr4 14160089 14160090 + TRUNCATOR 2918 0.0007 (2/2930) 0 * * Os_TE_364226 Chr4 14139430 14139431 + TRUNCATOR 2918 0.0007 (2/2996) 0 * * Os_TE_364174 Chr4 14102117 14101676 + RIREX_LTR 8828 0.1625 (486/2990) 1 Solo_LTR Os_TE_364172 Os_TE_364172 Chr4 14101676 14102119 - RIREX_LTR 8828 0.1849 (487/2634) 1 Solo_LTR Os_TE_364174 Os_TE_364145 Chr4 14096400 14096401 + AMYLTP 383 0.0108 (32/2974) 0 * Os_TE_364144 Os_TE_364144 Chr4 14096392 14096391 - AMYLTP 383 0.0104 (31/2974) 0 * Os_TE_364145 Os_TE_364143 Chr4 14096317 14096316 + ORSgTEMT00500476 150 0.0027 (8/2977) 0 * * Os_TE_364140 Chr4 14087600 14087601 + ORSiTERTOOT00296 5553 0.0003 (1/2988) 0 * Os_TE_364139 Os_TE_364139 Chr4 14087596 14087595 - SC-3_LTR 5748 0.0003 (1/2982) 0 * Os_TE_364140 Os_TE_364126 Chr4 14083492 14083493 - MPING 430 0.0003 (1/2990) 0 * Os_TE_364125 Os_TE_364125 Chr4 14083490 14083489 + MPING 430 0.0003 (1/2987) 0 * Os_TE_364126 Os_TE_364123 Chr4 14083295 14083294 - ORSgTEMT00900099 250 0.0024 (7/2939) 0 * * Os_TE_364094 Chr4 14066693 14066694 - SC-3_LTR 5748 0.0013 (4/2987) 0 * * Os_TE_364086 Chr4 14059623 14059327 - STOWAWAY20_OS 278 0.1705 (507/2973) 1 Intact * Os_TE_364084 Chr4 14057544 14057545 + SZ-58LTR 114 0.4581 (1365/2980) 0 * Os_TE_364083 Os_TE_364083 Chr4 14057540 14057539 - SZ-58LTR 114 0.4121 (1140/2766) 0 * Os_TE_364084 Os_TE_364076 Chr4 14055915 14056061 + ORSgTEMT00502025 149 0.5671 (1647/2904) 1 Intact * Os_TE_364075 Chr4 14055846 14055847 - ENSPM4_OS 11610 0.0833 (242/2906) 0 * * Os_TE_364074 Chr4 14054993 14054755 + ORSgTEMT01601122 212 0.5739 (1646/2868) 1 Intact * Os_TE_363966 Chr4 13969612 13969611 - STOWAWAY1_OS 149 0.0010 (3/2994) 0 * * Os_TE_363905 Chr4 13933566 13933567 + CPR1_LTR 9493 0.5462 (1236/2263) 0 * * Os_TE_363904 Chr4 13932351 13932352 - ENSPM3_OS 10837 0.0106 (13/1221) 0 * * Os_TE_363901 Chr4 13929634 13929635 + TYPEU4 402 0.0376 (50/1331) 0 * Os_TE_363900 Os_TE_363900 Chr4 13929626 13929625 - TYPEU1 380 0.0383 (47/1227) 0 * Os_TE_363901 Os_TE_363885 Chr4 13918212 13917741 - OSTE15 1168 0.3994 (1080/2704) 1 Intact Os_TE_363883 Os_TE_363883 Chr4 13917738 13918210 - OSTE15 1168 0.4243 (1169/2755) 1 Intact Os_TE_363885 Os_TE_363879 Chr4 13917606 13917605 + SZ-67LTR 1540 0.0081 (22/2711) 0 * * Os_TE_363842 Chr4 13903971 13903972 + RIREX_LTR 8828 0.0328 (89/2713) 0 * Os_TE_363841 Os_TE_363841 Chr4 13903967 13903966 - RIREX_LTR 8828 0.0321 (87/2714) 0 * Os_TE_363842 Os_TE_363840 Chr4 13903679 13903680 - EnSpm-N2_OS 1282 0.0029 (8/2722) 0 * * Os_TE_363761 Chr4 13883062 13883061 + ORSiCMCM00100019 2717 0.0107 (28/2606) 0 * * Os_TE_363758 Chr4 13881794 13870196 - ORSgTETN00200001 10994 0.3942 (1066/2704) 1 Intact Os_TE_363749 Os_TE_363749 Chr4 13870194 13881794 + CACTA-B 1103 0.4000 (1090/2725) 1 Intact Os_TE_363758 Os_TE_363747 Chr4 13870081 13870080 - ORSgTEMT02400179 221 0.0088 (24/2717) 0 * * Os_TE_363733 Chr4 13865494 13865495 - GYPSY-A_LTR 8951 0.0013 (1/796) -1 * * Os_TE_363732 Chr4 13864937 13864938 + DS-RICE4N 715 0.2501 (732/2927) 0 * * Os_TE_363730 Chr4 13864890 13864891 - SC-3_LTR 5748 0.0105 (30/2852) 0 * Os_TE_363729 Os_TE_363729 Chr4 13864886 13864885 + ORSiTERTOOT00296 5553 0.0102 (30/2927) 0 * Os_TE_363730 Os_TE_363727 Chr4 13864868 13864867 + ORSgTEMT01602181 239 0.0788 (230/2918) 0 * Os_TE_363726 Os_TE_363726 Chr4 13864865 13864866 - ORSgTEMT01600768 234 0.0624 (180/2883) 0 * Os_TE_363727 Os_TE_363723 Chr4 13862515 13862514 + ORSgTEMT01600403 239 0.1017 (304/2989) 0 * * Os_TE_363720 Chr4 13862012 13862011 + ORSgTEMT01700136 154 0.1008 (300/2977) 0 * * Os_TE_363718 Chr4 13861646 13861645 - GAIJIN 147 0.1039 (310/2985) 0 * * Os_TE_363717 Chr4 13861259 13861258 + ORSiTEMT01500001 264 0.0984 (294/2988) 0 * Os_TE_363716 Os_TE_363716 Chr4 13861242 13861243 - STOWAWAY41_OS 264 0.1019 (305/2994) 0 * Os_TE_363717 Os_TE_363710 Chr4 13859810 13859809 + ORSiCMCM00100019 2717 0.0004 (1/2658) 0 * * Os_TE_363694 Chr4 13850891 13850892 + RIRE3_LTR 12054 0.0011 (3/2720) 0 * * Os_TE_363681 Chr4 13848531 13848532 + SZ-55_LTR 10318 0.0027 (8/2983) 0 * Os_TE_363680 Os_TE_363680 Chr4 13848527 13848526 - SZ-55_LTR 10318 0.0027 (8/2972) 0 * Os_TE_363681 Os_TE_363678 Chr4 13847005 13847004 - SC-10_LTR 4920 0.0224 (52/2320) 0 * * Os_TE_363657 Chr4 13833129 13833130 + GYPSY-A_LTR 8951 0.0003 (1/2979) 0 * * Os_TE_363607 Chr4 13818383 13818382 + ORSgTETNOOT01930 140 0.0027 (8/2987) 0 * * Os_TE_363581 Chr4 13809917 13809916 + STOWAWAY51_OS 246 0.0027 (8/2948) 0 * * Os_TE_363577 Chr4 13808237 13808238 + ORSgTETNOOT00670 249 0.0007 (2/2830) 0 * * Os_TE_363570 Chr4 13804981 13804982 - TOUNJ-30 377 0.0144 (43/2979) 0 * Os_TE_363569 Os_TE_363569 Chr4 13804979 13804978 + TOUNJ-30 377 0.0145 (43/2974) 0 * Os_TE_363570 Os_TE_363562 Chr4 13800268 13800269 + ENSPM3_OS 10837 0.0020 (6/2954) 0 * * Os_TE_363530 Chr4 13785564 13785565 - CPR1_LTR 9493 0.0024 (7/2957) 0 * * Os_TE_363445 Chr4 13726054 13726055 + COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_363444 Os_TE_363444 Chr4 13726050 13726049 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_363445 Os_TE_363439 Chr4 13725379 13725380 + SZ-19LTR 1513 0.0027 (8/2982) 0 * * Os_TE_363433 Chr4 13722709 13712967 + TRUNCATOR 2918 0.4310 (1181/2740) 1 Intact Os_TE_363408 Os_TE_363408 Chr4 13712963 13722709 - TRUNCATOR 2918 0.4027 (1063/2640) 1 Intact Os_TE_363433 Os_TE_363407 Chr4 13712845 13712846 + ORSiTERTOOT00027 10853 0.0077 (22/2857) 0 * Os_TE_363406 Os_TE_363406 Chr4 13712841 13712840 - RIRE3A_LTR 10580 0.0095 (27/2852) 0 * Os_TE_363407 Os_TE_363403 Chr4 13709375 13709374 - RETROSAT2LTR 12796 0.0888 (266/2994) 0 * * Os_TE_363339 Chr4 13691449 13691448 + INDITTO 263 0.0294 (88/2992) 0 * * Os_TE_363335 Chr4 13689488 13689487 - ORSgTEMT02400246 177 0.0083 (25/2995) 0 * * Os_TE_363325 Chr4 13682001 13680928 + RETRO2_LTR 12874 0.2650 (787/2970) 1 Solo_LTR * Os_TE_363312 Chr4 13676108 13676109 - TRUNCATOR2_LTR 2904 0.0218 (65/2982) 0 * Os_TE_363311 Os_TE_363311 Chr4 13676104 13676103 + ORSiCMCM00100019 2717 0.0207 (62/2990) 0 * Os_TE_363312 Os_TE_363279 Chr4 13663661 13662398 + RETRO2_LTR 12874 0.2207 (624/2827) 1 Solo_LTR Os_TE_363278 Os_TE_363278 Chr4 13662398 13663661 - RETRO2_LTR 12874 0.2667 (797/2988) 1 Solo_LTR Os_TE_363279 Os_TE_363248 Chr4 13647883 13647882 + TRUNCATOR 2918 0.0869 (260/2991) 0 * Os_TE_363247 Os_TE_363247 Chr4 13647882 13647883 - TRUNCATOR 2918 0.0845 (252/2982) 0 * Os_TE_363248 Os_TE_363245 Chr4 13645572 13645573 + OSTE33 1012 0.0065 (19/2932) 0 * * Os_TE_363242 Chr4 13645121 13645120 - SC-8_LTR 4951 0.0003 (1/2963) 0 * * Os_TE_363239 Chr4 13643425 13643426 + SC-8_LTR 4951 0.0007 (2/2984) 0 * Os_TE_363238 Os_TE_363238 Chr4 13643421 13643420 - SC-8_LTR 4951 0.0007 (2/2983) 0 * Os_TE_363239 Os_TE_363219 Chr4 13626266 13626267 + ORSgTETNOOT01668 244 0.1896 (568/2995) 0 * * Os_TE_363207 Chr4 13623586 13623585 - SC-3_LTR 5748 0.0013 (4/2966) 0 * * Os_TE_363185 Chr4 13616440 13616441 + TWIFB1 3737 0.0067 (20/2985) 0 * * Os_TE_363184 Chr4 13616417 13616418 - ORSiTETNOOT00134 607 0.0007 (2/2980) 0 * Os_TE_363183 Os_TE_363183 Chr4 13616410 13616409 + TWIF 586 0.0007 (2/2977) 0 * Os_TE_363184 Os_TE_363172 Chr4 13606684 13606685 + COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * * Os_TE_363141 Chr4 13593725 13593726 - ORSiTERT00200154 9386 0.0007 (2/2986) 0 * Os_TE_363140 Os_TE_363140 Chr4 13593719 13593718 + TRUNCATOR 2918 0.0013 (4/2989) 0 * Os_TE_363141 Os_TE_363132 Chr4 13590627 13590628 + SZ-35LTR 3853 0.0014 (4/2959) 0 * * Os_TE_363067 Chr4 13557851 13557850 + STOWAWAY20_OS 278 0.1596 (474/2970) 0 * * Os_TE_363059 Chr4 13556801 13556802 + TRUNCATOR 2918 0.0016 (4/2458) 0 * * Os_TE_363054 Chr4 13556269 13556268 + STOWAWAY51_OS 246 0.2553 (757/2965) 0 * * Os_TE_363046 Chr4 13555624 13555625 + STOLA 369 0.0078 (23/2961) 0 * * Os_TE_363041 Chr4 13550730 13550731 - ORSgTEMT02400179 221 0.0013 (3/2285) 0 * Os_TE_363040 Os_TE_363040 Chr4 13550729 13550728 - TYPEM 227 0.0017 (4/2293) 0 * Os_TE_363041 Os_TE_363030 Chr4 13548812 13533511 - ENSPM4_OS 11610 0.5056 (1501/2969) 1 Intact Os_TE_363021 Os_TE_363021 Chr4 13533510 13548812 + ENSPM4_OS 11610 0.5329 (1498/2811) 1 Intact Os_TE_363030 Os_TE_363010 Chr4 13531857 13531856 + BUHUI 375 0.0031 (7/2272) 0 * Os_TE_363009 Os_TE_363009 Chr4 13531855 13531856 + CACTA-K 1131 0.0035 (8/2275) 0 * Os_TE_363010 Os_TE_363004 Chr4 13526012 13526013 - OSTE33 1012 0.0023 (7/2997) 0 * Os_TE_363003 Os_TE_363003 Chr4 13526003 13526002 + OSTE33 1012 0.0017 (5/2996) 0 * Os_TE_363004 Os_TE_363001 Chr4 13525952 13525951 + ORSgTEMT00901844 250 0.2551 (764/2995) 0 * Os_TE_363000 Os_TE_363000 Chr4 13525948 13525949 - ORSgTEMT00900099 250 0.2530 (757/2992) 0 * Os_TE_363001 Os_TE_362999 Chr4 13524769 13524770 + ORSgTETNOOT00032 218 0.0070 (21/2979) 0 * * Os_TE_362990 Chr4 13520340 13520341 - SZ-9LTR 965 0.0030 (9/2987) 0 * Os_TE_362989 Os_TE_362989 Chr4 13520336 13520335 + SZ-9LTR 965 0.0030 (9/2983) 0 * Os_TE_362990 Os_TE_362988 Chr4 13519978 13519977 - ORSgTEMT00900563 246 0.2540 (747/2941) 0 * * Os_TE_362986 Chr4 13518416 13518415 + ORSgTETNOOT00686 140 0.2486 (732/2944) 0 * * Os_TE_362976 Chr4 13515945 13515944 - SUSU 279 0.0310 (70/2261) 0 * * Os_TE_362971 Chr4 13514745 13514965 - ORSgTEMT01602467 227 0.7614 (2269/2980) 1 Intact * Os_TE_362967 Chr4 13510912 13510911 - STOWAWAY13_OS 251 0.2473 (734/2968) 0 * * Os_TE_362953 Chr4 13508216 13508217 - ORSgTETN00200001 10994 0.0056 (10/1780) 0 * Os_TE_362952 Os_TE_362952 Chr4 13508214 13508213 + SPMLIKE 10989 0.0121 (30/2475) 0 * Os_TE_362953 Os_TE_362924 Chr4 13500434 13500433 - RIRE2_LTR 11306 0.0220 (65/2951) 0 * * Os_TE_362922 Chr4 13500146 13500147 + SZ-9LTR 965 0.1971 (588/2983) 0 * * Os_TE_362897 Chr4 13493589 13493590 - TYPEM 227 0.0017 (5/2976) 0 * Os_TE_362896 Os_TE_362896 Chr4 13493588 13493587 - ORSgTEMT02400179 221 0.0024 (7/2973) 0 * Os_TE_362897 Os_TE_362895 Chr4 13493327 13493326 + ORSgTETNOOT00012 241 0.0240 (71/2964) 0 * * Os_TE_362886 Chr4 13490365 13490366 - ORMOSIA 482 0.0024 (7/2968) 0 * * Os_TE_362878 Chr4 13487423 13487422 - TRUNCATOR 2918 0.1147 (340/2965) 0 * * Os_TE_362875 Chr4 13486589 13486588 - STOWAWAY51_OS 246 0.0024 (7/2946) 0 * Os_TE_362874 Os_TE_362874 Chr4 13486583 13486584 + STOWAWAY51_OS 246 0.0024 (7/2937) 0 * Os_TE_362875 Os_TE_362872 Chr4 13486512 13486511 - SZ-40LTR 2465 0.0024 (7/2959) 0 * * Os_TE_362867 Chr4 13485513 13485512 + ORSgTEMT00901542 248 0.0017 (5/2981) 0 * * Os_TE_362837 Chr4 13473469 13473222 - ORSgTETNOOT02044 254 0.4431 (1249/2819) 1 Intact * Os_TE_362825 Chr4 13470839 13470838 + RIREX_LTR 8828 0.0047 (14/2975) 0 * * Os_TE_362803 Chr4 13464802 13464801 - CRM-LTR_OS 7749 0.0003 (1/2958) 0 * * Os_TE_362801 Chr4 13464361 13464362 + KIDDOC 275 0.0003 (1/2969) 0 * Os_TE_362800 Os_TE_362800 Chr4 13464360 13464359 - KIDDOC 275 0.0003 (1/2915) 0 * Os_TE_362801 Os_TE_362777 Chr4 13448587 13448586 + ORSgTETNOOT00908 242 0.0029 (8/2731) 0 * * Os_TE_362754 Chr4 13441078 13441077 - COPIA2-LTR_OS 6433 0.0027 (8/2959) 0 * * Os_TE_362735 Chr4 13434079 13434078 - CASTAWAY 364 0.0014 (4/2935) 0 * * Os_TE_362733 Chr4 13433723 13433722 + ORSgTEMT00901798 232 0.0023 (7/2996) 0 * Os_TE_362732 Os_TE_362732 Chr4 13433719 13433720 + ORSgTEMT00901780 248 0.0020 (6/2993) 0 * Os_TE_362733 Os_TE_362731 Chr4 13433679 13433680 + TRUNCATOR 2918 0.0003 (1/2991) 0 * * Os_TE_362668 Chr4 13413420 13413419 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * * Os_TE_362656 Chr4 13409508 13409507 - SZ-67LTR 1540 0.0172 (51/2962) 0 * * Os_TE_362649 Chr4 13408445 13408446 - OSLINE1-2 7128 0.0097 (29/2986) 0 * * Os_TE_362648 Chr4 13408214 13407880 + CASTAWAY 364 0.2856 (849/2973) 1 Intact Os_TE_362647 Os_TE_362647 Chr4 13407880 13408210 + ORSgTEMT00600124 361 0.2869 (855/2980) 1 Intact Os_TE_362648 Os_TE_362645 Chr4 13407426 13407427 + COPI2_LTR 4733 0.0003 (1/2959) 0 * * Os_TE_362637 Chr4 13405433 13405434 + COPIA2-LTR_OS 6433 0.0003 (1/2946) 0 * * Os_TE_362630 Chr4 13402878 13402879 + SPMLIKE 10989 0.0003 (1/2926) 0 * Os_TE_362629 Os_TE_362629 Chr4 13402876 13402875 - SPMLIKE 10989 0.0003 (1/2950) 0 * Os_TE_362630 Os_TE_362627 Chr4 13401467 13401468 + INDITTO 263 0.0007 (2/2995) 0 * Os_TE_362626 Os_TE_362626 Chr4 13401465 13401464 - INDITTO 263 0.0007 (2/2997) 0 * Os_TE_362627 Os_TE_362623 Chr4 13399104 13399105 + CACTA-I 1124 0.6220 (1833/2947) 0 * Os_TE_362622 Os_TE_362622 Chr4 13399102 13399101 - CACTA-I 1124 0.6144 (1761/2866) 0 * Os_TE_362623 Os_TE_362615 Chr4 13396783 13396782 - COPI2_LTR 4733 0.0003 (1/2974) 0 * * Os_TE_362614 Chr4 13396657 13396658 + RETROSAT4_LTR 13504 0.0172 (51/2972) 0 * Os_TE_362613 Os_TE_362613 Chr4 13396653 13396652 - RETROSAT4_LTR 13504 0.0181 (54/2977) 0 * Os_TE_362614 Os_TE_362610 Chr4 13395291 13395292 + ORSgTETNOOT00908 242 0.0181 (54/2983) 0 * * Os_TE_362595 Chr4 13388332 13388331 - ORSgTETN00200001 10994 0.1668 (484/2901) 0 * * Os_TE_362592 Chr4 13387859 13387860 + RETROSAT4_LTR 13504 0.0239 (71/2965) 0 * * Os_TE_362554 Chr4 13371956 13371957 + CLOUD-3 550 0.0047 (14/2982) 0 * * Os_TE_362551 Chr4 13371389 13371390 + CACTA-B 1103 0.1036 (309/2982) 0 * * Os_TE_362549 Chr4 13371181 13371182 + SPMLIKE 10989 0.0023 (7/2979) 0 * * Os_TE_362533 Chr4 13359135 13359136 + COPIA2-LTR_OS 6433 0.0004 (1/2622) 0 * Os_TE_362532 Os_TE_362532 Chr4 13359131 13359130 - COPIA2-LTR_OS 6433 0.0004 (1/2619) 0 * Os_TE_362533 Os_TE_362529 Chr4 13359049 13359050 - RIREX_LTR 8828 0.0181 (54/2988) 0 * Os_TE_362528 Os_TE_362528 Chr4 13359045 13359044 + RIREX_LTR 8828 0.0178 (53/2983) 0 * Os_TE_362529 Os_TE_362523 Chr4 13356913 13356914 - AMYLTP 383 0.0010 (3/2952) 0 * Os_TE_362522 Os_TE_362522 Chr4 13356905 13356904 + AMYLTP 383 0.0010 (3/2956) 0 * Os_TE_362523 Os_TE_362506 Chr4 13353005 13353006 - OSTONOR1_LTR 6440 0.0050 (15/2990) 0 * * Os_TE_362500 Chr4 13346692 13346691 - TRUNCATOR 2918 0.0047 (14/2988) 0 * Os_TE_362499 Os_TE_362499 Chr4 13346691 13346692 + TRUNCATOR 2918 0.0047 (14/2984) 0 * Os_TE_362500 Os_TE_362495 Chr4 13343914 13343913 + RETROFIT2_LTR 4774 0.0003 (1/2987) 0 * * Os_TE_362489 Chr4 13341258 13341257 + SPMLIKE 10989 0.0047 (14/2985) 0 * * Os_TE_362482 Chr4 13338699 13338700 - ORSgTETN00200001 10994 0.0047 (14/2980) 0 * * Os_TE_362444 Chr4 13320552 13320553 + ORSgTEMT05100009 236 0.0003 (1/2984) 0 * * Os_TE_362421 Chr4 13317864 13317865 - ORSgTETNOOT01930 140 0.0043 (13/2997) 0 * * Os_TE_362418 Chr4 13317008 13317009 - COPIA2-LTR_OS 6433 0.0074 (20/2696) 0 * Os_TE_362417 Os_TE_362417 Chr4 13317004 13317003 + COPIA2-LTR_OS 6433 0.0063 (17/2701) 0 * Os_TE_362418 Os_TE_362383 Chr4 13308412 13308413 + RIREX_LTR 8828 0.0068 (20/2932) 0 * Os_TE_362382 Os_TE_362382 Chr4 13308408 13308407 - RIREX_LTR 8828 0.0068 (20/2928) 0 * Os_TE_362383 Os_TE_362371 Chr4 13307397 13296070 - ORSgTERT00201216 11284 0.2596 (759/2924) 1 Intact * Os_TE_362337 Chr4 13287322 13287323 + CACTA-H 1152 0.1240 (370/2985) 0 * Os_TE_362336 Os_TE_362336 Chr4 13287320 13287319 - CACTA-H 1152 0.0255 (69/2709) 0 * Os_TE_362337 Os_TE_362334 Chr4 13287081 13287080 + ORSgTEMT01702111 154 0.0044 (13/2988) 0 * Os_TE_362333 Os_TE_362333 Chr4 13287080 13287081 + STOWAWAY1_OS 149 0.0047 (14/2983) 0 * Os_TE_362334 Os_TE_362328 Chr4 13285359 13285360 - ORSiTERTOOT00392 5205 0.0064 (19/2985) 0 * Os_TE_362327 Os_TE_362327 Chr4 13285355 13285354 + ORSiTERTOOT00392 5205 0.0060 (18/2984) 0 * Os_TE_362328 Os_TE_362315 Chr4 13281682 13273032 + CACTA-B 1103 0.5689 (1697/2983) 1 Intact Os_TE_362294 Os_TE_362294 Chr4 13273032 13281680 - ORSgTETN00200001 10994 0.5892 (1652/2804) 1 Intact Os_TE_362315 Os_TE_362226 Chr4 13244885 13244886 - COPIA2-LTR_OS 6433 0.0010 (3/2958) 0 * Os_TE_362225 Os_TE_362225 Chr4 13244881 13244880 + COPIA2-LTR_OS 6433 0.0007 (2/2954) 0 * Os_TE_362226 Os_TE_362217 Chr4 13243342 13243341 - TREP215 239 0.0242 (71/2938) 0 * * Os_TE_362215 Chr4 13242621 13241327 - CACTA-H 1152 0.3530 (1029/2915) 1 Intact * Os_TE_362193 Chr4 13235764 13235765 + TREP215 239 0.0013 (4/2976) 0 * * Os_TE_362188 Chr4 13234443 13234442 - TRUNCATOR2_LTR 2904 0.1409 (418/2966) 0 * * Os_TE_362138 Chr4 13211933 13211934 - SC-3_LTR 5748 0.0003 (1/2990) 0 * Os_TE_362137 Os_TE_362137 Chr4 13211929 13211928 + ORSiTERTOOT00296 5553 0.0003 (1/2989) 0 * Os_TE_362138 Os_TE_362136 Chr4 13209580 13209581 - SC-8_LTR 4951 0.0003 (1/2965) 0 * Os_TE_362135 Os_TE_362135 Chr4 13209576 13209575 + SC-8_LTR 4951 0.0003 (1/2962) 0 * Os_TE_362136 Os_TE_362134 Chr4 13209388 13209389 + SC-8_LTR 4951 0.0010 (3/2970) 0 * Os_TE_362133 Os_TE_362133 Chr4 13209384 13209383 - SC-8_LTR 4951 0.0010 (3/2971) 0 * Os_TE_362134 Os_TE_362124 Chr4 13206560 13206559 - OSLINE1_1 4159 0.0010 (3/2916) 0 * * Os_TE_362120 Chr4 13203883 13203882 + ORSiTERTOOT00291 11421 0.0003 (1/2987) 0 * * Os_TE_362117 Chr4 13201387 13201386 - TYPEM 227 0.0003 (1/2994) 0 * * Os_TE_362114 Chr4 13200481 13200480 - SZ-40LTR 2465 0.0003 (1/2967) 0 * * Os_TE_362113 Chr4 13200452 13200453 + ORSiCMCM00100019 2717 0.0074 (22/2956) 0 * * Os_TE_362110 Chr4 13200423 13200422 + DS-RICE4N 715 0.0091 (27/2955) 0 * * Os_TE_362109 Chr4 13199371 13199372 - TRUNCATOR2_LTR 2904 0.0110 (33/2996) 0 * Os_TE_362108 Os_TE_362108 Chr4 13199367 13199366 + ORSiTERTOOT00028 8600 0.0113 (34/2996) 0 * Os_TE_362109 Os_TE_362103 Chr4 13194004 13194003 - TRUNCATOR 2918 0.0059 (10/1688) 0 * * Os_TE_362095 Chr4 13184345 13184346 - RIRE3_LTR 12054 0.1144 (342/2989) 0 * Os_TE_362094 Os_TE_362094 Chr4 13184341 13184340 + RIRE3_LTR 12054 0.1099 (328/2984) 0 * Os_TE_362095 Os_TE_362049 Chr4 13164758 13164759 + STOWAWAY15-2_OS 145 0.0003 (1/2978) 0 * * Os_TE_362039 Chr4 13160795 13160796 + ORSiTERTOOT00291 11421 0.0021 (6/2870) 0 * * Os_TE_362009 Chr4 13152240 13152239 + TRUNCATOR 2918 0.0937 (278/2966) 0 * * Os_TE_361975 Chr4 13141474 13141475 - SZ-38 8643 0.0006 (1/1590) 0 * * Os_TE_361953 Chr4 13137616 13137617 + ORSgTEMT00100531 325 0.0149 (33/2216) 0 * Os_TE_361952 Os_TE_361952 Chr4 13137612 13137611 + NDNA1TNA_OS 334 0.0153 (34/2215) 0 * Os_TE_361953 Os_TE_361950 Chr4 13136765 13136766 + OSTE15 1168 0.0085 (19/2230) 0 * * Os_TE_361947 Chr4 13135681 13135682 + COPIA1-LTR_OS 9292 0.0090 (20/2222) 0 * * Os_TE_361934 Chr4 13123818 13123819 + ORSiCMCM00100019 2717 0.1516 (335/2210) 0 * Os_TE_361933 Os_TE_361933 Chr4 13123814 13123813 - TRUNCATOR2_LTR 2904 0.1637 (365/2230) 0 * Os_TE_361934 Os_TE_361929 Chr4 13123133 13123132 + ORSgTEMT00101674 340 0.0115 (25/2171) 0 * Os_TE_361928 Os_TE_361928 Chr4 13123070 13123071 + ORSgTEMT00101121 331 0.0113 (25/2210) 0 * Os_TE_361929 Os_TE_361927 Chr4 13122965 13122966 + SPMLIKE 10989 0.3557 (796/2238) 0 * Os_TE_361926 Os_TE_361926 Chr4 13122963 13122962 - ORSgTETN00200001 10994 0.3358 (733/2183) 0 * Os_TE_361927 Os_TE_361925 Chr4 13122940 13122939 + ORSgTEMT00901844 250 0.0098 (20/2034) 0 * Os_TE_361924 Os_TE_361924 Chr4 13122936 13122937 - ORSgTEMT00900099 250 0.0040 (9/2225) 0 * Os_TE_361925 Os_TE_361921 Chr4 13122756 13117777 - TRUNCATOR2_LTR 2904 0.4599 (1026/2231) 1 Intact Os_TE_361910 Os_TE_361910 Chr4 13117777 13122756 + ORSiTERTOOT00028 8600 0.4782 (1019/2131) 1 Intact Os_TE_361921 Os_TE_361909 Chr4 13117754 13117755 - RIRE2_LTR 11306 0.1661 (371/2233) 0 * Os_TE_361908 Os_TE_361908 Chr4 13117750 13117749 + RIRE2_LTR 11306 0.1496 (304/2032) 0 * Os_TE_361909 Os_TE_361907 Chr4 13117716 13117715 - ORSgTEMT00901312 242 0.0027 (6/2223) 0 * Os_TE_361906 Os_TE_361906 Chr4 13117715 13117716 - ORSgTEMT00900563 246 0.0022 (5/2247) 0 * Os_TE_361907 Os_TE_361903 Chr4 13116826 13116825 - RETRO2_LTR 12874 0.0248 (56/2261) 0 * * Os_TE_361902 Chr4 13116544 13116545 - LINE-4_OS 3662 0.1230 (266/2163) 0 * * Os_TE_361885 Chr4 13111317 13111318 - RIRE3_LTR 12054 0.0220 (33/1497) 0 * Os_TE_361884 Os_TE_361884 Chr4 13111313 13111312 + RIRE3_LTR 12054 0.0206 (31/1504) 0 * Os_TE_361885 Os_TE_361883 Chr4 13111289 13111290 - ORSgTERT00200396 7338 0.0119 (18/1515) 0 * * Os_TE_361832 Chr4 13088805 13088806 - COPIA2-LTR_OS 6433 0.0004 (1/2446) 0 * Os_TE_361831 Os_TE_361831 Chr4 13088801 13088800 + COPIA2-LTR_OS 6433 0.0004 (1/2443) 0 * Os_TE_361832 Os_TE_361825 Chr4 13083848 13083849 + SINE1OS 127 0.1809 (414/2289) 0 * * Os_TE_361817 Chr4 13080980 13080979 - SZ-35LTR 3853 0.0013 (3/2295) 0 * * Os_TE_361718 Chr4 13026118 13026119 + RIREX_LTR 8828 0.0005 (1/1965) 0 * * Os_TE_361647 Chr4 13002520 13002521 - RETRO1_LTR 8314 0.0831 (248/2985) 0 * Os_TE_361646 Os_TE_361646 Chr4 13002516 13002515 + RETRO2A_LTR 12895 0.0826 (247/2992) 0 * Os_TE_361647 Os_TE_361615 Chr4 12987948 12987947 + TRUNCATOR 2918 0.1272 (379/2980) 0 * Os_TE_361614 Os_TE_361614 Chr4 12987947 12987948 - TRUNCATOR 2918 0.1185 (351/2963) 0 * Os_TE_361615 Os_TE_361596 Chr4 12981826 12981827 - COPIA2-LTR_OS 6433 0.0003 (1/2973) 0 * * Os_TE_361590 Chr4 12978649 12978650 + ORSiCMCM00100019 2717 0.1206 (354/2936) 0 * * Os_TE_361573 Chr4 12970198 12970197 - ORSgTETN00200001 10994 0.6205 (1723/2777) 0 * * Os_TE_361541 Chr4 12953005 12953004 + ORSgTEMT01601445 230 0.0015 (4/2626) 0 * * Os_TE_361501 Chr4 12937537 12950785 - ORSgTETN00200001 10994 0.4599 (930/2022) 1 Intact * Os_TE_361499 Chr4 12937366 12937365 + AMYLTP 383 0.2017 (416/2062) 0 * * Os_TE_361484 Chr4 12933189 12933190 + COPIA2-LTR_OS 6433 0.4164 (1222/2935) 0 * * Os_TE_361443 Chr4 12914529 12914530 + GYPSY1-LTR_OS 8900 0.0206 (54/2622) 0 * * Os_TE_361441 Chr4 12913782 12913781 - OSTE15 1168 0.0175 (46/2629) 0 * Os_TE_361440 Os_TE_361440 Chr4 12913781 12913782 - OSTE15 1168 0.0199 (57/2868) 0 * Os_TE_361441 Os_TE_361439 Chr4 12913503 12911465 - SEVERIN-2 1952 0.3303 (940/2846) 1 Intact * Os_TE_361429 Chr4 12908959 12908958 - OSCOPIA1_LTR 4754 0.1337 (395/2955) 0 * * Os_TE_361390 Chr4 12886287 12886288 + STOWAWAY17_OS 259 0.0018 (2/1094) 0 * * Os_TE_361328 Chr4 12843973 12843974 + ORSiTERTOOT00226 792 0.0010 (1/983) 0 * Os_TE_361327 Os_TE_361327 Chr4 12843969 12843968 - SZ-22_LTR 4403 0.0010 (1/986) 0 * Os_TE_361328 Os_TE_361139 Chr4 12751984 12751985 - ENSPM2_OS 10580 0.0049 (5/1027) 0 * Os_TE_361138 Os_TE_361138 Chr4 12751982 12751981 + ENSPM2_OS 10580 0.0068 (7/1029) 0 * Os_TE_361139 Os_TE_361134 Chr4 12750129 12750130 - COPIA1-LTR_OS 9292 0.6464 (1830/2831) 0 * * Os_TE_361092 Chr4 12729079 12729080 - RIRE3A_LTR 10580 0.0029 (3/1023) 0 * * Os_TE_361088 Chr4 12727655 12727656 - RETROSAT2LTR 12796 0.6557 (1870/2852) 0 * * Os_TE_361087 Chr4 12727522 12727521 - ORSiTETNOOT00107 906 0.0069 (20/2892) 0 * Os_TE_361086 Os_TE_361086 Chr4 12727518 12727519 + ORSiTETNOOT00107 906 0.0073 (21/2885) 0 * Os_TE_361087 Os_TE_361058 Chr4 12709864 12709863 + RIREX_LTR 8828 0.1350 (404/2993) 0 * * Os_TE_361049 Chr4 12705433 12705434 - RIRE3A_LTR 10580 0.0126 (37/2935) 0 * Os_TE_361048 Os_TE_361048 Chr4 12705429 12705428 + ORSiTERTOOT00027 10853 0.0112 (33/2935) 0 * Os_TE_361049 Os_TE_361030 Chr4 12698904 12698905 + SC-4_LTR 5218 0.0047 (14/2954) 0 * * Os_TE_361023 Chr4 12696577 12696578 - AMYLTP 383 0.0020 (6/2984) 0 * Os_TE_361022 Os_TE_361022 Chr4 12696569 12696568 + AMYLTP 383 0.0017 (5/2986) 0 * Os_TE_361023 Os_TE_361020 Chr4 12695774 12695773 + SEVERIN-2 1952 0.2511 (744/2963) 0 * * Os_TE_361014 Chr4 12693986 12693985 + ENSPM4_OS 11610 0.6635 (1944/2930) 0 * * Os_TE_361000 Chr4 12685779 12693454 + RIRE1_LTR 8322 0.3399 (1017/2992) 1 Intact * Os_TE_360998 Chr4 12684757 12684756 + ORSiTEMT06800002 376 0.0017 (5/2979) 0 * Os_TE_360997 Os_TE_360997 Chr4 12684756 12684757 + CACTA-M 1129 0.0020 (6/2991) 0 * Os_TE_360998 Os_TE_360985 Chr4 12675837 12675838 + COPIA2-LTR_OS 6433 0.0003 (1/2971) 0 * * Os_TE_360984 Chr4 12675459 12675320 + ORSgTEMT00500718 138 0.3535 (1021/2888) 1 Intact Os_TE_360982 Os_TE_360982 Chr4 12675320 12675458 + ORSgTEMT00502215 139 0.3462 (1020/2946) 1 Intact Os_TE_360984 Os_TE_360964 Chr4 12670187 12670188 + RIREX_LTR 8828 0.0003 (1/2960) 0 * Os_TE_360963 Os_TE_360963 Chr4 12670183 12670182 - RIREX_LTR 8828 0.0003 (1/2981) 0 * Os_TE_360964 Os_TE_360962 Chr4 12669892 12669893 + COPI2_LTR 4733 0.0003 (1/2902) 0 * * Os_TE_360959 Chr4 12669767 12669768 - ORSgTEMT00901071 248 0.6568 (1893/2882) 0 * * Os_TE_360956 Chr4 12668821 12668820 + SPMLIKE 10989 0.0123 (37/2996) 0 * * Os_TE_360949 Chr4 12664285 12664135 - ORSgTEMT01701348 105 0.3401 (1016/2987) 1 Intact Os_TE_360948 Os_TE_360948 Chr4 12664130 12664278 - ORSgTEMT01702216 170 0.3420 (1023/2991) 1 Intact Os_TE_360949 Os_TE_360936 Chr4 12655330 12655331 - ORSgTEMT01400033 210 0.0017 (5/2973) 0 * * Os_TE_360919 Chr4 12645691 12645690 + MERMITEB 1610 0.0014 (4/2893) 0 * * Os_TE_360907 Chr4 12643360 12643361 - ORSgTERT00201216 11284 0.4119 (1234/2996) 0 * Os_TE_360906 Os_TE_360906 Chr4 12643356 12643355 - RIRE2_LTR 11306 0.4027 (1201/2982) 0 * Os_TE_360907 Os_TE_360900 Chr4 12642466 12642465 - SEVERIN-2 1952 0.4997 (1469/2940) 0 * * Os_TE_360896 Chr4 12640356 12640355 - ORSgTEMT00900417 246 0.0004 (1/2732) 0 * * Os_TE_360895 Chr4 12639925 12639926 - RETROSAT2LTR 12796 0.0089 (10/1121) -1 * Os_TE_360894 Os_TE_360894 Chr4 12639923 12639922 + RETROSAT2LTR 12796 0.0046 (5/1088) -1 * Os_TE_360895 Os_TE_360890 Chr4 12639237 12639473 - ORSgTEMT01601493 303 0.3645 (998/2738) 1 Intact * Os_TE_360885 Chr4 12637075 12637076 - OSLINE1-4 4779 0.6775 (1996/2946) 0 * * Os_TE_360840 Chr4 12623664 12623665 + TRUNCATOR 2918 0.0075 (22/2940) 0 * * Os_TE_360827 Chr4 12616117 12616116 + ENSPM3_OS 10837 0.6649 (1960/2948) 0 * * Os_TE_360819 Chr4 12608595 12608596 + RIREX_LTR 8828 0.6690 (1997/2985) 0 * * Os_TE_360818 Chr4 12607754 12606831 + COPIA2-LTR_OS 6433 0.3410 (1014/2974) 1 Solo_LTR Os_TE_360815 Os_TE_360815 Chr4 12606832 12607754 - COPIA2-LTR_OS 6433 0.3423 (1019/2977) 1 Solo_LTR Os_TE_360818 Os_TE_360811 Chr4 12602852 12602853 + SZ-58LTR 114 0.6735 (2011/2986) 0 * * Os_TE_360806 Chr4 12599964 12599963 - ORSgTETN00200001 10994 0.0003 (1/2986) 0 * * Os_TE_360799 Chr4 12591820 12591819 + SPMLIKE 10989 0.0040 (5/1238) 0 * * Os_TE_360797 Chr4 12591261 12591262 - ORSgTEMT01600201 236 0.0152 (16/1054) 0 * * Os_TE_360794 Chr4 12590123 12590124 + TRUNCATOR 2918 0.1276 (381/2985) 0 * Os_TE_360793 Os_TE_360793 Chr4 12590117 12590116 - ORSiTERT00200154 9386 0.1311 (391/2982) 0 * Os_TE_360794 Os_TE_360791 Chr4 12588221 12588222 - ORSgTEMT01600639 228 0.4435 (970/2187) 0 * * Os_TE_360789 Chr4 12586174 12586175 - ORSgTETN00200001 10994 0.0194 (57/2941) 0 * Os_TE_360788 Os_TE_360788 Chr4 12586172 12586171 + SPMLIKE 10989 0.0085 (25/2948) 0 * Os_TE_360789 Os_TE_360786 Chr4 12583350 12585871 - ENSPM4_OS 11610 0.4097 (1222/2983) 1 Intact * Os_TE_360783 Chr4 12582112 12568260 + ATLANTYS-LTR_OS 13740 0.4166 (1237/2969) 1 Intact Os_TE_360750 Os_TE_360750 Chr4 12568260 12582112 - ATLANTYS-LTR_OS 13740 0.4084 (1221/2990) 1 Intact Os_TE_360783 Os_TE_360740 Chr4 12564063 12564064 - RETROSAT3_LTR 11537 0.0065 (19/2933) 0 * Os_TE_360739 Os_TE_360739 Chr4 12564059 12564058 + RETROSAT2LTRA 3112 0.0068 (20/2940) 0 * Os_TE_360740 Os_TE_360736 Chr4 12563432 12563279 + ORSgTEMT01701668 154 0.4041 (1203/2977) 1 Intact * Os_TE_360734 Chr4 12563086 12552376 - ENSPM3_OS 10837 0.4054 (1209/2982) 1 Intact * Os_TE_360694 Chr4 12538029 12538030 - MuDR-5_OS 17471 0.0099 (29/2916) 0 * * Os_TE_360656 Chr4 12518854 12518855 - RIREX_LTR 8828 0.0048 (5/1040) 0 * * Os_TE_360653 Chr4 12518413 12518412 + ORSiTERT00100063 7723 0.0110 (20/1824) 0 * * Os_TE_360631 Chr4 12506067 12506066 - TRUNCATOR2_LTR 2904 0.0184 (55/2986) 0 * * Os_TE_360627 Chr4 12503741 12503740 + ORSgTEMT01601591 242 0.0264 (29/1100) 0 * * Os_TE_360622 Chr4 12503017 12503018 + SZ-36LTR 5825 0.0277 (31/1121) 0 * Os_TE_360621 Os_TE_360621 Chr4 12503013 12503012 - SZ-36LTR 5825 0.0306 (32/1047) 0 * Os_TE_360622 Os_TE_360608 Chr4 12499096 12498805 - STOWAWAY11_OS 292 0.5313 (1027/1933) 1 Intact * Os_TE_360601 Chr4 12493499 12493498 + F569 228 0.0199 (21/1053) 0 * * Os_TE_360504 Chr4 12440041 12440040 - ORSgTETN00200001 10994 0.0084 (18/2152) 0 * * Os_TE_360503 Chr4 12440027 12440026 + ORSgTEMT00500498 155 0.0195 (20/1027) 0 * * Os_TE_360493 Chr4 12439261 12439262 - ORSgTEMT01600768 234 0.6573 (1724/2623) 0 * * Os_TE_360492 Chr4 12439216 12438971 + ORSgTEMT01601591 242 0.3353 (911/2717) 1 Intact * Os_TE_360490 Chr4 12438913 12438914 - ORSgTEMT00100582 334 0.0069 (20/2883) 0 * * Os_TE_360475 Chr4 12430176 12430378 + ORSgTEMT01400031 216 0.3336 (963/2887) 1 Intact * Os_TE_360463 Chr4 12428948 12428116 - ORSgTEMT02900114 314 0.4562 (995/2181) 1 Intact Os_TE_360453 Os_TE_360453 Chr4 12428116 12428948 - ORSgTEMT02900061 318 0.4761 (988/2075) 1 Intact Os_TE_360463 Os_TE_360451 Chr4 12427590 12427591 - TELIA 141 0.0323 (59/1827) 0 * * Os_TE_360447 Chr4 12421974 12421973 + CACTA-B 1103 0.6422 (1730/2694) 0 * Os_TE_360446 Os_TE_360446 Chr4 12421970 12421971 + ORSgTETN00200005 1121 0.6771 (1965/2902) 0 * Os_TE_360447 Os_TE_360440 Chr4 12420469 12411306 - ORSgTETN00200001 10994 0.3088 (843/2730) 1 Intact Os_TE_360433 Os_TE_360433 Chr4 12411303 12420470 + CACTA-B 1103 0.3366 (962/2858) 1 Intact Os_TE_360440 Os_TE_360423 Chr4 12406222 12406223 - SZ-58LTR 114 0.0010 (1/974) 0 * * Os_TE_360412 Chr4 12405466 12405467 - SZ-5LTR 1223 0.6803 (1943/2856) 0 * Os_TE_360411 Os_TE_360411 Chr4 12405464 12405463 + SZ-5LTR 1223 0.6966 (2073/2976) 0 * Os_TE_360412 Os_TE_360410 Chr4 12403806 12403805 + MERMITEB 1610 0.5872 (1307/2226) 0 * * Os_TE_360405 Chr4 12400272 12400271 - ORSgTEMT01701882 154 0.6986 (2084/2983) 0 * Os_TE_360404 Os_TE_360404 Chr4 12400269 12400270 - STOWAWAY50_OS 174 0.6900 (2021/2929) 0 * Os_TE_360405 Os_TE_360400 Chr4 12393115 12393116 - RIRE2_LTR 11306 0.0036 (10/2768) 0 * * Os_TE_360396 Chr4 12391494 12391495 - RETRO2_LTR 12874 0.3038 (906/2982) 0 * Os_TE_360395 Os_TE_360395 Chr4 12391490 12391489 + RETRO2A_LTR 12895 0.2706 (715/2642) 0 * Os_TE_360396 Os_TE_360393 Chr4 12391369 12391370 - ORSgTEMT01900052 340 0.6898 (2035/2950) 0 * Os_TE_360391 Os_TE_360391 Chr4 12391361 12391360 - TYPEH 309 0.6906 (2049/2967) 0 * Os_TE_360393 Os_TE_360390 Chr4 12391208 12391207 + STOWAWAY18_OS 216 0.6957 (2078/2987) 0 * * Os_TE_360377 Chr4 12379264 12379265 - NDNA1TNA_OS 334 0.0151 (45/2971) 0 * * Os_TE_360375 Chr4 12379150 12379149 + ORSgTETNOOT00032 218 0.0013 (4/2976) 0 * * Os_TE_360361 Chr4 12377161 12377017 - TNR2A 152 0.6270 (1846/2944) 1 Intact Os_TE_360360 Os_TE_360360 Chr4 12377015 12377160 + TNR2A 152 0.6226 (1838/2952) 1 Intact Os_TE_360361 Os_TE_360357 Chr4 12374715 12374716 - MuDR4_OS 7610 0.0104 (31/2991) 0 * * Os_TE_360284 Chr4 12345375 12345376 + ORSiTERTOOT00033 4884 0.0007 (2/2978) 0 * Os_TE_360283 Os_TE_360283 Chr4 12345372 12345371 - RETROFIT_LTR 4866 0.0007 (2/2987) 0 * Os_TE_360284 Os_TE_360282 Chr4 12344945 12343615 + ENSPM4_OS 11610 0.3106 (926/2981) 1 Intact Os_TE_360281 Os_TE_360281 Chr4 12343615 12344945 - ENSPM4_OS 11610 0.3136 (938/2991) 1 Intact Os_TE_360282 Os_TE_360264 Chr4 12335697 12335696 + STOLAB 312 0.0031 (8/2574) 0 * * Os_TE_360253 Chr4 12332955 12332954 - CLOUD-4 520 0.0004 (1/2718) 0 * * Os_TE_360250 Chr4 12332394 12332395 - COPI2_LTR 4733 0.0781 (231/2959) 0 * Os_TE_360249 Os_TE_360249 Chr4 12332390 12332389 + COPI2_LTR 4733 0.0746 (222/2975) 0 * Os_TE_360250 Os_TE_360248 Chr4 12332380 12332381 - ORSiTERT00100062 5674 0.0097 (29/2978) 0 * Os_TE_360247 Os_TE_360247 Chr4 12332376 12332375 + OSTONOR1_LTR 6440 0.0098 (28/2853) 0 * Os_TE_360248 Os_TE_360221 Chr4 12327473 12327474 + ORSiCMCM00100019 2717 0.0007 (2/2954) 0 * Os_TE_360220 Os_TE_360220 Chr4 12327469 12327468 - TRUNCATOR2_LTR 2904 0.0007 (2/2941) 0 * Os_TE_360221 Os_TE_360217 Chr4 12325101 12325102 + CRM-LTR_OS 7749 0.0020 (6/2977) 0 * * Os_TE_360201 Chr4 12320272 12320271 - TRUNCATOR 2918 0.3420 (1021/2985) 0 * Os_TE_360200 Os_TE_360200 Chr4 12320271 12320272 + TRUNCATOR 2918 0.3481 (1021/2933) 0 * Os_TE_360201 Os_TE_360196 Chr4 12319598 12319599 - SZ-22_LTR 4403 0.0007 (2/2995) 0 * Os_TE_360195 Os_TE_360195 Chr4 12319594 12319593 + ORSiTERTOOT00226 792 0.0007 (2/2994) 0 * Os_TE_360196 Os_TE_360185 Chr4 12318327 12318326 + TRUNCATOR 2918 0.0033 (10/2994) 0 * * Os_TE_360126 Chr4 12304908 12304907 + BUHUI 375 0.0010 (3/2996) 0 * * Os_TE_360097 Chr4 12298269 12298270 - RIREX_LTR 8828 0.0003 (1/2986) 0 * Os_TE_360096 Os_TE_360096 Chr4 12298265 12298264 + RIREX_LTR 8828 0.0003 (1/2983) 0 * Os_TE_360097 Os_TE_360093 Chr4 12297541 12297542 - ORSgTERT00201216 11284 0.0241 (72/2982) 0 * Os_TE_360092 Os_TE_360092 Chr4 12297537 12297536 - RIRE2_LTR 11306 0.0249 (74/2977) 0 * Os_TE_360093 Os_TE_360090 Chr4 12297166 12297167 + QINNIU 528 0.0249 (74/2977) 0 * Os_TE_360089 Os_TE_360089 Chr4 12297159 12297158 - HATOS1 3488 0.0219 (65/2970) 0 * Os_TE_360090 Os_TE_360084 Chr4 12294610 12294611 - OSTE33 1012 0.3674 (1072/2918) 0 * * Os_TE_360076 Chr4 12292153 12292152 + RIRE2_LTR 11306 0.0003 (1/2950) 0 * * Os_TE_360069 Chr4 12290844 12290843 - RIRE3_LTR 12054 0.0097 (29/2988) 0 * * Os_TE_360066 Chr4 12289315 12289316 - ORSgTETNOOT01337 247 0.2788 (828/2970) 0 * Os_TE_360065 Os_TE_360065 Chr4 12289313 12289312 - INDITTO 263 0.2825 (839/2970) 0 * Os_TE_360066 Os_TE_360059 Chr4 12288335 12288336 - COPI2_LTR 4733 0.0003 (1/2955) 0 * Os_TE_360058 Os_TE_360058 Chr4 12288331 12288330 + COPI2_LTR 4733 0.0003 (1/2949) 0 * Os_TE_360059 Os_TE_360005 Chr4 12258473 12258474 - RIRE2_LTR 11306 0.0017 (5/2975) 0 * Os_TE_360004 Os_TE_360004 Chr4 12258469 12258468 - ORSgTERT00201216 11284 0.0010 (3/2974) 0 * Os_TE_360005 Os_TE_360001 Chr4 12256344 12256345 - SC-3_LTR 5748 0.0003 (1/2977) 0 * Os_TE_360000 Os_TE_360000 Chr4 12256340 12256339 + ORSiTERTOOT00296 5553 0.0003 (1/2978) 0 * Os_TE_360001 Os_TE_359998 Chr4 12254586 12254585 - SZ-54_LTR 5203 0.0054 (16/2971) 0 * * Os_TE_359995 Chr4 12252648 12252649 + ORSiTERTOOT00034 791 0.0007 (2/2993) 0 * * Os_TE_359974 Chr4 12245687 12245688 + ORSiTERTOOT00296 5553 0.0003 (1/2982) 0 * Os_TE_359973 Os_TE_359973 Chr4 12245683 12245682 - SC-3_LTR 5748 0.0003 (1/2986) 0 * Os_TE_359974 Os_TE_359949 Chr4 12239954 12239955 + GYPSY-A_LTR 8951 0.0040 (12/2994) 0 * Os_TE_359948 Os_TE_359948 Chr4 12239950 12239949 - GYPSY-A_LTR 8951 0.0040 (12/2998) 0 * Os_TE_359949 Os_TE_359946 Chr4 12239724 12239725 - RETROSAT2LTR 12796 0.0247 (74/2998) 0 * * Os_TE_359942 Chr4 12239434 12239433 + RIRE2_LTR 11306 0.0247 (74/2997) 0 * * Os_TE_359854 Chr4 12203534 12200358 + RETROSAT2LTRA 3112 0.1002 (295/2945) 1 Intact Os_TE_359852 Os_TE_359852 Chr4 12200358 12203534 - RETROSAT3_LTR 11537 0.1057 (312/2952) 1 Solo_LTR Os_TE_359854 Os_TE_359850 Chr4 12199524 12199523 + STOWAWAY50_OS 174 0.0017 (5/2941) 0 * * Os_TE_359835 Chr4 12196650 12196649 + ENSPM4_OS 11610 0.0087 (26/2993) 0 * * Os_TE_359821 Chr4 12181344 12181343 - RETROSAT2LTRA 3112 0.0017 (5/2991) 0 * * Os_TE_359819 Chr4 12180976 12180977 + TRUNCATOR 2918 0.0054 (16/2988) 0 * * Os_TE_359814 Chr4 12179943 12179944 + COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_359813 Os_TE_359813 Chr4 12179939 12179938 - COPI2_LTR 4733 0.0003 (1/2997) 0 * Os_TE_359814 Os_TE_359812 Chr4 12179387 12179388 - RIRE3_LTR 12054 0.2241 (672/2998) 0 * Os_TE_359811 Os_TE_359811 Chr4 12179383 12179382 + RIRE3_LTR 12054 0.2225 (667/2998) 0 * Os_TE_359812 Os_TE_359807 Chr4 12178179 12178180 + RIREX_LTR 8828 0.0020 (6/2995) 0 * Os_TE_359806 Os_TE_359806 Chr4 12178175 12178174 - RIRE2_LTR 11306 0.0017 (5/2993) 0 * Os_TE_359807 Os_TE_359752 Chr4 12142279 12142278 - TYPEM 227 0.0722 (213/2951) 0 * * Os_TE_359738 Chr4 12140520 12140519 + ENSPM4_OS 11610 0.0014 (4/2961) 0 * * Os_TE_359677 Chr4 12119641 12119642 - COPIA1-LTR_OS 9292 0.0013 (1/772) -1 * * Os_TE_359662 Chr4 12114016 12114017 - RIREX_LTR 8828 0.0003 (1/2986) 0 * * Os_TE_359588 Chr4 12070581 12070582 + TRUNCATOR 2918 0.2944 (861/2925) 0 * * Os_TE_359586 Chr4 12069957 12069956 + TRUNCATOR 2918 0.0007 (2/2837) 0 * Os_TE_359585 Os_TE_359585 Chr4 12069956 12069957 - TRUNCATOR 2918 0.0014 (4/2902) 0 * Os_TE_359586 Os_TE_359584 Chr4 12069909 12069910 - MuDR4_OS 7610 0.0091 (27/2960) 0 * * Os_TE_359577 Chr4 12067939 12067938 + TRUNCATOR 2918 0.0742 (222/2993) 0 * Os_TE_359576 Os_TE_359576 Chr4 12067938 12067939 - TRUNCATOR 2918 0.0691 (206/2982) 0 * Os_TE_359577 Os_TE_359565 Chr4 12064705 12064704 - ORSgTEMT01602136 239 0.0003 (1/2933) 0 * * Os_TE_359551 Chr4 12058122 12058121 + OSTONOR1_LTR 6440 0.0061 (18/2959) 0 * * Os_TE_359540 Chr4 12054466 12054467 + RIREX_LTR 8828 0.0076 (21/2761) 0 * Os_TE_359539 Os_TE_359539 Chr4 12054462 12054461 - RIREX_LTR 8828 0.0080 (23/2876) 0 * Os_TE_359540 Os_TE_359486 Chr4 12039390 12039391 + TRUNCATOR 2918 0.3814 (875/2294) 0 * Os_TE_359485 Os_TE_359485 Chr4 12039384 12039383 - ORSiTERT00200154 9386 0.2787 (775/2781) 0 * Os_TE_359486 Os_TE_359484 Chr4 12039356 12039355 + ORSgTETNOOT00032 218 0.0117 (24/2049) 0 * * Os_TE_359442 Chr4 12025490 12025491 + ORSgTEMT01601591 242 0.0003 (1/2882) 0 * * Os_TE_359324 Chr4 11943401 11943402 + ORSiTERTOOT00226 792 0.0013 (4/2987) 0 * Os_TE_359323 Os_TE_359323 Chr4 11943397 11943396 - SZ-22_LTR 4403 0.0013 (4/2988) 0 * Os_TE_359324 Os_TE_359280 Chr4 11927630 11927631 - COPIA2-LTR_OS 6433 0.0013 (4/2980) 0 * * Os_TE_359222 Chr4 11895580 11895581 - YOUREN 286 0.0003 (1/2880) 0 * * Os_TE_359196 Chr4 11888880 11888881 + RMU2A1C 1169 0.3163 (878/2776) 0 * Os_TE_359195 Os_TE_359195 Chr4 11888873 11888872 + RMU2A1C 1169 0.3757 (1121/2984) 0 * Os_TE_359196 Os_TE_359169 Chr4 11882057 11882056 - ORSgTEMT03200001 190 0.0003 (1/2941) 0 * * Os_TE_359158 Chr4 11872816 11872817 - SC-3_LTR 5748 0.0003 (1/2980) 0 * Os_TE_359157 Os_TE_359157 Chr4 11872812 11872811 + ORSiTERTOOT00296 5553 0.0003 (1/2984) 0 * Os_TE_359158 Os_TE_359141 Chr4 11862885 11862884 + RIREX_LTR 8828 0.0025 (5/2025) 0 * * Os_TE_359136 Chr4 11862539 11862538 - NDNA1TNA_OS 334 0.0090 (27/2985) 0 * * Os_TE_359132 Chr4 11861775 11861776 - RIRE2_LTR 11306 0.0007 (2/2992) 0 * Os_TE_359131 Os_TE_359131 Chr4 11861771 11861770 + RIRE2_LTR 11306 0.0007 (2/2984) 0 * Os_TE_359132 Os_TE_359047 Chr4 11815999 11816000 - TRUNCATOR 2918 0.2865 (858/2995) 0 * * Os_TE_359033 Chr4 11801651 11801650 + STOWAWAY51_OS 246 0.0010 (3/2981) 0 * Os_TE_359032 Os_TE_359032 Chr4 11801645 11801646 + ORSgTEMT01601591 242 0.0010 (3/2974) 0 * Os_TE_359033 Os_TE_359016 Chr4 11790165 11784411 - SC-3_LTR 5748 0.3601 (1078/2994) 1 Intact Os_TE_359006 Os_TE_359006 Chr4 11784411 11790165 + SC-3_LTR 5748 0.3615 (1083/2996) 1 Intact Os_TE_359016 Os_TE_358995 Chr4 11783211 11783210 + ORSiTERTOOT00226 792 0.0003 (1/2996) 0 * * Os_TE_358981 Chr4 11777856 11777857 - SC-3_LTR 5748 0.0013 (4/2994) 0 * Os_TE_358980 Os_TE_358980 Chr4 11777852 11777851 + ORSiTERTOOT00296 5553 0.0013 (4/2988) 0 * Os_TE_358981 Os_TE_358967 Chr4 11773792 11773793 + SC-8_LTR 4951 0.0007 (2/2976) 0 * Os_TE_358966 Os_TE_358966 Chr4 11773788 11773787 - SC-8_LTR 4951 0.0003 (1/2985) 0 * Os_TE_358967 Os_TE_358953 Chr4 11769555 11769554 - TRUNCATOR 2918 0.0332 (99/2983) 0 * Os_TE_358952 Os_TE_358952 Chr4 11769554 11769555 + TRUNCATOR 2918 0.0342 (102/2986) 0 * Os_TE_358953 Os_TE_358938 Chr4 11763104 11763105 + RIREX_LTR 8828 0.6547 (1953/2983) 0 * Os_TE_358937 Os_TE_358937 Chr4 11763100 11763099 - RIRE2_LTR 11306 0.6519 (1942/2979) 0 * Os_TE_358938 Os_TE_358910 Chr4 11743929 11743930 - OLO24 345 0.0184 (52/2819) 0 * Os_TE_358909 Os_TE_358909 Chr4 11743927 11743926 + OLO24 345 0.0178 (50/2815) 0 * Os_TE_358910 Os_TE_358878 Chr4 11735587 11727491 - RIREX_LTR 8828 0.1117 (334/2989) 1 Intact Os_TE_358877 Os_TE_358877 Chr4 11727491 11735587 + RIREX_LTR 8828 0.1121 (335/2988) 1 Intact Os_TE_358878 Os_TE_358824 Chr4 11691157 11691158 - RIRE2_LTR 11306 0.0247 (74/2995) 0 * Os_TE_358823 Os_TE_358823 Chr4 11691153 11691152 - ORSgTERT00201216 11284 0.0224 (67/2989) 0 * Os_TE_358824 Os_TE_358822 Chr4 11690186 11690187 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * * Os_TE_358800 Chr4 11673730 11673731 + RIREX_LTR 8828 0.0007 (2/2999) 0 * * Os_TE_358714 Chr4 11612768 11612769 - GYPSY-A_LTR 8951 0.0245 (73/2983) 0 * * Os_TE_358703 Chr4 11600762 11600761 + ORSiTERTOOT00034 791 0.3528 (911/2582) 0 * * Os_TE_358689 Chr4 11595388 11595389 + RETRO2A_LTR 12895 0.0023 (7/2995) 0 * * Os_TE_358687 Chr4 11593933 11593934 + MPING 430 0.0003 (1/2994) 0 * Os_TE_358686 Os_TE_358686 Chr4 11593931 11593930 - MPING 430 0.0003 (1/2992) 0 * Os_TE_358687 Os_TE_358683 Chr4 11593602 11593603 + RETRO2_LTR 12874 0.0095 (28/2960) 0 * * Os_TE_358678 Chr4 11593011 11593012 + SPMLIKE 10989 0.3017 (880/2917) 0 * Os_TE_358677 Os_TE_358677 Chr4 11593009 11593008 - ORSgTETN00200001 10994 0.2832 (824/2910) 0 * Os_TE_358678 Os_TE_358676 Chr4 11592827 11592828 - HARB-1_OS 5166 0.0003 (1/2974) 0 * * Os_TE_358673 Chr4 11592686 11592685 + NDNA2TNA_OS 346 0.2140 (638/2982) 0 * * Os_TE_358641 Chr4 11589684 11589685 + RIREX_LTR 8828 0.0094 (28/2994) 0 * Os_TE_358640 Os_TE_358640 Chr4 11589680 11589679 - RIREX_LTR 8828 0.0097 (29/2990) 0 * Os_TE_358641 Os_TE_358638 Chr4 11589417 11589418 - COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * * Os_TE_358587 Chr4 11574964 11574749 + ORSgTEMT01601122 212 0.8949 (1030/1151) 1 Intact * Os_TE_358559 Chr4 11565658 11562682 + TRUNCATOR 2918 0.3234 (968/2993) 1 Intact * Os_TE_358452 Chr4 11518805 11518804 - SZ-38 8643 0.0023 (7/2979) 0 * * Os_TE_358431 Chr4 11509970 11509971 + TRUNCATOR 2918 0.6661 (1961/2944) 0 * * Os_TE_358403 Chr4 11487459 11487458 - ENSPM4_OS 11610 0.3741 (1120/2994) 0 * * Os_TE_358392 Chr4 11478791 11478790 + OSTE33 1012 0.2643 (769/2910) 0 * * Os_TE_358382 Chr4 11475592 11475591 + ORSgTETNOOT01219 231 0.6549 (1949/2976) 0 * * Os_TE_358381 Chr4 11473532 11473533 - TNR2A 152 0.1522 (456/2997) 0 * * Os_TE_358378 Chr4 11472650 11472649 + SPMLIKE 10989 0.0091 (26/2871) 0 * * Os_TE_358360 Chr4 11464773 11464774 + CRATA 4786 0.0099 (29/2936) 0 * Os_TE_358359 Os_TE_358359 Chr4 11464766 11464765 - CRATA 4786 0.0080 (24/2991) 0 * Os_TE_358360 Os_TE_358358 Chr4 11464738 11464739 - INDITTO 263 0.2794 (836/2992) 0 * Os_TE_358357 Os_TE_358357 Chr4 11464736 11464735 + INDITTO 263 0.2795 (835/2988) 0 * Os_TE_358358 Os_TE_358355 Chr4 11462100 11462101 - SZ-22_LTR 4403 0.0007 (2/2989) 0 * * Os_TE_358337 Chr4 11453784 11453785 + MUDRN1_OS 764 0.0039 (10/2541) 0 * Os_TE_358336 Os_TE_358336 Chr4 11453776 11453775 - MUDRN1_OS 764 0.0031 (9/2947) 0 * Os_TE_358337 Os_TE_358330 Chr4 11450560 11450559 + TWIFB1 3737 0.0091 (27/2966) 0 * * Os_TE_358286 Chr4 11425903 11425902 + COPI2_LTR 4733 0.0003 (1/2975) 0 * * Os_TE_358283 Chr4 11424993 11424994 - TYPEM 227 0.0007 (2/2909) 0 * Os_TE_358282 Os_TE_358282 Chr4 11424992 11424991 - ORSgTEMT02400179 221 0.0007 (2/2909) 0 * Os_TE_358283 Os_TE_358274 Chr4 11420163 11420162 + ORSiTERTOOT00226 792 0.0254 (75/2947) 0 * * Os_TE_358204 Chr4 11379418 11379419 - TRUNCATOR 2918 0.0021 (2/939) 0 * * Os_TE_358123 Chr4 11341003 11341002 - SZ-40LTR 2465 0.0031 (3/958) 0 * * Os_TE_358108 Chr4 11332476 11332477 - RETRO2_LTR 12874 0.2727 (814/2985) 0 * Os_TE_358107 Os_TE_358107 Chr4 11332472 11332471 + RETRO2_LTR 12874 0.2761 (825/2988) 0 * Os_TE_358108 Os_TE_358056 Chr4 11310623 11310622 - MIDWAY 985 0.0013 (4/2978) 0 * * Os_TE_358055 Chr4 11310363 11310364 - ORSiTERTOOT00441 4741 0.0003 (1/2992) 0 * Os_TE_358054 Os_TE_358054 Chr4 11310359 11310358 + ORSiTERTOOT00441 4741 0.0003 (1/2990) 0 * Os_TE_358055 Os_TE_358052 Chr4 11309786 11309785 - COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * * Os_TE_358031 Chr4 11297916 11297915 - TRUNCATOR 2918 0.2601 (756/2907) 0 * * Os_TE_357924 Chr4 11267512 11267513 - GYPSY-A_LTR 8951 0.0095 (28/2946) 0 * * Os_TE_357917 Chr4 11265107 11265108 - RIREX_LTR 8828 0.0003 (1/2997) 0 * Os_TE_357916 Os_TE_357916 Chr4 11265103 11265102 + RIREX_LTR 8828 0.0003 (1/2996) 0 * Os_TE_357917 Os_TE_357915 Chr4 11265065 11265066 - ORSiTERTOOT00074 4935 0.0003 (1/2995) 0 * Os_TE_357914 Os_TE_357914 Chr4 11265061 11265060 + ORSiTERTOOT00074 4935 0.0003 (1/2997) 0 * Os_TE_357915 Os_TE_357874 Chr4 11247532 11247531 + LTR10_OS 202 0.0004 (1/2708) 0 * * Os_TE_357872 Chr4 11247481 11247480 - TRUNCATOR2_LTR 2904 0.0024 (6/2533) 0 * * Os_TE_357849 Chr4 11235407 11231530 - RETROSAT4_LTR 13504 0.1365 (404/2960) 1 Solo_LTR * Os_TE_357842 Chr4 11230583 11230582 - TRUNCATOR 2918 0.3852 (1134/2944) 0 * * Os_TE_357790 Chr4 11216295 11216296 - RIRE3_LTR 12054 0.0003 (1/2977) 0 * * Os_TE_357736 Chr4 11181939 11181940 + SPMLIKE 10989 0.1893 (560/2959) 0 * Os_TE_357735 Os_TE_357735 Chr4 11181937 11181936 - ORSgTETN00200001 10994 0.1708 (496/2904) 0 * Os_TE_357736 Os_TE_357733 Chr4 11180736 11180735 - TYPEM 227 0.0003 (1/2981) 0 * * Os_TE_357732 Chr4 11180734 11180735 - RIREX_LTR 8828 0.0013 (4/2971) 0 * Os_TE_357731 Os_TE_357731 Chr4 11180730 11180729 + RIREX_LTR 8828 0.0013 (4/2977) 0 * Os_TE_357732 Os_TE_357730 Chr4 11180710 11180711 - COPIA2-LTR_OS 6433 0.0251 (75/2988) 0 * Os_TE_357729 Os_TE_357729 Chr4 11180706 11180705 + COPIA2-LTR_OS 6433 0.0238 (71/2986) 0 * Os_TE_357730 Os_TE_357728 Chr4 11180079 11180080 - NDNA1TNA_OS 334 0.2705 (804/2972) 0 * Os_TE_357727 Os_TE_357727 Chr4 11180078 11180077 + ORSgTEMT00101341 314 0.2772 (827/2983) 0 * Os_TE_357728 Os_TE_357633 Chr4 11132648 11132647 + CACTA-H 1152 0.1752 (516/2945) 0 * * Os_TE_357621 Chr4 11128018 11128019 - MIDWAY 985 0.0017 (5/2946) 0 * * Os_TE_357617 Chr4 11121275 11122239 + SZ-9LTR 965 0.1426 (418/2931) 1 Intact * Os_TE_357589 Chr4 11110796 11110797 + ORSiTERTOOT00226 792 0.0009 (2/2151) 0 * Os_TE_357588 Os_TE_357588 Chr4 11110792 11110791 - SZ-22_LTR 4403 0.0009 (2/2145) 0 * Os_TE_357589 Os_TE_357587 Chr4 11109040 11109041 - RIREX_LTR 8828 0.0126 (28/2218) 0 * * Os_TE_357583 Chr4 11107369 11107370 + CRM-LTR_OS 7749 0.5452 (1194/2190) 0 * * Os_TE_357577 Chr4 11106333 11106334 + TRUNCATOR 2918 0.5304 (1170/2206) 0 * * Os_TE_357543 Chr4 11089913 11089912 + ORSiCMCM00100019 2717 0.5168 (1105/2138) 0 * * Os_TE_357521 Chr4 11063106 11063107 + TYPEU1 380 0.0239 (71/2974) 0 * Os_TE_357520 Os_TE_357520 Chr4 11063099 11063098 - TYPEU1 380 0.0252 (75/2975) 0 * Os_TE_357521 Os_TE_357519 Chr4 11062267 11062266 - COPIA2-LTR_OS 6433 0.0003 (1/2964) 0 * * Os_TE_357518 Chr4 11062261 11062262 + MuDR-5_OS 17471 0.3968 (1180/2974) 0 * Os_TE_357517 Os_TE_357517 Chr4 11062253 11062252 - MuDR-5_OS 17471 0.3916 (1160/2962) 0 * Os_TE_357518 Os_TE_357516 Chr4 11060763 11060764 + RIREX_LTR 8828 0.0003 (1/2969) 0 * Os_TE_357515 Os_TE_357515 Chr4 11060759 11060758 - RIREX_LTR 8828 0.0003 (1/2969) 0 * Os_TE_357516 Os_TE_357502 Chr4 11053957 11053958 - TRUNCATOR2_LTR 2904 0.5765 (1191/2066) 0 * * Os_TE_357498 Chr4 11052910 11052911 + ORSiTERTOOT00028 8600 0.3876 (1140/2941) 0 * * Os_TE_357445 Chr4 11034995 11034996 - ORSgTETNOOT00908 242 0.3977 (1176/2957) 0 * * Os_TE_357435 Chr4 11030055 11030056 + SC-8_LTR 4951 0.0003 (1/2986) 0 * Os_TE_357434 Os_TE_357434 Chr4 11030051 11030050 - SC-8_LTR 4951 0.0003 (1/2979) 0 * Os_TE_357435 Os_TE_357370 Chr4 11005566 11005567 - COPIA2-LTR_OS 6433 0.0004 (1/2448) 0 * * Os_TE_357282 Chr4 10962076 10962077 + ORSiTERTOOT00226 792 0.0003 (1/2876) 0 * * Os_TE_357258 Chr4 10953811 10953812 - ORSgTERT00201216 11284 0.1471 (437/2970) 0 * Os_TE_357257 Os_TE_357257 Chr4 10953807 10953806 - RIRE2_LTR 11306 0.1477 (440/2979) 0 * Os_TE_357258 Os_TE_357251 Chr4 10950068 10953033 + TRUNCATOR 2918 0.8261 (2428/2939) 1 Intact * Os_TE_357234 Chr4 10941558 10941559 + ORSiTETNOOT00107 906 0.0254 (75/2958) 0 * * Os_TE_357230 Chr4 10940545 10940544 + TRUNCATOR 2918 0.3931 (1166/2966) 0 * * Os_TE_357219 Chr4 10935470 10935471 - INDITTO 263 0.0033 (10/2988) 0 * Os_TE_357218 Os_TE_357218 Chr4 10935468 10935467 + INDITTO 263 0.0037 (11/2988) 0 * Os_TE_357219 Os_TE_357217 Chr4 10935321 10935320 - COPIA2-LTR_OS 6433 0.0003 (1/2975) 0 * * Os_TE_357087 Chr4 10882158 10882157 - TRUNCATOR2_LTR 2904 0.0043 (13/2992) 0 * * Os_TE_357064 Chr4 10872543 10872544 - RIRE3A_LTR 10580 0.0003 (1/2992) 0 * * Os_TE_357035 Chr4 10860191 10852734 - RIREX_LTR 8828 0.1351 (405/2998) 1 Intact Os_TE_357031 Os_TE_357031 Chr4 10852734 10860191 + RIREX_LTR 8828 0.1362 (408/2995) 1 Intact Os_TE_357035 Os_TE_357015 Chr4 10849000 10852075 - RIRE3_LTR 12054 0.1402 (419/2989) 1 Solo_LTR * Os_TE_356848 Chr4 10779414 10779413 + ORSiTERTOOT00097 759 0.0007 (1/1529) -1 * * Os_TE_356801 Chr4 10764633 10764634 - TRUNCATOR2_LTR 2904 0.0003 (1/2871) 0 * * Os_TE_356773 Chr4 10756521 10756520 + ORSiTEMT00100001 540 0.0003 (1/2971) 0 * * Os_TE_356772 Chr4 10755292 10755293 - RIRE3A_LTR 10580 0.0003 (1/2978) 0 * Os_TE_356771 Os_TE_356771 Chr4 10755288 10755287 + ORSiTERTOOT00027 10853 0.0003 (1/2970) 0 * Os_TE_356772 Os_TE_356768 Chr4 10751386 10751385 + TRUNCATOR 2918 0.0021 (6/2883) 0 * * Os_TE_356753 Chr4 10746488 10746487 - TRUNCATOR 2918 0.6426 (1823/2837) 0 * Os_TE_356752 Os_TE_356752 Chr4 10746487 10746488 + TRUNCATOR 2918 0.6469 (1856/2869) 0 * Os_TE_356753 Os_TE_356528 Chr4 10678435 10678434 - ORSiTERT00200154 9386 0.6563 (1944/2962) 0 * * Os_TE_356475 Chr4 10658657 10658656 - RIREX_LTR 8828 0.0090 (27/2993) 0 * * Os_TE_356396 Chr4 10633898 10633899 + ORSiTERTOOT00226 792 0.0003 (1/2983) 0 * Os_TE_356395 Os_TE_356395 Chr4 10633894 10633893 - SZ-22_LTR 4403 0.0003 (1/2980) 0 * Os_TE_356396 Os_TE_356381 Chr4 10630965 10630966 - CASTAWAY 364 0.0007 (2/2865) 0 * * Os_TE_356369 Chr4 10629431 10629432 + MuDR2_OS 6770 0.0037 (11/2993) 0 * * Os_TE_356358 Chr4 10622457 10622458 - SZ-22_LTR 4403 0.0087 (26/2987) 0 * Os_TE_356357 Os_TE_356357 Chr4 10622453 10622452 + ORSiTERTOOT00226 792 0.0087 (26/2988) 0 * Os_TE_356358 Os_TE_356356 Chr4 10621712 10621713 + SC-4_LTR 5218 0.0003 (1/2992) 0 * Os_TE_356355 Os_TE_356355 Chr4 10621708 10621707 - SC-4_LTR 5218 0.0003 (1/2991) 0 * Os_TE_356356 Os_TE_356061 Chr4 10472493 10472494 + MuDR3_OS 8604 0.6782 (1977/2915) 0 * * Os_TE_356040 Chr4 10458256 10458257 + RIRE2_LTR 11306 0.0003 (1/2978) 0 * * Os_TE_355706 Chr4 10328637 10328636 - SZ-22_LTR 4403 0.0019 (3/1540) 0 * * Os_TE_355677 Chr4 10322934 10322933 - ORSgTERT00201216 11284 0.1538 (443/2881) 0 * * Os_TE_355676 Chr4 10322259 10322260 - RIRE3_LTR 12054 0.0262 (75/2866) 0 * Os_TE_355675 Os_TE_355675 Chr4 10322255 10322254 + RIRE3_LTR 12054 0.0221 (63/2851) 0 * Os_TE_355676 Os_TE_355673 Chr4 10319592 10319593 - SZ-22_LTR 4403 0.0003 (1/2876) 0 * Os_TE_355672 Os_TE_355672 Chr4 10319588 10319587 + ORSiTERTOOT00226 792 0.0003 (1/2876) 0 * Os_TE_355673 Os_TE_355666 Chr4 10316730 10316731 + COPIA2-LTR_OS 6433 0.0003 (1/2881) 0 * Os_TE_355665 Os_TE_355665 Chr4 10316726 10316725 - COPIA2-LTR_OS 6433 0.0003 (1/2879) 0 * Os_TE_355666 Os_TE_355558 Chr4 10268467 10268468 + ORSiTERTOOT00226 792 0.0011 (1/872) 0 * * Os_TE_355556 Chr4 10268427 10268428 - SZ-22_LTR 4403 0.0012 (1/842) 0 * * Os_TE_355498 Chr4 10246121 10246120 + ORSiTERTOOT00226 792 0.0133 (13/979) 0 * * Os_TE_355451 Chr4 10221467 10221468 - SZ-22_LTR 4403 0.0036 (3/824) 0 * * Os_TE_355371 Chr4 10192024 10192023 - SZ-22_LTR 4403 0.0008 (1/1222) 0 * * Os_TE_355300 Chr4 10158635 10158634 + ORSiTERTOOT00226 792 0.0004 (1/2672) 0 * Os_TE_355299 Os_TE_355299 Chr4 10158632 10158633 - SZ-22_LTR 4403 0.0025 (1/397) 0 * Os_TE_355300 Os_TE_355292 Chr4 10147046 10147047 + ORSgTETNOOT00032 218 0.0185 (8/433) 0 * * Os_TE_355286 Chr4 10144694 10144695 - SZ-22_LTR 4403 0.0212 (9/425) 0 * * Os_TE_355270 Chr4 10138465 10138466 + ORSiTERTOOT00226 792 0.0063 (6/960) 0 * * Os_TE_355102 Chr4 10091164 10091163 + ORSiTERTOOT00034 791 0.0003 (1/2993) 0 * * Os_TE_355068 Chr4 10078992 10079821 - SZ-22_LTR 4403 0.1411 (420/2977) 1 Solo_LTR * Os_TE_355058 Chr4 10077324 10077325 + TRUNCATOR 2918 0.6855 (2047/2986) 0 * Os_TE_355057 Os_TE_355057 Chr4 10077318 10077317 - ORSiTERT00200154 9386 0.6765 (2001/2958) 0 * Os_TE_355058 Os_TE_354986 Chr4 10052148 10052149 - GYPSY-A_LTR 8951 0.2461 (569/2312) 0 * * Os_TE_354969 Chr4 10047718 10047717 + TRUNCATOR2_LTR 2904 0.0715 (213/2979) 0 * * Os_TE_354931 Chr4 10032522 10032523 - SZ-22_LTR 4403 0.0003 (1/2988) 0 * Os_TE_354930 Os_TE_354930 Chr4 10032518 10032517 + ORSiTERTOOT00226 792 0.0003 (1/2972) 0 * Os_TE_354931 Os_TE_354846 Chr4 9994360 9994361 + COPIA2-LTR_OS 6433 0.0003 (1/2968) 0 * Os_TE_354845 Os_TE_354845 Chr4 9994356 9994355 - COPIA2-LTR_OS 6433 0.0003 (1/2973) 0 * Os_TE_354846 Os_TE_354839 Chr4 9991739 9991738 + ORSiTERTOOT00226 792 0.0004 (1/2510) 0 * * Os_TE_354748 Chr4 9954779 9954778 + SC-8_LTR 4951 0.0037 (11/2960) 0 * * Os_TE_354741 Chr4 9948036 9948037 + ORSiTERTOOT00296 5553 0.0003 (1/2987) 0 * Os_TE_354740 Os_TE_354740 Chr4 9948032 9948031 - SC-3_LTR 5748 0.0003 (1/2981) 0 * Os_TE_354741 Os_TE_354653 Chr4 9918705 9918706 + ORSiTERTOOT00226 792 0.0003 (1/2984) 0 * Os_TE_354652 Os_TE_354652 Chr4 9918701 9918700 + ORSiTERTOOT00226 792 0.0003 (1/2987) 0 * Os_TE_354653 Os_TE_354651 Chr4 9918653 9918654 - SZ-22_LTR 4403 0.0020 (6/2989) 0 * Os_TE_354650 Os_TE_354650 Chr4 9918649 9918648 + ORSiTERTOOT00034 791 0.0020 (6/2991) 0 * Os_TE_354651 Os_TE_354638 Chr4 9904982 9904983 + ORSiTERTOOT00296 5553 0.0003 (1/2971) 0 * Os_TE_354637 Os_TE_354637 Chr4 9904978 9904977 - SC-3_LTR 5748 0.0003 (1/2962) 0 * Os_TE_354638 Os_TE_354626 Chr4 9896794 9896795 + ORSiTERTOOT00296 5553 0.0007 (2/2997) 0 * * Os_TE_354608 Chr4 9892128 9892129 + ORSiTERTOOT00226 792 0.0085 (24/2835) 0 * Os_TE_354607 Os_TE_354607 Chr4 9892124 9892123 - SZ-22_LTR 4403 0.0088 (25/2825) 0 * Os_TE_354608 Os_TE_354587 Chr4 9884680 9884679 + ORSiTERTOOT00226 792 0.0003 (1/2995) 0 * * Os_TE_354218 Chr4 9754718 9753928 + ORSiTERTOOT00034 791 0.4265 (432/1013) 1 Intact Os_TE_354216 Os_TE_354216 Chr4 9750313 9754718 - SZ-22_LTR 4403 0.4153 (417/1004) 1 Intact Os_TE_354218 Os_TE_354163 Chr4 9720294 9740041 - MuDR3_OS 8604 0.1351 (391/2895) 1 Intact * Os_TE_354103 Chr4 9678639 9678638 + TWIFB1 3737 0.0003 (1/2905) 0 * * Os_TE_354098 Chr4 9677940 9677939 - SZ-22_LTR 4403 0.0003 (1/2992) 0 * * Os_TE_354045 Chr4 9648021 9648022 - SZ-22_LTR 4403 0.0010 (3/2953) 0 * Os_TE_354044 Os_TE_354044 Chr4 9648017 9648016 + ORSiTERTOOT00226 792 0.0010 (3/2957) 0 * Os_TE_354045 Os_TE_353976 Chr4 9625844 9625843 - SZ-22_LTR 4403 0.0003 (1/2995) 0 * * Os_TE_353887 Chr4 9591132 9591133 + ORSiTERTOOT00226 792 0.0019 (2/1040) 0 * * Os_TE_353854 Chr4 9569033 9569032 - ORSgTEMT01601208 238 0.4976 (928/1865) 0 * Os_TE_353853 Os_TE_353853 Chr4 9569030 9569031 + ORSgTEMT01601488 239 0.4759 (968/2034) 0 * Os_TE_353854 Os_TE_353852 Chr4 9568382 9568383 + RIRE2_LTR 11306 0.0052 (11/2135) 0 * Os_TE_353851 Os_TE_353851 Chr4 9568378 9568377 - RIRE2_LTR 11306 0.0055 (11/2002) 0 * Os_TE_353852 Os_TE_353588 Chr4 9427502 9427503 - RIRE3_LTR 12054 0.0020 (5/2449) 0 * * Os_TE_353564 Chr4 9422586 9422587 + ORSiCMCM00100019 2717 0.0008 (2/2478) 0 * Os_TE_353563 Os_TE_353563 Chr4 9422583 9422582 - TRUNCATOR2_LTR 2904 0.0008 (2/2505) 0 * Os_TE_353564 Os_TE_353484 Chr4 9395281 9395280 + ORSiTERTOOT00226 792 0.0003 (1/2990) 0 * * Os_TE_353482 Chr4 9395239 9395238 + ORSiTERTOOT00226 792 0.0003 (1/2998) 0 * * Os_TE_353481 Chr4 9394787 9394786 - OSTE30 529 0.0013 (4/2993) 0 * * Os_TE_353401 Chr4 9364649 9361864 - TRUNCATOR 2918 0.1418 (408/2878) 1 Intact Os_TE_353396 Os_TE_353396 Chr4 9361864 9364530 - TRUNCATOR2_LTR 2904 0.1479 (431/2914) 1 Intact Os_TE_353401 Os_TE_353380 Chr4 9337763 9337764 + ORSiTERTOOT00296 5553 0.0003 (1/2996) 0 * Os_TE_353379 Os_TE_353379 Chr4 9337759 9337758 - SC-3_LTR 5748 0.0003 (1/2997) 0 * Os_TE_353380 Os_TE_353378 Chr4 9336829 9336830 + F1275 157 0.0245 (73/2974) 0 * * Os_TE_353370 Chr4 9333757 9333756 + COPIA2-LTR_OS 6433 0.0007 (2/2685) 0 * * Os_TE_353303 Chr4 9299434 9298995 + RIREX_LTR 8828 0.1367 (407/2978) 1 Solo_LTR Os_TE_353301 Os_TE_353301 Chr4 9298996 9299436 - RIREX_LTR 8828 0.1375 (408/2968) 1 Solo_LTR Os_TE_353303 Os_TE_353279 Chr4 9292070 9292071 + SPMLIKE 10989 0.0234 (70/2996) 0 * Os_TE_353278 Os_TE_353278 Chr4 9292068 9292067 - ORSgTETN00200001 10994 0.0234 (70/2993) 0 * Os_TE_353279 Os_TE_353275 Chr4 9291210 9291209 + RIREX_LTR 8828 0.0003 (1/2948) 0 * * Os_TE_353267 Chr4 9288800 9288801 + ORSiTERTOOT00226 792 0.0003 (1/2973) 0 * Os_TE_353266 Os_TE_353266 Chr4 9288796 9288795 - SZ-22_LTR 4403 0.0003 (1/2981) 0 * Os_TE_353267 Os_TE_353257 Chr4 9283071 9283072 - CASTAWAY 364 0.6410 (1898/2961) 0 * * Os_TE_353250 Chr4 9278660 9278659 + ORSiTERT00200069 6058 0.0003 (1/2990) 0 * * Os_TE_353239 Chr4 9275194 9275193 - TRUNCATOR 2918 0.6784 (2019/2976) 0 * Os_TE_353238 Os_TE_353238 Chr4 9275193 9275194 + TRUNCATOR 2918 0.6812 (2036/2989) 0 * Os_TE_353239 Os_TE_353235 Chr4 9274908 9274909 + CRM-LTR_OS 7749 0.6840 (2041/2984) 0 * Os_TE_353234 Os_TE_353234 Chr4 9274904 9274903 - CRM-LTR_OS 7749 0.6843 (2048/2993) 0 * Os_TE_353235 Os_TE_353092 Chr4 9197886 9197887 + ORSiTERTOOT00226 792 0.0024 (1/416) 0 * * Os_TE_352968 Chr4 9039587 9039586 + ORSiTERTOOT00226 792 0.0024 (7/2962) 0 * * Os_TE_352966 Chr4 9039402 9039401 + ORSiCMCM00100019 2717 0.6801 (2020/2970) 0 * * Os_TE_352764 Chr4 8957801 8980731 + RIRE3_LTR 12054 0.7024 (1270/1808) 1 Intact * Os_TE_352759 Chr4 8955426 8955427 - F569 228 0.0133 (33/2474) 0 * Os_TE_352758 Os_TE_352758 Chr4 8955424 8955423 + F569 228 0.0177 (52/2942) 0 * Os_TE_352759 Os_TE_352757 Chr4 8955399 8954608 + ORSiTERTOOT00034 791 0.1435 (419/2919) 1 Intact * Os_TE_352745 Chr4 8947921 8947922 - STOWAWAY51_OS 246 0.0182 (54/2972) 0 * * Os_TE_352744 Chr4 8947887 8947886 + OSTE15 1168 0.1866 (556/2980) 0 * * Os_TE_352630 Chr4 8879869 8879870 - RIRE2_LTR 11306 0.3335 (826/2477) 0 * Os_TE_352629 Os_TE_352629 Chr4 8879865 8879864 + RIRE2_LTR 11306 0.3356 (832/2479) 0 * Os_TE_352630 Os_TE_352624 Chr4 8878623 8878624 + ORSiTERTOOT00097 759 0.1893 (566/2990) 0 * Os_TE_352623 Os_TE_352623 Chr4 8878619 8878618 - SZ-22_LTR 4403 0.1908 (570/2987) 0 * Os_TE_352624 Os_TE_352621 Chr4 8878198 8878199 + ORSiTERTOOT00226 792 0.0003 (1/2953) 0 * * Os_TE_352616 Chr4 8876504 8876505 + CRM-LTR_OS 7749 0.0004 (1/2697) 0 * Os_TE_352615 Os_TE_352615 Chr4 8876500 8876499 - CRM-LTR_OS 7749 0.0004 (1/2689) 0 * Os_TE_352616 Os_TE_352595 Chr4 8872878 8870065 + TRUNCATOR 2918 0.1511 (420/2780) 1 Intact Os_TE_352586 Os_TE_352586 Chr4 8870060 8872878 - TRUNCATOR 2918 0.1137 (314/2761) 1 Intact Os_TE_352595 Os_TE_352368 Chr4 8780439 8780440 - SZ-22_LTR 4403 0.0017 (5/2956) 0 * * Os_TE_352341 Chr4 8765360 8765361 + ORSiTERTOOT00226 792 0.0003 (1/2996) 0 * * Os_TE_352305 Chr4 8755429 8755430 - NDNA1TNA_OS 334 0.0037 (11/2941) 0 * Os_TE_352304 Os_TE_352304 Chr4 8755427 8755426 + NDNA1TNA_OS 334 0.0038 (11/2927) 0 * Os_TE_352305 Os_TE_352298 Chr4 8754660 8726474 - ENSPM5_OS 9581 0.1341 (399/2976) 1 Intact Os_TE_352285 Os_TE_352285 Chr4 8726474 8754660 + ENSPM6_OS 9815 0.1254 (370/2951) 1 Intact Os_TE_352298 Os_TE_352264 Chr4 8720271 8720272 - RIREX_LTR 8828 0.0097 (28/2897) 0 * * Os_TE_352252 Chr4 8716412 8716413 - RIREX_LTR 8828 0.0007 (2/2992) 0 * Os_TE_352251 Os_TE_352251 Chr4 8716408 8716407 + RIREX_LTR 8828 0.0007 (2/2994) 0 * Os_TE_352252 Os_TE_352241 Chr4 8711929 8711930 + RIRE3A_LTR 10580 0.0211 (59/2794) 0 * Os_TE_352240 Os_TE_352240 Chr4 8711925 8711924 - RIRE3A_LTR 10580 0.0208 (58/2795) 0 * Os_TE_352241 Os_TE_352234 Chr4 8708759 8708760 + TRUNCATOR 2918 0.5652 (1253/2217) 0 * * Os_TE_352233 Chr4 8708227 8708228 + TRUNCATOR 2918 0.6911 (1967/2846) 0 * * Os_TE_352231 Chr4 8707673 8707674 - RIRE2_LTR 11306 0.0003 (1/2979) 0 * * Os_TE_352229 Chr4 8707443 8707444 - SZ-62LTR 3649 0.0017 (5/2967) 0 * Os_TE_352228 Os_TE_352228 Chr4 8707439 8707438 + SZ-62LTR 3649 0.0013 (4/2966) 0 * Os_TE_352229 Os_TE_352221 Chr4 8706255 8706256 + TRUNCATOR 2918 0.6813 (2024/2971) 0 * * Os_TE_352217 Chr4 8705815 8705816 + COPIA2-LTR_OS 6433 0.0007 (2/2992) 0 * Os_TE_352216 Os_TE_352216 Chr4 8705811 8705810 - COPIA2-LTR_OS 6433 0.0007 (2/2992) 0 * Os_TE_352217 Os_TE_352215 Chr4 8705455 8705454 - TRUNCATOR 2918 0.6815 (2028/2976) 0 * * Os_TE_352214 Chr4 8705454 8705455 + TRUNCATOR 2918 0.6832 (2042/2989) 0 * Os_TE_352213 Os_TE_352213 Chr4 8705448 8705447 - ORSiTERT00200154 9386 0.6788 (2008/2958) 0 * Os_TE_352214 Os_TE_352185 Chr4 8683385 8683384 - RETROSAT2LTR 12796 0.0060 (18/2992) 0 * * Os_TE_352182 Chr4 8681588 8681589 + ORSiTERTOOT00226 792 0.0003 (1/2997) 0 * * Os_TE_352034 Chr4 8639822 8639823 - ORSgTETNOOT01337 247 0.6887 (2049/2975) 0 * Os_TE_352033 Os_TE_352033 Chr4 8639820 8639819 - INDITTO 263 0.6827 (1992/2918) 0 * Os_TE_352034 Os_TE_352032 Chr4 8639462 8639463 - HARB-1_OS 5166 0.0003 (1/2990) 0 * * Os_TE_352016 Chr4 8631232 8619194 + TRUNCATOR 2918 0.1357 (401/2954) 1 Intact Os_TE_351994 Os_TE_351994 Chr4 8619189 8631232 - TRUNCATOR 2918 0.1147 (333/2904) 1 Intact Os_TE_352016 Os_TE_351981 Chr4 8616711 8616710 - ENSPM4_OS 11610 0.2780 (833/2996) 0 * * Os_TE_351945 Chr4 8600381 8600382 + RIREX_LTR 8828 0.0007 (2/2980) 0 * Os_TE_351944 Os_TE_351944 Chr4 8600377 8600376 - RIREX_LTR 8828 0.0007 (2/2981) 0 * Os_TE_351945 Os_TE_351925 Chr4 8593955 8593956 - CRM-LTR_OS 7749 0.0003 (1/2987) 0 * Os_TE_351924 Os_TE_351924 Chr4 8593951 8593950 + CRM-LTR_OS 7749 0.0003 (1/2983) 0 * Os_TE_351925 Os_TE_351918 Chr4 8588781 8588780 + TWIFBIG 3567 0.0003 (1/2881) 0 * * Os_TE_351913 Chr4 8583813 8583814 + ORSiTERTOOT00296 5553 0.0003 (1/2981) 0 * Os_TE_351912 Os_TE_351912 Chr4 8583809 8583808 - SC-3_LTR 5748 0.0003 (1/2975) 0 * Os_TE_351913 Os_TE_351888 Chr4 8570442 8570441 - RILN8_OS 5085 0.0256 (11/430) 0 * * Os_TE_351843 Chr4 8553945 8553946 + TRUNCATOR 2918 0.0037 (11/2992) 0 * * Os_TE_351820 Chr4 8541649 8541648 - TRUNCATOR2_LTR 2904 0.0003 (1/2993) 0 * * Os_TE_351819 Chr4 8541350 8541349 - TRUNCATOR 2918 0.6769 (2013/2974) 0 * Os_TE_351818 Os_TE_351818 Chr4 8541349 8541350 + TRUNCATOR 2918 0.6835 (2045/2992) 0 * Os_TE_351819 Os_TE_351802 Chr4 8533196 8533197 - OSTONOR1_LTR 6440 0.0010 (3/2981) 0 * Os_TE_351801 Os_TE_351801 Chr4 8533192 8533191 + OSTONOR1_LTR 6440 0.0010 (3/2983) 0 * Os_TE_351802 Os_TE_351795 Chr4 8531736 8531737 + COPIA2-LTR_OS 6433 0.0003 (1/2964) 0 * Os_TE_351794 Os_TE_351794 Chr4 8531732 8531731 - COPIA2-LTR_OS 6433 0.0003 (1/2960) 0 * Os_TE_351795 Os_TE_351793 Chr4 8530810 8530809 + ORSgTEMT01601934 207 0.6721 (1912/2845) 0 * Os_TE_351792 Os_TE_351792 Chr4 8530807 8530808 + ORSgTEMT01601934 207 0.6573 (1801/2740) 0 * Os_TE_351793 Os_TE_351790 Chr4 8530700 8530701 + AMYLTP 383 0.0018 (5/2793) 0 * Os_TE_351789 Os_TE_351789 Chr4 8530692 8530691 - AMYLTP 383 0.0014 (4/2789) 0 * Os_TE_351790 Os_TE_351761 Chr4 8523707 8523412 - ORSgTEMT00101494 326 0.3355 (963/2870) 1 Intact Os_TE_351759 Os_TE_351759 Chr4 8523395 8523704 + NDNA1TNA_OS 334 0.3188 (941/2952) 1 Intact Os_TE_351761 Os_TE_351748 Chr4 8513209 8513414 - COWARD 200 0.3284 (971/2957) 1 Intact * Os_TE_351734 Chr4 8511759 8511760 + UNIQUE 158 0.0003 (1/2978) 0 * * Os_TE_351733 Chr4 8511475 8511476 + GYPSY-B_LTR 7068 0.6862 (2051/2989) 0 * Os_TE_351732 Os_TE_351732 Chr4 8511471 8511470 - GYPSY-B_LTR 7068 0.6868 (2057/2995) 0 * Os_TE_351733 Os_TE_351727 Chr4 8506238 8507318 - MIDWAY 985 0.3156 (937/2969) 1 Intact * Os_TE_351704 Chr4 8500743 8500744 + COPIA3-LTR_OS 5061 0.0091 (27/2977) 0 * * Os_TE_351661 Chr4 8480002 8480187 - SNAP-OL3 189 0.6830 (2038/2984) 1 Intact * Os_TE_351660 Chr4 8479904 8479905 + SZ-62LTR 3649 0.3190 (951/2981) 0 * Os_TE_351659 Os_TE_351659 Chr4 8479900 8479899 - SZ-62LTR 3649 0.3255 (973/2989) 0 * Os_TE_351660 Os_TE_351653 Chr4 8478170 8478171 + COPIA1-LTR_OS 9292 0.3377 (1009/2988) 0 * * Os_TE_351638 Chr4 8471324 8464896 + OSTONOR1_LTR 6440 0.3223 (962/2985) 1 Intact * Os_TE_351622 Chr4 8461072 8461073 + RIREX_LTR 8828 0.0005 (1/2026) 0 * * Os_TE_351610 Chr4 8453417 8453416 + HELITRON8_OS 8831 0.3716 (835/2247) 0 * * Os_TE_351609 Chr4 8453166 8447121 + COPIA2-LTR_OS 6433 0.6365 (1611/2531) 1 Intact * Os_TE_351592 Chr4 8446651 8445687 + COPIA2-LTR_OS 6433 0.1755 (408/2325) 1 Solo_LTR Os_TE_351591 Os_TE_351591 Chr4 8445689 8446651 - COPIA2-LTR_OS 6433 0.2117 (538/2541) 1 Solo_LTR Os_TE_351592 Os_TE_351590 Chr4 8445137 8445136 + ORSgTETNOOT00908 242 0.4259 (1097/2576) 0 * * Os_TE_351588 Chr4 8444487 8441059 + ORSiTERTOOT00028 8600 0.3138 (508/1619) 1 Intact Os_TE_351583 Os_TE_351583 Chr4 8441059 8444487 - TRUNCATOR2_LTR 2904 0.3223 (527/1635) 1 Intact Os_TE_351588 Os_TE_351570 Chr4 8429185 8429184 - TRUNCATOR 2918 0.0381 (76/1993) 0 * * Os_TE_351563 Chr4 8425568 8425567 + TRUNCATOR 2918 0.0358 (106/2958) 0 * * Os_TE_351560 Chr4 8424676 8424677 - RIREX_LTR 8828 0.0037 (11/2996) 0 * Os_TE_351559 Os_TE_351559 Chr4 8424672 8424671 + RIREX_LTR 8828 0.0037 (11/2999) 0 * Os_TE_351560 Os_TE_351558 Chr4 8423765 8423766 - ORSgTETN00200001 10994 0.0533 (156/2926) 0 * Os_TE_351557 Os_TE_351557 Chr4 8423763 8423762 + SPMLIKE 10989 0.0692 (206/2977) 0 * Os_TE_351558 Os_TE_351554 Chr4 8421878 8421877 + ORSgTEMT01400031 216 0.8515 (2442/2868) 0 * Os_TE_351553 Os_TE_351553 Chr4 8421874 8421875 - ORSgTEMT01400022 212 0.8521 (2448/2873) 0 * Os_TE_351554 Os_TE_351550 Chr4 8421431 8421430 - SEVERIN-2 1952 0.0037 (11/2964) 0 * * Os_TE_351549 Chr4 8421161 8412937 + RIREX_LTR 8828 0.1436 (422/2938) 1 Intact Os_TE_351544 Os_TE_351544 Chr4 8412937 8421161 - RIREX_LTR 8828 0.1432 (423/2953) 1 Intact Os_TE_351549 Os_TE_351516 Chr4 8394272 8394617 - OLO24 345 0.1544 (448/2901) 1 Intact * Os_TE_351411 Chr4 8348730 8348731 - ORSiTERT00200154 9386 0.0015 (4/2616) 0 * * Os_TE_351367 Chr4 8333387 8327593 + ORSiTERTOOT00212 5795 0.2716 (415/1528) 0.6 Intact * Os_TE_351330 Chr4 8320467 8320466 - ORSgTEMT00901071 248 0.8478 (2467/2910) 0 * * Os_TE_351325 Chr4 8319777 8319967 + COWARD-3 221 0.1619 (454/2804) 1 Intact * Os_TE_351303 Chr4 8316542 8316543 + OSTE33 1012 0.0034 (10/2969) 0 * Os_TE_351302 Os_TE_351302 Chr4 8316533 8316532 + OSTE33 1012 0.0037 (11/2971) 0 * Os_TE_351303 Os_TE_351299 Chr4 8316282 8316283 + ORSiTERTOOT00226 792 0.0042 (2/474) 0 * * Os_TE_351297 Chr4 8316250 8316113 + ORSgTETNOOT00323 125 0.1899 (465/2449) 1 Intact Os_TE_351296 Os_TE_351296 Chr4 8316110 8316246 + ORSgTEMT00502327 143 0.1517 (453/2987) 1 Intact Os_TE_351297 Os_TE_351287 Chr4 8315046 8314507 + XIKE 594 0.1671 (464/2777) 1 Intact * Os_TE_351286 Chr4 8314411 8314410 - ORSgTEMT01400015 213 0.8519 (2289/2687) 0 * Os_TE_351285 Os_TE_351285 Chr4 8314403 8314404 + ORSgTEMT01400032 215 0.7757 (1418/1828) 0 * Os_TE_351286 Os_TE_351275 Chr4 8308725 8308724 - SC-8_LTR 4951 0.0003 (1/2982) 0 * * Os_TE_351271 Chr4 8307390 8307389 - ORSgTEMT01701676 156 0.8531 (2515/2948) 0 * Os_TE_351270 Os_TE_351270 Chr4 8307388 8307389 - STOWAWAY1_OS 149 0.8575 (2563/2989) 0 * Os_TE_351271 Os_TE_351269 Chr4 8307333 8307334 - STOWAWAY1_OS 149 0.0004 (1/2732) 0 * * Os_TE_351259 Chr4 8303799 8303798 - RIREX_LTR 8828 0.0003 (1/2993) 0 * * Os_TE_351221 Chr4 8286179 8296454 + ORSiTERTOOT00291 11421 0.1773 (531/2995) 1 Intact * Os_TE_351219 Chr4 8286141 8286142 + TRUNCATOR 2918 0.0004 (1/2492) 0 * * Os_TE_351212 Chr4 8277042 8277043 - MERMITE18B 1306 0.8279 (2449/2958) 0 * * Os_TE_351206 Chr4 8273621 8273620 - RETROSAT5_LTR 13878 0.1743 (513/2944) 0 * * Os_TE_351189 Chr4 8268955 8268956 + STOWAWAY11_OS 292 0.0018 (5/2763) 0 * * Os_TE_351172 Chr4 8262402 8262403 - STOWAWAY1_OS 149 0.0014 (1/734) 0 * * Os_TE_351169 Chr4 8261168 8261169 + SPMLIKE 10989 0.1054 (70/664) 0 * * Os_TE_351163 Chr4 8258947 8258948 + RIREX_LTR 8828 0.0003 (1/2990) 0 * * Os_TE_351158 Chr4 8251882 8251883 + RIREX_LTR 8828 0.0066 (4/607) 0 * Os_TE_351157 Os_TE_351157 Chr4 8251878 8251877 - RIREX_LTR 8828 0.0066 (4/608) 0 * Os_TE_351158 Os_TE_351152 Chr4 8250507 8251074 + GYPSY-B_LTR 7068 0.1758 (526/2992) 1 Solo_LTR * Os_TE_351151 Chr4 8250210 8250211 + SZ-28LTR 262 0.0020 (6/2942) 0 * * Os_TE_351142 Chr4 8248212 8248213 - MPING 430 0.0018 (1/545) 0 * Os_TE_351141 Os_TE_351141 Chr4 8248210 8248209 + MPING 430 0.0003 (1/2858) 0 * Os_TE_351142 Os_TE_351139 Chr4 8248124 8248125 + SEVERIN-2 1952 0.1816 (516/2842) 0 * * Os_TE_351136 Chr4 8246813 8246814 + ORSgTEMT01601488 239 0.1746 (509/2916) 0 * * Os_TE_351135 Chr4 8246644 8246537 - TREP219 104 0.1771 (525/2964) 1 Intact * Os_TE_351133 Chr4 8246213 8246018 - ORSgTEMT02000047 197 0.1795 (531/2959) 1 Intact * Os_TE_351130 Chr4 8245901 8245900 - ORSgTEMT03000007 372 0.1554 (411/2644) 0 * * Os_TE_351127 Chr4 8243424 8243425 + RIREX_LTR 8828 0.0010 (3/2978) 0 * Os_TE_351126 Os_TE_351126 Chr4 8243420 8243419 - RIREX_LTR 8828 0.0010 (3/2980) 0 * Os_TE_351127 Os_TE_351125 Chr4 8242989 8242990 + RETRO2_LTR 12874 0.0182 (54/2968) 0 * Os_TE_351124 Os_TE_351124 Chr4 8242985 8242984 - RETRO2_LTR 12874 0.0192 (57/2966) 0 * Os_TE_351125 Os_TE_351053 Chr4 8214885 8214886 - F569 228 0.0003 (1/2989) 0 * * Os_TE_351049 Chr4 8211568 8211421 - ORSgTEMT00500026 147 0.1821 (534/2933) 1 Intact * Os_TE_351041 Chr4 8210512 8210513 + GYPSY1-LTR_OS 8900 0.8215 (2343/2852) 0 * * Os_TE_351037 Chr4 8210350 8210107 - ORSgTEMT00900965 216 0.1785 (531/2975) 1 Intact Os_TE_351034 Os_TE_351034 Chr4 8210102 8210349 + ORSgTEMT00901202 248 0.1829 (538/2942) 1 Intact Os_TE_351037 Os_TE_351032 Chr4 8209605 8209606 + MPING 430 0.0003 (1/2950) 0 * Os_TE_351031 Os_TE_351031 Chr4 8209603 8209602 - MPING 430 0.0003 (1/2899) 0 * Os_TE_351032 Os_TE_351026 Chr4 8207794 8207793 + OSTE1 801 0.8212 (2388/2908) 0 * * Os_TE_350921 Chr4 8168662 8168663 + SZ-50_LTR 11691 0.7338 (1348/1837) 0 * Os_TE_350920 Os_TE_350920 Chr4 8168658 8168657 - SZ-50_LTR 11691 0.6341 (858/1353) 0 * Os_TE_350921 Os_TE_350870 Chr4 8140279 8140280 - STOWAWAY43_OS 233 0.6513 (1001/1537) 0 * * Os_TE_350837 Chr4 8116865 8116866 - BAJIELTR 4500 0.8305 (2484/2991) 0 * Os_TE_350836 Os_TE_350836 Chr4 8116861 8116860 + BAJIELTR 4500 0.8296 (2483/2993) 0 * Os_TE_350837 Os_TE_350815 Chr4 8109749 8109750 + GYPSY1-LTR_OS 8900 0.6628 (969/1462) 0 * * Os_TE_350805 Chr4 8100754 8100753 - OSTE28 298 0.0027 (5/1858) 0 * * Os_TE_350781 Chr4 8088830 8088983 - ORSgTEMT01701182 145 0.1789 (522/2918) 1 Intact * Os_TE_350769 Chr4 8078416 8078415 + ORSgTEMT00800040 372 0.8160 (2315/2837) 0 * * Os_TE_350754 Chr4 8070590 8070591 + SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_350753 Os_TE_350753 Chr4 8070586 8070585 - SC-8_LTR 4951 0.0003 (1/2993) 0 * Os_TE_350754 Os_TE_350739 Chr4 8061489 8061490 + ORSiTERTOOT00226 792 0.0003 (1/2997) 0 * * Os_TE_350725 Chr4 8055386 8050912 + ATLANTYS-LTR_OS 13740 0.2104 (527/2505) 1 Intact * Os_TE_350716 Chr4 8049593 8049253 - ORSgTEMT01900024 348 0.1744 (512/2935) 1 Intact * Os_TE_350709 Chr4 8048760 8049207 - ORSgTEMT01800105 452 0.1730 (499/2884) 1 Intact * Os_TE_350704 Chr4 8047306 8047307 - TRUNCATOR 2918 0.2847 (837/2940) 0 * * Os_TE_350701 Chr4 8046727 8046728 + RIREX_LTR 8828 0.0014 (4/2947) 0 * Os_TE_350700 Os_TE_350700 Chr4 8046723 8046722 - RIREX_LTR 8828 0.0014 (4/2957) 0 * Os_TE_350701 Os_TE_350686 Chr4 8031322 8025336 - ORSiTERT00100062 5674 0.7774 (426/548) 1 Intact Os_TE_350681 Os_TE_350681 Chr4 8025336 8031305 + OSTONOR1_LTR 6440 0.7802 (433/555) 1 Intact Os_TE_350686 Os_TE_350678 Chr4 8022568 8024064 + SZ-37_LTR 12001 0.5152 (544/1056) 1 Solo_LTR * Os_TE_350677 Chr4 8021965 8021966 - RIRE3_LTR 12054 0.0009 (1/1070) 0 * * Os_TE_350673 Chr4 8016965 8016964 + STOWAWAY21_OS 243 0.5009 (534/1066) 0 * * Os_TE_350660 Chr4 8013230 8013231 - MERMITE18D 1491 0.4858 (512/1054) 0 * * Os_TE_350647 Chr4 8007928 8007929 - RETRO1_LTR 8314 0.0512 (54/1055) 0 * * Os_TE_350634 Chr4 8003952 8005342 - SZ-29LTR 1393 0.4158 (1054/2535) 0.79 Intact * Os_TE_350618 Chr4 7987366 7987367 + JOUZHENA 607 0.0040 (5/1260) 0 * Os_TE_350617 Os_TE_350617 Chr4 7987359 7987358 - JOUZHENA 607 0.0047 (5/1073) 0 * Os_TE_350618 Os_TE_350609 Chr4 7974923 7974924 + RETROSAT2LTR 12796 0.0102 (11/1077) 0 * * Os_TE_350543 Chr4 7910197 7910196 + OSTE21 1271 0.0134 (13/968) 0 * * Os_TE_350424 Chr4 7822311 7822312 + SZ-62LTR 3649 0.0012 (3/2504) 0 * * Os_TE_350205 Chr4 7689079 7689080 - ORSgTERT00201216 11284 0.0004 (1/2448) 0 * * Os_TE_350091 Chr4 7621784 7621783 - SZ-67LTR 1540 0.0062 (6/971) 0 * * Os_TE_350086 Chr4 7618796 7607132 - ORSgTETN00200001 10994 0.4144 (443/1069) 1 Intact * Os_TE_350085 Chr4 7618782 7618781 - SZ-50_LTR 11691 0.0009 (1/1108) 0 * * Os_TE_350081 Chr4 7607133 7618796 + SPMLIKE 10989 0.4183 (448/1071) 1 Intact * Os_TE_350079 Chr4 7606771 7606770 - COPIA2-LTR_OS 6433 0.0009 (1/1081) 0 * * Os_TE_350078 Chr4 7606473 7595073 + ENSPM4_OS 11610 0.4175 (448/1073) 1 Intact Os_TE_350075 Os_TE_350075 Chr4 7595072 7606473 - ENSPM4_OS 11610 0.4177 (449/1075) 1 Intact Os_TE_350078 Os_TE_350074 Chr4 7594288 7594287 + Cassandra_OS-LTR 764 0.0047 (5/1053) 0 * * Os_TE_350055 Chr4 7584994 7584758 - ORSgTETNOOT00361 249 0.7824 (1061/1356) 1 Intact * Os_TE_350052 Chr4 7584570 7584571 + MPING 430 0.0009 (1/1060) 0 * Os_TE_350051 Os_TE_350051 Chr4 7584568 7584567 - MPING 430 0.0009 (1/1059) 0 * Os_TE_350052 Os_TE_350044 Chr4 7583973 7583974 - TRUNCATOR2_LTR 2904 0.0056 (6/1064) 0 * Os_TE_350043 Os_TE_350043 Chr4 7583969 7583968 + TRUNCATOR2_LTR 2904 0.0047 (5/1063) 0 * Os_TE_350044 Os_TE_350006 Chr4 7568462 7568461 - STOWAWAY9_OS 235 0.0011 (1/926) 0 * * Os_TE_349992 Chr4 7558717 7558718 + COPIA2-LTR_OS 6433 0.1444 (431/2984) 0 * Os_TE_349991 Os_TE_349991 Chr4 7558713 7558712 - COPIA2-LTR_OS 6433 0.1437 (428/2979) 0 * Os_TE_349992 Os_TE_349972 Chr4 7554069 7554070 - RIRE2_LTR 11306 0.2963 (864/2916) 0 * Os_TE_349971 Os_TE_349971 Chr4 7554065 7554064 - ORSgTERT00201216 11284 0.3012 (880/2922) 0 * Os_TE_349972 Os_TE_349943 Chr4 7545377 7545376 - TRUNCATOR 2918 0.2845 (848/2981) 0 * Os_TE_349942 Os_TE_349942 Chr4 7545376 7545377 + TRUNCATOR 2918 0.2914 (873/2996) 0 * Os_TE_349943 Os_TE_349882 Chr4 7528959 7528960 + RIRE3_LTR 12054 0.0241 (72/2993) 0 * Os_TE_349881 Os_TE_349881 Chr4 7528955 7528954 - RIRE3_LTR 12054 0.0247 (74/2991) 0 * Os_TE_349882 Os_TE_349878 Chr4 7523573 7528192 - ORSgTETN00200001 10994 0.1723 (515/2989) 1 Intact * Os_TE_349850 Chr4 7508666 7508667 + SC-8_LTR 4951 0.0003 (1/2980) 0 * Os_TE_349849 Os_TE_349849 Chr4 7508662 7508661 - SC-8_LTR 4951 0.0003 (1/2980) 0 * Os_TE_349850 Os_TE_349846 Chr4 7504201 7504200 + OLO24 345 0.0004 (1/2557) 0 * * Os_TE_349845 Chr4 7503985 7503984 - RIRE3_LTR 12054 0.0004 (1/2781) 0 * * Os_TE_349844 Chr4 7503879 7503462 + ORSgTEMT00300069 394 0.1811 (500/2761) 1 Intact * Os_TE_349818 Chr4 7497745 7497746 + ORSiTERTOOT00034 791 0.0003 (1/2914) 0 * * Os_TE_349793 Chr4 7488348 7488349 + ORSiCMCM00100019 2717 0.6611 (1968/2977) 0 * * Os_TE_349785 Chr4 7484809 7487874 - RETROSAT3_LTR 11537 0.1734 (516/2976) 1 Solo_LTR * Os_TE_349777 Chr4 7483210 7483211 + TRUNCATOR 2918 0.0094 (28/2986) 0 * * Os_TE_349768 Chr4 7480154 7480155 + COPI2_LTR 4733 0.0003 (1/2974) 0 * Os_TE_349767 Os_TE_349767 Chr4 7480150 7480149 - COPI2_LTR 4733 0.0003 (1/2975) 0 * Os_TE_349768 Os_TE_349766 Chr4 7479207 7479206 + ORSgTEMT01601591 242 0.1489 (443/2976) 0 * Os_TE_349765 Os_TE_349765 Chr4 7479199 7479200 + ORSgTEMT01601591 242 0.1477 (439/2972) 0 * Os_TE_349766 Os_TE_349728 Chr4 7466959 7466960 - SZ-9LTR 965 0.3499 (1037/2964) 0 * Os_TE_349727 Os_TE_349727 Chr4 7466955 7466954 + SZ-9LTR 965 0.3407 (1007/2956) 0 * Os_TE_349728 Os_TE_349721 Chr4 7466026 7466025 + ORSgTEMT01701104 154 0.0020 (6/2993) 0 * Os_TE_349720 Os_TE_349720 Chr4 7466023 7466024 - ORSgTEMT01701104 154 0.0020 (6/2988) 0 * Os_TE_349721 Os_TE_349706 Chr4 7434785 7465283 + CACTA-B 1103 0.1661 (495/2981) 1 Intact * Os_TE_349694 Chr4 7428687 7428688 + SPMLIKE 10989 0.0040 (12/2984) 0 * Os_TE_349693 Os_TE_349693 Chr4 7428685 7428684 - ORSgTETN00200001 10994 0.0044 (13/2985) 0 * Os_TE_349694 Os_TE_349692 Chr4 7428289 7428288 - STOWAWAY51_OS 246 0.0003 (1/2994) 0 * Os_TE_349691 Os_TE_349691 Chr4 7428286 7428287 - STOWAWAY51_OS 246 0.0003 (1/2999) 0 * Os_TE_349692 Os_TE_349690 Chr4 7427742 7427741 + NDNA1TNA_OS 334 0.0251 (75/2994) 0 * * Os_TE_349658 Chr4 7393762 7393763 + RIRE2_LTR 11306 0.0185 (55/2980) 0 * Os_TE_349657 Os_TE_349657 Chr4 7393758 7393757 - RIRE2_LTR 11306 0.0184 (55/2983) 0 * Os_TE_349658 Os_TE_349653 Chr4 7392104 7392105 - COPIA2-LTR_OS 6433 0.0107 (32/2991) 0 * Os_TE_349652 Os_TE_349652 Chr4 7392100 7392099 + COPIA2-LTR_OS 6433 0.0100 (30/2988) 0 * Os_TE_349653 Os_TE_349651 Chr4 7392064 7392065 - COPI2_LTR 4733 0.0007 (2/2990) 0 * Os_TE_349650 Os_TE_349650 Chr4 7392060 7392059 + COPI2_LTR 4733 0.0007 (2/2993) 0 * Os_TE_349651 Os_TE_349649 Chr4 7391736 7391737 + AMYLTP 383 0.0023 (7/2989) 0 * Os_TE_349648 Os_TE_349648 Chr4 7391728 7391727 - AMYLTP 383 0.0027 (8/2992) 0 * Os_TE_349649 Os_TE_349616 Chr4 7382997 7382996 - HARB-1_OS 5166 0.0003 (1/2991) 0 * * Os_TE_349602 Chr4 7380476 7380475 - SC-4_LTR 5218 0.0003 (1/2993) 0 * * Os_TE_349596 Chr4 7379392 7379393 + MERMITE18B 1306 0.0019 (5/2590) 0 * * Os_TE_349574 Chr4 7372439 7372440 - RIRE3A_LTR 10580 0.0013 (4/2991) 0 * * Os_TE_349572 Chr4 7372265 7372266 + ORSiTERTOOT00226 792 0.0003 (1/2974) 0 * * Os_TE_349557 Chr4 7367130 7367131 - TRUNCATOR 2918 0.4656 (899/1931) 0 * * Os_TE_349555 Chr4 7366916 7366915 - ORSiTERTOOT00138 2740 0.0010 (2/1994) 0 * * Os_TE_349553 Chr4 7366908 7366907 - ORSiTERTOOT00074 4935 0.0004 (1/2546) 0 * * Os_TE_349531 Chr4 7361243 7361242 - TRUNCATOR 2918 0.0041 (12/2948) 0 * * Os_TE_349529 Chr4 7360331 7360332 + ORSiCMCM00100019 2717 0.0044 (12/2702) 0 * Os_TE_349528 Os_TE_349528 Chr4 7360327 7360326 - TRUNCATOR2_LTR 2904 0.0094 (26/2772) 0 * Os_TE_349529 Os_TE_349497 Chr4 7353475 7353474 + ORSiTERTOOT00296 5553 0.0003 (1/2948) 0 * * Os_TE_349456 Chr4 7340378 7340379 - ORSgTEMT00900563 246 0.0017 (5/2978) 0 * Os_TE_349455 Os_TE_349455 Chr4 7340374 7340373 + ORSgTEMT00900105 238 0.0017 (5/2983) 0 * Os_TE_349456 Os_TE_349447 Chr4 7338971 7338970 - ORSgTEMT00100758 259 0.0017 (5/2972) 0 * * Os_TE_349396 Chr4 7320823 7320824 + OSR3_LTR 5201 0.0003 (1/2990) 0 * * Os_TE_349395 Chr4 7318414 7318415 - SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_349394 Os_TE_349394 Chr4 7318410 7318409 + SC-8_LTR 4951 0.0003 (1/2990) 0 * Os_TE_349395 Os_TE_349392 Chr4 7316629 7316628 - ORSgTEMT02000040 196 0.8047 (2039/2534) 0 * * Os_TE_349371 Chr4 7313925 7313926 - OSTE33 1012 0.4545 (968/2130) 0 * Os_TE_349370 Os_TE_349370 Chr4 7313916 7313915 - OSTE33 1012 0.4664 (1012/2170) 0 * Os_TE_349371 Os_TE_349355 Chr4 7307265 7307266 - SC-3_LTR 5748 0.0445 (133/2992) 0 * Os_TE_349354 Os_TE_349354 Chr4 7307261 7307260 + ORSiTERTOOT00296 5553 0.0444 (133/2996) 0 * Os_TE_349355 Os_TE_349344 Chr4 7302635 7302636 - SC-3_LTR 5748 0.0003 (1/2969) 0 * Os_TE_349343 Os_TE_349343 Chr4 7302631 7302630 + ORSiTERTOOT00296 5553 0.0003 (1/2970) 0 * Os_TE_349344 Os_TE_349342 Chr4 7301694 7301695 + CASTAWAY-3 314 0.0020 (6/2993) 0 * * Os_TE_349318 Chr4 7292625 7292624 + CACTA-B 1103 0.1435 (427/2975) 0 * Os_TE_349317 Os_TE_349317 Chr4 7292624 7292625 - ORSgTETN00200001 10994 0.1328 (391/2945) 0 * Os_TE_349318 Os_TE_349315 Chr4 7291216 7291217 - OSLINE1-4 4779 0.0024 (7/2933) 0 * * Os_TE_349295 Chr4 7287586 7287585 - ORSgTEMT01701253 161 0.0021 (6/2840) 0 * Os_TE_349294 Os_TE_349294 Chr4 7287583 7287584 + ORSgTEMT01701491 162 0.0014 (4/2840) 0 * Os_TE_349295 Os_TE_349285 Chr4 7283823 7283822 - TRUNCATOR 2918 0.0017 (5/2994) 0 * Os_TE_349284 Os_TE_349284 Chr4 7283822 7283823 + TRUNCATOR 2918 0.0020 (6/2941) 0 * Os_TE_349285 Os_TE_349278 Chr4 7280297 7280296 - TRUNCATOR 2918 0.0241 (72/2992) 0 * Os_TE_349277 Os_TE_349277 Chr4 7280296 7280297 + TRUNCATOR 2918 0.0247 (74/2992) 0 * Os_TE_349278 Os_TE_349249 Chr4 7270406 7270407 + SPMLIKE 10989 0.0040 (12/2975) 0 * * Os_TE_349231 Chr4 7264829 7264828 + ORSgTEMT03000039 377 0.0010 (3/2990) 0 * * Os_TE_349209 Chr4 7260453 7260454 - ORSiTETNOOT00147 3619 0.0053 (16/2993) 0 * Os_TE_349208 Os_TE_349208 Chr4 7260446 7260445 + ORSiTETNOOT00147 3619 0.0057 (17/2995) 0 * Os_TE_349209 Os_TE_349207 Chr4 7259204 7259205 + COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_349206 Os_TE_349206 Chr4 7259200 7259199 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_349207 Os_TE_349203 Chr4 7257614 7256952 + TWIFB1 3737 0.0792 (235/2968) 1 Intact * Os_TE_349200 Chr4 7256301 7256300 - COPI2_LTR 4733 0.0003 (1/2974) 0 * * Os_TE_349199 Chr4 7255661 7255662 + COPI2_LTR 4733 0.2795 (834/2984) 0 * Os_TE_349198 Os_TE_349198 Chr4 7255657 7255656 - COPI2_LTR 4733 0.2872 (860/2994) 0 * Os_TE_349199 Os_TE_349180 Chr4 7247417 7247418 - ORSiTERTOOT00291 11421 0.0017 (5/2986) 0 * Os_TE_349179 Os_TE_349179 Chr4 7247413 7247412 + ORSiTERTOOT00291 11421 0.0007 (2/2981) 0 * Os_TE_349180 Os_TE_349178 Chr4 7246717 7246718 - COPI2_LTR 4733 0.0013 (4/2974) 0 * Os_TE_349177 Os_TE_349177 Chr4 7246713 7246712 + COPI2_LTR 4733 0.0013 (4/2970) 0 * Os_TE_349178 Os_TE_349163 Chr4 7245491 7245247 - STOWAWAY51_OS 246 0.1526 (450/2948) 1 Intact * Os_TE_349161 Chr4 7244906 7244907 - NDNA1TNA_OS 334 0.0255 (76/2983) 0 * Os_TE_349160 Os_TE_349160 Chr4 7244904 7244903 + NDNA1TNA_OS 334 0.0244 (73/2986) 0 * Os_TE_349161 Os_TE_349155 Chr4 7243685 7243686 + ORSgTEMT01601591 242 0.0003 (1/2910) 0 * * Os_TE_349153 Chr4 7243536 7243535 - ORSgTEMT00100582 334 0.4463 (706/1582) 0 * * Os_TE_349118 Chr4 7225920 7225919 + TRUNCATOR 2918 0.0003 (1/2952) 0 * * Os_TE_349100 Chr4 7217613 7217614 - ORSgTERT00200486 3946 0.0053 (11/2092) 0 * * Os_TE_349081 Chr4 7210758 7210757 + TRUNCATOR 2918 0.5693 (1647/2893) 0 * Os_TE_349080 Os_TE_349080 Chr4 7210757 7210758 - TRUNCATOR 2918 0.5534 (1618/2924) 0 * Os_TE_349081 Os_TE_349043 Chr4 7195890 7195891 + ORSiCMCM00100019 2717 0.0667 (200/2999) 0 * Os_TE_349042 Os_TE_349042 Chr4 7195887 7195886 - TRUNCATOR2_LTR 2904 0.0700 (210/2998) 0 * Os_TE_349043 Os_TE_349037 Chr4 7192348 7192349 - AMYLTP 383 0.2851 (843/2957) 0 * Os_TE_349036 Os_TE_349036 Chr4 7192340 7192339 + AMYLTP 383 0.2790 (824/2953) 0 * Os_TE_349037 Os_TE_349033 Chr4 7190156 7178819 - ORSgTERT00201216 11284 0.2491 (476/1911) 1 Intact Os_TE_349022 Os_TE_349022 Chr4 7178819 7190156 - RIRE2_LTR 11306 0.1557 (466/2992) 1 Intact Os_TE_349033 Os_TE_349013 Chr4 7170916 7170917 + ORSgTEMT01601488 239 0.0017 (4/2287) 0 * * Os_TE_349008 Chr4 7170021 7170020 + COPI2_LTR 4733 0.0003 (1/2990) 0 * * Os_TE_349001 Chr4 7169125 7169126 + RIRE2_LTR 11306 0.0011 (2/1892) 0 * Os_TE_349000 Os_TE_349000 Chr4 7169121 7169120 - RIRE2_LTR 11306 0.0011 (2/1899) 0 * Os_TE_349001 Os_TE_348999 Chr4 7168980 7168621 - BUHUI 375 0.6728 (1875/2787) 1 Intact Os_TE_348997 Os_TE_348997 Chr4 7168621 7168978 + BUHUI 375 0.6257 (1857/2968) 1 Intact Os_TE_348999 Os_TE_348996 Chr4 7167643 7167642 + STOWAWAY21_OS 243 0.0240 (72/2995) 0 * Os_TE_348995 Os_TE_348995 Chr4 7167642 7167643 + ORSgTEMT01601122 212 0.0241 (72/2986) 0 * Os_TE_348996 Os_TE_348970 Chr4 7159063 7159062 - NDNA1TNA_OS 334 0.0223 (64/2875) 0 * * Os_TE_348890 Chr4 7109233 7109234 - SEVERIN-2 1952 0.0242 (30/1241) 0 * * Os_TE_348882 Chr4 7106543 7106542 + ORSgTETN00200005 1121 0.0238 (30/1259) 0 * Os_TE_348881 Os_TE_348881 Chr4 7106542 7106543 + CACTA-H 1152 0.0215 (27/1258) 0 * Os_TE_348882 Os_TE_348876 Chr4 7105126 7105127 + ORSgTETNOOT01930 140 0.0008 (1/1245) 0 * * Os_TE_348861 Chr4 7092854 7092853 - TRUNCATOR 2918 0.5700 (672/1179) 0 * Os_TE_348860 Os_TE_348860 Chr4 7092849 7092850 + TRUNCATOR 2918 0.5952 (738/1240) 0 * Os_TE_348861 Os_TE_348859 Chr4 7092212 7092213 - TRUNCATOR2_LTR 2904 0.0008 (1/1254) 0 * * Os_TE_348844 Chr4 7083450 7083449 - RETRO1_LTR 8314 0.0008 (1/1202) 0 * * Os_TE_348834 Chr4 7078571 7078570 + ORSiTERTOOT00028 8600 0.5751 (674/1172) 0 * * Os_TE_348784 Chr4 7036190 7036191 + TRUNCATOR 2918 0.0260 (31/1194) 0 * Os_TE_348783 Os_TE_348783 Chr4 7036184 7036183 - ORSiTERT00200154 9386 0.0175 (21/1203) 0 * Os_TE_348784 Os_TE_348775 Chr4 7029750 7029749 + TRUNCATOR 2918 0.0057 (3/523) 0 * * Os_TE_348743 Chr4 7007827 7007826 + ORSgTEMT00501356 145 0.0010 (3/2987) 0 * * Os_TE_348742 Chr4 7007610 7007611 - NDNA1TNA_OS 334 0.0910 (267/2934) 0 * * Os_TE_348738 Chr4 7004983 7004771 + ORSgTEMT01601122 212 0.8990 (2670/2970) 1 Intact * Os_TE_348733 Chr4 7001911 7001453 + JINHUA 479 0.4573 (1338/2926) 1 Intact * Os_TE_348732 Chr4 7000878 7000643 + ORSgTEMT01602580 283 0.4527 (1325/2927) 1 Intact * Os_TE_348727 Chr4 6996748 6996749 + ORSgTEMT01601591 242 0.0003 (1/2938) 0 * * Os_TE_348726 Chr4 6995742 6995741 - MERMITED 1572 0.0021 (5/2390) 0 * * Os_TE_348709 Chr4 6989301 6989302 + RIREX_LTR 8828 0.3423 (801/2340) 0 * Os_TE_348708 Os_TE_348708 Chr4 6989297 6989296 - RIREX_LTR 8828 0.3288 (753/2290) 0 * Os_TE_348709 Os_TE_348692 Chr4 6980420 6980419 - MUDRN3_OS 903 0.1307 (356/2724) 0 * * Os_TE_348691 Chr4 6979261 6979262 - SC-8_LTR 4951 0.0017 (4/2407) 0 * * Os_TE_348685 Chr4 6975003 6975002 + ORSiTERTOOT00097 759 0.3829 (780/2037) 0 * * Os_TE_348674 Chr4 6965519 6962712 + TRUNCATOR 2918 0.1135 (339/2986) 1 Intact * Os_TE_348661 Chr4 6961224 6961223 + ORSgTEMT01602181 239 0.1246 (254/2038) 0 * * Os_TE_348646 Chr4 6948733 6948732 - F569 228 0.0370 (107/2893) 0 * * Os_TE_348621 Chr4 6943962 6943963 - ORSgTETN00200001 10994 0.0087 (26/2990) 0 * * Os_TE_348620 Chr4 6941945 6941946 - SC-3_LTR 5748 0.0013 (4/2975) 0 * Os_TE_348619 Os_TE_348619 Chr4 6941941 6941940 + ORSiTERTOOT00296 5553 0.0013 (4/2974) 0 * Os_TE_348620 Os_TE_348618 Chr4 6941572 6941573 + SC-8_LTR 4951 0.2577 (766/2973) 0 * Os_TE_348617 Os_TE_348617 Chr4 6941568 6941567 - SC-8_LTR 4951 0.2583 (768/2973) 0 * Os_TE_348618 Os_TE_348607 Chr4 6937953 6937954 + ORSiTERTOOT00226 792 0.0007 (2/2931) 0 * Os_TE_348606 Os_TE_348606 Chr4 6937949 6937948 - SZ-22_LTR 4403 0.0007 (2/2919) 0 * Os_TE_348607 Os_TE_348602 Chr4 6935247 6935246 + TRUNCATOR 2918 0.0003 (1/2982) 0 * * Os_TE_348580 Chr4 6927774 6927531 + STOWAWAY51_OS 246 0.7983 (1793/2246) 1 Intact * Os_TE_348569 Chr4 6927156 6927155 + RIREX_LTR 8828 0.0101 (29/2884) 0 * * Os_TE_348543 Chr4 6907537 6907538 + ORSiTERTOOT00296 5553 0.0007 (2/2977) 0 * Os_TE_348542 Os_TE_348542 Chr4 6907533 6907532 - SC-3_LTR 5748 0.0007 (2/2978) 0 * Os_TE_348543 Os_TE_348539 Chr4 6905694 6905695 + SC-8_LTR 4951 0.0007 (2/2977) 0 * Os_TE_348538 Os_TE_348538 Chr4 6905690 6905689 - SC-8_LTR 4951 0.0007 (2/2979) 0 * Os_TE_348539 Os_TE_348477 Chr4 6859234 6859233 - RIRE3A_LTR 10580 0.0012 (3/2599) 0 * * Os_TE_348458 Chr4 6837657 6837658 + RIREX_LTR 8828 0.0110 (29/2637) 0 * Os_TE_348457 Os_TE_348457 Chr4 6837653 6837652 - RIREX_LTR 8828 0.0110 (28/2550) 0 * Os_TE_348458 Os_TE_348455 Chr4 6836744 6836745 + COPIA2-LTR_OS 6433 0.0004 (1/2594) 0 * Os_TE_348454 Os_TE_348454 Chr4 6836740 6836739 - COPIA2-LTR_OS 6433 0.0004 (1/2595) 0 * Os_TE_348455 Os_TE_348451 Chr4 6833988 6833989 - COPIA2-LTR_OS 6433 0.4087 (853/2087) 0 * * Os_TE_348235 Chr4 6742581 6742580 + UNIQUE 158 0.0011 (1/932) 0 * * Os_TE_348184 Chr4 6721325 6721326 + COPIA2-LTR_OS 6433 0.3261 (449/1377) 0 * Os_TE_348183 Os_TE_348183 Chr4 6721321 6721320 - COPIA2-LTR_OS 6433 0.4955 (878/1772) 0 * Os_TE_348184 Os_TE_348174 Chr4 6718981 6718982 + HARB-1_OS 5166 0.0005 (1/2175) 0 * Os_TE_348173 Os_TE_348173 Chr4 6718979 6718978 - HARB-1_OS 5166 0.0005 (1/2178) 0 * Os_TE_348174 Os_TE_348150 Chr4 6704332 6704333 + RETROSAT4_LTR 13504 0.0009 (2/2206) 0 * * Os_TE_348148 Chr4 6704291 6704290 + COPIA2-LTR_OS 6433 0.0005 (1/2213) 0 * * Os_TE_348147 Chr4 6703953 6703954 + SPMLIKE 10989 0.0011 (3/2622) 0 * * Os_TE_348145 Chr4 6703717 6703716 - RPO_OS 1983 0.0262 (68/2599) 0 * Os_TE_348144 Os_TE_348144 Chr4 6703716 6703717 + RPO_OS 1983 0.0247 (64/2594) 0 * Os_TE_348145 Os_TE_348131 Chr4 6695285 6695286 - ORSiTETNOOT00134 607 0.0004 (1/2507) 0 * * Os_TE_348123 Chr4 6690255 6690256 + SZ-5LTR 1223 0.0251 (66/2629) 0 * * Os_TE_348122 Chr4 6689929 6689930 - RETROSAT2LTR 12796 0.0255 (67/2624) 0 * Os_TE_348121 Os_TE_348121 Chr4 6689927 6689926 + RETROSAT2LTR 12796 0.0240 (63/2622) 0 * Os_TE_348122 Os_TE_348120 Chr4 6689186 6689187 + COPIA2-LTR_OS 6433 0.0015 (4/2588) 0 * Os_TE_348119 Os_TE_348119 Chr4 6689182 6689181 - COPIA2-LTR_OS 6433 0.0015 (4/2622) 0 * Os_TE_348120 Os_TE_348111 Chr4 6686783 6686782 + AMYLTP 383 0.0172 (45/2622) 0 * * Os_TE_348103 Chr4 6683507 6683508 - RIRE2_LTR 11306 0.0081 (21/2579) 0 * Os_TE_348102 Os_TE_348102 Chr4 6683503 6683502 - ORSgTERT00201216 11284 0.0091 (24/2625) 0 * Os_TE_348103 Os_TE_348101 Chr4 6683343 6683342 - ORSgTEMT01601432 239 0.0183 (48/2618) 0 * Os_TE_348100 Os_TE_348100 Chr4 6683340 6683341 + ORSgTEMT01602181 239 0.0172 (45/2610) 0 * Os_TE_348101 Os_TE_348098 Chr4 6683116 6683117 - ORSgTETN00200001 10994 0.0150 (39/2594) 0 * * Os_TE_348083 Chr4 6677224 6677225 + SPMLIKE 10989 0.0221 (57/2578) 0 * Os_TE_348082 Os_TE_348082 Chr4 6677222 6677221 - ORSgTETN00200001 10994 0.0228 (59/2586) 0 * Os_TE_348083 Os_TE_348081 Chr4 6677051 6667660 - SZ-35LTR 3853 0.3380 (878/2598) 1 Intact Os_TE_348077 Os_TE_348077 Chr4 6667660 6677051 + RETROSAT4_LTR 13504 0.2925 (718/2455) 1 Intact Os_TE_348081 Os_TE_348075 Chr4 6666443 6666442 + RIRE3_LTR 12054 0.0088 (23/2607) 0 * * Os_TE_348072 Chr4 6664375 6664376 + ORSiTERT00200145 12238 0.0161 (42/2602) 0 * Os_TE_348071 Os_TE_348071 Chr4 6664371 6664370 - SZ-67LTR 1540 0.0174 (45/2589) 0 * Os_TE_348072 Os_TE_348070 Chr4 6664304 6664305 + ENSPM4_OS 11610 0.0111 (29/2603) 0 * * Os_TE_348058 Chr4 6661071 6661072 - RIREX_LTR 8828 0.0095 (25/2629) 0 * Os_TE_348057 Os_TE_348057 Chr4 6661067 6661066 + RIREX_LTR 8828 0.0091 (24/2628) 0 * Os_TE_348058 Os_TE_348046 Chr4 6654940 6654941 + COPI2_LTR 4733 0.2575 (666/2586) 0 * * Os_TE_348041 Chr4 6653088 6654221 - ORSgTETN00200001 10994 0.5654 (1561/2761) 1 Intact * Os_TE_348012 Chr4 6640853 6640854 + TRUNCATOR 2918 0.2354 (550/2336) 0 * * Os_TE_348007 Chr4 6634826 6634825 + TRUNCATOR 2918 0.2382 (554/2326) 0 * Os_TE_348006 Os_TE_348006 Chr4 6634825 6634826 - TRUNCATOR 2918 0.2318 (535/2308) 0 * Os_TE_348007 Os_TE_347998 Chr4 6632589 6632590 + SZ-40LTR 2465 0.1851 (403/2177) 0 * * Os_TE_347985 Chr4 6630206 6630205 - RIRE2_LTR 11306 0.0005 (1/2215) 0 * * Os_TE_347975 Chr4 6627638 6627639 - TRUNCATOR 2918 0.2261 (521/2304) 0 * * Os_TE_347974 Chr4 6627046 6624074 + TRUNCATOR 2918 0.3745 (876/2339) 1 Intact Os_TE_347966 Os_TE_347966 Chr4 6624069 6627046 - TRUNCATOR 2918 0.3646 (848/2326) 1 Intact Os_TE_347974 Os_TE_347945 Chr4 6619149 6619148 + ORSiTERTOOT00137 717 0.0009 (2/2332) 0 * * Os_TE_347936 Chr4 6618618 6618617 - SC-8_LTR 4951 0.0009 (2/2345) 0 * * Os_TE_347933 Chr4 6618297 6618296 - RIRE2_LTR 11306 0.0019 (5/2596) 0 * * Os_TE_347932 Chr4 6618063 6618064 - MuDR3_OS 8604 0.4190 (885/2112) 0 * * Os_TE_347903 Chr4 6598483 6598484 + SZ-62LTR 3649 0.0084 (23/2724) 0 * * Os_TE_347898 Chr4 6597578 6597579 + ORSiCMCM00100019 2717 0.0026 (7/2711) 0 * Os_TE_347897 Os_TE_347897 Chr4 6597574 6597573 - TRUNCATOR2_LTR 2904 0.0026 (7/2710) 0 * Os_TE_347898 Os_TE_347895 Chr4 6597386 6597385 - RIREX_LTR 8828 0.0030 (8/2688) 0 * * Os_TE_347892 Chr4 6596739 6596740 - SZ-62LTR 3649 0.1532 (408/2663) 0 * * Os_TE_347885 Chr4 6592616 6592617 - RIRE2_LTR 11306 0.0084 (25/2979) 0 * Os_TE_347884 Os_TE_347884 Chr4 6592612 6592611 - ORSgTERT00201216 11284 0.0080 (24/2985) 0 * Os_TE_347885 Os_TE_347855 Chr4 6576357 6576358 + SZ-62LTR 3649 0.3444 (1028/2985) 0 * Os_TE_347854 Os_TE_347854 Chr4 6576353 6576352 - SZ-62LTR 3649 0.3489 (1043/2989) 0 * Os_TE_347855 Os_TE_347848 Chr4 6573801 6573800 + ORSiTERTOOT00034 791 0.0003 (1/2986) 0 * * Os_TE_347838 Chr4 6570405 6570406 - ORSgTERT00201216 11284 0.0240 (72/2998) 0 * Os_TE_347837 Os_TE_347837 Chr4 6570401 6570400 - RIRE2_LTR 11306 0.0240 (72/2999) 0 * Os_TE_347838 Os_TE_347835 Chr4 6569226 6569225 - TRUNCATOR 2918 0.0141 (42/2974) 0 * * Os_TE_347833 Chr4 6568925 6568924 + STOWAWAY51_OS 246 0.0003 (1/2893) 0 * * Os_TE_347826 Chr4 6567627 6567628 - NDNA1TNA_OS 334 0.0031 (9/2865) 0 * Os_TE_347825 Os_TE_347825 Chr4 6567625 6567624 + NDNA1TNA_OS 334 0.0034 (10/2915) 0 * Os_TE_347826 Os_TE_347824 Chr4 6567458 6567459 + ORSgTEMT00600272 361 0.0013 (4/2966) 0 * * Os_TE_347791 Chr4 6561871 6561872 - SZ-40LTR 2465 0.1460 (387/2651) 0.12 * * Os_TE_347778 Chr4 6557190 6546663 - ENSPM4_OS 11610 0.2935 (868/2957) 1 Intact Os_TE_347775 Os_TE_347775 Chr4 6546663 6557190 + ENSPM4_OS 11610 0.2860 (846/2958) 1 Intact Os_TE_347778 Os_TE_347661 Chr4 6506822 6506823 + ORSiTERTOOT00226 792 0.0007 (2/2972) 0 * Os_TE_347660 Os_TE_347660 Chr4 6506818 6506817 - SZ-22_LTR 4403 0.0007 (2/2975) 0 * Os_TE_347661 Os_TE_347657 Chr4 6506639 6506640 + MUDRN5_OS 374 0.0010 (3/2983) 0 * * Os_TE_347626 Chr4 6490951 6490950 + ORSiTERTOOT00296 5553 0.0003 (1/2972) 0 * * Os_TE_347609 Chr4 6488234 6488235 - HARB-1_OS 5166 0.0007 (2/2850) 0 * Os_TE_347608 Os_TE_347608 Chr4 6488232 6488231 + HARB-1_OS 5166 0.0007 (2/2837) 0 * Os_TE_347609 Os_TE_347594 Chr4 6485254 6485255 + COWARD-3 221 0.0047 (14/2965) 0 * * Os_TE_347593 Chr4 6485067 6485068 - COPI2_LTR 4733 0.1080 (318/2945) 0 * Os_TE_347592 Os_TE_347592 Chr4 6485063 6485062 + COPI2_LTR 4733 0.1121 (332/2961) 0 * Os_TE_347593 Os_TE_347568 Chr4 6472304 6472303 - COPI2_LTR 4733 0.0010 (3/2983) 0 * * Os_TE_347566 Chr4 6471800 6471799 - TRUNCATOR 2918 0.0037 (11/2968) 0 * Os_TE_347565 Os_TE_347565 Chr4 6471799 6471800 + TRUNCATOR 2918 0.0035 (10/2890) 0 * Os_TE_347566 Os_TE_347562 Chr4 6470843 6467737 - TRUNCATOR2_LTR 2904 0.2997 (862/2876) 1 Intact * Os_TE_347547 Chr4 6457918 6457917 + OSTONOR1_LTR 6440 0.0081 (24/2953) 0 * * Os_TE_347543 Chr4 6455515 6455516 - STOWAWAY1_OS 149 0.0099 (29/2937) 0 * * Os_TE_347542 Chr4 6455368 6455369 + SZ-55_LTR 10318 0.0244 (73/2996) 0 * * Os_TE_347540 Chr4 6453650 6453651 + ORSgTETNOOT01275 140 0.0242 (72/2973) 0 * Os_TE_347539 Os_TE_347539 Chr4 6453648 6453647 - ORSgTETNOOT01930 140 0.0232 (69/2968) 0 * Os_TE_347540 Os_TE_347536 Chr4 6452058 6452059 + RIREX_LTR 8828 0.0033 (10/2988) 0 * Os_TE_347535 Os_TE_347535 Chr4 6452054 6452053 - RIREX_LTR 8828 0.0037 (11/2986) 0 * Os_TE_347536 Os_TE_347531 Chr4 6448636 6442299 + COPIA2-LTR_OS 6433 0.2837 (848/2989) 1 Intact Os_TE_347530 Os_TE_347530 Chr4 6442299 6448636 - COPIA2-LTR_OS 6433 0.2886 (865/2997) 1 Intact Os_TE_347531 Os_TE_347379 Chr4 6379694 6379695 + TRUNCATOR2_LTR 2904 0.0368 (105/2851) 0 * * Os_TE_347365 Chr4 6375661 6375662 - ORSgTETN00200001 10994 0.1277 (366/2866) 0 * * Os_TE_347361 Chr4 6375334 6375333 - TRUNCATOR2_LTR 2904 0.1120 (323/2884) 0 * * Os_TE_347322 Chr4 6364772 6364773 - TRUNCATOR2_LTR 2904 0.0165 (48/2915) 0 * * Os_TE_347321 Chr4 6364713 6364714 - TRUNCATOR2_LTR 2904 0.0144 (42/2915) 0 * Os_TE_347320 Os_TE_347320 Chr4 6364709 6364708 + ORSiTERTOOT00028 8600 0.0144 (42/2916) 0 * Os_TE_347321 Os_TE_347265 Chr4 6343561 6343562 - RIREX_LTR 8828 0.0016 (4/2573) 0 * * Os_TE_347264 Chr4 6343223 6343222 - RIRE3_LTR 12054 0.0187 (48/2565) 0 * * Os_TE_347206 Chr4 6323380 6323381 - MUDRN1_OS 764 0.0182 (48/2642) 0 * Os_TE_347205 Os_TE_347205 Chr4 6323372 6323371 + MUDRN1_OS 764 0.0174 (46/2640) 0 * Os_TE_347206 Os_TE_347156 Chr4 6298242 6298241 + ORSiTERTOOT00088 856 0.0029 (7/2442) 0 * * Os_TE_347155 Chr4 6298231 6298230 - TRUNCATOR 2918 0.1074 (263/2448) 0 * * Os_TE_347149 Chr4 6295933 6295932 + AMYLTP 383 0.0012 (3/2486) 0 * * Os_TE_347148 Chr4 6295845 6295846 - RIREX_LTR 8828 0.0072 (19/2638) 0 * * Os_TE_347076 Chr4 6271046 6270854 - WANDERER 232 0.8791 (2597/2954) 1 Intact * Os_TE_347072 Chr4 6270181 6270182 + INDITTO 263 0.0082 (21/2569) 0 * Os_TE_347071 Os_TE_347071 Chr4 6270179 6270178 - INDITTO 263 0.0077 (20/2589) 0 * Os_TE_347072 Os_TE_347064 Chr4 6269348 6269349 + OSTE33 1012 0.0916 (271/2958) 0 * * Os_TE_347036 Chr4 6263061 6263062 + SC-1_LTR 6888 0.0093 (28/2995) 0 * * Os_TE_347035 Chr4 6262351 6262350 - F1275 157 0.0010 (3/2985) 0 * * Os_TE_347034 Chr4 6262043 6262044 - SC-3_LTR 5748 0.0248 (74/2989) 0 * Os_TE_347033 Os_TE_347033 Chr4 6262039 6262038 + SC-3_LTR 5748 0.0248 (74/2987) 0 * Os_TE_347034 Os_TE_347030 Chr4 6260339 6260340 + BUHUI 375 0.5757 (1670/2901) 0 * Os_TE_347029 Os_TE_347029 Chr4 6260337 6260336 - BUHUI 375 0.5800 (1692/2917) 0 * Os_TE_347030 Os_TE_347019 Chr4 6258249 6258248 - DS-RICE2N 613 0.1242 (342/2754) 0 * * Os_TE_347014 Chr4 6254391 6254392 - SZ-50_LTR 11691 0.0007 (2/2892) 0 * * Os_TE_346974 Chr4 6231410 6231411 - NDNA1TNA_OS 334 0.0188 (56/2986) 0 * Os_TE_346973 Os_TE_346973 Chr4 6231408 6231407 + NDNA1TNA_OS 334 0.0177 (53/2991) 0 * Os_TE_346974 Os_TE_346970 Chr4 6229820 6229819 - ORSgTEMT01601208 238 0.0100 (29/2891) 0 * * Os_TE_346953 Chr4 6223233 6223234 - MUDRN3_OS 903 0.1910 (557/2916) 0 * Os_TE_346952 Os_TE_346952 Chr4 6223225 6223224 + MUDRN2_OS 756 0.1867 (541/2897) 0 * Os_TE_346953 Os_TE_346917 Chr4 6200810 6200809 - ORSgTERT00201216 11284 0.0173 (48/2768) 0 * * Os_TE_346914 Chr4 6197942 6197941 - RIRE3A_LTR 10580 0.0005 (1/2191) 0 * * Os_TE_346907 Chr4 6193746 6198994 - SZ-54C_LTR 5249 0.3105 (861/2773) 1 Intact * Os_TE_346762 Chr4 6134467 6134466 - RIRE3_LTR 12054 0.1845 (509/2759) 0 * * Os_TE_346760 Chr4 6134458 6134459 - TRUNCATOR 2918 0.0912 (250/2742) 0 * * Os_TE_346703 Chr4 6100582 6100583 + AMYLTP 383 0.0350 (103/2942) 0 * Os_TE_346702 Os_TE_346702 Chr4 6100574 6100573 - AMYLTP 383 0.0360 (106/2941) 0 * Os_TE_346703 Os_TE_346699 Chr4 6100070 6100071 - ORSgTETN00200001 10994 0.0167 (47/2821) -1 * * Os_TE_346692 Chr4 6095410 6095411 - ORSgTERT00201216 11284 0.0050 (15/2989) 0 * * Os_TE_346687 Chr4 6091565 6091564 + COPIA2-LTR_OS 6433 0.1497 (438/2926) 0 * * Os_TE_346681 Chr4 6089671 6083847 - SZ-36LTR 5825 0.2910 (863/2966) 1 Intact Os_TE_346679 Os_TE_346679 Chr4 6083847 6089671 + SZ-36LTR 5825 0.2768 (805/2908) 1 Intact Os_TE_346681 Os_TE_346678 Chr4 6083767 6071185 + RETRO2_LTR 12874 0.2999 (800/2668) 1 Intact Os_TE_346659 Os_TE_346659 Chr4 6071185 6083767 - RETRO2_LTR 12874 0.2891 (852/2947) 1 Intact Os_TE_346678 Os_TE_346651 Chr4 6069792 6069793 + AMYLTP 383 0.0034 (10/2959) 0 * Os_TE_346650 Os_TE_346650 Chr4 6069784 6069783 - AMYLTP 383 0.0034 (10/2981) 0 * Os_TE_346651 Os_TE_346629 Chr4 6059160 6059161 - COPIA2-LTR_OS 6433 0.0010 (3/2944) 0 * Os_TE_346628 Os_TE_346628 Chr4 6059156 6059155 + COPIA2-LTR_OS 6433 0.0007 (2/2947) 0 * Os_TE_346629 Os_TE_346627 Chr4 6058253 6058252 - TRUNCATOR 2918 0.1310 (388/2961) 0 * Os_TE_346626 Os_TE_346626 Chr4 6058252 6058253 + TRUNCATOR 2918 0.1319 (385/2918) 0 * Os_TE_346627 Os_TE_346624 Chr4 6057228 6057229 + COPIA2-LTR_OS 6433 0.0004 (1/2793) 0 * Os_TE_346623 Os_TE_346623 Chr4 6057224 6057223 - COPIA2-LTR_OS 6433 0.0003 (1/2887) 0 * Os_TE_346624 Os_TE_346612 Chr4 6047449 6047448 - RETROSAT4_LTR 13504 0.0040 (12/2963) 0 * * Os_TE_346610 Chr4 6046721 6046722 + COPI2_LTR 4733 0.0007 (2/2979) 0 * Os_TE_346609 Os_TE_346609 Chr4 6046717 6046716 - COPI2_LTR 4733 0.0007 (2/2978) 0 * Os_TE_346610 Os_TE_346602 Chr4 6045456 6045457 - ORSgTETN00200001 10994 0.0247 (73/2960) 0 * * Os_TE_346594 Chr4 6043609 6043610 - MERMITE18C 1473 0.0087 (26/2974) 0 * * Os_TE_346577 Chr4 6039578 6039577 + TRUNCATOR 2918 0.0027 (8/2994) 0 * Os_TE_346576 Os_TE_346576 Chr4 6039577 6039578 - TRUNCATOR 2918 0.0023 (7/2995) 0 * Os_TE_346577 Os_TE_346535 Chr4 6013419 6020848 + RIREX_LTR 8828 0.1879 (534/2842) 1 Intact * Os_TE_346530 Chr4 6010431 6010432 + RETROSAT4_LTR 13504 0.0168 (50/2973) 0 * * Os_TE_346526 Chr4 6009384 6009385 + ORSiCMCM00100019 2717 0.0050 (15/2977) 0 * Os_TE_346525 Os_TE_346525 Chr4 6009380 6009379 - TRUNCATOR2_LTR 2904 0.0051 (15/2947) 0 * Os_TE_346526 Os_TE_346520 Chr4 6007126 6007127 + RETROSAT4_LTR 13504 0.0015 (4/2651) 0 * Os_TE_346519 Os_TE_346519 Chr4 6007122 6007121 - SZ-35LTR 3853 0.0078 (18/2299) 0 * Os_TE_346520 Os_TE_346513 Chr4 6003543 6003542 + MUDRN3_OS 903 0.5261 (1553/2952) 0 * * Os_TE_346484 Chr4 5991821 5991820 + ORSiTERTOOT00226 792 0.0040 (6/1504) 0 * * Os_TE_346479 Chr4 5990830 5991197 - TYPEU1 380 0.4913 (1470/2992) 1 Intact * Os_TE_346477 Chr4 5990673 5990672 - ORSgTEMT00901723 248 0.5182 (1524/2941) 0 * * Os_TE_346476 Chr4 5988129 5987782 + ORSgTEMT00100011 343 0.5054 (1501/2970) 1 Intact Os_TE_346472 Os_TE_346472 Chr4 5987780 5988127 + ORSgTEMT00100291 345 0.5049 (1500/2971) 1 Intact Os_TE_346476 Os_TE_346466 Chr4 5982060 5984589 + TRUNCATOR 2918 0.1930 (555/2876) 0.88 Intact * Os_TE_346444 Chr4 5973487 5973488 - RIREX_LTR 8828 0.0030 (9/2970) 0 * * Os_TE_346442 Chr4 5972405 5972404 - TRUNCATOR 2918 0.0268 (80/2985) 0 * Os_TE_346441 Os_TE_346441 Chr4 5972404 5972405 + TRUNCATOR 2918 0.0284 (85/2994) 0 * Os_TE_346442 Os_TE_346438 Chr4 5971539 5970779 - MUDRN3_OS 903 0.1755 (521/2968) 1 Intact Os_TE_346437 Os_TE_346437 Chr4 5970779 5971539 - MUDRN3_OS 903 0.1778 (528/2969) 1 Intact Os_TE_346438 Os_TE_346434 Chr4 5967830 5956803 - ORSgTETN00200001 10994 0.1694 (503/2970) 1 Intact Os_TE_346425 Os_TE_346425 Chr4 5956803 5967830 + SPMLIKE 10989 0.1783 (519/2911) 1 Intact Os_TE_346434 Os_TE_346422 Chr4 5954595 5954594 - STOWAWAY51_OS 246 0.1752 (521/2974) 0 * Os_TE_346421 Os_TE_346421 Chr4 5954589 5954590 + STOWAWAY51_OS 246 0.1793 (532/2967) 0 * Os_TE_346422 Os_TE_346418 Chr4 5950921 5939249 - ORSgTETN00200001 10994 0.2084 (506/2428) 1 Intact Os_TE_346414 Os_TE_346414 Chr4 5939250 5950921 + SPMLIKE 10989 0.1741 (495/2843) 1 Intact Os_TE_346418 Os_TE_346413 Chr4 5939179 5939027 - ORSgTEMT01700507 154 0.7209 (2051/2845) 1 Intact Os_TE_346411 Os_TE_346411 Chr4 5939029 5939176 + STOWAWAY1_OS 149 0.7178 (2037/2838) 1 Intact Os_TE_346413 Os_TE_346408 Chr4 5938113 5938112 + OLO24C 356 0.2861 (849/2968) 0 * * Os_TE_346407 Chr4 5937606 5937605 + TREP215 239 0.2833 (836/2951) 0 * * Os_TE_346405 Chr4 5937450 5937582 + OSTE19 162 0.7571 (2147/2836) 1 Intact * Os_TE_346397 Chr4 5934083 5933172 + CACTA-D 1038 0.6467 (1567/2423) 1 Intact Os_TE_346394 Os_TE_346394 Chr4 5933172 5934080 - CACTA-I 1124 0.7235 (2161/2987) 1 Intact Os_TE_346397 Os_TE_346387 Chr4 5928532 5928325 - ORSgTEMT01400019 216 0.7098 (2116/2981) 1 Intact Os_TE_346384 Os_TE_346384 Chr4 5928292 5928530 + ORSgTEMT01400031 216 0.7175 (2118/2952) 1 Intact Os_TE_346387 Os_TE_346381 Chr4 5926943 5926944 + AMYLTP 383 0.0117 (33/2829) 0 * Os_TE_346380 Os_TE_346380 Chr4 5926935 5926934 - AMYLTP 383 0.0121 (34/2810) 0 * Os_TE_346381 Os_TE_346373 Chr4 5922686 5922687 - SZ-9LTR 965 0.0003 (1/2980) 0 * * Os_TE_346357 Chr4 5918156 5918155 - TRUNCATOR 2918 0.0020 (6/2975) 0 * * Os_TE_346350 Chr4 5915955 5915956 - COPI2_LTR 4733 0.1173 (343/2923) 0 * Os_TE_346349 Os_TE_346349 Chr4 5915951 5915950 + COPI2_LTR 4733 0.1069 (311/2910) 0 * Os_TE_346350 Os_TE_346348 Chr4 5915186 5915187 - COPI2_LTR 4733 0.0003 (1/2974) 0 * Os_TE_346347 Os_TE_346347 Chr4 5915182 5915181 + COPI2_LTR 4733 0.0003 (1/2929) 0 * Os_TE_346348 Os_TE_346341 Chr4 5913226 5913227 - COPI2_LTR 4733 0.0024 (7/2978) 0 * Os_TE_346340 Os_TE_346340 Chr4 5913222 5913221 + COPI2_LTR 4733 0.0027 (8/2975) 0 * Os_TE_346341 Os_TE_346339 Chr4 5912982 5912981 - ORSiTERTOOT00273 5419 0.4577 (1365/2982) 0 * * Os_TE_346337 Chr4 5912631 5912630 - RIRE2_LTR 11306 0.0010 (3/2965) 0 * * Os_TE_346335 Chr4 5912529 5912530 - ORSgTERT00201216 11284 0.0187 (38/2033) 0 * * Os_TE_346333 Chr4 5912212 5912213 - SZ-59_LTR 5600 0.0129 (38/2942) 0 * Os_TE_346332 Os_TE_346332 Chr4 5912208 5912207 + SZ-59_LTR 5600 0.0129 (38/2952) 0 * Os_TE_346333 Os_TE_346331 Chr4 5912046 5911717 + TYPEH 309 0.2519 (746/2961) 1 Intact * Os_TE_346323 Chr4 5904080 5904081 - TRUNCATOR2_LTR 2904 0.1162 (89/766) 0 * * Os_TE_346319 Chr4 5902838 5902839 + RIREX_LTR 8828 0.0007 (2/2973) 0 * * Os_TE_346276 Chr4 5868199 5868200 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * * Os_TE_346268 Chr4 5865931 5865792 + ORSgTEMT01602723 234 0.4781 (1422/2974) 1 Intact * Os_TE_346254 Chr4 5862033 5862032 - ENSPM4_OS 11610 0.2800 (776/2771) 0 * * Os_TE_346253 Chr4 5861975 5861976 - ENSPM_OS 9843 0.5296 (1566/2957) 0 * Os_TE_346252 Os_TE_346252 Chr4 5861973 5861972 + ENSPM_OS 9843 0.5275 (1552/2942) 0 * Os_TE_346253 Os_TE_346249 Chr4 5860383 5860384 + ORSgTEMT01601591 242 0.0252 (75/2976) 0 * * Os_TE_346248 Chr4 5860324 5860323 + ENSPM4_OS 11610 0.0128 (38/2979) 0 * * Os_TE_346240 Chr4 5854891 5854892 - RETRO1_LTR 8314 0.0020 (6/2927) 0 * * Os_TE_346221 Chr4 5848318 5848319 - SC-4_LTR 5218 0.0050 (15/2995) 0 * * Os_TE_346217 Chr4 5846458 5846459 - CLOUD 734 0.0078 (23/2938) 0 * Os_TE_346216 Os_TE_346216 Chr4 5846450 5846449 - CLOUD 734 0.0071 (21/2945) 0 * Os_TE_346217 Os_TE_346215 Chr4 5845754 5845755 + COPIA2-LTR_OS 6433 0.0071 (21/2959) 0 * Os_TE_346214 Os_TE_346214 Chr4 5845750 5845749 - COPIA2-LTR_OS 6433 0.0081 (24/2972) 0 * Os_TE_346215 Os_TE_346211 Chr4 5845595 5845596 + RIRE2_LTR 11306 0.0010 (3/2971) 0 * Os_TE_346210 Os_TE_346210 Chr4 5845591 5845590 - RIRE2_LTR 11306 0.0010 (3/2930) 0 * Os_TE_346211 Os_TE_346202 Chr4 5843925 5844079 + STOWAWAY50_OS 174 0.5008 (1485/2965) 1 Intact * Os_TE_346200 Chr4 5843847 5843846 - ORSgTEMT02000040 196 0.5109 (1497/2930) 0 * * Os_TE_346196 Chr4 5840893 5841135 + STOWAWAY51_OS 246 0.5137 (1476/2873) 1 Intact * Os_TE_346195 Chr4 5840715 5840714 + ORSgTEMT01400031 216 0.0017 (5/2928) 0 * Os_TE_346194 Os_TE_346194 Chr4 5840696 5840697 - ORSgTEMT00501356 145 0.0017 (5/2925) 0 * Os_TE_346195 Os_TE_346187 Chr4 5835131 5827685 + RIREX_LTR 8828 0.3426 (799/2332) 1 Intact Os_TE_346174 Os_TE_346174 Chr4 5827684 5835131 - RIREX_LTR 8828 0.4997 (1486/2974) 1 Intact Os_TE_346187 Os_TE_346173 Chr4 5827544 5827543 - TRUNCATOR 2918 0.0281 (84/2985) 0 * * Os_TE_346170 Chr4 5825861 5825862 + COPIA2-LTR_OS 6433 0.0236 (49/2074) 0 * Os_TE_346169 Os_TE_346169 Chr4 5825857 5825856 - COPIA2-LTR_OS 6433 0.0167 (49/2942) 0 * Os_TE_346170 Os_TE_346152 Chr4 5820351 5820350 - GYPSY-A_LTR 8951 0.0003 (1/2991) 0 * * Os_TE_346149 Chr4 5818042 5818041 - RETROSAT3_LTR 11537 0.0024 (7/2894) 0 * * Os_TE_346147 Chr4 5817695 5817694 - TRUNCATOR2_LTR 2904 0.0013 (4/2983) 0 * * Os_TE_346146 Chr4 5817247 5817246 + OSTE9 421 0.5198 (1548/2978) 0 * * Os_TE_346120 Chr4 5805513 5805514 + ORSiTERTOOT00296 5553 0.0003 (1/2995) 0 * Os_TE_346119 Os_TE_346119 Chr4 5805509 5805508 - SC-3_LTR 5748 0.0003 (1/2996) 0 * Os_TE_346120 Os_TE_346113 Chr4 5799046 5799047 + RETROSAT2LTRA 3112 0.1928 (574/2977) 0 * Os_TE_346112 Os_TE_346112 Chr4 5799042 5799041 - RETROSAT3_LTR 11537 0.1897 (564/2973) 0 * Os_TE_346113 Os_TE_346108 Chr4 5796844 5796845 + COPIA2-LTR_OS 6433 0.0016 (4/2473) 0 * * Os_TE_346076 Chr4 5785312 5785531 + ORSgTEMT01602051 240 0.8211 (2433/2963) 1 Intact * Os_TE_346070 Chr4 5784828 5784827 - RIRE2_LTR 11306 0.1532 (366/2389) 0 * * Os_TE_346049 Chr4 5776145 5776146 - RIRE2_LTR 11306 0.1201 (302/2514) 0 * * Os_TE_346046 Chr4 5775708 5775709 + COPI2_LTR 4733 0.0003 (1/2910) 0 * Os_TE_346045 Os_TE_346045 Chr4 5775704 5775703 - COPI2_LTR 4733 0.0003 (1/2986) 0 * Os_TE_346046 Os_TE_346044 Chr4 5774876 5774877 + OSTE33 1012 0.1609 (481/2990) 0 * * Os_TE_345965 Chr4 5740430 5741223 + ORSiTERTOOT00034 791 0.8907 (2273/2552) 1 Intact * Os_TE_345964 Chr4 5739726 5739727 - COPI2_LTR 4733 0.0004 (1/2706) 0 * * Os_TE_345963 Chr4 5739370 5739369 + NDNA1TNA_OS 334 0.0280 (71/2536) 0 * * Os_TE_345959 Chr4 5737502 5737503 - STOWAWAY18_OS 216 0.0236 (60/2543) 0 * * Os_TE_345951 Chr4 5736018 5736017 - RETRO1_LTR 8314 0.0010 (3/2900) 0 * * Os_TE_345930 Chr4 5733401 5733400 + STOWAWAY51_OS 246 0.0003 (1/2971) 0 * Os_TE_345929 Os_TE_345929 Chr4 5733395 5733396 - STOWAWAY51_OS 246 0.0003 (1/2953) 0 * Os_TE_345930 Os_TE_345928 Chr4 5733113 5733114 + RIREX_LTR 8828 0.0188 (56/2981) 0 * * Os_TE_345923 Chr4 5730893 5730894 - ORSgTERT00201216 11284 0.0010 (3/2973) 0 * Os_TE_345922 Os_TE_345922 Chr4 5730889 5730888 - RIRE2_LTR 11306 0.0010 (3/2973) 0 * Os_TE_345923 Os_TE_345920 Chr4 5730398 5730397 - RIREX_LTR 8828 0.0260 (58/2234) 0 * * Os_TE_345916 Chr4 5728229 5728230 + GYPSY1-LTR_OS 8900 0.2804 (805/2871) 0 * * Os_TE_345914 Chr4 5728073 5728074 + MPING 430 0.0005 (1/2167) 0 * Os_TE_345913 Os_TE_345913 Chr4 5728071 5728070 - MPING 430 0.0003 (1/2908) 0 * Os_TE_345914 Os_TE_345910 Chr4 5727328 5725832 - ORSiCMCM00100013 9728 0.7465 (2214/2966) 1 Intact * Os_TE_345898 Chr4 5725603 5725604 + SZ-67LTR 1540 0.0562 (163/2899) 0 * Os_TE_345897 Os_TE_345897 Chr4 5725599 5725598 - SZ-67LTR 1540 0.0670 (175/2611) 0 * Os_TE_345898 Os_TE_345895 Chr4 5724726 5724725 - F1275 157 0.0099 (22/2229) 0 * * Os_TE_345893 Chr4 5723251 5723252 + ORSiTERTOOT00226 792 0.0007 (2/2996) 0 * * Os_TE_345877 Chr4 5719206 5719207 - MuDR3_OS 8604 0.0688 (62/901) 0 * * Os_TE_345848 Chr4 5705098 5705097 - ORSgTEMT00901071 248 0.0081 (8/983) 0 * * Os_TE_345829 Chr4 5695007 5695006 - TRUNCATOR 2918 0.0086 (8/928) 0 * * Os_TE_345819 Chr4 5691629 5691630 + RIREX_LTR 8828 0.0046 (8/1738) 0 * * Os_TE_345806 Chr4 5683466 5683467 + TRUNCATOR 2918 0.2729 (818/2997) 0 * * Os_TE_345800 Chr4 5680325 5680326 - SZ-22_LTR 4403 0.0008 (2/2590) 0 * Os_TE_345799 Os_TE_345799 Chr4 5680321 5680320 + ORSiTERTOOT00226 792 0.0008 (2/2587) 0 * Os_TE_345800 Os_TE_345769 Chr4 5670648 5670649 + ORSgTEMT00500852 140 0.0017 (5/2979) 0 * * Os_TE_345753 Chr4 5665189 5665190 + ORSiTERTOOT00296 5553 0.0007 (2/2997) 0 * Os_TE_345752 Os_TE_345752 Chr4 5665185 5665184 - SC-3_LTR 5748 0.0007 (2/2996) 0 * Os_TE_345753 Os_TE_345744 Chr4 5657744 5657745 - SC-3_LTR 5748 0.0003 (1/2998) 0 * Os_TE_345743 Os_TE_345743 Chr4 5657740 5657739 + ORSiTERTOOT00296 5553 0.0003 (1/2993) 0 * Os_TE_345744 Os_TE_345734 Chr4 5651447 5651448 + ORSgTEMT01600288 233 0.0003 (1/2946) 0 * * Os_TE_345733 Chr4 5651136 5651135 - ORSiTERTOOT00086 525 0.0003 (1/2949) 0 * * Os_TE_345714 Chr4 5644678 5644677 + ORSgTEMT01602181 239 0.6889 (1975/2867) 0 * * Os_TE_345706 Chr4 5642754 5642755 + SPMLIKE 10989 0.7381 (2069/2803) 0 * Os_TE_345705 Os_TE_345705 Chr4 5642752 5642751 - ORSgTETN00200001 10994 0.7385 (2079/2815) 0 * Os_TE_345706 Os_TE_345667 Chr4 5627450 5627451 + SC-8_LTR 4951 0.0003 (1/2979) 0 * Os_TE_345666 Os_TE_345666 Chr4 5627446 5627445 - SC-8_LTR 4951 0.0003 (1/2971) 0 * Os_TE_345667 Os_TE_345665 Chr4 5626975 5626976 - SC-3_LTR 5748 0.0003 (1/2981) 0 * Os_TE_345664 Os_TE_345664 Chr4 5626971 5626970 + ORSiTERTOOT00296 5553 0.0003 (1/2987) 0 * Os_TE_345665 Os_TE_345658 Chr4 5622018 5622019 - SC-3_LTR 5748 0.0003 (1/2983) 0 * * Os_TE_345652 Chr4 5618569 5618570 + ORSiTERTOOT00296 5553 0.0003 (1/2974) 0 * Os_TE_345651 Os_TE_345651 Chr4 5618565 5618564 - SC-3_LTR 5748 0.0003 (1/2978) 0 * Os_TE_345652 Os_TE_345643 Chr4 5617310 5617311 - SC-3_LTR 5748 0.0003 (1/2927) 0 * Os_TE_345642 Os_TE_345642 Chr4 5617306 5617305 + ORSiTERTOOT00296 5553 0.0003 (1/2930) 0 * Os_TE_345643 Os_TE_345610 Chr4 5594450 5594449 + TRUNCATOR2_LTR 2904 0.0063 (19/2994) 0 * * Os_TE_345609 Chr4 5594083 5594084 + COPIA2-LTR_OS 6433 0.0064 (19/2978) 0 * Os_TE_345608 Os_TE_345608 Chr4 5594079 5594078 - COPIA2-LTR_OS 6433 0.0070 (21/2981) 0 * Os_TE_345609 Os_TE_345605 Chr4 5591323 5591324 - TYPEM 227 0.0027 (8/2983) 0 * Os_TE_345604 Os_TE_345604 Chr4 5591322 5591321 - ORSgTEMT02400179 221 0.0023 (7/2980) 0 * Os_TE_345605 Os_TE_345600 Chr4 5584601 5585984 - ORSgTETN00200001 10994 0.2255 (659/2923) 1 Intact * Os_TE_345556 Chr4 5571303 5571304 - ORSiTERTOOT00086 525 0.0030 (9/2965) 0 * * Os_TE_345551 Chr4 5568142 5568141 + TRUNCATOR 2918 0.1278 (379/2965) 0 * * Os_TE_345536 Chr4 5560111 5560112 + COPI2_LTR 4733 0.0027 (8/2984) 0 * Os_TE_345535 Os_TE_345535 Chr4 5560107 5560106 - COPI2_LTR 4733 0.0027 (8/2978) 0 * Os_TE_345536 Os_TE_345534 Chr4 5558794 5558795 + RIREX_LTR 8828 0.0007 (2/2726) 0 * Os_TE_345533 Os_TE_345533 Chr4 5558790 5558789 - RIREX_LTR 8828 0.0007 (2/2968) 0 * Os_TE_345534 Os_TE_345532 Chr4 5558757 5546038 + RETRO2_LTR 12874 0.2352 (700/2976) 1 Intact Os_TE_345529 Os_TE_345529 Chr4 5546038 5558757 - RETRO2_LTR 12874 0.2374 (710/2991) 1 Intact Os_TE_345532 Os_TE_345527 Chr4 5544567 5544568 - TYPEM 227 0.0003 (1/2995) 0 * Os_TE_345526 Os_TE_345526 Chr4 5544566 5544565 - ORSgTEMT02400179 221 0.0003 (1/2999) 0 * Os_TE_345527 Os_TE_345519 Chr4 5540777 5540776 + NDNA1TNA_OS 334 0.5249 (1561/2974) 0 * * Os_TE_345517 Chr4 5539127 5539126 - ORSgTEMT01600314 233 0.7473 (2114/2829) 0 * Os_TE_345516 Os_TE_345516 Chr4 5539124 5539125 - ORSgTEMT01601934 207 0.0026 (2/769) 0 * Os_TE_345517 Os_TE_345504 Chr4 5533513 5533514 - TRUNCATOR2_LTR 2904 0.0010 (3/2969) 0 * * Os_TE_345499 Chr4 5531492 5531493 + ORSiCMCM00100019 2717 0.0180 (45/2506) 0 * * Os_TE_345475 Chr4 5520569 5520570 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_345474 Os_TE_345474 Chr4 5520565 5520564 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_345475 Os_TE_345418 Chr4 5487425 5487426 + RETRO2A_LTR 12895 0.1314 (389/2960) 0 * * Os_TE_345414 Chr4 5484099 5484100 + TRUNCATOR 2918 0.0004 (1/2792) 0 * * Os_TE_345412 Chr4 5483519 5483520 + ORSiCMCM00100019 2717 0.0010 (3/2959) 0 * * Os_TE_345407 Chr4 5481412 5481413 - ORSgTETN00200001 10994 0.0017 (5/2946) 0 * Os_TE_345406 Os_TE_345406 Chr4 5481410 5481409 + SPMLIKE 10989 0.0027 (8/2938) 0 * Os_TE_345407 Os_TE_345399 Chr4 5477263 5477262 + TRUNCATOR 2918 0.1653 (474/2868) -1 * Os_TE_345398 Os_TE_345398 Chr4 5477262 5477263 - TRUNCATOR 2918 0.1458 (409/2806) 0 * Os_TE_345399 Os_TE_345397 Chr4 5477089 5477090 + RIREX_LTR 8828 0.0061 (18/2953) 0 * Os_TE_345396 Os_TE_345396 Chr4 5477085 5477084 - RIREX_LTR 8828 0.0064 (19/2958) 0 * Os_TE_345397 Os_TE_345394 Chr4 5476794 5476793 - COPIA2-LTR_OS 6433 0.0003 (1/2981) 0 * * Os_TE_345392 Chr4 5476537 5476538 + TRUNCATOR2_LTR 2904 0.1523 (454/2981) 0 * * Os_TE_345281 Chr4 5435779 5435780 - F569 228 0.0075 (22/2937) 0 * Os_TE_345280 Os_TE_345280 Chr4 5435777 5435776 + F569 228 0.0079 (23/2927) 0 * Os_TE_345281 Os_TE_345265 Chr4 5433123 5433122 - ORSgTEMT02000063 217 0.4016 (1177/2931) 0 * * Os_TE_345254 Chr4 5423016 5423017 - COPI2_LTR 4733 0.0017 (5/2980) 0 * * Os_TE_345251 Chr4 5421833 5418586 - TRUNCATOR2_LTR 2904 0.3387 (1013/2991) 1 Intact * Os_TE_345240 Chr4 5416115 5416116 - RIREX_LTR 8828 0.0007 (2/2995) 0 * * Os_TE_345227 Chr4 5414162 5414163 - GYPSY-A_LTR 8951 0.0007 (2/2987) 0 * * Os_TE_345226 Chr4 5413951 5407692 + RIREX_LTR 8828 0.2365 (706/2985) 1 Intact Os_TE_345221 Os_TE_345221 Chr4 5407692 5413951 - RIREX_LTR 8828 0.6991 (732/1047) 1 Intact Os_TE_345226 Os_TE_345209 Chr4 5385734 5385735 - RIREX_LTR 8828 0.0003 (1/2980) 0 * Os_TE_345208 Os_TE_345208 Chr4 5385730 5385729 + RIREX_LTR 8828 0.0003 (1/2980) 0 * Os_TE_345209 Os_TE_345205 Chr4 5384331 5384332 + AMYLTP 383 0.0079 (23/2923) 0 * * Os_TE_345197 Chr4 5382336 5382337 - SZ-9LTR 965 0.0275 (63/2291) 0 * * Os_TE_345196 Chr4 5382282 5382281 - ORSgTEMT01601525 239 0.6544 (1856/2836) 0 * * Os_TE_345193 Chr4 5380116 5380117 - ORSgTETN00200001 10994 0.0053 (16/2991) 0 * Os_TE_345192 Os_TE_345192 Chr4 5380114 5380113 + SPMLIKE 10989 0.0064 (19/2992) 0 * Os_TE_345193 Os_TE_345161 Chr4 5362855 5362854 - ORSiTEMT01000008 242 0.0003 (1/2954) 0 * * Os_TE_345140 Chr4 5354222 5354223 - TYPEM 227 0.0092 (27/2943) 0 * Os_TE_345139 Os_TE_345139 Chr4 5354221 5354220 - ORSgTEMT02400179 221 0.0098 (29/2967) 0 * Os_TE_345140 Os_TE_345133 Chr4 5353964 5354105 - ORSgTEMT00501356 145 0.3121 (923/2957) 1 Intact * Os_TE_345129 Chr4 5353603 5353018 - JOUZHENA 607 0.2274 (589/2590) 1 Intact Os_TE_345128 Os_TE_345128 Chr4 5353018 5353603 + JOUZHENA 607 0.2680 (734/2739) 1 Intact Os_TE_345129 Os_TE_345127 Chr4 5352879 5352880 - AMYLTP 383 0.0003 (1/2861) 0 * * Os_TE_345111 Chr4 5348744 5338301 - RETRO1_LTR 8314 0.2466 (716/2904) 1 Intact Os_TE_345106 Os_TE_345106 Chr4 5338301 5348744 + RETRO2A_LTR 12895 0.2500 (718/2872) 1 Intact Os_TE_345111 Os_TE_345094 Chr4 5335877 5335878 + ORSgTEMT00100128 154 0.0007 (2/2928) 0 * * Os_TE_345085 Chr4 5333577 5333576 + RIREX_LTR 8828 0.0010 (3/2982) 0 * * Os_TE_345072 Chr4 5332027 5332026 + SPMLIKE 10989 0.0184 (55/2982) 0 * * Os_TE_345071 Chr4 5331894 5331895 - RIRE2_LTR 11306 0.0206 (61/2966) 0 * * Os_TE_345068 Chr4 5331831 5331832 - ORSgTEMT01700299 212 0.0106 (31/2930) 0 * * Os_TE_345067 Chr4 5331580 5331581 + SZ-67LTR 1540 0.0864 (252/2915) 0 * * Os_TE_345063 Chr4 5331166 5331473 + SINE03_OS 360 0.5727 (1686/2944) 1 Intact * Os_TE_345062 Chr4 5331143 5331144 + SZ-62LTR 3649 0.0010 (3/2965) 0 * Os_TE_345061 Os_TE_345061 Chr4 5331139 5331138 - SZ-62LTR 3649 0.0011 (3/2844) 0 * Os_TE_345062 Os_TE_345059 Chr4 5330642 5330643 + ORSiTERTOOT00074 4935 0.0003 (1/2985) 0 * * Os_TE_345057 Chr4 5330339 5330340 + TRUNCATOR 2918 0.0010 (3/2985) 0 * * Os_TE_345055 Chr4 5330224 5326857 - GYPSY-A_LTR 8951 0.2421 (717/2962) 1 Solo_LTR Os_TE_345049 Os_TE_345049 Chr4 5326857 5330224 + GYPSY-A_LTR 8951 0.2365 (697/2947) 1 Solo_LTR Os_TE_345055 Os_TE_345046 Chr4 5326797 5326798 - GYPSY-B_LTR 7068 0.0004 (1/2770) 0 * * Os_TE_345044 Chr4 5326663 5326664 + RETRO2A_LTR 12895 0.0003 (1/2974) 0 * * Os_TE_345037 Chr4 5322263 5322604 + SINE03_OS 360 0.8612 (2420/2810) 1 Intact * Os_TE_345035 Chr4 5321946 5321947 + COPI2_LTR 4733 0.0003 (1/2888) 0 * Os_TE_345034 Os_TE_345034 Chr4 5321942 5321941 - COPI2_LTR 4733 0.0004 (1/2849) 0 * Os_TE_345035 Os_TE_345009 Chr4 5310045 5310044 - SZ-58LTR 114 0.0675 (201/2979) 0 * * Os_TE_345005 Chr4 5309333 5309334 - MuDR-5_OS 17471 0.0203 (57/2802) 0 * * Os_TE_345003 Chr4 5309060 5309061 + OSTE33 1012 0.0004 (1/2800) 0 * Os_TE_345002 Os_TE_345002 Chr4 5309051 5309050 - OSTE33 1012 0.0007 (2/2800) 0 * Os_TE_345003 Os_TE_344948 Chr4 5270897 5270896 + TRUNCATOR 2918 0.0147 (44/2998) 0 * Os_TE_344947 Os_TE_344947 Chr4 5270896 5270897 - TRUNCATOR 2918 0.0124 (37/2977) 0 * Os_TE_344948 Os_TE_344945 Chr4 5270472 5270473 + INDITTO 263 0.1473 (406/2757) 0 * * Os_TE_344941 Chr4 5269079 5269080 - ORSgTETNOOT02144 263 0.0278 (83/2985) 0 * Os_TE_344940 Os_TE_344940 Chr4 5269077 5269076 + INDITTO 263 0.0308 (90/2919) 0 * Os_TE_344941 Os_TE_344927 Chr4 5267382 5267381 + OLO24 345 0.0007 (2/2997) 0 * * Os_TE_344912 Chr4 5261876 5261991 - STOWAWAY46_OS 154 0.2537 (757/2984) 1 Intact * Os_TE_344911 Chr4 5261765 5261764 + TYPEU2 382 0.7528 (2208/2933) 0 * * Os_TE_344908 Chr4 5261587 5261586 - ORSgTEMT00900965 216 0.0007 (2/2904) 0 * * Os_TE_344905 Chr4 5260912 5260911 - ORSiTEMT00100008 351 0.7391 (2042/2763) 0 * * Os_TE_344902 Chr4 5256591 5256590 + ORSiTERTOOT00296 5553 0.0003 (1/2977) 0 * * Os_TE_344899 Chr4 5254489 5254488 - TEMPINDAS 4259 0.0003 (1/2982) 0 * * Os_TE_344879 Chr4 5250891 5250892 + RIREX_LTR 8828 0.0261 (78/2994) 0 * Os_TE_344878 Os_TE_344878 Chr4 5250887 5250886 - RIREX_LTR 8828 0.0254 (76/2996) 0 * Os_TE_344879 Os_TE_344874 Chr4 5249832 5249833 + NDNA1TNA_OS 334 0.0007 (2/2974) 0 * Os_TE_344873 Os_TE_344873 Chr4 5249830 5249829 - NDNA1TNA_OS 334 0.0007 (2/2985) 0 * Os_TE_344874 Os_TE_344846 Chr4 5244974 5244973 - MERMITE-17 2759 0.0055 (16/2912) 0 * * Os_TE_344830 Chr4 5240610 5240384 + ORSgTEMT00900471 260 0.2836 (810/2856) 1 Intact Os_TE_344828 Os_TE_344828 Chr4 5240384 5240608 + ORSgTEMT00901798 232 0.2769 (813/2936) 1 Intact Os_TE_344830 Os_TE_344807 Chr4 5228369 5226876 - SZ-38 8643 0.2778 (826/2973) 1 Intact Os_TE_344800 Os_TE_344800 Chr4 5226876 5228369 + SZ-38 8643 0.2799 (832/2972) 1 Intact Os_TE_344807 Os_TE_344764 Chr4 5216635 5216636 - ORSgTEMT01400022 212 0.4139 (1224/2957) 0 * Os_TE_344763 Os_TE_344763 Chr4 5216631 5216630 - STOWAWAY9_OS 235 0.4126 (1218/2952) 0 * Os_TE_344764 Os_TE_344762 Chr4 5216169 5215834 - OLO24 345 0.3605 (1079/2993) 1 Intact * Os_TE_344760 Chr4 5215780 5215446 - ORSgTEMT00600085 364 0.3680 (1071/2910) 1 Intact * Os_TE_344753 Chr4 5214253 5214468 - ORSgTETNOOT01219 231 0.3803 (1063/2795) 1 Intact * Os_TE_344750 Chr4 5211230 5211231 + ORSgTETNOOT01686 252 0.0003 (1/2952) 0 * * Os_TE_344749 Chr4 5210479 5210480 - RIRE2_LTR 11306 0.1718 (444/2584) 0 * Os_TE_344748 Os_TE_344748 Chr4 5210475 5210474 - ORSgTERT00201216 11284 0.1465 (432/2949) 0 * Os_TE_344749 Os_TE_344741 Chr4 5207973 5207972 - NDNA1TNA_OS 334 0.0017 (4/2372) 0 * * Os_TE_344739 Chr4 5207953 5207952 - ORSgTETNOOT01153 258 0.4756 (566/1190) 0 * * Os_TE_344736 Chr4 5207718 5207933 + ORSgTEMT01601122 212 0.8183 (1923/2350) 1 Intact * Os_TE_344733 Chr4 5207493 5207494 + NDNA1TNA_OS 334 0.5016 (1407/2805) 0 * Os_TE_344732 Os_TE_344732 Chr4 5207491 5207490 - NDNA1TNA_OS 334 0.4615 (1313/2845) 0 * Os_TE_344733 Os_TE_344730 Chr4 5207380 5195963 - RIRE2_LTR 11306 0.8267 (2414/2920) 1 Intact Os_TE_344685 Os_TE_344685 Chr4 5195963 5207380 + RIREX_LTR 8828 0.8299 (2434/2933) 1 Intact Os_TE_344730 Os_TE_344675 Chr4 5193858 5193857 + AMYLTP 383 0.4271 (1237/2896) 0 * Os_TE_344674 Os_TE_344674 Chr4 5193855 5193856 - AMYLTP 383 0.4151 (1198/2886) 0 * Os_TE_344675 Os_TE_344671 Chr4 5192875 5192874 + TRUNCATOR 2918 0.0267 (79/2959) 0 * * Os_TE_344668 Chr4 5191507 5191506 - TRUNCATOR 2918 0.4051 (1186/2928) 0 * Os_TE_344667 Os_TE_344667 Chr4 5191506 5191507 + TRUNCATOR 2918 0.4175 (1240/2970) 0 * Os_TE_344668 Os_TE_344666 Chr4 5190978 5190979 - EnSpm-13_OS 11171 0.0003 (1/2954) 0 * * Os_TE_344664 Chr4 5190298 5190297 - ORSiTERT00200154 9386 0.0017 (5/2955) 0 * * Os_TE_344659 Chr4 5186349 5186348 + ORSgTEMT01400031 216 0.0020 (6/2991) 0 * Os_TE_344658 Os_TE_344658 Chr4 5186345 5186346 - ORSgTEMT01400023 211 0.0013 (4/2985) 0 * Os_TE_344659 Os_TE_344655 Chr4 5185083 5185082 - ORSgTEMT01602413 239 0.0010 (3/2938) 0 * Os_TE_344654 Os_TE_344654 Chr4 5185080 5185081 + ORSgTEMT01602413 239 0.0014 (4/2869) 0 * Os_TE_344655 Os_TE_344646 Chr4 5178467 5178466 - ORSgTEMT01601696 238 0.0017 (5/2986) 0 * * Os_TE_344645 Chr4 5178464 5178465 - ORSgTEMT01601493 303 0.0018 (5/2804) 0 * Os_TE_344644 Os_TE_344644 Chr4 5178461 5178460 - ORSgTEMT01600650 234 0.0017 (5/2877) 0 * Os_TE_344645 Os_TE_344626 Chr4 5175318 5175319 - RIREX_LTR 8828 0.0007 (2/2899) 0 * Os_TE_344625 Os_TE_344625 Chr4 5175314 5175313 + RIREX_LTR 8828 0.0007 (2/2990) 0 * Os_TE_344626 Os_TE_344621 Chr4 5174995 5174994 - RIREX_LTR 8828 0.0003 (1/2966) 0 * * Os_TE_344620 Chr4 5174871 5174872 + SPMLIKE 10989 0.0017 (5/2979) 0 * * Os_TE_344616 Chr4 5174162 5174163 - RETROSAT3_LTR 11537 0.0017 (5/2981) 0 * * Os_TE_344601 Chr4 5167401 5167402 - GYPSY1-LTR_OS 8900 0.0387 (116/2994) 0 * * Os_TE_344587 Chr4 5163052 5163053 - ORSgTEMT01601432 239 0.0122 (35/2863) 0 * * Os_TE_344564 Chr4 5157211 5157210 - RETROSAT2LTR 12796 0.0010 (3/2970) 0 * * Os_TE_344559 Chr4 5154565 5154566 + RETRO2_LTR 12874 0.0017 (5/2982) 0 * Os_TE_344558 Os_TE_344558 Chr4 5154561 5154560 - RETRO2_LTR 12874 0.0017 (5/2990) 0 * Os_TE_344559 Os_TE_344547 Chr4 5151896 5151895 - ORSgTEMT02400246 177 0.1294 (331/2558) 0 * * Os_TE_344545 Chr4 5151499 5151498 - COPI1_LTR 4721 0.0331 (94/2844) 0 * * Os_TE_344540 Chr4 5151257 5151258 + NDNA1TNA_OS 334 0.0950 (282/2968) 0 * Os_TE_344539 Os_TE_344539 Chr4 5151255 5151254 - NDNA1TNA_OS 334 0.0987 (290/2938) 0 * Os_TE_344540 Os_TE_344534 Chr4 5150114 5150113 + RETRO2_LTR 12874 0.0072 (20/2772) 0 * * Os_TE_344520 Chr4 5147512 5147513 + DITAILA 257 0.0337 (101/2994) 0 * * Os_TE_344512 Chr4 5137543 5137544 - SZ-25LTR 330 0.0021 (6/2820) 0 * Os_TE_344511 Os_TE_344511 Chr4 5137539 5137538 + COPI1_LTR 4721 0.0020 (6/2943) 0 * Os_TE_344512 Os_TE_344510 Chr4 5137431 5137430 + NDNA1TNA_OS 334 0.7595 (2185/2877) 0.93 * * Os_TE_344509 Chr4 5137043 5137216 - ORSiTEMT00100003 195 0.1058 (300/2835) 1 Intact * Os_TE_344508 Chr4 5136861 5136860 - ORSgTEMT01600639 228 0.0171 (50/2919) 0 * Os_TE_344507 Os_TE_344507 Chr4 5136858 5136859 - ORSgTEMT01601208 238 0.0279 (82/2935) 0 * Os_TE_344508 Os_TE_344506 Chr4 5136593 5136592 + ORSgTETNOOT00908 242 0.0017 (5/2899) 0 * * Os_TE_344503 Chr4 5136466 5136465 - INDITTO 263 0.0830 (237/2854) 0 * * Os_TE_344500 Chr4 5135325 5135326 - ORSgTETNOOT01930 140 0.0174 (51/2931) 0 * * Os_TE_344483 Chr4 5128984 5128983 + ORSgTEMT00600287 363 0.0327 (98/2993) 0 * * Os_TE_344482 Chr4 5128561 5128560 + ORSgTEMT01700505 154 0.0291 (86/2960) 0 * * Os_TE_344476 Chr4 5125669 5125670 + F1275 157 0.0028 (8/2887) 0 * Os_TE_344475 Os_TE_344475 Chr4 5125667 5125666 - F1275 157 0.0021 (6/2853) 0 * Os_TE_344476 Os_TE_344474 Chr4 5124815 5124816 + SC-3_LTR 5748 0.0020 (6/2968) 0 * * Os_TE_344471 Chr4 5123402 5123403 + ORSiTERTOOT00296 5553 0.0013 (4/2966) 0 * * Os_TE_344440 Chr4 5114241 5114242 - AMYLTP 383 0.0021 (6/2820) 0 * Os_TE_344439 Os_TE_344439 Chr4 5114233 5114232 + AMYLTP 383 0.0010 (3/2895) 0 * Os_TE_344440 Os_TE_344438 Chr4 5114021 5114022 - SZ-62LTR 3649 0.0014 (4/2943) 0 * Os_TE_344437 Os_TE_344437 Chr4 5114017 5114016 + SZ-62LTR 3649 0.0014 (4/2929) 0 * Os_TE_344438 Os_TE_344436 Chr4 5113846 5113845 - ORSgTEMT00600484 344 0.0306 (88/2873) 0 * * Os_TE_344426 Chr4 5108731 5108732 + ORSgTEMT00500201 140 0.0020 (6/2996) 0 * * Os_TE_344422 Chr4 5107372 5107371 + OSTE33 1012 0.0058 (11/1912) 0 * * Os_TE_344421 Chr4 5107351 5107352 - TRUNCATOR2_LTR 2904 0.0027 (5/1839) 0 * * Os_TE_344419 Chr4 5106703 5106704 + SPMLIKE 10989 0.3234 (951/2941) 0 * Os_TE_344418 Os_TE_344418 Chr4 5106700 5106699 - ORSgTETN00200001 10994 0.3173 (932/2937) 0 * Os_TE_344419 Os_TE_344417 Chr4 5106269 5106270 + RIRE3A_LTR 10580 0.0399 (115/2880) 0 * Os_TE_344416 Os_TE_344416 Chr4 5106265 5106264 - RIRE3A_LTR 10580 0.0424 (122/2880) 0 * Os_TE_344417 Os_TE_344409 Chr4 5105574 5105575 - OSTE15 1168 0.3937 (1163/2954) 0 * Os_TE_344408 Os_TE_344408 Chr4 5105570 5105569 + OSMU5 4881 0.3875 (1147/2960) 0 * Os_TE_344409 Os_TE_344407 Chr4 5105307 5105306 + CACTA-B 1103 0.0020 (6/2983) 0 * Os_TE_344406 Os_TE_344406 Chr4 5105306 5105307 - SPMLIKE 10989 0.0017 (5/2983) 0 * Os_TE_344407 Os_TE_344405 Chr4 5105191 5105192 + COPIA2-LTR_OS 6433 0.0010 (3/2984) 0 * Os_TE_344404 Os_TE_344404 Chr4 5105187 5105186 - COPIA2-LTR_OS 6433 0.0010 (3/2981) 0 * Os_TE_344405 Os_TE_344403 Chr4 5105122 5105123 - HATOS1 3488 0.0065 (19/2938) 0 * Os_TE_344402 Os_TE_344402 Chr4 5105115 5105114 + QINNIU 528 0.0077 (23/2971) 0 * Os_TE_344403 Os_TE_344396 Chr4 5103485 5103486 + RIRE3_LTR 12054 0.0085 (25/2938) 0 * Os_TE_344395 Os_TE_344395 Chr4 5103481 5103480 - RIRE3_LTR 12054 0.0093 (27/2918) 0 * Os_TE_344396 Os_TE_344387 Chr4 5100644 5100645 + SZ-48LTR 3632 0.3885 (1085/2793) 0 * * Os_TE_344386 Chr4 5100275 5100276 + SPMLIKE 10989 0.0153 (44/2868) 0 * * Os_TE_344381 Chr4 5097381 5097382 - AMYLTP 383 0.0010 (3/2978) 0 * Os_TE_344380 Os_TE_344380 Chr4 5097373 5097372 + AMYLTP 383 0.0010 (3/2907) 0 * Os_TE_344381 Os_TE_344379 Chr4 5096858 5096859 - COPIA2-LTR_OS 6433 0.0021 (6/2857) 0 * Os_TE_344378 Os_TE_344378 Chr4 5096854 5096853 + COPIA2-LTR_OS 6433 0.0021 (6/2865) 0 * Os_TE_344379 Os_TE_344377 Chr4 5096361 5096360 - TRUNCATOR 2918 0.0045 (13/2888) 0 * Os_TE_344376 Os_TE_344376 Chr4 5096360 5096361 + TRUNCATOR 2918 0.0045 (13/2890) 0 * Os_TE_344377 Os_TE_344375 Chr4 5096257 5096256 - ORSgTEMT01600520 239 0.0010 (3/2924) 0 * * Os_TE_344298 Chr4 5065398 5065399 + RETROSAT4_LTR 13504 0.0089 (26/2934) 0 * * Os_TE_344268 Chr4 5059181 5059182 - ORSgTETN00200001 10994 0.0372 (106/2851) 0 * * Os_TE_344257 Chr4 5056027 5056026 + TRUNCATOR 2918 0.7086 (2055/2900) 0 * * Os_TE_344222 Chr4 5047910 5047911 - ORSgTERT00201216 11284 0.0035 (10/2848) 0 * Os_TE_344221 Os_TE_344221 Chr4 5047906 5047905 - RIRE2_LTR 11306 0.0032 (9/2847) 0 * Os_TE_344222 Os_TE_344207 Chr4 5044032 5044031 - TRUNCATOR 2918 0.0090 (26/2902) 0 * Os_TE_344206 Os_TE_344206 Chr4 5044031 5044032 + TRUNCATOR 2918 0.0093 (27/2906) 0 * Os_TE_344207 Os_TE_344192 Chr4 5033230 5033231 - RIRE2_LTR 11306 0.0021 (6/2798) 0 * * Os_TE_344183 Chr4 5029434 5029433 - RIRE2_LTR 11306 0.0004 (1/2401) -1 * * Os_TE_344157 Chr4 5012573 5012574 + SPMLIKE 10989 0.0021 (6/2862) 0 * * Os_TE_344154 Chr4 5011350 5011351 - TRUNCATOR2_LTR 2904 0.0021 (6/2835) 0 * Os_TE_344153 Os_TE_344153 Chr4 5011346 5011345 + ORSiTERTOOT00028 8600 0.0018 (5/2833) 0 * Os_TE_344154 Os_TE_344144 Chr4 5010165 5010164 + ORSgTETNOOT00544 147 0.0017 (5/2911) 0 * * Os_TE_344095 Chr4 4998513 4998512 + RETROSAT2LTR 12796 0.0897 (229/2552) 0 * * Os_TE_344086 Chr4 4997022 4997023 - MPING 430 0.0003 (1/2927) 0 * Os_TE_344085 Os_TE_344085 Chr4 4997020 4997019 + MPING 430 0.0003 (1/2897) 0 * Os_TE_344086 Os_TE_344084 Chr4 4996840 4990629 + RIREX_LTR 8828 0.2237 (639/2856) 1 Intact Os_TE_344083 Os_TE_344083 Chr4 4990629 4996840 - RIREX_LTR 8828 0.2412 (634/2628) 1 Intact Os_TE_344084 Os_TE_344051 Chr4 4976652 4978132 + SZ-19LTR 1513 0.5904 (699/1184) 1 Intact * Os_TE_344020 Chr4 4959550 4944434 - ENSPM4_OS 11610 0.7006 (702/1002) 1 Intact * Os_TE_344007 Chr4 4943846 4943647 + ORSgTEMT01601122 212 0.8987 (2503/2785) 1 Intact * Os_TE_344002 Chr4 4943172 4943173 + COPI2_LTR 4733 0.0046 (12/2627) 0 * Os_TE_344001 Os_TE_344001 Chr4 4943168 4943167 - COPI2_LTR 4733 0.0042 (11/2629) 0 * Os_TE_344002 Os_TE_343994 Chr4 4940660 4940659 + RIREX_LTR 8828 0.0083 (22/2651) 0 * * Os_TE_343937 Chr4 4923690 4923691 + MUDRN5_OS 374 0.0022 (3/1387) 0 * * Os_TE_343935 Chr4 4923297 4923298 + ORSgTEMT03600017 555 0.0034 (5/1481) 0 * * Os_TE_343920 Chr4 4920062 4920063 + TRUNCATOR 2918 0.0017 (3/1794) 0 * * Os_TE_343919 Chr4 4920034 4920033 + CPSC4B_LTR 5343 0.0162 (28/1729) -1 * * Os_TE_343916 Chr4 4918801 4918802 + SPMLIKE 10989 0.0126 (20/1590) 0 * * Os_TE_343911 Chr4 4917653 4917652 - TRUNCATOR2_LTR 2904 0.0424 (104/2455) 0 * * Os_TE_343909 Chr4 4917401 4917402 + MuDR2_OS 6770 0.0305 (73/2393) 0 * Os_TE_343908 Os_TE_343908 Chr4 4917392 4917391 - MuDR2_OS 6770 0.0277 (68/2454) 0 * Os_TE_343909 Os_TE_343907 Chr4 4917380 4917379 - ORSgTEMT02400240 223 0.0707 (171/2420) 0 * * Os_TE_343906 Chr4 4917036 4915531 - SZ-19LTR 1513 0.8667 (1755/2025) 1 Intact * Os_TE_343901 Chr4 4915384 4915385 - RIREX_LTR 8828 0.0109 (27/2487) 0 * * Os_TE_343898 Chr4 4914512 4914513 + AMYLTP 383 0.0069 (14/2015) 0 * * Os_TE_343886 Chr4 4911285 4911284 + TRUNCATOR 2918 0.0014 (3/2203) 0 * * Os_TE_343885 Chr4 4911150 4908959 - DS-RICE4N 715 0.8809 (2145/2435) 1 Intact * Os_TE_343865 Chr4 4899053 4899054 + SZ-50_LTR 11691 0.0026 (6/2277) 0 * Os_TE_343864 Os_TE_343864 Chr4 4899049 4899048 - SZ-50_LTR 11691 0.0027 (6/2206) 0 * Os_TE_343865 Os_TE_343830 Chr4 4873936 4873935 - ENSPM4_OS 11610 0.0005 (1/2191) 0 * * Os_TE_343824 Chr4 4872800 4872799 - RIREX_LTR 8828 0.0025 (6/2448) 0 * * Os_TE_343800 Chr4 4825044 4835096 - ENSPM5_OS 9581 0.2106 (629/2986) 1 Intact * Os_TE_343791 Chr4 4821366 4821367 + GYPSY-A_LTR 8951 0.0009 (2/2205) 0 * Os_TE_343790 Os_TE_343790 Chr4 4821362 4821361 - GYPSY-A_LTR 8951 0.0009 (2/2208) 0 * Os_TE_343791 Os_TE_343787 Chr4 4819132 4819131 - TRUNCATOR2_LTR 2904 0.0009 (2/2198) 0 * * Os_TE_343785 Chr4 4816703 4816704 - SZ-36LTR 5825 0.0063 (14/2208) 0 * * Os_TE_343782 Chr4 4816496 4816299 + F524 291 0.8695 (2192/2521) 1 Intact Os_TE_343780 Os_TE_343780 Chr4 4816299 4816495 - F524 291 0.8675 (2173/2505) 1 Intact Os_TE_343782 Os_TE_343751 Chr4 4805889 4805888 - ORSgTETN00200001 10994 0.1268 (317/2500) 0 * * Os_TE_343749 Chr4 4805812 4805813 - ORSgTERT00201216 11284 0.0663 (166/2503) 0 * Os_TE_343748 Os_TE_343748 Chr4 4805808 4805807 - RIRE2_LTR 11306 0.0645 (162/2511) 0 * Os_TE_343749 Os_TE_343745 Chr4 4805654 4805653 - MUDRN3_OS 903 0.0068 (17/2518) 0 * * Os_TE_343741 Chr4 4804288 4804287 + RIREX_LTR 8828 0.0004 (1/2518) 0 * * Os_TE_343727 Chr4 4799249 4799248 + ORSiTETNOOT00107 906 0.0276 (79/2860) 0 * * Os_TE_343721 Chr4 4794122 4794121 - ORSgTEMT02400179 221 0.5192 (1486/2862) 0 * Os_TE_343720 Os_TE_343720 Chr4 4794120 4794121 - ORSgTEMT02400245 225 0.4872 (1327/2724) 0 * Os_TE_343721 Os_TE_343719 Chr4 4793664 4793665 + SPMLIKE 10989 0.0023 (4/1720) -1 * Os_TE_343718 Os_TE_343718 Chr4 4793662 4793661 - ORSgTETN00200001 10994 0.0106 (18/1692) -1 * Os_TE_343719 Os_TE_343714 Chr4 4793243 4793242 - STOWAWAY51_OS 246 0.0374 (106/2835) 0 * Os_TE_343713 Os_TE_343713 Chr4 4793237 4793238 + STOWAWAY51_OS 246 0.0460 (132/2872) 0 * Os_TE_343714 Os_TE_343683 Chr4 4776875 4776876 - TRUNCATOR2_LTR 2904 0.0003 (1/2964) 0 * Os_TE_343682 Os_TE_343682 Chr4 4776870 4776869 + TRUNCATOR2_LTR 2904 0.0003 (1/2969) 0 * Os_TE_343683 Os_TE_343680 Chr4 4776523 4776522 - CRM-LTR_OS 7749 0.0003 (1/2951) 0 * * Os_TE_343678 Chr4 4775497 4775498 + INDITTO 263 0.0007 (2/2836) 0 * * Os_TE_343660 Chr4 4769924 4769925 - MUDRN1_OS 764 0.0178 (53/2982) 0 * * Os_TE_343659 Chr4 4769486 4769485 - ORSgTEMT01601432 239 0.0003 (1/2988) 0 * * Os_TE_343637 Chr4 4767051 4767052 - TYPEM 227 0.0141 (42/2983) 0 * Os_TE_343636 Os_TE_343636 Chr4 4767050 4767049 - ORSgTEMT02400179 221 0.0137 (41/2982) 0 * Os_TE_343637 Os_TE_343620 Chr4 4761938 4761939 - ORSgTETN00200001 10994 0.0357 (105/2944) 0 * * Os_TE_343612 Chr4 4760608 4760607 - SZ-40LTR 2465 0.0020 (6/2990) 0 * * Os_TE_343611 Chr4 4760258 4760259 - RETROSAT3_LTR 11537 0.0021 (6/2925) 0 * * Os_TE_343572 Chr4 4742854 4742853 - MuDR4_OS 7610 0.0003 (1/2971) 0 * * Os_TE_343555 Chr4 4733196 4733197 - MuDR4_OS 7610 0.0074 (22/2978) 0 * Os_TE_343554 Os_TE_343554 Chr4 4733187 4733186 - MuDR4_OS 7610 0.0067 (20/2989) 0 * Os_TE_343555 Os_TE_343551 Chr4 4731911 4731910 + ORSgTETNOOT01668 244 0.0226 (67/2967) 0 * * Os_TE_343530 Chr4 4723864 4723863 - TRUNCATOR 2918 0.0017 (5/2991) 0 * * Os_TE_343516 Chr4 4721964 4721965 + RIREX_LTR 8828 0.0011 (3/2673) 0 * Os_TE_343515 Os_TE_343515 Chr4 4721960 4721959 - RIREX_LTR 8828 0.0019 (5/2658) 0 * Os_TE_343516 Os_TE_343509 Chr4 4719521 4719520 - RETROSAT5_LTR 13878 0.0050 (15/2980) 0 * * Os_TE_343455 Chr4 4704296 4704297 + AMYLTP 383 0.0080 (24/2983) 0 * * Os_TE_343454 Chr4 4704289 4704290 - RIREX_LTR 8828 0.0010 (3/2987) 0 * * Os_TE_343453 Chr4 4704288 4704287 - AMYLTP 383 0.0080 (24/2986) 0 * * Os_TE_343452 Chr4 4704028 4704029 + COPIA2-LTR_OS 6433 0.0003 (1/2978) 0 * Os_TE_343451 Os_TE_343451 Chr4 4704024 4704023 - COPIA2-LTR_OS 6433 0.0003 (1/2981) 0 * Os_TE_343452 Os_TE_343446 Chr4 4702891 4702892 - RETROSAT5_LTR 13878 0.0020 (6/2970) 0 * * Os_TE_343444 Chr4 4702808 4702807 - SZ-62LTR 3649 0.5395 (1603/2971) 0 * * Os_TE_343429 Chr4 4699384 4699385 + COPIA2-LTR_OS 6433 0.0007 (2/2909) 0 * Os_TE_343428 Os_TE_343428 Chr4 4699380 4699379 - COPIA2-LTR_OS 6433 0.0010 (3/2917) 0 * Os_TE_343429 Os_TE_343415 Chr4 4695483 4695484 - ORSiTETNOOT00134 607 0.0007 (2/2826) 0 * * Os_TE_343413 Chr4 4694649 4694650 - ORSgTERT00201216 11284 0.0013 (4/2997) 0 * * Os_TE_343411 Chr4 4694416 4694415 + SPMLIKE 10989 0.0003 (1/2988) 0 * * Os_TE_343407 Chr4 4693218 4693217 + F569 228 0.0007 (2/2932) 0 * * Os_TE_343406 Chr4 4693126 4693127 + NDNA1TNA_OS 334 0.0003 (1/2931) 0 * Os_TE_343405 Os_TE_343405 Chr4 4693124 4693123 - NDNA1TNA_OS 334 0.0004 (1/2855) 0 * Os_TE_343406 Os_TE_343402 Chr4 4691237 4691238 - RIREX_LTR 8828 0.0003 (1/2970) 0 * Os_TE_343401 Os_TE_343401 Chr4 4691233 4691232 + RIREX_LTR 8828 0.0003 (1/2984) 0 * Os_TE_343402 Os_TE_343392 Chr4 4686233 4686232 + RIRE3A_LTR 10580 0.0016 (4/2541) 0 * * Os_TE_343375 Chr4 4678796 4678795 - TRUNCATOR 2918 0.4005 (1183/2954) 0 * Os_TE_343374 Os_TE_343374 Chr4 4678795 4678796 - TRUNCATOR2_LTR 2904 0.4096 (1225/2991) 0 * Os_TE_343375 Os_TE_343373 Chr4 4678470 4678471 - RETROSAT2LTR 12796 0.0003 (1/2986) 0 * * Os_TE_343370 Chr4 4677521 4677522 + TRUNCATOR 2918 0.3843 (576/1499) -1 * * Os_TE_343359 Chr4 4673502 4673503 + MuDR2_OS 6770 0.0071 (21/2968) 0 * * Os_TE_343350 Chr4 4671832 4671833 - TYPEM 227 0.3087 (916/2967) 0 * Os_TE_343349 Os_TE_343349 Chr4 4671831 4671830 - ORSgTEMT02400179 221 0.3097 (912/2945) 0 * Os_TE_343350 Os_TE_343347 Chr4 4671182 4671183 + RIREX_LTR 8828 0.0007 (2/2993) 0 * * Os_TE_343326 Chr4 4662809 4662808 + SPMLIKE 10989 0.0003 (1/2966) 0 * * Os_TE_343320 Chr4 4660579 4660580 + RETRO2A_LTR 12895 0.2386 (713/2988) 0 * Os_TE_343319 Os_TE_343319 Chr4 4660575 4660574 - RETRO2_LTR 12874 0.2371 (710/2995) 0 * Os_TE_343320 Os_TE_343318 Chr4 4659781 4659543 + ORSgTETNOOT01522 239 0.1840 (547/2973) 1 Intact Os_TE_343317 Os_TE_343317 Chr4 4659540 4659775 + ORSgTETNOOT00908 242 0.1904 (569/2989) 1 Intact Os_TE_343318 Os_TE_343316 Chr4 4659255 4659256 + TRUNCATOR 2918 0.0027 (8/2986) 0 * * Os_TE_343303 Chr4 4655921 4655922 - TRUNCATOR2_LTR 2904 0.0027 (8/2927) 0 * * Os_TE_343302 Chr4 4655824 4655825 + SPMLIKE 10989 0.0363 (98/2701) 0 * Os_TE_343301 Os_TE_343301 Chr4 4655822 4655821 - ORSgTETN00200001 10994 0.0424 (122/2879) 0 * Os_TE_343302 Os_TE_343295 Chr4 4654486 4654485 - ORSiTEMT01000008 242 0.0004 (1/2782) 0 * * Os_TE_343288 Chr4 4653120 4653121 + COPIA2-LTR_OS 6433 0.0010 (3/2977) 0 * Os_TE_343287 Os_TE_343287 Chr4 4653116 4653115 - COPIA2-LTR_OS 6433 0.0010 (3/2979) 0 * Os_TE_343288 Os_TE_343286 Chr4 4651364 4651365 - ORSgTEMT02400179 221 0.0027 (8/2976) 0 * Os_TE_343285 Os_TE_343285 Chr4 4651363 4651362 - TYPEM 227 0.0024 (7/2978) 0 * Os_TE_343286 Os_TE_343278 Chr4 4648893 4648573 + ORSgTEMT00100531 325 0.1404 (321/2286) 1 Intact Os_TE_343277 Os_TE_343277 Chr4 4648558 4648891 + NDNA1TNA_OS 334 0.2150 (590/2744) 1 Intact Os_TE_343278 Os_TE_343264 Chr4 4644309 4644308 + COPI2_LTR 4733 0.0003 (1/2923) 0 * * Os_TE_343262 Chr4 4644228 4644227 - ORSgTERT00201216 11284 0.0081 (24/2950) 0 * * Os_TE_343255 Chr4 4641121 4641120 + ORSgTEMT00500512 153 0.0297 (86/2900) 0 * * Os_TE_343254 Chr4 4639781 4639782 - RETRO1_LTR 8314 0.0016 (4/2495) 0 * Os_TE_343253 Os_TE_343253 Chr4 4639777 4639776 + ORSgTERTOOT00009 12852 0.0016 (4/2564) 0 * Os_TE_343254 Os_TE_343244 Chr4 4638366 4638367 - COPIA2-LTR_OS 6433 0.0021 (6/2893) 0 * * Os_TE_343239 Chr4 4637873 4637874 - ORSgTETN00200001 10994 0.0003 (1/2945) 0 * * Os_TE_343229 Chr4 4637127 4637128 - ORSiTETNOOT00200 3563 0.0038 (11/2921) 0 * Os_TE_343228 Os_TE_343228 Chr4 4637120 4637119 + TWIF 586 0.0038 (11/2919) 0 * Os_TE_343229 Os_TE_343227 Chr4 4637031 4637030 + ORSiTERTOOT00226 792 0.0003 (1/2917) 0 * * Os_TE_343226 Chr4 4636984 4636985 + SPMLIKE 10989 0.0003 (1/2914) 0 * * Os_TE_343191 Chr4 4606334 4606333 - SZ-67LTR 1540 0.0024 (7/2879) 0 * * Os_TE_343185 Chr4 4605066 4605067 + ORSiTERTOOT00226 792 0.0003 (1/2993) 0 * * Os_TE_343183 Chr4 4604983 4604982 - Cassandra_OS-LTR 764 0.0004 (1/2583) 0 * * Os_TE_343182 Chr4 4604757 4604758 - TRUNCATOR2_LTR 2904 0.0020 (6/2988) 0 * Os_TE_343181 Os_TE_343181 Chr4 4604753 4604752 + ORSiTERTOOT00028 8600 0.0020 (6/2989) 0 * Os_TE_343182 Os_TE_343173 Chr4 4601464 4601463 - RETROSAT5_LTR 13878 0.2543 (747/2937) 0 * * Os_TE_343163 Chr4 4597192 4597193 - RIRE2_LTR 11306 0.0017 (5/2978) 0 * Os_TE_343162 Os_TE_343162 Chr4 4597188 4597187 - ORSgTERT00201216 11284 0.0023 (7/2985) 0 * Os_TE_343163 Os_TE_343161 Chr4 4596915 4596916 - ORSgTEMT02000041 194 0.2682 (789/2942) 0 * * Os_TE_343160 Chr4 4596445 4596446 + EnSpm-14_OS 11216 0.0111 (33/2968) 0 * * Os_TE_343157 Chr4 4595943 4595942 + ORSgTEMT01601639 236 0.0020 (6/2979) 0 * * Os_TE_343156 Chr4 4594995 4594996 - ENSPM4_OS 11610 0.0077 (22/2843) 0 * * Os_TE_343155 Chr4 4594869 4594870 + SPMLIKE 10989 0.1846 (524/2838) 0 * Os_TE_343154 Os_TE_343154 Chr4 4594867 4594866 - ORSgTETN00200001 10994 0.1654 (460/2781) 0 * Os_TE_343155 Os_TE_343149 Chr4 4593681 4593682 + SZ-40LTR 2465 0.0034 (10/2968) 0 * * Os_TE_343125 Chr4 4587747 4587748 - COPIA2-LTR_OS 6433 0.0003 (1/2948) 0 * Os_TE_343124 Os_TE_343124 Chr4 4587743 4587742 + COPIA2-LTR_OS 6433 0.0003 (1/2953) 0 * Os_TE_343125 Os_TE_343103 Chr4 4572340 4572339 - MuDR-5_OS 17471 0.0681 (200/2938) 0 * * Os_TE_343100 Chr4 4569876 4569877 - RIREX_LTR 8828 0.0003 (1/2965) 0 * Os_TE_343099 Os_TE_343099 Chr4 4569872 4569871 + RIREX_LTR 8828 0.0003 (1/2969) 0 * Os_TE_343100 Os_TE_343060 Chr4 4555140 4555014 + TELIA 141 0.1439 (350/2433) 1 Intact * Os_TE_343048 Chr4 4553704 4550812 + ORSiCMCM00100019 2717 0.0819 (215/2624) 1 Intact * Os_TE_343029 Chr4 4548407 4548408 + ORSgTETNOOT01668 244 0.0011 (3/2741) -1 * * Os_TE_343028 Chr4 4548296 4548295 - STOWAWAY51_OS 246 0.0004 (1/2798) 0 * * Os_TE_343024 Chr4 4547850 4547851 - ORSgTEMT02400179 221 0.0128 (38/2959) 0 * * Os_TE_343023 Chr4 4547593 4547594 - MPING 430 0.0003 (1/2955) 0 * Os_TE_343022 Os_TE_343022 Chr4 4547591 4547590 + MPING 430 0.0003 (1/2951) 0 * Os_TE_343023 Os_TE_343018 Chr4 4544668 4544669 + INDITTO 263 0.0074 (22/2974) 0 * * Os_TE_343011 Chr4 4542473 4542474 - RIRE2_LTR 11306 0.0089 (25/2808) 0 * Os_TE_343010 Os_TE_343010 Chr4 4542469 4542468 - ORSgTERT00201216 11284 0.0091 (26/2857) 0 * Os_TE_343011 Os_TE_343000 Chr4 4540757 4540756 + F569 228 0.0007 (2/2953) 0 * * Os_TE_342979 Chr4 4527463 4540417 - RETRO2_LTR 12874 0.2257 (288/1276) 0.86 Intact * Os_TE_342977 Chr4 4526875 4526876 + OSTONOR1_LTR 6440 0.0003 (1/2932) 0 * * Os_TE_342974 Chr4 4526273 4526272 - RETRO2_LTR 12874 0.0030 (9/2968) 0 * * Os_TE_342972 Chr4 4525711 4525712 + RETROSAT3_LTR 11537 0.0070 (21/2979) 0 * Os_TE_342971 Os_TE_342971 Chr4 4525707 4525706 - RETROSAT3_LTR 11537 0.0077 (23/2975) 0 * Os_TE_342972 Os_TE_342970 Chr4 4525602 4525603 + RIREX_LTR 8828 0.0007 (2/2980) 0 * * Os_TE_342962 Chr4 4524203 4524204 + HARB-1_OS 5166 0.0165 (48/2904) 0 * * Os_TE_342958 Chr4 4523585 4523586 - MPING 430 0.0003 (1/2923) 0 * * Os_TE_342956 Chr4 4523100 4523101 + ORSgTETNOOT01998 254 0.0014 (4/2936) 0 * Os_TE_342955 Os_TE_342955 Chr4 4523098 4523097 + ORSgTETNOOT01834 251 0.0014 (4/2932) 0 * Os_TE_342956 Os_TE_342954 Chr4 4523080 4523081 - TELIA 141 0.0047 (14/2969) 0 * Os_TE_342953 Os_TE_342953 Chr4 4523072 4523071 + TELIA 141 0.0044 (13/2970) 0 * Os_TE_342954 Os_TE_342952 Chr4 4523043 4523044 + TWIFBIG 3567 0.0071 (21/2973) 0 * Os_TE_342951 Os_TE_342951 Chr4 4523036 4523035 - ORSiTETNOOT00216 3569 0.0081 (24/2981) 0 * Os_TE_342952 Os_TE_342933 Chr4 4522080 4522079 + SZ-62LTR 3649 0.0017 (5/2936) 0 * * Os_TE_342926 Chr4 4521521 4521520 - ORSiTETNOOT00134 607 0.0003 (1/2887) 0 * * Os_TE_342924 Chr4 4521509 4521508 - ORSiTETNOOT00200 3563 0.0143 (41/2870) 0 * * Os_TE_342923 Chr4 4521425 4521426 - TNR2A 152 0.0688 (192/2792) 0 * * Os_TE_342922 Chr4 4521412 4521411 + DS-RICE4N 715 0.0018 (5/2765) 0 * * Os_TE_342921 Chr4 4521359 4521358 + RIRE2_LTR 11306 0.0004 (1/2406) 0 * * Os_TE_342901 Chr4 4519561 4519562 + ORSiCMCM00100019 2717 0.0119 (33/2783) 0 * * Os_TE_342887 Chr4 4518167 4518166 + TRUNCATOR 2918 0.2213 (658/2974) 0 * * Os_TE_342885 Chr4 4518103 4518104 + GYPSY-A_LTR 8951 0.0010 (3/2955) 0 * Os_TE_342884 Os_TE_342884 Chr4 4518099 4518098 - SZ-40LTR 2465 0.0010 (3/2947) 0 * Os_TE_342885 Os_TE_342883 Chr4 4517738 4517739 + ORSgTEMT00600124 361 0.1234 (353/2861) 0 * Os_TE_342882 Os_TE_342882 Chr4 4517736 4517735 + CASTAWAY 364 0.1274 (364/2858) 0 * Os_TE_342883 Os_TE_342865 Chr4 4514840 4514841 - RETROSAT2LTRA 3112 0.0389 (115/2954) 0 * * Os_TE_342854 Chr4 4514339 4514338 - SZ-35LTR 3853 0.0021 (6/2915) 0 * * Os_TE_342853 Chr4 4514283 4514282 + DASIA-2 1198 0.0031 (9/2917) 0 * * Os_TE_342852 Chr4 4514271 4514270 + RETRO2A_LTR 12895 0.0007 (2/2883) 0 * * Os_TE_342850 Chr4 4513915 4514247 - NDNA1TNA_OS 334 0.1459 (428/2934) 1 Intact * Os_TE_342842 Chr4 4509609 4509610 - COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * Os_TE_342841 Os_TE_342841 Chr4 4509605 4509604 + COPIA2-LTR_OS 6433 0.0003 (1/2986) 0 * Os_TE_342842 Os_TE_342804 Chr4 4498872 4498871 - RETROSAT3_LTR 11537 0.0014 (4/2934) 0 * * Os_TE_342796 Chr4 4497341 4497340 - RIREX_LTR 8828 0.0027 (8/2934) 0 * * Os_TE_342795 Chr4 4497165 4497166 - TRUNCATOR2_LTR 2904 0.0010 (3/2876) 0 * Os_TE_342794 Os_TE_342794 Chr4 4497161 4497160 + ORSiCMCM00100019 2717 0.0007 (2/2878) 0 * Os_TE_342795 Os_TE_342789 Chr4 4495957 4495956 - ORSgTEMT00400006 152 0.0004 (1/2844) 0 * * Os_TE_342767 Chr4 4490937 4490936 + GYPSY-A_LTR 8951 0.0021 (6/2812) 0 * * Os_TE_342760 Chr4 4489870 4489869 - RIRE2_LTR 11306 0.0004 (1/2851) 0 * * Os_TE_342727 Chr4 4462274 4462275 - TRUNCATOR 2918 0.0010 (3/2861) 0 * * Os_TE_342723 Chr4 4460943 4460942 + NDNA1TNA_OS 334 0.0010 (3/2992) 0 * Os_TE_342722 Os_TE_342722 Chr4 4460941 4460942 - NDNA1TNA_OS 334 0.0010 (3/2988) 0 * Os_TE_342723 Os_TE_342721 Chr4 4458943 4458942 - COWARD 200 0.0024 (7/2861) 0 * * Os_TE_342716 Chr4 4458282 4458281 + STOWAWAY47_OS 148 0.0014 (4/2854) 0 * * Os_TE_342713 Chr4 4456678 4456679 + SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_342712 Os_TE_342712 Chr4 4456674 4456673 - SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_342713 Os_TE_342707 Chr4 4452637 4452636 - SETARIA1 1293 0.0085 (25/2953) 0 * * Os_TE_342700 Chr4 4451601 4451602 - RETROSAT3_LTR 11537 0.0064 (19/2984) 0 * Os_TE_342699 Os_TE_342699 Chr4 4451597 4451596 + RETROSAT2LTR 12796 0.0060 (18/2990) 0 * Os_TE_342700 Os_TE_342696 Chr4 4449942 4449943 + TWIFBIG 3567 0.0073 (21/2873) 0 * Os_TE_342695 Os_TE_342695 Chr4 4449935 4449934 - ORSiTETNOOT00200 3563 0.0064 (19/2970) 0 * Os_TE_342696 Os_TE_342691 Chr4 4448716 4448717 - SC-8_LTR 4951 0.0003 (1/2991) 0 * Os_TE_342690 Os_TE_342690 Chr4 4448712 4448711 + SC-8_LTR 4951 0.0003 (1/2976) 0 * Os_TE_342691 Os_TE_342683 Chr4 4445477 4445478 - TRUNCATOR2_LTR 2904 0.0678 (203/2992) 0 * Os_TE_342682 Os_TE_342682 Chr4 4445473 4445472 + ORSiCMCM00100019 2717 0.0657 (196/2985) 0 * Os_TE_342683 Os_TE_342679 Chr4 4445398 4444549 - RIRE7_LTR 7615 0.7321 (2192/2994) 1 Solo_LTR * Os_TE_342668 Chr4 4444551 4445399 + RIRE7_LTR 7615 0.7952 (2376/2988) 1 Solo_LTR * Os_TE_342660 Chr4 4439160 4439161 + TREP220 109 0.3579 (1064/2973) 0 * * Os_TE_342659 Chr4 4438362 4438363 + ORSgTETNOOT01930 140 0.0214 (64/2997) 0 * Os_TE_342658 Os_TE_342658 Chr4 4438360 4438359 - ORSgTETNOOT01930 140 0.0214 (64/2997) 0 * Os_TE_342659 Os_TE_342649 Chr4 4436076 4436075 + SZ-44LTR 1408 0.0025 (5/1974) 0 * * Os_TE_342645 Chr4 4434672 4431687 - TRUNCATOR 2918 0.2513 (442/1759) -1 Intact Os_TE_342643 Os_TE_342643 Chr4 4431687 4434667 + TRUNCATOR 2918 0.3421 (676/1976) 1 Intact Os_TE_342645 Os_TE_342636 Chr4 4430415 4430414 + RETRO1_LTR 8314 0.0010 (3/2956) 0 * * Os_TE_342633 Chr4 4429884 4429885 + ORSiCMCM00100019 2717 0.0195 (58/2982) 0 * Os_TE_342632 Os_TE_342632 Chr4 4429880 4429879 - TRUNCATOR2_LTR 2904 0.0197 (59/2999) 0 * Os_TE_342633 Os_TE_342631 Chr4 4428977 4428976 - ORSiTETNOOT00107 906 0.0037 (11/2986) 0 * Os_TE_342630 Os_TE_342630 Chr4 4428973 4428974 + ORSiTETNOOT00107 906 0.0034 (10/2980) 0 * Os_TE_342631 Os_TE_342624 Chr4 4427983 4427984 + ORSgTEMT01601122 212 0.0222 (65/2927) 0 * * Os_TE_342623 Chr4 4427912 4427913 - RETRO1_LTR 8314 0.0175 (51/2912) 0 * Os_TE_342622 Os_TE_342622 Chr4 4427908 4427907 + RETRO2A_LTR 12895 0.0168 (49/2910) 0 * Os_TE_342623 Os_TE_342620 Chr4 4426811 4426810 + SC-4_LTR 5218 0.0007 (2/2921) 0 * * Os_TE_342617 Chr4 4426151 4426150 - HATOS1 3488 0.0177 (51/2881) 0 * * Os_TE_342616 Chr4 4425499 4425498 - STOWAWAY1_OS 149 0.0242 (68/2808) 0 * * Os_TE_342614 Chr4 4425423 4425424 - ORSgTEMT02400179 221 0.0004 (1/2844) 0 * Os_TE_342613 Os_TE_342613 Chr4 4425422 4425421 - TYPEM 227 0.0003 (1/2923) 0 * Os_TE_342614 Os_TE_342603 Chr4 4424245 4424244 - STOWAWAY44_OS 240 0.0003 (1/2942) 0 * * Os_TE_342590 Chr4 4421959 4421960 - STOWAWAY11_OS 292 0.0003 (1/2942) 0 * * Os_TE_342584 Chr4 4419355 4419354 + STOWAWAY44_OS 240 0.0012 (1/865) 0 * Os_TE_342583 Os_TE_342583 Chr4 4419352 4419353 - STOWAWAY44_OS 240 0.1350 (380/2814) 0 * Os_TE_342584 Os_TE_342581 Chr4 4417900 4417899 + STOWAWAY47_OS 148 0.0244 (71/2904) 0 * * Os_TE_342580 Chr4 4417736 4417737 + ORSiTERTOOT00296 5553 0.0010 (3/2979) 0 * Os_TE_342579 Os_TE_342579 Chr4 4417732 4417731 - SC-3_LTR 5748 0.0010 (3/2985) 0 * Os_TE_342580 Os_TE_342568 Chr4 4412193 4412194 + ORSiTERTOOT00296 5553 0.0003 (1/2970) 0 * Os_TE_342567 Os_TE_342567 Chr4 4412189 4412188 - SC-3_LTR 5748 0.0003 (1/2974) 0 * Os_TE_342568 Os_TE_342566 Chr4 4412030 4412031 - SC-3_LTR 5748 0.0030 (9/2970) 0 * Os_TE_342565 Os_TE_342565 Chr4 4412026 4412025 + ORSiTERTOOT00296 5553 0.0034 (10/2973) 0 * Os_TE_342566 Os_TE_342559 Chr4 4411418 4411419 + ORSgTEMT00500578 129 0.0003 (1/2950) 0 * Os_TE_342558 Os_TE_342558 Chr4 4411417 4411416 - ORSgTEMT00500578 129 0.0003 (1/2933) 0 * Os_TE_342559 Os_TE_342552 Chr4 4408556 4408557 + ORSiTERTOOT00296 5553 0.0003 (1/2979) 0 * Os_TE_342551 Os_TE_342551 Chr4 4408552 4408551 - SC-3_LTR 5748 0.0004 (1/2693) 0 * Os_TE_342552 Os_TE_342549 Chr4 4406616 4406617 - COWARD-3 221 0.0015 (3/2041) 0 * * Os_TE_342545 Chr4 4405425 4405426 + OSTE15 1168 0.0236 (70/2963) 0 * * Os_TE_342534 Chr4 4401282 4401283 - MUDROS2 6821 0.0014 (4/2782) 0 * Os_TE_342533 Os_TE_342533 Chr4 4401275 4401274 - MDM1 326 0.0011 (3/2779) 0 * Os_TE_342534 Os_TE_342531 Chr4 4401039 4400798 - ORSgTETNOOT02217 240 0.1413 (381/2697) 1 Intact * Os_TE_342525 Chr4 4400391 4400392 - ORSgTETNOOT00856 140 0.0004 (1/2740) 0 * * Os_TE_342524 Chr4 4399848 4399849 - ORSgTERT00201216 11284 0.0005 (1/1903) 0 * * Os_TE_342521 Chr4 4399221 4399222 - RIREX_LTR 8828 0.0032 (6/1881) 0 * * Os_TE_342514 Chr4 4398778 4398779 - ORSgTETNOOT00534 256 0.0241 (69/2859) 0 * Os_TE_342513 Os_TE_342513 Chr4 4398776 4398775 - INDITTO 263 0.0244 (70/2870) 0 * Os_TE_342514 Os_TE_342481 Chr4 4383662 4383663 - OSR3_LTR 5201 0.0011 (1/934) 0 * Os_TE_342480 Os_TE_342480 Chr4 4383658 4383657 + OSR3_LTR 5201 0.0011 (1/937) 0 * Os_TE_342481 Os_TE_342468 Chr4 4379333 4377330 - ORSiCMCM00100013 9728 0.5606 (1425/2542) 1 Intact Os_TE_342459 Os_TE_342459 Chr4 4377330 4379334 + ORSiCMCM00100013 9728 0.5668 (1442/2544) 1 Solo_LTR Os_TE_342468 Os_TE_342457 Chr4 4377007 4377008 - TRUNCATOR2_LTR 2904 0.0004 (1/2480) 0 * * Os_TE_342452 Chr4 4374457 4372182 - TNR3 1536 0.6725 (1314/1954) 1 Intact * Os_TE_342447 Chr4 4371854 4370847 - CACTA-N 987 0.6270 (1876/2992) 1 Intact * Os_TE_342443 Chr4 4370100 4370099 + ORSiCMCM00100014 10855 0.4072 (1169/2871) 0 * * Os_TE_342439 Chr4 4362294 4368744 - OSTONOR1_LTR 6440 0.1068 (307/2874) 1 Intact * Os_TE_342438 Chr4 4362136 4362137 + OSTE15 1168 0.0003 (1/2992) 0 * * Os_TE_342413 Chr4 4356757 4356758 + MUDROS1 4932 0.0007 (1/1497) 0 * * Os_TE_342407 Chr4 4353269 4353270 - ORSiTERTOOT00363 4650 0.0163 (49/2998) 0 * * Os_TE_342406 Chr4 4352827 4352828 + AMYLTP 383 0.0010 (3/2959) 0 * Os_TE_342405 Os_TE_342405 Chr4 4352819 4352818 - AMYLTP 383 0.0010 (3/2974) 0 * Os_TE_342406 Os_TE_342404 Chr4 4352802 4352803 - SZ-55_LTR 10318 0.0707 (211/2983) 0 * Os_TE_342403 Os_TE_342403 Chr4 4352798 4352797 + SZ-55_LTR 10318 0.0788 (236/2996) 0 * Os_TE_342404 Os_TE_342402 Chr4 4352124 4352125 + ORSiTERTOOT00333 4719 0.0011 (3/2730) 0 * Os_TE_342401 Os_TE_342401 Chr4 4352121 4352120 - ORSiTERTOOT00333 4719 0.0011 (3/2756) 0 * Os_TE_342402 Os_TE_342400 Chr4 4352036 4352037 + COPIA2-LTR_OS 6433 0.0184 (43/2339) 0 * * Os_TE_342398 Chr4 4351948 4351949 + STOWAWAY13_OS 251 0.1718 (460/2677) 0 * Os_TE_342397 Os_TE_342397 Chr4 4351947 4351946 + STOWAWAY13_OS 251 0.1577 (448/2841) 0 * Os_TE_342398 Os_TE_342395 Chr4 4349903 4349904 + RIRE5-LTR_OS 6427 0.0115 (34/2961) 0 * * Os_TE_342392 Chr4 4349508 4349509 - RIRE2_LTR 11306 0.0078 (22/2805) 0 * * Os_TE_342390 Chr4 4348988 4348989 + MERMITEB 1610 0.2555 (441/1726) 0 * Os_TE_342389 Os_TE_342389 Chr4 4348982 4348981 + MERMITE18B 1306 0.2551 (447/1752) 0 * Os_TE_342390 Os_TE_342386 Chr4 4347046 4347047 + MERMITEB 1610 0.0047 (8/1693) 0 * * Os_TE_342385 Chr4 4346952 4345153 + MERMITED 1572 0.6036 (1043/1728) 1 Intact Os_TE_342383 Os_TE_342383 Chr4 4345151 4346950 + MERMITED 1572 0.6098 (1066/1748) 1 Intact Os_TE_342385 Os_TE_342382 Chr4 4344624 4344625 + TWIFB1 3737 0.1244 (192/1543) 0 * * Os_TE_342379 Chr4 4343437 4343789 + TYPEU3 380 0.8825 (1480/1677) 1 Intact * Os_TE_342378 Chr4 4343363 4343364 - SZ-67LTR 1540 0.0158 (28/1768) 0 * Os_TE_342377 Os_TE_342377 Chr4 4343359 4343358 + SZ-67LTR 1540 0.0122 (21/1720) 0 * Os_TE_342378 Os_TE_342375 Chr4 4342851 4342852 + SZ-44LTR 1408 0.0017 (3/1762) 0 * Os_TE_342374 Os_TE_342374 Chr4 4342847 4342846 - SZ-29LTR 1393 0.0017 (3/1759) 0 * Os_TE_342375 Os_TE_342357 Chr4 4329598 4342065 - ENSPM4_OS 11610 0.5962 (1032/1731) 1 Intact * Os_TE_342356 Chr4 4329448 4329449 - ORSgTEMT00900467 235 0.0018 (3/1687) 0 * * Os_TE_342347 Chr4 4328393 4328394 - ORSgTEMT00900760 239 0.0078 (18/2309) 0 * * Os_TE_342342 Chr4 4327448 4327447 - ORSgTETN00200001 10994 0.0030 (8/2625) 0 * * Os_TE_342340 Chr4 4326608 4326609 - CACTA-H 1152 0.0091 (25/2753) 0 * * Os_TE_342339 Chr4 4326600 4326601 - GYPSIA_LTR 20595 0.0011 (3/2754) 0 * Os_TE_342338 Os_TE_342338 Chr4 4326596 4326595 + GYPSIA_LTR 20595 0.0011 (3/2739) 0 * Os_TE_342339 Os_TE_342336 Chr4 4325554 4325555 + SPMLIKE 10989 0.0086 (25/2909) 0 * Os_TE_342335 Os_TE_342335 Chr4 4325552 4325551 - ORSgTETN00200001 10994 0.0086 (25/2907) 0 * Os_TE_342336 Os_TE_342334 Chr4 4325442 4325443 - RIRE3_LTR 12054 0.2440 (717/2938) 0 * Os_TE_342333 Os_TE_342333 Chr4 4325438 4325437 + RIRE3_LTR 12054 0.2305 (669/2903) 0 * Os_TE_342334 Os_TE_342332 Chr4 4325173 4325174 - RIRE2_LTR 11306 0.0085 (25/2950) 0 * Os_TE_342331 Os_TE_342331 Chr4 4325169 4325168 - ORSgTERT00201216 11284 0.0085 (25/2951) 0 * Os_TE_342332 Os_TE_342329 Chr4 4325003 4325002 - BAJIELTR 4500 0.0031 (9/2944) 0 * * Os_TE_342328 Chr4 4324984 4324985 - COPI1_LTR 4721 0.0885 (217/2453) 0 * Os_TE_342327 Os_TE_342327 Chr4 4324980 4324979 + COPI1_LTR 4721 0.0725 (213/2938) 0 * Os_TE_342328 Os_TE_342325 Chr4 4324245 4324246 - TRUNCATOR2_LTR 2904 0.0007 (2/2920) 0 * Os_TE_342324 Os_TE_342324 Chr4 4324241 4324240 + TRUNCATOR2_LTR 2904 0.0007 (2/2954) 0 * Os_TE_342325 Os_TE_342322 Chr4 4324065 4324066 - SC-6_LTR 6317 0.0020 (6/2972) 0 * * Os_TE_342317 Chr4 4321401 4321400 + ORSgTEMT01600403 239 0.0003 (1/2985) 0 * * Os_TE_342313 Chr4 4320180 4320181 + RIREX_LTR 8828 0.0012 (3/2545) 0 * Os_TE_342312 Os_TE_342312 Chr4 4320176 4320175 - RIREX_LTR 8828 0.0010 (3/2996) 0 * Os_TE_342313 Os_TE_342311 Chr4 4320172 4320173 - MuDR4_OS 7610 0.1652 (493/2985) 0 * Os_TE_342310 Os_TE_342310 Chr4 4320166 4320165 - MuDR4_OS 7610 0.1699 (508/2990) 0 * Os_TE_342311 Os_TE_342308 Chr4 4319775 4319776 - SC-10_LTR 4920 0.0123 (36/2927) 0 * * Os_TE_342305 Chr4 4319275 4319274 - RETROFIT7_LTR 4788 0.0761 (222/2917) 0 * * Os_TE_342304 Chr4 4319088 4319087 + CPSC4A_LTR 5182 0.0003 (1/2948) 0 * * Os_TE_342301 Chr4 4318403 4318402 + EnSpm-13_OS 11171 0.0004 (1/2423) 0 * * Os_TE_342298 Chr4 4316981 4316982 - ORSgTEMT00900099 250 0.4573 (1348/2948) 0 * * Os_TE_342292 Chr4 4315790 4315791 + SC-10_LTR 4920 0.0139 (24/1728) 0 * * Os_TE_342290 Chr4 4314361 4314360 + STOWAWAY9_OS 235 0.0247 (72/2916) 0 * * Os_TE_342288 Chr4 4314045 4314271 - ORSgTEMT01602413 239 0.5314 (1533/2885) 1 Intact * Os_TE_342286 Chr4 4313399 4313400 - ORSgTETN00200001 10994 0.0134 (21/1568) 0 * Os_TE_342285 Os_TE_342285 Chr4 4313397 4313396 + SPMLIKE 10989 0.0098 (28/2848) 0 * Os_TE_342286 Os_TE_342278 Chr4 4311647 4311648 - TYPEU4 402 0.0067 (19/2855) 0 * * Os_TE_342271 Chr4 4310823 4310824 + RIRE2_LTR 11306 0.0032 (6/1875) 0 * * Os_TE_342267 Chr4 4309293 4309292 - ORSgTETN00200001 10994 0.0061 (17/2798) 0 * * Os_TE_342256 Chr4 4306069 4306068 + ORSgTEMT00501786 149 0.1084 (302/2786) 0 * * Os_TE_342255 Chr4 4305494 4305493 + TRUNCATOR 2918 0.0283 (60/2120) 0 * * Os_TE_342248 Chr4 4304758 4304759 - TYPEM 227 0.0017 (5/2964) 0 * * Os_TE_342245 Chr4 4304117 4304116 - ORSgTEMT00900099 250 0.0017 (5/2966) 0 * * Os_TE_342240 Chr4 4302034 4302033 - ORSgTEMT02400179 221 0.0064 (19/2982) 0 * * Os_TE_342232 Chr4 4298977 4298978 - COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * * Os_TE_342231 Chr4 4298771 4298772 - AMYLTP 383 0.0007 (2/2997) 0 * Os_TE_342230 Os_TE_342230 Chr4 4298763 4298762 + AMYLTP 383 0.0003 (1/2985) 0 * Os_TE_342231 Os_TE_342229 Chr4 4298710 4298711 + NDNA1TNA_OS 334 0.0007 (2/2997) 0 * Os_TE_342228 Os_TE_342228 Chr4 4298708 4298707 - NDNA1TNA_OS 334 0.0007 (2/2999) 0 * Os_TE_342229 Os_TE_342227 Chr4 4297944 4297945 + MPING 430 0.0003 (1/2996) 0 * * Os_TE_342195 Chr4 4276729 4276730 - SC-3_LTR 5748 0.0020 (6/2993) 0 * Os_TE_342194 Os_TE_342194 Chr4 4276725 4276724 + ORSiTERTOOT00296 5553 0.0020 (6/2993) 0 * Os_TE_342195 Os_TE_342137 Chr4 4265576 4265575 + TRUNCATOR 2918 0.0623 (180/2890) 0 * Os_TE_342136 Os_TE_342136 Chr4 4265575 4265576 - TRUNCATOR 2918 0.0519 (140/2698) 0 * Os_TE_342137 Os_TE_342135 Chr4 4263565 4262608 - COPIA2-LTR_OS 6433 0.0879 (256/2911) 1 Solo_LTR Os_TE_342134 Os_TE_342134 Chr4 4262608 4263565 + COPIA2-LTR_OS 6433 0.0866 (252/2911) 1 Solo_LTR Os_TE_342135 Os_TE_342131 Chr4 4262079 4262080 - SC-4_LTR 5218 0.0581 (169/2907) 0 * * Os_TE_342088 Chr4 4244130 4244131 + RIRE3_LTR 12054 0.0010 (3/2899) 0 * * Os_TE_342061 Chr4 4232878 4232877 - RETROSAT3_LTR 11537 0.0197 (56/2836) 0 * * Os_TE_342050 Chr4 4230537 4230538 - RIREX_LTR 8828 0.0018 (5/2829) 0 * Os_TE_342049 Os_TE_342049 Chr4 4230536 4230535 + RIREX_LTR 8828 0.0014 (4/2838) 0 * Os_TE_342050 Os_TE_342019 Chr4 4221380 4221379 + SZ-62LTR 3649 0.0117 (34/2900) 0 * * Os_TE_342017 Chr4 4219354 4219353 + TRUNCATOR2_LTR 2904 0.0041 (11/2676) 0 * * Os_TE_342007 Chr4 4216030 4216031 + RIREX_LTR 8828 0.0617 (179/2900) 0 * * Os_TE_342002 Chr4 4214234 4214233 + ENSPM6_OS 9815 0.2176 (624/2868) 0 * Os_TE_342001 Os_TE_342001 Chr4 4214233 4214234 - ENSPM6_OS 9815 0.2199 (629/2860) 0 * Os_TE_342002 Os_TE_342000 Chr4 4214126 4214127 - OSLINE1-2 7128 0.0017 (5/2880) 0 * * Os_TE_341999 Chr4 4213852 4213853 - RIRE3_LTR 12054 0.0810 (234/2890) 0 * Os_TE_341998 Os_TE_341998 Chr4 4213848 4213847 + RIRE3_LTR 12054 0.0798 (230/2884) 0 * Os_TE_341999 Os_TE_341987 Chr4 4210932 4210931 + STOWAWAY51_OS 246 0.2306 (659/2858) 0 * Os_TE_341986 Os_TE_341986 Chr4 4210926 4210927 - STOWAWAY51_OS 246 0.2352 (674/2866) 0 * Os_TE_341987 Os_TE_341968 Chr4 4206107 4206108 + RETRO2_LTR 12874 0.0042 (12/2858) 0 * * Os_TE_341950 Chr4 4201491 4201492 + EnSpm-11_OS 13126 0.0570 (166/2911) 0 * Os_TE_341949 Os_TE_341949 Chr4 4201487 4201486 - EnSpm-11_OS 13126 0.0580 (169/2912) 0 * Os_TE_341950 Os_TE_341948 Chr4 4201330 4201331 + ORSiTERTOOT00226 792 0.0007 (2/2894) 0 * Os_TE_341947 Os_TE_341947 Chr4 4201326 4201325 - SZ-22_LTR 4403 0.0007 (2/2894) 0 * Os_TE_341948 Os_TE_341945 Chr4 4201033 4201032 + TRUNCATOR 2918 0.0280 (81/2893) 0 * Os_TE_341944 Os_TE_341944 Chr4 4201032 4201033 - TRUNCATOR 2918 0.0263 (76/2891) 0 * Os_TE_341945 Os_TE_341930 Chr4 4195138 4195137 + RETROSAT3_LTR 11537 0.0031 (9/2896) 0 * * Os_TE_341919 Chr4 4193154 4193155 - RIREX_LTR 8828 0.0010 (3/2865) 0 * Os_TE_341918 Os_TE_341918 Chr4 4193150 4193149 + RIREX_LTR 8828 0.0014 (4/2864) 0 * Os_TE_341919 Os_TE_341909 Chr4 4190625 4190626 - SC-4_LTR 5218 0.0003 (1/2902) 0 * Os_TE_341908 Os_TE_341908 Chr4 4190621 4190620 + SC-4_LTR 5218 0.0003 (1/2903) 0 * Os_TE_341909 Os_TE_341905 Chr4 4189642 4189643 + ORSgTETNOOT00908 242 0.3168 (879/2775) 0 * Os_TE_341904 Os_TE_341904 Chr4 4189634 4189633 + ORSgTETNOOT01219 231 0.0015 (3/1988) 0 * Os_TE_341905 Os_TE_341899 Chr4 4189190 4189189 - SZ-56A_LTR 5689 0.0167 (48/2869) 0 * * Os_TE_341853 Chr4 4170840 4170841 + COPIA2-LTR_OS 6433 0.0003 (1/2895) 0 * Os_TE_341852 Os_TE_341852 Chr4 4170836 4170835 - COPIA2-LTR_OS 6433 0.0003 (1/2909) 0 * Os_TE_341853 Os_TE_341851 Chr4 4170797 4170796 - TRUNCATOR2_LTR 2904 0.0028 (8/2894) 0 * * Os_TE_341845 Chr4 4166574 4166573 + RIREX_LTR 8828 0.0003 (1/2898) 0 * * Os_TE_341844 Chr4 4166154 4166155 - ORSgTERT00201216 11284 0.0076 (22/2897) 0 * Os_TE_341843 Os_TE_341843 Chr4 4166150 4166149 - RIRE2_LTR 11306 0.0076 (22/2899) 0 * Os_TE_341844 Os_TE_341833 Chr4 4164770 4164771 + TRUNCATOR 2918 0.0282 (83/2948) 0 * * Os_TE_341831 Chr4 4164520 4164519 - RIRE3A_LTR 10580 0.0024 (7/2894) 0 * * Os_TE_341829 Chr4 4163957 4163956 - TRUNCATOR2_LTR 2904 0.0017 (5/2888) 0 * * Os_TE_341823 Chr4 4161098 4158147 + RETROSAT2LTRA 3112 0.2050 (591/2883) 1 Intact Os_TE_341819 Os_TE_341819 Chr4 4158147 4161098 - RETROSAT2LTRA 3112 0.2069 (597/2886) 1 Intact Os_TE_341823 Os_TE_341816 Chr4 4157030 4157031 - RIREX_LTR 8828 0.0290 (84/2898) 0 * * Os_TE_341796 Chr4 4151547 4151548 + TRUNCATOR 2918 0.2067 (598/2893) 0 * * Os_TE_341793 Chr4 4150677 4150678 + RIRE3_LTR 12054 0.0055 (16/2895) 0 * * Os_TE_341791 Chr4 4150036 4150037 + SZ-62LTR 3649 0.0870 (252/2897) 0 * * Os_TE_341789 Chr4 4149437 4149438 - TRUNCATOR2_LTR 2904 0.0076 (22/2890) 0 * Os_TE_341788 Os_TE_341788 Chr4 4149433 4149432 + ORSiCMCM00100019 2717 0.0076 (22/2890) 0 * Os_TE_341789 Os_TE_341785 Chr4 4148384 4148385 + RIRE3_LTR 12054 0.0014 (4/2886) 0 * Os_TE_341784 Os_TE_341784 Chr4 4148380 4148379 - RIRE3_LTR 12054 0.0017 (5/2889) 0 * Os_TE_341785 Os_TE_341741 Chr4 4133340 4133339 - RIRE2_LTR 11306 0.0088 (13/1479) 0 * * Os_TE_341738 Chr4 4131402 4131403 + RIREX_LTR 8828 0.0004 (1/2526) 0 * * Os_TE_341736 Chr4 4130962 4128031 + ORSiCMCM00100019 2717 0.1461 (201/1376) 1 Intact * Os_TE_341729 Chr4 4125529 4125530 + TRUNCATOR 2918 0.1892 (267/1411) 0 * * Os_TE_341656 Chr4 4107243 4107242 + TRUNCATOR2_LTR 2904 0.0402 (84/2092) 0 * * Os_TE_341539 Chr4 4057096 4057097 - RIRE3_LTR 12054 0.0005 (1/2131) 0 * Os_TE_341538 Os_TE_341538 Chr4 4057092 4057091 + RIRE3_LTR 12054 0.0005 (1/2131) 0 * Os_TE_341539 Os_TE_341537 Chr4 4057031 4057030 + TRUNCATOR 2918 0.0278 (59/2119) 0 * Os_TE_341536 Os_TE_341536 Chr4 4057030 4057031 - TRUNCATOR 2918 0.0272 (57/2099) 0 * Os_TE_341537 Os_TE_341535 Chr4 4056989 4056990 + ORSiTERTOOT00027 10853 0.0358 (76/2123) 0 * Os_TE_341534 Os_TE_341534 Chr4 4056985 4056984 - RIRE3A_LTR 10580 0.0361 (76/2103) 0 * Os_TE_341535 Os_TE_341528 Chr4 4053237 4053238 - RIREX_LTR 8828 0.0024 (5/2091) 0 * Os_TE_341527 Os_TE_341527 Chr4 4053233 4053232 + RIREX_LTR 8828 0.0024 (5/2101) 0 * Os_TE_341528 Os_TE_341505 Chr4 4047362 4047361 - RIRE3A_LTR 10580 0.0418 (82/1962) 0 * * Os_TE_341498 Chr4 4045257 4045256 - TRUNCATOR 2918 0.3164 (668/2111) 0 * Os_TE_341497 Os_TE_341497 Chr4 4045256 4045257 + TRUNCATOR 2918 0.3109 (651/2094) 0 * Os_TE_341498 Os_TE_341493 Chr4 4043643 4043644 - ORSgTETN00200001 10994 0.0005 (1/2089) -1 * Os_TE_341492 Os_TE_341492 Chr4 4043641 4043640 + SPMLIKE 10989 0.0010 (2/2092) 0 * Os_TE_341493 Os_TE_341490 Chr4 4043179 4043180 + RIRE2_LTR 11306 0.0278 (59/2124) 0 * Os_TE_341489 Os_TE_341489 Chr4 4043175 4043174 - RIRE2_LTR 11306 0.0274 (58/2114) 0 * Os_TE_341490 Os_TE_341488 Chr4 4043052 4043053 + COPI2_LTR 4733 0.0005 (1/2131) 0 * Os_TE_341487 Os_TE_341487 Chr4 4043048 4043047 - COPI2_LTR 4733 0.0005 (1/2131) 0 * Os_TE_341488 Os_TE_341483 Chr4 4041989 4041988 - TRUNCATOR 2918 0.0276 (57/2063) 0 * Os_TE_341482 Os_TE_341482 Chr4 4041988 4041989 + TRUNCATOR 2918 0.0277 (59/2130) 0 * Os_TE_341483 Os_TE_341450 Chr4 4029216 4029215 - SZ-62LTR 3649 0.0062 (13/2112) 0 * * Os_TE_341448 Chr4 4028705 4028706 + SC-4_LTR 5218 0.0009 (2/2107) 0 * * Os_TE_341327 Chr4 3964036 3964037 + RIRE3A_LTR 10580 0.0005 (1/2101) 0 * Os_TE_341326 Os_TE_341326 Chr4 3964032 3964031 - RIRE3A_LTR 10580 0.0005 (1/2121) 0 * Os_TE_341327 Os_TE_341319 Chr4 3959430 3959431 + RIREX_LTR 8828 0.0085 (20/2364) 0 * * Os_TE_341305 Chr4 3956860 3956859 - RIRE3A_LTR 10580 0.2273 (653/2873) 0 * * Os_TE_341240 Chr4 3946322 3946323 - RIRE3A_LTR 10580 0.0135 (26/1921) 0 * * Os_TE_341232 Chr4 3945814 3945815 + RIRE3A_LTR 10580 0.0194 (20/1032) 0 * * Os_TE_341219 Chr4 3943561 3940352 - TRUNCATOR2_LTR 2904 0.2690 (629/2338) 1 Intact * Os_TE_341095 Chr4 3881734 3881733 - RIRE3_LTR 12054 0.0289 (84/2910) 0 * * Os_TE_341094 Chr4 3881716 3881717 - RIRE2_LTR 11306 0.0003 (1/2977) 0 * * Os_TE_341081 Chr4 3869897 3881197 - RIRE2_LTR 11306 0.0856 (248/2898) 1 Intact * Os_TE_341078 Chr4 3869436 3869435 + ORSiCMCM00100019 2717 0.0128 (37/2901) 0 * * Os_TE_341072 Chr4 3866446 3865458 + OSMU5 4881 0.3579 (952/2660) 1 Intact * Os_TE_340946 Chr4 3828434 3828433 - TRUNCATOR2_LTR 2904 0.0004 (1/2626) 0 * * Os_TE_340926 Chr4 3819104 3819103 - NDNA1TNA_OS 334 0.0004 (1/2254) 0 * * Os_TE_340897 Chr4 3794890 3794891 - ATLANTYS-LTR_OS 13740 0.1183 (294/2486) 0 * * Os_TE_340890 Chr4 3791849 3791848 + RIRE2_LTR 11306 0.0004 (1/2795) 0 * * Os_TE_340883 Chr4 3787852 3787853 - SZ-62LTR 3649 0.1811 (488/2695) 0 * * Os_TE_340880 Chr4 3787009 3787008 + TYPEU4 402 0.0004 (1/2282) 0 * Os_TE_340879 Os_TE_340879 Chr4 3787008 3787009 - TYPEU1 380 0.0004 (1/2276) 0 * Os_TE_340880 Os_TE_340875 Chr4 3785306 3785307 - RIREX_LTR 8828 0.0077 (21/2719) 0 * Os_TE_340874 Os_TE_340874 Chr4 3785302 3785301 + RIREX_LTR 8828 0.0074 (20/2721) 0 * Os_TE_340875 Os_TE_340872 Chr4 3784971 3784972 + ORSiCMCM00100019 2717 0.6543 (1747/2670) 0 * * Os_TE_340767 Chr4 3712592 3712593 + SZ-19LTR 1513 0.0339 (73/2154) 0 * * Os_TE_340754 Chr4 3707917 3707916 + RETRO2A_LTR 12895 0.0021 (6/2912) 0 * * Os_TE_340750 Chr4 3706484 3706485 + COPIA1-LTR_OS 9292 0.0072 (13/1815) 0 * * Os_TE_340746 Chr4 3705604 3705342 + INDITTO 263 0.0786 (227/2888) 1 Intact Os_TE_340742 Os_TE_340742 Chr4 3705342 3705604 - INDITTO 263 0.0781 (225/2880) 1 Intact Os_TE_340746 Os_TE_340721 Chr4 3700566 3688497 + RIRE3_LTR 12054 0.0575 (167/2906) 1 Intact * Os_TE_340703 Chr4 3683854 3683853 + TRUNCATOR 2918 0.0096 (28/2927) 0 * Os_TE_340702 Os_TE_340702 Chr4 3683853 3683854 - TRUNCATOR 2918 0.0096 (28/2927) 0 * Os_TE_340703 Os_TE_340700 Chr4 3681942 3681943 + RIREX_LTR 8828 0.0007 (2/2965) 0 * Os_TE_340699 Os_TE_340699 Chr4 3681938 3681937 - RIREX_LTR 8828 0.0007 (2/2930) 0 * Os_TE_340700 Os_TE_340698 Chr4 3681824 3681825 - ORSgTETN00200001 10994 0.0003 (1/2959) 0 * * Os_TE_340695 Chr4 3680829 3680830 - TRUNCATOR 2918 0.0147 (43/2920) 0 * * Os_TE_340642 Chr4 3661473 3661472 - ORSgTEMT03000007 372 0.1006 (261/2595) 0 * * Os_TE_340631 Chr4 3659709 3659710 - ORSgTEMT00900892 250 0.0012 (3/2548) 0 * * Os_TE_340623 Chr4 3658304 3658303 - ORSiTEMT01000008 242 0.1590 (417/2623) 0 * * Os_TE_340619 Chr4 3657420 3657421 + NDNA1TNA_OS 334 0.0245 (65/2654) 0 * * Os_TE_340616 Chr4 3657032 3657033 - OSTE33 1012 0.0897 (240/2675) 0 * * Os_TE_340610 Chr4 3655755 3655754 + SPMLIKE 10989 0.0651 (173/2656) 0 * * Os_TE_340609 Chr4 3655333 3655334 + SPMLIKE 10989 0.0099 (25/2533) 0 * Os_TE_340608 Os_TE_340608 Chr4 3655331 3655330 - ORSgTETN00200001 10994 0.0099 (25/2533) 0 * Os_TE_340609 Os_TE_340606 Chr4 3655208 3655207 + CACTA-B 1103 0.0226 (57/2523) 0 * Os_TE_340605 Os_TE_340605 Chr4 3655204 3655205 + ORSgTETN00200005 1121 0.0219 (55/2515) 0 * Os_TE_340606 Os_TE_340604 Chr4 3655111 3655112 - ORSgTETN00200001 10994 0.0599 (160/2671) 0 * * Os_TE_340583 Chr4 3651116 3651115 + OSTE33 1012 0.0010 (2/1978) 0 * Os_TE_340582 Os_TE_340582 Chr4 3651115 3651116 + QINNIU 528 0.1264 (292/2311) 0 * Os_TE_340583 Os_TE_340577 Chr4 3650097 3650098 - ORSgTERT00201216 11284 0.0763 (178/2334) 0 * * Os_TE_340575 Chr4 3649653 3649652 - ORSgTEMT02000041 194 0.0246 (58/2362) 0 * * Os_TE_340573 Chr4 3649109 3649108 + RETROSAT4_LTR 13504 0.0181 (43/2375) 0 * * Os_TE_340569 Chr4 3648098 3648097 + ORSgTEMT01400040 213 0.0004 (1/2385) 0 * Os_TE_340568 Os_TE_340568 Chr4 3648095 3648096 - ORSgTEMT01400014 209 0.0004 (1/2386) 0 * Os_TE_340569 Os_TE_340565 Chr4 3647188 3647189 + ORSgTETNOOT01930 140 0.4968 (1163/2341) 0 * Os_TE_340564 Os_TE_340564 Chr4 3647186 3647185 - ORSgTETNOOT01930 140 0.4968 (1166/2347) 0 * Os_TE_340565 Os_TE_340563 Chr4 3647140 3647141 + ENSPM_OS 9843 0.0004 (1/2377) 0 * * Os_TE_340562 Chr4 3646890 3646891 - CACTA-M 1129 0.0050 (12/2387) 0 * * Os_TE_340561 Chr4 3646855 3646856 - ORSgTETN00200001 10994 0.0096 (23/2388) 0 * Os_TE_340560 Os_TE_340560 Chr4 3646853 3646852 + SPMLIKE 10989 0.0092 (22/2383) 0 * Os_TE_340561 Os_TE_340558 Chr4 3646392 3646391 + RIREX_LTR 8828 0.0442 (58/1311) 0 * * Os_TE_340552 Chr4 3640751 3644593 + RETROSAT4_LTR 13504 0.3092 (479/1549) 1 Solo_LTR * Os_TE_340540 Chr4 3636637 3636638 + RIREX_LTR 8828 0.0599 (155/2588) 0 * Os_TE_340539 Os_TE_340539 Chr4 3636633 3636632 - RIREX_LTR 8828 0.0547 (154/2814) 0 * Os_TE_340540 Os_TE_340538 Chr4 3636243 3636244 + TRUNCATOR2_LTR 2904 0.0004 (1/2594) 0 * * Os_TE_340529 Chr4 3634574 3634573 - GYPSY1-LTR_OS 8900 0.0007 (2/2900) 0 * * Os_TE_340528 Chr4 3634479 3634478 - TRUNCATOR 2918 0.0223 (65/2919) 0 * * Os_TE_340515 Chr4 3631513 3631512 - OsSN3 183 0.3370 (979/2905) 0 * * Os_TE_340512 Chr4 3630921 3630922 - TYPEM 227 0.0043 (7/1634) 0 * Os_TE_340511 Os_TE_340511 Chr4 3630920 3630919 - ORSgTEMT02400179 221 0.0054 (7/1295) 0 * Os_TE_340512 Os_TE_340509 Chr4 3630498 3630343 - STOWAWAY1_OS 149 0.2111 (621/2942) 1 Intact Os_TE_340508 Os_TE_340508 Chr4 3630341 3630488 + ORSgTEMT01701591 154 0.3314 (507/1530) 1 Intact Os_TE_340509 Os_TE_340472 Chr4 3608138 3608139 - SZ-22_LTR 4403 0.0007 (1/1498) 0 * * Os_TE_340464 Chr4 3606037 3606442 + ORSgTEMT00300069 394 0.8919 (1295/1452) 1 Intact * Os_TE_340445 Chr4 3594861 3594862 - TRUNCATOR2_LTR 2904 0.4974 (674/1355) 0 * * Os_TE_340427 Chr4 3586868 3586869 - RIREX_LTR 8828 0.0083 (20/2410) 0 * Os_TE_340426 Os_TE_340426 Chr4 3586864 3586863 + RIREX_LTR 8828 0.0087 (21/2411) 0 * Os_TE_340427 Os_TE_340421 Chr4 3584171 3584172 - ORSgTEMT00100406 349 0.0012 (3/2604) 0 * * Os_TE_340418 Chr4 3583477 3583478 - RIRE2_LTR 11306 0.0073 (20/2756) 0 * * Os_TE_340415 Chr4 3583038 3583037 - ORSiTERTOOT00269 10834 0.0520 (136/2615) 0 * * Os_TE_340414 Chr4 3583029 3583030 - MuDR3_OS 8604 0.7550 (1830/2424) 0 * Os_TE_340413 Os_TE_340413 Chr4 3583023 3583022 + MuDR3_OS 8604 0.7871 (1948/2475) 0 * Os_TE_340414 Os_TE_340409 Chr4 3581719 3581720 + MERMITEA 1710 0.1670 (467/2796) 0 * * Os_TE_340407 Chr4 3581417 3581418 - ORSgTEMT01600675 238 0.0039 (8/2061) 0 * * Os_TE_340403 Chr4 3580617 3580618 + ORSgTEMT02000038 194 0.0081 (24/2978) 0 * * Os_TE_340395 Chr4 3575186 3575185 - ENSPM5_OS 9581 0.0003 (1/2956) 0 * * Os_TE_340391 Chr4 3574432 3574431 + CASGRANDA 465 0.0309 (90/2916) 0 * * Os_TE_340389 Chr4 3573752 3573751 + RIREX_LTR 8828 0.0111 (33/2975) 0 * * Os_TE_340388 Chr4 3573678 3573679 + SPMLIKE 10989 0.0024 (7/2961) 0 * Os_TE_340387 Os_TE_340387 Chr4 3573676 3573675 - ORSgTETN00200001 10994 0.0024 (7/2977) 0 * Os_TE_340388 Os_TE_340380 Chr4 3573169 3573168 + SINE9_OS 293 0.0011 (3/2757) 0 * * Os_TE_340368 Chr4 3572054 3572053 - RIREX_LTR 8828 0.0003 (1/2977) 0 * * Os_TE_340367 Chr4 3571795 3571794 - TNR2A 152 0.0077 (23/2977) 0 * * Os_TE_340366 Chr4 3571771 3571772 - RIREX_LTR 8828 0.0003 (1/2939) 0 * Os_TE_340365 Os_TE_340365 Chr4 3571767 3571766 + RIREX_LTR 8828 0.0003 (1/2959) 0 * Os_TE_340366 Os_TE_340364 Chr4 3571489 3571488 - NDNA1TNA_OS 334 0.0007 (2/2967) 0 * * Os_TE_340360 Chr4 3569889 3569888 + RIRE3A_LTR 10580 0.0110 (30/2735) -1 * * Os_TE_340352 Chr4 3569230 3569229 + NDNA1TNA_OS 334 0.0095 (28/2946) 0 * * Os_TE_340348 Chr4 3568941 3568940 + STOWAWAY21_OS 243 0.0013 (4/2968) 0 * Os_TE_340347 Os_TE_340347 Chr4 3568940 3568941 + ORSgTEMT01601122 212 0.0013 (4/2979) 0 * Os_TE_340348 Os_TE_340344 Chr4 3568507 3568506 - SZ-52_LTR 13107 0.0090 (27/2988) 0 * * Os_TE_340320 Chr4 3562912 3562911 + STOWAWAY51_OS 246 0.0010 (3/2978) 0 * * Os_TE_340314 Chr4 3558166 3558167 + INDITTO 263 0.0003 (1/2982) 0 * * Os_TE_340312 Chr4 3555077 3555076 - ORSgTETNOOT00908 242 0.0266 (79/2970) 0 * * Os_TE_340310 Chr4 3554824 3554825 + AMYLTP 383 0.0219 (61/2788) 0 * * Os_TE_340303 Chr4 3554001 3554000 - SEVERIN-2 1952 0.0027 (5/1863) 0 * * Os_TE_340297 Chr4 3552429 3552430 - SZ-9LTR 965 0.3994 (1183/2962) 0 * * Os_TE_340293 Chr4 3550207 3550206 + ORSgTEMT01700791 134 0.0011 (2/1829) 0 * * Os_TE_340272 Chr4 3544668 3544669 + OSTONOR1_LTR 6440 0.0229 (64/2799) 0 * Os_TE_340271 Os_TE_340271 Chr4 3544664 3544663 - ORSiTERT00100062 5674 0.0198 (59/2976) 0 * Os_TE_340272 Os_TE_340261 Chr4 3541274 3541275 + RETROSAT2LTRA 3112 0.0009 (2/2133) 0 * Os_TE_340260 Os_TE_340260 Chr4 3541270 3541269 - RETROSAT3_LTR 11537 0.0009 (2/2128) 0 * Os_TE_340261 Os_TE_340259 Chr4 3540251 3540252 + ORSiTERTOOT00296 5553 0.0005 (1/2146) 0 * Os_TE_340258 Os_TE_340258 Chr4 3540247 3540246 - SC-3_LTR 5748 0.0005 (1/2164) 0 * Os_TE_340259 Os_TE_340255 Chr4 3539189 3539188 - TRUNCATOR 2918 0.0310 (86/2770) 0 * Os_TE_340254 Os_TE_340254 Chr4 3539188 3539189 + TRUNCATOR 2918 0.0388 (112/2890) 0 * Os_TE_340255 Os_TE_340249 Chr4 3538746 3538601 - ORSgTEMT00500716 149 0.7196 (1796/2496) 1 Intact Os_TE_340245 Os_TE_340245 Chr4 3538600 3538737 - ORSgTEMT00500995 149 0.6218 (1772/2850) 1 Intact Os_TE_340249 Os_TE_340241 Chr4 3538146 3538145 + ORSgTETNOOT00032 218 0.0056 (16/2881) 0 * * Os_TE_340239 Chr4 3538059 3538058 + CRM-LTR_OS 7749 0.0011 (2/1770) 0 * * Os_TE_340236 Chr4 3537679 3537678 - CACTA-I 1124 0.0305 (49/1609) 0 * Os_TE_340235 Os_TE_340235 Chr4 3537678 3537679 + CACTA-B 1103 0.0662 (111/1676) 0 * Os_TE_340236 Os_TE_340209 Chr4 3532320 3532321 + COPIA2-LTR_OS 6433 0.0010 (2/1911) 0 * * Os_TE_340103 Chr4 3475733 3475734 - CPSC2_LTR 5202 0.0257 (40/1559) 0 * Os_TE_340102 Os_TE_340102 Chr4 3475729 3475728 + CPSC2_LTR 5202 0.0281 (44/1566) 0 * Os_TE_340103 Os_TE_340091 Chr4 3472268 3472267 - RIREX_LTR 8828 0.0012 (3/2517) 0 * * Os_TE_340081 Chr4 3465235 3465234 - RIRE2_LTR 11306 0.0493 (66/1338) 0 * * Os_TE_340029 Chr4 3435284 3435285 + TRUNCATOR 2918 0.0099 (10/1009) 0 * * Os_TE_340024 Chr4 3433578 3433577 - TRUNCATOR 2918 0.0077 (8/1035) 0 * Os_TE_340023 Os_TE_340023 Chr4 3433577 3433578 + TRUNCATOR 2918 0.2218 (287/1294) 0 * Os_TE_340024 Os_TE_340020 Chr4 3433076 3433077 + ORSiCMCM00100019 2717 0.7222 (936/1296) 0 * Os_TE_340019 Os_TE_340019 Chr4 3433072 3433071 - TRUNCATOR2_LTR 2904 0.7175 (904/1260) 0 * Os_TE_340020 Os_TE_340017 Chr4 3433026 3433027 + RETROSAT2LTR 12796 0.0842 (109/1294) 0 * Os_TE_340016 Os_TE_340016 Chr4 3433024 3433023 - RETROSAT2LTR 12796 0.0883 (114/1291) 0 * Os_TE_340017 Os_TE_340012 Chr4 3432508 3432287 + ORSgTEMT02400041 225 0.5460 (1311/2401) 1 Intact Os_TE_340010 Os_TE_340010 Chr4 3432284 3432501 - ORSgTEMT02400246 177 0.5656 (1302/2302) 1 Intact Os_TE_340012 Os_TE_340003 Chr4 3430638 3430637 + CACTA-G1 797 0.0008 (2/2360) 0 * * Os_TE_340002 Chr4 3430413 3430414 + RIRE3_LTR 12054 0.1087 (259/2383) 0 * * Os_TE_339999 Chr4 3429935 3429936 - ORSgTERT00201216 11284 0.0004 (1/2561) 0 * Os_TE_339998 Os_TE_339998 Chr4 3429931 3429930 - RIRE2_LTR 11306 0.0004 (1/2517) 0 * Os_TE_339999 Os_TE_339993 Chr4 3429461 3429462 - ORSgTEMT00900760 239 0.4972 (1235/2484) 0 * * Os_TE_339992 Chr4 3428834 3428835 - MuDR4_OS 7610 0.0265 (34/1285) 0 * * Os_TE_339989 Chr4 3428174 3428175 + TRUNCATOR2_LTR 2904 0.1067 (256/2400) 0 * * Os_TE_339987 Chr4 3427974 3427725 - STOWAWAY8_OS 259 0.5252 (1252/2384) 1 Intact * Os_TE_339978 Chr4 3427339 3427340 - STOWAWAY44_OS 240 0.0024 (7/2942) 0 * Os_TE_339977 Os_TE_339977 Chr4 3427335 3427334 + STOWAWAY44_OS 240 0.0020 (6/2972) 0 * Os_TE_339978 Os_TE_339954 Chr4 3421977 3421978 + SZ-48LTR 3632 0.0012 (3/2443) 0 * Os_TE_339953 Os_TE_339953 Chr4 3421973 3421972 - SZ-48LTR 3632 0.0013 (3/2361) 0 * Os_TE_339954 Os_TE_339950 Chr4 3421685 3421686 - ORSgTETN00200001 10994 0.0175 (42/2401) 0 * * Os_TE_339948 Chr4 3421326 3421192 - CACTA-H 1152 0.4444 (983/2212) 1 Intact * Os_TE_339785 Chr4 3303783 3303782 - RETROSAT2LTRA 3112 0.0801 (170/2122) 0 * * Os_TE_339783 Chr4 3303753 3303752 - RIRE3_LTR 12054 0.0052 (13/2515) 0 * * Os_TE_339779 Chr4 3302539 3302538 - TRUNCATOR 2918 0.0381 (81/2126) 0 * * Os_TE_339776 Chr4 3302507 3302506 + RIRE3_LTR 12054 0.0953 (206/2162) 0 * * Os_TE_339762 Chr4 3300865 3300866 + SPMLIKE 10989 0.4723 (1059/2242) 0 * Os_TE_339761 Os_TE_339761 Chr4 3300863 3300862 - SPMLIKE 10989 0.4429 (978/2208) 0 * Os_TE_339762 Os_TE_339756 Chr4 3298833 3299069 - ORSgTEMT01600639 228 0.1262 (324/2568) 1 Intact * Os_TE_339754 Chr4 3298681 3298443 - ORSgTEMT01400014 209 0.1856 (362/1950) 1 Intact Os_TE_339752 Os_TE_339752 Chr4 3298443 3298648 - ORSgTEMT01400014 209 0.1825 (389/2131) 1 Intact Os_TE_339754 Os_TE_339681 Chr4 3254102 3254101 - SZ-9LTR 965 0.0003 (1/2950) 0 * * Os_TE_339414 Chr4 3166278 3166279 + CACTA-M 1129 0.0910 (188/2065) 0 * * Os_TE_339409 Chr4 3165166 3153485 + TRUNCATOR 2918 0.1021 (175/1714) 1 Intact Os_TE_339359 Os_TE_339359 Chr4 3153487 3163042 - ORSiTERT00200154 9386 0.0842 (169/2008) 1 Intact Os_TE_339409 Os_TE_339352 Chr4 3151842 3151843 - ORSgTEMT01601208 238 0.0024 (5/2082) 0 * * Os_TE_339351 Chr4 3151367 3151368 + RIREX_LTR 8828 0.0295 (62/2099) 0 * Os_TE_339350 Os_TE_339350 Chr4 3151363 3151362 - RIREX_LTR 8828 0.0298 (62/2082) 0 * Os_TE_339351 Os_TE_339313 Chr4 3139825 3139824 + RIREX_LTR 8828 0.0595 (48/807) 0 * * Os_TE_339307 Chr4 3137429 3137428 - ORSgTETN00200001 10994 0.3733 (589/1578) 0 * * Os_TE_339229 Chr4 3115143 3115144 - RETROSAT2LTRA 3112 0.0344 (49/1423) 0 * * Os_TE_339218 Chr4 3111946 3111947 - ORSgTEMT01600639 228 0.0039 (7/1785) 0 * * Os_TE_339209 Chr4 3107475 3096740 + SPMLIKE 10989 0.1013 (177/1747) 1 Intact * Os_TE_339190 Chr4 3096292 3084092 + TRUNCATOR 2918 0.1039 (183/1762) 1 Intact Os_TE_339169 Os_TE_339169 Chr4 3084087 3096292 - TRUNCATOR 2918 0.0995 (174/1749) 1 Intact Os_TE_339190 Os_TE_339168 Chr4 3084035 3084036 - SZ-5LTR 1223 0.0029 (5/1750) 0 * * Os_TE_339142 Chr4 3078277 3078276 + CACTA-I 1124 0.0529 (93/1759) 0 * * Os_TE_339103 Chr4 3061902 3061901 + TRUNCATOR 2918 0.3972 (661/1664) 0 * * Os_TE_339017 Chr4 3001814 3001813 + COPIA2-LTR_OS 6433 0.0006 (1/1554) 0 * * Os_TE_339011 Chr4 2999429 2999430 - RIRE2_LTR 11306 0.0320 (48/1499) 0 * * Os_TE_339008 Chr4 2997986 2997987 + RIREX_LTR 8828 0.0135 (19/1404) 0 * Os_TE_339007 Os_TE_339007 Chr4 2997982 2997981 - RIREX_LTR 8828 0.0144 (20/1389) 0 * Os_TE_339008 Os_TE_338968 Chr4 2983630 2983631 - ORSgTETNOOT01398 180 0.0012 (2/1700) 0 * * Os_TE_338951 Chr4 2976154 2971746 + SZ-22_LTR 4403 0.8140 (1243/1527) 0.87 Intact * Os_TE_338908 Chr4 2971704 2971703 + RIRE2_LTR 11306 0.0012 (1/842) 0 * * Os_TE_338900 Chr4 2962815 2966193 - GYPSY-A_LTR 8951 0.1836 (190/1035) 1 Solo_LTR * Os_TE_338896 Chr4 2962464 2962463 - ORSgTETN00200001 10994 0.0215 (33/1533) 0 * * Os_TE_338783 Chr4 2912751 2912752 - RIREX_LTR 8828 0.0399 (96/2404) 0 * Os_TE_338782 Os_TE_338782 Chr4 2912747 2912746 + RIREX_LTR 8828 0.0403 (97/2406) 0 * Os_TE_338783 Os_TE_338761 Chr4 2906378 2895053 - RIRE2_LTR 11306 0.0716 (193/2697) 1 Intact Os_TE_338731 Os_TE_338731 Chr4 2895053 2906378 + RIRE2_LTR 11306 0.0725 (199/2746) 1 Intact Os_TE_338761 Os_TE_338722 Chr4 2889637 2889492 + TNR2A 152 0.0675 (182/2696) 1 Intact * Os_TE_338721 Chr4 2889448 2889447 + ORSgTEMT00500476 150 0.0016 (4/2507) 0 * Os_TE_338720 Os_TE_338720 Chr4 2889446 2889447 + ORSgTEMT00500070 150 0.0018 (5/2703) 0 * Os_TE_338721 Os_TE_338617 Chr4 2823303 2823304 - RIRE2_LTR 11306 0.0041 (12/2953) 0 * Os_TE_338616 Os_TE_338616 Chr4 2823299 2823298 - ORSgTERT00201216 11284 0.0044 (13/2959) 0 * Os_TE_338617 Os_TE_338615 Chr4 2822981 2822982 + RETRO2_LTR 12874 0.0004 (1/2374) 0 * * Os_TE_338607 Chr4 2817219 2817220 + SPMLIKE 10989 0.0343 (101/2943) 0 * * Os_TE_338602 Chr4 2816321 2816320 + RIRE2_LTR 11306 0.0064 (19/2981) 0 * * Os_TE_338601 Chr4 2816030 2816029 + RIREX_LTR 8828 0.0003 (1/2971) 0 * * Os_TE_338578 Chr4 2812026 2812591 + BUHUI 375 0.8282 (2271/2742) 1 Intact * Os_TE_338572 Chr4 2809269 2809270 + COPIA2-LTR_OS 6433 0.0008 (2/2527) 0 * Os_TE_338571 Os_TE_338571 Chr4 2809265 2809264 - COPIA2-LTR_OS 6433 0.0008 (2/2523) 0 * Os_TE_338572 Os_TE_338569 Chr4 2808617 2808616 - SZ-67LTR 1540 0.0567 (149/2627) 0 * * Os_TE_338568 Chr4 2808474 2808473 + ORSiTERT00100071 4657 0.0335 (89/2654) 0 * * Os_TE_338567 Chr4 2807668 2807669 - CACTA-Q 2268 0.0033 (3/899) 0 * * Os_TE_338492 Chr4 2764286 2764285 + CACTA-B 1103 0.0008 (1/1205) 0 * * Os_TE_338491 Chr4 2764284 2764285 - RIRE3_LTR 12054 0.0017 (2/1195) 0 * * Os_TE_338490 Chr4 2764078 2764077 - ENSPM4_OS 11610 0.0017 (1/585) -1 * * Os_TE_338469 Chr4 2758986 2758987 - ORSgTEMT00101623 324 0.1280 (341/2664) 0 * * Os_TE_338468 Chr4 2758984 2758983 + ORSgTEMT00100436 320 0.2003 (532/2656) 0 * * Os_TE_338467 Chr4 2758975 2758976 - MPING 430 0.0004 (1/2668) 0 * Os_TE_338466 Os_TE_338466 Chr4 2758973 2758972 + MPING 430 0.0005 (1/2161) 0 * Os_TE_338467 Os_TE_338465 Chr4 2758962 2758963 - ORSgTETN00200001 10994 0.0045 (12/2674) 0 * Os_TE_338463 Os_TE_338463 Chr4 2758949 2758948 - TRUNCATOR 2918 0.0019 (5/2646) 0 * Os_TE_338465 Os_TE_338462 Chr4 2758948 2758949 + TRUNCATOR 2918 0.0019 (5/2675) 0 * * Os_TE_338461 Chr4 2758930 2758931 - RIRE2_LTR 11306 0.0123 (32/2601) 0 * Os_TE_338460 Os_TE_338460 Chr4 2758926 2758925 + RIRE2_LTR 11306 0.0123 (33/2690) 0 * Os_TE_338461 Os_TE_338459 Chr4 2758240 2758241 + ECSR 154 0.0993 (270/2718) 0 * * Os_TE_338455 Chr4 2757733 2757969 + ORSgTEMT01601525 239 0.8082 (2115/2617) 1 Intact * Os_TE_338454 Chr4 2757223 2757224 - TRUNCATOR2_LTR 2904 0.0173 (41/2366) 0 * Os_TE_338453 Os_TE_338453 Chr4 2757219 2757218 + TRUNCATOR2_LTR 2904 0.0164 (39/2385) 0 * Os_TE_338454 Os_TE_338438 Chr4 2751928 2751929 + RIREX_LTR 8828 0.0007 (2/2714) 0 * Os_TE_338437 Os_TE_338437 Chr4 2751924 2751923 - RIREX_LTR 8828 0.0007 (2/2712) 0 * Os_TE_338438 Os_TE_338381 Chr4 2739564 2739563 + CACTA-B 1103 0.0161 (38/2362) 0 * * Os_TE_338330 Chr4 2707576 2707577 - SZ-9LTR 965 0.0148 (21/1420) 0 * Os_TE_338329 Os_TE_338329 Chr4 2707572 2707571 + SZ-9LTR 965 0.0148 (21/1419) 0 * Os_TE_338330 Os_TE_338270 Chr4 2675218 2693334 - GYPSY1-LTR_OS 8900 0.7514 (801/1066) 1 Intact * Os_TE_338260 Chr4 2674258 2674259 + COPIA2-LTR_OS 6433 0.0005 (1/2150) 0 * * Os_TE_338259 Chr4 2674077 2674078 - COPI2_LTR 4733 0.0019 (4/2140) 0 * * Os_TE_338257 Chr4 2672701 2672702 + ORSiCMCM00100019 2717 0.1150 (248/2156) 0 * * Os_TE_338020 Chr4 2545903 2545904 + ORSiCMCM00100019 2717 0.0005 (1/2121) 0 * * Os_TE_338007 Chr4 2538221 2538222 + RIREX_LTR 8828 0.0015 (4/2665) 0 * Os_TE_338006 Os_TE_338006 Chr4 2538217 2538216 - RIREX_LTR 8828 0.0009 (2/2169) 0 * Os_TE_338007 Os_TE_338001 Chr4 2537094 2536853 + ORSiTEMT01000008 242 0.6143 (1602/2608) 1 Intact Os_TE_337999 Os_TE_337999 Chr4 2536853 2537094 - ORSiTEMT01000008 242 0.6341 (1712/2700) 1 Intact Os_TE_338001 Os_TE_337996 Chr4 2536477 2536476 - COPIA2-LTR_OS 6433 0.0241 (65/2701) 0 * * Os_TE_337993 Chr4 2536005 2536004 - ORSgTERT00201216 11284 0.0245 (65/2658) 0 * * Os_TE_337991 Chr4 2535555 2535556 + SPMLIKE 10989 0.0299 (62/2075) 0 * * Os_TE_337987 Chr4 2534935 2534934 + COPI2_LTR 4733 0.0004 (1/2700) 0 * * Os_TE_337986 Chr4 2534909 2534910 + COPIA2-LTR_OS 6433 0.0004 (1/2686) 0.64 * Os_TE_337985 Os_TE_337985 Chr4 2534905 2534904 - COPIA2-LTR_OS 6433 0.0004 (1/2693) 0.75 * Os_TE_337986 Os_TE_337983 Chr4 2534865 2534864 - ORSgTERT00201216 11284 0.0936 (253/2704) 0 * * Os_TE_337982 Chr4 2534380 2534381 - RIREX_LTR 8828 0.0004 (1/2719) 0 * Os_TE_337981 Os_TE_337981 Chr4 2534376 2534375 + RIREX_LTR 8828 0.0004 (1/2718) 0 * Os_TE_337982 Os_TE_337979 Chr4 2533955 2533956 - ORSgTEMT02400246 177 0.0420 (114/2713) 0 * Os_TE_337978 Os_TE_337978 Chr4 2533952 2533951 - TYPEM 227 0.0416 (113/2714) 0 * Os_TE_337979 Os_TE_337977 Chr4 2532853 2532854 - RIRE2_LTR 11306 0.0255 (69/2701) 0 * Os_TE_337976 Os_TE_337976 Chr4 2532849 2532848 - ORSgTERT00201216 11284 0.0266 (72/2704) 0 * Os_TE_337977 Os_TE_337974 Chr4 2531867 2531866 + RIREX_LTR 8828 0.0265 (71/2675) 0 * * Os_TE_337973 Chr4 2531571 2530357 + SZ-5LTR 1223 0.3471 (991/2855) 1 Intact * Os_TE_337964 Chr4 2524933 2524934 + SPMLIKE 10989 0.0007 (2/2739) 0 * Os_TE_337963 Os_TE_337963 Chr4 2524931 2524930 - ORSgTETN00200001 10994 0.0007 (2/2688) 0 * Os_TE_337964 Os_TE_337962 Chr4 2524763 2524762 - F569 228 0.0017 (2/1166) 0 * * Os_TE_337961 Chr4 2524528 2524529 - EnSpm-13_OS 11171 0.0163 (44/2703) 0 * Os_TE_337960 Os_TE_337960 Chr4 2524526 2524525 + EnSpm-13_OS 11171 0.0170 (46/2709) 0 * Os_TE_337961 Os_TE_337957 Chr4 2523295 2523296 - RETRO2_LTR 12874 0.0008 (1/1249) 0 * * Os_TE_337954 Chr4 2522869 2522868 + F1275 157 0.0007 (2/2942) 0 * * Os_TE_337953 Chr4 2521087 2521088 - SZ-67LTR 1540 0.1578 (472/2992) 0 * Os_TE_337952 Os_TE_337952 Chr4 2521083 2521082 + ORSiTERT00200145 12238 0.1558 (463/2971) 0 * Os_TE_337953 Os_TE_337949 Chr4 2517648 2517647 + TRUNCATOR 2918 0.0127 (38/2982) 0 * * Os_TE_337947 Chr4 2517348 2517347 - TRUNCATOR 2918 0.0017 (5/2930) 0 * Os_TE_337946 Os_TE_337946 Chr4 2517347 2517348 + TRUNCATOR 2918 0.0017 (5/2975) 0 * Os_TE_337947 Os_TE_337939 Chr4 2515091 2515092 - FOCUS 257 0.0003 (1/2951) 0 * * Os_TE_337928 Chr4 2510772 2510773 + YOUREN 286 0.0010 (3/2986) 0 * * Os_TE_337926 Chr4 2510679 2510680 + HATOS1 3488 0.0238 (71/2986) 0 * Os_TE_337925 Os_TE_337925 Chr4 2510672 2510671 - HATOS1 3488 0.0244 (73/2986) 0 * Os_TE_337926 Os_TE_337920 Chr4 2510129 2510130 + COPI2_LTR 4733 0.0004 (1/2821) 0 * * Os_TE_337908 Chr4 2499346 2499345 - ORSiRGRR00000001 280 0.0331 (99/2994) 0 * * Os_TE_337907 Chr4 2498621 2498620 - ORSgTEMT01701728 154 0.4846 (1398/2885) 0 * * Os_TE_337903 Chr4 2498134 2498135 + TWIF 586 0.0003 (1/2975) 0 * * Os_TE_337900 Chr4 2497764 2497765 - NDNA1TNA_OS 334 0.0622 (186/2991) 0 * Os_TE_337899 Os_TE_337899 Chr4 2497762 2497761 + NDNA1TNA_OS 334 0.0622 (186/2992) 0 * Os_TE_337900 Os_TE_337891 Chr4 2492229 2492230 - ENSPM4_OS 11610 0.0268 (80/2986) 0 * * Os_TE_337883 Chr4 2490928 2490929 - AMYLTP 383 0.0010 (3/2866) -1 * Os_TE_337882 Os_TE_337882 Chr4 2490920 2490919 + AMYLTP 383 0.0010 (3/2872) -1 * Os_TE_337883 Os_TE_337878 Chr4 2490351 2490352 - RIRE2_LTR 11306 0.0105 (31/2958) 0 * Os_TE_337877 Os_TE_337877 Chr4 2490347 2490346 - ORSgTERT00201216 11284 0.0101 (30/2956) 0 * Os_TE_337878 Os_TE_337876 Chr4 2490107 2490108 + ORSgTETNOOT00908 242 0.0007 (2/2931) 0 * * Os_TE_337875 Chr4 2489912 2489913 - MuDR2_OS 6770 0.0265 (77/2906) 0 * * Os_TE_337852 Chr4 2482711 2482712 + ORSgTEMT01601591 242 0.0013 (4/2988) 0 * * Os_TE_337850 Chr4 2481742 2481743 + MPING 430 0.0361 (108/2990) 0 * Os_TE_337849 Os_TE_337849 Chr4 2481740 2481739 - MPING 430 0.0358 (107/2992) 0 * Os_TE_337850 Os_TE_337843 Chr4 2478262 2478261 - NDNA2TNA_OS 346 0.0005 (1/2209) 0 * * Os_TE_337837 Chr4 2477451 2477452 + ORSgTETNOOT00908 242 0.0281 (80/2850) 0 * * Os_TE_337831 Chr4 2475250 2475249 + ORSgTETNOOT01668 244 0.0131 (38/2910) 0 * * Os_TE_337824 Chr4 2471612 2471613 - NDNA1TNA_OS 334 0.0020 (6/2945) 0 * Os_TE_337823 Os_TE_337823 Chr4 2471611 2471610 + NDNA1TNA_OS 334 0.0020 (6/2992) 0 * Os_TE_337824 Os_TE_337822 Chr4 2471206 2471205 + ORSgTEMT00600448 360 0.0198 (59/2982) 0 * * Os_TE_337821 Chr4 2471148 2471147 + ORSgTEMT01601092 239 0.0014 (4/2927) 0 * * Os_TE_337820 Chr4 2470707 2470708 - ORSgTEMT00501356 145 0.0004 (1/2815) 0 * * Os_TE_337813 Chr4 2469859 2469860 + ORSgTETNOOT01690 244 0.0014 (4/2890) 0 * Os_TE_337812 Os_TE_337812 Chr4 2469857 2469856 + ORSgTETNOOT02316 263 0.0020 (6/2968) 0 * Os_TE_337813 Os_TE_337810 Chr4 2468863 2468862 + STOWAWAY48_OS 261 0.0187 (56/2987) 0 * * Os_TE_337809 Chr4 2468787 2468788 - RIREX_LTR 8828 0.0040 (12/2975) 0 * Os_TE_337808 Os_TE_337808 Chr4 2468783 2468782 + RIREX_LTR 8828 0.0040 (12/2975) 0 * Os_TE_337809 Os_TE_337807 Chr4 2468777 2468778 + COPIA2-LTR_OS 6433 0.0003 (1/2977) 0 * Os_TE_337806 Os_TE_337806 Chr4 2468773 2468772 - COPIA2-LTR_OS 6433 0.0003 (1/2969) 0 * Os_TE_337807 Os_TE_337792 Chr4 2467521 2467522 - MPING 430 0.0020 (6/2937) 0 * * Os_TE_337789 Chr4 2467265 2467266 + RIREX_LTR 8828 0.0007 (2/2973) 0 * Os_TE_337788 Os_TE_337788 Chr4 2467261 2467260 - RIREX_LTR 8828 0.0007 (2/2940) 0 * Os_TE_337789 Os_TE_337786 Chr4 2466946 2466945 - ORSgTEMT01601432 239 0.0051 (15/2918) 0 * Os_TE_337785 Os_TE_337785 Chr4 2466943 2466944 + ORSgTEMT01602181 239 0.0041 (12/2914) 0 * Os_TE_337786 Os_TE_337783 Chr4 2466754 2466755 - INDITTO 263 0.0029 (8/2720) 0 * * Os_TE_337774 Chr4 2465394 2465395 - INDITTO 263 0.1029 (299/2905) 0 * Os_TE_337773 Os_TE_337773 Chr4 2465392 2465391 + INDITTO 263 0.1076 (300/2788) 0 * Os_TE_337774 Os_TE_337771 Chr4 2464795 2464794 - ORSgTEMT00500110 151 0.0024 (7/2961) 0 * * Os_TE_337765 Chr4 2463394 2463393 - SEVERIN-2 1952 0.0020 (6/2943) 0 * * Os_TE_337750 Chr4 2460743 2460742 - ORSgTEMT01400006 213 0.0003 (1/2933) 0 * * Os_TE_337747 Chr4 2460604 2460603 - ORSgTEMT01400038 210 0.7316 (2153/2943) 0 * Os_TE_337746 Os_TE_337746 Chr4 2460598 2460599 + ORSgTEMT01400032 215 0.7215 (2073/2873) 0 * Os_TE_337747 Os_TE_337739 Chr4 2457811 2457810 - ORSgTETN00200001 10994 0.0553 (160/2895) 0 * Os_TE_337738 Os_TE_337738 Chr4 2457810 2457811 + CACTA-B 1103 0.0542 (159/2935) 0 * Os_TE_337739 Os_TE_337735 Chr4 2456865 2456864 + STOWAWAY50_OS 174 0.0226 (67/2968) 0 * * Os_TE_337733 Chr4 2456716 2456717 + RIRE2_LTR 11306 0.0010 (3/2936) 0 * Os_TE_337732 Os_TE_337732 Chr4 2456712 2456711 - RIRE2_LTR 11306 0.0010 (3/2971) 0 * Os_TE_337733 Os_TE_337731 Chr4 2456090 2456091 + RIREX_LTR 8828 0.0010 (3/2981) 0 * Os_TE_337730 Os_TE_337730 Chr4 2456086 2456085 - RIREX_LTR 8828 0.0014 (4/2938) 0 * Os_TE_337731 Os_TE_337729 Chr4 2455913 2455912 - TYPEM 227 0.0007 (2/2964) 0 * Os_TE_337728 Os_TE_337728 Chr4 2455912 2455913 - ORSgTEMT02400034 225 0.0003 (1/2965) 0 * Os_TE_337729 Os_TE_337725 Chr4 2455378 2455379 + MPING 430 0.0007 (2/2685) 0 * Os_TE_337724 Os_TE_337724 Chr4 2455376 2455375 - MPING 430 0.0007 (2/2718) 0 * Os_TE_337725 Os_TE_337721 Chr4 2453970 2453971 - RIRE2_LTR 11306 0.0003 (1/2953) 0 * Os_TE_337720 Os_TE_337720 Chr4 2453966 2453965 - ORSgTERT00201216 11284 0.0003 (1/2942) 0 * Os_TE_337721 Os_TE_337719 Chr4 2453817 2453818 - RIRE3A_LTR 10580 0.0014 (4/2952) 0 * Os_TE_337718 Os_TE_337718 Chr4 2453813 2453812 + RIRE3A_LTR 10580 0.0014 (4/2951) 0 * Os_TE_337719 Os_TE_337717 Chr4 2452969 2452970 + AMYLTP 383 0.0021 (6/2898) 0 * Os_TE_337716 Os_TE_337716 Chr4 2452961 2452960 - AMYLTP 383 0.0021 (6/2887) 0 * Os_TE_337717 Os_TE_337714 Chr4 2452025 2449002 + MDR2 6967 0.0547 (162/2962) 1 Intact Os_TE_337712 Os_TE_337712 Chr4 2449002 2452025 - MDR2 6967 0.0541 (160/2955) 1 Intact Os_TE_337714 Os_TE_337706 Chr4 2447086 2447087 + ORSgTEMT00600272 361 0.0732 (219/2991) 0 * * Os_TE_337703 Chr4 2446854 2446855 - ORSgTEMT01602467 227 0.0020 (6/2992) 0 * * Os_TE_337701 Chr4 2444642 2444643 + COWARD-3 221 0.0010 (3/2952) 0 * * Os_TE_337696 Chr4 2440896 2440895 + ORSgTEMT01400031 216 0.0017 (5/2876) 0 * Os_TE_337695 Os_TE_337695 Chr4 2440893 2440894 + ORSgTEMT01400031 216 0.0018 (5/2725) 0 * Os_TE_337696 Os_TE_337689 Chr4 2431964 2431965 - OSTE15 1168 0.0074 (22/2981) 0 * * Os_TE_337688 Chr4 2431913 2431914 - RETROSAT3_LTR 11537 0.0063 (19/2994) 0 * * Os_TE_337687 Chr4 2430755 2430439 - ORSgTEMT00100408 333 0.0648 (161/2484) 1 Intact Os_TE_337680 Os_TE_337680 Chr4 2430432 2430754 + ORSgTEMT00100291 345 0.0560 (164/2931) 1 Intact Os_TE_337687 Os_TE_337672 Chr4 2426862 2426863 - COPIA2-LTR_OS 6433 0.0003 (1/2899) 0 * Os_TE_337671 Os_TE_337671 Chr4 2426859 2426858 + COPIA2-LTR_OS 6433 0.0003 (1/2975) 0 * Os_TE_337672 Os_TE_337669 Chr4 2426257 2426258 - ORSiTETNOOT00216 3569 0.0014 (4/2946) 0 * Os_TE_337668 Os_TE_337668 Chr4 2426250 2426249 + TWIFBIG 3567 0.0011 (3/2745) 0 * Os_TE_337669 Os_TE_337666 Chr4 2425803 2425802 - MERMITE18E 1528 0.0108 (32/2963) 0 * * Os_TE_337642 Chr4 2413713 2413714 + MERMITE-18 1263 0.0007 (2/2883) 0 * * Os_TE_337627 Chr4 2408996 2408734 + ORSgTETNOOT00221 261 0.7890 (2330/2953) 1 Intact * Os_TE_337623 Chr4 2408706 2408705 - MuDR4_OS 7610 0.0017 (5/2893) 0 * * Os_TE_337611 Chr4 2406916 2406915 - ORSgTERT00201216 11284 0.1175 (347/2953) 0 * * Os_TE_337582 Chr4 2404666 2404665 + SEVERIN-2 1952 0.0013 (4/2967) 0 * * Os_TE_337561 Chr4 2402193 2402192 - ORSgTETN00200001 10994 0.0233 (40/1714) 0 * * Os_TE_337542 Chr4 2400683 2400883 - ORSgTEMT00901856 250 0.8438 (416/493) 1 Intact * Os_TE_337531 Chr4 2399675 2399676 + OLO24 345 0.0137 (19/1383) 0 * Os_TE_337530 Os_TE_337530 Chr4 2399673 2399672 - OLO24 345 0.0140 (19/1353) 0 * Os_TE_337531 Os_TE_337529 Chr4 2399034 2399033 + ORSgTEMT00101674 340 0.0021 (3/1414) 0 * * Os_TE_337528 Chr4 2397986 2397987 + NDNA1TNA_OS 334 0.0035 (5/1438) 0 * * Os_TE_337521 Chr4 2396665 2396664 + SPMLIKE 10989 0.0010 (3/2918) 0 * * Os_TE_337520 Chr4 2396551 2396552 - UNIQUE 158 0.8406 (2289/2723) 0 * Os_TE_337519 Os_TE_337519 Chr4 2396549 2396548 + UNIQUE 158 0.8428 (2476/2938) 0 * Os_TE_337520 Os_TE_337517 Chr4 2396107 2396108 + ENSPM4_OS 11610 0.0014 (4/2884) 0 * * Os_TE_337516 Chr4 2395615 2395614 - HELITRON7_OS 10153 0.0077 (21/2730) 0 * Os_TE_337515 Os_TE_337515 Chr4 2395611 2395612 + HELITRON7_OS 10153 0.0070 (21/2981) 0 * Os_TE_337516 Os_TE_337507 Chr4 2394273 2394274 + STOWAWAY24_OS 224 0.0739 (216/2922) 0 * * Os_TE_337499 Chr4 2392440 2392439 + CACTA-K 1131 0.8252 (2436/2952) 0 * * Os_TE_337487 Chr4 2390435 2390436 + SPMLIKE 10989 0.0091 (27/2958) 0 * Os_TE_337486 Os_TE_337486 Chr4 2390433 2390432 - ORSgTETN00200001 10994 0.0100 (27/2693) 0 * Os_TE_337487 Os_TE_337485 Chr4 2390236 2390237 + TRUNCATOR 2918 0.0041 (12/2958) 0 * Os_TE_337484 Os_TE_337484 Chr4 2390230 2390229 - ORSiTERT00200154 9386 0.0044 (13/2957) 0 * Os_TE_337485 Os_TE_337479 Chr4 2389478 2389477 + RETRO2_LTR 12874 0.0010 (3/2971) 0 * * Os_TE_337475 Chr4 2388887 2388888 + ORSiCMCM00100019 2717 0.0209 (61/2919) 0 * * Os_TE_337471 Chr4 2387168 2387169 - RIRE3_LTR 12054 0.0164 (48/2931) 0 * Os_TE_337470 Os_TE_337470 Chr4 2387164 2387163 + RIRE3_LTR 12054 0.0164 (48/2927) 0 * Os_TE_337471 Os_TE_337445 Chr4 2372974 2372973 - MUDRN2_OS 756 0.0013 (3/2387) 0 * * Os_TE_337335 Chr4 2311032 2309692 - CACTA-H 1152 0.1520 (361/2375) 1 Intact * Os_TE_337330 Chr4 2309565 2309566 - HELITRON4_OS 13190 0.0417 (99/2373) 0 * * Os_TE_337320 Chr4 2305370 2305136 - STOWAWAY14_OS 258 0.4712 (549/1165) 1 Intact * Os_TE_337292 Chr4 2288658 2288657 + SPMLIKE 10989 0.0128 (38/2971) 0 * * Os_TE_337291 Chr4 2288543 2288544 - MPING 430 0.0295 (66/2235) 0 * Os_TE_337290 Os_TE_337290 Chr4 2288541 2288540 + MPING 430 0.0340 (98/2880) 0 * Os_TE_337291 Os_TE_337288 Chr4 2288031 2288032 + MDR2 6967 0.0007 (2/2978) 0 * Os_TE_337287 Os_TE_337287 Chr4 2288023 2288022 - MDR2 6967 0.0007 (2/2988) 0 * Os_TE_337288 Os_TE_337285 Chr4 2287826 2287827 - ENSPM4_OS 11610 0.0298 (89/2984) 0 * * Os_TE_337273 Chr4 2283661 2283662 - ORSgTEMT00502287 149 0.0024 (7/2953) 0 * * Os_TE_337272 Chr4 2283485 2283484 + ORSgTEMT01601591 242 0.0077 (19/2456) 0 * Os_TE_337271 Os_TE_337271 Chr4 2283482 2283483 + ORSgTEMT01601591 242 0.0075 (18/2386) 0 * Os_TE_337272 Os_TE_337269 Chr4 2281763 2281764 - ORSgTETN00200001 10994 0.0007 (2/2989) 0 * Os_TE_337268 Os_TE_337268 Chr4 2281761 2281760 + SPMLIKE 10989 0.0007 (2/2983) 0 * Os_TE_337269 Os_TE_337226 Chr4 2257513 2257514 - COPIA2-LTR_OS 6433 0.0008 (1/1257) 0 * Os_TE_337225 Os_TE_337225 Chr4 2257509 2257508 + COPIA2-LTR_OS 6433 0.0008 (1/1255) 0 * Os_TE_337226 Os_TE_337224 Chr4 2257375 2257376 + RIRE3_LTR 12054 0.0175 (22/1254) 0 * Os_TE_337223 Os_TE_337223 Chr4 2257371 2257370 - RIRE3_LTR 12054 0.0191 (24/1258) 0 * Os_TE_337224 Os_TE_337209 Chr4 2250890 2250889 + RIREX_LTR 8828 0.0020 (4/1978) 0 * * Os_TE_337208 Chr4 2250809 2250810 - TNR3 1536 0.0525 (110/2095) 0 * * Os_TE_337204 Chr4 2249752 2249751 - ENSPM4_OS 11610 0.0055 (12/2171) 0 * * Os_TE_337195 Chr4 2247756 2247757 - CACTA-M 1129 0.0018 (4/2231) 0 * Os_TE_337194 Os_TE_337194 Chr4 2247754 2247753 + CACTA-M 1129 0.0018 (4/2221) 0 * Os_TE_337195 Os_TE_337193 Chr4 2247703 2247702 - MERMITEA 1710 0.0005 (1/2221) 0 * * Os_TE_337174 Chr4 2239116 2242306 + RETROSAT2LTR 12796 0.1046 (225/2151) 1 Solo_LTR * Os_TE_337156 Chr4 2236156 2236155 - SZ-62LTR 3649 0.0004 (1/2237) 0 * * Os_TE_337152 Chr4 2234471 2234470 + ORSgTEMT01602188 240 0.1172 (260/2219) 0 * * Os_TE_337147 Chr4 2232349 2232350 - RIREX_LTR 8828 0.0018 (4/2253) 0 * * Os_TE_337143 Chr4 2231235 2231234 - MERMITEA 1710 0.1183 (266/2249) 0 * Os_TE_337142 Os_TE_337142 Chr4 2231234 2231235 - MERMITEA 1710 0.1213 (274/2258) 0 * Os_TE_337143 Os_TE_337141 Chr4 2231228 2231229 - MERMITEA 1710 0.1210 (273/2257) 0 * Os_TE_337140 Os_TE_337140 Chr4 2231225 2231224 - MERMITEA 1710 0.1096 (265/2417) 0 * Os_TE_337141 Os_TE_337139 Chr4 2231125 2231126 + ENSPM4_OS 11610 0.0020 (4/2014) 0 * * Os_TE_337138 Chr4 2230220 2230221 + COPI2_LTR 4733 0.0004 (1/2259) 0 * Os_TE_337137 Os_TE_337137 Chr4 2230216 2230215 - COPI2_LTR 4733 0.0004 (1/2259) 0 * Os_TE_337138 Os_TE_337136 Chr4 2230204 2230205 - RETROSAT4_LTR 13504 0.0004 (1/2259) 0 * Os_TE_337135 Os_TE_337135 Chr4 2230200 2230199 + RETROSAT4_LTR 13504 0.0004 (1/2261) 0 * Os_TE_337136 Os_TE_337134 Chr4 2229730 2229731 - ENSPM4_OS 11610 0.0004 (1/2231) 0 * * Os_TE_337126 Chr4 2227182 2227183 - MPING 430 0.0009 (2/2211) 0 * Os_TE_337125 Os_TE_337125 Chr4 2227180 2227179 + MPING 430 0.0010 (2/1973) 0 * Os_TE_337126 Os_TE_337121 Chr4 2225243 2225244 + OSTE20 496 0.1118 (245/2191) 0 * Os_TE_337120 Os_TE_337120 Chr4 2225239 2225238 - OSTE20 496 0.1162 (259/2228) 0 * Os_TE_337121 Os_TE_337115 Chr4 2223705 2223704 - SZLTR 1249 0.0005 (1/2168) 0 * * Os_TE_337112 Chr4 2222758 2222759 - SZ-35LTR 3853 0.0004 (1/2399) 0 * Os_TE_337111 Os_TE_337111 Chr4 2222755 2222754 + RETROSAT4_LTR 13504 0.0004 (1/2437) 0 * Os_TE_337112 Os_TE_337110 Chr4 2222003 2222004 - RIRE2_LTR 11306 0.0578 (129/2233) 0 * * Os_TE_337105 Chr4 2220841 2220842 + OSTE33 1012 0.6185 (1339/2165) 0 * Os_TE_337104 Os_TE_337104 Chr4 2220832 2220831 + OSTE33 1012 0.6009 (1405/2338) 0 * Os_TE_337105 Os_TE_337102 Chr4 2218445 2215454 + TRUNCATOR 2918 0.2905 (251/864) 1 Intact Os_TE_337093 Os_TE_337093 Chr4 2215449 2218445 - TRUNCATOR 2918 0.2847 (240/843) 1 Intact Os_TE_337102 Os_TE_337091 Chr4 2214277 2214113 - STOWAWAY50_OS 174 0.3924 (381/971) 1 Intact Os_TE_337088 Os_TE_337088 Chr4 2214113 2214277 - ORSgTEMT01701882 154 0.3797 (251/661) 1 Intact Os_TE_337091 Os_TE_337086 Chr4 2213721 2212455 + ORSgTETN00200004 1343 0.6066 (822/1355) 1 Intact Os_TE_337084 Os_TE_337084 Chr4 2212454 2213687 + CACTA-D 1038 0.7956 (798/1003) 1 Intact Os_TE_337086 Os_TE_337080 Chr4 2212064 2212355 - STOWAWAY11_OS 292 0.5918 (796/1345) 1 Intact * Os_TE_336975 Chr4 2154266 2211422 - RETROSAT5_LTR 13878 0.7149 (830/1161) 1 Intact * Os_TE_336927 Chr4 2128414 2128413 - ORSgTEMT00100865 348 0.2335 (307/1315) 0 * * Os_TE_336926 Chr4 2128398 2128397 + ORSgTEMT00500201 140 0.0037 (4/1075) 0 * Os_TE_336925 Os_TE_336925 Chr4 2128387 2128388 - ORSgTEMT00501447 126 0.0023 (3/1322) 0 * Os_TE_336926 Os_TE_336886 Chr4 2117467 2117468 - DS-RICE2N 613 0.0030 (4/1317) 0 * * Os_TE_336885 Chr4 2115407 2115408 - RIRE3_LTR 12054 0.0392 (26/664) 0 * * Os_TE_336846 Chr4 2086357 2086358 - TRUNCATOR 2918 0.0063 (5/795) 0 * * Os_TE_336842 Chr4 2085653 2085652 - COPIA2-LTR_OS 6433 0.0039 (3/778) 0 * * Os_TE_336839 Chr4 2083454 2083455 + SPMLIKE 10989 0.0010 (3/2969) 0 * * Os_TE_336831 Chr4 2069502 2063012 - RIREX_LTR 8828 0.1703 (491/2883) 1 Intact Os_TE_336827 Os_TE_336827 Chr4 2063012 2069502 + RIREX_LTR 8828 0.1818 (504/2772) 1 Intact Os_TE_336831 Os_TE_336825 Chr4 2061634 2061633 + CACTA-B 1103 0.0087 (26/2981) 0 * Os_TE_336824 Os_TE_336824 Chr4 2061633 2061634 - ORSgTETN00200001 10994 0.0064 (19/2973) 0 * Os_TE_336825 Os_TE_336817 Chr4 2059922 2059923 + SPMLIKE 10989 0.0308 (91/2954) 0 * * Os_TE_336813 Chr4 2059667 2059668 + SZ-62LTR 3649 0.0086 (25/2921) 0 * * Os_TE_336804 Chr4 2055567 2055566 - COPIA2-LTR_OS 6433 0.1235 (333/2696) 0 * * Os_TE_336797 Chr4 2052935 2052934 - ORSgTETN00200001 10994 0.2969 (728/2452) 0 * * Os_TE_336784 Chr4 2050445 2050446 - SZ-9LTR 965 0.2451 (713/2909) 0 * Os_TE_336783 Os_TE_336783 Chr4 2050441 2050440 - SZ-9LTR 965 0.2633 (779/2959) 0 * Os_TE_336784 Os_TE_336780 Chr4 2050279 2050280 + SEVERIN-2 1952 0.0004 (1/2658) 0 * * Os_TE_336779 Chr4 2050060 2050059 + SEVERIN-2 1952 0.0019 (5/2684) 0 * Os_TE_336778 Os_TE_336778 Chr4 2050059 2050060 - SEVERIN-2 1952 0.0024 (7/2958) 0 * Os_TE_336779 Os_TE_336777 Chr4 2050004 2050005 - ORSgTETN00200001 10994 0.0010 (3/2958) 0 * Os_TE_336776 Os_TE_336776 Chr4 2050002 2050001 + SPMLIKE 10989 0.0010 (3/2960) 0 * Os_TE_336777 Os_TE_336774 Chr4 2049434 2049433 + RETROSAT4_LTR 13504 0.0015 (4/2663) 0 * * Os_TE_336753 Chr4 2044147 2044146 - SZ-48LTR 3632 0.0506 (127/2511) 0 * * Os_TE_336736 Chr4 2034480 2034481 - ORSiTETNOOT00147 3619 0.0007 (2/2996) 0 * Os_TE_336735 Os_TE_336735 Chr4 2034473 2034472 + ORSiTETNOOT00147 3619 0.0007 (2/2997) 0 * Os_TE_336736 Os_TE_336732 Chr4 2033646 2033647 - INDITTO 263 0.1368 (408/2983) 0 * * Os_TE_336730 Chr4 2033355 2033354 - ORSgTEMT02900114 314 0.0564 (169/2994) 0 * Os_TE_336729 Os_TE_336729 Chr4 2033348 2033349 - ORSgTEMT02900061 318 0.0599 (179/2990) 0 * Os_TE_336730 Os_TE_336728 Chr4 2033311 2033310 + ORSgTEMT01601591 242 0.0013 (4/2981) 0 * * Os_TE_336720 Chr4 2031363 2031362 - STOWAWAY45_OS 266 0.0540 (161/2984) 0 * Os_TE_336719 Os_TE_336719 Chr4 2031360 2031361 + STOWAWAY45_OS 266 0.0542 (162/2988) 0 * Os_TE_336720 Os_TE_336709 Chr4 2028959 2028960 + INDITTO 263 0.0178 (53/2970) 0 * Os_TE_336708 Os_TE_336708 Chr4 2028958 2028957 - INDITTO 263 0.0180 (53/2948) 0 * Os_TE_336709 Os_TE_336704 Chr4 2024819 2024820 + TRUNCATOR 2918 0.0010 (3/2990) 0 * * Os_TE_336703 Chr4 2024032 2024033 - SC-3_LTR 5748 0.0017 (5/2988) 0 * Os_TE_336702 Os_TE_336702 Chr4 2024028 2024027 + ORSiTERTOOT00296 5553 0.0017 (5/2985) 0 * Os_TE_336703 Os_TE_336701 Chr4 2022132 2022133 - SZ-54_LTR 5203 0.0003 (1/2982) 0 * * Os_TE_336693 Chr4 2018057 2018058 - SZ-62LTR 3649 0.8835 (2646/2995) 0 * * Os_TE_336690 Chr4 2017950 2017949 - SZ-67LTR 1540 0.0003 (1/2993) 0 * * Os_TE_336687 Chr4 2017763 2017764 - ENSPM4_OS 11610 0.0379 (113/2981) 0 * * Os_TE_336686 Chr4 2017599 2017598 - TRUNCATOR 2918 0.0003 (1/2989) 0 * * Os_TE_336676 Chr4 2015443 2015442 + ORSiTERTOOT00028 8600 0.0010 (3/2976) 0 * * Os_TE_336579 Chr4 1973740 1973741 + RIREX_LTR 8828 0.0003 (1/2947) 0 * Os_TE_336578 Os_TE_336578 Chr4 1973736 1973735 - RIREX_LTR 8828 0.0003 (1/2948) 0 * Os_TE_336579 Os_TE_336576 Chr4 1973048 1973049 - COPI2_LTR 4733 0.0003 (1/2952) 0 * Os_TE_336575 Os_TE_336575 Chr4 1973044 1973043 + COPI2_LTR 4733 0.0003 (1/2956) 0 * Os_TE_336576 Os_TE_336574 Chr4 1972750 1972751 + SZ-48LTR 3632 0.0004 (1/2821) 0 * * Os_TE_336554 Chr4 1969924 1969925 - SZ-40LTR 2465 0.0013 (4/2988) 0 * Os_TE_336553 Os_TE_336553 Chr4 1969920 1969919 + SZ-40LTR 2465 0.0010 (3/2988) 0 * Os_TE_336554 Os_TE_336550 Chr4 1968842 1968843 + RETROSAT2LTR 12796 0.0395 (118/2991) 0 * Os_TE_336549 Os_TE_336549 Chr4 1968840 1968839 - RETROSAT2LTR 12796 0.0431 (129/2991) 0 * Os_TE_336550 Os_TE_336548 Chr4 1968702 1968703 + ORSiCMCM00100019 2717 0.0010 (3/2992) 0 * Os_TE_336547 Os_TE_336547 Chr4 1968698 1968697 - TRUNCATOR2_LTR 2904 0.0013 (4/2994) 0 * Os_TE_336548 Os_TE_336522 Chr4 1959410 1948450 - ORSgTETN00200001 10994 0.0592 (170/2874) 1 Intact Os_TE_336519 Os_TE_336519 Chr4 1948450 1959410 + SPMLIKE 10989 0.0583 (167/2863) 1 Intact Os_TE_336522 Os_TE_336451 Chr4 1905597 1905596 + TRUNCATOR 2918 0.0010 (3/2970) 0 * * Os_TE_336445 Chr4 1901687 1901686 + TRUNCATOR 2918 0.0017 (5/2949) 0 * Os_TE_336444 Os_TE_336444 Chr4 1901686 1901687 - TRUNCATOR 2918 0.0017 (5/2952) 0 * Os_TE_336445 Os_TE_336425 Chr4 1893529 1893528 - TRUNCATOR 2918 0.0351 (104/2960) 0 * Os_TE_336424 Os_TE_336424 Chr4 1893528 1893529 + TRUNCATOR 2918 0.0361 (107/2965) 0 * Os_TE_336425 Os_TE_336384 Chr4 1881900 1881901 + RIREX_LTR 8828 0.0194 (58/2991) 0 * Os_TE_336383 Os_TE_336383 Chr4 1881896 1881895 - RIREX_LTR 8828 0.0177 (53/2987) 0 * Os_TE_336384 Os_TE_336363 Chr4 1870282 1870283 - SC-3_LTR 5748 0.0084 (25/2987) 0 * Os_TE_336362 Os_TE_336362 Chr4 1870278 1870277 + ORSiTERTOOT00296 5553 0.0090 (27/2987) 0 * Os_TE_336363 Os_TE_336357 Chr4 1868660 1868659 - ORSgTEMT00101174 225 0.0003 (1/2888) 0 * * Os_TE_336345 Chr4 1861126 1861127 + SC-8_LTR 4951 0.0007 (2/2976) 0 * Os_TE_336344 Os_TE_336344 Chr4 1861122 1861121 - SC-8_LTR 4951 0.0003 (1/2983) 0 * Os_TE_336345 Os_TE_336340 Chr4 1857808 1857809 - ORSiTETNOOT00200 3563 0.0671 (198/2952) 0 * * Os_TE_336320 Chr4 1844744 1844745 - ORSgTEMT01400023 211 0.0023 (7/2995) 0 * * Os_TE_336309 Chr4 1841148 1841147 + SZ-37_LTR 12001 0.0020 (6/2976) 0 * * Os_TE_336296 Chr4 1839819 1839818 + TRUNCATOR 2918 0.0013 (4/2967) 0 * Os_TE_336295 Os_TE_336295 Chr4 1839818 1839819 - TRUNCATOR 2918 0.0010 (3/2970) 0 * Os_TE_336296 Os_TE_336294 Chr4 1839627 1839626 - NDNA1TNA_OS 334 0.0003 (1/2996) 0 * * Os_TE_336285 Chr4 1834887 1834886 - ORSgTEMT02000047 197 0.0047 (14/2962) 0 * * Os_TE_336284 Chr4 1834788 1834789 - MuDR4_OS 7610 0.0017 (5/2972) 0 * Os_TE_336283 Os_TE_336283 Chr4 1834782 1834781 - MuDR4_OS 7610 0.0020 (6/2976) 0 * Os_TE_336284 Os_TE_336277 Chr4 1834222 1834223 + RETRO2_LTR 12874 0.1592 (474/2977) 0 * Os_TE_336276 Os_TE_336276 Chr4 1834218 1834217 - RETRO2_LTR 12874 0.1572 (468/2978) 0 * Os_TE_336277 Os_TE_336274 Chr4 1831641 1831642 - OSTONOR1_LTR 6440 0.0007 (2/2984) 0 * * Os_TE_336273 Chr4 1831610 1831609 - AMYLTP 383 0.0017 (5/2983) 0 * * Os_TE_336271 Chr4 1830053 1830054 + EnSpm-13_OS 11171 0.0003 (1/2991) 0 * Os_TE_336270 Os_TE_336270 Chr4 1830051 1830050 - EnSpm-13_OS 11171 0.0003 (1/2987) 0 * Os_TE_336271 Os_TE_336269 Chr4 1829326 1829327 + SPMLIKE 10989 0.0014 (4/2904) 0 * Os_TE_336268 Os_TE_336268 Chr4 1829324 1829323 - ORSgTETN00200001 10994 0.0010 (3/2906) 0 * Os_TE_336269 Os_TE_336261 Chr4 1827560 1827559 - TRUNCATOR 2918 0.0131 (39/2978) 0 * Os_TE_336260 Os_TE_336260 Chr4 1827559 1827560 + TRUNCATOR 2918 0.0137 (41/2984) 0 * Os_TE_336261 Os_TE_336258 Chr4 1826211 1826210 + CACTA-B 1103 0.0003 (1/2985) 0 * Os_TE_336257 Os_TE_336257 Chr4 1826207 1826208 + ORSgTETN00200005 1121 0.0003 (1/2989) 0 * Os_TE_336258 Os_TE_336256 Chr4 1825343 1825344 - SZ-62LTR 3649 0.0191 (57/2979) 0 * Os_TE_336255 Os_TE_336255 Chr4 1825339 1825338 + SZ-62LTR 3649 0.0188 (56/2973) 0 * Os_TE_336256 Os_TE_336251 Chr4 1824121 1824122 - COPI2_LTR 4733 0.0020 (6/2984) 0 * Os_TE_336250 Os_TE_336250 Chr4 1824117 1824116 + COPI2_LTR 4733 0.0020 (6/2980) 0 * Os_TE_336251 Os_TE_336248 Chr4 1822385 1822386 + ORSgTEMT00901422 244 0.7972 (2386/2993) 0 * Os_TE_336247 Os_TE_336247 Chr4 1822384 1822383 - ORSgTEMT00900099 250 0.7925 (2361/2979) 0 * Os_TE_336248 Os_TE_336236 Chr4 1819758 1819757 + SPMLIKE 10989 0.0003 (1/2979) 0 * * Os_TE_336232 Chr4 1818891 1818892 - ORSgTETN00200001 10994 0.0017 (5/2998) 0 * Os_TE_336231 Os_TE_336231 Chr4 1818889 1818888 + SPMLIKE 10989 0.0013 (4/2998) 0 * Os_TE_336232 Os_TE_336222 Chr4 1816824 1816825 + TRUNCATOR 2918 0.1012 (302/2985) 0 * Os_TE_336221 Os_TE_336221 Chr4 1816818 1816817 - ORSiTERT00200154 9386 0.1005 (300/2984) 0 * Os_TE_336222 Os_TE_336215 Chr4 1812810 1812811 - MPING 430 0.0003 (1/2989) 0 * Os_TE_336214 Os_TE_336214 Chr4 1812808 1812807 + MPING 430 0.0003 (1/2988) 0 * Os_TE_336215 Os_TE_336213 Chr4 1812107 1812106 + SZ-54C_LTR 5249 0.0003 (1/2974) 0 * * Os_TE_336210 Chr4 1810212 1810213 + SZ-63_LTR 9602 0.4849 (1396/2879) 0 * Os_TE_336209 Os_TE_336209 Chr4 1810208 1810207 - SZ-63_LTR 9602 0.0128 (20/1566) 0 * Os_TE_336210 Os_TE_336208 Chr4 1810185 1810184 - ORSgTEMT00300008 396 0.0038 (6/1565) 0 * * Os_TE_336207 Chr4 1809658 1809659 - ORSgTETNOOT01706 255 0.0005 (1/2134) 0 * * Os_TE_336206 Chr4 1809636 1809637 + ORSgTETNOOT00309 256 0.4901 (1384/2824) 0 * * Os_TE_336204 Chr4 1809365 1809366 - TRUNCATOR2_LTR 2904 0.0158 (46/2907) 0 * * Os_TE_336200 Chr4 1807076 1807077 + SZ-67LTR 1540 0.0013 (2/1581) 0 * Os_TE_336199 Os_TE_336199 Chr4 1807072 1807071 - SZ-67LTR 1540 0.0013 (2/1580) 0 * Os_TE_336200 Os_TE_336159 Chr4 1793605 1793606 + RIREX_LTR 8828 0.0008 (1/1267) 0 * * Os_TE_336157 Chr4 1793002 1793003 - STOWAWAY18_OS 216 0.5413 (1435/2651) 0 * * Os_TE_336156 Chr4 1792842 1792843 + ORSiTERTOOT00318 4859 0.0004 (1/2715) 0 * * Os_TE_336154 Chr4 1791536 1791535 + SC9A_LTR 5300 0.0998 (141/1413) 0 * * Os_TE_336153 Chr4 1791459 1791460 - RIRE2_LTR 11306 0.0016 (2/1250) 0 * Os_TE_336152 Os_TE_336152 Chr4 1791455 1791454 - ORSgTERT00201216 11284 0.0016 (2/1254) 0 * Os_TE_336153 Os_TE_336147 Chr4 1788669 1788670 - ORSgTETN00200001 10994 0.0318 (39/1226) 0 * Os_TE_336146 Os_TE_336146 Chr4 1788667 1788666 + SPMLIKE 10989 0.0423 (53/1254) 0 * Os_TE_336147 Os_TE_336145 Chr4 1788635 1788636 - RETROSAT2LTR 12796 0.0587 (73/1244) 0 * * Os_TE_336142 Chr4 1787753 1787754 + SZ-40LTR 2465 0.2593 (405/1562) 0 * * Os_TE_336132 Chr4 1786208 1786209 + RIREX_LTR 8828 0.0032 (5/1546) 0 * * Os_TE_336128 Chr4 1784243 1784242 - ORSiTEMT01300001 950 0.0631 (99/1568) 0 * * Os_TE_336117 Chr4 1783385 1783386 + MERMITE18C 1473 0.4941 (1468/2971) 0 * * Os_TE_336116 Chr4 1783173 1783174 + COPI2_LTR 4733 0.0003 (1/2897) 0 * Os_TE_336115 Os_TE_336115 Chr4 1783169 1783168 - COPI2_LTR 4733 0.0003 (1/2964) 0 * Os_TE_336116 Os_TE_336113 Chr4 1782689 1782313 - TYPEU1 380 0.6345 (1656/2610) 1 Intact Os_TE_336111 Os_TE_336111 Chr4 1782311 1782689 + TYPEU2 382 0.6333 (1613/2547) 1 Intact Os_TE_336113 Os_TE_336109 Chr4 1781251 1781252 + RIREX_LTR 8828 0.0234 (69/2951) 0 * * Os_TE_336106 Chr4 1779747 1779746 - HATOS1 3488 0.1233 (364/2952) 0 * * Os_TE_336105 Chr4 1779708 1779707 + STOWAWAY51_OS 246 0.0026 (7/2740) 0 * * Os_TE_336100 Chr4 1778678 1778677 + COPIA2-LTR_OS 6433 0.0035 (10/2893) 0 * * Os_TE_336091 Chr4 1771370 1771371 + MDR2 6967 0.0022 (6/2770) 0 * Os_TE_336090 Os_TE_336090 Chr4 1771362 1771361 - MDR2 6967 0.0024 (7/2877) 0 * Os_TE_336091 Os_TE_336089 Chr4 1771216 1770978 - TREP215 239 0.5102 (1378/2701) 1 Intact Os_TE_336086 Os_TE_336086 Chr4 1770978 1771216 + ORSgTEMT01602580 283 0.4768 (1368/2869) 1 Intact Os_TE_336089 Os_TE_336083 Chr4 1770808 1770809 + STOWAWAY13_OS 251 0.0470 (126/2679) 0 * * Os_TE_336077 Chr4 1769349 1769350 + ORSgTEMT01601525 239 0.0015 (2/1362) 0 * * Os_TE_336068 Chr4 1766965 1766966 + ORSgTEMT01602181 239 0.0020 (6/2973) 0 * * Os_TE_336055 Chr4 1765225 1765224 + ORSgTERTOOT00009 12852 0.0200 (47/2346) 0 * * Os_TE_336049 Chr4 1764267 1764268 + SZ-40LTR 2465 0.0314 (92/2927) 0 * Os_TE_336048 Os_TE_336048 Chr4 1764263 1764262 - SZ-40LTR 2465 0.0309 (92/2982) 0 * Os_TE_336049 Os_TE_336047 Chr4 1764053 1764054 - ORSiTERTOOT00385 6000 0.0020 (6/2947) 0 * * Os_TE_336044 Chr4 1762379 1762380 + ORSiCMCM00100019 2717 0.0666 (195/2930) 0 * Os_TE_336043 Os_TE_336043 Chr4 1762375 1762374 - TRUNCATOR2_LTR 2904 0.0701 (201/2867) 0 * Os_TE_336044 Os_TE_336042 Chr4 1762309 1762310 + ORSiTERTOOT00027 10853 0.0007 (2/2929) 0 * Os_TE_336041 Os_TE_336041 Chr4 1762305 1762304 - RIRE3A_LTR 10580 0.0007 (2/2930) 0 * Os_TE_336042 Os_TE_336039 Chr4 1758610 1758611 + ORSiTERTOOT00296 5553 0.0003 (1/2997) 0 * Os_TE_336038 Os_TE_336038 Chr4 1758606 1758605 - SC-3_LTR 5748 0.0003 (1/2997) 0 * Os_TE_336039 Os_TE_336033 Chr4 1753591 1753592 + SPMLIKE 10989 0.2320 (679/2927) 0 * Os_TE_336032 Os_TE_336032 Chr4 1753589 1753588 - ORSgTETN00200001 10994 0.2301 (673/2925) 0 * Os_TE_336033 Os_TE_336030 Chr4 1753347 1753346 - RIRE2_LTR 11306 0.0013 (4/2982) 0 * * Os_TE_336028 Chr4 1753037 1753038 + OSTE21 1271 0.0154 (46/2980) 0 * * Os_TE_336027 Chr4 1750944 1750945 - SZ-62LTR 3649 0.0003 (1/2982) 0 * * Os_TE_336011 Chr4 1747320 1750551 + ORSiTERTOOT00028 8600 0.0689 (205/2974) 1 Intact * Os_TE_336008 Chr4 1746823 1746822 + RETRO2_LTR 12874 0.0314 (92/2929) 0 * * Os_TE_336004 Chr4 1745618 1745619 - ORSgTETN00200001 10994 0.1908 (372/1950) 0 * * Os_TE_335997 Chr4 1743446 1743447 - ORSgTETN00200001 10994 0.0358 (81/2261) 0 * Os_TE_335996 Os_TE_335996 Chr4 1743444 1743443 + SPMLIKE 10989 0.0471 (140/2970) 0 * Os_TE_335997 Os_TE_335995 Chr4 1743413 1743260 - ORSgTEMT01700507 154 0.6225 (1606/2580) 1 Intact Os_TE_335993 Os_TE_335993 Chr4 1743260 1743406 - ORSgTEMT01700376 152 0.6726 (2003/2978) 1 Intact Os_TE_335995 Os_TE_335992 Chr4 1743050 1743051 - SZ-55_LTR 10318 0.0025 (5/2013) 0 * Os_TE_335991 Os_TE_335991 Chr4 1743046 1743045 + SZ-55_LTR 10318 0.0035 (7/2019) 0 * Os_TE_335992 Os_TE_335990 Chr4 1742889 1742890 - ORSgTERT00201216 11284 0.0015 (3/2026) 0 * Os_TE_335989 Os_TE_335989 Chr4 1742885 1742884 - RIRE2_LTR 11306 0.0005 (1/2023) 0 * Os_TE_335990 Os_TE_335987 Chr4 1742760 1742759 + RIRE2_LTR 11306 0.0005 (1/2021) 0 * * Os_TE_335984 Chr4 1742303 1742304 - RIREX_LTR 8828 0.0005 (1/2045) 0 * Os_TE_335983 Os_TE_335983 Chr4 1742299 1742298 + RIREX_LTR 8828 0.0005 (1/2042) 0 * Os_TE_335984 Os_TE_335982 Chr4 1741944 1741943 - HATOS1 3488 0.1129 (229/2028) 0 * * Os_TE_335977 Chr4 1741641 1741640 + COPIA2-LTR_OS 6433 0.0025 (5/2025) 0 * * Os_TE_335975 Chr4 1741493 1741492 - ORSgTEMT01701104 154 0.0025 (5/2033) 0 * Os_TE_335974 Os_TE_335974 Chr4 1741490 1741491 + ORSgTEMT01701104 154 0.0025 (5/2034) 0 * Os_TE_335975 Os_TE_335973 Chr4 1740798 1740797 + TRUNCATOR 2918 0.5029 (1488/2959) 0 * * Os_TE_335970 Chr4 1738945 1738946 + CACTA-G1 797 0.0005 (1/2046) 0 * * Os_TE_335968 Chr4 1738416 1738417 - OSTE9 421 0.0892 (199/2230) 0 * * Os_TE_335942 Chr4 1731929 1731930 + SINE1OS 127 0.6070 (1208/1990) 0 * Os_TE_335941 Os_TE_335941 Chr4 1731927 1731926 - SINE1R5_OS 121 0.5945 (1176/1978) 0 * Os_TE_335942 Os_TE_335923 Chr4 1723448 1723449 + CACTA-H 1152 0.0005 (1/2029) 0 * * Os_TE_335914 Chr4 1721498 1721499 + CACTA-B 1103 0.5352 (1552/2900) 0 * * Os_TE_335911 Chr4 1717278 1717277 - SZ-54_LTR 5203 0.0003 (1/2995) 0 * * Os_TE_335910 Chr4 1716832 1716833 + ORSgTEMT03400012 238 0.5414 (1597/2950) 0 * Os_TE_335909 Os_TE_335909 Chr4 1716827 1716826 - TAMI2 254 0.5416 (1600/2954) 0 * Os_TE_335910 Os_TE_335906 Chr4 1715928 1716083 - ORSgTEMT01701348 105 0.6006 (1170/1948) 1 Intact * Os_TE_335899 Chr4 1714263 1714599 - ORSgTEMT00100406 349 0.4504 (1338/2971) 1 Intact * Os_TE_335894 Chr4 1713202 1713201 + ORSgTEMT01400032 215 0.1721 (498/2894) 0 * Os_TE_335893 Os_TE_335893 Chr4 1713197 1713198 - ORSgTEMT01400033 210 0.1704 (505/2963) 0 * Os_TE_335894 Os_TE_335892 Chr4 1713032 1713031 + ORSgTEMT01701547 160 0.0128 (38/2960) 0 * Os_TE_335891 Os_TE_335891 Chr4 1713029 1713030 + ORSgTEMT01700741 196 0.0148 (44/2963) 0 * Os_TE_335892 Os_TE_335890 Chr4 1712979 1712978 + STOWAWAY51_OS 246 0.0003 (1/2969) 0 * * Os_TE_335889 Chr4 1712976 1712977 - RIRE3A_LTR 10580 0.0419 (124/2961) 0 * Os_TE_335888 Os_TE_335888 Chr4 1712972 1712971 + RIRE3A_LTR 10580 0.0401 (119/2971) 0 * Os_TE_335889 Os_TE_335885 Chr4 1712484 1712485 + CACTA-H 1152 0.0562 (81/1441) 0 * * Os_TE_335884 Chr4 1712449 1712448 + ORSgTETNOOT01275 140 0.0942 (126/1338) 0 * Os_TE_335883 Os_TE_335883 Chr4 1712448 1712449 + ORSgTEMT00502327 143 0.4602 (1352/2938) 0 * Os_TE_335884 Os_TE_335871 Chr4 1710415 1710416 + MPING 430 0.0069 (6/864) 0 * Os_TE_335870 Os_TE_335870 Chr4 1710413 1710412 - MPING 430 0.0019 (5/2699) 0 * Os_TE_335871 Os_TE_335869 Chr4 1710328 1710327 + GAIJIN 147 0.1415 (381/2693) 0 * Os_TE_335868 Os_TE_335868 Chr4 1710327 1710328 - ORSgTEMT00501255 146 0.0012 (1/869) 0 * Os_TE_335869 Os_TE_335866 Chr4 1709179 1709180 - ORSiTERT00100080 6173 0.0640 (165/2577) 0 * * Os_TE_335865 Chr4 1708893 1708894 + MUDRN1_OS 764 0.0027 (6/2222) 0 * * Os_TE_335863 Chr4 1704308 1704057 - ORSgTEMT00901300 218 0.7614 (852/1119) 1 Intact Os_TE_335861 Os_TE_335861 Chr4 1704057 1704308 - ORSgTEMT00900099 250 0.7634 (855/1120) 1 Intact Os_TE_335863 Os_TE_335860 Chr4 1704027 1702829 - CACTA-P 1150 0.7690 (849/1104) 1 Intact Os_TE_335852 Os_TE_335852 Chr4 1702829 1704027 + CACTA-P 1150 0.8454 (853/1009) 1 Intact Os_TE_335860 Os_TE_335851 Chr4 1702579 1702580 + SPMLIKE 10989 0.0782 (131/1675) 0 * Os_TE_335850 Os_TE_335850 Chr4 1702577 1702576 - ORSgTETN00200001 10994 0.0663 (107/1613) 0 * Os_TE_335851 Os_TE_335847 Chr4 1702308 1702309 - ORSgTEMT01601834 234 0.2502 (384/1535) 0 * * Os_TE_335845 Chr4 1700566 1700567 + SZ-62LTR 3649 0.0018 (2/1108) 0 * Os_TE_335844 Os_TE_335844 Chr4 1700562 1700561 - SZ-62LTR 3649 0.0007 (1/1509) 0 * Os_TE_335845 Os_TE_335841 Chr4 1700445 1700199 - STOWAWAY36_OS 268 0.3938 (645/1638) 1 Intact * Os_TE_335804 Chr4 1676065 1676066 + ORSiTERTOOT00027 10853 0.0031 (2/645) 0 * * Os_TE_335792 Chr4 1659196 1659197 - ORSgTETN00200001 10994 0.0015 (1/670) 0 * * Os_TE_335762 Chr4 1645923 1645922 - ORSgTERT00201216 11284 0.0022 (3/1395) 0 * * Os_TE_335760 Chr4 1645835 1645834 - ORSgTEMT00500675 140 0.6315 (1059/1677) 0 * * Os_TE_335733 Chr4 1632362 1643047 + SPMLIKE 10989 0.4654 (450/967) 1 Intact * Os_TE_335732 Chr4 1632233 1615098 + SPMLIKE 10989 0.8780 (547/623) 1 Intact * Os_TE_335686 Chr4 1613453 1613194 + STOWAWAY10_OS 259 0.5715 (683/1195) 1 Intact * Os_TE_335685 Chr4 1613136 1613135 - MuDR3_OS 8604 0.0025 (3/1213) 0 * * Os_TE_335684 Chr4 1612900 1612901 + F770 284 0.0008 (1/1213) 0 * * Os_TE_335677 Chr4 1612218 1612219 - RIRE2_LTR 11306 0.0041 (4/984) -1 * * Os_TE_335670 Chr4 1611270 1611271 - RIREX_LTR 8828 0.3309 (406/1227) 0 * * Os_TE_335598 Chr4 1576770 1584909 - ENSPM_OS 9843 0.3117 (240/770) 1 Intact * Os_TE_335537 Chr4 1541864 1544947 - TRUNCATOR2_LTR 2904 0.5894 (257/436) 1 Intact * Os_TE_335454 Chr4 1496258 1496259 - ORSgTERT00201216 11284 0.0972 (42/432) 0 * Os_TE_335453 Os_TE_335453 Chr4 1496254 1496253 - RIRE2_LTR 11306 0.0937 (40/427) 0 * Os_TE_335454 Os_TE_335452 Chr4 1495564 1495565 - TRUNCATOR2_LTR 2904 0.0041 (2/486) 0 * Os_TE_335451 Os_TE_335451 Chr4 1495560 1495559 + ORSiCMCM00100019 2717 0.0049 (2/411) 0 * Os_TE_335452 Os_TE_335448 Chr4 1495196 1495456 - STOWAWAY48_OS 261 0.6285 (423/673) 1 Intact * Os_TE_335335 Chr4 1450595 1450596 - TELIA 141 0.0007 (1/1376) 0 * Os_TE_335334 Os_TE_335334 Chr4 1450589 1450588 + TELIA 141 0.0008 (1/1289) 0 * Os_TE_335335 Os_TE_335333 Chr4 1450544 1450543 - SEVERIN-2 1952 0.3483 (496/1424) 0 * * Os_TE_335324 Chr4 1444857 1444858 - RIRE2_LTR 11306 0.0018 (5/2806) 0 * Os_TE_335323 Os_TE_335323 Chr4 1444853 1444852 + RIRE2_LTR 11306 0.0014 (4/2869) 0 * Os_TE_335324 Os_TE_335322 Chr4 1443915 1443916 - RIREX_LTR 8828 0.0003 (1/2985) 0 * Os_TE_335321 Os_TE_335321 Chr4 1443911 1443910 + RIREX_LTR 8828 0.0003 (1/2946) 0 * Os_TE_335322 Os_TE_335310 Chr4 1439728 1439727 - TRUNCATOR 2918 0.0037 (1/267) 0 * * Os_TE_335252 Chr4 1411325 1411324 + ENSPM5_OS 9581 0.2568 (66/257) 0 * * Os_TE_335245 Chr4 1410049 1410048 + SPMLIKE 10989 0.0017 (5/2911) 0 * * Os_TE_335243 Chr4 1408465 1408466 - RIREX_LTR 8828 0.3150 (80/254) 0 * * Os_TE_335239 Chr4 1407935 1407934 + MDM2 312 0.0037 (1/267) 0 * * Os_TE_335151 Chr4 1369265 1369264 + SPMLIKE 10989 0.0004 (1/2610) 0 * * Os_TE_335137 Chr4 1363709 1363708 - STOWAWAY51_OS 246 0.0197 (6/304) 0 * Os_TE_335136 Os_TE_335136 Chr4 1363703 1363704 + STOWAWAY51_OS 246 0.0021 (6/2882) 0 * Os_TE_335137 Os_TE_335135 Chr4 1361503 1361504 + RIREX_LTR 8828 0.0007 (2/2993) 0 * Os_TE_335134 Os_TE_335134 Chr4 1361499 1361498 - RIREX_LTR 8828 0.0007 (2/2993) 0 * Os_TE_335135 Os_TE_335133 Chr4 1358140 1356809 + ORSgTEMT01700923 149 0.0832 (231/2775) 1 Intact * Os_TE_335061 Chr4 1332870 1332869 - RETRO1_LTR 8314 0.0008 (2/2632) 0 * * Os_TE_335056 Chr4 1332249 1332248 - TRUNCATOR2_LTR 2904 0.0008 (2/2637) 0 * * Os_TE_335055 Chr4 1329321 1329322 - SZ-67LTR 1540 0.0004 (1/2657) 0 * * Os_TE_335054 Chr4 1328933 1328932 - RIRE2_LTR 11306 0.0004 (1/2643) 0 * * Os_TE_335053 Chr4 1328756 1328757 + OSTONOR1_LTR 6440 0.0052 (14/2676) 0 * Os_TE_335052 Os_TE_335052 Chr4 1328752 1328751 - ORSiTERT00100062 5674 0.0090 (12/1334) 0 * Os_TE_335053 Os_TE_335047 Chr4 1324498 1324499 + RIREX_LTR 8828 0.0041 (5/1232) 0 * Os_TE_335046 Os_TE_335046 Chr4 1324494 1324493 - RIREX_LTR 8828 0.0039 (5/1270) 0 * Os_TE_335047 Os_TE_335045 Chr4 1322553 1322552 - TNR8-21 428 0.6708 (876/1306) 0 * * Os_TE_335044 Chr4 1322443 1322442 - ORSgTEMT04600037 279 0.6656 (866/1301) 0 * * Os_TE_335040 Chr4 1321797 1321649 + ORSgTEMT00502025 149 0.3397 (429/1263) 1 Intact Os_TE_335039 Os_TE_335039 Chr4 1321645 1321795 - ORSgTEMT00501334 156 0.3321 (440/1325) 1 Intact Os_TE_335040 Os_TE_335038 Chr4 1321001 1321002 - OSMUD1 5028 0.0054 (7/1308) 0 * * Os_TE_335037 Chr4 1320488 1320489 + MuDR4_OS 7610 0.1411 (165/1169) 0 * * Os_TE_335022 Chr4 1310161 1309802 - ORSgTEMT03000007 372 0.4878 (219/449) 1 Intact * Os_TE_334976 Chr4 1286767 1286768 - ENSPM_OS 9843 0.1043 (111/1064) 0 * * Os_TE_334973 Chr4 1285083 1285082 - SZ-62LTR 3649 0.0015 (4/2665) 0 * * Os_TE_334969 Chr4 1281282 1281283 + STOWAWAY51_OS 246 0.0055 (9/1635) 0 * * Os_TE_334968 Chr4 1280916 1280915 + SINE03_OS 360 0.0018 (3/1659) 0 * * Os_TE_334960 Chr4 1279666 1279665 - SEVERIN-2 1952 0.0012 (2/1683) 0 * * Os_TE_334959 Chr4 1279546 1279547 - ENSPM_OS 9843 0.0060 (10/1677) 0 * Os_TE_334958 Os_TE_334958 Chr4 1279544 1279543 + ENSPM_OS 9843 0.0072 (12/1672) 0 * Os_TE_334959 Os_TE_334957 Chr4 1279292 1277509 + RPO_OS 1983 0.4845 (219/452) 1 Intact * Os_TE_334930 Chr4 1270625 1270385 + ORSgTETNOOT00908 242 0.7655 (173/226) 1 Intact Os_TE_334929 Os_TE_334929 Chr4 1270385 1270625 - ORSgTETNOOT00908 242 0.7725 (180/233) 1 Intact Os_TE_334930 Os_TE_334905 Chr4 1255670 1255671 + ORSgTETN00200005 1121 0.0067 (8/1186) 0 * * Os_TE_334897 Chr4 1252381 1252380 - ORSgTEMT01602413 239 0.6076 (1632/2686) 0 * Os_TE_334896 Os_TE_334896 Chr4 1252378 1252379 - ORSgTEMT01602413 239 0.6190 (1714/2769) 0 * Os_TE_334897 Os_TE_334892 Chr4 1249218 1249217 - ORSgTEMT00900741 219 0.1653 (490/2965) 0 * * Os_TE_334890 Chr4 1249043 1249042 + ORSgTEMT01601122 212 0.0012 (3/2540) 0 * * Os_TE_334886 Chr4 1248756 1248757 + ORSiTERTOOT00398 5651 0.0658 (194/2948) 0 * * Os_TE_334884 Chr4 1248416 1248417 - ORSgTEMT01602413 239 0.0024 (7/2955) 0 * * Os_TE_334880 Chr4 1248091 1247860 + ORSgTEMT01601426 233 0.8406 (2384/2836) 1 Intact Os_TE_334879 Os_TE_334879 Chr4 1247860 1248098 - ORSgTEMT01602413 239 0.8351 (2158/2584) 1 Intact Os_TE_334880 Os_TE_334878 Chr4 1247737 1247738 - MDR2 6967 0.0018 (4/2263) 0 * Os_TE_334877 Os_TE_334877 Chr4 1247729 1247728 + MDR2 6967 0.0020 (5/2511) 0 * Os_TE_334878 Os_TE_334875 Chr4 1246829 1246828 + ORSgTEMT01601525 239 0.1885 (494/2620) -1 * Os_TE_334874 Os_TE_334874 Chr4 1246820 1246821 - ORSgTEMT01602413 239 0.1835 (474/2583) -1 * Os_TE_334875 Os_TE_334873 Chr4 1246522 1235330 + ENSPM4_OS 11610 0.0401 (113/2815) -1 Intact * Os_TE_334869 Chr4 1233737 1233736 - ORSgTEMT01600639 228 0.1717 (509/2965) 0 * * Os_TE_334867 Chr4 1233571 1233572 + OSTE33 1012 0.0004 (1/2571) 0 * * Os_TE_334865 Chr4 1233549 1233548 - OSTE33 1012 0.0914 (255/2791) 0 * * Os_TE_334864 Chr4 1233189 1233188 + OSTE15 1168 0.0087 (26/2988) 0 * Os_TE_334863 Os_TE_334863 Chr4 1233185 1233186 + OSMU5 4881 0.0074 (22/2992) 0 * Os_TE_334864 Os_TE_334862 Chr4 1232869 1232870 - RIRE5-LTR_OS 6427 0.1759 (525/2985) 0 * Os_TE_334861 Os_TE_334861 Chr4 1232862 1232861 + RIRE5-LTR_OS 6427 0.1706 (508/2978) 0 * Os_TE_334862 Os_TE_334860 Chr4 1232849 1232850 + ORSgTEMT00600120 364 0.0003 (1/2985) 0 * Os_TE_334859 Os_TE_334859 Chr4 1232847 1232846 - CASTAWAY 364 0.0004 (1/2740) 0 * Os_TE_334860 Os_TE_334851 Chr4 1229880 1229879 + RETROSAT4_LTR 13504 0.0007 (2/2929) 0 * * Os_TE_334850 Chr4 1229172 1229173 - OSTE14 885 0.0468 (140/2989) 0 * Os_TE_334849 Os_TE_334849 Chr4 1229170 1229169 - OSTE14 885 0.0456 (136/2982) 0 * Os_TE_334850 Os_TE_334836 Chr4 1224992 1221498 - JOUZHENA 607 0.4638 (1320/2846) 1 Intact Os_TE_334835 Os_TE_334835 Chr4 1221498 1224992 + JOUZHENA 607 0.4593 (1367/2976) 1 Intact Os_TE_334836 Os_TE_334823 Chr4 1215098 1215099 - ENSPM4_OS 11610 0.0134 (40/2996) 0 * * Os_TE_334816 Chr4 1210615 1210616 + SPMLIKE 10989 0.0022 (6/2763) 0 * Os_TE_334815 Os_TE_334815 Chr4 1210613 1210612 - ORSgTETN00200001 10994 0.0011 (3/2803) 0 * Os_TE_334816 Os_TE_334793 Chr4 1203378 1203377 - ORSgTEMT01601432 239 0.0010 (3/2963) 0 * Os_TE_334792 Os_TE_334792 Chr4 1203375 1203376 + ORSgTEMT01602181 239 0.0010 (3/2971) 0 * Os_TE_334793 Os_TE_334790 Chr4 1202555 1202556 + RIREX_LTR 8828 0.0369 (110/2983) 0 * Os_TE_334789 Os_TE_334789 Chr4 1202551 1202550 - RIREX_LTR 8828 0.0362 (108/2982) 0 * Os_TE_334790 Os_TE_334787 Chr4 1200950 1200951 + MPING 430 0.0003 (1/2975) 0 * Os_TE_334786 Os_TE_334786 Chr4 1200948 1200947 - MPING 430 0.0003 (1/2979) 0 * Os_TE_334787 Os_TE_334778 Chr4 1197910 1191468 - COPIA2-LTR_OS 6433 0.0857 (254/2965) 1 Intact Os_TE_334776 Os_TE_334776 Chr4 1191468 1197910 + COPIA2-LTR_OS 6433 0.0902 (269/2982) 1 Intact Os_TE_334778 Os_TE_334765 Chr4 1188571 1178922 - ENSPM6_OS 9815 0.0557 (164/2943) 1 Intact Os_TE_334764 Os_TE_334764 Chr4 1178816 1188571 + ENSPM6_OS 9815 0.0523 (154/2943) 1 Intact Os_TE_334765 Os_TE_334762 Chr4 1178355 1178356 + RETRO2_LTR 12874 0.3981 (1156/2904) 0 * Os_TE_334761 Os_TE_334761 Chr4 1178351 1178350 - RETRO2_LTR 12874 0.4010 (1176/2933) 0 * Os_TE_334762 Os_TE_334750 Chr4 1177036 1177035 + ORSgTEMT01602181 239 0.0003 (1/2966) 0 * Os_TE_334749 Os_TE_334749 Chr4 1177033 1177034 + ORSgTEMT01602181 239 0.0003 (1/2889) 0 * Os_TE_334750 Os_TE_334744 Chr4 1172400 1176553 + RIRE3A_LTR 10580 0.0537 (159/2960) 1 Intact * Os_TE_334742 Chr4 1172332 1172331 + AMYLTP 383 0.0249 (72/2896) 0 * * Os_TE_334741 Chr4 1172321 1172320 - RIREX_LTR 8828 0.0067 (19/2842) 0 * * Os_TE_334738 Chr4 1171730 1171729 + MPING 430 0.0008 (2/2442) 0 * * Os_TE_334737 Chr4 1170198 1166794 - TRUNCATOR2_LTR 2904 0.1836 (550/2995) 1 Intact Os_TE_334727 Os_TE_334727 Chr4 1166794 1170198 + ORSiTERTOOT00028 8600 0.1796 (537/2990) 1 Intact Os_TE_334737 Os_TE_334725 Chr4 1164917 1164916 + RETRO2_LTR 12874 0.0852 (255/2994) 0 * * Os_TE_334723 Chr4 1164335 1164334 - SZ-54A_LTR 5249 0.0003 (1/2992) 0 * * Os_TE_334722 Chr4 1164295 1164296 - SZ-67LTR 1540 0.0074 (22/2993) 0 * * Os_TE_334720 Chr4 1163769 1163768 - Cassandra_OS-LTR 764 0.0133 (32/2401) 0 * * Os_TE_334719 Chr4 1163294 1163295 + COPIA2-LTR_OS 6433 0.0003 (1/2957) 0 * Os_TE_334718 Os_TE_334718 Chr4 1163290 1163289 - COPIA2-LTR_OS 6433 0.0007 (2/2959) 0 * Os_TE_334719 Os_TE_334713 Chr4 1161840 1161841 + RIREX_LTR 8828 0.0222 (65/2933) 0 * * Os_TE_334701 Chr4 1157979 1157980 - MUDRN1_OS 764 0.0061 (18/2947) 0 * Os_TE_334700 Os_TE_334700 Chr4 1157971 1157970 + MUDRN1_OS 764 0.0068 (20/2949) 0 * Os_TE_334701 Os_TE_334697 Chr4 1155721 1155722 - COPIA2-LTR_OS 6433 0.5420 (1586/2926) 0 * * Os_TE_334693 Chr4 1154992 1154993 + TWIFBIG 3567 0.0223 (65/2917) 0 * Os_TE_334692 Os_TE_334692 Chr4 1154985 1154984 - ORSiTETNOOT00200 3563 0.0226 (66/2925) 0 * Os_TE_334693 Os_TE_334687 Chr4 1154593 1154592 - ORSgTEMT00700002 381 0.0003 (1/2900) 0 * Os_TE_334686 Os_TE_334686 Chr4 1154587 1154588 - ORSgTEMT00700002 381 0.0003 (1/2913) 0 * Os_TE_334687 Os_TE_334685 Chr4 1153999 1154000 + ORSiTEMT01000008 242 0.0003 (1/2968) 0 * * Os_TE_334666 Chr4 1148291 1148292 - RETRO2_LTR 12874 0.0003 (1/2991) 0 * * Os_TE_334662 Chr4 1147028 1147027 + MUDRN1_OS 764 0.0576 (169/2932) 0 * * Os_TE_334652 Chr4 1143496 1140109 - SZ-40LTR 2465 0.5298 (1564/2952) 1 Intact Os_TE_334651 Os_TE_334651 Chr4 1140109 1143496 + SZ-40LTR 2465 0.5164 (1493/2891) 1 Intact Os_TE_334652 Os_TE_334638 Chr4 1126590 1126591 - RIRE2_LTR 11306 0.0030 (9/2986) 0 * Os_TE_334637 Os_TE_334637 Chr4 1126586 1126585 + RIRE2_LTR 11306 0.0033 (10/2987) 0 * Os_TE_334638 Os_TE_334631 Chr4 1125043 1125044 - ORSiTETNOOT00200 3563 0.0418 (124/2965) 0 * Os_TE_334630 Os_TE_334630 Chr4 1125036 1125035 + TWIFBIG 3567 0.0398 (118/2966) 0 * Os_TE_334631 Os_TE_334627 Chr4 1121069 1121068 - ORSgTEMT00901723 248 0.0003 (1/2985) 0 * * Os_TE_334621 Chr4 1114857 1114858 + OSTONOR1_LTR 6440 0.0070 (21/2988) 0 * * Os_TE_334615 Chr4 1110442 1110443 + ORSgTEMT00300122 416 0.1009 (281/2785) 0 * * Os_TE_334589 Chr4 1099293 1099294 - CLOUD-4 520 0.3011 (859/2853) 0 * * Os_TE_334586 Chr4 1099009 1099010 - ORSgTEMT00600524 364 0.3092 (879/2843) 0 * Os_TE_334585 Os_TE_334585 Chr4 1099008 1099007 + ORSgTEMT00600272 361 0.2957 (866/2929) 0 * Os_TE_334586 Os_TE_334582 Chr4 1094204 1094203 + STOWAWAY51_OS 246 0.0238 (54/2268) 0 * Os_TE_334581 Os_TE_334581 Chr4 1094198 1094199 - STOWAWAY51_OS 246 0.0170 (50/2943) 0 * Os_TE_334582 Os_TE_334579 Chr4 1093283 1093282 - TRUNCATOR2_LTR 2904 0.0034 (10/2960) 0 * * Os_TE_334523 Chr4 1079757 1079758 + TWIFB1 3737 0.0003 (1/2968) 0 * * Os_TE_334513 Chr4 1076538 1077501 - HARB-N1_OS 2589 0.1373 (410/2987) 1 Intact * Os_TE_334511 Chr4 1073934 1073935 + NDNA1TNA_OS 334 0.0034 (10/2963) 0 * Os_TE_334510 Os_TE_334510 Chr4 1073930 1073929 - NDNA1TNA_OS 334 0.0034 (10/2964) 0 * Os_TE_334511 Os_TE_334508 Chr4 1072804 1072805 + TRUNCATOR2_LTR 2904 0.0003 (1/2995) 0 * * Os_TE_334502 Chr4 1071063 1071064 - GYPSY-A_LTR 8951 0.0037 (11/2970) 0 * Os_TE_334501 Os_TE_334501 Chr4 1071059 1071058 + GYPSY-A_LTR 8951 0.0037 (11/2968) 0 * Os_TE_334502 Os_TE_334487 Chr4 1054512 1054513 + MuDR3_OS 8604 0.0311 (92/2954) 0 * Os_TE_334486 Os_TE_334486 Chr4 1054504 1054503 - MuDR3_OS 8604 0.0295 (87/2954) 0 * Os_TE_334487 Os_TE_334477 Chr4 1050614 1050615 - SC-3_LTR 5748 0.0026 (6/2273) 0 * Os_TE_334476 Os_TE_334476 Chr4 1050610 1050609 + ORSiTERTOOT00296 5553 0.0023 (7/2991) 0 * Os_TE_334477 Os_TE_334475 Chr4 1050008 1050007 + TREP220 109 0.3896 (801/2056) 0 * * Os_TE_334473 Chr4 1049718 1048428 - OSTE14 885 0.7534 (2240/2973) 1 Intact * Os_TE_334468 Chr4 1044241 1044242 + GYPSY-A_LTR 8951 0.0003 (1/2992) 0 * Os_TE_334467 Os_TE_334467 Chr4 1044237 1044236 - SZ-40LTR 2465 0.0003 (1/2991) 0 * Os_TE_334468 Os_TE_334463 Chr4 1042139 1042140 + MUDROS2 6821 0.2307 (663/2874) 0 * Os_TE_334462 Os_TE_334462 Chr4 1042133 1042132 - MUDROS2 6821 0.2444 (719/2942) 0 * Os_TE_334463 Os_TE_334437 Chr4 1021673 1021674 - FOCUS 257 0.0078 (23/2931) 0 * * Os_TE_334431 Chr4 1019855 1019994 + ORSgTEMT00500201 140 0.8843 (2592/2931) 1 Intact * Os_TE_334429 Chr4 1019788 1019789 - TYPEM 227 0.0086 (22/2557) 0 * Os_TE_334428 Os_TE_334428 Chr4 1019787 1019786 - ORSgTEMT02400179 221 0.0080 (23/2867) 0 * Os_TE_334429 Os_TE_334424 Chr4 1015024 1010825 - TOUNJ-30 377 0.0634 (188/2967) 1 Intact * Os_TE_334422 Chr4 1010324 1010325 - TYPEM 227 0.0363 (96/2645) 0 * Os_TE_334421 Os_TE_334421 Chr4 1010323 1010322 - ORSgTEMT02400179 221 0.0368 (107/2910) 0 * Os_TE_334422 Os_TE_334420 Chr4 1010258 1010259 + MuDR3_OS 8604 0.0014 (4/2924) 0 * Os_TE_334419 Os_TE_334419 Chr4 1010251 1010250 - MuDR3_OS 8604 0.0011 (3/2809) 0 * Os_TE_334420 Os_TE_334412 Chr4 1007455 1007454 - ORSgTEMT01702177 127 0.1215 (362/2980) 0 * Os_TE_334411 Os_TE_334411 Chr4 1007443 1007444 + STOWAWAY1_OS 149 0.1178 (351/2979) 0 * Os_TE_334412 Os_TE_334392 Chr4 999416 999417 - COPI2_LTR 4733 0.0110 (32/2919) 0 * Os_TE_334391 Os_TE_334391 Chr4 999412 999411 + COPI2_LTR 4733 0.0101 (30/2973) 0 * Os_TE_334392 Os_TE_334384 Chr4 997601 997602 - GYPSY-A_LTR 8951 0.0010 (3/2999) 0 * Os_TE_334383 Os_TE_334383 Chr4 997597 997596 + GYPSY-A_LTR 8951 0.0010 (3/2996) 0 * Os_TE_334384 Os_TE_334382 Chr4 997228 996989 + ORSgTEMT00901798 232 0.5280 (906/1716) 1 Intact * Os_TE_334379 Chr4 996980 996981 - STOWAWAY17_OS 259 0.0362 (106/2931) 0 * * Os_TE_334369 Chr4 995691 995690 + RIREX_LTR 8828 0.0194 (58/2986) 0 * * Os_TE_334357 Chr4 994675 994676 - HATOS1 3488 0.0074 (22/2967) 0 * Os_TE_334356 Os_TE_334356 Chr4 994668 994667 + QINNIU 528 0.0067 (20/2967) 0 * Os_TE_334357 Os_TE_334350 Chr4 992711 992712 + SPMLIKE 10989 0.0083 (24/2901) 0 * * Os_TE_334346 Chr4 991336 991337 + COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_334345 Os_TE_334345 Chr4 991332 991331 - COPIA2-LTR_OS 6433 0.0003 (1/2981) 0 * Os_TE_334346 Os_TE_334344 Chr4 990806 990807 + SZ-48LTR 3632 0.0003 (1/2998) 0 * * Os_TE_334338 Chr4 989456 989457 + TNR8-21 428 0.0915 (271/2961) 0 * Os_TE_334337 Os_TE_334337 Chr4 989448 989447 + TNR8-21 428 0.0934 (276/2956) 0 * Os_TE_334338 Os_TE_334335 Chr4 988506 988505 - EnSpm-16_OS 13336 0.0821 (243/2960) 0 * * Os_TE_334334 Chr4 988246 988247 + SPMLIKE 10989 0.1248 (367/2941) 0 * Os_TE_334333 Os_TE_334333 Chr4 988244 988243 - ORSgTETN00200001 10994 0.1186 (348/2933) 0 * Os_TE_334334 Os_TE_334324 Chr4 987690 987689 + SPMLIKE 10989 0.0031 (9/2950) 0 * * Os_TE_334322 Chr4 987145 987144 - OSLINE1-2 7128 0.0251 (75/2986) 0 * * Os_TE_334320 Chr4 987023 986868 + ORSgTEMT01701101 133 0.3900 (649/1664) 1 Intact Os_TE_334319 Os_TE_334319 Chr4 986868 987019 + ORSgTEMT01700741 196 0.2304 (641/2782) 1 Intact Os_TE_334320 Os_TE_334318 Chr4 986792 986793 + RETROSAT4_LTR 13504 0.0087 (26/2983) 0 * Os_TE_334317 Os_TE_334317 Chr4 986788 986787 - SZ-35LTR 3853 0.0091 (27/2963) 0 * Os_TE_334318 Os_TE_334311 Chr4 985909 985910 + TNR2A 152 0.0787 (232/2948) 0 * Os_TE_334310 Os_TE_334310 Chr4 985893 985892 - TNR2A 152 0.0952 (246/2585) 0 * Os_TE_334311 Os_TE_334306 Chr4 985279 985280 - TYPEM 227 0.0025 (7/2844) 0 * * Os_TE_334305 Chr4 985086 985087 - COPIA2-LTR_OS 6433 0.0003 (1/2942) 0 * Os_TE_334304 Os_TE_334304 Chr4 985082 985081 + COPIA2-LTR_OS 6433 0.0003 (1/2938) 0 * Os_TE_334305 Os_TE_334301 Chr4 984630 984631 + RIREX_LTR 8828 0.0067 (20/2980) 0 * * Os_TE_334299 Chr4 984145 984144 + ORSgTEMT01601049 237 0.7352 (1860/2530) 0 * * Os_TE_334296 Chr4 983895 983896 - MUDRN3_OS 903 0.0177 (42/2373) 0 * * Os_TE_334284 Chr4 981487 980835 - CLOUD 734 0.3302 (969/2935) 1 Intact * Os_TE_334282 Chr4 979723 979494 + ORSgTEMT01600486 232 0.3284 (961/2926) 1 Intact * Os_TE_334279 Chr4 979350 979351 - OSTE20 496 0.0021 (6/2871) -1 * Os_TE_334278 Os_TE_334278 Chr4 979346 979345 + OSTE20 496 0.0021 (6/2876) -1 * Os_TE_334279 Os_TE_334267 Chr4 972659 972658 + COPIA2-LTR_OS 6433 0.0004 (1/2710) 0 * * Os_TE_334263 Chr4 971343 971342 + SETARIA1 1293 0.0036 (10/2797) 0 * * Os_TE_334259 Chr4 971058 971301 + TREP215 239 0.3348 (960/2867) 1 Intact * Os_TE_334255 Chr4 969919 969920 - SZ-9LTR 965 0.0014 (4/2950) 0 * Os_TE_334254 Os_TE_334254 Chr4 969915 969914 + SZ-9LTR 965 0.0014 (4/2950) 0 * Os_TE_334255 Os_TE_334253 Chr4 969846 969847 - ENSPM6_OS 9815 0.0090 (27/2984) 0 * Os_TE_334252 Os_TE_334252 Chr4 969844 969843 + ENSPM5_OS 9581 0.0090 (27/2993) 0 * Os_TE_334253 Os_TE_334249 Chr4 968086 968085 - TYPEU1 380 0.0174 (52/2982) 0 * * Os_TE_334240 Chr4 966391 966163 - ORSgTEMT01600101 235 0.5259 (1544/2936) 1 Intact Os_TE_334237 Os_TE_334237 Chr4 966153 966391 - ORSgTEMT01601208 238 0.5318 (1556/2926) 1 Intact Os_TE_334240 Os_TE_334236 Chr4 965859 965860 + RIREX_LTR 8828 0.0037 (11/2976) 0 * Os_TE_334235 Os_TE_334235 Chr4 965855 965854 - RIREX_LTR 8828 0.0037 (11/2969) 0 * Os_TE_334236 Os_TE_334233 Chr4 965580 965581 + DASIA-2 1198 0.2253 (672/2983) 0 * Os_TE_334232 Os_TE_334232 Chr4 965572 965571 + DASIA-2 1198 0.0574 (143/2492) 0 * Os_TE_334233 Os_TE_334231 Chr4 965463 965464 + RIREX_LTR 8828 0.0003 (1/2969) 0 * Os_TE_334230 Os_TE_334230 Chr4 965459 965458 - RIREX_LTR 8828 0.0003 (1/2970) 0 * Os_TE_334231 Os_TE_334223 Chr4 963897 963898 - GYPSY-A_LTR 8951 0.0160 (45/2813) 0 * * Os_TE_334214 Chr4 962764 962765 + ORSgTEMT01601122 212 0.0003 (1/2876) 0 * * Os_TE_334195 Chr4 958016 958017 + OSTE33 1012 0.0095 (28/2962) 0 * * Os_TE_334186 Chr4 955546 955547 - COPIA2-LTR_OS 6433 0.0004 (1/2678) 0 * Os_TE_334185 Os_TE_334185 Chr4 955542 955541 + COPIA2-LTR_OS 6433 0.0004 (1/2694) 0 * Os_TE_334186 Os_TE_334183 Chr4 955413 955414 - RETRO2_LTR 12874 0.0007 (2/2810) 0 * * Os_TE_334182 Chr4 955390 955391 - RETRO1_LTR 8314 0.0015 (4/2687) 0 * Os_TE_334181 Os_TE_334181 Chr4 955386 955385 + RETRO2A_LTR 12895 0.0015 (4/2692) 0 * Os_TE_334182 Os_TE_334162 Chr4 953644 953643 - TRUNCATOR 2918 0.0414 (119/2872) 0 * Os_TE_334161 Os_TE_334161 Chr4 953643 953644 + TRUNCATOR 2918 0.0500 (146/2921) 0 * Os_TE_334162 Os_TE_334160 Chr4 953434 953433 + ORSgTETN00200005 1121 0.1006 (294/2923) 0 * Os_TE_334159 Os_TE_334159 Chr4 953430 953431 + CACTA-B 1103 0.1008 (294/2916) 0 * Os_TE_334160 Os_TE_334123 Chr4 942110 942109 - RIREX_LTR 8828 0.0198 (52/2624) 0 * * Os_TE_334117 Chr4 941309 941308 - RIRE2_LTR 11306 0.0011 (3/2631) 0 * * Os_TE_334073 Chr4 927848 927847 - OSLINE1_2 6317 0.0004 (1/2593) 0 * * Os_TE_334067 Chr4 927397 927396 - RIREX_LTR 8828 0.0027 (7/2602) 0 * * Os_TE_334052 Chr4 921542 921543 + TRSA_OS 353 0.0007 (2/2929) 0 * * Os_TE_334044 Chr4 920336 920337 + SPMLIKE 10989 0.0007 (2/2915) 0 * Os_TE_334043 Os_TE_334043 Chr4 920334 920333 - ORSgTETN00200001 10994 0.0003 (1/2943) 0 * Os_TE_334044 Os_TE_334031 Chr4 919038 919037 + ORSiCMCM00100019 2717 0.0834 (245/2936) 0 * * Os_TE_334018 Chr4 916686 916687 - INDITTO 263 0.1697 (508/2994) 0 * Os_TE_334017 Os_TE_334017 Chr4 916685 916684 + INDITTO 263 0.1663 (497/2988) 0 * Os_TE_334018 Os_TE_334016 Chr4 916545 916544 - NDNA1TNA_OS 334 0.0168 (50/2984) 0 * Os_TE_334015 Os_TE_334015 Chr4 916544 916545 + NDNA1TNA_OS 334 0.0178 (53/2984) 0 * Os_TE_334016 Os_TE_334007 Chr4 913365 913366 - CRM-LTR_OS 7749 0.8550 (2506/2931) 0 * * Os_TE_334006 Chr4 912240 912241 + NDNA1TNA_OS 334 0.0211 (62/2944) 0 * Os_TE_334005 Os_TE_334005 Chr4 912238 912237 - NDNA1TNA_OS 334 0.0201 (58/2885) 0 * Os_TE_334006 Os_TE_334004 Chr4 911627 911628 - NDNA1TNA_OS 334 0.0077 (23/2986) 0 * Os_TE_334003 Os_TE_334003 Chr4 911625 911624 + NDNA1TNA_OS 334 0.0077 (23/2979) 0 * Os_TE_334004 Os_TE_334002 Chr4 909794 909793 - ORSgTEMT01702039 162 0.0197 (59/2989) 0 * Os_TE_334001 Os_TE_334001 Chr4 909791 909792 + ORSgTEMT01700513 151 0.0201 (60/2992) 0 * Os_TE_334002 Os_TE_333992 Chr4 905530 905529 - RETROSAT2LTR 12796 0.0048 (14/2940) 0 * * Os_TE_333984 Chr4 904765 904766 + GYPSY-A_LTR 8951 0.0004 (1/2857) 0 * * Os_TE_333975 Chr4 903172 903171 - RETROSAT5_LTR 13878 0.0180 (53/2937) 0 * * Os_TE_333967 Chr4 899447 899448 + ORSgTEMT02400041 225 0.1381 (337/2440) 0 * * Os_TE_333965 Chr4 899179 899180 - RIREX_LTR 8828 0.0014 (4/2909) 0 * Os_TE_333964 Os_TE_333964 Chr4 899175 899174 + RIREX_LTR 8828 0.0023 (5/2207) 0 * Os_TE_333965 Os_TE_333963 Chr4 898868 898867 - RETRO2_LTR 12874 0.0088 (23/2627) 0 * * Os_TE_333958 Chr4 898258 898259 + ORSgTETNOOT00908 242 0.0019 (5/2596) 0 * * Os_TE_333955 Chr4 897641 897642 + RETROSAT2LTR 12796 0.0018 (5/2817) 0 * Os_TE_333954 Os_TE_333954 Chr4 897639 897638 - RETROSAT2LTR 12796 0.0018 (5/2824) 0 * Os_TE_333955 Os_TE_333950 Chr4 896300 896299 - MuDR4_OS 7610 0.0844 (221/2619) 0 * * Os_TE_333946 Chr4 894930 894929 + HARB-1_OS 5166 0.0004 (1/2313) 0 * * Os_TE_333945 Chr4 894093 890760 - SZ-40LTR 2465 0.1024 (223/2178) 1 Intact Os_TE_333940 Os_TE_333940 Chr4 890760 894093 + SZ-40LTR 2465 0.1003 (218/2174) 1 Intact Os_TE_333945 Os_TE_333938 Chr4 889595 889594 + F770 284 0.2148 (512/2384) 0 * * Os_TE_333929 Chr4 884833 884832 - COPIA2-LTR_OS 6433 0.0040 (10/2521) 0 * * Os_TE_333927 Chr4 883976 883975 - RIREX_LTR 8828 0.0008 (2/2376) 0 * * Os_TE_333923 Chr4 882927 882928 - RIRE2_LTR 11306 0.1952 (461/2362) 0 * * Os_TE_333903 Chr4 868594 868593 - TRUNCATOR2_LTR 2904 0.0004 (1/2613) 0 * * Os_TE_333900 Chr4 868272 868273 - EnSpm-11_OS 13126 0.0467 (122/2613) 0 * Os_TE_333899 Os_TE_333899 Chr4 868270 868269 + EnSpm-11_OS 13126 0.0460 (120/2607) 0 * Os_TE_333900 Os_TE_333884 Chr4 865532 865533 - HARB-1_OS 5166 0.0011 (3/2849) 0 * Os_TE_333883 Os_TE_333883 Chr4 865530 865529 + HARB-1_OS 5166 0.0011 (3/2838) 0 * Os_TE_333884 Os_TE_333875 Chr4 865000 865001 - SZ-35LTR 3853 0.2120 (454/2142) 0 * * Os_TE_333866 Chr4 862800 858598 - ENSPM4_OS 11610 0.0720 (185/2569) 1 Intact * Os_TE_333863 Chr4 857805 857806 + RIREX_LTR 8828 0.0008 (2/2421) 0 * Os_TE_333862 Os_TE_333862 Chr4 857801 857800 - RIREX_LTR 8828 0.0008 (2/2417) 0 * Os_TE_333863 Os_TE_333861 Chr4 857218 857219 + SPMLIKE 10989 0.0072 (20/2789) 0 * * Os_TE_333859 Chr4 856256 848571 - MuDR4_OS 7610 0.0720 (201/2790) 1 Intact Os_TE_333856 Os_TE_333856 Chr4 848570 856255 - MuDR4_OS 7610 0.0675 (188/2784) 1 Intact Os_TE_333859 Os_TE_333854 Chr4 847979 847980 - RIREX_LTR 8828 0.0007 (2/2762) 0 * * Os_TE_333853 Chr4 847860 847861 - COPI2_LTR 4733 0.0004 (1/2753) 0 * Os_TE_333852 Os_TE_333852 Chr4 847856 847855 + COPI2_LTR 4733 0.0004 (1/2778) 0 * Os_TE_333853 Os_TE_333851 Chr4 847800 847801 - ENSPM6_OS 9815 0.0236 (58/2458) 0 * Os_TE_333850 Os_TE_333850 Chr4 847798 847797 + ENSPM5_OS 9581 0.0209 (56/2679) 0 * Os_TE_333851 Os_TE_333846 Chr4 847010 847009 - SZ-55_LTR 10318 0.0004 (1/2776) 0 * * Os_TE_333835 Chr4 843288 843289 - TRUNCATOR2_LTR 2904 0.0012 (3/2440) 0 * * Os_TE_333827 Chr4 839854 839619 + ORSgTETNOOT00908 242 0.0695 (199/2864) 1 Intact * Os_TE_333816 Chr4 827071 818300 + RIREX_LTR 8828 0.0693 (188/2712) 1 Intact * Os_TE_333755 Chr4 789047 789046 - CLOUD 734 0.0005 (1/2072) 0 * * Os_TE_333754 Chr4 788889 788890 - RIREX_LTR 8828 0.0017 (3/1759) 0 * Os_TE_333753 Os_TE_333753 Chr4 788885 788884 + RIREX_LTR 8828 0.0017 (3/1759) 0 * Os_TE_333754 Os_TE_333752 Chr4 788573 788574 + RIREX_LTR 8828 0.0011 (2/1775) 0 * Os_TE_333751 Os_TE_333751 Chr4 788569 788568 - RIREX_LTR 8828 0.0011 (2/1774) 0 * Os_TE_333752 Os_TE_333739 Chr4 781953 781952 - TRUNCATOR2_LTR 2904 0.5625 (909/1616) 0 * * Os_TE_333721 Chr4 778115 778116 - Cassandra_OS-LTR 764 0.0059 (7/1196) 0 * * Os_TE_333625 Chr4 748872 748873 + SPMLIKE 10989 0.0020 (6/2957) 0 * * Os_TE_333606 Chr4 744120 744119 - TRUNCATOR2_LTR 2904 0.0047 (11/2334) 0 * * Os_TE_333555 Chr4 730840 730841 - RIREX_LTR 8828 0.0059 (17/2886) 0 * Os_TE_333554 Os_TE_333554 Chr4 730836 730835 + RIREX_LTR 8828 0.0059 (17/2885) 0 * Os_TE_333555 Os_TE_333546 Chr4 729806 729807 - MuDR4_OS 7610 0.0010 (3/2926) 0 * Os_TE_333545 Os_TE_333545 Chr4 729800 729799 - MuDR4_OS 7610 0.0010 (3/2911) 0 * Os_TE_333546 Os_TE_333543 Chr4 729715 729716 + RIREX_LTR 8828 0.0003 (1/2922) 0 * Os_TE_333542 Os_TE_333542 Chr4 729711 729710 - RIREX_LTR 8828 0.0003 (1/2884) 0 * Os_TE_333543 Os_TE_333534 Chr4 724298 724299 + SPMLIKE 10989 0.0004 (1/2809) 0 * Os_TE_333533 Os_TE_333533 Chr4 724292 724291 - SPMLIKE 10989 0.0003 (1/2907) 0 * Os_TE_333534 Os_TE_333496 Chr4 711475 711476 - SZ-67LTR 1540 0.0148 (23/1552) -1 * * Os_TE_333478 Chr4 703772 703773 - RIREX_LTR 8828 0.0076 (20/2616) 0 * Os_TE_333477 Os_TE_333477 Chr4 703768 703767 + RIREX_LTR 8828 0.0078 (21/2697) 0 * Os_TE_333478 Os_TE_333474 Chr4 703623 703624 + MuDR2_OS 6770 0.0033 (9/2769) 0 * Os_TE_333473 Os_TE_333473 Chr4 703614 703613 - MuDR2_OS 6770 0.0154 (43/2787) 0 * Os_TE_333474 Os_TE_333469 Chr4 702642 702641 + STOWAWAY51_OS 246 0.0010 (3/2901) 0 * Os_TE_333468 Os_TE_333468 Chr4 702636 702637 - STOWAWAY51_OS 246 0.0010 (3/2906) 0 * Os_TE_333469 Os_TE_333452 Chr4 696935 696936 + SZLTR 1249 0.0414 (111/2684) 0 * * Os_TE_333443 Chr4 693186 693187 + SZ-17_LTR 3387 0.0003 (1/2913) 0 * Os_TE_333442 Os_TE_333442 Chr4 693182 693181 - SZ-17_LTR 3387 0.0003 (1/2912) 0 * Os_TE_333443 Os_TE_333439 Chr4 692665 692666 + RIREX_LTR 8828 0.0010 (3/2883) 0 * Os_TE_333438 Os_TE_333438 Chr4 692661 692660 - RIREX_LTR 8828 0.0007 (2/2896) 0 * Os_TE_333439 Os_TE_333375 Chr4 666587 666588 + ORSiTERTOOT00296 5553 0.0003 (1/2917) 0 * Os_TE_333374 Os_TE_333374 Chr4 666583 666582 - SC-3_LTR 5748 0.0003 (1/2919) 0 * Os_TE_333375 Os_TE_333373 Chr4 666454 666455 - RIRE3A_LTR 10580 0.0219 (64/2917) 0 * Os_TE_333372 Os_TE_333372 Chr4 666450 666449 + RIRE3A_LTR 10580 0.0216 (63/2917) 0 * Os_TE_333373 Os_TE_333369 Chr4 663437 663438 + RETRO2A_LTR 12895 0.0003 (1/2866) 0 * * Os_TE_333367 Chr4 660806 660807 - MDR2 6967 0.0024 (7/2913) 0 * Os_TE_333366 Os_TE_333366 Chr4 660798 660797 + MDR2 6967 0.0024 (7/2913) 0 * Os_TE_333367 Os_TE_333364 Chr4 660771 660770 - RIRE2_LTR 11306 0.0003 (1/2901) 0 * * Os_TE_333354 Chr4 659146 659145 + ORSgTETNOOT00908 242 0.3500 (1013/2894) 0 * * Os_TE_333315 Chr4 651968 652669 + Mudr5_OS 5952 0.2806 (806/2872) 1 Intact * Os_TE_333314 Chr4 651369 651370 + SPMLIKE 10989 0.0003 (1/2963) 0 * Os_TE_333313 Os_TE_333313 Chr4 651367 651366 - SPMLIKE 10989 0.0003 (1/2949) 0 * Os_TE_333314 Os_TE_333312 Chr4 651052 651053 - ORSgTERT00201174 430 0.0003 (1/2947) 0 * * Os_TE_333311 Chr4 650268 650267 + NDNA1TNA_OS 334 0.3654 (928/2540) 0 * Os_TE_333310 Os_TE_333310 Chr4 650267 650268 + ORSgTEMT00101674 340 0.3321 (878/2644) 0 * Os_TE_333311 Os_TE_333309 Chr4 650220 650219 - NDNA1TNA_OS 334 0.0185 (49/2649) 0 * * Os_TE_333308 Chr4 649070 649071 - SC-8_LTR 4951 0.0003 (1/2983) 0 * * Os_TE_333306 Chr4 646140 646139 + SZ-55_LTR 10318 0.0020 (6/2971) 0 * * Os_TE_333303 Chr4 644679 644678 + ORSgTEMT00900266 245 0.0194 (53/2727) 0 * * Os_TE_333297 Chr4 640522 640523 + OLO24 345 0.0065 (7/1073) 0 * * Os_TE_333295 Chr4 640225 640226 - COPIA3-LTR_OS 5061 0.0660 (70/1060) 0 * Os_TE_333294 Os_TE_333294 Chr4 640221 640220 + COPIA3-LTR_OS 5061 0.1042 (75/720) 0 * Os_TE_333295 Os_TE_333293 Chr4 640074 640073 + SC-1_LTR 6888 0.0508 (54/1063) 0 * * Os_TE_333288 Chr4 639368 639369 - SZ-58LTR 114 0.0067 (7/1051) 0 * * Os_TE_333287 Chr4 639266 639267 - SZ-55_LTR 10318 0.3308 (351/1061) 0 * Os_TE_333286 Os_TE_333286 Chr4 639262 639261 + SZ-55_LTR 10318 0.3381 (355/1050) 0 * Os_TE_333287 Os_TE_333285 Chr4 638896 638897 + SPMLIKE 10989 0.1798 (73/406) 0 * Os_TE_333284 Os_TE_333284 Chr4 638894 638893 - ORSgTETN00200001 10994 0.0973 (69/709) 0 * Os_TE_333285 Os_TE_333282 Chr4 638708 638707 - ORSgTEMT01602404 253 0.4072 (272/668) 0 * * Os_TE_333281 Chr4 638499 638498 - ORSgTEMT00502237 143 0.0974 (70/719) 0 * Os_TE_333280 Os_TE_333280 Chr4 638495 638496 - ORSgTEMT00502293 151 0.1006 (73/726) 0 * Os_TE_333281 Os_TE_333279 Chr4 638054 638055 - RIREX_LTR 8828 0.0166 (12/722) 0 * Os_TE_333278 Os_TE_333278 Chr4 638050 638049 + RIREX_LTR 8828 0.0045 (12/2695) 0 * Os_TE_333279 Os_TE_333277 Chr4 638044 638043 + ORSgTEMT01400024 215 0.7382 (1906/2582) 0 * Os_TE_333276 Os_TE_333276 Chr4 638037 638038 - ORSgTEMT01400011 212 0.7509 (2017/2686) 0 * Os_TE_333277 Os_TE_333275 Chr4 637985 637871 + SZ-58LTR 114 0.1185 (314/2649) 0.93 Intact * Os_TE_333269 Chr4 636436 637608 + COPIA1-LTR_OS 9292 0.1170 (311/2659) 1 Solo_LTR * Os_TE_333267 Chr4 636254 636255 + ORSgTEMT01601122 212 0.0209 (55/2633) 0 * * Os_TE_333262 Chr4 635350 635349 + TYPEH 309 0.7696 (2004/2604) 0 * Os_TE_333261 Os_TE_333261 Chr4 635349 635350 + ORSgTEMT01900027 302 0.7654 (1971/2575) 0 * Os_TE_333262 Os_TE_333252 Chr4 629579 629580 + SZ-62LTR 3649 0.0280 (55/1964) 0 * * Os_TE_333247 Chr4 629210 629209 + RETRO2A_LTR 12895 0.0014 (4/2773) 0 * * Os_TE_333241 Chr4 623578 623579 + GYPSY-A_LTR 8951 0.0003 (1/2986) 0 * * Os_TE_333239 Chr4 623388 623389 - SZ-61LTR 2410 0.8870 (2637/2973) 0 * * Os_TE_333232 Chr4 622971 622972 + F569 228 0.8813 (2362/2680) 0 * * Os_TE_333228 Chr4 617208 617209 + ORSgTEMT00502327 143 0.0027 (8/2970) 0 * Os_TE_333227 Os_TE_333227 Chr4 617206 617205 + ORSgTETNOOT02179 137 0.0020 (6/2976) 0 * Os_TE_333228 Os_TE_333225 Chr4 616440 616439 - COWARD 200 0.0020 (6/2954) 0 * * Os_TE_333200 Chr4 601291 601292 + ORSgTEMT01700715 134 0.0023 (7/2988) 0 * * Os_TE_333198 Chr4 601055 601054 - ORSgTEMT00900099 250 0.0003 (1/2983) 0 * Os_TE_333197 Os_TE_333197 Chr4 601051 601052 + ORSgTEMT00901862 245 0.0003 (1/2989) 0 * Os_TE_333198 Os_TE_333196 Chr4 601030 601031 - NDNA1TNA_OS 334 0.0023 (7/2987) 0 * Os_TE_333195 Os_TE_333195 Chr4 601028 601027 + NDNA1TNA_OS 334 0.0023 (7/2987) 0 * Os_TE_333196 Os_TE_333193 Chr4 599597 599598 - ORSiTETNOOT00216 3569 0.0151 (40/2654) 0 * Os_TE_333192 Os_TE_333192 Chr4 599590 599589 + TWIFBIG 3567 0.0019 (5/2651) 0 * Os_TE_333193 Os_TE_333189 Chr4 598887 598886 - NDNA1TNA_OS 334 0.0030 (9/2963) 0 * Os_TE_333188 Os_TE_333188 Chr4 598879 598880 + NDNA1TNA_OS 334 0.0037 (11/2944) 0 * Os_TE_333189 Os_TE_333185 Chr4 598488 598489 - TRUNCATOR2_LTR 2904 0.0024 (7/2882) 0 * Os_TE_333184 Os_TE_333184 Chr4 598484 598483 + ORSiCMCM00100019 2717 0.0034 (7/2050) 0 * Os_TE_333185 Os_TE_333175 Chr4 596765 596764 + TELIA 141 0.0174 (51/2926) 0 * * Os_TE_333174 Chr4 596745 596746 + RIREX_LTR 8828 0.0304 (89/2932) 0 * * Os_TE_333166 Chr4 595438 595439 - COPI2_LTR 4733 0.0003 (1/2967) 0 * Os_TE_333165 Os_TE_333165 Chr4 595434 595433 + COPI2_LTR 4733 0.0007 (2/2981) 0 * Os_TE_333166 Os_TE_333164 Chr4 595413 595412 - OSLINE1-2 7128 0.0171 (51/2986) 0 * * Os_TE_333153 Chr4 589866 589867 + CRATA 4786 0.0023 (7/2994) 0 * Os_TE_333152 Os_TE_333152 Chr4 589859 589858 - CRATA 4786 0.0023 (7/2994) 0 * Os_TE_333153 Os_TE_333151 Chr4 589557 589558 + RIRE2_LTR 11306 0.0220 (66/2996) 0 * Os_TE_333150 Os_TE_333150 Chr4 589553 589552 - RIRE2_LTR 11306 0.0217 (65/2994) 0 * Os_TE_333151 Os_TE_333114 Chr4 576831 576575 - ORSgTEMT00901894 230 0.8929 (2642/2959) 1 Intact * Os_TE_333106 Chr4 574501 574502 + COPIA2-LTR_OS 6433 0.0007 (2/2987) 0 * Os_TE_333105 Os_TE_333105 Chr4 574497 574496 - COPIA2-LTR_OS 6433 0.0007 (2/2988) 0 * Os_TE_333106 Os_TE_333104 Chr4 574342 574343 + SPMLIKE 10989 0.0024 (7/2960) 0 * Os_TE_333103 Os_TE_333103 Chr4 574340 574339 - ORSgTETN00200001 10994 0.0020 (6/2992) 0 * Os_TE_333104 Os_TE_333102 Chr4 574288 574287 - ORSgTEMT01601493 303 0.0003 (1/2986) 0 * Os_TE_333101 Os_TE_333101 Chr4 574285 574286 + ORSgTEMT01601934 207 0.0004 (1/2654) 0 * Os_TE_333102 Os_TE_333097 Chr4 572973 572974 - RIREX_LTR 8828 0.0010 (3/2990) 0 * Os_TE_333096 Os_TE_333096 Chr4 572969 572968 + RIREX_LTR 8828 0.0010 (3/2988) 0 * Os_TE_333097 Os_TE_333095 Chr4 572906 572907 + RETROSAT2LTR 12796 0.0064 (19/2990) 0 * Os_TE_333094 Os_TE_333094 Chr4 572904 572903 - RETROSAT2LTR 12796 0.0064 (19/2983) 0 * Os_TE_333095 Os_TE_333093 Chr4 572494 572495 - SZ-22_LTR 4403 0.0003 (1/2917) 0 * Os_TE_333092 Os_TE_333092 Chr4 572490 572489 + ORSiTERTOOT00226 792 0.0003 (1/2920) 0 * Os_TE_333093 Os_TE_333080 Chr4 571115 570229 + OSTE15 1168 0.8785 (2495/2840) 1 Intact * Os_TE_333061 Chr4 562492 562493 + NDNA1TNA_OS 334 0.0004 (1/2673) 0 * Os_TE_333060 Os_TE_333060 Chr4 562490 562489 - NDNA1TNA_OS 334 0.0004 (1/2672) 0 * Os_TE_333061 Os_TE_333058 Chr4 561559 561560 + COPI2_LTR 4733 0.0004 (1/2670) 0 * Os_TE_333057 Os_TE_333057 Chr4 561555 561554 - COPI2_LTR 4733 0.0004 (1/2670) 0 * Os_TE_333058 Os_TE_333053 Chr4 559917 559918 - RIRE2_LTR 11306 0.0026 (7/2660) 0 * Os_TE_333052 Os_TE_333052 Chr4 559913 559912 + RIRE2_LTR 11306 0.0026 (7/2654) 0 * Os_TE_333053 Os_TE_333038 Chr4 556270 556269 + COPI2_LTR 4733 0.0084 (22/2627) 0 * * Os_TE_333034 Chr4 555024 555023 - TYPEM 227 0.0003 (1/2948) 0 * * Os_TE_333033 Chr4 554998 554997 - TYPEM 227 0.0060 (17/2845) 0 * Os_TE_333032 Os_TE_333032 Chr4 554992 554993 - ORSgTEMT02400240 223 0.0059 (17/2894) 0 * Os_TE_333033 Os_TE_333031 Chr4 554961 554960 - NDNA1TNA_OS 334 0.0280 (82/2925) 0 * Os_TE_333030 Os_TE_333030 Chr4 554960 554961 + ORSgTEMT00100949 340 0.0282 (83/2948) 0 * Os_TE_333031 Os_TE_333029 Chr4 554741 554742 + COPIA2-LTR_OS 6433 0.0197 (58/2939) 0 * Os_TE_333028 Os_TE_333028 Chr4 554737 554736 - COPIA2-LTR_OS 6433 0.0218 (64/2937) 0 * Os_TE_333029 Os_TE_333026 Chr4 554504 554505 - AMYLTP 383 0.0177 (49/2776) 0 * Os_TE_333025 Os_TE_333025 Chr4 554496 554495 + AMYLTP 383 0.0164 (45/2736) 0 * Os_TE_333026 Os_TE_333020 Chr4 553623 553624 + ORSgTETNOOT01219 231 0.0024 (7/2977) 0 * Os_TE_333019 Os_TE_333019 Chr4 553618 553617 + ORSgTETNOOT00908 242 0.0021 (6/2903) 0 * Os_TE_333020 Os_TE_333018 Chr4 552689 552690 + COPIA2-LTR_OS 6433 0.0007 (2/2996) 0 * * Os_TE_333004 Chr4 548875 548876 - ORSgTERT00201216 11284 0.0224 (63/2809) 0 * Os_TE_333003 Os_TE_333003 Chr4 548871 548870 - RIRE2_LTR 11306 0.0216 (61/2825) 0 * Os_TE_333004 Os_TE_333001 Chr4 547998 547999 + SZ-43LTR 4039 0.0211 (63/2979) 0 * Os_TE_333000 Os_TE_333000 Chr4 547994 547993 - SZ-43LTR 4039 0.0227 (64/2824) 0 * Os_TE_333001 Os_TE_332984 Chr4 540094 540095 - ORSgTERT00201216 11284 0.0225 (64/2841) 0 * Os_TE_332983 Os_TE_332983 Chr4 540090 540089 - RIRE2_LTR 11306 0.0229 (65/2841) 0 * Os_TE_332984 Os_TE_332981 Chr4 538973 525279 - ENSPM4_OS 11610 0.1112 (329/2958) 1 Intact * Os_TE_332975 Chr4 524985 524986 + RETRO2A_LTR 12895 0.0214 (62/2896) 0 * Os_TE_332974 Os_TE_332974 Chr4 524981 524980 - RETRO1_LTR 8314 0.0205 (55/2678) 0 * Os_TE_332975 Os_TE_332972 Chr4 524206 524207 + SPMLIKE 10989 0.0041 (12/2930) 0 * Os_TE_332971 Os_TE_332971 Chr4 524204 524203 - ORSgTETN00200001 10994 0.0017 (5/2920) 0 * Os_TE_332972 Os_TE_332961 Chr4 519285 519286 + RIREX_LTR 8828 0.0003 (1/2954) 0 * Os_TE_332960 Os_TE_332960 Chr4 519281 519280 - RIREX_LTR 8828 0.0003 (1/2953) 0 * Os_TE_332961 Os_TE_332958 Chr4 516872 516873 - RETROSAT4_LTR 13504 0.3301 (989/2996) 0 * Os_TE_332957 Os_TE_332957 Chr4 516868 516867 + RETROSAT4_LTR 13504 0.3104 (920/2964) 0 * Os_TE_332958 Os_TE_332956 Chr4 516671 516672 - RETRO1_LTR 8314 0.0033 (10/2992) 0 * Os_TE_332955 Os_TE_332955 Chr4 516667 516666 + RETRO1_LTR 8314 0.0030 (9/2990) 0 * Os_TE_332956 Os_TE_332860 Chr4 489945 489946 + OLO24 345 0.0030 (9/2985) 0 * Os_TE_332859 Os_TE_332859 Chr4 489943 489942 - OLO24 345 0.0030 (9/2984) 0 * Os_TE_332860 Os_TE_332844 Chr4 486099 486098 + ORSgTEMT01700513 151 0.1347 (400/2969) 0 * * Os_TE_332843 Chr4 485913 485914 + ORSgTEMT00100272 356 0.0023 (7/2994) 0 * Os_TE_332842 Os_TE_332842 Chr4 485912 485911 + NDNA1TNA_OS 334 0.0023 (7/2996) 0 * Os_TE_332843 Os_TE_332841 Chr4 485881 485880 + STOWAWAY51_OS 246 0.0037 (11/2996) 0 * Os_TE_332840 Os_TE_332840 Chr4 485875 485876 - STOWAWAY51_OS 246 0.0040 (11/2745) 0 * Os_TE_332841 Os_TE_332839 Chr4 483818 483819 + COPIA2-LTR_OS 6433 0.0010 (3/2989) 0 * * Os_TE_332838 Chr4 483787 483786 - COPIA2-LTR_OS 6433 0.0017 (5/2993) 0 * * Os_TE_332836 Chr4 483410 483411 + COPI2_LTR 4733 0.0007 (2/2986) 0 * * Os_TE_332834 Chr4 482876 482877 - ORSgTETNOOT00754 253 0.0065 (19/2923) 0 * Os_TE_332833 Os_TE_332833 Chr4 482872 482871 + ORSgTETNOOT01686 252 0.0072 (21/2919) 0 * Os_TE_332834 Os_TE_332813 Chr4 474990 474991 + OSTE33 1012 0.0007 (2/2935) 0 * Os_TE_332812 Os_TE_332812 Chr4 474981 474980 + OSTE33 1012 0.0031 (9/2943) 0 * Os_TE_332813 Os_TE_332811 Chr4 473891 473892 - SZ-25LTR 330 0.0017 (5/2998) 0 * * Os_TE_332804 Chr4 472452 472453 - COPIA2-LTR_OS 6433 0.1362 (406/2981) 0 * Os_TE_332803 Os_TE_332803 Chr4 472448 472447 + COPIA2-LTR_OS 6433 0.1405 (420/2990) 0 * Os_TE_332804 Os_TE_332800 Chr4 469519 469520 - RETRO2_LTR 12874 0.0412 (119/2887) 0 * Os_TE_332799 Os_TE_332799 Chr4 469515 469514 + SZLTR 1249 0.0244 (70/2869) 0 * Os_TE_332800 Os_TE_332771 Chr4 462680 462679 + ORSgTEMT00600272 361 0.0024 (7/2961) 0 * * Os_TE_332769 Chr4 461831 461832 - COPIA2-LTR_OS 6433 0.0003 (1/2984) 0 * Os_TE_332768 Os_TE_332768 Chr4 461827 461826 + COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_332769 Os_TE_332767 Chr4 461688 461689 + SEVERIN-2 1952 0.0010 (3/2978) 0 * * Os_TE_332756 Chr4 458781 458780 - SZ-43LTR 4039 0.2847 (842/2957) 0 * * Os_TE_332748 Chr4 456232 456233 - ORSiTEMT01300001 950 0.0598 (177/2960) 0 * Os_TE_332747 Os_TE_332747 Chr4 456227 456226 + KRISPIE 956 0.0617 (183/2967) 0 * Os_TE_332748 Os_TE_332733 Chr4 452882 447584 + SZ-62LTR 3649 0.1067 (315/2953) 1 Intact Os_TE_332728 Os_TE_332728 Chr4 447584 452882 - SZ-62LTR 3649 0.1242 (329/2648) 1 Intact Os_TE_332733 Os_TE_332727 Chr4 445948 445949 + COPIA2-LTR_OS 6433 0.0010 (3/2948) 0 * Os_TE_332726 Os_TE_332726 Chr4 445944 445943 - COPIA2-LTR_OS 6433 0.0010 (3/2984) 0 * Os_TE_332727 Os_TE_332722 Chr4 445698 445697 - RETRO2_LTR 12874 0.5860 (1731/2954) 0 * * Os_TE_332709 Chr4 442221 442222 - RIRE2_LTR 11306 0.0267 (80/2998) 0 * Os_TE_332708 Os_TE_332708 Chr4 442217 442216 + RIRE2_LTR 11306 0.0267 (80/2999) 0 * Os_TE_332709 Os_TE_332702 Chr4 440174 440173 - ORSgTEMT01600152 226 0.1704 (489/2870) 0 * * Os_TE_332701 Chr4 440171 440172 + ORSgTEMT01602181 239 0.1678 (479/2855) 0 * Os_TE_332700 Os_TE_332700 Chr4 440168 440167 - ORSgTEMT01600299 233 0.1737 (483/2781) 0 * Os_TE_332701 Os_TE_332696 Chr4 439657 439898 + ORSgTEMT01400031 216 0.1045 (312/2987) 1 Intact * Os_TE_332695 Chr4 439534 439533 - RETROSAT2LTR 12796 0.0003 (1/2995) 0 * * Os_TE_332693 Chr4 436615 436614 + ORSiTERTOOT00226 792 0.0010 (3/2996) 0 * * Os_TE_332683 Chr4 433823 433822 + TRUNCATOR2_LTR 2904 0.5339 (425/796) -1 * * Os_TE_332674 Chr4 430383 417532 - RETRO2_LTR 12874 0.1287 (385/2992) 1 Intact Os_TE_332667 Os_TE_332667 Chr4 417532 430383 + ORSgTERTOOT00009 12852 0.1265 (378/2989) 1 Intact Os_TE_332674 Os_TE_332664 Chr4 415604 415603 + STOWAWAY51_OS 246 0.0007 (2/2993) 0 * Os_TE_332663 Os_TE_332663 Chr4 415598 415599 - STOWAWAY51_OS 246 0.0007 (2/2991) 0 * Os_TE_332664 Os_TE_332661 Chr4 414291 414292 - ORSgTETNOOT02417 265 0.0027 (8/2997) 0 * Os_TE_332660 Os_TE_332660 Chr4 414289 414288 - INDITTO 263 0.0027 (8/2998) 0 * Os_TE_332661 Os_TE_332653 Chr4 407196 407195 - STOWAWAY44_OS 240 0.0003 (1/2971) 0 * * Os_TE_332650 Chr4 407076 407077 + STOWAWAY51_OS 246 0.0688 (205/2980) 0 * * Os_TE_332645 Chr4 405967 405968 - COPI2_LTR 4733 0.0003 (1/2990) 0 * Os_TE_332644 Os_TE_332644 Chr4 405963 405962 + COPI2_LTR 4733 0.0003 (1/2988) 0 * Os_TE_332645 Os_TE_332621 Chr4 399064 399065 - LINE-7_OS 7090 0.0007 (2/2988) 0 * * Os_TE_332619 Chr4 396581 396582 + MPING 430 0.0003 (1/2977) 0 * * Os_TE_332616 Chr4 395807 392449 - GYPSY-A_LTR 8951 0.1301 (390/2997) 1 Solo_LTR Os_TE_332613 Os_TE_332613 Chr4 392449 395807 + SZ-40LTR 2465 0.1284 (384/2991) 1 Intact Os_TE_332616 Os_TE_332608 Chr4 389676 389677 - MPING 430 0.0004 (1/2839) 0 * Os_TE_332607 Os_TE_332607 Chr4 389674 389673 + MPING 430 0.0004 (1/2830) 0 * Os_TE_332608 Os_TE_332597 Chr4 388353 388354 - MuDR4_OS 7610 0.0345 (80/2320) 0 * Os_TE_332596 Os_TE_332596 Chr4 388347 388346 - MuDR4_OS 7610 0.0342 (79/2312) 0 * Os_TE_332597 Os_TE_332595 Chr4 386243 386242 - STOWAWAY51_OS 246 0.0951 (282/2966) 0 * * Os_TE_332590 Chr4 384967 384966 + CASTAWAY-3 314 0.0017 (5/2975) 0 * * Os_TE_332588 Chr4 383519 383520 - RIREX_LTR 8828 0.0089 (26/2937) 0 * Os_TE_332587 Os_TE_332587 Chr4 383515 383514 + RIREX_LTR 8828 0.0862 (28/325) 0 * Os_TE_332588 Os_TE_332565 Chr4 378017 378016 - F118 179 0.0050 (11/2205) 0 * * Os_TE_332563 Chr4 377207 377206 + TWIFBIG 3567 0.0004 (1/2285) 0 * * Os_TE_332558 Chr4 376767 376768 - SEVERIN-2 1952 0.0896 (197/2199) 0 * * Os_TE_332556 Chr4 376160 376161 - COPIA2-LTR_OS 6433 0.0005 (1/2215) 0 * Os_TE_332555 Os_TE_332555 Chr4 376156 376155 + COPIA2-LTR_OS 6433 0.0005 (1/2212) 0 * Os_TE_332556 Os_TE_332554 Chr4 375775 375776 + RIRE2_LTR 11306 0.0055 (12/2194) 0 * * Os_TE_332550 Chr4 374735 374734 - TYPEU1 380 0.0018 (5/2725) 0 * * Os_TE_332533 Chr4 363654 363414 - ORSgTEMT01601592 239 0.1218 (364/2989) 0.9 Intact Os_TE_332532 Os_TE_332532 Chr4 363417 363654 - ORSgTEMT01601578 232 0.1244 (372/2990) 1 Intact Os_TE_332533 Os_TE_332524 Chr4 361889 361888 - RETRO2_LTR 12874 0.0757 (38/502) 0 * * Os_TE_332519 Chr4 360649 360648 - RETROSAT3_LTR 11537 0.0530 (28/528) 0 * * Os_TE_332518 Chr4 360646 360647 - ORSiTETNOOT00156 3648 0.0003 (1/2971) 0 * * Os_TE_332514 Chr4 353971 353972 + TESS 244 0.0180 (53/2947) 0 * Os_TE_332513 Os_TE_332513 Chr4 353964 353963 - TESS 244 0.0166 (48/2897) 0 * Os_TE_332514 Os_TE_332464 Chr4 337428 337429 + TWIFBIG 3567 0.2411 (714/2961) 0 * Os_TE_332463 Os_TE_332463 Chr4 337421 337420 - ORSiTETNOOT00216 3569 0.2285 (670/2932) 0 * Os_TE_332464 Os_TE_332451 Chr4 330733 330734 - MuDR4_OS 7610 0.0054 (16/2967) 0 * * Os_TE_332424 Chr4 317444 317445 + AMYLTP 383 0.7435 (2110/2838) 0 * Os_TE_332423 Os_TE_332423 Chr4 317436 317435 - AMYLTP 383 0.7000 (1748/2497) 0 * Os_TE_332424 Os_TE_332422 Chr4 317376 317377 + ORSgTEMT00800058 376 0.0195 (57/2926) 0 * * Os_TE_332412 Chr4 310828 310827 - MuDR3_OS 8604 0.0715 (212/2966) 0 * * Os_TE_332312 Chr4 272475 272474 - TRUNCATOR2_LTR 2904 0.0010 (3/2988) 0 * * Os_TE_332311 Chr4 271757 271758 - TRUNCATOR 2918 0.0523 (156/2982) 0 * * Os_TE_332310 Chr4 271114 271115 - ORSgTEMT02000041 194 0.0087 (26/2975) 0 * * Os_TE_332291 Chr4 266997 266998 - RIREX_LTR 8828 0.0003 (1/2975) 0 * Os_TE_332290 Os_TE_332290 Chr4 266993 266992 + RIREX_LTR 8828 0.0003 (1/2978) 0 * Os_TE_332291 Os_TE_332277 Chr4 263502 263501 + COPIA2-LTR_OS 6433 0.0003 (1/2960) 0 * * Os_TE_332276 Chr4 263316 263317 + SPMLIKE 10989 0.0003 (1/2947) 0 * Os_TE_332275 Os_TE_332275 Chr4 263314 263313 - SPMLIKE 10989 0.0003 (1/2966) 0 * Os_TE_332276 Os_TE_332263 Chr4 259700 259701 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * * Os_TE_332253 Chr4 255415 255414 + ORSgTETNOOT01219 231 0.0010 (3/2934) 0 * * Os_TE_332250 Chr4 255042 255041 - MERMITEJ 1498 0.0007 (2/2988) 0 * * Os_TE_332237 Chr4 245985 245986 + NDNA1TNA_OS 334 0.0114 (34/2980) 0 * Os_TE_332236 Os_TE_332236 Chr4 245981 245980 - NDNA1TNA_OS 334 0.0169 (38/2255) 0 * Os_TE_332237 Os_TE_332233 Chr4 245369 245943 - CLOUD-7 495 0.7872 (370/470) -1 Intact * Os_TE_332219 Chr4 235027 235026 + STOWAWAY51_OS 246 0.0007 (2/2983) 0 * Os_TE_332218 Os_TE_332218 Chr4 235021 235022 - STOWAWAY51_OS 246 0.0007 (2/2989) 0 * Os_TE_332219 Os_TE_332217 Chr4 234628 234629 + INDITTO 263 0.0202 (60/2972) 0 * Os_TE_332216 Os_TE_332216 Chr4 234626 234625 - INDITTO 263 0.0195 (58/2968) 0 * Os_TE_332217 Os_TE_332201 Chr4 230137 230136 + ORSgTEMT02400206 225 0.2459 (735/2989) 0 * Os_TE_332200 Os_TE_332200 Chr4 230135 230136 - TYPEM 227 0.2399 (713/2972) 0 * Os_TE_332201 Os_TE_332193 Chr4 219588 219587 + ORSgTETNOOT01668 244 0.0151 (45/2976) 0 * * Os_TE_332179 Chr4 215856 215857 + TWIFB1 3737 0.0003 (1/2989) 0 * * Os_TE_332173 Chr4 214940 214941 - RETRO1_LTR 8314 0.0240 (71/2956) 0 * Os_TE_332172 Os_TE_332172 Chr4 214936 214935 + RETRO2A_LTR 12895 0.0243 (69/2845) 0 * Os_TE_332173 Os_TE_332165 Chr4 212209 212210 - MPING 430 0.0188 (54/2876) 0 * Os_TE_332164 Os_TE_332164 Chr4 212207 212206 + MPING 430 0.0182 (54/2966) 0 * Os_TE_332165 Os_TE_332135 Chr4 204991 204990 - RETRO2A_LTR 12895 0.0094 (28/2990) 0 * * Os_TE_332126 Chr4 201119 201120 + TRUNCATOR 2918 0.0252 (72/2859) 0 * * Os_TE_332116 Chr4 199783 199784 - RETRO1_LTR 8314 0.1528 (456/2985) 0 * Os_TE_332115 Os_TE_332115 Chr4 199779 199778 + RETRO2A_LTR 12895 0.1524 (456/2992) 0 * Os_TE_332116 Os_TE_332101 Chr4 197631 197632 + ORSgTEMT01400011 212 0.0018 (5/2849) 0 * * Os_TE_332048 Chr4 173056 173055 - ORSgTEMT01601208 238 0.0005 (1/2187) 0 * * Os_TE_332047 Chr4 173025 173026 + RIREX_LTR 8828 0.0014 (4/2893) 0 * * Os_TE_332045 Chr4 172778 172779 + MuDR3_OS 8604 0.0840 (250/2975) 0 * Os_TE_332044 Os_TE_332044 Chr4 172770 172769 - MuDR3_OS 8604 0.0770 (227/2948) 0 * Os_TE_332045 Os_TE_332036 Chr4 171329 171330 - RIRE5-LTR_OS 6427 0.0135 (40/2971) 0 * Os_TE_332035 Os_TE_332035 Chr4 171322 171321 + RIRE5-LTR_OS 6427 0.0105 (31/2963) 0 * Os_TE_332036 Os_TE_331973 Chr4 159472 159473 - TRUNCATOR 2918 0.0017 (5/2979) 0 * * Os_TE_331972 Chr4 158824 158825 - SZ-40LTR 2465 0.0084 (25/2980) 0 * Os_TE_331971 Os_TE_331971 Chr4 158820 158819 + SZ-40LTR 2465 0.0087 (26/2982) 0 * Os_TE_331972 Os_TE_331954 Chr4 154916 154915 + RETRO2_LTR 12874 0.0137 (41/2984) 0 * * Os_TE_331863 Chr4 130888 130889 - COPIA2-LTR_OS 6433 0.0023 (7/2991) 0 * Os_TE_331862 Os_TE_331862 Chr4 130884 130883 + COPIA2-LTR_OS 6433 0.0023 (7/2991) 0 * Os_TE_331863 Os_TE_331840 Chr4 125460 125459 - MPING 430 0.0003 (1/2970) 0 * * Os_TE_331839 Chr4 125401 125402 + MPING 430 0.0007 (2/2983) 0 * * Os_TE_331826 Chr4 120913 120914 + ORSgTETNOOT01834 251 0.0057 (17/2993) 0 * Os_TE_331825 Os_TE_331825 Chr4 120911 120910 + ORSgTETNOOT01834 251 0.0057 (17/2996) 0 * Os_TE_331826 Os_TE_331799 Chr4 110600 110599 + RETROSAT2LTR 12796 0.0047 (12/2556) 0 * * Os_TE_331778 Chr4 107404 107405 + CACTA-M 1129 0.0583 (163/2797) 0 * Os_TE_331777 Os_TE_331777 Chr4 107402 107401 - ORSgTETN00200001 10994 0.0694 (197/2840) 0 * Os_TE_331778 Os_TE_331776 Chr4 107344 107345 - ORSgTETN00200001 10994 0.0080 (22/2746) 0 * * Os_TE_331749 Chr4 99772 99771 + STOWAWAY18_OS 216 0.0023 (7/2979) 0 * * Os_TE_331746 Chr4 98134 98133 + ORSgTETNOOT01834 251 0.0007 (2/2964) 0 * * Os_TE_331738 Chr4 88437 88438 - ORSiTETNOOT00200 3563 0.6651 (1899/2855) 0 * Os_TE_331737 Os_TE_331737 Chr4 88430 88429 + TWIF 586 0.6421 (1771/2758) 0.04 * Os_TE_331738 Os_TE_331722 Chr4 82649 82648 - GYPSY-A_LTR 8951 0.0430 (127/2955) 0 * * Os_TE_331721 Chr4 82349 82350 - TRUNCATOR2_LTR 2904 0.0023 (7/2985) 0 * Os_TE_331720 Os_TE_331720 Chr4 82345 82344 + ORSiCMCM00100019 2717 0.0020 (6/2937) 0 * Os_TE_331721 Os_TE_331683 Chr4 58776 58777 + ORSiOTOT00000037 220 0.0124 (37/2988) 0 * Os_TE_331682 Os_TE_331682 Chr4 58735 58734 + SEVERIN-2 1952 0.0131 (39/2975) 0 * Os_TE_331683 Os_TE_331678 Chr4 56352 56351 - RIRE2_LTR 11306 0.0007 (2/2886) 0 * * Os_TE_331582 Chr4 11903 11902 + ORSiTERTOOT00028 8600 0.0019 (5/2696) 0 * * Os_TE_495701 Chr3 36405394 36405393 + COPI2_LTR 4733 0.0004 (1/2403) 0 * * Os_TE_495675 Chr3 36394881 36394882 - RIREX_LTR 8828 0.0004 (1/2838) 0 * Os_TE_495674 Os_TE_495674 Chr3 36394877 36394876 + RIREX_LTR 8828 0.0004 (1/2788) 0 * Os_TE_495675 Os_TE_495621 Chr3 36367791 36367792 + COPI2_LTR 4733 0.0007 (2/2990) 0 * * Os_TE_495619 Chr3 36366307 36366308 - SZ-9LTR 965 0.0020 (6/2995) 0 * Os_TE_495618 Os_TE_495618 Chr3 36366303 36366302 + SZ-9LTR 965 0.0020 (6/2997) 0 * Os_TE_495619 Os_TE_495603 Chr3 36347304 36347305 + AMYLTP 383 0.2620 (783/2989) 0 * Os_TE_495602 Os_TE_495602 Chr3 36347297 36347296 - AMYLTP 383 0.2580 (767/2973) 0 * Os_TE_495603 Os_TE_495601 Chr3 36347291 36347290 + ORSgTEMT00800058 376 0.0004 (1/2276) 0 * * Os_TE_495600 Chr3 36347147 36347146 + ORSgTEMT01601591 242 0.0003 (1/2990) 0 * Os_TE_495599 Os_TE_495599 Chr3 36347141 36347142 + STOWAWAY51_OS 246 0.0003 (1/2992) 0 * Os_TE_495600 Os_TE_495594 Chr3 36343958 36343959 - SC-8_LTR 4951 0.0003 (1/2966) 0 * Os_TE_495593 Os_TE_495593 Chr3 36343954 36343953 + ORSiTERTOOT00381 4988 0.0003 (1/2961) 0 * Os_TE_495594 Os_TE_495577 Chr3 36329824 36329825 + STOWAWAY1_OS 149 0.0003 (1/2977) 0 * * Os_TE_495573 Chr3 36325073 36325072 - ORSgTEMT00101174 225 0.0003 (1/2958) 0 * * Os_TE_495524 Chr3 36291695 36291696 + FOCUS 257 0.0003 (1/2998) 0 * Os_TE_495523 Os_TE_495523 Chr3 36291693 36291692 - FOCUS 257 0.0003 (1/2997) 0 * Os_TE_495524 Os_TE_495518 Chr3 36289895 36289896 - SZ-35LTR 3853 0.0027 (8/2995) 0 * Os_TE_495517 Os_TE_495517 Chr3 36289891 36289890 + RETROSAT4_LTR 13504 0.0027 (8/2992) 0 * Os_TE_495518 Os_TE_495487 Chr3 36270247 36270248 + ORSiTERTOOT00296 5553 0.0161 (48/2990) 0 * Os_TE_495486 Os_TE_495486 Chr3 36270243 36270242 - SC-3_LTR 5748 0.0164 (49/2994) 0 * Os_TE_495487 Os_TE_495462 Chr3 36262015 36262014 + RIRE3_LTR 12054 0.0004 (1/2651) 0 * * Os_TE_495457 Chr3 36260748 36260749 - TRUNCATOR 2918 0.5342 (1595/2986) 0 * * Os_TE_495449 Chr3 36257201 36257200 + ORSgTEMT01601591 242 0.0003 (1/2956) 0 * * Os_TE_495438 Chr3 36250664 36250665 - COPI2_LTR 4733 0.0003 (1/2992) 0 * Os_TE_495437 Os_TE_495437 Chr3 36250660 36250659 + COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_495438 Os_TE_495430 Chr3 36249167 36249166 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * * Os_TE_495427 Chr3 36247935 36247936 + OSTE33 1012 0.0021 (6/2892) 0 * Os_TE_495426 Os_TE_495426 Chr3 36247926 36247925 - OSTE33 1012 0.0021 (6/2894) 0 * Os_TE_495427 Os_TE_495362 Chr3 36218439 36218440 + SC-8_LTR 4951 0.0013 (4/2984) 0 * * Os_TE_495359 Chr3 36218216 36218217 - SC-8_LTR 4951 0.0003 (1/2983) 0 * Os_TE_495358 Os_TE_495358 Chr3 36218212 36218211 + SC-8_LTR 4951 0.0003 (1/2982) 0 * Os_TE_495359 Os_TE_495261 Chr3 36176017 36176018 + ORSgTEMT01602637 232 0.0018 (5/2724) 0 * * Os_TE_495248 Chr3 36171566 36164600 - MDR2 6967 0.5749 (1496/2602) 0.47 Intact Os_TE_495247 Os_TE_495247 Chr3 36164600 36171566 + MDR2 6967 0.5563 (1393/2504) 0.88 Intact Os_TE_495248 Os_TE_495228 Chr3 36160836 36160837 + COPI2_LTR 4733 0.0003 (1/2957) 0 * Os_TE_495227 Os_TE_495227 Chr3 36160832 36160831 - COPI2_LTR 4733 0.0003 (1/2953) 0 * Os_TE_495228 Os_TE_495225 Chr3 36160310 36160311 - COPI2_LTR 4733 0.0003 (1/2982) 0 * * Os_TE_495219 Chr3 36157696 36157462 + ORSgTETNOOT00908 242 0.5177 (1539/2973) 1 Intact Os_TE_495218 Os_TE_495218 Chr3 36157462 36157692 + ORSgTETNOOT01219 231 0.5112 (1503/2940) 1 Intact Os_TE_495219 Os_TE_495212 Chr3 36155858 36155859 - RIREX_LTR 8828 0.0031 (9/2885) 0 * Os_TE_495211 Os_TE_495211 Chr3 36155854 36155853 + RIREX_LTR 8828 0.0021 (6/2904) 0 * Os_TE_495212 Os_TE_495173 Chr3 36144334 36144333 + NDNA1TNA_OS 334 0.0003 (1/2959) 0 * * Os_TE_495132 Chr3 36121599 36121600 - RIREX_LTR 8828 0.0003 (1/2996) 0 * Os_TE_495131 Os_TE_495131 Chr3 36121595 36121594 + RIREX_LTR 8828 0.0003 (1/2995) 0 * Os_TE_495132 Os_TE_495128 Chr3 36116966 36116967 + ORSiTERTOOT00381 4988 0.0003 (1/2994) 0 * Os_TE_495127 Os_TE_495127 Chr3 36116962 36116961 - SC-8_LTR 4951 0.0003 (1/2993) 0 * Os_TE_495128 Os_TE_495099 Chr3 36105037 36105036 - ORSgTEMT01601493 303 0.0017 (5/2984) 0 * Os_TE_495098 Os_TE_495098 Chr3 36105034 36105035 + ORSgTEMT01602029 239 0.0020 (6/2987) 0 * Os_TE_495099 Os_TE_495097 Chr3 36103460 36103461 + ORSgTETNOOT00908 242 0.0007 (2/2977) 0 * Os_TE_495096 Os_TE_495096 Chr3 36103455 36103454 + ORSgTETNOOT01219 231 0.0007 (2/2981) 0 * Os_TE_495097 Os_TE_495060 Chr3 36072454 36072455 + RIRE2_LTR 11306 0.0003 (1/2983) 0 * * Os_TE_495055 Chr3 36067819 36067820 + STOWAWAY9_OS 235 0.0011 (2/1815) 0 * * Os_TE_495053 Chr3 36066702 36066461 - ORSiTETNOOT00015 241 0.6390 (1885/2950) 1 Intact * Os_TE_495025 Chr3 36050434 36050435 + RIREX_LTR 8828 0.0010 (3/2983) 0 * * Os_TE_494997 Chr3 36041532 36041533 + AMYLTP 383 0.0004 (1/2722) -1 * * Os_TE_494986 Chr3 36036136 36036135 - MPING 430 0.0004 (1/2719) 0 * * Os_TE_494940 Chr3 36009567 36009568 - MPING 430 0.0003 (1/2976) 0 * * Os_TE_494902 Chr3 35979174 35979175 - OSMUD1 5028 0.0003 (1/2996) 0 * Os_TE_494901 Os_TE_494901 Chr3 35979166 35979165 - OSMUD1 5028 0.0003 (1/2994) 0 * Os_TE_494902 Os_TE_494882 Chr3 35962803 35962457 - NDNA2TNA_OS 346 0.7037 (2104/2990) 1 Intact Os_TE_494877 Os_TE_494877 Chr3 35962456 35962803 + NDNA2TNA_OS 346 0.7044 (2109/2994) 1 Intact Os_TE_494882 Os_TE_494860 Chr3 35960735 35960736 - MPING 430 0.0034 (10/2945) 0 * Os_TE_494859 Os_TE_494859 Chr3 35960733 35960732 + MPING 430 0.0034 (10/2944) 0 * Os_TE_494860 Os_TE_494857 Chr3 35959220 35959221 - INDITTO 263 0.0007 (2/2998) 0 * Os_TE_494856 Os_TE_494856 Chr3 35959218 35959217 + INDITTO 263 0.0007 (2/2995) 0 * Os_TE_494857 Os_TE_494835 Chr3 35947517 35947518 - COPI2_LTR 4733 0.0023 (7/2980) 0 * Os_TE_494834 Os_TE_494834 Chr3 35947513 35947512 + COPI2_LTR 4733 0.0030 (9/2980) 0 * Os_TE_494835 Os_TE_494831 Chr3 35947065 35947066 + COPI2_LTR 4733 0.0154 (46/2989) 0 * Os_TE_494830 Os_TE_494830 Chr3 35947061 35947060 - COPI2_LTR 4733 0.0147 (44/2987) 0 * Os_TE_494831 Os_TE_494828 Chr3 35946879 35946880 - ORSgTEMT00900099 250 0.0020 (6/2984) 0 * * Os_TE_494807 Chr3 35942018 35942017 + ORSgTEMT01602181 239 0.0320 (95/2973) 0 * Os_TE_494806 Os_TE_494806 Chr3 35942015 35942016 + ORSgTEMT01602181 239 0.0362 (108/2987) 0 * Os_TE_494807 Os_TE_494800 Chr3 35940991 35940990 - ORSgTEMT00502231 144 0.0003 (1/2928) 0 * * Os_TE_494783 Chr3 35926795 35926794 + ORSgTEMT01601591 242 0.0003 (1/2994) 0 * Os_TE_494782 Os_TE_494782 Chr3 35926789 35926790 + STOWAWAY51_OS 246 0.0003 (1/2992) 0 * Os_TE_494783 Os_TE_494773 Chr3 35923440 35923439 + ORSgTEMT01601934 207 0.0020 (6/2999) 0 * * Os_TE_494771 Chr3 35922633 35921669 + SZ-9LTR 965 0.1117 (331/2963) 1 Intact Os_TE_494770 Os_TE_494770 Chr3 35921669 35922633 - SZ-9LTR 965 0.1093 (324/2963) 1 Intact Os_TE_494771 Os_TE_494769 Chr3 35921381 35921382 - ORSgTEMT01601493 303 0.0007 (2/2904) 0 * * Os_TE_494764 Chr3 35919944 35919945 - ORSgTEMT00900169 237 0.0017 (5/2993) 0 * Os_TE_494763 Os_TE_494763 Chr3 35919939 35919938 - ORSgTEMT00901345 248 0.0020 (6/2996) 0 * Os_TE_494764 Os_TE_494697 Chr3 35895516 35895515 - STOWAWAY51_OS 246 0.0003 (1/2984) 0 * * Os_TE_494694 Chr3 35894622 35894623 + INDITTO 263 0.0374 (112/2992) 0 * Os_TE_494693 Os_TE_494693 Chr3 35894620 35894619 - INDITTO 263 0.0375 (112/2990) 0 * Os_TE_494694 Os_TE_494683 Chr3 35890182 35890183 + TWIF 586 0.0003 (1/2969) 0 * * Os_TE_494650 Chr3 35875703 35875702 + OSTE9 421 0.0020 (6/2986) 0 * * Os_TE_494643 Chr3 35872975 35872976 - MUDRN1_OS 764 0.5932 (1767/2979) 0 * Os_TE_494642 Os_TE_494642 Chr3 35872967 35872966 + MUDRN2_OS 756 0.5893 (1746/2963) 0 * Os_TE_494643 Os_TE_494611 Chr3 35863711 35863712 + TWIF 586 0.0003 (1/2998) 0 * Os_TE_494610 Os_TE_494610 Chr3 35863704 35863703 - ORSiTETNOOT00134 607 0.0003 (1/2999) 0 * Os_TE_494611 Os_TE_494596 Chr3 35855436 35855437 + TWIF 586 0.0054 (16/2975) 0 * * Os_TE_494588 Chr3 35853641 35853642 + SZ-46LTR 3360 0.0010 (3/2990) 0 * Os_TE_494587 Os_TE_494587 Chr3 35853637 35853636 - SZ-46LTR 3360 0.0010 (3/2992) 0 * Os_TE_494588 Os_TE_494585 Chr3 35847973 35853139 - ORSiTERTOOT00333 4719 0.1113 (333/2993) 1 Intact * Os_TE_494571 Chr3 35833887 35833625 - INDITTO 263 0.1482 (327/2207) 1 Intact Os_TE_494570 Os_TE_494570 Chr3 35833625 35833887 + INDITTO 263 0.1084 (325/2997) 1 Intact Os_TE_494571 Os_TE_494547 Chr3 35821314 35821315 - SZ-55_LTR 10318 0.0003 (1/2974) 0 * Os_TE_494546 Os_TE_494546 Chr3 35821310 35821309 + SZ-55_LTR 10318 0.0003 (1/2974) 0 * Os_TE_494547 Os_TE_494543 Chr3 35820105 35820104 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * * Os_TE_494535 Chr3 35814729 35814730 - COPI2_LTR 4733 0.0003 (1/2996) 0 * * Os_TE_494508 Chr3 35809644 35809643 - FOCUS 257 0.0234 (69/2949) 0 * * Os_TE_494488 Chr3 35803671 35803419 - ORSgTEMT00900099 250 0.7597 (2229/2934) 1 Intact Os_TE_494484 Os_TE_494484 Chr3 35803421 35803666 - ORSgTEMT00901345 248 0.7730 (2196/2841) 1 Intact Os_TE_494488 Os_TE_494478 Chr3 35802403 35802404 - RPO_OS 1983 0.5754 (1504/2614) 0 * * Os_TE_494477 Chr3 35802365 35802364 - ORSgTEMT00900034 246 0.2785 (767/2754) 0 * * Os_TE_494468 Chr3 35800867 35801268 + OLO24 345 0.7749 (2231/2879) 1 Intact * Os_TE_494466 Chr3 35799624 35799625 - COPI2_LTR 4733 0.0164 (37/2254) 0 * Os_TE_494465 Os_TE_494465 Chr3 35799620 35799619 + COPI2_LTR 4733 0.0147 (33/2250) 0 * Os_TE_494466 Os_TE_494454 Chr3 35795591 35795590 + ORSgTEMT01701672 139 0.2590 (764/2950) 0 * * Os_TE_494453 Chr3 35794123 35794124 + SC-8_LTR 4951 0.0105 (31/2945) 0 * Os_TE_494452 Os_TE_494452 Chr3 35794119 35794118 - SC-8_LTR 4951 0.0104 (31/2984) 0 * Os_TE_494453 Os_TE_494449 Chr3 35791170 35791171 - STOWAWAY17_OS 259 0.2684 (801/2984) 0 * Os_TE_494448 Os_TE_494448 Chr3 35791169 35791168 + ORSgTETNOOT00670 249 0.2699 (805/2983) 0 * Os_TE_494449 Os_TE_494420 Chr3 35779146 35779147 - RETROSAT4_LTR 13504 0.3033 (858/2829) 0 * Os_TE_494419 Os_TE_494419 Chr3 35779142 35779141 + RETROSAT4_LTR 13504 0.2288 (594/2596) 0 * Os_TE_494420 Os_TE_494417 Chr3 35778065 35778066 + SZ-9LTR 965 0.0035 (10/2859) 0 * * Os_TE_494387 Chr3 35765622 35765623 + ORSgTEMT01601488 239 0.0030 (9/2974) 0 * * Os_TE_494384 Chr3 35764796 35763651 + ORSgTETN00200005 1121 0.5421 (1615/2979) 1 Intact Os_TE_494382 Os_TE_494382 Chr3 35763647 35764793 + CACTA-B 1103 0.5299 (1549/2923) 1 Intact Os_TE_494384 Os_TE_494380 Chr3 35763581 35763580 - SZ-9LTR 965 0.0010 (3/2970) 0 * * Os_TE_494370 Chr3 35762035 35762036 + HARB-1_OS 5166 0.0007 (2/2993) 0 * Os_TE_494369 Os_TE_494369 Chr3 35762033 35762032 + HARB-1_OS 5166 0.0007 (2/2995) 0 * Os_TE_494370 Os_TE_494366 Chr3 35761300 35761301 + MERMITE18B 1306 0.0054 (16/2971) 0 * * Os_TE_494348 Chr3 35750102 35750101 - TYPEU1 380 0.0023 (7/2992) 0 * * Os_TE_494343 Chr3 35748618 35748619 + ORSgTEMT01701101 133 0.2428 (679/2796) 0 * * Os_TE_494339 Chr3 35746880 35746879 - SZ-54_LTR 5203 0.0010 (3/2995) 0 * * Os_TE_494338 Chr3 35745190 35745189 + TWIFB1 3737 0.0003 (1/2999) 0 * * Os_TE_494336 Chr3 35744614 35744467 - UNIQUE 158 0.7276 (2174/2988) 1 Intact Os_TE_494335 Os_TE_494335 Chr3 35744464 35744606 + ORSiTEMT03300001 145 0.7244 (2168/2993) 1 Intact Os_TE_494336 Os_TE_494330 Chr3 35736722 35736721 - ORSgTEMT01700507 154 0.0032 (7/2195) 0 * * Os_TE_494318 Chr3 35734477 35734145 + NDNA1TNA_OS 334 0.6907 (1487/2153) 1 Intact Os_TE_494315 Os_TE_494315 Chr3 35734140 35734480 + ORSgTEMT00101674 340 0.8663 (1276/1473) 1 Intact Os_TE_494318 Os_TE_494314 Chr3 35732273 35732274 + RETROSAT4_LTR 13504 0.0050 (11/2195) 0 * Os_TE_494313 Os_TE_494313 Chr3 35732269 35732268 - SZ-35LTR 3853 0.0046 (10/2166) 0 * Os_TE_494314 Os_TE_494227 Chr3 35671212 35671213 + SC-8_LTR 4951 0.0030 (9/2983) 0 * Os_TE_494226 Os_TE_494226 Chr3 35671208 35671207 - SC-8_LTR 4951 0.0027 (8/2989) 0 * Os_TE_494227 Os_TE_494210 Chr3 35663244 35663245 + RIRE5-LTR_OS 6427 0.0020 (6/2989) 0 * * Os_TE_494206 Chr3 35662421 35662422 - SC-8_LTR 4951 0.0003 (1/2991) 0 * Os_TE_494205 Os_TE_494205 Chr3 35662417 35662416 + SC-8_LTR 4951 0.0003 (1/2990) 0 * Os_TE_494206 Os_TE_494202 Chr3 35658737 35658736 - COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * * Os_TE_494193 Chr3 35649742 35649743 + SC-8_LTR 4951 0.0007 (2/2992) 0 * Os_TE_494192 Os_TE_494192 Chr3 35649738 35649737 - SC-8_LTR 4951 0.0007 (2/2995) 0 * Os_TE_494193 Os_TE_494188 Chr3 35647146 35647147 - RETRO1_LTR 8314 0.1149 (343/2986) 0 * Os_TE_494187 Os_TE_494187 Chr3 35647142 35647141 + RETRO2A_LTR 12895 0.1167 (349/2990) 0 * Os_TE_494188 Os_TE_494171 Chr3 35635265 35635266 + MUDR_N7_OS 1283 0.1253 (375/2992) 0 * * Os_TE_494155 Chr3 35627602 35627603 + ORSiTERTOOT00404 4839 0.0026 (6/2333) 0 * * Os_TE_494118 Chr3 35602501 35602502 - MuDR2_OS 6770 0.0288 (84/2921) 0 * * Os_TE_494096 Chr3 35597683 35597684 + ORSiTERTOOT00226 792 0.0003 (1/2972) 0 * * Os_TE_494092 Chr3 35597209 35597208 - INDITTO 263 0.0034 (10/2928) 0 * * Os_TE_494078 Chr3 35595705 35595704 - MuDR4_OS 7610 0.0384 (113/2939) 0 * * Os_TE_494074 Chr3 35594097 35594098 + ORSiTERTOOT00296 5553 0.0003 (1/2993) 0 * * Os_TE_494068 Chr3 35591463 35591464 - SC-3_LTR 5748 0.0017 (5/2986) 0 * Os_TE_494067 Os_TE_494067 Chr3 35591459 35591458 + ORSiTERTOOT00296 5553 0.0017 (5/2990) 0 * Os_TE_494068 Os_TE_494049 Chr3 35585991 35585992 - CACTA-H 1152 0.1566 (466/2975) 0 * Os_TE_494048 Os_TE_494048 Chr3 35585989 35585988 + CACTA-H 1152 0.1554 (461/2967) 0 * Os_TE_494049 Os_TE_494047 Chr3 35585574 35585575 - INDITTO 263 0.1318 (393/2981) 0 * Os_TE_494046 Os_TE_494046 Chr3 35585572 35585571 + INDITTO 263 0.1328 (396/2981) 0 * Os_TE_494047 Os_TE_494044 Chr3 35583769 35583770 - COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * * Os_TE_494042 Chr3 35583295 35583294 - MuDR-5_OS 17471 0.0094 (28/2988) 0 * * Os_TE_494003 Chr3 35574144 35574143 - COPIA2-LTR_OS 6433 0.0003 (1/2955) 0 * * Os_TE_494002 Chr3 35573700 35573699 - WUJI 257 0.0020 (6/2959) 0 * * Os_TE_494001 Chr3 35573433 35573434 + ORSgTETNOOT00908 242 0.2891 (853/2951) 0 * Os_TE_494000 Os_TE_494000 Chr3 35573426 35573425 + ORSgTETNOOT01219 231 0.2948 (871/2955) 0 * Os_TE_494001 Os_TE_493981 Chr3 35562247 35562246 + CASTAWAY 364 0.0034 (10/2956) 0 * * Os_TE_493973 Chr3 35560279 35560280 - RIREX_LTR 8828 0.0007 (2/2712) 0 * * Os_TE_493957 Chr3 35552194 35552195 - SC-8_LTR 4951 0.0003 (1/2862) 0 * Os_TE_493956 Os_TE_493956 Chr3 35552190 35552189 + SC-8_LTR 4951 0.0004 (1/2845) 0 * Os_TE_493957 Os_TE_493929 Chr3 35523330 35523329 + Cassandra_OS-LTR 764 0.1597 (479/2999) 0 * * Os_TE_493928 Chr3 35523327 35523328 - Cassandra_OS-LTR 764 0.1570 (470/2994) 0 * Os_TE_493927 Os_TE_493927 Chr3 35523323 35523322 + Cassandra_OS-LTR 764 0.1598 (479/2997) 0 * Os_TE_493928 Os_TE_493913 Chr3 35516189 35516188 - STOWAWAY51_OS 246 0.0023 (7/2986) 0 * Os_TE_493912 Os_TE_493912 Chr3 35516183 35516184 + STOWAWAY51_OS 246 0.0020 (6/2982) 0 * Os_TE_493913 Os_TE_493890 Chr3 35508393 35508394 - INDITTO 263 0.0003 (1/2988) 0 * Os_TE_493889 Os_TE_493889 Chr3 35508391 35508390 + INDITTO 263 0.0003 (1/2990) 0 * Os_TE_493890 Os_TE_493888 Chr3 35508242 35508243 + ORSgTETNOOT02316 263 0.0067 (20/2987) 0 * Os_TE_493887 Os_TE_493887 Chr3 35508240 35508239 - INDITTO 263 0.0064 (19/2990) 0 * Os_TE_493888 Os_TE_493886 Chr3 35508017 35508018 + RIREX_LTR 8828 0.0018 (5/2856) 0 * Os_TE_493885 Os_TE_493885 Chr3 35508013 35508012 - RIREX_LTR 8828 0.0017 (5/2995) 0 * Os_TE_493886 Os_TE_493884 Chr3 35507806 35507807 - CASTAWAY 364 0.1337 (277/2072) 0 * Os_TE_493883 Os_TE_493883 Chr3 35507805 35507804 + CASTAWAY 364 0.1683 (501/2976) 0 * Os_TE_493884 Os_TE_493882 Chr3 35507782 35506943 - MUDRN1_OS 764 0.1272 (354/2784) 1 Intact * Os_TE_493878 Chr3 35505789 35505788 - COPIA2-LTR_OS 6433 0.0004 (1/2832) 0 * * Os_TE_493877 Chr3 35504980 35504981 - RIREX_LTR 8828 0.0010 (3/2995) 0 * Os_TE_493876 Os_TE_493876 Chr3 35504976 35504975 + RIREX_LTR 8828 0.0010 (3/2993) 0 * Os_TE_493877 Os_TE_493875 Chr3 35504897 35504898 + NDNA1TNA_OS 334 0.0087 (26/2995) 0 * Os_TE_493874 Os_TE_493874 Chr3 35504894 35504893 - NDNA1TNA_OS 334 0.0097 (29/2995) 0 * Os_TE_493875 Os_TE_493868 Chr3 35502409 35502410 + ORSiTERTOOT00296 5553 0.0013 (4/2991) 0 * Os_TE_493867 Os_TE_493867 Chr3 35502405 35502404 - SC-3_LTR 5748 0.0010 (3/2992) 0 * Os_TE_493868 Os_TE_493841 Chr3 35481916 35481917 - SC-3_LTR 5748 0.0003 (1/2993) 0 * * Os_TE_493836 Chr3 35480616 35480617 + ORSgTEMT00700017 386 0.0057 (17/2978) 0 * Os_TE_493835 Os_TE_493835 Chr3 35480608 35480607 + MUDRN5_OS 374 0.0064 (19/2978) 0 * Os_TE_493836 Os_TE_493827 Chr3 35476714 35476715 + ORSiTERTOOT00402 2660 0.0003 (1/2999) 0 * * Os_TE_493826 Chr3 35476447 35476446 + TOS17LTR 138 0.0087 (26/2995) 0 * * Os_TE_493792 Chr3 35456765 35456766 - SC-8_LTR 4951 0.0003 (1/2991) 0 * Os_TE_493791 Os_TE_493791 Chr3 35456761 35456760 + SC-8_LTR 4951 0.0003 (1/2990) 0 * Os_TE_493792 Os_TE_493788 Chr3 35453000 35452999 + ORSgTEMT01601591 242 0.0003 (1/2958) 0 * * Os_TE_493782 Chr3 35451590 35451591 - SC-8_LTR 4951 0.0007 (2/2997) 0 * Os_TE_493781 Os_TE_493781 Chr3 35451586 35451585 + SC-8_LTR 4951 0.0007 (2/2997) 0 * Os_TE_493782 Os_TE_493761 Chr3 35443734 35443735 + MDR2 6967 0.1590 (475/2987) 0 * Os_TE_493760 Os_TE_493760 Chr3 35443726 35443725 + MDR2 6967 0.1311 (382/2914) 0 * Os_TE_493761 Os_TE_493749 Chr3 35432596 35431926 - SZ-52_LTR 13107 0.5560 (1663/2991) 1 Solo_LTR * Os_TE_493735 Chr3 35422354 35422355 + COPI2_LTR 4733 0.0013 (4/2986) 0 * Os_TE_493734 Os_TE_493734 Chr3 35422350 35422349 - COPI2_LTR 4733 0.0010 (3/2985) 0 * Os_TE_493735 Os_TE_493729 Chr3 35418672 35418673 + ORSgTEMT02400206 225 0.0034 (8/2340) 0 * * Os_TE_493714 Chr3 35411426 35411427 - GYPSY-A_LTR 8951 0.0004 (1/2846) 0 * Os_TE_493713 Os_TE_493713 Chr3 35411422 35411421 + GYPSY-A_LTR 8951 0.0004 (1/2833) 0 * Os_TE_493714 Os_TE_493709 Chr3 35407958 35407957 - STOWAWAY45_OS 266 0.0007 (2/2841) 0 * Os_TE_493708 Os_TE_493708 Chr3 35407955 35407956 + STOWAWAY45_OS 266 0.0007 (2/2838) 0 * Os_TE_493709 Os_TE_493702 Chr3 35404007 35404008 + OSTONOR1_LTR 6440 0.0007 (2/2996) 0 * Os_TE_493701 Os_TE_493701 Chr3 35404003 35404002 - ORSiTERT00100062 5674 0.0007 (2/2995) 0 * Os_TE_493702 Os_TE_493697 Chr3 35402815 35402816 + MUDRN5_OS 374 0.0004 (1/2787) 0 * * Os_TE_493686 Chr3 35400922 35400923 - RIREX_LTR 8828 0.0007 (2/2943) 0 * Os_TE_493685 Os_TE_493685 Chr3 35400918 35400917 + RIREX_LTR 8828 0.0003 (1/2935) 0 * Os_TE_493686 Os_TE_493678 Chr3 35399056 35399057 + CACTA-H 1152 0.0748 (224/2994) 0 * Os_TE_493677 Os_TE_493677 Chr3 35399054 35399053 - CACTA-H 1152 0.0728 (218/2994) 0 * Os_TE_493678 Os_TE_493675 Chr3 35398262 35398263 - MuDR2_OS 6770 0.0818 (175/2140) 0 * * Os_TE_493663 Chr3 35392161 35392162 - OLO24 345 0.0762 (226/2967) 0 * Os_TE_493662 Os_TE_493662 Chr3 35392159 35392158 + OLO24 345 0.0767 (228/2974) 0 * Os_TE_493663 Os_TE_493661 Chr3 35391329 35391330 + OSTONOR1_LTR 6440 0.0003 (1/2991) 0 * * Os_TE_493649 Chr3 35365181 35365180 - MuDR3_OS 8604 0.3349 (953/2846) 0 * * Os_TE_493643 Chr3 35360754 35360755 + TOS17LTR 138 0.1073 (316/2945) 0 * Os_TE_493642 Os_TE_493642 Chr3 35360750 35360749 - TOS17LTR 138 0.1190 (355/2983) 0 * Os_TE_493643 Os_TE_493630 Chr3 35355624 35355623 - ORSgTEMT02400179 221 0.0739 (217/2938) 0 * * Os_TE_493625 Chr3 35355233 35355094 + ORSgTEMT00500201 140 0.2027 (595/2935) 1 Intact Os_TE_493624 Os_TE_493624 Chr3 35355091 35355227 - ORSgTETNOOT00544 147 0.2050 (601/2931) 1 Intact Os_TE_493625 Os_TE_493623 Chr3 35352902 35352901 + ORSgTEMT01602250 243 0.8048 (2350/2920) 0 * * Os_TE_493622 Chr3 35351687 35351508 - ORSgTEMT01701882 154 0.2017 (604/2995) 1 Intact * Os_TE_493616 Chr3 35349703 35349704 + SZ-9LTR 965 0.2151 (640/2975) 0 * Os_TE_493615 Os_TE_493615 Chr3 35349699 35349698 - SZ-9LTR 965 0.2186 (650/2973) 0 * Os_TE_493616 Os_TE_493612 Chr3 35347400 35347399 + STOWAWAY50_OS 174 0.0158 (10/632) 0 * Os_TE_493611 Os_TE_493611 Chr3 35347397 35347398 - ORSgTEMT01701882 154 0.8086 (2420/2993) 0 * Os_TE_493612 Os_TE_493604 Chr3 35343298 35343297 - SC-3_LTR 5748 0.4009 (1198/2988) 0 * * Os_TE_493590 Chr3 35329304 35331179 + MERMITEA 1710 0.2336 (591/2530) -1 Intact * Os_TE_493585 Chr3 35324378 35324379 + SZ-46LTR 3360 0.0007 (2/2977) 0 * Os_TE_493584 Os_TE_493584 Chr3 35324374 35324373 - SZ-46LTR 3360 0.0007 (2/2988) 0 * Os_TE_493585 Os_TE_493582 Chr3 35324317 35324084 - STOWAWAY9_OS 235 0.1995 (596/2987) 1 Intact Os_TE_493579 Os_TE_493579 Chr3 35324080 35324289 + ORSgTEMT01400024 215 0.2019 (604/2992) 1 Intact Os_TE_493582 Os_TE_493578 Chr3 35324017 35324016 + F569 228 0.8122 (2431/2993) 0 * * Os_TE_493571 Chr3 35319843 35319842 + ORSgTEMT00900388 252 0.0783 (231/2951) 0 * * Os_TE_493570 Chr3 35319091 35319092 - ORSgTETNOOT01760 137 0.0736 (220/2988) 0 * * Os_TE_493563 Chr3 35312495 35312496 - RIRE2_LTR 11306 0.0003 (1/2995) 0 * Os_TE_493562 Os_TE_493562 Chr3 35312491 35312490 + RIRE2_LTR 11306 0.0003 (1/2996) 0 * Os_TE_493563 Os_TE_493559 Chr3 35311862 35311861 + STOWAWAY50_OS 174 0.0003 (1/2989) 0 * * Os_TE_493558 Chr3 35311792 35311793 + RIREX_LTR 8828 0.0003 (1/2990) 0 * * Os_TE_493557 Chr3 35311742 35311743 + COPI2_LTR 4733 0.0003 (1/2990) 0 * * Os_TE_493555 Chr3 35311401 35311400 - AMYLTP 383 0.0007 (2/2985) 0 * * Os_TE_493489 Chr3 35293575 35293576 + COPIA2-LTR_OS 6433 0.0007 (2/2992) 0 * Os_TE_493488 Os_TE_493488 Chr3 35293571 35293570 - COPIA2-LTR_OS 6433 0.0009 (2/2323) 0 * Os_TE_493489 Os_TE_493459 Chr3 35284982 35284983 - OSTE24 683 0.0003 (1/2959) 0 * * Os_TE_493437 Chr3 35280489 35280490 - INDITTO 263 0.0003 (1/2994) 0 * Os_TE_493436 Os_TE_493436 Chr3 35280488 35280487 + INDITTO 263 0.0003 (1/2992) 0 * Os_TE_493437 Os_TE_493435 Chr3 35280138 35280139 + MPING 430 0.0107 (32/2994) 0 * Os_TE_493434 Os_TE_493434 Chr3 35280136 35280135 - MPING 430 0.0104 (31/2989) 0 * Os_TE_493435 Os_TE_493413 Chr3 35277749 35277750 - ENSPM4_OS 11610 0.0010 (3/2980) 0 * * Os_TE_493411 Chr3 35276687 35276451 + ORSgTEMT01601122 212 0.7604 (2259/2971) 1 Intact * Os_TE_493405 Chr3 35275055 35275056 - ORSgTEMT00901345 248 0.2246 (640/2850) 0 * Os_TE_493404 Os_TE_493404 Chr3 35275054 35275053 - DITTO 244 0.2489 (740/2973) 0 * Os_TE_493405 Os_TE_493400 Chr3 35273815 35273602 + ORSgTEMT01601122 212 0.7580 (2258/2979) 1 Intact * Os_TE_493396 Chr3 35273338 35273594 - ORSgTEMT01600224 243 0.8751 (2186/2498) 1 Intact Os_TE_493395 Os_TE_493395 Chr3 35273310 35273074 - ORSgTEMT01601605 240 0.8450 (2180/2580) 1 Intact Os_TE_493396 Os_TE_493394 Chr3 35273304 35273074 + ORSgTEMT01602235 236 0.8214 (2185/2660) 1 Intact Os_TE_493393 Os_TE_493393 Chr3 35273074 35273310 + ORSgTEMT01600196 241 0.7573 (2256/2979) 1 Intact Os_TE_493394 Os_TE_493392 Chr3 35272337 35272098 + ORSgTEMT01601983 238 0.7534 (2151/2855) 1 Intact Os_TE_493391 Os_TE_493391 Chr3 35272098 35272337 + ORSgTEMT01601983 238 0.7348 (1934/2632) 1 Intact Os_TE_493392 Os_TE_493382 Chr3 35270944 35270945 - COPI2_LTR 4733 0.0049 (11/2254) 0 * * Os_TE_493381 Chr3 35270926 35271231 - ORSgTEMT00100291 345 0.7360 (2191/2977) 1 Intact * Os_TE_493362 Chr3 35265751 35265752 + INDITTO 263 0.0285 (81/2844) 0 * Os_TE_493361 Os_TE_493361 Chr3 35265749 35265748 - INDITTO 263 0.0328 (84/2559) 0 * Os_TE_493362 Os_TE_493359 Chr3 35265668 35265410 - ORSgTEMT00101174 225 0.7485 (2143/2863) 1 Intact Os_TE_493356 Os_TE_493356 Chr3 35265408 35265666 - STOWAWAY10_OS 259 0.8565 (2178/2543) 1 Intact Os_TE_493359 Os_TE_493350 Chr3 35265056 35265380 + ORSgTEMT00100291 345 0.6928 (1556/2246) 1 Intact * Os_TE_493339 Chr3 35259380 35259379 + ORSgTEMT01400003 213 0.0007 (2/2973) 0 * Os_TE_493338 Os_TE_493338 Chr3 35259379 35259380 - STOWAWAY9_OS 235 0.0007 (2/2965) 0 * Os_TE_493339 Os_TE_493326 Chr3 35250038 35250039 - STOWAWAY36_OS 268 0.1115 (275/2467) 0 * Os_TE_493325 Os_TE_493325 Chr3 35250022 35250021 - LIER 339 0.0372 (85/2288) 0 * Os_TE_493326 Os_TE_493320 Chr3 35249072 35249071 + ORSgTEMT01602004 234 0.0330 (76/2302) 0 * Os_TE_493319 Os_TE_493319 Chr3 35249069 35249070 + ORSgTEMT01601036 240 0.0355 (82/2307) 0 * Os_TE_493320 Os_TE_493317 Chr3 35247108 35247107 - ORSgTEMT01400011 212 0.0278 (80/2881) 0 * * Os_TE_493303 Chr3 35245009 35245010 + SEVERIN-2 1952 0.0032 (6/1851) 0 * * Os_TE_493293 Chr3 35240914 35240817 + ORSgTEMT01701432 152 0.7476 (2162/2892) 1 Intact * Os_TE_493288 Chr3 35240170 35240376 - STOWAWAY51_OS 246 0.7329 (2187/2984) 1 Intact * Os_TE_493283 Chr3 35236572 35236573 + TRUNCATOR2_LTR 2904 0.0309 (75/2426) 0 * Os_TE_493282 Os_TE_493282 Chr3 35236568 35236567 - TRUNCATOR2_LTR 2904 0.0374 (84/2243) 0 * Os_TE_493283 Os_TE_493276 Chr3 35234575 35234298 + ORSgTEMT02900126 301 0.7619 (2272/2982) 1 Intact Os_TE_493274 Os_TE_493274 Chr3 35234298 35234575 + ORSgTEMT02900076 336 0.8144 (2295/2818) 1 Intact Os_TE_493276 Os_TE_493272 Chr3 35233743 35233744 + RIREX_LTR 8828 0.0003 (1/2968) 0 * Os_TE_493271 Os_TE_493271 Chr3 35233739 35233738 - RIREX_LTR 8828 0.0004 (1/2292) 0 * Os_TE_493272 Os_TE_493270 Chr3 35233622 35233621 + STOWAWAY51_OS 246 0.0004 (1/2295) 0 * Os_TE_493269 Os_TE_493269 Chr3 35233616 35233617 + ORSgTEMT01601591 242 0.0004 (1/2299) 0 * Os_TE_493270 Os_TE_493255 Chr3 35223099 35222938 - ORSgTEMT01700693 155 0.8217 (2295/2793) 1 Intact * Os_TE_493249 Chr3 35222668 35222667 - ORSgTEMT02400246 177 0.0003 (1/2989) 0 * Os_TE_493248 Os_TE_493248 Chr3 35222664 35222665 - TYPEM 227 0.0003 (1/2987) 0 * Os_TE_493249 Os_TE_493236 Chr3 35212036 35212037 - ORSgTETNOOT00754 253 0.0696 (206/2959) 0 * Os_TE_493235 Os_TE_493235 Chr3 35212031 35212030 - ORSgTETNOOT00477 252 0.0707 (209/2957) 0 * Os_TE_493236 Os_TE_493234 Chr3 35211470 35211471 - MuDR2_OS 6770 0.0026 (7/2727) 0 * Os_TE_493233 Os_TE_493233 Chr3 35211461 35211460 + MuDR2_OS 6770 0.0120 (33/2743) 0 * Os_TE_493234 Os_TE_493219 Chr3 35205267 35205268 + SZ-40LTR 2465 0.0007 (2/2977) 0 * Os_TE_493218 Os_TE_493218 Chr3 35205263 35205262 - GYPSY-A_LTR 8951 0.0007 (2/2988) 0 * Os_TE_493219 Os_TE_493205 Chr3 35201419 35201420 - ECR 394 0.0020 (6/2961) 0 * * Os_TE_493168 Chr3 35170811 35170812 + TELIA 141 0.0003 (1/2983) 0 * Os_TE_493167 Os_TE_493167 Chr3 35170803 35170802 - TELIA 141 0.0003 (1/2984) 0 * Os_TE_493168 Os_TE_493148 Chr3 35165479 35165480 + RETRO1_LTR 8314 0.0207 (44/2128) 0 * * Os_TE_493134 Chr3 35163256 35163257 + RIREX_LTR 8828 0.0007 (2/2976) 0 * Os_TE_493133 Os_TE_493133 Chr3 35163252 35163251 - RIREX_LTR 8828 0.0007 (2/2968) 0 * Os_TE_493134 Os_TE_493097 Chr3 35152912 35152911 + ORSgTETNOOT01522 239 0.0064 (19/2992) 0 * * Os_TE_493089 Chr3 35150135 35150134 - DS-RICE2N 613 0.0007 (2/2980) 0 * * Os_TE_493087 Chr3 35149881 35149880 + STOWAWAY51_OS 246 0.0007 (2/2988) 0 * * Os_TE_493037 Chr3 35129544 35129543 - STOWAWAY11_OS 292 0.0007 (2/2770) 0 * * Os_TE_493036 Chr3 35128060 35128059 + ORSgTETNOOT01930 140 0.0010 (3/2992) 0 * Os_TE_493035 Os_TE_493035 Chr3 35128059 35128060 - ORSgTEMT00501356 145 0.0010 (3/2994) 0 * Os_TE_493036 Os_TE_493033 Chr3 35126303 35126304 - SC-8_LTR 4951 0.0003 (1/2986) 0 * Os_TE_493032 Os_TE_493032 Chr3 35126299 35126298 + SC-8_LTR 4951 0.0003 (1/2988) 0 * Os_TE_493033 Os_TE_493024 Chr3 35117805 35117806 - SZ-58LTR 114 0.0010 (3/2973) 0 * Os_TE_493023 Os_TE_493023 Chr3 35117801 35117800 + SZ-58LTR 114 0.0010 (3/2980) 0 * Os_TE_493024 Os_TE_492976 Chr3 35099412 35099413 - AMYLTP 383 0.0020 (6/2992) 0 * Os_TE_492975 Os_TE_492975 Chr3 35099404 35099403 + AMYLTP 383 0.0017 (5/2993) 0 * Os_TE_492976 Os_TE_492953 Chr3 35083438 35083437 - STOWAWAY51_OS 246 0.0867 (258/2975) 0 * Os_TE_492952 Os_TE_492952 Chr3 35083435 35083436 - STOWAWAY51_OS 246 0.0871 (259/2975) 0 * Os_TE_492953 Os_TE_492933 Chr3 35068155 35068156 + SC-4_LTR 5218 0.0013 (4/2993) 0 * * Os_TE_492929 Chr3 35066113 35066114 + COPI2_LTR 4733 0.0010 (3/2993) 0 * Os_TE_492928 Os_TE_492928 Chr3 35066109 35066108 - COPI2_LTR 4733 0.0010 (3/2992) 0 * Os_TE_492929 Os_TE_492894 Chr3 35054246 35054247 + ORSiTERTOOT00402 2660 0.0003 (1/2977) 0 * Os_TE_492893 Os_TE_492893 Chr3 35054242 35054241 - ORSiTERTOOT00402 2660 0.0003 (1/2978) 0 * Os_TE_492894 Os_TE_492869 Chr3 35045620 35045621 + RIREX_LTR 8828 0.0234 (70/2989) 0 * Os_TE_492868 Os_TE_492868 Chr3 35045616 35045615 - RIREX_LTR 8828 0.0244 (73/2989) 0 * Os_TE_492869 Os_TE_492860 Chr3 35039240 35039241 - SC-8_LTR 4951 0.0010 (3/2995) 0 * Os_TE_492859 Os_TE_492859 Chr3 35039236 35039235 + SC-8_LTR 4951 0.0007 (2/2997) 0 * Os_TE_492860 Os_TE_492850 Chr3 35034570 35034571 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_492849 Os_TE_492849 Chr3 35034566 35034565 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_492850 Os_TE_492836 Chr3 35027785 35027786 - INDITTO 263 0.0369 (103/2791) 0 * Os_TE_492835 Os_TE_492835 Chr3 35027782 35027781 - ORSgTETNOOT01072 229 0.0388 (108/2780) 0 * Os_TE_492836 Os_TE_492828 Chr3 35021173 35021172 - TRUNCATOR 2918 0.0371 (108/2914) 0 * Os_TE_492827 Os_TE_492827 Chr3 35021172 35021173 + TRUNCATOR 2918 0.0389 (113/2905) 0 * Os_TE_492828 Os_TE_492812 Chr3 35015842 35015841 + ORSgTEMT00700017 386 0.0004 (1/2422) -1 * Os_TE_492811 Os_TE_492811 Chr3 35015834 35015835 - ORSgTEMT00700002 381 0.0004 (1/2380) 0 * Os_TE_492812 Os_TE_492784 Chr3 34999653 34999654 - F569 228 0.0003 (1/2974) 0 * * Os_TE_492779 Chr3 34998741 34998742 + RETRO2_LTR 12874 0.0405 (110/2714) 0 * Os_TE_492778 Os_TE_492778 Chr3 34998737 34998736 - RETRO2_LTR 12874 0.0423 (117/2766) 0 * Os_TE_492779 Os_TE_492768 Chr3 34997914 34997915 + ORSgTEMT01602051 240 0.0010 (3/2965) 0 * * Os_TE_492762 Chr3 34988282 34988283 - INDITTO 263 0.0010 (3/2980) 0 * Os_TE_492761 Os_TE_492761 Chr3 34988280 34988279 + INDITTO 263 0.0010 (3/2981) 0 * Os_TE_492762 Os_TE_492728 Chr3 34974659 34974658 + ORSgTEMT01601591 242 0.0003 (1/2997) 0 * * Os_TE_492697 Chr3 34959475 34959476 - OSTE20 496 0.0007 (2/2851) 0 * Os_TE_492696 Os_TE_492696 Chr3 34959471 34959470 - OSTE20 496 0.0014 (4/2840) 0 * Os_TE_492697 Os_TE_492680 Chr3 34947488 34952194 + SC-10_LTR 4920 0.6746 (2021/2996) 1 Intact * Os_TE_492672 Chr3 34946881 34946882 - LINE-4_OS 3662 0.2323 (694/2988) 0 * * Os_TE_492641 Chr3 34930889 34931133 - INDITTO 263 0.6360 (1901/2989) 1 Intact * Os_TE_492637 Chr3 34929706 34929707 + OSTE33 1012 0.0217 (65/2994) 0 * Os_TE_492636 Os_TE_492636 Chr3 34929697 34929696 - OSTE33 1012 0.0211 (63/2991) 0 * Os_TE_492637 Os_TE_492629 Chr3 34926841 34926842 + ORSgTEMT00300063 413 0.0348 (103/2956) 0 * * Os_TE_492622 Chr3 34917708 34917709 - RETRO1_LTR 8314 0.0144 (43/2993) 0 * Os_TE_492621 Os_TE_492621 Chr3 34917704 34917703 + RETRO2A_LTR 12895 0.0147 (44/2993) 0 * Os_TE_492622 Os_TE_492606 Chr3 34915448 34915449 - STOWAWAY51_OS 246 0.0147 (44/2999) 0 * * Os_TE_492601 Chr3 34912703 34912702 + NDNA1TNA_OS 334 0.2495 (695/2786) 0 * * Os_TE_492600 Chr3 34912301 34912302 + TWIFB1 3737 0.0003 (1/2947) 0 * * Os_TE_492582 Chr3 34906097 34906098 + TEOS1 476 0.0018 (5/2840) 0 * * Os_TE_492577 Chr3 34902867 34902868 - TNR2A 152 0.0003 (1/2986) 0 * Os_TE_492576 Os_TE_492576 Chr3 34902851 34902850 + TNR2A 152 0.0003 (1/2983) 0 * Os_TE_492577 Os_TE_492575 Chr3 34902809 34902810 - MPING 430 0.0003 (1/2984) 0 * Os_TE_492574 Os_TE_492574 Chr3 34902807 34902806 + MPING 430 0.0003 (1/2988) 0 * Os_TE_492575 Os_TE_492551 Chr3 34891352 34891148 - COWARD-3 221 0.7697 (2303/2992) 1 Intact * Os_TE_492540 Chr3 34890693 34890966 + ORSgTEMT01900048 299 0.7672 (2258/2943) 1 Intact * Os_TE_492539 Chr3 34890677 34890678 - HARB-1_OS 5166 0.0017 (5/2955) 0 * Os_TE_492538 Os_TE_492538 Chr3 34890675 34890674 + HARB-1_OS 5166 0.0018 (4/2285) 0 * Os_TE_492539 Os_TE_492532 Chr3 34888650 34888388 + ORSgTETNOOT00221 261 0.7835 (2269/2896) 1 Intact Os_TE_492529 Os_TE_492529 Chr3 34888388 34888650 + INDITTO 263 0.8392 (2249/2680) 1 Intact Os_TE_492532 Os_TE_492514 Chr3 34886521 34886687 + ORSgTEMT00502363 147 0.7825 (2303/2943) 1 Intact * Os_TE_492510 Chr3 34884951 34884800 - ORSgTEMT00501512 150 0.7950 (2312/2908) 1 Intact * Os_TE_492508 Chr3 34884797 34884948 + UNIQUE 158 0.7191 (2143/2980) 1 Intact * Os_TE_492489 Chr3 34880618 34880617 + STOWAWAY51_OS 246 0.0003 (1/2930) 0 * Os_TE_492488 Os_TE_492488 Chr3 34880615 34880616 - STOWAWAY51_OS 246 0.0003 (1/2923) 0 * Os_TE_492489 Os_TE_492483 Chr3 34879915 34879704 - DITAIL 271 0.7746 (2265/2924) 1 Intact * Os_TE_492480 Chr3 34879717 34879718 + ORSgTEMT01601591 242 0.0009 (2/2313) 0 * * Os_TE_492479 Chr3 34879604 34879605 - STOWAWAY11_OS 292 0.2427 (720/2967) 0 * Os_TE_492478 Os_TE_492478 Chr3 34879603 34879602 + STOWAWAY11_OS 292 0.2448 (727/2970) 0 * Os_TE_492479 Os_TE_492459 Chr3 34873127 34873128 - TELIA 141 0.0004 (1/2316) 0 * Os_TE_492458 Os_TE_492458 Chr3 34873119 34873118 + TELIA 141 0.0004 (1/2620) 0 * Os_TE_492459 Os_TE_492457 Chr3 34872911 34872912 - STOWAWAY9_OS 235 0.0035 (8/2309) 0 * * Os_TE_492455 Chr3 34872249 34872248 + MERMITEB 1610 0.0034 (10/2922) 0 * * Os_TE_492449 Chr3 34867913 34867914 - F524 291 0.2497 (740/2963) 0 * * Os_TE_492447 Chr3 34867761 34867760 + MuDR2_OS 6770 0.0010 (3/2910) 0 * * Os_TE_492437 Chr3 34861953 34861954 - RETRO1_LTR 8314 0.0027 (8/2949) 0 * Os_TE_492436 Os_TE_492436 Chr3 34861949 34861948 + RETRO2A_LTR 12895 0.0027 (8/2959) 0 * Os_TE_492437 Os_TE_492422 Chr3 34855749 34854696 - YIREN 905 0.4625 (1381/2986) 1 Intact Os_TE_492421 Os_TE_492421 Chr3 34854696 34855749 + YIREN 905 0.4685 (1397/2982) 1 Intact Os_TE_492422 Os_TE_492420 Chr3 34854541 34854542 + INDITTO 263 0.5420 (1601/2954) 0 * Os_TE_492419 Os_TE_492419 Chr3 34854539 34854538 + ORSgTETNOOT02406 265 0.5474 (1634/2985) 0 * Os_TE_492420 Os_TE_492418 Chr3 34854044 34854045 - SZ-55_LTR 10318 0.0020 (6/2995) 0 * Os_TE_492417 Os_TE_492417 Chr3 34854040 34854039 + SZ-55_LTR 10318 0.0042 (6/1430) 0 * Os_TE_492418 Os_TE_492416 Chr3 34853210 34853211 + OSTONOR1_LTR 6440 0.0139 (20/1441) 0 * Os_TE_492415 Os_TE_492415 Chr3 34853206 34853205 - ORSiTERT00100062 5674 0.0072 (20/2773) 0 * Os_TE_492416 Os_TE_492414 Chr3 34852725 34852724 - ORSgTERT00201385 8846 0.0003 (1/2964) 0 * * Os_TE_492410 Chr3 34850652 34829933 + RETRO3_LTR 12751 0.4576 (1356/2963) 1 Intact Os_TE_492379 Os_TE_492379 Chr3 34829933 34850652 - RETRO3_LTR 12751 0.4586 (1362/2970) 1 Intact Os_TE_492410 Os_TE_492378 Chr3 34829839 34829840 - ORSgTEMT03800066 376 0.0020 (6/2982) 0 * Os_TE_492377 Os_TE_492377 Chr3 34829837 34829836 + BUHUI 375 0.0017 (5/2983) 0 * Os_TE_492378 Os_TE_492374 Chr3 34829150 34829022 - ORSgTEMT00501393 149 0.4863 (1384/2846) 1 Intact * Os_TE_492369 Chr3 34827129 34827130 + RIREX_LTR 8828 0.0007 (2/2990) 0 * Os_TE_492368 Os_TE_492368 Chr3 34827125 34827124 - RIREX_LTR 8828 0.0003 (1/2992) 0 * Os_TE_492369 Os_TE_492356 Chr3 34817160 34816068 - COPIA2-LTR_OS 6433 0.6246 (1867/2989) 1 Solo_LTR Os_TE_492355 Os_TE_492355 Chr3 34816068 34817161 + COPIA2-LTR_OS 6433 0.6274 (1866/2974) 1 Solo_LTR Os_TE_492356 Os_TE_492353 Chr3 34813759 34813758 + ORSiTERTOOT00402 2660 0.0003 (1/2976) 0 * * Os_TE_492345 Chr3 34808699 34808698 + ORSgTEMT00900230 250 0.1260 (358/2841) 0 * * Os_TE_492326 Chr3 34804371 34804372 + ORSgTEMT00600376 329 0.0020 (6/2955) 0 * Os_TE_492325 Os_TE_492325 Chr3 34804368 34804367 + ORSgTEMT00600272 361 0.0003 (1/2958) 0 * Os_TE_492326 Os_TE_492324 Chr3 34804036 34804035 - TYPEM 227 0.0003 (1/2988) 0 * Os_TE_492323 Os_TE_492323 Chr3 34804035 34804036 - ORSgTEMT02400246 177 0.0003 (1/2986) 0 * Os_TE_492324 Os_TE_492322 Chr3 34803758 34803757 - ORSgTEMT01400010 213 0.0024 (7/2941) 0 * Os_TE_492321 Os_TE_492321 Chr3 34803755 34803756 + ORSgTEMT01400031 216 0.0017 (5/2953) 0 * Os_TE_492322 Os_TE_492312 Chr3 34801707 34801706 + ORSgTEMT01601122 212 0.3865 (1155/2988) 0 * * Os_TE_492298 Chr3 34798361 34798362 + SZ-54_LTR 5203 0.3618 (1041/2877) 0 * * Os_TE_492292 Chr3 34791778 34791779 + ORSgTEMT01600227 232 0.3858 (1154/2991) 0 * Os_TE_492291 Os_TE_492291 Chr3 34791775 34791774 - ORSgTEMT01601834 234 0.3630 (1058/2915) 0 * Os_TE_492292 Os_TE_492286 Chr3 34789085 34789086 - STOWAWAY51_OS 246 0.0003 (1/2858) 0 * Os_TE_492285 Os_TE_492285 Chr3 34789081 34789080 - ORSgTEMT00600304 361 0.0020 (6/2935) 0 * Os_TE_492286 Os_TE_492284 Chr3 34788850 34788849 + SINE1OS 127 0.3719 (1084/2915) 0 * * Os_TE_492280 Chr3 34788521 34788522 + ORSgTETNOOT01692 249 0.1830 (524/2863) 0 * Os_TE_492279 Os_TE_492279 Chr3 34788518 34788517 + ORSgTETNOOT01531 255 0.1772 (514/2901) 0 * Os_TE_492280 Os_TE_492270 Chr3 34781031 34781032 + COPI2_LTR 4733 0.0003 (1/2988) 0 * Os_TE_492269 Os_TE_492269 Chr3 34781027 34781026 - COPI2_LTR 4733 0.0003 (1/2981) 0 * Os_TE_492270 Os_TE_492260 Chr3 34777582 34777581 - ORSgTETNOOT01243 137 0.0020 (6/2956) 0 * * Os_TE_492247 Chr3 34774395 34774394 + ORSgTETNOOT00908 242 0.0013 (4/2994) 0 * * Os_TE_492235 Chr3 34766120 34766121 - RETROSAT2LTRA 3112 0.0007 (1/1404) -1 * * Os_TE_492220 Chr3 34755034 34755035 - RIRE2_LTR 11306 0.0624 (185/2967) 0 * Os_TE_492219 Os_TE_492219 Chr3 34755030 34755029 - ORSgTERT00201216 11284 0.0610 (181/2965) 0 * Os_TE_492220 Os_TE_492213 Chr3 34752973 34752972 - RIRE3_LTR 12054 0.0003 (1/2995) 0 * * Os_TE_492212 Chr3 34752651 34752652 - GYPSY-A_LTR 8951 0.0003 (1/2989) 0 * * Os_TE_492179 Chr3 34736041 34736040 + ORSgTEMT02400034 225 0.3908 (1160/2968) 0 * Os_TE_492178 Os_TE_492178 Chr3 34736036 34736037 - ORSgTEMT02400246 177 0.3793 (1111/2929) 0 * Os_TE_492179 Os_TE_492152 Chr3 34723567 34723568 - COPI2_LTR 4733 0.0007 (2/2980) 0 * Os_TE_492151 Os_TE_492151 Chr3 34723563 34723562 + COPI2_LTR 4733 0.0007 (2/2976) 0 * Os_TE_492152 Os_TE_492148 Chr3 34721663 34721664 + TWIFBIG 3567 0.0014 (4/2891) 0 * Os_TE_492147 Os_TE_492147 Chr3 34721656 34721655 - ORSiTETNOOT00216 3569 0.0007 (2/2922) 0 * Os_TE_492148 Os_TE_492146 Chr3 34721556 34721557 - COPIA2-LTR_OS 6433 0.0004 (1/2751) 0 * Os_TE_492145 Os_TE_492145 Chr3 34721552 34721551 + COPIA2-LTR_OS 6433 0.0003 (1/2980) 0 * Os_TE_492146 Os_TE_492127 Chr3 34706971 34706970 - SZ-67LTR 1540 0.0003 (1/2941) 0 * * Os_TE_492126 Chr3 34706063 34706062 - SZ-40LTR 2465 0.0003 (1/2957) 0 * * Os_TE_492122 Chr3 34705120 34705119 + ORSgTETNOOT01834 251 0.1475 (441/2989) 0 * * Os_TE_492084 Chr3 34696356 34696357 + YOUREN 286 0.0003 (1/2860) 0 * * Os_TE_492083 Chr3 34694808 34694809 + ORSiTERT00100080 6173 0.0003 (1/2992) 0 * Os_TE_492082 Os_TE_492082 Chr3 34694803 34694802 - ORSiTERT00100080 6173 0.0003 (1/2989) 0 * Os_TE_492083 Os_TE_492070 Chr3 34689549 34689550 - F770 284 0.0013 (4/2995) 0 * Os_TE_492069 Os_TE_492069 Chr3 34689547 34689546 + F770 284 0.0013 (4/2996) 0 * Os_TE_492070 Os_TE_492061 Chr3 34687224 34687223 - ORSgTETNOOT00754 253 0.0003 (1/2980) 0 * * Os_TE_492058 Chr3 34684973 34684974 + SC-8_LTR 4951 0.0013 (4/2995) 0 * Os_TE_492057 Os_TE_492057 Chr3 34684968 34684967 - SC-8_LTR 4951 0.0013 (4/2995) 0 * Os_TE_492058 Os_TE_492046 Chr3 34678368 34678369 + AMYLTP 383 0.0259 (77/2972) 0 * Os_TE_492045 Os_TE_492045 Chr3 34678360 34678359 - AMYLTP 383 0.0249 (74/2967) 0 * Os_TE_492046 Os_TE_492038 Chr3 34674866 34674867 - LINE-4_OS 3662 0.0771 (231/2995) 0 * * Os_TE_492030 Chr3 34666593 34666592 + TRSA_OS 353 0.0003 (1/2995) 0 * * Os_TE_492011 Chr3 34657521 34657522 + NDNA1TNA_OS 334 0.0003 (1/2998) 0 * Os_TE_492010 Os_TE_492010 Chr3 34657519 34657518 - NDNA1TNA_OS 334 0.0003 (1/2999) 0 * Os_TE_492011 Os_TE_491992 Chr3 34654785 34654786 - ORSiTERTOOT00441 4741 0.0003 (1/2994) 0 * * Os_TE_491990 Chr3 34653874 34653875 - MDR3 6978 0.0024 (7/2933) 0 * Os_TE_491989 Os_TE_491989 Chr3 34653868 34653867 - MDR3 6978 0.0024 (7/2936) 0 * Os_TE_491990 Os_TE_491985 Chr3 34651560 34651561 + COPIA1-LTR_OS 9292 0.0026 (3/1133) 0 * * Os_TE_491980 Chr3 34646584 34646583 - ORSiTERTOOT00348 13055 0.0009 (1/1125) 0 * * Os_TE_491974 Chr3 34643039 34643040 - COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_491973 Os_TE_491973 Chr3 34643035 34643034 + COPIA2-LTR_OS 6433 0.0003 (1/2956) 0 * Os_TE_491974 Os_TE_491972 Chr3 34642750 34642951 + COWARD-3 221 0.3704 (1107/2989) 1 Intact * Os_TE_491969 Chr3 34640858 34640706 - ORSgTEMT01701302 154 0.3700 (1100/2973) 1 Intact * Os_TE_491963 Chr3 34638643 34638450 - ORSgTEMT01701348 105 0.7613 (1014/1332) 1 Intact Os_TE_491958 Os_TE_491958 Chr3 34638450 34638638 + ORSgTEMT01701115 144 0.3318 (991/2987) 1 Intact Os_TE_491963 Os_TE_491953 Chr3 34636346 34636744 - ORSiTERTOOT00050 497 0.8846 (1020/1153) 1 Intact * Os_TE_491951 Chr3 34635281 34635282 - RETROSAT2LTRA 3112 0.0183 (54/2951) 0 * Os_TE_491950 Os_TE_491950 Chr3 34635277 34635276 + RETROSAT2LTRA 3112 0.0323 (96/2974) 0 * Os_TE_491951 Os_TE_491940 Chr3 34619845 34619844 - SC-8_LTR 4951 0.0003 (1/2988) 0 * * Os_TE_491927 Chr3 34608858 34608857 - RETRO2_LTR 12874 0.0439 (117/2667) 0 * * Os_TE_491913 Chr3 34601757 34601756 - MPING 430 0.0003 (1/2990) 0 * * Os_TE_491912 Chr3 34601638 34601637 + AMYLTP 383 0.0151 (45/2985) 0 * * Os_TE_491905 Chr3 34592974 34592545 + MPING 430 0.0673 (201/2987) 1 Intact Os_TE_491904 Os_TE_491904 Chr3 34592545 34592974 - MPING 430 0.0676 (202/2987) 1 Intact Os_TE_491905 Os_TE_491901 Chr3 34590581 34590582 - NDNA1TNA_OS 334 0.0003 (1/2946) 0 * * Os_TE_491882 Chr3 34588330 34588329 + COPIA2-LTR_OS 6433 0.0010 (3/2935) 0 * * Os_TE_491871 Chr3 34586555 34586556 + ORSgTEMT01601591 242 0.0027 (8/2947) 0 * * Os_TE_491863 Chr3 34583403 34583404 - SEVERIN-2 1952 0.3825 (1117/2920) 0 * Os_TE_491862 Os_TE_491862 Chr3 34583400 34583399 + SEVERIN-2 1952 0.4093 (1108/2707) 0 * Os_TE_491863 Os_TE_491861 Chr3 34583397 34583806 - TYPEG 427 0.6302 (1844/2926) 1 Intact * Os_TE_491849 Chr3 34579735 34579734 - DNAUN1_OS 408 0.0757 (226/2984) 0 * * Os_TE_491835 Chr3 34572813 34572812 + RETRO2_LTR 12874 0.1349 (403/2988) 0 * * Os_TE_491809 Chr3 34568638 34568639 + RETRO2A_LTR 12895 0.0443 (129/2912) 0 * Os_TE_491808 Os_TE_491808 Chr3 34568634 34568633 - RETRO1_LTR 8314 0.0432 (126/2916) 0 * Os_TE_491809 Os_TE_491807 Chr3 34568550 34568551 + ORSgTETNOOT00908 242 0.0003 (1/2977) 0 * * Os_TE_491792 Chr3 34560930 34560931 + MPING 430 0.0003 (1/2887) 0 * Os_TE_491791 Os_TE_491791 Chr3 34560928 34560927 - MPING 430 0.0003 (1/2880) 0 * Os_TE_491792 Os_TE_491780 Chr3 34552709 34551573 + CACTA-B 1103 0.3784 (1120/2960) 1 Intact * Os_TE_491748 Chr3 34540911 34540912 - COPI2_LTR 4733 0.0537 (161/2998) 0 * Os_TE_491747 Os_TE_491747 Chr3 34540907 34540906 + COPI2_LTR 4733 0.0537 (161/2997) 0 * Os_TE_491748 Os_TE_491741 Chr3 34532521 34532522 + TWIFBIG 3567 0.0271 (81/2994) 0 * Os_TE_491740 Os_TE_491740 Chr3 34532514 34532513 - ORSiTETNOOT00216 3569 0.0241 (72/2989) 0 * Os_TE_491741 Os_TE_491730 Chr3 34527734 34527733 - SC-8_LTR 4951 0.0003 (1/2994) 0 * * Os_TE_491723 Chr3 34519102 34519101 + ORSgTEMT01601591 242 0.0023 (7/2997) 0 * Os_TE_491722 Os_TE_491722 Chr3 34519096 34519097 + STOWAWAY51_OS 246 0.0023 (7/2997) 0 * Os_TE_491723 Os_TE_491704 Chr3 34515062 34515063 + TESS 244 0.0571 (170/2976) 0 * Os_TE_491703 Os_TE_491703 Chr3 34515055 34515054 - TESS 244 0.0606 (181/2989) 0 * Os_TE_491704 Os_TE_491691 Chr3 34513441 34513442 + TESS 244 0.0222 (66/2976) 0 * Os_TE_491690 Os_TE_491690 Chr3 34513434 34513433 - TESS 244 0.0225 (67/2976) 0 * Os_TE_491691 Os_TE_491683 Chr3 34511298 34511297 + ORSgTEMT01601591 242 0.0003 (1/2991) 0 * Os_TE_491682 Os_TE_491682 Chr3 34511292 34511293 + STOWAWAY51_OS 246 0.0004 (1/2685) 0 * Os_TE_491683 Os_TE_491681 Chr3 34511271 34511272 - INDITTO 263 0.4797 (1431/2983) 0 * Os_TE_491680 Os_TE_491680 Chr3 34511270 34511269 + ORSgTETNOOT02213 263 0.4843 (1449/2992) 0 * Os_TE_491681 Os_TE_491679 Chr3 34511001 34511000 - SZ-33LTR 575 0.0003 (1/2943) 0 * * Os_TE_491677 Chr3 34509875 34509876 + AMYLTP 383 0.0003 (1/2997) 0 * * Os_TE_491672 Chr3 34507665 34507664 - ORSgTEMT00501758 147 0.0233 (70/2998) 0 * Os_TE_491671 Os_TE_491671 Chr3 34507664 34507665 - ORSgTEMT00502478 130 0.0227 (68/2998) 0 * Os_TE_491672 Os_TE_491648 Chr3 34497196 34497197 + ORSgTEMT00100531 325 0.5019 (1291/2572) 0 * * Os_TE_491642 Chr3 34496938 34496939 + ORSgTEMT01601122 212 0.0460 (129/2803) 0 * * Os_TE_491631 Chr3 34493266 34493265 + NDNA1TNA_OS 334 0.4819 (1441/2990) 0 * * Os_TE_491628 Chr3 34487774 34487773 - COPIA1-LTR_OS 9292 0.0017 (5/2931) 0 * * Os_TE_491619 Chr3 34483834 34483835 - ORSiTERTOOT00367 5639 0.0003 (1/2985) 0 * Os_TE_491618 Os_TE_491618 Chr3 34483830 34483829 + ORSiTERTOOT00367 5639 0.0003 (1/2986) 0 * Os_TE_491619 Os_TE_491615 Chr3 34483113 34483112 - SNAP-OL3 189 0.0027 (8/2910) 0 * * Os_TE_491603 Chr3 34480237 34480238 - OSTE20 496 0.0526 (152/2888) 0 * Os_TE_491602 Os_TE_491602 Chr3 34480233 34480232 - OSTE20 496 0.0591 (170/2876) 0 * Os_TE_491603 Os_TE_491590 Chr3 34474400 34474399 + ORSgTEMT01400009 212 0.0030 (9/2991) 0 * Os_TE_491589 Os_TE_491589 Chr3 34474394 34474395 - ORSgTEMT01400014 209 0.0027 (8/2991) 0 * Os_TE_491590 Os_TE_491570 Chr3 34468050 34468051 + STOLAB 312 0.0027 (8/2995) 0 * Os_TE_491569 Os_TE_491569 Chr3 34468048 34468047 - STOLAB 312 0.0027 (8/2996) 0 * Os_TE_491570 Os_TE_491559 Chr3 34466859 34466858 + STOWAWAY51_OS 246 0.0017 (5/2999) 0 * Os_TE_491558 Os_TE_491558 Chr3 34466853 34466854 - STOWAWAY51_OS 246 0.0017 (5/2989) 0 * Os_TE_491559 Os_TE_491557 Chr3 34466629 34466630 + NDNA1TNA_OS 334 0.0003 (1/2994) 0 * Os_TE_491556 Os_TE_491556 Chr3 34466627 34466626 - NDNA1TNA_OS 334 0.0003 (1/2994) 0 * Os_TE_491557 Os_TE_491539 Chr3 34463793 34463794 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * * Os_TE_491532 Chr3 34461999 34462000 - ORSgTEMT00501653 149 0.0027 (8/2986) 0 * * Os_TE_491525 Chr3 34461370 34461371 + NDNA1TNA_OS 334 0.0023 (7/2990) 0 * * Os_TE_491520 Chr3 34460102 34460101 + ORSgTEMT01701591 154 0.0003 (1/2868) 0 * * Os_TE_491517 Chr3 34454379 34454380 - COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * * Os_TE_491515 Chr3 34452845 34452846 + STOWAWAY50_OS 174 0.0288 (86/2991) 0 * * Os_TE_491514 Chr3 34451531 34451532 + ORSgTETNOOT01998 254 0.0003 (1/2995) 0 * Os_TE_491513 Os_TE_491513 Chr3 34451529 34451528 - ORSgTETNOOT00754 253 0.0003 (1/2998) 0 * Os_TE_491514 Os_TE_491503 Chr3 34445255 34445256 + ORSgTEMT00901798 232 0.0218 (65/2985) 0 * * Os_TE_491500 Chr3 34444478 34444479 + ORSgTEMT01900027 302 0.0240 (62/2583) 0 * * Os_TE_491497 Chr3 34440510 34440511 + TESS 244 0.0027 (8/2993) 0 * Os_TE_491496 Os_TE_491496 Chr3 34440501 34440500 + ORSgTETNOOT00072 203 0.0027 (8/2993) 0 * Os_TE_491497 Os_TE_491492 Chr3 34438487 34438488 + CASGRANDA 465 0.0221 (63/2857) 0 * * Os_TE_491483 Chr3 34428368 34428367 - COPI2_LTR 4733 0.0004 (1/2671) 0 * * Os_TE_491478 Chr3 34426932 34426933 + ORSgTEMT00500864 109 0.0024 (7/2938) 0 * * Os_TE_491475 Chr3 34425743 34425742 + STOWAWAY21_OS 243 0.5397 (1611/2985) 0.9 * * Os_TE_491457 Chr3 34420533 34420532 + ORSgTEMT01700636 156 0.0220 (65/2951) 0 * * Os_TE_491448 Chr3 34419699 34419700 + INDITTO 263 0.0250 (75/2998) 0 * Os_TE_491447 Os_TE_491447 Chr3 34419697 34419696 - INDITTO 263 0.0240 (72/2999) 0 * Os_TE_491448 Os_TE_491442 Chr3 34416889 34416890 + ORSiTERTOOT00296 5553 0.0003 (1/2993) 0 * Os_TE_491441 Os_TE_491441 Chr3 34416885 34416884 - SC-3_LTR 5748 0.0003 (1/2989) 0 * Os_TE_491442 Os_TE_491440 Chr3 34416463 34416464 - SETARIA1 1293 0.0017 (5/2977) 0 * Os_TE_491439 Os_TE_491439 Chr3 34416455 34416454 + SETARIA1 1293 0.0017 (5/2975) 0 * Os_TE_491440 Os_TE_491422 Chr3 34406466 34402484 - RETROSAT4_LTR 13504 0.3782 (1130/2988) 1 Solo_LTR Os_TE_491416 Os_TE_491416 Chr3 34402484 34406466 + RETROSAT4_LTR 13504 0.4366 (1063/2435) 1 Solo_LTR Os_TE_491422 Os_TE_491405 Chr3 34396907 34396906 - STOWAWAY44_OS 240 0.0202 (60/2977) 0 * * Os_TE_491401 Chr3 34395948 34395949 + ORSgTETNOOT00317 139 0.0229 (66/2888) 0 * Os_TE_491400 Os_TE_491400 Chr3 34395946 34395945 + ORSgTETNOOT01139 147 0.0234 (67/2868) 0 * Os_TE_491401 Os_TE_491399 Chr3 34395771 34395770 + ORSgTEMT00101341 314 0.4029 (1180/2929) 0 * Os_TE_491398 Os_TE_491398 Chr3 34395767 34395768 - NDNA1TNA_OS 334 0.3951 (1177/2979) 0 * Os_TE_491399 Os_TE_491397 Chr3 34395598 34395599 + RIREX_LTR 8828 0.0077 (23/2992) 0 * Os_TE_491396 Os_TE_491396 Chr3 34395594 34395593 - RIREX_LTR 8828 0.0077 (23/2989) 0 * Os_TE_491397 Os_TE_491382 Chr3 34390733 34390734 - ORSgTEMT00502257 142 0.0211 (63/2986) 0 * * Os_TE_491381 Chr3 34389883 34389884 - AMYLTP 383 0.0010 (3/2996) 0 * Os_TE_491380 Os_TE_491380 Chr3 34389874 34389873 + AMYLTP 383 0.0013 (4/2996) 0 * Os_TE_491381 Os_TE_491342 Chr3 34377776 34377775 + ORSgTETNOOT00908 242 0.0192 (57/2962) 0 * * Os_TE_491291 Chr3 34367421 34367422 + EXPLORER 210 0.6148 (1663/2705) 0 * * Os_TE_491288 Chr3 34365550 34365549 - STOWAWAY51_OS 246 0.0003 (1/2999) 0 * Os_TE_491287 Os_TE_491287 Chr3 34365544 34365545 + STOWAWAY51_OS 246 0.0003 (1/2999) 0 * Os_TE_491288 Os_TE_491263 Chr3 34361588 34361589 + NDNA1TNA_OS 334 0.0262 (78/2975) 0 * Os_TE_491262 Os_TE_491262 Chr3 34361586 34361585 - NDNA1TNA_OS 334 0.0242 (72/2972) 0 * Os_TE_491263 Os_TE_491257 Chr3 34357874 34357875 + OSTE20 496 0.0229 (67/2932) 0 * Os_TE_491256 Os_TE_491256 Chr3 34357870 34357869 - OSTE20 496 0.0230 (68/2959) 0 * Os_TE_491257 Os_TE_491236 Chr3 34353778 34353779 - COPIA2-LTR_OS 6433 0.0007 (2/2955) 0 * Os_TE_491235 Os_TE_491235 Chr3 34353774 34353773 + COPIA2-LTR_OS 6433 0.0003 (1/2955) 0 * Os_TE_491236 Os_TE_491227 Chr3 34352776 34352775 - RIREX_LTR 8828 0.0272 (77/2832) 0 * * Os_TE_491224 Chr3 34351330 34351331 + MuDR2_OS 6770 0.0003 (1/2945) 0 * Os_TE_491223 Os_TE_491223 Chr3 34351322 34351321 - MuDR2_OS 6770 0.0007 (2/2938) 0 * Os_TE_491224 Os_TE_491213 Chr3 34345395 34345394 + ORSgTETNOOT00908 242 0.0003 (1/2993) 0 * * Os_TE_491204 Chr3 34340886 34340887 - COPIA2-LTR_OS 6433 0.0007 (2/2956) 0 * Os_TE_491203 Os_TE_491203 Chr3 34340882 34340881 + COPIA2-LTR_OS 6433 0.0007 (2/2936) 0 * Os_TE_491204 Os_TE_491198 Chr3 34337663 34337662 - WANDERER 232 0.4556 (1364/2994) 0 * * Os_TE_491194 Chr3 34334769 34334770 + OLO24 345 0.0245 (72/2940) 0 * Os_TE_491193 Os_TE_491193 Chr3 34334767 34334766 - OLO24 345 0.0282 (76/2693) 0 * Os_TE_491194 Os_TE_491192 Chr3 34334697 34334696 + TWIFB1 3737 0.0003 (1/2873) 0 * * Os_TE_491190 Chr3 34334578 34334341 - ORSgTETNOOT01106 231 0.3887 (1096/2820) 1 Intact * Os_TE_491177 Chr3 34326700 34326701 - RETRO2_LTR 12874 0.0253 (75/2970) 0 * Os_TE_491176 Os_TE_491176 Chr3 34326696 34326695 + RETRO2_LTR 12874 0.0247 (74/2997) 0 * Os_TE_491177 Os_TE_491173 Chr3 34324813 34324812 - STOWAWAY11_OS 292 0.0011 (3/2665) 0 * * Os_TE_491166 Chr3 34319754 34319753 + STOWAWAY51_OS 246 0.0007 (2/2995) 0 * Os_TE_491165 Os_TE_491165 Chr3 34319748 34319749 + ORSgTEMT01601591 242 0.0007 (2/2999) 0 * Os_TE_491166 Os_TE_491164 Chr3 34319556 34319557 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_491163 Os_TE_491163 Chr3 34319552 34319551 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_491164 Os_TE_491159 Chr3 34318269 34318270 + ORSgTETNOOT01219 231 0.0398 (119/2992) 0 * * Os_TE_491154 Chr3 34313892 34313893 - STOWAWAY51_OS 246 0.0021 (6/2876) 0 * * Os_TE_491126 Chr3 34302359 34302360 - ORSiTERTOOT00402 2660 0.0003 (1/2978) 0 * Os_TE_491125 Os_TE_491125 Chr3 34302355 34302354 + ORSiTERTOOT00402 2660 0.0003 (1/2986) 0 * Os_TE_491126 Os_TE_491118 Chr3 34297314 34297315 - JOUZHENA 607 0.5837 (1705/2921) 0 * * Os_TE_491045 Chr3 34280863 34280864 + RETRO2A_LTR 12895 0.0584 (175/2996) 0 * Os_TE_491044 Os_TE_491044 Chr3 34280859 34280858 - RETRO1_LTR 8314 0.0584 (175/2998) 0 * Os_TE_491045 Os_TE_491042 Chr3 34280556 34280557 + ORSgTEMT00600160 361 0.0013 (4/2990) 0 * Os_TE_491041 Os_TE_491041 Chr3 34280553 34280552 + ORSgTEMT00600124 361 0.0013 (4/2994) 0 * Os_TE_491042 Os_TE_491026 Chr3 34275772 34275773 + RIREX_LTR 8828 0.0010 (3/2977) 0 * Os_TE_491025 Os_TE_491025 Chr3 34275768 34275767 - RIREX_LTR 8828 0.0013 (4/2972) 0 * Os_TE_491026 Os_TE_491024 Chr3 34273952 34273953 - AMYLTP 383 0.0020 (6/2989) 0 * * Os_TE_491019 Chr3 34271293 34271294 + COPI2_LTR 4733 0.0003 (1/2985) 0 * * Os_TE_491008 Chr3 34268516 34268517 - RIREX_LTR 8828 0.0061 (18/2973) 0 * * Os_TE_491007 Chr3 34268150 34268151 + COPI2_LTR 4733 0.0003 (1/2993) 0 * * Os_TE_491005 Chr3 34267902 34267903 + COPI2_LTR 4733 0.0037 (11/2997) 0 * * Os_TE_490989 Chr3 34258998 34258999 - SC-3_LTR 5748 0.0003 (1/2987) 0 * * Os_TE_490985 Chr3 34257084 34257085 + INDITTO 263 0.0651 (195/2994) 0 * Os_TE_490984 Os_TE_490984 Chr3 34257082 34257081 - INDITTO 263 0.0645 (193/2991) 0 * Os_TE_490985 Os_TE_490972 Chr3 34253653 34247224 - COPIA2-LTR_OS 6433 0.3896 (1142/2931) 1 Intact * Os_TE_490957 Chr3 34244130 34244131 - NDNA1TNA_OS 334 0.0113 (32/2831) -1 * * Os_TE_490951 Chr3 34235358 34235357 + TWIFB1 3737 0.0003 (1/2986) 0 * * Os_TE_490941 Chr3 34226904 34226905 + TWIFBIG 3567 0.0578 (159/2749) 0 * Os_TE_490940 Os_TE_490940 Chr3 34226897 34226896 - ORSiTETNOOT00216 3569 0.0504 (135/2678) 0 * Os_TE_490941 Os_TE_490922 Chr3 34217206 34217205 - STOWAWAY1_OS 149 0.0598 (179/2994) 0 * Os_TE_490921 Os_TE_490921 Chr3 34217205 34217206 + ORSgTEMT01701591 154 0.0582 (174/2990) 0 * Os_TE_490922 Os_TE_490919 Chr3 34215203 34215202 + ORSgTEMT00300063 413 0.0589 (175/2972) 0 * * Os_TE_490907 Chr3 34212540 34212541 - HARB-1_OS 5166 0.0697 (207/2972) 0 * Os_TE_490906 Os_TE_490906 Chr3 34212538 34212537 + HARB-1_OS 5166 0.0696 (207/2975) 0 * Os_TE_490907 Os_TE_490905 Chr3 34211901 34211643 + ORSgTETNOOT00221 261 0.4012 (1129/2814) 1 Intact Os_TE_490904 Os_TE_490904 Chr3 34211643 34211900 + INDITTO 263 0.3979 (1115/2802) 1 Intact Os_TE_490905 Os_TE_490903 Chr3 34211579 34211580 + F524 291 0.0568 (165/2904) 0 * * Os_TE_490902 Chr3 34211354 34211353 - F524 291 0.0470 (135/2871) 0 * * Os_TE_490881 Chr3 34198816 34198817 - NDNA1TNA_OS 334 0.0010 (3/2985) 0 * Os_TE_490880 Os_TE_490880 Chr3 34198814 34198813 + NDNA1TNA_OS 334 0.0010 (3/2985) 0 * Os_TE_490881 Os_TE_490878 Chr3 34198700 34198699 - STOWAWAY51_OS 246 0.0027 (8/2978) 0 * * Os_TE_490846 Chr3 34181404 34181405 - RETROSAT2LTR 12796 0.3687 (1087/2948) 0 * Os_TE_490845 Os_TE_490845 Chr3 34181402 34181401 + RETROSAT2LTR 12796 0.3068 (836/2725) 0 * Os_TE_490846 Os_TE_490818 Chr3 34165640 34165639 - TYPEM 227 0.0017 (5/2929) 0 * * Os_TE_490817 Chr3 34165626 34165625 + ORSgTEMT00901862 245 0.0677 (199/2938) 0 * Os_TE_490816 Os_TE_490816 Chr3 34165623 34165624 + ORSgTEMT00900319 250 0.0654 (193/2952) 0 * Os_TE_490817 Os_TE_490763 Chr3 34129394 34129395 - ORSiTERTOOT00441 4741 0.0023 (7/2988) 0 * Os_TE_490762 Os_TE_490762 Chr3 34129390 34129389 + ORSiTERTOOT00441 4741 0.0023 (7/2985) 0 * Os_TE_490763 Os_TE_490746 Chr3 34122960 34122961 + RIREX_LTR 8828 0.0003 (1/2980) 0 * Os_TE_490745 Os_TE_490745 Chr3 34122956 34122955 - RIREX_LTR 8828 0.0003 (1/2977) 0 * Os_TE_490746 Os_TE_490728 Chr3 34115836 34115837 - RETRO2_LTR 12874 0.4159 (1233/2965) 0 * * Os_TE_490706 Chr3 34110949 34110950 + MPING 430 0.0003 (1/2921) 0 * * Os_TE_490623 Chr3 34083681 34083682 + ORSgTEMT01601525 239 0.0013 (4/2985) 0 * * Os_TE_490615 Chr3 34083170 34083169 - ORSgTEMT01601208 238 0.0020 (6/2968) 0 * Os_TE_490614 Os_TE_490614 Chr3 34083167 34083168 - ORSgTEMT01600639 228 0.0020 (6/2980) 0 * Os_TE_490615 Os_TE_490613 Chr3 34083057 34083056 + COPI2_LTR 4733 0.0017 (5/2972) 0 * * Os_TE_490589 Chr3 34077175 34077176 + TESSBIG 4057 0.1266 (368/2906) 0 * * Os_TE_490586 Chr3 34075095 34075096 - RETROFIT3_LTR 5391 0.0031 (9/2943) 0 * Os_TE_490585 Os_TE_490585 Chr3 34075091 34075090 + RETROFIT3_LTR 5391 0.0031 (9/2942) 0 * Os_TE_490586 Os_TE_490521 Chr3 34049342 34049343 - F524 291 0.5025 (1494/2973) 0 * * Os_TE_490519 Chr3 34048563 34048562 + RIREX_LTR 8828 0.0007 (2/2961) 0 * * Os_TE_490518 Chr3 34048208 34048209 - ORSgTETNOOT00544 147 0.5090 (1499/2945) 0 * * Os_TE_490505 Chr3 34047169 34046060 - MuDR3_OS 8604 0.6334 (1315/2076) 1 Intact Os_TE_490504 Os_TE_490504 Chr3 34046060 34047166 - MuDR3_OS 8604 0.4964 (1460/2941) 1 Intact Os_TE_490505 Os_TE_490503 Chr3 34045849 34045707 + ORSiTEMT03300001 145 0.5069 (1496/2951) 1 Intact Os_TE_490502 Os_TE_490502 Chr3 34045697 34045846 - ORSiTEMT03300001 145 0.5121 (1528/2984) 1 Intact Os_TE_490503 Os_TE_490493 Chr3 34037949 34037378 + SZ-33LTR 575 0.5112 (1529/2991) 1 Intact Os_TE_490492 Os_TE_490492 Chr3 34037378 34037940 - SZ-7A_LTR 11400 0.5127 (1530/2984) 1 Solo_LTR Os_TE_490493 Os_TE_490489 Chr3 34035629 34035628 + STOWAWAY51_OS 246 0.0010 (3/2991) 0 * Os_TE_490488 Os_TE_490488 Chr3 34035623 34035624 - STOWAWAY51_OS 246 0.0007 (2/2991) 0 * Os_TE_490489 Os_TE_490486 Chr3 34034454 34034455 - RETROSAT3_LTR 11537 0.0013 (4/2991) 0 * Os_TE_490485 Os_TE_490485 Chr3 34034450 34034449 + RETROSAT3_LTR 11537 0.0013 (4/2991) 0 * Os_TE_490486 Os_TE_490479 Chr3 34030825 34030824 - TYPEM 227 0.0013 (4/2994) 0 * Os_TE_490478 Os_TE_490478 Chr3 34030824 34030825 - ORSgTEMT02400246 177 0.0013 (4/2992) 0 * Os_TE_490479 Os_TE_490463 Chr3 34028878 34028877 + MERMITEA 1710 0.0288 (86/2986) 0 * * Os_TE_490458 Chr3 34027035 34027034 - ORSgTETN00200001 10994 0.0024 (7/2952) 0 * * Os_TE_490444 Chr3 34018579 34018580 + ORSiTERTOOT00296 5553 0.0007 (2/2969) 0 * Os_TE_490443 Os_TE_490443 Chr3 34018574 34018573 - SC-3_LTR 5748 0.0007 (2/2974) 0 * Os_TE_490444 Os_TE_490430 Chr3 34012483 34012484 + MERMITEA 1710 0.0003 (1/2976) 0 * * Os_TE_490398 Chr3 33993157 33993156 - ORSgTEMT00500026 147 0.0503 (150/2981) 0 * * Os_TE_490390 Chr3 33992048 33992049 + TWIF 586 0.0005 (1/1980) -1 * Os_TE_490389 Os_TE_490389 Chr3 33992041 33992040 - ORSiTETNOOT00134 607 0.0006 (1/1568) -1 * Os_TE_490390 Os_TE_490382 Chr3 33987187 33987188 + ORSgTEMT06100010 269 0.4906 (1466/2988) 0 * Os_TE_490381 Os_TE_490381 Chr3 33987185 33987184 - ORSgTEMT06100010 269 0.4920 (1472/2992) 0 * Os_TE_490382 Os_TE_490349 Chr3 33979752 33979751 + STOWAWAY51_OS 246 0.0007 (2/2973) 0 * * Os_TE_490312 Chr3 33954735 33949307 + SZ-48LTR 3632 0.4447 (1183/2660) 1 Intact Os_TE_490310 Os_TE_490310 Chr3 33949307 33954735 - SZ-48LTR 3632 0.3975 (1161/2921) 1 Intact Os_TE_490312 Os_TE_490292 Chr3 33946806 33946805 - ORSgTETNOOT01706 255 0.0007 (2/2950) 0 * * Os_TE_490285 Chr3 33944736 33944737 + STOWAWAY18_OS 216 0.0010 (3/2994) 0 * Os_TE_490284 Os_TE_490284 Chr3 33944735 33944734 - STOWAWAY18_OS 216 0.0010 (3/2982) 0 * Os_TE_490285 Os_TE_490273 Chr3 33936539 33936538 + ORSgTEMT00700017 386 0.0003 (1/2968) 0 * Os_TE_490272 Os_TE_490272 Chr3 33936531 33936532 + ORSgTEMT00700017 386 0.0003 (1/2969) 0 * Os_TE_490273 Os_TE_490238 Chr3 33924992 33924991 + ORSgTEMT00900024 245 0.0212 (63/2977) 0 * * Os_TE_490231 Chr3 33924272 33924271 - ORSgTETNOOT00908 242 0.0095 (28/2940) 0 * * Os_TE_490219 Chr3 33920076 33920077 + ORSiTERTOOT00296 5553 0.0017 (5/2997) 0 * Os_TE_490218 Os_TE_490218 Chr3 33920072 33920071 - SC-3_LTR 5748 0.0017 (5/2938) 0 * Os_TE_490219 Os_TE_490217 Chr3 33918881 33918882 - SC-3_LTR 5748 0.0034 (10/2985) 0 * * Os_TE_490211 Chr3 33913231 33913232 + SZ-29LTR 1393 0.0205 (61/2972) 0 * Os_TE_490210 Os_TE_490210 Chr3 33913227 33913226 - SZ-44LTR 1408 0.0212 (63/2976) 0 * Os_TE_490211 Os_TE_490208 Chr3 33912634 33912635 + ORSiTERTOOT00402 2660 0.0003 (1/2934) 0 * * Os_TE_490188 Chr3 33903471 33903472 + ORSiTERTOOT00027 10853 0.5307 (1557/2934) 0 * * Os_TE_490171 Chr3 33898227 33898228 + ORSgTEMT01602349 231 0.0003 (1/2951) 0 * * Os_TE_490094 Chr3 33850080 33850081 - TNR2A 152 0.0030 (9/2987) 0 * * Os_TE_490070 Chr3 33835693 33835694 - SC-7_LTR 4431 0.0083 (25/2995) 0 * Os_TE_490069 Os_TE_490069 Chr3 33835689 33835688 + SC-7_LTR 4431 0.0077 (23/2996) 0 * Os_TE_490070 Os_TE_490061 Chr3 33829523 33829524 + MPING 430 0.0020 (6/2977) 0 * Os_TE_490060 Os_TE_490060 Chr3 33829521 33829520 - MPING 430 0.0020 (6/2980) 0 * Os_TE_490061 Os_TE_490038 Chr3 33814411 33814412 + ORSiTERTOOT00226 792 0.0003 (1/2976) 0 * * Os_TE_490032 Chr3 33813874 33813875 - OSTE24 683 0.0003 (1/2980) 0 * * Os_TE_490030 Chr3 33813260 33813261 + CLOUD-7 495 0.0010 (3/2994) 0 * * Os_TE_490017 Chr3 33807452 33807453 + SC-8_LTR 4951 0.0003 (1/2997) 0 * * Os_TE_490013 Chr3 33804251 33804252 + ORSgTETNOOT00908 242 0.0007 (2/2987) 0 * * Os_TE_489994 Chr3 33799733 33799734 - AMYLTP 383 0.0007 (2/2997) 0 * * Os_TE_489986 Chr3 33793844 33793843 - HELITRON4_OS 13190 0.0854 (256/2996) 0 * * Os_TE_489983 Chr3 33789543 33789544 + NDNA1TNA_OS 334 0.1204 (349/2899) 0 * Os_TE_489982 Os_TE_489982 Chr3 33789542 33789541 - NDNA1TNA_OS 334 0.1280 (371/2899) 0 * Os_TE_489983 Os_TE_489979 Chr3 33787649 33787648 - STOWAWAY1_OS 149 0.0010 (3/2993) 0 * * Os_TE_489948 Chr3 33774409 33774410 - MuDR2_OS 6770 0.0010 (2/1965) 0 * * Os_TE_489943 Chr3 33771417 33771418 + AMYLTP 383 0.0521 (156/2994) 0 * Os_TE_489942 Os_TE_489942 Chr3 33771409 33771408 - AMYLTP 383 0.0534 (160/2998) 0 * Os_TE_489943 Os_TE_489938 Chr3 33768859 33768860 - MERMITE18B 1306 0.0088 (26/2943) 0 * * Os_TE_489937 Chr3 33767824 33767823 + ORSgTETNOOT00072 203 0.0157 (47/2994) 0 * * Os_TE_489931 Chr3 33764174 33764175 - KIDDOC 275 0.0156 (45/2881) 0 * * Os_TE_489921 Chr3 33760641 33760642 - ORSgTEMT00900099 250 0.0174 (50/2868) 0 * * Os_TE_489901 Chr3 33754087 33754086 - ORSgTEMT01601208 238 0.0098 (29/2971) 0 * Os_TE_489900 Os_TE_489900 Chr3 33754084 33754085 - ORSgTEMT01600639 228 0.0131 (39/2969) 0 * Os_TE_489901 Os_TE_489898 Chr3 33752162 33752163 + AMYLTP 383 0.0747 (221/2958) 0 * * Os_TE_489853 Chr3 33736275 33736276 + ORSgTETNOOT01668 244 0.0010 (3/2935) 0 * * Os_TE_489846 Chr3 33734865 33734866 + RIREX_LTR 8828 0.0003 (1/2987) 0 * Os_TE_489845 Os_TE_489845 Chr3 33734861 33734860 - RIREX_LTR 8828 0.0003 (1/2990) 0 * Os_TE_489846 Os_TE_489844 Chr3 33733706 33733705 - STOWAWAY51_OS 246 0.0013 (4/2993) 0 * * Os_TE_489837 Chr3 33729453 33729454 - INDITTO 263 0.0786 (233/2965) 0 * Os_TE_489836 Os_TE_489836 Chr3 33729451 33729450 + INDITTO 263 0.0772 (229/2967) 0 * Os_TE_489837 Os_TE_489835 Chr3 33729402 33729403 - HARB-1_OS 5166 0.0003 (1/2948) 0 * Os_TE_489834 Os_TE_489834 Chr3 33729400 33729399 + HARB-1_OS 5166 0.0003 (1/2939) 0 * Os_TE_489835 Os_TE_489823 Chr3 33724722 33724723 + TOS17LTR 138 0.0010 (3/2992) 0 * Os_TE_489822 Os_TE_489822 Chr3 33724718 33724717 - TOS17LTR 138 0.0010 (3/2990) 0 * Os_TE_489823 Os_TE_489821 Chr3 33724339 33724340 + ORSiTERTOOT00381 4988 0.0003 (1/2988) 0 * * Os_TE_489800 Chr3 33711211 33711212 + TYPEU4 402 0.0013 (4/2978) 0 * Os_TE_489799 Os_TE_489799 Chr3 33711202 33711201 - TYPEU1 380 0.0017 (5/2979) 0 * Os_TE_489800 Os_TE_489795 Chr3 33710363 33710364 - OLO24 345 0.0007 (2/2988) 0 * Os_TE_489794 Os_TE_489794 Chr3 33710361 33710360 + OLO24 345 0.0007 (2/2982) 0 * Os_TE_489795 Os_TE_489792 Chr3 33707265 33702009 - ORSiTERTOOT00329 5144 0.7497 (2235/2981) 1 Intact Os_TE_489791 Os_TE_489791 Chr3 33702009 33707265 + ORSiTERTOOT00329 5144 0.7458 (2215/2970) 1 Intact Os_TE_489792 Os_TE_489780 Chr3 33689958 33689959 - SC-3_LTR 5748 0.0013 (4/2999) 0 * Os_TE_489779 Os_TE_489779 Chr3 33689954 33689953 + ORSiTERTOOT00296 5553 0.0010 (3/2999) 0 * Os_TE_489780 Os_TE_489776 Chr3 33687814 33687815 - RETRO2_LTR 12874 0.0636 (190/2987) 0 * Os_TE_489775 Os_TE_489775 Chr3 33687810 33687809 + RETRO2_LTR 12874 0.0624 (186/2983) 0 * Os_TE_489776 Os_TE_489774 Chr3 33687563 33687564 - SC-3_LTR 5748 0.0003 (1/2998) 0 * Os_TE_489773 Os_TE_489773 Chr3 33687559 33687558 + ORSiTERTOOT00296 5553 0.0003 (1/2997) 0 * Os_TE_489774 Os_TE_489751 Chr3 33680682 33680683 - HATOS1 3488 0.0685 (204/2980) 0 * * Os_TE_489740 Chr3 33678086 33678085 - ORSiTEMT01000008 242 0.0010 (3/2998) 0 * * Os_TE_489711 Chr3 33661227 33661228 + SZ-9LTR 965 0.0013 (4/2999) 0 * Os_TE_489710 Os_TE_489710 Chr3 33661223 33661222 - SZ-9LTR 965 0.0013 (4/2998) 0 * Os_TE_489711 Os_TE_489703 Chr3 33658826 33658825 - SEVERIN-2 1952 0.1500 (413/2754) 0 * * Os_TE_489701 Chr3 33657964 33657963 - RETRO2_LTR 12874 0.0010 (3/2968) 0 * * Os_TE_489673 Chr3 33647834 33647835 + ORSiTERTOOT00033 4884 0.0004 (1/2741) 0 * Os_TE_489672 Os_TE_489672 Chr3 33647831 33647830 - RETROFIT_LTR 4866 0.0004 (1/2733) 0 * Os_TE_489673 Os_TE_489666 Chr3 33644200 33644201 + MUDRN5_OS 374 0.0004 (1/2782) 0 * * Os_TE_489665 Chr3 33644043 33644042 - RETROSAT4_LTR 13504 0.1090 (301/2761) 0 * * Os_TE_489660 Chr3 33643040 33643041 - SZ-35LTR 3853 0.0867 (257/2963) 0 * Os_TE_489659 Os_TE_489659 Chr3 33643036 33643035 + RETROSAT4_LTR 13504 0.0789 (232/2939) 0 * Os_TE_489660 Os_TE_489646 Chr3 33638023 33638024 + ORSiTERTOOT00028 8600 0.0484 (144/2976) 0 * Os_TE_489645 Os_TE_489645 Chr3 33638019 33638018 - TRUNCATOR2_LTR 2904 0.0518 (155/2991) 0 * Os_TE_489646 Os_TE_489612 Chr3 33621477 33621476 + ORSiTERTOOT00028 8600 0.0013 (4/2966) 0 * * Os_TE_489603 Chr3 33618442 33618443 - ORSgTEMT01600639 228 0.0040 (11/2728) 0 * * Os_TE_489601 Chr3 33618142 33618143 + ORSiTERTOOT00226 792 0.0003 (1/2983) 0 * * Os_TE_489599 Chr3 33617171 33617172 + RIREX_LTR 8828 0.0003 (1/2997) 0 * Os_TE_489598 Os_TE_489598 Chr3 33617167 33617166 - RIREX_LTR 8828 0.0003 (1/2998) 0 * Os_TE_489599 Os_TE_489597 Chr3 33613661 33613660 + STOWAWAY1_OS 149 0.0044 (13/2983) 0 * * Os_TE_489582 Chr3 33604930 33604931 - ORSgTEMT00500099 142 0.0051 (13/2527) 0 * * Os_TE_489552 Chr3 33592600 33592601 + STOWAWAY21_OS 243 0.0044 (13/2973) 0 * Os_TE_489551 Os_TE_489551 Chr3 33592589 33592588 - ORSgTEMT01601122 212 0.0040 (12/2977) 0 * Os_TE_489552 Os_TE_489531 Chr3 33585200 33585201 + RIREX_LTR 8828 0.0003 (1/2992) 0 * * Os_TE_489527 Chr3 33584468 33584467 - SC-3_LTR 5748 0.0003 (1/2991) 0 * * Os_TE_489494 Chr3 33568225 33568226 - AMYLTP 383 0.0017 (5/2894) 0 * * Os_TE_489487 Chr3 33565975 33565976 + CASTAWAY 364 0.0027 (6/2211) 0 * Os_TE_489486 Os_TE_489486 Chr3 33565969 33565968 - ORSgTEMT00600416 353 0.0032 (7/2222) 0 * Os_TE_489487 Os_TE_489481 Chr3 33563256 33563255 + TRSA_OS 353 0.0004 (1/2357) -1 * * Os_TE_489476 Chr3 33562306 33562305 + ORSgTEMT02500019 202 0.0020 (6/2981) 0 * * Os_TE_489458 Chr3 33557092 33557091 + STOWAWAY51_OS 246 0.0013 (4/2994) 0 * Os_TE_489457 Os_TE_489457 Chr3 33557086 33557087 - STOWAWAY51_OS 246 0.0013 (4/2989) 0 * Os_TE_489458 Os_TE_489447 Chr3 33552228 33552227 + STOWAWAY51_OS 246 0.0228 (63/2764) 0 * * Os_TE_489441 Chr3 33544688 33544689 + TWIF 586 0.0170 (42/2473) 0 * Os_TE_489440 Os_TE_489440 Chr3 33544681 33544680 - ORSiTETNOOT00200 3563 0.1497 (421/2813) 0 * Os_TE_489441 Os_TE_489417 Chr3 33528751 33528752 - HARB-1_OS 5166 0.0010 (3/2981) 0 * Os_TE_489416 Os_TE_489416 Chr3 33528749 33528748 + HARB-1_OS 5166 0.0010 (3/2973) 0 * Os_TE_489417 Os_TE_489415 Chr3 33527610 33527611 + OSTONOR1_LTR 6440 0.0003 (1/2996) 0 * Os_TE_489414 Os_TE_489414 Chr3 33527606 33527605 - ORSiTERT00100062 5674 0.0003 (1/2997) 0 * Os_TE_489415 Os_TE_489412 Chr3 33525590 33525591 + DS-RICE4N 715 0.0017 (5/2992) 0 * * Os_TE_489410 Chr3 33525397 33525396 - RETROSAT2LTR 12796 0.0004 (1/2848) 0 * * Os_TE_489396 Chr3 33515432 33515433 + COPI2_LTR 4733 0.0003 (1/2992) 0 * Os_TE_489395 Os_TE_489395 Chr3 33515428 33515427 - COPI2_LTR 4733 0.0003 (1/2986) 0 * Os_TE_489396 Os_TE_489393 Chr3 33515113 33515112 - F1275 157 0.0017 (5/2983) 0 * * Os_TE_489389 Chr3 33513876 33513875 + TWIFBIG 3567 0.0003 (1/2953) 0 * * Os_TE_489387 Chr3 33513006 33513007 + ORSgTETNOOT00012 241 0.0003 (1/2932) 0 * * Os_TE_489386 Chr3 33512755 33512756 + TYPEU4 402 0.0007 (2/2985) 0 * Os_TE_489385 Os_TE_489385 Chr3 33512747 33512746 - TYPEU1 380 0.0007 (2/2985) 0 * Os_TE_489386 Os_TE_489364 Chr3 33505896 33505897 - NDNA1TNA_OS 334 0.0441 (132/2994) 0 * Os_TE_489363 Os_TE_489363 Chr3 33505894 33505893 + NDNA1TNA_OS 334 0.0431 (129/2995) 0 * Os_TE_489364 Os_TE_489360 Chr3 33505144 33505143 + ORSgTEMT00900253 248 0.0020 (6/2988) 0 * Os_TE_489359 Os_TE_489359 Chr3 33505140 33505141 + ORSgTEMT00901844 250 0.0017 (5/2985) 0 * Os_TE_489360 Os_TE_489357 Chr3 33505023 33505024 + MPING 430 0.0007 (2/2992) 0 * Os_TE_489356 Os_TE_489356 Chr3 33505021 33505020 - MPING 430 0.0007 (2/2992) 0 * Os_TE_489357 Os_TE_489334 Chr3 33487809 33487808 + ORSiTERT00200071 1563 0.0003 (1/2959) 0 * * Os_TE_489302 Chr3 33472562 33472563 - F770 284 0.0852 (255/2994) 0 * Os_TE_489301 Os_TE_489301 Chr3 33472560 33472559 + F770 284 0.0855 (256/2993) 0 * Os_TE_489302 Os_TE_489289 Chr3 33465167 33465168 - COPIA2-LTR_OS 6433 0.0003 (1/2975) 0 * Os_TE_489288 Os_TE_489288 Chr3 33465163 33465162 + COPIA2-LTR_OS 6433 0.0003 (1/2967) 0 * Os_TE_489289 Os_TE_489282 Chr3 33461797 33461796 + ORSgTETNOOT00032 218 0.0341 (100/2930) 0 * * Os_TE_489281 Chr3 33459283 33459284 - RETRO1_LTR 8314 0.0010 (3/2876) 0 * * Os_TE_489276 Chr3 33458947 33458948 - RIREX_LTR 8828 0.0023 (7/2983) 0 * Os_TE_489275 Os_TE_489275 Chr3 33458943 33458942 + RIREX_LTR 8828 0.0024 (7/2970) 0 * Os_TE_489276 Os_TE_489262 Chr3 33452006 33452005 + ORSgTETN00100092 209 0.0003 (1/2989) 0 * * Os_TE_489259 Chr3 33451045 33444943 + OSTONOR1_LTR 6440 0.3753 (1125/2998) 1 Intact Os_TE_489255 Os_TE_489255 Chr3 33444943 33451045 - ORSiTERT00100062 5674 0.3680 (1100/2989) 1 Intact Os_TE_489259 Os_TE_489213 Chr3 33419321 33419322 + ORSiTERTOOT00296 5553 0.0004 (1/2748) 0 * Os_TE_489212 Os_TE_489212 Chr3 33419317 33419316 - SC-3_LTR 5748 0.0004 (1/2739) 0 * Os_TE_489213 Os_TE_489188 Chr3 33404881 33404882 - ORSiTETNOOT00134 607 0.0003 (1/2991) 0 * * Os_TE_489183 Chr3 33402372 33402371 + STOWAWAY21_OS 243 0.0013 (4/2973) 0 * * Os_TE_489165 Chr3 33396026 33396025 - ORSgTEMT01700299 212 0.0020 (6/2991) 0 * Os_TE_489164 Os_TE_489164 Chr3 33396023 33396024 + ORSgTEMT01701104 154 0.0020 (6/2991) 0 * Os_TE_489165 Os_TE_489163 Chr3 33395382 33395383 - SC-3_LTR 5748 0.0003 (1/2996) 0 * Os_TE_489162 Os_TE_489162 Chr3 33395378 33395377 + ORSiTERTOOT00296 5553 0.0003 (1/2997) 0 * Os_TE_489163 Os_TE_489158 Chr3 33391090 33391089 + DS-RICE4N 715 0.0003 (1/2989) 0 * * Os_TE_489154 Chr3 33388084 33388085 + TELIA 141 0.0003 (1/2925) 0 * Os_TE_489153 Os_TE_489153 Chr3 33388076 33388075 - TELIA 141 0.0003 (1/2918) 0 * Os_TE_489154 Os_TE_489115 Chr3 33362616 33362278 + ORSgTEMT00100531 325 0.3559 (1065/2992) 1 Intact Os_TE_489114 Os_TE_489114 Chr3 33362281 33362614 + NDNA1TNA_OS 334 0.3201 (916/2862) 1 Intact Os_TE_489115 Os_TE_489083 Chr3 33350492 33350493 - NDNA1TNA_OS 334 0.0013 (4/2992) 0 * Os_TE_489082 Os_TE_489082 Chr3 33350491 33350490 + ORSiTEMT00100001 540 0.0013 (4/2993) 0 * Os_TE_489083 Os_TE_489081 Chr3 33348578 33348579 - ORSiTERTOOT00329 5144 0.0007 (2/2979) 0 * Os_TE_489080 Os_TE_489080 Chr3 33348571 33348570 + ORSiTERTOOT00329 5144 0.0007 (2/2987) 0 * Os_TE_489081 Os_TE_489056 Chr3 33340562 33340561 - STOWAWAY51_OS 246 0.0336 (100/2978) 0 * Os_TE_489055 Os_TE_489055 Chr3 33340559 33340560 - STOWAWAY51_OS 246 0.0374 (111/2970) 0 * Os_TE_489056 Os_TE_489039 Chr3 33328065 33328066 - TNR2A 152 0.0040 (12/2992) 0 * Os_TE_489038 Os_TE_489038 Chr3 33328051 33328050 + TNR2A 152 0.0047 (14/2989) 0 * Os_TE_489039 Os_TE_489037 Chr3 33327862 33327863 - SZ-48LTR 3632 0.0010 (3/2994) 0 * Os_TE_489036 Os_TE_489036 Chr3 33327858 33327857 + SZ-48LTR 3632 0.0010 (3/2992) 0 * Os_TE_489037 Os_TE_489031 Chr3 33324729 33324730 - COPIA2-LTR_OS 6433 0.0007 (2/2987) 0 * Os_TE_489030 Os_TE_489030 Chr3 33324725 33324724 + COPIA2-LTR_OS 6433 0.0007 (2/2981) 0 * Os_TE_489031 Os_TE_489028 Chr3 33323847 33323848 + TOS17LTR 138 0.0010 (3/2990) 0 * Os_TE_489027 Os_TE_489027 Chr3 33323843 33323842 - TOS17LTR 138 0.0010 (3/2990) 0 * Os_TE_489028 Os_TE_489020 Chr3 33321560 33321561 + AMYLTP 383 0.0826 (240/2907) 0 * * Os_TE_489013 Chr3 33311708 33311709 - SC-8_LTR 4951 0.0007 (2/2994) 0 * Os_TE_489012 Os_TE_489012 Chr3 33311704 33311703 + SC-8_LTR 4951 0.0007 (2/2995) 0 * Os_TE_489013 Os_TE_488999 Chr3 33308855 33308856 + ORSiTERTOOT00226 792 0.0003 (1/2996) 0 * Os_TE_488998 Os_TE_488998 Chr3 33308851 33308850 - SZ-22_LTR 4403 0.0003 (1/2995) 0 * Os_TE_488999 Os_TE_488997 Chr3 33308696 33308697 - ORSgTETNOOT00053 263 0.0107 (32/2995) 0 * Os_TE_488996 Os_TE_488996 Chr3 33308694 33308693 + ORSgTETNOOT00221 261 0.0110 (33/2997) 0 * Os_TE_488997 Os_TE_488995 Chr3 33308524 33308525 - ORSgTETNOOT00754 253 0.0402 (120/2988) 0 * Os_TE_488994 Os_TE_488994 Chr3 33308521 33308520 - TOURIST-XI 219 0.0404 (121/2995) 0 * Os_TE_488995 Os_TE_488991 Chr3 33307519 33307276 + ORSgTETNOOT01668 244 0.3552 (1062/2990) 1 Intact Os_TE_488989 Os_TE_488989 Chr3 33307276 33307519 - TESS 244 0.3450 (1019/2954) 1 Intact Os_TE_488991 Os_TE_488982 Chr3 33299286 33299285 + JOUZHEN 596 0.0010 (3/2994) 0 * * Os_TE_488980 Chr3 33298392 33298393 - RIREX_LTR 8828 0.0023 (7/2994) 0 * Os_TE_488979 Os_TE_488979 Chr3 33298388 33298387 + RIREX_LTR 8828 0.0023 (7/2995) 0 * Os_TE_488980 Os_TE_488978 Chr3 33298383 33298384 - STOWAWAY51_OS 246 0.0003 (1/2997) 0 * * Os_TE_488901 Chr3 33257605 33257604 + STOWAWAY51_OS 246 0.0003 (1/2979) 0 * * Os_TE_488890 Chr3 33252649 33252650 - MDR2 6967 0.0871 (261/2996) 0 * * Os_TE_488876 Chr3 33249314 33249313 + TRUNCATOR 2918 0.0294 (88/2998) 0 * Os_TE_488875 Os_TE_488875 Chr3 33249313 33249314 - TRUNCATOR 2918 0.0300 (90/2998) 0 * Os_TE_488876 Os_TE_488860 Chr3 33238187 33238188 + DS-RICE3N 525 0.0007 (2/2989) 0 * * Os_TE_488826 Chr3 33223824 33223825 - RETROSAT5_LTR 13878 0.0834 (247/2961) 0 * Os_TE_488825 Os_TE_488825 Chr3 33223820 33223819 + SZ-67LTR 1540 0.0755 (223/2953) 0 * Os_TE_488826 Os_TE_488819 Chr3 33222209 33222210 - INDITTO 263 0.0003 (1/2948) 0 * * Os_TE_488802 Chr3 33217484 33217483 - F804 170 0.0013 (4/2992) 0 * * Os_TE_488787 Chr3 33214553 33214554 + OSR3_LTR 5201 0.5691 (1692/2973) 0 * * Os_TE_488784 Chr3 33213997 33213998 - SZ-67LTR 1540 0.0020 (6/2975) 0 * Os_TE_488783 Os_TE_488783 Chr3 33213993 33213992 + SZ-67LTR 1540 0.0020 (6/2972) 0 * Os_TE_488784 Os_TE_488782 Chr3 33213693 33213694 - MPING 430 0.0010 (3/2975) 0 * Os_TE_488781 Os_TE_488781 Chr3 33213691 33213690 + MPING 430 0.0013 (4/2978) 0 * Os_TE_488782 Os_TE_488779 Chr3 33213039 33213040 + ORSgTETNOOT00670 249 0.0017 (5/2936) 0 * * Os_TE_488769 Chr3 33208603 33208602 - ORSgTEMT01601432 239 0.0067 (20/2987) 0 * Os_TE_488768 Os_TE_488768 Chr3 33208600 33208601 + ORSgTEMT01602181 239 0.0070 (21/2995) 0 * Os_TE_488769 Os_TE_488740 Chr3 33203839 33203838 + TRUNCATOR 2918 0.1258 (333/2648) 0 * * Os_TE_488736 Chr3 33202615 33202616 + RETRO1_LTR 8314 0.0013 (4/2996) 0 * Os_TE_488735 Os_TE_488735 Chr3 33202611 33202610 - RETRO1_LTR 8314 0.0010 (3/2996) 0 * Os_TE_488736 Os_TE_488707 Chr3 33189002 33189003 - SC-8_LTR 4951 0.0003 (1/2999) 0 * Os_TE_488706 Os_TE_488706 Chr3 33188998 33188997 + SC-8_LTR 4951 0.0003 (1/2995) 0 * Os_TE_488707 Os_TE_488699 Chr3 33180553 33180552 + STOWAWAY44_OS 240 0.0003 (1/2997) 0 * * Os_TE_488688 Chr3 33175703 33175704 - TEMPINDAS 4259 0.0074 (22/2988) 0 * * Os_TE_488671 Chr3 33172749 33172750 + STOWAWAY44_OS 240 0.0003 (1/2989) 0 * * Os_TE_488660 Chr3 33167838 33167839 + NDNA1TNA_OS 334 0.0017 (5/2996) 0 * Os_TE_488659 Os_TE_488659 Chr3 33167836 33167835 - NDNA1TNA_OS 334 0.0017 (5/2998) 0 * Os_TE_488660 Os_TE_488639 Chr3 33164719 33164720 - F524 291 0.0003 (1/2955) 0 * * Os_TE_488632 Chr3 33161706 33161707 + RIREX_LTR 8828 0.0043 (13/2998) 0 * Os_TE_488631 Os_TE_488631 Chr3 33161702 33161701 - RIREX_LTR 8828 0.0043 (13/2998) 0 * Os_TE_488632 Os_TE_488616 Chr3 33151523 33151522 - RETROSAT2LTRA 3112 0.0017 (5/2992) 0 * * Os_TE_488615 Chr3 33149880 33149881 - SZ-43LTR 4039 0.0007 (2/2943) 0 * * Os_TE_488611 Chr3 33148001 33148000 - TRUNCATOR 2918 0.0010 (3/2869) 0 * Os_TE_488610 Os_TE_488610 Chr3 33148000 33148001 + TRUNCATOR 2918 0.0014 (4/2869) 0 * Os_TE_488611 Os_TE_488560 Chr3 33130977 33130978 - MPING 430 0.0003 (1/2996) 0 * Os_TE_488559 Os_TE_488559 Chr3 33130975 33130974 + MPING 430 0.0003 (1/2991) 0 * Os_TE_488560 Os_TE_488558 Chr3 33130196 33130197 + OSTE33 1012 0.0775 (231/2982) 0 * * Os_TE_488537 Chr3 33127379 33127378 + JOUZHENA 607 0.0003 (1/2973) 0 * * Os_TE_488513 Chr3 33124571 33124572 + MPING 430 0.0007 (2/2948) 0 * Os_TE_488512 Os_TE_488512 Chr3 33124569 33124568 - MPING 430 0.0007 (2/2937) 0 * Os_TE_488513 Os_TE_488502 Chr3 33123750 33123749 + NDNA1TNA_OS 334 0.0044 (13/2967) 0 * Os_TE_488501 Os_TE_488501 Chr3 33123748 33123749 - NDNA1TNA_OS 334 0.0044 (13/2952) 0 * Os_TE_488502 Os_TE_488493 Chr3 33122677 33122678 + NDNA1TNA_OS 334 0.3645 (1072/2941) 0 * * Os_TE_488478 Chr3 33119896 33119897 + RETRO2_LTR 12874 0.3675 (1076/2928) 0 * * Os_TE_488458 Chr3 33110624 33110623 + OLO24 345 0.0005 (1/1924) 0 * * Os_TE_488454 Chr3 33109723 33109722 - TYPEM 227 0.0003 (1/2930) 0 * Os_TE_488453 Os_TE_488453 Chr3 33109722 33109723 - ORSgTEMT02400148 214 0.0003 (1/2944) 0 * Os_TE_488454 Os_TE_488409 Chr3 33089109 33089110 + NDNA2TNA_OS 346 0.0003 (1/2995) 0 * * Os_TE_488401 Chr3 33086367 33086366 - STOWAWAY51_OS 246 0.0017 (5/2980) 0 * Os_TE_488400 Os_TE_488400 Chr3 33086361 33086362 + STOWAWAY51_OS 246 0.0017 (5/2983) 0 * Os_TE_488401 Os_TE_488398 Chr3 33084675 33084676 - DNAUN1_OS 408 0.0003 (1/2988) 0 * * Os_TE_488393 Chr3 33077820 33077819 - SZ-22_LTR 4403 0.0003 (1/2961) 0 * * Os_TE_488382 Chr3 33075126 33074902 - ORSgTEMT02400246 177 0.5341 (1591/2979) 1 Intact Os_TE_488381 Os_TE_488381 Chr3 33074902 33075122 + ORSgTEMT02400014 229 0.5427 (1595/2939) 1 Intact Os_TE_488382 Os_TE_488370 Chr3 33069560 33069561 - SC-8_LTR 4951 0.0003 (1/2993) 0 * Os_TE_488369 Os_TE_488369 Chr3 33069556 33069555 + SC-8_LTR 4951 0.0003 (1/2997) 0 * Os_TE_488370 Os_TE_488365 Chr3 33065450 33065449 + STOWAWAY51_OS 246 0.0227 (68/2999) 0 * Os_TE_488364 Os_TE_488364 Chr3 33065444 33065445 - STOWAWAY51_OS 246 0.0227 (68/2999) 0 * Os_TE_488365 Os_TE_488354 Chr3 33060484 33060485 + STOWAWAY44_OS 240 0.0027 (8/2985) 0 * * Os_TE_488289 Chr3 33029361 33029362 - TYPEM 227 0.0304 (91/2992) 0 * * Os_TE_488271 Chr3 33025255 33025256 + AMYLTP 383 0.0023 (7/2982) 0 * Os_TE_488270 Os_TE_488270 Chr3 33025247 33025246 - AMYLTP 383 0.0020 (6/2985) 0 * Os_TE_488271 Os_TE_488268 Chr3 33024450 33024451 + COPI2_LTR 4733 0.0010 (3/2999) 0 * Os_TE_488267 Os_TE_488267 Chr3 33024446 33024445 - COPI2_LTR 4733 0.0010 (3/2998) 0 * Os_TE_488268 Os_TE_488237 Chr3 33017134 33017133 + STOWAWAY51_OS 246 0.1783 (522/2928) 0 * * Os_TE_488236 Chr3 33017128 33017129 + ORSgTEMT01601591 242 0.6463 (1911/2957) 0 * * Os_TE_488222 Chr3 33010408 33010407 + HARB-1_OS 5166 0.0268 (80/2984) 0 * * Os_TE_488213 Chr3 33008024 33008025 - TYPEM 227 0.0097 (29/2993) 0 * Os_TE_488212 Os_TE_488212 Chr3 33008023 33008022 - ORSgTEMT02400179 221 0.0100 (30/2995) 0 * Os_TE_488213 Os_TE_488204 Chr3 33007248 33007247 + ORSgTERT00200868 3395 0.0004 (1/2722) 0 * * Os_TE_488186 Chr3 33000176 33000177 + Cassandra_OS-LTR 764 0.0005 (1/1979) -1 * * Os_TE_488133 Chr3 32983021 32983022 + COPI2_LTR 4733 0.0007 (2/2972) 0 * Os_TE_488132 Os_TE_488132 Chr3 32983017 32983016 - COPI2_LTR 4733 0.0003 (1/2973) 0 * Os_TE_488133 Os_TE_488125 Chr3 32978598 32978597 + SEVERIN-2 1952 0.0003 (1/2944) 0 * * Os_TE_488101 Chr3 32970113 32970114 + RETRO2A_LTR 12895 0.0087 (26/2990) 0 * * Os_TE_488067 Chr3 32948895 32948896 + SC-8_LTR 4951 0.0030 (9/2996) 0 * Os_TE_488066 Os_TE_488066 Chr3 32948891 32948890 - SC-8_LTR 4951 0.0030 (9/2994) 0 * Os_TE_488067 Os_TE_488052 Chr3 32936592 32936591 - CASTAWAY 364 0.0074 (22/2991) 0 * * Os_TE_488050 Chr3 32936188 32936189 + ORSgTETNOOT00032 218 0.0091 (27/2954) 0 * * Os_TE_488016 Chr3 32919766 32919767 + RIREX_LTR 8828 0.0003 (1/2985) 0 * Os_TE_488015 Os_TE_488015 Chr3 32919762 32919761 - RIREX_LTR 8828 0.0003 (1/2981) 0 * Os_TE_488016 Os_TE_488014 Chr3 32918738 32918737 - CLOUD 734 0.0013 (4/2964) 0 * Os_TE_488013 Os_TE_488013 Chr3 32918683 32918684 - CLOUD 734 0.0020 (6/2967) 0 * Os_TE_488014 Os_TE_488000 Chr3 32915331 32915332 + TELIA 141 0.0077 (23/2982) 0 * Os_TE_487999 Os_TE_487999 Chr3 32915323 32915322 + TELIA 141 0.0077 (23/2981) 0 * Os_TE_488000 Os_TE_487991 Chr3 32911998 32911999 + ORSgTEMT00700017 386 0.0003 (1/2990) 0 * * Os_TE_487957 Chr3 32896755 32896754 - TRUNCATOR2_LTR 2904 0.0003 (1/2940) 0 * * Os_TE_487948 Chr3 32896003 32896002 + AMYLTP 383 0.0082 (24/2937) 0 * * Os_TE_487947 Chr3 32895889 32895890 + OSTE33 1012 0.5118 (1493/2917) 0 * Os_TE_487946 Os_TE_487946 Chr3 32895881 32895880 + OSTE33 1012 0.5124 (1504/2935) 0 * Os_TE_487947 Os_TE_487895 Chr3 32886574 32886575 - OLO24 345 0.0688 (201/2921) 0 * * Os_TE_487891 Chr3 32885989 32885988 - NDNA1TNA_OS 334 0.0087 (26/2992) 0 * * Os_TE_487877 Chr3 32879376 32879375 - MUDRN3_OS 903 0.0007 (2/2936) 0 * * Os_TE_487841 Chr3 32867861 32867860 - STOWAWAY44_OS 240 0.0003 (1/2996) 0 * * Os_TE_487828 Chr3 32865259 32865260 - SC-8_LTR 4951 0.0003 (1/2995) 0 * Os_TE_487827 Os_TE_487827 Chr3 32865255 32865254 + SC-8_LTR 4951 0.0003 (1/2990) 0 * Os_TE_487828 Os_TE_487824 Chr3 32858973 32858974 - INDITTO 263 0.2829 (839/2966) 0 * Os_TE_487823 Os_TE_487823 Chr3 32858971 32858970 + INDITTO 263 0.2720 (797/2930) 0 * Os_TE_487824 Os_TE_487822 Chr3 32858852 32858853 + RIREX_LTR 8828 0.0003 (1/2949) 0 * Os_TE_487821 Os_TE_487821 Chr3 32858848 32858847 - RIREX_LTR 8828 0.0003 (1/2961) 0 * Os_TE_487822 Os_TE_487816 Chr3 32857857 32857858 + F1275 157 0.0671 (197/2935) 0 * * Os_TE_487815 Chr3 32857734 32857735 - HELITRON3_OS 12693 0.0003 (1/2967) 0 * * Os_TE_487787 Chr3 32851109 32851108 + ORSiTERTOOT00329 5144 0.0027 (8/2988) 0 * * Os_TE_487785 Chr3 32849159 32849160 + ORSgTEMT01602004 234 0.0020 (6/2970) 0 * * Os_TE_487784 Chr3 32848991 32848992 + ORSgTEMT02400009 192 0.0077 (23/2987) 0 * Os_TE_487783 Os_TE_487783 Chr3 32848990 32848989 - TYPEM 227 0.0074 (22/2982) 0 * Os_TE_487784 Os_TE_487747 Chr3 32829116 32829115 + COWARD-3 221 0.0657 (196/2985) 0 * * Os_TE_487739 Chr3 32825636 32825635 - ORSgTEMT01601432 239 0.0028 (8/2907) 0 * * Os_TE_487726 Chr3 32821278 32821277 - ORSiRGRR00000001 280 0.0003 (1/2978) 0 * * Os_TE_487688 Chr3 32800487 32799735 + MUDRN2_OS 756 0.3555 (1060/2982) 1 Intact Os_TE_487686 Os_TE_487686 Chr3 32799735 32800487 - MUDRN1_OS 764 0.3566 (1064/2984) 1 Intact Os_TE_487688 Os_TE_487672 Chr3 32790361 32790360 - TREP215 239 0.0661 (197/2980) 0 * Os_TE_487671 Os_TE_487671 Chr3 32790358 32790359 + ORSgTEMT01602188 240 0.0320 (92/2873) 0 * Os_TE_487672 Os_TE_487660 Chr3 32786466 32786467 - COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * * Os_TE_487652 Chr3 32781070 32781071 + ORSgTETNOOT01219 231 0.0037 (11/2982) 0 * Os_TE_487651 Os_TE_487651 Chr3 32781062 32781061 + ORSgTETNOOT00908 242 0.0037 (11/2989) 0 * Os_TE_487652 Os_TE_487650 Chr3 32780762 32780763 - ORSgTETNOOT01930 140 0.0691 (207/2995) 0 * Os_TE_487649 Os_TE_487649 Chr3 32780760 32780759 + ORSgTETNOOT01930 140 0.0705 (211/2994) 0 * Os_TE_487650 Os_TE_487648 Chr3 32780359 32780360 - SZ-22_LTR 4403 0.0020 (6/2981) 0 * Os_TE_487647 Os_TE_487647 Chr3 32780355 32780354 + ORSiTERTOOT00226 792 0.0020 (6/2994) 0 * Os_TE_487648 Os_TE_487615 Chr3 32756873 32756872 - ORSgTEMT02000040 196 0.0087 (26/2976) 0 * * Os_TE_487614 Chr3 32756866 32756865 + STOWAWAY51_OS 246 0.0003 (1/2950) 0 * * Os_TE_487594 Chr3 32739726 32739725 - MuDR2_OS 6770 0.0004 (1/2789) 0 * * Os_TE_487589 Chr3 32737626 32737627 - STOWAWAY51_OS 246 0.0003 (1/2989) 0 * * Os_TE_487528 Chr3 32715192 32715191 + ORSgTETNOOT01313 249 0.0003 (1/2997) 0 * * Os_TE_487508 Chr3 32706184 32706183 + ORSgTEMT00100531 325 0.2638 (786/2979) 0 * * Os_TE_487504 Chr3 32703635 32703636 + COPIA2-LTR_OS 6433 0.0010 (3/2996) 0 * Os_TE_487503 Os_TE_487503 Chr3 32703631 32703630 - COPIA2-LTR_OS 6433 0.0010 (3/2996) 0 * Os_TE_487504 Os_TE_487501 Chr3 32702469 32702470 - RIRE2_LTR 11306 0.0003 (1/2996) 0 * Os_TE_487500 Os_TE_487500 Chr3 32702465 32702464 + RIRE2_LTR 11306 0.0003 (1/2995) 0 * Os_TE_487501 Os_TE_487498 Chr3 32700688 32700689 + ORSgTETNOOT00908 242 0.0490 (146/2981) 0 * * Os_TE_487495 Chr3 32699644 32699643 - COPI2_LTR 4733 0.0004 (1/2676) 0 * * Os_TE_487493 Chr3 32698929 32698928 + STOWAWAY11_OS 292 0.0005 (1/2121) 0 * * Os_TE_487491 Chr3 32698213 32698214 - COPI2_LTR 4733 0.0003 (1/2985) 0 * Os_TE_487490 Os_TE_487490 Chr3 32698209 32698208 + COPI2_LTR 4733 0.0003 (1/2990) 0 * Os_TE_487491 Os_TE_487461 Chr3 32691713 32691714 - ORSgTEMT00500454 145 0.0018 (5/2780) 0 * * Os_TE_487452 Chr3 32691177 32691178 - TELIA 141 0.0003 (1/2976) 0 * Os_TE_487451 Os_TE_487451 Chr3 32691169 32691168 + TELIA 141 0.0003 (1/2976) 0 * Os_TE_487452 Os_TE_487448 Chr3 32685783 32685784 - SC-3_LTR 5748 0.0003 (1/2992) 0 * Os_TE_487447 Os_TE_487447 Chr3 32685779 32685778 + ORSiTERTOOT00296 5553 0.0003 (1/2993) 0 * Os_TE_487448 Os_TE_487429 Chr3 32671803 32671802 - ZM13-2_OS 108 0.0007 (2/2952) 0 * * Os_TE_487427 Chr3 32671166 32671167 - SC-8_LTR 4951 0.0007 (2/2991) 0 * Os_TE_487426 Os_TE_487426 Chr3 32671162 32671161 + SC-8_LTR 4951 0.0007 (2/2988) 0 * Os_TE_487427 Os_TE_487418 Chr3 32665647 32665646 + ORSiTETNOOT00107 906 0.0317 (95/2996) 0 * Os_TE_487417 Os_TE_487417 Chr3 32665643 32665644 - ORSiTETNOOT00107 906 0.0324 (97/2996) 0 * Os_TE_487418 Os_TE_487409 Chr3 32661300 32661301 + ORSgTETNOOT00032 218 0.0090 (27/2988) 0 * * Os_TE_487393 Chr3 32652220 32651860 + ORSgTEMT00600124 361 0.3516 (1044/2969) 1 Intact * Os_TE_487381 Chr3 32650760 32650759 + TELIA 141 0.0003 (1/2975) 0 * * Os_TE_487376 Chr3 32649949 32649950 - NDNA2TNA_OS 346 0.1413 (419/2965) 0 * Os_TE_487375 Os_TE_487375 Chr3 32649947 32649946 + NDNA2TNA_OS 346 0.1433 (425/2966) 0 * Os_TE_487376 Os_TE_487365 Chr3 32648304 32648305 - ORSgTEMT00600085 364 0.0465 (137/2944) 0 * * Os_TE_487352 Chr3 32643547 32643546 - STOWAWAY51_OS 246 0.0014 (4/2835) 0 * Os_TE_487351 Os_TE_487351 Chr3 32643544 32643545 - STOWAWAY51_OS 246 0.0014 (4/2877) 0 * Os_TE_487352 Os_TE_487343 Chr3 32641130 32641129 + ORSiTERTOOT00226 792 0.0220 (65/2960) 0 * * Os_TE_487341 Chr3 32640047 32640048 - ORSgTEMT00101466 345 0.0003 (1/2989) 0 * * Os_TE_487322 Chr3 32636159 32636479 + ORSgTEMT00100272 356 0.5775 (1684/2916) 1 Intact * Os_TE_487319 Chr3 32635846 32635847 + NDNA1TNA_OS 334 0.0034 (10/2969) 0 * Os_TE_487318 Os_TE_487318 Chr3 32635840 32635839 - NDNA1TNA_OS 334 0.0010 (3/2954) 0 * Os_TE_487319 Os_TE_487309 Chr3 32623997 32623996 - STOWAWAY51_OS 246 0.1462 (427/2921) 0 * Os_TE_487308 Os_TE_487308 Chr3 32623991 32623992 + STOWAWAY51_OS 246 0.1538 (452/2939) 0 * Os_TE_487309 Os_TE_487281 Chr3 32618917 32618916 + TWIF 586 0.0003 (1/2982) 0 * * Os_TE_487274 Chr3 32616597 32616596 - STOWAWAY51_OS 246 0.0003 (1/2984) 0 * Os_TE_487273 Os_TE_487273 Chr3 32616591 32616592 + STOWAWAY51_OS 246 0.0003 (1/2990) 0 * Os_TE_487274 Os_TE_487240 Chr3 32608879 32608878 + MPING 430 0.0020 (2/1017) 0 * * Os_TE_487217 Chr3 32606002 32606003 + ORSgTETNOOT01668 244 0.0003 (1/2911) 0 * * Os_TE_487214 Chr3 32605855 32605856 - STOWAWAY51_OS 246 0.0003 (1/2931) 0 * * Os_TE_487188 Chr3 32584669 32584670 + MERMITEA 1710 0.0003 (1/2947) 0 * Os_TE_487187 Os_TE_487187 Chr3 32584661 32584660 + MERMITEA 1710 0.0003 (1/2938) 0 * Os_TE_487188 Os_TE_487180 Chr3 32583194 32583195 - TNR2A 152 0.0020 (6/2997) 0 * Os_TE_487179 Os_TE_487179 Chr3 32583179 32583178 + TNR2A 152 0.0020 (6/2998) 0 * Os_TE_487180 Os_TE_487163 Chr3 32577208 32577209 - COPIA2-LTR_OS 6433 0.0007 (2/2961) 0 * Os_TE_487162 Os_TE_487162 Chr3 32577204 32577203 + COPIA2-LTR_OS 6433 0.0003 (1/2912) 0 * Os_TE_487163 Os_TE_487146 Chr3 32561581 32561582 + TOS17LTR 138 0.0003 (1/2977) 0 * Os_TE_487145 Os_TE_487145 Chr3 32561577 32561576 - TOS17LTR 138 0.0003 (1/2980) 0 * Os_TE_487146 Os_TE_487134 Chr3 32548783 32548784 + MPING 430 0.0033 (10/2993) 0 * Os_TE_487133 Os_TE_487133 Chr3 32548781 32548780 - MPING 430 0.0033 (10/2994) 0 * Os_TE_487134 Os_TE_487126 Chr3 32546426 32546425 - MIDWAY 985 0.0003 (1/2927) 0 * * Os_TE_487117 Chr3 32544530 32544531 - TESS 244 0.0069 (18/2602) 0 * Os_TE_487116 Os_TE_487116 Chr3 32544523 32544522 + TESS 244 0.0061 (16/2615) 0 * Os_TE_487117 Os_TE_487101 Chr3 32538748 32538749 + MPING 430 0.0003 (1/2997) 0 * Os_TE_487100 Os_TE_487100 Chr3 32538746 32538745 - MPING 430 0.0003 (1/2995) 0 * Os_TE_487101 Os_TE_487036 Chr3 32516037 32516038 + TNR2A 152 0.0010 (3/2974) 0 * * Os_TE_487034 Chr3 32514729 32514730 - SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_487033 Os_TE_487033 Chr3 32514725 32514724 + SC-8_LTR 4951 0.0003 (1/2991) 0 * Os_TE_487034 Os_TE_487028 Chr3 32509930 32509931 - RETROSAT4_LTR 13504 0.1806 (513/2841) 0 * * Os_TE_487020 Chr3 32507449 32507450 + RETROSAT4_LTR 13504 0.0013 (4/2993) 0 * Os_TE_487019 Os_TE_487019 Chr3 32507445 32507444 - RETROSAT4_LTR 13504 0.0013 (4/2988) 0 * Os_TE_487020 Os_TE_487012 Chr3 32506662 32506663 - INDITTO 263 0.0854 (254/2973) 0 * * Os_TE_487008 Chr3 32503680 32503681 - SZ-35LTR 3853 0.0880 (263/2988) 0 * Os_TE_487007 Os_TE_487007 Chr3 32503676 32503675 + RETROSAT4_LTR 13504 0.0837 (250/2986) 0 * Os_TE_487008 Os_TE_487006 Chr3 32503260 32503261 + COPIA2-LTR_OS 6433 0.0007 (2/2995) 0 * Os_TE_487005 Os_TE_487005 Chr3 32503256 32503255 - COPIA2-LTR_OS 6433 0.0007 (2/2997) 0 * Os_TE_487006 Os_TE_487003 Chr3 32502442 32502443 + HARB-1_OS 5166 0.0003 (1/2927) 0 * Os_TE_487002 Os_TE_487002 Chr3 32502440 32502439 - HARB-1_OS 5166 0.0003 (1/2932) 0 * Os_TE_487003 Os_TE_486986 Chr3 32498456 32498457 + COPI2_LTR 4733 0.0003 (1/2985) 0 * Os_TE_486985 Os_TE_486985 Chr3 32498452 32498451 - COPI2_LTR 4733 0.0003 (1/2991) 0 * Os_TE_486986 Os_TE_486962 Chr3 32486817 32486818 - ORSgTEMT02400179 221 0.0003 (1/2984) 0 * * Os_TE_486921 Chr3 32474348 32474347 + COPI2_LTR 4733 0.0010 (3/2997) 0 * * Os_TE_486871 Chr3 32448148 32448149 - AMYLTP 383 0.0244 (73/2995) 0 * Os_TE_486870 Os_TE_486870 Chr3 32448140 32448139 + AMYLTP 383 0.0250 (75/2996) 0 * Os_TE_486871 Os_TE_486865 Chr3 32445358 32445359 + ORSiTERTOOT00296 5553 0.0094 (28/2991) 0 * Os_TE_486864 Os_TE_486864 Chr3 32445354 32445353 - SC-3_LTR 5748 0.0090 (27/2992) 0 * Os_TE_486865 Os_TE_486856 Chr3 32439508 32439507 + SINE1OS 127 0.7714 (2295/2975) 0 * * Os_TE_486840 Chr3 32433987 32433988 - SZ-22_LTR 4403 0.0003 (1/2968) 0 * Os_TE_486839 Os_TE_486839 Chr3 32433983 32433982 + ORSiTERTOOT00226 792 0.0003 (1/2968) 0 * Os_TE_486840 Os_TE_486827 Chr3 32430708 32430709 + RETROSAT4_LTR 13504 0.0013 (4/2989) 0 * Os_TE_486826 Os_TE_486826 Chr3 32430704 32430703 - SZ-35LTR 3853 0.0017 (5/2992) 0 * Os_TE_486827 Os_TE_486818 Chr3 32427879 32427880 - COPI2_LTR 4733 0.0007 (2/2698) 0 * * Os_TE_486760 Chr3 32394680 32394681 - ORSgTEMT02400179 221 0.0003 (1/2995) 0 * Os_TE_486759 Os_TE_486759 Chr3 32394679 32394678 - TYPEM 227 0.0003 (1/2995) 0 * Os_TE_486760 Os_TE_486749 Chr3 32388739 32388738 - STOWAWAY51_OS 246 0.0003 (1/2992) 0 * Os_TE_486748 Os_TE_486748 Chr3 32388736 32388737 - STOWAWAY51_OS 246 0.0003 (1/2993) 0 * Os_TE_486749 Os_TE_486706 Chr3 32362608 32362607 + SC-8_LTR 4951 0.0003 (1/2976) 0 * * Os_TE_486705 Chr3 32361463 32361464 + ORSiTERTOOT00296 5553 0.0003 (1/2985) 0 * Os_TE_486704 Os_TE_486704 Chr3 32361459 32361458 - SC-3_LTR 5748 0.0003 (1/2985) 0 * Os_TE_486705 Os_TE_486671 Chr3 32347754 32347755 + COPI2_LTR 4733 0.0003 (1/2931) 0 * * Os_TE_486659 Chr3 32344089 32344090 + RETROSAT4_LTR 13504 0.0016 (2/1279) 0 * * Os_TE_486648 Chr3 32338535 32338536 + MPING 430 0.0030 (3/1012) 0 * Os_TE_486647 Os_TE_486647 Chr3 32338533 32338532 - MPING 430 0.0030 (3/1012) 0 * Os_TE_486648 Os_TE_486609 Chr3 32313231 32309513 + RETROSAT4_LTR 13504 0.3286 (974/2964) 1 Solo_LTR Os_TE_486601 Os_TE_486601 Chr3 32309513 32313231 - RETROSAT4_LTR 13504 0.3269 (970/2967) 1 Solo_LTR Os_TE_486609 Os_TE_486564 Chr3 32298548 32298549 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * * Os_TE_486562 Chr3 32297796 32297797 - COPI2_LTR 4733 0.0003 (1/2954) 0 * * Os_TE_486560 Chr3 32297170 32297171 + COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_486559 Os_TE_486559 Chr3 32297166 32297165 - COPI2_LTR 4733 0.0003 (1/2997) 0 * Os_TE_486560 Os_TE_486547 Chr3 32293607 32293606 + ORSgTEMT01602051 240 0.6237 (1802/2889) 0 * * Os_TE_486540 Chr3 32289526 32289527 + ORSgTETNOOT00908 242 0.0003 (1/2987) 0 * * Os_TE_486538 Chr3 32289263 32289264 + COPI2_LTR 4733 0.0003 (1/2978) 0 * * Os_TE_486537 Chr3 32288710 32287746 + SZ-9LTR 965 0.3298 (982/2978) 1 Intact * Os_TE_486532 Chr3 32282317 32283281 - SZ-9LTR 965 0.3329 (986/2962) 1 Intact * Os_TE_486520 Chr3 32281284 32281283 + RETRO2_LTR 12874 0.0354 (105/2964) 0 * * Os_TE_486507 Chr3 32275330 32275331 + COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * Os_TE_486506 Os_TE_486506 Chr3 32275326 32275325 - COPIA2-LTR_OS 6433 0.0003 (1/2982) 0 * Os_TE_486507 Os_TE_486486 Chr3 32266565 32266566 + COPI2_LTR 4733 0.0003 (1/2972) 0 * * Os_TE_486457 Chr3 32261843 32261844 - COPIA2-LTR_OS 6433 0.0003 (1/2938) 0 * * Os_TE_486441 Chr3 32250873 32250872 + ORSgTEMT01701861 113 0.0017 (5/2986) 0 * * Os_TE_486361 Chr3 32216661 32216662 - ORSgTETNOOT00053 263 0.0072 (21/2933) 0 * * Os_TE_486353 Chr3 32213280 32213281 + GAIJIN 147 0.0010 (3/2987) 0 * * Os_TE_486341 Chr3 32212450 32212451 + F770 284 0.0003 (1/2951) 0 * Os_TE_486340 Os_TE_486340 Chr3 32212448 32212447 - F770 284 0.0003 (1/2963) 0 * Os_TE_486341 Os_TE_486282 Chr3 32196802 32196801 - SZ-59_LTR 5600 0.0070 (21/2992) 0 * * Os_TE_486231 Chr3 32170961 32170960 - RIRE5-LTR_OS 6427 0.0003 (1/2992) 0 * * Os_TE_486230 Chr3 32170498 32170499 - COPIA2-LTR_OS 6433 0.0003 (1/2967) 0 * Os_TE_486229 Os_TE_486229 Chr3 32170494 32170493 + COPIA2-LTR_OS 6433 0.0003 (1/2968) 0 * Os_TE_486230 Os_TE_486196 Chr3 32145728 32145729 - ORSiTETNOOT00134 607 0.0729 (217/2976) 0 * Os_TE_486195 Os_TE_486195 Chr3 32145721 32145720 + TWIFBIG 3567 0.0729 (217/2976) 0 * Os_TE_486196 Os_TE_486188 Chr3 32138139 32138140 - NDNA1TNA_OS 334 0.0003 (1/2985) 0 * Os_TE_486187 Os_TE_486187 Chr3 32138137 32138136 + NDNA1TNA_OS 334 0.0003 (1/2992) 0 * Os_TE_486188 Os_TE_486141 Chr3 32119449 32119450 + SZ-62LTR 3649 0.6353 (1669/2627) 0 * Os_TE_486140 Os_TE_486140 Chr3 32119445 32119444 - SZ-62LTR 3649 0.6387 (1681/2632) 0 * Os_TE_486141 Os_TE_486139 Chr3 32113743 32113742 - STOWAWAY51_OS 246 0.0003 (1/2988) 0 * Os_TE_486138 Os_TE_486138 Chr3 32113737 32113738 + STOWAWAY51_OS 246 0.0003 (1/2984) 0 * Os_TE_486139 Os_TE_486137 Chr3 32113528 32113529 + OSTE33 1012 0.0509 (152/2984) 0 * Os_TE_486136 Os_TE_486136 Chr3 32113519 32113518 + OSTE33 1012 0.0510 (152/2983) 0 * Os_TE_486137 Os_TE_486127 Chr3 32108983 32108982 + AMYLTP 383 0.6281 (1853/2950) 0 * * Os_TE_486117 Chr3 32105267 32105268 - ORSgTEMT02400179 221 0.6249 (1849/2959) 0 * * Os_TE_486116 Chr3 32105062 32105063 - AMYLTP 383 0.0003 (1/2987) 0 * Os_TE_486115 Os_TE_486115 Chr3 32105058 32105057 + AMYLTP 383 0.0003 (1/2986) 0 * Os_TE_486116 Os_TE_486097 Chr3 32093653 32093654 + ORSiTERTOOT00296 5553 0.0003 (1/2986) 0 * Os_TE_486096 Os_TE_486096 Chr3 32093649 32093648 - SC-3_LTR 5748 0.0003 (1/2987) 0 * Os_TE_486097 Os_TE_486079 Chr3 32075324 32075325 + MPING 430 0.0017 (5/2978) 0 * Os_TE_486078 Os_TE_486078 Chr3 32075322 32075321 - MPING 430 0.0017 (5/2972) 0 * Os_TE_486079 Os_TE_486076 Chr3 32073951 32073952 - ORSgTETNOOT01930 140 0.0003 (1/2914) 0 * * Os_TE_486069 Chr3 32072745 32072746 + TESS 244 0.0003 (1/2991) 0 * Os_TE_486068 Os_TE_486068 Chr3 32072738 32072737 - TESS 244 0.0003 (1/2990) 0 * Os_TE_486069 Os_TE_486067 Chr3 32072483 32072482 - HARB-1_OS 5166 0.0003 (1/2998) 0 * Os_TE_486066 Os_TE_486066 Chr3 32072478 32072479 + HARB-1_OS 5166 0.0003 (1/2995) 0 * Os_TE_486067 Os_TE_486061 Chr3 32061622 32061623 + ORSgTEMT00600376 329 0.0044 (13/2978) 0 * Os_TE_486060 Os_TE_486060 Chr3 32061617 32061616 + ORSgTEMT00600272 361 0.0040 (12/2981) 0 * Os_TE_486061 Os_TE_486049 Chr3 32059303 32059304 + SUSU 279 0.0007 (2/2996) 0 * * Os_TE_486046 Chr3 32058912 32058911 + ORSgTEMT01601591 242 0.0003 (1/2998) 0 * * Os_TE_486026 Chr3 32050375 32050376 - ORSiTETNOOT00134 607 0.0007 (2/2998) 0 * Os_TE_486025 Os_TE_486025 Chr3 32050368 32050367 + TWIF 586 0.0007 (2/2998) 0 * Os_TE_486026 Os_TE_486022 Chr3 32049678 32049916 - ORSgTEMT01601432 239 0.3255 (956/2937) 1 Intact * Os_TE_485988 Chr3 32026765 32026766 - TELIA 141 0.0164 (49/2988) 0 * Os_TE_485987 Os_TE_485987 Chr3 32026757 32026756 + TELIA 141 0.0161 (48/2989) 0 * Os_TE_485988 Os_TE_485983 Chr3 32023751 32023752 + ORSgTETNOOT00221 261 0.4679 (1398/2988) 0.87 * * Os_TE_485979 Chr3 32023287 32023286 + STOWAWAY18_OS 216 0.0003 (1/2995) 0 * * Os_TE_485934 Chr3 32003316 32003317 + RETRO2_LTR 12874 0.0003 (1/2953) 0 * * Os_TE_485803 Chr3 31969214 31969215 - STOWAWAY51_OS 246 0.0003 (1/2981) 0 * * Os_TE_485787 Chr3 31963784 31963783 + ID-2 308 0.0020 (6/2987) 0 * * Os_TE_485786 Chr3 31963744 31963743 - STOWAWAY51_OS 246 0.0027 (8/2982) 0 * Os_TE_485785 Os_TE_485785 Chr3 31963738 31963739 - STOWAWAY51_OS 246 0.0030 (9/2985) 0 * Os_TE_485786 Os_TE_485781 Chr3 31960916 31960917 - ORSgTEMT00901327 242 0.0020 (6/2995) 0 * * Os_TE_485758 Chr3 31951447 31951446 + STOWAWAY51_OS 246 0.0124 (37/2990) 0 * Os_TE_485757 Os_TE_485757 Chr3 31951441 31951442 + ORSgTEMT01601591 242 0.0127 (38/2991) 0 * Os_TE_485758 Os_TE_485753 Chr3 31946018 31946019 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_485752 Os_TE_485752 Chr3 31946014 31946013 + COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_485753 Os_TE_485734 Chr3 31939544 31939543 + ORSgTETNOOT00221 261 0.6814 (2040/2994) 0 * * Os_TE_485694 Chr3 31927408 31927407 + COPIA2-LTR_OS 6433 0.0010 (3/2990) 0 * * Os_TE_485687 Chr3 31921643 31921642 + STOWAWAY51_OS 246 0.0003 (1/2985) 0 * Os_TE_485686 Os_TE_485686 Chr3 31921637 31921638 + ORSgTEMT01601591 242 0.0003 (1/2978) 0 * Os_TE_485687 Os_TE_485665 Chr3 31918082 31917844 - ORSgTEMT01601432 239 0.3226 (945/2929) 1 Intact Os_TE_485664 Os_TE_485664 Chr3 31917844 31918082 + ORSgTEMT01601983 238 0.3135 (911/2906) 1 Intact Os_TE_485665 Os_TE_485603 Chr3 31905932 31905933 + COPIA2-LTR_OS 6433 0.0007 (2/2999) 0 * * Os_TE_485601 Chr3 31905732 31905731 + ORSgTEMT01601591 242 0.0037 (11/2998) 0 * Os_TE_485600 Os_TE_485600 Chr3 31905729 31905730 + ORSgTEMT01601591 242 0.0037 (11/2999) 0 * Os_TE_485601 Os_TE_485596 Chr3 31903584 31903585 - MPING 430 0.0003 (1/2994) 0 * Os_TE_485595 Os_TE_485595 Chr3 31903582 31903581 + MPING 430 0.0003 (1/2996) 0 * Os_TE_485596 Os_TE_485588 Chr3 31900791 31900790 - HARB-N1_OS 2589 0.6801 (2020/2970) 0 * * Os_TE_485584 Chr3 31898852 31898853 - STOWAWAY51_OS 246 0.0003 (1/2981) 0 * * Os_TE_485580 Chr3 31895740 31895739 - RETRO2_LTR 12874 0.6069 (1814/2989) 0 * * Os_TE_485512 Chr3 31865085 31865084 + ORSgTEMT00100531 325 0.0793 (237/2989) 0 * Os_TE_485511 Os_TE_485511 Chr3 31865083 31865084 + NDNA1TNA_OS 334 0.0784 (234/2986) 0 * Os_TE_485512 Os_TE_485509 Chr3 31864316 31864315 - SZ-35LTR 3853 0.0073 (14/1913) 0 * * Os_TE_485494 Chr3 31853646 31853647 + TELIA 141 0.0003 (1/2988) 0 * * Os_TE_485466 Chr3 31847525 31847526 - COPIA2-LTR_OS 6433 0.0007 (2/2988) 0 * Os_TE_485465 Os_TE_485465 Chr3 31847521 31847520 + COPIA2-LTR_OS 6433 0.0007 (2/2986) 0 * Os_TE_485466 Os_TE_485450 Chr3 31841223 31841224 - MPING 430 0.0124 (37/2990) 0 * Os_TE_485449 Os_TE_485449 Chr3 31841221 31841220 + MPING 430 0.0124 (37/2990) 0 * Os_TE_485450 Os_TE_485448 Chr3 31841123 31841124 - INDITTO 263 0.0020 (6/2986) 0 * Os_TE_485447 Os_TE_485447 Chr3 31841121 31841120 + INDITTO 263 0.0020 (6/2988) 0 * Os_TE_485448 Os_TE_485375 Chr3 31790087 31790088 + RETRO2_LTR 12874 0.0734 (220/2996) 0 * Os_TE_485374 Os_TE_485374 Chr3 31790083 31790082 - RETRO2_LTR 12874 0.0757 (227/2998) 0 * Os_TE_485375 Os_TE_485370 Chr3 31787330 31787331 + ORSgTETNOOT00908 242 0.0003 (1/2999) 0 * * Os_TE_485353 Chr3 31770394 31770395 - COPIA2-LTR_OS 6433 0.0003 (1/2959) 0 * * Os_TE_485266 Chr3 31733983 31733984 + AMYLTP 383 0.0013 (4/2968) 0 * Os_TE_485265 Os_TE_485265 Chr3 31733975 31733974 - AMYLTP 383 0.0020 (6/2968) 0 * Os_TE_485266 Os_TE_485263 Chr3 31733273 31733274 + ORSgTEMT00800058 376 0.0014 (4/2789) 0 * Os_TE_485260 Os_TE_485260 Chr3 31733259 31733258 - AMYLTP 383 0.0701 (209/2982) 0 * Os_TE_485263 Os_TE_485252 Chr3 31724848 31724847 + ORSgTEMT01601591 242 0.0769 (230/2990) 0 * Os_TE_485251 Os_TE_485251 Chr3 31724845 31724846 + ORSgTEMT01601591 242 0.0688 (204/2966) 0 * Os_TE_485252 Os_TE_485248 Chr3 31723143 31723142 + MPING 430 0.0003 (1/2991) 0 * * Os_TE_485231 Chr3 31714059 31714060 + COPIA2-LTR_OS 6433 0.0017 (5/2988) 0 * Os_TE_485230 Os_TE_485230 Chr3 31714055 31714054 - COPIA2-LTR_OS 6433 0.0020 (6/2985) 0 * Os_TE_485231 Os_TE_485227 Chr3 31712411 31712410 - F770 284 0.0003 (1/2970) 0 * * Os_TE_485225 Chr3 31712005 31712006 + CASTAWAY 364 0.0020 (6/2988) 0 * * Os_TE_485219 Chr3 31709658 31709657 + RIREX_LTR 8828 0.0008 (2/2660) 0 * * Os_TE_485196 Chr3 31696841 31696842 + HARB-1_OS 5166 0.0003 (1/2876) 0 * * Os_TE_485191 Chr3 31691770 31691771 + ORSgTERT00200981 4035 0.0003 (1/2991) 0 * * Os_TE_485184 Chr3 31689661 31689662 + OSTE33 1012 0.0007 (2/2974) 0 * Os_TE_485183 Os_TE_485183 Chr3 31689652 31689651 + OSTE33 1012 0.0007 (2/2976) 0 * Os_TE_485184 Os_TE_485161 Chr3 31674599 31674600 + TWIFBIG 3567 0.0007 (2/2971) 0 * Os_TE_485160 Os_TE_485160 Chr3 31674592 31674591 - ORSiTETNOOT00216 3569 0.0007 (2/2973) 0 * Os_TE_485161 Os_TE_485145 Chr3 31671460 31671461 - SPMLIKE 10989 0.0007 (2/2964) 0 * * Os_TE_485143 Chr3 31671042 31670775 + ORSgTEMT06100010 269 0.4968 (1490/2999) 1 Intact Os_TE_485140 Os_TE_485140 Chr3 31670775 31671042 - ORSgTEMT06100010 269 0.4968 (1490/2999) 1 Intact Os_TE_485143 Os_TE_485139 Chr3 31669886 31669887 - MPING 430 0.0003 (1/2977) 0 * Os_TE_485138 Os_TE_485138 Chr3 31669884 31669883 + MPING 430 0.0003 (1/2979) 0 * Os_TE_485139 Os_TE_485135 Chr3 31669264 31669265 + RIREX_LTR 8828 0.0010 (3/2999) 0 * Os_TE_485134 Os_TE_485134 Chr3 31669260 31669259 - RIREX_LTR 8828 0.0010 (3/2999) 0 * Os_TE_485135 Os_TE_485133 Chr3 31668876 31668877 + INDITTO 263 0.3497 (1047/2994) 0 * Os_TE_485132 Os_TE_485132 Chr3 31668874 31668873 - INDITTO 263 0.3501 (1047/2991) 0 * Os_TE_485133 Os_TE_485131 Chr3 31668408 31668409 + RIREX_LTR 8828 0.0003 (1/2908) 0 * Os_TE_485130 Os_TE_485130 Chr3 31668404 31668403 - RIREX_LTR 8828 0.0003 (1/2902) 0 * Os_TE_485131 Os_TE_485121 Chr3 31666810 31666811 + INDITTO 263 0.0013 (4/2992) 0 * Os_TE_485120 Os_TE_485120 Chr3 31666808 31666807 - INDITTO 263 0.0013 (4/2994) 0 * Os_TE_485121 Os_TE_485109 Chr3 31660251 31660252 + ORSgTETNOOT00032 218 0.0007 (2/2975) 0 * * Os_TE_485064 Chr3 31641491 31637632 - RETROSAT4_LTR 13504 0.4906 (1458/2972) 1 Solo_LTR Os_TE_485062 Os_TE_485062 Chr3 31637632 31641491 + SZ-35LTR 3853 0.4783 (1401/2929) 1 Intact Os_TE_485064 Os_TE_485059 Chr3 31635144 31635145 + ORSiTERTOOT00226 792 0.0028 (8/2853) 0 * Os_TE_485058 Os_TE_485058 Chr3 31635140 31635139 - SZ-22_LTR 4403 0.0031 (9/2884) 0 * Os_TE_485059 Os_TE_485047 Chr3 31633339 31633340 + F770 284 0.0003 (1/2985) 0 * * Os_TE_485045 Chr3 31633140 31633139 - ORSgTETNOOT00477 252 0.0070 (21/2990) 0 * Os_TE_485044 Os_TE_485044 Chr3 31633138 31633139 + ORSgTETNOOT01313 249 0.0074 (22/2991) 0 * Os_TE_485045 Os_TE_484983 Chr3 31602165 31602166 - ORSgTEMT02400179 221 0.4362 (1303/2987) 0 * Os_TE_484982 Os_TE_484982 Chr3 31602164 31602163 - TYPEM 227 0.4363 (1304/2989) 0 * Os_TE_484983 Os_TE_484979 Chr3 31599767 31599768 + ORSgTETNOOT01998 254 0.0003 (1/2991) 0 * Os_TE_484978 Os_TE_484978 Chr3 31599765 31599764 - ORSgTETNOOT00754 253 0.0003 (1/2987) 0 * Os_TE_484979 Os_TE_484945 Chr3 31590168 31590169 - RIREX_LTR 8828 0.0010 (3/2912) 0 * Os_TE_484944 Os_TE_484944 Chr3 31590164 31590163 + RIREX_LTR 8828 0.0010 (3/2898) 0 * Os_TE_484945 Os_TE_484923 Chr3 31582507 31582508 - INDITTO 263 0.0446 (132/2962) 0 * Os_TE_484922 Os_TE_484922 Chr3 31582505 31582504 + INDITTO 263 0.0476 (141/2965) 0 * Os_TE_484923 Os_TE_484919 Chr3 31581410 31581411 - MPING 430 0.0003 (1/2992) 0 * Os_TE_484918 Os_TE_484918 Chr3 31581408 31581407 + MPING 430 0.0003 (1/2996) 0 * Os_TE_484919 Os_TE_484917 Chr3 31581004 31581005 - MPING 430 0.0003 (1/2998) 0 * Os_TE_484916 Os_TE_484916 Chr3 31581002 31581001 + MPING 430 0.0003 (1/2999) 0 * Os_TE_484917 Os_TE_484912 Chr3 31579780 31579779 - ORSgTEMT02400179 221 0.0007 (2/2886) 0 * Os_TE_484911 Os_TE_484911 Chr3 31579777 31579778 - TYPEM 227 0.0007 (2/2900) 0 * Os_TE_484912 Os_TE_484907 Chr3 31578954 31578955 + SETARIA2 1142 0.0658 (197/2993) 0 * Os_TE_484906 Os_TE_484906 Chr3 31578950 31578949 + SETARIA2 1142 0.0657 (196/2985) 0 * Os_TE_484907 Os_TE_484848 Chr3 31570181 31570182 + ORSgTETNOOT01834 251 0.0944 (282/2988) 0 * Os_TE_484847 Os_TE_484847 Chr3 31570179 31570178 + ORSgTETNOOT01834 251 0.0950 (283/2979) 0 * Os_TE_484848 Os_TE_484844 Chr3 31568292 31568293 + SC-8_LTR 4951 0.0007 (2/2989) 0 * Os_TE_484843 Os_TE_484843 Chr3 31568288 31568287 - SC-8_LTR 4951 0.0003 (1/2987) 0 * Os_TE_484844 Os_TE_484840 Chr3 31565204 31565205 + AMYLTP 383 0.0020 (6/2997) 0 * Os_TE_484839 Os_TE_484839 Chr3 31565195 31565194 - AMYLTP 383 0.0020 (6/2997) 0 * Os_TE_484840 Os_TE_484832 Chr3 31559746 31559331 + ORSgTEMT00300122 416 0.5096 (1509/2961) 1 Intact * Os_TE_484814 Chr3 31551925 31551926 + ORSgTEMT01601591 242 0.0004 (1/2663) 0 * * Os_TE_484802 Chr3 31550006 31550007 + DS-RICE4N 715 0.3483 (1044/2997) 0 * Os_TE_484801 Os_TE_484801 Chr3 31549999 31549998 + DS-RICE4N 715 0.3388 (1011/2984) 0 * Os_TE_484802 Os_TE_484800 Chr3 31549998 31549999 + ORSiTETN00100018 738 0.3482 (1043/2995) 0 * * Os_TE_484797 Chr3 31548629 31548628 - RETROSAT4_LTR 13504 0.0007 (2/2786) 0 * * Os_TE_484775 Chr3 31532097 31532096 - STOWAWAY51_OS 246 0.0003 (1/2994) 0 * Os_TE_484774 Os_TE_484774 Chr3 31532091 31532092 + STOWAWAY51_OS 246 0.0003 (1/2995) 0 * Os_TE_484775 Os_TE_484773 Chr3 31530097 31530098 + COPI2_LTR 4733 0.0043 (13/2999) 0 * Os_TE_484772 Os_TE_484772 Chr3 31530093 31530092 - COPI2_LTR 4733 0.0043 (13/2999) 0 * Os_TE_484773 Os_TE_484759 Chr3 31517377 31517378 + CASGRANDA 465 0.0127 (33/2598) 0 * * Os_TE_484755 Chr3 31517034 31517035 + ORSgTETNOOT00032 218 0.0191 (48/2508) 0 * * Os_TE_484747 Chr3 31504334 31504333 + TELIA 141 0.0003 (1/2993) 0 * * Os_TE_484720 Chr3 31494189 31494188 - INDITTO 263 0.3360 (1004/2988) 0 * * Os_TE_484717 Chr3 31492100 31492101 - COPIA2-LTR_OS 6433 0.0045 (4/892) 0 * Os_TE_484716 Os_TE_484716 Chr3 31492096 31492095 + COPIA2-LTR_OS 6433 0.0065 (5/775) 0 * Os_TE_484717 Os_TE_484689 Chr3 31484293 31483949 + NDNA2TNA_OS 346 0.5301 (1584/2988) 1 Intact Os_TE_484685 Os_TE_484685 Chr3 31483947 31484291 - NDNA2TNA_OS 346 0.5311 (1590/2994) 1 Intact Os_TE_484689 Os_TE_484676 Chr3 31475587 31475588 + INDITTO 263 0.0007 (2/2914) 0 * Os_TE_484675 Os_TE_484675 Chr3 31475585 31475584 - INDITTO 263 0.0007 (2/2917) 0 * Os_TE_484676 Os_TE_484672 Chr3 31470231 31470232 + SC-8_LTR 4951 0.0003 (1/2998) 0 * Os_TE_484671 Os_TE_484671 Chr3 31470227 31470226 - SC-8_LTR 4951 0.0003 (1/2999) 0 * Os_TE_484672 Os_TE_484633 Chr3 31444801 31444802 - INDITTO 263 0.0131 (39/2971) 0 * Os_TE_484632 Os_TE_484632 Chr3 31444799 31444798 - ORSgTETNOOT00053 263 0.0131 (39/2978) 0 * Os_TE_484633 Os_TE_484629 Chr3 31442688 31442689 + MPING 430 0.0013 (4/2995) 0 * Os_TE_484628 Os_TE_484628 Chr3 31442686 31442685 - MPING 430 0.0013 (4/2996) 0 * Os_TE_484629 Os_TE_484607 Chr3 31428084 31428085 - STOWAWAY51_OS 246 0.0003 (1/2975) 0 * * Os_TE_484574 Chr3 31424880 31424881 + MPING 430 0.0003 (1/2986) 0 * Os_TE_484573 Os_TE_484573 Chr3 31424878 31424877 - MPING 430 0.0003 (1/2993) 0 * Os_TE_484574 Os_TE_484557 Chr3 31421764 31421763 + ORSgTETNOOT01834 251 0.0452 (135/2989) 0 * * Os_TE_484551 Chr3 31420847 31420848 - SZ-32LTR 572 0.0003 (1/2993) 0 * * Os_TE_484529 Chr3 31406617 31406316 - ORSgTEMT00100797 337 0.7090 (2112/2979) 1 Intact Os_TE_484525 Os_TE_484525 Chr3 31406281 31406614 + NDNA2TNA_OS 346 0.7078 (2112/2984) 1 Intact Os_TE_484529 Os_TE_484492 Chr3 31382234 31382235 + MuDR3_OS 8604 0.2951 (881/2985) 0 * Os_TE_484491 Os_TE_484491 Chr3 31382226 31382225 - MuDR3_OS 8604 0.2871 (848/2954) 0 * Os_TE_484492 Os_TE_484485 Chr3 31376809 31376808 - SC-3_LTR 5748 0.0003 (1/2991) 0 * * Os_TE_484463 Chr3 31366381 31366382 + OSTE33 1012 0.0007 (2/2988) 0 * Os_TE_484462 Os_TE_484462 Chr3 31366372 31366371 - OSTE33 1012 0.0003 (1/2988) 0 * Os_TE_484463 Os_TE_484456 Chr3 31363678 31363679 - HARB-1_OS 5166 0.0013 (4/2989) 0 * Os_TE_484455 Os_TE_484455 Chr3 31363676 31363675 + HARB-1_OS 5166 0.0013 (4/2993) 0 * Os_TE_484456 Os_TE_484449 Chr3 31362768 31362767 + STOWAWAY51_OS 246 0.0007 (2/2954) 0 * Os_TE_484448 Os_TE_484448 Chr3 31362762 31362763 + ORSgTEMT01601591 242 0.0007 (2/2953) 0 * Os_TE_484449 Os_TE_484424 Chr3 31358858 31358859 + INDITTO 263 0.0017 (5/2993) 0 * Os_TE_484423 Os_TE_484423 Chr3 31358856 31358855 - INDITTO 263 0.0013 (4/2995) 0 * Os_TE_484424 Os_TE_484404 Chr3 31352584 31352583 - GLUTEL1LIKE 273 0.0021 (6/2926) 0 * * Os_TE_484385 Chr3 31343992 31343993 + RIREX_LTR 8828 0.0007 (2/2955) 0 * * Os_TE_484367 Chr3 31338359 31338360 + ORSiTERTOOT00381 4988 0.0003 (1/2981) 0 * Os_TE_484366 Os_TE_484366 Chr3 31338355 31338354 - SC-8_LTR 4951 0.0003 (1/2984) 0 * Os_TE_484367 Os_TE_484357 Chr3 31328493 31328494 - MPING 430 0.0003 (1/2966) 0 * Os_TE_484356 Os_TE_484356 Chr3 31328491 31328490 + MPING 430 0.0003 (1/2965) 0 * Os_TE_484357 Os_TE_484355 Chr3 31328463 31328464 + INDITTO 263 0.0017 (5/2967) 0 * Os_TE_484354 Os_TE_484354 Chr3 31328461 31328460 - INDITTO 263 0.0017 (5/2960) 0 * Os_TE_484355 Os_TE_484336 Chr3 31323255 31323254 - ORSgTEMT01700299 212 0.0003 (1/2883) 0 * * Os_TE_484307 Chr3 31318440 31318441 + NDNA1TNA_OS 334 0.0122 (36/2947) 0 * Os_TE_484306 Os_TE_484306 Chr3 31318438 31318437 - NDNA1TNA_OS 334 0.0136 (40/2936) 0 * Os_TE_484307 Os_TE_484305 Chr3 31318341 31318342 + MPING 430 0.0007 (2/2925) 0 * Os_TE_484304 Os_TE_484304 Chr3 31318339 31318338 - MPING 430 0.0007 (2/2917) 0 * Os_TE_484305 Os_TE_484279 Chr3 31308626 31308625 - HELITRON7_OS 10153 0.0013 (4/2996) 0 * Os_TE_484278 Os_TE_484278 Chr3 31308622 31308623 + HELITRON7_OS 10153 0.0013 (4/2993) 0 * Os_TE_484279 Os_TE_484268 Chr3 31305921 31305922 + ORSiTERTOOT00226 792 0.0003 (1/2982) 0 * * Os_TE_484263 Chr3 31302156 31302157 - SC-8_LTR 4951 0.0014 (4/2960) 0 * Os_TE_484262 Os_TE_484262 Chr3 31302152 31302151 + SC-8_LTR 4951 0.0013 (4/2968) 0 * Os_TE_484263 Os_TE_484211 Chr3 31281370 31281371 + ORSgTEMT00600272 361 0.0007 (2/2989) 0 * Os_TE_484210 Os_TE_484210 Chr3 31281365 31281364 + ORSgTEMT00600376 329 0.0007 (2/2988) 0 * Os_TE_484211 Os_TE_484062 Chr3 31220199 31220198 + STOWAWAY51_OS 246 0.0007 (2/2996) 0 * * Os_TE_484060 Chr3 31220050 31220051 + ORSgTETNOOT00908 242 0.0003 (1/2995) 0 * Os_TE_484059 Os_TE_484059 Chr3 31220043 31220042 + ORSgTETNOOT01219 231 0.0003 (1/2994) 0 * Os_TE_484060 Os_TE_484053 Chr3 31214883 31214884 - STOWAWAY44_OS 240 0.0003 (1/2996) 0 * * Os_TE_484052 Chr3 31214670 31214671 - AMYLTP 383 0.0909 (272/2993) 0 * Os_TE_484051 Os_TE_484051 Chr3 31214662 31214661 + AMYLTP 383 0.0925 (277/2996) 0 * Os_TE_484052 Os_TE_483987 Chr3 31196539 31196540 + ORSiTERTOOT00083 822 0.0003 (1/2942) 0 * * Os_TE_483955 Chr3 31165593 31165594 + TRUNCATOR 2918 0.4008 (1196/2984) 0 * * Os_TE_483950 Chr3 31164844 31159027 + COPIA2-LTR_OS 6433 0.5912 (1754/2967) 1 Intact Os_TE_483948 Os_TE_483948 Chr3 31158940 31164844 - COPIA2-LTR_OS 6433 0.5977 (1786/2988) 1 Intact Os_TE_483950 Os_TE_483923 Chr3 31148816 31148817 - SC-3_LTR 5748 0.0003 (1/2997) 0 * Os_TE_483922 Os_TE_483922 Chr3 31148812 31148811 + ORSiTERTOOT00296 5553 0.0003 (1/2996) 0 * Os_TE_483923 Os_TE_483920 Chr3 31146988 31146989 - SC-3_LTR 5748 0.0003 (1/2979) 0 * Os_TE_483919 Os_TE_483919 Chr3 31146984 31146983 + ORSiTERTOOT00296 5553 0.0003 (1/2980) 0 * Os_TE_483920 Os_TE_483917 Chr3 31145896 31145895 - YOUREN 286 0.0013 (4/2977) 0 * * Os_TE_483907 Chr3 31137800 31137801 - SC-3_LTR 5748 0.0003 (1/2966) 0 * Os_TE_483906 Os_TE_483906 Chr3 31137796 31137795 + ORSiTERTOOT00296 5553 0.0003 (1/2959) 0 * Os_TE_483907 Os_TE_483889 Chr3 31133455 31133456 - ORSgTETN00200001 10994 0.0003 (1/2907) 0 * Os_TE_483888 Os_TE_483888 Chr3 31133453 31133452 + SPMLIKE 10989 0.0003 (1/2861) 0 * Os_TE_483889 Os_TE_483875 Chr3 31119407 31119406 - INDITTO 263 0.0003 (1/2995) 0 * * Os_TE_483855 Chr3 31117072 31117071 + ORSgTETNOOT00908 242 0.0003 (1/2977) 0 * * Os_TE_483853 Chr3 31116731 31116732 + RIREX_LTR 8828 0.0017 (5/2990) 0 * * Os_TE_483814 Chr3 31103292 31103293 - INDITTO 263 0.0006 (1/1723) 0 * * Os_TE_483770 Chr3 31087503 31087502 - DNAUN1_OS 408 0.0184 (28/1518) 0 * * Os_TE_483769 Chr3 31086176 31086175 - ORSiTERTOOT00354 5370 0.0018 (5/2744) 0 * * Os_TE_483749 Chr3 31076433 31076432 - TYPEM 227 0.0013 (4/2987) 0 * Os_TE_483748 Os_TE_483748 Chr3 31076431 31076432 - ORSgTEMT02400248 224 0.0017 (5/2992) 0 * Os_TE_483749 Os_TE_483695 Chr3 31063662 31063663 - TYPEU1 380 0.0007 (2/2992) 0 * * Os_TE_483694 Chr3 31062719 31062720 + ORSgTEMT01701663 106 0.4571 (1368/2993) 0 * * Os_TE_483690 Chr3 31058142 31058141 - NDNA2TNA_OS 346 0.0017 (5/2991) 0 * * Os_TE_483684 Chr3 31055416 31055417 - ORSgTEMT00901138 254 0.4328 (1253/2895) 0 * * Os_TE_483681 Chr3 31051778 31051779 + ORSiTERTOOT00296 5553 0.0003 (1/2982) 0 * Os_TE_483680 Os_TE_483680 Chr3 31051774 31051773 - SC-3_LTR 5748 0.0003 (1/2984) 0 * Os_TE_483681 Os_TE_483679 Chr3 31051391 31051392 + ORSiTERTOOT00296 5553 0.0006 (1/1702) 0 * Os_TE_483678 Os_TE_483678 Chr3 31051387 31051386 - SC-3_LTR 5748 0.0006 (1/1687) 0 * Os_TE_483679 Os_TE_483671 Chr3 31049299 31049300 - F569 228 0.0007 (2/2993) 0 * Os_TE_483670 Os_TE_483670 Chr3 31049297 31049296 + F569 228 0.0007 (2/2990) 0 * Os_TE_483671 Os_TE_483645 Chr3 31045234 31045233 - SZ-66LTR 1223 0.0010 (3/2990) 0 * * Os_TE_483630 Chr3 31039776 31039777 - ORSgTERTOOT00030 3590 0.0007 (2/2982) 0 * * Os_TE_483613 Chr3 31030370 31030369 + F569 228 0.0007 (2/2990) 0 * * Os_TE_483611 Chr3 31027479 31027480 + TWIF 586 0.0044 (12/2752) 0 * Os_TE_483610 Os_TE_483610 Chr3 31027472 31027471 - ORSiTETNOOT00134 607 0.0030 (8/2710) 0 * Os_TE_483611 Os_TE_483606 Chr3 31026420 31026421 - RETROSAT2LTR 12796 0.0038 (11/2889) 0 * Os_TE_483605 Os_TE_483605 Chr3 31026418 31026417 + RETROSAT2LTR 12796 0.0038 (11/2915) 0 * Os_TE_483606 Os_TE_483599 Chr3 31022279 31022280 + ORSgTETNOOT00908 242 0.0003 (1/2994) 0 * * Os_TE_483589 Chr3 31019220 31019219 + ORSiTERTOOT00033 4884 0.0003 (1/2919) 0 * * Os_TE_483575 Chr3 31013572 31013573 + ORSiTERTOOT00296 5553 0.0037 (11/2983) 0 * Os_TE_483574 Os_TE_483574 Chr3 31013568 31013567 - SC-3_LTR 5748 0.0033 (10/2987) 0 * Os_TE_483575 Os_TE_483569 Chr3 31008164 31008165 - COPI2_LTR 4733 0.0003 (1/2997) 0 * Os_TE_483568 Os_TE_483568 Chr3 31008160 31008159 + COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_483569 Os_TE_483519 Chr3 30986384 30986385 - ORSgTETNOOT00754 253 0.0003 (1/2996) 0 * Os_TE_483518 Os_TE_483518 Chr3 30986380 30986379 + ORSgTETNOOT01686 252 0.0003 (1/2995) 0 * Os_TE_483519 Os_TE_483494 Chr3 30980165 30980164 + COPI2_LTR 4733 0.0503 (148/2940) 0 * * Os_TE_483493 Chr3 30980113 30980114 - TNR2A 152 0.0003 (1/2982) 0 * Os_TE_483492 Os_TE_483492 Chr3 30980097 30980096 + TNR2A 152 0.0003 (1/2979) 0 * Os_TE_483493 Os_TE_483490 Chr3 30979933 30979932 - COPIA2-LTR_OS 6433 0.0003 (1/2984) 0 * * Os_TE_483437 Chr3 30951345 30951346 + SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_483436 Os_TE_483436 Chr3 30951341 30951340 - SC-8_LTR 4951 0.0003 (1/2989) 0 * Os_TE_483437 Os_TE_483428 Chr3 30949708 30949709 - DS-RICE2N 613 0.0037 (11/2975) 0 * Os_TE_483427 Os_TE_483427 Chr3 30949701 30949700 + DS-RICE2N 613 0.0034 (10/2973) 0 * Os_TE_483428 Os_TE_483413 Chr3 30942954 30942953 + TWIFB1 3737 0.0003 (1/2981) 0 * * Os_TE_483374 Chr3 30926924 30926925 + RETRO2A_LTR 12895 0.0767 (229/2984) 0 * * Os_TE_483361 Chr3 30922264 30922265 + AMYLTP 383 0.0020 (6/2945) 0 * Os_TE_483360 Os_TE_483360 Chr3 30922256 30922255 - AMYLTP 383 0.0020 (6/2953) 0 * Os_TE_483361 Os_TE_483330 Chr3 30905465 30905466 - TRUNCATOR 2918 0.0007 (2/2998) 0 * * Os_TE_483327 Chr3 30902606 30902607 + COPIA2-LTR_OS 6433 0.0080 (24/2999) 0 * Os_TE_483326 Os_TE_483326 Chr3 30902602 30902601 - COPIA2-LTR_OS 6433 0.0080 (24/2998) 0 * Os_TE_483327 Os_TE_483321 Chr3 30894148 30894149 - SC-8_LTR 4951 0.0084 (25/2983) 0 * Os_TE_483320 Os_TE_483320 Chr3 30894144 30894143 + ORSiTERTOOT00381 4988 0.0084 (25/2984) 0 * Os_TE_483321 Os_TE_483297 Chr3 30881634 30881635 + AMYLTP 383 0.0007 (2/2986) 0 * * Os_TE_483282 Chr3 30879888 30879889 - SZ-55_LTR 10318 0.0005 (1/1956) 0 * Os_TE_483281 Os_TE_483281 Chr3 30879884 30879883 + SZ-55_LTR 10318 0.0003 (1/2990) 0 * Os_TE_483282 Os_TE_483278 Chr3 30879457 30878243 - RETRO2_LTR 12874 0.4732 (1396/2950) 1 Solo_LTR * Os_TE_483223 Chr3 30852512 30852513 - MPING 430 0.0003 (1/2991) 0 * Os_TE_483222 Os_TE_483222 Chr3 30852510 30852509 + MPING 430 0.0003 (1/2984) 0 * Os_TE_483223 Os_TE_483205 Chr3 30849143 30849144 - OLO24 345 0.0900 (268/2979) 0 * Os_TE_483204 Os_TE_483204 Chr3 30849141 30849140 + OLO24 345 0.0872 (260/2981) 0 * Os_TE_483205 Os_TE_483194 Chr3 30846533 30846534 + ORSgTETNOOT00032 218 0.0720 (212/2945) 0 * * Os_TE_483143 Chr3 30830914 30830915 + ORSiTERTOOT00296 5553 0.0007 (2/2992) 0 * Os_TE_483142 Os_TE_483142 Chr3 30830910 30830909 - SC-3_LTR 5748 0.0007 (2/2992) 0 * Os_TE_483143 Os_TE_483130 Chr3 30828033 30828034 + SPMLIKE 10989 0.0020 (6/2993) 0 * * Os_TE_483120 Chr3 30823737 30823738 - INDITTO 263 0.4676 (1391/2975) 0 * Os_TE_483119 Os_TE_483119 Chr3 30823735 30823734 + ORSgTETNOOT02316 263 0.4720 (1408/2983) 0 * Os_TE_483120 Os_TE_483101 Chr3 30808531 30808532 + SC-8_LTR 4951 0.0005 (1/1940) 0 * * Os_TE_483083 Chr3 30802125 30802126 + RETRO2_LTR 12874 0.3706 (1075/2901) 0 * Os_TE_483082 Os_TE_483082 Chr3 30802121 30802120 - RETRO2_LTR 12874 0.3745 (1100/2937) 0 * Os_TE_483083 Os_TE_483058 Chr3 30790048 30790049 - NDNA1TNA_OS 334 0.0007 (2/2880) 0 * Os_TE_483057 Os_TE_483057 Chr3 30790046 30790045 + NDNA1TNA_OS 334 0.0007 (2/2875) 0 * Os_TE_483058 Os_TE_483013 Chr3 30776726 30776727 + INDITTO 263 0.0077 (23/2983) 0 * Os_TE_483012 Os_TE_483012 Chr3 30776724 30776723 - INDITTO 263 0.0077 (23/2972) 0 * Os_TE_483013 Os_TE_482999 Chr3 30770667 30770668 + ORSiTERTOOT00296 5553 0.0003 (1/2964) 0 * Os_TE_482998 Os_TE_482998 Chr3 30770663 30770662 - SC-3_LTR 5748 0.0003 (1/2959) 0 * Os_TE_482999 Os_TE_482988 Chr3 30766325 30766324 - SC-3_LTR 5748 0.0017 (5/2990) 0 * * Os_TE_482986 Chr3 30764073 30764072 + ORSgTEMT00500578 129 0.0017 (5/2984) 0 * * Os_TE_482982 Chr3 30761991 30762203 + ORSgTEMT01601122 212 0.4746 (1419/2990) 1 Intact * Os_TE_482961 Chr3 30752539 30752540 + ORSiTERTOOT00381 4988 0.0044 (13/2982) 0 * Os_TE_482960 Os_TE_482960 Chr3 30752535 30752534 - SC-8_LTR 4951 0.0040 (12/2982) 0 * Os_TE_482961 Os_TE_482949 Chr3 30743852 30743853 - COPI2_LTR 4733 0.0003 (1/2865) 0 * * Os_TE_482947 Chr3 30741087 30741086 - SZ-22_LTR 4403 0.0004 (1/2788) 0 * * Os_TE_482945 Chr3 30740604 30740603 - ORSgTEMT02400092 225 0.0970 (272/2805) 0 * * Os_TE_482943 Chr3 30740572 30740573 - ORSgTEMT02400246 177 0.0007 (1/1510) 0 * * Os_TE_482933 Chr3 30734591 30734590 + F770 284 0.0931 (277/2976) 0 * * Os_TE_482931 Chr3 30733916 30733917 + INDITTO 263 0.0946 (281/2969) 0 * Os_TE_482930 Os_TE_482930 Chr3 30733914 30733913 - INDITTO 263 0.0943 (280/2968) 0 * Os_TE_482931 Os_TE_482885 Chr3 30720602 30720603 + HELITRON8_OS 8831 0.0007 (2/2977) 0 * * Os_TE_482880 Chr3 30719058 30712620 - COPIA2-LTR_OS 6433 0.5224 (1542/2952) 1 Intact Os_TE_482877 Os_TE_482877 Chr3 30712626 30719055 - ORSgTERT00100363 6446 0.5158 (1504/2916) 1 Intact Os_TE_482880 Os_TE_482857 Chr3 30697752 30697751 - MERMITE18B 1306 0.0017 (5/2962) 0 * * Os_TE_482850 Chr3 30692489 30692490 - MPING 430 0.0007 (2/2985) 0 * Os_TE_482849 Os_TE_482849 Chr3 30692487 30692486 + MPING 430 0.0007 (2/2986) 0 * Os_TE_482850 Os_TE_482845 Chr3 30685423 30685424 - SC-3_LTR 5748 0.0007 (2/2974) 0 * Os_TE_482844 Os_TE_482844 Chr3 30685419 30685418 + ORSiTERTOOT00296 5553 0.0007 (2/2974) 0 * Os_TE_482845 Os_TE_482837 Chr3 30681210 30681211 - ORSgTEMT00501568 147 0.0003 (1/2982) 0 * * Os_TE_482823 Chr3 30671646 30671645 + TRUNCATOR 2918 0.0380 (98/2577) 0 * * Os_TE_482804 Chr3 30667000 30666440 - HATOS1 3488 0.6596 (1436/2177) 1 Intact Os_TE_482802 Os_TE_482802 Chr3 30666440 30666999 + QINNIU 528 0.7587 (2261/2980) 1 Intact Os_TE_482804 Os_TE_482790 Chr3 30661498 30661497 - OSTE24 683 0.0003 (1/2997) 0 * * Os_TE_482783 Chr3 30657150 30657151 + SPMLIKE 10989 0.0003 (1/2990) 0 * * Os_TE_482762 Chr3 30649395 30649394 + CASTAWAY 364 0.0007 (2/2929) 0 * * Os_TE_482760 Chr3 30649388 30649387 + RETRO2_LTR 12874 0.0007 (2/2941) 0 * * Os_TE_482676 Chr3 30609947 30609948 - STOWAWAY51_OS 246 0.0007 (2/2903) 0 * * Os_TE_482671 Chr3 30604097 30604098 - COPI2_LTR 4733 0.0003 (1/2990) 0 * Os_TE_482670 Os_TE_482670 Chr3 30604093 30604092 + COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_482671 Os_TE_482667 Chr3 30603259 30603258 + COPI2_LTR 4733 0.0003 (1/2987) 0 * * Os_TE_482623 Chr3 30584650 30584651 - HARB-1_OS 5166 0.0285 (85/2981) 0 * Os_TE_482622 Os_TE_482622 Chr3 30584648 30584647 + HARB-1_OS 5166 0.0288 (86/2983) 0 * Os_TE_482623 Os_TE_482560 Chr3 30536198 30536197 - ORSiTERTOOT00214 738 0.0007 (2/2981) 0 * * Os_TE_482541 Chr3 30516538 30516539 - MPING 430 0.0017 (5/2999) 0 * Os_TE_482540 Os_TE_482540 Chr3 30516536 30516535 + MPING 430 0.0017 (5/2999) 0 * Os_TE_482541 Os_TE_482535 Chr3 30514502 30514503 + SC-8_LTR 4951 0.0003 (1/2998) 0 * Os_TE_482534 Os_TE_482534 Chr3 30514498 30514497 - SC-8_LTR 4951 0.0003 (1/2998) 0 * Os_TE_482535 Os_TE_482533 Chr3 30513533 30513532 + MIDWAY 985 0.0003 (1/2981) 0 * * Os_TE_482493 Chr3 30492774 30492773 + ORSgTETNOOT00908 242 0.0003 (1/2991) 0 * * Os_TE_482456 Chr3 30486551 30486550 + STOWAWAY51_OS 246 0.0054 (16/2962) 0 * Os_TE_482455 Os_TE_482455 Chr3 30486545 30486546 + ORSgTEMT01601591 242 0.0051 (15/2949) 0 * Os_TE_482456 Os_TE_482451 Chr3 30485051 30484691 + ORSgTEMT00600376 329 0.3265 (973/2980) 1 Intact * Os_TE_482444 Chr3 30476616 30476615 - RETROSAT3_LTR 11537 0.0007 (2/2774) 0 * * Os_TE_482405 Chr3 30460929 30460928 + ORSgTERTOOT00009 12852 0.0791 (231/2921) 0 * * Os_TE_482404 Chr3 30460709 30460708 + ORSgTEMT01601122 212 0.0361 (107/2966) 0 * Os_TE_482403 Os_TE_482403 Chr3 30460706 30460707 + ORSgTEMT01601122 212 0.0370 (110/2974) 0 * Os_TE_482404 Os_TE_482380 Chr3 30452528 30452529 + AMYLTP 383 0.0725 (214/2951) 0 * Os_TE_482379 Os_TE_482379 Chr3 30452519 30452518 - AMYLTP 383 0.0754 (224/2970) 0 * Os_TE_482380 Os_TE_482361 Chr3 30445926 30445927 - NDNA1TNA_OS 334 0.0007 (2/2887) 0 * * Os_TE_482355 Chr3 30443213 30443214 - SC-3_LTR 5748 0.0010 (3/2996) 0 * Os_TE_482354 Os_TE_482354 Chr3 30443209 30443208 + ORSiTERTOOT00296 5553 0.0007 (2/2997) 0 * Os_TE_482355 Os_TE_482332 Chr3 30429012 30429013 - ORSiTERTOOT00074 4935 0.0014 (4/2932) 0 * Os_TE_482331 Os_TE_482331 Chr3 30429008 30429007 + ORSiTERTOOT00074 4935 0.0014 (4/2929) 0 * Os_TE_482332 Os_TE_482319 Chr3 30425454 30425455 - ORSgTEMT00100582 334 0.4889 (1457/2980) 0 * Os_TE_482318 Os_TE_482318 Chr3 30425453 30425452 + NDNA1TNA_OS 334 0.4834 (1428/2954) 0 * Os_TE_482319 Os_TE_482317 Chr3 30425150 30425151 - COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * * Os_TE_482255 Chr3 30403967 30403966 + ORSgTEMT00501665 148 0.0010 (3/2998) 0 * * Os_TE_482236 Chr3 30399578 30399579 - COPIA2-LTR_OS 6433 0.0199 (32/1610) 0 * Os_TE_482235 Os_TE_482235 Chr3 30399574 30399573 + COPIA2-LTR_OS 6433 0.0107 (32/2978) 0 * Os_TE_482236 Os_TE_482191 Chr3 30379096 30379097 - TYPEM 227 0.0003 (1/2998) 0 * Os_TE_482190 Os_TE_482190 Chr3 30379095 30379094 - ORSgTEMT02400179 221 0.0003 (1/2997) 0 * Os_TE_482191 Os_TE_482187 Chr3 30376276 30376277 + JOUZHENA 607 0.0007 (1/1394) 0 * * Os_TE_482186 Chr3 30376259 30376260 + RETROSAT2LTR 12796 0.0007 (1/1384) 0 * * Os_TE_482185 Chr3 30375677 30375678 - RETROSAT3_LTR 11537 0.3056 (905/2961) 0 * * Os_TE_482130 Chr3 30353231 30353232 - MERMITE18B 1306 0.0011 (3/2855) 0 * * Os_TE_482117 Chr3 30348781 30348782 + OSTE21 1271 0.0003 (1/2983) 0 * * Os_TE_482097 Chr3 30343546 30343547 + CACTA-H 1152 0.0017 (5/2991) 0 * Os_TE_482096 Os_TE_482096 Chr3 30343544 30343543 - SPMLIKE 10989 0.0013 (4/2987) 0 * Os_TE_482097 Os_TE_482078 Chr3 30333631 30333632 + STOWAWAY47_OS 148 0.0006 (1/1583) 0 * * Os_TE_482054 Chr3 30315564 30315563 + ORSgTEMT00700017 386 0.0003 (1/2997) 0 * Os_TE_482053 Os_TE_482053 Chr3 30315555 30315556 + ORSgTEMT00700017 386 0.0003 (1/2997) 0 * Os_TE_482054 Os_TE_482019 Chr3 30298084 30298085 + ORSiTERTOOT00226 792 0.4521 (1355/2997) 0 * * Os_TE_481989 Chr3 30264227 30264228 - SC-3_LTR 5748 0.0374 (112/2991) 0 * Os_TE_481988 Os_TE_481988 Chr3 30264223 30264222 + ORSiTERTOOT00296 5553 0.0374 (112/2993) 0 * Os_TE_481989 Os_TE_481986 Chr3 30261516 30261623 + SINE1OS 127 0.3282 (974/2968) 1 Intact * Os_TE_481976 Chr3 30248728 30248727 - SZ-22_LTR 4403 0.0007 (2/2866) 0 * * Os_TE_481968 Chr3 30246821 30246822 - COPIA2-LTR_OS 6433 0.0004 (1/2409) 0 * * Os_TE_481881 Chr3 30208362 30208363 + OSTONOR1_LTR 6440 0.0003 (1/2989) 0 * Os_TE_481880 Os_TE_481880 Chr3 30208358 30208357 - OSTONOR1_LTR 6440 0.0003 (1/2988) 0 * Os_TE_481881 Os_TE_481862 Chr3 30192368 30192367 - COPI2_LTR 4733 0.0007 (2/2997) 0 * * Os_TE_481852 Chr3 30189713 30189712 - ORSgTEMT02400246 177 0.6874 (2056/2991) 0 * * Os_TE_481844 Chr3 30179105 30175987 + RETROSAT3_LTR 11537 0.3166 (937/2960) 1 Solo_LTR * Os_TE_481798 Chr3 30155286 30155287 + RETRO3_LTR 12751 0.0010 (3/2977) 0 * Os_TE_481797 Os_TE_481797 Chr3 30155282 30155281 - RETRO3_LTR 12751 0.0010 (3/2980) 0 * Os_TE_481798 Os_TE_481783 Chr3 30150252 30150251 - COPIA2-LTR_OS 6433 0.0003 (1/2950) 0 * * Os_TE_481758 Chr3 30137804 30137803 + ORSgTETNOOT00908 242 0.6845 (2044/2986) 0 * * Os_TE_481728 Chr3 30124299 30124300 - HATOS1 3488 0.6870 (2052/2987) 0 * * Os_TE_481636 Chr3 30075547 30075546 + ORSgTEMT00300122 416 0.0003 (1/2995) 0 * * Os_TE_481635 Chr3 30075539 30075538 + ORSgTEMT00100531 325 0.2384 (714/2995) 0 * * Os_TE_481634 Chr3 30075521 30075520 + ORSgTETNOOT00908 242 0.0004 (1/2350) 0 * * Os_TE_481617 Chr3 30072602 30072603 + COPI2_LTR 4733 0.0003 (1/2968) 0 * Os_TE_481616 Os_TE_481616 Chr3 30072598 30072597 - COPI2_LTR 4733 0.0003 (1/2958) 0 * Os_TE_481617 Os_TE_481614 Chr3 30072137 30072136 - COPI2_LTR 4733 0.0003 (1/2996) 0 * * Os_TE_481612 Chr3 30071455 30071456 + F770 284 0.0003 (1/2972) 0 * * Os_TE_481609 Chr3 30069592 30069593 - STOWAWAY1_OS 149 0.0003 (1/2875) 0 * * Os_TE_481601 Chr3 30063871 30063870 + ORSgTEMT00800058 376 0.0003 (1/2981) 0 * * Os_TE_481585 Chr3 30059088 30059089 - F770 284 0.0003 (1/2992) 0 * * Os_TE_481579 Chr3 30057304 30057303 - SZ-9LTR 965 0.0077 (23/2986) 0 * * Os_TE_481530 Chr3 30048957 30048958 + ORSiTERTOOT00161 1560 0.6856 (2045/2983) 0 * * Os_TE_481510 Chr3 30035810 30035811 + OSTONOR1_LTR 6440 0.0084 (25/2971) 0 * * Os_TE_481487 Chr3 30026809 30026810 - RIREX_LTR 8828 0.0003 (1/2996) 0 * Os_TE_481486 Os_TE_481486 Chr3 30026805 30026804 + RIREX_LTR 8828 0.0003 (1/2998) 0 * Os_TE_481487 Os_TE_481485 Chr3 30026671 30026672 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_481484 Os_TE_481484 Chr3 30026667 30026666 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_481485 Os_TE_481453 Chr3 30018116 30017022 - CACTA-H 1152 0.3753 (817/2177) 1 Intact Os_TE_481452 Os_TE_481452 Chr3 30017019 30018117 + CACTA-B 1103 0.3088 (889/2879) 1 Intact Os_TE_481453 Os_TE_481427 Chr3 30002406 30002405 + ORSiTERTOOT00034 791 0.0003 (1/2996) 0 * * Os_TE_481376 Chr3 29980652 29980651 - ORSgTEMT02400179 221 0.4185 (1248/2982) 0 * Os_TE_481375 Os_TE_481375 Chr3 29980649 29980650 + ORSgTEMT02400034 225 0.4170 (1243/2981) 0 * Os_TE_481376 Os_TE_481313 Chr3 29943640 29943641 - ORSgTETNOOT02433 264 0.0003 (1/2950) 0 * * Os_TE_481312 Chr3 29943417 29943418 + SC-8_LTR 4951 0.0007 (2/2986) 0 * Os_TE_481311 Os_TE_481311 Chr3 29943413 29943412 - SC-8_LTR 4951 0.0007 (2/2990) 0 * Os_TE_481312 Os_TE_481294 Chr3 29931353 29931354 + TWIFB1 3737 0.0003 (1/2979) 0 * * Os_TE_481261 Chr3 29911909 29911908 - TRUNCATOR 2918 0.0013 (4/2993) 0 * * Os_TE_481250 Chr3 29901215 29901216 - ORSiTERTOOT00354 5370 0.0023 (7/2988) 0 * Os_TE_481249 Os_TE_481249 Chr3 29901211 29901210 + ORSiTERTOOT00354 5370 0.0023 (7/2989) 0 * Os_TE_481250 Os_TE_481233 Chr3 29891976 29891977 + MUDRN3_OS 903 0.5318 (1546/2907) 0 * Os_TE_481232 Os_TE_481232 Chr3 29891968 29891967 + MUDRN3_OS 903 0.5386 (1590/2952) 0 * Os_TE_481233 Os_TE_481230 Chr3 29889846 29889845 - STOWAWAY51_OS 246 0.0007 (2/2978) 0 * * Os_TE_481207 Chr3 29883310 29883309 - ORSgTEMT02400148 214 0.0003 (1/2975) 0 * * Os_TE_481205 Chr3 29883104 29883103 - ORMOSIA 482 0.0017 (5/2982) 0 * * Os_TE_481147 Chr3 29864659 29864660 - MPING 430 0.0003 (1/2947) 0 * Os_TE_481146 Os_TE_481146 Chr3 29864657 29864656 + MPING 430 0.0003 (1/2930) 0 * Os_TE_481147 Os_TE_481129 Chr3 29859472 29859673 - ORSgTEMT02000063 217 0.3258 (971/2980) 1 Intact * Os_TE_481046 Chr3 29826250 29826251 - TELIA 141 0.0003 (1/2962) 0 * Os_TE_481045 Os_TE_481045 Chr3 29826242 29826241 + TELIA 141 0.0003 (1/2959) 0 * Os_TE_481046 Os_TE_481037 Chr3 29821144 29821145 + MIDWAY 985 0.0013 (4/2997) 0 * * Os_TE_481032 Chr3 29818921 29818922 + COPIA2-LTR_OS 6433 0.1078 (318/2949) 0 * Os_TE_481031 Os_TE_481031 Chr3 29818917 29818916 - COPIA2-LTR_OS 6433 0.1113 (330/2966) 0 * Os_TE_481032 Os_TE_481030 Chr3 29818864 29818865 - ORSiTERTOOT00074 4935 0.0003 (1/2972) 0 * * Os_TE_480969 Chr3 29802499 29802500 + MPING 430 0.0003 (1/2995) 0 * Os_TE_480968 Os_TE_480968 Chr3 29802497 29802496 - MPING 430 0.0003 (1/2992) 0 * Os_TE_480969 Os_TE_480959 Chr3 29800921 29800920 - RETROSAT3_LTR 11537 0.0003 (1/2924) 0 * * Os_TE_480926 Chr3 29783817 29783816 + COPI2_LTR 4733 0.0003 (1/2991) 0 * * Os_TE_480904 Chr3 29778550 29778549 + INDITTO 263 0.0085 (25/2934) 0 * * Os_TE_480899 Chr3 29773375 29773376 - GLUTEL1LIKE 273 0.0003 (1/2969) 0 * * Os_TE_480897 Chr3 29771352 29771353 - SC-3_LTR 5748 0.0003 (1/2970) 0 * Os_TE_480896 Os_TE_480896 Chr3 29771348 29771347 + ORSiTERTOOT00296 5553 0.0003 (1/2964) 0 * Os_TE_480897 Os_TE_480895 Chr3 29770804 29770805 + SC-8_LTR 4951 0.0007 (2/2929) 0 * Os_TE_480894 Os_TE_480894 Chr3 29770800 29770799 - SC-8_LTR 4951 0.0007 (2/2939) 0 * Os_TE_480895 Os_TE_480871 Chr3 29763210 29763209 + NDNA1TNA_OS 334 0.1767 (522/2954) 0 * * Os_TE_480866 Chr3 29760672 29760671 - SC-3_LTR 5748 0.0003 (1/2980) 0 * * Os_TE_480832 Chr3 29742346 29742347 - ORSgTEMT00100491 312 0.0003 (1/2925) 0 * * Os_TE_480827 Chr3 29733899 29733898 - MDM1 326 0.0003 (1/2942) 0 * * Os_TE_480816 Chr3 29725914 29725915 + SC-8_LTR 4951 0.0025 (7/2834) 0 * Os_TE_480815 Os_TE_480815 Chr3 29725910 29725909 - SC-8_LTR 4951 0.0025 (7/2813) 0 * Os_TE_480816 Os_TE_480754 Chr3 29701467 29701468 - RETRO1_LTR 8314 0.1396 (411/2944) 0 * * Os_TE_480740 Chr3 29700341 29687435 + ORSgTERTOOT00009 12852 0.3237 (927/2864) 1 Intact * Os_TE_480721 Chr3 29684134 29684133 - STOWAWAY51_OS 246 0.0010 (3/2940) 0 * Os_TE_480720 Os_TE_480720 Chr3 29684128 29684129 + STOWAWAY51_OS 246 0.0010 (3/2931) 0 * Os_TE_480721 Os_TE_480695 Chr3 29676404 29676403 - RPO_OS 1983 0.0010 (3/2979) 0 * * Os_TE_480661 Chr3 29665983 29665984 + RETROSAT4_LTR 13504 0.1320 (380/2879) 0 * Os_TE_480660 Os_TE_480660 Chr3 29665979 29665978 - RETROSAT4_LTR 13504 0.1437 (418/2909) 0 * Os_TE_480661 Os_TE_480637 Chr3 29657447 29657446 - COPI2_LTR 4733 0.0007 (2/2959) 0 * * Os_TE_480558 Chr3 29639254 29639114 + TELIA 141 0.0981 (291/2967) 1 Intact Os_TE_480557 Os_TE_480557 Chr3 29639114 29639254 - TELIA 141 0.0992 (295/2975) 1 Intact Os_TE_480558 Os_TE_480522 Chr3 29632887 29632888 - ORSgTEMT00600304 361 0.2034 (599/2945) 0 * * Os_TE_480512 Chr3 29628932 29628933 - MUDRN1_OS 764 0.0003 (1/2956) 0 * * Os_TE_480506 Chr3 29628054 29628055 + BUHUI 375 0.0003 (1/2971) 0 * * Os_TE_480500 Chr3 29627779 29627780 - TYPEM 227 0.0003 (1/2977) 0 * Os_TE_480499 Os_TE_480499 Chr3 29627778 29627777 - ORSgTEMT02400179 221 0.0003 (1/2976) 0 * Os_TE_480500 Os_TE_480491 Chr3 29624044 29624043 - ORSgTEMT01100012 373 0.0004 (1/2817) 0 * * Os_TE_480486 Chr3 29622968 29621804 + CACTA-B 1103 0.3158 (938/2970) 1 Intact Os_TE_480484 Os_TE_480484 Chr3 29621806 29622965 - CACTA-H 1152 0.3138 (932/2970) 1 Intact Os_TE_480486 Os_TE_480468 Chr3 29618696 29618697 + AMYLTP 383 0.0003 (1/2988) 0 * Os_TE_480467 Os_TE_480467 Chr3 29618688 29618687 - AMYLTP 383 0.0003 (1/2988) 0 * Os_TE_480468 Os_TE_480466 Chr3 29618544 29618545 + MPING 430 0.0003 (1/2989) 0 * Os_TE_480465 Os_TE_480465 Chr3 29618542 29618541 - MPING 430 0.0003 (1/2990) 0 * Os_TE_480466 Os_TE_480437 Chr3 29615066 29615065 - STOWAWAY44_OS 240 0.0191 (57/2980) 0 * Os_TE_480436 Os_TE_480436 Chr3 29615063 29615064 + STOWAWAY44_OS 240 0.0198 (59/2985) 0 * Os_TE_480437 Os_TE_480397 Chr3 29602468 29602469 - MPING 430 0.0033 (10/2991) 0 * Os_TE_480396 Os_TE_480396 Chr3 29602466 29602465 + MPING 430 0.0033 (10/2992) 0 * Os_TE_480397 Os_TE_480374 Chr3 29583852 29583851 - ORSgTEMT02000040 196 0.0013 (4/2993) 0 * * Os_TE_480369 Chr3 29582386 29581872 + DS-RICE3N 525 0.3533 (855/2420) 1 Intact * Os_TE_480345 Chr3 29576609 29576608 + ORSgTEMT00101341 314 0.1230 (364/2959) 0 * Os_TE_480344 Os_TE_480344 Chr3 29576607 29576608 - ORSgTEMT00100578 341 0.1297 (383/2953) 0 * Os_TE_480345 Os_TE_480340 Chr3 29574002 29572874 - ORSgTETN00200001 10994 0.3304 (989/2993) 1 Intact Os_TE_480338 Os_TE_480338 Chr3 29572871 29574003 + CACTA-B 1103 0.3253 (970/2982) 1 Intact Os_TE_480340 Os_TE_480325 Chr3 29570730 29570731 - RETROSAT2LTR 12796 0.0419 (125/2983) 0 * * Os_TE_480295 Chr3 29555925 29555926 + NDNA1TNA_OS 334 0.0952 (283/2974) 0 * Os_TE_480294 Os_TE_480294 Chr3 29555924 29555923 - NDNA1TNA_OS 334 0.0961 (286/2977) 0 * Os_TE_480295 Os_TE_480276 Chr3 29543062 29543063 - ORSiTEMT01000008 242 0.4574 (1370/2995) 0 * Os_TE_480275 Os_TE_480275 Chr3 29543060 29543059 + ORSiTEMT01000008 242 0.4538 (1357/2990) 0 * Os_TE_480276 Os_TE_480251 Chr3 29531699 29531700 - NDNA1TNA_OS 334 0.0003 (1/2870) 0 * * Os_TE_480249 Chr3 29531659 29531660 + ORSgTEMT00100531 325 0.4304 (1280/2974) 0 * * Os_TE_480248 Chr3 29530666 29530667 + ORSgTEMT00400010 151 0.0003 (1/2994) 0 * * Os_TE_480245 Chr3 29527282 29527283 - SC-3_LTR 5748 0.0003 (1/2997) 0 * * Os_TE_480236 Chr3 29524938 29524939 - MERMITE18B 1306 0.0017 (5/2931) 0 * * Os_TE_480228 Chr3 29522323 29522324 - CACTA-H 1152 0.2670 (799/2992) 0 * * Os_TE_480220 Chr3 29516449 29516594 - TNR2A 152 0.3049 (868/2847) 1 Intact * Os_TE_480219 Chr3 29516282 29516283 - TNR2A 152 0.0029 (8/2783) 0 * * Os_TE_480166 Chr3 29501154 29501155 + RIREX_LTR 8828 0.0007 (2/2968) 0 * Os_TE_480165 Os_TE_480165 Chr3 29501150 29501149 - RIREX_LTR 8828 0.0010 (3/2962) 0 * Os_TE_480166 Os_TE_480142 Chr3 29496342 29496343 + ORSgTETNOOT02316 263 0.0017 (5/2965) 0 * Os_TE_480141 Os_TE_480141 Chr3 29496341 29496340 + ORSgTETNOOT02406 265 0.0017 (5/2941) 0 * Os_TE_480142 Os_TE_480118 Chr3 29492037 29492038 + MPING 430 0.0003 (1/2982) 0 * Os_TE_480117 Os_TE_480117 Chr3 29492035 29492034 - MPING 430 0.0003 (1/2980) 0 * Os_TE_480118 Os_TE_480089 Chr3 29467445 29467299 + TNR2A 152 0.5151 (1484/2881) 1 Intact Os_TE_480088 Os_TE_480088 Chr3 29467299 29467443 - TNR2A 152 0.5156 (1487/2884) 1 Intact Os_TE_480089 Os_TE_480056 Chr3 29454711 29454365 - ORSgTEMT00100984 340 0.5114 (1526/2984) 1 Intact * Os_TE_480055 Chr3 29454047 29454362 - NDNA1TNA_OS 334 0.5490 (1547/2818) 1 Intact * Os_TE_480051 Chr3 29451034 29451035 - COPIA2-LTR_OS 6433 0.0013 (4/2978) 0 * Os_TE_480050 Os_TE_480050 Chr3 29451030 29451029 + COPIA2-LTR_OS 6433 0.0013 (4/2979) 0 * Os_TE_480051 Os_TE_480025 Chr3 29442992 29442993 + MPING 430 0.0003 (1/2975) 0 * Os_TE_480024 Os_TE_480024 Chr3 29442990 29442989 - MPING 430 0.0003 (1/2974) 0 * Os_TE_480025 Os_TE_480022 Chr3 29442394 29442395 + STOWAWAY21_OS 243 0.0003 (1/2966) 0 * * Os_TE_479997 Chr3 29439479 29439480 + ORSgTERT00200063 5773 0.0003 (1/2963) 0 * * Os_TE_479980 Chr3 29436227 29436226 - ORSgTEMT02400246 177 0.2017 (601/2980) 0 * Os_TE_479979 Os_TE_479979 Chr3 29436226 29436227 - TYPEM 227 0.2059 (614/2982) 0 * Os_TE_479980 Os_TE_479972 Chr3 29431741 29431742 + NDNA1TNA_OS 334 0.2866 (827/2886) 0 * Os_TE_479971 Os_TE_479971 Chr3 29431739 29431738 - NDNA1TNA_OS 334 0.2901 (859/2961) 0 * Os_TE_479972 Os_TE_479969 Chr3 29430025 29430026 + ORSgTERT00201346 4268 0.0004 (1/2600) 0 * * Os_TE_479966 Chr3 29423658 29423659 - SZ-55_LTR 10318 0.0020 (6/2991) 0 * * Os_TE_479956 Chr3 29420127 29420128 + JOUZHENA 607 0.0017 (5/2957) 0 * * Os_TE_479929 Chr3 29416658 29416657 + ORSgTETNOOT01834 251 0.0007 (2/2955) 0 * * Os_TE_479926 Chr3 29414389 29414390 - CLOUD-6 508 0.0013 (4/2993) 0 * Os_TE_479925 Os_TE_479925 Chr3 29414381 29414380 - CLOUD-6 508 0.0017 (5/2986) 0 * Os_TE_479926 Os_TE_479923 Chr3 29413601 29413602 - RIRE2_LTR 11306 0.2590 (731/2822) 0 * Os_TE_479922 Os_TE_479922 Chr3 29413597 29413596 + RIRE2_LTR 11306 0.2937 (866/2949) 0 * Os_TE_479923 Os_TE_479921 Chr3 29413567 29413568 - RIRE5-LTR_OS 6427 0.5047 (1504/2980) 0 * Os_TE_479920 Os_TE_479920 Chr3 29413560 29413559 + RIRE5-LTR_OS 6427 0.4689 (1336/2849) 0 * Os_TE_479921 Os_TE_479918 Chr3 29412843 29412844 - INDITTO 263 0.0038 (11/2886) 0 * * Os_TE_479915 Chr3 29412390 29412391 + ORSgTEMT00500260 149 0.5099 (1524/2989) 0 * * Os_TE_479889 Chr3 29405593 29405594 + RIREX_LTR 8828 0.2809 (842/2997) 0 * Os_TE_479888 Os_TE_479888 Chr3 29405589 29405588 - RIREX_LTR 8828 0.2809 (842/2997) 0 * Os_TE_479889 Os_TE_479886 Chr3 29405068 29405069 - INDITTO 263 0.3866 (1159/2998) 0 * Os_TE_479885 Os_TE_479885 Chr3 29405066 29405065 + INDITTO 263 0.3897 (1168/2997) 0 * Os_TE_479886 Os_TE_479883 Chr3 29404856 29404857 - TYPEM 227 0.0003 (1/2995) 0 * * Os_TE_479875 Chr3 29399460 29399461 + ORSiTERTOOT00381 4988 0.0003 (1/2995) 0 * * Os_TE_479787 Chr3 29365570 29365571 - RIRE3A_LTR 10580 0.0064 (19/2973) 0 * Os_TE_479786 Os_TE_479786 Chr3 29365566 29365565 + RIRE3A_LTR 10580 0.0067 (20/2973) 0 * Os_TE_479787 Os_TE_479784 Chr3 29365361 29341266 - ORSgTETN00200001 10994 0.4650 (1270/2731) 1 Intact Os_TE_479763 Os_TE_479763 Chr3 29341266 29365361 + SPMLIKE 10989 0.5179 (1545/2983) 1 Intact Os_TE_479784 Os_TE_479760 Chr3 29340572 29340571 - COPIA2-LTR_OS 6433 0.0003 (1/2980) 0 * * Os_TE_479724 Chr3 29323862 29323861 + INDITTO 263 0.0003 (1/2966) 0 * * Os_TE_479719 Chr3 29322021 29322022 + SETARIA 1402 0.2164 (640/2958) 0 * Os_TE_479718 Os_TE_479718 Chr3 29322013 29322012 - SETARIA1 1293 0.2247 (670/2982) 0 * Os_TE_479719 Os_TE_479715 Chr3 29321785 29321784 + CLOUD-7 495 0.0017 (5/2972) 0 * * Os_TE_479714 Chr3 29321624 29321623 + OSMAR1 5265 0.0017 (5/2970) 0 * Os_TE_479713 Os_TE_479713 Chr3 29321621 29321622 - OSMAR1 5265 0.0010 (3/2974) 0 * Os_TE_479714 Os_TE_479704 Chr3 29318636 29318637 - SC-8_LTR 4951 0.0003 (1/2998) 0 * Os_TE_479703 Os_TE_479703 Chr3 29318632 29318631 + SC-8_LTR 4951 0.0003 (1/2995) 0 * Os_TE_479704 Os_TE_479681 Chr3 29303649 29303648 + HARB-1_OS 5166 0.0220 (63/2863) 0 * * Os_TE_479669 Chr3 29298612 29298613 + SC-8_LTR 4951 0.0003 (1/2998) 0 * Os_TE_479668 Os_TE_479668 Chr3 29298608 29298607 - SC-8_LTR 4951 0.0003 (1/2998) 0 * Os_TE_479669 Os_TE_479650 Chr3 29288867 29288868 - ORSgTEMT00900790 250 0.0014 (4/2962) 0 * * Os_TE_479642 Chr3 29286826 29286827 + SZ-55_LTR 10318 0.2084 (625/2999) 0 * * Os_TE_479634 Chr3 29280143 29280144 - OSTE33 1012 0.0007 (2/2728) 0 * * Os_TE_479629 Chr3 29278644 29279250 - ORSiTETNOOT00134 607 0.4043 (1183/2926) 1 Intact * Os_TE_479612 Chr3 29255814 29255815 - ORSgTEMT02400179 221 0.0003 (1/2968) 0 * Os_TE_479611 Os_TE_479611 Chr3 29255813 29255812 - TYPEM 227 0.0003 (1/2959) 0 * Os_TE_479612 Os_TE_479578 Chr3 29240614 29240613 - NDNA2TNA_OS 346 0.3805 (1123/2951) 0 * * Os_TE_479577 Chr3 29240175 29240174 + ORSgTEMT01601591 242 0.0003 (1/2994) 0 * Os_TE_479576 Os_TE_479576 Chr3 29240172 29240173 + ORSgTEMT01601591 242 0.0003 (1/2991) 0 * Os_TE_479577 Os_TE_479575 Chr3 29240042 29240041 + STOWAWAY51_OS 246 0.0003 (1/2990) 0 * * Os_TE_479561 Chr3 29233540 29233541 + RPO_OS 1983 0.0017 (5/2950) 0 * * Os_TE_479546 Chr3 29227765 29227766 - ORSiTERTOOT00441 4741 0.0013 (4/2966) 0 * Os_TE_479545 Os_TE_479545 Chr3 29227761 29227760 + ORSiTERTOOT00441 4741 0.0013 (4/2968) 0 * Os_TE_479546 Os_TE_479544 Chr3 29227727 29227728 - COPIA2-LTR_OS 6433 0.0074 (22/2985) 0 * Os_TE_479543 Os_TE_479543 Chr3 29227723 29227722 + COPIA2-LTR_OS 6433 0.0070 (21/2986) 0 * Os_TE_479544 Os_TE_479526 Chr3 29218091 29218092 - COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_479525 Os_TE_479525 Chr3 29218087 29218086 + COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_479526 Os_TE_479506 Chr3 29205951 29205952 + RPO_OS 1983 0.0866 (253/2923) 0 * * Os_TE_479495 Chr3 29203773 29203774 - ORSiTETNOOT00134 607 0.0074 (22/2966) 0 * Os_TE_479494 Os_TE_479494 Chr3 29203766 29203765 + TWIF 586 0.0074 (22/2954) 0 * Os_TE_479495 Os_TE_479488 Chr3 29199236 29199237 + ORSgTETNOOT01668 244 0.0890 (264/2966) 0 * * Os_TE_479487 Chr3 29198882 29198881 + ORSgTEMT02400034 225 0.0591 (171/2892) 0 * Os_TE_479486 Os_TE_479486 Chr3 29198872 29198873 - ORSgTEMT02400246 177 0.0583 (166/2847) 0 * Os_TE_479487 Os_TE_479467 Chr3 29194824 29194825 + TEMPINDAS 4259 0.1964 (562/2861) 0 * Os_TE_479466 Os_TE_479466 Chr3 29194817 29194816 - TEMPINDAS 4259 0.1971 (579/2937) 0 * Os_TE_479467 Os_TE_479461 Chr3 29193749 29193750 + COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_479460 Os_TE_479460 Chr3 29193745 29193744 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_479461 Os_TE_479446 Chr3 29189677 29189678 + ORSgTEMT00500201 140 0.0004 (1/2834) 0 * * Os_TE_479441 Chr3 29188926 29188927 + TWIFBIG 3567 0.0060 (18/2983) 0 * Os_TE_479440 Os_TE_479440 Chr3 29188919 29188918 - ORSiTETNOOT00216 3569 0.0060 (18/2979) 0 * Os_TE_479441 Os_TE_479389 Chr3 29166053 29166054 - RETRO2_LTR 12874 0.1370 (404/2948) 0 * * Os_TE_479369 Chr3 29154828 29154829 + COPIA2-LTR_OS 6433 0.0010 (3/2986) 0 * Os_TE_479368 Os_TE_479368 Chr3 29154824 29154823 - COPIA2-LTR_OS 6433 0.0012 (3/2583) 0 * Os_TE_479369 Os_TE_479348 Chr3 29142032 29142033 - ORSgTEMT01601122 212 0.0003 (1/2974) 0 * * Os_TE_479323 Chr3 29129295 29129296 + ORSiTERTOOT00296 5553 0.0003 (1/2991) 0 * Os_TE_479322 Os_TE_479322 Chr3 29129291 29129290 - SC-3_LTR 5748 0.0003 (1/2993) 0 * Os_TE_479323 Os_TE_479303 Chr3 29117071 29117070 - STOWAWAY51_OS 246 0.0003 (1/2999) 0 * * Os_TE_479244 Chr3 29092720 29092721 - RIREX_LTR 8828 0.0031 (9/2939) 0 * * Os_TE_479242 Chr3 29089015 29089016 + GYPSY-A_LTR 8951 0.0050 (15/2989) 0 * Os_TE_479241 Os_TE_479241 Chr3 29089011 29089010 - GYPSY-A_LTR 8951 0.0047 (14/2991) 0 * Os_TE_479242 Os_TE_479215 Chr3 29071995 29071996 + TELIA 141 0.0058 (17/2930) 0 * * Os_TE_479164 Chr3 29049341 29049340 - COPI2_LTR 4733 0.0003 (1/2960) 0 * * Os_TE_479089 Chr3 29024231 29024230 + STOWAWAY51_OS 246 0.0004 (1/2342) 0 * * Os_TE_479088 Chr3 29024220 29024221 + TELIA 141 0.0003 (1/2950) 0 * Os_TE_479087 Os_TE_479087 Chr3 29024212 29024211 - TELIA 141 0.0003 (1/2960) 0 * Os_TE_479088 Os_TE_479069 Chr3 29011195 29011196 + COPIA2-LTR_OS 6433 0.0003 (1/2979) 0 * Os_TE_479068 Os_TE_479068 Chr3 29011191 29011190 - COPIA2-LTR_OS 6433 0.0003 (1/2981) 0 * Os_TE_479069 Os_TE_478980 Chr3 28956163 28956162 - ORSgTEMT01400014 209 0.0950 (284/2988) 0 * * Os_TE_478968 Chr3 28953450 28953449 - SZ-35LTR 3853 0.0036 (10/2798) 0 * * Os_TE_478952 Chr3 28948503 28948504 - EnSpm-13_OS 11171 0.0011 (3/2713) 0 * Os_TE_478951 Os_TE_478951 Chr3 28948501 28948500 + EnSpm-13_OS 11171 0.0011 (3/2725) 0 * Os_TE_478952 Os_TE_478869 Chr3 28919973 28919974 - COPIA2-LTR_OS 6433 0.0004 (1/2724) 0 * * Os_TE_478857 Chr3 28918847 28918848 + ORSiTERTOOT00291 11421 0.0920 (275/2988) 0 * Os_TE_478856 Os_TE_478856 Chr3 28918843 28918842 - ORSiTERTOOT00291 11421 0.0879 (262/2979) 0 * Os_TE_478857 Os_TE_478855 Chr3 28917981 28916526 - MERMITE18B 1306 0.8833 (1907/2159) 1 Intact * Os_TE_478844 Chr3 28915229 28915228 - STOWAWAY51_OS 246 0.0864 (252/2915) 0 * * Os_TE_478834 Chr3 28912166 28912165 + OSTE33 1012 0.0004 (1/2657) 0 * * Os_TE_478808 Chr3 28907069 28907070 + HARB-1_OS 5166 0.0004 (1/2745) 0 * * Os_TE_478806 Chr3 28906718 28906717 - MPING 430 0.0131 (39/2981) 0 * * Os_TE_478795 Chr3 28900724 28900723 - ORSgTEMT01602404 253 0.0906 (270/2979) 0 * Os_TE_478794 Os_TE_478794 Chr3 28900721 28900722 - ORSgTEMT01601768 238 0.0813 (241/2964) 0 * Os_TE_478795 Os_TE_478784 Chr3 28897920 28897919 - ORSgTETNOOT00118 134 0.0883 (262/2967) 0 * Os_TE_478783 Os_TE_478783 Chr3 28897918 28897919 + ORSgTEMT00500201 140 0.0899 (267/2970) 0 * Os_TE_478784 Os_TE_478781 Chr3 28897828 28897827 - ORSgTETNOOT00072 203 0.0003 (1/2919) 0 * * Os_TE_478754 Chr3 28893660 28893323 - ORSgTEMT00100272 356 0.7548 (2013/2667) 1 Intact * Os_TE_478745 Chr3 28892758 28892759 + ORSgTETNOOT00908 242 0.0920 (273/2969) 0 * * Os_TE_478740 Chr3 28891813 28891814 + ORSgTEMT01701016 130 0.0902 (270/2992) 0 * * Os_TE_478739 Chr3 28890284 28890285 - COPIA2-LTR_OS 6433 0.0003 (1/2983) 0 * Os_TE_478738 Os_TE_478738 Chr3 28890280 28890279 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_478739 Os_TE_478736 Chr3 28889607 28889608 - COPIA2-LTR_OS 6433 0.0027 (8/2991) 0 * Os_TE_478735 Os_TE_478735 Chr3 28889603 28889602 + COPIA2-LTR_OS 6433 0.0023 (7/2990) 0 * Os_TE_478736 Os_TE_478734 Chr3 28889026 28888787 + ORSgTEMT01400040 213 0.7291 (2172/2979) 1 Intact Os_TE_478729 Os_TE_478729 Chr3 28888785 28888986 + ORSgTEMT01400024 215 0.6965 (1873/2689) 1 Intact Os_TE_478734 Os_TE_478705 Chr3 28883208 28883055 - ORSgTEMT01701882 154 0.7418 (2206/2974) 1 Intact Os_TE_478704 Os_TE_478704 Chr3 28883055 28883208 - ORSgTEMT01701882 154 0.7465 (2117/2836) 1 Intact Os_TE_478705 Os_TE_478700 Chr3 28882122 28881918 - ORSgTEMT01700794 153 0.7285 (2163/2969) 1 Intact Os_TE_478699 Os_TE_478699 Chr3 28881917 28882122 + ORSgTEMT01701591 154 0.7271 (2153/2961) 1 Intact Os_TE_478700 Os_TE_478694 Chr3 28875577 28875578 - SZ-5LTR 1223 0.0005 (1/2147) 0 * * Os_TE_478692 Chr3 28875021 28874790 + ORSgTEMT01601143 237 0.7313 (2158/2951) 1 Intact Os_TE_478691 Os_TE_478691 Chr3 28874783 28875021 - ORSgTEMT01602413 239 0.7238 (2075/2867) 1 Intact Os_TE_478692 Os_TE_478684 Chr3 28873901 28873900 + ORSgTEMT00501987 127 0.2625 (770/2933) 0 * Os_TE_478683 Os_TE_478683 Chr3 28873900 28873901 + ORSgTEMT00502094 140 0.2813 (842/2993) 0 * Os_TE_478684 Os_TE_478674 Chr3 28868643 28868644 - ORSgTETNOOT02565 240 0.0902 (268/2970) 0 * * Os_TE_478662 Chr3 28864852 28864853 + HARB-1_OS 5166 0.0003 (1/2973) 0 * Os_TE_478661 Os_TE_478661 Chr3 28864850 28864849 - HARB-1_OS 5166 0.0003 (1/2976) 0 * Os_TE_478662 Os_TE_478648 Chr3 28858326 28858327 - SC-8_LTR 4951 0.0003 (1/2999) 0 * Os_TE_478647 Os_TE_478647 Chr3 28858322 28858321 + SC-8_LTR 4951 0.0003 (1/2998) 0 * Os_TE_478648 Os_TE_478632 Chr3 28846139 28846138 - SZ-40LTR 2465 0.0003 (1/2877) 0 * * Os_TE_478609 Chr3 28837422 28837423 - ORSgTETNOOT00591 258 0.0003 (1/2952) 0 * * Os_TE_478606 Chr3 28836268 28836269 + ORSgTEMT00600120 364 0.0017 (5/2991) 0 * Os_TE_478605 Os_TE_478605 Chr3 28836266 28836265 - CASTAWAY 364 0.0017 (5/2994) 0 * Os_TE_478606 Os_TE_478580 Chr3 28822491 28822492 + COPIA2-LTR_OS 6433 0.0030 (9/2993) 0 * Os_TE_478579 Os_TE_478579 Chr3 28822487 28822486 - COPIA2-LTR_OS 6433 0.0030 (9/2991) 0 * Os_TE_478580 Os_TE_478578 Chr3 28820481 28820482 + OSTE33 1012 0.1408 (422/2997) 0 * * Os_TE_478537 Chr3 28804619 28804620 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_478536 Os_TE_478536 Chr3 28804615 28804614 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_478537 Os_TE_478528 Chr3 28801036 28801037 + MDR2 6967 0.0372 (107/2879) 0 * Os_TE_478527 Os_TE_478527 Chr3 28801028 28801027 - MDR2 6967 0.0452 (135/2988) 0 * Os_TE_478528 Os_TE_478459 Chr3 28778190 28778189 - STOWAWAY47_OS 148 0.0013 (4/2987) 0 * * Os_TE_478440 Chr3 28768738 28768739 + COPI2_LTR 4733 0.0007 (2/2964) 0 * Os_TE_478439 Os_TE_478439 Chr3 28768734 28768733 - COPI2_LTR 4733 0.0007 (2/2980) 0 * Os_TE_478440 Os_TE_478438 Chr3 28766685 28766686 + SC-4_LTR 5218 0.0004 (1/2847) 0 * Os_TE_478437 Os_TE_478437 Chr3 28766681 28766680 - SC-4_LTR 5218 0.0004 (1/2831) 0 * Os_TE_478438 Os_TE_478413 Chr3 28762166 28762165 - ORSgTERT00201053 9237 0.0003 (1/2916) 0 * * Os_TE_478410 Chr3 28758139 28758140 - SC-8_LTR 4951 0.0027 (8/2997) 0 * * Os_TE_478382 Chr3 28743235 28743236 + NDNA2TNA_OS 346 0.0114 (33/2889) 0 * Os_TE_478381 Os_TE_478381 Chr3 28743233 28743232 - NDNA2TNA_OS 346 0.0117 (34/2897) 0 * Os_TE_478382 Os_TE_478368 Chr3 28738705 28738706 + RETRO1_LTR 8314 0.0049 (12/2426) 0 * * Os_TE_478346 Chr3 28728474 28728475 + RIREX_LTR 8828 0.0014 (4/2949) 0 * Os_TE_478345 Os_TE_478345 Chr3 28728470 28728469 - RIREX_LTR 8828 0.0014 (4/2943) 0 * Os_TE_478346 Os_TE_478341 Chr3 28727760 28726985 - MUDRN1_OS 764 0.7308 (2120/2901) 1 Intact Os_TE_478339 Os_TE_478339 Chr3 28726985 28727760 + MUDRN1_OS 764 0.7411 (2210/2982) 1 Intact Os_TE_478341 Os_TE_478331 Chr3 28724942 28724943 + ORSgTETNOOT01668 244 0.0044 (13/2967) 0 * * Os_TE_478293 Chr3 28691858 28691859 - ORSgTEMT01600639 228 0.0013 (4/2987) 0 * * Os_TE_478261 Chr3 28686039 28686038 + ORSgTEMT00100886 348 0.0007 (2/2986) 0 * * Os_TE_478236 Chr3 28670879 28670878 - HELITRON7_OS 10153 0.0040 (11/2743) 0 * * Os_TE_478232 Chr3 28669420 28669074 + NDNA2TNA_OS 346 0.7402 (2211/2987) 1 Intact Os_TE_478230 Os_TE_478230 Chr3 28669073 28669420 - NDNA2TNA_OS 346 0.7503 (2221/2960) 1 Intact Os_TE_478232 Os_TE_478228 Chr3 28669040 28669039 + Cassandra_OS-LTR 764 0.1484 (432/2912) 0 * * Os_TE_478187 Chr3 28657570 28657571 - RIREX_LTR 8828 0.0003 (1/2969) 0 * Os_TE_478186 Os_TE_478186 Chr3 28657566 28657565 + RIREX_LTR 8828 0.0003 (1/2986) 0 * Os_TE_478187 Os_TE_478177 Chr3 28653259 28653258 + RIREX_LTR 8828 0.0005 (1/2103) 0 * * Os_TE_478175 Chr3 28650033 28650034 - ORSiTERTOOT00291 11421 0.0004 (1/2838) 0 * * Os_TE_478174 Chr3 28648939 28648940 - TYPEU 362 0.0017 (5/2999) 0 * Os_TE_478173 Os_TE_478173 Chr3 28648931 28648930 - ORSgTEMT03000049 380 0.0017 (5/2999) 0 * Os_TE_478174 Os_TE_478146 Chr3 28633349 28633350 + INDITTO 263 0.0003 (1/2993) 0 * * Os_TE_478140 Chr3 28630317 28630318 - TRUNCATOR2_LTR 2904 0.0003 (1/2995) 0 * * Os_TE_478115 Chr3 28619078 28619079 - GYPSY-A_LTR 8951 0.1585 (475/2996) 0 * Os_TE_478114 Os_TE_478114 Chr3 28619074 28619073 + SZ-40LTR 2465 0.1601 (480/2998) 0 * Os_TE_478115 Os_TE_478104 Chr3 28617302 28617303 - ORSgTEMT01700216 124 0.0008 (2/2601) 0 * * Os_TE_478091 Chr3 28616530 28616531 - SUSU 279 0.0003 (1/2996) 0 * * Os_TE_478074 Chr3 28614850 28614851 + RIREX_LTR 8828 0.0353 (104/2949) 0 * Os_TE_478073 Os_TE_478073 Chr3 28614846 28614845 - RIREX_LTR 8828 0.0346 (102/2950) 0 * Os_TE_478074 Os_TE_478059 Chr3 28613528 28613529 - COPIA2-LTR_OS 6433 0.0004 (1/2742) 0 * * Os_TE_478050 Chr3 28611894 28611893 + STOWAWAY51_OS 246 0.0020 (6/2961) 0 * * Os_TE_478049 Chr3 28611888 28611889 + ORSgTEMT01601591 242 0.0024 (7/2955) 0 * Os_TE_478048 Os_TE_478048 Chr3 28611883 28611882 + ORSgTEMT01600726 235 0.0020 (6/2951) 0 * Os_TE_478049 Os_TE_478031 Chr3 28608105 28608106 - ORSgTEMT01601208 238 0.0008 (2/2647) -1 * * Os_TE_478018 Chr3 28602737 28602738 - SC-8_LTR 4951 0.0007 (2/2994) 0 * Os_TE_478017 Os_TE_478017 Chr3 28602733 28602732 + SC-8_LTR 4951 0.0007 (2/2994) 0 * Os_TE_478018 Os_TE_478012 Chr3 28599977 28599978 - SZ-4_LTR 5991 0.0007 (2/2984) 0 * Os_TE_478011 Os_TE_478011 Chr3 28599973 28599972 + SZ-4_LTR 5991 0.0007 (2/2988) 0 * Os_TE_478012 Os_TE_478009 Chr3 28599011 28599010 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * * Os_TE_477951 Chr3 28582073 28582074 - FOCUS 257 0.0013 (4/2993) 0 * * Os_TE_477950 Chr3 28581513 28581514 + INDITTO 263 0.1215 (364/2997) 0 * Os_TE_477949 Os_TE_477949 Chr3 28581511 28581510 - INDITTO 263 0.1217 (364/2991) 0 * Os_TE_477950 Os_TE_477939 Chr3 28578443 28578444 + NDNA1TNA_OS 334 0.0019 (5/2629) 0 * * Os_TE_477936 Chr3 28572429 28572430 - STOWAWAY44_OS 240 0.0003 (1/2973) 0 * * Os_TE_477863 Chr3 28550002 28550003 - ORSgTEMT00600085 364 0.1286 (385/2994) 0 * Os_TE_477862 Os_TE_477862 Chr3 28550000 28549999 + CASTAWAY 364 0.1267 (379/2992) 0 * Os_TE_477863 Os_TE_477821 Chr3 28539582 28539581 - OSLINE1-5 4688 0.0020 (5/2509) 0 * * Os_TE_477807 Chr3 28530679 28530680 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_477806 Os_TE_477806 Chr3 28530675 28530674 + COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_477807 Os_TE_477800 Chr3 28528167 28528168 + ORSgTEMT00600272 361 0.0013 (4/2993) 0 * Os_TE_477799 Os_TE_477799 Chr3 28528162 28528161 - ORSgTEMT00600478 361 0.0017 (5/2995) 0 * Os_TE_477800 Os_TE_477790 Chr3 28526656 28526657 + SZLTR 1249 0.0027 (8/2990) 0 * * Os_TE_477785 Chr3 28525269 28525270 - INDITTO 263 0.0003 (1/2998) 0 * Os_TE_477784 Os_TE_477784 Chr3 28525267 28525266 + INDITTO 263 0.0003 (1/2997) 0 * Os_TE_477785 Os_TE_477759 Chr3 28519222 28519223 - MPING 430 0.0003 (1/2977) 0 * Os_TE_477758 Os_TE_477758 Chr3 28519220 28519219 + MPING 430 0.0003 (1/2978) 0 * Os_TE_477759 Os_TE_477745 Chr3 28508831 28508832 + RETRO1_LTR 8314 0.0142 (42/2961) 0 * Os_TE_477744 Os_TE_477744 Chr3 28508827 28508826 - RETRO2A_LTR 12895 0.0132 (39/2962) 0 * Os_TE_477745 Os_TE_477729 Chr3 28496369 28496370 - MPING 430 0.0003 (1/2975) 0 * Os_TE_477728 Os_TE_477728 Chr3 28496367 28496366 + MPING 430 0.0003 (1/2980) 0 * Os_TE_477729 Os_TE_477724 Chr3 28494149 28494150 + F569 228 0.0015 (4/2711) 0 * Os_TE_477723 Os_TE_477723 Chr3 28494147 28494146 - F569 228 0.0019 (5/2672) 0 * Os_TE_477724 Os_TE_477722 Chr3 28493293 28493294 - RETRO1_LTR 8314 0.0048 (5/1045) -1 * * Os_TE_477706 Chr3 28491107 28491106 + ORSgTEMT01601591 242 0.0014 (4/2928) 0 * Os_TE_477705 Os_TE_477705 Chr3 28491101 28491102 + STOWAWAY51_OS 246 0.0014 (4/2935) 0 * Os_TE_477706 Os_TE_477695 Chr3 28489360 28489361 + TOUNJ-30 377 0.0010 (3/2920) 0 * Os_TE_477694 Os_TE_477694 Chr3 28489358 28489357 - TOUNJ-30 377 0.0010 (3/2926) 0 * Os_TE_477695 Os_TE_477684 Chr3 28484932 28484933 - RIRE2_LTR 11306 0.0127 (38/2985) 0 * Os_TE_477683 Os_TE_477683 Chr3 28484928 28484927 - ORSgTERT00201216 11284 0.0137 (41/2983) 0 * Os_TE_477684 Os_TE_477675 Chr3 28475806 28475807 + ORSiTERTOOT00296 5553 0.0003 (1/2989) 0 * Os_TE_477674 Os_TE_477674 Chr3 28475802 28475801 - SC-3_LTR 5748 0.0003 (1/2992) 0 * Os_TE_477675 Os_TE_477669 Chr3 28473763 28473764 + CASTAWAY-3 314 0.0017 (5/2984) 0 * Os_TE_477668 Os_TE_477668 Chr3 28473760 28473759 - CASTAWAY-3 314 0.0017 (5/2987) 0 * Os_TE_477669 Os_TE_477664 Chr3 28470255 28470254 - ORSgTEMT06100010 269 0.0003 (1/2987) 0 * * Os_TE_477634 Chr3 28457005 28462747 + COPIA2-LTR_OS 6433 0.3150 (920/2921) 1 Intact * Os_TE_477630 Chr3 28454828 28454829 - SC-8_LTR 4951 0.0003 (1/2974) 0 * Os_TE_477629 Os_TE_477629 Chr3 28454824 28454823 + SC-8_LTR 4951 0.0003 (1/2977) 0 * Os_TE_477630 Os_TE_477620 Chr3 28446511 28446512 + DITTO 244 0.0003 (1/2966) 0 * * Os_TE_477590 Chr3 28441276 28441275 + ORSgTETNOOT01219 231 0.0003 (1/2992) 0 * * Os_TE_477572 Chr3 28436545 28436546 + ORSgTETNOOT00908 242 0.0111 (33/2982) 0 * Os_TE_477571 Os_TE_477571 Chr3 28436538 28436537 + ORSgTETNOOT01219 231 0.0111 (33/2980) 0 * Os_TE_477572 Os_TE_477570 Chr3 28435876 28435877 + COPI2_LTR 4733 0.0003 (1/2970) 0 * Os_TE_477569 Os_TE_477569 Chr3 28435870 28435869 - COPI2_LTR 4733 0.0003 (1/2973) 0 * Os_TE_477570 Os_TE_477534 Chr3 28425449 28425450 - ORSiTERT00100062 5674 0.0007 (2/2996) 0 * Os_TE_477533 Os_TE_477533 Chr3 28425445 28425444 + OSTONOR1_LTR 6440 0.0007 (2/2998) 0 * Os_TE_477534 Os_TE_477514 Chr3 28415700 28415701 + RETRO2A_LTR 12895 0.0007 (2/2982) 0 * * Os_TE_477492 Chr3 28407789 28407788 + RETROSAT4_LTR 13504 0.0003 (1/2953) 0 * * Os_TE_477491 Chr3 28407699 28407700 + COPIA2-LTR_OS 6433 0.0007 (2/2994) 0 * * Os_TE_477474 Chr3 28402537 28402536 + STOWAWAY51_OS 246 0.0007 (2/2991) 0 * Os_TE_477473 Os_TE_477473 Chr3 28402531 28402532 - STOWAWAY51_OS 246 0.0007 (2/2993) 0 * Os_TE_477474 Os_TE_477461 Chr3 28398281 28398282 - COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_477460 Os_TE_477460 Chr3 28398277 28398276 + COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_477461 Os_TE_477456 Chr3 28394758 28394757 + ORSiTEMT01000008 242 0.0132 (38/2874) 0 * * Os_TE_477424 Chr3 28385531 28385530 + ORSgTEMT01601122 212 0.0109 (32/2933) 0 * * Os_TE_477422 Chr3 28385509 28385510 + RIREX_LTR 8828 0.0055 (16/2923) 0 * Os_TE_477421 Os_TE_477421 Chr3 28385505 28385504 - RIREX_LTR 8828 0.0058 (17/2912) 0 * Os_TE_477422 Os_TE_477397 Chr3 28379953 28379954 + ORSgTEMT01602181 239 0.0007 (2/2997) 0 * Os_TE_477396 Os_TE_477396 Chr3 28379948 28379947 - ORSgTEMT01601432 239 0.0007 (2/2996) 0 * Os_TE_477397 Os_TE_477371 Chr3 28373333 28373332 + OSTONOR1_LTR 6440 0.0007 (2/2942) 0 * * Os_TE_477362 Chr3 28369074 28369073 + ORSgTEMT01601934 207 0.0007 (2/2991) 0 * * Os_TE_477351 Chr3 28363581 28363582 + ORSgTETNOOT01219 231 0.0181 (54/2986) 0 * Os_TE_477350 Os_TE_477350 Chr3 28363573 28363572 + ORSgTETNOOT00908 242 0.0184 (55/2987) 0 * Os_TE_477351 Os_TE_477346 Chr3 28359104 28359105 + INDITTO 263 0.0007 (2/2993) 0 * Os_TE_477345 Os_TE_477345 Chr3 28359102 28359101 - INDITTO 263 0.0007 (2/2988) 0 * Os_TE_477346 Os_TE_477342 Chr3 28357837 28357838 + MPING 430 0.0007 (2/2990) 0 * Os_TE_477341 Os_TE_477341 Chr3 28357835 28357834 - MPING 430 0.0007 (2/2993) 0 * Os_TE_477342 Os_TE_477285 Chr3 28347040 28347039 + NDNA1TNA_OS 334 0.0030 (3/997) 0 * * Os_TE_477239 Chr3 28332150 28332151 - SC-8_LTR 4951 0.0003 (1/2995) 0 * Os_TE_477238 Os_TE_477238 Chr3 28332146 28332145 + SC-8_LTR 4951 0.0003 (1/2997) 0 * Os_TE_477239 Os_TE_477235 Chr3 28328840 28328841 - CACTA-Q 2268 0.0007 (2/2995) 0 * Os_TE_477234 Os_TE_477234 Chr3 28328838 28328837 + CACTA-Q 2268 0.0007 (2/2995) 0 * Os_TE_477235 Os_TE_477217 Chr3 28321486 28321487 + TESSBIG 4057 0.0047 (14/2963) 0 * * Os_TE_477208 Chr3 28311173 28311172 + ORSgTEMT01602288 241 0.0003 (1/2997) 0 * * Os_TE_477193 Chr3 28303791 28303790 + COPI2_LTR 4733 0.0003 (1/2987) 0 * * Os_TE_477182 Chr3 28301161 28301162 + ORSgTEMT00500385 153 0.0017 (5/2905) 0 * * Os_TE_477171 Chr3 28300223 28300224 + F770 284 0.0010 (3/2990) 0 * Os_TE_477170 Os_TE_477170 Chr3 28300221 28300220 - F770 284 0.0010 (3/2987) 0 * Os_TE_477171 Os_TE_477169 Chr3 28300164 28300163 - ORSgTEMT02400246 177 0.0003 (1/2992) 0 * Os_TE_477168 Os_TE_477168 Chr3 28300163 28300164 - TYPEM 227 0.0003 (1/2989) 0 * Os_TE_477169 Os_TE_477158 Chr3 28295004 28295005 - ORSgTERT00201216 11284 0.0194 (58/2997) 0 * Os_TE_477157 Os_TE_477157 Chr3 28295000 28294999 - RIRE2_LTR 11306 0.0197 (59/2996) 0 * Os_TE_477158 Os_TE_477156 Chr3 28294835 28294836 - RIREX_LTR 8828 0.0003 (1/2997) 0 * Os_TE_477155 Os_TE_477155 Chr3 28294831 28294830 + RIREX_LTR 8828 0.0003 (1/2997) 0 * Os_TE_477156 Os_TE_477147 Chr3 28289720 28289721 + RIREX_LTR 8828 0.0003 (1/2959) 0 * Os_TE_477146 Os_TE_477146 Chr3 28289716 28289715 - RIREX_LTR 8828 0.0003 (1/2967) 0 * Os_TE_477147 Os_TE_477102 Chr3 28276382 28276381 + CASTAWAY 364 0.0003 (1/2989) 0 * * Os_TE_477093 Chr3 28268657 28268377 + INDITTO 263 0.4692 (1401/2986) 1 Intact Os_TE_477091 Os_TE_477091 Chr3 28268377 28268641 - INDITTO 263 0.5591 (1410/2522) 1 Intact Os_TE_477093 Os_TE_477090 Chr3 28268346 28267978 + AMYLTP 383 0.5314 (1404/2642) 1 Intact * Os_TE_477080 Chr3 28266685 28266686 - MuDR3_OS 8604 0.0013 (4/2971) 0 * Os_TE_477079 Os_TE_477079 Chr3 28266677 28266676 - MuDR3_OS 8604 0.0013 (4/2963) 0 * Os_TE_477080 Os_TE_477073 Chr3 28264299 28264300 - RETRO1_LTR 8314 0.0007 (2/2982) 0 * Os_TE_477072 Os_TE_477072 Chr3 28264295 28264294 + RETRO1_LTR 8314 0.0007 (2/2985) 0 * Os_TE_477073 Os_TE_477059 Chr3 28258239 28258240 - SC-3_LTR 5748 0.0010 (3/2993) 0 * Os_TE_477058 Os_TE_477058 Chr3 28258235 28258234 + ORSiTERTOOT00296 5553 0.0007 (2/2991) 0 * Os_TE_477059 Os_TE_477057 Chr3 28256705 28256706 - MDM2 312 0.0010 (3/2959) 0 * * Os_TE_477056 Chr3 28256653 28256654 + ORSiTERTOOT00296 5553 0.0030 (9/2974) 0 * Os_TE_477055 Os_TE_477055 Chr3 28256649 28256648 - SC-3_LTR 5748 0.0030 (9/2974) 0 * Os_TE_477056 Os_TE_477025 Chr3 28245892 28245893 + STOWAWAY51_OS 246 0.6984 (1885/2699) 0 * * Os_TE_477011 Chr3 28243274 28243275 + RIREX_LTR 8828 0.0003 (1/2987) 0 * * Os_TE_477005 Chr3 28240380 28240381 - RETRO2_LTR 12874 0.5414 (1609/2972) 0 * Os_TE_477004 Os_TE_477004 Chr3 28240376 28240375 + RETRO2_LTR 12874 0.5452 (1633/2995) 0 * Os_TE_477005 Os_TE_476998 Chr3 28230381 28230382 + ORSiTERTOOT00296 5553 0.0013 (4/2992) 0 * Os_TE_476997 Os_TE_476997 Chr3 28230377 28230376 - SC-3_LTR 5748 0.0013 (4/2991) 0 * Os_TE_476998 Os_TE_476996 Chr3 28228584 28228585 - SZ-67LTR 1540 0.0259 (77/2968) 0 * * Os_TE_476987 Chr3 28227112 28227113 - Cassandra_OS-LTR 764 0.0003 (1/2969) 0 * * Os_TE_476986 Chr3 28226173 28226174 - ORSgTERT00201216 11284 0.0017 (5/2974) 0 * Os_TE_476985 Os_TE_476985 Chr3 28226169 28226168 - RIRE2_LTR 11306 0.0017 (5/2971) 0 * Os_TE_476986 Os_TE_476983 Chr3 28224154 28224155 - CLOUD 734 0.0017 (5/2974) 0 * Os_TE_476982 Os_TE_476982 Chr3 28224148 28224147 - CLOUD 734 0.0010 (3/2982) 0 * Os_TE_476983 Os_TE_476981 Chr3 28223900 28223901 - OSTONOR1_LTR 6440 0.0003 (1/2988) 0 * Os_TE_476980 Os_TE_476980 Chr3 28223896 28223895 + OSTONOR1_LTR 6440 0.0003 (1/2989) 0 * Os_TE_476981 Os_TE_476977 Chr3 28221450 28221449 + ORSgTEMT00100428 339 0.0013 (4/2965) 0 * Os_TE_476976 Os_TE_476976 Chr3 28221449 28221450 + NDNA1TNA_OS 334 0.0013 (4/2967) 0 * Os_TE_476977 Os_TE_476975 Chr3 28221220 28221221 - COPI2_LTR 4733 0.0003 (1/2996) 0 * * Os_TE_476939 Chr3 28197471 28197470 - RIRE3A_LTR 10580 0.0004 (1/2343) 0 * * Os_TE_476917 Chr3 28179540 28179541 - TYPEM 227 0.0761 (218/2866) 0 * Os_TE_476916 Os_TE_476916 Chr3 28179539 28179538 - ORSgTEMT02400179 221 0.0659 (188/2854) 0 * Os_TE_476917 Os_TE_476905 Chr3 28177864 28177863 - AMYLTP 383 0.1452 (433/2983) 0 * * Os_TE_476890 Chr3 28174099 28174100 + TWIF 586 0.0003 (1/2980) 0 * Os_TE_476889 Os_TE_476889 Chr3 28174092 28174091 - ORSiTETNOOT00134 607 0.0003 (1/2984) 0 * Os_TE_476890 Os_TE_476846 Chr3 28154965 28154966 - NDNA1TNA_OS 334 0.0013 (4/2982) 0 * Os_TE_476845 Os_TE_476845 Chr3 28154963 28154962 + NDNA1TNA_OS 334 0.0013 (4/2973) 0 * Os_TE_476846 Os_TE_476844 Chr3 28154673 28154674 - OSTE20 496 0.0043 (13/2989) 0 * * Os_TE_476822 Chr3 28146625 28146626 - OSTE33 1012 0.0010 (3/2966) 0 * * Os_TE_476810 Chr3 28141865 28141866 + OLO24 345 0.0003 (1/2979) 0 * Os_TE_476809 Os_TE_476809 Chr3 28141863 28141862 - OLO24 345 0.0003 (1/2981) 0 * Os_TE_476810 Os_TE_476796 Chr3 28137861 28137639 + ORSgTEMT02400014 229 0.2981 (890/2986) 1 Intact Os_TE_476795 Os_TE_476795 Chr3 28137637 28137854 - ORSgTEMT02400246 177 0.3016 (902/2991) 1 Intact Os_TE_476796 Os_TE_476786 Chr3 28128423 28128424 - ORSiTERT00200157 13230 0.0005 (1/1992) -1 * * Os_TE_476756 Chr3 28113338 28113339 - RIRE2_LTR 11306 0.0070 (21/2995) 0 * Os_TE_476755 Os_TE_476755 Chr3 28113334 28113333 + RIREX_LTR 8828 0.0073 (22/2996) 0 * Os_TE_476756 Os_TE_476750 Chr3 28107783 28107784 - INDITTO 263 0.0013 (4/2990) 0 * Os_TE_476749 Os_TE_476749 Chr3 28107781 28107780 + INDITTO 263 0.0013 (4/2989) 0 * Os_TE_476750 Os_TE_476743 Chr3 28104309 28104308 + STOWAWAY21_OS 243 0.0003 (1/2898) 0 * * Os_TE_476736 Chr3 28101115 28101114 - NDNA1TNA_OS 334 0.0144 (43/2984) 0 * * Os_TE_476734 Chr3 28100917 28100916 + COPI2_LTR 4733 0.0003 (1/2936) 0 * * Os_TE_476733 Chr3 28100621 28100622 + ORSgTETNOOT00908 242 0.0139 (41/2946) 0 * Os_TE_476732 Os_TE_476732 Chr3 28100616 28100615 + ORSgTETNOOT01219 231 0.0146 (43/2948) 0 * Os_TE_476733 Os_TE_476730 Chr3 28100445 28100446 + ORSgTETNOOT00908 242 0.0147 (43/2935) 0 * Os_TE_476729 Os_TE_476729 Chr3 28100438 28100437 + ORSgTETNOOT01219 231 0.0120 (35/2928) 0 * Os_TE_476730 Os_TE_476724 Chr3 28099016 28099015 - MuDR3_OS 8604 0.0003 (1/2968) 0 * * Os_TE_476722 Chr3 28098017 28098018 - ORSiTERTOOT00332 5395 0.0325 (97/2984) 0 * Os_TE_476721 Os_TE_476721 Chr3 28098013 28098012 + ORSiTERTOOT00332 5395 0.0322 (96/2982) 0 * Os_TE_476722 Os_TE_476716 Chr3 28097536 28097537 + RIREX_LTR 8828 0.0003 (1/2995) 0 * Os_TE_476715 Os_TE_476715 Chr3 28097532 28097531 - RIREX_LTR 8828 0.0003 (1/2993) 0 * Os_TE_476716 Os_TE_476704 Chr3 28091471 28091472 - RIRE2_LTR 11306 0.0017 (5/2989) 0 * Os_TE_476703 Os_TE_476703 Chr3 28091467 28091466 - ORSgTERT00201216 11284 0.0013 (4/2988) 0 * Os_TE_476704 Os_TE_476675 Chr3 28076034 28076033 - RIRE2_LTR 11306 0.0003 (1/2912) 0 * * Os_TE_476599 Chr3 28058424 28058423 + CLOUD-4 520 0.0003 (1/2945) 0 * * Os_TE_476593 Chr3 28057537 28057536 - DS-RICE2N 613 0.0257 (47/1832) 0 * * Os_TE_476588 Chr3 28056947 28056946 + Cassandra_OS-LTR 764 0.3638 (1067/2933) 0 * * Os_TE_476580 Chr3 28054609 28054610 - COPI2_LTR 4733 0.0010 (3/2994) 0 * Os_TE_476579 Os_TE_476579 Chr3 28054605 28054604 + COPI2_LTR 4733 0.0007 (2/2992) 0 * Os_TE_476580 Os_TE_476553 Chr3 28036155 28035881 - ORSgTEMT06100010 269 0.5326 (1578/2963) 1 Intact Os_TE_476549 Os_TE_476549 Chr3 28035881 28036155 + ORSgTEMT06100010 269 0.5196 (1526/2937) 1 Intact Os_TE_476553 Os_TE_476546 Chr3 28035456 28035455 + ORSiTERTOOT00226 792 0.0003 (1/2880) 0 * * Os_TE_476526 Chr3 28027155 28027156 + ORSgTEMT00101315 319 0.0003 (1/2911) 0 * * Os_TE_476517 Chr3 28023191 28023192 - SC-7_LTR 4431 0.0010 (3/2991) 0 * Os_TE_476516 Os_TE_476516 Chr3 28023187 28023186 + SC-7_LTR 4431 0.0010 (3/2988) 0 * Os_TE_476517 Os_TE_476512 Chr3 28019867 28019868 + COPIA2-LTR_OS 6433 0.0003 (1/2980) 0 * Os_TE_476511 Os_TE_476511 Chr3 28019863 28019862 - COPIA2-LTR_OS 6433 0.0009 (1/1054) 0 * Os_TE_476512 Os_TE_476482 Chr3 28003318 28003317 - OSTE14 885 0.0010 (3/2980) 0 * * Os_TE_476448 Chr3 27996346 27996347 + RIREX_LTR 8828 0.1349 (402/2979) 0 * Os_TE_476447 Os_TE_476447 Chr3 27996342 27996341 - RIREX_LTR 8828 0.1330 (396/2977) 0 * Os_TE_476448 Os_TE_476446 Chr3 27995494 27995493 - MuDR-5_OS 17471 0.0054 (16/2971) 0 * * Os_TE_476398 Chr3 27958763 27958762 + TRUNCATOR 2918 0.1315 (394/2996) 0 * Os_TE_476397 Os_TE_476397 Chr3 27958762 27958763 - TRUNCATOR 2918 0.1336 (400/2994) 0 * Os_TE_476398 Os_TE_476395 Chr3 27956500 27956501 - RIREX_LTR 8828 0.0053 (16/2998) 0 * * Os_TE_476314 Chr3 27923531 27923530 + RETRO2_LTR 12874 0.1320 (389/2947) 0 * * Os_TE_476312 Chr3 27923099 27923100 + ORSiTERTOOT00028 8600 0.0027 (8/2962) 0 * Os_TE_476311 Os_TE_476311 Chr3 27923095 27923094 - TRUNCATOR2_LTR 2904 0.0055 (8/1454) 0 * Os_TE_476312 Os_TE_476304 Chr3 27918874 27918873 + ORSgTETNOOT02019 240 0.0003 (1/2977) 0 * * Os_TE_476291 Chr3 27916383 27913376 + TRUNCATOR 2918 0.3543 (1058/2986) 1 Intact Os_TE_476285 Os_TE_476285 Chr3 27913371 27916383 - TRUNCATOR 2918 0.3489 (1040/2981) 1 Intact Os_TE_476291 Os_TE_476251 Chr3 27892558 27892559 - COPIA2-LTR_OS 6433 0.0063 (19/2994) 0 * Os_TE_476250 Os_TE_476250 Chr3 27892554 27892553 + COPIA2-LTR_OS 6433 0.0064 (19/2992) 0 * Os_TE_476251 Os_TE_476249 Chr3 27891933 27891934 + MPING 430 0.0003 (1/2991) 0 * Os_TE_476248 Os_TE_476248 Chr3 27891931 27891930 - MPING 430 0.0003 (1/2987) 0 * Os_TE_476249 Os_TE_476246 Chr3 27890379 27890378 + MPING 430 0.0003 (1/2971) 0 * * Os_TE_476237 Chr3 27888443 27888444 + COPIA2-LTR_OS 6433 0.0027 (8/2970) 0 * Os_TE_476236 Os_TE_476236 Chr3 27888439 27888438 - COPIA2-LTR_OS 6433 0.0027 (8/2958) 0 * Os_TE_476237 Os_TE_476234 Chr3 27888154 27888155 - COPIA2-LTR_OS 6433 0.0003 (1/2922) 0 * Os_TE_476233 Os_TE_476233 Chr3 27888150 27888149 + COPIA2-LTR_OS 6433 0.0004 (1/2850) 0 * Os_TE_476234 Os_TE_476229 Chr3 27887631 27887632 + ORSgTEMT01701491 162 0.0004 (1/2544) 0 * * Os_TE_476224 Chr3 27885088 27885087 - RETRO1_LTR 8314 0.1334 (396/2968) 0 * * Os_TE_476223 Chr3 27884044 27884043 + ORSgTEMT01601591 242 0.0003 (1/2924) 0 * * Os_TE_476214 Chr3 27877210 27877211 + SETARIA 1402 0.0003 (1/2978) 0 * * Os_TE_476213 Chr3 27876369 27876370 - SZLTR 1249 0.0062 (16/2596) 0 * Os_TE_476212 Os_TE_476212 Chr3 27876365 27876364 + RETRO2_LTR 12874 0.0062 (16/2581) 0 * Os_TE_476213 Os_TE_476194 Chr3 27866632 27866633 + SC-8_LTR 4951 0.0003 (1/2949) 0 * Os_TE_476193 Os_TE_476193 Chr3 27866628 27866627 - SC-8_LTR 4951 0.0003 (1/2945) 0 * Os_TE_476194 Os_TE_476159 Chr3 27851016 27851017 + RETROFIT2_LTR 4774 0.0030 (9/2989) 0 * Os_TE_476158 Os_TE_476158 Chr3 27851012 27851011 - RETROFIT2_LTR 4774 0.0017 (5/2990) 0 * Os_TE_476159 Os_TE_476095 Chr3 27817524 27817523 + ORSgTETNOOT00908 242 0.0021 (6/2882) 0 * * Os_TE_476077 Chr3 27805744 27805745 + DS-RICE3N 525 0.0007 (2/2945) 0 * * Os_TE_476076 Chr3 27805444 27805443 - ORSgTEMT00700002 381 0.0010 (3/2868) 0 * Os_TE_476075 Os_TE_476075 Chr3 27805436 27805437 + ORSgTEMT00700017 386 0.0010 (3/2903) 0 * Os_TE_476076 Os_TE_476061 Chr3 27800598 27800599 - CLOUD-6 508 0.0036 (5/1376) 0 * Os_TE_476060 Os_TE_476060 Chr3 27800590 27800589 - CLOUD-6 508 0.0036 (5/1383) 0 * Os_TE_476061 Os_TE_476056 Chr3 27800180 27792812 + RIREX_LTR 8828 0.7429 (1069/1439) 1 Intact Os_TE_476055 Os_TE_476055 Chr3 27792812 27800180 - RIREX_LTR 8828 0.7452 (1082/1452) 1 Intact Os_TE_476056 Os_TE_476035 Chr3 27786386 27786385 - RIREX_LTR 8828 0.0010 (3/2986) 0 * * Os_TE_476034 Chr3 27786288 27786289 - COPIA2-LTR_OS 6433 0.0027 (8/2982) 0 * Os_TE_476033 Os_TE_476033 Chr3 27786284 27786283 + COPIA2-LTR_OS 6433 0.0027 (8/2982) 0 * Os_TE_476034 Os_TE_476027 Chr3 27785033 27785032 + COPI2_LTR 4733 0.0003 (1/2990) 0 * * Os_TE_476023 Chr3 27782649 27782648 - ORSgTEMT01702346 154 0.0014 (4/2962) 0 * Os_TE_476022 Os_TE_476022 Chr3 27782646 27782647 + ORSgTEMT01702045 137 0.0014 (4/2777) 0 * Os_TE_476023 Os_TE_476020 Chr3 27782605 27782343 + INDITTO 263 0.3687 (1088/2951) 1 Intact Os_TE_476019 Os_TE_476019 Chr3 27782343 27782605 - INDITTO 263 0.3672 (1085/2955) 1 Intact Os_TE_476020 Os_TE_476017 Chr3 27781467 27781468 + SPMLIKE 10989 0.0728 (212/2913) 0 * Os_TE_476016 Os_TE_476016 Chr3 27781465 27781464 - ORSgTETN00200001 10994 0.0802 (238/2967) 0 * Os_TE_476017 Os_TE_476006 Chr3 27775022 27775023 - MPING 430 0.0017 (5/2996) 0 * Os_TE_476005 Os_TE_476005 Chr3 27775020 27775019 + MPING 430 0.0017 (5/2975) 0 * Os_TE_476006 Os_TE_476002 Chr3 27773925 27773926 + SINE1OS 127 0.0091 (27/2958) 0 * * Os_TE_475992 Chr3 27771523 27771522 + STOWAWAY50_OS 174 0.0087 (26/2984) 0 * * Os_TE_475908 Chr3 27744015 27744016 + COPIA2-LTR_OS 6433 0.0003 (1/2906) 0 * Os_TE_475907 Os_TE_475907 Chr3 27744011 27744010 - COPIA2-LTR_OS 6433 0.0003 (1/2916) 0 * Os_TE_475908 Os_TE_475902 Chr3 27742098 27742099 - MPING 430 0.0003 (1/2913) 0 * Os_TE_475901 Os_TE_475901 Chr3 27742096 27742095 + MPING 430 0.0003 (1/2954) 0 * Os_TE_475902 Os_TE_475886 Chr3 27730295 27730294 - NDNA1TNA_OS 334 0.0037 (11/2985) 0 * * Os_TE_475885 Chr3 27729166 27729167 + MPING 430 0.0003 (1/2977) 0 * Os_TE_475884 Os_TE_475884 Chr3 27729164 27729163 - MPING 430 0.0003 (1/2979) 0 * Os_TE_475885 Os_TE_475863 Chr3 27714758 27714757 + ORSgTEMT00901844 250 0.0017 (5/2991) 0 * Os_TE_475862 Os_TE_475862 Chr3 27714754 27714755 - ORSgTEMT00900099 250 0.0017 (5/2989) 0 * Os_TE_475863 Os_TE_475843 Chr3 27709862 27709863 - OLO24 345 0.0057 (17/2998) 0 * Os_TE_475842 Os_TE_475842 Chr3 27709860 27709859 + OLO24 345 0.0057 (17/2997) 0 * Os_TE_475843 Os_TE_475832 Chr3 27704398 27704399 - SZ-9LTR 965 0.0003 (1/2964) 0 * * Os_TE_475804 Chr3 27694866 27694867 + NDNA1TNA_OS 334 0.0003 (1/2993) 0 * Os_TE_475803 Os_TE_475803 Chr3 27694865 27694864 - ORSgTEMT00100799 337 0.0003 (1/2993) 0 * Os_TE_475804 Os_TE_475802 Chr3 27694835 27694834 + STOWAWAY51_OS 246 0.0013 (4/2991) 0 * Os_TE_475801 Os_TE_475801 Chr3 27694829 27694830 - STOWAWAY51_OS 246 0.0017 (5/2990) 0 * Os_TE_475802 Os_TE_475800 Chr3 27694765 27694766 + INDITTO 263 0.0007 (2/2993) 0 * * Os_TE_475788 Chr3 27693435 27693434 + STOWAWAY44_OS 240 0.0003 (1/2988) 0 * Os_TE_475787 Os_TE_475787 Chr3 27693432 27693433 - STOWAWAY44_OS 240 0.0003 (1/2988) 0 * Os_TE_475788 Os_TE_475781 Chr3 27689887 27689888 - SZ-35LTR 3853 0.0020 (6/2960) 0 * Os_TE_475780 Os_TE_475780 Chr3 27689883 27689882 + RETROSAT4_LTR 13504 0.0017 (5/2964) 0 * Os_TE_475781 Os_TE_475754 Chr3 27679110 27679111 + MPING 430 0.0003 (1/2991) 0 * Os_TE_475753 Os_TE_475753 Chr3 27679108 27679107 - MPING 430 0.0003 (1/2989) 0 * Os_TE_475754 Os_TE_475738 Chr3 27669515 27669516 + ORSgTEMT01400031 216 0.0020 (6/2968) 0 * * Os_TE_475735 Chr3 27668923 27668924 - STOWAWAY51_OS 246 0.0003 (1/2908) 0 * * Os_TE_475702 Chr3 27664119 27664120 - ORSgTETN00200001 10994 0.0037 (11/2936) 0 * Os_TE_475701 Os_TE_475701 Chr3 27664117 27664116 + SPMLIKE 10989 0.0047 (14/2953) 0 * Os_TE_475702 Os_TE_475699 Chr3 27663452 27663453 - MuDR2_OS 6770 0.0255 (69/2701) 0 * Os_TE_475698 Os_TE_475698 Chr3 27663443 27663442 + MuDR2_OS 6770 0.0306 (83/2712) 0 * Os_TE_475699 Os_TE_475690 Chr3 27660494 27660495 + ORSgTETNOOT00908 242 0.0003 (1/2976) 0 * * Os_TE_475657 Chr3 27644300 27644301 + COPI2_LTR 4733 0.0003 (1/2986) 0 * * Os_TE_475653 Chr3 27643399 27643398 + COPI2_LTR 4733 0.0003 (1/2993) 0 * * Os_TE_475647 Chr3 27640907 27640906 + TRUNCATOR 2918 0.0043 (13/2992) 0 * Os_TE_475646 Os_TE_475646 Chr3 27640906 27640907 - TRUNCATOR 2918 0.0043 (13/2990) 0 * Os_TE_475647 Os_TE_475636 Chr3 27632559 27632560 + COPIA2-LTR_OS 6433 0.0007 (2/2942) 0 * Os_TE_475635 Os_TE_475635 Chr3 27632555 27632554 - COPIA2-LTR_OS 6433 0.0010 (3/2937) 0 * Os_TE_475636 Os_TE_475608 Chr3 27627074 27627073 + ENSPM5_OS 9581 0.0034 (10/2937) 0 * * Os_TE_475548 Chr3 27615661 27615662 + TWIF 586 0.0003 (1/2985) 0 * Os_TE_475547 Os_TE_475547 Chr3 27615654 27615653 - ORSiTETNOOT00134 607 0.0003 (1/2987) 0 * Os_TE_475548 Os_TE_475544 Chr3 27614290 27614291 + COPIA2-LTR_OS 6433 0.0014 (4/2848) 0 * Os_TE_475543 Os_TE_475543 Chr3 27614286 27614285 - COPIA2-LTR_OS 6433 0.0014 (4/2850) 0 * Os_TE_475544 Os_TE_475535 Chr3 27607650 27607651 + ORSiTERTOOT00074 4935 0.0004 (1/2693) 0 * Os_TE_475534 Os_TE_475534 Chr3 27607646 27607645 - ORSiTERTOOT00074 4935 0.0004 (1/2649) 0 * Os_TE_475535 Os_TE_475533 Chr3 27607534 27596533 - ORSgTETN00200001 10994 0.8166 (2338/2863) 1 Intact * Os_TE_475521 Chr3 27595094 27595095 + COPIA2-LTR_OS 6433 0.0003 (1/2971) 0 * Os_TE_475520 Os_TE_475520 Chr3 27595090 27595089 - COPIA2-LTR_OS 6433 0.0003 (1/2978) 0 * Os_TE_475521 Os_TE_475516 Chr3 27594098 27594097 + ORSgTETNOOT00908 242 0.0003 (1/2951) 0 * * Os_TE_475504 Chr3 27592778 27592777 - ORSiTETNOOT00134 607 0.0003 (1/2977) 0 * * Os_TE_475503 Chr3 27588953 27588954 - ORSgTEMT04800063 360 0.0020 (6/2994) 0 * * Os_TE_475500 Chr3 27583821 27583822 - OSTE24 683 0.0003 (1/2994) 0 * Os_TE_475499 Os_TE_475499 Chr3 27583810 27583809 - OSTE24 683 0.0003 (1/2991) 0 * Os_TE_475500 Os_TE_475498 Chr3 27583738 27583739 - SZ-62LTR 3649 0.0488 (146/2990) 0 * Os_TE_475497 Os_TE_475497 Chr3 27583734 27583733 + SZ-62LTR 3649 0.0491 (147/2992) 0 * Os_TE_475498 Os_TE_475492 Chr3 27582527 27582528 - COPI2_LTR 4733 0.0003 (1/2987) 0 * Os_TE_475491 Os_TE_475491 Chr3 27582523 27582522 + COPI2_LTR 4733 0.0003 (1/2985) 0 * Os_TE_475492 Os_TE_475483 Chr3 27580447 27580446 + RIRE2_LTR 11306 0.0013 (4/2994) 0 * * Os_TE_475472 Chr3 27577080 27576149 + COPIA2-LTR_OS 6433 0.7401 (2196/2967) 1 Solo_LTR Os_TE_475471 Os_TE_475471 Chr3 27576149 27577080 - COPIA2-LTR_OS 6433 0.7454 (2204/2957) 1 Solo_LTR Os_TE_475472 Os_TE_475467 Chr3 27575001 27575002 - SZ-48LTR 3632 0.0047 (14/2988) 0 * * Os_TE_475456 Chr3 27571961 27571960 + SPMLIKE 10989 0.0010 (3/2985) 0 * * Os_TE_475435 Chr3 27569419 27569418 - OSTE21 1271 0.1068 (317/2968) 0 * Os_TE_475434 Os_TE_475434 Chr3 27569411 27569412 + OSTE21 1271 0.1057 (312/2951) 0 * Os_TE_475435 Os_TE_475411 Chr3 27565259 27565260 + MDR2 6967 0.1068 (319/2986) 0 * Os_TE_475410 Os_TE_475410 Chr3 27565251 27565250 - MDR2 6967 0.1055 (315/2985) 0 * Os_TE_475411 Os_TE_475396 Chr3 27562339 27562338 + RIREX_LTR 8828 0.0004 (1/2853) -1 * * Os_TE_475390 Chr3 27559990 27559989 - ORSgTEMT01601768 238 0.0164 (49/2989) 0 * Os_TE_475389 Os_TE_475389 Chr3 27559987 27559988 - ORSgTEMT01601432 239 0.0174 (52/2989) 0 * Os_TE_475390 Os_TE_475387 Chr3 27557612 27557613 + MDM2 312 0.0142 (42/2967) 0 * Os_TE_475386 Os_TE_475386 Chr3 27557604 27557603 + MDM2 312 0.0155 (46/2971) 0 * Os_TE_475387 Os_TE_475384 Chr3 27556460 27556461 + COPIA2-LTR_OS 6433 0.0013 (4/2985) 0 * Os_TE_475383 Os_TE_475383 Chr3 27556456 27556455 - COPIA2-LTR_OS 6433 0.0017 (5/2983) 0 * Os_TE_475384 Os_TE_475376 Chr3 27547900 27547901 + ORSiTERTOOT00296 5553 0.0003 (1/2984) 0 * Os_TE_475375 Os_TE_475375 Chr3 27547896 27547895 - SC-3_LTR 5748 0.0003 (1/2985) 0 * Os_TE_475376 Os_TE_475363 Chr3 27543813 27543814 + ORSiTERTOOT00226 792 0.1106 (331/2994) 0 * Os_TE_475362 Os_TE_475362 Chr3 27543809 27543808 - SZ-22_LTR 4403 0.1109 (332/2995) 0 * Os_TE_475363 Os_TE_475271 Chr3 27521312 27521313 + ORSiTERTOOT00441 4741 0.1925 (573/2976) 0 * Os_TE_475270 Os_TE_475270 Chr3 27521308 27521307 - ORSiTERTOOT00441 4741 0.1867 (555/2973) 0 * Os_TE_475271 Os_TE_475268 Chr3 27521021 27521022 + COPIA2-LTR_OS 6433 0.0003 (1/2986) 0 * Os_TE_475267 Os_TE_475267 Chr3 27521017 27521016 - COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * Os_TE_475268 Os_TE_475266 Chr3 27520773 27520774 - RIREX_LTR 8828 0.0003 (1/2994) 0 * * Os_TE_475261 Chr3 27517388 27517389 + MUDRN2_OS 756 0.0003 (1/2993) 0 * * Os_TE_475249 Chr3 27511829 27511830 - SC-8_LTR 4951 0.0013 (4/2997) 0 * Os_TE_475248 Os_TE_475248 Chr3 27511825 27511824 + SC-8_LTR 4951 0.0013 (4/2996) 0 * Os_TE_475249 Os_TE_475245 Chr3 27511040 27511039 + ORSgTEMT06100010 269 0.0007 (2/2981) 0 * * Os_TE_475215 Chr3 27499526 27499527 + ORSiTEMT01000008 242 0.0024 (7/2964) 0 * * Os_TE_475212 Chr3 27496620 27496621 + ORSiTERTOOT00296 5553 0.0045 (13/2917) 0 * Os_TE_475211 Os_TE_475211 Chr3 27496616 27496615 - SC-3_LTR 5748 0.0044 (13/2931) 0 * Os_TE_475212 Os_TE_475198 Chr3 27491164 27491163 + OSTE18 129 0.0003 (1/2925) 0 * * Os_TE_475197 Chr3 27489738 27489739 - SC-3_LTR 5748 0.0003 (1/2977) 0 * * Os_TE_475193 Chr3 27487120 27487119 - ORSgTEMT06100010 269 0.0003 (1/2965) 0 * * Os_TE_475191 Chr3 27487092 27487093 - TYPEM 227 0.0010 (3/2953) 0 * * Os_TE_475190 Chr3 27487041 27487040 + NDNA1TNA_OS 334 0.0186 (55/2953) 0 * * Os_TE_475185 Chr3 27484784 27484783 - TEMPINDAS 4259 0.0007 (2/2931) 0 * * Os_TE_475184 Chr3 27484769 27484768 + ORSgTETN00200005 1121 0.0003 (1/2935) 0 * * Os_TE_475183 Chr3 27484727 27484728 + HARB-1_OS 5166 0.0271 (80/2955) 0 * Os_TE_475182 Os_TE_475182 Chr3 27484725 27484724 - HARB-1_OS 5166 0.0278 (82/2953) 0 * Os_TE_475183 Os_TE_475180 Chr3 27483067 27483068 + SZ-4_LTR 5991 0.0006 (1/1640) 0 * Os_TE_475179 Os_TE_475179 Chr3 27483063 27483062 - SZ-4_LTR 5991 0.0006 (1/1789) 0 * Os_TE_475180 Os_TE_475178 Chr3 27482933 27482934 - GYPSIA_LTR 20595 0.0007 (1/1424) -1 * * Os_TE_475177 Chr3 27482359 27482360 + AMYLTP 383 0.0007 (2/2889) 0 * Os_TE_475176 Os_TE_475176 Chr3 27482351 27482350 - AMYLTP 383 0.0007 (2/2897) 0 * Os_TE_475177 Os_TE_475171 Chr3 27481182 27481183 - RETRO1_LTR 8314 0.0003 (1/2966) 0 * * Os_TE_475149 Chr3 27475582 27475583 + COPIA2-LTR_OS 6433 0.0555 (166/2993) 0 * * Os_TE_475147 Chr3 27475501 27475502 - OSTE14 885 0.0013 (4/2967) 0 * * Os_TE_475145 Chr3 27474418 27474417 - RIRE3_LTR 12054 0.0018 (5/2820) 0 * * Os_TE_475142 Chr3 27473105 27473106 - RIRE5-LTR_OS 6427 0.0018 (5/2790) 0 * * Os_TE_475140 Chr3 27472826 27472825 + DS-RICE2N 613 0.0020 (6/2981) 0 * * Os_TE_475112 Chr3 27460887 27460888 + ORSiTERTOOT00296 5553 0.0003 (1/2986) 0 * Os_TE_475111 Os_TE_475111 Chr3 27460883 27460882 - SC-3_LTR 5748 0.0003 (1/2989) 0 * Os_TE_475112 Os_TE_475067 Chr3 27451284 27451285 - MIDWAY 985 0.0003 (1/2943) 0 * * Os_TE_475050 Chr3 27446542 27446541 + RETRO2A_LTR 12895 0.0010 (3/2989) 0 * * Os_TE_475048 Chr3 27444233 27444232 - ORSgTEMT00300141 415 0.0007 (2/2991) 0 * * Os_TE_475030 Chr3 27439343 27439342 - OSMU5 4881 0.1078 (321/2977) 0 * Os_TE_475029 Os_TE_475029 Chr3 27439341 27439342 + OSMU5 4881 0.1055 (312/2957) 0 * Os_TE_475030 Os_TE_475028 Chr3 27439268 27439269 - INDITTO 263 0.0003 (1/2974) 0 * * Os_TE_474999 Chr3 27437015 27437014 - RETRO2_LTR 12874 0.0004 (1/2744) 0 * * Os_TE_474981 Chr3 27430521 27430522 - MPING 430 0.0003 (1/2927) 0 * * Os_TE_474960 Chr3 27426390 27426391 - COPI2_LTR 4733 0.0145 (39/2687) 0 * Os_TE_474959 Os_TE_474959 Chr3 27426386 27426385 + COPI2_LTR 4733 0.0103 (28/2728) 0 * Os_TE_474960 Os_TE_474958 Chr3 27426346 27426345 + ORSgTEMT01602181 239 0.0416 (90/2164) -1 * * Os_TE_474938 Chr3 27422771 27422772 - ORSgTEMT00100848 160 0.0003 (1/2996) 0 * * Os_TE_474937 Chr3 27422640 27422641 + OSTONOR1_LTR 6440 0.0017 (5/2991) 0 * Os_TE_474936 Os_TE_474936 Chr3 27422636 27422635 - ORSiTERT00100062 5674 0.0017 (5/2991) 0 * Os_TE_474937 Os_TE_474927 Chr3 27418804 27418805 - MPING 430 0.4156 (1243/2991) 0 * Os_TE_474926 Os_TE_474926 Chr3 27418802 27418801 + MPING 430 0.4180 (1252/2995) 0 * Os_TE_474927 Os_TE_474921 Chr3 27416659 27416658 - STOWAWAY51_OS 246 0.0003 (1/2994) 0 * Os_TE_474920 Os_TE_474920 Chr3 27416653 27416654 + STOWAWAY51_OS 246 0.0003 (1/2994) 0 * Os_TE_474921 Os_TE_474919 Chr3 27415843 27415844 - INDITTO 263 0.0010 (3/2992) 0 * Os_TE_474918 Os_TE_474918 Chr3 27415841 27415840 + INDITTO 263 0.0010 (3/2994) 0 * Os_TE_474919 Os_TE_474901 Chr3 27408210 27408211 + DS-RICE4N 715 0.0030 (8/2661) 0 * * Os_TE_474899 Chr3 27408162 27408163 + TWIFBIG 3567 0.0004 (1/2360) 0 * * Os_TE_474843 Chr3 27390135 27390136 - ORSiTETNOOT00134 607 0.0003 (1/2950) 0 * Os_TE_474842 Os_TE_474842 Chr3 27390128 27390127 + TWIF 586 0.0003 (1/2957) 0 * Os_TE_474843 Os_TE_474832 Chr3 27388216 27388217 + ORSgTETNOOT00908 242 0.6981 (2086/2988) 0 * * Os_TE_474821 Chr3 27374258 27374259 - ORSiTETNOOT00134 607 0.0003 (1/2998) 0 * Os_TE_474820 Os_TE_474820 Chr3 27374251 27374250 + TWIF 586 0.0003 (1/2998) 0 * Os_TE_474821 Os_TE_474808 Chr3 27367800 27367801 + OSMU5 4881 0.0014 (4/2954) 0 * * Os_TE_474807 Chr3 27366401 27366402 - SC-3_LTR 5748 0.0007 (2/2996) 0 * Os_TE_474806 Os_TE_474806 Chr3 27366397 27366396 + ORSiTERTOOT00296 5553 0.0007 (2/2996) 0 * Os_TE_474807 Os_TE_474801 Chr3 27360060 27360061 + ORSiTERTOOT00296 5553 0.0080 (24/2993) 0 * Os_TE_474800 Os_TE_474800 Chr3 27360056 27360055 - SC-3_LTR 5748 0.0080 (24/2989) 0 * Os_TE_474801 Os_TE_474783 Chr3 27350117 27350118 + ORSgTEMT00600120 364 0.0053 (16/2994) 0 * * Os_TE_474782 Chr3 27349293 27349292 + SC-8_LTR 4951 0.0003 (1/2976) 0 * * Os_TE_474719 Chr3 27328553 27328552 - DS-RICE2N 613 0.6725 (1805/2684) 0 * * Os_TE_474716 Chr3 27327192 27327193 + MPING 430 0.0003 (1/2970) 0 * Os_TE_474715 Os_TE_474715 Chr3 27327190 27327189 - MPING 430 0.0003 (1/2972) 0 * Os_TE_474716 Os_TE_474708 Chr3 27325709 27325710 + ORSgTERT00200981 4035 0.0020 (6/2991) 0 * * Os_TE_474692 Chr3 27320370 27320371 + INDITTO 263 0.0007 (2/2992) 0 * Os_TE_474691 Os_TE_474691 Chr3 27320368 27320367 - INDITTO 263 0.0003 (1/2990) 0 * Os_TE_474692 Os_TE_474689 Chr3 27319997 27319996 - STOWAWAY51_OS 246 0.0027 (8/2978) 0 * Os_TE_474688 Os_TE_474688 Chr3 27319991 27319992 + STOWAWAY51_OS 246 0.0027 (8/2971) 0 * Os_TE_474689 Os_TE_474683 Chr3 27317506 27317507 - SC-3_LTR 5748 0.0003 (1/2986) 0 * Os_TE_474682 Os_TE_474682 Chr3 27317502 27317501 + ORSiTERTOOT00296 5553 0.0003 (1/2988) 0 * Os_TE_474683 Os_TE_474680 Chr3 27317312 27317311 + ORSiTERTOOT00296 5553 0.0003 (1/2990) 0 * * Os_TE_474679 Chr3 27312876 27312877 + RIREX_LTR 8828 0.0010 (3/2992) 0 * Os_TE_474678 Os_TE_474678 Chr3 27312872 27312871 - RIREX_LTR 8828 0.0010 (3/2989) 0 * Os_TE_474679 Os_TE_474654 Chr3 27295500 27295501 + RETRO2_LTR 12874 0.0137 (41/2986) 0 * * Os_TE_474640 Chr3 27287596 27287595 - STOWAWAY51_OS 246 0.0003 (1/2957) 0 * * Os_TE_474615 Chr3 27268996 27268995 - ORSgTERT00200181 6815 0.0003 (1/2884) 0 * * Os_TE_474614 Chr3 27268737 27268738 + SZ-62LTR 3649 0.0990 (295/2979) 0 * Os_TE_474613 Os_TE_474613 Chr3 27268733 27268732 - SZ-62LTR 3649 0.0986 (294/2981) 0 * Os_TE_474614 Os_TE_474591 Chr3 27255995 27255994 + STOWAWAY51_OS 246 0.0010 (3/2996) 0 * Os_TE_474590 Os_TE_474590 Chr3 27255989 27255990 + ORSgTEMT01601591 242 0.0010 (3/2996) 0 * Os_TE_474591 Os_TE_474580 Chr3 27252317 27252318 - CASIN 282 0.0003 (1/2936) 0 * * Os_TE_474541 Chr3 27238333 27238334 + MuDR3_OS 8604 0.5398 (1553/2877) 0 * Os_TE_474540 Os_TE_474540 Chr3 27238325 27238324 - MuDR3_OS 8604 0.5088 (1412/2775) 0 * Os_TE_474541 Os_TE_474510 Chr3 27225765 27225764 + ORSgTEMT00300064 397 0.0036 (5/1400) 0 * * Os_TE_474508 Chr3 27225404 27225403 + INDITTO 263 0.0036 (5/1407) 0 * * Os_TE_474507 Chr3 27225140 27225141 + COPIA2-LTR_OS 6433 0.0036 (5/1392) 0 * Os_TE_474506 Os_TE_474506 Chr3 27225136 27225135 - COPIA2-LTR_OS 6433 0.0036 (5/1384) 0 * Os_TE_474507 Os_TE_474496 Chr3 27222443 27215898 - MuDR4_OS 7610 0.4571 (1354/2962) 1 Intact * Os_TE_474490 Chr3 27215274 27215275 - RETRO1_LTR 8314 0.0010 (3/2986) 0 * Os_TE_474489 Os_TE_474489 Chr3 27215270 27215269 + RETRO1_LTR 8314 0.0010 (3/2993) 0 * Os_TE_474490 Os_TE_474487 Chr3 27214690 27214689 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * * Os_TE_474484 Chr3 27213274 27213275 + RETROSAT2LTR 12796 0.0007 (2/2995) 0 * Os_TE_474483 Os_TE_474483 Chr3 27213272 27213271 - RETROSAT2LTR 12796 0.0007 (2/2996) 0 * Os_TE_474484 Os_TE_474478 Chr3 27211954 27211953 - RIREX_LTR 8828 0.0003 (1/2991) 0 * * Os_TE_474464 Chr3 27209483 27209484 - COPIA2-LTR_OS 6433 0.0007 (1/1406) 0 * * Os_TE_474459 Chr3 27207629 27207630 - RIREX_LTR 8828 0.0003 (1/2992) 0 * * Os_TE_474457 Chr3 27207516 27207517 + TYPEH 309 0.0013 (4/2975) 0 * Os_TE_474456 Os_TE_474456 Chr3 27207513 27207512 - TYPEH 309 0.0007 (2/2967) 0 * Os_TE_474457 Os_TE_474444 Chr3 27203582 27203583 + CLOUD-6 508 0.0004 (1/2722) 0 * * Os_TE_474431 Chr3 27202496 27202497 - TNR12 528 0.0007 (2/2728) 0 * * Os_TE_474420 Chr3 27199270 27199271 + COPI2_LTR 4733 0.0003 (1/2989) 0 * * Os_TE_474419 Chr3 27198903 27198904 - COPI2_LTR 4733 0.0003 (1/2992) 0 * Os_TE_474418 Os_TE_474418 Chr3 27198899 27198898 + COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_474419 Os_TE_474410 Chr3 27197333 27197334 - MERMITEJ 1498 0.0003 (1/2965) 0 * Os_TE_474409 Os_TE_474409 Chr3 27197328 27197327 + MERMITED 1572 0.0003 (1/2977) 0 * Os_TE_474410 Os_TE_474408 Chr3 27197198 27197199 + MuDR2_OS 6770 0.0014 (4/2900) 0 * Os_TE_474407 Os_TE_474407 Chr3 27197189 27197188 - MuDR2_OS 6770 0.0007 (2/2902) 0 * Os_TE_474408 Os_TE_474406 Chr3 27196918 27196919 + RIRE2_LTR 11306 0.0010 (3/2970) 0 * Os_TE_474405 Os_TE_474405 Chr3 27196914 27196913 - RIRE2_LTR 11306 0.0010 (3/2895) 0 * Os_TE_474406 Os_TE_474334 Chr3 27173254 27173255 + MPING 430 0.0003 (1/2991) 0 * Os_TE_474333 Os_TE_474333 Chr3 27173252 27173251 - MPING 430 0.0003 (1/2991) 0 * Os_TE_474334 Os_TE_474332 Chr3 27172811 27172810 + OSTE15 1168 0.0003 (1/2990) 0 * * Os_TE_474330 Chr3 27172167 27172168 - RIREX_LTR 8828 0.4059 (1212/2986) 0 * * Os_TE_474327 Chr3 27170672 27170671 - ORSgTEMT01602493 235 0.0007 (2/2764) 0 * * Os_TE_474318 Chr3 27166733 27166734 + ORSgTEMT00600124 361 0.4109 (1224/2979) 0 * Os_TE_474317 Os_TE_474317 Chr3 27166731 27166730 + CASTAWAY 364 0.4138 (1233/2980) 0 * Os_TE_474318 Os_TE_474311 Chr3 27165746 27165745 + STOWAWAY50_OS 174 0.0003 (1/2990) 0 * * Os_TE_474302 Chr3 27161919 27161920 - ORSgTEMT00900965 216 0.0013 (4/2968) 0 * * Os_TE_474295 Chr3 27153155 27153156 - SC-8_LTR 4951 0.0003 (1/2986) 0 * Os_TE_474294 Os_TE_474294 Chr3 27153151 27153150 + ORSiTERTOOT00381 4988 0.0003 (1/2988) 0 * Os_TE_474295 Os_TE_474293 Chr3 27152940 27152941 - INDITTO 263 0.0007 (2/2993) 0 * Os_TE_474292 Os_TE_474292 Chr3 27152938 27152937 + INDITTO 263 0.0010 (3/2988) 0 * Os_TE_474293 Os_TE_474261 Chr3 27143906 27143907 + ORSiTERTOOT00033 4884 0.0003 (1/2992) 0 * Os_TE_474260 Os_TE_474260 Chr3 27143903 27143902 - RETROFIT_LTR 4866 0.0003 (1/2993) 0 * Os_TE_474261 Os_TE_474207 Chr3 27117543 27117544 + RIREX_LTR 8828 0.0007 (2/2942) 0 * Os_TE_474206 Os_TE_474206 Chr3 27117539 27117538 - RIREX_LTR 8828 0.0007 (2/2976) 0 * Os_TE_474207 Os_TE_474176 Chr3 27101997 27101998 - F569 228 0.0017 (5/2978) 0 * Os_TE_474175 Os_TE_474175 Chr3 27101995 27101994 + F569 228 0.0017 (5/2982) 0 * Os_TE_474176 Os_TE_474153 Chr3 27089843 27089844 - SC-8_LTR 4951 0.0003 (1/2993) 0 * Os_TE_474152 Os_TE_474152 Chr3 27089839 27089838 + ORSiTERTOOT00381 4988 0.0003 (1/2992) 0 * Os_TE_474153 Os_TE_474151 Chr3 27088380 27088381 + TRUNCATOR2_LTR 2904 0.0003 (1/2986) 0 * Os_TE_474150 Os_TE_474150 Chr3 27088376 27088375 - TRUNCATOR2_LTR 2904 0.0003 (1/2986) 0 * Os_TE_474151 Os_TE_474134 Chr3 27082041 27082042 - ORSiTERTOOT00367 5639 0.0003 (1/2991) 0 * * Os_TE_474075 Chr3 27064444 27064304 - UNIQUE 158 0.3263 (971/2976) 1 Intact Os_TE_474074 Os_TE_474074 Chr3 27064301 27064433 + ORSiTEMT03300001 145 0.3568 (983/2755) 1 Intact Os_TE_474075 Os_TE_474073 Chr3 27064255 27064256 + F770 284 0.6666 (1969/2954) 0 * * Os_TE_474059 Chr3 27056601 27056600 + ORSiTERTOOT00226 792 0.0003 (1/2878) 0 * * Os_TE_474020 Chr3 27041304 27041305 + SC-8_LTR 4951 0.0004 (1/2689) 0 * * Os_TE_473994 Chr3 27027340 27027339 - COPIA2-LTR_OS 6433 0.0003 (1/2939) 0 * * Os_TE_473987 Chr3 27020735 27020734 - ORSgTEMT00600085 364 0.1676 (274/1635) 0 * * Os_TE_473977 Chr3 27010255 27010254 - TYPEM 227 0.0194 (40/2058) 0 * * Os_TE_473975 Chr3 27009796 27009797 + NDNA1TNA_OS 334 0.0075 (3/401) 0 * Os_TE_473974 Os_TE_473974 Chr3 27009794 27009793 - NDNA1TNA_OS 334 0.0012 (2/1739) 0 * Os_TE_473975 Os_TE_473972 Chr3 27008725 27008726 + STOWAWAY1_OS 149 0.8715 (2536/2910) 0 * * Os_TE_473971 Chr3 27008606 27008607 + ORSgTEMT02000025 197 0.8184 (1735/2120) 0 * * Os_TE_473958 Chr3 27006290 27006149 - ORSgTEMT00501730 148 0.1459 (396/2714) 1 Intact Os_TE_473956 Os_TE_473956 Chr3 27006140 27006289 + ORSgTEMT00500512 153 0.1327 (394/2969) 1 Intact Os_TE_473958 Os_TE_473949 Chr3 27004657 27004656 - SC-3_LTR 5748 0.0013 (4/2970) 0 * * Os_TE_473946 Chr3 27003303 27003302 + ORSgTEMT01601122 212 0.0013 (4/2994) 0 * * Os_TE_473936 Chr3 26999999 27000000 + OSTE33 1012 0.1020 (40/392) 0 * Os_TE_473935 Os_TE_473935 Chr3 26999990 26999989 + OSTE33 1012 0.1066 (42/394) 0 * Os_TE_473936 Os_TE_473933 Chr3 26999588 26999892 - ORSgTEMT00100921 319 0.1371 (391/2851) 1 Intact * Os_TE_473928 Chr3 26990555 26990556 - SC-8_LTR 4951 0.0007 (2/2993) 0 * Os_TE_473927 Os_TE_473927 Chr3 26990551 26990550 + ORSiTERTOOT00381 4988 0.0007 (2/2996) 0 * Os_TE_473928 Os_TE_473925 Chr3 26989980 26989981 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_473924 Os_TE_473924 Chr3 26989976 26989975 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_473925 Os_TE_473725 Chr3 26889100 26889101 + RETRO2_LTR 12874 0.1775 (532/2998) 0 * * Os_TE_473706 Chr3 26880328 26880327 + ORSgTEMT00700017 386 0.0007 (2/2945) 0 * Os_TE_473705 Os_TE_473705 Chr3 26880321 26880322 - ORSgTEMT00700002 381 0.0007 (2/2941) 0 * Os_TE_473706 Os_TE_473700 Chr3 26877902 26877901 - INDITTO 263 0.0010 (3/2967) 0 * * Os_TE_473675 Chr3 26872958 26872957 + STOWAWAY51_OS 246 0.0014 (4/2876) 0 * * Os_TE_473623 Chr3 26859769 26859768 - TRUNCATOR 2918 0.4571 (1327/2903) 0 * * Os_TE_473610 Chr3 26854200 26854201 + ORSiTERTOOT00226 792 0.0003 (1/2986) 0 * Os_TE_473609 Os_TE_473609 Chr3 26854196 26854195 + ORSiTERTOOT00226 792 0.0003 (1/2985) 0 * Os_TE_473610 Os_TE_473606 Chr3 26853876 26853877 - RETRO2_LTR 12874 0.0253 (75/2963) 0 * * Os_TE_473571 Chr3 26845864 26845865 + ORSiTERTOOT00441 4741 0.0003 (1/2996) 0 * Os_TE_473570 Os_TE_473570 Chr3 26845860 26845859 - ORSiTERTOOT00441 4741 0.0003 (1/2999) 0 * Os_TE_473571 Os_TE_473567 Chr3 26843545 26843546 + ORSgTETNOOT00908 242 0.0124 (37/2994) 0 * Os_TE_473566 Os_TE_473566 Chr3 26843538 26843537 + ORSgTETNOOT01219 231 0.0124 (37/2993) 0 * Os_TE_473567 Os_TE_473557 Chr3 26837561 26837562 + KIDDOC 275 0.0003 (1/2995) 0 * Os_TE_473556 Os_TE_473556 Chr3 26837557 26837556 - KIDDOC 275 0.0003 (1/2994) 0 * Os_TE_473557 Os_TE_473551 Chr3 26835757 26835758 + NDNA1TNA_OS 334 0.0007 (2/2941) 0 * Os_TE_473550 Os_TE_473550 Chr3 26835755 26835754 - NDNA1TNA_OS 334 0.0003 (1/2947) 0 * Os_TE_473551 Os_TE_473546 Chr3 26833406 26833405 - SZ-35LTR 3853 0.0264 (79/2987) 0 * * Os_TE_473532 Chr3 26826698 26826697 - ORSgTEMT01701302 154 0.0017 (5/2972) 0 * * Os_TE_473526 Chr3 26822047 26822048 - ORSgTEMT00501447 126 0.0017 (5/2985) 0 * * Os_TE_473522 Chr3 26820189 26820190 - HARB-1_OS 5166 0.0003 (1/2988) 0 * Os_TE_473521 Os_TE_473521 Chr3 26820187 26820186 + HARB-1_OS 5166 0.0003 (1/2993) 0 * Os_TE_473522 Os_TE_473513 Chr3 26819456 26819457 - CASTAWAY 364 0.0003 (1/2989) 0 * Os_TE_473512 Os_TE_473512 Chr3 26819454 26819453 + ORSgTEMT00600120 364 0.0003 (1/2977) 0 * Os_TE_473513 Os_TE_473509 Chr3 26818912 26818911 - ORSiTERT00100063 7723 0.0017 (5/2965) 0 * * Os_TE_473495 Chr3 26816612 26816613 + AMYLTP 383 0.0013 (4/2967) 0 * Os_TE_473494 Os_TE_473494 Chr3 26816604 26816603 - AMYLTP 383 0.0013 (4/2966) 0 * Os_TE_473495 Os_TE_473422 Chr3 26789539 26789538 - ORSgTETN00200001 10994 0.0120 (36/2994) 0 * * Os_TE_473410 Chr3 26785485 26785484 + ORSgTEMT01601591 242 0.0075 (22/2939) 0 * * Os_TE_473403 Chr3 26782560 26782561 + SPMLIKE 10989 0.0003 (1/2913) 0 * * Os_TE_473394 Chr3 26781228 26780994 + ORSgTEMT01602606 192 0.6870 (1929/2808) 1 Intact * Os_TE_473390 Chr3 26780535 26780534 + SETARIA2 1142 0.3031 (908/2996) 0 * * Os_TE_473378 Chr3 26777685 26777684 - RIREX_LTR 8828 0.0013 (4/2988) 0 * * Os_TE_473324 Chr3 26754511 26754512 + RETRO2A_LTR 12895 0.0017 (5/2996) 0 * Os_TE_473323 Os_TE_473323 Chr3 26754507 26754506 - RETRO1_LTR 8314 0.0017 (5/2997) 0 * Os_TE_473324 Os_TE_473314 Chr3 26751514 26751515 + ORSgTEMT01701591 154 0.0004 (1/2381) 0 * * Os_TE_473305 Chr3 26748153 26748152 - ORSgTEMT02400246 177 0.0007 (2/2991) 0 * * Os_TE_473304 Chr3 26748152 26748153 + HARB-1_OS 5166 0.0003 (1/2992) 0 * * Os_TE_473290 Chr3 26743136 26743137 - TRUNCATOR2_LTR 2904 0.2119 (625/2949) 0 * Os_TE_473289 Os_TE_473289 Chr3 26743132 26743131 + TRUNCATOR2_LTR 2904 0.1994 (579/2903) 0 * Os_TE_473290 Os_TE_473246 Chr3 26723787 26723788 + SPMLIKE 10989 0.0003 (1/2952) 0 * * Os_TE_473221 Chr3 26716914 26716915 - OSTE20 496 0.0007 (2/2801) -1 * Os_TE_473220 Os_TE_473220 Chr3 26716910 26716909 + OSTE20 496 0.0018 (5/2825) -1 * Os_TE_473221 Os_TE_473203 Chr3 26713814 26713815 + ENSPM6_OS 9815 0.0961 (287/2986) 0 * * Os_TE_473172 Chr3 26708076 26708077 - COPIA2-LTR_OS 6433 0.0003 (1/2976) 0 * Os_TE_473171 Os_TE_473171 Chr3 26708072 26708071 + COPIA2-LTR_OS 6433 0.0003 (1/2974) 0 * Os_TE_473172 Os_TE_473170 Chr3 26706267 26706268 - CLOUD-4 520 0.2991 (887/2966) 0 * Os_TE_473169 Os_TE_473169 Chr3 26706265 26706264 + CLOUD-4 520 0.3027 (898/2967) 0 * Os_TE_473170 Os_TE_473168 Chr3 26705852 26705853 + ORSgTEMT00600272 361 0.3104 (925/2980) 0 * Os_TE_473167 Os_TE_473167 Chr3 26705851 26705850 - ORSgTEMT00600524 364 0.3129 (936/2991) 0 * Os_TE_473168 Os_TE_473159 Chr3 26703450 26703257 - ORSgTEMT02000011 196 0.7153 (2115/2957) 1 Intact * Os_TE_473155 Chr3 26702482 26701298 + CACTA-D 1038 0.7114 (2103/2956) 1 Intact * Os_TE_473147 Chr3 26700648 26700649 - OSTE33 1012 0.2863 (793/2770) 0 * Os_TE_473146 Os_TE_473146 Chr3 26700639 26700638 - OSTE33 1012 0.3254 (946/2907) 0 * Os_TE_473147 Os_TE_473134 Chr3 26696643 26696644 + MERMITEB 1610 0.2697 (774/2870) 0 * * Os_TE_473125 Chr3 26692448 26692449 + HARB-1_OS 5166 0.0003 (1/2984) 0 * Os_TE_473124 Os_TE_473124 Chr3 26692446 26692445 - HARB-1_OS 5166 0.0003 (1/2969) 0 * Os_TE_473125 Os_TE_473095 Chr3 26679025 26678880 - ORSgTEMT00502359 149 0.7210 (2091/2900) 1 Intact * Os_TE_473088 Chr3 26678209 26678208 + ORSgTEMT00600272 361 0.0003 (1/2990) 0 * * Os_TE_473086 Chr3 26677516 26677517 - ORSgTEMT00600085 364 0.2960 (807/2726) 0 * * Os_TE_473073 Chr3 26668507 26675878 - OSTE33 1012 0.7034 (2070/2943) 1 Intact * Os_TE_473069 Chr3 26667315 26667316 - TYPEU1 380 0.3025 (893/2952) 0 * Os_TE_473068 Os_TE_473068 Chr3 26667305 26667304 + TYPEU4 402 0.3025 (894/2955) 0 * Os_TE_473069 Os_TE_473065 Chr3 26665645 26665644 + CLOUD 734 0.0007 (1/1534) 0 * * Os_TE_473058 Chr3 26664921 26664768 - ORSgTEMT01700029 143 0.7135 (2040/2859) 1 Intact Os_TE_473056 Os_TE_473056 Chr3 26664768 26664921 + ORSgTEMT01701663 106 0.7349 (2126/2893) 1 Intact Os_TE_473058 Os_TE_473054 Chr3 26664328 26664327 + EnSpm-13_OS 11171 0.0005 (1/2127) 0 * * Os_TE_473049 Chr3 26663013 26663012 + ORSgTEMT01602181 239 0.2760 (798/2891) 0 * * Os_TE_473038 Chr3 26660190 26660191 - SZ-22_LTR 4403 0.2177 (643/2953) 0 * Os_TE_473037 Os_TE_473037 Chr3 26660186 26660185 + SZ-22_LTR 4403 0.2164 (647/2990) 0 * Os_TE_473038 Os_TE_473031 Chr3 26658917 26658677 + ORSgTEMT01601122 212 0.6291 (1513/2405) 1 Intact * Os_TE_473005 Chr3 26639162 26639163 - RIREX_LTR 8828 0.3127 (919/2939) 0 * Os_TE_473004 Os_TE_473004 Chr3 26639158 26639157 + RIREX_LTR 8828 0.3056 (893/2922) 0 * Os_TE_473005 Os_TE_472980 Chr3 26625923 26625924 + OLO24 345 0.2690 (559/2078) 0 * Os_TE_472979 Os_TE_472979 Chr3 26625921 26625920 - ORSgTEMT00100762 342 0.5045 (1499/2971) 0 * Os_TE_472980 Os_TE_472946 Chr3 26613206 26613417 + ORSgTEMT01400032 215 0.4955 (1387/2799) 1 Intact * Os_TE_472935 Chr3 26609653 26609542 - ORSgTEMT01701882 154 0.5091 (1516/2978) 1 Intact * Os_TE_472895 Chr3 26600175 26600176 + ORSgTEMT01600491 234 0.0003 (1/2940) 0 * * Os_TE_472882 Chr3 26597232 26597231 + RIREX_LTR 8828 0.2631 (737/2801) 0 * * Os_TE_472881 Chr3 26597225 26597226 - RIRE2_LTR 11306 0.2517 (684/2718) 0 * Os_TE_472880 Os_TE_472880 Chr3 26597221 26597220 + RIRE2_LTR 11306 0.2654 (733/2762) 0 * Os_TE_472881 Os_TE_472864 Chr3 26594507 26594508 - CACTA-Q 2268 0.2456 (734/2989) 0 * * Os_TE_472859 Chr3 26592658 26592659 + MUDRN5_OS 374 0.0003 (1/2991) 0 * * Os_TE_472823 Chr3 26580371 26580372 - F770 284 0.1384 (405/2927) 0 * Os_TE_472822 Os_TE_472822 Chr3 26580369 26580368 + F770 284 0.1364 (399/2926) 0 * Os_TE_472823 Os_TE_472816 Chr3 26579780 26579781 - AMYLTP 383 0.0010 (3/2966) 0 * Os_TE_472815 Os_TE_472815 Chr3 26579772 26579771 + AMYLTP 383 0.0017 (5/2967) 0 * Os_TE_472816 Os_TE_472800 Chr3 26573567 26573568 + SPMLIKE 10989 0.0017 (5/2994) 0 * * Os_TE_472784 Chr3 26556869 26556868 + ORSgTEMT01700505 154 0.1724 (505/2929) 0 * * Os_TE_472767 Chr3 26552498 26552497 - SC-3_LTR 5748 0.1285 (383/2980) 0 * * Os_TE_472739 Chr3 26541431 26541430 - STOWAWAY44_OS 240 0.0020 (6/2970) 0 * * Os_TE_472686 Chr3 26523106 26523107 + TRUNCATOR2_LTR 2904 0.0003 (1/2926) 0 * Os_TE_472685 Os_TE_472685 Chr3 26523102 26523101 - TRUNCATOR2_LTR 2904 0.0003 (1/2929) 0 * Os_TE_472686 Os_TE_472675 Chr3 26516560 26520674 - TYPEM 227 0.6109 (1790/2930) 1 Intact * Os_TE_472666 Chr3 26514214 26514213 + STOWAWAY44_OS 240 0.0010 (3/2989) 0 * Os_TE_472665 Os_TE_472665 Chr3 26514211 26514212 - STOWAWAY44_OS 240 0.0010 (3/2990) 0 * Os_TE_472666 Os_TE_472663 Chr3 26512215 26512216 + ORSgTETNOOT00908 242 0.0013 (4/2977) 0 * * Os_TE_472660 Chr3 26511345 26511344 - EnSpm-10_OS 11265 0.3005 (899/2992) 0 * * Os_TE_472645 Chr3 26505937 26505938 + SZ-9LTR 965 0.0003 (1/2957) 0 * Os_TE_472644 Os_TE_472644 Chr3 26505933 26505932 - SZ-9LTR 965 0.0003 (1/2962) 0 * Os_TE_472645 Os_TE_472637 Chr3 26504625 26504624 + COPI2_LTR 4733 0.0003 (1/2948) 0 * * Os_TE_472626 Chr3 26501039 26501040 + COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * Os_TE_472625 Os_TE_472625 Chr3 26501035 26501034 - COPIA2-LTR_OS 6433 0.0003 (1/2981) 0 * Os_TE_472626 Os_TE_472619 Chr3 26497702 26497703 - ORSiTERT00200154 9386 0.0037 (11/2981) 0 * Os_TE_472618 Os_TE_472618 Chr3 26497698 26497697 + TRUNCATOR 2918 0.0030 (9/2980) 0 * Os_TE_472619 Os_TE_472603 Chr3 26485793 26485792 + ORSgTEMT01602119 229 0.0010 (3/2893) 0 * * Os_TE_472599 Chr3 26485488 26485487 - AMYLTP 383 0.1369 (374/2732) 0 * * Os_TE_472577 Chr3 26480497 26480496 - TRUNCATOR 2918 0.1328 (395/2975) 0 * Os_TE_472576 Os_TE_472576 Chr3 26480496 26480497 + TRUNCATOR 2918 0.1320 (392/2969) 0 * Os_TE_472577 Os_TE_472543 Chr3 26469705 26469706 - RIRE3_LTR 12054 0.0003 (1/2974) 0 * Os_TE_472542 Os_TE_472542 Chr3 26469701 26469700 + RIRE3_LTR 12054 0.0003 (1/2981) 0 * Os_TE_472543 Os_TE_472536 Chr3 26467661 26467662 + MPING 430 0.0003 (1/2996) 0 * Os_TE_472535 Os_TE_472535 Chr3 26467659 26467658 - MPING 430 0.0003 (1/2996) 0 * Os_TE_472536 Os_TE_472528 Chr3 26461290 26461291 + TWIFBIG 3567 0.0020 (6/2998) 0 * Os_TE_472527 Os_TE_472527 Chr3 26461283 26461282 - ORSiTETNOOT00216 3569 0.0023 (7/2999) 0 * Os_TE_472528 Os_TE_472487 Chr3 26451378 26451377 - F569 228 0.0003 (1/2918) 0 * * Os_TE_472471 Chr3 26440606 26440607 - ORSgTEMT02000040 196 0.2849 (850/2983) 0 * * Os_TE_472465 Chr3 26433383 26433384 - TNR2A 152 0.0011 (3/2826) 0 * * Os_TE_472464 Chr3 26433315 26433316 - MuDR3_OS 8604 0.0007 (2/2920) 0 * * Os_TE_472451 Chr3 26427701 26427702 - MPING 430 0.0012 (3/2599) 0 * * Os_TE_472434 Chr3 26422482 26422483 - RETROSAT2LTR 12796 0.0013 (4/2991) 0 * * Os_TE_472405 Chr3 26413201 26411782 + OSTE33 1012 0.6918 (1939/2803) 1 Intact Os_TE_472403 Os_TE_472403 Chr3 26411782 26413201 + OSTE33 1012 0.6959 (1982/2848) 1 Intact Os_TE_472405 Os_TE_472353 Chr3 26395994 26395995 + ORSgTETNOOT00032 218 0.2434 (723/2971) 0 * * Os_TE_472323 Chr3 26380372 26380371 - MDR2 6967 0.0039 (10/2545) 0 * * Os_TE_472270 Chr3 26353521 26353522 - ORSgTEMT00900498 242 0.0017 (5/2991) 0 * * Os_TE_472267 Chr3 26353120 26353119 - RETRO2_LTR 12874 0.0007 (2/2980) 0 * * Os_TE_472253 Chr3 26343516 26343517 - RETRO2_LTR 12874 0.0007 (2/2899) 0 * * Os_TE_472242 Chr3 26339182 26339183 - TAMI2 254 0.0013 (4/2991) 0 * Os_TE_472241 Os_TE_472241 Chr3 26339174 26339173 - TAMI2 254 0.0017 (5/2990) 0 * Os_TE_472242 Os_TE_472240 Chr3 26337779 26337780 - RIREX_LTR 8828 0.0007 (2/2991) 0 * Os_TE_472239 Os_TE_472239 Chr3 26337775 26337774 + RIREX_LTR 8828 0.0007 (2/2990) 0 * Os_TE_472240 Os_TE_472204 Chr3 26332610 26331444 - CACTA-M 1129 0.8375 (2474/2954) 1 Intact Os_TE_472203 Os_TE_472203 Chr3 26331441 26332613 + CACTA-B 1103 0.8398 (2454/2922) 1 Intact Os_TE_472204 Os_TE_472162 Chr3 26315251 26315252 - RIREX_LTR 8828 0.0017 (5/2997) 0 * * Os_TE_472147 Chr3 26298672 26298671 - STOWAWAY51_OS 246 0.0181 (54/2985) 0 * Os_TE_472146 Os_TE_472146 Chr3 26298669 26298670 - STOWAWAY51_OS 246 0.0185 (55/2976) 0 * Os_TE_472147 Os_TE_472142 Chr3 26295367 26295368 + SC-8_LTR 4951 0.0010 (3/2977) 0 * Os_TE_472141 Os_TE_472141 Chr3 26295363 26295362 - SC-8_LTR 4951 0.0010 (3/2978) 0 * Os_TE_472142 Os_TE_472109 Chr3 26280264 26280263 - ORSiTERTOOT00035 413 0.0010 (3/2974) 0 * * Os_TE_472081 Chr3 26271695 26271696 + ORSiTERTOOT00226 792 0.0003 (1/2973) 0 * * Os_TE_472076 Chr3 26270953 26270954 + RIREX_LTR 8828 0.0003 (1/2953) 0 * * Os_TE_472066 Chr3 26269918 26269919 - TNR2A 152 0.0387 (116/2998) 0 * * Os_TE_472060 Chr3 26268617 26268616 + ORSgTETNOOT00908 242 0.0372 (111/2983) 0 * * Os_TE_472054 Chr3 26267869 26267870 + OSMU5 4881 0.1268 (374/2949) 0 * Os_TE_472053 Os_TE_472053 Chr3 26267865 26267864 - OSTE15 1168 0.1187 (348/2931) 0 * Os_TE_472054 Os_TE_472052 Chr3 26267706 26267705 + STOWAWAY51_OS 246 0.0057 (17/2992) 0 * Os_TE_472051 Os_TE_472051 Chr3 26267700 26267701 - STOWAWAY51_OS 246 0.0057 (17/2991) 0 * Os_TE_472052 Os_TE_472012 Chr3 26250080 26250081 - SC-3_LTR 5748 0.0017 (5/2989) 0 * Os_TE_472011 Os_TE_472011 Chr3 26250076 26250075 + ORSiTERTOOT00296 5553 0.0017 (5/2988) 0 * Os_TE_472012 Os_TE_472001 Chr3 26247232 26247231 + SZ-37_LTR 12001 0.0013 (4/2998) 0 * * Os_TE_471999 Chr3 26246210 26246211 - ORSgTEMT02400179 221 0.0010 (3/2983) 0 * Os_TE_471998 Os_TE_471998 Chr3 26246209 26246208 - TYPEM 227 0.0010 (3/2980) 0 * Os_TE_471999 Os_TE_471903 Chr3 26200928 26200929 + TWIF 586 0.0003 (1/2943) 0 * Os_TE_471902 Os_TE_471902 Chr3 26200921 26200920 - ORSiTETNOOT00134 607 0.0003 (1/2949) 0 * Os_TE_471903 Os_TE_471882 Chr3 26190104 26190105 + ORSgTETNOOT01219 231 0.0003 (1/2998) 0 * Os_TE_471881 Os_TE_471881 Chr3 26190096 26190095 + ORSgTETNOOT00908 242 0.0003 (1/2998) 0 * Os_TE_471882 Os_TE_471880 Chr3 26189077 26189078 + ORSiTERTOOT00226 792 0.0003 (1/2982) 0 * Os_TE_471879 Os_TE_471879 Chr3 26189073 26189072 - SZ-22_LTR 4403 0.0003 (1/2985) 0 * Os_TE_471880 Os_TE_471846 Chr3 26169962 26169961 - STOWAWAY51_OS 246 0.0114 (34/2989) 0 * Os_TE_471845 Os_TE_471845 Chr3 26169956 26169957 + STOWAWAY51_OS 246 0.0114 (34/2994) 0 * Os_TE_471846 Os_TE_471812 Chr3 26163592 26163593 - ORSgTEMT01400006 213 0.0141 (42/2981) 0 * * Os_TE_471803 Chr3 26161884 26161885 + COPI2_LTR 4733 0.0010 (3/2921) 0 * Os_TE_471802 Os_TE_471802 Chr3 26161880 26161879 - COPI2_LTR 4733 0.0010 (3/2922) 0 * Os_TE_471803 Os_TE_471784 Chr3 26158010 26158009 + ORSgTEMT00100272 356 0.0030 (9/2985) 0 * Os_TE_471783 Os_TE_471783 Chr3 26158009 26158010 + NDNA1TNA_OS 334 0.0033 (10/2986) 0 * Os_TE_471784 Os_TE_471770 Chr3 26154891 26154892 + LINE5A 437 0.0010 (3/2875) 0 * * Os_TE_471766 Chr3 26151805 26151806 - ORSgTETNOOT01930 140 0.0157 (47/2992) 0 * Os_TE_471765 Os_TE_471765 Chr3 26151803 26151802 + ORSgTETNOOT01930 140 0.0157 (47/2990) 0 * Os_TE_471766 Os_TE_471748 Chr3 26144972 26144973 + ORSgTEMT04600032 273 0.0151 (45/2986) 0 * Os_TE_471747 Os_TE_471747 Chr3 26144968 26144967 - ORSgTEMT04600032 273 0.0154 (46/2986) 0 * Os_TE_471748 Os_TE_471745 Chr3 26143974 26143975 + COPIA2-LTR_OS 6433 0.0003 (1/2925) 0 * Os_TE_471744 Os_TE_471744 Chr3 26143970 26143969 - COPIA2-LTR_OS 6433 0.0003 (1/2923) 0 * Os_TE_471745 Os_TE_471732 Chr3 26138568 26138569 + ORSiTERTOOT00027 10853 0.0012 (3/2448) 0 * * Os_TE_471705 Chr3 26115268 26115269 + RIREX_LTR 8828 0.0013 (4/2963) 0 * Os_TE_471704 Os_TE_471704 Chr3 26115264 26115263 - RIRE2_LTR 11306 0.0014 (4/2956) 0 * Os_TE_471705 Os_TE_471638 Chr3 26094834 26094835 - RIRE3_LTR 12054 0.0030 (9/2992) 0 * Os_TE_471637 Os_TE_471637 Chr3 26094828 26094827 + ORSiTETNOOT00107 906 0.0013 (4/2994) 0 * Os_TE_471638 Os_TE_471636 Chr3 26094824 26094825 - ORSiTETNOOT00107 906 0.0013 (4/2997) 0 * * Os_TE_471606 Chr3 26081237 26081238 - RIREX_LTR 8828 0.0003 (1/2985) 0 * * Os_TE_471602 Chr3 26078902 26078901 - COPIA2-LTR_OS 6433 0.0010 (3/2934) 0 * * Os_TE_471598 Chr3 26077057 26077058 + MPING 430 0.0003 (1/2993) 0 * Os_TE_471597 Os_TE_471597 Chr3 26077055 26077054 - MPING 430 0.0003 (1/2995) 0 * Os_TE_471598 Os_TE_471595 Chr3 26074461 26074462 - MPING 430 0.0003 (1/2973) 0 * Os_TE_471594 Os_TE_471594 Chr3 26074459 26074458 + MPING 430 0.0003 (1/2976) 0 * Os_TE_471595 Os_TE_471541 Chr3 26052881 26052880 - INDITTO 263 0.0027 (8/2993) 0 * * Os_TE_471539 Chr3 26052679 26052680 + MPING 430 0.0003 (1/2993) 0 * Os_TE_471538 Os_TE_471538 Chr3 26052677 26052676 - MPING 430 0.0003 (1/2997) 0 * Os_TE_471539 Os_TE_471537 Chr3 26051645 26051646 + INDITTO 263 0.0020 (6/2973) 0 * Os_TE_471536 Os_TE_471536 Chr3 26051643 26051642 - INDITTO 263 0.0020 (6/2973) 0 * Os_TE_471537 Os_TE_471502 Chr3 26044008 26044007 + STOWAWAY51_OS 246 0.0094 (28/2990) 0 * Os_TE_471501 Os_TE_471501 Chr3 26044002 26044003 + ORSgTEMT01601591 242 0.0100 (30/2988) 0 * Os_TE_471502 Os_TE_471476 Chr3 26030850 26030849 - RIRE3_LTR 12054 0.1081 (324/2996) 0 * * Os_TE_471432 Chr3 26005811 26005812 - MPING 430 0.0043 (13/2995) 0 * Os_TE_471431 Os_TE_471431 Chr3 26005809 26005808 + MPING 430 0.0047 (14/2997) 0 * Os_TE_471432 Os_TE_471420 Chr3 25999373 25999372 - ORSgTEMT00901138 254 0.0007 (1/1348) -1 * * Os_TE_471405 Chr3 25994533 25994534 - COPIA2-LTR_OS 6433 0.0017 (5/2987) 0 * Os_TE_471404 Os_TE_471404 Chr3 25994529 25994528 + COPIA2-LTR_OS 6433 0.0017 (5/2994) 0 * Os_TE_471405 Os_TE_471402 Chr3 25992185 25992186 + F569 228 0.1077 (322/2990) 0 * * Os_TE_471395 Chr3 25989942 25989943 + ORSiTERTOOT00028 8600 0.0007 (2/2996) 0 * Os_TE_471394 Os_TE_471394 Chr3 25989938 25989937 - TRUNCATOR2_LTR 2904 0.0007 (2/2996) 0 * Os_TE_471395 Os_TE_471319 Chr3 25958795 25958796 + SZ-40LTR 2465 0.0010 (3/2961) 0 * Os_TE_471318 Os_TE_471318 Chr3 25958791 25958790 - GYPSY-A_LTR 8951 0.0010 (3/2959) 0 * Os_TE_471319 Os_TE_471310 Chr3 25956480 25956481 + RETROSAT2LTRA 3112 0.0584 (174/2979) 0 * * Os_TE_471287 Chr3 25947420 25947419 - STOWAWAY51_OS 246 0.0003 (1/2969) 0 * Os_TE_471286 Os_TE_471286 Chr3 25947414 25947415 + STOWAWAY51_OS 246 0.0003 (1/2978) 0 * Os_TE_471287 Os_TE_471260 Chr3 25938584 25938585 + ORSgTEMT02200001 208 0.0007 (2/2914) 0 * * Os_TE_471255 Chr3 25938292 25938293 - SZ-22_LTR 4403 0.0004 (1/2769) 0 * * Os_TE_471253 Chr3 25938066 25938067 + TNR9 176 0.0004 (1/2829) 0 * * Os_TE_471224 Chr3 25934027 25934028 - ORSgTETNOOT01760 137 0.0010 (3/2974) 0 * * Os_TE_471216 Chr3 25932028 25932029 + RETROSAT2LTRA 3112 0.0547 (162/2964) 0 * Os_TE_471215 Os_TE_471215 Chr3 25932024 25932023 - RETROSAT3_LTR 11537 0.0544 (161/2961) 0 * Os_TE_471216 Os_TE_471174 Chr3 25925266 25925267 - COPIA2-LTR_OS 6433 0.0213 (62/2910) 0 * Os_TE_471173 Os_TE_471173 Chr3 25925262 25925261 + COPIA2-LTR_OS 6433 0.0180 (52/2892) 0 * Os_TE_471174 Os_TE_471171 Chr3 25924068 25924069 + SPMLIKE 10989 0.0007 (2/2941) 0 * Os_TE_471170 Os_TE_471170 Chr3 25924066 25924065 - ORSgTETN00200001 10994 0.0007 (2/2948) 0 * Os_TE_471171 Os_TE_471169 Chr3 25923683 25923684 + MPING 430 0.0003 (1/2973) 0 * Os_TE_471168 Os_TE_471168 Chr3 25923681 25923680 - MPING 430 0.0003 (1/2970) 0 * Os_TE_471169 Os_TE_471164 Chr3 25923159 25923160 - EnSpm-13_OS 11171 0.0051 (15/2949) 0 * Os_TE_471163 Os_TE_471163 Chr3 25923157 25923156 + EnSpm-13_OS 11171 0.0054 (15/2799) 0 * Os_TE_471164 Os_TE_471158 Chr3 25920494 25920493 + F770 284 0.0129 (38/2949) 0 * * Os_TE_471136 Chr3 25918764 25918765 - RETRO1_LTR 8314 0.0014 (4/2821) 0 * Os_TE_471135 Os_TE_471135 Chr3 25918760 25918759 + RETRO2A_LTR 12895 0.0011 (3/2826) 0 * Os_TE_471136 Os_TE_471117 Chr3 25914973 25914972 - ORSgTEMT01602413 239 0.0004 (1/2831) 0 * * Os_TE_471103 Chr3 25908557 25908558 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_471102 Os_TE_471102 Chr3 25908553 25908552 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_471103 Os_TE_471086 Chr3 25906165 25906166 + MPING 430 0.0003 (1/2991) 0 * Os_TE_471085 Os_TE_471085 Chr3 25906163 25906162 - MPING 430 0.0007 (2/2994) 0 * Os_TE_471086 Os_TE_471060 Chr3 25898194 25898193 + COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * * Os_TE_471018 Chr3 25881542 25881541 + STOWAWAY41_OS 264 0.0004 (1/2307) 0 * * Os_TE_471008 Chr3 25880409 25880408 - MuDR4_OS 7610 0.0053 (15/2808) 0 * * Os_TE_470994 Chr3 25877369 25877370 + COPI2_LTR 4733 0.0003 (1/2975) 0 * Os_TE_470993 Os_TE_470993 Chr3 25877365 25877364 - COPI2_LTR 4733 0.0003 (1/2972) 0 * Os_TE_470994 Os_TE_470975 Chr3 25861847 25861848 + TRUNCATOR 2918 0.0013 (4/2994) 0 * * Os_TE_470946 Chr3 25849467 25849468 - NDNA1TNA_OS 334 0.0071 (21/2975) 0 * * Os_TE_470940 Chr3 25846231 25846230 - ORSgTEMT02000051 195 0.0695 (208/2991) 0 * * Os_TE_470934 Chr3 25840233 25840232 + MPING 430 0.0054 (16/2977) 0 * * Os_TE_470931 Chr3 25839971 25839972 - DITAILA 257 0.0017 (5/2964) 0 * * Os_TE_470930 Chr3 25839940 25839941 + OLO24 345 0.0067 (20/2968) 0 * Os_TE_470929 Os_TE_470929 Chr3 25839938 25839937 - OLO24 345 0.0064 (19/2960) 0 * Os_TE_470930 Os_TE_470914 Chr3 25834904 25834905 + SPMLIKE 10989 0.0003 (1/2982) 0 * * Os_TE_470905 Chr3 25834188 25834189 - RETRO1_LTR 8314 0.0003 (1/2984) 0 * * Os_TE_470887 Chr3 25827677 25827678 - DS-RICE2N 613 0.0052 (15/2904) 0 * Os_TE_470886 Os_TE_470886 Chr3 25827670 25827669 + DS-RICE4N 715 0.0045 (13/2906) 0 * Os_TE_470887 Os_TE_470876 Chr3 25826047 25826046 + TRUNCATOR 2918 0.0754 (222/2945) 0 * Os_TE_470875 Os_TE_470875 Chr3 25826046 25826047 - TRUNCATOR 2918 0.0616 (179/2904) 0 * Os_TE_470876 Os_TE_470728 Chr3 25782926 25782927 - ORSgTETN00200001 10994 0.0054 (15/2798) 0 * Os_TE_470727 Os_TE_470727 Chr3 25782924 25782923 + SPMLIKE 10989 0.0054 (15/2795) 0 * Os_TE_470728 Os_TE_470648 Chr3 25761021 25761022 + NDNA1TNA_OS 334 0.0059 (17/2868) 0 * Os_TE_470647 Os_TE_470647 Chr3 25761020 25761019 - NDNA1TNA_OS 334 0.0063 (18/2861) 0 * Os_TE_470648 Os_TE_470590 Chr3 25737399 25737400 - RIREX_LTR 8828 0.0177 (49/2767) 0 * Os_TE_470589 Os_TE_470589 Chr3 25737395 25737394 + RIREX_LTR 8828 0.0170 (47/2764) 0 * Os_TE_470590 Os_TE_470584 Chr3 25736511 25736510 + RIRE2_LTR 11306 0.0065 (18/2753) 0 * * Os_TE_470547 Chr3 25722108 25722107 + TRUNCATOR 2918 0.0003 (1/2914) 0 * Os_TE_470546 Os_TE_470546 Chr3 25722107 25722108 - TRUNCATOR 2918 0.0003 (1/2905) 0 * Os_TE_470547 Os_TE_470441 Chr3 25659769 25659768 + NDNA1TNA_OS 334 0.0064 (19/2988) 0 * Os_TE_470440 Os_TE_470440 Chr3 25659768 25659769 - NDNA1TNA_OS 334 0.0064 (19/2991) 0 * Os_TE_470441 Os_TE_470434 Chr3 25659027 25659028 + RIREX_LTR 8828 0.0017 (5/2985) 0 * Os_TE_470433 Os_TE_470433 Chr3 25659023 25659022 - RIREX_LTR 8828 0.0017 (5/2982) 0 * Os_TE_470434 Os_TE_470420 Chr3 25657725 25657726 + AMYLTP 383 0.0060 (18/2983) 0 * Os_TE_470419 Os_TE_470419 Chr3 25657717 25657716 - AMYLTP 383 0.0060 (18/2980) 0 * Os_TE_470420 Os_TE_470416 Chr3 25656047 25654676 + OSTE33 1012 0.8643 (2567/2970) 1 Intact * Os_TE_470388 Chr3 25651425 25651426 + COPIA2-LTR_OS 6433 0.0040 (12/2988) 0 * * Os_TE_470386 Chr3 25651185 25651186 - RIREX_LTR 8828 0.0003 (1/2962) 0 * Os_TE_470385 Os_TE_470385 Chr3 25651181 25651180 + RIREX_LTR 8828 0.0003 (1/2958) 0 * Os_TE_470386 Os_TE_470373 Chr3 25646127 25646128 - STOWAWAY11_OS 292 0.0003 (1/2982) 0 * * Os_TE_470355 Chr3 25634393 25634394 - INDITTO 263 0.0775 (219/2826) 0 * * Os_TE_470350 Chr3 25632517 25632516 + ORSiTERTOOT00226 792 0.0003 (1/2992) 0 * * Os_TE_470336 Chr3 25626460 25626461 + COPI2_LTR 4733 0.0003 (1/2979) 0 * Os_TE_470335 Os_TE_470335 Chr3 25626456 25626455 - COPI2_LTR 4733 0.0003 (1/2972) 0 * Os_TE_470336 Os_TE_470334 Chr3 25625552 25625553 - COPIA2-LTR_OS 6433 0.0370 (111/2999) 0 * Os_TE_470333 Os_TE_470333 Chr3 25625548 25625547 + COPIA2-LTR_OS 6433 0.0360 (108/2996) 0 * Os_TE_470334 Os_TE_470311 Chr3 25616982 25616983 + OSTE9 421 0.0021 (6/2855) 0 * Os_TE_470310 Os_TE_470310 Chr3 25616978 25616977 - OSTE9 421 0.0021 (6/2866) 0 * Os_TE_470311 Os_TE_470303 Chr3 25613883 25613882 + ORSgTETNOOT00908 242 0.0003 (1/2902) 0 * * Os_TE_470301 Chr3 25613142 25613141 + RETRO2_LTR 12874 0.1055 (301/2853) 0 * * Os_TE_470295 Chr3 25612580 25612581 + RETRO2A_LTR 12895 0.0050 (15/2975) 0 * Os_TE_470294 Os_TE_470294 Chr3 25612576 25612575 - RETRO2A_LTR 12895 0.0044 (13/2982) 0 * Os_TE_470295 Os_TE_470251 Chr3 25597470 25597471 + SZ-9LTR 965 0.0190 (57/2994) 0 * * Os_TE_470238 Chr3 25594750 25594751 + STOWAWAY51_OS 246 0.0003 (1/2990) 0 * * Os_TE_470231 Chr3 25586159 25586160 - MPING 430 0.0003 (1/2959) 0 * * Os_TE_470223 Chr3 25583599 25583600 + MERMITEJ 1498 0.0003 (1/2892) 0 * Os_TE_470222 Os_TE_470222 Chr3 25583594 25583593 + MERMITED 1572 0.0003 (1/2885) 0 * Os_TE_470223 Os_TE_470203 Chr3 25573490 25573491 + COPIA2-LTR_OS 6433 0.0007 (2/2914) -1 * Os_TE_470202 Os_TE_470202 Chr3 25573486 25573485 - COPIA2-LTR_OS 6433 0.0014 (4/2919) 0 * Os_TE_470203 Os_TE_470200 Chr3 25573241 25573242 - COPIA2-LTR_OS 6433 0.0003 (1/2971) 0 * * Os_TE_470159 Chr3 25559024 25559025 + RIRE2_LTR 11306 0.0010 (3/2977) 0 * * Os_TE_470151 Chr3 25551811 25551812 - ORSgTEMT00101341 314 0.0208 (62/2985) 0 * * Os_TE_470144 Chr3 25549763 25549764 + ORSgTEMT01400032 215 0.0248 (73/2939) 0 * * Os_TE_470140 Chr3 25546476 25546477 + TREP215 239 0.0238 (71/2978) 0 * * Os_TE_470139 Chr3 25545073 25545074 - RIREX_LTR 8828 0.0014 (4/2812) 0 * * Os_TE_470137 Chr3 25545063 25545062 - RIREX_LTR 8828 0.0003 (1/2859) 0 * * Os_TE_470131 Chr3 25544249 25544250 + MERMITEB 1610 0.0227 (68/2990) 0 * Os_TE_470130 Os_TE_470130 Chr3 25544243 25544242 - MERMITE18B 1306 0.0251 (75/2989) 0 * Os_TE_470131 Os_TE_470121 Chr3 25542994 25542995 - ORSgTEMT00901723 248 0.0288 (86/2987) 0 * * Os_TE_470119 Chr3 25542881 25541756 + RETRO2_LTR 12874 0.8195 (2442/2980) 1 Solo_LTR Os_TE_470118 Os_TE_470118 Chr3 25541756 25542881 - RETRO2_LTR 12874 0.8208 (2450/2985) 1 Solo_LTR Os_TE_470119 Os_TE_470102 Chr3 25538266 25538265 - CENTRE 280 0.0010 (3/2983) 0 * * Os_TE_470101 Chr3 25537874 25537875 + COPIA2-LTR_OS 6433 0.0003 (1/2981) 0 * * Os_TE_470099 Chr3 25537292 25537291 + ORSgTEMT00600376 329 0.0014 (4/2832) 0 * * Os_TE_470083 Chr3 25527933 25527934 + OSTE33 1012 0.2630 (677/2574) 0 * Os_TE_470082 Os_TE_470082 Chr3 25527924 25527923 + OSTE33 1012 0.3112 (844/2712) 0 * Os_TE_470083 Os_TE_470081 Chr3 25527870 25527871 - ORSgTEMT01700317 132 0.1207 (77/638) -1 * * Os_TE_470029 Chr3 25482336 25482337 + ORSgTEMT02400014 229 0.4213 (1242/2948) 0 * * Os_TE_470026 Chr3 25481266 25481267 - RETRO2_LTR 12874 0.0053 (16/2998) 0 * * Os_TE_470022 Chr3 25480072 25480073 + CACTA-H 1152 0.0017 (5/2979) 0 * Os_TE_470021 Os_TE_470021 Chr3 25480070 25480069 - CACTA-I 1124 0.0017 (5/2977) 0 * Os_TE_470022 Os_TE_469993 Chr3 25471669 25471670 - RIREX_LTR 8828 0.0013 (4/2992) 0 * * Os_TE_469963 Chr3 25466401 25466400 - F569 228 0.0064 (18/2808) 0 * Os_TE_469962 Os_TE_469962 Chr3 25466395 25466396 + F569 228 0.0060 (17/2838) 0 * Os_TE_469963 Os_TE_469954 Chr3 25463272 25463273 - ORSgTEMT02000040 196 0.0064 (19/2982) 0 * * Os_TE_469832 Chr3 25428063 25428064 + RIRE3_LTR 12054 0.0034 (10/2959) 0 * * Os_TE_469743 Chr3 25405327 25405328 - TRUNCATOR2_LTR 2904 0.0010 (3/2959) 0 * * Os_TE_469734 Chr3 25402474 25402473 - TRUNCATOR2_LTR 2904 0.1169 (320/2737) 0 * * Os_TE_469733 Chr3 25402291 25401958 + NDNA1TNA_OS 334 0.5264 (1445/2745) 0.8 Intact Os_TE_469731 Os_TE_469731 Chr3 25401955 25402289 + ORSgTEMT00101674 340 0.5299 (1435/2708) 1 Intact Os_TE_469733 Os_TE_469679 Chr3 25373588 25373589 - COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_469678 Os_TE_469678 Chr3 25373584 25373583 + COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_469679 Os_TE_469587 Chr3 25334448 25334449 + MERMITEA 1710 0.0018 (1/558) 0 * * Os_TE_469586 Chr3 25333722 25333723 + COPI2_LTR 4733 0.0013 (4/2992) 0 * Os_TE_469585 Os_TE_469585 Chr3 25333718 25333717 - COPI2_LTR 4733 0.0013 (4/2994) 0 * Os_TE_469586 Os_TE_469548 Chr3 25319084 25319085 + COPI2_LTR 4733 0.0003 (1/2941) 0 * * Os_TE_469499 Chr3 25310488 25310487 + TRUNCATOR 2918 0.0785 (229/2916) 0 * Os_TE_469498 Os_TE_469498 Chr3 25310487 25310488 - TRUNCATOR 2918 0.0753 (219/2910) 0 * Os_TE_469499 Os_TE_469470 Chr3 25301556 25301557 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * * Os_TE_469462 Chr3 25296388 25296389 + CACTA-M 1129 0.0040 (12/2986) 0 * Os_TE_469461 Os_TE_469461 Chr3 25296386 25296385 - CACTA-M 1129 0.0044 (13/2986) 0 * Os_TE_469462 Os_TE_469446 Chr3 25292382 25292381 + MPING 430 0.0003 (1/2949) 0 * * Os_TE_469445 Chr3 25292379 25292380 - CLOUD 734 0.0027 (8/2945) 0 * Os_TE_469444 Os_TE_469444 Chr3 25292371 25292370 - CLOUD 734 0.0027 (8/2946) 0 * Os_TE_469445 Os_TE_469443 Chr3 25292295 25292296 + INDITTO 263 0.0007 (2/2971) 0 * Os_TE_469442 Os_TE_469442 Chr3 25292293 25292292 - INDITTO 263 0.0007 (2/2975) 0 * Os_TE_469443 Os_TE_469392 Chr3 25274720 25274719 - ORSgTEMT00900892 250 0.0017 (5/2981) 0 * Os_TE_469391 Os_TE_469391 Chr3 25274716 25274717 + ORSgTEMT00901844 250 0.0013 (4/2967) 0 * Os_TE_469392 Os_TE_469390 Chr3 25273858 25273859 + MPING 430 0.0004 (1/2712) 0 * Os_TE_469389 Os_TE_469389 Chr3 25273856 25273855 - MPING 430 0.0004 (1/2734) 0 * Os_TE_469390 Os_TE_469384 Chr3 25273145 25273146 - MuDR2_OS 6770 0.3309 (972/2937) 0 * Os_TE_469383 Os_TE_469383 Chr3 25273136 25273135 + MuDR2_OS 6770 0.3092 (881/2849) 0 * Os_TE_469384 Os_TE_469369 Chr3 25260376 25260377 - SETARIA1 1293 0.0004 (1/2807) 0 * * Os_TE_469314 Chr3 25235201 25235202 - SC-3_LTR 5748 0.0003 (1/2996) 0 * Os_TE_469313 Os_TE_469313 Chr3 25235197 25235196 + ORSiTERTOOT00296 5553 0.0003 (1/2991) 0 * Os_TE_469314 Os_TE_469312 Chr3 25234773 25234774 - INDITTO 263 0.0826 (247/2992) 0 * Os_TE_469311 Os_TE_469311 Chr3 25234771 25234770 + INDITTO 263 0.0822 (246/2992) 0 * Os_TE_469312 Os_TE_469299 Chr3 25231837 25231838 - COPIA2-LTR_OS 6433 0.0013 (4/2989) 0 * * Os_TE_469285 Chr3 25226538 25226539 - COPIA2-LTR_OS 6433 0.0017 (5/2984) 0 * Os_TE_469284 Os_TE_469284 Chr3 25226534 25226533 + COPIA2-LTR_OS 6433 0.0017 (5/2979) 0 * Os_TE_469285 Os_TE_469281 Chr3 25223545 25223544 - SZ-7A_LTR 11400 0.0014 (4/2960) 0 * * Os_TE_469258 Chr3 25213441 25213442 - COPIA2-LTR_OS 6433 0.0003 (1/2929) 0 * * Os_TE_469188 Chr3 25196261 25196260 + OLO24B 335 0.0007 (2/2964) 0 * * Os_TE_469183 Chr3 25195947 25195948 + ORSgTEMT00501165 134 0.0007 (2/2694) 0 * * Os_TE_469145 Chr3 25176304 25176305 - COPI2_LTR 4733 0.0003 (1/2942) 0 * Os_TE_469144 Os_TE_469144 Chr3 25176300 25176299 + COPI2_LTR 4733 0.0003 (1/2941) 0 * Os_TE_469145 Os_TE_469143 Chr3 25175815 25175816 - COPIA2-LTR_OS 6433 0.0003 (1/2938) 0 * Os_TE_469142 Os_TE_469142 Chr3 25175811 25175810 + COPIA2-LTR_OS 6433 0.0003 (1/2934) 0 * Os_TE_469143 Os_TE_469118 Chr3 25168271 25168272 - ORSgTEMT01602413 239 0.0019 (5/2700) 0 * * Os_TE_469111 Chr3 25165082 25165083 - COPIA2-LTR_OS 6433 0.0013 (4/2996) 0 * Os_TE_469110 Os_TE_469110 Chr3 25165078 25165077 + COPIA2-LTR_OS 6433 0.0013 (4/2998) 0 * Os_TE_469111 Os_TE_469088 Chr3 25158855 25158854 + SEVERIN-2 1952 0.0010 (3/2988) 0 * Os_TE_469087 Os_TE_469087 Chr3 25158854 25158855 - SEVERIN-2 1952 0.0010 (3/2989) 0 * Os_TE_469088 Os_TE_469059 Chr3 25151659 25151658 - SZ-COM 1308 0.0005 (1/2118) 0 * * Os_TE_469044 Chr3 25141239 25141238 - TRUNCATOR2_LTR 2904 0.0017 (5/2977) 0 * * Os_TE_469043 Chr3 25141186 25141187 - TNR2A 152 0.0020 (6/2960) 0 * * Os_TE_469001 Chr3 25126724 25126391 + NDNA1TNA_OS 334 0.3650 (1092/2992) 1 Intact Os_TE_468998 Os_TE_468998 Chr3 25126389 25126707 + ORSgTEMT00100531 325 0.3633 (1084/2984) 1 Intact Os_TE_469001 Os_TE_468984 Chr3 25122168 25122169 - SC-3_LTR 5748 0.0010 (3/2968) 0 * Os_TE_468983 Os_TE_468983 Chr3 25122164 25122163 + ORSiTERTOOT00296 5553 0.0010 (3/2963) 0 * Os_TE_468984 Os_TE_468981 Chr3 25119833 25119834 + SC-3_LTR 5748 0.0013 (4/2991) 0 * Os_TE_468980 Os_TE_468980 Chr3 25119829 25119828 - SC-3_LTR 5748 0.0013 (4/2993) 0 * Os_TE_468981 Os_TE_468979 Chr3 25119790 25119791 - SC-8_LTR 4951 0.0013 (4/2992) 0 * Os_TE_468978 Os_TE_468978 Chr3 25119786 25119785 + SC-8_LTR 4951 0.0017 (5/2992) 0 * Os_TE_468979 Os_TE_468974 Chr3 25116396 25116397 - SC-8_LTR 4951 0.0007 (2/2977) 0 * Os_TE_468973 Os_TE_468973 Chr3 25116392 25116391 + SC-8_LTR 4951 0.0007 (2/2978) 0 * Os_TE_468974 Os_TE_468967 Chr3 25112417 25112418 - Mudr5_OS 5952 0.0007 (2/2916) 0 * * Os_TE_468909 Chr3 25087332 25086843 - OSTE20 496 0.2072 (484/2336) 1 Intact Os_TE_468907 Os_TE_468907 Chr3 25086842 25087330 - OSTE20 496 0.3121 (826/2647) 1 Intact Os_TE_468909 Os_TE_468906 Chr3 25086832 25086833 + RIRE2_LTR 11306 0.0056 (15/2672) 0 * * Os_TE_468896 Chr3 25084956 25084957 - MPING 430 0.0018 (2/1093) 0 * Os_TE_468895 Os_TE_468895 Chr3 25084954 25084953 + MPING 430 0.0007 (2/2964) 0 * Os_TE_468896 Os_TE_468868 Chr3 25080100 25080101 + COPI2_LTR 4733 0.0003 (1/2981) 0 * * Os_TE_468852 Chr3 25074937 25074938 + MPING 430 0.0003 (1/2994) 0 * Os_TE_468851 Os_TE_468851 Chr3 25074935 25074934 - MPING 430 0.0003 (1/2995) 0 * Os_TE_468852 Os_TE_468812 Chr3 25052918 25052919 + ORSgTEMT00502437 145 0.0003 (1/2910) 0 * * Os_TE_468718 Chr3 24990740 24990739 + ORSgTETN00200005 1121 0.0607 (179/2948) 0 * Os_TE_468717 Os_TE_468717 Chr3 24990739 24990740 + CACTA-H 1152 0.0619 (183/2955) 0 * Os_TE_468718 Os_TE_468699 Chr3 24983610 24970768 - RETRO2_LTR 12874 0.4262 (1271/2982) 1 Intact Os_TE_468683 Os_TE_468683 Chr3 24970768 24983610 + RETRO2_LTR 12874 0.4223 (1247/2953) 1 Intact Os_TE_468699 Os_TE_468672 Chr3 24969424 24969210 - ORSgTETNOOT02565 240 0.4216 (1235/2929) 1 Intact Os_TE_468670 Os_TE_468670 Chr3 24969216 24969421 + ORSgTETNOOT01219 231 0.4325 (1275/2948) 1 Intact Os_TE_468672 Os_TE_468661 Chr3 24966172 24966171 - RPO_OS 1983 0.0936 (279/2982) 0 * Os_TE_468660 Os_TE_468660 Chr3 24966171 24966172 + RPO_OS 1983 0.0925 (276/2983) 0 * Os_TE_468661 Os_TE_468648 Chr3 24964270 24964271 - COPI2_LTR 4733 0.0003 (1/2967) 0 * * Os_TE_468638 Chr3 24961241 24961242 + ORSiTERTOOT00226 792 0.0006 (1/1741) 0 * Os_TE_468637 Os_TE_468637 Chr3 24961237 24961236 - SZ-22_LTR 4403 0.0004 (1/2784) 0 * Os_TE_468638 Os_TE_468636 Chr3 24961215 24961216 + TRUNCATOR2_LTR 2904 0.0003 (1/2892) 0 * Os_TE_468635 Os_TE_468635 Chr3 24961211 24961210 - TRUNCATOR2_LTR 2904 0.0004 (1/2576) 0 * Os_TE_468636 Os_TE_468634 Chr3 24958605 24958606 + SC-8_LTR 4951 0.0003 (1/2995) 0 * Os_TE_468633 Os_TE_468633 Chr3 24958601 24958600 - SC-8_LTR 4951 0.0003 (1/2996) 0 * Os_TE_468634 Os_TE_468632 Chr3 24958135 24956753 + OSTE33 1012 0.4466 (1325/2967) 1 Intact Os_TE_468631 Os_TE_468631 Chr3 24956753 24958135 + OSTE33 1012 0.4186 (1195/2855) 1 Intact Os_TE_468632 Os_TE_468630 Chr3 24955112 24955113 + ORSiTERTOOT00074 4935 0.0023 (7/2995) 0 * Os_TE_468629 Os_TE_468629 Chr3 24955108 24955107 - ORSiTERTOOT00074 4935 0.0023 (7/2988) 0 * Os_TE_468630 Os_TE_468571 Chr3 24925547 24925548 - ORSgTETN00200001 10994 0.4167 (1143/2743) 0 * Os_TE_468570 Os_TE_468570 Chr3 24925545 24925544 + SPMLIKE 10989 0.4228 (1178/2786) 0 * Os_TE_468571 Os_TE_468528 Chr3 24919756 24919530 - TYPEM 227 0.4375 (1299/2969) 1 Intact Os_TE_468527 Os_TE_468527 Chr3 24919529 24919748 - ORSgTEMT02400179 221 0.4362 (1295/2969) 1 Intact Os_TE_468528 Os_TE_468525 Chr3 24918041 24918042 + MPING 430 0.0007 (2/2985) 0 * Os_TE_468524 Os_TE_468524 Chr3 24918039 24918038 - MPING 430 0.0007 (2/2990) 0 * Os_TE_468525 Os_TE_468523 Chr3 24917965 24917966 - INDITTO 263 0.0003 (1/2986) 0 * * Os_TE_468487 Chr3 24900497 24900496 - ORSgTEMT00700002 381 0.0003 (1/2927) 0 * Os_TE_468486 Os_TE_468486 Chr3 24900490 24900491 + ORSgTEMT00700017 386 0.0003 (1/2930) 0 * Os_TE_468487 Os_TE_468484 Chr3 24900256 24900257 + TRUNCATOR2_LTR 2904 0.0003 (1/2938) 0 * Os_TE_468483 Os_TE_468483 Chr3 24900252 24900251 - TRUNCATOR2_LTR 2904 0.0003 (1/2939) 0 * Os_TE_468484 Os_TE_468479 Chr3 24898375 24898376 + SEVERIN-2 1952 0.3742 (1104/2950) 0 * * Os_TE_468475 Chr3 24895969 24895968 - RPO_OS 1983 0.0231 (69/2988) 0 * Os_TE_468474 Os_TE_468474 Chr3 24895968 24895969 + RPO_OS 1983 0.0178 (53/2982) 0 * Os_TE_468475 Os_TE_468463 Chr3 24893737 24893736 + STOWAWAY8_OS 259 0.0228 (65/2852) 0 * * Os_TE_468456 Chr3 24892108 24892107 - NDNA2TNA_OS 346 0.0226 (67/2966) 0 * * Os_TE_468454 Chr3 24891897 24884604 - COPIA2-LTR_OS 6433 0.5296 (1449/2736) 1 Intact Os_TE_468451 Os_TE_468451 Chr3 24884604 24891897 + COPIA2-LTR_OS 6433 0.4944 (1425/2882) 1 Intact Os_TE_468454 Os_TE_468450 Chr3 24881545 24881546 - MPING 430 0.0030 (9/2979) 0 * Os_TE_468449 Os_TE_468449 Chr3 24881543 24881542 + MPING 430 0.0035 (9/2560) 0 * Os_TE_468450 Os_TE_468446 Chr3 24880943 24880942 + BAJIELTR 4500 0.0239 (70/2931) 0 * * Os_TE_468438 Chr3 24878943 24878944 - RETRO2_LTR 12874 0.1276 (380/2979) 0 * Os_TE_468437 Os_TE_468437 Chr3 24878939 24878938 + RETRO2_LTR 12874 0.1326 (396/2987) 0 * Os_TE_468438 Os_TE_468428 Chr3 24876555 24876556 - COPIA2-LTR_OS 6433 0.0003 (1/2868) 0 * * Os_TE_468426 Chr3 24876097 24876096 + ORSgTEMT00500201 140 0.0231 (69/2989) 0 * * Os_TE_468415 Chr3 24874697 24874698 + ORSiTERTOOT00074 4935 0.0005 (1/1901) 0 * * Os_TE_468410 Chr3 24873457 24873458 + SPMLIKE 10989 0.3677 (1078/2932) 0 * Os_TE_468409 Os_TE_468409 Chr3 24873455 24873454 - ORSgTETN00200001 10994 0.3458 (987/2854) 0 * Os_TE_468410 Os_TE_468403 Chr3 24871993 24871992 + STOWAWAY44_OS 240 0.0003 (1/2991) 0 * * Os_TE_468398 Chr3 24870291 24870292 - RETROSAT2LTRA 3112 0.0003 (1/2947) 0 * * Os_TE_468394 Chr3 24869351 24869352 - ORSgTETN00200001 10994 0.0007 (2/2993) 0 * Os_TE_468393 Os_TE_468393 Chr3 24869349 24869348 + SPMLIKE 10989 0.0007 (2/2992) 0 * Os_TE_468394 Os_TE_468391 Chr3 24868982 24868981 + NDNA1TNA_OS 334 0.0227 (68/2992) 0 * * Os_TE_468390 Chr3 24868709 24868710 + ORSgTETNOOT00908 242 0.0003 (1/2943) 0 * * Os_TE_468379 Chr3 24862827 24862828 - TRUNCATOR2_LTR 2904 0.0005 (1/2151) 0 * * Os_TE_468377 Chr3 24860328 24860329 - OSTE20 496 0.2082 (399/1916) 0 * Os_TE_468376 Os_TE_468376 Chr3 24860324 24860323 - OSTE20 496 0.1998 (381/1907) 0 * Os_TE_468377 Os_TE_468375 Chr3 24860295 24860296 + RIREX_LTR 8828 0.0375 (72/1921) 0 * Os_TE_468374 Os_TE_468374 Chr3 24860291 24860290 - RIREX_LTR 8828 0.0379 (72/1901) 0 * Os_TE_468375 Os_TE_468361 Chr3 24855267 24855266 + ORSgTEMT01602250 243 0.3725 (1093/2934) 0 * Os_TE_468360 Os_TE_468360 Chr3 24855264 24855265 - TREP215 239 0.3793 (1116/2942) 0 * Os_TE_468361 Os_TE_468356 Chr3 24854601 24854600 - ORSgTEMT01602100 238 0.3741 (1035/2767) 0 * Os_TE_468355 Os_TE_468355 Chr3 24854597 24854598 - ORSgTEMT01602413 239 0.3745 (1056/2820) 0 * Os_TE_468356 Os_TE_468335 Chr3 24842896 24843115 - ORSgTEMT02000063 217 0.6332 (1883/2974) 1 Intact * Os_TE_468334 Chr3 24841378 24841379 - ORSgTEMT01701348 105 0.3780 (1128/2984) 0 * * Os_TE_468333 Chr3 24841075 24840922 - ORSgTEMT01701253 161 0.6447 (1905/2955) 1 Intact Os_TE_468330 Os_TE_468330 Chr3 24840924 24841073 - STOWAWAY1_OS 149 0.6383 (1897/2972) 1 Intact Os_TE_468333 Os_TE_468285 Chr3 24827524 24827261 + ORSgTEMT02300009 257 0.6297 (1842/2925) 1 Intact * Os_TE_468280 Chr3 24825565 24825564 + STOWAWAY21_OS 243 0.0005 (1/1924) 0 * * Os_TE_468273 Chr3 24822062 24822063 - ORSgTEMT02900061 318 0.0012 (3/2511) 0 * * Os_TE_468240 Chr3 24818948 24818737 - ORSgTEMT02000034 224 0.6349 (1720/2709) 1 Intact * Os_TE_468224 Chr3 24809807 24809683 - SINE16_OS 116 0.6317 (1864/2951) 1 Intact * Os_TE_468217 Chr3 24805038 24805039 - DS-RICE2N 613 0.3777 (1126/2981) 0 * Os_TE_468216 Os_TE_468216 Chr3 24805031 24805030 + DS-RICE2N 613 0.3750 (1118/2981) 0 * Os_TE_468217 Os_TE_468210 Chr3 24802879 24802880 + COPI2_LTR 4733 0.0003 (1/2975) 0 * Os_TE_468209 Os_TE_468209 Chr3 24802875 24802874 - COPI2_LTR 4733 0.0003 (1/2963) 0 * Os_TE_468210 Os_TE_468196 Chr3 24794962 24786947 - CASTAWAY 364 0.4786 (1428/2984) 1 Intact * Os_TE_468179 Chr3 24780277 24769293 - ORSgTETN00200001 10994 0.4628 (1332/2878) 1 Intact Os_TE_468177 Os_TE_468177 Chr3 24769294 24780277 + SPMLIKE 10989 0.4732 (1386/2929) 1 Intact Os_TE_468179 Os_TE_468160 Chr3 24765448 24765206 + ORSgTEMT01601525 239 0.8893 (2628/2955) 1 Intact Os_TE_468156 Os_TE_468159 Chr3 24765437 24765206 + ORSgTEMT01601018 231 0.8944 (2633/2944) 1 Intact Os_TE_468157 Os_TE_468157 Chr3 24765213 24765437 + ORSgTEMT01601571 232 0.8952 (2504/2797) 1 Intact Os_TE_468159 Os_TE_468156 Chr3 24765206 24765444 + ORSgTEMT01602004 234 0.8897 (2469/2775) 1 Intact Os_TE_468160 Os_TE_468149 Chr3 24763329 24763330 + SC-10_LTR 4920 0.0003 (1/2900) 0 * Os_TE_468148 Os_TE_468148 Chr3 24763325 24763324 - SC-10_LTR 4920 0.0003 (1/2902) 0 * Os_TE_468149 Os_TE_468113 Chr3 24752218 24752219 - ORSgTEMT00600085 364 0.1229 (367/2986) 0 * * Os_TE_468086 Chr3 24741118 24741117 - COPIA2-LTR_OS 6433 0.0003 (1/2884) 0 * * Os_TE_468085 Chr3 24740427 24740428 - RETROSAT2LTR 12796 0.0560 (112/2000) 0 * * Os_TE_468057 Chr3 24724440 24724441 + RETRO2A_LTR 12895 0.2405 (719/2989) 0 * Os_TE_468056 Os_TE_468056 Chr3 24724436 24724435 - RETRO2_LTR 12874 0.2416 (722/2988) 0 * Os_TE_468057 Os_TE_468043 Chr3 24722692 24722691 - CLOUD 734 0.0003 (1/2899) 0 * * Os_TE_468025 Chr3 24713496 24713495 + UNIQUE 158 0.0013 (4/2994) 0 * * Os_TE_468021 Chr3 24710883 24710882 + ORSgTEMT00900423 250 0.1310 (384/2932) 0 * * Os_TE_468007 Chr3 24708773 24708772 - ORSgTEMT00500205 140 0.0024 (4/1652) 0 * * Os_TE_468006 Chr3 24708737 24708738 + STOWAWAY51_OS 246 0.0003 (1/2980) 0 * * Os_TE_467980 Chr3 24699005 24699006 + SPMLIKE 10989 0.1951 (576/2952) 0 * Os_TE_467979 Os_TE_467979 Chr3 24699003 24699002 - ORSgTETN00200001 10994 0.1416 (398/2810) 0 * Os_TE_467980 Os_TE_467978 Chr3 24698685 24698684 + SEVERIN-2 1952 0.0005 (1/2134) 0 * * Os_TE_467941 Chr3 24690555 24690556 - INDITTO 263 0.2028 (603/2973) 0 * Os_TE_467940 Os_TE_467940 Chr3 24690553 24690552 + ORSgTETNOOT02316 263 0.1986 (590/2971) 0 * Os_TE_467941 Os_TE_467928 Chr3 24686063 24686064 - RIREX_LTR 8828 0.0235 (70/2981) 0 * Os_TE_467927 Os_TE_467927 Chr3 24686059 24686058 + RIREX_LTR 8828 0.0242 (72/2976) 0 * Os_TE_467928 Os_TE_467925 Chr3 24684712 24684713 - TRUNCATOR2_LTR 2904 0.0008 (2/2577) 0 * Os_TE_467924 Os_TE_467924 Chr3 24684708 24684707 + ORSiCMCM00100019 2717 0.0008 (2/2493) 0 * Os_TE_467925 Os_TE_467872 Chr3 24668277 24668278 + OSTE20 496 0.1819 (534/2936) 0 * Os_TE_467871 Os_TE_467871 Chr3 24668273 24668272 - OSTE20 496 0.1931 (575/2977) 0 * Os_TE_467872 Os_TE_467859 Chr3 24663376 24663377 - CLOUD 734 0.0003 (1/2967) 0 * Os_TE_467858 Os_TE_467858 Chr3 24663368 24663367 - CLOUD 734 0.0003 (1/2966) 0 * Os_TE_467859 Os_TE_467856 Chr3 24663276 24663275 + STOWAWAY51_OS 246 0.0003 (1/2980) 0 * * Os_TE_467854 Chr3 24662592 24662591 - RIREX_LTR 8828 0.0232 (69/2976) 0 * * Os_TE_467842 Chr3 24657786 24657787 - AMYLTP 383 0.0234 (69/2955) 0 * Os_TE_467841 Os_TE_467841 Chr3 24657778 24657777 + AMYLTP 383 0.0183 (54/2945) 0 * Os_TE_467842 Os_TE_467828 Chr3 24650281 24650280 + SZ-55_LTR 10318 0.0003 (1/2943) 0 * * Os_TE_467783 Chr3 24645687 24645686 + RETRO2A_LTR 12895 0.0003 (1/2914) 0 * * Os_TE_467782 Chr3 24644900 24644901 - TRUNCATOR2_LTR 2904 0.3622 (1059/2924) 0 * * Os_TE_467778 Chr3 24643208 24643209 + RETRO2_LTR 12874 0.0003 (1/2863) 0 * Os_TE_467777 Os_TE_467777 Chr3 24643204 24643203 - RETRO2_LTR 12874 0.0003 (1/2865) 0 * Os_TE_467778 Os_TE_467756 Chr3 24636728 24636729 + RETRO2A_LTR 12895 0.3501 (1046/2988) 0 * * Os_TE_467741 Chr3 24629719 24629718 + OSTE9 421 0.2402 (717/2985) 0 * * Os_TE_467704 Chr3 24608411 24608410 - GYPSY-A_LTR 8951 0.0009 (1/1127) 0 * * Os_TE_467692 Chr3 24602130 24602129 - JOUZHENA 607 0.0013 (4/2997) 0 * * Os_TE_467673 Chr3 24591265 24591264 + ORSgTEMT00600376 329 0.0073 (19/2589) 0 * * Os_TE_467566 Chr3 24552666 24552667 + ORSgTETNOOT01834 251 0.0007 (2/2983) 0 * * Os_TE_467552 Chr3 24548297 24548298 - ORSgTEMT01600750 238 0.0021 (6/2873) 0.15 * * Os_TE_467548 Chr3 24547810 24547811 - TEOS1 476 0.0003 (1/2885) 0 * * Os_TE_467546 Chr3 24547788 24547787 - MPING 430 0.0003 (1/2874) 0 * * Os_TE_467536 Chr3 24544972 24544971 - SZ-17_LTR 3387 0.0003 (1/2931) 0 * * Os_TE_467493 Chr3 24536489 24536490 + MUDRN5_OS 374 0.0004 (1/2706) 0 * * Os_TE_467482 Chr3 24523264 24523265 + ORSiTERTOOT00296 5553 0.0003 (1/2966) 0 * Os_TE_467481 Os_TE_467481 Chr3 24523260 24523259 - SC-3_LTR 5748 0.0003 (1/2971) 0 * Os_TE_467482 Os_TE_467430 Chr3 24503176 24503175 - ORSgTEMT01601768 238 0.6487 (1898/2926) 0 * Os_TE_467429 Os_TE_467429 Chr3 24503173 24503174 - ORSgTEMT01601432 239 0.6363 (1832/2879) 0 * Os_TE_467430 Os_TE_467422 Chr3 24500438 24500437 - ORSgTEMT00900025 250 0.0017 (5/2975) 0 * Os_TE_467421 Os_TE_467421 Chr3 24500436 24500437 + ORSgTEMT00901138 254 0.0017 (5/2969) 0 * Os_TE_467422 Os_TE_467397 Chr3 24489483 24489484 - MPING 430 0.0023 (7/2987) 0 * Os_TE_467396 Os_TE_467396 Chr3 24489481 24489480 + MPING 430 0.0023 (7/2983) 0 * Os_TE_467397 Os_TE_467350 Chr3 24476199 24476200 - SZ-4_LTR 5991 0.0016 (1/638) -1 * * Os_TE_467244 Chr3 24431127 24431128 - SC-3_LTR 5748 0.0003 (1/2995) 0 * Os_TE_467243 Os_TE_467243 Chr3 24431123 24431122 + ORSiTERTOOT00296 5553 0.0003 (1/2994) 0 * Os_TE_467244 Os_TE_467206 Chr3 24420779 24420778 + MDR3 6978 0.0004 (1/2818) 0 * * Os_TE_467205 Chr3 24420383 24420384 + HARB-1_OS 5166 0.0003 (1/2910) 0 * Os_TE_467204 Os_TE_467204 Chr3 24420378 24420377 - HARB-1_OS 5166 0.0003 (1/2911) 0 * Os_TE_467205 Os_TE_467177 Chr3 24405442 24405443 + COPI2_LTR 4733 0.0003 (1/2993) 0 * Os_TE_467176 Os_TE_467176 Chr3 24405438 24405437 - COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_467177 Os_TE_467165 Chr3 24397777 24397778 + ORSiTEMT01000008 242 0.0003 (1/2965) 0 * Os_TE_467164 Os_TE_467164 Chr3 24397775 24397774 - ORSiTEMT01000008 242 0.0003 (1/2970) 0 * Os_TE_467165 Os_TE_467116 Chr3 24381012 24381013 + RIREX_LTR 8828 0.0003 (1/2993) 0 * Os_TE_467115 Os_TE_467115 Chr3 24381008 24381007 - RIREX_LTR 8828 0.0003 (1/2990) 0 * Os_TE_467116 Os_TE_467114 Chr3 24380838 24380839 - MPING 430 0.0007 (2/2995) 0 * Os_TE_467113 Os_TE_467113 Chr3 24380836 24380835 + MPING 430 0.0007 (2/2993) 0 * Os_TE_467114 Os_TE_467098 Chr3 24379071 24379072 - ORSgTETN00200001 10994 0.0003 (1/2994) 0 * * Os_TE_467096 Chr3 24379053 24379054 + ORSiTERTOOT00034 791 0.0007 (2/2998) 0 * * Os_TE_467076 Chr3 24369366 24369365 - COPIA2-LTR_OS 6433 0.0007 (2/2966) 0 * * Os_TE_467068 Chr3 24366818 24366819 + COPI2_LTR 4733 0.0003 (1/2950) 0 * Os_TE_467067 Os_TE_467067 Chr3 24366814 24366813 - COPI2_LTR 4733 0.0003 (1/2931) 0 * Os_TE_467068 Os_TE_467038 Chr3 24358830 24358829 - KRISPIE 956 0.0003 (1/2968) 0 * * Os_TE_467014 Chr3 24341147 24341146 - AMYLTP 383 0.0018 (5/2844) 0 * * Os_TE_466926 Chr3 24308118 24308119 - SZ-22_LTR 4403 0.0003 (1/2984) 0 * Os_TE_466925 Os_TE_466925 Chr3 24308114 24308113 + ORSiTERTOOT00034 791 0.0003 (1/2984) 0 * Os_TE_466926 Os_TE_466924 Chr3 24307925 24307924 + STOWAWAY18_OS 216 0.0017 (5/2989) 0 * Os_TE_466923 Os_TE_466923 Chr3 24307916 24307917 - STOWAWAY18_OS 216 0.0017 (5/2991) 0 * Os_TE_466924 Os_TE_466880 Chr3 24300358 24300359 + ORSgTEMT01602181 239 0.0003 (1/2899) 0 * * Os_TE_466873 Chr3 24297355 24297354 + COPI2_LTR 4733 0.0003 (1/2980) 0 * * Os_TE_466872 Chr3 24297058 24297057 + ORSgTETNOOT00908 242 0.0007 (2/2971) 0 * * Os_TE_466828 Chr3 24288451 24288450 + ORSgTEMT00800040 372 0.6849 (2045/2986) 0 * * Os_TE_466772 Chr3 24281508 24281507 + MERMITE18D 1491 0.0018 (4/2176) -1 * * Os_TE_466769 Chr3 24281412 24281411 + RIREX_LTR 8828 0.0004 (1/2853) 0 * * Os_TE_466734 Chr3 24267253 24267254 - RIREX_LTR 8828 0.0003 (1/2990) 0 * Os_TE_466733 Os_TE_466733 Chr3 24267249 24267248 + RIREX_LTR 8828 0.0003 (1/2991) 0 * Os_TE_466734 Os_TE_466704 Chr3 24257684 24257683 + CLOUD-7 495 0.0003 (1/2986) 0 * * Os_TE_466685 Chr3 24246894 24246893 - STOWAWAY51_OS 246 0.0007 (2/2997) 0 * * Os_TE_466646 Chr3 24231036 24231037 - RETROSAT4_LTR 13504 0.0013 (4/2990) 0 * Os_TE_466645 Os_TE_466645 Chr3 24231032 24231031 + RETROSAT4_LTR 13504 0.0017 (5/2991) 0 * Os_TE_466646 Os_TE_466614 Chr3 24215204 24215205 - HARB-1_OS 5166 0.0017 (5/2996) 0 * Os_TE_466613 Os_TE_466613 Chr3 24215202 24215201 + HARB-1_OS 5166 0.0017 (5/2995) 0 * Os_TE_466614 Os_TE_466589 Chr3 24204680 24204681 - RIRE3A_LTR 10580 0.0003 (1/2970) 0 * Os_TE_466588 Os_TE_466588 Chr3 24204676 24204675 + RIRE3A_LTR 10580 0.0003 (1/2966) 0 * Os_TE_466589 Os_TE_466586 Chr3 24204017 24204016 - ORSgTEMT01601432 239 0.0003 (1/2985) 0 * Os_TE_466585 Os_TE_466585 Chr3 24204014 24204015 + ORSgTEMT01602181 239 0.0003 (1/2989) 0 * Os_TE_466586 Os_TE_466580 Chr3 24202660 24202659 + MPING 430 0.0007 (2/2950) 0 * * Os_TE_466579 Chr3 24201625 24201626 + COPIA2-LTR_OS 6433 0.0003 (1/2977) 0 * Os_TE_466578 Os_TE_466578 Chr3 24201621 24201620 - COPIA2-LTR_OS 6433 0.0003 (1/2984) 0 * Os_TE_466579 Os_TE_466564 Chr3 24187703 24187704 + TRUNCATOR 2918 0.0329 (98/2981) 0 * * Os_TE_466556 Chr3 24176241 24176242 - SC-3_LTR 5748 0.0003 (1/2987) 0 * Os_TE_466555 Os_TE_466555 Chr3 24176237 24176236 + ORSiTERTOOT00296 5553 0.0003 (1/2986) 0 * Os_TE_466556 Os_TE_466549 Chr3 24174099 24174098 + OSTE33 1012 0.0009 (1/1119) 0 * * Os_TE_466509 Chr3 24162011 24162012 + ORSiTERTOOT00004 4000 0.0008 (1/1187) 0 * * Os_TE_466508 Chr3 24161605 24161606 + COPIA2-LTR_OS 6433 0.0008 (1/1193) 0 * Os_TE_466507 Os_TE_466507 Chr3 24161601 24161600 - COPIA2-LTR_OS 6433 0.0008 (1/1194) 0 * Os_TE_466508 Os_TE_466501 Chr3 24158846 24158845 + RETROSAT2LTRA 3112 0.0074 (9/1222) 0 * * Os_TE_466264 Chr3 24072720 24072719 - RILN8_OS 5085 0.0017 (5/2892) 0 * * Os_TE_466263 Chr3 24071737 24071738 + INDITTO 263 0.5968 (1730/2899) 0 * Os_TE_466262 Os_TE_466262 Chr3 24071735 24071734 - INDITTO 263 0.5958 (1722/2890) 0 * Os_TE_466263 Os_TE_466183 Chr3 24044957 24036263 + SPMLIKE 10989 0.3317 (990/2985) 1 Intact Os_TE_466176 Os_TE_466176 Chr3 24036263 24044957 - ORSgTETN00200001 10994 0.3229 (952/2948) 1 Intact Os_TE_466183 Os_TE_466175 Chr3 24036247 24036248 + SC-1_LTR 6888 0.0068 (20/2957) 0 * * Os_TE_466112 Chr3 24015250 24015251 + COPI2_LTR 4733 0.0010 (3/2972) 0 * Os_TE_466111 Os_TE_466111 Chr3 24015246 24015245 - COPI2_LTR 4733 0.0007 (2/2972) 0 * Os_TE_466112 Os_TE_466092 Chr3 24000175 24000176 - SC-8_LTR 4951 0.0010 (3/2975) 0 * Os_TE_466091 Os_TE_466091 Chr3 24000171 24000170 + ORSiTERTOOT00381 4988 0.0013 (4/2967) 0 * Os_TE_466092 Os_TE_466085 Chr3 23996017 23996016 - ORSgTEMT01602413 239 0.0013 (4/2981) 0 * Os_TE_466084 Os_TE_466084 Chr3 23996014 23996015 - ORSgTEMT01602413 239 0.0017 (5/2990) 0 * Os_TE_466085 Os_TE_466077 Chr3 23993713 23993712 - STOWAWAY51_OS 246 0.0003 (1/2974) 0 * * Os_TE_466074 Chr3 23991969 23991970 + HARB-1_OS 5166 0.0007 (2/2948) 0 * Os_TE_466073 Os_TE_466073 Chr3 23991967 23991966 - HARB-1_OS 5166 0.0007 (2/2945) 0 * Os_TE_466074 Os_TE_466070 Chr3 23991760 23991761 - STOWAWAY47_OS 148 0.0017 (5/2953) 0 * * Os_TE_466067 Chr3 23990732 23990731 - STOWAWAY11_OS 292 0.0013 (4/2984) 0 * * Os_TE_466065 Chr3 23990183 23990184 + STOWAWAY11_OS 292 0.0017 (5/2978) 0 * * Os_TE_466057 Chr3 23987379 23987380 + ORSiTETN00200006 8216 0.0003 (1/2926) 0 * Os_TE_466056 Os_TE_466056 Chr3 23987375 23987374 - ORSiTETN00200006 8216 0.0014 (4/2925) 0 * Os_TE_466057 Os_TE_466044 Chr3 23982426 23982694 - DNAUN1_OS 408 0.3271 (972/2972) 1 Intact * Os_TE_466036 Chr3 23979961 23979962 - ORSiTERTOOT00074 4935 0.0003 (1/2955) 0 * * Os_TE_466033 Chr3 23976773 23976774 - ENSPM3_OS 10837 0.0017 (5/2977) 0 * Os_TE_466032 Os_TE_466032 Chr3 23976771 23976770 + ENSPM3_OS 10837 0.0017 (5/2980) 0 * Os_TE_466033 Os_TE_466007 Chr3 23970245 23970246 - OSLINE1-2 7128 0.0023 (7/2988) 0 * * Os_TE_465935 Chr3 23931288 23931287 + ORSiTERTOOT00269 10834 0.0003 (1/2997) 0 * * Os_TE_465889 Chr3 23911381 23911382 - SC-8_LTR 4951 0.0003 (1/2975) 0 * Os_TE_465888 Os_TE_465888 Chr3 23911377 23911376 + SC-8_LTR 4951 0.0003 (1/2977) 0 * Os_TE_465889 Os_TE_465875 Chr3 23904536 23904537 - SUSU 279 0.0018 (5/2817) 0 * Os_TE_465874 Os_TE_465874 Chr3 23904534 23904533 + ORSgTEMT05000092 279 0.0018 (5/2810) 0 * Os_TE_465875 Os_TE_465872 Chr3 23903936 23903937 + RETRO1_LTR 8314 0.0198 (23/1160) 0 * * Os_TE_465860 Chr3 23898946 23898947 - RIREX_LTR 8828 0.0010 (3/2998) 0 * Os_TE_465859 Os_TE_465859 Chr3 23898942 23898941 + RIREX_LTR 8828 0.0010 (3/2994) 0 * Os_TE_465860 Os_TE_465843 Chr3 23892956 23892957 - SC-3_LTR 5748 0.0027 (8/2982) 0 * Os_TE_465842 Os_TE_465842 Chr3 23892952 23892951 + ORSiTERTOOT00296 5553 0.0027 (8/2984) 0 * Os_TE_465843 Os_TE_465839 Chr3 23888612 23888611 - ORSiTERTOOT00067 756 0.5685 (1630/2867) 0 * * Os_TE_465830 Chr3 23887854 23887855 + SZ-55_LTR 10318 0.0003 (1/2961) 0 * * Os_TE_465821 Chr3 23885554 23885555 + MPING 430 0.0027 (8/2980) 0 * Os_TE_465820 Os_TE_465820 Chr3 23885552 23885551 - MPING 430 0.0027 (8/2985) 0 * Os_TE_465821 Os_TE_465750 Chr3 23869988 23869987 - COPI2_LTR 4733 0.0007 (2/2969) 0 * * Os_TE_465738 Chr3 23869160 23869161 - ECR 394 0.0015 (2/1379) 0 * * Os_TE_465737 Chr3 23868897 23868898 + COPIA2-LTR_OS 6433 0.0003 (1/2968) 0 * * Os_TE_465680 Chr3 23841379 23841380 - COPIA2-LTR_OS 6433 0.2534 (754/2976) 0 * Os_TE_465679 Os_TE_465679 Chr3 23841375 23841374 + COPIA2-LTR_OS 6433 0.2494 (738/2959) 0 * Os_TE_465680 Os_TE_465678 Chr3 23840843 23840844 + COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_465677 Os_TE_465677 Chr3 23840839 23840838 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_465678 Os_TE_465668 Chr3 23834325 23834326 + RETROSAT2LTRA 3112 0.0079 (23/2926) 0 * * Os_TE_465659 Chr3 23832642 23832641 + RIREX_LTR 8828 0.0003 (1/2885) 0 * * Os_TE_465645 Chr3 23828060 23828061 - HATOS1 3488 0.0074 (22/2986) 0 * Os_TE_465644 Os_TE_465644 Chr3 23828053 23828052 + QINNIU 528 0.0074 (22/2981) 0 * Os_TE_465645 Os_TE_465617 Chr3 23815154 23815155 + ORSiTERTOOT00296 5553 0.0003 (1/2991) 0 * Os_TE_465616 Os_TE_465616 Chr3 23815150 23815149 - SC-3_LTR 5748 0.0003 (1/2989) 0 * Os_TE_465617 Os_TE_465614 Chr3 23812327 23812326 + ORSgTEMT00901178 234 0.6777 (2010/2966) 0 * * Os_TE_465593 Chr3 23809146 23809147 - RETROSAT3_LTR 11537 0.0003 (1/2977) 0 * * Os_TE_465591 Chr3 23807680 23807681 - SINE16_OS 116 0.0010 (3/2995) 0 * * Os_TE_465585 Chr3 23802070 23802071 + ORSiTERTOOT00296 5553 0.0003 (1/2976) 0 * * Os_TE_465559 Chr3 23787384 23787385 - RETROSAT2LTR 12796 0.5288 (1572/2973) 0 * * Os_TE_465556 Chr3 23787284 23787285 - RIRE3_LTR 12054 0.4953 (1473/2974) 0 * * Os_TE_465543 Chr3 23782363 23782364 - COPIA2-LTR_OS 6433 0.0003 (1/2969) 0 * * Os_TE_465540 Chr3 23779552 23779553 - COPI2_LTR 4733 0.0003 (1/2967) 0 * * Os_TE_465538 Chr3 23779126 23762373 - EnSpm-14_OS 11216 0.3406 (1009/2962) 1 Intact Os_TE_465534 Os_TE_465534 Chr3 23762373 23779126 + EnSpm-14_OS 11216 0.3338 (985/2951) 1 Intact Os_TE_465538 Os_TE_465483 Chr3 23753470 23753469 - COPI2_LTR 4733 0.0568 (166/2921) 0 * * Os_TE_465469 Chr3 23746341 23746340 + ORSgTEMT03400012 238 0.0010 (3/2976) 0 * * Os_TE_465466 Chr3 23744232 23744231 - ORSgTEMT01701253 161 0.0007 (2/2987) 0 * * Os_TE_465374 Chr3 23701864 23701865 - ORSiTEMT01000007 186 0.6201 (1732/2793) 0 * * Os_TE_465360 Chr3 23698990 23698989 + ORSiTERTOOT00226 792 0.0003 (1/2999) 0 * * Os_TE_465350 Chr3 23693877 23693876 + TRUNCATOR 2918 0.5881 (1743/2964) 0 * Os_TE_465349 Os_TE_465349 Chr3 23693876 23693877 - TRUNCATOR 2918 0.5811 (1706/2936) 0 * Os_TE_465350 Os_TE_465330 Chr3 23688936 23688935 + RETRO2_LTR 12874 0.0650 (192/2956) 0 * * Os_TE_465327 Chr3 23688559 23688560 + RIREX_LTR 8828 0.0088 (25/2831) 0 * * Os_TE_465303 Chr3 23685767 23685768 - COPIA2-LTR_OS 6433 0.0003 (1/2984) 0 * Os_TE_465302 Os_TE_465302 Chr3 23685763 23685762 + COPIA2-LTR_OS 6433 0.0003 (1/2982) 0 * Os_TE_465303 Os_TE_465261 Chr3 23671426 23671427 + STOWAWAY51_OS 246 0.0440 (125/2840) 0 * * Os_TE_465259 Chr3 23670119 23670118 - ORSgTEMT02600002 356 0.0014 (4/2949) 0 * * Os_TE_465250 Chr3 23668733 23668734 - MPING 430 0.0003 (1/2991) 0 * * Os_TE_465248 Chr3 23668708 23668707 + ORSgTEMT01601591 242 0.0003 (1/2993) 0 * * Os_TE_465214 Chr3 23654053 23654054 + INDITTO 263 0.6954 (2055/2955) 0 * Os_TE_465213 Os_TE_465213 Chr3 23654051 23654050 - INDITTO 263 0.6883 (1992/2894) 0 * Os_TE_465214 Os_TE_465205 Chr3 23646885 23646884 + DS-RICE3N 525 0.0052 (15/2890) 0 * * Os_TE_465189 Chr3 23640136 23640135 + ECSR 154 0.0017 (5/2879) 0 * * Os_TE_465183 Chr3 23635931 23635932 + DS-RICE4N 715 0.0060 (18/2984) 0 * * Os_TE_465167 Chr3 23630380 23630381 + OSTE18 129 0.0003 (1/2992) 0 * * Os_TE_465136 Chr3 23608731 23608730 - TRUNCATOR 2918 0.0537 (160/2981) 0 * Os_TE_465135 Os_TE_465135 Chr3 23608730 23608731 + TRUNCATOR 2918 0.0526 (157/2983) 0 * Os_TE_465136 Os_TE_465076 Chr3 23590622 23590621 + SEVERIN-2 1952 0.0018 (5/2753) 0 * * Os_TE_465046 Chr3 23570929 23570930 - INDITTO 263 0.0677 (201/2969) 0 * Os_TE_465045 Os_TE_465045 Chr3 23570927 23570926 + INDITTO 263 0.0690 (205/2972) 0 * Os_TE_465046 Os_TE_465016 Chr3 23562056 23562057 - SC-8_LTR 4951 0.0003 (1/2990) 0 * Os_TE_465015 Os_TE_465015 Chr3 23562052 23562051 + SC-8_LTR 4951 0.0003 (1/2993) 0 * Os_TE_465016 Os_TE_465013 Chr3 23560255 23560256 + ORSiTERTOOT00296 5553 0.0003 (1/2990) 0 * Os_TE_465012 Os_TE_465012 Chr3 23560251 23560250 - SC-3_LTR 5748 0.0003 (1/2987) 0 * Os_TE_465013 Os_TE_464989 Chr3 23549888 23549887 - TRUNCATOR 2918 0.0007 (2/2834) 0 * Os_TE_464988 Os_TE_464988 Chr3 23549887 23549888 + TRUNCATOR 2918 0.0007 (2/2839) 0 * Os_TE_464989 Os_TE_464966 Chr3 23537308 23537309 - TRUNCATOR2_LTR 2904 0.0007 (2/2996) 0 * Os_TE_464965 Os_TE_464965 Chr3 23537304 23537303 + ORSiCMCM00100019 2717 0.0007 (2/2996) 0 * Os_TE_464966 Os_TE_464928 Chr3 23524367 23524368 - ORSiTERTOOT00333 4719 0.0003 (1/2992) 0 * Os_TE_464927 Os_TE_464927 Chr3 23524364 23524363 + ORSiTERTOOT00333 4719 0.0003 (1/2990) 0 * Os_TE_464928 Os_TE_464906 Chr3 23515758 23515759 - ORSgTEMT01602413 239 0.0044 (13/2977) 0 * * Os_TE_464899 Chr3 23512805 23512806 - RIREX_LTR 8828 0.0007 (2/2981) 0 * Os_TE_464898 Os_TE_464898 Chr3 23512801 23512800 + RIREX_LTR 8828 0.0007 (2/2973) 0 * Os_TE_464899 Os_TE_464897 Chr3 23511772 23511773 - ORSgTEMT01400029 213 0.0040 (12/2989) 0 * * Os_TE_464878 Chr3 23506460 23506459 + STOWAWAY46_OS 154 0.0064 (18/2820) 0 * * Os_TE_464862 Chr3 23501512 23501513 - COPI2_LTR 4733 0.0003 (1/2970) 0 * * Os_TE_464850 Chr3 23496270 23496271 - ORSgTETNOOT00323 125 0.0057 (17/2989) 0 * * Os_TE_464838 Chr3 23491086 23491087 - COPIA2-LTR_OS 6433 0.0007 (2/2984) 0 * * Os_TE_464837 Chr3 23491085 23491084 + ORSgTEMT01601591 242 0.0050 (15/2991) 0 * * Os_TE_464819 Chr3 23483125 23483126 + NDNA1TNA_OS 334 0.0110 (32/2922) 0 * Os_TE_464818 Os_TE_464818 Chr3 23483123 23483122 - NDNA1TNA_OS 334 0.0110 (32/2922) 0 * Os_TE_464819 Os_TE_464790 Chr3 23462159 23462160 - TRUNCATOR2_LTR 2904 0.0087 (26/2993) 0 * Os_TE_464789 Os_TE_464789 Chr3 23462155 23462154 + ORSiTERTOOT00028 8600 0.0084 (25/2991) 0 * Os_TE_464790 Os_TE_464734 Chr3 23439708 23439707 - SC-3_LTR 5748 0.0015 (1/679) 0 * * Os_TE_464704 Chr3 23421871 23421872 - RETROSAT3_LTR 11537 0.0003 (1/2953) 0 * * Os_TE_464697 Chr3 23420809 23420808 + NDNA1TNA_OS 334 0.6731 (1892/2811) 0 * * Os_TE_464694 Chr3 23420721 23420722 - ORSgTEMT00101341 314 0.6074 (1781/2932) 0 * Os_TE_464693 Os_TE_464693 Chr3 23420720 23420719 + NDNA1TNA_OS 334 0.6120 (1811/2959) 0 * Os_TE_464694 Os_TE_464691 Chr3 23419142 23419141 + ORSgTETNOOT00908 242 0.0652 (191/2931) 0 * * Os_TE_464676 Chr3 23413836 23413837 + COPIA2-LTR_OS 6433 0.0003 (1/2968) 0 * * Os_TE_464643 Chr3 23397088 23397089 - SZ-67LTR 1540 0.0020 (6/2980) 0 * * Os_TE_464629 Chr3 23390475 23390476 - COPIA2-LTR_OS 6433 0.0030 (9/2988) 0 * Os_TE_464628 Os_TE_464628 Chr3 23390471 23390470 + COPIA2-LTR_OS 6433 0.0027 (8/2989) 0 * Os_TE_464629 Os_TE_464626 Chr3 23390120 23390119 + RIREX_LTR 8828 0.0147 (44/2993) 0 * * Os_TE_464602 Chr3 23367535 23367534 - AMYLTP 383 0.0003 (1/2969) 0 * * Os_TE_464598 Chr3 23367126 23366519 - JOUZHENA 607 0.2941 (811/2758) 1 Intact Os_TE_464597 Os_TE_464597 Chr3 23366519 23367126 + JOUZHENA 607 0.3017 (832/2758) 1 Intact Os_TE_464598 Os_TE_464482 Chr3 23295927 23295926 + TRUNCATOR 2918 0.5247 (1551/2956) 0 * * Os_TE_464453 Chr3 23285595 23285594 + MuDR3_OS 8604 0.0004 (1/2592) 0 * * Os_TE_464444 Chr3 23279010 23279011 - MuDR3_OS 8604 0.5972 (1678/2810) 0 * Os_TE_464443 Os_TE_464443 Chr3 23279001 23279000 + MuDR3_OS 8604 0.5908 (1637/2771) 0 * Os_TE_464444 Os_TE_464423 Chr3 23254766 23260462 + ORSiCMCM00100017 5674 0.3237 (933/2882) 1 Intact * Os_TE_464370 Chr3 23238752 23238751 + RIRE3_LTR 12054 0.3383 (615/1818) 0 * * Os_TE_464340 Chr3 23227414 23227415 - RIRE3A_LTR 10580 0.0003 (1/2869) 0 * * Os_TE_464315 Chr3 23220829 23220830 + TWIF 586 0.0011 (1/907) -1 * * Os_TE_464115 Chr3 23138587 23138588 - SC-3_LTR 5748 0.0003 (1/2990) 0 * Os_TE_464114 Os_TE_464114 Chr3 23138583 23138582 + ORSiTERTOOT00296 5553 0.0003 (1/2990) 0 * Os_TE_464115 Os_TE_464112 Chr3 23136414 23136415 + SINE1OS 127 0.5162 (1546/2995) 0 * * Os_TE_464052 Chr3 23108141 23108142 + RIREX_LTR 8828 0.0004 (1/2818) 0 * * Os_TE_464051 Chr3 23108072 23108073 - COPIA2-LTR_OS 6433 0.0003 (1/2900) 0 * Os_TE_464050 Os_TE_464050 Chr3 23108068 23108067 + COPIA2-LTR_OS 6433 0.0003 (1/2895) 0 * Os_TE_464051 Os_TE_463974 Chr3 23069972 23069973 - COPI2_LTR 4733 0.0003 (1/2992) 0 * Os_TE_463973 Os_TE_463973 Chr3 23069968 23069967 + COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_463974 Os_TE_463955 Chr3 23058939 23058938 - RETROSAT2LTR 12796 0.5851 (1526/2608) 0 * * Os_TE_463945 Chr3 23056356 23056355 - AMYLTP 383 0.0004 (1/2607) 0 * * Os_TE_463916 Chr3 23037841 23037842 + ORSiTERTOOT00226 792 0.0003 (1/2993) 0 * * Os_TE_463903 Chr3 23032776 23032775 + HARB-1_OS 5166 0.0017 (5/2969) 0 * * Os_TE_463860 Chr3 23021165 23021164 - TRUNCATOR 2918 0.6542 (1939/2964) 0 * Os_TE_463859 Os_TE_463859 Chr3 23021164 23021165 + TRUNCATOR 2918 0.6638 (1988/2995) 0 * Os_TE_463860 Os_TE_463853 Chr3 23016127 23016128 + ORSgTEMT00700017 386 0.0017 (5/2957) 0 * Os_TE_463852 Os_TE_463852 Chr3 23016126 23016125 + MUDRN5_OS 374 0.0017 (5/2961) 0 * Os_TE_463853 Os_TE_463851 Chr3 23016071 23016072 + RIREX_LTR 8828 0.0054 (16/2978) 0 * Os_TE_463850 Os_TE_463850 Chr3 23016067 23016066 - RIREX_LTR 8828 0.0054 (16/2974) 0 * Os_TE_463851 Os_TE_463783 Chr3 23001745 23001746 - ORSgTEMT02000041 194 0.6379 (1866/2925) 0 * * Os_TE_463727 Chr3 22982086 22982087 + COPI2_LTR 4733 0.0003 (1/2987) 0 * Os_TE_463726 Os_TE_463726 Chr3 22982082 22982081 - COPI2_LTR 4733 0.0003 (1/2988) 0 * Os_TE_463727 Os_TE_463725 Chr3 22981811 22981810 + ORSiTEMT01000008 242 0.0662 (196/2962) 0 * * Os_TE_463682 Chr3 22961097 22961098 - ORSiTERTOOT00103 3065 0.5679 (1677/2953) 0 * * Os_TE_463666 Chr3 22957303 22957304 + GYPSY-A_LTR 8951 0.5703 (1683/2951) 0 * Os_TE_463665 Os_TE_463665 Chr3 22957300 22957299 - SZ-40LTR 2465 0.5738 (1694/2952) 0 * Os_TE_463666 Os_TE_463590 Chr3 22930354 22930355 - SZ-4_LTR 5991 0.0003 (1/2943) 0 * Os_TE_463589 Os_TE_463589 Chr3 22930350 22930349 + SZ-4_LTR 5991 0.0003 (1/2938) 0 * Os_TE_463590 Os_TE_463581 Chr3 22928284 22928285 + MuDR4_OS 7610 0.0003 (1/2951) 0 * Os_TE_463580 Os_TE_463580 Chr3 22928277 22928276 - MuDR4_OS 7610 0.0003 (1/2959) 0 * Os_TE_463581 Os_TE_463562 Chr3 22919987 22919988 + SPMLIKE 10989 0.0003 (1/2981) 0 * Os_TE_463561 Os_TE_463561 Chr3 22919985 22919984 - SPMLIKE 10989 0.0003 (1/2980) 0 * Os_TE_463562 Os_TE_463560 Chr3 22919787 22919786 + SPMLIKE 10989 0.6783 (1997/2944) 0 * * Os_TE_463479 Chr3 22888641 22888640 + OSTE33 1012 0.5435 (1468/2701) 0 * * Os_TE_463470 Chr3 22886870 22886869 - MPING 430 0.0003 (1/2950) 0 * * Os_TE_463464 Chr3 22884841 22884840 + INDITTO 263 0.0007 (2/2969) 0 * * Os_TE_463440 Chr3 22877377 22877376 - ORSgTEMT02000041 194 0.1168 (323/2765) 0 * * Os_TE_463431 Chr3 22870078 22870077 - TRUNCATOR 2918 0.0014 (4/2775) 0 * Os_TE_463430 Os_TE_463430 Chr3 22870077 22870078 + TRUNCATOR 2918 0.0018 (5/2805) 0 * Os_TE_463431 Os_TE_463387 Chr3 22861418 22861419 + MERMITE18B 1306 0.0066 (15/2278) 0 * * Os_TE_463382 Chr3 22858248 22858247 + ORSgTEMT01700299 212 0.0057 (17/2990) 0 * Os_TE_463381 Os_TE_463381 Chr3 22858245 22858246 - ORSgTEMT01701254 154 0.0057 (17/2992) 0 * Os_TE_463382 Os_TE_463380 Chr3 22854006 22854007 - AMYLTP 383 0.0643 (192/2985) 0 * Os_TE_463379 Os_TE_463379 Chr3 22853998 22853997 + AMYLTP 383 0.0637 (190/2983) 0 * Os_TE_463380 Os_TE_463378 Chr3 22853587 22853588 + COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_463377 Os_TE_463377 Chr3 22853583 22853582 - COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_463378 Os_TE_463366 Chr3 22849898 22850037 - ORSgTEMT00501447 126 0.3322 (971/2923) 1 Intact * Os_TE_463364 Chr3 22849843 22849700 - ORSgTEMT00501255 146 0.4323 (977/2260) 1 Intact Os_TE_463362 Os_TE_463362 Chr3 22849698 22849842 + GAIJIN 147 0.3237 (966/2984) 1 Intact Os_TE_463364 Os_TE_463352 Chr3 22845370 22845371 - ORSgTEMT01701858 154 0.0010 (2/2056) 0 * * Os_TE_463323 Chr3 22833347 22833348 + MUDRN5_OS 374 0.0003 (1/2887) 0 * * Os_TE_463320 Chr3 22830863 22830862 + ORSgTEMT00900079 241 0.6878 (2058/2992) 0 * * Os_TE_463316 Chr3 22825320 22825180 + ORSgTEMT00500934 143 0.3232 (966/2989) 1 Intact Os_TE_463315 Os_TE_463315 Chr3 22825177 22825316 + ORSgTEMT00502094 140 0.3245 (969/2986) 1 Intact Os_TE_463316 Os_TE_463310 Chr3 22820683 22820684 - MuDR-N6_OS 836 0.6437 (1716/2666) 0 * * Os_TE_463306 Chr3 22818978 22818979 + RIRE5-LTR_OS 6427 0.6848 (2042/2982) 0 * Os_TE_463305 Os_TE_463305 Chr3 22818974 22818973 - SZ-14LTR 1193 0.6863 (2054/2993) 0 * Os_TE_463306 Os_TE_463304 Chr3 22817952 22817953 + STOWAWAY44_OS 240 0.0003 (1/2997) 0 * * Os_TE_463303 Chr3 22817375 22817376 - RIREX_LTR 8828 0.0003 (1/2990) 0 * Os_TE_463302 Os_TE_463302 Chr3 22817371 22817370 + RIREX_LTR 8828 0.0003 (1/2989) 0 * Os_TE_463303 Os_TE_463301 Chr3 22816782 22816781 - COPIA2-LTR_OS 6433 0.0010 (1/1007) 0 * * Os_TE_463291 Chr3 22812850 22812851 - RIREX_LTR 8828 0.0058 (17/2918) 0 * Os_TE_463290 Os_TE_463290 Chr3 22812846 22812845 + RIREX_LTR 8828 0.0055 (16/2915) 0 * Os_TE_463291 Os_TE_463276 Chr3 22807242 22807241 - F770 284 0.0057 (17/2983) 0 * * Os_TE_463275 Chr3 22806954 22806953 - ORSgTETN00200001 10994 0.4679 (1312/2804) 0 * Os_TE_463274 Os_TE_463274 Chr3 22806953 22806954 + CACTA-B 1103 0.5024 (1484/2954) 0 * Os_TE_463275 Os_TE_463259 Chr3 22798012 22798011 - HELITRON2_OS 15167 0.0057 (17/2990) 0 * * Os_TE_463242 Chr3 22792480 22792481 + HARB-1_OS 5166 0.0013 (3/2342) -1 * Os_TE_463241 Os_TE_463241 Chr3 22792478 22792477 - HARB-1_OS 5166 0.0013 (3/2304) -1 * Os_TE_463242 Os_TE_463227 Chr3 22785243 22785244 + STOWAWAY51_OS 246 0.0057 (17/2978) 0 * * Os_TE_463226 Chr3 22784982 22784983 + RIREX_LTR 8828 0.0057 (17/2973) 0 * Os_TE_463225 Os_TE_463225 Chr3 22784978 22784977 - RIREX_LTR 8828 0.0050 (15/2973) 0 * Os_TE_463226 Os_TE_463224 Chr3 22784767 22784768 + ENSPM6_OS 9815 0.5986 (1697/2835) 0 * * Os_TE_463220 Chr3 22784179 22784180 + INDITTO 263 0.0055 (16/2897) 0 * * Os_TE_463200 Chr3 22780167 22780168 - ORSgTETNOOT01930 140 0.0060 (18/2980) 0 * Os_TE_463199 Os_TE_463199 Chr3 22780165 22780164 + ORSgTETNOOT01930 140 0.0057 (17/2984) 0 * Os_TE_463200 Os_TE_463196 Chr3 22779683 22779682 - SZ-7A_LTR 11400 0.0057 (17/2964) 0 * * Os_TE_463195 Chr3 22777415 22777414 + TRUNCATOR 2918 0.0017 (5/2921) 0 * Os_TE_463194 Os_TE_463194 Chr3 22777414 22777415 - TRUNCATOR 2918 0.0011 (3/2719) 0 * Os_TE_463195 Os_TE_463177 Chr3 22764102 22764101 + STOWAWAY47_OS 148 0.0145 (17/1172) 0 * * Os_TE_463171 Chr3 22763420 22763421 + TAMI2 254 0.2000 (2/10) -1 * * Os_TE_463168 Chr3 22762844 22762843 + ORSgTEMT00500498 155 0.0005 (1/1841) 0 * * Os_TE_463166 Chr3 22762039 22762038 - ORSgTEMT02600002 356 0.0049 (14/2861) 0 * Os_TE_463165 Os_TE_463165 Chr3 22762036 22762037 - ORSgTEMT00101174 225 0.0056 (16/2876) 0 * Os_TE_463166 Os_TE_463143 Chr3 22751179 22751178 - ORSgTEMT00502237 143 0.0055 (16/2931) 0 * * Os_TE_463132 Chr3 22739064 22738772 + ORSgTEMT04300005 293 0.4594 (1200/2612) 1 Intact * Os_TE_463129 Chr3 22736991 22736992 + COPIA2-LTR_OS 6433 0.0006 (1/1743) 0 * Os_TE_463128 Os_TE_463128 Chr3 22736987 22736986 - COPIA2-LTR_OS 6433 0.0042 (9/2134) 0 * Os_TE_463129 Os_TE_463127 Chr3 22736629 22736628 + TYPEU4 402 0.6179 (1827/2957) 0 * * Os_TE_463125 Chr3 22735003 22723695 - RIRE2_LTR 11306 0.4049 (1154/2850) 1 Intact * Os_TE_463103 Chr3 22723512 22723511 - ORSgTEMT01602413 239 0.5471 (1395/2550) 0 * Os_TE_463102 Os_TE_463102 Chr3 22723509 22723510 - ORSgTEMT01602413 239 0.6086 (1793/2946) 0 * Os_TE_463103 Os_TE_463100 Chr3 22723293 22723294 + ORSgTEMT00600192 355 0.6051 (1707/2821) 0 * Os_TE_463099 Os_TE_463099 Chr3 22723290 22723289 - ORSgTEMT00600524 364 0.6240 (1834/2939) 0 * Os_TE_463100 Os_TE_463098 Chr3 22723286 22723287 + CASTAWAY 364 0.6085 (1727/2838) 0 * * Os_TE_463096 Chr3 22721123 22719112 + MERMITEA 1710 0.6644 (1192/1794) 1 Intact * Os_TE_463089 Chr3 22717170 22717171 + ORSiTERTOOT00332 5395 0.0017 (3/1794) 0 * * Os_TE_463082 Chr3 22711800 22711799 - SC-3_LTR 5748 0.0003 (1/2991) 0 * * Os_TE_463080 Chr3 22708165 22708164 - DITAILA 257 0.0033 (4/1199) 0 * Os_TE_463079 Os_TE_463079 Chr3 22708161 22708162 + DITAILA 257 0.0017 (5/2961) 0 * Os_TE_463080 Os_TE_463076 Chr3 22706957 22707193 + ORSgTEMT01601122 212 0.3895 (1163/2986) 1 Intact * Os_TE_463016 Chr3 22689798 22689799 + GYPSY-A_LTR 8951 0.0427 (126/2953) 0 * * Os_TE_463004 Chr3 22687619 22687620 + COPIA2-LTR_OS 6433 0.0003 (1/2933) 0 * Os_TE_463003 Os_TE_463003 Chr3 22687615 22687614 - COPIA2-LTR_OS 6433 0.0003 (1/2933) 0 * Os_TE_463004 Os_TE_462997 Chr3 22686748 22686749 - SZ-22_LTR 4403 0.0003 (1/2984) 0 * Os_TE_462996 Os_TE_462996 Chr3 22686744 22686743 + ORSiTERTOOT00034 791 0.0003 (1/2986) 0 * Os_TE_462997 Os_TE_462965 Chr3 22679812 22679813 - COPIA2-LTR_OS 6433 0.0003 (1/2980) 0 * * Os_TE_462950 Chr3 22675713 22675714 + ORSiTERTOOT00004 4000 0.0003 (1/2973) 0 * * Os_TE_462922 Chr3 22652710 22656287 + GYPSY-A_LTR 8951 0.3237 (944/2916) 1 Solo_LTR * Os_TE_462902 Chr3 22641252 22641253 + CRM-LTR_OS 7749 0.2241 (660/2945) 0 * Os_TE_462901 Os_TE_462901 Chr3 22641248 22641247 - CRM-LTR_OS 7749 0.2278 (673/2954) 0 * Os_TE_462902 Os_TE_462865 Chr3 22620449 22620448 + TRUNCATOR 2918 0.0007 (2/2900) 0 * * Os_TE_462861 Chr3 22618377 22618378 - CLOUD 734 0.0003 (1/2953) 0 * * Os_TE_462860 Chr3 22617914 22617915 + OSTONOR1_LTR 6440 0.0074 (22/2993) 0 * Os_TE_462859 Os_TE_462859 Chr3 22617910 22617909 - ORSiTERT00100062 5674 0.0073 (22/2995) 0 * Os_TE_462860 Os_TE_462669 Chr3 22553862 22553861 - TREP219 104 0.0017 (5/2977) 0 * * Os_TE_462651 Chr3 22539209 22539210 + ORSgTEMT01601876 243 0.0004 (1/2643) 0 * * Os_TE_462650 Chr3 22538846 22538845 + ORSgTERT00201346 4268 0.0027 (8/2983) 0 * * Os_TE_462605 Chr3 22531316 22531317 + CASTAWAY 364 0.0530 (157/2965) 0 * Os_TE_462604 Os_TE_462604 Chr3 22531314 22531313 - ORSgTEMT00600085 364 0.0531 (157/2954) 0 * Os_TE_462605 Os_TE_462558 Chr3 22513044 22513045 - RETRO2_LTR 12874 0.0204 (61/2983) 0 * Os_TE_462557 Os_TE_462557 Chr3 22513040 22513039 + ORSgTERTOOT00009 12852 0.0221 (66/2985) 0 * Os_TE_462558 Os_TE_462548 Chr3 22512030 22512031 - ORSiTETNOOT00216 3569 0.0383 (49/1280) 0 * * Os_TE_462534 Chr3 22510326 22510327 - COPIA2-LTR_OS 6433 0.0208 (62/2983) 0 * Os_TE_462533 Os_TE_462533 Chr3 22510322 22510321 + COPIA2-LTR_OS 6433 0.0208 (62/2978) 0 * Os_TE_462534 Os_TE_462527 Chr3 22506264 22506265 + RIREX_LTR 8828 0.0239 (67/2808) 0 * * Os_TE_462523 Chr3 22505312 22496666 + SPMLIKE 10989 0.2857 (838/2933) 1 Intact Os_TE_462518 Os_TE_462518 Chr3 22496665 22505312 - ORSgTETN00200001 10994 0.2791 (810/2902) 1 Intact Os_TE_462523 Os_TE_462508 Chr3 22495824 22495825 - RIREX_LTR 8828 0.0252 (75/2981) 0 * Os_TE_462507 Os_TE_462507 Chr3 22495820 22495819 + RIREX_LTR 8828 0.0252 (75/2981) 0 * Os_TE_462508 Os_TE_462502 Chr3 22493047 22493048 - RETRO1_LTR 8314 0.0498 (141/2832) 0 * * Os_TE_462499 Chr3 22492020 22492021 + EnSpm-13_OS 11171 0.0003 (1/2893) 0 * Os_TE_462498 Os_TE_462498 Chr3 22492018 22492017 - EnSpm-13_OS 11171 0.0003 (1/2887) 0 * Os_TE_462499 Os_TE_462481 Chr3 22488090 22488091 + RIREX_LTR 8828 0.0003 (1/2990) 0 * Os_TE_462480 Os_TE_462480 Chr3 22488086 22488085 - RIREX_LTR 8828 0.0003 (1/2993) 0 * Os_TE_462481 Os_TE_462465 Chr3 22483450 22483451 - RIRE2_LTR 11306 0.0551 (165/2996) 0 * Os_TE_462464 Os_TE_462464 Chr3 22483446 22483445 - ORSgTERT00201216 11284 0.0537 (161/2997) 0 * Os_TE_462465 Os_TE_462463 Chr3 22483356 22483357 + ORSiTERTOOT00034 791 0.0003 (1/2999) 0 * Os_TE_462462 Os_TE_462462 Chr3 22483352 22483351 - SZ-22_LTR 4403 0.0003 (1/2998) 0 * Os_TE_462463 Os_TE_462452 Chr3 22479334 22479333 + SPMLIKE 10989 0.0058 (17/2906) 0 * * Os_TE_462434 Chr3 22464638 22464639 - ORSgTEMT00901709 212 0.0003 (1/2974) 0 * * Os_TE_462349 Chr3 22425494 22425495 - SZ-62LTR 3649 0.0496 (138/2783) 0 * Os_TE_462348 Os_TE_462348 Chr3 22425490 22425489 + SZ-62LTR 3649 0.0483 (131/2713) 0 * Os_TE_462349 Os_TE_462345 Chr3 22424398 22424399 - CRM-LTR_OS 7749 0.0003 (1/2999) 0 * * Os_TE_462314 Chr3 22407531 22407530 - TRUNCATOR2_LTR 2904 0.0003 (1/2982) 0 * * Os_TE_462289 Chr3 22396759 22396758 - MPING 430 0.0078 (23/2959) 0 * * Os_TE_462265 Chr3 22391954 22391955 + ORSiTERTOOT00226 792 0.0003 (1/2871) 0 * * Os_TE_462258 Chr3 22390552 22390553 + SZ-40LTR 2465 0.0004 (1/2741) 0 * Os_TE_462257 Os_TE_462257 Chr3 22390548 22390547 - GYPSY-A_LTR 8951 0.0003 (1/2987) 0 * Os_TE_462258 Os_TE_462211 Chr3 22371997 22371998 - STOWAWAY9_OS 235 0.0018 (4/2270) 0 * * Os_TE_462210 Chr3 22370987 22370988 - COPIA2-LTR_OS 6433 0.0005 (1/2187) 0 * Os_TE_462209 Os_TE_462209 Chr3 22370983 22370982 + COPIA2-LTR_OS 6433 0.0005 (1/2191) 0 * Os_TE_462210 Os_TE_462208 Chr3 22370823 22370824 + COPIA2-LTR_OS 6433 0.0005 (1/2199) 0 * Os_TE_462207 Os_TE_462207 Chr3 22370819 22370818 - COPIA2-LTR_OS 6433 0.0005 (1/2198) 0 * Os_TE_462208 Os_TE_462206 Chr3 22370335 22370334 + RIREX_LTR 8828 0.0005 (1/2198) 0 * * Os_TE_462205 Chr3 22369408 22369407 + ORSgTEMT01602141 239 0.3620 (788/2177) 0 * Os_TE_462204 Os_TE_462204 Chr3 22369402 22369403 + ORSgTEMT01602250 243 0.3571 (775/2170) 0 * Os_TE_462205 Os_TE_462132 Chr3 22355380 22355379 + ORSgTETNOOT01219 231 0.0953 (273/2865) 0 * * Os_TE_462090 Chr3 22340720 22340721 + OSTE33 1012 0.0525 (156/2972) 0 * Os_TE_462089 Os_TE_462089 Chr3 22340711 22340710 + OSTE33 1012 0.0505 (150/2970) 0 * Os_TE_462090 Os_TE_462086 Chr3 22339944 22339945 + MPING 430 0.0007 (2/2990) 0 * Os_TE_462085 Os_TE_462085 Chr3 22339942 22339941 - MPING 430 0.0007 (2/2993) 0 * Os_TE_462086 Os_TE_462080 Chr3 22336217 22336218 - ORSgTEMT00600085 364 0.0533 (156/2926) 0 * Os_TE_462079 Os_TE_462079 Chr3 22336215 22336214 + ORSgTEMT00600502 360 0.0546 (162/2965) 0 * Os_TE_462080 Os_TE_462068 Chr3 22331348 22331349 + DS-RICE4N 715 0.0259 (77/2977) 0 * Os_TE_462067 Os_TE_462067 Chr3 22331341 22331340 - DS-RICE2N 613 0.0255 (76/2975) 0 * Os_TE_462068 Os_TE_462029 Chr3 22309347 22309348 + RIREX_LTR 8828 0.0020 (5/2546) 0 * * Os_TE_462020 Chr3 22304173 22304174 + ORSiCMCM00100019 2717 0.0074 (22/2979) 0 * * Os_TE_462014 Chr3 22300135 22300134 - COPIA2-LTR_OS 6433 0.0004 (1/2800) 0 * * Os_TE_461976 Chr3 22281206 22281207 - SZ-63_LTR 9602 0.6985 (2023/2896) 0 * Os_TE_461975 Os_TE_461975 Chr3 22281202 22281201 + SZ-63_LTR 9602 0.6912 (1988/2876) 0 * Os_TE_461976 Os_TE_461972 Chr3 22280689 22280690 + MERMITEH 1307 0.0003 (1/2918) 0 * * Os_TE_461965 Chr3 22278629 22278630 + CASGRANDA 465 0.1642 (489/2978) 0 * * Os_TE_461964 Chr3 22278557 22278558 - ORSgTEMT00400010 151 0.6860 (2043/2978) 0 * * Os_TE_461955 Chr3 22277512 22277513 + AMYLTP 383 0.2127 (594/2793) 0 * Os_TE_461954 Os_TE_461954 Chr3 22277504 22277503 - AMYLTP 383 0.2201 (621/2821) 0 * Os_TE_461955 Os_TE_461919 Chr3 22271944 22271943 + LINE-3 10975 0.0007 (2/2865) 0 * * Os_TE_461883 Chr3 22254786 22254787 + DASIA-2 1198 0.0292 (87/2982) 0 * Os_TE_461882 Os_TE_461882 Chr3 22254778 22254777 + DASIA-2 1198 0.0311 (93/2986) 0 * Os_TE_461883 Os_TE_461836 Chr3 22229879 22229880 - ORSgTETNOOT00754 253 0.0007 (2/2990) 0 * Os_TE_461835 Os_TE_461835 Chr3 22229875 22229874 + ORSgTETNOOT01686 252 0.0007 (2/2989) 0 * Os_TE_461836 Os_TE_461818 Chr3 22223811 22223812 - ORSiTERTOOT00047 484 0.0003 (1/2981) 0 * * Os_TE_461813 Chr3 22219275 22219276 - STOWAWAY50_OS 174 0.0003 (1/2886) 0 * * Os_TE_461803 Chr3 22218469 22218470 - AMYLTP 383 0.6507 (1928/2963) 0 * Os_TE_461802 Os_TE_461802 Chr3 22218461 22218460 + AMYLTP 383 0.6192 (1704/2752) 0 * Os_TE_461803 Os_TE_461783 Chr3 22214001 22214002 + COPIA2-LTR_OS 6433 0.0010 (3/2998) 0 * Os_TE_461782 Os_TE_461782 Chr3 22213997 22213996 - COPIA2-LTR_OS 6433 0.0010 (3/2999) 0 * Os_TE_461783 Os_TE_461769 Chr3 22208298 22208299 - SZ-55_LTR 10318 0.0003 (1/2988) 0 * Os_TE_461768 Os_TE_461768 Chr3 22208294 22208293 + SZ-55_LTR 10318 0.0003 (1/2990) 0 * Os_TE_461769 Os_TE_461767 Chr3 22207666 22207667 + COPI2_LTR 4733 0.0545 (163/2989) 0 * Os_TE_461766 Os_TE_461766 Chr3 22207662 22207661 - COPI2_LTR 4733 0.0529 (158/2988) 0 * Os_TE_461767 Os_TE_461765 Chr3 22207073 22207074 + SZ-55_LTR 10318 0.0013 (4/2993) 0 * Os_TE_461764 Os_TE_461764 Chr3 22207069 22207068 - SZ-55_LTR 10318 0.0013 (4/2991) 0 * Os_TE_461765 Os_TE_461763 Chr3 22206296 22206297 + TRUNCATOR 2918 0.1130 (338/2992) 0 * Os_TE_461762 Os_TE_461762 Chr3 22206290 22206289 - ORSiTERT00200154 9386 0.1111 (332/2987) 0 * Os_TE_461763 Os_TE_461761 Chr3 22204776 22204777 + TWIFBIG 3567 0.0228 (68/2981) 0 * Os_TE_461760 Os_TE_461760 Chr3 22204769 22204768 - ORSiTETNOOT00216 3569 0.0238 (71/2984) 0 * Os_TE_461761 Os_TE_461759 Chr3 22204646 22204309 + ORSgTEMT00100272 356 0.8620 (2568/2979) 1 Intact Os_TE_461756 Os_TE_461756 Chr3 22204309 22204644 + ORSgTEMT00101341 314 0.8621 (2576/2988) 1 Intact Os_TE_461759 Os_TE_461753 Chr3 22202654 22202655 + GYPSY-A_LTR 8951 0.1161 (347/2988) 0 * * Os_TE_461751 Chr3 22202511 22202512 - RETROSAT3_LTR 11537 0.0017 (5/2992) 0 * Os_TE_461750 Os_TE_461750 Chr3 22202507 22202506 + RETROSAT2LTRA 3112 0.0017 (5/2994) 0 * Os_TE_461751 Os_TE_461749 Chr3 22202380 22202379 - TRUNCATOR 2918 0.5528 (1653/2990) 0 * Os_TE_461748 Os_TE_461748 Chr3 22202375 22202376 + TRUNCATOR 2918 0.5545 (1658/2990) 0 * Os_TE_461749 Os_TE_461746 Chr3 22199805 22199806 - RIRE2_LTR 11306 0.0033 (10/2991) 0 * Os_TE_461745 Os_TE_461745 Chr3 22199801 22199800 + RIRE2_LTR 11306 0.0037 (11/2995) 0 * Os_TE_461746 Os_TE_461744 Chr3 22198578 22186111 - RETRO2_LTR 12874 0.2694 (801/2973) 1 Intact Os_TE_461725 Os_TE_461725 Chr3 22186111 22198057 + RETRO2_LTR 12874 0.2640 (780/2954) 1 Intact Os_TE_461744 Os_TE_461719 Chr3 22180799 22180798 + TRUNCATOR 2918 0.0807 (241/2987) 0 * Os_TE_461718 Os_TE_461718 Chr3 22180798 22180799 - TRUNCATOR 2918 0.0790 (236/2987) 0 * Os_TE_461719 Os_TE_461693 Chr3 22173885 22173886 - RIRE3A_LTR 10580 0.0027 (4/1461) 0 * * Os_TE_461685 Chr3 22171177 22171176 + RIRE2_LTR 11306 0.0031 (9/2916) 0 * * Os_TE_461679 Chr3 22164524 22164525 - RETRO1_LTR 8314 0.0258 (75/2907) 0 * * Os_TE_461674 Chr3 22164112 22164113 - RIRE2_LTR 11306 0.0027 (8/2993) 0 * Os_TE_461673 Os_TE_461673 Chr3 22164108 22164107 - ORSgTERT00201216 11284 0.0027 (8/2993) 0 * Os_TE_461674 Os_TE_461665 Chr3 22161588 22161589 + TNR8-1 418 0.0017 (5/2983) 0 * * Os_TE_461663 Chr3 22160013 22160014 + ORSgTETNOOT00908 242 0.0632 (188/2974) 0 * * Os_TE_461638 Chr3 22151600 22151601 - MERMITE18C 1473 0.0007 (2/2992) 0 * * Os_TE_461549 Chr3 22107269 22107268 - SZ-35LTR 3853 0.1043 (312/2991) 0 * * Os_TE_461541 Chr3 22102378 22102379 - ORSiTEMT01300001 950 0.0003 (1/2994) 0 * * Os_TE_461499 Chr3 22094073 22094074 - COPI2_LTR 4733 0.0073 (22/2995) 0 * * Os_TE_461496 Chr3 22093598 22093599 + RIREX_LTR 8828 0.0253 (76/2999) 0 * Os_TE_461495 Os_TE_461495 Chr3 22093594 22093593 - RIREX_LTR 8828 0.0257 (77/2999) 0 * Os_TE_461496 Os_TE_461492 Chr3 22091623 22091624 - EnSpm-10_OS 11265 0.0030 (9/2971) 0 * * Os_TE_461476 Chr3 22086144 22086143 - STOWAWAY51_OS 246 0.0003 (1/2912) 0 * Os_TE_461475 Os_TE_461475 Chr3 22086138 22086139 + STOWAWAY51_OS 246 0.0003 (1/2988) 0 * Os_TE_461476 Os_TE_461459 Chr3 22078329 22078330 - SZ-9LTR 965 0.7074 (2120/2997) 0 * Os_TE_461458 Os_TE_461458 Chr3 22078325 22078324 + RIRE5-LTR_OS 6427 0.6913 (2020/2922) 0 * Os_TE_461459 Os_TE_461456 Chr3 22078110 22078111 - RIREX_LTR 8828 0.0020 (6/2997) 0 * Os_TE_461455 Os_TE_461455 Chr3 22078106 22078105 + RIREX_LTR 8828 0.0020 (6/2997) 0 * Os_TE_461456 Os_TE_461451 Chr3 22075532 22075533 - COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * Os_TE_461450 Os_TE_461450 Chr3 22075528 22075527 + COPIA2-LTR_OS 6433 0.0003 (1/2981) 0 * Os_TE_461451 Os_TE_461445 Chr3 22072337 22072338 - TYPEM 227 0.0030 (9/2976) 0 * Os_TE_461444 Os_TE_461444 Chr3 22072336 22072335 - ORSgTEMT02400179 221 0.0030 (9/2987) 0 * Os_TE_461445 Os_TE_461443 Chr3 22072297 22072296 + SEVERIN-2 1952 0.0519 (155/2987) 0 * * Os_TE_461405 Chr3 22050658 22050657 + STOWAWAY11_OS 292 0.0007 (2/2879) 0 * * Os_TE_461398 Chr3 22047719 22047720 + JOUZHEN 596 0.0020 (6/2958) 0 * * Os_TE_461397 Chr3 22047395 22047396 - ORSiTERT00200154 9386 0.0283 (84/2963) 0 * Os_TE_461396 Os_TE_461396 Chr3 22047389 22047388 + TRUNCATOR 2918 0.0312 (93/2979) 0 * Os_TE_461397 Os_TE_461386 Chr3 22044823 22044824 + SZ-62LTR 3649 0.4728 (1297/2743) 0 * Os_TE_461385 Os_TE_461385 Chr3 22044819 22044818 - SZ-62LTR 3649 0.4918 (1380/2806) 0 * Os_TE_461386 Os_TE_461372 Chr3 22040773 22040772 - TRUNCATOR 2918 0.0470 (140/2976) 0 * * Os_TE_461318 Chr3 22022572 22022573 + ORSgTEMT01602051 240 0.0003 (1/2979) 0 * * Os_TE_461315 Chr3 22018634 22018633 - ORSgTEMT01602413 239 0.0003 (1/2950) 0 * * Os_TE_461309 Chr3 22016967 22016968 + HARB-1_OS 5166 0.0030 (9/2991) 0 * Os_TE_461308 Os_TE_461308 Chr3 22016965 22016964 - HARB-1_OS 5166 0.0030 (9/2995) 0 * Os_TE_461309 Os_TE_461307 Chr3 22016931 22016930 + STOWAWAY51_OS 246 0.0003 (1/2991) 0 * Os_TE_461306 Os_TE_461306 Chr3 22016925 22016926 - STOWAWAY51_OS 246 0.0003 (1/2987) 0 * Os_TE_461307 Os_TE_461301 Chr3 22014256 22014257 + TELIA 141 0.0003 (1/2991) 0 * Os_TE_461300 Os_TE_461300 Chr3 22014248 22014247 - TELIA 141 0.0003 (1/2990) 0 * Os_TE_461301 Os_TE_461293 Chr3 22010157 22010158 + COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_461292 Os_TE_461292 Chr3 22010153 22010152 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_461293 Os_TE_461288 Chr3 22009596 22009595 - MuDR3_OS 8604 0.0010 (3/2981) 0 * * Os_TE_461261 Chr3 22002357 22001786 - HATOS1 3488 0.2672 (797/2983) 1 Intact Os_TE_461260 Os_TE_461260 Chr3 22001786 22002356 + QINNIU 528 0.2689 (804/2990) 1 Intact Os_TE_461261 Os_TE_461238 Chr3 21993972 21993973 + RIRE3_LTR 12054 0.0055 (16/2924) 0 * Os_TE_461237 Os_TE_461237 Chr3 21993968 21993967 - RIRE3_LTR 12054 0.0054 (16/2947) 0 * Os_TE_461238 Os_TE_461187 Chr3 21961908 21961907 - SZ-62LTR 3649 0.1776 (529/2979) 0 * * Os_TE_461182 Chr3 21959872 21959873 - TRUNCATOR2_LTR 2904 0.0317 (95/2996) 0 * Os_TE_461181 Os_TE_461181 Chr3 21959868 21959867 + TRUNCATOR2_LTR 2904 0.0297 (89/2994) 0 * Os_TE_461182 Os_TE_461170 Chr3 21953159 21953160 + SZ-62LTR 3649 0.0262 (78/2975) 0 * * Os_TE_461078 Chr3 21910096 21910097 - F524 291 0.0008 (2/2507) 0 * * Os_TE_461041 Chr3 21886838 21890006 + ORSiTERTOOT00027 10853 0.2601 (767/2949) 1 Intact * Os_TE_461002 Chr3 21866238 21866237 + DASIA-2 1198 0.0551 (87/1580) 0 * * Os_TE_460993 Chr3 21861361 21861360 - RIREX_LTR 8828 0.0615 (94/1529) 0 * * Os_TE_460906 Chr3 21821532 21821533 - RIREX_LTR 8828 0.0058 (6/1027) 0 * Os_TE_460905 Os_TE_460905 Chr3 21821528 21821527 + RIREX_LTR 8828 0.0058 (6/1032) 0 * Os_TE_460906 Os_TE_460900 Chr3 21818626 21818625 - MIDWAY 985 0.0028 (5/1799) 0 * * Os_TE_460898 Chr3 21818392 21818391 + ORSgTEMT01702111 154 0.4833 (870/1800) 0 * Os_TE_460897 Os_TE_460897 Chr3 21818389 21818390 - ORSgTEMT01700794 153 0.4748 (847/1784) 0 * Os_TE_460898 Os_TE_460895 Chr3 21817312 21817311 - ORSiTERT00100080 6173 0.0021 (5/2408) 0 * * Os_TE_460820 Chr3 21789127 21789128 + COPI2_LTR 4733 0.0003 (1/2995) 0 * * Os_TE_460781 Chr3 21771080 21771081 - RIREX_LTR 8828 0.0275 (82/2977) 0 * Os_TE_460780 Os_TE_460780 Chr3 21771076 21771075 + RIREX_LTR 8828 0.0283 (84/2967) 0 * Os_TE_460781 Os_TE_460763 Chr3 21766917 21766918 + SZ-67LTR 1540 0.0021 (6/2905) 0 * * Os_TE_460738 Chr3 21752919 21752918 + ORSiCMCM00100019 2717 0.4036 (1185/2936) 0 * * Os_TE_460713 Chr3 21743924 21743923 + ORSiTERTOOT00226 792 0.0003 (1/2993) 0 * * Os_TE_460712 Chr3 21743567 21743568 - RETROSAT2LTR 12796 0.0277 (83/2997) 0 * * Os_TE_460691 Chr3 21732524 21732525 + TWIF 586 0.0003 (1/2950) 0 * * Os_TE_460681 Chr3 21730232 21730233 - RIREX_LTR 8828 0.0007 (2/2985) 0 * Os_TE_460680 Os_TE_460680 Chr3 21730228 21730227 + RIREX_LTR 8828 0.0007 (2/2976) 0 * Os_TE_460681 Os_TE_460672 Chr3 21723958 21723957 + TRUNCATOR 2918 0.1363 (374/2744) 0 * * Os_TE_460616 Chr3 21708784 21708783 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * * Os_TE_460600 Chr3 21701770 21701771 + SC-4_LTR 5218 0.0010 (3/2993) 0 * Os_TE_460599 Os_TE_460599 Chr3 21701766 21701765 - SC-4_LTR 5218 0.0010 (3/2994) 0 * Os_TE_460600 Os_TE_460577 Chr3 21685504 21685503 + TWIF 586 0.0004 (1/2667) 0 * * Os_TE_460562 Chr3 21667406 21667407 + SC-8_LTR 4951 0.0003 (1/2981) 0 * Os_TE_460561 Os_TE_460561 Chr3 21667402 21667401 - SC-8_LTR 4951 0.0003 (1/2977) 0 * Os_TE_460562 Os_TE_460555 Chr3 21664805 21664470 + ORSgTEMT00101341 314 0.3051 (875/2868) 1 Intact Os_TE_460554 Os_TE_460554 Chr3 21664469 21664804 + ORSgTEMT00100531 325 0.3061 (878/2868) 1 Intact Os_TE_460555 Os_TE_460552 Chr3 21664079 21664078 - ORSgTEMT02400246 177 0.1266 (375/2961) 0 * Os_TE_460551 Os_TE_460551 Chr3 21664075 21664076 - ORSgTEMT02400092 225 0.1278 (380/2973) 0 * Os_TE_460552 Os_TE_460532 Chr3 21661039 21661040 - ORSgTEMT00600085 364 0.4752 (1330/2799) 0 * Os_TE_460531 Os_TE_460531 Chr3 21661037 21661036 + CASTAWAY 364 0.4781 (1405/2939) 0 * Os_TE_460532 Os_TE_460524 Chr3 21653516 21653517 + ORSiTERTOOT00296 5553 0.0007 (2/2971) 0 * Os_TE_460523 Os_TE_460523 Chr3 21653512 21653511 - SC-3_LTR 5748 0.0007 (2/2973) 0 * Os_TE_460524 Os_TE_460485 Chr3 21622444 21622445 + ORSgTETNOOT00908 242 0.0003 (1/2991) 0 * * Os_TE_460484 Chr3 21621603 21621604 - ORSgTEMT00600085 364 0.0054 (16/2987) 0 * Os_TE_460483 Os_TE_460483 Chr3 21621601 21621600 + ORSgTEMT00600502 360 0.0053 (16/2991) 0 * Os_TE_460484 Os_TE_460416 Chr3 21599241 21599242 - COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_460415 Os_TE_460415 Chr3 21599237 21599236 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_460416 Os_TE_460401 Chr3 21597329 21596093 + CACTA-H 1152 0.2792 (711/2547) 1 Intact * Os_TE_460399 Chr3 21596034 21596035 + ORSgTEMT01400018 210 0.6552 (1505/2297) 0 * * Os_TE_460380 Chr3 21590380 21590379 - EnSpm-13_OS 11171 0.0003 (1/2935) 0 * * Os_TE_460376 Chr3 21588650 21588651 + RETRO2_LTR 12874 0.0308 (90/2925) 0 * * Os_TE_460374 Chr3 21588418 21588419 + AMYLTP 383 0.3576 (1057/2956) 0 * Os_TE_460373 Os_TE_460373 Chr3 21588410 21588409 - AMYLTP 383 0.3548 (1047/2951) 0 * Os_TE_460374 Os_TE_460372 Chr3 21588056 21588057 + ORSgTETNOOT00908 242 0.0323 (96/2974) 0 * Os_TE_460371 Os_TE_460371 Chr3 21588048 21588047 + ORSgTETNOOT01219 231 0.0277 (82/2957) 0 * Os_TE_460372 Os_TE_460313 Chr3 21562511 21562512 + ORSiTEMT01000008 242 0.0034 (10/2954) 0 * * Os_TE_460271 Chr3 21542761 21542762 + SZ-54_LTR 5203 0.0003 (1/2972) 0 * * Os_TE_460176 Chr3 21472616 21472617 - RIREX_LTR 8828 0.0003 (1/2921) 0 * Os_TE_460175 Os_TE_460175 Chr3 21472612 21472611 + RIREX_LTR 8828 0.0003 (1/2919) 0 * Os_TE_460176 Os_TE_460156 Chr3 21468173 21468172 - RIREX_LTR 8828 0.0003 (1/2979) 0 * * Os_TE_460139 Chr3 21457256 21457257 + OSTE33 1012 0.3668 (1085/2958) 0 * Os_TE_460138 Os_TE_460138 Chr3 21457248 21457247 + OSTE33 1012 0.3777 (1130/2992) 0 * Os_TE_460139 Os_TE_460137 Chr3 21457210 21457211 + DS-RICE2N 613 0.0052 (15/2892) 0 * Os_TE_460136 Os_TE_460136 Chr3 21457203 21457202 - DS-RICE2N 613 0.0056 (16/2858) 0 * Os_TE_460137 Os_TE_460133 Chr3 21456669 21456668 + RETRO2_LTR 12874 0.0054 (16/2986) 0 * * Os_TE_460126 Chr3 21453149 21453150 + TYPEH 309 0.7087 (2051/2894) 0 * * Os_TE_460119 Chr3 21452525 21452524 - TRUNCATOR 2918 0.0216 (61/2826) 0 * Os_TE_460118 Os_TE_460118 Chr3 21452524 21452525 + TRUNCATOR 2918 0.0261 (77/2955) 0 * Os_TE_460119 Os_TE_460114 Chr3 21451394 21451393 - COPI2_LTR 4733 0.0558 (165/2957) 0 * * Os_TE_460073 Chr3 21438788 21438787 - TRUNCATOR 2918 0.2532 (757/2990) 0 * * Os_TE_460041 Chr3 21430431 21430432 - TRUNCATOR2_LTR 2904 0.0003 (1/2996) 0 * * Os_TE_460037 Chr3 21426729 21426730 + ORSiTETN00100011 676 0.0261 (78/2991) 0 * Os_TE_460035 Os_TE_460035 Chr3 21426716 21426715 + DS-RICE4N 715 0.0257 (77/2994) 0 * Os_TE_460037 Os_TE_460027 Chr3 21423160 21423161 + CASGRANDA 465 0.0287 (86/2992) 0 * * Os_TE_460000 Chr3 21411932 21411931 - MPING 430 0.0003 (1/2972) 0 * * Os_TE_459997 Chr3 21408792 21396057 + RETRO2_LTR 12874 0.3289 (979/2977) 1 Intact * Os_TE_459967 Chr3 21390474 21390475 - ORSgTEMT00501255 146 0.0003 (1/2973) 0 * * Os_TE_459966 Chr3 21390393 21384256 - MDR2 6967 0.3235 (955/2952) 1 Intact Os_TE_459963 Os_TE_459963 Chr3 21384256 21390388 + MDR2 6967 0.3309 (986/2980) 1 Intact Os_TE_459966 Os_TE_459934 Chr3 21374255 21374256 + ORSiTERTOOT00296 5553 0.0003 (1/2988) 0 * Os_TE_459933 Os_TE_459933 Chr3 21374251 21374250 - SC-3_LTR 5748 0.0003 (1/2989) 0 * Os_TE_459934 Os_TE_459899 Chr3 21360549 21360120 + MPING 430 0.0138 (41/2972) 1 Intact * Os_TE_459869 Chr3 21353009 21353010 - ORSiTETNOOT00134 607 0.0004 (1/2815) 0 * Os_TE_459868 Os_TE_459868 Chr3 21353002 21353001 + TWIF 586 0.0004 (1/2811) 0 * Os_TE_459869 Os_TE_459857 Chr3 21350170 21350169 + ORSgTETNOOT00908 242 0.0003 (1/2984) 0 * * Os_TE_459847 Chr3 21349415 21349414 - SZ-44LTR 1408 0.0013 (4/2994) 0 * * Os_TE_459764 Chr3 21316481 21316482 - ORSgTEMT01601696 238 0.0017 (5/2967) 0 * * Os_TE_459759 Chr3 21315829 21315830 + ORSgTEMT00501279 126 0.0013 (4/2988) 0 * Os_TE_459758 Os_TE_459758 Chr3 21315827 21315826 - ORSgTEMT00500520 147 0.0013 (4/2991) 0 * Os_TE_459759 Os_TE_459757 Chr3 21313800 21313801 + SPMLIKE 10989 0.0224 (67/2991) 0 * Os_TE_459756 Os_TE_459756 Chr3 21313798 21313797 - ORSgTETN00200001 10994 0.0217 (65/2990) 0 * Os_TE_459757 Os_TE_459722 Chr3 21298196 21298195 - ORSgTEMT01702216 170 0.0014 (4/2905) 0 * Os_TE_459721 Os_TE_459721 Chr3 21298193 21298194 + ORSgTEMT01701491 162 0.0017 (5/2923) 0 * Os_TE_459722 Os_TE_459720 Chr3 21298064 21298065 + ORSgTEMT01701145 147 0.0010 (3/2893) 0 * * Os_TE_459705 Chr3 21292906 21289774 + RETROSAT2LTR 12796 0.2797 (815/2914) 1 Solo_LTR Os_TE_459700 Os_TE_459700 Chr3 21289772 21292906 - RETROSAT2LTR 12796 0.3053 (911/2984) 1 Solo_LTR Os_TE_459705 Os_TE_459688 Chr3 21285920 21285921 - RIRE2_LTR 11306 0.0034 (10/2969) 0 * * Os_TE_459685 Chr3 21285415 21285416 - COPIA2-LTR_OS 6433 0.0010 (3/2975) 0 * Os_TE_459684 Os_TE_459684 Chr3 21285411 21285410 + COPIA2-LTR_OS 6433 0.0010 (3/2976) 0 * Os_TE_459685 Os_TE_459677 Chr3 21281506 21281507 + ORSgTETNOOT00221 261 0.6977 (2001/2868) 0 * * Os_TE_459674 Chr3 21280655 21280656 - ORSgTEMT02900151 307 0.1041 (117/1124) 0 * * Os_TE_459662 Chr3 21275234 21273580 - CLOUD-7 495 0.3256 (967/2970) 1 Intact Os_TE_459660 Os_TE_459660 Chr3 21273580 21275234 - CLOUD-7 495 0.3332 (996/2989) 1 Intact Os_TE_459662 Os_TE_459659 Chr3 21273524 21273523 + ORSgTEMT05000092 279 0.0017 (5/2971) 0 * Os_TE_459658 Os_TE_459658 Chr3 21273512 21273513 - SUSU 279 0.0017 (5/2986) 0 * Os_TE_459659 Os_TE_459575 Chr3 21239937 21239938 - AMYLTP 383 0.0013 (4/2994) 0 * Os_TE_459574 Os_TE_459574 Chr3 21239929 21239928 + AMYLTP 383 0.0013 (4/2994) 0 * Os_TE_459575 Os_TE_459543 Chr3 21222785 21222786 - DS-RICE2N 613 0.6502 (1775/2730) 0 * Os_TE_459542 Os_TE_459542 Chr3 21222778 21222777 + DS-RICE2N 613 0.6801 (2011/2957) 0 * Os_TE_459543 Os_TE_459538 Chr3 21221719 21221718 + RPO_OS 1983 0.6756 (2010/2975) 0 * Os_TE_459537 Os_TE_459537 Chr3 21221718 21221719 - RPO_OS 1983 0.6777 (2021/2982) 0 * Os_TE_459538 Os_TE_459532 Chr3 21218150 21218151 - GYPSY-A_LTR 8951 0.0546 (162/2966) 0 * Os_TE_459531 Os_TE_459531 Chr3 21218146 21218145 + GYPSY-A_LTR 8951 0.0539 (160/2967) 0 * Os_TE_459532 Os_TE_459521 Chr3 21209392 21209393 + GYPSY-A_LTR 8951 0.0308 (92/2987) 0 * Os_TE_459520 Os_TE_459520 Chr3 21209388 21209387 - SZ-40LTR 2465 0.0291 (87/2993) 0 * Os_TE_459521 Os_TE_459497 Chr3 21198922 21198921 + COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * * Os_TE_459483 Chr3 21193184 21193185 + RIREX_LTR 8828 0.0331 (92/2783) 0 * Os_TE_459482 Os_TE_459482 Chr3 21193180 21193179 - RIREX_LTR 8828 0.0330 (92/2789) 0 * Os_TE_459483 Os_TE_459456 Chr3 21188298 21188299 + ORSgTEMT02400014 229 0.0660 (197/2987) 0 * * Os_TE_459424 Chr3 21177541 21177542 - RETROSAT2LTR 12796 0.0003 (1/2998) 0 * * Os_TE_459408 Chr3 21173406 21173407 + TRUNCATOR2_LTR 2904 0.0017 (5/2984) 0 * * Os_TE_459381 Chr3 21162897 21162898 - AMYLTP 383 0.0033 (10/2989) 0 * Os_TE_459380 Os_TE_459380 Chr3 21162889 21162888 + AMYLTP 383 0.0034 (10/2985) 0 * Os_TE_459381 Os_TE_459348 Chr3 21151427 21151428 - ORSgTEMT02200001 208 0.0003 (1/2914) 0 * * Os_TE_459338 Chr3 21150128 21150127 - STOWAWAY51_OS 246 0.0003 (1/2968) 0 * Os_TE_459337 Os_TE_459337 Chr3 21150125 21150126 - STOWAWAY51_OS 246 0.0003 (1/2963) 0 * Os_TE_459338 Os_TE_459336 Chr3 21149930 21149931 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_459335 Os_TE_459335 Chr3 21149926 21149925 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_459336 Os_TE_459259 Chr3 21121679 21121680 + ORSgTETNOOT00908 242 0.0020 (6/2959) 0 * Os_TE_459258 Os_TE_459258 Chr3 21121672 21121671 + ORSgTETNOOT01219 231 0.0020 (6/2958) 0 * Os_TE_459259 Os_TE_459243 Chr3 21116866 21116865 + RETROSAT2LTR 12796 0.0004 (1/2673) 0 * * Os_TE_459190 Chr3 21085159 21085158 + AMYLTP 383 0.0499 (148/2965) 0 * * Os_TE_459177 Chr3 21078239 21078238 + TWIFB1 3737 0.0003 (1/2932) 0 * * Os_TE_459171 Chr3 21076074 21076075 - OSTE33 1012 0.0007 (2/2876) 0 * * Os_TE_459144 Chr3 21068837 21068838 - SNAP-OL3 189 0.0007 (2/2877) 0 * * Os_TE_459140 Chr3 21067415 21067416 + AMYLTP 383 0.0486 (144/2962) 0 * * Os_TE_459137 Chr3 21065519 21065518 - ORSgTEMT01602539 240 0.0616 (184/2989) 0 * Os_TE_459136 Os_TE_459136 Chr3 21065518 21065519 - ORSgTEMT01600902 239 0.0606 (181/2988) 0 * Os_TE_459137 Os_TE_459129 Chr3 21063191 21063190 + ORSgTEMT01601591 242 0.0104 (31/2976) 0 * Os_TE_459128 Os_TE_459128 Chr3 21063185 21063186 + STOWAWAY51_OS 246 0.0114 (32/2814) 0 * Os_TE_459129 Os_TE_459127 Chr3 21063164 21063163 - ORSgTEMT01601493 303 0.2126 (629/2958) 0 * * Os_TE_459111 Chr3 21051810 21051809 - MuDR4_OS 7610 0.0074 (22/2992) 0 * * Os_TE_459078 Chr3 21041389 21041388 + ORSgTEMT00900079 241 0.0003 (1/2971) 0 * * Os_TE_459076 Chr3 21041082 21041314 - ORSgTEMT01600650 234 0.3259 (966/2964) 1 Intact * Os_TE_459059 Chr3 21038449 21038448 - SZ-22_LTR 4403 0.0005 (1/2106) 0 * * Os_TE_459027 Chr3 21031629 21031628 + ORSgTETNOOT01219 231 0.0003 (1/2965) 0 * * Os_TE_459024 Chr3 21030818 21030819 - RIRE3_LTR 12054 0.0003 (1/2994) 0 * Os_TE_459023 Os_TE_459023 Chr3 21030814 21030813 - RIRE3_LTR 12054 0.0003 (1/2995) 0 * Os_TE_459024 Os_TE_459021 Chr3 21030022 21030023 + TWIFB1 3737 0.0003 (1/2969) 0 * * Os_TE_459014 Chr3 21027382 21027381 - RETROSAT2LTR 12796 0.0003 (1/2929) 0 * * Os_TE_459012 Chr3 21027001 21026572 - MPING 430 0.0067 (20/2975) 1 Intact Os_TE_459011 Os_TE_459011 Chr3 21026572 21027001 + MPING 430 0.0067 (20/2980) 1 Intact Os_TE_459012 Os_TE_459010 Chr3 21026215 21025980 + ORSgTETNOOT00908 242 0.3330 (988/2967) 1 Intact * Os_TE_458945 Chr3 21006346 21006347 - ORSgTEMT00600304 361 0.0017 (5/2983) 0 * Os_TE_458944 Os_TE_458944 Chr3 21006343 21006342 - CASTAWAY 364 0.0017 (5/2969) 0 * Os_TE_458945 Os_TE_458915 Chr3 20996244 20996243 + TRUNCATOR2_LTR 2904 0.7795 (1382/1773) 0 * * Os_TE_458908 Chr3 20994698 20994697 - INDITTO 263 0.0017 (5/2974) 0 * * Os_TE_458907 Chr3 20994340 20993979 + ORSgTEMT00600576 351 0.3343 (995/2976) 1 Intact Os_TE_458906 Os_TE_458906 Chr3 20993978 20994337 + ORSgTEMT00600272 361 0.3305 (983/2974) 1 Intact Os_TE_458907 Os_TE_458894 Chr3 20989147 20989148 - RETROSAT2LTRA 3112 0.0073 (22/2995) 0 * * Os_TE_458872 Chr3 20982107 20982106 - ORMOSIA 482 0.6844 (1945/2842) 0 * * Os_TE_458857 Chr3 20970974 20970973 + CRM-LTR_OS 7749 0.0007 (2/2930) 0 * * Os_TE_458827 Chr3 20948661 20948662 + OSTE33 1012 0.0551 (165/2993) 0 * Os_TE_458826 Os_TE_458826 Chr3 20948652 20948651 + OSTE33 1012 0.0532 (159/2988) 0 * Os_TE_458827 Os_TE_458823 Chr3 20946293 20946294 + AMYLTP 383 0.4221 (1255/2973) 0 * * Os_TE_458803 Chr3 20938700 20938701 + COPIA2-LTR_OS 6433 0.0004 (1/2594) 0 * Os_TE_458802 Os_TE_458802 Chr3 20938696 20938695 - COPIA2-LTR_OS 6433 0.0008 (2/2595) 0 * Os_TE_458803 Os_TE_458780 Chr3 20918057 20918058 - SZ-9LTR 965 0.0017 (5/2926) 0 * Os_TE_458779 Os_TE_458779 Chr3 20918053 20918052 + SZ-9LTR 965 0.0017 (5/2927) 0 * Os_TE_458780 Os_TE_458778 Chr3 20917943 20917944 + SPMLIKE 10989 0.0621 (183/2947) 0 * * Os_TE_458759 Chr3 20910975 20910976 - MuDR3_OS 8604 0.0003 (1/2972) 0 * Os_TE_458758 Os_TE_458758 Chr3 20910967 20910966 + MuDR3_OS 8604 0.0003 (1/2973) 0 * Os_TE_458759 Os_TE_458723 Chr3 20898126 20898127 + SZ-35LTR 3853 0.1783 (530/2972) 0 * Os_TE_458722 Os_TE_458722 Chr3 20898122 20898121 - RETROSAT4_LTR 13504 0.1876 (561/2990) 0 * Os_TE_458723 Os_TE_458704 Chr3 20885871 20885870 - RIRE2_LTR 11306 0.0007 (2/2996) 0 * * Os_TE_458692 Chr3 20883355 20879897 + SZ-9LTR 965 0.2866 (856/2987) 1 Intact Os_TE_458689 Os_TE_458689 Chr3 20879897 20880861 - SZ-9LTR 965 0.2868 (857/2988) 1 Intact Os_TE_458692 Os_TE_458677 Chr3 20872994 20872995 - ORSgTETNOOT00591 258 0.0007 (2/2973) 0 * * Os_TE_458649 Chr3 20855551 20855552 - TRUNCATOR2_LTR 2904 0.5872 (1751/2982) 0 * Os_TE_458648 Os_TE_458648 Chr3 20855547 20855546 + TRUNCATOR2_LTR 2904 0.5737 (1689/2944) 0 * Os_TE_458649 Os_TE_458634 Chr3 20846011 20846012 - SC-3_LTR 5748 0.0003 (1/2996) 0 * Os_TE_458633 Os_TE_458633 Chr3 20846007 20846006 + ORSiTERTOOT00296 5553 0.0003 (1/2998) 0 * Os_TE_458634 Os_TE_458563 Chr3 20819453 20818195 - CACTA-J 1159 0.2877 (783/2722) 1 Intact * Os_TE_458552 Chr3 20816398 20816399 - COPIA2-LTR_OS 6433 0.0003 (1/2972) 0 * * Os_TE_458500 Chr3 20795933 20795932 - SEVERIN-2 1952 0.7157 (2112/2951) 0 * * Os_TE_458447 Chr3 20784354 20784178 + ORSgTEMT00100693 201 0.6509 (1016/1561) 1 Intact * Os_TE_458439 Chr3 20783186 20783185 - RIRE2_LTR 11306 0.0018 (5/2752) 0 * * Os_TE_458432 Chr3 20782763 20782762 - F804 170 0.0003 (1/2898) 0 * * Os_TE_458405 Chr3 20772609 20772610 + SPMLIKE 10989 0.0014 (4/2849) 0 * Os_TE_458404 Os_TE_458404 Chr3 20772607 20772606 - CACTA-M 1129 0.0021 (6/2854) 0 * Os_TE_458405 Os_TE_458364 Chr3 20752067 20752066 - RIRE2_LTR 11306 0.0050 (15/2985) 0 * * Os_TE_458361 Chr3 20749444 20749445 - RIREX_LTR 8828 0.0003 (1/2922) 0 * Os_TE_458360 Os_TE_458360 Chr3 20749440 20749439 + RIREX_LTR 8828 0.0003 (1/2911) 0 * Os_TE_458361 Os_TE_458310 Chr3 20726719 20726720 + COPI2_LTR 4733 0.0003 (1/2969) 0 * Os_TE_458309 Os_TE_458309 Chr3 20726715 20726714 - COPI2_LTR 4733 0.0003 (1/2965) 0 * Os_TE_458310 Os_TE_458298 Chr3 20715908 20715909 + ORSiTERTOOT00226 792 0.0007 (1/1383) -1 * Os_TE_458297 Os_TE_458297 Chr3 20715904 20715903 + ORSiTERTOOT00226 792 0.0006 (1/1719) 0 * Os_TE_458298 Os_TE_458253 Chr3 20708602 20708601 - TRUNCATOR2_LTR 2904 0.0017 (5/2985) 0 * * Os_TE_458128 Chr3 20666858 20666857 - COPIA2-LTR_OS 6433 0.0003 (1/2982) 0 * * Os_TE_458113 Chr3 20661207 20661206 - ORSgTEMT00600484 344 0.0017 (5/2919) 0 * * Os_TE_458107 Chr3 20653296 20653297 + ORSiTERTOOT00296 5553 0.0007 (2/2993) 0 * Os_TE_458106 Os_TE_458106 Chr3 20653292 20653291 - SC-3_LTR 5748 0.0007 (2/2993) 0 * Os_TE_458107 Os_TE_458104 Chr3 20651226 20651227 + COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_458103 Os_TE_458103 Chr3 20651222 20651221 - COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_458104 Os_TE_458098 Chr3 20649462 20649461 - MDR2 6967 0.0030 (9/2993) 0 * * Os_TE_458007 Chr3 20617767 20617768 + RIRE3A_LTR 10580 0.0003 (1/2899) 0 * * Os_TE_457978 Chr3 20614915 20614916 + ORSgTETNOOT00908 242 0.1414 (406/2871) 0 * * Os_TE_457969 Chr3 20613444 20613443 + TRUNCATOR 2918 0.0508 (142/2797) 0 * Os_TE_457968 Os_TE_457968 Chr3 20613443 20613444 - TRUNCATOR 2918 0.0474 (132/2787) 0 * Os_TE_457969 Os_TE_457963 Chr3 20609438 20612600 + ORSiTERTOOT00027 10853 0.2827 (831/2940) 1 Intact * Os_TE_457885 Chr3 20588496 20588495 + ORSiTERTOOT00296 5553 0.7242 (2164/2988) 0 * * Os_TE_457882 Chr3 20587702 20587703 - SZ-31LTR 1470 0.0017 (5/2983) 0.25 * * Os_TE_457856 Chr3 20581962 20581963 - RIREX_LTR 8828 0.0003 (1/2922) 0 * Os_TE_457855 Os_TE_457855 Chr3 20581958 20581957 + RIREX_LTR 8828 0.0003 (1/2912) 0 * Os_TE_457856 Os_TE_457852 Chr3 20581058 20581059 - COPI2_LTR 4733 0.0007 (2/2982) 0 * Os_TE_457851 Os_TE_457851 Chr3 20581054 20581053 + COPI2_LTR 4733 0.0007 (2/2983) 0 * Os_TE_457852 Os_TE_457850 Chr3 20580550 20580551 - INDITTO 263 0.0633 (186/2939) 0 * * Os_TE_457848 Chr3 20580482 20580481 + ORSgTEMT00101674 340 0.0072 (15/2095) 0 * Os_TE_457847 Os_TE_457847 Chr3 20580481 20580482 + NDNA1TNA_OS 334 0.0053 (15/2806) 0 * Os_TE_457848 Os_TE_457827 Chr3 20568878 20568879 - ORSgTEMT00500956 148 0.0003 (1/2992) 0 * * Os_TE_457824 Chr3 20568632 20568633 - COPI2_LTR 4733 0.0003 (1/2992) 0 * Os_TE_457823 Os_TE_457823 Chr3 20568628 20568627 + COPI2_LTR 4733 0.0003 (1/2993) 0 * Os_TE_457824 Os_TE_457820 Chr3 20566875 20566876 - HATORY 3570 0.1874 (554/2956) 0 * Os_TE_457819 Os_TE_457819 Chr3 20566866 20566865 + HATORY 3570 0.1780 (524/2943) 0 * Os_TE_457820 Os_TE_457804 Chr3 20557658 20557659 + ORSgTETNOOT01834 251 0.0003 (1/2996) 0 * Os_TE_457803 Os_TE_457803 Chr3 20557656 20557655 + ORSgTETNOOT01834 251 0.0003 (1/2997) 0 * Os_TE_457804 Os_TE_457725 Chr3 20520295 20520296 - SZ-40LTR 2465 0.0005 (1/2062) 0 * Os_TE_457724 Os_TE_457724 Chr3 20520291 20520290 + GYPSY-A_LTR 8951 0.0005 (1/2104) 0 * Os_TE_457725 Os_TE_457675 Chr3 20497348 20497347 - TRUNCATOR2_LTR 2904 0.0017 (5/2996) 0 * * Os_TE_457643 Chr3 20478716 20478715 + ORSgTEMT00501601 153 0.0013 (4/2989) 0 * * Os_TE_457642 Chr3 20478424 20478425 - SZ-22_LTR 4403 0.0003 (1/2996) 0 * Os_TE_457641 Os_TE_457641 Chr3 20478420 20478419 + ORSiTERTOOT00226 792 0.0003 (1/2992) 0 * Os_TE_457642 Os_TE_457640 Chr3 20478226 20478225 - ORSgTEMT01600374 210 0.0017 (5/2977) 0 * Os_TE_457639 Os_TE_457639 Chr3 20478223 20478224 - ORSgTEMT01601208 238 0.0017 (5/2982) 0 * Os_TE_457640 Os_TE_457638 Chr3 20477707 20477706 + ORSgTEMT01601591 242 0.0014 (4/2962) 0 * Os_TE_457637 Os_TE_457637 Chr3 20477706 20477707 + TNR11 811 0.0017 (5/2961) 0 * Os_TE_457638 Os_TE_457622 Chr3 20473816 20473815 + ORSiTERTOOT00291 11421 0.0021 (6/2808) 0 * * Os_TE_457553 Chr3 20445219 20445220 + RIREX_LTR 8828 0.0003 (1/2998) 0 * Os_TE_457552 Os_TE_457552 Chr3 20445215 20445214 - RIREX_LTR 8828 0.0003 (1/2997) 0 * Os_TE_457553 Os_TE_457505 Chr3 20427573 20427574 + RETRO2A_LTR 12895 0.0666 (196/2942) 0 * * Os_TE_457467 Chr3 20416990 20416991 - ORSgTETNOOT01607 258 0.0061 (18/2960) 0 * Os_TE_457466 Os_TE_457466 Chr3 20416989 20416988 + ORSgTETNOOT02577 232 0.0054 (16/2948) 0 * Os_TE_457467 Os_TE_457464 Chr3 20415903 20415904 + ORSiTERTOOT00381 4988 0.0003 (1/2964) 0 * * Os_TE_457460 Chr3 20412382 20412381 - SC-3_LTR 5748 0.5457 (1629/2985) 0 * * Os_TE_457448 Chr3 20406447 20406448 + ORSiTERTOOT00296 5553 0.0003 (1/2967) 0 * Os_TE_457447 Os_TE_457447 Chr3 20406443 20406442 - SC-3_LTR 5748 0.0003 (1/2974) 0 * Os_TE_457448 Os_TE_457444 Chr3 20405202 20405203 + ORSiTERTOOT00296 5553 0.0013 (4/2988) 0 * Os_TE_457443 Os_TE_457443 Chr3 20405198 20405197 - SC-3_LTR 5748 0.0013 (4/2988) 0 * Os_TE_457444 Os_TE_457414 Chr3 20387264 20387265 + ORSiTERTOOT00034 791 0.0003 (1/2977) 0 * Os_TE_457413 Os_TE_457413 Chr3 20387260 20387259 - SZ-22_LTR 4403 0.0003 (1/2974) 0 * Os_TE_457414 Os_TE_457400 Chr3 20377781 20377782 + TRUNCATOR 2918 0.0017 (5/2995) 0 * * Os_TE_457355 Chr3 20360082 20360081 - TRUNCATOR2_LTR 2904 0.0646 (192/2970) 0 * * Os_TE_457353 Chr3 20357296 20357297 - ORSiTERT00200154 9386 0.0003 (1/2974) 0 * Os_TE_457352 Os_TE_457352 Chr3 20357290 20357289 - TRUNCATOR2_LTR 2904 0.0003 (1/2974) 0 * Os_TE_457353 Os_TE_457285 Chr3 20328425 20328424 - STOWAWAY12_OS 312 0.0067 (20/2970) 0 * * Os_TE_457279 Chr3 20327004 20327005 - ORSgTETN00200001 10994 0.0338 (101/2985) 0 * Os_TE_457278 Os_TE_457278 Chr3 20327002 20327001 + SPMLIKE 10989 0.0339 (101/2983) 0 * Os_TE_457279 Os_TE_457273 Chr3 20324589 20324588 - ORSgTEMT01400014 209 0.0067 (20/2994) 0 * Os_TE_457272 Os_TE_457272 Chr3 20324586 20324587 - ORSgTEMT01400014 209 0.0063 (19/2997) 0 * Os_TE_457273 Os_TE_457271 Chr3 20323875 20323876 + COPIA2-LTR_OS 6433 0.0064 (19/2965) 0 * Os_TE_457270 Os_TE_457270 Chr3 20323871 20323870 - COPIA2-LTR_OS 6433 0.0067 (20/2966) 0 * Os_TE_457271 Os_TE_457156 Chr3 20272570 20272571 + TRUNCATOR 2918 0.0037 (11/2992) 0 * * Os_TE_457155 Chr3 20272508 20272507 - RETROSAT2LTR 12796 0.0067 (20/2978) 0 * * Os_TE_457149 Chr3 20268919 20267728 + CACTA-B 1103 0.2783 (833/2993) 1 Intact Os_TE_457148 Os_TE_457148 Chr3 20267728 20268916 - CACTA-H 1152 0.2716 (810/2982) 1 Intact Os_TE_457149 Os_TE_457131 Chr3 20264124 20264125 - HARB-1_OS 5166 0.0033 (10/2987) 0 * Os_TE_457130 Os_TE_457130 Chr3 20264122 20264121 + HARB-1_OS 5166 0.0033 (10/2990) 0 * Os_TE_457131 Os_TE_457123 Chr3 20262890 20262891 - SZ-22_LTR 4403 0.0004 (1/2403) -1 * Os_TE_457122 Os_TE_457122 Chr3 20262886 20262885 + ORSiTERTOOT00226 792 0.0005 (1/2040) -1 * Os_TE_457123 Os_TE_457110 Chr3 20255492 20255493 + RIREX_LTR 8828 0.0067 (20/2988) 0 * Os_TE_457109 Os_TE_457109 Chr3 20255488 20255487 - RIREX_LTR 8828 0.0067 (20/2984) 0 * Os_TE_457110 Os_TE_457094 Chr3 20251051 20251052 - RIRE3A_LTR 10580 0.0064 (19/2976) 0 * * Os_TE_457083 Chr3 20247478 20247479 - SC-3_LTR 5748 0.0388 (116/2992) 0 * Os_TE_457082 Os_TE_457082 Chr3 20247474 20247473 + ORSiTERTOOT00296 5553 0.0368 (110/2989) 0 * Os_TE_457083 Os_TE_457072 Chr3 20241563 20241564 - OLO24 345 0.0068 (20/2959) 0 * Os_TE_457071 Os_TE_457071 Chr3 20241561 20241560 + OLO24 345 0.0071 (21/2954) 0 * Os_TE_457072 Os_TE_457065 Chr3 20239789 20239790 - SZ-22_LTR 4403 0.0007 (2/2953) 0 * Os_TE_457064 Os_TE_457064 Chr3 20239785 20239784 + ORSiTERTOOT00226 792 0.0007 (2/2969) 0 * Os_TE_457065 Os_TE_457052 Chr3 20237714 20237713 + RIRE2_LTR 11306 0.0017 (5/2954) 0 * * Os_TE_457036 Chr3 20233300 20233301 + ORSgTEMT00501279 126 0.0004 (1/2664) 0 * * Os_TE_456975 Chr3 20219238 20219239 + SZ-22_LTR 4403 0.0052 (14/2709) 0 * * Os_TE_456970 Chr3 20218222 20218223 + HARB-1_OS 5166 0.0008 (1/1197) -1 * * Os_TE_456867 Chr3 20180959 20180960 + GYPSY1-LTR_OS 8900 0.0064 (19/2964) 0 * * Os_TE_456856 Chr3 20178399 20178398 + GYPSY1-LTR_OS 8900 0.0053 (16/2992) 0 * * Os_TE_456749 Chr3 20139502 20139503 + ORSiTERTOOT00112 4608 0.0053 (15/2846) 0 * Os_TE_456748 Os_TE_456748 Chr3 20139498 20139497 - ORSiTERTOOT00274 4749 0.0053 (15/2849) 0 * Os_TE_456749 Os_TE_456699 Chr3 20127670 20127671 + TRUNCATOR 2918 0.0020 (6/2981) 0 * * Os_TE_456640 Chr3 20104422 20104421 + RIRE3_LTR 12054 0.0013 (4/3000) 0 * * Os_TE_456524 Chr3 20061993 20061994 + ORSiTERTOOT00226 792 0.0003 (1/2992) 0 * * Os_TE_456505 Chr3 20060276 20060275 + ORSgTEMT00900230 250 0.0004 (1/2336) 0 * * Os_TE_456500 Chr3 20058746 20058747 + ORSiTERTOOT00226 792 0.0003 (1/2978) 0 * Os_TE_456499 Os_TE_456499 Chr3 20058742 20058741 - CRM-LTR_OS 7749 0.0003 (1/2974) 0 * Os_TE_456500 Os_TE_456422 Chr3 20035194 20035195 - SZ-22_LTR 4403 0.0017 (5/2957) 0 * Os_TE_456421 Os_TE_456421 Chr3 20035190 20035189 + ORSiTERTOOT00226 792 0.0020 (6/2952) 0 * Os_TE_456422 Os_TE_456420 Chr3 20034633 20034632 - TRUNCATOR 2918 0.0014 (4/2961) 0 * Os_TE_456419 Os_TE_456419 Chr3 20034632 20034633 - TRUNCATOR2_LTR 2904 0.0007 (2/2959) 0 * Os_TE_456420 Os_TE_456408 Chr3 20032821 20032820 + ORSiTERTOOT00226 792 0.0007 (2/2969) 0 * * Os_TE_456251 Chr3 19968574 19968575 + CRM-LTR_OS 7749 0.0004 (1/2847) 0 * * Os_TE_456173 Chr3 19949750 19949751 + TRUNCATOR 2918 0.0039 (11/2842) 0 * * Os_TE_456061 Chr3 19912767 19912766 - SZ-22_LTR 4403 0.0003 (1/2990) 0 * * Os_TE_456045 Chr3 19908023 19908024 + GYPSY1-LTR_OS 8900 0.0050 (15/2981) 0 * * Os_TE_456040 Chr3 19906653 19906652 + RIREX_LTR 8828 0.0065 (19/2927) 0 * * Os_TE_455725 Chr3 19751920 19762859 - RIRE3A_LTR 10580 0.2668 (773/2897) 1 Intact * Os_TE_455678 Chr3 19735101 19735100 + ORSiCMCM00100016 1387 0.0010 (3/2893) 0 * * Os_TE_455677 Chr3 19734079 19734080 + MUJITOS2 4582 0.0014 (4/2909) 0 * Os_TE_455676 Os_TE_455676 Chr3 19734071 19734070 + MUJITOS2 4582 0.0014 (4/2907) 0 * Os_TE_455677 Os_TE_455665 Chr3 19732300 19732301 + ORSiTERTOOT00028 8600 0.0003 (1/2906) 0 * * Os_TE_455663 Chr3 19731044 19731045 + RIREX_LTR 8828 0.0003 (1/2903) 0 * Os_TE_455662 Os_TE_455662 Chr3 19731040 19731039 - RIREX_LTR 8828 0.0003 (1/2905) 0 * Os_TE_455663 Os_TE_455656 Chr3 19726700 19726699 + ORSiTERTOOT00419 7494 0.0014 (4/2907) 0 * * Os_TE_455644 Chr3 19722994 19722995 - GYPSY-A_LTR 8951 0.0020 (5/2449) 0 * * Os_TE_455612 Chr3 19707480 19707479 - SZ-22_LTR 4403 0.0003 (1/2989) 0 * * Os_TE_455591 Chr3 19701013 19701014 + CRM-LTR_OS 7749 0.0003 (1/2925) 0 * Os_TE_455590 Os_TE_455590 Chr3 19701009 19701008 - CRM-LTR_OS 7749 0.0003 (1/2922) 0 * Os_TE_455591 Os_TE_455547 Chr3 19686996 19686995 + TRUNCATOR 2918 0.0489 (145/2968) 0 * * Os_TE_455483 Chr3 19664614 19664613 - RIRE3A_LTR 10580 0.0523 (149/2850) 0 * * Os_TE_455473 Chr3 19659870 19659871 + RIRE3A_LTR 10580 0.0014 (4/2858) 0 * Os_TE_455472 Os_TE_455472 Chr3 19659866 19659865 - RIRE3A_LTR 10580 0.0013 (4/2965) 0 * Os_TE_455473 Os_TE_455471 Chr3 19659603 19659602 + ORSiTERTOOT00226 792 0.0007 (2/2976) 0 * * Os_TE_455470 Chr3 19659499 19659500 + ORSiTERTOOT00226 792 0.0003 (1/2942) 0 * * Os_TE_455469 Chr3 19658679 19658678 + GYPSY1-LTR_OS 8900 0.0064 (19/2952) 0 * * Os_TE_455462 Chr3 19655937 19655938 + ORSiTERTOOT00226 792 0.0003 (1/2965) 0 * * Os_TE_455460 Chr3 19655842 19655843 - SZ-22_LTR 4403 0.0081 (24/2963) 0 * Os_TE_455459 Os_TE_455459 Chr3 19655838 19655837 + ORSiTERTOOT00226 792 0.0081 (24/2961) 0 * Os_TE_455460 Os_TE_455329 Chr3 19614105 19614104 + GYPSY-A_LTR 8951 0.1837 (528/2874) 0 * * Os_TE_455311 Chr3 19608107 19608478 - RIREX_LTR 8828 0.8234 (2461/2989) 1 Solo_LTR * Os_TE_455306 Chr3 19605974 19605973 + CASTAWAY 364 0.0064 (19/2947) 0 * * Os_TE_455305 Chr3 19605513 19605512 + JINHUA 479 0.0067 (20/2977) 0 * * Os_TE_455304 Chr3 19605429 19605430 + RETROSAT2LTR 12796 0.7089 (2004/2827) 0 * Os_TE_455303 Os_TE_455303 Chr3 19605427 19605426 - RETROSAT2LTR 12796 0.7265 (2165/2980) 0 * Os_TE_455304 Os_TE_455300 Chr3 19604960 19604961 - COPIA2-LTR_OS 6433 0.0003 (1/2978) 0 * * Os_TE_455284 Chr3 19597157 19597156 + ORSiTERTOOT00296 5553 0.0017 (5/2989) 0 * * Os_TE_455267 Chr3 19582409 19582410 + CRM-LTR_OS 7749 0.0003 (1/2943) 0 * Os_TE_455266 Os_TE_455266 Chr3 19582405 19582404 - CRM-LTR_OS 7749 0.0003 (1/2953) 0 * Os_TE_455267 Os_TE_455258 Chr3 19581766 19581765 - SZ-22_LTR 4403 0.0003 (1/2938) 0 * * Os_TE_455088 Chr3 19543869 19543870 + ENSPM6_OS 9815 0.0034 (10/2947) 0 * * Os_TE_455043 Chr3 19528477 19528478 - CRM-LTR_OS 7749 0.0007 (2/2997) 0 * * Os_TE_455038 Chr3 19526913 19526912 + RETROSAT2LTR 12796 0.6369 (1428/2242) 0 * * Os_TE_455019 Chr3 19516148 19516149 - SZ-22_LTR 4403 0.0003 (1/2988) 0 * Os_TE_455018 Os_TE_455018 Chr3 19516144 19516143 + ORSiTERTOOT00226 792 0.0003 (1/2989) 0 * Os_TE_455019 Os_TE_455015 Chr3 19515463 19515464 + COPIA2-LTR_OS 6433 0.0003 (1/2934) 0 * Os_TE_455014 Os_TE_455014 Chr3 19515459 19515458 - COPIA2-LTR_OS 6433 0.0003 (1/2939) 0 * Os_TE_455015 Os_TE_455012 Chr3 19511924 19511925 + ORSiTERTOOT00034 791 0.0003 (1/2993) 0 * Os_TE_455011 Os_TE_455011 Chr3 19511920 19511919 + ORSiTERTOOT00034 791 0.0003 (1/2992) 0 * Os_TE_455012 Os_TE_454975 Chr3 19492709 19492710 + RIREX_LTR 8828 0.0022 (5/2255) 0 * * Os_TE_454926 Chr3 19476100 19476101 + ORSiTERTOOT00034 791 0.0003 (1/2990) 0 * Os_TE_454925 Os_TE_454925 Chr3 19476096 19476095 - SZ-22_LTR 4403 0.0003 (1/2984) 0 * Os_TE_454926 Os_TE_454918 Chr3 19475303 19463122 + TRUNCATOR 2918 0.2780 (830/2986) 1 Intact Os_TE_454902 Os_TE_454902 Chr3 19463117 19475303 - TRUNCATOR 2918 0.2747 (818/2978) 1 Intact Os_TE_454918 Os_TE_454900 Chr3 19462769 19462768 - SZ-22_LTR 4403 0.0003 (1/2970) 0 * * Os_TE_454776 Chr3 19418556 19419156 - ORSiTETNOOT00134 607 0.2754 (820/2977) 1 Intact * Os_TE_454775 Chr3 19417768 19417769 + TRUNCATOR 2918 0.0015 (4/2624) 0 * * Os_TE_454755 Chr3 19409660 19409659 + RIRE7_LTR 7615 0.0003 (1/2943) 0 * * Os_TE_454751 Chr3 19408316 19408315 + ORSiTERTOOT00226 792 0.0881 (198/2248) -1 * * Os_TE_454576 Chr3 19339477 19339478 + RIREX_LTR 8828 0.1085 (312/2875) 0 * * Os_TE_454504 Chr3 19297206 19297205 - TRUNCATOR 2918 0.4323 (1222/2827) 0 * * Os_TE_454494 Chr3 19293631 19293632 + SZ-54C_LTR 5249 0.1053 (303/2877) 0 * Os_TE_454493 Os_TE_454493 Chr3 19293627 19293626 - ORSiTERTOOT00023 5086 0.1082 (311/2874) 0 * Os_TE_454494 Os_TE_454491 Chr3 19292886 19292887 - CRM-LTR_OS 7749 0.0006 (1/1766) 0 * * Os_TE_454418 Chr3 19255145 19255146 - RETROFIT_LTR 4866 0.0007 (2/2971) 0 * Os_TE_454417 Os_TE_454417 Chr3 19255142 19255141 + ORSiTERTOOT00033 4884 0.0007 (2/2973) 0 * Os_TE_454418 Os_TE_454376 Chr3 19244995 19244996 - MPING 430 0.0003 (1/2988) 0 * Os_TE_454375 Os_TE_454375 Chr3 19244993 19244992 + MPING 430 0.0003 (1/2983) 0 * Os_TE_454376 Os_TE_454353 Chr3 19237053 19237054 - TRUNCATOR2_LTR 2904 0.0453 (105/2317) 0 * * Os_TE_454343 Chr3 19225636 19225637 - RIRE5-LTR_OS 6427 0.0067 (20/2991) 0 * Os_TE_454342 Os_TE_454342 Chr3 19225629 19225628 + RIRE5-LTR_OS 6427 0.0064 (19/2991) 0 * Os_TE_454343 Os_TE_454288 Chr3 19196348 19196349 + STOWAWAY51_OS 246 0.0003 (1/2952) 0 * * Os_TE_454279 Chr3 19194355 19194356 + RETROSAT3_LTR 11537 0.0064 (19/2987) 0 * Os_TE_454278 Os_TE_454278 Chr3 19194351 19194350 - RETROSAT3_LTR 11537 0.0067 (20/2990) 0 * Os_TE_454279 Os_TE_454277 Chr3 19192764 19192763 + RETRO2_LTR 12874 0.0003 (1/2992) 0 * * Os_TE_454275 Chr3 19192379 19192380 - TRUNCATOR2_LTR 2904 0.0067 (20/2993) 0 * Os_TE_454274 Os_TE_454274 Chr3 19192375 19192374 + ORSiCMCM00100019 2717 0.0063 (19/2995) 0 * Os_TE_454275 Os_TE_454250 Chr3 19183152 19183151 + COPIA2-LTR_OS 6433 0.0003 (1/2951) 0 * * Os_TE_454244 Chr3 19180724 19180725 - RIRE5-LTR_OS 6427 0.0134 (19/1421) 0 * Os_TE_454243 Os_TE_454243 Chr3 19180717 19180716 + RIRE5-LTR_OS 6427 0.0148 (21/1422) 0 * Os_TE_454244 Os_TE_454242 Chr3 19180127 19180128 - SC-3_LTR 5748 0.0097 (14/1441) 0 * * Os_TE_454240 Chr3 19179617 19179616 + GYPSY-B_LTR 7068 0.0138 (20/1445) 0 * * Os_TE_454225 Chr3 19172272 19172273 - RETRO3_LTR 12751 0.0067 (20/2985) 0 * * Os_TE_454223 Chr3 19171394 19171395 + TRUNCATOR 2918 0.0037 (11/2987) 0 * * Os_TE_454222 Chr3 19171090 19171091 - RIRE2_LTR 11306 0.5447 (1622/2978) 0 * * Os_TE_454219 Chr3 19170064 19170063 - RIRE3A_LTR 10580 0.0062 (16/2595) 0 * * Os_TE_454165 Chr3 19140616 19140617 - RIREX_LTR 8828 0.0004 (1/2718) 0 * Os_TE_454164 Os_TE_454164 Chr3 19140612 19140611 + RIREX_LTR 8828 0.0004 (1/2680) 0 * Os_TE_454165 Os_TE_454163 Chr3 19140035 19140036 + COPIA2-LTR_OS 6433 0.0004 (1/2715) 0 * Os_TE_454162 Os_TE_454162 Chr3 19140031 19140030 - COPIA2-LTR_OS 6433 0.0004 (1/2710) 0 * Os_TE_454163 Os_TE_454152 Chr3 19138445 19138444 - ORSgTETN00200001 10994 0.0004 (1/2652) 0 * * Os_TE_454148 Chr3 19137222 19137221 + RIREX_LTR 8828 0.0004 (1/2684) 0 * * Os_TE_453870 Chr3 19013531 19013532 - SZ-22_LTR 4403 0.0004 (1/2592) 0 * Os_TE_453869 Os_TE_453869 Chr3 19013527 19013526 + ORSiTERTOOT00226 792 0.0004 (1/2596) 0 * Os_TE_453870 Os_TE_453868 Chr3 19012962 19012963 - RIRE2_LTR 11306 0.0073 (19/2599) 0 * * Os_TE_453865 Chr3 19012253 19012252 + ORSiTERTOOT00226 792 0.0641 (159/2482) 0 * * Os_TE_453842 Chr3 19008849 19008850 + ORSiTERTOOT00034 791 0.1257 (339/2696) 0 * * Os_TE_453840 Chr3 19008754 19008755 + ORSiTERTOOT00226 792 0.0575 (155/2694) 0 * Os_TE_453839 Os_TE_453839 Chr3 19008750 19008749 + ORSiTERTOOT00226 792 0.0568 (153/2695) 0 * Os_TE_453840 Os_TE_453837 Chr3 19008389 19008388 + ORSiTERTOOT00097 759 0.0004 (1/2709) 0 * * Os_TE_453836 Chr3 19007729 19007730 + ORSiTERTOOT00226 792 0.0041 (11/2709) 0 * Os_TE_453835 Os_TE_453835 Chr3 19007725 19007724 - SZ-22_LTR 4403 0.0041 (11/2708) 0 * Os_TE_453836 Os_TE_453649 Chr3 18930141 18930140 - RETROSAT2LTR 12796 0.6746 (1994/2956) 0 * * Os_TE_453648 Chr3 18930138 18930139 - TRUNCATOR 2918 0.7020 (1934/2755) 0 * * Os_TE_453632 Chr3 18919420 18906363 - RIRE3_LTR 12054 0.2825 (837/2963) 1 Intact * Os_TE_453577 Chr3 18884541 18884542 - SZ-22_LTR 4403 0.0007 (2/2985) 0 * Os_TE_453576 Os_TE_453576 Chr3 18884537 18884536 + ORSiTERTOOT00226 792 0.0007 (2/2986) 0 * Os_TE_453577 Os_TE_453572 Chr3 18882173 18882174 - AMYLTP 383 0.2098 (530/2526) 0 * Os_TE_453571 Os_TE_453571 Chr3 18882165 18882164 + AMYLTP 383 0.1927 (445/2309) 0 * Os_TE_453572 Os_TE_453562 Chr3 18881196 18881197 - TRUNCATOR 2918 0.0063 (18/2862) 0 * * Os_TE_453516 Chr3 18869490 18869489 + TRUNCATOR 2918 0.0010 (3/2993) 0 * * Os_TE_453414 Chr3 18833558 18833557 + RIRE3A_LTR 10580 0.4024 (934/2321) 0 * * Os_TE_453360 Chr3 18805840 18805841 + ORSiTERTOOT00027 10853 0.0185 (54/2922) 0 * * Os_TE_453261 Chr3 18767540 18767541 - COPIA2-LTR_OS 6433 0.0010 (3/2995) 0 * Os_TE_453260 Os_TE_453260 Chr3 18767536 18767535 + COPIA2-LTR_OS 6433 0.0010 (3/2994) 0 * Os_TE_453261 Os_TE_453166 Chr3 18729343 18729344 - RIREX_LTR 8828 0.0063 (19/2993) 0 * * Os_TE_453161 Chr3 18727716 18727715 - RIREX_LTR 8828 0.0060 (18/2987) 0 * * Os_TE_453160 Chr3 18727586 18727587 + ORSiCMCM00100019 2717 0.0003 (1/2989) 0 * Os_TE_453159 Os_TE_453159 Chr3 18727582 18727581 - TRUNCATOR2_LTR 2904 0.0003 (1/2984) 0 * Os_TE_453160 Os_TE_453147 Chr3 18721005 18721004 - SZ-22_LTR 4403 0.0003 (1/2996) 0 * * Os_TE_453143 Chr3 18719427 18719426 + TRUNCATOR2_LTR 2904 0.0050 (15/2971) 0 * * Os_TE_453134 Chr3 18715808 18715807 - ORSgTEMT00100799 337 0.0061 (18/2965) 0 * Os_TE_453133 Os_TE_453133 Chr3 18715805 18715806 + NDNA1TNA_OS 334 0.0067 (20/2974) 0 * Os_TE_453134 Os_TE_453078 Chr3 18683070 18683071 + ORSiTERTOOT00226 792 0.0486 (144/2965) 0 * Os_TE_453077 Os_TE_453077 Chr3 18683066 18683065 - SZ-22_LTR 4403 0.0487 (142/2915) 0 * Os_TE_453078 Os_TE_453076 Chr3 18678063 18678064 + ORSiTERTOOT00296 5553 0.0003 (1/2951) 0 * * Os_TE_453033 Chr3 18666596 18666595 - RETROSAT5_LTR 13878 0.1886 (557/2953) 0 * * Os_TE_452969 Chr3 18630963 18630964 - MDR2 6967 0.1892 (555/2934) 0 * * Os_TE_452953 Chr3 18626566 18626567 - ORSgTETNOOT01930 140 0.0069 (20/2911) 0 * * Os_TE_452921 Chr3 18579946 18579945 - COPIA2-LTR_OS 6433 0.0007 (1/1351) 0 * * Os_TE_452913 Chr3 18578987 18578988 + STOWAWAY51_OS 246 0.0064 (19/2952) 0 * * Os_TE_452894 Chr3 18570212 18570213 + OSTE33 1012 0.0051 (15/2945) 0 * Os_TE_452893 Os_TE_452893 Chr3 18570203 18570202 - OSTE33 1012 0.0048 (14/2938) 0 * Os_TE_452894 Os_TE_452870 Chr3 18565517 18565516 - GYPSO_LTR 9828 0.0031 (9/2900) 0 * * Os_TE_452866 Chr3 18563900 18563901 + COPIA2-LTR_OS 6433 0.0147 (44/2984) 0 * Os_TE_452865 Os_TE_452865 Chr3 18563896 18563895 - COPIA2-LTR_OS 6433 0.0154 (46/2987) 0 * Os_TE_452866 Os_TE_452812 Chr3 18543338 18543339 + MPING 430 0.0003 (1/2993) 0 * * Os_TE_452799 Chr3 18540939 18540940 + SZ-22_LTR 4403 0.0060 (18/2977) 0 * Os_TE_452798 Os_TE_452798 Chr3 18540935 18540934 - SZ-22_LTR 4403 0.0060 (18/2980) 0 * Os_TE_452799 Os_TE_452788 Chr3 18539761 18539762 + COPI2_LTR 4733 0.0004 (1/2705) 0 * * Os_TE_452786 Chr3 18539409 18539410 - RIREX_LTR 8828 0.0004 (1/2466) 0 * * Os_TE_452784 Chr3 18538397 18538396 - SZ-22_LTR 4403 0.0004 (1/2746) 0 * * Os_TE_452779 Chr3 18537148 18537149 - SZ-22_LTR 4403 0.0003 (1/2959) 0 * Os_TE_452778 Os_TE_452778 Chr3 18537144 18537143 + ORSiTERTOOT00226 792 0.0003 (1/2961) 0 * Os_TE_452779 Os_TE_452760 Chr3 18529635 18529636 + RIREX_LTR 8828 0.0003 (1/2997) 0 * Os_TE_452759 Os_TE_452759 Chr3 18529631 18529630 - RIREX_LTR 8828 0.0003 (1/2999) 0 * Os_TE_452760 Os_TE_452706 Chr3 18495985 18495984 - ORSiTERT00200154 9386 0.0052 (15/2905) 0 * * Os_TE_452704 Chr3 18495904 18495903 - RIRE3_LTR 12054 0.2071 (592/2858) 0 * * Os_TE_452697 Chr3 18492217 18492218 + RIREX_LTR 8828 0.0532 (158/2970) 0 * Os_TE_452696 Os_TE_452696 Chr3 18492213 18492212 - RIREX_LTR 8828 0.0528 (157/2974) 0 * Os_TE_452697 Os_TE_452681 Chr3 18488327 18488328 + ORSiTERTOOT00226 792 0.0003 (1/2979) 0 * * Os_TE_452674 Chr3 18485586 18485587 + OSTONOR1_LTR 6440 0.0013 (4/2997) 0 * Os_TE_452673 Os_TE_452673 Chr3 18485582 18485581 - ORSiTERT00100062 5674 0.0017 (5/2997) 0 * Os_TE_452674 Os_TE_452636 Chr3 18443107 18443108 - SZ-22_LTR 4403 0.0009 (2/2319) 0 * Os_TE_452635 Os_TE_452635 Chr3 18443103 18443102 + ORSiTERTOOT00226 792 0.0007 (2/2676) 0 * Os_TE_452636 Os_TE_452633 Chr3 18441650 18441651 + ORSgTEMT00901862 245 0.0003 (1/2956) 0 * * Os_TE_452618 Chr3 18437860 18437859 - RETRO1_LTR 8314 0.0665 (195/2931) 0 * * Os_TE_452608 Chr3 18436477 18436478 + COPIA2-LTR_OS 6433 0.0003 (1/2980) 0 * * Os_TE_452598 Chr3 18408364 18408365 - ORSgTERT00201216 11284 0.0050 (15/2987) 0 * Os_TE_452597 Os_TE_452597 Chr3 18408360 18408359 - RIRE2_LTR 11306 0.0050 (15/2986) 0 * Os_TE_452598 Os_TE_452596 Chr3 18408260 18408259 + CACTA-B 1103 0.7287 (2162/2967) 0 * Os_TE_452595 Os_TE_452595 Chr3 18408259 18408260 - ORSgTETN00200001 10994 0.7182 (2077/2892) 0 * Os_TE_452596 Os_TE_452593 Chr3 18407895 18407894 + SPMLIKE 10989 0.0003 (1/2868) 0 * * Os_TE_452592 Chr3 18407784 18407785 - ORSgTERT00201216 11284 0.0501 (148/2953) 0 * Os_TE_452591 Os_TE_452591 Chr3 18407780 18407779 - RIRE2_LTR 11306 0.0525 (155/2951) 0 * Os_TE_452592 Os_TE_452542 Chr3 18324182 18324183 - ORSiTERT00200154 9386 0.4165 (1232/2958) 0 * Os_TE_452541 Os_TE_452541 Chr3 18324176 18324175 + TRUNCATOR 2918 0.4301 (1288/2995) 0 * Os_TE_452542 Os_TE_452540 Chr3 18324175 18324176 - TRUNCATOR 2918 0.4192 (1242/2963) 0 * * Os_TE_452538 Chr3 18323759 18323760 - TELIA 141 0.0017 (5/2971) 0 * Os_TE_452537 Os_TE_452537 Chr3 18323751 18323750 + TELIA 141 0.0013 (4/2972) 0 * Os_TE_452538 Os_TE_452473 Chr3 18281212 18281211 - TRUNCATOR2_LTR 2904 0.0003 (1/2981) 0 * * Os_TE_452438 Chr3 18267228 18267229 + COPIA2-LTR_OS 6433 0.0040 (12/2990) 0 * Os_TE_452437 Os_TE_452437 Chr3 18267224 18267223 - COPIA2-LTR_OS 6433 0.0044 (13/2988) 0 * Os_TE_452438 Os_TE_452350 Chr3 18231630 18231629 + TRUNCATOR 2918 0.0013 (4/2997) 0 * Os_TE_452349 Os_TE_452349 Chr3 18231629 18231630 - TRUNCATOR 2918 0.0017 (5/2997) 0 * Os_TE_452350 Os_TE_452346 Chr3 18227220 18227221 - AMYLTP 383 0.0010 (3/2997) 0 * Os_TE_452345 Os_TE_452345 Chr3 18227212 18227211 + AMYLTP 383 0.0010 (3/2996) 0 * Os_TE_452346 Os_TE_452325 Chr3 18215307 18215308 + ORSgTETNOOT00908 242 0.0027 (8/2950) 0 * Os_TE_452324 Os_TE_452324 Chr3 18215303 18215302 + ORSgTETNOOT01219 231 0.0027 (8/2996) 0 * Os_TE_452325 Os_TE_452323 Chr3 18210339 18210340 - NDNA1TNA_OS 334 0.0050 (15/2997) 0 * Os_TE_452322 Os_TE_452322 Chr3 18210337 18210336 + NDNA1TNA_OS 334 0.0050 (15/2994) 0 * Os_TE_452323 Os_TE_452274 Chr3 18190247 18190246 + TRUNCATOR 2918 0.1014 (304/2998) 0 * Os_TE_452273 Os_TE_452273 Chr3 18190244 18190245 - TRUNCATOR 2918 0.0940 (280/2980) 0 * Os_TE_452274 Os_TE_452264 Chr3 18187764 18187765 + RIRE3A_LTR 10580 0.0047 (14/2995) 0 * * Os_TE_452235 Chr3 18181187 18181188 - ORSgTEMT02400179 221 0.0661 (196/2963) 0 * Os_TE_452234 Os_TE_452234 Chr3 18181186 18181185 - TYPEM 227 0.0697 (208/2984) 0 * Os_TE_452235 Os_TE_452224 Chr3 18178637 18178638 + ORSiTETN00100011 676 0.0585 (174/2974) 0 * * Os_TE_452218 Chr3 18175817 18175818 - SZ-50_LTR 11691 0.0017 (5/2921) 0 * Os_TE_452217 Os_TE_452217 Chr3 18175813 18175812 + SZ-50_LTR 11691 0.0017 (5/2918) 0 * Os_TE_452218 Os_TE_452209 Chr3 18171944 18175762 + TWIF 586 0.2422 (702/2899) 1 Intact * Os_TE_452194 Chr3 18160578 18160579 + RIREX_LTR 8828 0.0017 (5/2997) 0 * Os_TE_452193 Os_TE_452193 Chr3 18160574 18160573 - RIREX_LTR 8828 0.0010 (3/2999) 0 * Os_TE_452194 Os_TE_452190 Chr3 18154089 18154090 + ORSgTEMT01601122 212 0.0010 (3/2979) 0 * * Os_TE_452170 Chr3 18149676 18149677 - RIREX_LTR 8828 0.0010 (3/2974) 0 * Os_TE_452169 Os_TE_452169 Chr3 18149672 18149671 + RIREX_LTR 8828 0.0010 (3/2972) 0 * Os_TE_452170 Os_TE_452167 Chr3 18149188 18149187 + COPIA2-LTR_OS 6433 0.0003 (1/2954) 0 * * Os_TE_452163 Chr3 18146936 18146937 - ORSgTEMT02400246 177 0.0013 (4/2982) 0 * * Os_TE_452162 Chr3 18146922 18146923 - RETRO1_LTR 8314 0.0013 (4/2985) 0 * * Os_TE_452140 Chr3 18136367 18136368 - SC-3_LTR 5748 0.0010 (3/2981) 0 * Os_TE_452139 Os_TE_452139 Chr3 18136363 18136362 + ORSiTERTOOT00296 5553 0.0010 (3/2983) 0 * Os_TE_452140 Os_TE_452127 Chr3 18131159 18131160 - SC-8_LTR 4951 0.0003 (1/2998) 0 * Os_TE_452126 Os_TE_452126 Chr3 18131155 18131154 + SC-8_LTR 4951 0.0003 (1/2998) 0 * Os_TE_452127 Os_TE_452115 Chr3 18123458 18123459 + SZ-67LTR 1540 0.1588 (475/2992) 0 * Os_TE_452114 Os_TE_452114 Chr3 18123454 18123453 - SZ-67LTR 1540 0.1612 (482/2991) 0 * Os_TE_452115 Os_TE_452112 Chr3 18121539 18121538 - TRUNCATOR 2918 0.0033 (10/2993) 0 * * Os_TE_452096 Chr3 18110942 18110943 - TRUNCATOR2_LTR 2904 0.1015 (304/2995) 0 * Os_TE_452095 Os_TE_452095 Chr3 18110938 18110937 + ORSiTERTOOT00028 8600 0.0978 (292/2987) 0 * Os_TE_452096 Os_TE_452073 Chr3 18099752 18099753 - STOWAWAY1_OS 149 0.0014 (4/2943) 0 * Os_TE_452072 Os_TE_452072 Chr3 18099751 18099750 + STOWAWAY1_OS 149 0.0014 (4/2941) 0 * Os_TE_452073 Os_TE_452067 Chr3 18099035 18099036 - ORSgTETNOOT01607 258 0.0013 (4/2975) 0 * Os_TE_452066 Os_TE_452066 Chr3 18099034 18099033 + ORSgTETNOOT01583 259 0.0017 (5/2982) 0 * Os_TE_452067 Os_TE_452063 Chr3 18098869 18098868 - RIREX_LTR 8828 0.0007 (2/2979) 0 * * Os_TE_452052 Chr3 18087429 18087430 + COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_452051 Os_TE_452051 Chr3 18087425 18087424 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_452052 Os_TE_451987 Chr3 18052966 18052967 - RIREX_LTR 8828 0.0003 (1/2984) 0 * Os_TE_451986 Os_TE_451986 Chr3 18052962 18052961 + RIREX_LTR 8828 0.0003 (1/2988) 0 * Os_TE_451987 Os_TE_451975 Chr3 18045014 18045015 - COPIA2-LTR_OS 6433 0.0007 (2/2984) 0 * Os_TE_451974 Os_TE_451974 Chr3 18045010 18045009 + COPIA2-LTR_OS 6433 0.0007 (2/2990) 0 * Os_TE_451975 Os_TE_451972 Chr3 18042816 18042815 + ORSgTEMT01400031 216 0.0017 (5/2894) 0 * * Os_TE_451965 Chr3 18040997 18040998 + ORSiTERTOOT00296 5553 0.0030 (9/2989) 0 * Os_TE_451964 Os_TE_451964 Chr3 18040993 18040992 - SC-3_LTR 5748 0.0030 (9/2991) 0 * Os_TE_451965 Os_TE_451955 Chr3 18033570 18033571 - SC-3_LTR 5748 0.0003 (1/2995) 0 * * Os_TE_451943 Chr3 18029620 18029621 - SC-8_LTR 4951 0.5091 (1517/2980) 0 * Os_TE_451942 Os_TE_451942 Chr3 18029616 18029615 + ORSiTERTOOT00381 4988 0.5082 (1518/2987) 0 * Os_TE_451943 Os_TE_451931 Chr3 18023354 18023355 - MERMITE18C 1473 0.0010 (3/2953) 0 * * Os_TE_451851 Chr3 17976188 17976189 + ORSiCMCM00100019 2717 0.0044 (13/2976) 0 * Os_TE_451850 Os_TE_451850 Chr3 17976184 17976183 - TRUNCATOR2_LTR 2904 0.0047 (14/2964) 0 * Os_TE_451851 Os_TE_451748 Chr3 17942471 17942472 + RIREX_LTR 8828 0.0010 (3/2991) 0 * Os_TE_451747 Os_TE_451747 Chr3 17942467 17942466 - RIREX_LTR 8828 0.0010 (3/2990) 0 * Os_TE_451748 Os_TE_451746 Chr3 17942385 17942386 - DS-RICE2N 613 0.0017 (5/2987) 0 * Os_TE_451745 Os_TE_451745 Chr3 17942378 17942377 + DS-RICE2N 613 0.0017 (5/2986) 0 * Os_TE_451746 Os_TE_451731 Chr3 17933128 17933129 + COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_451730 Os_TE_451730 Chr3 17933124 17933123 - COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_451731 Os_TE_451702 Chr3 17926503 17926504 + SPMLIKE 10989 0.0004 (1/2757) 0 * Os_TE_451701 Os_TE_451701 Chr3 17926501 17926500 - SPMLIKE 10989 0.0004 (1/2732) 0 * Os_TE_451702 Os_TE_451654 Chr3 17914808 17914807 + ORSgTEMT02000018 177 0.0027 (8/2912) 0 * * Os_TE_451652 Chr3 17912647 17912648 + STOWAWAY45_OS 266 0.0010 (3/2996) 0 * * Os_TE_451634 Chr3 17903705 17903706 - EnSpm-13_OS 11171 0.0003 (1/2972) 0 * Os_TE_451633 Os_TE_451633 Chr3 17903703 17903702 + EnSpm-13_OS 11171 0.0003 (1/2972) 0 * Os_TE_451634 Os_TE_451616 Chr3 17892463 17892464 - TELIA 141 0.0003 (1/2969) 0 * Os_TE_451615 Os_TE_451615 Chr3 17892455 17892454 + TELIA 141 0.0003 (1/2941) 0 * Os_TE_451616 Os_TE_451609 Chr3 17888669 17888670 - SC-3_LTR 5748 0.0003 (1/2993) 0 * * Os_TE_451601 Chr3 17884821 17884822 + ORSgTETNOOT01531 255 0.0003 (1/2972) 0 * Os_TE_451600 Os_TE_451600 Chr3 17884817 17884816 + ORSgTETNOOT01686 252 0.0007 (2/2966) 0 * Os_TE_451601 Os_TE_451598 Chr3 17883473 17883472 + ORSiTERTOOT00028 8600 0.4381 (966/2205) 0 * * Os_TE_451596 Chr3 17883121 17883122 + RETRO2_LTR 12874 0.0048 (14/2902) 0 * * Os_TE_451584 Chr3 17878231 17879985 - SZ-55_LTR 10318 0.3836 (750/1955) 1 Solo_LTR * Os_TE_451558 Chr3 17864103 17864104 + ORSiCMCM00100019 2717 0.0194 (58/2988) 0 * Os_TE_451557 Os_TE_451557 Chr3 17864099 17864098 - TRUNCATOR2_LTR 2904 0.0204 (61/2991) 0 * Os_TE_451558 Os_TE_451555 Chr3 17863698 17863697 + TRUNCATOR 2918 0.1024 (306/2989) 0 * Os_TE_451554 Os_TE_451554 Chr3 17863697 17863698 - TRUNCATOR 2918 0.0979 (292/2983) 0 * Os_TE_451555 Os_TE_451529 Chr3 17853797 17853798 - ORSiTETNOOT00134 607 0.0003 (1/2947) 0 * Os_TE_451528 Os_TE_451528 Chr3 17853790 17853789 + TWIF 586 0.0007 (2/2976) 0 * Os_TE_451529 Os_TE_451516 Chr3 17849995 17849996 + ORSiTERTOOT00226 792 0.0003 (1/2979) 0 * Os_TE_451515 Os_TE_451515 Chr3 17849991 17849990 - SZ-22_LTR 4403 0.0003 (1/2980) 0 * Os_TE_451516 Os_TE_451514 Chr3 17849581 17849582 - NDNA1TNA_OS 334 0.0024 (7/2931) 0 * * Os_TE_451511 Chr3 17847516 17847517 - ORSgTEMT00500057 149 0.0003 (1/2979) 0 * * Os_TE_451510 Chr3 17846927 17846928 + INDITTO 263 0.0017 (5/2943) 0 * Os_TE_451509 Os_TE_451509 Chr3 17846925 17846924 - INDITTO 263 0.0017 (5/2970) 0 * Os_TE_451510 Os_TE_451508 Chr3 17846886 17846885 - SZLTR 1249 0.0047 (14/2965) 0 * * Os_TE_451468 Chr3 17830897 17830898 + COPIA2-LTR_OS 6433 0.0003 (1/2982) 0 * Os_TE_451467 Os_TE_451467 Chr3 17830893 17830892 - COPIA2-LTR_OS 6433 0.0003 (1/2975) 0 * Os_TE_451468 Os_TE_451463 Chr3 17830117 17830118 - STOWAWAY11_OS 292 0.0004 (1/2686) 0 * * Os_TE_451452 Chr3 17829390 17829389 + STOWAWAY50_OS 174 0.0006 (1/1783) 0 * * Os_TE_451396 Chr3 17811640 17811639 - CENTRE 280 0.0007 (2/2998) 0 * * Os_TE_451373 Chr3 17802271 17802272 - RIREX_LTR 8828 0.0017 (5/2998) 0 * * Os_TE_451359 Chr3 17796926 17796927 - OSTE33 1012 0.7310 (2182/2985) 0 * Os_TE_451358 Os_TE_451358 Chr3 17796917 17796916 - OSTE33 1012 0.7270 (2154/2963) 0 * Os_TE_451359 Os_TE_451355 Chr3 17795000 17795001 - SZ-22_LTR 4403 0.0003 (1/2989) 0 * * Os_TE_451323 Chr3 17788218 17788217 + COPIA2-LTR_OS 6433 0.0003 (1/2962) 0 * * Os_TE_451311 Chr3 17778804 17778803 - RETROSAT2LTRA 3112 0.0501 (149/2977) 0 * * Os_TE_451301 Chr3 17776774 17776775 - MERMITEJ 1498 0.0003 (1/2899) 0 * Os_TE_451300 Os_TE_451300 Chr3 17776766 17776765 + MERMITEJ 1498 0.0003 (1/2900) 0 * Os_TE_451301 Os_TE_451257 Chr3 17756811 17756812 + ORSiTERTOOT00296 5553 0.0003 (1/2992) 0 * Os_TE_451256 Os_TE_451256 Chr3 17756807 17756806 - SC-3_LTR 5748 0.0003 (1/2984) 0 * Os_TE_451257 Os_TE_451245 Chr3 17752706 17752707 - RETRO2_LTR 12874 0.0050 (14/2826) 0 * * Os_TE_451226 Chr3 17751507 17751508 + ORSiTERTOOT00028 8600 0.4893 (1412/2886) 0 * * Os_TE_451199 Chr3 17741389 17741390 - ORSiTETNOOT00216 3569 0.0047 (14/2987) 0 * Os_TE_451198 Os_TE_451198 Chr3 17741382 17741381 + TWIFBIG 3567 0.0054 (16/2988) 0 * Os_TE_451199 Os_TE_451197 Chr3 17741241 17741242 - COPI1_LTR 4721 0.0013 (4/2978) 0 * Os_TE_451196 Os_TE_451196 Chr3 17741237 17741236 + COPI1_LTR 4721 0.0017 (5/2963) 0 * Os_TE_451197 Os_TE_451183 Chr3 17737075 17737074 + ORSiTERTOOT00226 792 0.0003 (1/2885) 0 * * Os_TE_451142 Chr3 17710001 17710000 + CLOUD-7 495 0.0020 (6/2983) 0 * * Os_TE_451133 Chr3 17704730 17704731 - DS-RICE4N 715 0.0013 (4/2995) 0 * * Os_TE_451122 Chr3 17699481 17699482 - RIRE3_LTR 12054 0.0050 (15/2993) 0 * Os_TE_451121 Os_TE_451121 Chr3 17699477 17699476 + RIRE3_LTR 12054 0.0047 (14/2993) 0 * Os_TE_451122 Os_TE_451120 Chr3 17699330 17699329 + TRUNCATOR 2918 0.0020 (6/2987) 0 * Os_TE_451119 Os_TE_451119 Chr3 17699329 17699330 - TRUNCATOR 2918 0.0003 (1/2967) 0 * Os_TE_451120 Os_TE_451115 Chr3 17696563 17696562 - SZ-44LTR 1408 0.0017 (5/2991) 0 * * Os_TE_451103 Chr3 17692087 17692088 + ORSiCMCM00100019 2717 0.0060 (18/2997) 0 * Os_TE_451102 Os_TE_451102 Chr3 17692083 17692082 - TRUNCATOR2_LTR 2904 0.0060 (18/2997) 0 * Os_TE_451103 Os_TE_451096 Chr3 17687915 17687914 - ORSgTEMT00901723 248 0.0017 (5/2980) 0 * * Os_TE_451088 Chr3 17685803 17685804 - SC-3_LTR 5748 0.0054 (16/2982) 0 * * Os_TE_451085 Chr3 17684061 17684060 + INDITTO 263 0.7104 (2097/2952) 0 * * Os_TE_451077 Chr3 17672840 17672839 + TRSA_OS 353 0.0003 (1/2980) 0 * * Os_TE_451074 Chr3 17670201 17670202 + ORSiTERTOOT00296 5553 0.0003 (1/2994) 0 * Os_TE_451073 Os_TE_451073 Chr3 17670197 17670196 - SC-3_LTR 5748 0.0003 (1/2994) 0 * Os_TE_451074 Os_TE_451034 Chr3 17661108 17661109 - HATOS1 3488 0.0018 (5/2831) 0 * Os_TE_451033 Os_TE_451033 Chr3 17661101 17661100 + QINNIU 528 0.0036 (5/1389) 0 * Os_TE_451034 Os_TE_451032 Chr3 17661029 17661028 + ORSiTERTOOT00226 792 0.0004 (1/2841) 0 * * Os_TE_451030 Chr3 17660972 17660971 + COPI2_LTR 4733 0.0014 (4/2890) 0 * * Os_TE_451027 Chr3 17659625 17659624 - INDITTO 263 0.7102 (2095/2950) 0 * * Os_TE_450941 Chr3 17634859 17634858 - TRUNCATOR2_LTR 2904 0.0003 (1/2996) 0 * * Os_TE_450906 Chr3 17617805 17617806 - ORSgTETNOOT01607 258 0.0017 (5/2994) 0 * * Os_TE_450898 Chr3 17614824 17614825 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * * Os_TE_450886 Chr3 17602094 17602095 - GYPSY-A_LTR 8951 0.0007 (2/2993) 0 * Os_TE_450885 Os_TE_450885 Chr3 17602090 17602089 + SZ-40LTR 2465 0.0007 (2/2994) 0 * Os_TE_450886 Os_TE_450882 Chr3 17599180 17599181 + TWIFBIG 3567 0.0787 (234/2975) 0 * Os_TE_450881 Os_TE_450881 Chr3 17599173 17599172 - ORSiTETNOOT00200 3563 0.0856 (256/2990) 0 * Os_TE_450882 Os_TE_450854 Chr3 17587899 17583126 - RETROFIT2_LTR 4774 0.2759 (821/2976) 1 Intact Os_TE_450849 Os_TE_450849 Chr3 17583126 17587899 + RETROFIT2_LTR 4774 0.2774 (827/2981) 1 Intact Os_TE_450854 Os_TE_450824 Chr3 17575717 17576146 - MPING 430 0.0068 (20/2959) 1 Intact * Os_TE_450768 Chr3 17557006 17557005 + TRUNCATOR 2918 0.6202 (1844/2973) 0 * Os_TE_450767 Os_TE_450767 Chr3 17557005 17557006 - TRUNCATOR 2918 0.6096 (1788/2933) 0 * Os_TE_450768 Os_TE_450717 Chr3 17537822 17537821 - STOWAWAY44_OS 240 0.0003 (1/2985) 0 * * Os_TE_450712 Chr3 17535803 17535804 + SZ-28LTR 262 0.0017 (5/2979) 0 * * Os_TE_450661 Chr3 17520074 17520075 + ORSiTERTOOT00296 5553 0.0003 (1/2984) 0 * * Os_TE_450658 Chr3 17516158 17516157 - STOWAWAY51_OS 246 0.0003 (1/2978) 0 * * Os_TE_450646 Chr3 17513781 17513780 - ORSgTEMT00500111 145 0.0003 (1/2890) 0 * * Os_TE_450638 Chr3 17506210 17493693 - RETROSAT2LTR 12796 0.2868 (857/2988) 1 Intact Os_TE_450626 Os_TE_450626 Chr3 17493693 17506208 + RETROSAT2LTR 12796 0.2797 (832/2975) 1 Intact Os_TE_450638 Os_TE_450583 Chr3 17476661 17476662 - HATOS1 3488 0.0003 (1/2992) 0 * * Os_TE_450561 Chr3 17471130 17471129 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * * Os_TE_450558 Chr3 17470785 17470786 - ORSiTERTOOT00332 5395 0.0053 (16/2991) 0 * Os_TE_450557 Os_TE_450557 Chr3 17470781 17470780 + ORSiTERTOOT00332 5395 0.0054 (16/2988) 0 * Os_TE_450558 Os_TE_450555 Chr3 17469590 17469591 + RIREX_LTR 8828 0.0023 (7/2993) 0 * Os_TE_450554 Os_TE_450554 Chr3 17469586 17469585 - RIREX_LTR 8828 0.0023 (7/2993) 0 * Os_TE_450555 Os_TE_450553 Chr3 17468160 17468161 - ORSgTEMT01601208 238 0.0017 (5/2903) 0 * * Os_TE_450539 Chr3 17464904 17464903 + RIRE2_LTR 11306 0.0023 (7/2999) 0 * * Os_TE_450532 Chr3 17458740 17458739 - SZ-22_LTR 4403 0.0010 (3/2934) 0 * * Os_TE_450514 Chr3 17449163 17449164 + INDITTO 263 0.0007 (2/2976) 0 * Os_TE_450513 Os_TE_450513 Chr3 17449161 17449160 - INDITTO 263 0.0007 (2/2976) 0 * Os_TE_450514 Os_TE_450497 Chr3 17444314 17444313 - SZ-48LTR 3632 0.0023 (7/2990) 0 * * Os_TE_450486 Chr3 17441788 17441789 + RIRE2_LTR 11306 0.0272 (81/2976) 0 * * Os_TE_450477 Chr3 17439427 17439426 - NDNA1TNA_OS 334 0.0285 (84/2952) 0 * * Os_TE_450467 Chr3 17432931 17432930 - TRUNCATOR 2918 0.0687 (93/1354) 0 * * Os_TE_450428 Chr3 17417840 17417841 + RETRO2_LTR 12874 0.0267 (77/2883) 0 * * Os_TE_450411 Chr3 17416581 17416582 - ORSgTEMT00501259 146 0.0266 (79/2970) 0 * * Os_TE_450409 Chr3 17416372 17416371 - ORSgTEMT00100578 341 0.0287 (85/2963) 0 * * Os_TE_450389 Chr3 17407863 17407862 + CACTA-H 1152 0.6924 (2010/2903) 0 * Os_TE_450388 Os_TE_450388 Chr3 17407862 17407863 + ORSgTETN00200005 1121 0.6899 (1989/2883) 0 * Os_TE_450389 Os_TE_450385 Chr3 17402724 17402725 - SZ-22_LTR 4403 0.0003 (1/2998) 0 * Os_TE_450384 Os_TE_450384 Chr3 17402720 17402719 + ORSiTERTOOT00226 792 0.0003 (1/2998) 0 * Os_TE_450385 Os_TE_450359 Chr3 17396411 17396412 - MERMITE18B 1306 0.0277 (83/2992) 0 * * Os_TE_450341 Chr3 17389963 17389964 - SZ-22_LTR 4403 0.0003 (1/2983) 0 * Os_TE_450340 Os_TE_450340 Chr3 17389959 17389958 + ORSiTERTOOT00226 792 0.0003 (1/2989) 0 * Os_TE_450341 Os_TE_450270 Chr3 17362053 17362054 + RETROSAT2LTR 12796 0.0010 (3/2996) 0 * Os_TE_450269 Os_TE_450269 Chr3 17362051 17362050 - RETROSAT2LTR 12796 0.0010 (3/2999) 0 * Os_TE_450270 Os_TE_450268 Chr3 17362014 17362015 - ORSiTETNOOT00216 3569 0.0020 (6/2994) 0 * Os_TE_450267 Os_TE_450267 Chr3 17362007 17362006 + TWIFBIG 3567 0.0023 (7/2996) 0 * Os_TE_450268 Os_TE_450266 Chr3 17361893 17361892 - DS-RICE2N 613 0.0267 (80/2998) 0 * * Os_TE_450265 Chr3 17361486 17361487 + RETRO2A_LTR 12895 0.0003 (1/2937) 0 * * Os_TE_450255 Chr3 17354003 17354004 - COPIA2-LTR_OS 6433 0.0007 (2/2984) 0 * Os_TE_450254 Os_TE_450254 Chr3 17353999 17353998 + COPIA2-LTR_OS 6433 0.0003 (1/2986) 0 * Os_TE_450255 Os_TE_450233 Chr3 17344882 17344883 - STOWAWAY11_OS 292 0.0295 (82/2782) 0 * Os_TE_450232 Os_TE_450232 Chr3 17344881 17344880 + STOWAWAY11_OS 292 0.0314 (88/2806) 0 * Os_TE_450233 Os_TE_450222 Chr3 17344196 17344197 + MPING 430 0.0017 (5/2973) 0 * Os_TE_450221 Os_TE_450221 Chr3 17344194 17344193 - MPING 430 0.0017 (5/2977) 0 * Os_TE_450222 Os_TE_450217 Chr3 17343477 17343478 - TELIA 141 0.0004 (1/2742) 0 * * Os_TE_450181 Chr3 17333817 17333818 + SINE03_OS 360 0.0298 (79/2654) 0 * * Os_TE_450176 Chr3 17330728 17330729 - COPI2_LTR 4733 0.0007 (2/2997) 0 * Os_TE_450175 Os_TE_450175 Chr3 17330724 17330723 + COPI2_LTR 4733 0.0007 (2/2998) 0 * Os_TE_450176 Os_TE_450138 Chr3 17296679 17296680 - RETRO1_LTR 8314 0.0024 (7/2919) 0 * Os_TE_450137 Os_TE_450137 Chr3 17296675 17296674 + RETRO2A_LTR 12895 0.0024 (7/2940) 0 * Os_TE_450138 Os_TE_450127 Chr3 17293307 17293306 + STOWAWAY13_OS 251 0.0011 (3/2735) 0 * * Os_TE_450118 Chr3 17284636 17283231 + OSTE33 1012 0.3320 (938/2825) 1 Intact Os_TE_450116 Os_TE_450116 Chr3 17283231 17284636 + OSTE33 1012 0.3311 (928/2803) 1 Intact Os_TE_450118 Os_TE_450085 Chr3 17273862 17273861 - GYPSY-A_LTR 8951 0.0047 (14/2990) 0 * * Os_TE_450067 Chr3 17270087 17270088 + MPING 430 0.0003 (1/2882) 0 * Os_TE_450066 Os_TE_450066 Chr3 17270085 17270084 - MPING 430 0.0003 (1/2889) 0 * Os_TE_450067 Os_TE_450065 Chr3 17269278 17269279 - MPING 430 0.0003 (1/2903) 0 * Os_TE_450064 Os_TE_450064 Chr3 17269276 17269275 + MPING 430 0.0003 (1/2973) 0 * Os_TE_450065 Os_TE_450034 Chr3 17266682 17266681 - ORSgTEMT00900811 214 0.0249 (73/2936) 0 * * Os_TE_450013 Chr3 17252342 17252343 + ORSgTEMT01400003 213 0.6544 (1909/2917) 0 * Os_TE_450012 Os_TE_450012 Chr3 17252340 17252339 - ORSgTEMT01600531 236 0.6575 (1931/2937) 0 * Os_TE_450013 Os_TE_450011 Chr3 17251828 17251618 - ORSgTEMT01400019 216 0.3467 (1031/2974) 1 Intact Os_TE_450009 Os_TE_450009 Chr3 17251618 17251824 - ORSgTEMT01400012 212 0.3717 (1039/2795) 1 Intact Os_TE_450011 Os_TE_450005 Chr3 17250631 17251203 - SZ-7A_LTR 11400 0.3504 (1041/2971) 1 Solo_LTR * Os_TE_450003 Chr3 17249583 17249584 - STOWAWAY11_OS 292 0.6772 (1892/2794) 0 * * Os_TE_449990 Chr3 17240168 17239324 + MUDRN1_OS 764 0.3431 (1022/2979) 1 Intact Os_TE_449988 Os_TE_449988 Chr3 17239324 17240168 - MUDRN1_OS 764 0.3501 (1031/2945) 1 Intact Os_TE_449990 Os_TE_449983 Chr3 17236356 17213797 - RPO_OS 1983 0.3499 (1042/2978) 1 Intact * Os_TE_449936 Chr3 17213290 17213289 + GYPSO_LTR 9828 0.0023 (7/2984) 0 * * Os_TE_449932 Chr3 17210625 17210626 + MPING 430 0.0003 (1/2985) 0 * Os_TE_449931 Os_TE_449931 Chr3 17210623 17210622 - MPING 430 0.0003 (1/2988) 0 * Os_TE_449932 Os_TE_449908 Chr3 17204420 17204419 + TREP219 104 0.0020 (6/2979) 0 * Os_TE_449907 Os_TE_449907 Chr3 17204414 17204415 - TREP219 104 0.0020 (6/2985) 0 * Os_TE_449908 Os_TE_449891 Chr3 17200102 17200101 + SPMLIKE 10989 0.0054 (16/2959) 0 * * Os_TE_449860 Chr3 17195605 17195606 - ORSgTEMT01602420 228 0.0465 (138/2968) 0 * * Os_TE_449847 Chr3 17191297 17191298 - RETRO1_LTR 8314 0.0245 (71/2894) 0 * * Os_TE_449842 Chr3 17190673 17190672 + MPING 430 0.0003 (1/2988) 0 * * Os_TE_449793 Chr3 17173664 17173318 + NDNA2TNA_OS 346 0.3207 (960/2993) 1 Intact Os_TE_449791 Os_TE_449791 Chr3 17173318 17173664 - NDNA2TNA_OS 346 0.3174 (948/2987) 1 Intact Os_TE_449793 Os_TE_449716 Chr3 17158308 17158309 - INDITTO 263 0.5780 (1722/2979) 0 * Os_TE_449715 Os_TE_449715 Chr3 17158306 17158305 + INDITTO 263 0.5758 (1709/2968) 0 * Os_TE_449716 Os_TE_449713 Chr3 17157536 17146499 - ORSgTETN00200001 10994 0.3442 (1010/2934) 1 Intact Os_TE_449708 Os_TE_449708 Chr3 17146500 17157534 + SPMLIKE 10989 0.3404 (994/2920) 1 Intact Os_TE_449713 Os_TE_449703 Chr3 17143310 17143311 - SZ-22_LTR 4403 0.0003 (1/2958) 0 * Os_TE_449702 Os_TE_449702 Chr3 17143306 17143305 + ORSiTERTOOT00226 792 0.0003 (1/2970) 0 * Os_TE_449703 Os_TE_449698 Chr3 17142638 17142637 + NDNA1TNA_OS 334 0.0239 (71/2972) 0 * * Os_TE_449632 Chr3 17125386 17125385 + ORSiCMCM00100013 9728 0.0003 (1/2946) 0 * * Os_TE_449606 Chr3 17113829 17113828 + STOWAWAY51_OS 246 0.0277 (81/2922) 0 * Os_TE_449605 Os_TE_449605 Chr3 17113823 17113824 - STOWAWAY51_OS 246 0.0231 (67/2896) 0 * Os_TE_449606 Os_TE_449561 Chr3 17089855 17089856 + COPI2_LTR 4733 0.0003 (1/2976) 0 * Os_TE_449560 Os_TE_449560 Chr3 17089851 17089850 - COPI2_LTR 4733 0.0003 (1/2971) 0 * Os_TE_449561 Os_TE_449549 Chr3 17087746 17087747 + ORSgTEMT00700017 386 0.0003 (1/2892) 0 * * Os_TE_449513 Chr3 17074600 17074599 - RETRO1_LTR 8314 0.0366 (108/2951) 0 * * Os_TE_449492 Chr3 17067554 17067553 + RETRO2_LTR 12874 0.0221 (66/2988) 0 * * Os_TE_449448 Chr3 17051697 17051698 + AMYLTP 383 0.0007 (2/2939) 0 * Os_TE_449447 Os_TE_449447 Chr3 17051689 17051688 - AMYLTP 383 0.0007 (2/2942) 0 * Os_TE_449448 Os_TE_449445 Chr3 17051100 17051101 + ORSgTEMT00502094 140 0.0383 (112/2925) 0 * * Os_TE_449439 Chr3 17048191 17048192 - ORSiTERTOOT00402 2660 0.0007 (2/2987) 0 * Os_TE_449438 Os_TE_449438 Chr3 17048187 17048186 + ORSiTERTOOT00402 2660 0.0007 (2/2988) 0 * Os_TE_449439 Os_TE_449427 Chr3 17046234 17046235 - TNR2A 152 0.0281 (78/2775) 0 * * Os_TE_449423 Chr3 17044922 17044921 + RPO_OS 1983 0.0264 (79/2994) 0 * Os_TE_449422 Os_TE_449422 Chr3 17044921 17044922 - RPO_OS 1983 0.0274 (82/2996) 0 * Os_TE_449423 Os_TE_449413 Chr3 17037457 17037458 + Cassandra_OS-LTR 764 0.0003 (1/2913) 0 * * Os_TE_449374 Chr3 17020014 17020015 - SZ-5LTR 1223 0.0264 (79/2995) 0 * Os_TE_449373 Os_TE_449373 Chr3 17020010 17020009 + COPIA1-LTR_OS 9292 0.0254 (76/2996) 0 * Os_TE_449374 Os_TE_449370 Chr3 17014129 17014130 - RETRO2_LTR 12874 0.1215 (355/2923) 0 * * Os_TE_449359 Chr3 17008123 17008124 - RIREX_LTR 8828 0.0010 (3/2989) 0 * Os_TE_449358 Os_TE_449358 Chr3 17008119 17008118 + RIREX_LTR 8828 0.0010 (3/2988) 0 * Os_TE_449359 Os_TE_449332 Chr3 17001974 17001975 - SZ-9LTR 965 0.0271 (81/2987) 0 * Os_TE_449331 Os_TE_449331 Chr3 17001970 17001969 + SZ-9LTR 965 0.0264 (79/2988) 0 * Os_TE_449332 Os_TE_449314 Chr3 16993457 16993456 - TRUNCATOR2_LTR 2904 0.0949 (277/2920) 0 * * Os_TE_449259 Chr3 16963485 16963484 - ORSgTEMT00501568 147 0.0003 (1/2949) 0 * * Os_TE_449219 Chr3 16945705 16945706 - OSTE21 1271 0.0003 (1/2971) 0 * * Os_TE_449201 Chr3 16936841 16936842 - RIRE2_LTR 11306 0.0164 (48/2919) 0 * Os_TE_449200 Os_TE_449200 Chr3 16936837 16936836 + RIRE2_LTR 11306 0.0168 (49/2923) 0 * Os_TE_449201 Os_TE_449162 Chr3 16924055 16924056 - COPIO_LTR 11693 0.0017 (5/2985) 0 * Os_TE_449161 Os_TE_449161 Chr3 16924051 16924050 + COPIO_LTR 11693 0.0017 (5/2988) 0 * Os_TE_449162 Os_TE_449028 Chr3 16862267 16862266 + ORSgTETNOOT01834 251 0.0110 (32/2922) 0 * * Os_TE_449026 Chr3 16861763 16861762 + MUDRN5_OS 374 0.0021 (6/2925) 0 * Os_TE_449025 Os_TE_449025 Chr3 16861753 16861754 - ORSgTEMT00700002 381 0.0024 (7/2909) 0 * Os_TE_449026 Os_TE_449022 Chr3 16858396 16858395 + SEVERIN-2 1952 0.0003 (1/2946) 0 * * Os_TE_448973 Chr3 16839285 16839286 + TESS 244 0.0184 (55/2995) 0 * * Os_TE_448966 Chr3 16835754 16835755 + RIREX_LTR 8828 0.0003 (1/2996) 0 * Os_TE_448965 Os_TE_448965 Chr3 16835750 16835749 - RIREX_LTR 8828 0.0003 (1/2998) 0 * Os_TE_448966 Os_TE_448963 Chr3 16834921 16834922 - RIRE3_LTR 12054 0.0737 (215/2919) 0 * Os_TE_448962 Os_TE_448962 Chr3 16834917 16834916 + RIRE3_LTR 12054 0.0909 (271/2982) 0 * Os_TE_448963 Os_TE_448892 Chr3 16811213 16811214 + COPIA2-LTR_OS 6433 0.0017 (5/2988) 0 * Os_TE_448891 Os_TE_448891 Chr3 16811209 16811208 - COPIA2-LTR_OS 6433 0.0019 (5/2680) 0 * Os_TE_448892 Os_TE_448853 Chr3 16790871 16790872 - ORSiTETNOOT00134 607 0.0003 (1/2973) 0 * Os_TE_448852 Os_TE_448852 Chr3 16790864 16790863 + TWIF 586 0.0003 (1/2958) 0 * Os_TE_448853 Os_TE_448836 Chr3 16784028 16784029 - TRUNCATOR2_LTR 2904 0.0761 (228/2998) 0 * Os_TE_448835 Os_TE_448835 Chr3 16784024 16784023 + ORSiCMCM00100019 2717 0.0747 (224/2997) 0 * Os_TE_448836 Os_TE_448776 Chr3 16767547 16767548 - SZ-5LTR 1223 0.3829 (1078/2815) 0 * * Os_TE_448760 Chr3 16763899 16763900 - ORSiTETNOOT00216 3569 0.0013 (4/2985) 0 * Os_TE_448759 Os_TE_448759 Chr3 16763892 16763891 + TWIFBIG 3567 0.0017 (5/2987) 0 * Os_TE_448760 Os_TE_448727 Chr3 16750500 16750501 + MPING 430 0.0003 (1/2985) 0 * Os_TE_448726 Os_TE_448726 Chr3 16750498 16750497 - MPING 430 0.0003 (1/2991) 0 * Os_TE_448727 Os_TE_448725 Chr3 16750156 16750155 - ORSiTEMT01300001 950 0.0003 (1/2995) 0 * * Os_TE_448692 Chr3 16734973 16734974 - COPIA2-LTR_OS 6433 0.0089 (21/2354) 0 * * Os_TE_448687 Chr3 16734087 16734088 - INDITTO 263 0.0003 (1/2983) -1 * Os_TE_448686 Os_TE_448686 Chr3 16734085 16734084 + INDITTO 263 0.0003 (1/2984) 0 * Os_TE_448687 Os_TE_448677 Chr3 16732691 16732692 - NDNA2TNA_OS 346 0.1551 (458/2953) 0 * * Os_TE_448629 Chr3 16717599 16717600 + SZ-21LTR 1236 0.0004 (1/2792) 0 * * Os_TE_448626 Chr3 16716877 16716878 + COPIA2-LTR_OS 6433 0.0003 (1/2986) 0 * Os_TE_448625 Os_TE_448625 Chr3 16716873 16716872 - COPIA2-LTR_OS 6433 0.0003 (1/2986) 0 * Os_TE_448626 Os_TE_448595 Chr3 16708153 16708154 + COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_448594 Os_TE_448594 Chr3 16708149 16708148 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_448595 Os_TE_448593 Chr3 16707737 16707738 - INDITTO 263 0.0616 (183/2972) 0 * Os_TE_448592 Os_TE_448592 Chr3 16707735 16707734 + INDITTO 263 0.0641 (189/2950) 0 * Os_TE_448593 Os_TE_448579 Chr3 16704666 16704667 - SC-3_LTR 5748 0.0218 (62/2840) 0 * * Os_TE_448570 Chr3 16695893 16695894 - COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_448569 Os_TE_448569 Chr3 16695889 16695888 + COPI2_LTR 4733 0.0003 (1/2999) 0 * Os_TE_448570 Os_TE_448547 Chr3 16688117 16688116 + ORSgTEMT00501027 149 0.0004 (1/2363) 0 * * Os_TE_448532 Chr3 16672295 16672294 - TRUNCATOR2_LTR 2904 0.0010 (3/2997) 0 * * Os_TE_448524 Chr3 16667925 16667924 - ENSPM4_OS 11610 0.0644 (191/2964) 0 * * Os_TE_448519 Chr3 16664027 16664028 + MPING 430 0.0020 (6/2991) 0 * Os_TE_448518 Os_TE_448518 Chr3 16664025 16664024 - MPING 430 0.0020 (6/2992) 0 * Os_TE_448519 Os_TE_448514 Chr3 16662542 16662543 - COPIA2-LTR_OS 6433 0.0007 (2/2995) 0 * Os_TE_448513 Os_TE_448513 Chr3 16662538 16662537 + COPIA2-LTR_OS 6433 0.0007 (2/2995) 0 * Os_TE_448514 Os_TE_448512 Chr3 16661663 16661662 - ORSiTERTOOT00183 3603 0.0003 (1/2953) 0 * * Os_TE_448503 Chr3 16658020 16658021 - ORSgTEMT02400179 221 0.0519 (155/2987) 0 * Os_TE_448502 Os_TE_448502 Chr3 16658019 16658018 - TYPEM 227 0.0529 (158/2986) 0 * Os_TE_448503 Os_TE_448455 Chr3 16637903 16637904 + SZ-52_LTR 13107 0.0286 (85/2975) 0 * Os_TE_448454 Os_TE_448454 Chr3 16637899 16637898 - SZ-52_LTR 13107 0.0285 (85/2982) 0 * Os_TE_448455 Os_TE_448443 Chr3 16634660 16634661 + RIREX_LTR 8828 0.0004 (1/2789) 0 * Os_TE_448442 Os_TE_448442 Chr3 16634656 16634655 - RIREX_LTR 8828 0.0004 (1/2230) 0 * Os_TE_448443 Os_TE_448299 Chr3 16581838 16581839 - SC-3_LTR 5748 0.0007 (2/2993) 0 * Os_TE_448298 Os_TE_448298 Chr3 16581834 16581833 + ORSiTERTOOT00296 5553 0.0007 (2/2993) 0 * Os_TE_448299 Os_TE_448296 Chr3 16579476 16579477 - RETRO2_LTR 12874 0.0270 (81/2997) 0 * Os_TE_448295 Os_TE_448295 Chr3 16579472 16579471 + RETRO2_LTR 12874 0.0274 (82/2996) 0 * Os_TE_448296 Os_TE_448294 Chr3 16579209 16579210 - RIREX_LTR 8828 0.0258 (77/2986) 0 * Os_TE_448293 Os_TE_448293 Chr3 16579205 16579204 + RIREX_LTR 8828 0.0271 (81/2992) 0 * Os_TE_448294 Os_TE_448281 Chr3 16572921 16572922 - F524 291 0.0003 (1/2989) 0 * * Os_TE_448246 Chr3 16561581 16561582 - SZ-67LTR 1540 0.0017 (5/2974) 0 * Os_TE_448245 Os_TE_448245 Chr3 16561577 16561576 + SZ-67LTR 1540 0.0017 (5/2969) 0 * Os_TE_448246 Os_TE_448218 Chr3 16553346 16553347 - ORSgTEMT01600223 220 0.0004 (1/2639) 0 * * Os_TE_448217 Chr3 16552610 16552611 - INDITTO 263 0.0013 (4/2993) 0 * Os_TE_448216 Os_TE_448216 Chr3 16552608 16552607 + INDITTO 263 0.0013 (4/2988) 0 * Os_TE_448217 Os_TE_448215 Chr3 16552415 16552416 - RIREX_LTR 8828 0.0003 (1/2970) 0 * Os_TE_448214 Os_TE_448214 Chr3 16552411 16552410 + RIREX_LTR 8828 0.0003 (1/2970) 0 * Os_TE_448215 Os_TE_448213 Chr3 16551733 16551734 - COPIA2-LTR_OS 6433 0.0003 (1/2969) 0 * Os_TE_448212 Os_TE_448212 Chr3 16551729 16551728 + COPIA2-LTR_OS 6433 0.0003 (1/2974) 0 * Os_TE_448213 Os_TE_448211 Chr3 16551637 16551638 - RIREX_LTR 8828 0.0110 (32/2916) 0 * Os_TE_448210 Os_TE_448210 Chr3 16551633 16551632 + RIREX_LTR 8828 0.0111 (33/2960) 0 * Os_TE_448211 Os_TE_448207 Chr3 16548808 16543033 - RIRE5-LTR_OS 6427 0.2015 (596/2958) 1 Intact Os_TE_448195 Os_TE_448195 Chr3 16531485 16548808 + RIRE5-LTR_OS 6427 0.2035 (598/2939) 1 Intact Os_TE_448207 Os_TE_448194 Chr3 16531448 16531449 - F569 228 0.0954 (282/2957) 0 * Os_TE_448193 Os_TE_448193 Chr3 16531446 16531445 + F569 228 0.0892 (249/2793) 0 * Os_TE_448194 Os_TE_448192 Chr3 16531343 16531342 + ORSgTEMT01701591 154 0.1311 (390/2975) 0 * Os_TE_448191 Os_TE_448191 Chr3 16531340 16531341 + ORSgTEMT01702111 154 0.1314 (391/2975) 0 * Os_TE_448192 Os_TE_448190 Chr3 16529771 16529772 - RIREX_LTR 8828 0.0196 (57/2903) 0 * Os_TE_448189 Os_TE_448189 Chr3 16529767 16529766 + RIREX_LTR 8828 0.0200 (58/2895) 0 * Os_TE_448190 Os_TE_448145 Chr3 16510515 16514117 - SZ-40LTR 2465 0.8821 (2633/2985) 1 Intact * Os_TE_448142 Chr3 16510220 16510219 + COPIA2-LTR_OS 6433 0.1309 (392/2994) 0 * * Os_TE_448129 Chr3 16506396 16506395 - COPIA2-LTR_OS 6433 0.0004 (1/2619) 0 * * Os_TE_448109 Chr3 16500729 16500730 - TRUNCATOR 2918 0.0258 (66/2555) 0 * * Os_TE_448052 Chr3 16479494 16479495 + ORSiTERTOOT00226 792 0.0004 (1/2575) 0 * Os_TE_448051 Os_TE_448051 Chr3 16479490 16479489 - SZ-22_LTR 4403 0.0004 (1/2582) 0 * Os_TE_448052 Os_TE_448032 Chr3 16464793 16464792 - TRUNCATOR 2918 0.0010 (3/2944) 0 * Os_TE_448031 Os_TE_448031 Chr3 16464792 16464793 + TRUNCATOR 2918 0.0010 (3/2941) 0 * Os_TE_448032 Os_TE_448029 Chr3 16464565 16464564 + SPMLIKE 10989 0.0281 (82/2917) 0 * * Os_TE_448011 Chr3 16460818 16460817 + TRUNCATOR 2918 0.4228 (1188/2810) 0 * * Os_TE_448005 Chr3 16458679 16458680 + ENSPM6_OS 9815 0.0881 (252/2860) 0 * * Os_TE_447998 Chr3 16456048 16456049 - NDNA1TNA_OS 334 0.2868 (758/2643) 0.67 * * Os_TE_447990 Chr3 16454552 16454551 - MPING 430 0.0004 (1/2592) 0 * * Os_TE_447978 Chr3 16450649 16450650 - ORSiTERTOOT00441 4741 0.0194 (58/2996) 0 * * Os_TE_447961 Chr3 16448147 16448148 - ORSiTETNOOT00107 906 0.1127 (330/2928) 0 * * Os_TE_447910 Chr3 16433700 16433701 - CACTA-N 987 0.0003 (1/2982) 0 * * Os_TE_447908 Chr3 16432492 16432493 + ORSgTEMT01601591 242 0.0010 (3/2983) 0 * * Os_TE_447901 Chr3 16427758 16427759 + ORSiTERTOOT00296 5553 0.0003 (1/2973) 0 * Os_TE_447900 Os_TE_447900 Chr3 16427754 16427753 - SC-3_LTR 5748 0.0003 (1/2971) 0 * Os_TE_447901 Os_TE_447892 Chr3 16422873 16422874 - SC-3_LTR 5748 0.0017 (5/2995) 0 * Os_TE_447891 Os_TE_447891 Chr3 16422869 16422868 + ORSiTERTOOT00296 5553 0.0017 (5/2992) 0 * Os_TE_447892 Os_TE_447868 Chr3 16414479 16414478 - TRUNCATOR 2918 0.0010 (3/2976) 0 * * Os_TE_447866 Chr3 16412415 16412416 - TRUNCATOR2_LTR 2904 0.0010 (3/2989) 0 * Os_TE_447865 Os_TE_447865 Chr3 16412411 16412410 + ORSiTERTOOT00028 8600 0.0027 (3/1129) 0 * Os_TE_447866 Os_TE_447848 Chr3 16406951 16406950 - COPIA2-LTR_OS 6433 0.0003 (1/2964) 0 * * Os_TE_447833 Chr3 16398688 16398934 + STOWAWAY51_OS 246 0.7759 (1115/1437) 0.8 Intact * Os_TE_447809 Chr3 16382891 16382890 - ORSgTEMT02400246 177 0.0013 (4/2987) 0 * * Os_TE_447801 Chr3 16371896 16371895 - SEVERIN-2 1952 0.0014 (4/2919) 0 * * Os_TE_447791 Chr3 16368680 16368681 - SZ-67LTR 1540 0.1103 (277/2512) 0 * * Os_TE_447750 Chr3 16359485 16359484 - NDNA2TNA_OS 346 0.0334 (100/2991) 0 * * Os_TE_447657 Chr3 16325933 16325934 - ORSgTEMT02400179 221 0.0003 (1/2934) 0 * Os_TE_447656 Os_TE_447656 Chr3 16325932 16325931 - TYPEM 227 0.0003 (1/2935) 0 * Os_TE_447657 Os_TE_447646 Chr3 16324010 16324011 + MPING 430 0.0068 (20/2942) 0 * Os_TE_447645 Os_TE_447645 Chr3 16324008 16324007 - MPING 430 0.0066 (19/2885) 0 * Os_TE_447646 Os_TE_447643 Chr3 16322453 16322452 - TRUNCATOR 2918 0.0015 (3/1938) 0 * * Os_TE_447619 Chr3 16316601 16316600 - ORSgTEMT01602310 229 0.0007 (2/2763) 0 * * Os_TE_447600 Chr3 16314563 16314562 + STOWAWAY51_OS 246 0.0010 (3/2967) 0 * Os_TE_447599 Os_TE_447599 Chr3 16314557 16314558 - STOWAWAY51_OS 246 0.0010 (3/2947) 0 * Os_TE_447600 Os_TE_447582 Chr3 16310231 16308872 + OSTE33 1012 0.3008 (836/2779) 1 Intact Os_TE_447579 Os_TE_447579 Chr3 16308872 16310240 + OSTE33 1012 0.2563 (675/2634) -1 Intact Os_TE_447582 Os_TE_447575 Chr3 16305595 16305596 - ORSgTEMT02400179 221 0.0337 (100/2969) 0 * Os_TE_447574 Os_TE_447574 Chr3 16305594 16305593 - TYPEM 227 0.0334 (99/2968) 0 * Os_TE_447575 Os_TE_447557 Chr3 16293654 16293655 + ORSiCMCM00100019 2717 0.0007 (2/2982) 0 * Os_TE_447556 Os_TE_447556 Chr3 16293650 16293649 - TRUNCATOR2_LTR 2904 0.0007 (2/2980) 0 * Os_TE_447557 Os_TE_447540 Chr3 16288567 16288566 - SC-3_LTR 5748 0.0003 (1/2991) 0 * * Os_TE_447512 Chr3 16274592 16274178 + ORSgTEMT00300122 416 0.2703 (806/2982) 1 Intact * Os_TE_447509 Chr3 16274156 16274157 - ORSgTEMT02400092 225 0.2486 (744/2993) 0 * * Os_TE_447486 Chr3 16262832 16262831 - SEVERIN-2 1952 0.0774 (231/2985) 0 * Os_TE_447485 Os_TE_447485 Chr3 16262831 16262832 + SEVERIN-2 1952 0.0764 (228/2986) 0 * Os_TE_447486 Os_TE_447469 Chr3 16258936 16258937 - RIRE3_LTR 12054 0.0010 (3/2998) 0 * * Os_TE_447466 Chr3 16258420 16258421 + TRUNCATOR 2918 0.0013 (4/2996) 0 * * Os_TE_447463 Chr3 16257968 16257969 + COPIA2-LTR_OS 6433 0.0007 (2/2997) 0 * Os_TE_447462 Os_TE_447462 Chr3 16257964 16257963 - COPIA2-LTR_OS 6433 0.0007 (2/2990) 0 * Os_TE_447463 Os_TE_447446 Chr3 16252563 16252562 - RETROSAT2LTR 12796 0.0003 (1/2994) 0 * * Os_TE_447444 Chr3 16251482 16251483 - COPIA2-LTR_OS 6433 0.0007 (2/2989) 0 * Os_TE_447443 Os_TE_447443 Chr3 16251478 16251477 + COPIA2-LTR_OS 6433 0.0007 (2/2990) 0 * Os_TE_447444 Os_TE_447438 Chr3 16250881 16250880 - ORSgTEMT01600639 228 0.0024 (5/2112) 0 * Os_TE_447437 Os_TE_447437 Chr3 16250878 16250879 - ORSgTEMT01601208 238 0.0015 (4/2627) 0 * Os_TE_447438 Os_TE_447433 Chr3 16248112 16248111 + STOWAWAY51_OS 246 0.0021 (6/2862) 0 * Os_TE_447432 Os_TE_447432 Chr3 16248106 16248107 + ORSgTEMT01601591 242 0.0027 (6/2233) 0 * Os_TE_447433 Os_TE_447403 Chr3 16228239 16228238 + DITAILA 257 0.4829 (1424/2949) 0 * * Os_TE_447399 Chr3 16226788 16226789 - MPING 430 0.0006 (1/1575) 0 * Os_TE_447398 Os_TE_447398 Chr3 16226786 16226785 + MPING 430 0.0006 (1/1574) 0 * Os_TE_447399 Os_TE_447386 Chr3 16223778 16224107 + ORSgTEMT00100828 349 0.5131 (1507/2937) 1 Intact * Os_TE_447374 Chr3 16222732 16223169 + ORSgTEMT05200013 281 0.5478 (1576/2877) 1 Intact * Os_TE_447369 Chr3 16221984 16221983 - ORSgTETN00200001 10994 0.0007 (1/1520) 0 * * Os_TE_447364 Chr3 16217211 16217212 - TREP215 239 0.4909 (1452/2958) 0 * * Os_TE_447363 Chr3 16216703 16216702 - MERMITE18E 1528 0.4992 (1487/2979) 0 * * Os_TE_447362 Chr3 16216419 16216320 - ZM13-2_OS 108 0.5310 (1561/2940) 1 Intact Os_TE_447360 Os_TE_447360 Chr3 16216290 16216387 + ORSiTETNOOT00011 98 0.5171 (1531/2961) 1 Intact Os_TE_447362 Os_TE_447349 Chr3 16213848 16213847 + COPIA2-LTR_OS 6433 0.0007 (2/2870) 0 * * Os_TE_447335 Chr3 16211016 16211017 - COPIA2-LTR_OS 6433 0.0003 (1/2894) 0 * Os_TE_447334 Os_TE_447334 Chr3 16211012 16211011 + COPIA2-LTR_OS 6433 0.0003 (1/2900) 0 * Os_TE_447335 Os_TE_447277 Chr3 16178545 16178546 + TWIFB1 3737 0.0003 (1/2990) 0 * * Os_TE_447257 Chr3 16175741 16175742 - ORSgTEMT01601432 239 0.0011 (3/2823) 0 * * Os_TE_447256 Chr3 16175100 16175101 - OSTE33 1012 0.0740 (220/2973) 0 * * Os_TE_447254 Chr3 16174682 16174681 + ORSgTEMT01601591 242 0.0003 (1/2957) 0 * Os_TE_447253 Os_TE_447253 Chr3 16174676 16174677 + STOWAWAY51_OS 246 0.0003 (1/2926) 0 * Os_TE_447254 Os_TE_447244 Chr3 16173319 16173320 - MPING 430 0.0003 (1/2914) 0 * Os_TE_447243 Os_TE_447243 Chr3 16173317 16173316 + MPING 430 0.0003 (1/2904) 0 * Os_TE_447244 Os_TE_447234 Chr3 16171037 16171038 + RIREX_LTR 8828 0.0007 (2/2992) 0 * Os_TE_447233 Os_TE_447233 Chr3 16171033 16171032 - RIREX_LTR 8828 0.0007 (2/2993) 0 * Os_TE_447234 Os_TE_447222 Chr3 16168747 16168748 - RIREX_LTR 8828 0.0040 (12/2998) 0 * Os_TE_447221 Os_TE_447221 Chr3 16168743 16168742 + RIREX_LTR 8828 0.0040 (12/2999) 0 * Os_TE_447222 Os_TE_447160 Chr3 16142638 16142639 + ORSgTETNOOT00908 242 0.0017 (5/2972) 0 * * Os_TE_447146 Chr3 16139593 16139594 - INDITTO 263 0.0007 (2/2987) 0 * Os_TE_447145 Os_TE_447145 Chr3 16139591 16139590 + INDITTO 263 0.0007 (2/2974) 0 * Os_TE_447146 Os_TE_447144 Chr3 16138738 16138739 - ORSiTERTOOT00132 693 0.0007 (2/2849) 0 * * Os_TE_447141 Chr3 16137479 16137478 - STOWAWAY51_OS 246 0.0003 (1/2990) 0 * Os_TE_447140 Os_TE_447140 Chr3 16137473 16137474 + STOWAWAY51_OS 246 0.0003 (1/2991) 0 * Os_TE_447141 Os_TE_447136 Chr3 16135399 16135398 - TYPEM 227 0.2480 (717/2891) 0 * Os_TE_447135 Os_TE_447135 Chr3 16135397 16135398 - ORSgTEMT02400248 224 0.2643 (781/2955) 0 * Os_TE_447136 Os_TE_447110 Chr3 16124912 16124913 + ORSgTEMT00700017 386 0.0003 (1/2947) 0 * * Os_TE_447090 Chr3 16122262 16122261 + ORSiTERTOOT00226 792 0.0003 (1/2994) 0 * * Os_TE_447089 Chr3 16122169 16122170 + GYPSY-A_LTR 8951 0.0003 (1/2913) 0 * Os_TE_447088 Os_TE_447088 Chr3 16122165 16122164 - GYPSY-A_LTR 8951 0.0003 (1/2936) 0 * Os_TE_447089 Os_TE_447078 Chr3 16116542 16116543 - ORSgTEMT01400033 210 0.0024 (7/2922) 0 * * Os_TE_447052 Chr3 16110496 16110495 + ORSiTERTOOT00034 791 0.0027 (8/2962) 0 * * Os_TE_447000 Chr3 16090043 16090042 - TRUNCATOR 2918 0.0003 (1/2971) 0 * Os_TE_446999 Os_TE_446999 Chr3 16090042 16090043 + TRUNCATOR 2918 0.0003 (1/2981) 0 * Os_TE_447000 Os_TE_446980 Chr3 16082069 16082068 + NDNA1TNA_OS 334 0.0020 (6/2989) 0 * * Os_TE_446972 Chr3 16074430 16074431 + ORSgTEMT01700715 134 0.0017 (5/2989) 0 * * Os_TE_446968 Chr3 16070338 16070339 - JOUZHENA 607 0.0014 (4/2866) 0 * Os_TE_446967 Os_TE_446967 Chr3 16070331 16070330 + JOUZHENA 607 0.0020 (6/2986) 0 * Os_TE_446968 Os_TE_446953 Chr3 16060732 16060470 - INDITTO 263 0.4533 (626/1381) 1 Intact Os_TE_446952 Os_TE_446952 Chr3 16060470 16060732 + INDITTO 263 0.2097 (618/2947) 1 Intact Os_TE_446953 Os_TE_446948 Chr3 16059315 16059316 + RIREX_LTR 8828 0.0013 (4/2995) 0 * Os_TE_446947 Os_TE_446947 Chr3 16059311 16059310 - RIREX_LTR 8828 0.0013 (4/2985) 0 * Os_TE_446948 Os_TE_446938 Chr3 16058458 16058459 - MuDR4_OS 7610 0.0020 (6/2988) 0 * Os_TE_446937 Os_TE_446937 Chr3 16058456 16058455 - MuDR4_OS 7610 0.0020 (6/2985) 0 * Os_TE_446938 Os_TE_446913 Chr3 16048417 16048418 + MUDRN5_OS 374 0.0003 (1/2945) 0 * * Os_TE_446903 Chr3 16044438 16044439 + ORSiTERTOOT00296 5553 0.0003 (1/2992) 0 * * Os_TE_446873 Chr3 16025329 16025330 - RIREX_LTR 8828 0.0003 (1/2867) 0 * Os_TE_446872 Os_TE_446872 Chr3 16025325 16025324 + RIREX_LTR 8828 0.0004 (1/2834) 0 * Os_TE_446873 Os_TE_446865 Chr3 16021187 16021188 - COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_446864 Os_TE_446864 Chr3 16021183 16021182 + COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_446865 Os_TE_446843 Chr3 16000735 16000736 - HARB-1_OS 5166 0.0007 (2/2968) 0 * Os_TE_446842 Os_TE_446842 Chr3 16000733 16000732 + MPING 430 0.0013 (4/2963) 0 * Os_TE_446843 Os_TE_446836 Chr3 15998051 15998052 + MPING 430 0.0003 (1/2956) 0 * Os_TE_446835 Os_TE_446835 Chr3 15998049 15998048 - MPING 430 0.0003 (1/2952) 0 * Os_TE_446836 Os_TE_446825 Chr3 15994132 15993937 + ORSgTEMT02000030 197 0.8368 (2497/2984) 1 Intact * Os_TE_446736 Chr3 15971892 15971893 - TYPEU 362 0.0003 (1/2972) 0 * * Os_TE_446734 Chr3 15970936 15970937 + ORSgTEMT00600124 361 0.0010 (3/2991) 0 * Os_TE_446733 Os_TE_446733 Chr3 15970934 15970933 + CASTAWAY 364 0.0010 (3/2989) 0 * Os_TE_446734 Os_TE_446706 Chr3 15956686 15956685 + ORSiTERTOOT00088 856 0.0004 (1/2779) 0 * * Os_TE_446686 Chr3 15951294 15951293 + TRUNCATOR 2918 0.0094 (7/742) 0 * Os_TE_446685 Os_TE_446685 Chr3 15951293 15951294 - TRUNCATOR 2918 0.0081 (6/737) 0 * Os_TE_446686 Os_TE_446684 Chr3 15950604 15950603 + TRUNCATOR 2918 0.0089 (6/677) 0 * Os_TE_446683 Os_TE_446683 Chr3 15950603 15950604 - TRUNCATOR 2918 0.0045 (3/668) 0 * Os_TE_446684 Os_TE_446671 Chr3 15939196 15939195 + COPI2_LTR 4733 0.0003 (1/2985) 0 * * Os_TE_446669 Chr3 15937699 15937700 + ORSgTERT00200633 1080 0.0008 (2/2497) 0 * * Os_TE_446634 Chr3 15929108 15929107 + YOUREN 286 0.0004 (1/2695) 0 * * Os_TE_446592 Chr3 15920644 15920645 + ORSgTEMT01601591 242 0.0018 (5/2703) 0 * * Os_TE_446591 Chr3 15920594 15920593 - MPING 430 0.0549 (151/2748) 0 * * Os_TE_446590 Chr3 15920586 15920587 + MPING 430 0.0555 (152/2737) -1 * Os_TE_446589 Os_TE_446589 Chr3 15920584 15920583 - MPING 430 0.0522 (144/2757) -1 * Os_TE_446590 Os_TE_446576 Chr3 15917803 15917804 - HARB-1_OS 5166 0.0057 (17/2978) 0 * Os_TE_446575 Os_TE_446575 Chr3 15917801 15917800 + HARB-1_OS 5166 0.0057 (17/2978) 0 * Os_TE_446576 Os_TE_446549 Chr3 15909862 15909863 + ORSiTERTOOT00296 5553 0.0003 (1/2991) 0 * Os_TE_446548 Os_TE_446548 Chr3 15909858 15909857 - SC-3_LTR 5748 0.0003 (1/2989) 0 * Os_TE_446549 Os_TE_446511 Chr3 15899467 15899468 + HARB-1_OS 5166 0.0069 (17/2475) 0 * Os_TE_446510 Os_TE_446510 Chr3 15899465 15899464 - HARB-1_OS 5166 0.0066 (18/2722) 0 * Os_TE_446511 Os_TE_446500 Chr3 15897330 15897329 - GYPSY-A_LTR 8951 0.0037 (11/2985) 0 * * Os_TE_446474 Chr3 15884052 15884051 + ORSgTEMT00700017 386 0.0003 (1/2958) 0 * * Os_TE_446444 Chr3 15871328 15871329 - MPING 430 0.0020 (6/2954) 0 * Os_TE_446443 Os_TE_446443 Chr3 15871326 15871325 + MPING 430 0.0055 (6/1090) 0 * Os_TE_446444 Os_TE_446442 Chr3 15870415 15870414 + ORSiTERTOOT00027 10853 0.0007 (2/2975) 0 * * Os_TE_446441 Chr3 15869048 15869049 - RIRE3_LTR 12054 0.0017 (5/2994) 0 * * Os_TE_446437 Chr3 15867481 15867482 - COPIA2-LTR_OS 6433 0.0007 (2/2965) 0 * Os_TE_446436 Os_TE_446436 Chr3 15867477 15867476 + COPIA2-LTR_OS 6433 0.0003 (1/2963) 0 * Os_TE_446437 Os_TE_446428 Chr3 15863676 15863677 - COPIA2-LTR_OS 6433 0.6526 (1952/2991) 0 * Os_TE_446427 Os_TE_446427 Chr3 15863672 15863671 + COPIA2-LTR_OS 6433 0.6516 (1949/2991) 0 * Os_TE_446428 Os_TE_446394 Chr3 15854229 15854230 - ORSgTERT00201216 11284 0.0020 (6/2969) 0 * Os_TE_446393 Os_TE_446393 Chr3 15854225 15854224 - RIRE2_LTR 11306 0.0017 (5/2977) 0 * Os_TE_446394 Os_TE_446362 Chr3 15847519 15847518 + ORSiTERTOOT00028 8600 0.6498 (1930/2970) 0 * * Os_TE_446288 Chr3 15826513 15826657 - ORSgTEMT00500351 146 0.3205 (914/2852) 1 Intact * Os_TE_446285 Chr3 15824657 15824321 + ORSgTEMT00500512 153 0.3005 (893/2972) 1 Intact * Os_TE_446278 Chr3 15824014 15818056 + SEVERIN-2 1952 0.3017 (895/2967) 1 Intact Os_TE_446259 Os_TE_446259 Chr3 15818056 15823993 - SEVERIN-2 1952 0.3366 (867/2576) 1 Intact Os_TE_446278 Os_TE_446251 Chr3 15815118 15815117 - ORSgTETN00200001 10994 0.0003 (1/2911) 0 * * Os_TE_446228 Chr3 15809692 15809691 + ORSgTETNOOT02213 263 0.5940 (1277/2150) 0.12 * * Os_TE_446227 Chr3 15809640 15809641 + ORSiTETN00200006 8216 0.0023 (7/2989) 0 * Os_TE_446226 Os_TE_446226 Chr3 15809638 15809637 - ORSiTETN00200006 8216 0.0023 (7/2984) 0 * Os_TE_446227 Os_TE_446225 Chr3 15809526 15809527 - SZ-9LTR 965 0.0546 (163/2987) 0 * * Os_TE_446220 Chr3 15808342 15808343 - COPIA1-LTR_OS 9292 0.7281 (2000/2747) 0 * * Os_TE_446216 Chr3 15807777 15807932 + ORSgTEMT01700429 128 0.3243 (863/2661) 1 Intact * Os_TE_446213 Chr3 15803948 15803949 + CPSC2_LTR 5202 0.0010 (3/2986) 0 * * Os_TE_446201 Chr3 15802090 15802089 - UNIQUE 158 0.7051 (2097/2974) 0 * Os_TE_446200 Os_TE_446200 Chr3 15802089 15802090 + ORSiTEMT03300001 145 0.7102 (2122/2988) 0 * Os_TE_446201 Os_TE_446198 Chr3 15801574 15801336 - ORSgTEMT01600662 238 0.2983 (885/2967) 1 Intact * Os_TE_446190 Chr3 15794830 15794667 + WUWU 113 0.3020 (877/2904) 1 Intact Os_TE_446188 Os_TE_446188 Chr3 15794667 15794830 + WUWU 113 0.3065 (890/2904) 1 Intact Os_TE_446190 Os_TE_446184 Chr3 15793112 15793111 + COPIA2-LTR_OS 6433 0.0004 (1/2703) 0 * * Os_TE_446182 Chr3 15791898 15791899 + ORSgTEMT01602413 239 0.0017 (5/2978) 0 * Os_TE_446181 Os_TE_446181 Chr3 15791837 15791836 - DITTO-2 235 0.0024 (7/2973) 0 * Os_TE_446182 Os_TE_446175 Chr3 15790591 15790592 + SEVERIN-2 1952 0.0022 (6/2755) 0 * * Os_TE_446158 Chr3 15780893 15780892 + STOWAWAY51_OS 246 0.0027 (8/2989) 0 * * Os_TE_446157 Chr3 15780889 15780890 - ORSgTETNOOT00194 259 0.7052 (2096/2972) 0 * * Os_TE_446155 Chr3 15780147 15780148 + COPI1_LTR 4721 0.0023 (7/2986) 0 * Os_TE_446154 Os_TE_446154 Chr3 15780143 15780142 - SZ-25LTR 330 0.0024 (7/2978) 0 * Os_TE_446155 Os_TE_446149 Chr3 15778333 15778095 - ORSgTEMT01601493 303 0.3211 (960/2990) 1 Intact Os_TE_446147 Os_TE_446147 Chr3 15778095 15778326 + ORSgTEMT01601983 238 0.3196 (949/2969) 1 Intact Os_TE_446149 Os_TE_446114 Chr3 15769067 15769066 - ORSgTEMT01601432 239 0.6274 (1559/2485) 0 * Os_TE_446113 Os_TE_446113 Chr3 15769059 15769060 - ORSgTEMT01601432 239 0.6891 (2024/2937) 0 * Os_TE_446114 Os_TE_446112 Chr3 15768696 15768697 + COPIA2-LTR_OS 6433 0.0007 (2/2984) 0 * * Os_TE_446108 Chr3 15767979 15767978 + SETARIA2 1142 0.6964 (2083/2991) 0 * * Os_TE_446058 Chr3 15734565 15734566 + MPING 430 0.0003 (1/2939) 0 * Os_TE_446057 Os_TE_446057 Chr3 15734563 15734562 - MPING 430 0.0003 (1/2927) 0 * Os_TE_446058 Os_TE_446045 Chr3 15728410 15728411 - SZ-40LTR 2465 0.0003 (1/2990) 0 * * Os_TE_446026 Chr3 15718786 15718787 + COPIA2-LTR_OS 6433 0.0020 (6/2982) 0 * Os_TE_446025 Os_TE_446025 Chr3 15718782 15718781 - COPIA2-LTR_OS 6433 0.0020 (6/2981) 0 * Os_TE_446026 Os_TE_446009 Chr3 15714788 15714787 - TRUNCATOR2_LTR 2904 0.0070 (21/2987) 0 * * Os_TE_445989 Chr3 15710162 15710163 - COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * * Os_TE_445951 Chr3 15700852 15700853 - TELIA 141 0.7012 (1999/2851) 0 * Os_TE_445950 Os_TE_445950 Chr3 15700844 15700843 + TELIA 141 0.7035 (2012/2860) 0 * Os_TE_445951 Os_TE_445949 Chr3 15700199 15700200 + COPIA2-LTR_OS 6433 0.0203 (45/2219) 0 * Os_TE_445948 Os_TE_445948 Chr3 15700195 15700194 - COPIA2-LTR_OS 6433 0.0343 (76/2213) 0 * Os_TE_445949 Os_TE_445946 Chr3 15699188 15698842 - NDNA2TNA_OS 346 0.2325 (667/2869) 1 Intact Os_TE_445942 Os_TE_445942 Chr3 15698842 15699188 + NDNA2TNA_OS 346 0.2324 (667/2870) 1 Intact Os_TE_445946 Os_TE_445939 Chr3 15698378 15698377 - MPING 430 0.0003 (1/2885) 0 * * Os_TE_445934 Chr3 15695675 15695674 + ORSgTEMT00100291 345 0.0003 (1/2919) 0 * * Os_TE_445924 Chr3 15693485 15693486 + TWIFB1 3737 0.0007 (2/2740) 0 * * Os_TE_445905 Chr3 15689428 15689427 - STOWAWAY44_OS 240 0.0007 (2/2998) 0 * Os_TE_445904 Os_TE_445904 Chr3 15689425 15689426 + STOWAWAY44_OS 240 0.0010 (3/2997) 0 * Os_TE_445905 Os_TE_445898 Chr3 15685110 15685111 + COPIA2-LTR_OS 6433 0.0020 (6/2993) 0 * Os_TE_445897 Os_TE_445897 Chr3 15685106 15685105 - COPIA2-LTR_OS 6433 0.0017 (5/2993) 0 * Os_TE_445898 Os_TE_445880 Chr3 15679014 15679015 - COPIA2-LTR_OS 6433 0.0007 (2/2970) 0 * Os_TE_445879 Os_TE_445879 Chr3 15679010 15679009 + COPIA2-LTR_OS 6433 0.0007 (2/2974) 0 * Os_TE_445880 Os_TE_445855 Chr3 15670111 15670112 - ORSgTEMT00900099 250 0.7204 (2157/2994) 0 * * Os_TE_445853 Chr3 15666234 15666235 + ORSiTERTOOT00226 792 0.0074 (22/2984) 0 * Os_TE_445852 Os_TE_445852 Chr3 15666230 15666229 - SZ-22_LTR 4403 0.0074 (22/2985) 0 * Os_TE_445853 Os_TE_445845 Chr3 15658432 15658433 - ORSgTEMT01602100 238 0.6906 (1877/2718) 0 * * Os_TE_445840 Chr3 15653007 15652787 - ORSgTEMT02400179 221 0.2103 (606/2882) 1 Intact Os_TE_445839 Os_TE_445839 Chr3 15652788 15653006 - TYPEM 227 0.7097 (621/875) 1 Intact Os_TE_445840 Os_TE_445831 Chr3 15646496 15646497 - ORSgTEMT01601250 230 0.7079 (2050/2896) 0 * * Os_TE_445826 Chr3 15645141 15644973 + F804 170 0.2876 (858/2983) 1 Intact Os_TE_445825 Os_TE_445825 Chr3 15644973 15645141 - F804 170 0.2890 (864/2990) 1 Intact Os_TE_445826 Os_TE_445823 Chr3 15644381 15644380 + SZLTR 1249 0.0806 (241/2991) 0 * * Os_TE_445822 Chr3 15643819 15643820 - MPING 430 0.0136 (39/2866) 0 * Os_TE_445821 Os_TE_445821 Chr3 15643817 15643816 + MPING 430 0.0138 (40/2894) 0 * Os_TE_445822 Os_TE_445816 Chr3 15641055 15641056 - SC-3_LTR 5748 0.0007 (2/2978) 0 * Os_TE_445815 Os_TE_445815 Chr3 15641051 15641050 + ORSiTERTOOT00296 5553 0.0007 (2/2980) 0 * Os_TE_445816 Os_TE_445805 Chr3 15637684 15637477 - ORSgTEMT01400012 212 0.2819 (835/2962) 1 Intact * Os_TE_445798 Chr3 15636926 15636925 + RETROSAT2LTR 12796 0.0004 (1/2843) 0 * * Os_TE_445797 Chr3 15636287 15636288 + ORSgTETNOOT00072 203 0.0080 (7/875) 0 * Os_TE_445796 Os_TE_445796 Chr3 15636282 15636281 + ORSgTETNOOT01028 232 0.7156 (2104/2940) 0 * Os_TE_445797 Os_TE_445792 Chr3 15635302 15635301 + ORSgTEMT00900533 246 0.0004 (1/2225) 0 * * Os_TE_445789 Chr3 15633897 15633898 - BAJIELTR 4500 0.7313 (2155/2947) 0 * Os_TE_445788 Os_TE_445788 Chr3 15633893 15633892 + BAJIELTR 4500 0.7071 (1955/2765) 0 * Os_TE_445789 Os_TE_445773 Chr3 15632665 15633573 + OLO24B 335 0.2911 (864/2968) 1 Intact * Os_TE_445771 Chr3 15630846 15630845 + ORSgTETNOOT01930 140 0.0020 (6/2942) 0 * * Os_TE_445768 Chr3 15627327 15627326 + ORSgTEMT01601122 212 0.7208 (2101/2915) 0 * Os_TE_445767 Os_TE_445767 Chr3 15627324 15627325 + ORSgTEMT01601122 212 0.7089 (2002/2824) 0 * Os_TE_445768 Os_TE_445705 Chr3 15599826 15599827 - INDITTO 263 0.1133 (332/2930) 0 * Os_TE_445704 Os_TE_445704 Chr3 15599824 15599823 + INDITTO 263 0.1176 (343/2916) 0 * Os_TE_445705 Os_TE_445659 Chr3 15588093 15588094 + ORSgTEMT01601591 242 0.0003 (1/2981) 0 * * Os_TE_445652 Chr3 15583261 15583262 + RIRE2_LTR 11306 0.0003 (1/2948) 0 * Os_TE_445651 Os_TE_445651 Chr3 15583257 15583256 - RIRE2_LTR 11306 0.0003 (1/2958) 0 * Os_TE_445652 Os_TE_445630 Chr3 15577231 15577232 - RETROSAT3_LTR 11537 0.0007 (2/2988) 0 * Os_TE_445629 Os_TE_445629 Chr3 15577227 15577226 + RETROSAT2LTRA 3112 0.0007 (2/2988) 0 * Os_TE_445630 Os_TE_445592 Chr3 15568956 15568957 + COPI2_LTR 4733 0.0024 (7/2891) 0 * Os_TE_445591 Os_TE_445591 Chr3 15568952 15568951 - COPI2_LTR 4733 0.0024 (7/2886) 0 * Os_TE_445592 Os_TE_445585 Chr3 15568368 15568369 + GYPSY-A_LTR 8951 0.1000 (294/2941) 0 * Os_TE_445584 Os_TE_445584 Chr3 15568364 15568363 - SZ-40LTR 2465 0.1098 (327/2978) 0 * Os_TE_445585 Os_TE_445582 Chr3 15567921 15567922 - SC-1_LTR 6888 0.5734 (1714/2989) 0 * Os_TE_445581 Os_TE_445581 Chr3 15567917 15567916 + SC-1_LTR 6888 0.5682 (1695/2983) 0 * Os_TE_445582 Os_TE_445570 Chr3 15565251 15565252 + COPIA2-LTR_OS 6433 0.0003 (1/2966) 0 * Os_TE_445569 Os_TE_445569 Chr3 15565247 15565246 - COPIA2-LTR_OS 6433 0.0003 (1/2983) 0 * Os_TE_445570 Os_TE_445555 Chr3 15558846 15558847 + ORSgTEMT01700487 156 0.0004 (1/2743) 0 * * Os_TE_445547 Chr3 15555879 15555878 - ORSgTEMT00600085 364 0.5581 (1624/2910) 0 * * Os_TE_445511 Chr3 15529804 15529805 + SZ-17_LTR 3387 0.0287 (86/2996) 0 * Os_TE_445510 Os_TE_445510 Chr3 15529800 15529799 - SZ-17_LTR 3387 0.0294 (88/2996) 0 * Os_TE_445511 Os_TE_445488 Chr3 15518265 15518266 + ECR 394 0.0004 (1/2618) 0 * * Os_TE_445443 Chr3 15502264 15502265 + SC-8_LTR 4951 0.0003 (1/2966) 0 * * Os_TE_445408 Chr3 15495854 15495855 + F770 284 0.1628 (480/2949) 0 * Os_TE_445407 Os_TE_445407 Chr3 15495852 15495851 - F770 284 0.1606 (470/2927) 0 * Os_TE_445408 Os_TE_445374 Chr3 15486513 15486512 + COPI2_LTR 4733 0.0007 (2/2996) 0 * * Os_TE_445362 Chr3 15484234 15484233 - ORSgTEMT03400006 238 0.0003 (1/2982) 0 * * Os_TE_445337 Chr3 15474081 15474082 + OSMAR1 5265 0.1687 (504/2988) 0 * * Os_TE_445323 Chr3 15466210 15466211 - RETROSAT2LTR 12796 0.0020 (6/2979) 0 * * Os_TE_445316 Chr3 15460734 15460401 - NDNA1TNA_OS 334 0.1372 (399/2909) 1 Intact Os_TE_445315 Os_TE_445315 Chr3 15460401 15460734 + NDNA1TNA_OS 334 0.1454 (424/2916) 1 Intact Os_TE_445316 Os_TE_445306 Chr3 15458599 15458600 + MuDR2_OS 6770 0.4296 (1200/2793) 0 * Os_TE_445305 Os_TE_445305 Chr3 15458590 15458589 - MuDR2_OS 6770 0.4239 (1178/2779) 0 * Os_TE_445306 Os_TE_445255 Chr3 15435230 15435231 + NDNA1TNA_OS 334 0.0047 (14/2958) 0 * Os_TE_445254 Os_TE_445254 Chr3 15435229 15435228 - NDNA1TNA_OS 334 0.0054 (16/2967) 0 * Os_TE_445255 Os_TE_445253 Chr3 15435208 15435209 - ORSgTETNOOT02339 261 0.0203 (60/2961) 0 * Os_TE_445252 Os_TE_445252 Chr3 15435206 15435205 + INDITTO 263 0.0231 (68/2949) 0 * Os_TE_445253 Os_TE_445246 Chr3 15434504 15434505 + COPI2_LTR 4733 0.0003 (1/2993) 0 * Os_TE_445245 Os_TE_445245 Chr3 15434500 15434499 - COPI2_LTR 4733 0.0003 (1/2990) 0 * Os_TE_445246 Os_TE_445242 Chr3 15432925 15432926 + COPIA2-LTR_OS 6433 0.0003 (1/2911) 0 * Os_TE_445241 Os_TE_445241 Chr3 15432921 15432920 - COPIA2-LTR_OS 6433 0.0003 (1/2920) 0 * Os_TE_445242 Os_TE_445232 Chr3 15431207 15431448 + ORSgTETNOOT02019 240 0.6733 (1985/2948) 1 Intact * Os_TE_445230 Chr3 15430317 15430316 - ORSgTEMT02400246 177 0.1932 (546/2826) 0 * Os_TE_445229 Os_TE_445229 Chr3 15430316 15430317 - TYPEM 227 0.1861 (511/2746) 0 * Os_TE_445230 Os_TE_445227 Chr3 15430110 15430111 - ORSgTEMT02400179 221 0.1616 (402/2488) -1 * Os_TE_445226 Os_TE_445226 Chr3 15430109 15430108 - TYPEM 227 0.1868 (459/2457) -1 * Os_TE_445227 Os_TE_445206 Chr3 15426746 15426747 - RIREX_LTR 8828 0.0003 (1/2956) 0 * Os_TE_445205 Os_TE_445205 Chr3 15426742 15426741 + RIREX_LTR 8828 0.0003 (1/2952) 0 * Os_TE_445206 Os_TE_445192 Chr3 15419661 15419660 + ORSgTEMT02400014 229 0.1884 (564/2994) 0 * Os_TE_445191 Os_TE_445191 Chr3 15419659 15419660 - ORSgTEMT02400179 221 0.1888 (564/2987) 0 * Os_TE_445192 Os_TE_445182 Chr3 15410114 15410115 + TWIFB1 3737 0.0004 (1/2432) 0 * * Os_TE_445181 Chr3 15410099 15410100 - ORSgTEMT02400179 221 0.1907 (561/2942) 0 * Os_TE_445180 Os_TE_445180 Chr3 15410098 15410097 - TYPEM 227 0.1872 (549/2933) 0 * Os_TE_445181 Os_TE_445169 Chr3 15403140 15403141 + ORSiTERTOOT00381 4988 0.0003 (1/2992) 0 * Os_TE_445168 Os_TE_445168 Chr3 15403136 15403135 - SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_445169 Os_TE_445138 Chr3 15388212 15388213 - COPI2_LTR 4733 0.0010 (3/2901) 0 * * Os_TE_445117 Chr3 15380639 15380640 + FOCUS 257 0.0010 (3/2970) 0 * Os_TE_445116 Os_TE_445116 Chr3 15380637 15380636 - FOCUS 257 0.0010 (3/2980) 0 * Os_TE_445117 Os_TE_445108 Chr3 15377021 15377020 - ORSgTEMT00600478 361 0.0020 (6/2938) 0 * * Os_TE_445105 Chr3 15375561 15375795 + TNR11 811 0.2643 (365/1381) 1 Intact * Os_TE_445104 Chr3 15375535 15375300 + ORSgTEMT01601639 236 0.2723 (369/1355) 1 Intact Os_TE_445103 Os_TE_445103 Chr3 15375300 15375538 + ORSgTEMT01602181 239 0.1264 (368/2912) 1 Intact Os_TE_445104 Os_TE_445095 Chr3 15373043 15373042 + ORSgTEMT01601591 242 0.3011 (527/1750) 0 * * Os_TE_445094 Chr3 15373004 15373005 + RIRE5-LTR_OS 6427 0.5367 (1456/2713) 0 * * Os_TE_445088 Chr3 15371570 15371827 - ORSgTEMT00101174 225 0.1251 (365/2918) 1 Intact * Os_TE_445087 Chr3 15371560 15371561 - TRUNCATOR2_LTR 2904 0.0051 (15/2929) 0 * * Os_TE_445086 Chr3 15371523 15371524 + NDNA1TNA_OS 334 0.0887 (260/2932) 0 * Os_TE_445085 Os_TE_445085 Chr3 15371521 15371520 - NDNA1TNA_OS 334 0.0866 (244/2817) 0 * Os_TE_445086 Os_TE_445071 Chr3 15369791 15369792 + COPI2_LTR 4733 0.0003 (1/2983) 0 * Os_TE_445070 Os_TE_445070 Chr3 15369787 15369786 - COPI2_LTR 4733 0.0003 (1/2988) 0 * Os_TE_445071 Os_TE_445063 Chr3 15367593 15367594 - SZ-9LTR 965 0.0857 (254/2964) 0 * Os_TE_445062 Os_TE_445062 Chr3 15367589 15367588 + SZ-9LTR 965 0.0838 (248/2961) 0 * Os_TE_445063 Os_TE_445051 Chr3 15365416 15365417 - TRUNCATOR2_LTR 2904 0.7082 (2095/2958) 0 * Os_TE_445050 Os_TE_445050 Chr3 15365412 15365411 + TRUNCATOR2_LTR 2904 0.7064 (2067/2926) 0 * Os_TE_445051 Os_TE_445030 Chr3 15360332 15360333 - RIREX_LTR 8828 0.0875 (262/2995) 0 * Os_TE_445029 Os_TE_445029 Chr3 15360328 15360327 + RIREX_LTR 8828 0.0862 (258/2994) 0 * Os_TE_445030 Os_TE_444998 Chr3 15346174 15346173 - ORSgTEMT01800052 396 0.0017 (5/2914) 0 * Os_TE_444997 Os_TE_444997 Chr3 15346172 15346173 - ORSgTEMT01800052 396 0.0024 (7/2917) 0 * Os_TE_444998 Os_TE_444982 Chr3 15339222 15339223 - INDITTO 263 0.0051 (15/2951) 0 * * Os_TE_444981 Chr3 15339020 15339021 + ORSgTEMT00500885 144 0.0057 (17/2990) 0 * Os_TE_444980 Os_TE_444980 Chr3 15339009 15339008 + ORSgTEMT00501786 149 0.0057 (17/2990) 0 * Os_TE_444981 Os_TE_444975 Chr3 15336650 15336651 - MuDR3_OS 8604 0.0595 (177/2976) 0 * Os_TE_444974 Os_TE_444974 Chr3 15336641 15336640 - MuDR3_OS 8604 0.0530 (157/2960) 0 * Os_TE_444975 Os_TE_444973 Chr3 15336444 15336443 + HELITRON7_OS 10153 0.0216 (63/2918) 0 * * Os_TE_444965 Chr3 15331050 15331051 - SC-8_LTR 4951 0.0008 (2/2639) 0 * Os_TE_444964 Os_TE_444964 Chr3 15331046 15331045 + SC-8_LTR 4951 0.0004 (1/2792) 0 * Os_TE_444965 Os_TE_444954 Chr3 15328112 15328113 + ORSgTEMT01602119 229 0.7736 (1893/2447) 0 * Os_TE_444953 Os_TE_444953 Chr3 15328109 15328108 - ORSgTEMT01600747 238 0.0648 (41/633) 0 * Os_TE_444954 Os_TE_444950 Chr3 15327044 15327043 - STOLAB 312 0.2042 (599/2934) 0 * * Os_TE_444948 Chr3 15326940 15326941 + COPIA2-LTR_OS 6433 0.6236 (1846/2960) 0 * Os_TE_444947 Os_TE_444947 Chr3 15326936 15326935 - COPIA2-LTR_OS 6433 0.6303 (1860/2951) 0 * Os_TE_444948 Os_TE_444935 Chr3 15324493 15324175 - OLO24 345 0.4775 (509/1066) 1 Intact * Os_TE_444933 Chr3 15324075 15324074 - STOWAWAY51_OS 246 0.0018 (2/1127) 0 * * Os_TE_444921 Chr3 15320284 15320285 + ORSgTEMT01600300 235 0.7769 (2211/2846) 0 * * Os_TE_444899 Chr3 15309187 15309186 + ORSgTEMT01400012 212 0.5875 (1639/2790) 0 * Os_TE_444898 Os_TE_444898 Chr3 15309183 15309184 - ORSgTEMT01400022 212 0.6203 (1843/2971) 0 * Os_TE_444899 Os_TE_444896 Chr3 15308981 15308982 + ORSgTEMT01601591 242 0.0277 (83/2992) 0 * * Os_TE_444894 Chr3 15308159 15308160 + ORSgTEMT00101674 340 0.6238 (1849/2964) 0 * * Os_TE_444879 Chr3 15302719 15302866 + SZ-41LTR 163 0.3922 (1173/2991) 1 Intact * Os_TE_444876 Chr3 15302035 15302034 - ORSgTEMT01602425 234 0.6270 (1876/2992) 0 * * Os_TE_444875 Chr3 15301864 15301608 - ORSgTETNOOT01607 258 0.3909 (1163/2975) 1 Intact * Os_TE_444847 Chr3 15292093 15292092 + COPIA2-LTR_OS 6433 0.0007 (2/2998) 0 * * Os_TE_444770 Chr3 15251489 15249982 + SZ-19LTR 1513 0.4794 (1278/2666) 1 Intact * Os_TE_444694 Chr3 15224086 15224085 + ORSgTETNOOT00012 241 0.0003 (1/2935) 0 * * Os_TE_444693 Chr3 15223812 15223813 + ORSgTEMT00501366 147 0.6034 (1800/2983) 0 * * Os_TE_444688 Chr3 15221210 15221057 - ORSgTEMT01700794 153 0.4146 (1242/2996) 1 Intact Os_TE_444685 Os_TE_444685 Chr3 15221057 15221210 + ORSgTEMT01702071 154 0.4131 (1236/2992) 1 Intact Os_TE_444688 Os_TE_444679 Chr3 15213342 15213341 + ORSgTEMT03400012 238 0.6030 (1800/2985) 0 * Os_TE_444678 Os_TE_444678 Chr3 15213324 15213325 + TAMI2 254 0.6007 (1783/2968) 0 * Os_TE_444679 Os_TE_444664 Chr3 15211453 15211454 - RETRO2A_LTR 12895 0.0791 (228/2883) 0 * * Os_TE_444657 Chr3 15210970 15210971 - ORSgTETNOOT00118 134 0.6032 (1798/2981) 0 * * Os_TE_444638 Chr3 15197713 15197567 + ORSgTEMT00500476 150 0.4039 (1200/2971) 1 Intact * Os_TE_444625 Chr3 15194249 15194248 + ORSgTEMT01601934 207 0.6066 (1787/2946) 0 * * Os_TE_444623 Chr3 15194095 15194096 - ORSgTEMT01601696 238 0.5898 (1632/2767) 0 * * Os_TE_444573 Chr3 15163928 15163929 - COPIA2-LTR_OS 6433 0.0007 (2/2958) 0 * * Os_TE_444571 Chr3 15163669 15163670 - SZ-9LTR 965 0.0232 (69/2976) 0 * Os_TE_444570 Os_TE_444570 Chr3 15163665 15163664 + SZ-9LTR 965 0.0229 (68/2970) 0 * Os_TE_444571 Os_TE_444556 Chr3 15156773 15155987 + ORSiTERTOOT00085 785 0.6775 (1353/1997) 1 Intact * Os_TE_444537 Chr3 15154648 15154649 - EnSpm-13_OS 11171 0.0007 (2/2941) 0 * * Os_TE_444524 Chr3 15152282 15152281 - ORSgTEMT01601432 239 0.0048 (14/2945) 0 * * Os_TE_444521 Chr3 15151547 15151546 - ORSiTERTOOT00074 4935 0.0004 (1/2667) 0 * * Os_TE_444507 Chr3 15146071 15146072 - ORSgTEMT00900965 216 0.8303 (2476/2982) 0 * * Os_TE_444505 Chr3 15144985 15144986 - EnSpm-16_OS 13336 0.0003 (1/2924) 0 * Os_TE_444504 Os_TE_444504 Chr3 15144983 15144982 + EnSpm-16_OS 13336 0.0003 (1/2912) 0 * Os_TE_444505 Os_TE_444494 Chr3 15143120 15144232 - CACTA-M 1129 0.2297 (592/2577) 1 Intact * Os_TE_444491 Chr3 15140775 15141894 + CACTA-B 1103 0.2036 (608/2986) 1 Intact * Os_TE_444487 Chr3 15139370 15139371 + ORSgTEMT01400031 216 0.7429 (1748/2353) 0 * * Os_TE_444486 Chr3 15139212 15139095 + ORSgTEMT01702111 154 0.2284 (613/2684) 1 Intact Os_TE_444485 Os_TE_444485 Chr3 15139095 15139212 + ORSgTEMT01701591 154 0.2209 (613/2775) 1 Intact Os_TE_444486 Os_TE_444483 Chr3 15138902 15138903 - ORSgTEMT01601366 243 0.7610 (1882/2473) 0 * * Os_TE_444442 Chr3 15119285 15119284 - MDM2 312 0.0047 (14/2986) 0 * * Os_TE_444420 Chr3 15111653 15111652 - OSTE21 1271 0.0003 (1/2979) 0 * * Os_TE_444358 Chr3 15095294 15095295 - CACTA-H 1152 0.0013 (1/784) 0 * * Os_TE_444349 Chr3 15092680 15081379 - RIRE2_LTR 11306 0.0244 (73/2992) 1 Intact Os_TE_444347 Os_TE_444347 Chr3 15081379 15092680 - ORSgTERT00201216 11284 0.0244 (73/2988) 1 Intact Os_TE_444349 Os_TE_444345 Chr3 15080195 15080194 + SPMLIKE 10989 0.0020 (6/2983) 0 * Os_TE_444344 Os_TE_444344 Chr3 15080176 15080177 + TRUNCATOR 2918 0.0023 (7/2987) 0 * Os_TE_444345 Os_TE_444341 Chr3 15079895 15079896 - MuDR3_OS 8604 0.1638 (487/2973) 0 * * Os_TE_444323 Chr3 15066231 15066232 - RIRE3_LTR 12054 0.0013 (4/2963) 0 * * Os_TE_444322 Chr3 15065835 15065836 + TWIF 586 0.0003 (1/2968) 0 * Os_TE_444321 Os_TE_444321 Chr3 15065828 15065827 - ORSiTETNOOT00134 607 0.0003 (1/2975) 0 * Os_TE_444322 Os_TE_444305 Chr3 15050089 15063457 - RETROSAT2LTR 12796 0.0295 (88/2981) 1 Intact * Os_TE_444267 Chr3 15039172 15034254 - SC-10_LTR 4920 0.0243 (72/2960) 1 Intact Os_TE_444266 Os_TE_444266 Chr3 15034254 15039172 + SC-10_LTR 4920 0.0243 (72/2961) 1 Intact Os_TE_444267 Os_TE_444257 Chr3 15031329 15031328 + ORSgTEMT01600421 237 0.0050 (15/2975) 0 * * Os_TE_444256 Chr3 15030362 15030361 + TRUNCATOR 2918 0.5677 (1702/2998) 0 * * Os_TE_444253 Chr3 15029985 15029986 - RETROSAT2LTR 12796 0.0004 (1/2364) 0 * * Os_TE_444252 Chr3 15029833 15029834 + ORSiTERTOOT00226 792 0.0003 (1/2950) 0 * Os_TE_444251 Os_TE_444251 Chr3 15029829 15029828 - SZ-22_LTR 4403 0.0003 (1/2957) 0 * Os_TE_444252 Os_TE_444170 Chr3 14987517 14987516 - LINE-6_OS 4886 0.0007 (2/2943) 0 * * Os_TE_444159 Chr3 14983038 14983037 - ORSgTEMT00502337 144 0.5771 (1715/2972) 0 * * Os_TE_444156 Chr3 14982490 14982491 - TYPEM 227 0.4533 (994/2193) 0 * * Os_TE_444148 Chr3 14978121 14978120 - STOWAWAY1_OS 149 0.5702 (1662/2915) 0 * Os_TE_444147 Os_TE_444147 Chr3 14978120 14978121 + ORSgTEMT01700513 151 0.5835 (1729/2963) 0 * Os_TE_444148 Os_TE_444145 Chr3 14976751 14976752 + SZ-61LTR 2410 0.0026 (7/2709) 0 * Os_TE_444144 Os_TE_444144 Chr3 14976747 14976746 - CPR1_LTR 9493 0.0021 (6/2897) 0 * Os_TE_444145 Os_TE_444143 Chr3 14976610 14972621 - RETROSAT4_LTR 13504 0.2436 (706/2898) 1 Solo_LTR * Os_TE_444127 Chr3 14968830 14968831 - STOWAWAY9_OS 235 0.5236 (1332/2544) 0 * * Os_TE_444118 Chr3 14965743 14965744 - RIREX_LTR 8828 0.0010 (3/2994) 0 * Os_TE_444117 Os_TE_444117 Chr3 14965739 14965738 + RIREX_LTR 8828 0.0010 (3/2990) 0 * Os_TE_444118 Os_TE_444096 Chr3 14957575 14957576 - ORSgTEMT02400179 221 0.0003 (1/2979) 0 * Os_TE_444095 Os_TE_444095 Chr3 14957574 14957573 - TYPEM 227 0.0003 (1/2967) 0 * Os_TE_444096 Os_TE_444063 Chr3 14945437 14945438 + ORSiCMCM00100013 9728 0.0003 (1/2990) 0 * * Os_TE_444059 Chr3 14944500 14944501 + COPIA2-LTR_OS 6433 0.0010 (3/2918) 0 * Os_TE_444058 Os_TE_444058 Chr3 14944496 14944495 - COPIA2-LTR_OS 6433 0.0010 (3/2922) 0 * Os_TE_444059 Os_TE_444041 Chr3 14936039 14936038 + TYPEH 309 0.0003 (1/2987) 0 * * Os_TE_444020 Chr3 14918466 14918467 - SC-3_LTR 5748 0.0003 (1/2986) 0 * Os_TE_444019 Os_TE_444019 Chr3 14918462 14918461 + ORSiTERTOOT00296 5553 0.0003 (1/2988) 0 * Os_TE_444020 Os_TE_443998 Chr3 14895739 14895740 - ORSgTEMT00100592 158 0.0003 (1/2918) 0 * * Os_TE_443929 Chr3 14870017 14870018 - SZ-22_LTR 4403 0.0071 (21/2946) 0 * Os_TE_443928 Os_TE_443928 Chr3 14870013 14870012 + ORSiTERTOOT00226 792 0.0076 (22/2905) 0 * Os_TE_443929 Os_TE_443922 Chr3 14867699 14867698 + ORSgTETNOOT00032 218 0.0010 (3/2992) 0 * * Os_TE_443858 Chr3 14845174 14845175 + ORSiTERTOOT00296 5553 0.0027 (8/2996) 0 * Os_TE_443857 Os_TE_443857 Chr3 14845170 14845169 - SC-3_LTR 5748 0.0030 (9/2994) 0 * Os_TE_443858 Os_TE_443816 Chr3 14830735 14830736 - CRM-LTR_OS 7749 0.0013 (4/2986) 0 * Os_TE_443815 Os_TE_443815 Chr3 14830731 14830730 + SZ-22_LTR 4403 0.0013 (4/2988) 0 * Os_TE_443816 Os_TE_443793 Chr3 14827300 14827301 - ATLANTYS-LTR_OS 13740 0.0003 (1/2918) 0 * * Os_TE_443681 Chr3 14787694 14787693 - STOWAWAY51_OS 246 0.0003 (1/2986) 0 * Os_TE_443680 Os_TE_443680 Chr3 14787688 14787689 + STOWAWAY51_OS 246 0.0003 (1/2992) 0 * Os_TE_443681 Os_TE_443666 Chr3 14783147 14783148 - RETROFIT_LTR 4866 0.0004 (1/2779) 0 * * Os_TE_443662 Chr3 14782281 14782282 - TELIA 141 0.0010 (3/2948) 0 * Os_TE_443661 Os_TE_443661 Chr3 14782273 14782272 + TELIA 141 0.0010 (3/2945) 0 * Os_TE_443662 Os_TE_443646 Chr3 14776947 14776946 - TYPEH 309 0.0010 (3/2919) 0 * * Os_TE_443639 Chr3 14774352 14774351 - MERMITE18B 1306 0.0024 (7/2959) 0 * * Os_TE_443634 Chr3 14773283 14773284 - RETROSAT4_LTR 13504 0.0010 (3/2971) 0 * Os_TE_443633 Os_TE_443633 Chr3 14773279 14773278 + RETROSAT4_LTR 13504 0.0007 (2/2972) 0 * Os_TE_443634 Os_TE_443632 Chr3 14772042 14772041 - TYPEH 309 0.0010 (3/2956) 0 * * Os_TE_443629 Chr3 14769205 14769206 - TRUNCATOR2_LTR 2904 0.0585 (173/2957) 0 * * Os_TE_443622 Chr3 14764611 14764612 + OLO24 345 0.0003 (1/2987) 0 * Os_TE_443621 Os_TE_443621 Chr3 14764609 14764608 - OLO24 345 0.0003 (1/2991) 0 * Os_TE_443622 Os_TE_443596 Chr3 14757210 14757211 - ORSgTEMT02400179 221 0.0010 (3/2893) 0 * Os_TE_443595 Os_TE_443595 Chr3 14757209 14757208 - TYPEM 227 0.0010 (3/2903) 0 * Os_TE_443596 Os_TE_443579 Chr3 14753588 14753589 + OLO24 345 0.0010 (3/2994) 0 * * Os_TE_443576 Chr3 14750708 14750707 + ORSgTEMT00900230 250 0.0010 (3/2989) 0 * Os_TE_443575 Os_TE_443575 Chr3 14750704 14750705 + ORSgTEMT00900319 250 0.0010 (3/2993) 0 * Os_TE_443576 Os_TE_443525 Chr3 14730075 14730076 + STOWAWAY9_OS 235 0.0023 (7/2991) 0 * Os_TE_443524 Os_TE_443524 Chr3 14730074 14730073 + STOWAWAY9_OS 235 0.0023 (7/2993) 0 * Os_TE_443525 Os_TE_443522 Chr3 14727966 14727967 + RIREX_LTR 8828 0.0074 (22/2985) 0 * Os_TE_443521 Os_TE_443521 Chr3 14727962 14727961 - RIREX_LTR 8828 0.0071 (21/2977) 0 * Os_TE_443522 Os_TE_443467 Chr3 14698910 14698911 + STOWAWAY51_OS 246 0.0009 (2/2243) 0 * * Os_TE_443454 Chr3 14686352 14686351 - ORSiCMCM00100014 10855 0.0019 (2/1081) -1 * * Os_TE_443426 Chr3 14681264 14680981 - F770 284 0.4194 (1170/2790) 1 Intact * Os_TE_443411 Chr3 14676832 14676833 - COPIO_LTR 11693 0.2842 (785/2762) 0 * Os_TE_443410 Os_TE_443410 Chr3 14676828 14676827 + COPIO_LTR 11693 0.2933 (835/2847) 0 * Os_TE_443411 Os_TE_443396 Chr3 14672366 14671933 - ORSgTEMT01800105 452 0.7381 (2204/2986) 1 Intact * Os_TE_443388 Chr3 14670539 14670155 + ORSgTEMT00300069 394 0.7649 (2206/2884) 1 Intact Os_TE_443385 Os_TE_443385 Chr3 14670148 14670533 + ORSgTEMT00300064 397 0.8625 (2221/2575) 1 Intact Os_TE_443388 Os_TE_443384 Chr3 14670047 14670046 - ORSgTEMT01702320 154 0.2197 (613/2790) 0 * * Os_TE_443373 Chr3 14666996 14666712 - YOUREN 286 0.7053 (1864/2643) 1 Intact Os_TE_443370 Os_TE_443370 Chr3 14666712 14666996 + YOUREN 286 0.7485 (2217/2962) 1 Intact Os_TE_443373 Os_TE_443367 Chr3 14666626 14666625 - ORSgTEMT00500578 129 0.2616 (770/2943) 0 * Os_TE_443366 Os_TE_443366 Chr3 14666624 14666625 + ORSgTEMT00501786 149 0.2312 (659/2850) 0 * Os_TE_443367 Os_TE_443365 Chr3 14666228 14665863 - ORSgTEMT00600524 364 0.7673 (2160/2815) 1 Intact Os_TE_443363 Os_TE_443363 Chr3 14665863 14666225 + ORSgTEMT00600448 360 0.7755 (2228/2873) 1 Intact Os_TE_443365 Os_TE_443361 Chr3 14665819 14665818 + NDNA1TNA_OS 334 0.0011 (3/2839) 0 * * Os_TE_443360 Chr3 14665767 14665641 - ORSgTEMT00500649 148 0.7537 (2216/2940) 1 Intact * Os_TE_443355 Chr3 14665459 14665460 + STOWAWAY13_OS 251 0.0017 (5/2964) 0 * * Os_TE_443353 Chr3 14665256 14665018 + ORSgTEMT01600662 238 0.7469 (2213/2963) 1 Intact * Os_TE_443348 Chr3 14663809 14663808 - STOWAWAY1_OS 149 0.0024 (7/2969) 0 * * Os_TE_443343 Chr3 14656202 14656203 + ORSgTETNOOT01834 251 0.0007 (2/2976) 0 * * Os_TE_443337 Chr3 14654209 14654208 - MPING 430 0.0007 (2/2875) 0 * * Os_TE_443326 Chr3 14649598 14649599 - NONAME 312 0.0023 (7/2992) 0 * Os_TE_443325 Os_TE_443325 Chr3 14649596 14649595 + NONAME 312 0.0023 (7/2994) 0 * Os_TE_443326 Os_TE_443323 Chr3 14649574 14649573 + RIREX_LTR 8828 0.0003 (1/2988) 0 * * Os_TE_443272 Chr3 14625288 14625289 - ORSgTEMT00901723 248 0.0010 (3/2983) 0 * * Os_TE_443270 Chr3 14625202 14625203 - TYPEM 227 0.0003 (1/2983) 0 * Os_TE_443269 Os_TE_443269 Chr3 14625201 14625200 - ORSgTEMT02400179 221 0.0003 (1/2980) 0 * Os_TE_443270 Os_TE_443268 Chr3 14625187 14625188 + COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * Os_TE_443267 Os_TE_443267 Chr3 14625183 14625182 - COPIA2-LTR_OS 6433 0.0003 (1/2984) 0 * Os_TE_443268 Os_TE_443259 Chr3 14622998 14622999 - TRUNCATOR2_LTR 2904 0.0010 (3/2959) 0 * Os_TE_443258 Os_TE_443258 Chr3 14622994 14622993 + ORSiTERTOOT00028 8600 0.0010 (3/2964) 0 * Os_TE_443259 Os_TE_443229 Chr3 14618092 14618093 + ORSgTETNOOT02577 232 0.0010 (3/2988) 0 * Os_TE_443228 Os_TE_443228 Chr3 14618091 14618090 - ORSgTETNOOT01607 258 0.0010 (3/2987) 0 * Os_TE_443229 Os_TE_443210 Chr3 14611828 14611829 + RIREX_LTR 8828 0.0003 (1/2989) 0 * Os_TE_443209 Os_TE_443209 Chr3 14611824 14611823 - RIREX_LTR 8828 0.0003 (1/2987) 0 * Os_TE_443210 Os_TE_443197 Chr3 14608108 14608109 + ORSgTEMT00600192 355 0.2504 (742/2963) 0 * Os_TE_443196 Os_TE_443196 Chr3 14608106 14608105 - ORSgTEMT00600085 364 0.2534 (752/2968) 0 * Os_TE_443197 Os_TE_443167 Chr3 14600881 14600882 + ORSgTEMT00600376 329 0.0010 (3/2944) 0 * Os_TE_443166 Os_TE_443166 Chr3 14600876 14600875 + ORSgTEMT00600272 361 0.0010 (3/2947) 0 * Os_TE_443167 Os_TE_443156 Chr3 14597629 14597630 - RIREX_LTR 8828 0.0007 (2/2956) 0 * Os_TE_443155 Os_TE_443155 Chr3 14597625 14597624 + RIREX_LTR 8828 0.0007 (2/2953) 0 * Os_TE_443156 Os_TE_443140 Chr3 14593653 14593652 - TRUNCATOR 2918 0.0587 (172/2931) 0 * * Os_TE_443139 Chr3 14592806 14592807 + TRUNCATOR 2918 0.0634 (187/2948) -1 * * Os_TE_443123 Chr3 14588204 14588203 + ORSgTEMT01601591 242 0.0007 (2/2985) 0 * Os_TE_443122 Os_TE_443122 Chr3 14588198 14588199 + STOWAWAY51_OS 246 0.0007 (2/2992) 0 * Os_TE_443123 Os_TE_443081 Chr3 14571142 14571143 + ORSgTEMT00600272 361 0.0541 (162/2994) 0 * Os_TE_443080 Os_TE_443080 Chr3 14571137 14571136 + ORSgTEMT00600376 329 0.0541 (162/2994) 0 * Os_TE_443081 Os_TE_443079 Chr3 14570629 14570630 - RIRE2_LTR 11306 0.1881 (554/2945) 0 * Os_TE_443078 Os_TE_443078 Chr3 14570625 14570624 + RIRE2_LTR 11306 0.1986 (588/2961) 0 * Os_TE_443079 Os_TE_443058 Chr3 14564085 14564086 + RETROSAT2LTR 12796 0.0637 (191/2997) 0 * Os_TE_443057 Os_TE_443057 Chr3 14564083 14564082 - RETROSAT2LTR 12796 0.0660 (198/2998) 0 * Os_TE_443058 Os_TE_443052 Chr3 14562934 14562933 + ORSgTEMT00300063 413 0.0013 (3/2232) 0 * * Os_TE_443049 Chr3 14558002 14558003 - STOWAWAY1_OS 149 0.0010 (3/2997) 0 * Os_TE_443048 Os_TE_443048 Chr3 14558001 14558000 - ORSgTEMT01701653 147 0.0010 (3/2998) 0 * Os_TE_443049 Os_TE_443039 Chr3 14556478 14556479 + ORSgTEMT00101116 321 0.0010 (3/2993) 0 * Os_TE_443038 Os_TE_443038 Chr3 14556477 14556476 + ORSgTEMT00500260 149 0.0010 (3/2991) 0 * Os_TE_443039 Os_TE_443037 Chr3 14554523 14554524 - ORSgTEMT00501568 147 0.0003 (1/2986) 0 * * Os_TE_443031 Chr3 14551812 14552050 - ORSgTEMT01602082 215 0.8943 (2546/2847) 1 Intact * Os_TE_443004 Chr3 14543189 14543188 - RIRE2_LTR 11306 0.1902 (569/2991) 0 * Os_TE_443003 Os_TE_443003 Chr3 14543168 14543169 + RIRE2_LTR 11306 0.0030 (6/2032) 0 * Os_TE_443004 Os_TE_443002 Chr3 14543054 14543055 + ORSgTEMT03000039 377 0.3432 (1018/2966) 0 * * Os_TE_442993 Chr3 14538034 14538033 + STOWAWAY51_OS 246 0.0013 (4/2994) 0 * Os_TE_442992 Os_TE_442992 Chr3 14538028 14538029 - STOWAWAY51_OS 246 0.0013 (4/2994) 0 * Os_TE_442993 Os_TE_442959 Chr3 14520326 14519963 + CASTAWAY 364 0.6653 (1962/2949) 1 Intact * Os_TE_442932 Chr3 14508434 14508435 + COPI2_LTR 4733 0.0003 (1/2992) 0 * * Os_TE_442923 Chr3 14503293 14503294 - COPIA2-LTR_OS 6433 0.0004 (1/2765) 0 * Os_TE_442922 Os_TE_442922 Chr3 14503289 14503288 + COPIA2-LTR_OS 6433 0.0003 (1/2954) 0 * Os_TE_442923 Os_TE_442909 Chr3 14496664 14496663 - ORSgTEMT01602082 215 0.0553 (160/2895) 0 * * Os_TE_442882 Chr3 14487237 14487238 - RETROSAT4_LTR 13504 0.1143 (337/2948) 0 * * Os_TE_442845 Chr3 14475714 14475713 - OSLINE1-2 7128 0.0007 (2/2971) 0 * * Os_TE_442844 Chr3 14475451 14475452 + RETROSAT4_LTR 13504 0.3850 (1138/2956) 0 * * Os_TE_442812 Chr3 14462256 14462257 + RIREX_LTR 8828 0.0003 (1/2992) 0 * Os_TE_442811 Os_TE_442811 Chr3 14462252 14462251 - RIREX_LTR 8828 0.0003 (1/2999) 0 * Os_TE_442812 Os_TE_442808 Chr3 14461220 14461219 + TRUNCATOR 2918 0.0003 (1/2890) 0 * * Os_TE_442761 Chr3 14442736 14442737 - RIREX_LTR 8828 0.0012 (2/1737) 0 * * Os_TE_442760 Chr3 14442461 14442321 + ORSgTEMT00501786 149 0.0758 (222/2928) 1 Intact Os_TE_442759 Os_TE_442759 Chr3 14442317 14442458 - ORSgTEMT00500578 129 0.0801 (229/2860) 1 Intact Os_TE_442760 Os_TE_442755 Chr3 14440546 14440547 + ORSgTEMT01701016 130 0.0007 (2/2685) 0 * * Os_TE_442747 Chr3 14431144 14431145 + RETRO1_LTR 8314 0.0007 (2/2849) 0 * * Os_TE_442744 Chr3 14429539 14429540 + TWIF 586 0.0007 (2/2988) 0 * Os_TE_442743 Os_TE_442743 Chr3 14429532 14429531 - ORSiTETNOOT00200 3563 0.0007 (2/2983) 0 * Os_TE_442744 Os_TE_442722 Chr3 14417520 14417281 - ORSgTEMT01602413 239 0.0763 (205/2687) 1 Intact Os_TE_442720 Os_TE_442720 Chr3 14417281 14417520 - ORSgTEMT01602413 239 0.1279 (189/1478) -1 Intact Os_TE_442722 Os_TE_442718 Chr3 14417060 14417061 + SZ-30_LTR 6377 0.0024 (7/2953) 0 * Os_TE_442717 Os_TE_442717 Chr3 14417056 14417055 - SZ-30_LTR 6377 0.0024 (7/2946) 0 * Os_TE_442718 Os_TE_442692 Chr3 14399419 14399418 + ORSgTEMT01600891 233 0.0128 (3/234) 0 * * Os_TE_442682 Chr3 14396939 14396940 - MERMITE18B 1306 0.0007 (2/2982) 0 * * Os_TE_442653 Chr3 14386081 14386080 + ORSgTEMT01601934 207 0.0014 (4/2806) 0 * Os_TE_442652 Os_TE_442652 Chr3 14386078 14386079 + ORSgTEMT01602181 239 0.0024 (7/2915) 0 * Os_TE_442653 Os_TE_442646 Chr3 14383357 14383356 + CACTA-B 1103 0.0004 (1/2833) 0 * * Os_TE_442642 Chr3 14381985 14381984 - SZ-66LTR 1223 0.0003 (1/2909) 0 * * Os_TE_442632 Chr3 14377754 14377755 - ORSgTEMT02400179 221 0.0057 (14/2447) -1 * * Os_TE_442622 Chr3 14375850 14375851 + COPIA2-LTR_OS 6433 0.0003 (1/2953) 0 * Os_TE_442621 Os_TE_442621 Chr3 14375846 14375845 - COPIA2-LTR_OS 6433 0.0003 (1/2983) 0 * Os_TE_442622 Os_TE_442620 Chr3 14374870 14374869 + STOWAWAY1_OS 149 0.0007 (2/2973) 0 * Os_TE_442619 Os_TE_442619 Chr3 14374869 14374870 + ORSgTEMT01701286 153 0.0007 (2/2979) 0 * Os_TE_442620 Os_TE_442618 Chr3 14374670 14374669 - ORSgTEMT01600639 228 0.0007 (2/2987) 0 * * Os_TE_442614 Chr3 14372295 14372296 - ORSgTEMT01600639 228 0.0007 (2/2914) 0 * * Os_TE_442608 Chr3 14370635 14370634 + ORSgTETNOOT00221 261 0.0047 (14/2997) 0 * * Os_TE_442599 Chr3 14363640 14363639 + STOWAWAY1_OS 149 0.0003 (1/2942) 0 * * Os_TE_442589 Chr3 14358067 14358068 + ORSiTERTOOT00296 5553 0.0007 (2/2990) 0 * Os_TE_442588 Os_TE_442588 Chr3 14358063 14358062 - SC-3_LTR 5748 0.0007 (2/2991) 0 * Os_TE_442589 Os_TE_442555 Chr3 14347721 14347720 + ORSgTEMT00901138 254 0.0003 (1/2969) 0 * * Os_TE_442533 Chr3 14345999 14346000 + ORSgTETNOOT01930 140 0.0007 (2/2989) 0 * * Os_TE_442532 Chr3 14345765 14345766 - ORSgTETN00200001 10994 0.0010 (3/2998) 0 * Os_TE_442531 Os_TE_442531 Chr3 14345763 14345762 + SPMLIKE 10989 0.0010 (3/2998) 0 * Os_TE_442532 Os_TE_442530 Chr3 14343903 14343904 + ORSiTERTOOT00296 5553 0.0107 (32/2985) 0 * Os_TE_442529 Os_TE_442529 Chr3 14343899 14343898 - SC-3_LTR 5748 0.0104 (31/2985) 0 * Os_TE_442530 Os_TE_442524 Chr3 14341058 14341059 - SC-3_LTR 5748 0.0003 (1/2989) 0 * Os_TE_442523 Os_TE_442523 Chr3 14341054 14341053 + ORSiTERTOOT00296 5553 0.0003 (1/2989) 0 * Os_TE_442524 Os_TE_442508 Chr3 14328271 14328270 + SZ-44LTR 1408 0.0008 (2/2657) 0 * * Os_TE_442504 Chr3 14326915 14326916 - TELIA 141 0.0003 (1/2955) 0 * Os_TE_442503 Os_TE_442503 Chr3 14326907 14326906 + TELIA 141 0.0004 (1/2701) 0 * Os_TE_442504 Os_TE_442482 Chr3 14320208 14320209 - SC-3_LTR 5748 0.0003 (1/2971) 0 * Os_TE_442481 Os_TE_442481 Chr3 14320204 14320203 + ORSiTERTOOT00296 5553 0.0003 (1/2967) 0 * Os_TE_442482 Os_TE_442480 Chr3 14319023 14319024 - SC-8_LTR 4951 0.0003 (1/2991) 0 * Os_TE_442479 Os_TE_442479 Chr3 14319019 14319018 + SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_442480 Os_TE_442457 Chr3 14307411 14307412 + MPING 430 0.0003 (1/2984) 0 * * Os_TE_442450 Chr3 14306282 14306281 + INDITTO 263 0.0017 (5/2949) 0 * * Os_TE_442420 Chr3 14295534 14295535 + COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_442419 Os_TE_442419 Chr3 14295530 14295529 - COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_442420 Os_TE_442417 Chr3 14293402 14293609 + ORSgTEMT01601122 212 0.3620 (1076/2972) 1 Intact * Os_TE_442415 Chr3 14289360 14289361 - ORSgTEMT00100811 332 0.0142 (16/1126) 0 * * Os_TE_442394 Chr3 14276858 14276857 + TREP220 109 0.6317 (1818/2878) 0 * Os_TE_442393 Os_TE_442393 Chr3 14276856 14276857 - STOWAWAY15_OS 145 0.6510 (1927/2960) 0 * Os_TE_442394 Os_TE_442392 Chr3 14276592 14276593 - RIREX_LTR 8828 0.0010 (3/2966) 0 * Os_TE_442391 Os_TE_442391 Chr3 14276588 14276587 + RIREX_LTR 8828 0.0010 (3/2968) 0 * Os_TE_442392 Os_TE_442390 Chr3 14276287 14276286 + ORSgTEMT01700632 122 0.6408 (1873/2923) 0 * * Os_TE_442387 Chr3 14275204 14274965 - STOWAWAY41_OS 264 0.3758 (1064/2831) 1 Intact * Os_TE_442380 Chr3 14274907 14274906 + AMYLTP 383 0.0008 (2/2506) 0 * * Os_TE_442379 Chr3 14274894 14274552 - NDNA2TNA_OS 346 0.3899 (1063/2726) 1 Intact Os_TE_442376 Os_TE_442376 Chr3 14274550 14274889 - ORSgTEMT00101341 314 0.4005 (1079/2694) 1 Intact Os_TE_442379 Os_TE_442375 Chr3 14274042 14274041 + STOWAWAY51_OS 246 0.0010 (3/2989) 0 * Os_TE_442374 Os_TE_442374 Chr3 14274036 14274037 + ORSgTEMT01601591 242 0.0013 (4/2985) 0 * Os_TE_442375 Os_TE_442372 Chr3 14272523 14272522 - ORSgTEMT02400246 177 0.0010 (3/2985) 0 * Os_TE_442371 Os_TE_442371 Chr3 14272522 14272523 - TYPEM 227 0.0010 (3/2987) 0 * Os_TE_442372 Os_TE_442345 Chr3 14265940 14265941 - STOWAWAY11_OS 292 0.0023 (7/2993) 0 * * Os_TE_442344 Chr3 14265690 14265689 - ORSgTEMT01601208 238 0.0020 (6/2971) 0 * * Os_TE_442327 Chr3 14264133 14264132 - COPIA3-LTR_OS 5061 0.0057 (7/1224) 0 * * Os_TE_442314 Chr3 14248441 14248440 + COPI2_LTR 4733 0.0003 (1/2989) 0 * * Os_TE_442301 Chr3 14245318 14245317 + ORSgTEMT01602181 239 0.0010 (3/2987) 0 * Os_TE_442300 Os_TE_442300 Chr3 14245313 14245314 - ORSgTEMT01601432 239 0.0007 (2/2945) 0 * Os_TE_442301 Os_TE_442261 Chr3 14238344 14238345 - INDITTO 263 0.0142 (42/2962) 0 * Os_TE_442260 Os_TE_442260 Chr3 14238342 14238341 + INDITTO 263 0.0145 (43/2972) 0 * Os_TE_442261 Os_TE_442227 Chr3 14226374 14225712 - CLOUD-2 711 0.3715 (953/2565) 1 Intact * Os_TE_442225 Chr3 14225511 14225512 - RIREX_LTR 8828 0.0004 (1/2825) 0 * Os_TE_442224 Os_TE_442224 Chr3 14225507 14225506 + RIREX_LTR 8828 0.0004 (1/2851) 0 * Os_TE_442225 Os_TE_442223 Chr3 14225432 14225431 + STOWAWAY51_OS 246 0.6865 (1951/2842) 0 * Os_TE_442222 Os_TE_442222 Chr3 14225426 14225427 - STOWAWAY51_OS 246 0.7017 (2030/2893) 0 * Os_TE_442223 Os_TE_442220 Chr3 14225258 14225259 - COPIA2-LTR_OS 6433 0.0003 (1/2935) 0 * * Os_TE_442211 Chr3 14224271 14224135 - ORSgTETNOOT01767 134 0.3208 (958/2986) 1 Intact * Os_TE_442191 Chr3 14214552 14214553 - SC-3_LTR 5748 0.0003 (1/2990) 0 * Os_TE_442190 Os_TE_442190 Chr3 14214548 14214547 + ORSiTERTOOT00296 5553 0.0003 (1/2988) 0 * Os_TE_442191 Os_TE_442169 Chr3 14210041 14210042 + INDITTO 263 0.1225 (356/2907) 0 * * Os_TE_442167 Chr3 14209814 14209815 + COPI2_LTR 4733 0.0007 (2/2955) 0 * Os_TE_442166 Os_TE_442166 Chr3 14209810 14209809 - COPI2_LTR 4733 0.0007 (2/2954) 0 * Os_TE_442167 Os_TE_442080 Chr3 14166562 14166563 + COPIA2-LTR_OS 6433 0.0020 (6/2994) 0 * Os_TE_442079 Os_TE_442079 Chr3 14166558 14166557 - COPIA2-LTR_OS 6433 0.0020 (6/2995) 0 * Os_TE_442080 Os_TE_442077 Chr3 14164124 14159258 - TESSBIG 4057 0.3791 (1087/2867) 1 Intact Os_TE_442075 Os_TE_442075 Chr3 14159258 14164124 + TESSBIG 4057 0.3568 (990/2775) 1 Intact Os_TE_442077 Os_TE_442049 Chr3 14150230 14150231 + RIRE2_LTR 11306 0.5899 (1761/2985) 0 * * Os_TE_442047 Chr3 14147274 14146964 - TYPEH 309 0.3718 (1101/2961) 1 Intact Os_TE_442045 Os_TE_442045 Chr3 14146961 14147272 + ORSgTEMT01900027 302 0.3655 (1087/2974) 1 Intact Os_TE_442047 Os_TE_442044 Chr3 14143964 14143963 - ORSgTEMT00900760 239 0.6397 (1907/2981) 0 * * Os_TE_442042 Chr3 14143741 14143365 - ORSgTEMT00300075 390 0.8689 (1113/1281) 1 Intact * Os_TE_442037 Chr3 14141725 14141726 + COPI2_LTR 4733 0.0003 (1/2927) 0 * * Os_TE_442035 Chr3 14140871 14140870 + COPI2_LTR 4733 0.0003 (1/2949) 0 * * Os_TE_442024 Chr3 14138282 14138283 - RETROSAT4_LTR 13504 0.0009 (2/2285) 0 * * Os_TE_441978 Chr3 14118491 14118492 + RIREX_LTR 8828 0.1098 (123/1120) 0 * Os_TE_441977 Os_TE_441977 Chr3 14118487 14118486 - RIREX_LTR 8828 0.1122 (126/1123) 0 * Os_TE_441978 Os_TE_441970 Chr3 14114922 14114921 + STOWAWAY21_OS 243 0.1064 (120/1128) 0 * Os_TE_441969 Os_TE_441969 Chr3 14114921 14114922 + ORSgTEMT01601122 212 0.1061 (120/1131) 0 * Os_TE_441970 Os_TE_441956 Chr3 14108376 14108375 + WUWU 113 0.6361 (1874/2946) 0 * * Os_TE_441955 Chr3 14108280 14108281 + COPIA2-LTR_OS 6433 0.0044 (13/2975) 0 * * Os_TE_441938 Chr3 14094687 14094686 + NDNA1TNA_OS 334 0.0108 (32/2962) 0 * * Os_TE_441936 Chr3 14094670 14094420 - ORSgTEMT01400038 210 0.3323 (958/2883) 1 Intact * Os_TE_441928 Chr3 14092838 14092837 - MERMITEJ 1498 0.6361 (1877/2951) 0 * * Os_TE_441913 Chr3 14087215 14087216 + TNR2A 152 0.1003 (120/1197) 0 * Os_TE_441912 Os_TE_441912 Chr3 14087201 14087200 - TNR2A 152 0.1028 (124/1206) 0 * Os_TE_441913 Os_TE_441908 Chr3 14086348 14086347 - MDR2 6967 0.0990 (123/1242) 0 * * Os_TE_441894 Chr3 14079261 14079260 + MuDR2_OS 6770 0.0010 (3/2916) 0 * * Os_TE_441887 Chr3 14078354 14078353 - MDM1 326 0.0024 (7/2959) 0 * * Os_TE_441871 Chr3 14074383 14074384 + ORSgTEMT01702268 154 0.0024 (7/2859) 0 * * Os_TE_441863 Chr3 14070475 14070474 + ORSgTETNOOT00908 242 0.0114 (34/2991) 0 * * Os_TE_441861 Chr3 14070106 14070105 + RETRO1_LTR 8314 0.0419 (125/2982) 0 * * Os_TE_441855 Chr3 14066999 14066998 + ENSPM6_OS 9815 0.0034 (10/2953) 0 * * Os_TE_441854 Chr3 14066880 14066881 + SZ-30_LTR 6377 0.0014 (4/2959) 0 * * Os_TE_441838 Chr3 14061010 14061009 - RETRO1_LTR 8314 0.0122 (36/2960) 0 * * Os_TE_441819 Chr3 14057343 14057342 + ORSiTETNOOT00107 906 0.0135 (38/2808) 0 * * Os_TE_441800 Chr3 14054398 14054397 - EnSpm-10_OS 11265 0.6404 (1822/2845) 0 * * Os_TE_441781 Chr3 14051296 14051295 + ORSiCMCM00100017 5674 0.0126 (36/2866) 0 * * Os_TE_441758 Chr3 14042757 14042758 - MuDR-5_OS 17471 0.0449 (134/2984) 0 * * Os_TE_441744 Chr3 14038717 14038718 - SPMLIKE 10989 0.0101 (30/2966) 0 * * Os_TE_441743 Chr3 14038567 14038568 - MERMITE18B 1306 0.0111 (33/2977) 0 * * Os_TE_441736 Chr3 14036458 14036459 - COPIA3-LTR_OS 5061 0.0120 (36/2996) 0 * * Os_TE_441735 Chr3 14036186 14036187 + EnSpm-14_OS 11216 0.0003 (1/2971) 0 * * Os_TE_441715 Chr3 14029341 14026410 - OSTE33 1012 0.3364 (980/2913) 1 Intact Os_TE_441712 Os_TE_441712 Chr3 14026410 14029341 + OSTE33 1012 0.3361 (976/2904) 1 Intact Os_TE_441715 Os_TE_441690 Chr3 14021282 14021283 - TRUNCATOR 2918 0.5031 (1480/2942) 0 * * Os_TE_441548 Chr3 13943003 13943004 + ORSiTERTOOT00296 5553 0.0003 (1/2950) 0 * Os_TE_441547 Os_TE_441547 Chr3 13942999 13942998 - SC-3_LTR 5748 0.0003 (1/2946) 0 * Os_TE_441548 Os_TE_441540 Chr3 13940481 13940482 - MuDR3_OS 8604 0.6296 (1841/2924) 0 * Os_TE_441539 Os_TE_441539 Chr3 13940473 13940472 - MuDR2_OS 6770 0.6314 (1852/2933) 0 * Os_TE_441540 Os_TE_441537 Chr3 13940395 13940396 - TESS 244 0.0024 (7/2972) 0 * Os_TE_441536 Os_TE_441536 Chr3 13940388 13940387 + ORSgTETNOOT01668 244 0.0020 (6/2975) 0 * Os_TE_441537 Os_TE_441511 Chr3 13937217 13937216 + ORSgTEMT01601591 242 0.0003 (1/2971) 0 * * Os_TE_441509 Chr3 13937187 13937188 + MPING 430 0.0037 (11/2989) 0 * Os_TE_441508 Os_TE_441508 Chr3 13937185 13937184 - MPING 430 0.0037 (11/2991) 0 * Os_TE_441509 Os_TE_441488 Chr3 13932516 13932515 - OSR3_LTR 5201 0.0007 (2/2992) 0 * * Os_TE_441467 Chr3 13917953 13917954 + RIREX_LTR 8828 0.0003 (1/2978) 0 * * Os_TE_441437 Chr3 13912317 13912318 + ORSiTERTOOT00226 792 0.0004 (1/2707) 0 * * Os_TE_441395 Chr3 13894653 13894652 + ORSgTETNOOT02406 265 0.0013 (4/2965) 0 * * Os_TE_441389 Chr3 13892707 13892706 + COPI2_LTR 4733 0.1210 (355/2933) 0 * * Os_TE_441378 Chr3 13885843 13885626 - ORSgTEMT02400246 177 0.3635 (1078/2966) 1 Intact * Os_TE_441362 Chr3 13877800 13877801 - RIREX_LTR 8828 0.0445 (133/2992) 0 * Os_TE_441361 Os_TE_441361 Chr3 13877796 13877795 + RIREX_LTR 8828 0.0437 (131/2996) 0 * Os_TE_441362 Os_TE_441347 Chr3 13861999 13862000 - RETRO1_LTR 8314 0.0047 (14/2969) 0 * Os_TE_441346 Os_TE_441346 Chr3 13861995 13861994 + RETRO1_LTR 8314 0.0047 (14/2975) 0 * Os_TE_441347 Os_TE_441329 Chr3 13849851 13849852 + ORSgTETNOOT00908 242 0.4507 (1348/2991) 0 * Os_TE_441328 Os_TE_441328 Chr3 13849849 13849848 + ORSgTETNOOT02019 240 0.4569 (1366/2990) 0 * Os_TE_441329 Os_TE_441322 Chr3 13846529 13846530 + ORSiTERTOOT00296 5553 0.0007 (2/2962) 0 * Os_TE_441321 Os_TE_441321 Chr3 13846525 13846524 - SC-3_LTR 5748 0.0007 (2/2972) 0 * Os_TE_441322 Os_TE_441287 Chr3 13831212 13830628 + DS-RICE2N 613 0.3507 (1037/2957) 1 Intact Os_TE_441286 Os_TE_441286 Chr3 13830628 13831204 - DS-RICE2N 613 0.3631 (1087/2994) 1 Intact Os_TE_441287 Os_TE_441285 Chr3 13830598 13830599 - TNR2A 152 0.0023 (7/2995) 0 * * Os_TE_441257 Chr3 13807646 13801613 - OSTONOR1_LTR 6440 0.0745 (221/2968) 1 Intact * Os_TE_441256 Chr3 13801381 13807502 + OSTONOR1_LTR 6440 0.0745 (222/2979) 1 Intact * Os_TE_441254 Chr3 13801042 13801043 + STOWAWAY45_OS 266 0.0014 (4/2946) 0 * * Os_TE_441245 Chr3 13795755 13795754 - MPING 430 0.0003 (1/2914) 0 * * Os_TE_441199 Chr3 13773880 13773881 - RETRO1_LTR 8314 0.0034 (10/2963) 0 * Os_TE_441198 Os_TE_441198 Chr3 13773876 13773875 + RETRO1_LTR 8314 0.0034 (10/2966) 0 * Os_TE_441199 Os_TE_441183 Chr3 13770576 13770575 - COPIA2-LTR_OS 6433 0.0003 (1/2940) 0 * * Os_TE_441182 Chr3 13770463 13770462 - ORSgTEMT02000003 197 0.5104 (1522/2982) 0 * * Os_TE_441178 Chr3 13767822 13767823 - RIRE2_LTR 11306 0.0030 (9/2996) 0 * Os_TE_441177 Os_TE_441177 Chr3 13767818 13767817 + RIRE2_LTR 11306 0.0033 (10/2996) 0 * Os_TE_441178 Os_TE_441169 Chr3 13766870 13766869 - TEOS1 476 0.0023 (7/2993) 0 * Os_TE_441168 Os_TE_441168 Chr3 13766865 13766866 + TEOS1 476 0.0020 (6/2996) 0 * Os_TE_441169 Os_TE_441111 Chr3 13742036 13742037 - MPING 430 0.0003 (1/2983) 0 * Os_TE_441110 Os_TE_441110 Chr3 13742034 13742033 + MPING 430 0.0003 (1/2990) 0 * Os_TE_441111 Os_TE_441106 Chr3 13741186 13741187 - RIREX_LTR 8828 0.0003 (1/2960) 0 * Os_TE_441105 Os_TE_441105 Chr3 13741182 13741181 + RIREX_LTR 8828 0.0003 (1/2958) 0 * Os_TE_441106 Os_TE_441099 Chr3 13737586 13737587 - SC-3_LTR 5748 0.0013 (4/2994) 0 * Os_TE_441098 Os_TE_441098 Chr3 13737582 13737581 + ORSiTERTOOT00296 5553 0.0017 (5/2997) 0 * Os_TE_441099 Os_TE_441072 Chr3 13722132 13722133 - SC-3_LTR 5748 0.0007 (2/2998) 0 * Os_TE_441071 Os_TE_441071 Chr3 13722128 13722127 + ORSiTERTOOT00296 5553 0.0007 (2/2998) 0 * Os_TE_441072 Os_TE_441057 Chr3 13718264 13718263 + ORSgTEMT01601122 212 0.0013 (4/2968) 0 * * Os_TE_441050 Chr3 13713857 13713856 - STOWAWAY1_OS 149 0.0020 (6/2978) 0 * Os_TE_441049 Os_TE_441049 Chr3 13713856 13713857 + ORSgTEMT01702004 154 0.0024 (7/2967) 0 * Os_TE_441050 Os_TE_441045 Chr3 13710989 13710988 + NDNA1TNA_OS 334 0.0007 (2/2962) 0 * Os_TE_441044 Os_TE_441044 Chr3 13710984 13710985 - NDNA1TNA_OS 334 0.0007 (2/2952) 0 * Os_TE_441045 Os_TE_441038 Chr3 13707993 13707994 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_441037 Os_TE_441037 Chr3 13707989 13707988 - COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_441038 Os_TE_441036 Chr3 13707799 13707800 - MuDR4_OS 7610 0.0007 (2/2994) 0 * * Os_TE_441020 Chr3 13705443 13705444 - RIREX_LTR 8828 0.0304 (91/2991) 0 * Os_TE_441019 Os_TE_441019 Chr3 13705439 13705438 + RIREX_LTR 8828 0.0304 (91/2991) 0 * Os_TE_441020 Os_TE_441014 Chr3 13704414 13704415 + RETROSAT2LTR 12796 0.0010 (3/2998) 0 * Os_TE_441013 Os_TE_441013 Chr3 13704412 13704411 - RETROSAT2LTR 12796 0.0010 (3/2996) 0 * Os_TE_441014 Os_TE_440995 Chr3 13697932 13698486 + MuDR4_OS 7610 0.3331 (975/2927) 1 Intact * Os_TE_440994 Chr3 13697751 13697750 + ORSgTERT00200392 431 0.3381 (969/2866) 0.83 * * Os_TE_440978 Chr3 13682354 13682353 - ORSgTEMT01601208 238 0.0027 (8/2952) 0 * Os_TE_440977 Os_TE_440977 Chr3 13682352 13682353 + ORSgTEMT01600102 237 0.0024 (7/2945) 0 * Os_TE_440978 Os_TE_440976 Chr3 13682050 13682051 + RIREX_LTR 8828 0.0312 (92/2952) 0 * Os_TE_440975 Os_TE_440975 Chr3 13682046 13682045 - RIREX_LTR 8828 0.0310 (92/2965) 0 * Os_TE_440976 Os_TE_440962 Chr3 13678374 13678375 + OSTONOR1_LTR 6440 0.0301 (90/2991) 0 * Os_TE_440961 Os_TE_440961 Chr3 13678370 13678369 - OSTONOR1_LTR 6440 0.0304 (91/2992) 0 * Os_TE_440962 Os_TE_440960 Chr3 13678223 13678222 + CACTA-B 1103 0.0010 (3/2950) 0 * Os_TE_440959 Os_TE_440959 Chr3 13678222 13678223 - ORSgTETN00200001 10994 0.0007 (2/2950) 0 * Os_TE_440960 Os_TE_440940 Chr3 13666695 13666696 - F770 284 0.2255 (660/2927) 0 * Os_TE_440939 Os_TE_440939 Chr3 13666693 13666692 + F770 284 0.2294 (674/2938) 0 * Os_TE_440940 Os_TE_440933 Chr3 13662847 13662846 + TWIFB1 3737 0.0004 (1/2856) 0 * * Os_TE_440930 Chr3 13662121 13662120 + COPIA2-LTR_OS 6433 0.0007 (2/2996) 0 * * Os_TE_440929 Chr3 13661289 13661288 + SINE1OS 127 0.0020 (6/2980) 0 * * Os_TE_440916 Chr3 13653310 13653309 + OLO24B 335 0.0020 (6/2977) 0 * * Os_TE_440909 Chr3 13650616 13650615 - ORSgTEMT01601432 239 0.0017 (5/2989) 0 * Os_TE_440908 Os_TE_440908 Chr3 13650613 13650614 + ORSgTEMT01602181 239 0.0017 (5/2988) 0 * Os_TE_440909 Os_TE_440907 Chr3 13650033 13650032 + DITTO 244 0.0020 (6/2957) 0 * * Os_TE_440884 Chr3 13637971 13637970 + STOLAB 312 0.0024 (7/2972) 0 * * Os_TE_440881 Chr3 13636222 13636221 - ORSgTETNOOT01243 137 0.0020 (6/2984) 0 * Os_TE_440880 Os_TE_440880 Chr3 13636221 13636222 - ORSgTEMT00501356 145 0.0023 (7/2980) 0 * Os_TE_440881 Os_TE_440852 Chr3 13614360 13614361 + TRUNCATOR2_LTR 2904 0.6605 (1957/2963) 0 * * Os_TE_440844 Chr3 13611516 13611076 - RIRE2_LTR 11306 0.1055 (312/2958) 1 Solo_LTR Os_TE_440843 Os_TE_440843 Chr3 13611076 13611516 + RIRE2_LTR 11306 0.1106 (329/2974) 1 Solo_LTR Os_TE_440844 Os_TE_440835 Chr3 13608126 13608127 + ORSgTEMT00600376 329 0.0379 (91/2400) 0 * Os_TE_440834 Os_TE_440834 Chr3 13608122 13608121 + ORSgTEMT00600272 361 0.0458 (112/2444) 0 * Os_TE_440835 Os_TE_440825 Chr3 13601127 13601128 + DS-RICE3N 525 0.1453 (416/2864) 0 * * Os_TE_440822 Chr3 13599240 13599241 + SPMLIKE 10989 0.0037 (11/2992) 0 * Os_TE_440821 Os_TE_440821 Chr3 13599238 13599237 - ORSgTETN00200001 10994 0.0030 (9/2989) 0 * Os_TE_440822 Os_TE_440820 Chr3 13599179 13599180 + ORSgTETNOOT00908 242 0.0368 (110/2992) 0 * * Os_TE_440818 Chr3 13599002 13599003 + MPING 430 0.0044 (13/2988) 0 * Os_TE_440817 Os_TE_440817 Chr3 13599000 13598999 - MPING 430 0.0044 (13/2986) 0 * Os_TE_440818 Os_TE_440786 Chr3 13562550 13562551 - MuDR4_OS 7610 0.0034 (10/2900) 0 * Os_TE_440785 Os_TE_440785 Chr3 13562543 13562542 - MuDR4_OS 7610 0.0034 (10/2899) 0 * Os_TE_440786 Os_TE_440246 Chr3 13329034 13329035 + ORSiTERTOOT00028 8600 0.0020 (6/2992) 0 * * Os_TE_440226 Chr3 13316343 13316342 - ORSiTEMT01300001 950 0.0003 (1/2991) 0 * * Os_TE_440225 Chr3 13315298 13315299 + ORSiCMCM00100019 2717 0.0007 (2/2974) 0 * Os_TE_440224 Os_TE_440224 Chr3 13315294 13315293 - TRUNCATOR2_LTR 2904 0.0007 (2/2995) 0 * Os_TE_440225 Os_TE_440214 Chr3 13314352 13314353 + RIREX_LTR 8828 0.0003 (1/2984) 0 * Os_TE_440213 Os_TE_440213 Chr3 13314348 13314347 - RIREX_LTR 8828 0.0003 (1/2988) 0 * Os_TE_440214 Os_TE_440199 Chr3 13313226 13313227 + OSTE33 1012 0.4302 (1270/2952) 0 * Os_TE_440198 Os_TE_440198 Chr3 13313217 13313216 + OSTE33 1012 0.3893 (1080/2774) 0 * Os_TE_440199 Os_TE_440189 Chr3 13311006 13311005 - COPIA2-LTR_OS 6433 0.0003 (1/2971) 0 * * Os_TE_440153 Chr3 13287075 13287076 - RIREX_LTR 8828 0.0003 (1/2945) 0 * Os_TE_440152 Os_TE_440152 Chr3 13287071 13287070 + RIREX_LTR 8828 0.0003 (1/2936) 0 * Os_TE_440153 Os_TE_440148 Chr3 13285301 13285105 + ORSgTEMT02000038 194 0.7917 (2330/2943) 1 Intact * Os_TE_440136 Chr3 13280544 13280545 + COPIA2-LTR_OS 6433 0.0003 (1/2973) 0 * * Os_TE_440108 Chr3 13271364 13265146 - ORSiTERT00100062 5674 0.2928 (875/2988) 1 Intact Os_TE_440102 Os_TE_440102 Chr3 13265146 13271364 + OSTONOR1_LTR 6440 0.2895 (862/2978) 1 Intact Os_TE_440108 Os_TE_440095 Chr3 13261684 13261925 - ORSiTETNOOT00015 241 0.3589 (884/2463) 1 Intact * Os_TE_440093 Chr3 13261164 13261163 + TRUNCATOR 2918 0.1846 (552/2991) 0 * Os_TE_440092 Os_TE_440092 Chr3 13261163 13261164 - TRUNCATOR 2918 0.1807 (540/2989) 0 * Os_TE_440093 Os_TE_440080 Chr3 13255787 13255788 + RIREX_LTR 8828 0.0003 (1/2990) 0 * Os_TE_440079 Os_TE_440079 Chr3 13255783 13255782 - RIRE2_LTR 11306 0.0003 (1/2992) 0 * Os_TE_440080 Os_TE_440068 Chr3 13249201 13249202 - ORSgTEMT00502194 153 0.0003 (1/2946) 0 * * Os_TE_440060 Chr3 13240289 13240290 + OLO24 345 0.0007 (2/2991) 0 * * Os_TE_440054 Chr3 13234106 13234107 - RETRO2A_LTR 12895 0.0010 (3/2992) 0 * Os_TE_440053 Os_TE_440053 Chr3 13234102 13234101 + RETRO1_LTR 8314 0.0010 (3/2994) 0 * Os_TE_440054 Os_TE_440042 Chr3 13225816 13225815 + ORSiTERTOOT00226 792 0.5064 (1503/2968) 0 * * Os_TE_440037 Chr3 13220061 13220060 + ORSgTEMT05100009 236 0.0003 (1/2992) 0 * * Os_TE_440003 Chr3 13202033 13202032 + RIREX_LTR 8828 0.0010 (3/2977) 0 * * Os_TE_439978 Chr3 13193564 13193565 + COPIA2-LTR_OS 6433 0.2901 (862/2971) 0 * Os_TE_439977 Os_TE_439977 Chr3 13193560 13193559 - COPIA2-LTR_OS 6433 0.2911 (869/2985) 0 * Os_TE_439978 Os_TE_439940 Chr3 13185453 13185454 - RIREX_LTR 8828 0.0007 (2/2980) 0 * Os_TE_439939 Os_TE_439939 Chr3 13185449 13185448 + RIREX_LTR 8828 0.0007 (2/2982) 0 * Os_TE_439940 Os_TE_439929 Chr3 13180625 13180626 + RIREX_LTR 8828 0.0007 (2/2974) 0 * Os_TE_439928 Os_TE_439928 Chr3 13180621 13180620 - RIREX_LTR 8828 0.0007 (2/2970) 0 * Os_TE_439929 Os_TE_439926 Chr3 13177975 13177976 - MuDR3_OS 8604 0.0595 (177/2977) 0 * Os_TE_439925 Os_TE_439925 Chr3 13177966 13177965 - MuDR3_OS 8604 0.0595 (177/2973) 0 * Os_TE_439926 Os_TE_439911 Chr3 13171875 13171874 - COPI2_LTR 4733 0.0003 (1/2985) 0 * * Os_TE_439910 Chr3 13171744 13171745 - INDITTO 263 0.0017 (5/2981) 0 * Os_TE_439909 Os_TE_439909 Chr3 13171742 13171741 + INDITTO 263 0.0013 (4/2973) 0 * Os_TE_439910 Os_TE_439902 Chr3 13170879 13170880 - COPIA2-LTR_OS 6433 0.0003 (1/2942) 0 * * Os_TE_439900 Chr3 13170150 13170149 + DS-RICE4N 715 0.0007 (2/2960) 0 * * Os_TE_439897 Chr3 13169402 13169401 + STOWAWAY21_OS 243 0.0020 (6/2972) 0 * Os_TE_439896 Os_TE_439896 Chr3 13169401 13169402 + ORSgTEMT01601122 212 0.0024 (7/2977) 0 * Os_TE_439897 Os_TE_439894 Chr3 13168728 13168729 + COPIA2-LTR_OS 6433 0.0017 (5/2981) 0 * Os_TE_439893 Os_TE_439893 Chr3 13168724 13168723 - COPIA2-LTR_OS 6433 0.0023 (7/2981) 0 * Os_TE_439894 Os_TE_439890 Chr3 13161860 13161861 - TELIA 141 0.0007 (2/2980) 0 * * Os_TE_439825 Chr3 13141030 13141031 - ORSgTETN00200001 10994 0.0104 (27/2584) 0 * Os_TE_439824 Os_TE_439824 Chr3 13141028 13141027 + SPMLIKE 10989 0.0664 (183/2755) 0 * Os_TE_439825 Os_TE_439815 Chr3 13137913 13137914 - ORSgTERT00201216 11284 0.0940 (279/2968) 0 * * Os_TE_439811 Chr3 13134370 13134371 + AMYLTP 383 0.0003 (1/2991) 0 * * Os_TE_439764 Chr3 13120420 13120419 - SZ-37_LTR 12001 0.0024 (7/2911) 0 * * Os_TE_439745 Chr3 13111705 13111706 - SC-8_LTR 4951 0.0003 (1/2986) 0 * Os_TE_439744 Os_TE_439744 Chr3 13111701 13111700 + SC-8_LTR 4951 0.0003 (1/2988) 0 * Os_TE_439745 Os_TE_439727 Chr3 13101161 13101162 + SC-8_LTR 4951 0.0254 (76/2991) 0 * Os_TE_439726 Os_TE_439726 Chr3 13101157 13101156 - SC-8_LTR 4951 0.0261 (78/2990) 0 * Os_TE_439727 Os_TE_439713 Chr3 13095071 13095070 + TWIFBIG 3567 0.0013 (4/2976) 0 * * Os_TE_439701 Chr3 13093804 13093803 + STOWAWAY51_OS 246 0.0140 (38/2712) 0 * Os_TE_439700 Os_TE_439700 Chr3 13093798 13093799 - STOWAWAY51_OS 246 0.0128 (38/2976) 0 * Os_TE_439701 Os_TE_439684 Chr3 13087525 13087526 - COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_439683 Os_TE_439683 Chr3 13087521 13087520 + COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_439684 Os_TE_439664 Chr3 13075354 13075355 + AMYLTP 383 0.0024 (7/2915) 0 * * Os_TE_439649 Chr3 13068845 13068846 - ORSgTEMT02400246 177 0.0003 (1/2997) 0 * * Os_TE_439645 Chr3 13064797 13064798 - TEMPINDAS 4259 0.0017 (5/2928) 0 * * Os_TE_439602 Chr3 13047786 13047787 + STOWAWAY13_OS 251 0.0003 (1/2943) 0 * * Os_TE_439557 Chr3 13029847 13029846 - WUJI 257 0.0010 (3/2980) 0 * * Os_TE_439553 Chr3 13027136 13027137 - NDNA1TNA_OS 334 0.0047 (14/2956) 0 * * Os_TE_439542 Chr3 13022374 13022373 + ORSgTERT00200063 5773 0.0003 (1/2929) 0 * * Os_TE_439535 Chr3 13019943 13019944 - Mudr5_OS 5952 0.0024 (7/2929) 0 * * Os_TE_439533 Chr3 13019199 13019198 + STOWAWAY49_OS 241 0.0027 (8/2941) 0 * * Os_TE_439526 Chr3 13017583 13017584 + SETARIA1 1293 0.0020 (6/2974) 0 * Os_TE_439525 Os_TE_439525 Chr3 13017577 13017576 + SETARIA2 1142 0.0020 (6/2975) 0 * Os_TE_439526 Os_TE_439524 Chr3 13017408 13017409 + ORSgTETNOOT02316 263 0.0030 (9/2981) 0 * Os_TE_439523 Os_TE_439523 Chr3 13017406 13017405 + ORSgTETNOOT00221 261 0.0024 (7/2976) 0 * Os_TE_439524 Os_TE_439501 Chr3 13011091 13011092 - MDR2 6967 0.0003 (1/2971) 0 * * Os_TE_439498 Chr3 13010788 13010789 + SPMLIKE 10989 0.0003 (1/2988) 0 * Os_TE_439497 Os_TE_439497 Chr3 13010786 13010785 - ORSgTETN00200001 10994 0.0003 (1/2990) 0 * Os_TE_439498 Os_TE_439495 Chr3 13008181 13008182 - COPIA2-LTR_OS 6433 0.0010 (3/2994) 0 * Os_TE_439494 Os_TE_439494 Chr3 13008177 13008176 + COPIA2-LTR_OS 6433 0.0010 (3/2996) 0 * Os_TE_439495 Os_TE_439485 Chr3 13006204 13006466 + INDITTO 263 0.7309 (2181/2984) 1 Intact * Os_TE_439471 Chr3 13002387 13002386 - CLOUD 734 0.0031 (2/650) -1 * * Os_TE_439460 Chr3 12995063 12995064 + ORSiTERTOOT00296 5553 0.0023 (7/2994) 0 * Os_TE_439459 Os_TE_439459 Chr3 12995059 12995058 - SC-3_LTR 5748 0.0023 (7/2992) 0 * Os_TE_439460 Os_TE_439444 Chr3 12980137 12980138 - SC-8_LTR 4951 0.0003 (1/2989) 0 * Os_TE_439443 Os_TE_439443 Chr3 12980133 12980132 + ORSiTERTOOT00381 4988 0.0003 (1/2993) 0 * Os_TE_439444 Os_TE_439430 Chr3 12973293 12973294 + RETROSAT2LTR 12796 0.0629 (188/2991) 0 * Os_TE_439429 Os_TE_439429 Chr3 12973291 12973290 - RETROSAT2LTR 12796 0.0638 (191/2995) 0 * Os_TE_439430 Os_TE_439422 Chr3 12970838 12970839 + GYPSY-A_LTR 8951 0.0020 (6/2998) 0 * Os_TE_439421 Os_TE_439421 Chr3 12970834 12970833 - GYPSY-A_LTR 8951 0.0020 (6/2997) 0 * Os_TE_439422 Os_TE_439416 Chr3 12966478 12966477 + ORSgTERT00200961 124 0.0014 (4/2962) 0 * * Os_TE_439410 Chr3 12961348 12961349 + CASTAWAY-3 314 0.0013 (4/2995) 0 * Os_TE_439409 Os_TE_439409 Chr3 12961346 12961345 - CASTAWAY-3 314 0.0013 (4/2992) 0 * Os_TE_439410 Os_TE_439388 Chr3 12952498 12952499 + CASTAWAY-3 314 0.0010 (3/2961) 0 * * Os_TE_439386 Chr3 12945975 12945976 - SZ-COM 1308 0.0003 (1/2914) 0 * * Os_TE_439384 Chr3 12945086 12945085 - RPO_OS 1983 0.0010 (3/2973) 0 * * Os_TE_439373 Chr3 12941022 12941023 - SZ-35LTR 3853 0.0124 (37/2985) 0 * Os_TE_439372 Os_TE_439372 Chr3 12941018 12941017 + RETROSAT4_LTR 13504 0.0117 (35/2988) 0 * Os_TE_439373 Os_TE_439369 Chr3 12940772 12940030 - CLOUD 734 0.7578 (2197/2899) 1 Intact Os_TE_439366 Os_TE_439366 Chr3 12940030 12940772 - CLOUD 734 0.7513 (2127/2831) 1 Intact Os_TE_439369 Os_TE_439364 Chr3 12939367 12939366 - ORSgTEMT01400022 212 0.2636 (777/2948) 0 * * Os_TE_439359 Chr3 12938935 12938936 - ORSgTEMT01700983 152 0.1454 (370/2545) 0 * * Os_TE_439347 Chr3 12936226 12936227 - ORSgTERT00200104 272 0.0004 (1/2812) 0 * * Os_TE_439335 Chr3 12932357 12933497 - CACTA-H 1152 0.7469 (2184/2924) 1 Intact * Os_TE_439332 Chr3 12932224 12932084 + TELIA 141 0.7315 (2144/2931) 1 Intact Os_TE_439331 Os_TE_439331 Chr3 12932084 12932224 + TELIA 141 0.7330 (2161/2948) 1 Intact Os_TE_439332 Os_TE_439314 Chr3 12928427 12928426 - CACTA-I 1124 0.0021 (6/2813) 0 * Os_TE_439313 Os_TE_439313 Chr3 12928426 12928427 + CACTA-D 1038 0.0021 (6/2821) 0 * Os_TE_439314 Os_TE_439312 Chr3 12928224 12928225 + SETARIA2 1142 0.0028 (8/2879) 0 * Os_TE_439311 Os_TE_439311 Chr3 12928220 12928219 + SETARIA2 1142 0.0028 (8/2868) 0 * Os_TE_439312 Os_TE_439310 Chr3 12928048 12928047 - ORSgTEMT01601208 238 0.0013 (4/2976) 0 * * Os_TE_439297 Chr3 12922541 12922542 - INDITTO 263 0.0060 (18/2993) 0 * Os_TE_439296 Os_TE_439296 Chr3 12922539 12922538 + INDITTO 263 0.0057 (17/2992) 0 * Os_TE_439297 Os_TE_439280 Chr3 12916703 12916441 - INDITTO 263 0.7515 (2193/2918) 1 Intact * Os_TE_439276 Chr3 12916199 12916396 - ORSgTEMT02000041 194 0.7443 (2131/2863) 1 Intact * Os_TE_439261 Chr3 12913150 12913151 - RETRO2_LTR 12874 0.0023 (7/2984) 0 * * Os_TE_439256 Chr3 12912063 12912064 - RIREX_LTR 8828 0.0010 (3/2965) 0 * * Os_TE_439246 Chr3 12909318 12909317 + ORSgTEMT01700789 143 0.0021 (6/2886) 0 * * Os_TE_439244 Chr3 12909240 12908824 + ORSgTEMT00300069 394 0.8138 (2207/2712) 1 Intact Os_TE_439239 Os_TE_439239 Chr3 12908816 12909234 - ORSgTEMT00300160 419 0.8173 (2394/2929) 1 Intact Os_TE_439244 Os_TE_439230 Chr3 12905320 12905321 + COPIA2-LTR_OS 6433 0.0034 (10/2976) 0 * Os_TE_439229 Os_TE_439229 Chr3 12905316 12905315 - COPIA2-LTR_OS 6433 0.0037 (11/2974) 0 * Os_TE_439230 Os_TE_439228 Chr3 12905241 12905240 - SUSU 279 0.0023 (7/2983) 0 * * Os_TE_439226 Chr3 12904443 12904444 - OLO24 345 0.0017 (5/2992) 0 * Os_TE_439225 Os_TE_439225 Chr3 12904441 12904440 + OLO24 345 0.0017 (5/2988) 0 * Os_TE_439226 Os_TE_439207 Chr3 12898088 12898087 + ORSgTEMT00100272 356 0.0027 (8/2978) 0 * * Os_TE_439198 Chr3 12895118 12895119 + XIKE 594 0.0051 (15/2958) 0 * * Os_TE_439152 Chr3 12871880 12871881 - SZ-22_LTR 4403 0.0003 (1/2964) 0 * Os_TE_439151 Os_TE_439151 Chr3 12871876 12871875 + ORSiTERTOOT00226 792 0.0003 (1/2909) 0 * Os_TE_439152 Os_TE_439147 Chr3 12867635 12867634 + ORSgTETNOOT00908 242 0.0003 (1/2986) 0 * * Os_TE_439140 Chr3 12864858 12864857 + ORSgTEMT01400012 212 0.0060 (18/2992) 0 * * Os_TE_439122 Chr3 12854213 12854214 - MPING 430 0.0003 (1/2990) 0 * Os_TE_439121 Os_TE_439121 Chr3 12854211 12854210 + MPING 430 0.0003 (1/2992) 0 * Os_TE_439122 Os_TE_439106 Chr3 12851682 12851681 + RETRO1_LTR 8314 0.0004 (1/2612) 0 * * Os_TE_439094 Chr3 12849771 12849772 - INDITTO 263 0.0007 (2/2993) 0 * * Os_TE_439059 Chr3 12833190 12833191 - COPI1_LTR 4721 0.0017 (5/2977) 0 * * Os_TE_439057 Chr3 12829301 12829300 - ORSgTEMT01702177 127 0.0023 (7/2988) 0 * Os_TE_439056 Os_TE_439056 Chr3 12829285 12829286 + ORSgTEMT01701115 144 0.0033 (10/2989) 0 * Os_TE_439057 Os_TE_439055 Chr3 12828736 12828737 - AMYLTP 383 0.0367 (109/2968) 0 * * Os_TE_439050 Chr3 12827348 12827349 - SC-3_LTR 5748 0.0003 (1/2993) 0 * Os_TE_439049 Os_TE_439049 Chr3 12827344 12827343 + ORSiTERTOOT00296 5553 0.0003 (1/2991) 0 * Os_TE_439050 Os_TE_439042 Chr3 12822113 12822114 + MPING 430 0.0013 (4/2976) 0 * Os_TE_439041 Os_TE_439041 Chr3 12822111 12822110 - MPING 430 0.0013 (4/2981) 0 * Os_TE_439042 Os_TE_439035 Chr3 12817978 12817979 + OSTE14 885 0.0003 (1/2989) 0 * * Os_TE_439010 Chr3 12806893 12806601 - NDNA2TNA_OS 346 0.8299 (2463/2968) 1 Intact * Os_TE_439005 Chr3 12806385 12806386 - STOWAWAY51_OS 246 0.0244 (73/2988) 0 * * Os_TE_438980 Chr3 12800002 12800003 - ORSgTETNOOT00053 263 0.0401 (120/2990) 0 * Os_TE_438979 Os_TE_438979 Chr3 12800000 12799999 - INDITTO 263 0.0402 (120/2988) 0 * Os_TE_438980 Os_TE_438971 Chr3 12793627 12793628 + AMYLTP 383 0.0023 (7/2992) 0 * Os_TE_438970 Os_TE_438970 Chr3 12793619 12793618 - AMYLTP 383 0.0027 (8/2991) 0 * Os_TE_438971 Os_TE_438927 Chr3 12772623 12772622 - OSTE20 496 0.0007 (2/2878) 0 * * Os_TE_438889 Chr3 12769231 12769232 - MPING 430 0.0020 (6/2977) 0 * * Os_TE_438887 Chr3 12765609 12765610 + TWIF 586 0.0007 (2/2986) 0 * Os_TE_438886 Os_TE_438886 Chr3 12765602 12765601 - ORSiTETNOOT00134 607 0.0007 (2/2986) 0 * Os_TE_438887 Os_TE_438851 Chr3 12755636 12755635 + DS-RICE3N 525 0.3828 (1088/2842) 0 * * Os_TE_438848 Chr3 12754831 12754832 - TYPEM 227 0.0007 (2/2959) 0 * * Os_TE_438803 Chr3 12736185 12735756 - MPING 430 0.0588 (176/2992) 1 Intact Os_TE_438802 Os_TE_438802 Chr3 12735756 12736185 + MPING 430 0.0588 (176/2995) 1 Intact Os_TE_438803 Os_TE_438801 Chr3 12735681 12735680 - SINE03_OS 360 0.5484 (1637/2985) 0 * * Os_TE_438781 Chr3 12730198 12730197 + STOWAWAY47_OS 148 0.0017 (5/2990) 0 * * Os_TE_438763 Chr3 12715360 12715359 + MERMITEB 1610 0.0013 (4/2992) 0 * * Os_TE_438759 Chr3 12714686 12714687 - SZ-9LTR 965 0.0007 (2/2994) 0 * Os_TE_438758 Os_TE_438758 Chr3 12714682 12714681 + SZ-9LTR 965 0.0007 (2/2992) 0 * Os_TE_438759 Os_TE_438754 Chr3 12711169 12710809 + COPI2_LTR 4733 0.4527 (1344/2969) 1 Intact Os_TE_438752 Os_TE_438752 Chr3 12710808 12711169 - COPI2_LTR 4733 0.4597 (1375/2991) 1 Intact Os_TE_438754 Os_TE_438745 Chr3 12708012 12708011 - ORSgTERT00201216 11284 0.0007 (2/2790) 0 * * Os_TE_438743 Chr3 12707288 12707287 - ORMOSIA 482 0.0017 (5/2992) 0 * * Os_TE_438741 Chr3 12706428 12706427 + MUDRN1_OS 764 0.0010 (3/2985) 0 * * Os_TE_438740 Chr3 12706187 12706188 - ORSgTETN00100078 209 0.0003 (1/2994) 0 * * Os_TE_438726 Chr3 12703347 12703348 - ORSgTERT00200703 412 0.0003 (1/2989) 0 * * Os_TE_438705 Chr3 12692161 12692162 - STOWAWAY1_OS 149 0.0017 (5/2991) 0 * * Os_TE_438703 Chr3 12691614 12691615 + ORSgTERT00200164 99 0.5562 (1668/2999) 0 * * Os_TE_438696 Chr3 12682460 12682459 + SZ-40LTR 2465 0.0003 (1/2997) 0 * * Os_TE_438694 Chr3 12679744 12679745 + COPIA2-LTR_OS 6433 0.0007 (2/2997) 0 * Os_TE_438693 Os_TE_438693 Chr3 12679740 12679739 - COPIA2-LTR_OS 6433 0.0007 (2/2993) 0 * Os_TE_438694 Os_TE_438687 Chr3 12674491 12674490 + ORSgTEMT01700715 134 0.0020 (6/2982) 0 * * Os_TE_438680 Chr3 12673640 12673639 - OSR3_LTR 5201 0.0003 (1/2975) 0 * * Os_TE_438679 Chr3 12673519 12673257 - INDITTO 263 0.4619 (1371/2968) 1 Intact Os_TE_438677 Os_TE_438677 Chr3 12673257 12673519 + INDITTO 263 0.4617 (1369/2965) 1 Intact Os_TE_438679 Os_TE_438665 Chr3 12671115 12671116 - ENSPM4_OS 11610 0.0379 (112/2953) 0 * * Os_TE_438650 Chr3 12667997 12667998 + ORSgTEMT01400031 216 0.0003 (1/2941) 0 * * Os_TE_438649 Chr3 12667956 12667957 + INDITTO 263 0.0387 (114/2945) 0 * Os_TE_438648 Os_TE_438648 Chr3 12667954 12667953 - INDITTO 263 0.0385 (113/2936) 0 * Os_TE_438649 Os_TE_438630 Chr3 12653468 12653467 + STOWAWAY51_OS 246 0.0020 (6/2967) 0 * Os_TE_438629 Os_TE_438629 Chr3 12653462 12653463 + ORSgTEMT01601591 242 0.0017 (5/2953) 0 * Os_TE_438630 Os_TE_438628 Chr3 12652625 12652626 - STOWAWAY50_OS 174 0.0003 (1/2925) 0 * * Os_TE_438621 Chr3 12650240 12649250 + JOUZHEN 596 0.6095 (1818/2983) 1 Intact Os_TE_438617 Os_TE_438617 Chr3 12649246 12650240 - JOUZHEN 596 0.5666 (1574/2778) -1 Intact Os_TE_438621 Os_TE_438590 Chr3 12638832 12638833 + COPIA2-LTR_OS 6433 0.0007 (2/2993) 0 * Os_TE_438589 Os_TE_438589 Chr3 12638828 12638827 - COPIA2-LTR_OS 6433 0.0007 (2/2995) 0 * Os_TE_438590 Os_TE_438556 Chr3 12625438 12625437 - COPIA2-LTR_OS 6433 0.0010 (3/2862) 0 * * Os_TE_438528 Chr3 12604724 12604725 + ORSiTERTOOT00296 5553 0.0003 (1/2990) 0 * Os_TE_438527 Os_TE_438527 Chr3 12604720 12604719 - SC-3_LTR 5748 0.0003 (1/2991) 0 * Os_TE_438528 Os_TE_438503 Chr3 12593972 12593971 + ORSiTERTOOT00296 5553 0.5822 (1743/2994) 0 * * Os_TE_438501 Chr3 12593334 12593335 + ORSiTERTOOT00296 5553 0.0040 (12/2990) 0 * Os_TE_438500 Os_TE_438500 Chr3 12593330 12593329 - SC-3_LTR 5748 0.0040 (12/2993) 0 * Os_TE_438501 Os_TE_438496 Chr3 12589067 12589068 + RIRE2_LTR 11306 0.0003 (1/2994) 0 * * Os_TE_438472 Chr3 12579375 12579376 + ORSiTERTOOT00226 792 0.0031 (9/2870) 0 * Os_TE_438471 Os_TE_438471 Chr3 12579371 12579370 - SZ-22_LTR 4403 0.0031 (9/2879) 0 * Os_TE_438472 Os_TE_438468 Chr3 12578887 12578888 + DS-RICE4N 715 0.0004 (1/2851) 0 * * Os_TE_438456 Chr3 12577441 12577442 + EnSpm-13_OS 11171 0.0003 (1/2991) 0 * Os_TE_438455 Os_TE_438455 Chr3 12577439 12577438 - EnSpm-13_OS 11171 0.0007 (2/2990) 0 * Os_TE_438456 Os_TE_438449 Chr3 12575209 12572936 - CACTA-Q 2268 0.3470 (1024/2951) 1 Intact Os_TE_438446 Os_TE_438446 Chr3 12572936 12575209 + CACTA-Q 2268 0.2877 (785/2729) -1 Intact Os_TE_438449 Os_TE_438429 Chr3 12566104 12566105 + RETRO1_LTR 8314 0.0003 (1/2888) 0 * * Os_TE_438410 Chr3 12559727 12559726 - YOUREN 286 0.0007 (2/2983) 0 * * Os_TE_438409 Chr3 12557412 12557413 - RIREX_LTR 8828 0.0003 (1/2993) 0 * Os_TE_438408 Os_TE_438408 Chr3 12557408 12557407 + RIREX_LTR 8828 0.0003 (1/2995) 0 * Os_TE_438409 Os_TE_438397 Chr3 12551394 12551395 + SC-3_LTR 5748 0.0017 (5/2995) 0 * Os_TE_438396 Os_TE_438396 Chr3 12551390 12551389 - SC-3_LTR 5748 0.0020 (6/2998) 0 * Os_TE_438397 Os_TE_438386 Chr3 12545508 12545509 + ORSiTERTOOT00226 792 0.0003 (1/2975) 0 * * Os_TE_438384 Chr3 12545385 12545386 + STOWAWAY47_OS 148 0.0030 (9/2976) 0 * * Os_TE_438366 Chr3 12534294 12534295 + STOWAWAY44_OS 240 0.0007 (2/2993) 0 * * Os_TE_438357 Chr3 12523992 12523993 + MPING 430 0.0043 (13/2995) 0 * Os_TE_438356 Os_TE_438356 Chr3 12523990 12523989 - MPING 430 0.0040 (12/2997) 0 * Os_TE_438357 Os_TE_438301 Chr3 12494547 12494546 + STOWAWAY51_OS 246 0.0023 (7/2995) 0 * Os_TE_438300 Os_TE_438300 Chr3 12494541 12494542 - STOWAWAY51_OS 246 0.0023 (7/2995) 0 * Os_TE_438301 Os_TE_438297 Chr3 12492296 12492295 - DNAUN1_OS 408 0.0024 (7/2973) 0 * * Os_TE_438295 Chr3 12492118 12492117 + STOWAWAY51_OS 246 0.0024 (7/2941) 0 * Os_TE_438294 Os_TE_438294 Chr3 12492112 12492113 + ORSgTEMT01601591 242 0.0020 (6/2939) 0 * Os_TE_438295 Os_TE_438270 Chr3 12486781 12486782 - COPIA2-LTR_OS 6433 0.0005 (1/2199) 0 * Os_TE_438269 Os_TE_438269 Chr3 12486777 12486776 + COPIA2-LTR_OS 6433 0.0003 (1/2883) 0 * Os_TE_438270 Os_TE_438268 Chr3 12486762 12486763 - ORSiTERT00200154 9386 0.5443 (1615/2967) 0 * Os_TE_438267 Os_TE_438267 Chr3 12486756 12486755 + TRUNCATOR 2918 0.5282 (1519/2876) 0 * Os_TE_438268 Os_TE_438243 Chr3 12482332 12482333 + OSTE14 885 0.0023 (7/2986) 0 * * Os_TE_438237 Chr3 12479043 12479044 - RETROFIT_LTR 4866 0.0003 (1/2972) 0 * Os_TE_438236 Os_TE_438236 Chr3 12479040 12479039 + ORSiTERTOOT00033 4884 0.0003 (1/2977) 0 * Os_TE_438237 Os_TE_438235 Chr3 12478538 12478539 - NDNA1TNA_OS 334 0.0020 (6/2995) 0 * * Os_TE_438204 Chr3 12461762 12461763 - SC-3_LTR 5748 0.0003 (1/2987) 0 * Os_TE_438203 Os_TE_438203 Chr3 12461758 12461757 + ORSiTERTOOT00296 5553 0.0003 (1/2988) 0 * Os_TE_438204 Os_TE_438194 Chr3 12456421 12456422 + ORSgTEMT01602181 239 0.0023 (7/2994) 0 * * Os_TE_438187 Chr3 12450229 12450230 - RIREX_LTR 8828 0.0003 (1/2998) 0 * Os_TE_438186 Os_TE_438186 Chr3 12450225 12450224 + RIREX_LTR 8828 0.0003 (1/2998) 0 * Os_TE_438187 Os_TE_438150 Chr3 12422687 12422686 + ORSgTETNOOT00908 242 0.0003 (1/2991) 0 * * Os_TE_438148 Chr3 12422454 12422453 - ORSgTEMT00901723 248 0.6717 (1997/2973) 0 * * Os_TE_438140 Chr3 12421029 12421028 + ID-3 289 0.6629 (1980/2987) 0 * * Os_TE_438118 Chr3 12418220 12418221 + ORSgTEMT00502094 140 0.6664 (1986/2980) 0 * * Os_TE_438108 Chr3 12409498 12409497 + TWIF 586 0.0023 (7/2996) 0 * * Os_TE_438107 Chr3 12409467 12409468 - TYPEM 227 0.0003 (1/2995) 0 * * Os_TE_438097 Chr3 12408829 12408830 - TNR2A 152 0.0023 (7/2996) 0 * * Os_TE_438066 Chr3 12399604 12399605 + ORSiTERTOOT00226 792 0.0010 (3/2971) 0 * Os_TE_438065 Os_TE_438065 Chr3 12399600 12399599 - SZ-22_LTR 4403 0.0010 (3/2979) 0 * Os_TE_438066 Os_TE_438063 Chr3 12399198 12399199 + TNR8-1 418 0.0023 (7/2985) 0 * * Os_TE_438057 Chr3 12397658 12397657 + DS-RICE4N 715 0.0024 (7/2969) 0 * * Os_TE_438051 Chr3 12396929 12396930 + ORSgTETNOOT00908 242 0.0003 (1/2989) 0 * * Os_TE_438050 Chr3 12396887 12396888 + COPI2_LTR 4733 0.0017 (5/2987) 0 * Os_TE_438049 Os_TE_438049 Chr3 12396883 12396882 - COPI2_LTR 4733 0.0017 (5/2987) 0 * Os_TE_438050 Os_TE_438044 Chr3 12393877 12393876 + ORSgTEMT01602083 237 0.0020 (6/2997) 0 * * Os_TE_438043 Chr3 12393626 12393625 + STOWAWAY51_OS 246 0.0007 (2/2997) 0 * Os_TE_438042 Os_TE_438042 Chr3 12393620 12393621 + ORSgTEMT01601591 242 0.0007 (2/2997) 0 * Os_TE_438043 Os_TE_438041 Chr3 12393527 12393526 + ORSgTEMT01601367 239 0.0020 (6/2992) 0 * Os_TE_438040 Os_TE_438040 Chr3 12393524 12393525 + ORSgTEMT01600650 234 0.0023 (7/2991) 0 * Os_TE_438041 Os_TE_438032 Chr3 12389910 12389909 + MuDR2_OS 6770 0.0003 (1/2967) 0 * * Os_TE_438029 Chr3 12388878 12388879 + TRUNCATOR2_LTR 2904 0.0024 (7/2923) 0 * Os_TE_438028 Os_TE_438028 Chr3 12388874 12388873 - TRUNCATOR2_LTR 2904 0.0027 (8/2930) 0 * Os_TE_438029 Os_TE_438012 Chr3 12380588 12380587 - STOWAWAY51_OS 246 0.0007 (2/2987) 0 * Os_TE_438011 Os_TE_438011 Chr3 12380582 12380583 + STOWAWAY51_OS 246 0.0007 (2/2990) 0 * Os_TE_438012 Os_TE_438004 Chr3 12373253 12373252 + ORSiTERTOOT00028 8600 0.0004 (1/2854) 0 * * Os_TE_437986 Chr3 12369412 12369413 + CASGRANDA 465 0.0027 (8/2994) 0 * * Os_TE_437985 Chr3 12368824 12368825 + MPING 430 0.0007 (2/2986) 0 * Os_TE_437984 Os_TE_437984 Chr3 12368822 12368821 - MPING 430 0.0007 (2/2981) 0 * Os_TE_437985 Os_TE_437959 Chr3 12348735 12348736 + DS-RICE3N 525 0.0003 (1/2984) 0 * * Os_TE_437937 Chr3 12334722 12334723 - FOCUS 257 0.0003 (1/2980) 0 * * Os_TE_437925 Chr3 12329245 12329246 + COPI2_LTR 4733 0.0003 (1/2955) 0 * Os_TE_437924 Os_TE_437924 Chr3 12329241 12329240 - COPI2_LTR 4733 0.0003 (1/2981) 0 * Os_TE_437925 Os_TE_437905 Chr3 12319261 12319262 - SC-8_LTR 4951 0.0007 (2/2990) 0 * Os_TE_437904 Os_TE_437904 Chr3 12319257 12319256 + SC-8_LTR 4951 0.0007 (2/2987) 0 * Os_TE_437905 Os_TE_437894 Chr3 12314606 12314605 - ORSgTEMT00300141 415 0.0017 (5/2887) 0 * * Os_TE_437893 Chr3 12314549 12314550 + ORSgTEMT01700610 148 0.0010 (3/2877) 0 * * Os_TE_437891 Chr3 12314543 12314544 - ORSgTEMT01702216 170 0.0010 (3/2875) 0 * * Os_TE_437887 Chr3 12312209 12312210 + INDITTO 263 0.0007 (2/2996) 0 * Os_TE_437886 Os_TE_437886 Chr3 12312207 12312206 - INDITTO 263 0.0010 (3/2995) 0 * Os_TE_437887 Os_TE_437880 Chr3 12307556 12307555 - ORSgTEMT02400246 177 0.0010 (3/2952) 0 * Os_TE_437879 Os_TE_437879 Chr3 12307552 12307553 - ORSgTEMT02400064 212 0.0003 (1/2952) 0 * Os_TE_437880 Os_TE_437878 Chr3 12306079 12306080 + FOCUS 257 0.0024 (7/2974) 0 * Os_TE_437877 Os_TE_437877 Chr3 12306077 12306076 - FOCUS 257 0.0024 (7/2977) 0 * Os_TE_437878 Os_TE_437858 Chr3 12294408 12294409 + SC-8_LTR 4951 0.0007 (2/2988) 0 * Os_TE_437857 Os_TE_437857 Chr3 12294404 12294403 - SC-8_LTR 4951 0.0007 (2/2989) 0 * Os_TE_437858 Os_TE_437847 Chr3 12283266 12283267 + STOWAWAY11_OS 292 0.0004 (1/2619) 0 * * Os_TE_437833 Chr3 12273967 12273968 + MPING 430 0.0003 (1/2995) 0 * Os_TE_437832 Os_TE_437832 Chr3 12273965 12273964 - MPING 430 0.0003 (1/2992) 0 * Os_TE_437833 Os_TE_437823 Chr3 12268548 12268547 - ORSgTEMT02400246 177 0.0027 (8/2996) 0 * Os_TE_437822 Os_TE_437822 Chr3 12268547 12268548 - TYPEM 227 0.0023 (7/2995) 0 * Os_TE_437823 Os_TE_437810 Chr3 12266520 12266519 + ORSgTETNOOT00908 242 0.1352 (400/2959) 0 * * Os_TE_437805 Chr3 12259870 12259869 + MIDWAY 985 0.0003 (1/2987) 0 * * Os_TE_437802 Chr3 12255259 12255260 - ORSgTETNOOT00053 263 0.0014 (4/2877) 0 * Os_TE_437801 Os_TE_437801 Chr3 12255257 12255256 - INDITTO 263 0.0014 (4/2892) 0 * Os_TE_437802 Os_TE_437775 Chr3 12247890 12247891 - F569 228 0.0003 (1/2964) 0 * Os_TE_437774 Os_TE_437774 Chr3 12247888 12247887 + F569 228 0.0003 (1/2973) 0 * Os_TE_437775 Os_TE_437773 Chr3 12247710 12247711 - TEMPINDAS 4259 0.0027 (8/2975) 0 * * Os_TE_437753 Chr3 12238528 12238527 + STOWAWAY51_OS 246 0.0442 (132/2985) 0 * * Os_TE_437749 Chr3 12237061 12237062 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_437748 Os_TE_437748 Chr3 12237057 12237056 + COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_437749 Os_TE_437728 Chr3 12229241 12229242 - HARB-N1_OS 2589 0.0003 (1/2995) 0 * * Os_TE_437715 Chr3 12223359 12223360 + MPING 430 0.0610 (182/2983) 0 * * Os_TE_437682 Chr3 12190414 12190415 + SZ-31LTR 1470 0.0058 (7/1212) 0 * * Os_TE_437680 Chr3 12190148 12190149 - RIRE2_LTR 11306 0.0008 (1/1180) 0 * * Os_TE_437664 Chr3 12184400 12184401 - NDNA1TNA_OS 334 0.0010 (2/1961) 0 * * Os_TE_437618 Chr3 12163557 12163558 + ORSiTERTOOT00226 792 0.0004 (1/2380) 0 * * Os_TE_437608 Chr3 12160752 12160751 + ORSgTEMT01601122 212 0.6170 (1827/2961) 0 * Os_TE_437607 Os_TE_437607 Chr3 12160751 12160752 - STOWAWAY21_OS 243 0.6235 (1855/2975) 0 * Os_TE_437608 Os_TE_437565 Chr3 12144771 12144772 - ORSiTERTOOT00332 5395 0.0013 (2/1511) 0 * * Os_TE_437559 Chr3 12143770 12143769 + STOWAWAY51_OS 246 0.0044 (13/2983) 0 * Os_TE_437558 Os_TE_437558 Chr3 12143764 12143765 - STOWAWAY51_OS 246 0.0044 (13/2986) 0 * Os_TE_437559 Os_TE_437545 Chr3 12141639 12141640 - COPIA2-LTR_OS 6433 0.0007 (2/2978) 0 * Os_TE_437544 Os_TE_437544 Chr3 12141635 12141634 + COPIA2-LTR_OS 6433 0.0003 (1/2969) 0 * Os_TE_437545 Os_TE_437531 Chr3 12139608 12139607 - NDNA1TNA_OS 334 0.0003 (1/2985) 0 * * Os_TE_437530 Chr3 12139440 12139441 - NDNA1TNA_OS 334 0.0003 (1/2991) 0 * * Os_TE_437529 Chr3 12139102 12139103 - RIREX_LTR 8828 0.0003 (1/2973) 0 * Os_TE_437528 Os_TE_437528 Chr3 12139098 12139097 + RIREX_LTR 8828 0.0003 (1/2964) 0 * Os_TE_437529 Os_TE_437523 Chr3 12136936 12136937 + ORSiTERTOOT00296 5553 0.0003 (1/2994) 0 * Os_TE_437522 Os_TE_437522 Chr3 12136932 12136931 - SC-3_LTR 5748 0.0003 (1/2989) 0 * Os_TE_437523 Os_TE_437505 Chr3 12124725 12124726 - COPI2_LTR 4733 0.0003 (1/2997) 0 * Os_TE_437504 Os_TE_437504 Chr3 12124721 12124720 + COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_437505 Os_TE_437503 Chr3 12123043 12123044 - COPIA2-LTR_OS 6433 0.0160 (48/2996) 0 * Os_TE_437502 Os_TE_437502 Chr3 12123039 12123038 + COPIA2-LTR_OS 6433 0.0153 (46/2997) 0 * Os_TE_437503 Os_TE_437499 Chr3 12119026 12119027 - MPING 430 0.0003 (1/2995) 0 * Os_TE_437498 Os_TE_437498 Chr3 12119024 12119023 + MPING 430 0.0003 (1/2995) 0 * Os_TE_437499 Os_TE_437458 Chr3 12100926 12100925 + STOWAWAY44_OS 240 0.0007 (2/2906) 0 * Os_TE_437457 Os_TE_437457 Chr3 12100917 12100918 - STOWAWAY51_OS 246 0.0007 (2/2956) 0 * Os_TE_437458 Os_TE_437451 Chr3 12099138 12099139 - MPING 430 0.0003 (1/2991) 0 * Os_TE_437450 Os_TE_437450 Chr3 12099136 12099135 + MPING 430 0.0003 (1/2989) 0 * Os_TE_437451 Os_TE_437446 Chr3 12096258 12096259 - CRM-LTR_OS 7749 0.0020 (6/2981) 0 * * Os_TE_437405 Chr3 12068384 12068383 - MPING 430 0.0087 (26/2998) 0 * * Os_TE_437392 Chr3 12065806 12065807 + ORSgTETNOOT01886 135 0.0029 (7/2379) 0 * Os_TE_437391 Os_TE_437391 Chr3 12065804 12065803 + ORSgTETNOOT01930 140 0.0025 (7/2756) 0 * Os_TE_437392 Os_TE_437390 Chr3 12065794 12065795 + STOWAWAY51_OS 246 0.1275 (358/2808) 0 * * Os_TE_437379 Chr3 12064547 12064548 + ORSiTERTOOT00074 4935 0.0004 (1/2793) 0 * Os_TE_437378 Os_TE_437378 Chr3 12064543 12064542 - ORSiTERTOOT00074 4935 0.0004 (1/2775) 0 * Os_TE_437379 Os_TE_437367 Chr3 12063483 12063484 + MUDRN5_OS 374 0.0068 (20/2934) 0 * * Os_TE_437341 Chr3 12052372 12052373 - SZ-22_LTR 4403 0.0007 (2/2981) 0 * Os_TE_437340 Os_TE_437340 Chr3 12052368 12052367 + ORSiTERTOOT00034 791 0.0007 (2/2982) 0 * Os_TE_437341 Os_TE_437330 Chr3 12046385 12046075 - ORSgTEMT00600471 347 0.4038 (1196/2962) 1 Intact * Os_TE_437316 Chr3 12042120 12042121 - ORSiTERTOOT00441 4741 0.0013 (4/2979) 0 * Os_TE_437315 Os_TE_437315 Chr3 12042116 12042115 + ORSiTERTOOT00441 4741 0.0017 (5/2980) 0 * Os_TE_437316 Os_TE_437293 Chr3 12035938 12035939 - MPING 430 0.0010 (3/2973) 0 * Os_TE_437292 Os_TE_437292 Chr3 12035936 12035935 - HARB-1_OS 5166 0.0007 (2/2978) 0 * Os_TE_437293 Os_TE_437255 Chr3 12027772 12027773 - SZ-46LTR 3360 0.0003 (1/2971) 0 * * Os_TE_437254 Chr3 12027239 12027238 - ORSiTETNOOT00134 607 0.0004 (1/2772) 0 * * Os_TE_437235 Chr3 12011450 12011451 - SC-8_LTR 4951 0.0003 (1/2989) 0 * Os_TE_437234 Os_TE_437234 Chr3 12011446 12011445 + SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_437235 Os_TE_437217 Chr3 11998190 11998191 + SC-8_LTR 4951 0.0003 (1/2986) 0 * Os_TE_437216 Os_TE_437216 Chr3 11998186 11998185 - SC-8_LTR 4951 0.0003 (1/2985) 0 * Os_TE_437217 Os_TE_437209 Chr3 11990207 11990206 - TNR11 811 0.0010 (3/2967) 0 * Os_TE_437208 Os_TE_437208 Chr3 11990203 11990204 + STOWAWAY51_OS 246 0.0010 (3/2976) 0 * Os_TE_437209 Os_TE_437207 Chr3 11990019 11989604 + ORSgTEMT00300122 416 0.3987 (1183/2967) 1 Intact Os_TE_437204 Os_TE_437204 Chr3 11989598 11990015 + ORSgTEMT00300069 394 0.3703 (1052/2841) 1 Intact Os_TE_437207 Os_TE_437196 Chr3 11984534 11984533 + ORSiTERTOOT00226 792 0.0003 (1/2996) 0 * * Os_TE_437186 Chr3 11981811 11981812 - ORSiTERTOOT00074 4935 0.0014 (4/2946) 0 * Os_TE_437185 Os_TE_437185 Chr3 11981807 11981806 + ORSiTERTOOT00074 4935 0.0014 (4/2954) 0 * Os_TE_437186 Os_TE_437183 Chr3 11980663 11980664 - MPING 430 0.0020 (6/2996) 0 * Os_TE_437182 Os_TE_437182 Chr3 11980661 11980660 + MPING 430 0.0023 (7/2996) 0 * Os_TE_437183 Os_TE_437171 Chr3 11977339 11977340 + ORSiTERTOOT00226 792 0.0003 (1/2981) 0 * * Os_TE_437146 Chr3 11964045 11964044 + RETROSAT4_LTR 13504 0.5984 (1755/2933) 0 * * Os_TE_437135 Chr3 11961634 11961635 + ORSgTETNOOT01834 251 0.0003 (1/2987) 0 * * Os_TE_437121 Chr3 11952439 11952440 + COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_437120 Os_TE_437120 Chr3 11952435 11952434 - COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_437121 Os_TE_437090 Chr3 11941997 11941998 - MPING 430 0.0020 (6/2992) 0 * Os_TE_437089 Os_TE_437089 Chr3 11941995 11941994 + MPING 430 0.0020 (6/2990) 0 * Os_TE_437090 Os_TE_437085 Chr3 11934883 11934882 + STOWAWAY51_OS 246 0.0007 (2/2994) 0 * Os_TE_437084 Os_TE_437084 Chr3 11934877 11934878 - STOWAWAY51_OS 246 0.0007 (2/2993) 0 * Os_TE_437085 Os_TE_437004 Chr3 11904903 11904904 + ORSiTERTOOT00296 5553 0.0003 (1/2987) 0 * Os_TE_437003 Os_TE_437003 Chr3 11904899 11904898 - SC-3_LTR 5748 0.0003 (1/2983) 0 * Os_TE_437004 Os_TE_436993 Chr3 11900194 11900195 - COPI2_LTR 4733 0.0003 (1/2983) 0 * * Os_TE_436987 Chr3 11895966 11895967 + ORSgTETNOOT00032 218 0.0003 (1/2995) 0 * * Os_TE_436984 Chr3 11892353 11892354 - AMYLTP 383 0.0013 (4/2995) 0 * Os_TE_436983 Os_TE_436983 Chr3 11892344 11892343 + AMYLTP 383 0.0013 (4/2995) 0 * Os_TE_436984 Os_TE_436981 Chr3 11891383 11891384 - TYPEM 227 0.0699 (209/2990) 0 * Os_TE_436980 Os_TE_436980 Chr3 11891382 11891381 - ORSgTEMT02400179 221 0.0685 (205/2993) 0 * Os_TE_436981 Os_TE_436962 Chr3 11881209 11881210 - COPIA2-LTR_OS 6433 0.0103 (31/2996) 0 * * Os_TE_436928 Chr3 11875976 11875977 + OSTONOR1_LTR 6440 0.0005 (1/2207) 0 * * Os_TE_436927 Chr3 11873565 11873566 - RIRE3A_LTR 10580 0.0038 (5/1305) 0 * * Os_TE_436915 Chr3 11870591 11876672 - RN107_LTR 6299 0.4307 (1290/2995) 1 Intact * Os_TE_436914 Chr3 11869650 11869649 + TYPEU4 402 0.5723 (1683/2941) 0 * * Os_TE_436913 Chr3 11869384 11868425 + CACTA-I 1124 0.4369 (1289/2950) 1 Intact Os_TE_436911 Os_TE_436911 Chr3 11868425 11869384 - CACTA-I 1124 0.4263 (1266/2970) 1 Intact Os_TE_436913 Os_TE_436902 Chr3 11866579 11866578 + MERMITEB 1610 0.5751 (1693/2944) 0 * * Os_TE_436886 Chr3 11861709 11861710 - SZ-35LTR 3853 0.0003 (1/2938) 0 * * Os_TE_436882 Chr3 11860547 11860548 - ORSgTETNOOT02417 265 0.0003 (1/2971) 0 * * Os_TE_436876 Chr3 11857570 11857569 - STOWAWAY51_OS 246 0.0003 (1/2983) 0 * Os_TE_436875 Os_TE_436875 Chr3 11857564 11857565 + STOWAWAY51_OS 246 0.0003 (1/2987) 0 * Os_TE_436876 Os_TE_436869 Chr3 11856777 11856778 - MPING 430 0.0007 (2/2983) 0 * Os_TE_436868 Os_TE_436868 Chr3 11856775 11856774 + MPING 430 0.0007 (2/2980) 0 * Os_TE_436869 Os_TE_436847 Chr3 11849745 11849746 - HARB-1_OS 5166 0.0014 (4/2947) 0 * Os_TE_436846 Os_TE_436846 Chr3 11849743 11849742 + HARB-1_OS 5166 0.0014 (4/2940) 0 * Os_TE_436847 Os_TE_436845 Chr3 11849599 11849600 + MPING 430 0.0003 (1/2979) 0 * * Os_TE_436810 Chr3 11825091 11825092 - OSTONOR1_LTR 6440 0.0003 (1/2977) 0 * Os_TE_436809 Os_TE_436809 Chr3 11825087 11825086 + OSTONOR1_LTR 6440 0.0003 (1/2982) 0 * Os_TE_436810 Os_TE_436806 Chr3 11822716 11822717 + INDITTO 263 0.6718 (2008/2989) 0 * * Os_TE_436801 Chr3 11820252 11820251 - NDNA1TNA_OS 334 0.0003 (1/2992) 0 * Os_TE_436800 Os_TE_436800 Chr3 11820249 11820250 + NDNA1TNA_OS 334 0.0003 (1/2990) 0 * Os_TE_436801 Os_TE_436785 Chr3 11815296 11815297 + ORSgTETNOOT00908 242 0.0003 (1/2995) 0 * * Os_TE_436754 Chr3 11795598 11784816 - ORSgTETN00200001 10994 0.3322 (993/2989) 1 Intact Os_TE_436749 Os_TE_436749 Chr3 11784752 11795598 + SPMLIKE 10989 0.3282 (978/2980) 1 Intact Os_TE_436754 Os_TE_436740 Chr3 11780126 11780127 - HARB-1_OS 5166 0.0003 (1/2997) 0 * Os_TE_436739 Os_TE_436739 Chr3 11780124 11780123 + HARB-1_OS 5166 0.0003 (1/2997) 0 * Os_TE_436740 Os_TE_436738 Chr3 11780098 11780099 + HARB-1_OS 5166 0.0003 (1/2987) 0 * Os_TE_436737 Os_TE_436737 Chr3 11780096 11780095 - HARB-1_OS 5166 0.0003 (1/2991) 0 * Os_TE_436738 Os_TE_436731 Chr3 11766483 11766484 + OSTE33 1012 0.5373 (1497/2786) 0 * Os_TE_436730 Os_TE_436730 Chr3 11766475 11766474 - OSTE33 1012 0.5775 (1721/2980) 0 * Os_TE_436731 Os_TE_436700 Chr3 11760688 11760687 + ORSgTEMT01601591 242 0.0010 (3/2954) 0 * * Os_TE_436693 Chr3 11757425 11757424 - TRUNCATOR 2918 0.0010 (3/2990) 0 * Os_TE_436692 Os_TE_436692 Chr3 11757424 11757425 + TRUNCATOR 2918 0.0013 (4/2986) 0 * Os_TE_436693 Os_TE_436676 Chr3 11750473 11750472 - ORSgTEMT02400179 221 0.8555 (2557/2989) 0 * Os_TE_436675 Os_TE_436675 Chr3 11750470 11750471 + ORSgTEMT02400041 225 0.8569 (2568/2997) 0 * Os_TE_436676 Os_TE_436666 Chr3 11741089 11741090 + RETRO1_LTR 8314 0.0007 (2/2918) 0 * * Os_TE_436640 Chr3 11733926 11733927 + COPI2_LTR 4733 0.0003 (1/2968) 0 * Os_TE_436639 Os_TE_436639 Chr3 11733922 11733921 - COPI2_LTR 4733 0.0003 (1/2961) 0 * Os_TE_436640 Os_TE_436626 Chr3 11731195 11731196 + COPI2_LTR 4733 0.0005 (1/2043) 0 * * Os_TE_436619 Chr3 11725003 11725004 - MPING 430 0.0013 (4/2972) 0 * Os_TE_436618 Os_TE_436618 Chr3 11725001 11725000 + MPING 430 0.0010 (3/2977) 0 * Os_TE_436619 Os_TE_436601 Chr3 11723178 11723179 + MPING 430 0.0003 (1/2987) 0 * Os_TE_436600 Os_TE_436600 Chr3 11723176 11723175 - MPING 430 0.0003 (1/2988) 0 * Os_TE_436601 Os_TE_436563 Chr3 11698363 11698362 + OSTE33 1012 0.3530 (884/2504) 0 * * Os_TE_436543 Chr3 11691981 11691982 + RETRO1_LTR 8314 0.0003 (1/2953) 0 * * Os_TE_436510 Chr3 11686436 11686435 + STOWAWAY51_OS 246 0.0007 (2/2965) 0 * Os_TE_436509 Os_TE_436509 Chr3 11686430 11686431 + ORSgTEMT01601591 242 0.0007 (2/2970) 0 * Os_TE_436510 Os_TE_436504 Chr3 11684796 11684797 - TELIA 141 0.4891 (1367/2795) 0 * Os_TE_436503 Os_TE_436503 Chr3 11684791 11684790 + TELIA 141 0.5136 (1495/2911) 0 * Os_TE_436504 Os_TE_436482 Chr3 11680690 11680691 + STOWAWAY51_OS 246 0.0003 (1/2990) 0 * * Os_TE_436462 Chr3 11666546 11666547 - RETROSAT2LTR 12796 0.7771 (2329/2997) 0 * Os_TE_436461 Os_TE_436461 Chr3 11666544 11666543 + RETROSAT2LTR 12796 0.7629 (2201/2885) 0 * Os_TE_436462 Os_TE_436414 Chr3 11644714 11644715 + COPIA2-LTR_OS 6433 0.0017 (5/2998) 0 * Os_TE_436413 Os_TE_436413 Chr3 11644710 11644709 - COPIA2-LTR_OS 6433 0.0017 (5/2998) 0 * Os_TE_436414 Os_TE_436412 Chr3 11644168 11644169 - RETRO2_LTR 12874 0.0010 (3/2997) 0 * Os_TE_436411 Os_TE_436411 Chr3 11644164 11644163 + RETRO2_LTR 12874 0.0007 (2/2998) 0 * Os_TE_436412 Os_TE_436404 Chr3 11642116 11642117 + MPING 430 0.0003 (1/2994) 0 * Os_TE_436403 Os_TE_436403 Chr3 11642114 11642113 - MPING 430 0.0003 (1/2993) 0 * Os_TE_436404 Os_TE_436370 Chr3 11617785 11617786 - INDITTO 263 0.0007 (2/2988) 0 * Os_TE_436369 Os_TE_436369 Chr3 11617783 11617782 + INDITTO 263 0.0007 (2/2982) 0 * Os_TE_436370 Os_TE_436368 Chr3 11616165 11616164 + ORSgTEMT01601591 242 0.0003 (1/2988) 0 * Os_TE_436367 Os_TE_436367 Chr3 11616159 11616160 + STOWAWAY51_OS 246 0.0003 (1/2993) 0 * Os_TE_436368 Os_TE_436366 Chr3 11613053 11613054 - MPING 430 0.0622 (186/2991) 0 * Os_TE_436365 Os_TE_436365 Chr3 11613051 11613050 + MPING 430 0.0634 (190/2998) 0 * Os_TE_436366 Os_TE_436364 Chr3 11612990 11612991 + OSTE33 1012 0.0007 (2/2983) 0 * Os_TE_436363 Os_TE_436363 Chr3 11612981 11612980 + OSTE33 1012 0.0010 (3/2982) 0 * Os_TE_436364 Os_TE_436331 Chr3 11594207 11594208 + STOWAWAY51_OS 246 0.0003 (1/2986) 0 * * Os_TE_436315 Chr3 11585065 11585064 + ORSgTEMT00901844 250 0.0020 (6/2994) 0 * Os_TE_436314 Os_TE_436314 Chr3 11585061 11585062 - ORSgTEMT00900099 250 0.0023 (7/2995) 0 * Os_TE_436315 Os_TE_436309 Chr3 11583000 11583001 - INDITTO 263 0.0815 (244/2993) 0 * Os_TE_436308 Os_TE_436308 Chr3 11582998 11582997 + INDITTO 263 0.0816 (244/2992) 0 * Os_TE_436309 Os_TE_436301 Chr3 11580579 11580580 + ORSgTEMT00500201 140 0.7822 (2334/2984) 0 * * Os_TE_436267 Chr3 11573952 11573951 - STOWAWAY21_OS 243 0.8631 (2332/2702) 0 * * Os_TE_436254 Chr3 11571262 11571263 - ORSiTERTOOT00361 5627 0.8616 (2583/2998) 0 * Os_TE_436253 Os_TE_436253 Chr3 11571260 11571259 + ORSiTERTOOT00361 5627 0.8595 (2564/2983) 0 * Os_TE_436254 Os_TE_436249 Chr3 11570217 11570218 + MDR2 6967 0.0007 (2/2993) 0 * Os_TE_436248 Os_TE_436248 Chr3 11570207 11570206 + MDR2 6967 0.0010 (3/2991) 0 * Os_TE_436249 Os_TE_436244 Chr3 11567462 11567461 - ORSgTEMT00501147 121 0.0003 (1/2983) 0 * * Os_TE_436126 Chr3 11525315 11525314 + RETROSAT2LTRA 3112 0.4916 (1427/2903) 0 * * Os_TE_436118 Chr3 11520931 11520932 - COPI2_LTR 4733 0.0003 (1/2997) 0 * Os_TE_436117 Os_TE_436117 Chr3 11520927 11520926 + COPI2_LTR 4733 0.0003 (1/2962) 0 * Os_TE_436118 Os_TE_436115 Chr3 11520602 11520603 + OLO24 345 0.0003 (1/2982) 0 * Os_TE_436114 Os_TE_436114 Chr3 11520600 11520599 - OLO24 345 0.0003 (1/2986) 0 * Os_TE_436115 Os_TE_436104 Chr3 11514204 11514205 + INDITTO 263 0.0004 (1/2559) 0 * * Os_TE_436102 Chr3 11514174 11513912 - INDITTO 263 0.1376 (411/2987) 1 Intact Os_TE_436100 Os_TE_436100 Chr3 11513912 11514174 + INDITTO 263 0.1369 (409/2988) 1 Intact Os_TE_436102 Os_TE_436095 Chr3 11513425 11513426 - INDITTO 263 0.0003 (1/2920) 0 * Os_TE_436094 Os_TE_436094 Chr3 11513423 11513422 + INDITTO 263 0.0003 (1/2912) 0 * Os_TE_436095 Os_TE_436093 Chr3 11513410 11513411 + INDITTO 263 0.0010 (3/2912) 0 * Os_TE_436092 Os_TE_436092 Chr3 11513408 11513407 - INDITTO 263 0.0010 (3/2930) 0 * Os_TE_436093 Os_TE_436089 Chr3 11512707 11512708 - RIREX_LTR 8828 0.0003 (1/2997) 0 * Os_TE_436088 Os_TE_436088 Chr3 11512703 11512702 + RIREX_LTR 8828 0.0003 (1/2995) 0 * Os_TE_436089 Os_TE_436058 Chr3 11501149 11501150 + SZ-67LTR 1540 0.0024 (7/2953) 0 * * Os_TE_436048 Chr3 11498946 11498947 + SINE1OS 127 0.8484 (2351/2771) 0 * * Os_TE_436033 Chr3 11493905 11493904 - STOWAWAY51_OS 246 0.0087 (26/2991) 0 * Os_TE_436032 Os_TE_436032 Chr3 11493902 11493903 + ORSgTEMT01601591 242 0.0087 (26/2988) 0 * Os_TE_436033 Os_TE_435991 Chr3 11482223 11482224 - NDNA2TNA_OS 346 0.0024 (7/2957) 0 * Os_TE_435990 Os_TE_435990 Chr3 11482221 11482220 + NDNA2TNA_OS 346 0.0024 (7/2948) 0 * Os_TE_435991 Os_TE_435980 Chr3 11467520 11467521 - LINE-4_OS 3662 0.0010 (3/2971) 0 * * Os_TE_435977 Chr3 11467309 11467310 - NDNA1TNA_OS 334 0.0007 (2/2966) 0 * Os_TE_435976 Os_TE_435976 Chr3 11467307 11467306 + NDNA1TNA_OS 334 0.0007 (2/2975) 0 * Os_TE_435977 Os_TE_435947 Chr3 11462280 11462281 - RETROSAT2LTRA 3112 0.0051 (15/2926) 0 * * Os_TE_435922 Chr3 11453592 11453593 + RPO_OS 1983 0.7484 (1142/1526) 0.22 * * Os_TE_435890 Chr3 11443658 11443659 + RETROSAT4_LTR 13504 0.8534 (2386/2796) 0 * Os_TE_435889 Os_TE_435889 Chr3 11443656 11443655 - RETROSAT4_LTR 13504 0.8647 (2588/2993) 0 * Os_TE_435890 Os_TE_435876 Chr3 11438871 11438525 - NDNA2TNA_OS 346 0.5025 (1496/2977) 1 Intact Os_TE_435872 Os_TE_435872 Chr3 11438525 11438871 + NDNA2TNA_OS 346 0.5024 (1486/2958) 1 Intact Os_TE_435876 Os_TE_435790 Chr3 11393987 11393986 + DS-RICE4N 715 0.0023 (7/2998) 0 * * Os_TE_435759 Chr3 11377190 11377189 + ORSgTETNOOT00908 242 0.0003 (1/2988) 0 * * Os_TE_435727 Chr3 11362301 11362300 - RETROSAT2LTR 12796 0.0339 (101/2980) 0 * * Os_TE_435704 Chr3 11345714 11345715 + RIREX_LTR 8828 0.0003 (1/2995) 0 * Os_TE_435703 Os_TE_435703 Chr3 11345710 11345709 - RIREX_LTR 8828 0.0003 (1/2998) 0 * Os_TE_435704 Os_TE_435680 Chr3 11341434 11341433 + SINE1OS 127 0.5061 (1499/2962) 0 * * Os_TE_435674 Chr3 11336274 11336275 + COPI2_LTR 4733 0.0016 (3/1924) 0 * Os_TE_435673 Os_TE_435673 Chr3 11336270 11336269 - COPI2_LTR 4733 0.0005 (1/2120) 0 * Os_TE_435674 Os_TE_435672 Chr3 11336051 11336052 + ORSgTETN00200005 1121 0.0049 (4/813) 0 * * Os_TE_435668 Chr3 11334483 11334484 - OSMU5 4881 0.0003 (1/2980) 0 * Os_TE_435667 Os_TE_435667 Chr3 11334473 11334472 - OSMU5 4881 0.0003 (1/2979) 0 * Os_TE_435668 Os_TE_435663 Chr3 11331461 11331462 + COPI2_LTR 4733 0.0003 (1/2971) 0 * Os_TE_435662 Os_TE_435662 Chr3 11331457 11331456 - COPI2_LTR 4733 0.0003 (1/2967) 0 * Os_TE_435663 Os_TE_435661 Chr3 11331345 11331094 - ORSgTETNOOT02210 237 0.1442 (430/2983) 1 Intact * Os_TE_435565 Chr3 11287932 11287931 + TWIFB1 3737 0.0010 (3/2982) 0 * * Os_TE_435523 Chr3 11278769 11278770 + MPING 430 0.0007 (2/2989) 0 * Os_TE_435522 Os_TE_435522 Chr3 11278767 11278766 - MPING 430 0.0007 (2/2986) 0 * Os_TE_435523 Os_TE_435509 Chr3 11274559 11274560 - MPING 430 0.0003 (1/2973) 0 * Os_TE_435508 Os_TE_435508 Chr3 11274557 11274556 + MPING 430 0.0003 (1/2977) 0 * Os_TE_435509 Os_TE_435507 Chr3 11271184 11271183 - ORSgTEMT01701176 148 0.0010 (2/1939) 0 * * Os_TE_435494 Chr3 11264609 11264610 - COPIA2-LTR_OS 6433 0.0003 (1/2979) 0 * Os_TE_435493 Os_TE_435493 Chr3 11264605 11264604 + COPIA2-LTR_OS 6433 0.0003 (1/2977) 0 * Os_TE_435494 Os_TE_435422 Chr3 11247937 11247938 + MPING 430 0.0003 (1/2987) 0 * Os_TE_435421 Os_TE_435421 Chr3 11247935 11247934 - MPING 430 0.0003 (1/2985) 0 * Os_TE_435422 Os_TE_435344 Chr3 11215020 11215021 + HARB-1_OS 5166 0.0817 (244/2987) 0 * Os_TE_435343 Os_TE_435343 Chr3 11215018 11215017 - HARB-1_OS 5166 0.0810 (242/2988) 0 * Os_TE_435344 Os_TE_435331 Chr3 11208907 11208906 + CLOUD 734 0.0067 (20/2986) 0 * * Os_TE_435302 Chr3 11194976 11194975 + STOWAWAY51_OS 246 0.0003 (1/2985) 0 * Os_TE_435301 Os_TE_435301 Chr3 11194970 11194971 + ORSgTEMT01601591 242 0.0003 (1/2988) 0 * Os_TE_435302 Os_TE_435291 Chr3 11188826 11188827 + MPING 430 0.0003 (1/2978) 0 * Os_TE_435290 Os_TE_435290 Chr3 11188824 11188823 - MPING 430 0.0003 (1/2983) 0 * Os_TE_435291 Os_TE_435233 Chr3 11162916 11161908 - RETRO2_LTR 12874 0.1723 (506/2936) 1 Solo_LTR Os_TE_435232 Os_TE_435232 Chr3 11161908 11162916 + RETRO2_LTR 12874 0.1503 (432/2875) 1 Solo_LTR Os_TE_435233 Os_TE_435230 Chr3 11161150 11161151 + ORSgTEMT00700017 386 0.0003 (1/2995) 0 * * Os_TE_435217 Chr3 11149740 11149739 - SZ-48LTR 3632 0.4774 (1391/2914) 0 * * Os_TE_435183 Chr3 11142420 11142419 + ORSgTERT00201346 4268 0.0003 (1/2999) 0 * * Os_TE_435172 Chr3 11137622 11137621 + MuDR2_OS 6770 0.0013 (4/2993) 0 * * Os_TE_435170 Chr3 11136781 11136780 + ORSgTETNOOT01998 254 0.2772 (830/2994) 0 * * Os_TE_435169 Chr3 11135522 11135523 + TWIFBIG 3567 0.0053 (16/2994) 0 * Os_TE_435168 Os_TE_435168 Chr3 11135515 11135514 - ORSiTETNOOT00216 3569 0.0053 (16/2993) 0 * Os_TE_435169 Os_TE_435141 Chr3 11129986 11129987 - ORSgTEMT00501568 147 0.0003 (1/2995) 0 * * Os_TE_435138 Chr3 11128818 11128819 - HARB-1_OS 5166 0.0010 (3/2999) 0 * Os_TE_435137 Os_TE_435137 Chr3 11128816 11128815 + HARB-1_OS 5166 0.0010 (3/2999) 0 * Os_TE_435138 Os_TE_435125 Chr3 11112878 11112879 + SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_435124 Os_TE_435124 Chr3 11112874 11112873 - SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_435125 Os_TE_435106 Chr3 11102324 11102325 + MPING 430 0.0010 (3/2984) 0 * Os_TE_435105 Os_TE_435105 Chr3 11102322 11102321 - MPING 430 0.0010 (3/2978) 0 * Os_TE_435106 Os_TE_435095 Chr3 11096361 11096362 + AMYLTP 383 0.2768 (825/2980) 0 * Os_TE_435094 Os_TE_435094 Chr3 11096354 11096353 - AMYLTP 383 0.2704 (802/2966) 0 * Os_TE_435095 Os_TE_435091 Chr3 11095958 11095706 + ORSgTEMT00900210 205 0.5271 (1575/2988) 1 Intact * Os_TE_435048 Chr3 11079694 11079695 - SC-8_LTR 4951 0.0007 (2/2995) 0 * Os_TE_435047 Os_TE_435047 Chr3 11079690 11079689 + SC-8_LTR 4951 0.0007 (2/2995) 0 * Os_TE_435048 Os_TE_435046 Chr3 11077029 11077030 - ORSgTEMT00700002 381 0.0003 (1/2979) 0 * * Os_TE_435034 Chr3 11073408 11073409 + ORSiTERTOOT00381 4988 0.0020 (6/2964) 0 * Os_TE_435033 Os_TE_435033 Chr3 11073404 11073403 - SC-8_LTR 4951 0.0020 (6/2968) 0 * Os_TE_435034 Os_TE_434994 Chr3 11059729 11059728 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * * Os_TE_434953 Chr3 11043318 11042904 + ORSgTEMT00300122 416 0.1689 (497/2943) 1 Intact * Os_TE_434931 Chr3 11033858 11033859 + COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_434930 Os_TE_434930 Chr3 11033854 11033853 - COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_434931 Os_TE_434929 Chr3 11033511 11033512 + RIREX_LTR 8828 0.0013 (4/2969) 0 * Os_TE_434928 Os_TE_434928 Chr3 11033507 11033506 - RIREX_LTR 8828 0.0013 (4/2976) 0 * Os_TE_434929 Os_TE_434915 Chr3 11029688 11029687 - DITAILA 257 0.0023 (7/2996) 0 * * Os_TE_434892 Chr3 11018092 11018093 + SZ-67LTR 1540 0.0010 (3/2992) 0 * * Os_TE_434869 Chr3 11012724 11012723 - RETRO1_LTR 8314 0.0010 (3/2967) 0 * * Os_TE_434820 Chr3 10980035 10980036 + HARB-1_OS 5166 0.0007 (2/2993) 0 * Os_TE_434819 Os_TE_434819 Chr3 10980033 10980032 - HARB-1_OS 5166 0.0003 (1/2994) 0 * Os_TE_434820 Os_TE_434814 Chr3 10978035 10978036 - SC-3_LTR 5748 0.0030 (9/2992) 0 * Os_TE_434813 Os_TE_434813 Chr3 10978031 10978030 + ORSiTERTOOT00296 5553 0.0030 (9/2992) 0 * Os_TE_434814 Os_TE_434803 Chr3 10968160 10968161 - SC-3_LTR 5748 0.0003 (1/2997) 0 * Os_TE_434802 Os_TE_434802 Chr3 10968156 10968155 + ORSiTERTOOT00296 5553 0.0003 (1/2994) 0 * Os_TE_434803 Os_TE_434757 Chr3 10948927 10948928 - INDITTO 263 0.4913 (1462/2976) 0 * * Os_TE_434730 Chr3 10931736 10931737 - ORSgTERT00201216 11284 0.0034 (10/2982) 0 * Os_TE_434729 Os_TE_434729 Chr3 10931732 10931731 - RIRE2_LTR 11306 0.0030 (9/2985) 0 * Os_TE_434730 Os_TE_434719 Chr3 10928615 10928614 + RETRO2_LTR 12874 0.0017 (5/2888) 0 * * Os_TE_434669 Chr3 10909802 10909803 - NDNA1TNA_OS 334 0.0013 (4/2988) 0 * * Os_TE_434656 Chr3 10907866 10907867 + RIREX_LTR 8828 0.0013 (4/2986) 0 * Os_TE_434655 Os_TE_434655 Chr3 10907862 10907861 - RIREX_LTR 8828 0.0013 (4/2994) 0 * Os_TE_434656 Os_TE_434653 Chr3 10907692 10907693 - OSTONOR1_LTR 6440 0.0013 (4/2989) 0 * Os_TE_434652 Os_TE_434652 Chr3 10907688 10907687 + OSTONOR1_LTR 6440 0.0013 (4/2990) 0 * Os_TE_434653 Os_TE_434642 Chr3 10895425 10895426 + YOUREN 286 0.8364 (2403/2873) 0 * * Os_TE_434620 Chr3 10886324 10886325 - ORSgTEMT00100607 336 0.1860 (554/2978) 0 * Os_TE_434619 Os_TE_434619 Chr3 10886323 10886322 - NDNA1TNA_OS 334 0.1837 (545/2967) 0 * Os_TE_434620 Os_TE_434562 Chr3 10860959 10860960 + COPIA2-LTR_OS 6433 0.0003 (1/2897) 0 * Os_TE_434561 Os_TE_434561 Chr3 10860955 10860954 - COPIA2-LTR_OS 6433 0.0003 (1/2883) 0 * Os_TE_434562 Os_TE_434546 Chr3 10858884 10858883 - SZ-67LTR 1540 0.0780 (222/2845) 0 * * Os_TE_434544 Chr3 10855677 10855678 + ORSgTETN00100092 209 0.0003 (1/2983) 0 * * Os_TE_434523 Chr3 10837578 10837579 + OSTE33 1012 0.0731 (216/2954) 0 * Os_TE_434522 Os_TE_434522 Chr3 10837569 10837568 + OSTE33 1012 0.0747 (221/2958) 0 * Os_TE_434523 Os_TE_434494 Chr3 10829547 10829548 - MPING 430 0.0005 (1/2013) 0 * Os_TE_434493 Os_TE_434493 Chr3 10829545 10829544 + MPING 430 0.0003 (1/2966) 0 * Os_TE_434494 Os_TE_434480 Chr3 10827719 10827720 - OSTE24 683 0.0044 (13/2958) 0 * Os_TE_434479 Os_TE_434479 Chr3 10827708 10827707 - OSTE24 683 0.0045 (13/2902) 0 * Os_TE_434480 Os_TE_434466 Chr3 10821223 10821224 + RIREX_LTR 8828 0.0014 (4/2880) 0 * Os_TE_434465 Os_TE_434465 Chr3 10821219 10821218 - RIREX_LTR 8828 0.0010 (3/2912) 0 * Os_TE_434466 Os_TE_434463 Chr3 10820739 10820740 - MIDWAY 985 0.0003 (1/2981) 0 * * Os_TE_434456 Chr3 10818075 10818076 - YOUREN 286 0.0010 (3/2991) 0 * * Os_TE_434454 Chr3 10815456 10815455 - CACTA-Q 2268 0.0011 (3/2697) 0 * * Os_TE_434452 Chr3 10813898 10813897 - NDNA1TNA_OS 334 0.0030 (9/2987) 0 * Os_TE_434451 Os_TE_434451 Chr3 10813886 10813887 + NDNA1TNA_OS 334 0.0030 (9/2991) 0 * Os_TE_434452 Os_TE_434440 Chr3 10809716 10809717 + ORSgTETNOOT00908 242 0.0027 (8/2987) 0 * * Os_TE_434430 Chr3 10807472 10807471 + TRUNCATOR 2918 0.1741 (494/2837) 0 * Os_TE_434429 Os_TE_434429 Chr3 10807471 10807472 - TRUNCATOR 2918 0.1620 (450/2778) 0 * Os_TE_434430 Os_TE_434422 Chr3 10806869 10806868 + STOWAWAY21_OS 243 0.8244 (2347/2847) 0 * Os_TE_434421 Os_TE_434421 Chr3 10806868 10806869 + ORSgTEMT01601122 212 0.8321 (2459/2955) 0 * Os_TE_434422 Os_TE_434402 Chr3 10799617 10799618 + RIREX_LTR 8828 0.0003 (1/2993) 0 * Os_TE_434401 Os_TE_434401 Chr3 10799613 10799612 - RIREX_LTR 8828 0.0003 (1/2993) 0 * Os_TE_434402 Os_TE_434361 Chr3 10786071 10786070 + NDNA1TNA_OS 334 0.7976 (2002/2510) 0 * * Os_TE_434352 Chr3 10781933 10782077 - TNR2A 152 0.0227 (68/2997) 1 Intact * Os_TE_434330 Chr3 10771671 10771672 - INDITTO 263 0.2337 (699/2991) 0 * Os_TE_434329 Os_TE_434329 Chr3 10771669 10771668 + INDITTO 263 0.2353 (704/2992) 0 * Os_TE_434330 Os_TE_434310 Chr3 10763537 10763536 - INDITTO 263 0.0007 (2/2963) 0 * * Os_TE_434295 Chr3 10762073 10762072 + TRSA_OS 353 0.0004 (1/2252) 0 * * Os_TE_434225 Chr3 10720427 10720426 - COPIA2-LTR_OS 6433 0.0004 (1/2270) 0 * * Os_TE_434146 Chr3 10698162 10698163 + RETROSAT4_LTR 13504 0.0732 (219/2991) 0 * Os_TE_434145 Os_TE_434145 Chr3 10698158 10698157 - RETROSAT4_LTR 13504 0.2876 (222/772) 0 * Os_TE_434146 Os_TE_434143 Chr3 10696314 10696315 - MPING 430 0.0003 (1/2993) 0 * Os_TE_434142 Os_TE_434142 Chr3 10696312 10696311 + MPING 430 0.0003 (1/2992) 0 * Os_TE_434143 Os_TE_434141 Chr3 10696075 10696074 - STOWAWAY44_OS 240 0.1251 (375/2998) 0 * * Os_TE_434117 Chr3 10682001 10682000 - RETRO2_LTR 12874 0.0749 (219/2925) 0 * * Os_TE_434114 Chr3 10680208 10680209 + OSTE33 1012 0.0007 (2/2829) 0 * Os_TE_434113 Os_TE_434113 Chr3 10680199 10680198 + OSTE33 1012 0.0056 (16/2844) 0 * Os_TE_434114 Os_TE_434061 Chr3 10647659 10647660 + TWIF 586 0.0044 (13/2929) 0 * * Os_TE_434059 Chr3 10646338 10646339 - SC-4_LTR 5218 0.0003 (1/2983) 0 * Os_TE_434058 Os_TE_434058 Chr3 10646334 10646333 + SC-4_LTR 5218 0.0003 (1/2976) 0 * Os_TE_434059 Os_TE_434042 Chr3 10636063 10636064 - MPING 430 0.0003 (1/2931) 0 * Os_TE_434041 Os_TE_434041 Chr3 10636061 10636060 + MPING 430 0.0003 (1/2928) 0 * Os_TE_434042 Os_TE_434027 Chr3 10628137 10628138 + ORSgTEMT00900319 250 0.0020 (6/2989) 0 * * Os_TE_434010 Chr3 10621655 10621656 - ORSgTEMT02000041 194 0.6061 (1814/2993) 0 * Os_TE_434009 Os_TE_434009 Chr3 10621650 10621649 + ORSgTETNOOT00054 239 0.6002 (1791/2984) 0 * Os_TE_434010 Os_TE_433987 Chr3 10603865 10603864 + STOWAWAY51_OS 246 0.0007 (2/2998) 0 * Os_TE_433986 Os_TE_433986 Chr3 10603859 10603860 - STOWAWAY51_OS 246 0.0007 (2/2996) 0 * Os_TE_433987 Os_TE_433956 Chr3 10593113 10593114 - HARB-1_OS 5166 0.0007 (2/2999) 0 * Os_TE_433955 Os_TE_433955 Chr3 10593111 10593110 + HARB-1_OS 5166 0.0007 (2/2998) 0 * Os_TE_433956 Os_TE_433932 Chr3 10582237 10582238 + ORSgTETNOOT01668 244 0.0043 (13/2991) 0 * * Os_TE_433916 Chr3 10572735 10572736 - INDITTO 263 0.0333 (90/2699) 0 * Os_TE_433915 Os_TE_433915 Chr3 10572733 10572732 + INDITTO 263 0.0334 (89/2668) 0 * Os_TE_433916 Os_TE_433905 Chr3 10567195 10567194 - ORSgTEMT02400246 177 0.0003 (1/2989) 0 * Os_TE_433904 Os_TE_433904 Chr3 10567194 10567195 - TYPEM 227 0.0003 (1/2984) 0 * Os_TE_433905 Os_TE_433883 Chr3 10542007 10542008 + RIREX_LTR 8828 0.0073 (22/2998) 0 * Os_TE_433882 Os_TE_433882 Chr3 10542003 10542002 - RIREX_LTR 8828 0.0073 (22/2998) 0 * Os_TE_433883 Os_TE_433880 Chr3 10541558 10541557 + ORSiTEMT00300001 383 0.0013 (4/2968) 0 * * Os_TE_433879 Chr3 10540594 10540595 + F569 228 0.0003 (1/2970) 0 * * Os_TE_433871 Chr3 10539794 10539795 + ORSiTERTOOT00226 792 0.0003 (1/2985) 0 * Os_TE_433870 Os_TE_433870 Chr3 10539790 10539789 - SZ-22_LTR 4403 0.0003 (1/2984) 0 * Os_TE_433871 Os_TE_433869 Chr3 10539579 10539580 + MuDR2_OS 6770 0.0033 (10/2991) 0 * Os_TE_433868 Os_TE_433868 Chr3 10539572 10539571 - MuDR2_OS 6770 0.0040 (12/2994) 0 * Os_TE_433869 Os_TE_433854 Chr3 10532750 10532749 - ENSPM4_OS 11610 0.0047 (14/2967) 0 * * Os_TE_433849 Chr3 10530795 10530796 + SC-8_LTR 4951 0.0003 (1/2996) 0 * Os_TE_433848 Os_TE_433848 Chr3 10530791 10530790 - SC-8_LTR 4951 0.0003 (1/2994) 0 * Os_TE_433849 Os_TE_433833 Chr3 10521151 10521150 - KIDDOC 275 0.0003 (1/2990) 0 * * Os_TE_433816 Chr3 10511966 10511967 + OSTE33 1012 0.8043 (2380/2959) 0 * Os_TE_433815 Os_TE_433815 Chr3 10511957 10511956 + OSTE33 1012 0.8014 (2348/2930) 0 * Os_TE_433816 Os_TE_433809 Chr3 10508063 10508062 - STOWAWAY51_OS 246 0.0003 (1/2999) 0 * * Os_TE_433806 Chr3 10507062 10507063 + NDNA2TNA_OS 346 0.2049 (614/2997) 0 * * Os_TE_433805 Chr3 10506632 10506303 - ORSgTEMT00101259 333 0.1947 (581/2984) 1 Intact * Os_TE_433768 Chr3 10485878 10485879 + ORSgTETNOOT00908 242 0.8021 (2266/2825) 0 * * Os_TE_433765 Chr3 10485465 10485466 + MERMITEA 1710 0.0007 (2/2930) 0 * * Os_TE_433755 Chr3 10478416 10478415 + TWIFB1 3737 0.0003 (1/2996) 0 * * Os_TE_433740 Chr3 10462422 10462421 + DASIA-2 1198 0.0022 (6/2714) 0 * * Os_TE_433718 Chr3 10455733 10455734 - SUSU 279 0.0024 (7/2977) 0 * * Os_TE_433716 Chr3 10455453 10455454 - MDR2 6967 0.6063 (1799/2967) 0 * Os_TE_433715 Os_TE_433715 Chr3 10455445 10455444 - MDR2 6967 0.6096 (1811/2971) 0 * Os_TE_433716 Os_TE_433709 Chr3 10453880 10453881 + ORSiTERTOOT00441 4741 0.0023 (7/2996) 0 * Os_TE_433708 Os_TE_433708 Chr3 10453876 10453875 - ORSiTERTOOT00441 4741 0.0023 (7/2997) 0 * Os_TE_433709 Os_TE_433706 Chr3 10451898 10449970 - MDR2 6967 0.1845 (550/2981) 1 Intact Os_TE_433705 Os_TE_433705 Chr3 10449970 10451892 + MDR2 6967 0.1858 (554/2982) 1 Intact Os_TE_433706 Os_TE_433699 Chr3 10446753 10446754 + OSTE33 1012 0.6020 (1782/2960) 0 * Os_TE_433698 Os_TE_433698 Chr3 10446744 10446743 + OSTE33 1012 0.6013 (1790/2977) 0 * Os_TE_433699 Os_TE_433667 Chr3 10434393 10433913 - OSTE20 496 0.4783 (1380/2885) 1 Intact Os_TE_433664 Os_TE_433664 Chr3 10433911 10434393 + OSTE20 496 0.4970 (1479/2976) 1 Intact Os_TE_433667 Os_TE_433647 Chr3 10425742 10425741 - COPIA2-LTR_OS 6433 0.0003 (1/2978) 0 * * Os_TE_433630 Chr3 10420460 10420108 - CASTAWAY 364 0.1633 (487/2982) 1 Intact Os_TE_433628 Os_TE_433628 Chr3 10420108 10420460 - ORSgTEMT00600146 353 0.1634 (487/2980) 1 Intact Os_TE_433630 Os_TE_433627 Chr3 10419954 10419953 + STOWAWAY51_OS 246 0.0003 (1/2987) 0 * Os_TE_433626 Os_TE_433626 Chr3 10419948 10419949 - STOWAWAY51_OS 246 0.0003 (1/2974) 0 * Os_TE_433627 Os_TE_433608 Chr3 10413908 10413909 - NDNA1TNA_OS 334 0.0043 (13/2989) 0 * Os_TE_433607 Os_TE_433607 Chr3 10413906 10413905 + NDNA1TNA_OS 334 0.0044 (13/2988) 0 * Os_TE_433608 Os_TE_433585 Chr3 10405551 10405552 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_433584 Os_TE_433584 Chr3 10405547 10405546 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_433585 Os_TE_433582 Chr3 10404453 10404454 - AMYLTP 383 0.6367 (1905/2992) 0 * * Os_TE_433554 Chr3 10389913 10389914 + QINNIU 528 0.0043 (13/2991) 0 * Os_TE_433553 Os_TE_433553 Chr3 10389906 10389905 - HATOS1 3488 0.0040 (12/2992) 0 * Os_TE_433554 Os_TE_433544 Chr3 10384774 10384775 + ORSiTERTOOT00296 5553 0.0003 (1/2968) 0 * Os_TE_433543 Os_TE_433543 Chr3 10384770 10384769 - SC-3_LTR 5748 0.0003 (1/2969) 0 * Os_TE_433544 Os_TE_433540 Chr3 10379841 10379842 - INDITTO 263 0.0007 (2/2947) 0 * * Os_TE_433538 Chr3 10379829 10379830 - TYPEM 227 0.0003 (1/2957) 0 * * Os_TE_433534 Chr3 10373989 10373990 - SC-3_LTR 5748 0.0003 (1/2997) 0 * Os_TE_433533 Os_TE_433533 Chr3 10373985 10373984 + ORSiTERTOOT00296 5553 0.0003 (1/2998) 0 * Os_TE_433534 Os_TE_433530 Chr3 10370461 10370462 - SC-8_LTR 4951 0.0003 (1/2990) 0 * Os_TE_433529 Os_TE_433529 Chr3 10370457 10370456 + SC-8_LTR 4951 0.0003 (1/2989) 0 * Os_TE_433530 Os_TE_433505 Chr3 10359671 10359672 + AMYLTP 383 0.0043 (13/2995) 0 * Os_TE_433504 Os_TE_433504 Chr3 10359663 10359662 - AMYLTP 383 0.0037 (11/2995) 0 * Os_TE_433505 Os_TE_433441 Chr3 10339643 10339642 - OSLINE1-2 7128 0.0003 (1/2954) 0 * * Os_TE_433438 Chr3 10332720 10332719 + ORSgTETNOOT00908 242 0.1657 (496/2993) 0 * * Os_TE_433427 Chr3 10326083 10326084 - SC-3_LTR 5748 0.0003 (1/2993) 0 * Os_TE_433426 Os_TE_433426 Chr3 10326079 10326078 + ORSiTERTOOT00296 5553 0.0003 (1/2993) 0 * Os_TE_433427 Os_TE_433420 Chr3 10320119 10320120 - ORSgTEMT02400246 177 0.0873 (233/2669) 0 * * Os_TE_433403 Chr3 10317820 10317821 - TYPEM 227 0.1718 (510/2968) 0 * Os_TE_433402 Os_TE_433402 Chr3 10317819 10317818 - ORSgTEMT02400179 221 0.1699 (508/2990) 0 * Os_TE_433403 Os_TE_433401 Chr3 10317599 10316864 - MUDRN2_OS 756 0.1605 (478/2978) 1 Intact Os_TE_433399 Os_TE_433399 Chr3 10316864 10317599 - MUDRN3_OS 903 0.1583 (473/2988) 1 Intact Os_TE_433401 Os_TE_433374 Chr3 10309736 10309737 - ORSgTETN00200001 10994 0.0013 (4/2969) 0 * Os_TE_433373 Os_TE_433373 Chr3 10309734 10309733 + SPMLIKE 10989 0.0010 (3/2982) 0 * Os_TE_433374 Os_TE_433329 Chr3 10296248 10296249 - MPING 430 0.0004 (1/2826) 0 * Os_TE_433328 Os_TE_433328 Chr3 10296246 10296245 + MPING 430 0.0004 (1/2794) 0 * Os_TE_433329 Os_TE_433320 Chr3 10294175 10294176 - COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_433319 Os_TE_433319 Chr3 10294171 10294170 + COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_433320 Os_TE_433305 Chr3 10286115 10286116 + AMYLTP 383 0.0064 (19/2973) 0 * Os_TE_433304 Os_TE_433304 Chr3 10286107 10286106 - AMYLTP 383 0.0071 (21/2978) 0 * Os_TE_433305 Os_TE_433293 Chr3 10282339 10282340 - SC-8_LTR 4951 0.0003 (1/2994) 0 * Os_TE_433292 Os_TE_433292 Chr3 10282335 10282334 + ORSiTERTOOT00381 4988 0.0003 (1/2992) 0 * Os_TE_433293 Os_TE_433288 Chr3 10279662 10279418 + STOWAWAY51_OS 246 0.8427 (2496/2962) 1 Intact Os_TE_433287 Os_TE_433287 Chr3 10279427 10279649 + ORSgTEMT01600726 235 0.8337 (2281/2736) 1 Intact Os_TE_433288 Os_TE_433285 Chr3 10278847 10278848 + F770 284 0.0044 (13/2950) 0 * * Os_TE_433281 Chr3 10274640 10274639 - RETRO2_LTR 12874 0.0014 (4/2925) 0 * * Os_TE_433271 Chr3 10268507 10268508 + SC-3_LTR 5748 0.0020 (6/2975) 0 * Os_TE_433270 Os_TE_433270 Chr3 10268503 10268502 - SC-3_LTR 5748 0.0013 (4/2971) 0 * Os_TE_433271 Os_TE_433262 Chr3 10254772 10254773 + SZ-55_LTR 10318 0.0003 (1/2981) 0 * Os_TE_433261 Os_TE_433261 Chr3 10254768 10254767 - SZ-55_LTR 10318 0.0003 (1/2977) 0 * Os_TE_433262 Os_TE_433217 Chr3 10231605 10231820 - STOWAWAY44_OS 240 0.8270 (2332/2820) 1 Intact * Os_TE_433216 Chr3 10231533 10231534 + SC-1_LTR 6888 0.0004 (1/2349) 0 * * Os_TE_433166 Chr3 10216985 10216986 + RIREX_LTR 8828 0.0013 (4/2995) 0 * Os_TE_433165 Os_TE_433165 Chr3 10216981 10216980 - RIREX_LTR 8828 0.0013 (4/2994) 0 * Os_TE_433166 Os_TE_433146 Chr3 10204961 10204962 - SZ-67LTR 1540 0.0027 (5/1883) 0 * * Os_TE_433111 Chr3 10186188 10186189 - MPING 430 0.0003 (1/2995) 0 * Os_TE_433110 Os_TE_433110 Chr3 10186186 10186185 + MPING 430 0.0003 (1/2995) 0 * Os_TE_433111 Os_TE_433080 Chr3 10166466 10166465 + ORSgTETNOOT00908 242 0.8490 (2531/2981) 0.83 * * Os_TE_433075 Chr3 10162918 10162919 + NDNA1TNA_OS 334 0.0047 (14/2993) 0 * Os_TE_433074 Os_TE_433074 Chr3 10162916 10162915 - NDNA1TNA_OS 334 0.0047 (14/2988) 0 * Os_TE_433075 Os_TE_433073 Chr3 10162390 10162391 + MPING 430 0.0003 (1/2992) 0 * Os_TE_433072 Os_TE_433072 Chr3 10162388 10162387 - MPING 430 0.0003 (1/2994) 0 * Os_TE_433073 Os_TE_433029 Chr3 10150090 10150089 - NDNA1TNA_OS 334 0.0046 (13/2852) 0 * Os_TE_433028 Os_TE_433028 Chr3 10150085 10150086 + NDNA1TNA_OS 334 0.0043 (13/2997) 0 * Os_TE_433029 Os_TE_433018 Chr3 10142037 10142036 + ORSgTETNOOT00032 218 0.0047 (14/2993) 0 * * Os_TE_433007 Chr3 10137856 10137857 + TRUNCATOR 2918 0.0003 (1/2990) 0 * * Os_TE_433006 Chr3 10137596 10137595 + ORSiTERTOOT00226 792 0.0003 (1/2994) 0 * * Os_TE_433004 Chr3 10137237 10137236 + ORSgTETNOOT00032 218 0.0037 (11/2973) 0 * * Os_TE_433003 Chr3 10137216 10137217 + SZ-48LTR 3632 0.0010 (3/2953) 0 * Os_TE_433002 Os_TE_433002 Chr3 10137212 10137211 - SZ-48LTR 3632 0.0014 (4/2961) 0 * Os_TE_433003 Os_TE_433001 Chr3 10137196 10137197 + ORSgTETNOOT00032 218 0.0030 (9/2966) 0 * * Os_TE_433000 Chr3 10137089 10137090 - ORSgTEMT03000024 384 0.0007 (2/2853) 0 * * Os_TE_432988 Chr3 10135198 10135199 + COPI2_LTR 4733 0.0003 (1/2934) 0 * * Os_TE_432986 Chr3 10133810 10133811 + MPING 430 0.0003 (1/2990) 0 * Os_TE_432985 Os_TE_432985 Chr3 10133808 10133807 - MPING 430 0.0003 (1/2992) 0 * Os_TE_432986 Os_TE_432927 Chr3 10117882 10118517 + Cassandra_OS-LTR 764 0.1888 (565/2993) 1 Intact * Os_TE_432885 Chr3 10096212 10096211 + ORSiTERTOOT00226 792 0.0003 (1/2972) 0 * * Os_TE_432881 Chr3 10090315 10090316 - OSTE33 1012 0.0023 (7/2994) 0 * Os_TE_432880 Os_TE_432880 Chr3 10090306 10090305 - OSTE33 1012 0.0020 (6/2989) 0 * Os_TE_432881 Os_TE_432836 Chr3 10061368 10061369 - RETROSAT4_LTR 13504 0.0023 (7/2991) 0 * Os_TE_432835 Os_TE_432835 Chr3 10061364 10061363 + RETROSAT4_LTR 13504 0.0023 (7/2990) 0 * Os_TE_432836 Os_TE_432800 Chr3 10050883 10050884 - RIREX_LTR 8828 0.0003 (1/2932) 0 * Os_TE_432799 Os_TE_432799 Chr3 10050879 10050878 + RIREX_LTR 8828 0.0003 (1/2939) 0 * Os_TE_432800 Os_TE_432796 Chr3 10050320 10050321 + TELIA 141 0.0003 (1/2949) 0 * * Os_TE_432786 Chr3 10049084 10049083 + ORSiTEMT03300001 145 0.0010 (3/2946) 0 * * Os_TE_432766 Chr3 10040520 10040521 - COPIA2-LTR_OS 6433 0.0004 (1/2734) -1 * Os_TE_432765 Os_TE_432765 Chr3 10040516 10040515 + COPIA2-LTR_OS 6433 0.0004 (1/2758) -1 * Os_TE_432766 Os_TE_432757 Chr3 10038655 10038656 - RETRO2_LTR 12874 0.0077 (23/2989) 0 * Os_TE_432756 Os_TE_432756 Chr3 10038651 10038650 + RETRO2_LTR 12874 0.0077 (23/2987) 0 * Os_TE_432757 Os_TE_432739 Chr3 10036112 10036111 + SZLTR 1249 0.0045 (13/2865) 0 * * Os_TE_432738 Chr3 10035822 10035823 - SZ-35LTR 3853 0.0028 (8/2892) 0 * Os_TE_432737 Os_TE_432737 Chr3 10035818 10035817 - Cassandra_OS-LTR 764 0.0024 (7/2901) 0 * Os_TE_432738 Os_TE_432726 Chr3 10032778 10032777 - OSLINE1-2 7128 0.0007 (2/2977) 0 * * Os_TE_432725 Chr3 10032501 10032502 + RETROSAT2LTR 12796 0.1358 (390/2872) 0 * Os_TE_432724 Os_TE_432724 Chr3 10032499 10032498 - RETROSAT2LTR 12796 0.1710 (507/2965) 0 * Os_TE_432725 Os_TE_432683 Chr3 10021073 10021072 - OSLINE1_1 4159 0.0007 (2/2827) 0 * * Os_TE_432678 Chr3 10019831 10019830 + INDITTO 263 0.3639 (1052/2891) 0 * * Os_TE_432677 Chr3 10019479 10019480 - INDITTO 263 0.6860 (2045/2981) 0 * * Os_TE_432639 Chr3 10006924 10006925 + MPING 430 0.0070 (21/2979) 0 * Os_TE_432638 Os_TE_432638 Chr3 10006922 10006921 - MPING 430 0.0071 (21/2978) 0 * Os_TE_432639 Os_TE_432637 Chr3 10005975 10005976 + COPI2_LTR 4733 0.0167 (48/2881) 0 * Os_TE_432636 Os_TE_432636 Chr3 10005971 10005970 - COPI2_LTR 4733 0.0052 (15/2874) 0 * Os_TE_432637 Os_TE_432606 Chr3 9983201 9983202 - SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_432605 Os_TE_432605 Chr3 9983197 9983196 + SC-8_LTR 4951 0.0003 (1/2996) 0 * Os_TE_432606 Os_TE_432577 Chr3 9966622 9966623 - INDITTO 263 0.1632 (489/2996) 0 * Os_TE_432576 Os_TE_432576 Chr3 9966620 9966619 - ORSgTETNOOT01337 247 0.1616 (482/2982) 0 * Os_TE_432577 Os_TE_432572 Chr3 9965868 9965869 - HARB-1_OS 5166 0.0003 (1/2989) 0 * Os_TE_432571 Os_TE_432571 Chr3 9965866 9965865 + HARB-1_OS 5166 0.0003 (1/2991) 0 * Os_TE_432572 Os_TE_432570 Chr3 9965607 9965608 - ORSgTETNOOT00053 263 0.0667 (200/2997) 0 * Os_TE_432569 Os_TE_432569 Chr3 9965605 9965604 - INDITTO 263 0.0680 (204/2998) 0 * Os_TE_432570 Os_TE_432562 Chr3 9955853 9955854 + GYPSY-A_LTR 8951 0.4589 (1301/2835) 0 * Os_TE_432561 Os_TE_432561 Chr3 9955849 9955848 - SZ-40LTR 2465 0.4923 (1463/2972) 0 * Os_TE_432562 Os_TE_432553 Chr3 9952175 9952176 + ORSgTETNOOT00908 242 0.0003 (1/2984) 0 * * Os_TE_432540 Chr3 9949429 9949430 + INDITTO 263 0.0030 (8/2683) 0 * Os_TE_432539 Os_TE_432539 Chr3 9949427 9949426 - INDITTO 263 0.0026 (7/2691) 0 * Os_TE_432540 Os_TE_432537 Chr3 9949081 9949082 - DITAIL 271 0.0003 (1/2956) 0 * * Os_TE_432529 Chr3 9947840 9947841 - COPI2_LTR 4733 0.0003 (1/2997) 0 * Os_TE_432528 Os_TE_432528 Chr3 9947836 9947835 + COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_432529 Os_TE_432510 Chr3 9939033 9939034 + SETARIA1 1293 0.0003 (1/2936) 0 * * Os_TE_432505 Chr3 9931383 9931384 + OSTONOR1_LTR 6440 0.0100 (30/2992) 0 * * Os_TE_432486 Chr3 9924022 9924021 + ORSgTEMT01601591 242 0.0013 (4/2996) 0 * Os_TE_432485 Os_TE_432485 Chr3 9924016 9924017 + STOWAWAY51_OS 246 0.0013 (4/2995) 0 * Os_TE_432486 Os_TE_432457 Chr3 9917592 9917593 + MPING 430 0.0003 (1/2990) 0 * * Os_TE_432453 Chr3 9915287 9915288 - RETROSAT3_LTR 11537 0.0007 (2/2895) 0 * * Os_TE_432451 Chr3 9914723 9914722 + ORSgTEMT00900648 236 0.0007 (2/2997) 0 * Os_TE_432450 Os_TE_432450 Chr3 9914721 9914722 + ORSgTEMT00901844 250 0.0007 (2/2998) 0 * Os_TE_432451 Os_TE_432433 Chr3 9908094 9908095 + COPIA2-LTR_OS 6433 0.0081 (24/2980) 0 * Os_TE_432432 Os_TE_432432 Chr3 9908090 9908089 - COPIA2-LTR_OS 6433 0.0077 (23/2976) 0 * Os_TE_432433 Os_TE_432391 Chr3 9884768 9884769 + COPIA2-LTR_OS 6433 0.0010 (3/2999) 0 * Os_TE_432390 Os_TE_432390 Chr3 9884764 9884763 - COPIA2-LTR_OS 6433 0.0013 (4/2999) 0 * Os_TE_432391 Os_TE_432383 Chr3 9883025 9883026 - SZ-25LTR 330 0.0017 (5/2994) 0 * Os_TE_432382 Os_TE_432382 Chr3 9883021 9883020 + COPI1_LTR 4721 0.0020 (6/2995) 0 * Os_TE_432383 Os_TE_432378 Chr3 9881034 9881033 - TYPEM 227 0.0042 (12/2872) 0 * Os_TE_432377 Os_TE_432377 Chr3 9881032 9881033 - ORSgTEMT02400248 224 0.0051 (15/2937) 0 * Os_TE_432378 Os_TE_432357 Chr3 9862082 9862081 + ORSiTERTOOT00097 759 0.0003 (1/2995) 0 * Os_TE_432356 Os_TE_432356 Chr3 9862080 9862081 - SZ-22_LTR 4403 0.0003 (1/2988) 0 * Os_TE_432357 Os_TE_432350 Chr3 9858647 9858646 + RETRO2_LTR 12874 0.1844 (549/2977) 0 * * Os_TE_432332 Chr3 9851737 9851738 - SZ-22_LTR 4403 0.0003 (1/2998) 0 * Os_TE_432331 Os_TE_432331 Chr3 9851733 9851732 + ORSiTERTOOT00226 792 0.0003 (1/2996) 0 * Os_TE_432332 Os_TE_432291 Chr3 9838690 9838691 - COPIA2-LTR_OS 6433 0.0090 (27/2989) 0 * * Os_TE_432264 Chr3 9833485 9833484 - OSTE15 1168 0.0003 (1/2986) 0 * * Os_TE_432252 Chr3 9831659 9831660 - NDNA1TNA_OS 334 0.0110 (33/2998) 0 * Os_TE_432251 Os_TE_432251 Chr3 9831658 9831657 + NDNA1TNA_OS 334 0.0110 (33/2996) 0 * Os_TE_432252 Os_TE_432237 Chr3 9827844 9827845 - MPING 430 0.0003 (1/2986) 0 * Os_TE_432236 Os_TE_432236 Chr3 9827842 9827841 + MPING 430 0.0007 (2/2992) 0 * Os_TE_432237 Os_TE_432235 Chr3 9827836 9827837 - MPING 430 0.0007 (2/2977) 0 * Os_TE_432234 Os_TE_432234 Chr3 9827834 9827833 + MPING 430 0.0003 (1/2989) 0 * Os_TE_432235 Os_TE_432231 Chr3 9826981 9827177 - ORSgTEMT02000040 196 0.3207 (959/2990) 1 Intact * Os_TE_432230 Chr3 9826669 9826670 + ORSgTEMT01601591 242 0.0003 (1/2991) 0 * * Os_TE_432201 Chr3 9796102 9796103 - COPIA2-LTR_OS 6433 0.2533 (759/2997) 0 * Os_TE_432200 Os_TE_432200 Chr3 9796098 9796097 + COPIA2-LTR_OS 6433 0.2496 (746/2989) 0 * Os_TE_432201 Os_TE_432199 Chr3 9795959 9795958 - STOWAWAY51_OS 246 0.0010 (3/2993) 0 * Os_TE_432198 Os_TE_432198 Chr3 9795956 9795957 + ORSgTEMT01601591 242 0.0010 (3/2993) 0 * Os_TE_432199 Os_TE_432196 Chr3 9794629 9794630 - COPIA2-LTR_OS 6433 0.0005 (1/1982) 0 * * Os_TE_432186 Chr3 9788866 9788867 + TWIF 586 0.0005 (1/2004) 0 * Os_TE_432185 Os_TE_432185 Chr3 9788859 9788858 - ORSiTETNOOT00134 607 0.0005 (1/2008) 0 * Os_TE_432186 Os_TE_432184 Chr3 9788708 9788707 + ORSiTERTOOT00027 10853 0.0005 (1/2000) 0 * * Os_TE_432168 Chr3 9785039 9785040 - SC-3_LTR 5748 0.0003 (1/2993) 0 * Os_TE_432167 Os_TE_432167 Chr3 9785035 9785034 + ORSiTERTOOT00296 5553 0.0003 (1/2998) 0 * Os_TE_432168 Os_TE_432101 Chr3 9744288 9744289 + MPING 430 0.0003 (1/2956) 0 * Os_TE_432100 Os_TE_432100 Chr3 9744286 9744285 - MPING 430 0.0003 (1/2955) 0 * Os_TE_432101 Os_TE_432074 Chr3 9729071 9729072 - MPING 430 0.0003 (1/2897) 0 * Os_TE_432073 Os_TE_432073 Chr3 9729069 9729068 + MPING 430 0.0003 (1/2919) 0 * Os_TE_432074 Os_TE_432072 Chr3 9729026 9729025 + STOWAWAY51_OS 246 0.0031 (9/2896) 0 * Os_TE_432071 Os_TE_432071 Chr3 9729020 9729021 - STOWAWAY51_OS 246 0.0028 (8/2872) 0 * Os_TE_432072 Os_TE_432037 Chr3 9715017 9715018 - ORSiTETNOOT00134 607 0.0003 (1/2991) 0 * Os_TE_432036 Os_TE_432036 Chr3 9715010 9715009 + TWIF 586 0.0003 (1/2990) 0 * Os_TE_432037 Os_TE_432005 Chr3 9706303 9706302 + STOWAWAY21_OS 243 0.0004 (1/2824) 0 * * Os_TE_432000 Chr3 9705425 9705426 + SC-8_LTR 4951 0.0003 (1/2988) 0 * Os_TE_431999 Os_TE_431999 Chr3 9705421 9705420 - SC-8_LTR 4951 0.0003 (1/2989) 0 * Os_TE_432000 Os_TE_431986 Chr3 9694846 9694845 - ORSgTEMT02400246 177 0.0003 (1/2981) 0 * * Os_TE_431984 Chr3 9694144 9694145 - ORSiTETNOOT00134 607 0.0003 (1/2988) 0 * Os_TE_431983 Os_TE_431983 Chr3 9694137 9694136 + TWIF 586 0.0003 (1/2988) 0 * Os_TE_431984 Os_TE_431964 Chr3 9690097 9690098 + RETRO1_LTR 8314 0.0003 (1/2987) 0 * * Os_TE_431960 Chr3 9689230 9689231 + MPING 430 0.0003 (1/2965) 0 * Os_TE_431959 Os_TE_431959 Chr3 9689228 9689227 - MPING 430 0.0003 (1/2965) 0 * Os_TE_431960 Os_TE_431920 Chr3 9686605 9686606 - SZ-40LTR 2465 0.0025 (7/2789) 0 * Os_TE_431919 Os_TE_431919 Chr3 9686601 9686600 + GYPSY-A_LTR 8951 0.0028 (8/2901) 0 * Os_TE_431920 Os_TE_431917 Chr3 9681182 9681183 - Cassandra_OS-LTR 764 0.0003 (1/2999) 0 * Os_TE_431916 Os_TE_431916 Chr3 9681178 9681177 + Cassandra_OS-LTR 764 0.0003 (1/2999) 0 * Os_TE_431917 Os_TE_431914 Chr3 9680358 9680357 + STOWAWAY51_OS 246 0.0010 (3/2995) 0 * Os_TE_431913 Os_TE_431913 Chr3 9680352 9680353 - STOWAWAY51_OS 246 0.0010 (3/2994) 0 * Os_TE_431914 Os_TE_431884 Chr3 9668571 9668572 - TRUNCATOR2_LTR 2904 0.2426 (684/2820) 0 * * Os_TE_431848 Chr3 9645474 9645475 + MPING 430 0.0083 (25/2996) 0 * Os_TE_431847 Os_TE_431847 Chr3 9645472 9645471 - MPING 430 0.0087 (26/2998) 0 * Os_TE_431848 Os_TE_431815 Chr3 9622279 9622280 + RETROSAT4_LTR 13504 0.0003 (1/2897) 0 * * Os_TE_431808 Chr3 9619368 9619367 + ORSgTEMT01601591 242 0.0067 (20/2980) 0 * Os_TE_431807 Os_TE_431807 Chr3 9619362 9619363 + STOWAWAY51_OS 246 0.0064 (19/2978) 0 * Os_TE_431808 Os_TE_431777 Chr3 9608640 9608641 - STOWAWAY51_OS 246 0.0003 (1/2994) 0 * * Os_TE_431772 Chr3 9604934 9604933 + STOWAWAY51_OS 246 0.0007 (2/2943) 0 * Os_TE_431771 Os_TE_431771 Chr3 9604928 9604929 + ORSgTEMT01601591 242 0.0007 (2/2950) 0 * Os_TE_431772 Os_TE_431770 Chr3 9604421 9604422 + HARB-1_OS 5166 0.0017 (5/2997) 0 * Os_TE_431769 Os_TE_431769 Chr3 9604419 9604418 - HARB-1_OS 5166 0.0017 (5/2997) 0 * Os_TE_431770 Os_TE_431752 Chr3 9591805 9591804 + ORSgTEMT00101620 161 0.1909 (561/2938) 0 * Os_TE_431751 Os_TE_431751 Chr3 9591763 9591764 + NDNA1TNA_OS 334 0.1866 (550/2947) 0 * Os_TE_431752 Os_TE_431743 Chr3 9590247 9590248 + ORSiTERTOOT00226 792 0.0004 (1/2452) 0 * * Os_TE_431727 Chr3 9587990 9587989 - INDITTO 263 0.0013 (4/2997) 0 * Os_TE_431726 Os_TE_431726 Chr3 9587987 9587988 + ORSgTETNOOT02316 263 0.0020 (6/2995) 0 * Os_TE_431727 Os_TE_431721 Chr3 9586933 9586934 - MPING 430 0.0003 (1/2991) 0 * * Os_TE_431694 Chr3 9580356 9580357 - RETROSAT2LTR 12796 0.0021 (6/2888) 0 * Os_TE_431693 Os_TE_431693 Chr3 9580354 9580353 + RETROSAT2LTR 12796 0.0014 (4/2873) 0 * Os_TE_431694 Os_TE_431690 Chr3 9580102 9580101 + ORSgTETNOOT00908 242 0.5314 (1559/2934) 0 * * Os_TE_431677 Chr3 9578156 9578157 + ORSgTERTOOT00009 12852 0.0003 (1/2990) 0 * Os_TE_431676 Os_TE_431676 Chr3 9578152 9578151 - RETRO2_LTR 12874 0.0003 (1/2997) 0 * Os_TE_431677 Os_TE_431670 Chr3 9576994 9576995 - NDNA2TNA_OS 346 0.0003 (1/2994) 0 * Os_TE_431669 Os_TE_431669 Chr3 9576992 9576991 + NDNA2TNA_OS 346 0.0003 (1/2993) 0 * Os_TE_431670 Os_TE_431661 Chr3 9572360 9572361 - COPI2_LTR 4733 0.0010 (3/2977) 0 * * Os_TE_431659 Chr3 9572306 9572307 + CASLET 354 0.1672 (483/2889) 0 * Os_TE_431658 Os_TE_431658 Chr3 9572304 9572303 - CASLET 354 0.2006 (600/2991) 0 * Os_TE_431659 Os_TE_431657 Chr3 9572299 9572300 - ORSgTEMT00600025 357 0.1995 (596/2988) 0 * * Os_TE_431638 Chr3 9568670 9569099 - MPING 430 0.0630 (188/2983) 1 Intact * Os_TE_431602 Chr3 9540585 9540584 - SC-3_LTR 5748 0.0027 (5/1847) 0 * * Os_TE_431600 Chr3 9538427 9538426 + TOS17LTR 138 0.1997 (592/2964) 0 * * Os_TE_431597 Chr3 9537443 9537444 - ORSiTERT00100062 5674 0.0003 (1/2978) 0 * Os_TE_431596 Os_TE_431596 Chr3 9537439 9537438 + OSTONOR1_LTR 6440 0.0003 (1/2967) 0 * Os_TE_431597 Os_TE_431588 Chr3 9536049 9535735 + ORSgTEMT00100291 345 0.7968 (2369/2973) 1 Intact Os_TE_431583 Os_TE_431583 Chr3 9535700 9536047 + NDNA2TNA_OS 346 0.7972 (2378/2983) 1 Intact Os_TE_431588 Os_TE_431580 Chr3 9534507 9534506 + RIREX_LTR 8828 0.0013 (4/2967) 0 * * Os_TE_431578 Chr3 9534171 9534172 - RIREX_LTR 8828 0.0003 (1/2982) 0 * Os_TE_431577 Os_TE_431577 Chr3 9534167 9534166 + RIREX_LTR 8828 0.0003 (1/2982) 0 * Os_TE_431578 Os_TE_431567 Chr3 9528930 9528931 - TRUNCATOR2_LTR 2904 0.2194 (624/2844) 0 * Os_TE_431566 Os_TE_431566 Chr3 9528926 9528925 + ORSiTERTOOT00028 8600 0.1727 (466/2699) 0 * Os_TE_431567 Os_TE_431564 Chr3 9528514 9528515 - OSTE33 1012 0.5441 (1598/2937) 0 * * Os_TE_431561 Chr3 9528024 9528025 + OLO24 345 0.0003 (1/2994) 0 * * Os_TE_431547 Chr3 9527156 9527157 - STOWAWAY44_OS 240 0.0003 (1/2956) 0 * * Os_TE_431530 Chr3 9516631 9516632 - MPING 430 0.0003 (1/2996) 0 * * Os_TE_431528 Chr3 9516544 9516545 - MPING 430 0.0003 (1/2991) 0 * Os_TE_431527 Os_TE_431527 Chr3 9516542 9516541 + MPING 430 0.0003 (1/2992) 0 * Os_TE_431528 Os_TE_431522 Chr3 9514855 9514856 - COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_431521 Os_TE_431521 Chr3 9514851 9514850 + COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_431522 Os_TE_431519 Chr3 9513823 9513563 + ORSgTEMT06100010 269 0.4830 (1448/2998) 1 Intact Os_TE_431518 Os_TE_431518 Chr3 9513563 9513823 + ORSgTEMT06100005 261 0.4810 (1442/2998) 1 Intact Os_TE_431519 Os_TE_431488 Chr3 9491299 9491298 + TRSA_OS 353 0.0003 (1/2994) 0 * * Os_TE_431472 Chr3 9477459 9477458 + SZ-54_LTR 5203 0.0057 (17/2989) 0 * * Os_TE_431418 Chr3 9453236 9453237 + TWIF 586 0.0003 (1/2977) 0 * * Os_TE_431393 Chr3 9442651 9442650 + STOWAWAY44_OS 240 0.0003 (1/2987) 0 * * Os_TE_431358 Chr3 9433407 9433408 + STOWAWAY51_OS 246 0.0007 (2/2981) 0 * * Os_TE_431343 Chr3 9431956 9431955 + OLO24 345 0.0003 (1/2943) 0 * * Os_TE_431328 Chr3 9427120 9427549 + MPING 430 0.0644 (193/2998) 1 Intact * Os_TE_431327 Chr3 9426255 9426256 - COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * * Os_TE_431324 Chr3 9424923 9424924 - MuDR3_OS 8604 0.0412 (123/2987) 0 * * Os_TE_431310 Chr3 9420414 9420563 + ORSgTEMT01702143 140 0.6168 (1846/2993) 1 Intact * Os_TE_431284 Chr3 9410437 9410438 - TYPEU 362 0.0054 (16/2936) 0 * Os_TE_431283 Os_TE_431283 Chr3 9410429 9410428 - ORSgTEMT03000007 372 0.0100 (19/1895) 0 * Os_TE_431284 Os_TE_431273 Chr3 9406849 9406850 - ORSgTEMT00501403 148 0.0054 (16/2990) 0 * * Os_TE_431252 Chr3 9400142 9400141 - GLUTEL1LIKE 273 0.3190 (887/2781) 0 * * Os_TE_431235 Chr3 9398175 9397963 - ORSgTEMT00900005 240 0.6562 (1966/2996) 1 Intact Os_TE_431230 Os_TE_431230 Chr3 9397957 9398175 + ORSgTEMT00900402 248 0.6487 (1933/2980) 1 Intact Os_TE_431235 Os_TE_431212 Chr3 9391928 9391680 + STOWAWAY51_OS 246 0.6309 (1865/2956) 1 Intact Os_TE_431211 Os_TE_431211 Chr3 9391680 9391925 + STOWAWAY51_OS 246 0.6234 (1816/2913) 1 Intact Os_TE_431212 Os_TE_431209 Chr3 9391323 9391322 - ORSgTEMT00901723 248 0.0047 (14/2977) 0 * Os_TE_431208 Os_TE_431208 Chr3 9391322 9391323 - ORSgTEMT00900099 250 0.0044 (13/2975) 0 * Os_TE_431209 Os_TE_431200 Chr3 9389865 9389864 + ORSgTETNOOT01846 238 0.0044 (12/2749) 0 * * Os_TE_431190 Chr3 9388683 9388684 - HARB-1_OS 5166 0.0014 (4/2962) 0 * Os_TE_431189 Os_TE_431189 Chr3 9388681 9388680 + HARB-1_OS 5166 0.0013 (4/2969) 0 * Os_TE_431190 Os_TE_431176 Chr3 9382230 9382229 + ORSgTEMT00501608 146 0.0017 (5/2988) 0 * * Os_TE_431165 Chr3 9379572 9379571 - ORSgTEMT02000040 196 0.0007 (2/2948) 0 * * Os_TE_431150 Chr3 9369328 9369327 - ORSgTEMT00101129 160 0.0014 (4/2956) 0 * * Os_TE_431145 Chr3 9368909 9368908 - ORSgTEMT01702216 170 0.0013 (4/2976) 0 * * Os_TE_431142 Chr3 9367506 9367170 + NDNA1TNA_OS 334 0.6481 (1936/2987) 1 Intact Os_TE_431140 Os_TE_431140 Chr3 9367170 9367503 - NDNA1TNA_OS 334 0.6485 (1935/2984) 1 Intact Os_TE_431142 Os_TE_431135 Chr3 9366087 9366086 + ORSgTEMT00300069 394 0.0003 (1/2909) 0 * * Os_TE_431126 Chr3 9362339 9362340 - SZ-35LTR 3853 0.3644 (1084/2975) 0 * * Os_TE_431117 Chr3 9357325 9357324 - ORSgTEMT01601208 238 0.0017 (3/1809) 0 * Os_TE_431116 Os_TE_431116 Chr3 9357322 9357323 - ORSgTEMT01601208 238 0.0027 (5/1850) 0 * Os_TE_431117 Os_TE_431115 Chr3 9356098 9356097 + STOWAWAY51_OS 246 0.0017 (5/2996) 0 * Os_TE_431114 Os_TE_431114 Chr3 9356092 9356093 + ORSgTEMT01601591 242 0.0017 (5/2998) 0 * Os_TE_431115 Os_TE_431112 Chr3 9352873 9352872 - SZ-9LTR 965 0.0033 (10/2991) 0 * * Os_TE_431109 Chr3 9350711 9350712 + RIREX_LTR 8828 0.0037 (11/2997) 0 * Os_TE_431108 Os_TE_431108 Chr3 9350707 9350706 - RIREX_LTR 8828 0.0037 (11/2995) 0 * Os_TE_431109 Os_TE_431086 Chr3 9341482 9341483 - SZ-48LTR 3632 0.3742 (1111/2969) 0 * Os_TE_431085 Os_TE_431085 Chr3 9341478 9341477 + SZ-48LTR 3632 0.3828 (1146/2994) 0 * Os_TE_431086 Os_TE_431084 Chr3 9341313 9341312 + CACTA-B 1103 0.0003 (1/2954) 0 * Os_TE_431083 Os_TE_431083 Chr3 9341312 9341313 - CACTA-H 1152 0.0003 (1/2967) 0 * Os_TE_431084 Os_TE_431021 Chr3 9307096 9307097 - RETRO2_LTR 12874 0.4552 (1361/2990) 0 * Os_TE_431020 Os_TE_431020 Chr3 9307092 9307091 + RETRO2_LTR 12874 0.4569 (1362/2981) 0 * Os_TE_431021 Os_TE_431010 Chr3 9305040 9305041 + ORSgTEMT01601591 242 0.0013 (4/2988) 0 * * Os_TE_430991 Chr3 9301750 9301749 + TRUNCATOR 2918 0.0010 (3/2941) 0 * * Os_TE_430977 Chr3 9298241 9298240 + ORSgTEMT01601591 242 0.0003 (1/2993) 0 * Os_TE_430976 Os_TE_430976 Chr3 9298235 9298236 + STOWAWAY51_OS 246 0.0003 (1/2997) 0 * Os_TE_430977 Os_TE_430974 Chr3 9296247 9296246 - NDNA1TNA_OS 334 0.0033 (10/2994) 0 * * Os_TE_430969 Chr3 9292970 9292971 + RETROSAT2LTRA 3112 0.3046 (908/2981) 0 * * Os_TE_430964 Chr3 9292127 9292126 + RETRO1_LTR 8314 0.0024 (7/2864) 0 * * Os_TE_430923 Chr3 9277435 9277434 - ORSgTEMT01601432 239 0.0003 (1/2952) 0 * Os_TE_430922 Os_TE_430922 Chr3 9277432 9277433 - ORSgTEMT01600152 226 0.0003 (1/2940) 0 * Os_TE_430923 Os_TE_430897 Chr3 9262874 9262875 + TRUNCATOR2_LTR 2904 0.3727 (1102/2957) 0 * * Os_TE_430878 Chr3 9254963 9254964 - ORSgTETNOOT00053 263 0.0784 (228/2909) 0 * Os_TE_430877 Os_TE_430877 Chr3 9254961 9254960 - INDITTO 263 0.0781 (230/2944) 0 * Os_TE_430878 Os_TE_430875 Chr3 9252789 9252790 + MPING 430 0.0090 (27/2989) 0 * Os_TE_430874 Os_TE_430874 Chr3 9252787 9252786 - MPING 430 0.0087 (26/2992) 0 * Os_TE_430875 Os_TE_430871 Chr3 9246527 9246526 + TELIA 141 0.0003 (1/2943) 0 * * Os_TE_430868 Chr3 9246300 9246299 + ORSgTERT00200526 4029 0.0010 (3/2987) 0 * * Os_TE_430844 Chr3 9241119 9241118 - NDNA1TNA_OS 334 0.0004 (1/2789) 0 * * Os_TE_430843 Chr3 9240503 9240074 - MPING 430 0.0593 (174/2932) 1 Intact Os_TE_430842 Os_TE_430842 Chr3 9240074 9240503 + MPING 430 0.0614 (180/2933) 1 Intact Os_TE_430843 Os_TE_430841 Chr3 9239905 9239906 - CASTAWAY 364 0.0017 (5/2986) 0 * Os_TE_430840 Os_TE_430840 Chr3 9239904 9239903 + ORSgTEMT00600120 364 0.0017 (5/2989) 0 * Os_TE_430841 Os_TE_430834 Chr3 9239189 9239190 + OSTE33 1012 0.0060 (18/2988) 0 * Os_TE_430833 Os_TE_430833 Chr3 9239180 9239179 + OSTE33 1012 0.0064 (19/2985) 0 * Os_TE_430834 Os_TE_430827 Chr3 9238360 9237110 - RETRO2_LTR 12874 0.6413 (1859/2899) 1 Solo_LTR Os_TE_430824 Os_TE_430824 Chr3 9237110 9238360 + ORSgTERTOOT00009 12852 0.6334 (1819/2872) 1 Intact Os_TE_430827 Os_TE_430787 Chr3 9217981 9217980 + ORSgTEMT01400031 216 0.0020 (6/2992) 0 * Os_TE_430786 Os_TE_430786 Chr3 9217975 9217976 + STOWAWAY51_OS 246 0.0017 (5/2992) 0 * Os_TE_430787 Os_TE_430769 Chr3 9212381 9212382 + RIREX_LTR 8828 0.0023 (7/2994) 0 * Os_TE_430768 Os_TE_430768 Chr3 9212377 9212376 - RIREX_LTR 8828 0.0020 (6/2995) 0 * Os_TE_430769 Os_TE_430727 Chr3 9204568 9204567 + STOWAWAY44_OS 240 0.0007 (2/2993) 0 * Os_TE_430726 Os_TE_430726 Chr3 9204565 9204566 - STOWAWAY44_OS 240 0.0007 (2/2994) 0 * Os_TE_430727 Os_TE_430724 Chr3 9202047 9202048 + F770 284 0.0023 (7/2990) 0 * * Os_TE_430723 Chr3 9201472 9201473 - COPI2_LTR 4733 0.0003 (1/2994) 0 * * Os_TE_430711 Chr3 9196010 9196011 + ORSgTEMT01400018 210 0.0070 (3/428) -1 * * Os_TE_430668 Chr3 9178286 9178285 + ORSgTERT00201086 9728 0.0003 (1/2983) 0 * * Os_TE_430666 Chr3 9177985 9177984 - TRUNCATOR 2918 0.0737 (220/2986) 0 * Os_TE_430665 Os_TE_430665 Chr3 9177984 9177985 + TRUNCATOR 2918 0.0776 (232/2991) 0 * Os_TE_430666 Os_TE_430653 Chr3 9173481 9173482 + ORSiTERTOOT00441 4741 0.0003 (1/2965) 0 * Os_TE_430652 Os_TE_430652 Chr3 9173477 9173476 - ORSiTERTOOT00441 4741 0.0004 (1/2775) 0 * Os_TE_430653 Os_TE_430644 Chr3 9170873 9170874 - MUDRN3_OS 903 0.5483 (1617/2949) 0 * Os_TE_430643 Os_TE_430643 Chr3 9170865 9170864 - MUDRN3_OS 903 0.5577 (1668/2991) 0 * Os_TE_430644 Os_TE_430639 Chr3 9169008 9169007 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * * Os_TE_430638 Chr3 9167851 9167850 - TYPEM 227 0.0003 (1/2991) 0 * Os_TE_430637 Os_TE_430637 Chr3 9167850 9167851 - ORSgTEMT02400246 177 0.0003 (1/2978) 0 * Os_TE_430638 Os_TE_430626 Chr3 9165704 9165705 + RIREX_LTR 8828 0.0088 (26/2944) 0 * Os_TE_430625 Os_TE_430625 Chr3 9165700 9165699 - RIREX_LTR 8828 0.0085 (25/2929) 0 * Os_TE_430626 Os_TE_430602 Chr3 9160329 9160328 - INDITTO 263 0.2459 (706/2871) 0 * * Os_TE_430571 Chr3 9154291 9154290 + NDNA2TNA_OS 346 0.0027 (8/2984) 0 * * Os_TE_430570 Chr3 9153954 9153955 + TNR2A 152 0.0023 (7/2995) 0 * Os_TE_430569 Os_TE_430569 Chr3 9153938 9153937 + TNR2A 152 0.0020 (6/2994) 0 * Os_TE_430570 Os_TE_430568 Chr3 9153893 9153894 - RIREX_LTR 8828 0.0027 (8/2995) 0 * Os_TE_430567 Os_TE_430567 Chr3 9153889 9153888 + RIREX_LTR 8828 0.0027 (8/2994) 0 * Os_TE_430568 Os_TE_430552 Chr3 9151134 9151133 - ENSPM4_OS 11610 0.0012 (3/2410) 0 * * Os_TE_430551 Chr3 9151102 9151103 + COPIA2-LTR_OS 6433 0.0008 (2/2579) 0 * Os_TE_430550 Os_TE_430550 Chr3 9151098 9151097 - COPIA2-LTR_OS 6433 0.0008 (2/2555) 0 * Os_TE_430551 Os_TE_430548 Chr3 9151083 9151082 - INDITTO 263 0.0015 (4/2613) 0 * * Os_TE_430543 Chr3 9150845 9150498 + NDNA2TNA_OS 346 0.4564 (1345/2947) 1 Intact Os_TE_430538 Os_TE_430538 Chr3 9150497 9150845 - NDNA2TNA_OS 346 0.4601 (1374/2986) 1 Intact Os_TE_430543 Os_TE_430518 Chr3 9144378 9144377 + RETROSAT4_LTR 13504 0.5468 (1582/2893) 0 * * Os_TE_430499 Chr3 9138529 9138530 - ORSiTETNOOT00134 607 0.0003 (1/2987) 0 * Os_TE_430498 Os_TE_430498 Chr3 9138522 9138521 + TWIF 586 0.0003 (1/2988) 0 * Os_TE_430499 Os_TE_430494 Chr3 9136427 9136428 + RIREX_LTR 8828 0.0013 (4/2988) 0 * Os_TE_430493 Os_TE_430493 Chr3 9136423 9136422 - RIREX_LTR 8828 0.0013 (4/2990) 0 * Os_TE_430494 Os_TE_430453 Chr3 9098319 9104851 - RIRE2_LTR 11306 0.4261 (1277/2997) 1 Intact * Os_TE_430451 Chr3 9096778 9096779 - RIREX_LTR 8828 0.0003 (1/2992) 0 * * Os_TE_430416 Chr3 9083103 9083104 + ORSgTETNOOT01219 231 0.0027 (8/2959) 0 * Os_TE_430415 Os_TE_430415 Chr3 9083097 9083096 + ORSgTETNOOT00908 242 0.0028 (8/2837) 0 * Os_TE_430416 Os_TE_430414 Chr3 9082508 9082509 - RIREX_LTR 8828 0.0003 (1/2993) 0 * Os_TE_430413 Os_TE_430413 Chr3 9082504 9082503 + RIREX_LTR 8828 0.0003 (1/2993) 0 * Os_TE_430414 Os_TE_430412 Chr3 9082169 9081824 - NDNA2TNA_OS 346 0.4347 (1299/2988) 1 Intact Os_TE_430410 Os_TE_430410 Chr3 9081824 9082169 + NDNA2TNA_OS 346 0.4333 (1296/2991) 1 Intact Os_TE_430412 Os_TE_430339 Chr3 9039088 9039089 - OSTE15 1168 0.0027 (8/2996) 0 * * Os_TE_430337 Chr3 9038225 9038226 - SZ-62LTR 3649 0.0017 (5/2997) 0 * * Os_TE_430296 Chr3 9026944 9026945 - COPI2_LTR 4733 0.0013 (4/2991) 0 * Os_TE_430295 Os_TE_430295 Chr3 9026940 9026939 + COPI2_LTR 4733 0.0013 (4/2992) 0 * Os_TE_430296 Os_TE_430288 Chr3 9024975 9025213 + ORSgTEMT01601934 207 0.4116 (1231/2991) 1 Intact * Os_TE_430286 Chr3 9024854 9024855 - COPI2_LTR 4733 0.0007 (2/2983) 0 * Os_TE_430285 Os_TE_430285 Chr3 9024850 9024849 + COPI2_LTR 4733 0.0007 (2/2981) 0 * Os_TE_430286 Os_TE_430276 Chr3 9015165 9014821 + OLO24 345 0.4148 (1237/2982) 1 Intact Os_TE_430275 Os_TE_430275 Chr3 9014821 9015165 - OLO24 345 0.4176 (1246/2984) 1 Intact Os_TE_430276 Os_TE_430270 Chr3 9013699 9013700 - INDITTO 263 0.0017 (5/2996) 0 * Os_TE_430269 Os_TE_430269 Chr3 9013697 9013696 + INDITTO 263 0.0013 (4/2997) 0 * Os_TE_430270 Os_TE_430268 Chr3 9012715 9012714 - ORSgTETNOOT00118 134 0.0003 (1/2988) 0 * * Os_TE_430266 Chr3 9011419 9011420 - MPING 430 0.0003 (1/2994) 0 * Os_TE_430265 Os_TE_430265 Chr3 9011417 9011416 + MPING 430 0.0003 (1/2992) 0 * Os_TE_430266 Os_TE_430263 Chr3 8997136 9006258 - LINE-4_OS 3662 0.4063 (1210/2978) 1 Intact * Os_TE_430262 Chr3 8997046 8997047 - MPING 430 0.0003 (1/2980) 0 * Os_TE_430261 Os_TE_430261 Chr3 8997044 8997043 + MPING 430 0.0003 (1/2983) 0 * Os_TE_430262 Os_TE_430238 Chr3 8994637 8994638 - ORSgTETNOOT02417 265 0.0003 (1/2988) 0 * Os_TE_430237 Os_TE_430237 Chr3 8994635 8994634 - INDITTO 263 0.0003 (1/2988) 0 * Os_TE_430238 Os_TE_430194 Chr3 8981748 8981747 + COPI2_LTR 4733 0.0003 (1/2988) 0 * * Os_TE_430191 Chr3 8980106 8976203 + RETROSAT4_LTR 13504 0.4295 (1204/2803) 1 Solo_LTR Os_TE_430187 Os_TE_430187 Chr3 8976204 8980106 - RETROSAT4_LTR 13504 0.4624 (1352/2924) 1 Solo_LTR Os_TE_430191 Os_TE_430186 Chr3 8975936 8970124 - RETRO2_LTR 12874 0.4350 (1295/2977) 1 Intact Os_TE_430181 Os_TE_430181 Chr3 8970124 8975936 + RETRO2_LTR 12874 0.4354 (1293/2970) 1 Intact Os_TE_430186 Os_TE_430133 Chr3 8949417 8949418 - ORSgTETNOOT02497 262 0.0003 (1/2935) 0 * Os_TE_430132 Os_TE_430132 Chr3 8949415 8949414 - INDITTO 263 0.0003 (1/2949) 0 * Os_TE_430133 Os_TE_430106 Chr3 8943793 8943792 + NDNA2TNA_OS 346 0.0020 (6/2978) 0 * Os_TE_430105 Os_TE_430105 Chr3 8943780 8943781 - NDNA2TNA_OS 346 0.0017 (5/2993) 0 * Os_TE_430106 Os_TE_430103 Chr3 8943682 8943683 - AMYLTP 383 0.0063 (19/2996) 0 * Os_TE_430102 Os_TE_430102 Chr3 8943674 8943673 + AMYLTP 383 0.0067 (20/2998) 0 * Os_TE_430103 Os_TE_430099 Chr3 8941864 8941865 - COPI2_LTR 4733 0.0003 (1/2980) 0 * Os_TE_430098 Os_TE_430098 Chr3 8941860 8941859 + COPI2_LTR 4733 0.0003 (1/2983) 0 * Os_TE_430099 Os_TE_430058 Chr3 8932626 8932627 + SZ-9LTR 965 0.0071 (21/2959) 0 * Os_TE_430057 Os_TE_430057 Chr3 8932622 8932621 - SZ-9LTR 965 0.0071 (21/2953) 0 * Os_TE_430058 Os_TE_430032 Chr3 8920966 8920967 - ORSgTEMT02000041 194 0.0274 (45/1645) 0 * * Os_TE_430030 Chr3 8920219 8920220 + NDNA1TNA_OS 334 0.0013 (4/2997) 0 * Os_TE_430029 Os_TE_430029 Chr3 8920217 8920216 - NDNA1TNA_OS 334 0.0013 (4/2997) 0 * Os_TE_430030 Os_TE_430018 Chr3 8913849 8913850 + RIREX_LTR 8828 0.0013 (4/2984) 0 * Os_TE_430017 Os_TE_430017 Chr3 8913845 8913844 - RIREX_LTR 8828 0.0010 (3/2981) 0 * Os_TE_430018 Os_TE_430016 Chr3 8913183 8913182 + OSTE33 1012 0.0003 (1/2983) 0 * * Os_TE_430015 Chr3 8913148 8913149 + OSTE33 1012 0.2434 (724/2975) 0 * Os_TE_430014 Os_TE_430014 Chr3 8913139 8913138 + OSTE33 1012 0.2504 (748/2987) 0 * Os_TE_430015 Os_TE_429905 Chr3 8873024 8873023 - COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * * Os_TE_429900 Chr3 8869382 8869383 + OLO24 345 0.0003 (1/2995) 0 * Os_TE_429899 Os_TE_429899 Chr3 8869380 8869379 - OLO24 345 0.0003 (1/2996) 0 * Os_TE_429900 Os_TE_429890 Chr3 8864295 8864296 + ORSgTETNOOT01998 254 0.5835 (1750/2999) 0 * Os_TE_429889 Os_TE_429889 Chr3 8864293 8864292 - ORSgTETNOOT00591 258 0.5821 (1744/2996) 0 * Os_TE_429890 Os_TE_429884 Chr3 8862246 8862245 + COPI2_LTR 4733 0.0091 (27/2957) 0 * * Os_TE_429876 Chr3 8860104 8860105 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_429875 Os_TE_429875 Chr3 8860100 8860099 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_429876 Os_TE_429873 Chr3 8859201 8859202 - STOWAWAY9_OS 235 0.0005 (1/2091) 0 * * Os_TE_429870 Chr3 8853421 8853420 - STOWAWAY51_OS 246 0.0003 (1/2995) 0 * Os_TE_429869 Os_TE_429869 Chr3 8853415 8853416 + STOWAWAY51_OS 246 0.0003 (1/2998) 0 * Os_TE_429870 Os_TE_429867 Chr3 8849802 8849803 - TELIA 141 0.0003 (1/2986) 0 * Os_TE_429866 Os_TE_429866 Chr3 8849794 8849793 + TELIA 141 0.0003 (1/2984) 0 * Os_TE_429867 Os_TE_429861 Chr3 8848124 8848125 + STOWAWAY51_OS 246 0.0007 (2/2997) 0 * * Os_TE_429852 Chr3 8846565 8846564 - STOWAWAY44_OS 240 0.0020 (6/2988) 0 * Os_TE_429851 Os_TE_429851 Chr3 8846562 8846563 + STOWAWAY44_OS 240 0.0020 (6/2992) 0 * Os_TE_429852 Os_TE_429832 Chr3 8837455 8837454 + ORSiTETNOOT00107 906 0.0835 (250/2993) 0 * Os_TE_429831 Os_TE_429831 Chr3 8837451 8837452 - ORSiTETNOOT00107 906 0.0838 (251/2995) 0 * Os_TE_429832 Os_TE_429828 Chr3 8833710 8833711 + ORSgTETNOOT00908 242 0.0003 (1/2999) 0 * * Os_TE_429820 Chr3 8826511 8826512 + STOWAWAY51_OS 246 0.0812 (242/2982) 0 * * Os_TE_429819 Chr3 8826228 8824850 + OSTE33 1012 0.4095 (1222/2984) 1 Intact Os_TE_429818 Os_TE_429818 Chr3 8824850 8826228 + OSTE33 1012 0.4132 (1236/2991) 1 Intact Os_TE_429819 Os_TE_429817 Chr3 8824820 8824821 - MPING 430 0.0003 (1/2987) 0 * Os_TE_429816 Os_TE_429816 Chr3 8824818 8824817 + MPING 430 0.0003 (1/2912) 0 * Os_TE_429817 Os_TE_429804 Chr3 8812993 8812994 - HARB-1_OS 5166 0.0003 (1/2976) 0 * Os_TE_429803 Os_TE_429803 Chr3 8812991 8812990 + HARB-1_OS 5166 0.0003 (1/2980) 0 * Os_TE_429804 Os_TE_429793 Chr3 8805359 8805360 - OSTE24 683 0.0020 (6/2994) 0 * * Os_TE_429784 Chr3 8797833 8797834 + TELIA 141 0.0003 (1/2985) 0 * Os_TE_429783 Os_TE_429783 Chr3 8797825 8797824 + TELIA 141 0.0003 (1/2986) 0 * Os_TE_429784 Os_TE_429773 Chr3 8791768 8791534 - ORSgTETNOOT01219 231 0.7190 (2149/2989) 1 Intact * Os_TE_429770 Chr3 8788721 8788722 - COPIA2-LTR_OS 6433 0.0003 (1/2938) 0 * Os_TE_429769 Os_TE_429769 Chr3 8788717 8788716 + COPIA2-LTR_OS 6433 0.0003 (1/2935) 0 * Os_TE_429770 Os_TE_429768 Chr3 8788473 8788474 - RIREX_LTR 8828 0.0021 (6/2902) 0 * Os_TE_429767 Os_TE_429767 Chr3 8788469 8788468 + RIREX_LTR 8828 0.0017 (5/2922) 0 * Os_TE_429768 Os_TE_429728 Chr3 8774108 8774109 - COPIA2-LTR_OS 6433 0.0003 (1/2973) 0 * Os_TE_429727 Os_TE_429727 Chr3 8774104 8774103 + COPIA2-LTR_OS 6433 0.0003 (1/2973) 0 * Os_TE_429728 Os_TE_429724 Chr3 8773112 8773113 - ORSgTEMT00600398 354 0.0003 (1/2922) 0 * * Os_TE_429606 Chr3 8724975 8724976 - SC-8_LTR 4951 0.0003 (1/2974) 0 * Os_TE_429605 Os_TE_429605 Chr3 8724971 8724970 + SC-8_LTR 4951 0.0003 (1/2964) 0 * Os_TE_429606 Os_TE_429570 Chr3 8702026 8702027 - ORSgTETNOOT00754 253 0.0013 (4/2992) 0 * Os_TE_429569 Os_TE_429569 Chr3 8702022 8702021 + ORSgTETNOOT01686 252 0.0013 (4/2992) 0 * Os_TE_429570 Os_TE_429566 Chr3 8698275 8698276 - ORSiTETNOOT00134 607 0.0003 (1/2983) 0 * Os_TE_429565 Os_TE_429565 Chr3 8698268 8698267 + TWIF 586 0.0003 (1/2985) 0 * Os_TE_429566 Os_TE_429531 Chr3 8688092 8688093 + RIREX_LTR 8828 0.0230 (68/2962) 0 * Os_TE_429530 Os_TE_429530 Chr3 8688088 8688087 - RIREX_LTR 8828 0.0226 (67/2967) 0 * Os_TE_429531 Os_TE_429521 Chr3 8683261 8683262 + OSTE33 1012 0.0915 (274/2994) 0 * Os_TE_429520 Os_TE_429520 Chr3 8683252 8683251 - OSTE33 1012 0.0879 (263/2991) 0 * Os_TE_429521 Os_TE_429497 Chr3 8671879 8671880 - TESS 244 0.0024 (7/2881) 0 * Os_TE_429496 Os_TE_429496 Chr3 8671872 8671871 + TESS 244 0.0024 (7/2878) 0 * Os_TE_429497 Os_TE_429479 Chr3 8658925 8658926 - AMYLTP 383 0.2766 (823/2975) 0 * Os_TE_429478 Os_TE_429478 Chr3 8658918 8658917 + AMYLTP 383 0.2779 (828/2980) 0 * Os_TE_429479 Os_TE_429473 Chr3 8655805 8655804 + RIRE2_LTR 11306 0.0003 (1/2997) 0 * * Os_TE_429469 Chr3 8653414 8653413 + CACTA-B 1103 0.0020 (6/2980) 0 * Os_TE_429468 Os_TE_429468 Chr3 8653413 8653414 - CACTA-H 1152 0.0020 (6/2974) 0 * Os_TE_429469 Os_TE_429467 Chr3 8653361 8653362 + NDNA1TNA_OS 334 0.0255 (76/2984) 0 * Os_TE_429466 Os_TE_429466 Chr3 8653359 8653358 - NDNA1TNA_OS 334 0.0251 (75/2987) 0 * Os_TE_429467 Os_TE_429453 Chr3 8649333 8649334 + TELIA 141 0.0003 (1/2968) 0 * Os_TE_429452 Os_TE_429452 Chr3 8649325 8649324 - TELIA 141 0.0003 (1/2968) 0 * Os_TE_429453 Os_TE_429451 Chr3 8648247 8648248 - MPING 430 0.0003 (1/2952) 0 * Os_TE_429450 Os_TE_429450 Chr3 8648245 8648244 + MPING 430 0.0003 (1/2949) 0 * Os_TE_429451 Os_TE_429442 Chr3 8645459 8645460 - ORSgTETNOOT00754 253 0.0003 (1/2930) 0 * Os_TE_429441 Os_TE_429441 Chr3 8645454 8645453 - ORSgTETNOOT00477 252 0.0003 (1/2927) 0 * Os_TE_429442 Os_TE_429420 Chr3 8637839 8637840 - HARB-1_OS 5166 0.0023 (7/2997) 0 * Os_TE_429419 Os_TE_429419 Chr3 8637837 8637836 + HARB-1_OS 5166 0.0023 (7/2996) 0 * Os_TE_429420 Os_TE_429415 Chr3 8635764 8635763 + CASTAWAY 364 0.0023 (7/2994) 0 * * Os_TE_429398 Chr3 8625837 8625838 - AMYLTP 383 0.2317 (691/2982) 0 * Os_TE_429397 Os_TE_429397 Chr3 8625829 8625828 + AMYLTP 383 0.2370 (710/2996) 0 * Os_TE_429398 Os_TE_429389 Chr3 8623211 8623210 + CLOUD-7 495 0.6903 (2008/2909) 0 * * Os_TE_429384 Chr3 8622785 8609636 + ORSgTERTOOT00009 12852 0.2882 (854/2963) 1 Intact * Os_TE_429358 Chr3 8603007 8603006 + OLO24C 356 0.0010 (3/2883) 0 * * Os_TE_429328 Chr3 8597929 8597928 - ORSgTEMT00600304 361 0.4990 (1489/2984) 0 * * Os_TE_429318 Chr3 8591956 8591955 + ORSiTERTOOT00296 5553 0.0020 (6/2971) 0 * * Os_TE_429307 Chr3 8589602 8589601 - F569 228 0.0007 (2/2978) 0 * * Os_TE_429285 Chr3 8579196 8579197 + TELIA 141 0.0003 (1/2994) 0 * Os_TE_429284 Os_TE_429284 Chr3 8579188 8579187 - TELIA 141 0.0003 (1/2994) 0 * Os_TE_429285 Os_TE_429283 Chr3 8578922 8578923 + COPIA2-LTR_OS 6433 0.0007 (2/2987) 0 * Os_TE_429282 Os_TE_429282 Chr3 8578918 8578917 - COPIA2-LTR_OS 6433 0.0007 (2/2989) 0 * Os_TE_429283 Os_TE_429272 Chr3 8577785 8577786 + ORSgTETNOOT00908 242 0.0008 (2/2665) 0 * * Os_TE_429262 Chr3 8572867 8572868 - CASLET 354 0.0851 (252/2961) 0 * * Os_TE_429250 Chr3 8568456 8568457 + F118 179 0.0004 (1/2694) 0 * * Os_TE_429200 Chr3 8549686 8549687 - SC-3_LTR 5748 0.0010 (3/2983) 0 * Os_TE_429199 Os_TE_429199 Chr3 8549682 8549681 + ORSiTERTOOT00296 5553 0.0010 (3/2979) 0 * Os_TE_429200 Os_TE_429187 Chr3 8544901 8544902 + INDITTO 263 0.0007 (2/2968) 0 * Os_TE_429186 Os_TE_429186 Chr3 8544899 8544898 - INDITTO 263 0.0007 (2/2972) 0 * Os_TE_429187 Os_TE_429175 Chr3 8538648 8538649 - ORSgTETNOOT01607 258 0.0007 (2/2992) 0 * Os_TE_429174 Os_TE_429174 Chr3 8538647 8538646 + STOWAWAY17_OS 259 0.0007 (2/2980) 0 * Os_TE_429175 Os_TE_429166 Chr3 8537313 8537312 - TYPEU 362 0.0003 (1/2895) 0 * * Os_TE_429165 Chr3 8537298 8537299 - ORSgTEMT03000049 380 0.6322 (1435/2270) 0 * Os_TE_429164 Os_TE_429164 Chr3 8537291 8537290 - TYPEU 362 0.7209 (2097/2909) 0 * Os_TE_429165 Os_TE_429146 Chr3 8528691 8515803 + RETRO2_LTR 12874 0.0486 (144/2964) 1 Intact Os_TE_429137 Os_TE_429137 Chr3 8514983 8528691 - RETRO2_LTR 12874 0.0490 (145/2957) 1 Intact Os_TE_429146 Os_TE_429135 Chr3 8514612 8514613 + RIREX_LTR 8828 0.0013 (4/2985) 0 * Os_TE_429134 Os_TE_429134 Chr3 8514608 8514607 - RIREX_LTR 8828 0.0013 (4/2987) 0 * Os_TE_429135 Os_TE_429113 Chr3 8507680 8507425 - ORSgTETNOOT00303 256 0.2901 (855/2947) 1 Intact Os_TE_429112 Os_TE_429112 Chr3 8507424 8507686 + INDITTO 263 0.2974 (886/2979) 1 Intact Os_TE_429113 Os_TE_429109 Chr3 8506861 8506862 + OSTE15 1168 0.0013 (4/2994) 0 * * Os_TE_429108 Chr3 8506692 8506693 + ORSgTETNOOT01668 244 0.0013 (4/2995) 0 * * Os_TE_429065 Chr3 8486955 8486956 + RIREX_LTR 8828 0.0007 (2/2992) 0 * Os_TE_429064 Os_TE_429064 Chr3 8486951 8486950 - RIREX_LTR 8828 0.0007 (2/2987) 0 * Os_TE_429065 Os_TE_429055 Chr3 8485546 8485547 - NDNA1TNA_OS 334 0.0023 (7/2980) 0 * Os_TE_429054 Os_TE_429054 Chr3 8485544 8485543 + NDNA1TNA_OS 334 0.0023 (7/2980) 0 * Os_TE_429055 Os_TE_429029 Chr3 8465672 8463404 - CACTA-Q 2268 0.0443 (130/2936) 1 Intact * Os_TE_429026 Chr3 8463301 8463302 - SZ-35LTR 3853 0.0026 (7/2651) 0 * * Os_TE_429016 Chr3 8459433 8459434 + MPING 430 0.0003 (1/2996) 0 * Os_TE_429015 Os_TE_429015 Chr3 8459431 8459430 - MPING 430 0.0003 (1/2998) 0 * Os_TE_429016 Os_TE_429013 Chr3 8457803 8457804 + MPING 430 0.0030 (9/2993) 0 * Os_TE_429012 Os_TE_429012 Chr3 8457801 8457800 - MPING 430 0.0030 (9/2991) 0 * Os_TE_429013 Os_TE_429011 Chr3 8455791 8456529 + JOUZHEN 596 0.0459 (135/2940) 1 Intact * Os_TE_428977 Chr3 8447362 8447363 - SZ-35LTR 3853 0.0865 (258/2981) 0 * Os_TE_428976 Os_TE_428976 Chr3 8447358 8447357 + RETROSAT4_LTR 13504 0.0780 (231/2963) 0 * Os_TE_428977 Os_TE_428966 Chr3 8443144 8442222 + OSTE9 421 0.0455 (136/2990) 1 Intact * Os_TE_428961 Chr3 8440318 8440319 - SC-3_LTR 5748 0.0007 (2/2981) 0 * Os_TE_428960 Os_TE_428960 Chr3 8440314 8440313 + ORSiTERTOOT00296 5553 0.0007 (2/2982) 0 * Os_TE_428961 Os_TE_428957 Chr3 8437046 8437047 - AMYLTP 383 0.1097 (328/2991) 0 * Os_TE_428956 Os_TE_428956 Chr3 8437038 8437037 + ORSgTEMT00800035 370 0.1050 (313/2980) 0 * Os_TE_428957 Os_TE_428944 Chr3 8425594 8425593 - TYPEM 227 0.0020 (6/2988) 0 * Os_TE_428943 Os_TE_428943 Chr3 8425593 8425594 - ORSgTEMT02400246 177 0.0020 (6/2982) 0 * Os_TE_428944 Os_TE_428930 Chr3 8420579 8424895 - SZ-48LTR 3632 0.0396 (117/2951) 1 Intact * Os_TE_428921 Chr3 8414738 8414739 + OSTE33 1012 0.8722 (2545/2918) 0 * Os_TE_428920 Os_TE_428920 Chr3 8414729 8414728 + OSTE33 1012 0.8789 (2621/2982) 0 * Os_TE_428921 Os_TE_428913 Chr3 8413625 8413626 + ORSgTETNOOT01998 254 0.3703 (1085/2930) 0 * Os_TE_428912 Os_TE_428912 Chr3 8413624 8413623 - ORSgTETNOOT00754 253 0.1584 (353/2229) 0 * Os_TE_428913 Os_TE_428909 Chr3 8412462 8412463 + OLO24 345 0.0003 (1/2994) 0 * Os_TE_428908 Os_TE_428908 Chr3 8412460 8412459 - OLO24 345 0.0003 (1/2995) 0 * Os_TE_428909 Os_TE_428888 Chr3 8396840 8396839 - RIRE2_LTR 11306 0.0003 (1/2996) 0 * * Os_TE_428876 Chr3 8394967 8394968 - ORSgTERT00201216 11284 0.0017 (5/2919) 0 * Os_TE_428875 Os_TE_428875 Chr3 8394963 8394962 - RIRE2_LTR 11306 0.0017 (5/2929) 0 * Os_TE_428876 Os_TE_428868 Chr3 8390625 8390624 + CACTA-B 1103 0.5181 (1545/2982) 0 * Os_TE_428867 Os_TE_428867 Chr3 8390624 8390625 - ORSgTETN00200001 10994 0.5125 (1521/2968) 0 * Os_TE_428868 Os_TE_428837 Chr3 8378174 8378173 - TRUNCATOR 2918 0.0020 (6/2976) 0 * Os_TE_428836 Os_TE_428836 Chr3 8378173 8378174 + TRUNCATOR 2918 0.0020 (6/2962) 0 * Os_TE_428837 Os_TE_428835 Chr3 8377207 8377208 + TNR2A 152 0.0839 (251/2992) 0 * Os_TE_428834 Os_TE_428834 Chr3 8377191 8377190 - TNR2A 152 0.0878 (263/2994) 0 * Os_TE_428835 Os_TE_428833 Chr3 8377082 8377083 + RETROSAT4_LTR 13504 0.0013 (4/2990) 0 * Os_TE_428832 Os_TE_428832 Chr3 8377078 8377077 - RETROSAT4_LTR 13504 0.0017 (5/2991) 0 * Os_TE_428833 Os_TE_428830 Chr3 8376301 8376302 + RIREX_LTR 8828 0.0017 (5/2966) 0 * * Os_TE_428827 Chr3 8375087 8375086 - ORSgTEMT03000017 382 0.2528 (757/2995) 0 * * Os_TE_428823 Chr3 8373841 8373840 - ORSgTEMT02400246 177 0.5224 (1540/2948) 0 * Os_TE_428822 Os_TE_428822 Chr3 8373836 8373837 + ORSgTEMT02400034 225 0.5244 (1538/2933) 0 * Os_TE_428823 Os_TE_428818 Chr3 8372915 8372916 - COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_428817 Os_TE_428817 Chr3 8372911 8372910 + COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_428818 Os_TE_428796 Chr3 8365220 8365080 + TELIA 141 0.1327 (116/874) 1 Intact Os_TE_428795 Os_TE_428795 Chr3 8365080 8365220 - TELIA 141 0.1295 (115/888) 1 Intact Os_TE_428796 Os_TE_428792 Chr3 8364810 8364809 + ORSiTERTOOT00034 791 0.0011 (1/896) 0 * * Os_TE_428770 Chr3 8357710 8357709 + ORSgTEMT01601591 242 0.0057 (17/2965) 0 * Os_TE_428769 Os_TE_428769 Chr3 8357704 8357705 + STOWAWAY51_OS 246 0.0077 (23/2977) 0 * Os_TE_428770 Os_TE_428767 Chr3 8356752 8356753 - ORSgTERT00201216 11284 0.0017 (5/2983) 0 * * Os_TE_428766 Chr3 8356175 8356176 - OSTONOR1_LTR 6440 0.0003 (1/2998) 0 * Os_TE_428765 Os_TE_428765 Chr3 8356171 8356170 + OSTONOR1_LTR 6440 0.0003 (1/2998) 0 * Os_TE_428766 Os_TE_428758 Chr3 8350163 8350164 + OSTE33 1012 0.6250 (1845/2952) 0 * * Os_TE_428744 Chr3 8344816 8344817 + RIREX_LTR 8828 0.0144 (43/2984) 0 * Os_TE_428743 Os_TE_428743 Chr3 8344812 8344811 - RIREX_LTR 8828 0.0144 (43/2988) 0 * Os_TE_428744 Os_TE_428740 Chr3 8336656 8336657 + COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_428739 Os_TE_428739 Chr3 8336652 8336651 - COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_428740 Os_TE_428736 Chr3 8335040 8334687 - CASLET 354 0.0388 (116/2990) 1 Intact Os_TE_428734 Os_TE_428734 Chr3 8334687 8335040 + CASLET 354 0.0511 (126/2464) 1 Intact Os_TE_428736 Os_TE_428733 Chr3 8334659 8334219 + RIREX_LTR 8828 0.0477 (124/2600) 1 Solo_LTR Os_TE_428732 Os_TE_428732 Chr3 8334219 8334659 - RIREX_LTR 8828 0.0394 (118/2994) 1 Solo_LTR Os_TE_428733 Os_TE_428727 Chr3 8330635 8330636 + COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_428726 Os_TE_428726 Chr3 8330631 8330630 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_428727 Os_TE_428716 Chr3 8324253 8324254 - COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_428715 Os_TE_428715 Chr3 8324249 8324248 + COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * Os_TE_428716 Os_TE_428711 Chr3 8322306 8322307 + RETROSAT4_LTR 13504 0.0979 (262/2676) 0 * Os_TE_428710 Os_TE_428710 Chr3 8322302 8322301 - SZ-35LTR 3853 0.2007 (597/2975) 0 * Os_TE_428711 Os_TE_428709 Chr3 8321122 8321123 + NDNA1TNA_OS 334 0.0972 (255/2624) 0 * Os_TE_428708 Os_TE_428708 Chr3 8321120 8321119 - NDNA1TNA_OS 334 0.1028 (271/2635) 0 * Os_TE_428709 Os_TE_428702 Chr3 8320045 8320046 + RETROSAT4_LTR 13504 0.3971 (567/1428) 0 * * Os_TE_428685 Chr3 8311853 8311854 + CRATA 4786 0.5081 (1451/2856) 0 * Os_TE_428684 Os_TE_428684 Chr3 8311846 8311845 - CRATA 4786 0.5332 (1583/2969) 0 * Os_TE_428685 Os_TE_428659 Chr3 8300075 8300076 - OSR3_LTR 5201 0.0003 (1/2986) 0 * * Os_TE_428650 Chr3 8294164 8294163 - COPI2_LTR 4733 0.0003 (1/2971) 0 * * Os_TE_428600 Chr3 8253979 8253978 + HELITRON2_OS 15167 0.2503 (738/2949) 0 * Os_TE_428599 Os_TE_428599 Chr3 8253978 8253979 - HELITRON2_OS 15167 0.2537 (753/2968) 0 * Os_TE_428600 Os_TE_428592 Chr3 8246081 8246080 + RETROSAT4_LTR 13504 0.1626 (461/2836) 0 * * Os_TE_428590 Chr3 8244966 8244967 - RIREX_LTR 8828 0.1340 (362/2701) 0 * * Os_TE_428576 Chr3 8243757 8243756 - OSLINE1-2 7128 0.0003 (1/2989) 0 * * Os_TE_428575 Chr3 8242804 8242803 + ORSgTEMT01601591 242 0.0023 (7/2993) 0 * Os_TE_428574 Os_TE_428574 Chr3 8242798 8242799 + STOWAWAY51_OS 246 0.0023 (7/2994) 0 * Os_TE_428575 Os_TE_428573 Chr3 8241546 8241547 - ORSgTEMT01600650 234 0.2457 (732/2979) 0 * Os_TE_428572 Os_TE_428572 Chr3 8241543 8241542 + ORSgTEMT01602181 239 0.2529 (757/2993) 0 * Os_TE_428573 Os_TE_428571 Chr3 8241540 8241541 - ORSgTEMT01601432 239 0.2456 (731/2976) 0 * * Os_TE_428570 Chr3 8239902 8239903 - SZ-35LTR 3853 0.1180 (335/2839) 0 * * Os_TE_428544 Chr3 8235326 8235325 + ORSgTEMT00700017 386 0.0020 (6/2936) 0 * * Os_TE_428536 Chr3 8232945 8228689 - SZ-48LTR 3632 0.0402 (120/2983) 1 Intact * Os_TE_428515 Chr3 8222400 8222401 + ORSgTETNOOT00908 242 0.0020 (6/2999) 0 * * Os_TE_428499 Chr3 8212106 8212342 + ORSgTETNOOT00908 242 0.8989 (2685/2987) 1 Intact * Os_TE_428498 Chr3 8211884 8211883 + TWIFB1 3737 0.0003 (1/2989) 0 * * Os_TE_428477 Chr3 8202834 8202835 - TWIFB1 3737 0.0899 (248/2758) 0 * Os_TE_428476 Os_TE_428476 Chr3 8202827 8202826 + TWIFB1 3737 0.0962 (270/2806) 0 * Os_TE_428477 Os_TE_428416 Chr3 8177500 8177254 + STOWAWAY51_OS 246 0.4099 (389/949) 1 Intact * Os_TE_428413 Chr3 8175045 8175044 - ORSgTEMT02400179 221 0.0913 (261/2858) 0 * Os_TE_428412 Os_TE_428412 Chr3 8175043 8175044 - ORSgTEMT02400064 212 0.0850 (244/2869) 0 * Os_TE_428413 Os_TE_428402 Chr3 8165809 8165810 + SC-8_LTR 4951 0.0003 (1/2996) 0 * Os_TE_428401 Os_TE_428401 Chr3 8165805 8165804 - SC-8_LTR 4951 0.0003 (1/2998) 0 * Os_TE_428402 Os_TE_428363 Chr3 8156793 8156792 - ORSgTEMT00700002 381 0.0010 (3/2985) 0 * Os_TE_428362 Os_TE_428362 Chr3 8156786 8156787 + ORSgTEMT00700017 386 0.0010 (3/2981) 0 * Os_TE_428363 Os_TE_428359 Chr3 8154905 8154904 + ORSgTEMT01601591 242 0.0007 (2/2696) 0 * * Os_TE_428346 Chr3 8150179 8150178 + RETRO2_LTR 12874 0.1068 (318/2978) 0 * * Os_TE_428337 Chr3 8146182 8140737 - RETRO2_LTR 12874 0.1840 (539/2930) 1 Intact * Os_TE_428318 Chr3 8135738 8135737 + ORSgTETNOOT00908 242 0.0873 (261/2988) 0 * * Os_TE_428314 Chr3 8131322 8131323 - OLO24 345 0.0202 (55/2729) 0 * Os_TE_428313 Os_TE_428313 Chr3 8131320 8131319 + OLO24 345 0.0185 (54/2914) 0 * Os_TE_428314 Os_TE_428312 Chr3 8131206 8131207 + STOWAWAY44_OS 240 0.0003 (1/2964) 0 * * Os_TE_428301 Chr3 8128192 8128191 - RETROSAT4_LTR 13504 0.0022 (6/2784) 0 * * Os_TE_428267 Chr3 8113166 8113034 + GYPSY-A_LTR 8951 0.1819 (544/2990) 1 Intact * Os_TE_428262 Chr3 8110132 8110133 - INDITTO 263 0.0030 (9/2986) 0 * * Os_TE_428260 Chr3 8110002 8110003 - INDITTO 263 0.1094 (327/2988) 0 * * Os_TE_428250 Chr3 8105208 8105209 - AMYLTP 383 0.0073 (22/2997) 0 * Os_TE_428249 Os_TE_428249 Chr3 8105200 8105199 + AMYLTP 383 0.0077 (23/2997) 0 * Os_TE_428250 Os_TE_428237 Chr3 8100772 8100773 - SC-8_LTR 4951 0.0017 (5/2994) 0 * * Os_TE_428194 Chr3 8079173 8079174 - RIRE3A_LTR 10580 0.0010 (3/2994) 0 * * Os_TE_428181 Chr3 8070412 8070413 + ORSiTERTOOT00296 5553 0.0007 (2/2995) 0 * Os_TE_428180 Os_TE_428180 Chr3 8070408 8070407 - SC-3_LTR 5748 0.0007 (2/2995) 0 * Os_TE_428181 Os_TE_428166 Chr3 8063891 8063890 - RETROSAT4_LTR 13504 0.0044 (13/2946) 0 * * Os_TE_428158 Chr3 8059345 8059346 - INDITTO 263 0.5626 (1677/2981) 0 * Os_TE_428157 Os_TE_428157 Chr3 8059343 8059342 - ORSgTETNOOT00053 263 0.5605 (1677/2992) 0 * Os_TE_428158 Os_TE_428133 Chr3 8042000 8042001 - SC-8_LTR 4951 0.0003 (1/2995) 0 * Os_TE_428132 Os_TE_428132 Chr3 8041996 8041995 + SC-8_LTR 4951 0.0003 (1/2993) 0 * Os_TE_428133 Os_TE_428130 Chr3 8040170 8040171 - SZ-55_LTR 10318 0.0017 (5/2985) 0 * Os_TE_428129 Os_TE_428129 Chr3 8040166 8040165 + SZ-55_LTR 10318 0.0017 (5/2986) 0 * Os_TE_428130 Os_TE_428128 Chr3 8039497 8039496 - STOWAWAY51_OS 246 0.0003 (1/2989) 0 * Os_TE_428127 Os_TE_428127 Chr3 8039491 8039492 + STOWAWAY51_OS 246 0.0003 (1/2986) 0 * Os_TE_428128 Os_TE_428100 Chr3 8017482 8017483 + ORSiCMCM00100019 2717 0.0586 (61/1041) 0 * Os_TE_428099 Os_TE_428099 Chr3 8017478 8017477 - TRUNCATOR2_LTR 2904 0.6752 (1929/2857) 0 * Os_TE_428100 Os_TE_428090 Chr3 8016290 8016581 - STOWAWAY11_OS 292 0.8406 (949/1129) 1 Intact * Os_TE_428068 Chr3 8009584 8009585 - ORSgTETN00200001 10994 0.6736 (1983/2944) 0 * Os_TE_428067 Os_TE_428067 Chr3 8009582 8009581 + SPMLIKE 10989 0.6819 (2028/2974) 0 * Os_TE_428068 Os_TE_428040 Chr3 7998084 7998085 - OLO24 345 0.0003 (1/2893) 0 * Os_TE_428039 Os_TE_428039 Chr3 7998082 7998081 + OLO24 345 0.0003 (1/2895) 0 * Os_TE_428040 Os_TE_428011 Chr3 7978337 7978338 + SZ-55_LTR 10318 0.0003 (1/2994) 0 * Os_TE_428010 Os_TE_428010 Chr3 7978333 7978332 - SZ-55_LTR 10318 0.0003 (1/2994) 0 * Os_TE_428011 Os_TE_428005 Chr3 7976459 7976460 - COPI2_LTR 4733 0.0023 (7/2993) 0 * Os_TE_428004 Os_TE_428004 Chr3 7976455 7976454 + COPI2_LTR 4733 0.0020 (6/2996) 0 * Os_TE_428005 Os_TE_428000 Chr3 7974488 7974487 - TNR3 1536 0.0010 (3/2945) 0 * * Os_TE_427987 Chr3 7967332 7967333 + MPING 430 0.0067 (20/2972) 0 * Os_TE_427986 Os_TE_427986 Chr3 7967330 7967329 - MPING 430 0.0074 (22/2972) 0 * Os_TE_427987 Os_TE_427976 Chr3 7963190 7963191 + COPIA2-LTR_OS 6433 0.0010 (3/2992) 0 * * Os_TE_427957 Chr3 7955004 7955005 + ORSgTETNOOT01834 251 0.2037 (610/2994) 0 * Os_TE_427956 Os_TE_427956 Chr3 7955002 7955001 - ORSgTETNOOT00754 253 0.2003 (599/2991) 0 * Os_TE_427957 Os_TE_427946 Chr3 7953082 7953083 - STOWAWAY51_OS 246 0.0007 (2/2991) 0 * * Os_TE_427910 Chr3 7937709 7938731 + CACTA-B 1103 0.3201 (954/2980) 0.89 Intact * Os_TE_427907 Chr3 7937153 7937154 - MPING 430 0.0007 (2/2998) 0 * Os_TE_427906 Os_TE_427906 Chr3 7937151 7937150 + MPING 430 0.0007 (2/2998) 0 * Os_TE_427907 Os_TE_427895 Chr3 7934032 7934033 - MPING 430 0.0070 (21/2987) 0 * Os_TE_427894 Os_TE_427894 Chr3 7934030 7934029 + MPING 430 0.0074 (22/2991) 0 * Os_TE_427895 Os_TE_427884 Chr3 7930123 7930124 - ORSgTERT00100227 3525 0.7576 (2266/2991) 0 * * Os_TE_427882 Chr3 7928595 7924707 + JOUZHEN 596 0.2552 (757/2966) 1 Intact Os_TE_427881 Os_TE_427881 Chr3 7924707 7928595 - JOUZHEN 596 0.2506 (744/2969) 1 Intact Os_TE_427882 Os_TE_427855 Chr3 7908806 7908805 - DS-RICE2N 613 0.7543 (2226/2951) 0 * * Os_TE_427823 Chr3 7899242 7899243 + STOWAWAY51_OS 246 0.0003 (1/2867) 0 * * Os_TE_427794 Chr3 7887537 7887538 + OLO24 345 0.0013 (4/2989) 0 * Os_TE_427793 Os_TE_427793 Chr3 7887535 7887534 - OLO24 345 0.0013 (4/2994) 0 * Os_TE_427794 Os_TE_427777 Chr3 7879919 7879920 + ORSgTEMT00500476 150 0.7848 (2345/2988) 0 * * Os_TE_427754 Chr3 7870633 7870634 - MPING 430 0.0003 (1/2957) 0 * * Os_TE_427752 Chr3 7870504 7870505 - RIREX_LTR 8828 0.0003 (1/2987) 0 * * Os_TE_427750 Chr3 7870240 7870239 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * * Os_TE_427723 Chr3 7856210 7856211 - SZ-25LTR 330 0.0013 (4/2982) 0 * Os_TE_427722 Os_TE_427722 Chr3 7856206 7856205 + COPI1_LTR 4721 0.0017 (5/2982) 0 * Os_TE_427723 Os_TE_427712 Chr3 7852667 7852668 + MPING 430 0.0007 (2/2992) 0 * Os_TE_427711 Os_TE_427711 Chr3 7852665 7852664 - MPING 430 0.0007 (2/2995) 0 * Os_TE_427712 Os_TE_427694 Chr3 7845048 7845049 - COPIA2-LTR_OS 6433 0.0007 (2/2988) 0 * Os_TE_427693 Os_TE_427693 Chr3 7845044 7845043 + COPIA2-LTR_OS 6433 0.0007 (2/2995) 0 * Os_TE_427694 Os_TE_427692 Chr3 7844873 7844874 - COPIA2-LTR_OS 6433 0.0007 (2/2985) 0 * Os_TE_427691 Os_TE_427691 Chr3 7844869 7844868 + COPIA2-LTR_OS 6433 0.0007 (2/2992) 0 * Os_TE_427692 Os_TE_427690 Chr3 7844800 7844801 - HATOS1 3488 0.1182 (352/2978) 0 * Os_TE_427689 Os_TE_427689 Chr3 7844793 7844792 + QINNIU 528 0.1191 (355/2980) 0 * Os_TE_427690 Os_TE_427684 Chr3 7844289 7844290 + RIREX_LTR 8828 0.0034 (10/2973) 0 * * Os_TE_427677 Chr3 7841657 7841658 + SZ-9LTR 965 0.1196 (357/2984) 0 * Os_TE_427676 Os_TE_427676 Chr3 7841653 7841652 - SZ-9LTR 965 0.1207 (361/2992) 0 * Os_TE_427677 Os_TE_427661 Chr3 7832976 7832975 - SC-4_LTR 5218 0.0003 (1/2885) 0 * * Os_TE_427657 Chr3 7831274 7831275 + OSTE33 1012 0.0483 (35/725) 0 * Os_TE_427656 Os_TE_427656 Chr3 7831265 7831264 + OSTE33 1012 0.0661 (48/726) 0 * Os_TE_427657 Os_TE_427641 Chr3 7824384 7824385 + ORSiTERTOOT00296 5553 0.0003 (1/2973) 0 * Os_TE_427640 Os_TE_427640 Chr3 7824380 7824379 - SC-3_LTR 5748 0.0003 (1/2977) 0 * Os_TE_427641 Os_TE_427636 Chr3 7819522 7819523 + STOWAWAY51_OS 246 0.0160 (48/2996) 0 * * Os_TE_427635 Chr3 7818536 7818537 - NDNA2TNA_OS 346 0.0160 (48/2997) 0 * * Os_TE_427634 Chr3 7816442 7816441 - ORSgTEMT02400246 177 0.7672 (2287/2981) 0 * Os_TE_427633 Os_TE_427633 Chr3 7816441 7816442 - TYPEM 227 0.7663 (2289/2987) 0 * Os_TE_427634 Os_TE_427630 Chr3 7815041 7815042 - ORSiTETNOOT00134 607 0.0003 (1/2966) 0 * * Os_TE_427604 Chr3 7801593 7801592 - TRUNCATOR 2918 0.1018 (304/2987) 0 * Os_TE_427603 Os_TE_427603 Chr3 7801591 7801592 + TRUNCATOR 2918 0.1047 (314/2998) 0 * Os_TE_427604 Os_TE_427555 Chr3 7782044 7782045 + MPING 430 0.0003 (1/2976) 0 * Os_TE_427554 Os_TE_427554 Chr3 7782042 7782041 - MPING 430 0.0003 (1/2958) 0 * Os_TE_427555 Os_TE_427544 Chr3 7778303 7778302 - SC-3_LTR 5748 0.0040 (12/2989) 0 * * Os_TE_427543 Chr3 7777538 7777539 + SC-8_LTR 4951 0.0003 (1/2990) 0 * Os_TE_427542 Os_TE_427542 Chr3 7777534 7777533 - SC-8_LTR 4951 0.0003 (1/2990) 0 * Os_TE_427543 Os_TE_427534 Chr3 7772047 7772046 - ORSgTEMT00101341 314 0.7833 (2256/2880) 0 * Os_TE_427533 Os_TE_427533 Chr3 7772043 7772044 - NDNA2TNA_OS 346 0.7935 (2363/2978) 0 * Os_TE_427534 Os_TE_427527 Chr3 7769253 7769254 - COPIA2-LTR_OS 6433 0.0007 (2/2995) 0 * Os_TE_427526 Os_TE_427526 Chr3 7769249 7769248 + COPIA2-LTR_OS 6433 0.0007 (2/2991) 0 * Os_TE_427527 Os_TE_427515 Chr3 7765630 7765631 - CACTA-I 1124 0.0003 (1/2972) 0 * * Os_TE_427460 Chr3 7739009 7739010 - MPING 430 0.0153 (46/2997) 0 * Os_TE_427459 Os_TE_427459 Chr3 7739007 7739006 + MPING 430 0.0153 (46/2999) 0 * Os_TE_427460 Os_TE_427453 Chr3 7737986 7737985 - STOWAWAY51_OS 246 0.0010 (3/2980) 0 * * Os_TE_427450 Chr3 7737319 7737320 + NDNA1TNA_OS 334 0.0150 (45/2996) 0 * Os_TE_427449 Os_TE_427449 Chr3 7737316 7737315 - NDNA1TNA_OS 334 0.0143 (43/2997) 0 * Os_TE_427450 Os_TE_427448 Chr3 7735385 7735386 - COPI2_LTR 4733 0.0007 (2/2988) 0 * Os_TE_427447 Os_TE_427447 Chr3 7735381 7735380 + COPI2_LTR 4733 0.0007 (2/2989) 0 * Os_TE_427448 Os_TE_427417 Chr3 7725694 7725693 - STOWAWAY51_OS 246 0.0007 (2/2993) 0 * * Os_TE_427394 Chr3 7716253 7716254 - RIRE2_LTR 11306 0.0966 (289/2993) 0 * Os_TE_427393 Os_TE_427393 Chr3 7716249 7716248 + RIRE2_LTR 11306 0.1001 (300/2996) 0 * Os_TE_427394 Os_TE_427374 Chr3 7711546 7711545 + OSTE33 1012 0.0318 (95/2984) 0 * * Os_TE_427370 Chr3 7709217 7709218 - COPI2_LTR 4733 0.0003 (1/2990) 0 * Os_TE_427369 Os_TE_427369 Chr3 7709213 7709212 + COPI2_LTR 4733 0.0003 (1/2991) 0 * Os_TE_427370 Os_TE_427362 Chr3 7705248 7705249 + OSR42_LTR 5605 0.0140 (42/2994) 0 * Os_TE_427361 Os_TE_427361 Chr3 7705244 7705243 - OSR42_LTR 5605 0.0148 (44/2980) 0 * Os_TE_427362 Os_TE_427345 Chr3 7691682 7691681 - NDNA1TNA_OS 334 0.0171 (43/2514) 0 * * Os_TE_427340 Chr3 7691125 7691126 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_427339 Os_TE_427339 Chr3 7691121 7691120 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_427340 Os_TE_427335 Chr3 7688913 7688914 + MPING 430 0.0010 (3/2997) 0 * Os_TE_427334 Os_TE_427334 Chr3 7688911 7688910 - MPING 430 0.0010 (3/2994) 0 * Os_TE_427335 Os_TE_427297 Chr3 7666864 7666865 + NDNA1TNA_OS 334 0.0004 (1/2556) 0 * Os_TE_427296 Os_TE_427296 Chr3 7666862 7666861 - NDNA1TNA_OS 334 0.0008 (2/2527) 0 * Os_TE_427297 Os_TE_427284 Chr3 7661563 7661564 + SZ-55_LTR 10318 0.0013 (1/778) 0 * Os_TE_427283 Os_TE_427283 Chr3 7661559 7661558 - SZ-55_LTR 10318 0.0003 (1/2989) 0 * Os_TE_427284 Os_TE_427274 Chr3 7659998 7659997 - ORSiTETNOOT00134 607 0.0030 (9/2991) 0 * * Os_TE_427266 Chr3 7659221 7659222 + ORSiTERTOOT00332 5395 0.0003 (1/2988) 0 * Os_TE_427265 Os_TE_427265 Chr3 7659217 7659216 - ORSiTERTOOT00332 5395 0.0003 (1/2988) 0 * Os_TE_427266 Os_TE_427263 Chr3 7654576 7654575 + SC-1_LTR 6888 0.0974 (292/2997) 0 * * Os_TE_427242 Chr3 7644278 7644279 + COPIA2-LTR_OS 6433 0.0014 (4/2913) 0 * * Os_TE_427217 Chr3 7630954 7630953 - RETROSAT5_LTR 13878 0.0147 (44/2993) 0 * * Os_TE_427213 Chr3 7629344 7629345 + STOWAWAY51_OS 246 0.0007 (2/2966) 0 * * Os_TE_427206 Chr3 7626424 7626425 - MPING 430 0.0003 (1/2968) 0 * Os_TE_427205 Os_TE_427205 Chr3 7626422 7626421 + MPING 430 0.0003 (1/2970) 0 * Os_TE_427206 Os_TE_427204 Chr3 7626332 7626331 - STOWAWAY51_OS 246 0.0003 (1/2971) 0 * Os_TE_427203 Os_TE_427203 Chr3 7626326 7626327 + STOWAWAY51_OS 246 0.0003 (1/2972) 0 * Os_TE_427204 Os_TE_427194 Chr3 7621159 7621160 + RETRO1_LTR 8314 0.0154 (46/2981) 0 * Os_TE_427193 Os_TE_427193 Chr3 7621155 7621154 - RETRO2A_LTR 12895 0.0152 (45/2968) 0 * Os_TE_427194 Os_TE_427176 Chr3 7612850 7612851 + MPING 430 0.0003 (1/2972) 0 * * Os_TE_427174 Chr3 7610557 7610556 + STOWAWAY51_OS 246 0.0007 (2/2998) 0 * Os_TE_427173 Os_TE_427173 Chr3 7610551 7610552 + ORSgTEMT01601591 242 0.0003 (1/2998) 0 * Os_TE_427174 Os_TE_427159 Chr3 7595464 7595465 + ORSgTEMT00501786 149 0.0020 (6/2985) 0 * * Os_TE_427158 Chr3 7591481 7591480 + CLOUD-3 550 0.0020 (6/2991) 0 * * Os_TE_427153 Chr3 7590656 7590657 + RIREX_LTR 8828 0.0013 (4/2980) 0 * Os_TE_427152 Os_TE_427152 Chr3 7590652 7590651 - RIREX_LTR 8828 0.0013 (4/2967) 0 * Os_TE_427153 Os_TE_427143 Chr3 7585491 7585492 - RETRO1_LTR 8314 0.0154 (46/2990) 0 * Os_TE_427142 Os_TE_427142 Chr3 7585487 7585486 + RETRO2A_LTR 12895 0.0151 (45/2990) 0 * Os_TE_427143 Os_TE_427126 Chr3 7570158 7570157 + STOWAWAY15-2_OS 145 0.7500 (2229/2972) 0 * * Os_TE_427102 Chr3 7565531 7565532 + COPI2_LTR 4733 0.0003 (1/2996) 0 * * Os_TE_427094 Chr3 7559287 7559286 + ORSgTEMT01601591 242 0.0007 (2/2997) 0 * * Os_TE_427090 Chr3 7558622 7558623 - RIREX_LTR 8828 0.0007 (2/2992) 0 * Os_TE_427089 Os_TE_427089 Chr3 7558618 7558617 + RIREX_LTR 8828 0.0007 (2/2968) 0 * Os_TE_427090 Os_TE_427082 Chr3 7557671 7557670 - TRUNCATOR 2918 0.0017 (5/2965) 0 * Os_TE_427081 Os_TE_427081 Chr3 7557670 7557671 + TRUNCATOR 2918 0.0014 (4/2962) 0 * Os_TE_427082 Os_TE_427077 Chr3 7556861 7556862 - ORSgTETNOOT00762 266 0.2860 (854/2986) 0 * * Os_TE_427074 Chr3 7555400 7555401 + TRUNCATOR2_LTR 2904 0.0003 (1/2996) 0 * Os_TE_427073 Os_TE_427073 Chr3 7555396 7555395 - TRUNCATOR2_LTR 2904 0.0003 (1/2997) 0 * Os_TE_427074 Os_TE_427047 Chr3 7530497 7526762 - TWIFB1 3737 0.2440 (711/2914) 1 Intact Os_TE_427046 Os_TE_427046 Chr3 7526762 7530497 + TWIFB1 3737 0.2508 (743/2963) 1 Intact Os_TE_427047 Os_TE_427002 Chr3 7505283 7505284 - RIRE2_LTR 11306 0.0513 (151/2943) 0 * Os_TE_427001 Os_TE_427001 Chr3 7505279 7505278 - ORSgTERT00201216 11284 0.0521 (154/2954) 0 * Os_TE_427002 Os_TE_426998 Chr3 7504623 7504624 + SETARIA2 1142 0.1856 (551/2968) 0 * * Os_TE_426991 Chr3 7499788 7499787 - ORSgTEMT01600223 220 0.0005 (1/2113) -1 * * Os_TE_426982 Chr3 7491265 7490997 - ORSgTEMT06100010 269 0.2730 (814/2982) 1 Intact Os_TE_426980 Os_TE_426980 Chr3 7490997 7491265 + ORSgTEMT06100010 269 0.2767 (803/2902) 1 Intact Os_TE_426982 Os_TE_426975 Chr3 7490651 7490652 + NDNA2TNA_OS 346 0.0020 (6/2965) 0 * Os_TE_426974 Os_TE_426974 Chr3 7490649 7490648 - NDNA2TNA_OS 346 0.0020 (6/2969) 0 * Os_TE_426975 Os_TE_426968 Chr3 7489901 7489900 - STOWAWAY51_OS 246 0.0007 (2/2973) 0 * Os_TE_426967 Os_TE_426967 Chr3 7489895 7489896 + STOWAWAY51_OS 246 0.0010 (3/2972) 0 * Os_TE_426968 Os_TE_426951 Chr3 7476066 7476065 - CASTAWAY 364 0.4378 (1267/2894) 0 * * Os_TE_426930 Chr3 7466551 7466552 + RETROSAT2LTR 12796 0.4825 (1272/2636) 0 * * Os_TE_426924 Chr3 7452996 7452997 + RETRO2A_LTR 12895 0.1383 (414/2993) 0 * Os_TE_426923 Os_TE_426923 Chr3 7452992 7452991 - RETRO1_LTR 8314 0.1348 (403/2990) 0 * Os_TE_426924 Os_TE_426859 Chr3 7407918 7407917 - RETROSAT2LTR 12796 0.0191 (55/2875) 0 * * Os_TE_426855 Chr3 7406745 7406409 - ORSgTEMT00100799 337 0.2601 (776/2984) 1 Intact * Os_TE_426846 Chr3 7404500 7404501 - OSTE24 683 0.0027 (8/2944) 0 * * Os_TE_426797 Chr3 7376535 7376536 + RETROSAT2LTR 12796 0.4833 (1376/2847) 0 * * Os_TE_426765 Chr3 7363670 7363671 + ORSiTERTOOT00296 5553 0.0003 (1/2989) 0 * Os_TE_426764 Os_TE_426764 Chr3 7363666 7363665 - SC-3_LTR 5748 0.0003 (1/2990) 0 * Os_TE_426765 Os_TE_426732 Chr3 7347466 7347467 + TWIF 586 0.0007 (2/2968) 0 * Os_TE_426731 Os_TE_426731 Chr3 7347459 7347458 - ORSiTETNOOT00200 3563 0.0007 (2/2969) 0 * Os_TE_426732 Os_TE_426715 Chr3 7343620 7343621 + NDNA1TNA_OS 334 0.0010 (3/2998) 0 * Os_TE_426714 Os_TE_426714 Chr3 7343618 7343617 - NDNA1TNA_OS 334 0.0010 (3/2999) 0 * Os_TE_426715 Os_TE_426696 Chr3 7335223 7335224 - INDITTO 263 0.0157 (47/2986) 0 * Os_TE_426695 Os_TE_426695 Chr3 7335221 7335220 + INDITTO 263 0.0575 (52/905) 0 * Os_TE_426696 Os_TE_426676 Chr3 7318725 7318726 + STOWAWAY10_OS 259 0.7073 (2100/2969) 0 * * Os_TE_426660 Chr3 7312005 7312006 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_426659 Os_TE_426659 Chr3 7312001 7312000 + COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_426660 Os_TE_426632 Chr3 7297612 7297611 + RETROSAT4_LTR 13504 0.0004 (1/2775) 0 * * Os_TE_426622 Chr3 7288173 7288174 - COPI2_LTR 4733 0.0007 (2/2990) 0 * * Os_TE_426594 Chr3 7271990 7271991 + F569 228 0.0778 (231/2971) 0 * Os_TE_426593 Os_TE_426593 Chr3 7271987 7271986 - F569 228 0.0804 (240/2984) 0 * Os_TE_426594 Os_TE_426551 Chr3 7251190 7251191 - COPI2_LTR 4733 0.0003 (1/2910) 0 * * Os_TE_426523 Chr3 7245699 7245700 + TWIF 586 0.0003 (1/2955) 0 * Os_TE_426522 Os_TE_426522 Chr3 7245692 7245691 - ORSiTETNOOT00134 607 0.0003 (1/2949) 0 * Os_TE_426523 Os_TE_426506 Chr3 7235945 7235944 - ORSgTEMT01601432 239 0.1781 (531/2981) 0 * Os_TE_426505 Os_TE_426505 Chr3 7235942 7235943 + ORSgTEMT01602181 239 0.1794 (534/2976) 0 * Os_TE_426506 Os_TE_426504 Chr3 7234535 7234536 + ORSgTEMT01602181 239 0.6478 (1650/2547) 0 * * Os_TE_426500 Chr3 7230114 7230115 - AMYLTP 383 0.0014 (4/2912) 0 * Os_TE_426499 Os_TE_426499 Chr3 7230106 7230105 + AMYLTP 383 0.0017 (5/2978) 0 * Os_TE_426500 Os_TE_426457 Chr3 7199110 7199111 + TESSBIG 4057 0.7029 (2061/2932) 0 * Os_TE_426456 Os_TE_426456 Chr3 7199103 7199102 - TESSBIG 4057 0.7138 (2137/2994) 0 * Os_TE_426457 Os_TE_426451 Chr3 7195765 7195406 - ORSgTEMT00600304 361 0.2760 (780/2826) 1 Intact * Os_TE_426436 Chr3 7180799 7180798 + ORSiTERTOOT00226 792 0.0010 (3/2982) 0 * * Os_TE_426394 Chr3 7167766 7167765 - STOWAWAY51_OS 246 0.0267 (79/2964) 0 * Os_TE_426393 Os_TE_426393 Chr3 7167760 7167761 + STOWAWAY51_OS 246 0.0267 (79/2958) 0 * Os_TE_426394 Os_TE_426373 Chr3 7151709 7162013 + SZ-55_LTR 10318 0.2963 (874/2950) 1 Intact * Os_TE_426364 Chr3 7151283 7151284 - COPI2_LTR 4733 0.0003 (1/2955) 0 * * Os_TE_426329 Chr3 7132188 7132187 + NDNA1TNA_OS 334 0.0007 (2/2960) 0 * Os_TE_426328 Os_TE_426328 Chr3 7132187 7132188 + ORSgTEMT00100272 356 0.0007 (2/2951) 0 * Os_TE_426329 Os_TE_426284 Chr3 7102055 7102056 + COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_426283 Os_TE_426283 Chr3 7102051 7102050 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_426284 Os_TE_426266 Chr3 7095345 7095346 - COPI2_LTR 4733 0.0003 (1/2971) 0 * Os_TE_426265 Os_TE_426265 Chr3 7095341 7095340 + COPI2_LTR 4733 0.0007 (2/2971) 0 * Os_TE_426266 Os_TE_426242 Chr3 7086803 7086802 + COPI2_LTR 4733 0.0003 (1/2998) 0 * * Os_TE_426194 Chr3 7058530 7058531 + RETROSAT4_LTR 13504 0.0010 (3/2977) 0 * Os_TE_426193 Os_TE_426193 Chr3 7058526 7058525 - RETROSAT4_LTR 13504 0.0007 (2/2980) 0 * Os_TE_426194 Os_TE_426157 Chr3 7038911 7038912 + ORSgTETNOOT02406 265 0.7105 (2106/2964) 0 * Os_TE_426156 Os_TE_426156 Chr3 7038910 7038909 + MPING 430 0.0011 (1/913) 0 * Os_TE_426157 Os_TE_426155 Chr3 7038890 7038891 - INDITTO 263 0.0040 (12/2973) 0 * * Os_TE_426143 Chr3 7034130 7034131 + RIREX_LTR 8828 0.0007 (2/2991) 0 * Os_TE_426142 Os_TE_426142 Chr3 7034126 7034125 - RIRE2_LTR 11306 0.0007 (2/2991) 0 * Os_TE_426143 Os_TE_426139 Chr3 7033929 7033928 - COPI2_LTR 4733 0.0003 (1/2980) 0 * * Os_TE_426133 Chr3 7032015 7032014 - RIREX_LTR 8828 0.0003 (1/2990) 0 * * Os_TE_426129 Chr3 7026280 7026279 + STOWAWAY51_OS 246 0.0003 (1/2998) 0 * * Os_TE_426124 Chr3 7022609 7022608 - SZLTR 1249 0.6496 (1889/2908) 0 * * Os_TE_426120 Chr3 7020627 7020628 - AMYLTP 383 0.0322 (96/2979) 0 * Os_TE_426119 Os_TE_426119 Chr3 7020619 7020618 + AMYLTP 383 0.0318 (95/2985) 0 * Os_TE_426120 Os_TE_426111 Chr3 7017572 7017573 - RETROSAT5_LTR 13878 0.0011 (3/2684) 0 * * Os_TE_426087 Chr3 7007608 7007609 - ORSgTEMT00600304 361 0.0020 (6/2998) 0 * Os_TE_426086 Os_TE_426086 Chr3 7007605 7007604 - CASTAWAY 364 0.0020 (6/2998) 0 * Os_TE_426087 Os_TE_426039 Chr3 6997437 6997438 - ORSiTETNOOT00141 607 0.0003 (1/2996) 0 * Os_TE_426038 Os_TE_426038 Chr3 6997430 6997429 + TWIF 586 0.0003 (1/2996) 0 * Os_TE_426039 Os_TE_426036 Chr3 6997386 6997387 - COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_426035 Os_TE_426035 Chr3 6997382 6997381 + COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_426036 Os_TE_426034 Chr3 6995659 6995660 - MPING 430 0.0003 (1/2997) 0 * Os_TE_426033 Os_TE_426033 Chr3 6995657 6995656 + MPING 430 0.0003 (1/2994) 0 * Os_TE_426034 Os_TE_426032 Chr3 6991136 6991137 + F569 228 0.2253 (675/2996) 0 * Os_TE_426031 Os_TE_426031 Chr3 6991134 6991133 - F569 228 0.2232 (667/2989) 0 * Os_TE_426032 Os_TE_426030 Chr3 6991063 6991064 - COPIA2-LTR_OS 6433 0.0013 (4/2990) 0 * Os_TE_426029 Os_TE_426029 Chr3 6991059 6991058 + COPIA2-LTR_OS 6433 0.0013 (4/2991) 0 * Os_TE_426030 Os_TE_426004 Chr3 6974748 6974747 - STOWAWAY44_OS 240 0.0003 (1/2994) 0 * Os_TE_426003 Os_TE_426003 Chr3 6974745 6974746 + STOWAWAY44_OS 240 0.0003 (1/2996) 0 * Os_TE_426004 Os_TE_425972 Chr3 6965733 6965732 - MPING 430 0.0003 (1/2966) 0 * * Os_TE_425965 Chr3 6963905 6963906 - AMYLTP 383 0.0565 (166/2936) 0 * Os_TE_425964 Os_TE_425964 Chr3 6963897 6963896 + AMYLTP 383 0.0546 (160/2933) 0 * Os_TE_425965 Os_TE_425961 Chr3 6963710 6963711 + MPING 430 0.0003 (1/2985) 0 * Os_TE_425960 Os_TE_425960 Chr3 6963708 6963707 - MPING 430 0.0003 (1/2989) 0 * Os_TE_425961 Os_TE_425958 Chr3 6963213 6963214 - SZ-25LTR 330 0.0010 (3/2961) 0 * Os_TE_425957 Os_TE_425957 Chr3 6963208 6963207 + COPI1_LTR 4721 0.0014 (4/2960) 0 * Os_TE_425958 Os_TE_425934 Chr3 6951755 6951754 + STOWAWAY51_OS 246 0.0020 (6/2960) 0 * Os_TE_425933 Os_TE_425933 Chr3 6951749 6951750 + ORSgTEMT01601591 242 0.0020 (6/2964) 0 * Os_TE_425934 Os_TE_425926 Chr3 6951132 6951133 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_425925 Os_TE_425925 Chr3 6951128 6951127 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_425926 Os_TE_425831 Chr3 6923483 6923484 - NONAME 312 0.0020 (6/2989) 0 * Os_TE_425830 Os_TE_425830 Chr3 6923482 6923481 + NONAME 312 0.0020 (6/2987) 0 * Os_TE_425831 Os_TE_425816 Chr3 6920283 6920284 - RETROSAT4_LTR 13504 0.4827 (1439/2981) 0 * Os_TE_425815 Os_TE_425815 Chr3 6920279 6920278 + RETROSAT4_LTR 13504 0.4203 (1152/2741) 0 * Os_TE_425816 Os_TE_425806 Chr3 6916541 6916542 - INDITTO 263 0.0044 (13/2931) 0 * Os_TE_425805 Os_TE_425805 Chr3 6916539 6916538 + INDITTO 263 0.0044 (13/2952) 0 * Os_TE_425806 Os_TE_425799 Chr3 6915434 6915435 + SEVERIN-2 1952 0.0003 (1/2933) 0 * * Os_TE_425796 Chr3 6914499 6914500 - TYPEM 227 0.0003 (1/2967) 0 * * Os_TE_425794 Chr3 6911904 6911905 + HARB-1_OS 5166 0.0007 (2/2995) 0 * Os_TE_425793 Os_TE_425793 Chr3 6911902 6911901 - HARB-1_OS 5166 0.0007 (2/2992) 0 * Os_TE_425794 Os_TE_425784 Chr3 6906382 6906381 + DS-RICE4N 715 0.0632 (189/2989) 0 * * Os_TE_425756 Chr3 6894492 6894491 - NDNA1TNA_OS 334 0.0003 (1/2912) 0 * * Os_TE_425681 Chr3 6868964 6868965 - SC-8_LTR 4951 0.0003 (1/2970) 0 * Os_TE_425680 Os_TE_425680 Chr3 6868960 6868959 + SC-8_LTR 4951 0.0003 (1/2974) 0 * Os_TE_425681 Os_TE_425677 Chr3 6868325 6868324 - SC-8_LTR 4951 0.0003 (1/2994) 0 * * Os_TE_425673 Chr3 6866783 6866782 - SC-8_LTR 4951 0.0003 (1/2976) 0 * * Os_TE_425667 Chr3 6863140 6863139 - STOWAWAY51_OS 246 0.0023 (7/2999) 0 * * Os_TE_425665 Chr3 6862970 6862971 + TWIF 586 0.0003 (1/2987) 0 * Os_TE_425664 Os_TE_425664 Chr3 6862963 6862962 - ORSiTETNOOT00134 607 0.0003 (1/2986) 0 * Os_TE_425665 Os_TE_425659 Chr3 6858321 6858320 - STOWAWAY51_OS 246 0.0003 (1/2990) 0 * Os_TE_425658 Os_TE_425658 Chr3 6858315 6858316 + STOWAWAY51_OS 246 0.0003 (1/2995) 0 * Os_TE_425659 Os_TE_425657 Chr3 6857448 6857449 + SZ-55_LTR 10318 0.0003 (1/2998) 0 * Os_TE_425656 Os_TE_425656 Chr3 6857444 6857443 - SZ-55_LTR 10318 0.0003 (1/2999) 0 * Os_TE_425657 Os_TE_425632 Chr3 6846341 6846340 + RIREX_LTR 8828 0.0007 (2/2985) 0 * * Os_TE_425623 Chr3 6842957 6842958 - COPI2_LTR 4733 0.0062 (18/2904) 0 * * Os_TE_425619 Chr3 6841383 6841384 - SZ-35LTR 3853 0.0918 (272/2962) 0 * Os_TE_425618 Os_TE_425618 Chr3 6841379 6841378 + RETROSAT4_LTR 13504 0.0841 (247/2938) 0 * Os_TE_425619 Os_TE_425612 Chr3 6840767 6840768 - RIRE3_LTR 12054 0.0004 (1/2690) 0 * * Os_TE_425597 Chr3 6838265 6838266 + ORSgTEMT01601122 212 0.0020 (6/2992) 0 * * Os_TE_425571 Chr3 6825710 6825711 - RETROSAT4_LTR 13504 0.1422 (425/2988) 0 * Os_TE_425570 Os_TE_425570 Chr3 6825706 6825705 + RETROSAT4_LTR 13504 0.1363 (406/2979) 0 * Os_TE_425571 Os_TE_425549 Chr3 6811196 6811197 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_425548 Os_TE_425548 Chr3 6811192 6811191 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_425549 Os_TE_425516 Chr3 6799267 6799266 + ORSgTEMT00600124 361 0.0003 (1/2906) 0 * * Os_TE_425499 Chr3 6795646 6795647 + INDITTO 263 0.1392 (417/2996) 0 * * Os_TE_425497 Chr3 6795324 6795325 + INDITTO 263 0.1384 (415/2999) 0 * Os_TE_425496 Os_TE_425496 Chr3 6795322 6795321 - INDITTO 263 0.1401 (420/2997) 0 * Os_TE_425497 Os_TE_425491 Chr3 6794410 6794409 - STOWAWAY51_OS 246 0.0003 (1/2997) 0 * Os_TE_425490 Os_TE_425490 Chr3 6794407 6794408 - STOWAWAY44_OS 240 0.0003 (1/2997) 0 * Os_TE_425491 Os_TE_425482 Chr3 6790469 6790470 + INDITTO 263 0.0010 (3/2944) 0 * Os_TE_425481 Os_TE_425481 Chr3 6790467 6790466 - INDITTO 263 0.0017 (5/2946) 0 * Os_TE_425482 Os_TE_425480 Chr3 6790403 6790404 - SC-8_LTR 4951 0.0007 (2/2933) 0 * Os_TE_425479 Os_TE_425479 Chr3 6790399 6790398 + SC-8_LTR 4951 0.0007 (2/2931) 0 * Os_TE_425480 Os_TE_425478 Chr3 6790225 6790226 - SC-8_LTR 4951 0.0004 (1/2828) 0 * Os_TE_425477 Os_TE_425477 Chr3 6790221 6790220 + SC-8_LTR 4951 0.0003 (1/2952) 0 * Os_TE_425478 Os_TE_425427 Chr3 6774158 6774159 - ORSiTERTOOT00329 5144 0.0017 (5/2995) 0 * Os_TE_425426 Os_TE_425426 Chr3 6774151 6774150 + ORSiTERTOOT00329 5144 0.0020 (6/2996) 0 * Os_TE_425427 Os_TE_425405 Chr3 6768820 6768821 + ORSgTEMT01701547 160 0.0003 (1/2976) 0 * * Os_TE_425372 Chr3 6753655 6753654 - STOWAWAY1_OS 149 0.7243 (2162/2985) 0 * * Os_TE_425371 Chr3 6753518 6749657 + RETROSAT4_LTR 13504 0.2873 (854/2973) 1 Solo_LTR Os_TE_425366 Os_TE_425366 Chr3 6749657 6753518 - SZ-35LTR 3853 0.2882 (861/2988) 1 Intact Os_TE_425371 Os_TE_425356 Chr3 6739048 6738810 + ORSgTEMT01602181 239 0.2836 (848/2990) 1 Intact Os_TE_425354 Os_TE_425354 Chr3 6738810 6739048 - ORSgTEMT01601432 239 0.2860 (857/2996) 1 Intact Os_TE_425356 Os_TE_425353 Chr3 6738151 6738152 - MPING 430 0.0003 (1/2999) 0 * Os_TE_425352 Os_TE_425352 Chr3 6738149 6738148 + MPING 430 0.0003 (1/2998) 0 * Os_TE_425353 Os_TE_425332 Chr3 6725320 6725321 + ORSiTERTOOT00074 4935 0.0003 (1/2996) 0 * Os_TE_425331 Os_TE_425331 Chr3 6725316 6725315 - ORSiTERTOOT00074 4935 0.0003 (1/2996) 0 * Os_TE_425332 Os_TE_425203 Chr3 6644924 6644925 + RETRO1_LTR 8314 0.0685 (166/2424) 0 * * Os_TE_425197 Chr3 6643206 6643207 - ORSgTEMT01702255 155 0.0024 (7/2907) 0 * * Os_TE_425171 Chr3 6631994 6631993 - ORSgTEMT00400006 152 0.0003 (1/2968) 0 * * Os_TE_425170 Chr3 6631798 6631466 + ORSgTEMT00100531 325 0.2918 (874/2995) 1 Intact Os_TE_425169 Os_TE_425169 Chr3 6631461 6631796 + ORSgTEMT00101341 314 0.2922 (874/2991) 1 Intact Os_TE_425170 Os_TE_425157 Chr3 6620420 6620419 - RETROSAT2LTR 12796 0.0853 (255/2991) 0 * * Os_TE_425156 Chr3 6618619 6618620 - SZ-40LTR 2465 0.0003 (1/2975) 0 * Os_TE_425155 Os_TE_425155 Chr3 6618615 6618614 + SZ-40LTR 2465 0.0003 (1/2978) 0 * Os_TE_425156 Os_TE_425148 Chr3 6617806 6617185 - Cassandra_OS-LTR 764 0.2931 (872/2975) 1 Intact * Os_TE_425142 Chr3 6613244 6617188 - SZ-35LTR 3853 0.2934 (875/2982) 1 Intact * Os_TE_425104 Chr3 6583964 6583965 + ORSiTERTOOT00296 5553 0.0003 (1/2994) 0 * Os_TE_425103 Os_TE_425103 Chr3 6583960 6583959 - SC-3_LTR 5748 0.0003 (1/2994) 0 * Os_TE_425104 Os_TE_425097 Chr3 6581941 6581942 - SC-8_LTR 4951 0.0007 (2/2996) 0 * Os_TE_425096 Os_TE_425096 Chr3 6581937 6581936 + SC-8_LTR 4951 0.0007 (2/2996) 0 * Os_TE_425097 Os_TE_425049 Chr3 6553581 6553582 - RIREX_LTR 8828 0.0003 (1/2988) 0 * Os_TE_425048 Os_TE_425048 Chr3 6553577 6553576 + RIREX_LTR 8828 0.0003 (1/2990) 0 * Os_TE_425049 Os_TE_425047 Chr3 6552780 6552781 - COPI2_LTR 4733 0.0003 (1/2984) 0 * Os_TE_425046 Os_TE_425046 Chr3 6552776 6552775 + COPI2_LTR 4733 0.0003 (1/2987) 0 * Os_TE_425047 Os_TE_425041 Chr3 6550742 6550743 - RETRO2_LTR 12874 0.1378 (409/2967) 0 * Os_TE_425040 Os_TE_425040 Chr3 6550738 6550737 + ORSgTERTOOT00009 12852 0.1412 (420/2975) 0 * Os_TE_425041 Os_TE_425039 Chr3 6550496 6546732 - RETROSAT4_LTR 13504 0.2965 (874/2948) 1 Solo_LTR Os_TE_425034 Os_TE_425034 Chr3 6546732 6550496 + RETROSAT4_LTR 13504 0.2815 (822/2920) 1 Solo_LTR Os_TE_425039 Os_TE_425019 Chr3 6534388 6534389 + COPI2_LTR 4733 0.0003 (1/2987) 0 * Os_TE_425018 Os_TE_425018 Chr3 6534384 6534383 - COPI2_LTR 4733 0.0003 (1/2991) 0 * Os_TE_425019 Os_TE_425017 Chr3 6533648 6532282 - OSTE33 1012 0.2915 (872/2991) 1 Intact Os_TE_425016 Os_TE_425016 Chr3 6532282 6533648 + OSTE33 1012 0.2871 (855/2978) 1 Intact Os_TE_425017 Os_TE_424970 Chr3 6514018 6513589 - MPING 430 0.0110 (33/2994) 1 Intact Os_TE_424969 Os_TE_424969 Chr3 6513589 6514018 + MPING 430 0.0110 (33/2992) 1 Intact Os_TE_424970 Os_TE_424967 Chr3 6512775 6512776 + ORSgTETNOOT01219 231 0.0134 (40/2976) 0 * * Os_TE_424964 Chr3 6512684 6512685 - INDITTO 263 0.0013 (4/2981) 0 * Os_TE_424963 Os_TE_424963 Chr3 6512682 6512681 + INDITTO 263 0.0017 (5/2983) 0 * Os_TE_424964 Os_TE_424962 Chr3 6512490 6512489 + STOWAWAY51_OS 246 0.0124 (37/2974) 0 * Os_TE_424961 Os_TE_424961 Chr3 6512484 6512485 - STOWAWAY51_OS 246 0.0128 (38/2967) 0 * Os_TE_424962 Os_TE_424957 Chr3 6510369 6510370 - ORSgTEMT04200023 393 0.0010 (3/2949) 0 * * Os_TE_424905 Chr3 6490517 6491006 - OSTE20 496 0.2936 (873/2973) 1 Intact * Os_TE_424903 Chr3 6490172 6490171 - SZ-22_LTR 4403 0.0043 (13/2989) 0 * * Os_TE_424897 Chr3 6485298 6485297 - RIREX_LTR 8828 0.0010 (3/2982) 0 * * Os_TE_424893 Chr3 6479595 6479596 + TRSA_OS 353 0.0003 (1/2943) 0 * * Os_TE_424865 Chr3 6465969 6465970 - COPI2_LTR 4733 0.0594 (175/2944) 0 * * Os_TE_424852 Chr3 6452837 6452838 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_424851 Os_TE_424851 Chr3 6452833 6452832 + COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_424852 Os_TE_424837 Chr3 6440812 6440813 - COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_424836 Os_TE_424836 Chr3 6440808 6440807 + COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_424837 Os_TE_424835 Chr3 6440548 6440549 - COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_424834 Os_TE_424834 Chr3 6440544 6440543 + COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_424835 Os_TE_424828 Chr3 6434875 6434876 - INDITTO 263 0.0167 (50/2989) 0 * Os_TE_424827 Os_TE_424827 Chr3 6434873 6434872 + INDITTO 263 0.0171 (51/2990) 0 * Os_TE_424828 Os_TE_424818 Chr3 6433783 6433784 - STOWAWAY44_OS 240 0.0003 (1/2988) 0 * * Os_TE_424817 Chr3 6433733 6433732 - MuDR4_OS 7610 0.0158 (47/2978) 0 * Os_TE_424816 Os_TE_424816 Chr3 6433716 6433717 - MuDR4_OS 7610 0.0158 (47/2979) 0 * Os_TE_424817 Os_TE_424786 Chr3 6415966 6415967 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_424785 Os_TE_424785 Chr3 6415962 6415961 - COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_424786 Os_TE_424773 Chr3 6412704 6412705 - MIDWAY 985 0.0014 (4/2943) 0 * * Os_TE_424762 Chr3 6408131 6408130 + ORSiTERTOOT00226 792 0.0003 (1/2924) 0 * * Os_TE_424720 Chr3 6387418 6387419 - SC-8_LTR 4951 0.0003 (1/2997) 0 * Os_TE_424719 Os_TE_424719 Chr3 6387414 6387413 + SC-8_LTR 4951 0.0003 (1/2997) 0 * Os_TE_424720 Os_TE_424718 Chr3 6386427 6386426 - SZ-54_LTR 5203 0.0003 (1/2999) 0 * * Os_TE_424713 Chr3 6381946 6381947 - RETRO1_LTR 8314 0.0003 (1/2961) 0 * * Os_TE_424711 Chr3 6380082 6380083 - TELIA 141 0.0003 (1/2999) 0 * Os_TE_424710 Os_TE_424710 Chr3 6380074 6380073 + TELIA 141 0.0003 (1/2999) 0 * Os_TE_424711 Os_TE_424699 Chr3 6371249 6371250 + OLO24 345 0.0003 (1/2993) 0 * Os_TE_424698 Os_TE_424698 Chr3 6371247 6371246 - OLO24 345 0.0003 (1/2992) 0 * Os_TE_424699 Os_TE_424694 Chr3 6368466 6368467 - COPI2_LTR 4733 0.0003 (1/2978) 0 * Os_TE_424693 Os_TE_424693 Chr3 6368462 6368461 + COPI2_LTR 4733 0.0003 (1/2975) 0 * Os_TE_424694 Os_TE_424667 Chr3 6354352 6354140 + ORSgTEMT01601122 212 0.4071 (1218/2992) 1 Intact * Os_TE_424649 Chr3 6348907 6348908 - SC-8_LTR 4951 0.0010 (3/2992) 0 * Os_TE_424648 Os_TE_424648 Chr3 6348903 6348902 + SC-8_LTR 4951 0.0010 (3/2989) 0 * Os_TE_424649 Os_TE_424611 Chr3 6331618 6331619 - MPING 430 0.0007 (2/2990) 0 * Os_TE_424610 Os_TE_424610 Chr3 6331616 6331615 + MPING 430 0.0007 (2/2991) 0 * Os_TE_424611 Os_TE_424576 Chr3 6315197 6315196 - RETRO2A_LTR 12895 0.4453 (1307/2935) 0 * * Os_TE_424566 Chr3 6312811 6312810 + INDITTO 263 0.0020 (6/2996) 0 * * Os_TE_424557 Chr3 6310810 6310809 - SZ-22_LTR 4403 0.0004 (1/2845) 0 * * Os_TE_424516 Chr3 6290699 6290698 + ORSgTEMT01700715 134 0.0014 (4/2810) 0 * * Os_TE_424490 Chr3 6275393 6275392 + ORSiTEMT00300001 383 0.0686 (204/2973) 0 * * Os_TE_424486 Chr3 6271156 6271155 + SZ-4_LTR 5991 0.0005 (1/2086) 0 * * Os_TE_424442 Chr3 6256081 6256082 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * * Os_TE_424413 Chr3 6248325 6248324 - ORSgTEMT00101455 342 0.0007 (2/2911) 0 * * Os_TE_424359 Chr3 6227379 6227380 - COPI2_LTR 4733 0.0003 (1/2911) 0 * * Os_TE_424357 Chr3 6227293 6227292 + TWIFB1 3737 0.0003 (1/2891) 0 * * Os_TE_424356 Chr3 6227235 6227236 - MPING 430 0.0003 (1/2885) 0 * Os_TE_424355 Os_TE_424355 Chr3 6227233 6227232 + MPING 430 0.0003 (1/2882) 0 * Os_TE_424356 Os_TE_424337 Chr3 6214343 6214344 + ORSiTERTOOT00329 5144 0.6896 (2042/2961) 0 * Os_TE_424336 Os_TE_424336 Chr3 6214336 6214335 - ORSiTERTOOT00329 5144 0.6931 (2064/2978) 0 * Os_TE_424337 Os_TE_424332 Chr3 6212794 6206395 - RIRE5-LTR_OS 6427 0.3029 (905/2988) 1 Intact Os_TE_424330 Os_TE_424330 Chr3 6206395 6212791 + RIRE5-LTR_OS 6427 0.2864 (842/2940) 1 Intact Os_TE_424332 Os_TE_424310 Chr3 6186998 6186999 - COPIA2-LTR_OS 6433 0.0010 (1/967) 0 * Os_TE_424309 Os_TE_424309 Chr3 6186994 6186993 + COPIA2-LTR_OS 6433 0.0010 (1/966) 0 * Os_TE_424310 Os_TE_424273 Chr3 6161257 6161258 - ORSgTETNOOT00754 253 0.0140 (42/2992) 0 * Os_TE_424272 Os_TE_424272 Chr3 6161252 6161251 - ORSgTETNOOT00477 252 0.0137 (41/2990) 0 * Os_TE_424273 Os_TE_424263 Chr3 6157925 6157926 + ORSgTEMT00101341 314 0.1116 (330/2956) 0 * * Os_TE_424255 Chr3 6156925 6156924 + INDITTO 263 0.0031 (9/2923) 0 * * Os_TE_424237 Chr3 6154391 6154046 - NDNA2TNA_OS 346 0.3027 (901/2977) 1 Intact * Os_TE_424196 Chr3 6139876 6139877 - MPING 430 0.0040 (12/2995) 0 * Os_TE_424195 Os_TE_424195 Chr3 6139874 6139873 + MPING 430 0.0040 (12/2993) 0 * Os_TE_424196 Os_TE_424164 Chr3 6118580 6118581 + MPING 430 0.0020 (6/2996) 0 * Os_TE_424163 Os_TE_424163 Chr3 6118578 6118577 - MPING 430 0.0020 (6/2993) 0 * Os_TE_424164 Os_TE_424150 Chr3 6112263 6112264 + MDR2 6967 0.0125 (37/2956) 0 * Os_TE_424149 Os_TE_424149 Chr3 6112255 6112254 - MDR2 6967 0.0115 (34/2951) 0 * Os_TE_424150 Os_TE_424146 Chr3 6111310 6110983 + NDNA2TNA_OS 346 0.2905 (869/2991) 1 Intact * Os_TE_424115 Chr3 6101426 6101427 - SC-8_LTR 4951 0.0013 (4/2994) 0 * Os_TE_424114 Os_TE_424114 Chr3 6101422 6101421 + SC-8_LTR 4951 0.0013 (4/2995) 0 * Os_TE_424115 Os_TE_424100 Chr3 6094504 6094505 - SC-3_LTR 5748 0.0003 (1/2987) 0 * Os_TE_424099 Os_TE_424099 Chr3 6094500 6094499 + ORSiTERTOOT00296 5553 0.0003 (1/2987) 0 * Os_TE_424100 Os_TE_424074 Chr3 6081604 6081603 + OSR3_LTR 5201 0.0003 (1/2986) 0 * * Os_TE_424033 Chr3 6062879 6062880 + RETROSAT4_LTR 13504 0.0003 (1/2993) 0 * Os_TE_424032 Os_TE_424032 Chr3 6062875 6062874 - SZ-35LTR 3853 0.0003 (1/2993) 0 * Os_TE_424033 Os_TE_424012 Chr3 6050858 6050859 + RETROSAT4_LTR 13504 0.0487 (145/2978) 0 * Os_TE_424011 Os_TE_424011 Chr3 6050854 6050853 - SZ-35LTR 3853 0.0543 (162/2984) 0 * Os_TE_424012 Os_TE_423986 Chr3 6038546 6038545 - STOWAWAY51_OS 246 0.0003 (1/2992) 0 * Os_TE_423985 Os_TE_423985 Chr3 6038540 6038541 + STOWAWAY51_OS 246 0.0003 (1/2992) 0 * Os_TE_423986 Os_TE_423940 Chr3 6023867 6023866 + TELIA 141 0.0014 (4/2940) 0 * * Os_TE_423884 Chr3 5993060 5993059 - STOWAWAY51_OS 246 0.0003 (1/2985) 0 * * Os_TE_423856 Chr3 5967123 5967122 - STOWAWAY44_OS 240 0.0003 (1/2978) 0 * * Os_TE_423793 Chr3 5927198 5927197 + ORSgTEMT00501422 147 0.0003 (1/2967) 0 * * Os_TE_423790 Chr3 5925748 5925749 + SC-8_LTR 4951 0.0007 (2/2960) 0 * Os_TE_423789 Os_TE_423789 Chr3 5925744 5925743 - SC-8_LTR 4951 0.0007 (2/2952) 0 * Os_TE_423790 Os_TE_423774 Chr3 5907316 5907315 + RETRO2_LTR 12874 0.0011 (3/2719) 0 * * Os_TE_423744 Chr3 5892112 5892113 + COPIA2-LTR_OS 6433 0.0040 (12/2991) 0 * * Os_TE_423711 Chr3 5882065 5882066 + COPI2_LTR 4733 0.0003 (1/2978) 0 * * Os_TE_423689 Chr3 5870139 5870140 + TWIF 586 0.0004 (1/2809) 0 * Os_TE_423688 Os_TE_423688 Chr3 5870132 5870131 - ORSiTETNOOT00134 607 0.0004 (1/2837) 0 * Os_TE_423689 Os_TE_423684 Chr3 5869387 5869388 + RETROSAT2LTRA 3112 0.3933 (1167/2967) 0 * Os_TE_423683 Os_TE_423683 Chr3 5869383 5869382 - RETROSAT2LTRA 3112 0.3983 (1188/2983) 0 * Os_TE_423684 Os_TE_423644 Chr3 5846999 5846998 + MPING 430 0.0013 (4/2965) 0 * * Os_TE_423643 Chr3 5846872 5846015 - MUDRN1_OS 764 0.3050 (908/2977) 1 Intact Os_TE_423642 Os_TE_423642 Chr3 5846010 5846872 + MUDRN2_OS 756 0.2972 (877/2951) 1 Intact Os_TE_423643 Os_TE_423631 Chr3 5844928 5844929 + TWIF 586 0.0004 (1/2512) 0 * Os_TE_423630 Os_TE_423630 Chr3 5844921 5844920 - ORSiTETNOOT00134 607 0.0004 (1/2609) 0 * Os_TE_423631 Os_TE_423609 Chr3 5823472 5823473 - ORSgTEMT00600085 364 0.0020 (6/2959) 0 * Os_TE_423608 Os_TE_423608 Chr3 5823469 5823468 + ORSgTEMT00600502 360 0.0024 (7/2969) 0 * Os_TE_423609 Os_TE_423588 Chr3 5821302 5821303 - INDITTO 263 0.0127 (38/2987) 0 * Os_TE_423587 Os_TE_423587 Chr3 5821300 5821299 + INDITTO 263 0.0127 (38/2993) 0 * Os_TE_423588 Os_TE_423573 Chr3 5811835 5811836 + ORSiTERTOOT00296 5553 0.0003 (1/2989) 0 * Os_TE_423572 Os_TE_423572 Chr3 5811831 5811830 - SC-3_LTR 5748 0.0003 (1/2990) 0 * Os_TE_423573 Os_TE_423555 Chr3 5802149 5802148 - SC-4_LTR 5218 0.0007 (2/2945) 0 * * Os_TE_423525 Chr3 5794720 5794721 - INDITTO 263 0.0030 (9/2974) 0 * Os_TE_423524 Os_TE_423524 Chr3 5794718 5794717 + INDITTO 263 0.0030 (9/2971) 0 * Os_TE_423525 Os_TE_423392 Chr3 5717502 5717503 - RIREX_LTR 8828 0.0054 (16/2988) 0 * Os_TE_423391 Os_TE_423391 Chr3 5717498 5717497 + RIREX_LTR 8828 0.0054 (16/2989) 0 * Os_TE_423392 Os_TE_423345 Chr3 5699259 5699260 - INDITTO 263 0.0321 (92/2867) 0 * Os_TE_423344 Os_TE_423344 Chr3 5699257 5699256 + INDITTO 263 0.0307 (90/2929) 0 * Os_TE_423345 Os_TE_423336 Chr3 5695502 5695503 + TWIFBIG 3567 0.0010 (3/2904) 0 * * Os_TE_423331 Chr3 5694986 5694985 - MPING 430 0.0003 (1/2995) 0 * * Os_TE_423323 Chr3 5692172 5692173 + OSTE33 1012 0.0760 (220/2893) 0 * Os_TE_423322 Os_TE_423322 Chr3 5692165 5692164 + OSTE33 1012 0.0435 (122/2802) 0 * Os_TE_423323 Os_TE_423321 Chr3 5692085 5692084 + AMYLTP 383 0.0003 (1/2939) 0 * * Os_TE_423287 Chr3 5672895 5672896 + TWIFB1 3737 0.0421 (125/2972) 0 * Os_TE_423286 Os_TE_423286 Chr3 5672888 5672887 - TWIFB1 3737 0.0405 (120/2966) 0 * Os_TE_423287 Os_TE_423248 Chr3 5656112 5656113 - ORSgTEMT04200023 393 0.0020 (6/2986) 0 * Os_TE_423247 Os_TE_423247 Chr3 5656104 5656103 - ECR 394 0.0020 (6/2985) 0 * Os_TE_423248 Os_TE_423224 Chr3 5639522 5639523 + ORSgTEMT01701258 154 0.0004 (1/2455) 0 * * Os_TE_423217 Chr3 5634675 5634676 - AMYLTP 383 0.5638 (1674/2969) 0 * Os_TE_423216 Os_TE_423216 Chr3 5634667 5634666 + AMYLTP 383 0.5497 (1592/2896) 0 * Os_TE_423217 Os_TE_423150 Chr3 5606136 5606135 - TRUNCATOR 2918 0.5412 (1582/2923) 0 * Os_TE_423149 Os_TE_423149 Chr3 5606135 5606136 + TRUNCATOR 2918 0.5578 (1665/2985) 0 * Os_TE_423150 Os_TE_423113 Chr3 5583074 5583073 - STOWAWAY51_OS 246 0.0003 (1/2943) 0 * * Os_TE_423107 Chr3 5581781 5581780 + STOWAWAY51_OS 246 0.0003 (1/2990) 0 * * Os_TE_423061 Chr3 5558187 5558186 - OSTE18 129 0.0017 (5/2997) 0 * * Os_TE_423059 Chr3 5555545 5555546 - STOWAWAY1_OS 149 0.0007 (2/2953) 0 * * Os_TE_423054 Chr3 5552102 5552103 + F804 170 0.0017 (5/2919) 0 * Os_TE_423053 Os_TE_423053 Chr3 5552094 5552093 - F804 170 0.0021 (6/2921) 0 * Os_TE_423054 Os_TE_423011 Chr3 5530607 5530608 - ORSiTETNOOT00134 607 0.0003 (1/2998) 0 * * Os_TE_422977 Chr3 5522638 5522639 + STOWAWAY51_OS 246 0.0003 (1/2989) 0 * * Os_TE_422948 Chr3 5504728 5504299 - MPING 430 0.0130 (39/2995) 1 Intact Os_TE_422947 Os_TE_422947 Chr3 5504299 5504728 + MPING 430 0.0134 (40/2996) 1 Intact Os_TE_422948 Os_TE_422932 Chr3 5501967 5501408 + QINNIU 528 0.1717 (493/2871) 1 Intact Os_TE_422931 Os_TE_422931 Chr3 5501407 5501967 - HATOS1 3488 0.1401 (392/2798) 1 Intact Os_TE_422932 Os_TE_422918 Chr3 5491104 5490870 + ORSgTETNOOT00908 242 0.3132 (927/2960) 1 Intact Os_TE_422916 Os_TE_422916 Chr3 5490864 5491100 + ORSgTETNOOT00012 241 0.3090 (918/2971) 1 Intact Os_TE_422918 Os_TE_422895 Chr3 5475473 5475472 - OSLINE1_1 4159 0.0320 (95/2967) 0 * * Os_TE_422852 Chr3 5455209 5455208 + COPI2_LTR 4733 0.0003 (1/2977) 0 * * Os_TE_422838 Chr3 5450863 5450864 + ORSgTEMT01601591 242 0.0050 (15/2988) 0 * * Os_TE_422815 Chr3 5441702 5441701 + STOWAWAY51_OS 246 0.0468 (140/2994) 0 * Os_TE_422814 Os_TE_422814 Chr3 5441696 5441697 + ORSgTEMT01601591 242 0.0468 (140/2993) 0 * Os_TE_422815 Os_TE_422813 Chr3 5441280 5441156 + OSTE18 129 0.3086 (925/2997) 1 Intact * Os_TE_422799 Chr3 5433440 5433439 - INDITTO 263 0.0003 (1/2965) 0 * * Os_TE_422790 Chr3 5426267 5426268 - HARB-1_OS 5166 0.0003 (1/2996) 0 * Os_TE_422789 Os_TE_422789 Chr3 5426265 5426264 + HARB-1_OS 5166 0.0003 (1/2996) 0 * Os_TE_422790 Os_TE_422768 Chr3 5413468 5413467 + TWIFB1 3737 0.0003 (1/2977) 0 * * Os_TE_422766 Chr3 5411046 5411047 + HARB-1_OS 5166 0.0003 (1/2980) 0 * Os_TE_422765 Os_TE_422765 Chr3 5411044 5411043 - HARB-1_OS 5166 0.0003 (1/2988) 0 * Os_TE_422766 Os_TE_422758 Chr3 5410199 5410512 - ORSgTEMT00100906 337 0.3340 (876/2623) 1 Intact * Os_TE_422719 Chr3 5383862 5383863 + F804 170 0.0008 (2/2576) 0 * * Os_TE_422614 Chr3 5338023 5338022 + ORSgTEMT01601591 242 0.0107 (32/2997) 0 * Os_TE_422613 Os_TE_422613 Chr3 5338017 5338018 + STOWAWAY51_OS 246 0.0107 (32/2996) 0 * Os_TE_422614 Os_TE_422611 Chr3 5337200 5337199 - AMYLTP 383 0.0007 (2/2934) 0 * * Os_TE_422600 Chr3 5330093 5330094 - RIREX_LTR 8828 0.0010 (3/2997) 0 * Os_TE_422599 Os_TE_422599 Chr3 5330089 5330088 + RIREX_LTR 8828 0.0010 (3/2996) 0 * Os_TE_422600 Os_TE_422580 Chr3 5316510 5316511 - ORSgTETNOOT00754 253 0.0013 (4/2995) 0 * Os_TE_422579 Os_TE_422579 Chr3 5316508 5316507 + ORSgTETNOOT01998 254 0.0013 (4/2992) 0 * Os_TE_422580 Os_TE_422568 Chr3 5310139 5310138 + ORSiTERTOOT00296 5553 0.0003 (1/2990) 0 * * Os_TE_422560 Chr3 5302335 5301472 + MuDR3_OS 8604 0.2972 (882/2968) 1 Intact Os_TE_422559 Os_TE_422559 Chr3 5301472 5302331 - MuDR3_OS 8604 0.2961 (880/2972) 1 Intact Os_TE_422560 Os_TE_422536 Chr3 5291916 5291917 + RIREX_LTR 8828 0.0013 (4/2964) 0 * Os_TE_422535 Os_TE_422535 Chr3 5291912 5291911 - RIREX_LTR 8828 0.0014 (4/2960) 0 * Os_TE_422536 Os_TE_422523 Chr3 5289543 5289544 + ORSiTERTOOT00296 5553 0.0007 (2/2991) 0 * Os_TE_422522 Os_TE_422522 Chr3 5289539 5289538 - SC-3_LTR 5748 0.0007 (2/2991) 0 * Os_TE_422523 Os_TE_422506 Chr3 5281078 5281077 - LINE1-8_OS 7101 0.0003 (1/2987) 0 * * Os_TE_422483 Chr3 5271025 5271026 - ORSiTERTOOT00332 5395 0.0003 (1/2997) 0 * Os_TE_422482 Os_TE_422482 Chr3 5271021 5271020 + ORSiTERTOOT00332 5395 0.0003 (1/2998) 0 * Os_TE_422483 Os_TE_422478 Chr3 5270675 5270676 + RIREX_LTR 8828 0.0003 (1/2998) 0 * Os_TE_422477 Os_TE_422477 Chr3 5270671 5270670 - RIREX_LTR 8828 0.0003 (1/2996) 0 * Os_TE_422478 Os_TE_422458 Chr3 5264071 5264072 - TNR3 1536 0.0010 (3/2979) 0 * Os_TE_422457 Os_TE_422457 Chr3 5264069 5264068 - ENSPM3_OS 10837 0.0020 (6/2985) 0 * Os_TE_422458 Os_TE_422456 Chr3 5263591 5263592 - RETROFIT_LTR 4866 0.0003 (1/2985) 0 * * Os_TE_422451 Chr3 5261708 5261709 - COPIA2-LTR_OS 6433 0.0003 (1/2956) 0 * Os_TE_422450 Os_TE_422450 Chr3 5261704 5261703 + COPIA2-LTR_OS 6433 0.0003 (1/2969) 0 * Os_TE_422451 Os_TE_422437 Chr3 5258635 5258634 - ORSiTETNOOT00134 607 0.0004 (1/2496) 0 * * Os_TE_422419 Chr3 5250899 5250657 - TESS 244 0.3014 (903/2996) 1 Intact Os_TE_422418 Os_TE_422418 Chr3 5250656 5250899 + TESS 244 0.2985 (892/2988) 1 Intact Os_TE_422419 Os_TE_422411 Chr3 5239001 5239000 + STOWAWAY51_OS 246 0.0004 (1/2838) 0 * * Os_TE_422405 Chr3 5237541 5237540 - TYPEM 227 0.5590 (1626/2909) 0 * Os_TE_422404 Os_TE_422404 Chr3 5237540 5237541 - ORSgTEMT02400246 177 0.5516 (1594/2890) 0 * Os_TE_422405 Os_TE_422389 Chr3 5229777 5229778 - INDITTO 263 0.5427 (1619/2983) 0 * Os_TE_422388 Os_TE_422388 Chr3 5229775 5229774 + INDITTO 263 0.5480 (1622/2960) 0 * Os_TE_422389 Os_TE_422376 Chr3 5227640 5227639 + RIREX_LTR 8828 0.0007 (2/2986) 0 * * Os_TE_422372 Chr3 5223299 5223298 + STOWAWAY51_OS 246 0.0003 (1/2995) 0 * Os_TE_422371 Os_TE_422371 Chr3 5223293 5223294 - STOWAWAY51_OS 246 0.0003 (1/2994) 0 * Os_TE_422372 Os_TE_422355 Chr3 5214103 5214104 - ORSiTETNOOT00134 607 0.0003 (1/2962) 0 * * Os_TE_422334 Chr3 5205635 5205636 - RIREX_LTR 8828 0.0003 (1/2991) 0 * Os_TE_422333 Os_TE_422333 Chr3 5205631 5205630 + RIREX_LTR 8828 0.0003 (1/2988) 0 * Os_TE_422334 Os_TE_422327 Chr3 5197855 5196705 + CACTA-B 1103 0.3004 (896/2983) 1 Intact Os_TE_422325 Os_TE_422325 Chr3 5196702 5197852 + ORSgTETN00200005 1121 0.3009 (899/2988) 1 Intact Os_TE_422327 Os_TE_422323 Chr3 5194967 5194968 - KIDDOB 280 0.0007 (2/2994) 0 * * Os_TE_422319 Chr3 5192535 5192534 + F770 284 0.0007 (2/2995) 0 * * Os_TE_422275 Chr3 5183006 5183007 + HARB-1_OS 5166 0.0003 (1/2998) 0 * * Os_TE_422213 Chr3 5154097 5154098 - RIREX_LTR 8828 0.0003 (1/2991) 0 * Os_TE_422212 Os_TE_422212 Chr3 5154093 5154092 + RIREX_LTR 8828 0.0003 (1/2990) 0 * Os_TE_422213 Os_TE_422208 Chr3 5152144 5152143 + NDNA1TNA_OS 334 0.0011 (1/934) 0 * * Os_TE_422198 Chr3 5147358 5147359 - NDNA1TNA_OS 334 0.0010 (3/2990) 0 * Os_TE_422197 Os_TE_422197 Chr3 5147356 5147355 + NDNA1TNA_OS 334 0.0010 (3/2986) 0 * Os_TE_422198 Os_TE_422190 Chr3 5145696 5145695 - RETROSAT2LTR 12796 0.0003 (1/2992) 0 * * Os_TE_422181 Chr3 5143748 5143749 - MERMITEA 1710 0.7017 (2070/2950) 0 * Os_TE_422180 Os_TE_422180 Chr3 5143740 5143739 - MERMITEA 1710 0.7060 (2113/2993) 0 * Os_TE_422181 Os_TE_422177 Chr3 5141136 5141137 + NDNA1TNA_OS 334 0.0003 (1/2995) 0 * * Os_TE_422170 Chr3 5140288 5140289 + ORSgTEMT01601591 242 0.0003 (1/2987) 0 * * Os_TE_422143 Chr3 5130403 5130404 + COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_422142 Os_TE_422142 Chr3 5130399 5130398 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_422143 Os_TE_422141 Chr3 5128813 5128814 + MuDR3_OS 8604 0.0075 (22/2950) 0 * Os_TE_422140 Os_TE_422140 Chr3 5128805 5128804 - MuDR3_OS 8604 0.0064 (19/2959) 0 * Os_TE_422141 Os_TE_422127 Chr3 5122274 5122275 + STOWAWAY47_OS 148 0.0003 (1/2953) 0 * * Os_TE_422125 Chr3 5121323 5121324 + HARB-1_OS 5166 0.0007 (2/2991) 0 * * Os_TE_422106 Chr3 5114189 5114188 - HARB-1_OS 5166 0.0007 (2/2946) 0 * * Os_TE_422096 Chr3 5109952 5109951 - RETROSAT4_LTR 13504 0.6877 (2050/2981) 0 * * Os_TE_422084 Chr3 5104766 5104767 - COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_422083 Os_TE_422083 Chr3 5104762 5104761 + COPI2_LTR 4733 0.0003 (1/2993) 0 * Os_TE_422084 Os_TE_422070 Chr3 5102931 5102932 - RETRO2_LTR 12874 0.0010 (3/2902) 0 * * Os_TE_422064 Chr3 5100300 5100301 - TYPEM 227 0.0003 (1/2998) 0 * * Os_TE_422060 Chr3 5096466 5096467 - COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_422059 Os_TE_422059 Chr3 5096462 5096461 + COPI2_LTR 4733 0.0003 (1/2997) 0 * Os_TE_422060 Os_TE_422055 Chr3 5091864 5091863 - TRUNCATOR 2918 0.0020 (6/2992) 0 * Os_TE_422054 Os_TE_422054 Chr3 5091863 5091864 + TRUNCATOR 2918 0.0027 (8/2996) 0 * Os_TE_422055 Os_TE_422036 Chr3 5077900 5077901 + HARB-1_OS 5166 0.0003 (1/2986) 0 * Os_TE_422035 Os_TE_422035 Chr3 5077898 5077897 - HARB-1_OS 5166 0.0003 (1/2988) 0 * Os_TE_422036 Os_TE_422004 Chr3 5061379 5061380 - OSTE24 683 0.0114 (34/2989) 0 * Os_TE_422003 Os_TE_422003 Chr3 5061369 5061368 - OSTE24 683 0.0111 (33/2986) 0 * Os_TE_422004 Os_TE_421999 Chr3 5060811 5060810 + TWIFB1 3737 0.0003 (1/2996) 0 * * Os_TE_421990 Chr3 5057200 5057199 + RETRO2A_LTR 12895 0.0105 (31/2950) 0 * * Os_TE_421982 Chr3 5054974 5054975 - ORSgTEMT00501403 148 0.0003 (1/2931) 0 * * Os_TE_421978 Chr3 5054019 5054018 - ORSiTERTOOT00367 5639 0.0007 (2/2991) 0 * * Os_TE_421907 Chr3 5031139 5031140 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_421906 Os_TE_421906 Chr3 5031135 5031134 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_421907 Os_TE_421894 Chr3 5029105 5028044 + CACTA-B 1103 0.3042 (888/2919) 1 Intact Os_TE_421893 Os_TE_421893 Chr3 5028044 5029102 - CACTA-H 1152 0.3033 (885/2918) 1 Intact Os_TE_421894 Os_TE_421878 Chr3 5025650 5025651 - ORSiTERTOOT00291 11421 0.0020 (6/2928) 0 * * Os_TE_421861 Chr3 5019423 5019422 + ORSgTEMT01601591 242 0.0003 (1/2996) 0 * Os_TE_421860 Os_TE_421860 Chr3 5019417 5019418 + STOWAWAY51_OS 246 0.0003 (1/2994) 0 * Os_TE_421861 Os_TE_421859 Chr3 5018877 5018876 + ORSiTERTOOT00226 792 0.0003 (1/2997) 0 * * Os_TE_421856 Chr3 5017516 5017153 - CASTAWAY 364 0.1234 (369/2991) 1 Intact Os_TE_421851 Os_TE_421851 Chr3 5017153 5017516 + ORSgTEMT00600120 364 0.1250 (374/2993) 1 Intact Os_TE_421856 Os_TE_421833 Chr3 5008406 5008405 + RETROSAT2LTR 12796 0.0448 (133/2970) 0 * * Os_TE_421827 Chr3 5004908 5004909 + ORSiTERTOOT00291 11421 0.0024 (7/2966) 0 * * Os_TE_421814 Chr3 4997011 4997012 - SZ-35LTR 3853 0.0177 (52/2943) 0 * * Os_TE_421810 Chr3 4995838 4995839 - ORSgTEMT02000041 194 0.0112 (33/2951) 0 * * Os_TE_421776 Chr3 4983555 4983556 + RIRE2_LTR 11306 0.0061 (18/2966) 0 * * Os_TE_421775 Chr3 4983429 4983430 - NDNA1TNA_OS 334 0.0094 (28/2972) 0 * Os_TE_421774 Os_TE_421774 Chr3 4983427 4983426 + NDNA1TNA_OS 334 0.0094 (28/2970) 0 * Os_TE_421775 Os_TE_421773 Chr3 4983396 4983397 - RIRE3_LTR 12054 0.0003 (1/2970) 0 * Os_TE_421772 Os_TE_421772 Chr3 4983392 4983391 - RIRE3A_LTR 10580 0.0003 (1/2968) 0 * Os_TE_421773 Os_TE_421770 Chr3 4982553 4982552 - ORSiTEMT01300001 950 0.0004 (1/2636) 0 * * Os_TE_421759 Chr3 4979857 4979856 + TRUNCATOR 2918 0.0004 (1/2665) 0 * Os_TE_421758 Os_TE_421758 Chr3 4979856 4979857 - TRUNCATOR 2918 0.0004 (1/2670) 0 * Os_TE_421759 Os_TE_421754 Chr3 4978704 4978703 - ORSgTEMT01500002 239 0.1179 (349/2959) 0 * * Os_TE_421741 Chr3 4976232 4976373 + ORSgTEMT00500475 149 0.8952 (2374/2652) 1 Intact * Os_TE_421732 Chr3 4973510 4973511 + COPI2_LTR 4733 0.0005 (1/1941) 0 * * Os_TE_421707 Chr3 4959281 4959280 - RIREX_LTR 8828 0.0010 (3/2991) 0 * * Os_TE_421700 Chr3 4954116 4954115 - SUSU 279 0.0003 (1/2994) 0 * * Os_TE_421697 Chr3 4952455 4952456 + ORSiTERTOOT00269 10834 0.1047 (313/2989) 0 * * Os_TE_421694 Chr3 4951095 4951094 - RPO_OS 1983 0.1043 (312/2992) 0 * * Os_TE_421688 Chr3 4946019 4945774 + ORSgTEMT01602181 239 0.8965 (2617/2919) 1 Intact * Os_TE_421673 Chr3 4938207 4938208 + F569 228 0.0446 (128/2870) 0 * Os_TE_421672 Os_TE_421672 Chr3 4938205 4938204 - F569 228 0.0468 (135/2884) 0 * Os_TE_421673 Os_TE_421656 Chr3 4933411 4932434 - DS-RICE4N 715 0.4182 (1245/2977) 1 Intact * Os_TE_421654 Chr3 4931023 4931024 - COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * Os_TE_421653 Os_TE_421653 Chr3 4931019 4931018 + COPIA2-LTR_OS 6433 0.0003 (1/2979) 0 * Os_TE_421654 Os_TE_421651 Chr3 4929891 4929892 - NDNA2TNA_OS 346 0.5932 (1770/2984) 0 * * Os_TE_421646 Chr3 4928732 4928733 + SZ-9LTR 965 0.0004 (1/2695) 0 * * Os_TE_421643 Chr3 4928524 4928646 + ORSgTEMT01700429 128 0.3719 (1074/2888) 1 Intact * Os_TE_421639 Chr3 4927360 4927361 + STOWAWAY51_OS 246 0.0009 (1/1101) 0 * * Os_TE_421638 Chr3 4927002 4927003 - MERMITE18E 1528 0.6429 (1912/2974) 0 * Os_TE_421637 Os_TE_421637 Chr3 4926998 4926997 - MERMITE18E 1528 0.4702 (979/2082) 0 * Os_TE_421638 Os_TE_421633 Chr3 4922257 4922258 + ORSgTEMT00101116 321 0.0505 (151/2993) 0 * * Os_TE_421623 Chr3 4921269 4921268 + ORSgTEMT01601591 242 0.0101 (30/2983) 0 * Os_TE_421622 Os_TE_421622 Chr3 4921263 4921264 + STOWAWAY51_OS 246 0.0107 (32/2990) 0 * Os_TE_421623 Os_TE_421594 Chr3 4909495 4908813 - OSTE24 683 0.2766 (802/2899) 1 Intact * Os_TE_421589 Chr3 4904093 4904092 + ORSgTETNOOT00686 140 0.0521 (156/2997) 0 * Os_TE_421588 Os_TE_421588 Chr3 4904092 4904093 - ORSgTEMT00501356 145 0.0534 (160/2996) 0 * Os_TE_421589 Os_TE_421585 Chr3 4901510 4901509 + F770 284 0.0517 (155/2999) 0 * * Os_TE_421577 Chr3 4900669 4900670 - SZ-22_LTR 4403 0.0010 (3/2982) 0 * Os_TE_421576 Os_TE_421576 Chr3 4900665 4900664 + ORSiTERTOOT00034 791 0.0007 (2/2957) 0 * Os_TE_421577 Os_TE_421575 Chr3 4900627 4900628 - TELIA 141 0.0003 (1/2977) 0 * Os_TE_421574 Os_TE_421574 Chr3 4900619 4900618 + TELIA 141 0.0003 (1/2982) 0 * Os_TE_421575 Os_TE_421573 Chr3 4900610 4900609 - COPI2_LTR 4733 0.0017 (5/2978) 0 * Os_TE_421572 Os_TE_421572 Chr3 4900609 4900610 + COPI2_LTR 4733 0.0013 (4/2977) 0 * Os_TE_421573 Os_TE_421569 Chr3 4899982 4899981 - STOWAWAY51_OS 246 0.6561 (1910/2911) 0 * * Os_TE_421566 Chr3 4899779 4899778 - ORSgTETNOOT01930 140 0.0334 (96/2874) 0 * * Os_TE_421547 Chr3 4897526 4897527 - DS-RICE2N 613 0.6411 (1913/2984) 0 * Os_TE_421546 Os_TE_421546 Chr3 4897519 4897518 + DS-RICE2N 613 0.6365 (1886/2963) 0 * Os_TE_421547 Os_TE_421534 Chr3 4888032 4888033 + OSTE33 1012 0.3236 (968/2991) 0 * Os_TE_421533 Os_TE_421533 Chr3 4888023 4888022 + OSTE33 1012 0.3168 (943/2977) 0 * Os_TE_421534 Os_TE_421531 Chr3 4885389 4885388 - TRUNCATOR 2918 0.0067 (19/2845) 0 * * Os_TE_421513 Chr3 4876400 4876401 - ORSiTERT00200154 9386 0.0098 (28/2857) 0 * * Os_TE_421495 Chr3 4871268 4871269 - MPING 430 0.0014 (4/2852) 0 * Os_TE_421494 Os_TE_421494 Chr3 4871266 4871265 + MPING 430 0.0014 (4/2846) 0 * Os_TE_421495 Os_TE_421471 Chr3 4857830 4857831 - TYPEM 227 0.0525 (156/2970) 0 * * Os_TE_421469 Chr3 4856887 4856888 + ORSgTEMT00500260 149 0.0003 (1/2979) 0 * * Os_TE_421467 Chr3 4855807 4855808 + COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_421466 Os_TE_421466 Chr3 4855803 4855802 - COPI2_LTR 4733 0.0003 (1/2997) 0 * Os_TE_421467 Os_TE_421460 Chr3 4852277 4852276 - SZ-22_LTR 4403 0.0007 (2/2991) 0 * * Os_TE_421454 Chr3 4846813 4846814 - COPIA2-LTR_OS 6433 0.0003 (1/2893) 0 * * Os_TE_421451 Chr3 4846437 4846438 + INDITTO 263 0.0003 (1/2970) 0 * Os_TE_421450 Os_TE_421450 Chr3 4846435 4846434 - INDITTO 263 0.0003 (1/2984) 0 * Os_TE_421451 Os_TE_421449 Chr3 4846410 4846411 - MPING 430 0.0003 (1/2953) 0 * Os_TE_421448 Os_TE_421448 Chr3 4846408 4846407 + MPING 430 0.0003 (1/2956) 0 * Os_TE_421449 Os_TE_421439 Chr3 4845682 4845681 - HARB-1_OS 5166 0.0003 (1/2990) 0 * * Os_TE_421428 Chr3 4835515 4835514 - ORSgTEMT02400246 177 0.0050 (15/2990) 0 * Os_TE_421427 Os_TE_421427 Chr3 4835514 4835515 - TYPEM 227 0.0050 (15/2988) 0 * Os_TE_421428 Os_TE_421417 Chr3 4834565 4834566 - RETROSAT4_LTR 13504 0.0020 (6/2969) 0 * * Os_TE_421415 Chr3 4833810 4833809 + ORSgTETNOOT01834 251 0.0013 (4/2995) 0 * * Os_TE_421398 Chr3 4829879 4829880 + CRATA 4786 0.0133 (39/2942) 0 * * Os_TE_421397 Chr3 4829822 4829823 + CRATA 4786 0.0411 (122/2965) 0 * Os_TE_421396 Os_TE_421396 Chr3 4829815 4829814 - CRATA 4786 0.0447 (133/2973) 0 * Os_TE_421397 Os_TE_421392 Chr3 4823919 4823920 - F770 284 0.0003 (1/2994) 0 * Os_TE_421391 Os_TE_421391 Chr3 4823917 4823916 + F770 284 0.0003 (1/2996) 0 * Os_TE_421392 Os_TE_421385 Chr3 4822316 4822317 + COPIA2-LTR_OS 6433 0.0003 (1/2912) 0 * * Os_TE_421376 Chr3 4820578 4820579 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * * Os_TE_421374 Chr3 4820453 4820454 + TWIFB1 3737 0.0003 (1/2996) 0 * * Os_TE_421327 Chr3 4800932 4800933 - COPIA2-LTR_OS 6433 0.0004 (1/2838) 0 * Os_TE_421326 Os_TE_421326 Chr3 4800928 4800927 + COPIA2-LTR_OS 6433 0.0004 (1/2814) 0 * Os_TE_421327 Os_TE_421324 Chr3 4800848 4800847 - INDITTO 263 0.0083 (23/2755) 0 * * Os_TE_421319 Chr3 4799343 4799342 + SC-1_LTR 6888 0.0100 (30/2999) 0 * * Os_TE_421305 Chr3 4787396 4787397 + SC-3_LTR 5748 0.0003 (1/2995) 0 * Os_TE_421304 Os_TE_421304 Chr3 4787392 4787391 - SC-3_LTR 5748 0.0003 (1/2993) 0 * Os_TE_421305 Os_TE_421295 Chr3 4778783 4778784 - COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_421294 Os_TE_421294 Chr3 4778779 4778778 + COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_421295 Os_TE_421290 Chr3 4774417 4774418 - SZ-67LTR 1540 0.0007 (2/2965) 0 * Os_TE_421289 Os_TE_421289 Chr3 4774413 4774412 + SZ-67LTR 1540 0.0007 (2/2967) 0 * Os_TE_421290 Os_TE_421258 Chr3 4758631 4758632 - F569 228 0.0003 (1/2995) 0 * Os_TE_421257 Os_TE_421257 Chr3 4758629 4758628 + F569 228 0.0003 (1/2994) 0 * Os_TE_421258 Os_TE_421245 Chr3 4755286 4755287 + RIREX_LTR 8828 0.0013 (4/2994) 0 * Os_TE_421244 Os_TE_421244 Chr3 4755283 4755282 - RIREX_LTR 8828 0.0013 (4/2991) 0 * Os_TE_421245 Os_TE_421239 Chr3 4753799 4753800 - RIREX_LTR 8828 0.0044 (13/2972) 0 * Os_TE_421238 Os_TE_421238 Chr3 4753795 4753794 + RIREX_LTR 8828 0.0044 (13/2979) 0 * Os_TE_421239 Os_TE_421228 Chr3 4751447 4751446 - AMYLTP 383 0.0027 (8/2991) 0 * * Os_TE_421227 Chr3 4751378 4751379 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * * Os_TE_421225 Chr3 4750936 4750937 - ORSgTEMT02400179 221 0.0007 (2/2993) 0 * Os_TE_421224 Os_TE_421224 Chr3 4750935 4750934 - TYPEM 227 0.0007 (2/2989) 0 * Os_TE_421225 Os_TE_421219 Chr3 4748095 4748096 - ORSiTETN00200006 8216 0.5017 (1496/2982) 0 * Os_TE_421218 Os_TE_421218 Chr3 4748093 4748092 + ORSiTETN00200006 8216 0.4998 (1487/2975) 0 * Os_TE_421219 Os_TE_421217 Chr3 4747603 4747604 - ORSgTETN00200001 10994 0.0033 (5/1516) 0 * Os_TE_421216 Os_TE_421216 Chr3 4747601 4747600 + SPMLIKE 10989 0.0040 (6/1516) 0 * Os_TE_421217 Os_TE_421207 Chr3 4742614 4742615 + OLO24 345 0.0067 (20/2992) 0 * Os_TE_421206 Os_TE_421206 Chr3 4742612 4742611 - OLO24 345 0.0067 (20/2991) 0 * Os_TE_421207 Os_TE_421205 Chr3 4742503 4742502 + STOWAWAY51_OS 246 0.0003 (1/2973) 0 * Os_TE_421204 Os_TE_421204 Chr3 4742497 4742498 - STOWAWAY51_OS 246 0.0003 (1/2959) 0 * Os_TE_421205 Os_TE_421203 Chr3 4742377 4742378 + MPING 430 0.0003 (1/2970) 0 * Os_TE_421202 Os_TE_421202 Chr3 4742375 4742374 - MPING 430 0.0003 (1/2968) 0 * Os_TE_421203 Os_TE_421188 Chr3 4736993 4736994 + OLO24 345 0.0067 (20/2992) 0 * Os_TE_421187 Os_TE_421187 Chr3 4736991 4736990 - OLO24 345 0.0067 (20/2994) 0 * Os_TE_421188 Os_TE_421165 Chr3 4726617 4726618 - OLO24 345 0.0067 (20/2996) 0 * Os_TE_421164 Os_TE_421164 Chr3 4726615 4726614 + OLO24 345 0.0067 (20/2998) 0 * Os_TE_421165 Os_TE_421162 Chr3 4725602 4725603 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_421161 Os_TE_421161 Chr3 4725598 4725597 - COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_421162 Os_TE_421128 Chr3 4701366 4701367 - FOCUS 257 0.0004 (1/2751) 0 * * Os_TE_421119 Chr3 4692451 4692452 - RIREX_LTR 8828 0.0003 (1/2990) 0 * Os_TE_421118 Os_TE_421118 Chr3 4692447 4692446 + RIREX_LTR 8828 0.0003 (1/2991) 0 * Os_TE_421119 Os_TE_421104 Chr3 4690514 4690513 + ORSgTETNOOT00908 242 0.0316 (94/2973) 0 * * Os_TE_421096 Chr3 4687710 4687709 + STOWAWAY51_OS 246 0.0026 (7/2743) 0 * Os_TE_421095 Os_TE_421095 Chr3 4687704 4687705 + ORSgTEMT01601591 242 0.0029 (8/2742) 0 * Os_TE_421096 Os_TE_421086 Chr3 4685380 4685381 + TNR2A 152 0.6184 (1791/2896) 0 * Os_TE_421085 Os_TE_421085 Chr3 4685363 4685362 - TNR2A 152 0.1194 (126/1055) 0 * Os_TE_421086 Os_TE_421081 Chr3 4684390 4684389 + RIREX_LTR 8828 0.0003 (1/2987) 0 * * Os_TE_421048 Chr3 4670115 4670116 + CLOUD-7 495 0.2466 (342/1387) 0 * * Os_TE_421046 Chr3 4668942 4668943 - ORSgTEMT00300141 415 0.0030 (9/2992) 0 * * Os_TE_421043 Chr3 4660748 4660747 + ORSgTEMT00501356 145 0.0020 (6/2951) 0 * Os_TE_421042 Os_TE_421042 Chr3 4660717 4660718 + ORSgTETNOOT01930 140 0.0014 (4/2961) 0 * Os_TE_421043 Os_TE_421030 Chr3 4659863 4659862 + NDNA1TNA_OS 334 0.0003 (1/2975) 0 * * Os_TE_421024 Chr3 4652080 4652081 + ORSgTEMT00600272 361 0.0442 (132/2987) 0 * * Os_TE_421023 Chr3 4651451 4651452 - COPIA2-LTR_OS 6433 0.0003 (1/2986) 0 * Os_TE_421022 Os_TE_421022 Chr3 4651447 4651446 + COPIA2-LTR_OS 6433 0.0003 (1/2981) 0 * Os_TE_421023 Os_TE_421020 Chr3 4651049 4651048 - ORSgTEMT02400246 177 0.0720 (215/2985) 0 * Os_TE_421019 Os_TE_421019 Chr3 4651048 4651049 - TYPEM 227 0.0704 (210/2981) 0 * Os_TE_421020 Os_TE_421013 Chr3 4649627 4649628 - TRUNCATOR2_LTR 2904 0.0089 (22/2463) 0 * Os_TE_421012 Os_TE_421012 Chr3 4649623 4649622 + ORSiCMCM00100019 2717 0.0080 (23/2881) 0 * Os_TE_421013 Os_TE_421011 Chr3 4649598 4646008 - ORSiTETNOOT00200 3563 0.2813 (810/2880) 1 Intact Os_TE_421010 Os_TE_421010 Chr3 4646008 4649597 + TWIFBIG 3567 0.2955 (868/2937) 1 Intact Os_TE_421011 Os_TE_420994 Chr3 4643195 4643196 + INDITTO 263 0.0640 (190/2970) 0 * Os_TE_420993 Os_TE_420993 Chr3 4643193 4643192 - INDITTO 263 0.0625 (186/2974) 0 * Os_TE_420994 Os_TE_420963 Chr3 4637247 4637248 + MPING 430 0.0097 (29/2982) 0 * Os_TE_420962 Os_TE_420962 Chr3 4637245 4637244 - MPING 430 0.0101 (30/2982) 0 * Os_TE_420963 Os_TE_420957 Chr3 4634895 4634896 - HARB-1_OS 5166 0.0010 (3/2979) 0 * Os_TE_420956 Os_TE_420956 Chr3 4634893 4634892 + HARB-1_OS 5166 0.0010 (3/2975) 0 * Os_TE_420957 Os_TE_420949 Chr3 4633713 4633712 + NDNA1TNA_OS 334 0.0007 (2/2806) 0 * Os_TE_420948 Os_TE_420948 Chr3 4633712 4633713 + ORSgTEMT00100428 339 0.0003 (1/2923) 0 * Os_TE_420949 Os_TE_420946 Chr3 4632878 4632879 - SZ-22_LTR 4403 0.0003 (1/2994) 0 * Os_TE_420945 Os_TE_420945 Chr3 4632874 4632873 + ORSiTERTOOT00226 792 0.0003 (1/2992) 0 * Os_TE_420946 Os_TE_420941 Chr3 4631635 4631634 + ORSgTEMT01601591 242 0.1420 (424/2985) 0 * Os_TE_420940 Os_TE_420940 Chr3 4631629 4631630 + STOWAWAY51_OS 246 0.1348 (400/2967) 0 * Os_TE_420941 Os_TE_420939 Chr3 4630916 4630917 + OSTE20 496 0.0491 (116/2364) 0 * Os_TE_420938 Os_TE_420938 Chr3 4630912 4630911 - OSTE20 496 0.0531 (126/2374) 0 * Os_TE_420939 Os_TE_420930 Chr3 4627854 4627601 - STOWAWAY41_OS 264 0.3487 (1041/2985) 1 Intact * Os_TE_420922 Chr3 4625812 4625813 + RIREX_LTR 8828 0.0003 (1/2965) 0 * * Os_TE_420915 Chr3 4621904 4621905 + COPI2_LTR 4733 0.0007 (2/2999) 0 * Os_TE_420914 Os_TE_420914 Chr3 4621900 4621899 - COPI2_LTR 4733 0.0007 (2/2999) 0 * Os_TE_420915 Os_TE_420902 Chr3 4618441 4618442 + DS-RICE3N 525 0.0003 (1/2998) 0 * * Os_TE_420880 Chr3 4608824 4608825 + ORSgTEMT01400030 214 0.0015 (4/2700) -1 * * Os_TE_420863 Chr3 4604320 4604321 - CACTA-M 1129 0.1650 (492/2982) 0 * Os_TE_420862 Os_TE_420862 Chr3 4604318 4604317 + CACTA-I 1124 0.1716 (514/2996) 0 * Os_TE_420863 Os_TE_420860 Chr3 4603791 4603792 + RETROSAT4_LTR 13504 0.5862 (1724/2941) 0 * Os_TE_420859 Os_TE_420859 Chr3 4603787 4603786 - RETROSAT4_LTR 13504 0.5919 (1762/2977) 0 * Os_TE_420860 Os_TE_420831 Chr3 4581179 4580816 - ORSgTEMT00600524 364 0.1824 (545/2988) 1 Intact Os_TE_420830 Os_TE_420830 Chr3 4580816 4581176 + ORSgTEMT00600272 361 0.1817 (543/2989) 1 Intact Os_TE_420831 Os_TE_420825 Chr3 4577345 4577346 - RIREX_LTR 8828 0.0013 (4/2990) 0 * Os_TE_420824 Os_TE_420824 Chr3 4577341 4577340 + RIREX_LTR 8828 0.0013 (4/2994) 0 * Os_TE_420825 Os_TE_420807 Chr3 4571225 4571224 - STOWAWAY51_OS 246 0.2539 (759/2989) 0 * Os_TE_420806 Os_TE_420806 Chr3 4571219 4571220 + STOWAWAY51_OS 246 0.2527 (756/2992) 0 * Os_TE_420807 Os_TE_420803 Chr3 4567179 4567178 + ORSgTERT00201441 428 0.0003 (1/2995) 0 * * Os_TE_420799 Chr3 4559533 4559534 - SC-8_LTR 4951 0.0003 (1/2994) 0 * Os_TE_420798 Os_TE_420798 Chr3 4559529 4559528 + SC-8_LTR 4951 0.0003 (1/2993) 0 * Os_TE_420799 Os_TE_420777 Chr3 4540498 4540499 + WUWU 113 0.0573 (170/2968) 0 * Os_TE_420776 Os_TE_420776 Chr3 4540490 4540489 + WUWU 113 0.0563 (167/2967) 0 * Os_TE_420777 Os_TE_420775 Chr3 4539742 4539743 - INDITTO 263 0.5236 (1519/2901) 0 * Os_TE_420774 Os_TE_420774 Chr3 4539740 4539739 - ORSgTETNOOT00762 266 0.5117 (1529/2988) 0 * Os_TE_420775 Os_TE_420772 Chr3 4539031 4539032 + RIREX_LTR 8828 0.0631 (189/2993) 0 * Os_TE_420771 Os_TE_420771 Chr3 4539027 4539026 - RIREX_LTR 8828 0.0598 (179/2991) 0 * Os_TE_420772 Os_TE_420761 Chr3 4531676 4531677 + ORSgTETNOOT00908 242 0.6374 (1893/2970) 0 * * Os_TE_420739 Chr3 4527714 4527715 - ORSgTEMT00700002 381 0.0007 (2/2714) 0 * * Os_TE_420708 Chr3 4522919 4522918 + ORSgTETNOOT00908 242 0.0003 (1/2896) 0 * * Os_TE_420706 Chr3 4521593 4521594 + STOWAWAY51_OS 246 0.1114 (331/2972) 0 * * Os_TE_420692 Chr3 4510971 4510972 - INDITTO 263 0.3787 (1126/2973) 0 * Os_TE_420691 Os_TE_420691 Chr3 4510969 4510968 + INDITTO 263 0.3765 (1119/2972) 0 * Os_TE_420692 Os_TE_420686 Chr3 4507829 4507830 - INDITTO 263 0.0014 (4/2962) 0 * Os_TE_420685 Os_TE_420685 Chr3 4507827 4507826 + INDITTO 263 0.0017 (5/2964) 0 * Os_TE_420686 Os_TE_420662 Chr3 4502648 4502647 + ORSgTEMT02400034 225 0.0622 (185/2975) 0 * * Os_TE_420655 Chr3 4501550 4501551 + CASLET 354 0.4010 (1181/2945) 0 * Os_TE_420654 Os_TE_420654 Chr3 4501548 4501547 - CASLET 354 0.4041 (1188/2940) 0 * Os_TE_420655 Os_TE_420642 Chr3 4492142 4492143 - MPING 430 0.0010 (3/2996) 0 * Os_TE_420641 Os_TE_420641 Chr3 4492140 4492139 + MPING 430 0.0010 (3/2996) 0 * Os_TE_420642 Os_TE_420624 Chr3 4480290 4480291 + RIREX_LTR 8828 0.0005 (1/1829) 0 * Os_TE_420623 Os_TE_420623 Chr3 4480286 4480285 - RIRE2_LTR 11306 0.0005 (1/1834) 0 * Os_TE_420624 Os_TE_420608 Chr3 4471861 4471860 + RETROSAT2LTR 12796 0.0017 (5/2991) 0 * * Os_TE_420602 Chr3 4468112 4468111 + OSTE1 801 0.0020 (6/2996) 0 * * Os_TE_420581 Chr3 4458598 4458597 - RIREX_LTR 8828 0.0003 (1/2966) 0 * * Os_TE_420573 Chr3 4456277 4456278 - TRUNCATOR2_LTR 2904 0.0004 (1/2801) 0 * Os_TE_420572 Os_TE_420572 Chr3 4456273 4456272 + TRUNCATOR2_LTR 2904 0.0004 (1/2784) 0 * Os_TE_420573 Os_TE_420570 Chr3 4455180 4451907 + SZ-40LTR 2465 0.3261 (966/2962) 1 Intact * Os_TE_420564 Chr3 4451601 4451600 + SZ-67LTR 1540 0.0010 (3/2940) 0 * * Os_TE_420552 Chr3 4443480 4443479 + ORSgTETNOOT00908 242 0.3829 (1145/2990) 0 * * Os_TE_420537 Chr3 4440633 4440217 + ORSgTEMT00300122 416 0.2858 (848/2967) 1 Intact Os_TE_420536 Os_TE_420536 Chr3 4440211 4440629 + ORSgTEMT00300069 394 0.2880 (851/2955) 1 Intact Os_TE_420537 Os_TE_420522 Chr3 4427805 4427806 + MPING 430 0.0063 (19/2993) 0 * Os_TE_420521 Os_TE_420521 Chr3 4427803 4427802 - MPING 430 0.0064 (19/2989) 0 * Os_TE_420522 Os_TE_420516 Chr3 4427258 4427259 + AMYLTP 383 0.3212 (957/2979) 0 * Os_TE_420515 Os_TE_420515 Chr3 4427250 4427249 - AMYLTP 383 0.3198 (952/2977) 0 * Os_TE_420516 Os_TE_420499 Chr3 4414095 4414096 + ORSiTERTOOT00296 5553 0.0027 (8/2993) 0 * Os_TE_420498 Os_TE_420498 Chr3 4414091 4414090 - SC-3_LTR 5748 0.0023 (7/2987) 0 * Os_TE_420499 Os_TE_420467 Chr3 4394358 4394357 - STOWAWAY18_OS 216 0.6758 (2020/2989) 0 * * Os_TE_420459 Chr3 4391638 4391639 + COPI1_LTR 4721 0.0020 (6/2991) 0 * Os_TE_420458 Os_TE_420458 Chr3 4391634 4391633 - SZ-25LTR 330 0.0020 (6/2990) 0 * Os_TE_420459 Os_TE_420454 Chr3 4390711 4390712 + RETRO2_LTR 12874 0.0003 (1/2916) 0 * * Os_TE_420446 Chr3 4385047 4385048 + RIREX_LTR 8828 0.0003 (1/2996) 0 * Os_TE_420445 Os_TE_420445 Chr3 4385043 4385042 - RIREX_LTR 8828 0.0003 (1/2994) 0 * Os_TE_420446 Os_TE_420427 Chr3 4382563 4382564 + OSTE33 1012 0.6834 (1815/2656) 0 * Os_TE_420426 Os_TE_420426 Chr3 4382554 4382553 + OSTE33 1012 0.6722 (1739/2587) 0 * Os_TE_420427 Os_TE_420403 Chr3 4378228 4378229 - OSLINE1_2 6317 0.1345 (392/2914) 0 * * Os_TE_420392 Chr3 4376475 4376476 - ORSgTETNOOT01028 232 0.0008 (2/2571) 0 * Os_TE_420391 Os_TE_420391 Chr3 4376460 4376459 + ORSgTETNOOT00032 218 0.1234 (358/2900) 0 * Os_TE_420392 Os_TE_420369 Chr3 4373804 4373803 + COPI2_LTR 4733 0.0387 (111/2869) 0 * * Os_TE_420364 Chr3 4369612 4369613 + HARB-1_OS 5166 0.0023 (7/2989) 0 * Os_TE_420363 Os_TE_420363 Chr3 4369610 4369609 - HARB-1_OS 5166 0.0023 (7/2989) 0 * Os_TE_420364 Os_TE_420353 Chr3 4367199 4367200 - SZ-4_LTR 5991 0.0023 (7/2993) 0 * Os_TE_420352 Os_TE_420352 Chr3 4367195 4367194 + SZ-4_LTR 5991 0.0020 (6/2996) 0 * Os_TE_420353 Os_TE_420324 Chr3 4355255 4355254 + ORSgTETNOOT00908 242 0.0089 (26/2923) 0 * * Os_TE_420323 Chr3 4355201 4355202 + STOWAWAY44_OS 240 0.0007 (2/2978) 0 * * Os_TE_420322 Chr3 4355071 4355072 + INDITTO 263 0.0060 (18/2976) 0 * Os_TE_420321 Os_TE_420321 Chr3 4355069 4355068 - INDITTO 263 0.0060 (18/2981) 0 * Os_TE_420322 Os_TE_420304 Chr3 4348497 4348498 - SINE6_OS 119 0.0030 (9/2975) 0 * * Os_TE_420287 Chr3 4343407 4343708 + STOWAWAY50_OS 174 0.8903 (2516/2826) 1 Intact * Os_TE_420280 Chr3 4331626 4331625 - ORSgTERT00200405 1335 0.0007 (2/2978) 0 * * Os_TE_420276 Chr3 4328168 4328167 - SZ-30_LTR 6377 0.0003 (1/2978) 0 * * Os_TE_420267 Chr3 4324948 4324949 + ORSgTETNOOT00908 242 0.1125 (336/2986) 0 * * Os_TE_420266 Chr3 4324094 4324095 - RIREX_LTR 8828 0.0003 (1/2993) 0 * Os_TE_420265 Os_TE_420265 Chr3 4324090 4324089 + RIREX_LTR 8828 0.0003 (1/2990) 0 * Os_TE_420266 Os_TE_420252 Chr3 4321300 4321299 - RETROSAT2LTR 12796 0.0003 (1/2967) 0 * * Os_TE_420210 Chr3 4304741 4304742 - TEMPINDAS 4259 0.0003 (1/2950) 0 * * Os_TE_420196 Chr3 4302678 4292550 + HELITRON7_OS 10153 0.2232 (669/2997) 1 Intact Os_TE_420195 Os_TE_420195 Chr3 4292550 4302678 - HELITRON7_OS 10153 0.2223 (666/2996) 1 Intact Os_TE_420196 Os_TE_420188 Chr3 4281033 4281034 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_420187 Os_TE_420187 Chr3 4281029 4281028 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_420188 Os_TE_420152 Chr3 4266176 4266177 - COPIA2-LTR_OS 6433 0.0003 (1/2969) 0 * Os_TE_420151 Os_TE_420151 Chr3 4266172 4266171 + COPIA2-LTR_OS 6433 0.0003 (1/2967) 0 * Os_TE_420152 Os_TE_420141 Chr3 4265830 4265831 - ORSgTETNOOT00754 253 0.0305 (91/2981) 0 * Os_TE_420140 Os_TE_420140 Chr3 4265828 4265827 + ORSgTETNOOT01998 254 0.0304 (91/2991) 0 * Os_TE_420141 Os_TE_420114 Chr3 4255350 4255349 - STOWAWAY51_OS 246 0.0047 (14/2961) 0 * * Os_TE_420091 Chr3 4253462 4253461 + RETRO2A_LTR 12895 0.1284 (368/2865) 0 * * Os_TE_420083 Chr3 4250880 4250881 + RIREX_LTR 8828 0.0007 (2/2980) 0 * Os_TE_420082 Os_TE_420082 Chr3 4250876 4250875 - RIREX_LTR 8828 0.0007 (2/2976) 0 * Os_TE_420083 Os_TE_420067 Chr3 4242510 4242509 + ORSgTEMT01700789 143 0.0017 (5/2941) 0 * Os_TE_420066 Os_TE_420066 Chr3 4242507 4242508 - ORSgTEMT01702346 154 0.0014 (4/2947) 0 * Os_TE_420067 Os_TE_420060 Chr3 4240190 4240189 + ORSgTETNOOT00032 218 0.1668 (496/2973) 0 * * Os_TE_420042 Chr3 4231676 4231675 - NDNA1TNA_OS 334 0.6130 (1834/2992) 0 * Os_TE_420041 Os_TE_420041 Chr3 4231675 4231676 + ORSgTEMT00100949 340 0.6060 (1795/2962) 0 * Os_TE_420042 Os_TE_419964 Chr3 4184783 4184784 + MuDR3_OS 8604 0.7410 (1359/1834) 0 * * Os_TE_419956 Chr3 4181976 4181977 - MPING 430 0.0003 (1/2994) 0 * Os_TE_419955 Os_TE_419955 Chr3 4181974 4181973 + MPING 430 0.0003 (1/2992) 0 * Os_TE_419956 Os_TE_419939 Chr3 4172465 4172464 - ORSgTETNOOT00754 253 0.0004 (1/2845) 0 * * Os_TE_419903 Chr3 4160653 4161334 - OSTE24 683 0.1671 (390/2334) -1 Intact * Os_TE_419878 Chr3 4140090 4139676 + ORSgTEMT00300122 416 0.3504 (1047/2988) 1 Intact Os_TE_419876 Os_TE_419876 Chr3 4139669 4140086 + ORSgTEMT00300069 394 0.3525 (1054/2990) 1 Intact Os_TE_419878 Os_TE_419874 Chr3 4139443 4139444 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_419873 Os_TE_419873 Chr3 4139439 4139438 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_419874 Os_TE_419852 Chr3 4132001 4132002 + COPI2_LTR 4733 0.0003 (1/2942) 0 * Os_TE_419851 Os_TE_419851 Chr3 4131997 4131996 - COPI2_LTR 4733 0.0003 (1/2937) 0 * Os_TE_419852 Os_TE_419839 Chr3 4125830 4125831 + ORSiTERTOOT00226 792 0.0003 (1/2996) 0 * Os_TE_419838 Os_TE_419838 Chr3 4125826 4125825 - SZ-22_LTR 4403 0.0003 (1/2990) 0 * Os_TE_419839 Os_TE_419830 Chr3 4115004 4115005 - CACTA-M 1129 0.0003 (1/2976) 0 * Os_TE_419829 Os_TE_419829 Chr3 4115002 4115001 + CACTA-I 1124 0.0003 (1/2973) 0 * Os_TE_419830 Os_TE_419810 Chr3 4105943 4105944 - RIRE3_LTR 12054 0.0051 (15/2963) 0 * * Os_TE_419761 Chr3 4080362 4080361 - ORSgTEMT02400246 177 0.8039 (2407/2994) 0 * Os_TE_419760 Os_TE_419760 Chr3 4080355 4080356 + ORSgTEMT02400014 229 0.8006 (2397/2994) 0 * Os_TE_419761 Os_TE_419749 Chr3 4078020 4078021 + ORSiTEMT00300001 383 0.0003 (1/2993) 0 * * Os_TE_419746 Chr3 4077784 4077785 + SC-4_LTR 5218 0.0010 (3/2996) 0 * Os_TE_419745 Os_TE_419745 Chr3 4077780 4077779 - SC-4_LTR 5218 0.0010 (3/2995) 0 * Os_TE_419746 Os_TE_419703 Chr3 4066833 4066834 - ORSgTERT00200882 422 0.0013 (3/2255) 0 * * Os_TE_419680 Chr3 4055968 4055967 + STOWAWAY51_OS 246 0.0040 (12/2990) 0 * * Os_TE_419674 Chr3 4055212 4050225 - MuDR3_OS 8604 0.1848 (548/2966) 1 Intact Os_TE_419670 Os_TE_419670 Chr3 4050222 4055212 - MuDR3_OS 8604 0.1921 (573/2983) 1 Intact Os_TE_419674 Os_TE_419657 Chr3 4045212 4045213 + INDITTO 263 0.5923 (1774/2995) 0 * Os_TE_419656 Os_TE_419656 Chr3 4045210 4045209 - INDITTO 263 0.5902 (1767/2994) 0 * Os_TE_419657 Os_TE_419653 Chr3 4044743 4044744 + OLO24 345 0.1862 (558/2997) 0 * Os_TE_419652 Os_TE_419652 Chr3 4044741 4044740 - OLO24 345 0.1850 (554/2995) 0 * Os_TE_419653 Os_TE_419649 Chr3 4043896 4043895 + COPI2_LTR 4733 0.0003 (1/2993) 0 * * Os_TE_419648 Chr3 4042874 4042875 + ORSgTETNOOT00908 242 0.6302 (1885/2991) 0 * Os_TE_419647 Os_TE_419647 Chr3 4042869 4042868 + ORSgTETNOOT01219 231 0.6275 (1873/2985) 0 * Os_TE_419648 Os_TE_419642 Chr3 4040061 4040062 - COPI2_LTR 4733 0.0010 (3/2998) 0 * Os_TE_419641 Os_TE_419641 Chr3 4040057 4040056 + COPI2_LTR 4733 0.0007 (2/2998) 0 * Os_TE_419642 Os_TE_419639 Chr3 4039698 4039697 - STOWAWAY44_OS 240 0.0003 (1/2990) 0 * * Os_TE_419633 Chr3 4037865 4037866 - AMYLTP 383 0.6595 (1681/2549) 0 * Os_TE_419632 Os_TE_419632 Chr3 4037857 4037856 + AMYLTP 383 0.6713 (1771/2638) 0 * Os_TE_419633 Os_TE_419626 Chr3 4037150 4037149 + STOWAWAY51_OS 246 0.0080 (24/2999) 0 * Os_TE_419625 Os_TE_419625 Chr3 4037144 4037145 - STOWAWAY51_OS 246 0.0080 (24/2998) 0 * Os_TE_419626 Os_TE_419624 Chr3 4037055 4037056 + COPI2_LTR 4733 0.0003 (1/2998) 0 * * Os_TE_419621 Chr3 4036305 4036306 - RIREX_LTR 8828 0.0003 (1/2994) 0 * * Os_TE_419614 Chr3 4034213 4034214 - MPING 430 0.0003 (1/2993) 0 * * Os_TE_419606 Chr3 4031296 4031295 + MPING 430 0.0023 (7/2995) 0 * * Os_TE_419598 Chr3 4030445 4030446 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_419597 Os_TE_419597 Chr3 4030441 4030440 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_419598 Os_TE_419590 Chr3 4029095 4029096 + MPING 430 0.0003 (1/2955) 0 * Os_TE_419589 Os_TE_419589 Chr3 4029093 4029092 - MPING 430 0.0003 (1/2977) 0 * Os_TE_419590 Os_TE_419564 Chr3 4020024 4020023 + COPI1_LTR 4721 0.0017 (5/2997) 0 * * Os_TE_419559 Chr3 4018580 4018581 + COPIA2-LTR_OS 6433 0.0007 (2/2972) 0 * * Os_TE_419557 Chr3 4018308 4018309 - RETRO2A_LTR 12895 0.0050 (15/2999) 0 * Os_TE_419556 Os_TE_419556 Chr3 4018304 4018303 + RETRO2A_LTR 12895 0.0053 (16/2999) 0 * Os_TE_419557 Os_TE_419552 Chr3 4013913 4013914 - SZLTR 1249 0.1565 (469/2996) 0 * Os_TE_419551 Os_TE_419551 Chr3 4013910 4013909 + RETRO2_LTR 12874 0.1499 (448/2988) 0 * Os_TE_419552 Os_TE_419480 Chr3 3974783 3974784 - DS-RICE2N 613 0.0003 (1/2989) 0 * Os_TE_419479 Os_TE_419479 Chr3 3974776 3974775 + DS-RICE2N 613 0.0003 (1/2993) 0 * Os_TE_419480 Os_TE_419472 Chr3 3968446 3968064 + AMYLTP 383 0.1798 (536/2981) 1 Intact * Os_TE_419468 Chr3 3967615 3967616 + ORSiTERTOOT00226 792 0.0065 (12/1839) 0 * Os_TE_419467 Os_TE_419467 Chr3 3967611 3967610 - SZ-22_LTR 4403 0.0060 (11/1837) 0 * Os_TE_419468 Os_TE_419427 Chr3 3943172 3943171 + ORSiTERTOOT00074 4935 0.0040 (12/2975) 0 * * Os_TE_419397 Chr3 3920721 3920722 + RIREX_LTR 8828 0.0018 (1/560) 0 * Os_TE_419396 Os_TE_419396 Chr3 3920717 3920716 - RIREX_LTR 8828 0.0018 (1/561) 0 * Os_TE_419397 Os_TE_419373 Chr3 3911918 3911919 + COPIA2-LTR_OS 6433 0.0007 (2/2987) 0 * Os_TE_419372 Os_TE_419372 Chr3 3911914 3911913 - COPIA2-LTR_OS 6433 0.0007 (2/2987) 0 * Os_TE_419373 Os_TE_419371 Chr3 3911909 3911910 + RIREX_LTR 8828 0.0007 (2/2990) 0 * Os_TE_419370 Os_TE_419370 Chr3 3911905 3911904 - RIREX_LTR 8828 0.0003 (1/2987) 0 * Os_TE_419371 Os_TE_419356 Chr3 3904781 3904780 - ORSiTERTOOT00398 5651 0.0016 (1/608) 0 * * Os_TE_419355 Chr3 3904721 3893974 - ORSgTETN00200001 10994 0.1784 (529/2966) 1 Intact Os_TE_419347 Os_TE_419347 Chr3 3893974 3904721 + SPMLIKE 10989 0.1795 (531/2959) 1 Intact Os_TE_419355 Os_TE_419344 Chr3 3892639 3892640 + STOWAWAY49_OS 241 0.7921 (2035/2569) 0 * * Os_TE_419343 Chr3 3892376 3892377 + ENSPM3_OS 10837 0.8236 (2423/2942) 0 * Os_TE_419342 Os_TE_419342 Chr3 3892374 3892373 - ENSPM3_OS 10837 0.8146 (2315/2842) 0 * Os_TE_419343 Os_TE_419340 Chr3 3891850 3891957 - ORSgTEMT00501219 127 0.1773 (526/2966) 1 Intact * Os_TE_419338 Chr3 3889990 3889991 - RETROSAT2LTR 12796 0.0019 (4/2111) 0 * * Os_TE_419334 Chr3 3889139 3889138 - ORSgTEMT01602467 227 0.7764 (1847/2379) 0 * Os_TE_419333 Os_TE_419333 Chr3 3889105 3889106 - MERMITEA 1710 0.8278 (2476/2991) 0 * Os_TE_419334 Os_TE_419328 Chr3 3887346 3887347 + ORSgTEMT01601122 212 0.7789 (1772/2275) 0 * * Os_TE_419327 Chr3 3887312 3887311 + ORSgTEMT01601591 242 0.8015 (1970/2458) 0 * Os_TE_419326 Os_TE_419326 Chr3 3887309 3887310 - STOWAWAY51_OS 246 0.8300 (2359/2842) 0 * Os_TE_419327 Os_TE_419290 Chr3 3872636 3872637 + MPING 430 0.1154 (296/2566) 0 * Os_TE_419289 Os_TE_419289 Chr3 3872634 3872633 - MPING 430 0.1085 (295/2718) 0 * Os_TE_419290 Os_TE_419264 Chr3 3858385 3858386 - ORSgTEMT02000041 194 0.1512 (448/2962) 0 * * Os_TE_419254 Chr3 3853895 3853894 - SZ-9LTR 965 0.0003 (1/2975) 0 * * Os_TE_419248 Chr3 3853293 3853294 - MPING 430 0.0003 (1/2998) 0 * Os_TE_419247 Os_TE_419247 Chr3 3853291 3853290 + MPING 430 0.0003 (1/2998) 0 * Os_TE_419248 Os_TE_419246 Chr3 3853170 3853171 + STOWAWAY44_OS 240 0.0003 (1/2998) 0 * * Os_TE_419231 Chr3 3850615 3850614 - RETRO1_LTR 8314 0.1507 (449/2979) 0 * * Os_TE_419177 Chr3 3830190 3830191 + KIDDOC 275 0.0003 (1/2985) 0 * Os_TE_419176 Os_TE_419176 Chr3 3830186 3830185 - KIDDOC 275 0.0003 (1/2985) 0 * Os_TE_419177 Os_TE_419175 Chr3 3830034 3829799 + ORSgTETNOOT00908 242 0.2589 (775/2994) 1 Intact Os_TE_419174 Os_TE_419174 Chr3 3829800 3830030 + ORSgTETNOOT01219 231 0.2603 (779/2993) 1 Intact Os_TE_419175 Os_TE_419170 Chr3 3828165 3828381 + ORSgTETNOOT01219 231 0.2621 (782/2984) 1 Intact * Os_TE_419163 Chr3 3825539 3825538 + ORSgTEMT01400032 215 0.7363 (1896/2575) 0 * * Os_TE_419160 Chr3 3825397 3825148 + ORSgTEMT01601255 232 0.2436 (706/2898) 1 Intact * Os_TE_419148 Chr3 3823687 3823688 + ORSgTETNOOT01834 251 0.0007 (2/2947) 0 * Os_TE_419147 Os_TE_419147 Chr3 3823685 3823684 + ORSgTETNOOT01834 251 0.0007 (2/2950) 0 * Os_TE_419148 Os_TE_419111 Chr3 3796123 3796122 + STOWAWAY51_OS 246 0.0040 (12/2990) 0 * * Os_TE_419071 Chr3 3779808 3779807 - TEOS1 476 0.0003 (1/2986) 0 * * Os_TE_419066 Chr3 3779097 3779096 - STOWAWAY44_OS 240 0.0003 (1/2994) 0 * * Os_TE_419062 Chr3 3777443 3777442 + SZ-30_LTR 6377 0.0003 (1/2910) 0 * * Os_TE_419059 Chr3 3776880 3776881 - COPI2_LTR 4733 0.0003 (1/2991) 0 * * Os_TE_419053 Chr3 3775749 3775748 + DITAILA 257 0.0020 (6/2991) 0 * Os_TE_419052 Os_TE_419052 Chr3 3775748 3775749 - DITAIL 271 0.0020 (6/2991) 0 * Os_TE_419053 Os_TE_419043 Chr3 3772055 3772056 + ORSgTEMT01601591 242 0.0003 (1/2965) 0 * * Os_TE_419042 Chr3 3771958 3771608 + NDNA2TNA_OS 346 0.8731 (2586/2962) 1 Intact Os_TE_419037 Os_TE_419037 Chr3 3771603 3771950 - NDNA2TNA_OS 346 0.8777 (2627/2993) 1 Intact Os_TE_419042 Os_TE_419036 Chr3 3771331 3771332 - COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_419035 Os_TE_419035 Chr3 3771327 3771326 + COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_419036 Os_TE_418988 Chr3 3749629 3749628 + STOWAWAY51_OS 246 0.0003 (1/2988) 0 * Os_TE_418987 Os_TE_418987 Chr3 3749620 3749621 + STOWAWAY51_OS 246 0.0003 (1/2993) 0 * Os_TE_418988 Os_TE_418974 Chr3 3743990 3743991 + ORSiTERTOOT00296 5553 0.0003 (1/2974) 0 * Os_TE_418973 Os_TE_418973 Chr3 3743986 3743985 - SC-3_LTR 5748 0.0003 (1/2977) 0 * Os_TE_418974 Os_TE_418938 Chr3 3725761 3725762 + ORSiTERTOOT00381 4988 0.0003 (1/2997) 0 * Os_TE_418937 Os_TE_418937 Chr3 3725757 3725756 - SC-8_LTR 4951 0.0003 (1/2999) 0 * Os_TE_418938 Os_TE_418882 Chr3 3702066 3702067 - STOWAWAY51_OS 246 0.0010 (3/2989) 0 * * Os_TE_418858 Chr3 3687379 3687380 + NDNA2TNA_OS 346 0.1096 (325/2964) 0 * Os_TE_418857 Os_TE_418857 Chr3 3687377 3687376 - NDNA2TNA_OS 346 0.1092 (324/2966) 0 * Os_TE_418858 Os_TE_418853 Chr3 3685684 3685683 - OSTE15 1168 0.0003 (1/2953) 0 * * Os_TE_418844 Chr3 3680328 3680327 - STOWAWAY51_OS 246 0.0003 (1/2997) 0 * * Os_TE_418833 Chr3 3674243 3674242 - SZ-4_LTR 5991 0.0007 (2/2835) 0 * * Os_TE_418830 Chr3 3671147 3671146 - ORSgTEMT00900349 250 0.0020 (6/2966) 0 * * Os_TE_418829 Chr3 3671077 3671076 + ORSiTERTOOT00226 792 0.0003 (1/2978) 0 * * Os_TE_418796 Chr3 3647988 3647987 + ORSiTERTOOT00296 5553 0.0003 (1/2995) 0 * * Os_TE_418749 Chr3 3619243 3619244 - TYPEM 227 0.0003 (1/2978) 0 * Os_TE_418748 Os_TE_418748 Chr3 3619242 3619241 - ORSgTEMT02400179 221 0.0003 (1/2978) 0 * Os_TE_418749 Os_TE_418740 Chr3 3615058 3615059 - ORSgTETNOOT00754 253 0.0003 (1/2955) 0 * Os_TE_418739 Os_TE_418739 Chr3 3615056 3615055 + ORSgTETNOOT01998 254 0.0003 (1/2958) 0 * Os_TE_418740 Os_TE_418738 Chr3 3614802 3614803 + MERMITEJ 1498 0.0010 (3/2989) 0 * * Os_TE_418709 Chr3 3611221 3610888 + NDNA1TNA_OS 334 0.2516 (686/2727) 1 Intact Os_TE_418708 Os_TE_418708 Chr3 3610888 3611221 - NDNA1TNA_OS 334 0.2632 (703/2671) 1 Intact Os_TE_418709 Os_TE_418674 Chr3 3601064 3601065 + COPI2_LTR 4733 0.0007 (2/2967) 0 * Os_TE_418673 Os_TE_418673 Chr3 3601060 3601059 - COPI2_LTR 4733 0.0010 (3/2970) 0 * Os_TE_418674 Os_TE_418659 Chr3 3570303 3570302 - RIREX_LTR 8828 0.0003 (1/2990) 0 * * Os_TE_418658 Chr3 3570222 3570223 + RIREX_LTR 8828 0.0027 (8/2989) 0 * * Os_TE_418653 Chr3 3568604 3568605 + ORSgTETNOOT01834 251 0.0003 (1/2997) 0 * * Os_TE_418644 Chr3 3563533 3563534 - SC-8_LTR 4951 0.0003 (1/2993) 0 * Os_TE_418643 Os_TE_418643 Chr3 3563529 3563528 + SC-8_LTR 4951 0.0003 (1/2993) 0 * Os_TE_418644 Os_TE_418594 Chr3 3546417 3546418 + SC-8_LTR 4951 0.0063 (19/2994) 0 * Os_TE_418593 Os_TE_418593 Chr3 3546413 3546412 - SC-8_LTR 4951 0.0063 (19/2997) 0 * Os_TE_418594 Os_TE_418580 Chr3 3537447 3537446 + ORSiTERTOOT00034 791 0.0003 (1/2927) 0 * * Os_TE_418561 Chr3 3535912 3535913 - NDNA1TNA_OS 334 0.0999 (298/2983) 0 * Os_TE_418560 Os_TE_418560 Chr3 3535910 3535909 + NDNA1TNA_OS 334 0.0978 (292/2985) 0 * Os_TE_418561 Os_TE_418511 Chr3 3506623 3506622 - TYPEU1 380 0.5818 (1736/2984) 0 * * Os_TE_418499 Chr3 3501398 3501397 + STOWAWAY21_OS 243 0.0007 (2/2995) 0 * * Os_TE_418493 Chr3 3499165 3499166 + ORSiTERTOOT00296 5553 0.0023 (7/2996) 0 * Os_TE_418492 Os_TE_418492 Chr3 3499161 3499160 - SC-3_LTR 5748 0.0023 (7/2994) 0 * Os_TE_418493 Os_TE_418490 Chr3 3498343 3498342 - RIREX_LTR 8828 0.0020 (6/2999) 0 * * Os_TE_418464 Chr3 3488990 3488991 + SC-8_LTR 4951 0.0003 (1/2998) 0 * Os_TE_418463 Os_TE_418463 Chr3 3488986 3488985 - SC-8_LTR 4951 0.0003 (1/2998) 0 * Os_TE_418464 Os_TE_418458 Chr3 3485317 3485318 - RETROSAT2LTRA 3112 0.0003 (1/2997) 0 * * Os_TE_418456 Chr3 3484695 3484696 - SC-3_LTR 5748 0.0007 (2/2995) 0 * Os_TE_418455 Os_TE_418455 Chr3 3484691 3484690 + ORSiTERTOOT00296 5553 0.0007 (2/2995) 0 * Os_TE_418456 Os_TE_418449 Chr3 3482529 3482530 + ORSiTERTOOT00381 4988 0.0010 (3/2996) 0 * Os_TE_418448 Os_TE_418448 Chr3 3482525 3482524 - SC-8_LTR 4951 0.0010 (3/2997) 0 * Os_TE_418449 Os_TE_418439 Chr3 3476973 3476974 - COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_418438 Os_TE_418438 Chr3 3476969 3476968 + COPIA2-LTR_OS 6433 0.0003 (1/2986) 0 * Os_TE_418439 Os_TE_418425 Chr3 3474337 3474336 + MPING 430 0.0004 (1/2759) 0 * * Os_TE_418422 Chr3 3472234 3472233 + RETROSAT4_LTR 13504 0.0003 (1/2990) 0 * * Os_TE_418421 Chr3 3471612 3471611 - Cassandra_OS-LTR 764 0.0010 (3/2991) 0 * * Os_TE_418418 Chr3 3467242 3467241 + MDR2 6967 0.0013 (2/1505) 0 * * Os_TE_418399 Chr3 3459597 3459598 + CACTA-I 1124 0.0009 (1/1148) 0 * * Os_TE_418348 Chr3 3443407 3443408 + Cassandra_OS-LTR 764 0.0353 (102/2887) 0 * * Os_TE_418341 Chr3 3441787 3441786 - INDITTO 263 0.6691 (1988/2971) 0 * * Os_TE_418317 Chr3 3434300 3434301 - ORSgTETNOOT00053 263 0.0010 (3/2991) 0 * Os_TE_418316 Os_TE_418316 Chr3 3434298 3434297 - INDITTO 263 0.0010 (3/2995) 0 * Os_TE_418317 Os_TE_418315 Chr3 3433192 3433193 + SZ-37_LTR 12001 0.0013 (4/2998) 0 * Os_TE_418314 Os_TE_418314 Chr3 3433188 3433187 - SZ-37_LTR 12001 0.0020 (6/2999) 0 * Os_TE_418315 Os_TE_418302 Chr3 3427550 3427551 + TWIF 586 0.0003 (1/2946) 0 * * Os_TE_418299 Chr3 3426730 3426729 - HELITRON3_OS 12693 0.0007 (2/2993) 0 * Os_TE_418298 Os_TE_418298 Chr3 3426729 3426730 + HELITRON3_OS 12693 0.0007 (2/2996) 0 * Os_TE_418299 Os_TE_418292 Chr3 3414456 3414455 - STOWAWAY51_OS 246 0.0007 (2/2953) 0 * Os_TE_418291 Os_TE_418291 Chr3 3414450 3414451 + STOWAWAY51_OS 246 0.0003 (1/2957) 0 * Os_TE_418292 Os_TE_418226 Chr3 3395611 3395612 - SZ-35LTR 3853 0.0007 (2/2956) 0 * Os_TE_418225 Os_TE_418225 Chr3 3395607 3395606 + RETROSAT4_LTR 13504 0.0007 (2/2956) 0 * Os_TE_418226 Os_TE_418224 Chr3 3395198 3391472 + RETROSAT4_LTR 13504 0.3132 (862/2752) 1 Solo_LTR Os_TE_418221 Os_TE_418221 Chr3 3391472 3395198 - SZ-35LTR 3853 0.3375 (980/2904) 1 Intact Os_TE_418224 Os_TE_418211 Chr3 3387598 3387599 - RIREX_LTR 8828 0.0040 (12/2988) 0 * * Os_TE_418197 Chr3 3383944 3383945 - TYPEM 227 0.0068 (20/2935) 0 * Os_TE_418196 Os_TE_418196 Chr3 3383943 3383942 - ORSgTEMT02400179 221 0.0068 (20/2940) 0 * Os_TE_418197 Os_TE_418195 Chr3 3383785 3383786 - MuDR4_OS 7610 0.0003 (1/2981) 0 * Os_TE_418194 Os_TE_418194 Chr3 3383779 3383778 - MuDR4_OS 7610 0.0003 (1/2980) 0 * Os_TE_418195 Os_TE_418192 Chr3 3383214 3383215 + FOCUS 257 0.0003 (1/2983) 0 * Os_TE_418191 Os_TE_418191 Chr3 3383212 3383211 - FOCUS 257 0.0003 (1/2984) 0 * Os_TE_418192 Os_TE_418189 Chr3 3382751 3382752 - COPIA2-LTR_OS 6433 0.0040 (12/2991) 0 * Os_TE_418188 Os_TE_418188 Chr3 3382747 3382746 + COPIA2-LTR_OS 6433 0.0040 (12/2989) 0 * Os_TE_418189 Os_TE_418155 Chr3 3370476 3370265 + STOWAWAY21_OS 243 0.4043 (1158/2864) 1 Intact * Os_TE_418149 Chr3 3369301 3369300 + STOWAWAY51_OS 246 0.0003 (1/2999) 0 * Os_TE_418148 Os_TE_418148 Chr3 3369295 3369296 - STOWAWAY51_OS 246 0.0003 (1/2999) 0 * Os_TE_418149 Os_TE_418126 Chr3 3360582 3360583 - OLO24 345 0.0003 (1/2987) 0 * Os_TE_418125 Os_TE_418125 Chr3 3360580 3360579 + OLO24 345 0.0003 (1/2983) 0 * Os_TE_418126 Os_TE_418123 Chr3 3356513 3356514 + ORSiTERTOOT00296 5553 0.0003 (1/2993) 0 * Os_TE_418122 Os_TE_418122 Chr3 3356509 3356508 - SC-3_LTR 5748 0.0003 (1/2990) 0 * Os_TE_418123 Os_TE_418091 Chr3 3345840 3345841 + ORSgTETNOOT00908 242 0.0013 (4/2990) 0 * * Os_TE_418080 Chr3 3341649 3341420 + ORSgTEMT01602051 240 0.4413 (1304/2955) -1 Intact Os_TE_418079 Os_TE_418079 Chr3 3341420 3341633 - ORSgTEMT01600520 239 0.4446 (1325/2980) 1 Intact Os_TE_418080 Os_TE_418058 Chr3 3333567 3333568 + ORSiCMCM00100019 2717 0.0003 (1/2998) 0 * * Os_TE_418032 Chr3 3328074 3328075 - MPING 430 0.0109 (30/2760) 0 * * Os_TE_418030 Chr3 3327453 3327454 + RETRO1_LTR 8314 0.0003 (1/2918) 0 * * Os_TE_418025 Chr3 3326243 3326242 - STOWAWAY44_OS 240 0.0003 (1/2918) 0 * * Os_TE_418013 Chr3 3322657 3322658 - HARB-1_OS 5166 0.0100 (30/2987) 0 * Os_TE_418012 Os_TE_418012 Chr3 3322655 3322654 + HARB-1_OS 5166 0.0097 (29/2987) 0 * Os_TE_418013 Os_TE_418000 Chr3 3317046 3317047 + ORSiCMCM00100019 2717 0.0017 (5/2997) 0 * Os_TE_417999 Os_TE_417999 Chr3 3317042 3317041 - TRUNCATOR2_LTR 2904 0.0020 (6/2998) 0 * Os_TE_418000 Os_TE_417981 Chr3 3313206 3313205 + COPIO_LTR 11693 0.0003 (1/2869) 0 * * Os_TE_417977 Chr3 3312498 3312499 - COPIA2-LTR_OS 6433 0.0013 (4/2971) 0 * Os_TE_417976 Os_TE_417976 Chr3 3312494 3312493 + COPIA2-LTR_OS 6433 0.0013 (4/2974) 0 * Os_TE_417977 Os_TE_417971 Chr3 3309736 3309737 - INDITTO 263 0.0010 (3/2991) 0 * Os_TE_417970 Os_TE_417970 Chr3 3309734 3309733 + INDITTO 263 0.0010 (3/2992) 0 * Os_TE_417971 Os_TE_417950 Chr3 3295391 3308391 - RETRO2_LTR 12874 0.5286 (1580/2989) 1 Intact * Os_TE_417949 Chr3 3294662 3289790 - Hopscotch_LTR 4876 0.5277 (1581/2996) 1 Intact Os_TE_417947 Os_TE_417947 Chr3 3289790 3294662 + Hopscotch_LTR 4876 0.5262 (1578/2999) 1 Intact Os_TE_417949 Os_TE_417926 Chr3 3282430 3282431 + ORSgTEMT01702017 149 0.0074 (22/2991) 0 * * Os_TE_417882 Chr3 3256593 3256592 + ORSgTETN00100072 209 0.0003 (1/2980) 0 * * Os_TE_417842 Chr3 3242639 3242638 + TWIFB1 3737 0.0020 (6/2974) 0 * * Os_TE_417841 Chr3 3241801 3241800 + ORSgTEMT01600120 242 0.0003 (1/2990) 0 * Os_TE_417840 Os_TE_417840 Chr3 3241794 3241795 + ORSgTEMT01601591 242 0.0003 (1/2990) 0 * Os_TE_417841 Os_TE_417833 Chr3 3235461 3235460 - ORSgTERT00100189 275 0.0003 (1/2989) 0 * * Os_TE_417831 Chr3 3234345 3234346 + ORSiTERTOOT00296 5553 0.0007 (2/2998) 0 * Os_TE_417830 Os_TE_417830 Chr3 3234341 3234340 - SC-3_LTR 5748 0.0007 (2/2998) 0 * Os_TE_417831 Os_TE_417829 Chr3 3233868 3233869 + ORSiTERTOOT00296 5553 0.0003 (1/2991) 0 * * Os_TE_417775 Chr3 3215736 3215737 + SC-8_LTR 4951 0.0003 (1/2984) 0 * Os_TE_417774 Os_TE_417774 Chr3 3215732 3215731 - SC-8_LTR 4951 0.0003 (1/2983) 0 * Os_TE_417775 Os_TE_417764 Chr3 3208458 3208457 - CASTAWAY 364 0.0060 (18/2990) 0 * * Os_TE_417745 Chr3 3198471 3198470 + STOWAWAY44_OS 240 0.0003 (1/2992) 0 * * Os_TE_417738 Chr3 3193963 3193964 + SC-8_LTR 4951 0.0073 (22/2994) 0 * Os_TE_417737 Os_TE_417737 Chr3 3193959 3193958 - SC-8_LTR 4951 0.0073 (22/2996) 0 * Os_TE_417738 Os_TE_417707 Chr3 3178070 3178069 - ORSgTEMT01400006 213 0.0020 (6/2997) 0 * Os_TE_417706 Os_TE_417706 Chr3 3178069 3178070 + STOWAWAY9_OS 235 0.0020 (6/2999) 0 * Os_TE_417707 Os_TE_417701 Chr3 3175479 3175480 + ORSiTERTOOT00296 5553 0.0311 (93/2991) 0 * Os_TE_417700 Os_TE_417700 Chr3 3175475 3175474 - SC-3_LTR 5748 0.0314 (94/2994) 0 * Os_TE_417701 Os_TE_417699 Chr3 3175266 3175267 - SC-3_LTR 5748 0.0033 (10/2995) 0 * Os_TE_417698 Os_TE_417698 Chr3 3175262 3175261 + ORSiTERTOOT00296 5553 0.0033 (10/2996) 0 * Os_TE_417699 Os_TE_417644 Chr3 3126216 3126217 + INDITTO 263 0.0007 (2/2998) 0 * Os_TE_417643 Os_TE_417643 Chr3 3126214 3126213 - INDITTO 263 0.0007 (2/2997) 0 * Os_TE_417644 Os_TE_417642 Chr3 3125917 3125918 - INDITTO 263 0.0033 (10/2998) 0 * Os_TE_417641 Os_TE_417641 Chr3 3125915 3125914 + INDITTO 263 0.0033 (10/2998) 0 * Os_TE_417642 Os_TE_417621 Chr3 3102486 3102487 + RETRO1_LTR 8314 0.0010 (3/2919) 0 * * Os_TE_417615 Chr3 3094250 3094249 - SC-3_LTR 5748 0.0013 (4/2987) 0 * * Os_TE_417612 Chr3 3091222 3091223 - HARB-1_OS 5166 0.0031 (9/2926) 0 * Os_TE_417611 Os_TE_417611 Chr3 3091220 3091219 + HARB-1_OS 5166 0.0027 (8/2932) 0 * Os_TE_417612 Os_TE_417610 Chr3 3090979 3090646 + NDNA1TNA_OS 334 0.3229 (955/2958) 1 Intact Os_TE_417609 Os_TE_417609 Chr3 3090644 3090964 + ORSgTEMT00100531 325 0.3228 (963/2983) 1 Intact Os_TE_417610 Os_TE_417601 Chr3 3087869 3087868 - ORSiTERTOOT00441 4741 0.0003 (1/2993) 0 * * Os_TE_417578 Chr3 3081186 3077044 + TOUNJ-30 377 0.3230 (967/2994) 1 Intact Os_TE_417577 Os_TE_417577 Chr3 3077044 3081184 - TOUNJ-30 377 0.3212 (961/2992) 1 Intact Os_TE_417578 Os_TE_417559 Chr3 3067464 3067465 - COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_417558 Os_TE_417558 Chr3 3067460 3067459 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_417559 Os_TE_417512 Chr3 3038375 3038376 - ORSgTEMT00101144 336 0.0397 (119/2994) 0 * * Os_TE_417504 Chr3 3036292 3036293 - ORSgTETNOOT00754 253 0.0023 (7/2998) 0 * Os_TE_417503 Os_TE_417503 Chr3 3036290 3036289 + ORSgTETNOOT01834 251 0.0020 (6/2994) 0 * Os_TE_417504 Os_TE_417435 Chr3 3005542 3005541 + RPO_OS 1983 0.0020 (6/2993) 0 * * Os_TE_417433 Chr3 3003993 3003992 - TNR2A 152 0.0017 (5/2998) 0 * * Os_TE_417428 Chr3 3002176 3002177 - TYPEU1 380 0.0013 (4/2987) 0 * * Os_TE_417422 Chr3 2997488 2996645 + Cassandra_OS-LTR 764 0.3257 (968/2972) 1 Intact Os_TE_417416 Os_TE_417416 Chr3 2996645 2997488 - Cassandra_OS-LTR 764 0.3284 (978/2978) 1 Intact Os_TE_417422 Os_TE_417415 Chr3 2996174 2996175 - GYPSY-A_LTR 8951 0.0023 (7/2995) 0 * Os_TE_417414 Os_TE_417414 Chr3 2996170 2996169 + GYPSY-A_LTR 8951 0.0023 (7/2994) 0 * Os_TE_417415 Os_TE_417413 Chr3 2995600 2995601 - RIREX_LTR 8828 0.0003 (1/2979) 0 * Os_TE_417412 Os_TE_417412 Chr3 2995596 2995595 + RIREX_LTR 8828 0.0003 (1/2978) 0 * Os_TE_417413 Os_TE_417372 Chr3 2967796 2967795 - RETROFIT_LTR 4866 0.0003 (1/2993) 0 * * Os_TE_417352 Chr3 2958673 2958674 - RIREX_LTR 8828 0.0023 (7/2992) 0 * Os_TE_417351 Os_TE_417351 Chr3 2958669 2958668 + RIREX_LTR 8828 0.0023 (7/2992) 0 * Os_TE_417352 Os_TE_417294 Chr3 2935796 2935797 + RETROSAT4_LTR 13504 0.0017 (5/2953) 0 * * Os_TE_417250 Chr3 2914471 2914470 + QINNIU 528 0.0023 (7/2979) 0 * * Os_TE_417243 Chr3 2912725 2912726 - ORSgTEMT02000041 194 0.0003 (1/2987) 0 * * Os_TE_417237 Chr3 2909312 2909313 + SC-8_LTR 4951 0.0020 (6/2986) 0 * Os_TE_417236 Os_TE_417236 Chr3 2909308 2909307 - SC-8_LTR 4951 0.0020 (6/2992) 0 * Os_TE_417237 Os_TE_417201 Chr3 2894673 2894674 - RETRO1_LTR 8314 0.6206 (1752/2823) 0 * * Os_TE_417195 Chr3 2887952 2894357 - MuDR4_OS 7610 0.4287 (772/1801) 1 Intact * Os_TE_417161 Chr3 2878397 2878396 - AMYLTP 383 0.0414 (124/2995) 0 * * Os_TE_417149 Chr3 2875407 2875406 + ORSgTEMT00901021 210 0.0003 (1/2991) 0 * * Os_TE_417145 Chr3 2873658 2873659 + SC-8_LTR 4951 0.0003 (1/2979) 0 * Os_TE_417144 Os_TE_417144 Chr3 2873654 2873653 - SC-8_LTR 4951 0.0003 (1/2979) 0 * Os_TE_417145 Os_TE_417109 Chr3 2862148 2862149 + RIREX_LTR 8828 0.0003 (1/2992) 0 * Os_TE_417108 Os_TE_417108 Chr3 2862144 2862143 - RIREX_LTR 8828 0.0003 (1/2993) 0 * Os_TE_417109 Os_TE_417074 Chr3 2832397 2831388 - RETRO2_LTR 12874 0.3388 (969/2860) 1 Solo_LTR Os_TE_417072 Os_TE_417072 Chr3 2831388 2832397 + RETRO2_LTR 12874 0.3130 (868/2773) 1 Solo_LTR Os_TE_417074 Os_TE_417067 Chr3 2830692 2830693 - RETRO1_LTR 8314 0.0007 (2/2950) 0 * * Os_TE_417058 Chr3 2828191 2828192 - STOWAWAY9_OS 235 0.0005 (1/1951) 0 * * Os_TE_417027 Chr3 2809833 2809834 - INDITTO 263 0.6422 (1922/2993) 0 * Os_TE_417026 Os_TE_417026 Chr3 2809831 2809830 + INDITTO 263 0.6394 (1908/2984) 0 * Os_TE_417027 Os_TE_417020 Chr3 2806357 2806358 - HATORY 3570 0.0010 (3/2952) 0 * Os_TE_417019 Os_TE_417019 Chr3 2806348 2806347 + HATORY 3570 0.0010 (3/2940) 0 * Os_TE_417020 Os_TE_417003 Chr3 2800817 2800818 - COPIA2-LTR_OS 6433 0.0097 (29/2997) 0 * Os_TE_417002 Os_TE_417002 Chr3 2800813 2800812 + COPIA2-LTR_OS 6433 0.0100 (30/2998) 0 * Os_TE_417003 Os_TE_417000 Chr3 2799976 2799975 + CACTA-B 1103 0.0003 (1/2960) 0 * Os_TE_416999 Os_TE_416999 Chr3 2799975 2799976 - CACTA-H 1152 0.0003 (1/2958) 0 * Os_TE_417000 Os_TE_416975 Chr3 2794703 2794704 - MPING 430 0.0003 (1/2988) 0 * Os_TE_416974 Os_TE_416974 Chr3 2794701 2794700 + MPING 430 0.0003 (1/2980) 0 * Os_TE_416975 Os_TE_416967 Chr3 2792719 2792718 + SZ-40LTR 2465 0.0212 (23/1086) 0 * * Os_TE_416937 Chr3 2783231 2780830 - RETROSAT4_LTR 13504 0.3268 (977/2990) 1 Intact * Os_TE_416930 Chr3 2779778 2779777 - OSTE20 496 0.6589 (1916/2908) 0 * * Os_TE_416890 Chr3 2764089 2764090 + COPI2_LTR 4733 0.0003 (1/2989) 0 * Os_TE_416889 Os_TE_416889 Chr3 2764085 2764084 - COPI2_LTR 4733 0.0003 (1/2986) 0 * Os_TE_416890 Os_TE_416888 Chr3 2763257 2763258 - SC-3_LTR 5748 0.0023 (7/2999) 0 * Os_TE_416887 Os_TE_416887 Chr3 2763253 2763252 + ORSiTERTOOT00296 5553 0.0023 (7/2998) 0 * Os_TE_416888 Os_TE_416853 Chr3 2747796 2747797 + INDITTO 263 0.0778 (232/2983) 0 * * Os_TE_416852 Chr3 2747794 2747793 - INDITTO 263 0.0326 (97/2980) 0 * * Os_TE_416828 Chr3 2742096 2742097 + NDNA1TNA_OS 334 0.0005 (1/2129) 0 * * Os_TE_416789 Chr3 2722208 2722209 + ORSgTEMT00501339 144 0.0004 (1/2538) 0 * * Os_TE_416780 Chr3 2716458 2716459 + RETRO2_LTR 12874 0.0007 (2/2990) 0 * * Os_TE_416768 Chr3 2709720 2709721 - TYPEM 227 0.0003 (1/2998) 0 * Os_TE_416767 Os_TE_416767 Chr3 2709719 2709718 - ORSgTEMT02400179 221 0.0003 (1/2992) 0 * Os_TE_416768 Os_TE_416739 Chr3 2704181 2704182 + RETROSAT3_LTR 11537 0.0003 (1/2998) 0 * Os_TE_416738 Os_TE_416738 Chr3 2704177 2704176 - RETROSAT2LTRA 3112 0.0003 (1/2997) 0 * Os_TE_416739 Os_TE_416735 Chr3 2703364 2703365 + MPING 430 0.0003 (1/2985) 0 * Os_TE_416734 Os_TE_416734 Chr3 2703362 2703361 - MPING 430 0.0003 (1/2986) 0 * Os_TE_416735 Os_TE_416724 Chr3 2701085 2701086 - ORSiTETNOOT00134 607 0.0057 (17/2977) 0 * Os_TE_416723 Os_TE_416723 Chr3 2701078 2701077 + TWIF 586 0.0047 (14/2974) 0 * Os_TE_416724 Os_TE_416690 Chr3 2693875 2692659 + SETARIA2 1142 0.3035 (888/2926) 1 Intact Os_TE_416688 Os_TE_416688 Chr3 2692659 2693873 + SETARIA2 1142 0.3041 (889/2923) 1 Intact Os_TE_416690 Os_TE_416662 Chr3 2688592 2688593 + COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * Os_TE_416661 Os_TE_416661 Chr3 2688588 2688587 - COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_416662 Os_TE_416644 Chr3 2674631 2674632 + COPI2_LTR 4733 0.0003 (1/2993) 0 * * Os_TE_416641 Chr3 2674158 2674159 + STOWAWAY51_OS 246 0.0010 (3/2996) 0 * * Os_TE_416624 Chr3 2670695 2670696 + AMYLTP 383 0.0014 (4/2922) 0 * Os_TE_416623 Os_TE_416623 Chr3 2670686 2670685 - AMYLTP 383 0.0017 (5/2921) 0 * Os_TE_416624 Os_TE_416602 Chr3 2658580 2658581 - ORSgTETNOOT00053 263 0.0007 (2/2978) 0 * Os_TE_416601 Os_TE_416601 Chr3 2658578 2658577 - INDITTO 263 0.0007 (2/2978) 0 * Os_TE_416602 Os_TE_416573 Chr3 2642608 2642609 - RIREX_LTR 8828 0.0040 (12/2997) 0 * Os_TE_416572 Os_TE_416572 Chr3 2642604 2642603 + RIREX_LTR 8828 0.0043 (13/2996) 0 * Os_TE_416573 Os_TE_416562 Chr3 2637947 2637946 - F524 291 0.0031 (3/978) 0 * * Os_TE_416561 Chr3 2630160 2630161 + MuDR2_OS 6770 0.0170 (45/2652) 0 * * Os_TE_416545 Chr3 2624644 2624645 + RETROSAT4_LTR 13504 0.0007 (2/2991) 0 * Os_TE_416544 Os_TE_416544 Chr3 2624640 2624639 - SZ-35LTR 3853 0.0007 (2/2991) 0 * Os_TE_416545 Os_TE_416543 Chr3 2619082 2624310 + ORSiTERTOOT00023 5086 0.3485 (1043/2993) 1 Intact * Os_TE_416542 Chr3 2616688 2616689 - SC-3_LTR 5748 0.0013 (4/2996) 0 * * Os_TE_416492 Chr3 2591538 2591537 + ORSgTEMT01700715 134 0.0003 (1/2976) 0 * * Os_TE_416463 Chr3 2581033 2581034 + MPING 430 0.0007 (2/2953) 0 * Os_TE_416462 Os_TE_416462 Chr3 2581031 2581030 - MPING 430 0.0007 (2/2960) 0 * Os_TE_416463 Os_TE_416461 Chr3 2580998 2580999 + MDR2 6967 0.0031 (9/2899) 0 * Os_TE_416460 Os_TE_416460 Chr3 2580989 2580988 - MDR2 6967 0.0030 (9/2977) 0 * Os_TE_416461 Os_TE_416454 Chr3 2576479 2575876 + TWIF 586 0.0574 (172/2995) 1 Intact Os_TE_416453 Os_TE_416453 Chr3 2575873 2576479 - ORSiTETNOOT00134 607 0.0572 (171/2992) 1 Intact Os_TE_416454 Os_TE_416425 Chr3 2566620 2566621 - RETROSAT2LTR 12796 0.0003 (1/2961) 0 * * Os_TE_416420 Chr3 2562263 2562262 - STOWAWAY51_OS 246 0.0251 (75/2990) 0 * Os_TE_416419 Os_TE_416419 Chr3 2562260 2562261 - STOWAWAY51_OS 246 0.0258 (77/2984) 0 * Os_TE_416420 Os_TE_416418 Chr3 2562184 2562183 + ORSgTEMT01601591 242 0.0007 (2/2966) 0 * * Os_TE_416401 Chr3 2553374 2553375 + RIREX_LTR 8828 0.0007 (2/2990) 0 * Os_TE_416400 Os_TE_416400 Chr3 2553370 2553369 - RIREX_LTR 8828 0.0003 (1/2993) 0 * Os_TE_416401 Os_TE_416396 Chr3 2551402 2551401 + ORSiTERTOOT00226 792 0.0020 (6/2994) 0 * * Os_TE_416395 Chr3 2550827 2550826 + ORSgTEMT01601591 242 0.0010 (3/2988) 0 * Os_TE_416394 Os_TE_416394 Chr3 2550821 2550822 + STOWAWAY51_OS 246 0.0013 (4/2986) 0 * Os_TE_416395 Os_TE_416370 Chr3 2534063 2534062 - ORSiRGRR00000001 280 0.6834 (2003/2931) 0 * * Os_TE_416361 Chr3 2528219 2528218 + STOWAWAY9_OS 235 0.0007 (2/2993) 0 * * Os_TE_416360 Chr3 2527980 2527981 - INDITTO 263 0.0003 (1/2996) 0 * * Os_TE_416354 Chr3 2527092 2527091 + STOWAWAY51_OS 246 0.0003 (1/2985) 0 * * Os_TE_416331 Chr3 2507843 2507844 - RIREX_LTR 8828 0.0007 (2/2997) 0 * Os_TE_416330 Os_TE_416330 Chr3 2507839 2507838 + RIREX_LTR 8828 0.0007 (2/2998) 0 * Os_TE_416331 Os_TE_416325 Chr3 2503542 2503543 + SZ-4_LTR 5991 0.0003 (1/2980) 0 * Os_TE_416324 Os_TE_416324 Chr3 2503538 2503537 - SZ-4_LTR 5991 0.0003 (1/2983) 0 * Os_TE_416325 Os_TE_416321 Chr3 2502833 2502832 + COPI2_LTR 4733 0.0003 (1/2996) 0 * * Os_TE_416315 Chr3 2500896 2500897 - OSTE33 1012 0.0003 (1/2988) 0 * * Os_TE_416267 Chr3 2481011 2481010 - TRUNCATOR2_LTR 2904 0.0268 (80/2983) 0 * * Os_TE_416240 Chr3 2470066 2470067 - INDITTO 263 0.0003 (1/2987) 0 * Os_TE_416239 Os_TE_416239 Chr3 2470064 2470063 + INDITTO 263 0.0003 (1/2985) 0 * Os_TE_416240 Os_TE_416233 Chr3 2463810 2463811 + SZ-9LTR 965 0.0003 (1/2982) 0 * Os_TE_416232 Os_TE_416232 Chr3 2463806 2463805 - SZ-9LTR 965 0.0003 (1/2983) 0 * Os_TE_416233 Os_TE_416218 Chr3 2459589 2459588 - DS-RICE2N 613 0.0020 (6/2984) 0 * * Os_TE_416205 Chr3 2442895 2442896 - SC-3_LTR 5748 0.0003 (1/2980) 0 * Os_TE_416204 Os_TE_416204 Chr3 2442891 2442890 + ORSiTERTOOT00296 5553 0.0003 (1/2980) 0 * Os_TE_416205 Os_TE_416197 Chr3 2438413 2438414 - SC-8_LTR 4951 0.0003 (1/2969) 0 * Os_TE_416196 Os_TE_416196 Chr3 2438409 2438408 + SC-8_LTR 4951 0.0003 (1/2969) 0 * Os_TE_416197 Os_TE_416187 Chr3 2431615 2431616 - ORSgTETNOOT00754 253 0.0010 (3/2997) 0 * Os_TE_416186 Os_TE_416186 Chr3 2431613 2431612 + ORSgTETNOOT01834 251 0.0010 (3/2995) 0 * Os_TE_416187 Os_TE_416176 Chr3 2420860 2420650 + ORSgTEMT01601122 212 0.3028 (887/2929) 1 Intact Os_TE_416174 Os_TE_416174 Chr3 2420624 2420858 + STOWAWAY21_OS 243 0.3139 (933/2972) 1 Intact Os_TE_416176 Os_TE_416172 Chr3 2419884 2419885 + ORSiTERTOOT00402 2660 0.0003 (1/2998) 0 * Os_TE_416171 Os_TE_416171 Chr3 2419880 2419879 - ORSiTERTOOT00402 2660 0.0003 (1/2996) 0 * Os_TE_416172 Os_TE_416166 Chr3 2414584 2414585 + RIREX_LTR 8828 0.0013 (4/2990) 0 * Os_TE_416165 Os_TE_416165 Chr3 2414580 2414579 - RIREX_LTR 8828 0.0013 (4/2990) 0 * Os_TE_416166 Os_TE_416163 Chr3 2413666 2413665 - STOWAWAY51_OS 246 0.0003 (1/2999) 0 * Os_TE_416162 Os_TE_416162 Chr3 2413663 2413664 - STOWAWAY51_OS 246 0.0003 (1/2999) 0 * Os_TE_416163 Os_TE_416154 Chr3 2408975 2408974 - COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * * Os_TE_416135 Chr3 2396738 2396737 - STOWAWAY51_OS 246 0.0003 (1/2981) 0 * * Os_TE_416134 Chr3 2396142 2396141 + ORSgTETNOOT01668 244 0.0003 (1/2958) 0 * * Os_TE_416127 Chr3 2395375 2395374 - OSLINE1-2 7128 0.0007 (2/2977) 0 * * Os_TE_416121 Chr3 2394359 2394358 - NDNA1TNA_OS 334 0.0007 (2/2993) 0 * Os_TE_416120 Os_TE_416120 Chr3 2394354 2394355 + NDNA1TNA_OS 334 0.0007 (2/2993) 0 * Os_TE_416121 Os_TE_416115 Chr3 2391137 2391136 - ORSgTETNOOT01360 100 0.8789 (2635/2998) 0.93 * * Os_TE_416114 Chr3 2391122 2391123 - SZ-9LTR 965 0.1306 (391/2995) 0 * Os_TE_416113 Os_TE_416113 Chr3 2391118 2391117 + SZ-9LTR 965 0.1286 (385/2994) 0 * Os_TE_416114 Os_TE_416109 Chr3 2386529 2386530 + ORSgTETNOOT01834 251 0.0003 (1/2999) 0 * * Os_TE_416105 Chr3 2381606 2381605 - SZ-35LTR 3853 0.0003 (1/2869) 0 * * Os_TE_416084 Chr3 2374953 2374954 + ORSgTEMT00300063 413 0.0003 (1/2998) 0 * * Os_TE_416078 Chr3 2366896 2366897 + COPIA2-LTR_OS 6433 0.0003 (1/2958) 0 * Os_TE_416077 Os_TE_416077 Chr3 2366892 2366891 - COPIA2-LTR_OS 6433 0.0003 (1/2874) 0 * Os_TE_416078 Os_TE_416044 Chr3 2353886 2353887 + STOWAWAY50_OS 174 0.0040 (11/2767) 0 * * Os_TE_416040 Chr3 2350439 2350440 - MuDR3_OS 8604 0.0007 (2/2988) 0 * Os_TE_416039 Os_TE_416039 Chr3 2350431 2350430 + MuDR3_OS 8604 0.0007 (2/2991) 0 * Os_TE_416040 Os_TE_416031 Chr3 2349034 2349035 - MuDR4_OS 7610 0.0007 (2/2987) 0 * Os_TE_416030 Os_TE_416030 Chr3 2349028 2349027 - MuDR4_OS 7610 0.0003 (1/2988) 0 * Os_TE_416031 Os_TE_416029 Chr3 2348512 2348513 - COPI2_LTR 4733 0.0003 (1/2983) 0 * Os_TE_416028 Os_TE_416028 Chr3 2348508 2348507 + COPI2_LTR 4733 0.0003 (1/2985) 0 * Os_TE_416029 Os_TE_416017 Chr3 2346831 2346832 - HATOS1 3488 0.0007 (2/2991) 0 * Os_TE_416016 Os_TE_416016 Chr3 2346824 2346823 + QINNIU 528 0.0007 (2/2991) 0 * Os_TE_416017 Os_TE_416014 Chr3 2346232 2346231 + SZ-48LTR 3632 0.0007 (2/2950) 0 * * Os_TE_416012 Chr3 2346027 2346026 + RETRO2_LTR 12874 0.0030 (9/2976) 0 * * Os_TE_416011 Chr3 2345899 2345900 + RIREX_LTR 8828 0.0007 (2/2982) 0 * Os_TE_416010 Os_TE_416010 Chr3 2345895 2345894 - RIREX_LTR 8828 0.0007 (2/2986) 0 * Os_TE_416011 Os_TE_416000 Chr3 2341704 2341705 - Cassandra_OS-LTR 764 0.6646 (1989/2993) 0 * Os_TE_415999 Os_TE_415999 Chr3 2341700 2341699 + Cassandra_OS-LTR 764 0.6669 (1998/2996) 0 * Os_TE_416000 Os_TE_415988 Chr3 2336389 2336390 - STOWAWAY51_OS 246 0.0003 (1/2989) 0 * * Os_TE_415950 Chr3 2311518 2311519 - NDNA2TNA_OS 346 0.0243 (72/2964) 0 * Os_TE_415949 Os_TE_415949 Chr3 2311516 2311515 + NDNA2TNA_OS 346 0.0708 (73/1031) 0 * Os_TE_415950 Os_TE_415948 Chr3 2311511 2311512 - NDNA2TNA_OS 346 0.0279 (83/2977) 0 * * Os_TE_415931 Chr3 2309201 2309202 - RETROSAT4_LTR 13504 0.6978 (2057/2948) 0 * Os_TE_415930 Os_TE_415930 Chr3 2309197 2309196 + RETROSAT4_LTR 13504 0.6839 (1967/2876) 0 * Os_TE_415931 Os_TE_415926 Chr3 2308808 2308809 + STOWAWAY15-2_OS 145 0.0010 (3/2883) 0 * * Os_TE_415902 Chr3 2301947 2301948 - ORSgTETNOOT02000 263 0.2092 (411/1965) 0 * * Os_TE_415901 Chr3 2301774 2301775 - MPING 430 0.0094 (24/2548) 0 * * Os_TE_415897 Chr3 2300624 2300623 + FOCUS 257 0.0004 (1/2709) 0 * Os_TE_415896 Os_TE_415896 Chr3 2300622 2300623 - FOCUS 257 0.0004 (1/2714) 0 * Os_TE_415897 Os_TE_415892 Chr3 2296698 2296699 + ORSgTETNOOT01686 252 0.0017 (5/2988) 0 * Os_TE_415891 Os_TE_415891 Chr3 2296694 2296693 + ORSgTETNOOT01531 255 0.0017 (5/2988) 0 * Os_TE_415892 Os_TE_415842 Chr3 2276620 2276619 - TRUNCATOR2_LTR 2904 0.0007 (2/2995) 0 * * Os_TE_415841 Chr3 2274551 2274552 + NDNA1TNA_OS 334 0.3309 (988/2986) 0 * Os_TE_415840 Os_TE_415840 Chr3 2274550 2274549 - NDNA1TNA_OS 334 0.3358 (1005/2993) 0 * Os_TE_415841 Os_TE_415838 Chr3 2271917 2267718 + ORSgTETNOOT01834 251 0.3137 (934/2977) 1 Intact Os_TE_415837 Os_TE_415837 Chr3 2267718 2271917 - TOUNJ-30 377 0.3143 (936/2978) 1 Intact Os_TE_415838 Os_TE_415825 Chr3 2263495 2263494 - COPI2_LTR 4733 0.0003 (1/2997) 0 * * Os_TE_415812 Chr3 2259967 2259966 - NDNA1TNA_OS 334 0.0007 (2/2975) 0 * Os_TE_415811 Os_TE_415811 Chr3 2259952 2259953 + NDNA1TNA_OS 334 0.0007 (2/2961) 0 * Os_TE_415812 Os_TE_415806 Chr3 2259389 2259390 - COPIA2-LTR_OS 6433 0.0003 (1/2984) 0 * * Os_TE_415794 Chr3 2250461 2250462 + ORSgTETNOOT01028 232 0.0003 (1/2991) 0 * * Os_TE_415755 Chr3 2230798 2230536 - INDITTO 263 0.3139 (940/2995) 1 Intact Os_TE_415751 Os_TE_415751 Chr3 2230536 2230798 + INDITTO 263 0.3131 (938/2996) 1 Intact Os_TE_415755 Os_TE_415738 Chr3 2222413 2222414 - ENSPM4_OS 11610 0.0010 (3/2991) 0 * * Os_TE_415720 Chr3 2218856 2218855 - OSTE24 683 0.0003 (1/2986) 0 * * Os_TE_415681 Chr3 2202880 2202879 - ORSgTEMT00100799 337 0.0030 (9/2990) 0 * Os_TE_415680 Os_TE_415680 Chr3 2202879 2202880 + NDNA1TNA_OS 334 0.0027 (8/2989) 0 * Os_TE_415681 Os_TE_415668 Chr3 2198040 2198039 - RETROSAT2LTR 12796 0.3713 (1108/2984) 0 * * Os_TE_415637 Chr3 2189313 2189314 + ORSgTEMT00600272 361 0.0314 (94/2995) 0 * Os_TE_415636 Os_TE_415636 Chr3 2189308 2189307 + ORSgTEMT00600376 329 0.0297 (89/2994) 0 * Os_TE_415637 Os_TE_415634 Chr3 2189151 2189150 - SZ-25LTR 330 0.0020 (6/2997) 0 * * Os_TE_415632 Chr3 2188813 2188812 + RETROSAT4_LTR 13504 0.4355 (1304/2994) 0 * * Os_TE_415607 Chr3 2185178 2185177 - ORSgTEMT02400246 177 0.0003 (1/2984) 0 * Os_TE_415606 Os_TE_415606 Chr3 2185177 2185178 - TYPEM 227 0.0003 (1/2974) 0 * Os_TE_415607 Os_TE_415587 Chr3 2178095 2178096 + SZ-48LTR 3632 0.0010 (3/2975) 0 * Os_TE_415586 Os_TE_415586 Chr3 2178091 2178090 - SZ-48LTR 3632 0.0007 (2/2975) 0 * Os_TE_415587 Os_TE_415584 Chr3 2177832 2177833 - MuDR2_OS 6770 0.3006 (888/2954) 0 * Os_TE_415583 Os_TE_415583 Chr3 2177824 2177823 + MuDR2_OS 6770 0.2850 (828/2905) 0 * Os_TE_415584 Os_TE_415582 Chr3 2177199 2173279 + RETROSAT4_LTR 13504 0.4194 (1212/2890) 1 Solo_LTR Os_TE_415576 Os_TE_415576 Chr3 2173282 2177199 - SZ-35LTR 3853 0.4305 (1269/2948) 1 Intact Os_TE_415582 Os_TE_415570 Chr3 2169796 2169797 + ORSgTETNOOT00908 242 0.0003 (1/2993) 0 * * Os_TE_415549 Chr3 2165667 2165668 - SNAP-OL3 189 0.0041 (3/734) -1 * * Os_TE_415547 Chr3 2165007 2165006 + ORSgTEMT01601591 242 0.0007 (2/2989) 0 * Os_TE_415546 Os_TE_415546 Chr3 2165001 2165002 + STOWAWAY51_OS 246 0.0007 (2/2983) 0 * Os_TE_415547 Os_TE_415545 Chr3 2164293 2164294 - SC-3_LTR 5748 0.0003 (1/2999) 0 * Os_TE_415544 Os_TE_415544 Chr3 2164289 2164288 + ORSiTERTOOT00296 5553 0.0003 (1/2999) 0 * Os_TE_415545 Os_TE_415543 Chr3 2163946 2163945 - STOWAWAY51_OS 246 0.0003 (1/2998) 0 * Os_TE_415542 Os_TE_415542 Chr3 2163940 2163941 + STOWAWAY51_OS 246 0.0003 (1/2998) 0 * Os_TE_415543 Os_TE_415541 Chr3 2163801 2163802 + COPIA2-LTR_OS 6433 0.0030 (9/2978) 0 * Os_TE_415540 Os_TE_415540 Chr3 2163797 2163796 - COPIA2-LTR_OS 6433 0.0030 (9/2995) 0 * Os_TE_415541 Os_TE_415516 Chr3 2153589 2153590 - MPING 430 0.0003 (1/2995) 0 * Os_TE_415515 Os_TE_415515 Chr3 2153587 2153586 + MPING 430 0.0003 (1/2996) 0 * Os_TE_415516 Os_TE_415498 Chr3 2139915 2139916 + TWIFBIG 3567 0.0007 (2/2791) 0 * Os_TE_415497 Os_TE_415497 Chr3 2139908 2139907 - ORSiTETNOOT00216 3569 0.0007 (2/2948) 0 * Os_TE_415498 Os_TE_415496 Chr3 2139894 2139895 - MuDR2_OS 6770 0.2551 (744/2916) 0 * Os_TE_415495 Os_TE_415495 Chr3 2139885 2139884 + MuDR2_OS 6770 0.2551 (743/2913) 0 * Os_TE_415496 Os_TE_415494 Chr3 2137349 2137348 + ORSgTETNOOT00908 242 0.0003 (1/2997) 0 * * Os_TE_415450 Chr3 2117097 2117098 + ORSgTEMT00300093 396 0.6131 (1838/2998) 0 * * Os_TE_415425 Chr3 2099143 2099144 + ORSiTERTOOT00381 4988 0.0003 (1/2993) 0 * Os_TE_415424 Os_TE_415424 Chr3 2099139 2099138 - SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_415425 Os_TE_415408 Chr3 2090364 2090363 + ORSiTERTOOT00296 5553 0.0003 (1/2994) 0 * * Os_TE_415399 Chr3 2084665 2084664 + ORSgTEMT01601591 242 0.0003 (1/2994) 0 * Os_TE_415398 Os_TE_415398 Chr3 2084659 2084660 + STOWAWAY51_OS 246 0.0003 (1/2998) 0 * Os_TE_415399 Os_TE_415389 Chr3 2083234 2083235 - RIRE2_LTR 11306 0.0007 (2/2977) 0 * Os_TE_415388 Os_TE_415388 Chr3 2083230 2083229 + RIRE2_LTR 11306 0.0007 (2/2978) 0 * Os_TE_415389 Os_TE_415387 Chr3 2083058 2083059 + INDITTO 263 0.0146 (41/2800) 0 * Os_TE_415386 Os_TE_415386 Chr3 2083056 2083055 - INDITTO 263 0.0157 (43/2742) 0 * Os_TE_415387 Os_TE_415371 Chr3 2079842 2079841 - TYPEM 227 0.0003 (1/2996) 0 * Os_TE_415370 Os_TE_415370 Chr3 2079841 2079842 - ORSgTEMT02400148 214 0.0003 (1/2995) 0 * Os_TE_415371 Os_TE_415367 Chr3 2078209 2078210 + ORSgTETNOOT01642 241 0.0007 (2/2998) 0 * Os_TE_415366 Os_TE_415366 Chr3 2078204 2078203 - ORSgTETNOOT02565 240 0.0010 (3/2998) 0 * Os_TE_415367 Os_TE_415341 Chr3 2064274 2064275 - ORSgTETNOOT02000 263 0.0003 (1/2994) 0 * Os_TE_415340 Os_TE_415340 Chr3 2064272 2064271 - INDITTO 263 0.0003 (1/2996) 0 * Os_TE_415341 Os_TE_415339 Chr3 2063330 2063331 + OSTE20 496 0.0004 (1/2674) 0 * * Os_TE_415324 Chr3 2054630 2054629 + DS-RICE4N 715 0.0003 (1/2960) 0 * * Os_TE_415322 Chr3 2054007 2054006 - STOWAWAY51_OS 246 0.0013 (4/2965) 0 * * Os_TE_415307 Chr3 2052015 2052014 - TYPEM 227 0.0007 (2/2993) 0 * * Os_TE_415282 Chr3 2048389 2048390 + ORSgTEMT01602181 239 0.0041 (4/980) 0 * * Os_TE_415281 Chr3 2048123 2048124 + TELIA 141 0.0003 (1/2998) 0 * Os_TE_415280 Os_TE_415280 Chr3 2048115 2048114 - TELIA 141 0.0003 (1/2998) 0 * Os_TE_415281 Os_TE_415272 Chr3 2045768 2045769 - OSTE33 1012 0.0140 (42/2993) 0 * Os_TE_415271 Os_TE_415271 Chr3 2045759 2045758 + OSTE33 1012 0.0121 (36/2985) 0 * Os_TE_415272 Os_TE_415269 Chr3 2045485 2045486 - ORSgTEMT02000041 194 0.0013 (4/2995) 0 * * Os_TE_415268 Chr3 2045481 2045480 - ORSgTEMT02000040 196 0.0170 (51/2997) 0 * * Os_TE_415255 Chr3 2043257 2043256 + TRUNCATOR 2918 0.0144 (43/2987) 0 * Os_TE_415254 Os_TE_415254 Chr3 2043256 2043257 - TRUNCATOR 2918 0.0131 (39/2987) 0 * Os_TE_415255 Os_TE_415249 Chr3 2041406 2041407 + TWIF 586 0.0007 (2/2998) 0 * Os_TE_415248 Os_TE_415248 Chr3 2041399 2041398 - ORSiTETNOOT00134 607 0.0010 (3/2998) 0 * Os_TE_415249 Os_TE_415231 Chr3 2033996 2033997 - RIREX_LTR 8828 0.0003 (1/2974) 0 * Os_TE_415230 Os_TE_415230 Chr3 2033992 2033991 + RIREX_LTR 8828 0.0003 (1/2979) 0 * Os_TE_415231 Os_TE_415215 Chr3 2020992 2020993 - SC-3_LTR 5748 0.0003 (1/2990) 0 * Os_TE_415214 Os_TE_415214 Chr3 2020988 2020987 + ORSiTERTOOT00296 5553 0.0003 (1/2993) 0 * Os_TE_415215 Os_TE_415183 Chr3 2005181 2005182 - OLO24 345 0.0003 (1/2996) 0 * * Os_TE_415181 Chr3 2005003 2005002 - STOWAWAY51_OS 246 0.0073 (22/2995) 0 * Os_TE_415180 Os_TE_415180 Chr3 2004997 2004998 + STOWAWAY51_OS 246 0.0070 (21/2991) 0 * Os_TE_415181 Os_TE_415179 Chr3 2003077 2003078 + MPING 430 0.0003 (1/2971) 0 * * Os_TE_415169 Chr3 2001679 2001680 - RIREX_LTR 8828 0.0003 (1/2988) 0 * * Os_TE_415164 Chr3 2001115 2001116 + RIREX_LTR 8828 0.0003 (1/2980) 0 * Os_TE_415163 Os_TE_415163 Chr3 2001111 2001110 - RIREX_LTR 8828 0.0003 (1/2983) 0 * Os_TE_415164 Os_TE_415132 Chr3 1986820 1986821 - ORSiTERTOOT00332 5395 0.0003 (1/2995) 0 * Os_TE_415131 Os_TE_415131 Chr3 1986816 1986815 + ORSiTERTOOT00332 5395 0.0003 (1/2998) 0 * Os_TE_415132 Os_TE_415130 Chr3 1984484 1984483 + ORSgTETNOOT00908 242 0.0003 (1/2999) 0 * * Os_TE_415129 Chr3 1983578 1983579 + COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_415128 Os_TE_415128 Chr3 1983574 1983573 - COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_415129 Os_TE_415121 Chr3 1980539 1980540 - ORSgTEMT01601122 212 0.0057 (17/2967) 0 * * Os_TE_415098 Chr3 1969684 1969223 - ORSgTEMT00501287 155 0.3167 (947/2990) 1 Intact * Os_TE_415066 Chr3 1955999 1956000 - TWIFB1 3737 0.6839 (2014/2945) 0 * Os_TE_415065 Os_TE_415065 Chr3 1955992 1955991 + TWIFB1 3737 0.6566 (1803/2746) 0 * Os_TE_415066 Os_TE_415063 Chr3 1954538 1954539 + SC-8_LTR 4951 0.0007 (2/2991) 0 * Os_TE_415062 Os_TE_415062 Chr3 1954534 1954533 - SC-8_LTR 4951 0.0007 (2/2994) 0 * Os_TE_415063 Os_TE_415032 Chr3 1940285 1940284 - MIDWAY 985 0.6616 (1916/2896) 0 * * Os_TE_415022 Chr3 1932320 1932321 + RIRE5-LTR_OS 6427 0.5357 (1577/2944) 0 * Os_TE_415021 Os_TE_415021 Chr3 1932317 1932316 - RIRE5-LTR_OS 6427 0.5468 (1631/2983) 0 * Os_TE_415022 Os_TE_414971 Chr3 1916518 1910824 + ORSiTERTOOT00296 5553 0.4724 (1410/2985) 1 Intact Os_TE_414968 Os_TE_414968 Chr3 1910824 1916287 - SC-3_LTR 5748 0.4704 (1405/2987) 1 Intact Os_TE_414971 Os_TE_414954 Chr3 1904821 1904820 + RETROSAT2LTR 12796 0.0907 (265/2921) 0 * * Os_TE_414949 Chr3 1903467 1903466 + ORSgTEMT01601122 212 0.0007 (2/2876) 0 * * Os_TE_414915 Chr3 1885329 1885330 - RIREX_LTR 8828 0.0027 (8/2957) 0 * Os_TE_414914 Os_TE_414914 Chr3 1885325 1885324 + RIREX_LTR 8828 0.0027 (8/2949) 0 * Os_TE_414915 Os_TE_414910 Chr3 1882115 1882116 - RIREX_LTR 8828 0.0003 (1/2996) 0 * Os_TE_414909 Os_TE_414909 Chr3 1882111 1882110 + RIREX_LTR 8828 0.0003 (1/2996) 0 * Os_TE_414910 Os_TE_414892 Chr3 1871448 1871449 - MuDR3_OS 8604 0.0004 (1/2549) 0 * * Os_TE_414889 Chr3 1870488 1870489 + MuDR2_OS 6770 0.0013 (4/2988) 0 * Os_TE_414888 Os_TE_414888 Chr3 1870479 1870478 - MuDR2_OS 6770 0.0013 (4/2988) 0 * Os_TE_414889 Os_TE_414857 Chr3 1858448 1858449 - STOWAWAY51_OS 246 0.0003 (1/2941) 0 * * Os_TE_414837 Chr3 1850988 1850987 + ORSiTERTOOT00034 791 0.0007 (2/2807) 0 * * Os_TE_414828 Chr3 1848276 1848277 - SZ-35LTR 3853 0.0361 (99/2744) 0 * Os_TE_414827 Os_TE_414827 Chr3 1848272 1848271 + RETROSAT4_LTR 13504 0.0349 (103/2954) 0 * Os_TE_414828 Os_TE_414819 Chr3 1845811 1845812 + SC-8_LTR 4951 0.0003 (1/2997) 0 * Os_TE_414818 Os_TE_414818 Chr3 1845807 1845806 - SC-8_LTR 4951 0.0003 (1/2996) 0 * Os_TE_414819 Os_TE_414817 Chr3 1845369 1845368 + RPO_OS 1983 0.0745 (223/2994) 0 * * Os_TE_414804 Chr3 1840369 1840488 + SINE1R5_OS 121 0.4849 (1447/2984) 1 Intact * Os_TE_414776 Chr3 1822239 1822240 - ORSiTETNOOT00134 607 0.0003 (1/2979) 0 * * Os_TE_414774 Chr3 1821859 1821860 - MPING 430 0.0003 (1/2997) 0 * Os_TE_414773 Os_TE_414773 Chr3 1821857 1821856 + MPING 430 0.0003 (1/2993) 0 * Os_TE_414774 Os_TE_414751 Chr3 1812407 1812408 + SC-8_LTR 4951 0.0003 (1/2990) 0 * Os_TE_414750 Os_TE_414750 Chr3 1812403 1812402 - SC-8_LTR 4951 0.0003 (1/2989) 0 * Os_TE_414751 Os_TE_414726 Chr3 1796674 1796675 + TYPEH 309 0.6788 (2033/2995) 0 * * Os_TE_414703 Chr3 1784951 1785262 - STOWAWAY12_OS 312 0.3331 (997/2993) 1 Intact * Os_TE_414615 Chr3 1715230 1715231 + ORSgTEMT01602447 234 0.1007 (119/1182) 0 * * Os_TE_414608 Chr3 1713114 1713113 + ORSiCMCM00100019 2717 0.6279 (1856/2956) 0 * * Os_TE_414577 Chr3 1701781 1701782 - MPING 430 0.0027 (8/2982) 0 * Os_TE_414576 Os_TE_414576 Chr3 1701779 1701778 + MPING 430 0.0027 (8/2980) 0 * Os_TE_414577 Os_TE_414572 Chr3 1699365 1699366 - ORSgTEMT02000040 196 0.4765 (1421/2982) 0 * * Os_TE_414570 Chr3 1699218 1699217 - NDNA1TNA_OS 334 0.0020 (3/1535) 0 * Os_TE_414569 Os_TE_414569 Chr3 1699205 1699206 - ORSgTEMT00100242 351 0.5042 (1491/2957) 0 * Os_TE_414570 Os_TE_414568 Chr3 1698784 1699051 + F770 284 0.3519 (1006/2859) 1 Intact * Os_TE_414567 Chr3 1697715 1697716 + MPING 430 0.0003 (1/2996) 0 * Os_TE_414566 Os_TE_414566 Chr3 1697713 1697712 - MPING 430 0.0003 (1/2991) 0 * Os_TE_414567 Os_TE_414558 Chr3 1694698 1694699 + COPIA2-LTR_OS 6433 0.0003 (1/2956) 0 * Os_TE_414557 Os_TE_414557 Chr3 1694694 1694693 - COPIA2-LTR_OS 6433 0.0003 (1/2956) 0 * Os_TE_414558 Os_TE_414539 Chr3 1684116 1684115 - CRM-LTR_OS 7749 0.0007 (2/2970) 0 * * Os_TE_414535 Chr3 1680913 1680914 - RETROSAT4_LTR 13504 0.2879 (860/2987) 0 * Os_TE_414534 Os_TE_414534 Chr3 1680909 1680908 + RETROSAT4_LTR 13504 0.2652 (776/2926) 0 * Os_TE_414535 Os_TE_414524 Chr3 1676980 1676981 - OLO24 345 0.0003 (1/2986) 0 * Os_TE_414523 Os_TE_414523 Chr3 1676978 1676977 + OLO24 345 0.0003 (1/2980) 0 * Os_TE_414524 Os_TE_414522 Chr3 1676691 1676692 + COPI2_LTR 4733 0.0003 (1/2981) 0 * Os_TE_414521 Os_TE_414521 Chr3 1676687 1676686 - COPI2_LTR 4733 0.0003 (1/2985) 0 * Os_TE_414522 Os_TE_414520 Chr3 1676533 1676199 + ORSgTEMT00101341 314 0.5900 (1763/2988) 1 Intact Os_TE_414517 Os_TE_414517 Chr3 1676198 1676535 + ORSgTEMT00100531 325 0.5931 (1774/2991) 1 Intact Os_TE_414520 Os_TE_414473 Chr3 1650908 1650909 + ORSgTEMT01602181 239 0.0017 (5/2927) 0 * * Os_TE_414411 Chr3 1621423 1621422 + ORSgTETNOOT00908 242 0.0003 (1/2923) 0 * * Os_TE_414392 Chr3 1617597 1617598 + OSTE33 1012 0.6525 (1910/2927) 0 * Os_TE_414391 Os_TE_414391 Chr3 1617588 1617587 + OSTE33 1012 0.6490 (1886/2906) 0 * Os_TE_414392 Os_TE_414320 Chr3 1590343 1590344 - ORSgTERT00200842 1080 0.0003 (1/2951) 0 * * Os_TE_414319 Chr3 1589568 1589569 + OSR3_LTR 5201 0.0003 (1/2967) 0 * Os_TE_414318 Os_TE_414318 Chr3 1589564 1589563 - OSR3_LTR 5201 0.0003 (1/2968) 0 * Os_TE_414319 Os_TE_414271 Chr3 1560005 1560004 + MUDRN5_OS 374 0.0003 (1/2996) 0 * * Os_TE_414264 Chr3 1549836 1549837 - RETROSAT4_LTR 13504 0.6697 (2003/2991) 0 * * Os_TE_414240 Chr3 1540292 1540293 - INDITTO 263 0.0007 (2/2996) 0 * Os_TE_414239 Os_TE_414239 Chr3 1540290 1540289 - ORSgTETNOOT02000 263 0.0007 (2/2994) 0 * Os_TE_414240 Os_TE_414236 Chr3 1538013 1538014 - COPI2_LTR 4733 0.0003 (1/2993) 0 * * Os_TE_414218 Chr3 1531976 1531975 + STOWAWAY51_OS 246 0.0087 (26/2994) 0 * Os_TE_414217 Os_TE_414217 Chr3 1531970 1531971 - STOWAWAY51_OS 246 0.0097 (29/2996) 0 * Os_TE_414218 Os_TE_414211 Chr3 1526510 1526511 + ORSgTEMT00900740 252 0.0003 (1/2999) 0 * * Os_TE_414195 Chr3 1517396 1517397 - ORSgTETNOOT01534 208 0.0003 (1/2988) 0 * * Os_TE_414185 Chr3 1510632 1510493 - ORSgTEMT00501730 148 0.1538 (427/2777) 1 Intact Os_TE_414183 Os_TE_414183 Chr3 1510485 1510632 + ORSgTEMT00501332 148 0.1406 (419/2980) 1 Intact Os_TE_414185 Os_TE_414179 Chr3 1509646 1507749 - MERMITED 1572 0.1329 (393/2957) 1 Intact Os_TE_414176 Os_TE_414176 Chr3 1507751 1509563 + MERMITEA 1710 0.1396 (418/2995) 1 Intact Os_TE_414179 Os_TE_414160 Chr3 1493942 1493801 + ORSgTEMT00501682 146 0.1607 (412/2564) 1 Intact * Os_TE_414155 Chr3 1492614 1492615 - TYPEM 227 0.8630 (2482/2876) 0 * * Os_TE_414150 Chr3 1492108 1491863 - ORSgTEMT00900099 250 0.1419 (423/2982) 1 Intact * Os_TE_414140 Chr3 1487901 1487902 + SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_414139 Os_TE_414139 Chr3 1487897 1487896 - SC-8_LTR 4951 0.0003 (1/2988) 0 * Os_TE_414140 Os_TE_414068 Chr3 1456364 1456365 + RETRO2_LTR 12874 0.2113 (608/2878) 0 * Os_TE_414067 Os_TE_414067 Chr3 1456360 1456359 - RETRO2_LTR 12874 0.2217 (644/2905) 0 * Os_TE_414068 Os_TE_414064 Chr3 1455931 1455696 + ORSgTETNOOT00908 242 0.1231 (359/2916) 1 Intact * Os_TE_414025 Chr3 1443159 1443160 - MPING 430 0.0007 (2/2848) 0 * Os_TE_414024 Os_TE_414024 Chr3 1443157 1443156 + MPING 430 0.0007 (2/2863) 0 * Os_TE_414025 Os_TE_414011 Chr3 1441030 1441029 - CENTRE 280 0.0003 (1/2999) 0 * * Os_TE_413982 Chr3 1431131 1431132 + MPING 430 0.0030 (9/2972) 0 * Os_TE_413981 Os_TE_413981 Chr3 1431129 1431128 - MPING 430 0.0037 (11/2970) 0 * Os_TE_413982 Os_TE_413978 Chr3 1429632 1429633 + ORSiTERTOOT00226 792 0.0003 (1/2977) 0 * Os_TE_413977 Os_TE_413977 Chr3 1429628 1429627 - SZ-22_LTR 4403 0.0003 (1/2979) 0 * Os_TE_413978 Os_TE_413976 Chr3 1429405 1429406 - SZ-35LTR 3853 0.6539 (1933/2956) 0 * Os_TE_413975 Os_TE_413975 Chr3 1429401 1429400 + RETROSAT4_LTR 13504 0.6104 (1631/2672) 0 * Os_TE_413976 Os_TE_413971 Chr3 1427431 1427432 - MPING 430 0.0003 (1/2998) 0 * Os_TE_413970 Os_TE_413970 Chr3 1427429 1427428 + MPING 430 0.0003 (1/2998) 0 * Os_TE_413971 Os_TE_413966 Chr3 1426096 1426097 - RETROSAT4_LTR 13504 0.6738 (2016/2992) 0 * Os_TE_413965 Os_TE_413965 Chr3 1426092 1426091 + RETROSAT4_LTR 13504 0.6678 (1990/2980) 0 * Os_TE_413966 Os_TE_413964 Chr3 1425648 1425649 + RETROSAT4_LTR 13504 0.0010 (3/2988) 0 * Os_TE_413963 Os_TE_413963 Chr3 1425644 1425643 - SZ-35LTR 3853 0.0010 (3/2979) 0 * Os_TE_413964 Os_TE_413960 Chr3 1423979 1423978 - RETROSAT4_LTR 13504 0.0017 (2/1182) 0 * * Os_TE_413953 Chr3 1421040 1421041 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_413952 Os_TE_413952 Chr3 1421036 1421035 + COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_413953 Os_TE_413944 Chr3 1416198 1416197 - STOWAWAY51_OS 246 0.0017 (5/2997) 0 * Os_TE_413943 Os_TE_413943 Chr3 1416195 1416196 + ORSgTEMT01601591 242 0.0017 (5/2997) 0 * Os_TE_413944 Os_TE_413902 Chr3 1394854 1394853 - COPI2_LTR 4733 0.0007 (2/2994) 0 * * Os_TE_413896 Chr3 1393046 1393045 + STOWAWAY51_OS 246 0.0655 (196/2991) 0 * Os_TE_413895 Os_TE_413895 Chr3 1393040 1393041 - STOWAWAY51_OS 246 0.0656 (196/2988) 0 * Os_TE_413896 Os_TE_413894 Chr3 1392409 1382133 - ORSgTERT00201216 11284 0.2632 (785/2983) 1 Intact Os_TE_413888 Os_TE_413888 Chr3 1380849 1392409 - RIRE2_LTR 11306 0.2561 (760/2968) 1 Intact Os_TE_413894 Os_TE_413876 Chr3 1378443 1378442 + RIREX_LTR 8828 0.0009 (1/1145) 0 * * Os_TE_413869 Chr3 1375988 1375989 + TNR2A 152 0.0663 (197/2972) 0 * * Os_TE_413842 Chr3 1359786 1359787 + GYPSY-A_LTR 8951 0.0007 (2/2997) 0 * Os_TE_413841 Os_TE_413841 Chr3 1359782 1359781 - GYPSY-A_LTR 8951 0.0007 (2/2997) 0 * Os_TE_413842 Os_TE_413833 Chr3 1353209 1353210 + COPIA2-LTR_OS 6433 0.0007 (2/2990) 0 * Os_TE_413832 Os_TE_413832 Chr3 1353205 1353204 - COPIA2-LTR_OS 6433 0.0007 (2/2988) 0 * Os_TE_413833 Os_TE_413795 Chr3 1336434 1336435 - MPING 430 0.0003 (1/2955) 0 * Os_TE_413794 Os_TE_413794 Chr3 1336432 1336431 + MPING 430 0.0003 (1/2952) 0 * Os_TE_413795 Os_TE_413788 Chr3 1335517 1335516 + MDR2 6967 0.0004 (1/2668) 0 * * Os_TE_413787 Chr3 1335476 1335475 + STOWAWAY51_OS 246 0.0004 (1/2778) 0 * * Os_TE_413762 Chr3 1320442 1320443 - SC-3_LTR 5748 0.0003 (1/2990) 0 * Os_TE_413761 Os_TE_413761 Chr3 1320438 1320437 + ORSiTERTOOT00296 5553 0.0003 (1/2991) 0 * Os_TE_413762 Os_TE_413757 Chr3 1317317 1317318 + SZ-67LTR 1540 0.0010 (3/2974) 0 * Os_TE_413756 Os_TE_413756 Chr3 1317313 1317312 - SZ-67LTR 1540 0.0017 (5/2981) 0 * Os_TE_413757 Os_TE_413732 Chr3 1307881 1307880 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * * Os_TE_413726 Chr3 1307113 1307112 - ORSgTEMT01601122 212 0.0007 (2/2985) 0 * * Os_TE_413712 Chr3 1301292 1301080 + ORSgTEMT01601122 212 0.1508 (446/2958) 1 Intact * Os_TE_413709 Chr3 1300918 1300919 + INDITTO 263 0.6931 (2028/2926) 0 * Os_TE_413708 Os_TE_413708 Chr3 1300916 1300915 - INDITTO 263 0.6839 (2012/2942) 0 * Os_TE_413709 Os_TE_413707 Chr3 1299241 1299242 + MPING 430 0.0041 (2/485) 0 * Os_TE_413706 Os_TE_413706 Chr3 1299239 1299238 - MPING 430 0.0062 (3/484) 0 * Os_TE_413707 Os_TE_413705 Chr3 1299090 1299089 - COPIA2-LTR_OS 6433 0.0014 (4/2917) 0 * * Os_TE_413696 Chr3 1296253 1296254 - RETRO1_LTR 8314 0.5880 (1714/2915) 0 * Os_TE_413695 Os_TE_413695 Chr3 1296249 1296248 + RETRO2A_LTR 12895 0.5878 (1728/2940) 0 * Os_TE_413696 Os_TE_413668 Chr3 1269901 1258917 - MuDR4_OS 7610 0.1675 (473/2824) 1 Intact Os_TE_413666 Os_TE_413666 Chr3 1258916 1269900 - MuDR4_OS 7610 0.1230 (308/2505) 1 Intact Os_TE_413668 Os_TE_413646 Chr3 1254117 1253505 - DS-RICE2N 613 0.1617 (455/2813) 1 Intact Os_TE_413645 Os_TE_413645 Chr3 1253505 1254117 + DS-RICE2N 613 0.1713 (478/2791) 1 Intact Os_TE_413646 Os_TE_413638 Chr3 1252632 1252633 - MPING 430 0.0003 (1/2972) 0 * Os_TE_413637 Os_TE_413637 Chr3 1252630 1252629 + MPING 430 0.0003 (1/2967) 0 * Os_TE_413638 Os_TE_413636 Chr3 1252460 1252459 - STOWAWAY51_OS 246 0.0003 (1/2974) 0 * * Os_TE_413634 Chr3 1252324 1252325 + MPING 430 0.0003 (1/2982) 0 * Os_TE_413633 Os_TE_413633 Chr3 1252322 1252321 - MPING 430 0.0003 (1/2983) 0 * Os_TE_413634 Os_TE_413632 Chr3 1252199 1252198 - STOWAWAY44_OS 240 0.0013 (4/2992) 0 * Os_TE_413631 Os_TE_413631 Chr3 1252196 1252197 + STOWAWAY44_OS 240 0.0013 (4/2995) 0 * Os_TE_413632 Os_TE_413628 Chr3 1251667 1251668 - RETROSAT4_LTR 13504 0.0011 (3/2807) 0 * Os_TE_413627 Os_TE_413627 Chr3 1251663 1251662 + RETROSAT4_LTR 13504 0.0011 (3/2793) 0 * Os_TE_413628 Os_TE_413619 Chr3 1248816 1248815 - RETROSAT4_LTR 13504 0.0204 (58/2844) 0 * * Os_TE_413601 Chr3 1246643 1246642 - MPING 430 0.0003 (1/2981) 0 * * Os_TE_413595 Chr3 1246191 1246192 - MPING 430 0.0021 (6/2888) 0 * Os_TE_413594 Os_TE_413594 Chr3 1246189 1246188 + MPING 430 0.0017 (5/2949) 0 * Os_TE_413595 Os_TE_413588 Chr3 1245422 1245099 - NDNA1TNA_OS 334 0.1607 (480/2987) 1 Intact * Os_TE_413532 Chr3 1228504 1228505 + MPING 430 0.0003 (1/2910) 0 * Os_TE_413531 Os_TE_413531 Chr3 1228502 1228501 - MPING 430 0.0003 (1/2905) 0 * Os_TE_413532 Os_TE_413461 Chr3 1206511 1206512 - MPING 430 0.0003 (1/2990) 0 * * Os_TE_413423 Chr3 1174087 1174088 + MPING 430 0.0080 (24/2993) 0 * Os_TE_413422 Os_TE_413422 Chr3 1174085 1174084 - MPING 430 0.0080 (24/2992) 0 * Os_TE_413423 Os_TE_413403 Chr3 1167404 1167405 - RIREX_LTR 8828 0.0003 (1/2998) 0 * Os_TE_413402 Os_TE_413402 Chr3 1167400 1167399 + RIREX_LTR 8828 0.0003 (1/2987) 0 * Os_TE_413403 Os_TE_413401 Chr3 1167042 1167043 - INDITTO 263 0.5500 (1629/2962) 0 * Os_TE_413400 Os_TE_413400 Chr3 1167040 1167039 + INDITTO 263 0.5562 (1663/2990) 0 * Os_TE_413401 Os_TE_413399 Chr3 1167019 1167018 - NDNA1TNA_OS 334 0.0017 (4/2338) 0 * * Os_TE_413393 Chr3 1164910 1164911 + SPMLIKE 10989 0.0013 (4/2984) 0 * Os_TE_413392 Os_TE_413392 Chr3 1164908 1164907 - ORSgTETN00200001 10994 0.0013 (4/2964) 0 * Os_TE_413393 Os_TE_413378 Chr3 1161880 1161881 + ORSgTEMT01701324 144 0.0020 (6/2935) 0 * * Os_TE_413361 Chr3 1158533 1158532 - ORSgTEMT01600152 226 0.0007 (2/2984) 0 * * Os_TE_413358 Chr3 1155447 1155446 - COPI2_LTR 4733 0.0003 (1/2997) 0 * * Os_TE_413355 Chr3 1152435 1152436 - MPING 430 0.0003 (1/2992) 0 * Os_TE_413354 Os_TE_413354 Chr3 1152433 1152432 + MPING 430 0.0003 (1/2994) 0 * Os_TE_413355 Os_TE_413344 Chr3 1146136 1145894 + ORSgTETNOOT00908 242 0.3272 (979/2992) 1 Intact * Os_TE_413337 Chr3 1144291 1144147 - TNR2A 152 0.3299 (980/2971) 1 Intact Os_TE_413336 Os_TE_413336 Chr3 1144145 1144291 + TNR2A 152 0.3268 (971/2971) 1 Intact Os_TE_413337 Os_TE_413304 Chr3 1129931 1129930 + RIREX_LTR 8828 0.0003 (1/2985) 0 * * Os_TE_413301 Chr3 1127530 1127531 + MPING 430 0.0003 (1/2990) 0 * Os_TE_413300 Os_TE_413300 Chr3 1127528 1127527 - MPING 430 0.0003 (1/2990) 0 * Os_TE_413301 Os_TE_413296 Chr3 1124913 1124914 + CACTA-B 1103 0.0014 (4/2874) 0 * * Os_TE_413285 Chr3 1123900 1123901 + ORSiTEMT00300001 383 0.1926 (574/2980) 0 * * Os_TE_413283 Chr3 1123808 1123809 - ORSiTETNOOT00134 607 0.0030 (9/2992) 0 * Os_TE_413282 Os_TE_413282 Chr3 1123801 1123800 + TWIF 586 0.0033 (10/2991) 0 * Os_TE_413283 Os_TE_413273 Chr3 1114493 1114494 - COPIA2-LTR_OS 6433 0.0003 (1/2983) 0 * Os_TE_413272 Os_TE_413272 Chr3 1114489 1114488 + COPIA2-LTR_OS 6433 0.0003 (1/2984) 0 * Os_TE_413273 Os_TE_413267 Chr3 1113032 1113033 - MPING 430 0.0047 (14/2992) 0 * Os_TE_413266 Os_TE_413266 Chr3 1113030 1113029 + MPING 430 0.0047 (14/2990) 0 * Os_TE_413267 Os_TE_413242 Chr3 1099155 1099156 - LINE-4_OS 3662 0.0003 (1/2981) 0 * * Os_TE_413226 Chr3 1083472 1083473 + SC-8_LTR 4951 0.0003 (1/2991) 0 * Os_TE_413225 Os_TE_413225 Chr3 1083468 1083467 - SC-8_LTR 4951 0.0003 (1/2995) 0 * Os_TE_413226 Os_TE_413224 Chr3 1083417 1083418 - SC-3_LTR 5748 0.0010 (3/2987) 0 * Os_TE_413223 Os_TE_413223 Chr3 1083413 1083412 + ORSiTERTOOT00296 5553 0.0010 (3/2988) 0 * Os_TE_413224 Os_TE_413203 Chr3 1068764 1068765 + SC-8_LTR 4951 0.0003 (1/2963) 0 * Os_TE_413202 Os_TE_413202 Chr3 1068760 1068759 - SC-8_LTR 4951 0.0003 (1/2974) 0 * Os_TE_413203 Os_TE_413199 Chr3 1066958 1066959 + OSMU5 4881 0.0007 (2/2976) 0 * * Os_TE_413198 Chr3 1064450 1064451 + ORSiTERTOOT00296 5553 0.0121 (36/2968) 0 * Os_TE_413197 Os_TE_413197 Chr3 1064446 1064445 - SC-3_LTR 5748 0.0121 (36/2963) 0 * Os_TE_413198 Os_TE_413192 Chr3 1060419 1060420 + ORSiTERTOOT00296 5553 0.0007 (2/2978) 0 * Os_TE_413191 Os_TE_413191 Chr3 1060415 1060414 - SC-3_LTR 5748 0.0007 (2/2979) 0 * Os_TE_413192 Os_TE_413185 Chr3 1057533 1057532 - ORSgTEMT01600317 232 0.0007 (2/2978) 0 * * Os_TE_413176 Chr3 1056065 1056066 - ORSgTEMT01601208 238 0.0007 (2/2968) 0 * * Os_TE_413155 Chr3 1048997 1048998 + NDNA1TNA_OS 334 0.0007 (2/2977) 0 * * Os_TE_413146 Chr3 1047183 1047184 + SZ-62LTR 3649 0.5445 (1309/2404) 0 * * Os_TE_413143 Chr3 1046018 1046019 + MERMITEA 1710 0.6800 (2008/2953) 0 * Os_TE_413142 Os_TE_413142 Chr3 1046010 1046009 + MERMITEA 1710 0.6819 (2026/2971) 0 * Os_TE_413143 Os_TE_413131 Chr3 1044000 1044001 + OsSN3 183 0.0017 (5/2994) 0 * * Os_TE_413130 Chr3 1043795 1043794 - ORSgTEMT00900099 250 0.0007 (2/2992) 0 * * Os_TE_413129 Chr3 1043694 1043695 - RPO_OS 1983 0.0017 (5/2997) 0 * * Os_TE_413109 Chr3 1039656 1039657 - CRM-LTR_OS 7749 0.6167 (1849/2998) 0 * Os_TE_413108 Os_TE_413108 Chr3 1039652 1039651 + CRM-LTR_OS 7749 0.6138 (1829/2980) 0 * Os_TE_413109 Os_TE_413106 Chr3 1038972 1038971 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * * Os_TE_413099 Chr3 1037643 1037644 + MPING 430 0.0003 (1/2997) 0 * Os_TE_413098 Os_TE_413098 Chr3 1037641 1037640 - MPING 430 0.0003 (1/2999) 0 * Os_TE_413099 Os_TE_413095 Chr3 1036961 1036962 - ORSgTEMT02400179 221 0.0007 (2/2962) 0 * * Os_TE_413087 Chr3 1033087 1033086 - NDNA1TNA_OS 334 0.0010 (3/2998) 0 * * Os_TE_413086 Chr3 1032492 1032493 + MDR2 6967 0.1672 (501/2996) 0 * Os_TE_413085 Os_TE_413085 Chr3 1032482 1032481 + MDR2 6967 0.1666 (499/2996) 0 * Os_TE_413086 Os_TE_413076 Chr3 1017700 1017701 + Cassandra_OS-LTR 764 0.0157 (47/2992) 0 * Os_TE_413075 Os_TE_413075 Chr3 1017696 1017695 - Cassandra_OS-LTR 764 0.0157 (47/2994) 0 * Os_TE_413076 Os_TE_413071 Chr3 1014973 1014974 + MPING 430 0.0020 (1/496) 0 * * Os_TE_413056 Chr3 1013781 1013557 + ORSgTEMT01600726 235 0.1573 (470/2987) 1 Intact Os_TE_413055 Os_TE_413055 Chr3 1013547 1013793 - STOWAWAY51_OS 246 0.1574 (471/2993) 1 Intact Os_TE_413056 Os_TE_413046 Chr3 1010623 1010624 - COPI2_LTR 4733 0.0003 (1/2990) 0 * * Os_TE_413045 Chr3 1007739 1007740 - COPI2_LTR 4733 0.0612 (183/2989) 0 * Os_TE_413044 Os_TE_413044 Chr3 1007735 1007734 + COPI2_LTR 4733 0.0612 (183/2990) 0 * Os_TE_413045 Os_TE_413038 Chr3 1002433 1002434 - COPIA2-LTR_OS 6433 0.0003 (1/2955) 0 * Os_TE_413037 Os_TE_413037 Chr3 1002429 1002428 + COPIA2-LTR_OS 6433 0.0003 (1/2963) 0 * Os_TE_413038 Os_TE_413005 Chr3 974142 967736 - RIREX_LTR 8828 0.2572 (757/2943) 1 Intact Os_TE_413003 Os_TE_413003 Chr3 967736 974142 + RIREX_LTR 8828 0.2603 (766/2943) 1 Intact Os_TE_413005 Os_TE_412987 Chr3 958053 958052 + ORSgTEMT01601591 242 0.0003 (1/2998) 0 * * Os_TE_412981 Chr3 955097 955098 + NDNA1TNA_OS 334 0.0007 (2/2829) 0 * * Os_TE_412978 Chr3 954698 954697 + ORSgTETNOOT01668 244 0.0003 (1/2997) 0 * * Os_TE_412954 Chr3 945326 945327 + MERMITE18B 1306 0.0405 (117/2886) 0 * Os_TE_412953 Os_TE_412953 Chr3 945318 945317 - MERMITE18B 1306 0.0646 (192/2972) 0 * Os_TE_412954 Os_TE_412936 Chr3 932008 932007 + ORSgTEMT01601591 242 0.0007 (2/2994) 0 * Os_TE_412935 Os_TE_412935 Chr3 932005 932006 + ORSgTEMT01601591 242 0.0007 (2/2994) 0 * Os_TE_412936 Os_TE_412930 Chr3 928583 928584 + SZ-9LTR 965 0.0003 (1/2992) 0 * * Os_TE_412912 Chr3 921936 915813 + RIRE5-LTR_OS 6427 0.3049 (890/2919) 1 Intact Os_TE_412908 Os_TE_412908 Chr3 915810 921708 - RIRE5-LTR_OS 6427 0.3283 (976/2973) 1 Intact Os_TE_412912 Os_TE_412896 Chr3 914053 914054 - RETRO1_LTR 8314 0.0003 (1/2990) 0 * Os_TE_412895 Os_TE_412895 Chr3 914049 914048 + RETRO2A_LTR 12895 0.0007 (2/2993) 0 * Os_TE_412896 Os_TE_412873 Chr3 903212 903211 + STOWAWAY51_OS 246 0.0003 (1/2946) 0 * * Os_TE_412854 Chr3 899587 899588 - COPIA2-LTR_OS 6433 0.0180 (52/2894) 0 * Os_TE_412852 Os_TE_412852 Chr3 899577 899576 - ORSgTERT00100363 6446 0.0163 (48/2950) 0 * Os_TE_412854 Os_TE_412846 Chr3 898832 899081 + ORSgTEMT00900388 252 0.3241 (970/2993) 1 Intact * Os_TE_412844 Chr3 898436 898437 - MPING 430 0.0017 (5/2992) 0 * Os_TE_412843 Os_TE_412843 Chr3 898434 898433 + MPING 430 0.0017 (5/2993) 0 * Os_TE_412844 Os_TE_412837 Chr3 897053 897054 + ORSgTETNOOT00908 242 0.0007 (2/2948) 0 * * Os_TE_412828 Chr3 894560 894561 - WUJI 257 0.6824 (2043/2994) 0 * * Os_TE_412805 Chr3 887105 887106 - MPING 430 0.0097 (29/2979) 0 * Os_TE_412804 Os_TE_412804 Chr3 887103 887102 + MPING 430 0.0097 (28/2880) 0 * Os_TE_412805 Os_TE_412775 Chr3 875960 875959 + STOWAWAY51_OS 246 0.0010 (3/2996) 0 * Os_TE_412774 Os_TE_412774 Chr3 875954 875955 - STOWAWAY51_OS 246 0.0010 (3/2998) 0 * Os_TE_412775 Os_TE_412766 Chr3 869045 869046 + ORSgTETNOOT01570 244 0.0836 (250/2989) 0.07 * Os_TE_412765 Os_TE_412765 Chr3 869043 869042 + INDITTO 263 0.0841 (251/2986) 0 * Os_TE_412766 Os_TE_412759 Chr3 866031 866032 + MPING 430 0.0020 (6/2975) 0 * Os_TE_412758 Os_TE_412758 Chr3 866029 866028 - MPING 430 0.0017 (5/2979) 0 * Os_TE_412759 Os_TE_412756 Chr3 864410 864411 - RIRE2_LTR 11306 0.2331 (698/2995) 0 * Os_TE_412755 Os_TE_412755 Chr3 864406 864405 + RIRE2_LTR 11306 0.2361 (708/2999) 0 * Os_TE_412756 Os_TE_412754 Chr3 863850 863851 + RIREX_LTR 8828 0.0003 (1/2999) 0 * Os_TE_412753 Os_TE_412753 Chr3 863846 863845 - RIREX_LTR 8828 0.0003 (1/2998) 0 * Os_TE_412754 Os_TE_412731 Chr3 847252 847253 - SC-3_LTR 5748 0.0361 (108/2991) 0 * Os_TE_412730 Os_TE_412730 Chr3 847248 847247 + ORSiTERTOOT00296 5553 0.0355 (106/2989) 0 * Os_TE_412731 Os_TE_412717 Chr3 840498 840499 + ORSiTERTOOT00296 5553 0.0003 (1/2996) 0 * Os_TE_412716 Os_TE_412716 Chr3 840494 840493 - SC-3_LTR 5748 0.0003 (1/2995) 0 * Os_TE_412717 Os_TE_412687 Chr3 818268 818267 + ORSgTEMT00901844 250 0.0017 (5/2997) 0 * Os_TE_412686 Os_TE_412686 Chr3 818267 818268 - ORSgTEMT00900129 247 0.0017 (5/2998) 0 * Os_TE_412687 Os_TE_412683 Chr3 818159 818160 + INDITTO 263 0.5668 (1697/2994) 0 * * Os_TE_412681 Chr3 818108 818109 - MPING 430 0.0013 (4/2996) 0 * * Os_TE_412673 Chr3 813786 813787 - SC-4_LTR 5218 0.0003 (1/2972) 0 * * Os_TE_412655 Chr3 809624 809625 - OSTE24 683 0.2208 (637/2885) 0 * Os_TE_412654 Os_TE_412654 Chr3 809618 809617 - OSTE24 683 0.2105 (604/2870) 0 * Os_TE_412655 Os_TE_412643 Chr3 798680 798681 + DS-RICE3N 525 0.0024 (7/2965) 0 * * Os_TE_412631 Chr3 782275 782276 + ORSgTEMT06100010 269 0.6811 (2040/2995) 0 * Os_TE_412630 Os_TE_412630 Chr3 782273 782272 - ORSgTEMT06100010 269 0.6814 (2040/2994) 0 * Os_TE_412631 Os_TE_412627 Chr3 780801 780800 - ORSgTEMT01601432 239 0.0007 (2/2984) 0 * * Os_TE_412619 Chr3 776521 776522 - TYPEM 227 0.5639 (1676/2972) 0 * Os_TE_412618 Os_TE_412618 Chr3 776520 776519 - ORSgTEMT02400179 221 0.5666 (1692/2986) 0 * Os_TE_412619 Os_TE_412617 Chr3 774309 774310 + SC-8_LTR 4951 0.0003 (1/2970) 0 * Os_TE_412616 Os_TE_412616 Chr3 774305 774304 - SC-8_LTR 4951 0.0003 (1/2975) 0 * Os_TE_412617 Os_TE_412605 Chr3 766620 766619 + F770 284 0.0003 (1/2997) 0 * * Os_TE_412599 Chr3 764421 764420 - COPI2_LTR 4733 0.0003 (1/2993) 0 * * Os_TE_412566 Chr3 750731 750732 + MDR2 6967 0.5757 (1707/2965) 0 * Os_TE_412565 Os_TE_412565 Chr3 750723 750722 - MDR2 6967 0.5687 (1663/2924) 0 * Os_TE_412566 Os_TE_412564 Chr3 749193 749194 - COPIA2-LTR_OS 6433 0.0017 (5/2987) 0 * Os_TE_412563 Os_TE_412563 Chr3 749189 749188 + COPIA2-LTR_OS 6433 0.0017 (5/2982) 0 * Os_TE_412564 Os_TE_412561 Chr3 748783 748538 + STOWAWAY51_OS 246 0.2908 (851/2926) 1 Intact Os_TE_412559 Os_TE_412559 Chr3 748538 748780 + ORSgTEMT01601591 242 0.2876 (838/2914) 1 Intact Os_TE_412561 Os_TE_412554 Chr3 743843 743844 - MuDR3_OS 8604 0.0003 (1/2969) 0 * * Os_TE_412552 Chr3 743410 743411 + STOWAWAY9_OS 235 0.0017 (5/2978) 0 * * Os_TE_412546 Chr3 740328 740329 - ORSgTEMT02400246 177 0.5678 (1688/2973) 0 * * Os_TE_412537 Chr3 736916 736917 - ORSgTEMT01602413 239 0.0017 (5/2993) 0 * * Os_TE_412534 Chr3 734558 734557 + ORSgTEMT00502171 134 0.0017 (5/2992) 0 * Os_TE_412533 Os_TE_412533 Chr3 734557 734558 + ORSgTEMT00500201 140 0.0017 (5/2994) 0 * Os_TE_412534 Os_TE_412531 Chr3 732513 732514 + ORSgTEMT00500133 127 0.0017 (5/2997) 0 * * Os_TE_412527 Chr3 726305 726306 - TRUNCATOR 2918 0.0015 (4/2710) 0 * * Os_TE_412514 Chr3 713664 713665 + SC-8_LTR 4951 0.0007 (2/2980) 0 * Os_TE_412513 Os_TE_412513 Chr3 713660 713659 - SC-8_LTR 4951 0.0007 (2/2989) 0 * Os_TE_412514 Os_TE_412512 Chr3 712996 712997 + MPING 430 0.0003 (1/2945) 0 * Os_TE_412511 Os_TE_412511 Chr3 712994 712993 - MPING 430 0.0003 (1/2943) 0 * Os_TE_412512 Os_TE_412508 Chr3 711553 711291 - INDITTO 263 0.3412 (1006/2948) 1 Intact Os_TE_412506 Os_TE_412506 Chr3 711291 711553 + ORSgTETNOOT02316 263 0.3358 (989/2945) 1 Intact Os_TE_412508 Os_TE_412481 Chr3 697695 697694 + OLO24 345 0.6633 (1866/2813) 0 * * Os_TE_412474 Chr3 687967 682683 + OSMAR1 5265 0.3290 (906/2754) 1 Intact * Os_TE_412466 Chr3 682141 682140 - ORSgTEMT00900099 250 0.0269 (33/1228) 0 * * Os_TE_412465 Chr3 682136 682137 + ORSgTEMT00901844 250 0.6767 (2007/2966) 0 * * Os_TE_412461 Chr3 674021 674022 + ORSgTEMT00600272 361 0.2552 (346/1356) 0 * * Os_TE_412452 Chr3 668424 668423 + ORSiTERTOOT00296 5553 0.0003 (1/2970) 0 * * Os_TE_412449 Chr3 665613 665612 + ORSiTERTOOT00097 759 0.0010 (3/2981) 0 * * Os_TE_412428 Chr3 656481 656480 - COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * * Os_TE_412426 Chr3 655290 655289 - RPO_OS 1983 0.0014 (4/2944) 0 * * Os_TE_412424 Chr3 654194 654195 - COPIA2-LTR_OS 6433 0.0778 (232/2981) 0 * Os_TE_412423 Os_TE_412423 Chr3 654190 654189 + COPIA2-LTR_OS 6433 0.0764 (228/2984) 0 * Os_TE_412424 Os_TE_412385 Chr3 629596 629597 + RETROSAT3_LTR 11537 0.0003 (1/2988) 0 * Os_TE_412384 Os_TE_412384 Chr3 629592 629591 - RETROSAT3_LTR 11537 0.0003 (1/2993) 0 * Os_TE_412385 Os_TE_412381 Chr3 627396 627397 - COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_412380 Os_TE_412380 Chr3 627392 627391 + COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_412381 Os_TE_412379 Chr3 626306 625416 - RIRE5-LTR_OS 6427 0.3360 (1006/2994) 1 Solo_LTR * Os_TE_412358 Chr3 614842 614843 + RIREX_LTR 8828 0.0017 (5/2991) 0 * Os_TE_412357 Os_TE_412357 Chr3 614838 614837 - RIREX_LTR 8828 0.0017 (5/2992) 0 * Os_TE_412358 Os_TE_412354 Chr3 612319 612320 + ORSgTETNOOT00908 242 0.0003 (1/2996) 0 * * Os_TE_412352 Chr3 610751 610752 - ORSgTETNOOT02417 265 0.0003 (1/2998) 0 * * Os_TE_412351 Chr3 610729 610730 - F770 284 0.0003 (1/2992) 0 * * Os_TE_412348 Chr3 609295 609294 - STOWAWAY51_OS 246 0.0003 (1/2989) 0 * * Os_TE_412345 Chr3 609170 609171 - OSTE33 1012 0.0010 (3/2993) 0 * Os_TE_412344 Os_TE_412344 Chr3 609161 609160 - OSTE33 1012 0.0010 (3/2993) 0 * Os_TE_412345 Os_TE_412343 Chr3 604929 604928 + ORSgTEMT01602004 234 0.0013 (4/2974) 0 * Os_TE_412342 Os_TE_412342 Chr3 604926 604927 - ORSgTEMT01602413 239 0.0013 (4/2970) 0 * Os_TE_412343 Os_TE_412329 Chr3 598694 591953 + MuDR2_OS 6770 0.3021 (891/2949) 1 Intact Os_TE_412328 Os_TE_412328 Chr3 591953 598694 - MuDR2_OS 6770 0.2842 (821/2889) 1 Intact Os_TE_412329 Os_TE_412326 Chr3 591865 591864 + ORSgTETNOOT01998 254 0.7536 (1899/2520) 0 * * Os_TE_412318 Chr3 589973 589974 + ORSgTEMT00502171 134 0.0005 (1/1925) 0 * * Os_TE_412317 Chr3 589542 589543 + GYPSY-A_LTR 8951 0.5720 (1601/2799) 0 * Os_TE_412316 Os_TE_412316 Chr3 589538 589537 - GYPSY-A_LTR 8951 0.5722 (1621/2833) 0 * Os_TE_412317 Os_TE_412297 Chr3 575644 575645 - SZ-35LTR 3853 0.6334 (1895/2992) 0 * Os_TE_412296 Os_TE_412296 Chr3 575640 575639 + RETROSAT4_LTR 13504 0.6255 (1852/2961) 0 * Os_TE_412297 Os_TE_412291 Chr3 570974 570975 + MERMITEJ 1498 0.0003 (1/2974) 0 * Os_TE_412290 Os_TE_412290 Chr3 570966 570965 - MERMITEJ 1498 0.0003 (1/2974) 0 * Os_TE_412291 Os_TE_412247 Chr3 548941 548942 - SZ-55_LTR 10318 0.0027 (3/1114) 0 * Os_TE_412246 Os_TE_412246 Chr3 548937 548936 + SZ-55_LTR 10318 0.0010 (3/2893) 0 * Os_TE_412247 Os_TE_412226 Chr3 547319 547320 - SC-4_LTR 5218 0.0003 (1/2996) 0 * Os_TE_412225 Os_TE_412225 Chr3 547315 547314 + SC-4_LTR 5218 0.0003 (1/2989) 0 * Os_TE_412226 Os_TE_412218 Chr3 546573 546574 + ORSgTEMT00502544 146 0.0017 (5/2954) 0 * * Os_TE_412216 Chr3 546401 546402 + TWIF 586 0.0003 (1/2987) 0 * Os_TE_412215 Os_TE_412215 Chr3 546394 546393 - ORSiTETNOOT00134 607 0.0003 (1/2986) 0 * Os_TE_412216 Os_TE_412194 Chr3 539060 539061 + FOCUS 257 0.0003 (1/2994) 0 * Os_TE_412193 Os_TE_412193 Chr3 539058 539057 - FOCUS 257 0.0003 (1/2994) 0 * Os_TE_412194 Os_TE_412177 Chr3 535751 535750 + ORSgTEMT02400245 225 0.1743 (515/2955) 0 * * Os_TE_412128 Chr3 518054 518055 - STOWAWAY51_OS 246 0.0013 (4/2991) 0 * * Os_TE_412120 Chr3 517374 516163 + COPIA2-LTR_OS 6433 0.3540 (1020/2881) 1 Intact Os_TE_412119 Os_TE_412119 Chr3 516163 517374 - COPIA2-LTR_OS 6433 0.3711 (1088/2932) 1 Intact Os_TE_412120 Os_TE_412082 Chr3 496828 496829 + ORSgTEMT01602181 239 0.0003 (1/2984) 0 * * Os_TE_412075 Chr3 494787 494786 + STOWAWAY48_OS 261 0.0017 (5/2990) 0 * * Os_TE_412071 Chr3 492444 492445 - SC-8_LTR 4951 0.0003 (1/2998) 0 * Os_TE_412070 Os_TE_412070 Chr3 492440 492439 + SC-8_LTR 4951 0.0003 (1/2999) 0 * Os_TE_412071 Os_TE_412067 Chr3 490630 490631 - ORSiTEMT01300001 950 0.0402 (119/2959) 0 * * Os_TE_412063 Chr3 485928 485929 + COPIA2-LTR_OS 6433 0.0010 (3/2949) 0 * Os_TE_412062 Os_TE_412062 Chr3 485924 485923 - COPIA2-LTR_OS 6433 0.0010 (3/2960) 0 * Os_TE_412063 Os_TE_412056 Chr3 484778 484779 + MERMITEA 1710 0.0017 (5/2995) 0 * * Os_TE_412051 Chr3 479194 479195 - ORSgTETNOOT02565 240 0.0007 (2/2771) 0 * * Os_TE_412007 Chr3 461845 461846 - ORSgTEMT02300007 256 0.0024 (7/2960) 0 * * Os_TE_412006 Chr3 459893 459892 + MUDRN5_OS 374 0.0007 (2/2997) 0 * * Os_TE_411993 Chr3 457465 457466 - COPIA2-LTR_OS 6433 0.0013 (4/2995) 0 * Os_TE_411992 Os_TE_411992 Chr3 457461 457460 + COPIA2-LTR_OS 6433 0.0013 (4/2994) 0 * Os_TE_411993 Os_TE_411984 Chr3 453031 453032 + INDITTO 263 0.0173 (51/2946) 0 * Os_TE_411983 Os_TE_411983 Chr3 453029 453028 - INDITTO 263 0.0173 (51/2941) 0 * Os_TE_411984 Os_TE_411975 Chr3 448743 448742 - TYPEM 227 0.0003 (1/2899) 0 * Os_TE_411974 Os_TE_411974 Chr3 448740 448741 - ORSgTEMT02400246 177 0.0003 (1/2914) 0 * Os_TE_411975 Os_TE_411972 Chr3 448309 448310 - INDITTO 263 0.0037 (11/2991) 0 * Os_TE_411971 Os_TE_411971 Chr3 448307 448306 + INDITTO 263 0.0037 (11/2993) 0 * Os_TE_411972 Os_TE_411969 Chr3 446966 446967 - SC-8_LTR 4951 0.0003 (1/2994) 0 * Os_TE_411968 Os_TE_411968 Chr3 446962 446961 + SC-8_LTR 4951 0.0003 (1/2993) 0 * Os_TE_411969 Os_TE_411961 Chr3 440203 440204 + MPING 430 0.0017 (5/2986) 0 * Os_TE_411960 Os_TE_411960 Chr3 440201 440200 - MPING 430 0.0017 (5/2985) 0 * Os_TE_411961 Os_TE_411954 Chr3 438225 438224 + ORSgTETNOOT00908 242 0.0003 (1/2996) 0 * * Os_TE_411941 Chr3 433252 433014 + ORSgTEMT01601934 207 0.4742 (1417/2988) 1 Intact Os_TE_411940 Os_TE_411940 Chr3 433014 433252 - ORSgTEMT01601696 238 0.4746 (1421/2994) 1 Intact Os_TE_411941 Os_TE_411938 Chr3 430158 430157 + YOUREN 286 0.0017 (5/2980) 0 * * Os_TE_411930 Chr3 428478 428477 - ORSiTERTOOT00333 4719 0.0023 (7/2983) 0 * * Os_TE_411926 Chr3 425344 415041 - SZ-55_LTR 10318 0.4650 (1377/2961) 1 Intact Os_TE_411925 Os_TE_411925 Chr3 415040 425344 + SZ-55_LTR 10318 0.4795 (1437/2997) 1 Intact Os_TE_411926 Os_TE_411910 Chr3 406273 406272 - STOWAWAY51_OS 246 0.0003 (1/2937) 0 * Os_TE_411909 Os_TE_411909 Chr3 406270 406271 - STOWAWAY51_OS 246 0.0003 (1/2957) 0 * Os_TE_411910 Os_TE_411889 Chr3 392857 392858 - ORSgTEMT00900099 250 0.0017 (5/2901) 0 * * Os_TE_411862 Chr3 384705 384706 - COPI2_LTR 4733 0.0007 (2/2991) 0 * Os_TE_411861 Os_TE_411861 Chr3 384701 384700 + COPI2_LTR 4733 0.0007 (2/2993) 0 * Os_TE_411862 Os_TE_411848 Chr3 381128 381129 - ORSgTERT00200846 5739 0.0003 (1/2908) 0 * * Os_TE_411844 Chr3 379952 379953 + STOWAWAY50_OS 174 0.0004 (1/2833) 0 * * Os_TE_411833 Chr3 370800 370801 + ORSiTERTOOT00296 5553 0.0007 (2/2995) 0 * Os_TE_411832 Os_TE_411832 Chr3 370796 370795 - SC-3_LTR 5748 0.0007 (2/2995) 0 * Os_TE_411833 Os_TE_411826 Chr3 367093 367094 + SZ-55_LTR 10318 0.0003 (1/2995) 0 * Os_TE_411825 Os_TE_411825 Chr3 367089 367088 - SZ-55_LTR 10318 0.0003 (1/2996) 0 * Os_TE_411826 Os_TE_411824 Chr3 365475 365476 - SC-7_LTR 4431 0.0003 (1/2982) 0 * Os_TE_411823 Os_TE_411823 Chr3 365471 365470 + SC-7_LTR 4431 0.0003 (1/2981) 0 * Os_TE_411824 Os_TE_411820 Chr3 362305 362306 - SC-3_LTR 5748 0.0003 (1/2992) 0 * Os_TE_411819 Os_TE_411819 Chr3 362301 362300 + ORSiTERTOOT00296 5553 0.0003 (1/2994) 0 * Os_TE_411820 Os_TE_411798 Chr3 354152 354151 + ORSgTETNOOT00908 242 0.0003 (1/2992) 0 * * Os_TE_411776 Chr3 352639 352640 + INDITTO 263 0.0010 (3/2974) 0 * Os_TE_411775 Os_TE_411775 Chr3 352637 352636 - INDITTO 263 0.0010 (3/2977) 0 * Os_TE_411776 Os_TE_411774 Chr3 352367 352368 - INDITTO 263 0.0003 (1/2988) 0 * Os_TE_411773 Os_TE_411773 Chr3 352365 352364 + MPING 430 0.0003 (1/2992) 0 * Os_TE_411774 Os_TE_411770 Chr3 348220 348219 + STOWAWAY51_OS 246 0.0007 (2/2997) 0 * Os_TE_411769 Os_TE_411769 Chr3 348214 348215 + ORSgTEMT01601591 242 0.0007 (2/2995) 0 * Os_TE_411770 Os_TE_411738 Chr3 335163 335401 - ORSgTEMT01601768 238 0.7871 (1364/1733) 1 Intact * Os_TE_411688 Chr3 295580 295581 - RIREX_LTR 8828 0.0003 (1/2941) 0 * Os_TE_411687 Os_TE_411687 Chr3 295576 295575 + RIREX_LTR 8828 0.0003 (1/2980) 0 * Os_TE_411688 Os_TE_411668 Chr3 278636 278637 + ORSiTERTOOT00402 2660 0.0014 (4/2899) 0 * Os_TE_411667 Os_TE_411667 Chr3 278632 278631 - ORSiTERTOOT00402 2660 0.0014 (4/2899) 0 * Os_TE_411668 Os_TE_411662 Chr3 275017 275018 - ORSgTETNOOT02162 259 0.5106 (1472/2883) 0 * Os_TE_411661 Os_TE_411661 Chr3 275016 275015 - ORSgTETNOOT02184 259 0.4867 (1352/2778) 0 * Os_TE_411662 Os_TE_411644 Chr3 263338 263339 + RIRE3_LTR 12054 0.0074 (22/2970) 0 * Os_TE_411643 Os_TE_411643 Chr3 263334 263333 - RIRE3_LTR 12054 0.0074 (22/2980) 0 * Os_TE_411644 Os_TE_411642 Chr3 262961 262960 - ORSgTEMT02400246 177 0.4812 (1392/2893) 0 * * Os_TE_411641 Chr3 262951 262952 + ORSgTEMT01601934 207 0.0341 (96/2814) 0 * Os_TE_411640 Os_TE_411640 Chr3 262950 262949 - ORSgTEMT01601834 234 0.0644 (99/1537) 0 * Os_TE_411641 Os_TE_411546 Chr3 224839 224840 + MPING 430 0.0003 (1/2989) 0 * Os_TE_411545 Os_TE_411545 Chr3 224837 224836 - MPING 430 0.0003 (1/2987) 0 * Os_TE_411546 Os_TE_411539 Chr3 222906 222907 - SZ-9LTR 965 0.0007 (2/2928) 0 * Os_TE_411538 Os_TE_411538 Chr3 222902 222901 + SZ-9LTR 965 0.0007 (2/2931) 0 * Os_TE_411539 Os_TE_411535 Chr3 220643 220644 - COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_411534 Os_TE_411534 Chr3 220639 220638 + COPIA2-LTR_OS 6433 0.0003 (1/2977) 0 * Os_TE_411535 Os_TE_411532 Chr3 220508 220507 - RIREX_LTR 8828 0.0010 (3/2979) 0 * * Os_TE_411510 Chr3 216516 216515 - COPIA2-LTR_OS 6433 0.0008 (2/2641) 0 * * Os_TE_411508 Chr3 215975 215976 - INDITTO 263 0.4419 (1294/2928) 0 * Os_TE_411507 Os_TE_411507 Chr3 215973 215972 + INDITTO 263 0.4283 (1227/2865) 0 * Os_TE_411508 Os_TE_411505 Chr3 215896 215897 + RIREX_LTR 8828 0.0017 (5/2969) 0 * Os_TE_411504 Os_TE_411504 Chr3 215892 215891 - RIREX_LTR 8828 0.0017 (5/2954) 0 * Os_TE_411505 Os_TE_411462 Chr3 202530 202531 + COPI2_LTR 4733 0.0003 (1/2993) 0 * Os_TE_411461 Os_TE_411461 Chr3 202526 202525 - COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_411462 Os_TE_411440 Chr3 198574 198575 + INDITTO 263 0.0348 (104/2990) 0 * * Os_TE_411394 Chr3 185360 185359 - ORSgTEMT01600639 228 0.0013 (4/2994) 0 * * Os_TE_411390 Chr3 182183 182182 - SZ-35LTR 3853 0.1311 (392/2990) 0 * * Os_TE_411382 Chr3 177595 177596 + HELITRON8_OS 8831 0.0014 (4/2915) 0 * * Os_TE_411345 Chr3 165014 165013 + ORSgTEMT00100272 356 0.0003 (1/2965) 0 * * Os_TE_411309 Chr3 150304 150305 - RIREX_LTR 8828 0.0003 (1/2906) 0 * * Os_TE_411250 Chr3 107949 107950 - COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_411249 Os_TE_411249 Chr3 107945 107944 + COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_411250 Os_TE_411245 Chr3 106919 106920 - STOWAWAY51_OS 246 0.0003 (1/2996) 0 * * Os_TE_411228 Chr3 99906 99907 - CASTAWAY 364 0.0130 (39/2993) 0 * Os_TE_411227 Os_TE_411227 Chr3 99903 99902 - ORSgTEMT00600304 361 0.0130 (39/2993) 0 * Os_TE_411228 Os_TE_411221 Chr3 98144 98145 - SC-8_LTR 4951 0.0010 (3/2991) 0 * Os_TE_411220 Os_TE_411220 Chr3 98140 98139 + SC-8_LTR 4951 0.0010 (3/2991) 0 * Os_TE_411221 Os_TE_411215 Chr3 92170 92171 - SC-3_LTR 5748 0.0003 (1/2988) 0 * Os_TE_411214 Os_TE_411214 Chr3 92166 92165 + ORSiTERTOOT00296 5553 0.0003 (1/2991) 0 * Os_TE_411215 Os_TE_411212 Chr3 89799 89559 - ORSgTEMT01601608 238 0.8523 (2476/2905) 1 Intact Os_TE_411210 Os_TE_411210 Chr3 89557 89796 + ORSgTEMT01602181 239 0.8267 (2090/2528) 1 Intact Os_TE_411212 Os_TE_411172 Chr3 63064 63065 - RIREX_LTR 8828 0.0003 (1/2986) 0 * Os_TE_411171 Os_TE_411171 Chr3 63060 63059 + RIREX_LTR 8828 0.0003 (1/2989) 0 * Os_TE_411172 Os_TE_577860 Chr2 35922552 35922553 - ORSiTERT00200154 9386 0.3344 (965/2886) 0 * Os_TE_577859 Os_TE_577859 Chr2 35922546 35922545 + TRUNCATOR 2918 0.3566 (1053/2953) 0 * Os_TE_577860 Os_TE_577858 Chr2 35922545 35922546 - TRUNCATOR 2918 0.3341 (968/2897) 0 * * Os_TE_577823 Chr2 35892075 35892076 - AMYLTP 383 0.0017 (5/2860) 0 * Os_TE_577822 Os_TE_577822 Chr2 35892067 35892066 + AMYLTP 383 0.0017 (5/2863) 0 * Os_TE_577823 Os_TE_577820 Chr2 35891959 35891960 - TELIA 141 0.0003 (1/2880) 0 * Os_TE_577819 Os_TE_577819 Chr2 35891951 35891950 + TELIA 141 0.0003 (1/2889) 0 * Os_TE_577820 Os_TE_577804 Chr2 35885575 35885574 + HELITRON2_OS 15167 0.6018 (1797/2986) 0 * Os_TE_577803 Os_TE_577803 Chr2 35885574 35885575 - HELITRON2_OS 15167 0.6068 (1818/2996) 0 * Os_TE_577804 Os_TE_577751 Chr2 35858473 35858472 + ORSgTETNOOT01313 249 0.6043 (1802/2982) 0 * * Os_TE_577731 Chr2 35851383 35851384 - ORSiTERTOOT00074 4935 0.0003 (1/2981) 0 * Os_TE_577730 Os_TE_577730 Chr2 35851379 35851378 + ORSiTERTOOT00074 4935 0.0003 (1/2980) 0 * Os_TE_577731 Os_TE_577718 Chr2 35840361 35840362 + ORSiTERTOOT00296 5553 0.0003 (1/2994) 0 * Os_TE_577717 Os_TE_577717 Chr2 35840357 35840356 - SC-3_LTR 5748 0.0003 (1/2990) 0 * Os_TE_577718 Os_TE_577713 Chr2 35838726 35838727 - STOWAWAY51_OS 246 0.1503 (419/2788) 0 * * Os_TE_577712 Chr2 35838409 35838410 - ORSiTETNOOT00134 607 0.0003 (1/2915) 0 * Os_TE_577711 Os_TE_577711 Chr2 35838402 35838401 + TWIF 586 0.0003 (1/2895) 0 * Os_TE_577712 Os_TE_577708 Chr2 35834950 35834951 - SC-8_LTR 4951 0.0013 (4/2996) 0 * Os_TE_577707 Os_TE_577707 Chr2 35834946 35834945 + SC-8_LTR 4951 0.0013 (4/2998) 0 * Os_TE_577708 Os_TE_577705 Chr2 35832742 35832743 - COPIA2-LTR_OS 6433 0.0017 (5/2991) 0 * * Os_TE_577656 Chr2 35806879 35806880 + MPING 430 0.0003 (1/2973) 0 * Os_TE_577655 Os_TE_577655 Chr2 35806877 35806876 - MPING 430 0.0003 (1/2978) 0 * Os_TE_577656 Os_TE_577651 Chr2 35804900 35804901 - MPING 430 0.0007 (2/2964) 0 * Os_TE_577650 Os_TE_577650 Chr2 35804898 35804897 + MPING 430 0.0007 (2/2960) 0 * Os_TE_577651 Os_TE_577622 Chr2 35784430 35784429 + ORSgTETNOOT00908 242 0.0017 (5/2994) 0 * * Os_TE_577621 Chr2 35784294 35784295 - ORSgTEMT06100010 269 0.6066 (1804/2974) 0 * Os_TE_577620 Os_TE_577620 Chr2 35784292 35784291 + ORSgTEMT06100010 269 0.6080 (1821/2995) 0 * Os_TE_577621 Os_TE_577609 Chr2 35781566 35781567 + CASTAWAY 364 0.0020 (6/2983) 0 * Os_TE_577608 Os_TE_577608 Chr2 35781564 35781563 + ORSgTEMT00600124 361 0.0017 (5/2953) 0 * Os_TE_577609 Os_TE_577603 Chr2 35779443 35779444 + ORSiTERTOOT00226 792 0.0003 (1/2993) 0 * * Os_TE_577596 Chr2 35774796 35774797 - RIRE5-LTR_OS 6427 0.0003 (1/2998) 0 * Os_TE_577595 Os_TE_577595 Chr2 35774791 35774790 + RIRE5-LTR_OS 6427 0.0003 (1/2997) 0 * Os_TE_577596 Os_TE_577573 Chr2 35762368 35762369 - SC-3_LTR 5748 0.0033 (10/2991) 0 * * Os_TE_577547 Chr2 35743991 35743990 - MPING 430 0.0003 (1/2999) 0 * * Os_TE_577538 Chr2 35738769 35730947 + MDR2 6967 0.3998 (1195/2989) 1 Intact Os_TE_577537 Os_TE_577537 Chr2 35730947 35738769 - MDR2 6967 0.3944 (1173/2974) 1 Intact Os_TE_577538 Os_TE_577513 Chr2 35715064 35714917 + STOWAWAY47_OS 148 0.7190 (2129/2961) 1 Intact * Os_TE_577494 Chr2 35712644 35712645 - ORSgTEMT00901345 248 0.0020 (6/2936) 0 * * Os_TE_577475 Chr2 35709064 35709065 - MPING 430 0.0003 (1/2997) 0 * Os_TE_577474 Os_TE_577474 Chr2 35709062 35709061 + MPING 430 0.0003 (1/2998) 0 * Os_TE_577475 Os_TE_577456 Chr2 35701287 35701288 + COPI2_LTR 4733 0.0007 (2/2995) 0 * Os_TE_577455 Os_TE_577455 Chr2 35701283 35701282 - COPI2_LTR 4733 0.0007 (2/2996) 0 * Os_TE_577456 Os_TE_577454 Chr2 35700870 35700869 + ORSgTETNOOT00908 242 0.0020 (6/2986) 0 * * Os_TE_577448 Chr2 35695350 35695351 - SC-8_LTR 4951 0.0003 (1/2989) 0 * Os_TE_577447 Os_TE_577447 Chr2 35695346 35695345 + SC-8_LTR 4951 0.0007 (2/2988) 0 * Os_TE_577448 Os_TE_577445 Chr2 35694117 35694118 + SC-8_LTR 4951 0.0010 (3/2985) 0 * Os_TE_577444 Os_TE_577444 Chr2 35694113 35694112 - SC-8_LTR 4951 0.0010 (3/2988) 0 * Os_TE_577445 Os_TE_577433 Chr2 35677765 35677766 + ORSgTETNOOT02577 232 0.0043 (13/2992) 0 * Os_TE_577432 Os_TE_577432 Chr2 35677764 35677763 + ORSgTETNOOT01846 238 0.0047 (14/2996) 0 * Os_TE_577433 Os_TE_577423 Chr2 35671215 35671214 - COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_577422 Os_TE_577422 Chr2 35671210 35671211 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_577423 Os_TE_577396 Chr2 35642686 35642687 - OSTE33 1012 0.5212 (1547/2968) 0 * Os_TE_577395 Os_TE_577395 Chr2 35642677 35642676 - OSTE33 1012 0.5195 (1543/2970) 0 * Os_TE_577396 Os_TE_577393 Chr2 35639492 35639493 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_577392 Os_TE_577392 Chr2 35639488 35639487 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_577393 Os_TE_577384 Chr2 35633756 35633757 + SZ-55_LTR 10318 0.0003 (1/2980) 0 * Os_TE_577383 Os_TE_577383 Chr2 35633752 35633751 - SZ-55_LTR 10318 0.0003 (1/2984) 0 * Os_TE_577384 Os_TE_577380 Chr2 35633280 35633279 + STOWAWAY44_OS 240 0.0033 (10/2987) 0 * * Os_TE_577376 Chr2 35629091 35629092 - MUDRN1_OS 764 0.0003 (1/2990) 0 * * Os_TE_577371 Chr2 35625544 35625543 - SC-3_LTR 5748 0.0003 (1/2969) 0 * * Os_TE_577349 Chr2 35622329 35622330 + JOUZHENA 607 0.0037 (11/2994) 0 * Os_TE_577348 Os_TE_577348 Chr2 35622322 35622321 - JOUZHENA 607 0.0037 (11/2994) 0 * Os_TE_577349 Os_TE_577344 Chr2 35619195 35619196 - RETRO2_LTR 12874 0.0003 (1/2994) 0 * * Os_TE_577325 Chr2 35615378 35615377 - TYPEM 227 0.0013 (4/2965) 0 * Os_TE_577324 Os_TE_577324 Chr2 35615377 35615378 - ORSgTEMT02400148 214 0.0013 (4/2977) 0 * Os_TE_577325 Os_TE_577315 Chr2 35612376 35612375 + ORSgTEMT00300069 394 0.0017 (5/2895) 0 * * Os_TE_577305 Chr2 35606672 35606671 - STOWAWAY44_OS 240 0.0013 (4/2998) 0 * Os_TE_577304 Os_TE_577304 Chr2 35606669 35606670 + STOWAWAY44_OS 240 0.0013 (4/2997) 0 * Os_TE_577305 Os_TE_577303 Chr2 35606273 35606272 + ORSgTEMT01601591 242 0.0040 (12/2997) 0 * Os_TE_577302 Os_TE_577302 Chr2 35606270 35606271 - STOWAWAY51_OS 246 0.0040 (12/2996) 0 * Os_TE_577303 Os_TE_577298 Chr2 35603861 35603860 + HELITRON2_OS 15167 0.0053 (6/1140) 0 * Os_TE_577297 Os_TE_577297 Chr2 35603860 35603861 - HELITRON2_OS 15167 0.0070 (8/1149) 0 * Os_TE_577298 Os_TE_577295 Chr2 35602880 35602881 - ORSiTERTOOT00402 2660 0.0009 (1/1168) 0 * * Os_TE_577281 Chr2 35594597 35594596 - COPIA2-LTR_OS 6433 0.0004 (1/2764) 0 * * Os_TE_577266 Chr2 35585579 35585580 - NDNA1TNA_OS 334 0.0057 (17/2974) 0 * Os_TE_577265 Os_TE_577265 Chr2 35585578 35585577 + ORSgTEMT00101341 314 0.0051 (15/2948) 0 * Os_TE_577266 Os_TE_577259 Chr2 35583668 35583669 + RIREX_LTR 8828 0.0020 (6/2988) 0 * Os_TE_577258 Os_TE_577258 Chr2 35583664 35583663 - RIREX_LTR 8828 0.0020 (6/2993) 0 * Os_TE_577259 Os_TE_577257 Chr2 35582787 35582788 + COPI2_LTR 4733 0.0003 (1/2989) 0 * Os_TE_577256 Os_TE_577256 Chr2 35582783 35582782 - COPI2_LTR 4733 0.0003 (1/2991) 0 * Os_TE_577257 Os_TE_577250 Chr2 35577841 35577842 + OSTE18 129 0.0020 (6/2998) 0 * * Os_TE_577245 Chr2 35576249 35576248 + RIREX_LTR 8828 0.0187 (55/2945) 0 * * Os_TE_577243 Chr2 35575776 35575777 + OSTE18 129 0.0004 (1/2642) 0 * * Os_TE_577241 Chr2 35574527 35574528 - SC-3_LTR 5748 0.0007 (2/2997) 0 * Os_TE_577240 Os_TE_577240 Chr2 35574523 35574522 + ORSiTERTOOT00296 5553 0.0007 (2/2998) 0 * Os_TE_577241 Os_TE_577216 Chr2 35551147 35551148 - SUSU 279 0.0003 (1/2995) 0 * * Os_TE_577209 Chr2 35542271 35542270 - GYPSY-A_LTR 8951 0.0003 (1/2981) 0 * * Os_TE_577206 Chr2 35540898 35540899 - RETROSAT3_LTR 11537 0.0184 (55/2993) 0 * * Os_TE_577197 Chr2 35536334 35536333 - ORSiTERT00100062 5674 0.0040 (12/2984) 0 * * Os_TE_577196 Chr2 35535401 35535402 - COPIA2-LTR_OS 6433 0.0007 (2/2996) 0 * Os_TE_577195 Os_TE_577195 Chr2 35535397 35535396 + COPIA2-LTR_OS 6433 0.0007 (2/2995) 0 * Os_TE_577196 Os_TE_577184 Chr2 35529637 35529638 - SC-8_LTR 4951 0.0003 (1/2986) 0 * Os_TE_577183 Os_TE_577183 Chr2 35529633 35529632 + SC-8_LTR 4951 0.0003 (1/2991) 0 * Os_TE_577184 Os_TE_577171 Chr2 35515826 35515827 - GYPSY-A_LTR 8951 0.0030 (9/2995) 0 * Os_TE_577170 Os_TE_577170 Chr2 35515822 35515821 + GYPSY-A_LTR 8951 0.0030 (9/2996) 0 * Os_TE_577171 Os_TE_577169 Chr2 35515730 35515731 + RETROSAT2LTRA 3112 0.0013 (4/2990) 0 * Os_TE_577168 Os_TE_577168 Chr2 35515726 35515725 - RETROSAT2LTRA 3112 0.0013 (4/2991) 0 * Os_TE_577169 Os_TE_577153 Chr2 35512285 35512284 + RIREX_LTR 8828 0.0031 (9/2895) 0 * * Os_TE_577140 Chr2 35505245 35505246 + STOWAWAY11_OS 292 0.0060 (18/2996) 0 * * Os_TE_577125 Chr2 35495757 35496073 + ORSgTEMT00101588 319 0.3824 (1111/2905) 1 Intact * Os_TE_577114 Chr2 35489378 35489377 + ORSgTEMT00900133 235 0.4993 (1104/2211) 0.08 * * Os_TE_577082 Chr2 35465153 35465299 - ORSgTEMT00501204 149 0.3916 (1145/2924) 1 Intact * Os_TE_577076 Chr2 35464596 35464916 - ORSgTEMT00101458 324 0.4255 (1156/2717) 1 Intact * Os_TE_577052 Chr2 35440436 35440298 + ORSgTETNOOT01568 135 0.3657 (1050/2871) 1 Intact * Os_TE_577021 Chr2 35424411 35424412 + COPIA2-LTR_OS 6433 0.0063 (19/2994) 0 * Os_TE_577020 Os_TE_577020 Chr2 35424407 35424406 - COPIA2-LTR_OS 6433 0.0063 (19/2996) 0 * Os_TE_577021 Os_TE_577017 Chr2 35421162 35421161 - STOWAWAY44_OS 240 0.0003 (1/2989) 0 * * Os_TE_576998 Chr2 35414281 35414280 + STOWAWAY45_OS 266 0.0003 (1/2988) 0 * Os_TE_576997 Os_TE_576997 Chr2 35414278 35414279 - STOWAWAY45_OS 266 0.0003 (1/2982) 0 * Os_TE_576998 Os_TE_576981 Chr2 35408618 35408617 - ORSgTEMT00900099 250 0.0015 (4/2681) 0 * * Os_TE_576977 Chr2 35408319 35408320 - MIDWAY 985 0.0003 (1/2959) 0 * * Os_TE_576965 Chr2 35407200 35407201 - ORSgTETNOOT01607 258 0.0003 (1/2970) 0 * * Os_TE_576947 Chr2 35395948 35395949 - TYPEM 227 0.0003 (1/2996) 0 * Os_TE_576946 Os_TE_576946 Chr2 35395946 35395945 + TYPEM 227 0.0003 (1/2996) 0 * Os_TE_576947 Os_TE_576944 Chr2 35393982 35393981 - HELITRON2_OS 15167 0.0007 (2/2995) 0 * Os_TE_576943 Os_TE_576943 Chr2 35393981 35393982 + HELITRON2_OS 15167 0.0007 (2/2995) 0 * Os_TE_576944 Os_TE_576882 Chr2 35361078 35361079 - OSTONOR1_LTR 6440 0.0003 (1/2973) 0 * Os_TE_576881 Os_TE_576881 Chr2 35361074 35361073 + OSTONOR1_LTR 6440 0.0003 (1/2974) 0 * Os_TE_576882 Os_TE_576880 Chr2 35360227 35360228 - OSTONOR1_LTR 6440 0.0003 (1/2980) 0 * Os_TE_576879 Os_TE_576879 Chr2 35360223 35360222 + OSTONOR1_LTR 6440 0.0003 (1/2981) 0 * Os_TE_576880 Os_TE_576863 Chr2 35352695 35352696 - RETROSAT2LTR 12796 0.0003 (1/2993) 0 * Os_TE_576862 Os_TE_576862 Chr2 35352693 35352692 + RETROSAT2LTR 12796 0.0003 (1/2994) 0 * Os_TE_576863 Os_TE_576851 Chr2 35349390 35349389 - COPIA2-LTR_OS 6433 0.0003 (1/2970) 0 * * Os_TE_576841 Chr2 35347962 35347961 + ORSgTEMT00500201 140 0.0003 (1/2986) 0 * Os_TE_576840 Os_TE_576840 Chr2 35347958 35347959 - ORSgTEMT00501356 145 0.0003 (1/2985) 0 * Os_TE_576841 Os_TE_576816 Chr2 35334963 35334962 - INDITTO 263 0.0137 (41/2999) 0 * * Os_TE_576813 Chr2 35334306 35334307 + AMYLTP 383 0.0311 (93/2993) 0 * Os_TE_576812 Os_TE_576812 Chr2 35334298 35334297 - AMYLTP 383 0.0314 (94/2994) 0 * Os_TE_576813 Os_TE_576809 Chr2 35333225 35333224 - STOWAWAY50_OS 174 0.0003 (1/2989) 0 * * Os_TE_576804 Chr2 35328887 35328888 - SC-8_LTR 4951 0.0030 (9/2990) 0 * Os_TE_576803 Os_TE_576803 Chr2 35328883 35328882 + SC-8_LTR 4951 0.0030 (9/2992) 0 * Os_TE_576804 Os_TE_576792 Chr2 35319570 35319571 - NDNA1TNA_OS 334 0.2150 (640/2977) 0 * Os_TE_576791 Os_TE_576791 Chr2 35319568 35319567 + NDNA1TNA_OS 334 0.1594 (446/2798) 0 * Os_TE_576792 Os_TE_576783 Chr2 35318086 35318085 - COPIA2-LTR_OS 6433 0.0003 (1/2969) 0 * * Os_TE_576782 Chr2 35317105 35317106 - CLOUD-6 508 0.6073 (1811/2982) 0 * Os_TE_576781 Os_TE_576781 Chr2 35317098 35317097 + CLOUD-6 508 0.6063 (1802/2972) 0 * Os_TE_576782 Os_TE_576780 Chr2 35316825 35316826 - TEMPINDAS 4259 0.2549 (755/2962) 0 * Os_TE_576779 Os_TE_576779 Chr2 35316818 35316817 + TEMPINDAS 4259 0.2585 (772/2987) 0 * Os_TE_576780 Os_TE_576778 Chr2 35316689 35316690 + ORSgTEMT00500373 144 0.0014 (4/2956) 0 * Os_TE_576777 Os_TE_576777 Chr2 35316688 35316687 - ORSgTEMT00500578 129 0.0013 (4/2978) 0 * Os_TE_576778 Os_TE_576764 Chr2 35309691 35309692 + SC-8_LTR 4951 0.0007 (2/2985) 0 * Os_TE_576763 Os_TE_576763 Chr2 35309687 35309686 - SC-8_LTR 4951 0.0007 (2/2982) 0 * Os_TE_576764 Os_TE_576710 Chr2 35270529 35270530 + TYPEU4 402 0.3788 (1131/2986) 0 * Os_TE_576709 Os_TE_576709 Chr2 35270528 35270527 - TYPEU1 380 0.3753 (1121/2987) 0 * Os_TE_576710 Os_TE_576698 Chr2 35266267 35266268 + ORSgTETNOOT00908 242 0.0021 (6/2910) 0 * Os_TE_576697 Os_TE_576697 Chr2 35266261 35266260 + ORSgTETNOOT01219 231 0.0024 (7/2962) 0 * Os_TE_576698 Os_TE_576696 Chr2 35266225 35265987 + ORSgTEMT01602181 239 0.1933 (574/2969) 1 Intact Os_TE_576695 Os_TE_576695 Chr2 35265987 35266225 - ORSgTEMT01601432 239 0.1959 (583/2976) 1 Intact Os_TE_576696 Os_TE_576694 Chr2 35265853 35265854 - RIRE5-LTR_OS 6427 0.0638 (190/2976) 0 * Os_TE_576693 Os_TE_576693 Chr2 35265846 35265845 + RIRE5-LTR_OS 6427 0.0634 (189/2981) 0 * Os_TE_576694 Os_TE_576687 Chr2 35262343 35262342 + SPMLIKE 10989 0.0007 (2/2996) 0 * * Os_TE_576683 Chr2 35260103 35260104 + NDNA1TNA_OS 334 0.0010 (3/2981) 0 * Os_TE_576682 Os_TE_576682 Chr2 35260101 35260100 - NDNA1TNA_OS 334 0.0010 (3/2981) 0 * Os_TE_576683 Os_TE_576662 Chr2 35248759 35248760 + MPING 430 0.0037 (11/2988) 0 * Os_TE_576661 Os_TE_576661 Chr2 35248757 35248756 - MPING 430 0.0148 (11/744) 0 * Os_TE_576662 Os_TE_576660 Chr2 35248065 35248064 - TREP215 239 0.0017 (5/2972) 0 * Os_TE_576659 Os_TE_576659 Chr2 35248062 35248063 + ORSgTEMT01602051 240 0.0017 (5/2981) 0 * Os_TE_576660 Os_TE_576641 Chr2 35237123 35237122 + ORSgTERT00201086 9728 0.0003 (1/2980) 0 * * Os_TE_576636 Chr2 35234073 35234074 + MERMITEA 1710 0.6663 (1967/2952) 0 * Os_TE_576635 Os_TE_576635 Chr2 35234065 35234064 - MERMITEA 1710 0.6706 (2001/2984) 0 * Os_TE_576636 Os_TE_576624 Chr2 35225843 35225844 + MPING 430 0.0003 (1/2962) 0 * Os_TE_576623 Os_TE_576623 Chr2 35225841 35225840 - MPING 430 0.0003 (1/2969) 0 * Os_TE_576624 Os_TE_576622 Chr2 35225800 35225799 - INDITTO 263 0.0515 (152/2950) 0 * Os_TE_576621 Os_TE_576621 Chr2 35225793 35225794 + INDITTO 263 0.0501 (149/2977) 0 * Os_TE_576622 Os_TE_576620 Chr2 35224754 35224755 - CASLET 354 0.0157 (47/2991) 0 * Os_TE_576619 Os_TE_576619 Chr2 35224752 35224751 + CASLET 354 0.0167 (50/2991) 0 * Os_TE_576620 Os_TE_576617 Chr2 35221994 35221995 + TWIFBIG 3567 0.0461 (138/2992) 0 * Os_TE_576616 Os_TE_576616 Chr2 35221987 35221986 - ORSiTETNOOT00216 3569 0.0452 (135/2989) 0 * Os_TE_576617 Os_TE_576613 Chr2 35219303 35219302 - SC-8_LTR 4951 0.0003 (1/2992) 0 * * Os_TE_576609 Chr2 35214806 35214807 - SC-3_LTR 5748 0.0003 (1/2996) 0 * Os_TE_576608 Os_TE_576608 Chr2 35214802 35214801 + ORSiTERTOOT00296 5553 0.0003 (1/2997) 0 * Os_TE_576609 Os_TE_576548 Chr2 35196075 35196074 + NDNA1TNA_OS 334 0.0429 (128/2983) 0 * Os_TE_576547 Os_TE_576547 Chr2 35196074 35196075 + ORSgTEMT00101674 340 0.0425 (127/2985) 0 * Os_TE_576548 Os_TE_576535 Chr2 35190776 35190777 + AMYLTP 383 0.0050 (15/2977) 0 * Os_TE_576534 Os_TE_576534 Chr2 35190768 35190767 - AMYLTP 383 0.0064 (19/2981) 0 * Os_TE_576535 Os_TE_576474 Chr2 35152891 35152892 - RIRE2_LTR 11306 0.0007 (2/2916) 0 * Os_TE_576473 Os_TE_576473 Chr2 35152887 35152886 + RIRE2_LTR 11306 0.0003 (1/2933) 0 * Os_TE_576474 Os_TE_576461 Chr2 35149038 35149039 - SINE9_OS 293 0.0100 (29/2890) 0 * * Os_TE_576456 Chr2 35147948 35147949 + COPI2_LTR 4733 0.0010 (3/2961) 0 * Os_TE_576455 Os_TE_576455 Chr2 35147944 35147943 - COPI2_LTR 4733 0.0007 (2/2959) 0 * Os_TE_576456 Os_TE_576451 Chr2 35146636 35146635 - SUSU 279 0.0017 (5/2991) 0 * * Os_TE_576447 Chr2 35145532 35145533 - COPIA2-LTR_OS 6433 0.0003 (1/2979) 0 * Os_TE_576446 Os_TE_576446 Chr2 35145528 35145527 + COPIA2-LTR_OS 6433 0.0003 (1/2979) 0 * Os_TE_576447 Os_TE_576435 Chr2 35137642 35137641 + ORSgTEMT01602413 239 0.0149 (30/2010) 0 * * Os_TE_576430 Chr2 35136552 35136553 + MuDR2_OS 6770 0.1964 (552/2811) 0 * * Os_TE_576423 Chr2 35135624 35135623 + ORSgTETNOOT00323 125 0.0017 (5/2998) 0 * * Os_TE_576421 Chr2 35132562 35132561 - MDR2 6967 0.0756 (225/2977) 0 * * Os_TE_576415 Chr2 35131969 35132363 - ORSgTEMT03000025 382 0.4268 (913/2139) 1 Intact * Os_TE_576414 Chr2 35131701 35131702 - RIREX_LTR 8828 0.0003 (1/2988) 0 * Os_TE_576413 Os_TE_576413 Chr2 35131697 35131696 + RIREX_LTR 8828 0.0003 (1/2970) 0 * Os_TE_576414 Os_TE_576403 Chr2 35129530 35129531 + UNIQUE 158 0.1811 (199/1099) 0 * * Os_TE_576402 Chr2 35129467 35129468 + TWIF 586 0.0007 (2/2880) 0 * Os_TE_576401 Os_TE_576401 Chr2 35129460 35129459 - ORSiTETNOOT00134 607 0.0011 (1/915) 0 * Os_TE_576402 Os_TE_576400 Chr2 35129410 35129288 + ORSgTEMT00502171 134 0.3194 (889/2783) 1 Intact Os_TE_576399 Os_TE_576399 Chr2 35129279 35129405 + ORSgTEMT00500852 140 0.3083 (895/2903) 1 Intact Os_TE_576400 Os_TE_576389 Chr2 35128275 35128276 + MPING 430 0.0260 (77/2966) 0 * Os_TE_576388 Os_TE_576388 Chr2 35128273 35128272 - MPING 430 0.0244 (73/2986) 0 * Os_TE_576389 Os_TE_576387 Chr2 35128239 35128240 + COPIA2-LTR_OS 6433 0.0017 (5/2884) 0 * Os_TE_576386 Os_TE_576386 Chr2 35128235 35128234 - COPIA2-LTR_OS 6433 0.0048 (5/1050) 0 * Os_TE_576387 Os_TE_576382 Chr2 35127486 35127487 + ORSgTERTOOT00009 12852 0.0586 (153/2613) 0 * * Os_TE_576381 Chr2 35127425 35127426 + RETRO3_LTR 12751 0.0015 (4/2702) -1 * * Os_TE_576379 Chr2 35126907 35126906 + ORSgTETNOOT01668 244 0.0387 (108/2788) 0 * * Os_TE_576378 Chr2 35126719 35126720 - INDITTO 263 0.0027 (6/2191) 0 * Os_TE_576377 Os_TE_576377 Chr2 35126706 35126705 - RPO_OS 1983 0.0410 (110/2683) 0 * Os_TE_576378 Os_TE_576376 Chr2 35126705 35126706 + RPO_OS 1983 0.0888 (96/1081) 0 * * Os_TE_576375 Chr2 35126685 35126684 - ORSgTEMT01400012 212 0.5355 (1163/2172) 0 * * Os_TE_576374 Chr2 35125652 35125651 + RETRO2_LTR 12874 0.0381 (114/2993) 0 * * Os_TE_576372 Chr2 35125194 35125195 + ORSiTERTOOT00296 5553 0.0067 (20/2974) 0 * Os_TE_576371 Os_TE_576371 Chr2 35125190 35125189 - SC-3_LTR 5748 0.0067 (20/2966) 0 * Os_TE_576372 Os_TE_576366 Chr2 35119418 35119417 + ORSgTEMT00600576 351 0.0065 (18/2786) 0 * * Os_TE_576364 Chr2 35118334 35118335 - COPIA2-LTR_OS 6433 0.0014 (2/1440) 0 * Os_TE_576363 Os_TE_576363 Chr2 35118330 35118329 + COPIA2-LTR_OS 6433 0.0007 (2/2996) 0 * Os_TE_576364 Os_TE_576362 Chr2 35115360 35115361 + SC-4_LTR 5218 0.0020 (6/2999) 0 * * Os_TE_576353 Chr2 35111399 35110435 - SZ-9LTR 965 0.2984 (893/2993) 1 Intact Os_TE_576352 Os_TE_576352 Chr2 35110435 35111399 + SZ-9LTR 965 0.2982 (893/2995) 1 Intact Os_TE_576353 Os_TE_576349 Chr2 35107520 35107283 - ORSgTEMT01600768 234 0.7416 (1122/1513) 1 Intact * Os_TE_576342 Chr2 35106801 35106800 - ORSgTEMT02400246 177 0.0223 (66/2966) 0 * * Os_TE_576337 Chr2 35102499 35102498 - TYPEM 227 0.0020 (5/2493) 0 * * Os_TE_576334 Chr2 35101643 35101642 - ORSgTEMT01602082 215 0.0013 (4/2997) 0 * * Os_TE_576330 Chr2 35101360 35101359 + GYPSY1-LTR_OS 8900 0.1195 (357/2987) 0 * * Os_TE_576329 Chr2 35101082 35101083 + ORSgTEMT00100531 325 0.0319 (66/2068) 0 * * Os_TE_576323 Chr2 35099536 35099762 + ORSgTEMT01602141 239 0.8715 (2171/2491) 1 Intact * Os_TE_576315 Chr2 35095632 35095633 + WUWU 113 0.0003 (1/2986) 0 * Os_TE_576314 Os_TE_576314 Chr2 35095624 35095623 + WUWU 113 0.0003 (1/2986) 0 * Os_TE_576315 Os_TE_576313 Chr2 35094787 35094788 - SZ-55_LTR 10318 0.0003 (1/2994) 0 * Os_TE_576312 Os_TE_576312 Chr2 35094783 35094782 + SZ-55_LTR 10318 0.0003 (1/2991) 0 * Os_TE_576313 Os_TE_576311 Chr2 35094590 35094591 + ORSgTETNOOT01834 251 0.0024 (7/2978) 0 * Os_TE_576310 Os_TE_576310 Chr2 35094588 35094587 + ORSgTETNOOT01998 254 0.0023 (7/2992) 0 * Os_TE_576311 Os_TE_576309 Chr2 35094583 35094584 + RETRO2_LTR 12874 0.0047 (14/2990) 0 * Os_TE_576308 Os_TE_576308 Chr2 35094579 35094578 - RETRO2_LTR 12874 0.0044 (13/2981) 0 * Os_TE_576309 Os_TE_576275 Chr2 35079970 35079971 + STOWAWAY51_OS 246 0.0098 (29/2964) 0 * * Os_TE_576239 Chr2 35070781 35070782 + ORSiTERTOOT00296 5553 0.0003 (1/2993) 0 * Os_TE_576238 Os_TE_576238 Chr2 35070777 35070776 - SC-3_LTR 5748 0.0003 (1/2993) 0 * Os_TE_576239 Os_TE_576225 Chr2 35062641 35062640 + ORSgTEMT01601122 212 0.0273 (78/2855) 0 * Os_TE_576224 Os_TE_576224 Chr2 35062640 35062641 + STOWAWAY21_OS 243 0.0282 (83/2947) 0 * Os_TE_576225 Os_TE_576214 Chr2 35055637 35055638 + SZ-40LTR 2465 0.0020 (6/2973) 0 * Os_TE_576213 Os_TE_576213 Chr2 35055633 35055632 - GYPSY-A_LTR 8951 0.0020 (6/2972) 0 * Os_TE_576214 Os_TE_576212 Chr2 35055386 35055385 - TRUNCATOR 2918 0.0003 (1/2986) 0 * * Os_TE_576205 Chr2 35054392 35054393 - COPIA2-LTR_OS 6433 0.0003 (1/2986) 0 * * Os_TE_576202 Chr2 35052111 35052112 - RETRO2_LTR 12874 0.0007 (2/2999) 0 * Os_TE_576201 Os_TE_576201 Chr2 35052107 35052106 + SZLTR 1249 0.0007 (2/2999) 0 * Os_TE_576202 Os_TE_576188 Chr2 35043335 35043336 + ORSiTERTOOT00296 5553 0.4120 (1232/2990) 0 * Os_TE_576187 Os_TE_576187 Chr2 35043331 35043330 - SC-3_LTR 5748 0.4107 (1228/2990) 0 * Os_TE_576188 Os_TE_576168 Chr2 35030397 35030398 - SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_576167 Os_TE_576167 Chr2 35030393 35030392 + SC-8_LTR 4951 0.0003 (1/2989) 0 * Os_TE_576168 Os_TE_576164 Chr2 35026000 35025999 - ORSgTEMT02400248 224 0.0003 (1/2941) 0 * * Os_TE_576156 Chr2 35023719 35023720 + MPING 430 0.0007 (2/2937) 0 * Os_TE_576155 Os_TE_576155 Chr2 35023717 35023716 - MPING 430 0.0003 (1/2942) 0 * Os_TE_576156 Os_TE_576154 Chr2 35023590 35023591 + INDITTO 263 0.0031 (9/2939) 0 * Os_TE_576153 Os_TE_576153 Chr2 35023588 35023587 - INDITTO 263 0.0024 (7/2969) 0 * Os_TE_576154 Os_TE_576135 Chr2 35020564 35020565 - OSTE17 734 0.0027 (8/2981) 0 * Os_TE_576134 Os_TE_576134 Chr2 35020556 35020555 - OSTE17 734 0.0027 (8/2980) 0 * Os_TE_576135 Os_TE_576132 Chr2 35020110 35020111 + RIREX_LTR 8828 0.0003 (1/2948) 0 * * Os_TE_576130 Chr2 35019853 35019852 - STOWAWAY10_OS 259 0.1111 (331/2979) 0 * * Os_TE_576125 Chr2 35019002 35019003 - COPIA2-LTR_OS 6433 0.0003 (1/2967) 0 * Os_TE_576124 Os_TE_576124 Chr2 35018998 35018997 + COPIA2-LTR_OS 6433 0.0003 (1/2969) 0 * Os_TE_576125 Os_TE_576122 Chr2 35018861 35018623 - ORSgTEMT01601493 303 0.2038 (598/2934) 1 Intact Os_TE_576121 Os_TE_576121 Chr2 35018623 35018861 + ORSgTEMT01602181 239 0.2119 (627/2959) 1 Intact Os_TE_576122 Os_TE_576107 Chr2 35009561 35009562 + ORSiTERTOOT00027 10853 0.0003 (1/2862) 0 * * Os_TE_576104 Chr2 35003621 35003622 + ORSiTERTOOT00296 5553 0.0020 (6/2996) 0 * Os_TE_576103 Os_TE_576103 Chr2 35003617 35003616 - SC-3_LTR 5748 0.0020 (6/2995) 0 * Os_TE_576104 Os_TE_576102 Chr2 35002729 35002730 + TWIF 586 0.0003 (1/2992) 0 * * Os_TE_576092 Chr2 35000064 35000065 + STOWAWAY13_OS 251 0.1293 (387/2994) 0 * Os_TE_576091 Os_TE_576091 Chr2 35000063 35000062 - STOWAWAY13_OS 251 0.1287 (385/2991) 0 * Os_TE_576092 Os_TE_576090 Chr2 34999630 34999631 + F569 228 0.0007 (2/2988) 0 * Os_TE_576089 Os_TE_576089 Chr2 34999628 34999627 - F569 228 0.0007 (2/2993) 0 * Os_TE_576090 Os_TE_576086 Chr2 34997690 34997689 + NDNA1TNA_OS 334 0.0003 (1/2970) 0 * * Os_TE_576085 Chr2 34992693 34992694 + ORSiCMCM00100019 2717 0.0003 (1/2996) 0 * Os_TE_576084 Os_TE_576084 Chr2 34992689 34992688 - TRUNCATOR2_LTR 2904 0.0003 (1/2996) 0 * Os_TE_576085 Os_TE_576082 Chr2 34992308 34992309 - COPI2_LTR 4733 0.0004 (1/2672) 0 * Os_TE_576081 Os_TE_576081 Chr2 34992304 34992303 + COPI2_LTR 4733 0.0003 (1/2993) 0 * Os_TE_576082 Os_TE_576072 Chr2 34989684 34989685 + TOS17LTR 138 0.0003 (1/2998) 0 * Os_TE_576071 Os_TE_576071 Chr2 34989680 34989679 - TOS17LTR 138 0.0003 (1/2995) 0 * Os_TE_576072 Os_TE_576067 Chr2 34987229 34987230 - SC-3_LTR 5748 0.0023 (7/2980) 0 * Os_TE_576066 Os_TE_576066 Chr2 34987225 34987224 + ORSiTERTOOT00296 5553 0.0023 (7/2982) 0 * Os_TE_576067 Os_TE_576065 Chr2 34986889 34986890 + SC-7_LTR 4431 0.0003 (1/2990) 0 * Os_TE_576064 Os_TE_576064 Chr2 34986885 34986884 - SC-7_LTR 4431 0.0003 (1/2992) 0 * Os_TE_576065 Os_TE_576061 Chr2 34983995 34983994 - ORSiTERTOOT00333 4719 0.0003 (1/2979) 0 * * Os_TE_576059 Chr2 34982539 34982538 + ORSgTEMT01602181 239 0.1014 (285/2811) 0 * Os_TE_576058 Os_TE_576058 Chr2 34982536 34982537 - ORSgTEMT01601432 239 0.1157 (330/2853) 0 * Os_TE_576059 Os_TE_576052 Chr2 34979870 34979871 + NDNA1TNA_OS 334 0.0031 (9/2949) 0 * Os_TE_576051 Os_TE_576051 Chr2 34979868 34979867 - NDNA1TNA_OS 334 0.0027 (8/2934) 0 * Os_TE_576052 Os_TE_576049 Chr2 34979003 34979002 + NDNA1TNA_OS 334 0.0047 (14/2996) 0 * Os_TE_576048 Os_TE_576048 Chr2 34979001 34979002 - ORSgTEMT00100799 337 0.0047 (14/2995) 0 * Os_TE_576049 Os_TE_576036 Chr2 34975347 34975348 + COPIA2-LTR_OS 6433 0.0017 (5/2991) 0 * Os_TE_576035 Os_TE_576035 Chr2 34975343 34975342 - COPIA2-LTR_OS 6433 0.0020 (6/2990) 0 * Os_TE_576036 Os_TE_576031 Chr2 34972459 34972119 + ORSgTEMT00100949 340 0.2395 (714/2981) 1 Intact Os_TE_576030 Os_TE_576030 Chr2 34972120 34972459 + ORSgTEMT00100531 325 0.2443 (731/2992) 1 Intact Os_TE_576031 Os_TE_576027 Chr2 34969990 34969991 - RPO_OS 1983 0.0017 (5/2996) 0 * Os_TE_576026 Os_TE_576026 Chr2 34969987 34969986 + RPO_OS 1983 0.0013 (4/2994) 0 * Os_TE_576027 Os_TE_576025 Chr2 34969864 34969865 - SC-3_LTR 5748 0.0057 (17/2997) 0 * Os_TE_576024 Os_TE_576024 Chr2 34969860 34969859 + ORSiTERTOOT00296 5553 0.0063 (19/2997) 0 * Os_TE_576025 Os_TE_576015 Chr2 34961583 34961584 + ORSgTETNOOT00908 242 0.0207 (62/2995) 0 * * Os_TE_576011 Chr2 34958070 34958071 - ORSiTETNOOT00134 607 0.0003 (1/2987) 0 * * Os_TE_576003 Chr2 34956406 34956407 + ORSgTEMT00700017 386 0.0004 (1/2839) 0 * * Os_TE_575992 Chr2 34954685 34954686 - COPI2_LTR 4733 0.0040 (12/2999) 0 * Os_TE_575991 Os_TE_575991 Chr2 34954681 34954680 + COPI2_LTR 4733 0.0040 (12/2998) 0 * Os_TE_575992 Os_TE_575989 Chr2 34954125 34954124 + NDNA1TNA_OS 334 0.0013 (3/2374) 0 * Os_TE_575988 Os_TE_575988 Chr2 34954109 34954110 + ORSgTEMT00101674 340 0.2223 (661/2973) 0 * Os_TE_575989 Os_TE_575987 Chr2 34954059 34954060 - RIREX_LTR 8828 0.0037 (11/2955) 0 * Os_TE_575986 Os_TE_575986 Chr2 34954055 34954054 + RIREX_LTR 8828 0.0037 (11/2967) 0 * Os_TE_575987 Os_TE_575983 Chr2 34952344 34952345 + ORSgTETNOOT01668 244 0.0020 (6/2953) 0 * * Os_TE_575982 Chr2 34952041 34952040 - WUJI 257 0.0225 (67/2975) 0 * * Os_TE_575952 Chr2 34930308 34930307 - ORSiTETNOOT00134 607 0.0003 (1/2978) 0 * * Os_TE_575935 Chr2 34927749 34927748 + ORSiTERTOOT00296 5553 0.0003 (1/2998) 0 * * Os_TE_575902 Chr2 34905214 34905215 - SC-3_LTR 5748 0.0003 (1/2994) 0 * Os_TE_575901 Os_TE_575901 Chr2 34905210 34905209 + ORSiTERTOOT00296 5553 0.0003 (1/2995) 0 * Os_TE_575902 Os_TE_575895 Chr2 34902920 34902919 - HATOS1 3488 0.0351 (105/2994) 0 * * Os_TE_575890 Chr2 34901440 34901439 + ORSgTEMT01700044 149 0.0023 (7/2988) 0 * * Os_TE_575884 Chr2 34899674 34899675 - ORSgTETNOOT00591 258 0.0010 (3/2970) 0 * * Os_TE_575882 Chr2 34899580 34899581 + COPIA2-LTR_OS 6433 0.0168 (50/2976) 0 * Os_TE_575881 Os_TE_575881 Chr2 34899576 34899575 - COPIA2-LTR_OS 6433 0.0158 (47/2972) 0 * Os_TE_575882 Os_TE_575878 Chr2 34899051 34899050 + COPIA2-LTR_OS 6433 0.0020 (6/2994) 0 * * Os_TE_575861 Chr2 34896974 34896975 - COPIA2-LTR_OS 6433 0.0007 (2/2994) 0 * Os_TE_575860 Os_TE_575860 Chr2 34896970 34896969 + COPIA2-LTR_OS 6433 0.0007 (2/2995) 0 * Os_TE_575861 Os_TE_575844 Chr2 34894308 34894309 + RETRO2A_LTR 12895 0.0033 (9/2756) 0 * * Os_TE_575841 Chr2 34893964 34893965 + ORSgTETNOOT00355 222 0.0027 (8/2991) 0 * * Os_TE_575829 Chr2 34889304 34889305 - SZ-55_LTR 10318 0.0007 (2/2999) 0 * Os_TE_575828 Os_TE_575828 Chr2 34889300 34889299 + SZ-55_LTR 10318 0.0007 (2/2998) 0 * Os_TE_575829 Os_TE_575823 Chr2 34885747 34885746 + MUDRN5_OS 374 0.0003 (1/2984) 0 * * Os_TE_575776 Chr2 34874611 34874612 + RETRO1_LTR 8314 0.0030 (9/2955) 0 * Os_TE_575775 Os_TE_575775 Chr2 34874607 34874606 - RETRO1_LTR 8314 0.0027 (8/2958) 0 * Os_TE_575776 Os_TE_575774 Chr2 34874287 34874288 + TELIA 141 0.0007 (2/2964) 0 * Os_TE_575773 Os_TE_575773 Chr2 34874279 34874278 - TELIA 141 0.0007 (2/2970) 0 * Os_TE_575774 Os_TE_575734 Chr2 34860281 34860280 + ORSgTEMT01601993 233 0.0018 (5/2741) 0 * * Os_TE_575733 Chr2 34860254 34860255 - AMYLTP 383 0.6797 (1935/2847) 0 * Os_TE_575732 Os_TE_575732 Chr2 34860246 34860245 + AMYLTP 383 0.6351 (1591/2505) 0 * Os_TE_575733 Os_TE_575727 Chr2 34856289 34856290 - RIREX_LTR 8828 0.0004 (1/2738) 0 * * Os_TE_575705 Chr2 34850620 34850621 + AMYLTP 383 0.0017 (5/2974) 0 * Os_TE_575704 Os_TE_575704 Chr2 34850612 34850611 - AMYLTP 383 0.0013 (4/2971) 0 * Os_TE_575705 Os_TE_575703 Chr2 34850509 34850510 + RIREX_LTR 8828 0.0003 (1/2975) 0 * Os_TE_575702 Os_TE_575702 Chr2 34850505 34850504 - RIREX_LTR 8828 0.0003 (1/2972) 0 * Os_TE_575703 Os_TE_575696 Chr2 34848658 34848659 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * * Os_TE_575686 Chr2 34847257 34847258 - SZ-35LTR 3853 0.3067 (874/2850) 0 * Os_TE_575685 Os_TE_575685 Chr2 34847253 34847252 + RETROSAT4_LTR 13504 0.2763 (784/2837) 0 * Os_TE_575686 Os_TE_575658 Chr2 34837728 34837729 + MPING 430 0.0006 (1/1663) 0 * Os_TE_575657 Os_TE_575657 Chr2 34837726 34837725 - MPING 430 0.0013 (1/771) 0 * Os_TE_575658 Os_TE_575634 Chr2 34832397 34832252 + ECSR 154 0.1477 (440/2980) -1 Intact * Os_TE_575633 Chr2 34826857 34826856 - ORSgTEMT02400246 177 0.0003 (1/2941) 0 * Os_TE_575632 Os_TE_575632 Chr2 34826856 34826857 - TYPEM 227 0.0003 (1/2939) 0 * Os_TE_575633 Os_TE_575627 Chr2 34823834 34823835 - COPI2_LTR 4733 0.0007 (2/2974) 0 * * Os_TE_575625 Chr2 34823013 34823012 - SZ-48LTR 3632 0.7135 (2137/2995) 0 * * Os_TE_575623 Chr2 34821133 34821134 - MuDR3_OS 8604 0.0512 (152/2970) 0 * Os_TE_575622 Os_TE_575622 Chr2 34821124 34821123 - MuDR3_OS 8604 0.0531 (158/2974) 0 * Os_TE_575623 Os_TE_575618 Chr2 34819064 34819063 + STOWAWAY51_OS 246 0.0007 (2/2939) 0 * * Os_TE_575615 Chr2 34818788 34818787 + OLO24 345 0.0004 (1/2786) 0 * * Os_TE_575614 Chr2 34818635 34818397 + ORSgTEMT01602181 239 0.2467 (668/2708) 1 Intact Os_TE_575613 Os_TE_575613 Chr2 34818397 34818635 - ORSgTEMT01601432 239 0.2211 (611/2764) 1 Intact Os_TE_575614 Os_TE_575608 Chr2 34817483 34817482 - STOWAWAY51_OS 246 0.0003 (1/2970) 0 * * Os_TE_575587 Chr2 34802357 34802358 - RIREX_LTR 8828 0.0030 (9/2986) 0 * Os_TE_575586 Os_TE_575586 Chr2 34802353 34802352 + RIREX_LTR 8828 0.0027 (8/2973) 0 * Os_TE_575587 Os_TE_575585 Chr2 34801822 34801823 - NDNA1TNA_OS 334 0.0019 (5/2575) 0 * Os_TE_575584 Os_TE_575584 Chr2 34801820 34801819 + NDNA1TNA_OS 334 0.0017 (5/2949) 0 * Os_TE_575585 Os_TE_575561 Chr2 34791069 34790829 + ORSgTETNOOT00908 242 0.1334 (400/2998) 1 Intact * Os_TE_575560 Chr2 34790708 34790709 - SC-3_LTR 5748 0.0003 (1/2994) 0 * Os_TE_575559 Os_TE_575559 Chr2 34790706 34790705 + ORSiTERTOOT00296 5553 0.0003 (1/2996) 0 * Os_TE_575560 Os_TE_575544 Chr2 34782644 34782645 + F770 284 0.1113 (333/2993) 0 * Os_TE_575543 Os_TE_575543 Chr2 34782642 34782641 - F770 284 0.1152 (345/2996) 0 * Os_TE_575544 Os_TE_575542 Chr2 34782046 34782045 - NDNA1TNA_OS 334 0.0030 (9/2979) 0 * Os_TE_575541 Os_TE_575541 Chr2 34782045 34782046 + NDNA1TNA_OS 334 0.0030 (9/2969) 0 * Os_TE_575542 Os_TE_575540 Chr2 34781628 34773449 - RIREX_LTR 8828 0.1322 (396/2996) 1 Intact * Os_TE_575534 Chr2 34771972 34771973 + SZ-48LTR 3632 0.7330 (2172/2963) 0 * Os_TE_575533 Os_TE_575533 Chr2 34771968 34771967 - SZ-48LTR 3632 0.7195 (2088/2902) 0 * Os_TE_575534 Os_TE_575531 Chr2 34768870 34768737 + ORSiTEMT03300001 145 0.2397 (700/2920) 1 Intact Os_TE_575530 Os_TE_575530 Chr2 34768721 34768864 - UNIQUE 158 0.2224 (659/2963) 1 Intact Os_TE_575531 Os_TE_575514 Chr2 34763675 34763674 - INDITTO 263 0.0010 (3/2892) 0 * * Os_TE_575513 Chr2 34763325 34762054 - CLOUD-6 508 0.2183 (638/2922) 1 Intact Os_TE_575512 Os_TE_575512 Chr2 34762054 34763325 - CLOUD-6 508 0.2071 (591/2854) 1 Intact Os_TE_575513 Os_TE_575511 Chr2 34761953 34760893 - RPO_OS 1983 0.2294 (675/2943) 1 Intact * Os_TE_575495 Chr2 34745833 34745832 + ORSgTEMT00300064 397 0.0027 (8/2959) 0 * * Os_TE_575483 Chr2 34741930 34741778 + ORSgTEMT00500560 148 0.8637 (2567/2972) 1 Intact Os_TE_575479 Os_TE_575479 Chr2 34741772 34741911 + ORSgTEMT00501601 153 0.8556 (2554/2985) 1 Intact Os_TE_575483 Os_TE_575474 Chr2 34741000 34740753 - ORSgTEMT00901723 248 0.8048 (2330/2895) 1 Intact Os_TE_575473 Os_TE_575473 Chr2 34740760 34740998 + ORSgTEMT00900079 241 0.8066 (2319/2875) 1 Intact Os_TE_575474 Os_TE_575470 Chr2 34740324 34740325 + RETROSAT2LTR 12796 0.0027 (8/2922) 0 * Os_TE_575469 Os_TE_575469 Chr2 34740322 34740321 - RETROSAT2LTR 12796 0.0028 (8/2889) 0 * Os_TE_575470 Os_TE_575468 Chr2 34739894 34739895 + MERMITEA 1710 0.0013 (4/2993) 0 * * Os_TE_575428 Chr2 34712223 34712224 - COPIA2-LTR_OS 6433 0.0211 (63/2985) 0 * Os_TE_575427 Os_TE_575427 Chr2 34712219 34712218 + COPIA2-LTR_OS 6433 0.0221 (66/2989) 0 * Os_TE_575428 Os_TE_575426 Chr2 34711893 34711892 - TYPEM 227 0.0869 (259/2981) 0 * * Os_TE_575420 Chr2 34711427 34711426 + ORSgTETNOOT00908 242 0.7695 (2260/2937) 0 * * Os_TE_575396 Chr2 34705531 34705530 - STOWAWAY51_OS 246 0.0172 (51/2963) 0 * * Os_TE_575357 Chr2 34689772 34689773 - COPI2_LTR 4733 0.0003 (1/2997) 0 * Os_TE_575356 Os_TE_575356 Chr2 34689768 34689767 + COPI2_LTR 4733 0.0003 (1/2997) 0 * Os_TE_575357 Os_TE_575338 Chr2 34676410 34676409 - ORSgTEMT02400246 177 0.0003 (1/2992) 0 * * Os_TE_575329 Chr2 34673881 34673882 + INDITTO 263 0.0319 (95/2980) 0 * * Os_TE_575320 Chr2 34670387 34670386 + ORSgTEMT01601591 242 0.0007 (2/2991) 0 * Os_TE_575319 Os_TE_575319 Chr2 34670381 34670382 + STOWAWAY51_OS 246 0.0007 (2/2996) 0 * Os_TE_575320 Os_TE_575311 Chr2 34666238 34666237 - ORSgTEMT01601768 238 0.0986 (295/2993) 0 * * Os_TE_575291 Chr2 34664345 34664346 - MDR2 6967 0.0164 (46/2810) 0 * Os_TE_575290 Os_TE_575290 Chr2 34664336 34664335 + MDR2 6967 0.0160 (45/2805) 0 * Os_TE_575291 Os_TE_575270 Chr2 34653901 34653902 - MPING 430 0.0004 (1/2603) 0 * Os_TE_575269 Os_TE_575269 Chr2 34653899 34653898 + MPING 430 0.0003 (1/2998) 0 * Os_TE_575270 Os_TE_575255 Chr2 34638115 34638116 - SZ-4_LTR 5991 0.0003 (1/2996) 0 * Os_TE_575254 Os_TE_575254 Chr2 34638111 34638110 + SZ-4_LTR 5991 0.0003 (1/2997) 0 * Os_TE_575255 Os_TE_575216 Chr2 34625187 34625188 + COPIA2-LTR_OS 6433 0.0150 (45/2992) 0 * Os_TE_575215 Os_TE_575215 Chr2 34625183 34625182 - COPIA2-LTR_OS 6433 0.0147 (44/2991) 0 * Os_TE_575216 Os_TE_575209 Chr2 34624208 34624207 + ORSiTERTOOT00321 5685 0.0003 (1/2925) 0 * * Os_TE_575189 Chr2 34604225 34604226 - COPIA2-LTR_OS 6433 0.0037 (11/2990) 0 * Os_TE_575188 Os_TE_575188 Chr2 34604220 34604219 + COPIA2-LTR_OS 6433 0.0037 (11/2991) 0 * Os_TE_575189 Os_TE_575169 Chr2 34595255 34595256 + NDNA1TNA_OS 334 0.6896 (2059/2986) 0 * * Os_TE_575166 Chr2 34595111 34595110 + ORSgTEMT01601983 238 0.0013 (4/2983) 0 * Os_TE_575165 Os_TE_575165 Chr2 34595108 34595109 + ORSgTEMT01602181 239 0.0017 (5/2989) 0 * Os_TE_575166 Os_TE_575127 Chr2 34583584 34583585 + NDNA1TNA_OS 334 0.0003 (1/2999) 0 * Os_TE_575126 Os_TE_575126 Chr2 34583582 34583581 - NDNA1TNA_OS 334 0.0003 (1/2998) 0 * Os_TE_575127 Os_TE_575125 Chr2 34583066 34583067 + MuDR2_OS 6770 0.0097 (29/2980) 0 * Os_TE_575124 Os_TE_575124 Chr2 34583058 34583057 - MuDR2_OS 6770 0.0144 (43/2993) 0 * Os_TE_575125 Os_TE_575123 Chr2 34583036 34583035 - STOWAWAY51_OS 246 0.0010 (3/2990) 0 * * Os_TE_575115 Chr2 34582401 34582400 - STOWAWAY51_OS 246 0.0003 (1/2992) 0 * * Os_TE_575109 Chr2 34581113 34581114 - STOWAWAY51_OS 246 0.0003 (1/2936) 0 * * Os_TE_575100 Chr2 34579954 34579955 + STOWAWAY1_OS 149 0.0155 (46/2961) 0 * * Os_TE_575099 Chr2 34578105 34578106 - ORSgTETNOOT02539 260 0.6519 (1897/2910) 0 * Os_TE_575098 Os_TE_575098 Chr2 34578103 34578102 + INDITTO 263 0.6305 (1882/2985) 0 * Os_TE_575099 Os_TE_575096 Chr2 34577445 34577446 - ORSgTETNOOT01930 140 0.0153 (46/2997) 0 * * Os_TE_575095 Chr2 34577403 34577402 + STOWAWAY44_OS 240 0.0003 (1/2996) 0 * * Os_TE_575093 Chr2 34576772 34576773 - ORSgTEMT00900892 250 0.0513 (46/896) 0 * * Os_TE_575091 Chr2 34576293 34576294 + INDITTO 263 0.5847 (1677/2868) 0 * Os_TE_575090 Os_TE_575090 Chr2 34576291 34576290 - INDITTO 263 0.5910 (1689/2858) 0 * Os_TE_575091 Os_TE_575079 Chr2 34570322 34570321 + NDNA1TNA_OS 334 0.0180 (54/2993) 0 * * Os_TE_575064 Chr2 34561603 34561604 - MERMITE18B 1306 0.0181 (46/2547) 0 * Os_TE_575063 Os_TE_575063 Chr2 34561595 34561594 - MERMITE18B 1306 0.0837 (228/2724) 0 * Os_TE_575064 Os_TE_575059 Chr2 34560681 34560382 - ORSgTEMT00501414 300 0.2863 (782/2731) 1 Intact * Os_TE_575043 Chr2 34557204 34557203 - ORSgTEMT00300008 396 0.5135 (1240/2415) 0 * * Os_TE_575039 Chr2 34548950 34548951 - RETROSAT4_LTR 13504 0.1519 (351/2310) 0 * * Os_TE_575036 Chr2 34545199 34544962 - ORSgTEMT01602413 239 0.3425 (775/2263) 1 Intact Os_TE_575034 Os_TE_575034 Chr2 34544962 34545199 - ORSgTEMT01602413 239 0.3677 (760/2067) 1 Intact Os_TE_575036 Os_TE_575033 Chr2 34544937 34544936 - UNIQUE 158 0.6207 (1234/1988) 0 * * Os_TE_575032 Chr2 34544484 34544336 + ORSgTEMT00502025 149 0.2923 (771/2638) 1 Intact * Os_TE_575020 Chr2 34539193 34539194 + AMYLTP 383 0.0135 (36/2659) 0 * * Os_TE_575010 Chr2 34537025 34536911 - SZ-58LTR 114 0.7374 (789/1070) 1 Intact * Os_TE_574988 Chr2 34529869 34529870 - AMYLTP 383 0.0004 (1/2645) 0 * Os_TE_574987 Os_TE_574987 Chr2 34529861 34529860 + AMYLTP 383 0.0004 (1/2564) 0 * Os_TE_574988 Os_TE_574986 Chr2 34529831 34529832 + MERMITEB 1610 0.0799 (217/2717) 0 * Os_TE_574985 Os_TE_574985 Chr2 34529827 34529826 + MERMITEB 1610 0.0472 (125/2647) 0 * Os_TE_574986 Os_TE_574984 Chr2 34529629 34521045 - MuDR3_OS 8604 0.2040 (540/2647) 1 Intact Os_TE_574978 Os_TE_574978 Chr2 34521042 34529629 - MuDR3_OS 8604 0.2739 (761/2778) 1 Intact Os_TE_574984 Os_TE_574977 Chr2 34520895 34520894 + RIREX_LTR 8828 0.0025 (7/2751) 0 * * Os_TE_574971 Chr2 34519937 34519938 + F770 284 0.5610 (1546/2756) 0 * * Os_TE_574970 Chr2 34519477 34519478 - ORSgTEMT00900965 216 0.0702 (182/2593) 0 * * Os_TE_574967 Chr2 34518502 34518503 - CACTA-I 1124 0.0222 (62/2798) 0 * * Os_TE_574957 Chr2 34515704 34515703 + SZ-19LTR 1513 0.0344 (91/2648) 0 * * Os_TE_574954 Chr2 34515662 34515661 - RETROSAT2LTR 12796 0.6018 (1564/2599) 0 * * Os_TE_574922 Chr2 34499511 34499773 - INDITTO 263 0.3048 (780/2559) 1 Intact * Os_TE_574916 Chr2 34495625 34495247 + BUHUI 375 0.3058 (785/2567) 1 Intact * Os_TE_574882 Chr2 34483201 34483202 + ORSiTERTOOT00296 5553 0.0003 (1/2994) 0 * Os_TE_574881 Os_TE_574881 Chr2 34483197 34483196 - SC-3_LTR 5748 0.0003 (1/2996) 0 * Os_TE_574882 Os_TE_574876 Chr2 34481087 34481088 + SC-8_LTR 4951 0.0003 (1/2974) 0 * Os_TE_574875 Os_TE_574875 Chr2 34481083 34481082 - SC-8_LTR 4951 0.0003 (1/2968) 0 * Os_TE_574876 Os_TE_574872 Chr2 34479148 34479147 - ORSgTEMT00500110 151 0.0161 (48/2975) 0 * Os_TE_574871 Os_TE_574871 Chr2 34479146 34479147 + ORSgTEMT00501505 149 0.0168 (50/2978) 0 * Os_TE_574872 Os_TE_574870 Chr2 34478638 34478639 - DEBOAT 110 0.0157 (47/2987) 0 * Os_TE_574869 Os_TE_574869 Chr2 34478631 34478630 + DEBOAT 110 0.0153 (44/2882) 0 * Os_TE_574870 Os_TE_574859 Chr2 34474701 34474548 + ORSgTEMT01701101 133 0.8358 (2454/2936) 1 Intact * Os_TE_574855 Chr2 34474476 34474477 - ORSgTEMT04800063 360 0.0186 (55/2962) 0 * * Os_TE_574851 Chr2 34473686 34473687 - CLOUD 734 0.0391 (117/2995) 0 * Os_TE_574850 Os_TE_574850 Chr2 34473678 34473677 - CLOUD 734 0.0390 (116/2978) 0 * Os_TE_574851 Os_TE_574849 Chr2 34473294 34473293 - ORSgTEMT01601696 238 0.0070 (21/2991) 0 * Os_TE_574848 Os_TE_574848 Chr2 34473291 34473292 + ORSgTEMT01602181 239 0.0074 (22/2988) 0 * Os_TE_574849 Os_TE_574843 Chr2 34471220 34471219 - ORSgTETNOOT01257 225 0.4818 (1415/2937) 0 * * Os_TE_574842 Chr2 34470744 34470743 + F770 284 0.0020 (6/2984) 0 * * Os_TE_574840 Chr2 34468694 34468693 - COPI2_LTR 4733 0.0003 (1/2996) 0 * * Os_TE_574839 Chr2 34468617 34468618 + ORSgTETNOOT00908 242 0.0050 (15/2980) 0 * * Os_TE_574834 Chr2 34463594 34463593 + ORSgTEMT01601934 207 0.7376 (2153/2919) 0 * * Os_TE_574830 Chr2 34461770 34461771 - MERMITE18E 1528 0.7483 (2221/2968) 0 * Os_TE_574829 Os_TE_574829 Chr2 34461766 34461765 + MERMITEB 1610 0.7450 (2194/2945) 0 * Os_TE_574830 Os_TE_574820 Chr2 34457773 34453086 + TESSBIG 4057 0.2787 (755/2709) 1 Intact Os_TE_574818 Os_TE_574818 Chr2 34453086 34457773 - TESSBIG 4057 0.2820 (774/2745) 1 Intact Os_TE_574820 Os_TE_574813 Chr2 34452055 34452054 + ORSgTEMT01601591 242 0.0442 (129/2918) 0 * Os_TE_574812 Os_TE_574812 Chr2 34452052 34452053 + ORSgTEMT01601591 242 0.0490 (143/2918) 0 * Os_TE_574813 Os_TE_574808 Chr2 34450207 34450208 + COPI2_LTR 4733 0.0003 (1/2990) 0 * Os_TE_574807 Os_TE_574807 Chr2 34450203 34450202 - COPI2_LTR 4733 0.0003 (1/2970) 0 * Os_TE_574808 Os_TE_574802 Chr2 34447588 34447589 - RETRO2_LTR 12874 0.0070 (21/2995) 0 * Os_TE_574801 Os_TE_574801 Chr2 34447584 34447583 + RETRO2_LTR 12874 0.0080 (24/2992) 0 * Os_TE_574802 Os_TE_574780 Chr2 34437924 34437316 - JOUZHENA 607 0.2659 (783/2945) 1 Intact Os_TE_574779 Os_TE_574779 Chr2 34437316 34437924 + JOUZHENA 607 0.2772 (827/2983) 1 Intact Os_TE_574780 Os_TE_574759 Chr2 34428334 34428335 + NDNA1TNA_OS 334 0.0010 (3/2994) 0 * Os_TE_574758 Os_TE_574758 Chr2 34428332 34428331 - NDNA1TNA_OS 334 0.0013 (4/2992) 0 * Os_TE_574759 Os_TE_574751 Chr2 34421254 34421253 + ORSgTEMT01601591 242 0.0003 (1/2975) 0 * Os_TE_574750 Os_TE_574750 Chr2 34421251 34421252 + ORSgTEMT01601591 242 0.0003 (1/2974) 0 * Os_TE_574751 Os_TE_574730 Chr2 34417801 34417800 + RETRO1_LTR 8314 0.0178 (53/2972) 0 * * Os_TE_574723 Chr2 34411450 34411451 + STOWAWAY44_OS 240 0.0003 (1/2994) 0 * * Os_TE_574712 Chr2 34403763 34403764 - AMYLTP 383 0.0041 (12/2941) 0 * Os_TE_574711 Os_TE_574711 Chr2 34403755 34403754 + AMYLTP 383 0.0048 (14/2927) 0 * Os_TE_574712 Os_TE_574710 Chr2 34403712 34403713 - RIREX_LTR 8828 0.0003 (1/2963) 0 * Os_TE_574709 Os_TE_574709 Chr2 34403708 34403707 + RIREX_LTR 8828 0.0003 (1/2962) 0 * Os_TE_574710 Os_TE_574691 Chr2 34396772 34396771 - TYPEM 227 0.0017 (5/2973) 0 * * Os_TE_574677 Chr2 34392424 34392425 - COPI2_LTR 4733 0.0037 (11/2976) 0 * Os_TE_574676 Os_TE_574676 Chr2 34392420 34392419 + COPI2_LTR 4733 0.0034 (10/2971) 0 * Os_TE_574677 Os_TE_574669 Chr2 34389516 34389515 + STOWAWAY44_OS 240 0.0003 (1/2986) 0 * Os_TE_574668 Os_TE_574668 Chr2 34389513 34389514 - STOWAWAY44_OS 240 0.0003 (1/2985) 0 * Os_TE_574669 Os_TE_574655 Chr2 34382638 34382639 + MUDRN5_OS 374 0.0571 (171/2994) 0 * Os_TE_574654 Os_TE_574654 Chr2 34382637 34382636 - ORSgTEMT00700002 381 0.0558 (167/2995) 0 * Os_TE_574655 Os_TE_574652 Chr2 34382239 34382238 + TWIFB1 3737 0.0003 (1/2965) 0 * * Os_TE_574650 Chr2 34376199 34376200 - SC-3_LTR 5748 0.0010 (3/2989) 0 * Os_TE_574649 Os_TE_574649 Chr2 34376195 34376194 + ORSiTERTOOT00296 5553 0.0010 (3/2987) 0 * Os_TE_574650 Os_TE_574646 Chr2 34374486 34374487 - SC-3_LTR 5748 0.0003 (1/2984) 0 * * Os_TE_574623 Chr2 34367362 34367361 + STOWAWAY49_OS 241 0.0182 (45/2468) 0 * * Os_TE_574619 Chr2 34366565 34366566 + AMYLTP 383 0.0021 (6/2889) 0 * Os_TE_574618 Os_TE_574618 Chr2 34366557 34366556 - AMYLTP 383 0.0021 (6/2908) 0 * Os_TE_574619 Os_TE_574600 Chr2 34357776 34357777 + TWIF 586 0.0003 (1/2976) 0 * Os_TE_574599 Os_TE_574599 Chr2 34357769 34357768 - ORSiTETNOOT00134 607 0.0003 (1/2977) 0 * Os_TE_574600 Os_TE_574557 Chr2 34332833 34332834 - SC-7_LTR 4431 0.0007 (2/2992) 0 * Os_TE_574556 Os_TE_574556 Chr2 34332829 34332828 + SC-7_LTR 4431 0.0007 (2/2990) 0 * Os_TE_574557 Os_TE_574534 Chr2 34322574 34311568 - RETRO2_LTR 12874 0.2871 (860/2995) 1 Intact * Os_TE_574519 Chr2 34310422 34310423 + COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_574518 Os_TE_574518 Chr2 34310418 34310417 - COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_574519 Os_TE_574517 Chr2 34309831 34309832 + COPI2_LTR 4733 0.0033 (10/2994) 0 * Os_TE_574516 Os_TE_574516 Chr2 34309827 34309826 - COPI2_LTR 4733 0.0033 (10/2991) 0 * Os_TE_574517 Os_TE_574500 Chr2 34304061 34304062 + SC-8_LTR 4951 0.0003 (1/2950) 0 * Os_TE_574499 Os_TE_574499 Chr2 34304057 34304056 - SC-8_LTR 4951 0.0003 (1/2958) 0 * Os_TE_574500 Os_TE_574490 Chr2 34293433 34293434 - ORSgTEMT00500704 148 0.0003 (1/2883) 0 * * Os_TE_574425 Chr2 34275712 34275711 + COPIA2-LTR_OS 6433 0.0010 (3/2945) 0 * * Os_TE_574404 Chr2 34265991 34265992 + ORSgTETNOOT00032 218 0.0010 (3/2990) 0 * * Os_TE_574365 Chr2 34248730 34248729 + Cassandra_OS-LTR 764 0.0013 (4/2984) 0 * * Os_TE_574362 Chr2 34244351 34244352 - SC-3_LTR 5748 0.0003 (1/2991) 0 * * Os_TE_574332 Chr2 34231608 34231607 - HARB-1_OS 5166 0.0004 (1/2673) 0 * * Os_TE_574331 Chr2 34230108 34230109 - INDITTO 263 0.0003 (1/2960) 0 * Os_TE_574330 Os_TE_574330 Chr2 34230106 34230105 + ORSgTETNOOT02316 263 0.0003 (1/2961) 0 * Os_TE_574331 Os_TE_574295 Chr2 34215711 34215710 + ORSgTEMT00700003 350 0.0003 (1/2993) 0 * * Os_TE_574247 Chr2 34198077 34198078 - COPI2_LTR 4733 0.0011 (3/2857) 0 * Os_TE_574246 Os_TE_574246 Chr2 34198073 34198072 + COPI2_LTR 4733 0.0010 (3/2885) 0 * Os_TE_574247 Os_TE_574242 Chr2 34197714 34197715 + CRATA 4786 0.0014 (4/2829) 0 * Os_TE_574241 Os_TE_574241 Chr2 34197706 34197705 - CRATA 4786 0.0018 (5/2818) 0 * Os_TE_574242 Os_TE_574230 Chr2 34193758 34193759 - DS-RICE4N 715 0.0457 (136/2978) 0 * Os_TE_574229 Os_TE_574229 Chr2 34193751 34193750 - JOUZHENA 607 0.0433 (129/2976) 0 * Os_TE_574230 Os_TE_574221 Chr2 34189227 34188734 - MuDR4_OS 7610 0.5452 (1609/2951) 1 Intact Os_TE_574220 Os_TE_574220 Chr2 34188733 34189227 - MuDR4_OS 7610 0.5471 (1619/2959) 1 Intact Os_TE_574221 Os_TE_574208 Chr2 34182033 34181427 - ORSiTETNOOT00134 607 0.2926 (832/2843) 1 Intact Os_TE_574207 Os_TE_574207 Chr2 34181427 34182033 - ORSiTETNOOT00189 607 0.0248 (48/1933) -1 Intact Os_TE_574208 Os_TE_574204 Chr2 34177650 34181375 + TWIFB1 3737 0.7936 (1042/1313) 1 Intact * Os_TE_574202 Chr2 34176103 34176102 + TRUNCATOR 2918 0.0124 (37/2994) 0 * Os_TE_574201 Os_TE_574201 Chr2 34176102 34176103 - TRUNCATOR 2918 0.0127 (38/2991) 0 * Os_TE_574202 Os_TE_574199 Chr2 34174198 34174197 + ORSgTETNOOT00908 242 0.0003 (1/2911) 0 * * Os_TE_574195 Chr2 34164083 34164084 - RIREX_LTR 8828 0.0030 (9/2977) 0 * Os_TE_574194 Os_TE_574194 Chr2 34164079 34164078 + RIREX_LTR 8828 0.0027 (8/2971) 0 * Os_TE_574195 Os_TE_574170 Chr2 34075630 34075631 + ORSgTEMT00600376 329 0.0017 (5/2996) 0 * Os_TE_574169 Os_TE_574169 Chr2 34075625 34075624 + ORSgTEMT00600272 361 0.0017 (5/2995) 0 * Os_TE_574170 Os_TE_574153 Chr2 34063879 34063878 - ORSiTERTOOT00074 4935 0.0004 (1/2522) 0 * * Os_TE_574143 Chr2 34062444 34062445 - DS-RICE4N 715 0.0021 (5/2437) 0 * * Os_TE_574142 Chr2 34062149 34062150 + ORSgTEMT01601036 240 0.0624 (185/2963) 0 * * Os_TE_574139 Chr2 34061733 34061734 + SZ-9LTR 965 0.3750 (1121/2989) 0 * Os_TE_574138 Os_TE_574138 Chr2 34061729 34061728 - SZ-9LTR 965 0.3789 (1133/2990) 0 * Os_TE_574139 Os_TE_574134 Chr2 34060776 34060777 - COPIA2-LTR_OS 6433 0.0004 (1/2822) 0 * * Os_TE_574121 Chr2 34057414 34057413 - ORSgTETNOOT01930 140 0.0524 (155/2957) 0 * * Os_TE_574120 Chr2 34057308 34057309 - ORSgTEMT01602082 215 0.0610 (181/2968) 0 * * Os_TE_574116 Chr2 34055102 34055103 - STOWAWAY18_OS 216 0.0017 (5/2978) 0 * * Os_TE_574115 Chr2 34054886 34054885 + ORSgTETNOOT00686 140 0.0648 (193/2979) 0 * * Os_TE_574105 Chr2 34054225 34054226 - ORSgTEMT00500102 149 0.0656 (194/2959) 0 * * Os_TE_574103 Chr2 34053691 34053692 - RIRE2_LTR 11306 0.0044 (13/2927) 0 * Os_TE_574102 Os_TE_574102 Chr2 34053687 34053686 - ORSgTERT00201216 11284 0.0051 (15/2926) 0 * Os_TE_574103 Os_TE_574089 Chr2 34048929 34048930 + SZ-55_LTR 10318 0.0003 (1/2993) 0 * Os_TE_574088 Os_TE_574088 Chr2 34048925 34048924 - SZ-55_LTR 10318 0.0003 (1/2994) 0 * Os_TE_574089 Os_TE_574084 Chr2 34047857 34047858 + SZ-55_LTR 10318 0.0003 (1/2995) 0 * * Os_TE_574069 Chr2 34038253 34038254 - SZ-55_LTR 10318 0.0007 (2/2997) 0 * Os_TE_574068 Os_TE_574068 Chr2 34038249 34038248 + SZ-55_LTR 10318 0.0007 (2/2997) 0 * Os_TE_574069 Os_TE_574064 Chr2 34034830 34034829 + ORSgTEMT02400034 225 0.5754 (1720/2989) 0 * * Os_TE_574059 Chr2 34030379 34030378 + STOWAWAY44_OS 240 0.0007 (2/2997) 0 * Os_TE_574058 Os_TE_574058 Chr2 34030376 34030377 - STOWAWAY44_OS 240 0.0007 (2/2998) 0 * Os_TE_574059 Os_TE_574050 Chr2 34023516 34023517 + COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * Os_TE_574049 Os_TE_574049 Chr2 34023512 34023511 - COPIA2-LTR_OS 6433 0.0003 (1/2979) 0 * Os_TE_574050 Os_TE_574046 Chr2 34023238 34023237 + ORSgTETNOOT00221 261 0.0168 (50/2984) 0 * * Os_TE_574037 Chr2 34023004 34023005 + INDITTO 263 0.0017 (5/2952) 0 * * Os_TE_574028 Chr2 34021781 34021782 + RETRO2_LTR 12874 0.6373 (1810/2840) 0 * * Os_TE_574014 Chr2 34019361 34019362 - COPIA1-LTR_OS 9292 0.0003 (1/2979) 0 * * Os_TE_574013 Chr2 34018860 34018861 - STOWAWAY18_OS 216 0.0017 (5/2975) 0 * * Os_TE_574012 Chr2 34018847 34018848 + ORSiTERTOOT00402 2660 0.0003 (1/2980) 0 * Os_TE_574011 Os_TE_574011 Chr2 34018843 34018842 - ORSiTERTOOT00402 2660 0.0003 (1/2982) 0 * Os_TE_574012 Os_TE_574006 Chr2 34016562 34016561 - STOWAWAY51_OS 246 0.0007 (2/2996) 0 * Os_TE_574005 Os_TE_574005 Chr2 34016556 34016557 + STOWAWAY51_OS 246 0.0010 (3/2995) 0 * Os_TE_574006 Os_TE_573986 Chr2 34004405 34004404 + SC-8_LTR 4951 0.0017 (5/2985) 0 * * Os_TE_573976 Chr2 33998069 33998068 + OSTE15 1168 0.0749 (224/2989) 0 * * Os_TE_573965 Chr2 33988785 33988786 + COPIA2-LTR_OS 6433 0.0003 (1/2931) 0 * Os_TE_573964 Os_TE_573964 Chr2 33988781 33988780 - COPIA2-LTR_OS 6433 0.0003 (1/2946) 0 * Os_TE_573965 Os_TE_573933 Chr2 33973978 33973979 + SC-8_LTR 4951 0.0007 (2/2995) 0 * Os_TE_573932 Os_TE_573932 Chr2 33973974 33973973 - SC-8_LTR 4951 0.0007 (2/2997) 0 * Os_TE_573933 Os_TE_573928 Chr2 33970755 33970754 + CLOUD-4 520 0.0017 (5/2902) 0 * * Os_TE_573915 Chr2 33964477 33964478 - SZ-40LTR 2465 0.0003 (1/2996) 0 * Os_TE_573914 Os_TE_573914 Chr2 33964473 33964472 + SZ-40LTR 2465 0.0003 (1/2988) 0 * Os_TE_573915 Os_TE_573897 Chr2 33960884 33960883 + ORSgTEMT00700017 386 0.0003 (1/2977) 0 * * Os_TE_573896 Chr2 33960877 33960878 - ORSgTEMT00700002 381 0.0003 (1/2984) 0 * Os_TE_573895 Os_TE_573895 Chr2 33960876 33960875 + MUDRN5_OS 374 0.0003 (1/2978) 0 * Os_TE_573896 Os_TE_573881 Chr2 33952117 33946917 - OSR3_LTR 5201 0.3127 (936/2993) 1 Intact Os_TE_573878 Os_TE_573878 Chr2 33946917 33952117 + OSR3_LTR 5201 0.3065 (910/2969) 1 Intact Os_TE_573881 Os_TE_573875 Chr2 33943465 33943466 + SC-8_LTR 4951 0.0719 (215/2992) 0 * Os_TE_573874 Os_TE_573874 Chr2 33943461 33943460 - SC-8_LTR 4951 0.0722 (216/2991) 0 * Os_TE_573875 Os_TE_573841 Chr2 33924932 33924933 - COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_573840 Os_TE_573840 Chr2 33924928 33924927 + COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_573841 Os_TE_573839 Chr2 33923979 33923980 + RIREX_LTR 8828 0.0013 (4/2998) 0 * Os_TE_573838 Os_TE_573838 Chr2 33923975 33923974 - RIREX_LTR 8828 0.0017 (5/2998) 0 * Os_TE_573839 Os_TE_573836 Chr2 33923234 33923060 - ORSgTEMT06000292 191 0.5752 (952/1655) 1 Intact * Os_TE_573812 Chr2 33917158 33916009 + Cassandra_OS-LTR 764 0.3213 (956/2975) 1 Intact * Os_TE_573749 Chr2 33884297 33884298 + NDNA2TNA_OS 346 0.0023 (7/2988) 0 * Os_TE_573748 Os_TE_573748 Chr2 33884295 33884294 - NDNA2TNA_OS 346 0.0023 (7/2990) 0 * Os_TE_573749 Os_TE_573712 Chr2 33873876 33873875 + RIREX_LTR 8828 0.0003 (1/2978) 0 * * Os_TE_573688 Chr2 33868928 33868929 + OSTONOR1_LTR 6440 0.6010 (1738/2892) 0 * * Os_TE_573684 Chr2 33867994 33867993 + ORSgTEMT01601122 212 0.6179 (1706/2761) 0 * * Os_TE_573681 Chr2 33867604 33867603 + ORSgTETNOOT00908 242 0.0003 (1/2921) 0 * * Os_TE_573672 Chr2 33865168 33865167 + ORSgTETNOOT00032 218 0.0028 (8/2810) 0 * * Os_TE_573663 Chr2 33860568 33860569 + COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_573662 Os_TE_573662 Chr2 33860564 33860563 - COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_573663 Os_TE_573646 Chr2 33849284 33849285 - MPING 430 0.0003 (1/2988) 0 * Os_TE_573645 Os_TE_573645 Chr2 33849282 33849281 + MPING 430 0.0003 (1/2981) 0 * Os_TE_573646 Os_TE_573640 Chr2 33847891 33847892 - ORSiTERTOOT00367 5639 0.0003 (1/2880) 0 * * Os_TE_573628 Chr2 33836877 33836876 + ORSiTERTOOT00036 328 0.0003 (1/2997) 0 * * Os_TE_573626 Chr2 33835885 33835886 - INDITTO 263 0.0030 (9/2998) 0 * * Os_TE_573624 Chr2 33835839 33835840 - INDITTO 263 0.0017 (5/2996) 0 * Os_TE_573623 Os_TE_573623 Chr2 33835837 33835836 + INDITTO 263 0.0017 (5/2999) 0 * Os_TE_573624 Os_TE_573622 Chr2 33835531 33835530 - STOWAWAY44_OS 240 0.0003 (1/2999) 0 * Os_TE_573621 Os_TE_573621 Chr2 33835528 33835529 + STOWAWAY44_OS 240 0.0003 (1/2998) 0 * Os_TE_573622 Os_TE_573620 Chr2 33835422 33835421 + STOWAWAY51_OS 246 0.0010 (3/2996) 0 * Os_TE_573619 Os_TE_573619 Chr2 33835416 33835417 + ORSgTEMT01601591 242 0.0010 (3/2998) 0 * Os_TE_573620 Os_TE_573618 Chr2 33835380 33835379 - STOWAWAY51_OS 246 0.0003 (1/2996) 0 * * Os_TE_573582 Chr2 33829835 33829834 - CLOUD 734 0.0579 (166/2868) 0 * * Os_TE_573569 Chr2 33819072 33819073 - RETRO2_LTR 12874 0.6694 (1986/2967) 0 * Os_TE_573568 Os_TE_573568 Chr2 33819068 33819067 + RETRO2_LTR 12874 0.6687 (1980/2961) 0 * Os_TE_573569 Os_TE_573552 Chr2 33804994 33804995 + MUDRN5_OS 374 0.0003 (1/2977) 0 * * Os_TE_573551 Chr2 33804876 33804877 + INDITTO 263 0.0030 (9/2986) 0 * Os_TE_573550 Os_TE_573550 Chr2 33804874 33804873 - INDITTO 263 0.0030 (9/2988) 0 * Os_TE_573551 Os_TE_573542 Chr2 33800036 33800037 - SC-8_LTR 4951 0.0114 (34/2994) 0 * Os_TE_573541 Os_TE_573541 Chr2 33800032 33800031 + SC-8_LTR 4951 0.0120 (36/2991) 0 * Os_TE_573542 Os_TE_573538 Chr2 33795276 33795277 + STOWAWAY51_OS 246 0.0140 (41/2924) 0 * * Os_TE_573533 Chr2 33789604 33789605 - SC-3_LTR 5748 0.0003 (1/2985) 0 * * Os_TE_573506 Chr2 33772342 33772343 + ORSgTETNOOT02309 137 0.0017 (5/2994) 0 * Os_TE_573505 Os_TE_573505 Chr2 33772337 33772336 - ORSgTETNOOT00553 140 0.0017 (5/2991) 0 * Os_TE_573506 Os_TE_573489 Chr2 33765301 33765300 - STOWAWAY51_OS 246 0.0020 (6/2994) 0 * * Os_TE_573463 Chr2 33745910 33745911 + ORSiTERTOOT00402 2660 0.0047 (14/2984) 0 * Os_TE_573462 Os_TE_573462 Chr2 33745906 33745905 - ORSiTERTOOT00402 2660 0.0047 (14/2992) 0 * Os_TE_573463 Os_TE_573454 Chr2 33743770 33743769 + MPING 430 0.0003 (1/2977) 0 * * Os_TE_573453 Chr2 33743627 33743628 + MPING 430 0.0003 (1/2972) 0 * Os_TE_573452 Os_TE_573452 Chr2 33743625 33743624 - MPING 430 0.0007 (2/2974) 0 * Os_TE_573453 Os_TE_573434 Chr2 33735621 33735622 + COPIA2-LTR_OS 6433 0.0047 (14/2998) 0 * Os_TE_573433 Os_TE_573433 Chr2 33735617 33735616 - COPIA2-LTR_OS 6433 0.0047 (14/2996) 0 * Os_TE_573434 Os_TE_573418 Chr2 33725623 33725624 - SZ-22_LTR 4403 0.0004 (1/2367) -1 * Os_TE_573417 Os_TE_573417 Chr2 33725619 33725618 + ORSiTERTOOT00226 792 0.0004 (1/2429) 0 * Os_TE_573418 Os_TE_573412 Chr2 33724740 33724741 - TRUNCATOR 2918 0.0012 (3/2592) 0 * * Os_TE_573411 Chr2 33724248 33724247 + OSR3_LTR 5201 0.0017 (5/2985) 0 * * Os_TE_573409 Chr2 33723861 33723862 - ORSiTERTOOT00402 2660 0.0037 (11/2994) 0 * * Os_TE_573394 Chr2 33714600 33714601 - SC-8_LTR 4951 0.0013 (4/2968) 0 * Os_TE_573393 Os_TE_573393 Chr2 33714596 33714595 + SC-8_LTR 4951 0.0014 (4/2962) 0 * Os_TE_573394 Os_TE_573391 Chr2 33711279 33711280 - SC-7_LTR 4431 0.3457 (1035/2994) 0 * Os_TE_573390 Os_TE_573390 Chr2 33711275 33711274 + OSR3_LTR 5201 0.3418 (1023/2993) 0 * Os_TE_573391 Os_TE_573387 Chr2 33709951 33709950 - STOWAWAY51_OS 246 0.0003 (1/2969) 0 * * Os_TE_573382 Chr2 33701719 33701718 - SC-8_LTR 4951 0.0047 (14/2990) 0 * * Os_TE_573337 Chr2 33683449 33683450 - ORSiTETNOOT00134 607 0.0582 (173/2973) 0 * Os_TE_573336 Os_TE_573336 Chr2 33683442 33683441 + TWIF 586 0.0334 (95/2844) 0 * Os_TE_573337 Os_TE_573330 Chr2 33678560 33678559 - RIREX_LTR 8828 0.0014 (4/2940) 0 * * Os_TE_573329 Chr2 33678466 33678465 + OSTE33 1012 0.1344 (400/2976) 0 * Os_TE_573328 Os_TE_573328 Chr2 33678455 33678456 + OSTE33 1012 0.1394 (417/2991) 0 * Os_TE_573329 Os_TE_573326 Chr2 33678157 33678158 + MPING 430 0.0023 (7/2979) 0 * Os_TE_573325 Os_TE_573325 Chr2 33678155 33678154 - MPING 430 0.0023 (7/2983) 0 * Os_TE_573326 Os_TE_573314 Chr2 33676307 33676308 - TYPEM 227 0.0522 (156/2986) 0 * Os_TE_573313 Os_TE_573313 Chr2 33676306 33676305 - ORSgTEMT02400179 221 0.0515 (154/2989) 0 * Os_TE_573314 Os_TE_573275 Chr2 33669261 33669260 - ORSgTERT00201216 11284 0.1451 (434/2992) 0 * * Os_TE_573249 Chr2 33658317 33658318 - ORSiTEMT01300001 950 0.0009 (1/1172) 0 * * Os_TE_573216 Chr2 33647658 33647659 + COPI2_LTR 4733 0.0007 (2/2988) 0 * Os_TE_573215 Os_TE_573215 Chr2 33647654 33647653 - COPI2_LTR 4733 0.0007 (2/2986) 0 * Os_TE_573216 Os_TE_573211 Chr2 33645723 33645724 - COPI2_LTR 4733 0.0003 (1/2954) 0 * Os_TE_573210 Os_TE_573210 Chr2 33645719 33645718 + COPI2_LTR 4733 0.0007 (2/2959) 0 * Os_TE_573211 Os_TE_573165 Chr2 33631689 33631690 + SC-8_LTR 4951 0.0003 (1/2978) 0 * Os_TE_573164 Os_TE_573164 Chr2 33631685 33631684 - SC-8_LTR 4951 0.0003 (1/2980) 0 * Os_TE_573165 Os_TE_573155 Chr2 33621402 33621401 + ORSgTEMT00700017 386 0.0003 (1/2998) 0 * * Os_TE_573152 Chr2 33618336 33618337 - ORSiTETNOOT00134 607 0.0032 (3/929) 0 * * Os_TE_573143 Chr2 33616996 33616997 - ORSgTEMT03000049 380 0.0098 (10/1021) 0 * * Os_TE_573140 Chr2 33615315 33615316 + COPI2_LTR 4733 0.0003 (1/2987) 0 * Os_TE_573139 Os_TE_573139 Chr2 33615311 33615310 - COPI2_LTR 4733 0.0007 (2/2987) 0 * Os_TE_573140 Os_TE_573112 Chr2 33606280 33606279 - ORSgTEMT02400179 221 0.2687 (802/2985) 0 * * Os_TE_573041 Chr2 33579137 33579138 + COPI2_LTR 4733 0.0003 (1/2992) 0 * Os_TE_573040 Os_TE_573040 Chr2 33579133 33579132 - COPI2_LTR 4733 0.0003 (1/2992) 0 * Os_TE_573041 Os_TE_573020 Chr2 33564716 33564717 - INDITTO 263 0.0010 (3/2983) 0 * * Os_TE_573008 Chr2 33561359 33561360 - INDITTO 263 0.2999 (458/1527) 0 * Os_TE_573007 Os_TE_573007 Chr2 33561357 33561356 - ORSgTETNOOT00053 263 0.2417 (718/2971) 0 * Os_TE_573008 Os_TE_572988 Chr2 33550676 33550418 + ORSgTEMT06100023 259 0.3316 (994/2998) 1 Intact Os_TE_572985 Os_TE_572985 Chr2 33550418 33550676 + ORSgTEMT06100010 269 0.3302 (989/2995) 1 Intact Os_TE_572988 Os_TE_572982 Chr2 33549338 33549339 - SC-8_LTR 4951 0.0007 (2/2996) 0 * Os_TE_572981 Os_TE_572981 Chr2 33549337 33549336 + SC-8_LTR 4951 0.0007 (2/2997) 0 * Os_TE_572982 Os_TE_572975 Chr2 33546034 33545788 + STOWAWAY51_OS 246 0.5190 (1503/2896) 1 Intact Os_TE_572973 Os_TE_572973 Chr2 33545785 33546031 + STOWAWAY51_OS 246 0.5212 (1515/2907) 1 Intact Os_TE_572975 Os_TE_572917 Chr2 33510285 33510286 - ORSgTETN00200001 10994 0.0003 (1/2996) 0 * Os_TE_572916 Os_TE_572916 Chr2 33510283 33510282 + SPMLIKE 10989 0.0003 (1/2993) 0 * Os_TE_572917 Os_TE_572909 Chr2 33506223 33506224 + ORSiTERTOOT00332 5395 0.0014 (4/2842) 0 * Os_TE_572908 Os_TE_572908 Chr2 33506219 33506218 - ORSiTERTOOT00332 5395 0.0014 (4/2827) 0 * Os_TE_572909 Os_TE_572906 Chr2 33503700 33503701 + COPI2_LTR 4733 0.0003 (1/2937) 0 * * Os_TE_572902 Chr2 33499640 33499639 + ORSgTEMT00100428 339 0.0013 (4/2994) 0 * Os_TE_572901 Os_TE_572901 Chr2 33499639 33499640 + NDNA1TNA_OS 334 0.0013 (4/2993) 0 * Os_TE_572902 Os_TE_572874 Chr2 33487077 33487078 - HARB-1_OS 5166 0.0003 (1/2985) 0 * Os_TE_572873 Os_TE_572873 Chr2 33487075 33487074 + HARB-1_OS 5166 0.0003 (1/2985) 0 * Os_TE_572874 Os_TE_572837 Chr2 33470477 33470237 - ORSgTEMT01601493 303 0.3513 (1050/2989) 1 Intact Os_TE_572836 Os_TE_572836 Chr2 33470237 33470477 - ORSgTEMT01601696 238 0.3503 (1044/2980) 1 Intact Os_TE_572837 Os_TE_572835 Chr2 33469938 33469937 - STOWAWAY44_OS 240 0.0007 (2/2994) 0 * Os_TE_572834 Os_TE_572834 Chr2 33469935 33469936 + STOWAWAY44_OS 240 0.0007 (2/2994) 0 * Os_TE_572835 Os_TE_572832 Chr2 33468118 33468117 - INDITTO 263 0.0007 (2/2984) 0 * * Os_TE_572799 Chr2 33462602 33462603 + TELIA 141 0.0007 (2/2930) 0 * Os_TE_572798 Os_TE_572798 Chr2 33462594 33462593 - TELIA 141 0.0010 (3/2945) 0 * Os_TE_572799 Os_TE_572776 Chr2 33453120 33453121 - NDNA1TNA_OS 334 0.0007 (2/2991) 0 * Os_TE_572775 Os_TE_572775 Chr2 33453119 33453118 + NDNA1TNA_OS 334 0.0007 (2/2989) 0 * Os_TE_572776 Os_TE_572759 Chr2 33449647 33449648 + ORSgTEMT00500610 153 0.6510 (1949/2994) 0 * * Os_TE_572749 Chr2 33448052 33448053 - JOUZHENA 607 0.0007 (2/2973) 0 * * Os_TE_572730 Chr2 33441102 33441101 - FOCUS 257 0.0003 (1/2993) 0 * * Os_TE_572723 Chr2 33440415 33440416 - COPI2_LTR 4733 0.0014 (4/2919) 0 * Os_TE_572722 Os_TE_572722 Chr2 33440411 33440410 + COPI2_LTR 4733 0.0014 (4/2915) 0 * Os_TE_572723 Os_TE_572697 Chr2 33435389 33435388 + STOWAWAY51_OS 246 0.0007 (2/2883) 0 * * Os_TE_572695 Chr2 33434922 33434923 + ORSiTERTOOT00332 5395 0.0003 (1/2995) 0 * Os_TE_572694 Os_TE_572694 Chr2 33434918 33434917 - ORSiTERTOOT00332 5395 0.0003 (1/2996) 0 * Os_TE_572695 Os_TE_572685 Chr2 33428715 33428714 - F569 228 0.0003 (1/2879) 0 * * Os_TE_572680 Chr2 33425086 33425087 + ORSgTETNOOT01998 254 0.0804 (241/2997) 0 * Os_TE_572679 Os_TE_572679 Chr2 33425084 33425083 + ORSgTETNOOT01834 251 0.0794 (238/2996) 0 * Os_TE_572680 Os_TE_572662 Chr2 33421396 33421397 - TRUNCATOR2_LTR 2904 0.0711 (211/2966) 0 * Os_TE_572661 Os_TE_572661 Chr2 33421392 33421391 + TRUNCATOR2_LTR 2904 0.0687 (204/2969) 0 * Os_TE_572662 Os_TE_572660 Chr2 33418981 33418982 - TRUNCATOR2_LTR 2904 0.0003 (1/2996) 0 * * Os_TE_572657 Chr2 33418704 33418703 + ORSiTERTOOT00028 8600 0.0007 (1/1514) 0 * * Os_TE_572633 Chr2 33410518 33410519 - COPIA2-LTR_OS 6433 0.0003 (1/2952) 0 * Os_TE_572632 Os_TE_572632 Chr2 33410514 33410513 + COPIA2-LTR_OS 6433 0.0003 (1/2964) 0 * Os_TE_572633 Os_TE_572629 Chr2 33409159 33409158 + ORSgTEMT00901844 250 0.0017 (5/2998) 0 * * Os_TE_572599 Chr2 33401780 33401781 + INDITTO 263 0.0020 (6/2985) 0 * Os_TE_572598 Os_TE_572598 Chr2 33401778 33401777 - INDITTO 263 0.0017 (5/2986) 0 * Os_TE_572599 Os_TE_572594 Chr2 33397251 33397250 + ORSgTEMT01601591 242 0.0003 (1/2991) 0 * * Os_TE_572577 Chr2 33386562 33386563 + RIREX_LTR 8828 0.0186 (49/2635) 0 * Os_TE_572576 Os_TE_572576 Chr2 33386558 33386557 - RIREX_LTR 8828 0.0196 (45/2301) 0 * Os_TE_572577 Os_TE_572569 Chr2 33383266 33383267 - SZ-22_LTR 4403 0.0003 (1/2986) 0 * Os_TE_572568 Os_TE_572568 Chr2 33383262 33383261 + ORSiTERTOOT00226 792 0.0003 (1/2988) 0 * Os_TE_572569 Os_TE_572521 Chr2 33348057 33348056 - COPI2_LTR 4733 0.0007 (2/2948) 0 * * Os_TE_572517 Chr2 33345875 33345876 + RIREX_LTR 8828 0.0003 (1/2936) 0 * Os_TE_572516 Os_TE_572516 Chr2 33345871 33345870 - RIREX_LTR 8828 0.0003 (1/2934) 0 * Os_TE_572517 Os_TE_572515 Chr2 33344838 33344839 + SPMLIKE 10989 0.0007 (2/2847) 0 * * Os_TE_572514 Chr2 33344805 33333409 + CACTA-B 1103 0.3281 (967/2947) 1 Intact Os_TE_572511 Os_TE_572511 Chr2 33333409 33344803 - ORSgTETN00200001 10994 0.3168 (920/2904) 1 Intact Os_TE_572514 Os_TE_572510 Chr2 33333283 33333282 + CACTA-H 1152 0.0783 (224/2861) 0 * * Os_TE_572495 Chr2 33329710 33329711 - SZ-35LTR 3853 0.2072 (579/2795) 0 * * Os_TE_572483 Chr2 33326410 33326411 - RIREX_LTR 8828 0.0044 (13/2976) 0 * Os_TE_572482 Os_TE_572482 Chr2 33326406 33326405 + RIREX_LTR 8828 0.0040 (12/2974) 0 * Os_TE_572483 Os_TE_572467 Chr2 33318320 33318321 - SC-3_LTR 5748 0.0017 (5/2990) 0 * Os_TE_572466 Os_TE_572466 Chr2 33318316 33318315 + ORSiTERTOOT00296 5553 0.0017 (5/2990) 0 * Os_TE_572467 Os_TE_572461 Chr2 33313681 33313682 + RIREX_LTR 8828 0.0003 (1/2993) 0 * Os_TE_572460 Os_TE_572460 Chr2 33313677 33313676 - RIREX_LTR 8828 0.0003 (1/2993) 0 * Os_TE_572461 Os_TE_572455 Chr2 33310930 33310931 - COPI2_LTR 4733 0.0007 (2/2977) 0 * Os_TE_572454 Os_TE_572454 Chr2 33310926 33310925 + COPI2_LTR 4733 0.0010 (3/2982) 0 * Os_TE_572455 Os_TE_572422 Chr2 33297617 33297616 + STOWAWAY51_OS 246 0.0003 (1/2996) 0 * Os_TE_572421 Os_TE_572421 Chr2 33297611 33297612 - STOWAWAY51_OS 246 0.0003 (1/2996) 0 * Os_TE_572422 Os_TE_572418 Chr2 33296969 33296968 + SZ-9LTR 965 0.0811 (243/2997) 0 * * Os_TE_572371 Chr2 33267918 33266730 - CACTA-H 1152 0.3313 (986/2976) 1 Intact Os_TE_572370 Os_TE_572370 Chr2 33266727 33267918 + CACTA-B 1103 0.3380 (983/2908) 1 Intact Os_TE_572371 Os_TE_572368 Chr2 33265033 33265034 - SC-3_LTR 5748 0.0003 (1/2989) 0 * * Os_TE_572364 Chr2 33259859 33259860 + ORSiTERTOOT00296 5553 0.0010 (3/2993) 0 * Os_TE_572363 Os_TE_572363 Chr2 33259855 33259854 - SC-3_LTR 5748 0.0011 (3/2790) 0 * Os_TE_572364 Os_TE_572359 Chr2 33256048 33256049 + ORSiTERTOOT00296 5553 0.0003 (1/2993) 0 * Os_TE_572358 Os_TE_572358 Chr2 33256044 33256043 - SC-3_LTR 5748 0.0003 (1/2995) 0 * Os_TE_572359 Os_TE_572236 Chr2 33206215 33206214 + F770 284 0.0970 (267/2752) 0 * * Os_TE_572191 Chr2 33188085 33188086 + ORSgTETNOOT01286 235 0.0007 (2/2984) 0 * * Os_TE_572190 Chr2 33187920 33187921 + INDITTO 263 0.0061 (18/2971) 0 * * Os_TE_572185 Chr2 33187286 33187287 - RETROSAT2LTRA 3112 0.0017 (5/2990) 0 * Os_TE_572184 Os_TE_572184 Chr2 33187282 33187281 + RETROSAT2LTRA 3112 0.0017 (5/2983) 0 * Os_TE_572185 Os_TE_572171 Chr2 33183946 33183945 + ORSgTEMT01601591 242 0.0304 (91/2991) 0 * Os_TE_572170 Os_TE_572170 Chr2 33183940 33183941 + STOWAWAY51_OS 246 0.0311 (93/2988) 0 * Os_TE_572171 Os_TE_572168 Chr2 33183776 33183777 + NDNA1TNA_OS 334 0.0010 (3/2985) 0 * Os_TE_572167 Os_TE_572167 Chr2 33183774 33183773 - NDNA1TNA_OS 334 0.0007 (2/2995) 0 * Os_TE_572168 Os_TE_572165 Chr2 33182654 33182655 + STOWAWAY51_OS 246 0.0051 (15/2961) 0 * * Os_TE_572135 Chr2 33173575 33173576 + ORSiTERTOOT00296 5553 0.0003 (1/2997) 0 * Os_TE_572134 Os_TE_572134 Chr2 33173571 33173570 - SC-3_LTR 5748 0.0003 (1/2999) 0 * Os_TE_572135 Os_TE_572045 Chr2 33125866 33125867 - SC-8_LTR 4951 0.0010 (3/2980) 0 * Os_TE_572044 Os_TE_572044 Chr2 33125862 33125861 + SC-8_LTR 4951 0.0010 (3/2981) 0 * Os_TE_572045 Os_TE_572017 Chr2 33111929 33111930 - MuDR3_OS 8604 0.6769 (1988/2937) 0 * * Os_TE_571982 Chr2 33098813 33098814 - SC-3_LTR 5748 0.0080 (24/2994) 0 * Os_TE_571981 Os_TE_571981 Chr2 33098809 33098808 + ORSiTERTOOT00296 5553 0.0080 (24/2991) 0 * Os_TE_571982 Os_TE_571967 Chr2 33089843 33089844 + EXPLORER 210 0.0014 (4/2945) 0 * * Os_TE_571950 Chr2 33078199 33078200 + TWIF 586 0.0003 (1/2986) 0 * Os_TE_571949 Os_TE_571949 Chr2 33078192 33078191 - ORSiTETNOOT00134 607 0.0003 (1/2985) 0 * Os_TE_571950 Os_TE_571942 Chr2 33076205 33076206 + ORSgTERT00200703 412 0.0007 (2/2990) 0 * * Os_TE_571934 Chr2 33069982 33069983 - SC-3_LTR 5748 0.3177 (951/2993) 0 * Os_TE_571933 Os_TE_571933 Chr2 33069978 33069977 + ORSiTERTOOT00296 5553 0.3175 (950/2992) 0 * Os_TE_571934 Os_TE_571914 Chr2 33052765 33052766 + COPI2_LTR 4733 0.0003 (1/2996) 0 * * Os_TE_571912 Chr2 33052050 33052049 - STOWAWAY51_OS 246 0.0003 (1/2995) 0 * Os_TE_571911 Os_TE_571911 Chr2 33052047 33052048 - STOWAWAY51_OS 246 0.0003 (1/2994) 0 * Os_TE_571912 Os_TE_571904 Chr2 33045302 33045301 - TRUNCATOR 2918 0.0210 (63/2995) 0 * Os_TE_571903 Os_TE_571903 Chr2 33045301 33045302 + TRUNCATOR 2918 0.0207 (62/2995) 0 * Os_TE_571904 Os_TE_571874 Chr2 33034853 33034854 - RIREX_LTR 8828 0.0003 (1/2990) 0 * * Os_TE_571823 Chr2 33024931 33015389 + SPMLIKE 10989 0.2872 (822/2862) 1 Intact Os_TE_571819 Os_TE_571819 Chr2 33015388 33024932 - ORSgTETN00200001 10994 0.3020 (878/2907) 1 Intact Os_TE_571823 Os_TE_571815 Chr2 33013712 33010646 - RETROSAT2LTRA 3112 0.3094 (926/2993) 1 Intact Os_TE_571813 Os_TE_571813 Chr2 33010646 33013712 + RETROSAT2LTRA 3112 0.3094 (926/2993) 1 Intact Os_TE_571815 Os_TE_571811 Chr2 33010381 33010380 + RETROSAT2LTR 12796 0.0104 (31/2991) 0 * * Os_TE_571729 Chr2 32978702 32978701 - RIREX_LTR 8828 0.0003 (1/2993) 0 * * Os_TE_571728 Chr2 32978238 32978239 - COPIA2-LTR_OS 6433 0.0003 (1/2958) 0 * Os_TE_571727 Os_TE_571727 Chr2 32978234 32978233 + COPIA2-LTR_OS 6433 0.0003 (1/2978) 0 * Os_TE_571728 Os_TE_571723 Chr2 32976895 32976896 - ORSgTETNOOT02565 240 0.6122 (1784/2914) 0 * * Os_TE_571684 Chr2 32949394 32949395 - SC-8_LTR 4951 0.0003 (1/2979) 0 * Os_TE_571683 Os_TE_571683 Chr2 32949390 32949389 + ORSiTERTOOT00381 4988 0.0003 (1/2979) 0 * Os_TE_571684 Os_TE_571673 Chr2 32944081 32944082 + SC-8_LTR 4951 0.0003 (1/2995) 0 * Os_TE_571672 Os_TE_571672 Chr2 32944077 32944076 - SC-8_LTR 4951 0.0003 (1/2993) 0 * Os_TE_571673 Os_TE_571653 Chr2 32931600 32931599 - GYPSY-A_LTR 8951 0.0020 (3/1472) 0 * * Os_TE_571636 Chr2 32924585 32924586 - ORSiTERTOOT00441 4741 0.0007 (2/2938) 0 * Os_TE_571635 Os_TE_571635 Chr2 32924581 32924580 + ORSiTERTOOT00441 4741 0.0007 (2/2944) 0 * Os_TE_571636 Os_TE_571623 Chr2 32922307 32922306 - COPI2_LTR 4733 0.0003 (1/2962) 0 * * Os_TE_571589 Chr2 32906663 32906662 - SC-8_LTR 4951 0.0003 (1/2935) 0 * * Os_TE_571569 Chr2 32895929 32895928 - MPING 430 0.0003 (1/2975) 0 * * Os_TE_571568 Chr2 32894811 32894810 + SZ-30_LTR 6377 0.0003 (1/2862) 0 * * Os_TE_571485 Chr2 32872132 32872133 - INDITTO 263 0.0028 (7/2470) 0 * Os_TE_571482 Os_TE_571482 Chr2 32872121 32872120 - ORSgTETNOOT00053 263 0.1440 (408/2834) 0 * Os_TE_571485 Os_TE_571467 Chr2 32860381 32860382 - SC-8_LTR 4951 0.0003 (1/2985) 0 * Os_TE_571466 Os_TE_571466 Chr2 32860377 32860376 + SC-8_LTR 4951 0.0003 (1/2987) 0 * Os_TE_571467 Os_TE_571460 Chr2 32858538 32858301 - ORSgTEMT00901269 237 0.8583 (2569/2993) 1 Intact * Os_TE_571437 Chr2 32854741 32854740 - STOWAWAY51_OS 246 0.0010 (3/2932) 0 * * Os_TE_571402 Chr2 32846178 32846179 - HARB-1_OS 5166 0.0010 (3/2958) 0 * * Os_TE_571382 Chr2 32842686 32842687 + COPIA2-LTR_OS 6433 0.0571 (161/2820) 0 * Os_TE_571381 Os_TE_571381 Chr2 32842682 32842681 - COPIA2-LTR_OS 6433 0.0578 (165/2856) 0 * Os_TE_571382 Os_TE_571370 Chr2 32838596 32838595 + ORSgTETNOOT01313 249 0.0003 (1/2988) 0 * * Os_TE_571267 Chr2 32786698 32785955 - CLOUD 734 0.3122 (918/2940) 1 Intact Os_TE_571266 Os_TE_571266 Chr2 32785955 32786698 - CLOUD 734 0.3001 (888/2959) 1 Intact Os_TE_571267 Os_TE_571242 Chr2 32774527 32774528 + COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_571241 Os_TE_571241 Chr2 32774523 32774522 - COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_571242 Os_TE_571226 Chr2 32769484 32769375 - OSTE18 129 0.3128 (937/2996) 1 Intact * Os_TE_571220 Chr2 32768331 32755494 + ORSgTERTOOT00009 12852 0.3184 (920/2889) 1 Intact Os_TE_571208 Os_TE_571208 Chr2 32755494 32768331 - RETRO2_LTR 12874 0.3173 (921/2903) 0.88 Intact Os_TE_571220 Os_TE_571203 Chr2 32754603 32754604 + HARB-1_OS 5166 0.0010 (3/2999) 0 * Os_TE_571202 Os_TE_571202 Chr2 32754601 32754600 - HARB-1_OS 5166 0.0010 (3/2999) 0 * Os_TE_571203 Os_TE_571189 Chr2 32751346 32751345 + COPI2_LTR 4733 0.0003 (1/2993) 0 * * Os_TE_571178 Chr2 32740757 32740758 + TRSA_OS 353 0.0003 (1/2944) 0 * * Os_TE_571171 Chr2 32732211 32732212 + SC-8_LTR 4951 0.0007 (2/2992) 0 * Os_TE_571170 Os_TE_571170 Chr2 32732207 32732206 - SC-8_LTR 4951 0.0007 (2/2992) 0 * Os_TE_571171 Os_TE_571132 Chr2 32715952 32710748 + ORSiTERTOOT00023 5086 0.3200 (952/2975) 1 Intact * Os_TE_571101 Chr2 32694159 32694160 - RETRO1_LTR 8314 0.5134 (1518/2957) 0 * Os_TE_571100 Os_TE_571100 Chr2 32694157 32694156 + RETRO2A_LTR 12895 0.5205 (1551/2980) 0 * Os_TE_571101 Os_TE_571091 Chr2 32686260 32686261 + COPI2_LTR 4733 0.0013 (4/2992) 0 * Os_TE_571090 Os_TE_571090 Chr2 32686256 32686255 - COPI2_LTR 4733 0.0017 (5/2993) 0 * Os_TE_571091 Os_TE_571069 Chr2 32668346 32668345 + ORSgTEMT01601591 242 0.0013 (4/2994) 0 * * Os_TE_571059 Chr2 32665493 32665494 + ORSgTETNOOT00908 242 0.0311 (92/2958) 0 * Os_TE_571058 Os_TE_571058 Chr2 32665487 32665486 + ORSgTETNOOT01219 231 0.0304 (90/2961) 0 * Os_TE_571059 Os_TE_571056 Chr2 32663513 32663514 + COPIA2-LTR_OS 6433 0.0003 (1/2937) 0 * Os_TE_571055 Os_TE_571055 Chr2 32663509 32663508 - COPIA2-LTR_OS 6433 0.0003 (1/2955) 0 * Os_TE_571056 Os_TE_571048 Chr2 32655877 32655878 - SZ-9LTR 965 0.6896 (1982/2874) 0 * * Os_TE_571042 Chr2 32653489 32653490 + SC-8_LTR 4951 0.0003 (1/2989) 0 * Os_TE_571041 Os_TE_571041 Chr2 32653485 32653484 - SC-8_LTR 4951 0.0003 (1/2989) 0 * Os_TE_571042 Os_TE_571039 Chr2 32652025 32652026 - SC-3_LTR 5748 0.0003 (1/2994) 0 * Os_TE_571038 Os_TE_571038 Chr2 32652021 32652020 + ORSiTERTOOT00296 5553 0.0003 (1/2991) 0 * Os_TE_571039 Os_TE_571020 Chr2 32641725 32641726 - COPI2_LTR 4733 0.0007 (2/2979) 0 * Os_TE_571019 Os_TE_571019 Chr2 32641721 32641720 + COPI2_LTR 4733 0.0010 (3/2975) 0 * Os_TE_571020 Os_TE_570990 Chr2 32635722 32635723 - ORSgTETN00200001 10994 0.0003 (1/2994) 0 * Os_TE_570989 Os_TE_570989 Chr2 32635720 32635719 + SPMLIKE 10989 0.0003 (1/2997) 0 * Os_TE_570990 Os_TE_570979 Chr2 32630786 32634687 - SZ-35LTR 3853 0.3260 (932/2859) 1 Intact * Os_TE_570977 Chr2 32630258 32630257 + ENSPM4_OS 11610 0.6156 (1544/2508) 0 * * Os_TE_570950 Chr2 32624066 32624067 - INDITTO 263 0.6955 (2081/2992) 0 * Os_TE_570948 Os_TE_570948 Chr2 32624055 32624054 - ORSgTETNOOT02044 254 0.0021 (2/955) 0 * Os_TE_570950 Os_TE_570945 Chr2 32623039 32623038 - ORSgTETN00200002 7303 0.0003 (1/2885) 0 * * Os_TE_570870 Chr2 32588896 32588897 - SC-7_LTR 4431 0.1230 (368/2991) 0 * Os_TE_570869 Os_TE_570869 Chr2 32588892 32588891 + SC-7_LTR 4431 0.1222 (365/2987) 0 * Os_TE_570870 Os_TE_570837 Chr2 32573655 32573656 + ORSgTETNOOT01219 231 0.2976 (411/1381) 0 * Os_TE_570836 Os_TE_570836 Chr2 32573649 32573648 + ORSgTETNOOT00908 242 0.6925 (2074/2995) 0 * Os_TE_570837 Os_TE_570811 Chr2 32559701 32559702 + AMYLTP 383 0.6787 (1998/2944) 0 * Os_TE_570810 Os_TE_570810 Chr2 32559693 32559692 - AMYLTP 383 0.6860 (2047/2984) 0 * Os_TE_570811 Os_TE_570809 Chr2 32558680 32558681 - COPI2_LTR 4733 0.0003 (1/2988) 0 * * Os_TE_570806 Chr2 32557446 32557447 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_570805 Os_TE_570805 Chr2 32557442 32557441 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_570806 Os_TE_570770 Chr2 32549677 32549678 - MPING 430 0.0003 (1/2989) 0 * Os_TE_570769 Os_TE_570769 Chr2 32549675 32549674 + MPING 430 0.0003 (1/2993) 0 * Os_TE_570770 Os_TE_570767 Chr2 32548568 32548569 - COPIA2-LTR_OS 6433 0.0023 (7/2997) 0 * Os_TE_570766 Os_TE_570766 Chr2 32548564 32548563 + COPIA2-LTR_OS 6433 0.0020 (6/2994) 0 * Os_TE_570767 Os_TE_570764 Chr2 32547962 32547961 + COPI2_LTR 4733 0.0003 (1/2998) 0 * * Os_TE_570755 Chr2 32543507 32543508 + INDITTO 263 0.0094 (28/2975) 0 * * Os_TE_570750 Chr2 32540734 32540733 - STOWAWAY51_OS 246 0.0010 (3/2985) 0 * * Os_TE_570723 Chr2 32528031 32528030 - AMYLTP 383 0.0013 (4/2987) 0 * * Os_TE_570714 Chr2 32521503 32525401 - RETROSAT4_LTR 13504 0.3329 (973/2923) 1 Solo_LTR * Os_TE_570707 Chr2 32513680 32513679 + ORSgTEMT00300063 413 0.0245 (73/2977) 0 * * Os_TE_570706 Chr2 32509491 32509492 + SZ-28LTR 262 0.0003 (1/2985) 0 * * Os_TE_570682 Chr2 32493804 32494045 + ORSgTETNOOT00908 242 0.3042 (912/2998) 1 Intact * Os_TE_570659 Chr2 32478848 32478849 - INDITTO 263 0.0040 (12/2983) 0 * Os_TE_570658 Os_TE_570658 Chr2 32478846 32478845 - INDITTO 263 0.0060 (18/2985) 0 * Os_TE_570659 Os_TE_570655 Chr2 32478584 32478585 + INDITTO 263 0.0003 (1/2978) 0 * Os_TE_570654 Os_TE_570654 Chr2 32478582 32478581 - INDITTO 263 0.0003 (1/2985) 0 * Os_TE_570655 Os_TE_570652 Chr2 32478238 32478239 + OLO24 345 0.0003 (1/2995) 0 * * Os_TE_570626 Chr2 32458377 32458378 + ORSgTETNOOT02316 263 0.0040 (12/2995) 0 * Os_TE_570625 Os_TE_570625 Chr2 32458375 32458374 - ORSgTETNOOT02539 260 0.0040 (12/2995) 0 * Os_TE_570626 Os_TE_570623 Chr2 32455861 32455862 + COPIA2-LTR_OS 6433 0.0003 (1/2986) 0 * Os_TE_570622 Os_TE_570622 Chr2 32455857 32455856 - COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * Os_TE_570623 Os_TE_570603 Chr2 32445434 32445435 - GYPSY-A_LTR 8951 0.0064 (19/2954) 0 * Os_TE_570602 Os_TE_570602 Chr2 32445430 32445429 + SZ-40LTR 2465 0.0064 (19/2954) 0 * Os_TE_570603 Os_TE_570601 Chr2 32445136 32442023 + RETROSAT2LTR 12796 0.3060 (911/2977) 1 Solo_LTR Os_TE_570595 Os_TE_570595 Chr2 32442021 32445136 - RETROSAT2LTR 12796 0.3843 (958/2493) 1 Solo_LTR Os_TE_570601 Os_TE_570594 Chr2 32441993 32441992 - TYPEM 227 0.4783 (1200/2509) 0 * Os_TE_570593 Os_TE_570593 Chr2 32441990 32441991 - ORSgTEMT02400246 177 0.5615 (1681/2994) 0 * Os_TE_570594 Os_TE_570592 Chr2 32441609 32441610 - COPI2_LTR 4733 0.0043 (13/2995) 0 * Os_TE_570591 Os_TE_570591 Chr2 32441605 32441604 + COPI2_LTR 4733 0.0043 (13/2994) 0 * Os_TE_570592 Os_TE_570554 Chr2 32431918 32431919 + STOWAWAY9_OS 235 0.0014 (4/2917) 0 * * Os_TE_570536 Chr2 32429480 32429729 - ORSgTEMT00901269 237 0.7869 (2352/2989) 1 Intact * Os_TE_570512 Chr2 32416892 32416891 + ORSgTEMT01601591 242 0.0020 (6/2989) 0 * * Os_TE_570473 Chr2 32397176 32397177 - INDITTO 263 0.0045 (13/2894) 0 * Os_TE_570472 Os_TE_570472 Chr2 32397174 32397173 + INDITTO 263 0.0045 (13/2892) 0 * Os_TE_570473 Os_TE_570453 Chr2 32384532 32384533 - ORSiTETNOOT00134 607 0.0011 (3/2733) 0 * * Os_TE_570449 Chr2 32382654 32382655 - TRUNCATOR2_LTR 2904 0.0013 (4/2997) 0 * Os_TE_570448 Os_TE_570448 Chr2 32382650 32382649 + ORSiCMCM00100019 2717 0.0013 (4/2997) 0 * Os_TE_570449 Os_TE_570431 Chr2 32371672 32371673 + SC-8_LTR 4951 0.0013 (4/2973) 0 * Os_TE_570430 Os_TE_570430 Chr2 32371668 32371667 - SC-8_LTR 4951 0.0013 (4/2972) 0 * Os_TE_570431 Os_TE_570428 Chr2 32369534 32369535 + RIREX_LTR 8828 0.0010 (3/2960) 0 * Os_TE_570427 Os_TE_570427 Chr2 32369530 32369529 - RIREX_LTR 8828 0.0010 (3/2962) 0 * Os_TE_570428 Os_TE_570424 Chr2 32368401 32368402 - COPI2_LTR 4733 0.0003 (1/2993) 0 * Os_TE_570423 Os_TE_570423 Chr2 32368397 32368396 + COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_570424 Os_TE_570422 Chr2 32368369 32368370 + COPI2_LTR 4733 0.0030 (9/2993) 0 * Os_TE_570421 Os_TE_570421 Chr2 32368365 32368364 - COPI2_LTR 4733 0.0030 (9/2993) 0 * Os_TE_570422 Os_TE_570407 Chr2 32357627 32357628 - RIREX_LTR 8828 0.0003 (1/2966) 0 * * Os_TE_570382 Chr2 32352306 32352307 - SC-3_LTR 5748 0.0003 (1/2991) 0 * Os_TE_570381 Os_TE_570381 Chr2 32352302 32352301 + ORSiTERTOOT00296 5553 0.0003 (1/2996) 0 * Os_TE_570382 Os_TE_570341 Chr2 32337092 32337091 + ORSgTETNOOT02316 263 0.0020 (6/2993) 0 * * Os_TE_570289 Chr2 32310670 32310669 - COPI2_LTR 4733 0.0003 (1/2980) 0 * * Os_TE_570262 Chr2 32298171 32298172 - SC-3_LTR 5748 0.0003 (1/2991) 0 * Os_TE_570261 Os_TE_570261 Chr2 32298167 32298166 + ORSiTERTOOT00296 5553 0.0003 (1/2984) 0 * Os_TE_570262 Os_TE_570228 Chr2 32280792 32280793 - COPIA2-LTR_OS 6433 0.0003 (1/2976) 0 * * Os_TE_570188 Chr2 32260450 32260451 - COPIA2-LTR_OS 6433 0.0007 (2/2983) 0 * Os_TE_570187 Os_TE_570187 Chr2 32260446 32260445 + COPIA2-LTR_OS 6433 0.0007 (2/2993) 0 * Os_TE_570188 Os_TE_570144 Chr2 32242231 32241992 - ORSgTEMT01601432 239 0.3138 (936/2983) 1 Intact Os_TE_570143 Os_TE_570143 Chr2 32241992 32242228 - ORSgTEMT01600201 236 0.3142 (937/2982) 1 Intact Os_TE_570144 Os_TE_570118 Chr2 32222285 32215843 + COPIA2-LTR_OS 6433 0.3129 (929/2969) 1 Intact Os_TE_570114 Os_TE_570114 Chr2 32215843 32222285 - COPIA2-LTR_OS 6433 0.3196 (951/2976) 1 Intact Os_TE_570118 Os_TE_570107 Chr2 32213881 32213882 - ORSgTEMT00600085 364 0.6927 (2065/2981) 0 * Os_TE_570106 Os_TE_570106 Chr2 32213879 32213878 + ORSgTEMT00600272 361 0.6910 (2064/2987) 0 * Os_TE_570107 Os_TE_570103 Chr2 32213001 32213002 - ORSiTERTOOT00074 4935 0.0004 (1/2575) 0 * * Os_TE_570099 Chr2 32212294 32212295 + MDR2 6967 0.6924 (2066/2984) 0 * * Os_TE_570088 Chr2 32210851 32210852 + SZ-35LTR 3853 0.6457 (1562/2419) 0 * Os_TE_570087 Os_TE_570087 Chr2 32210847 32210846 - SZ-35LTR 3853 0.7109 (2043/2874) 0 * Os_TE_570088 Os_TE_570084 Chr2 32210323 32206512 - SZ-67LTR 1540 0.3303 (950/2876) 1 Intact Os_TE_570081 Os_TE_570081 Chr2 32206512 32210322 + SZ-67LTR 1540 0.3229 (915/2834) 1 Intact Os_TE_570084 Os_TE_570080 Chr2 32206097 32205733 - ORSgTEMT00600085 364 0.3354 (940/2803) 1 Intact Os_TE_570076 Os_TE_570076 Chr2 32205733 32206097 + CASTAWAY 364 0.3186 (949/2979) 1 Intact Os_TE_570080 Os_TE_570066 Chr2 32197122 32197121 - CRMA1_LTR 7543 0.0003 (1/2862) 0 * * Os_TE_570061 Chr2 32196105 32196309 - ORSgTEMT00900028 255 0.8393 (2480/2955) 1 Intact * Os_TE_570059 Chr2 32195776 32195777 - TRUNCATOR2_LTR 2904 0.0003 (1/2925) 0 * Os_TE_570058 Os_TE_570058 Chr2 32195772 32195771 + ORSiTERTOOT00028 8600 0.0003 (1/2941) 0 * Os_TE_570059 Os_TE_570041 Chr2 32194355 32194356 + ORSiTETN00100011 676 0.0003 (1/2928) 0 * * Os_TE_570031 Chr2 32191811 32191812 + INDITTO 263 0.0013 (4/2990) 0 * Os_TE_570030 Os_TE_570030 Chr2 32191809 32191808 - INDITTO 263 0.0013 (4/2992) 0 * Os_TE_570031 Os_TE_569982 Chr2 32163572 32163968 - ORSgTEMT00300160 419 0.3144 (939/2987) 1 Intact * Os_TE_569981 Chr2 32162844 32162845 + HARB-1_OS 5166 0.0003 (1/2944) 0 * Os_TE_569980 Os_TE_569980 Chr2 32162842 32162841 - HARB-1_OS 5166 0.0003 (1/2986) 0 * Os_TE_569981 Os_TE_569923 Chr2 32124017 32124018 + TELIA 141 0.0007 (2/2971) 0 * * Os_TE_569904 Chr2 32113365 32113364 - STOWAWAY51_OS 246 0.0003 (1/2999) 0 * Os_TE_569903 Os_TE_569903 Chr2 32113359 32113360 + STOWAWAY51_OS 246 0.0003 (1/2998) 0 * Os_TE_569904 Os_TE_569886 Chr2 32107057 32107058 - COPI2_LTR 4733 0.0003 (1/2992) 0 * Os_TE_569885 Os_TE_569885 Chr2 32107052 32107051 + COPI2_LTR 4733 0.0003 (1/2990) 0 * Os_TE_569886 Os_TE_569877 Chr2 32103350 32103351 - MPING 430 0.0007 (2/2983) 0 * Os_TE_569876 Os_TE_569876 Chr2 32103348 32103347 + MPING 430 0.0007 (2/2984) 0 * Os_TE_569877 Os_TE_569875 Chr2 32098029 32097908 + SINE1OS 127 0.5127 (1517/2959) 1 Intact Os_TE_569874 Os_TE_569874 Chr2 32097906 32098029 - SINE16_OS 116 0.5158 (1537/2980) 1 Intact Os_TE_569875 Os_TE_569855 Chr2 32090329 32090330 - STOWAWAY51_OS 246 0.0013 (3/2371) 0 * * Os_TE_569797 Chr2 32045075 32045074 + HELITRON3_OS 12693 0.4686 (1334/2847) 0 * Os_TE_569796 Os_TE_569796 Chr2 32045074 32045075 - HELITRON2_OS 15167 0.5074 (1513/2982) 0 * Os_TE_569797 Os_TE_569775 Chr2 32035186 32035187 + ORSgTEMT00500020 148 0.6792 (2028/2986) 0 * * Os_TE_569740 Chr2 32021458 32021459 + AMYLTP 383 0.0017 (5/2880) 0 * Os_TE_569739 Os_TE_569739 Chr2 32021449 32021448 - AMYLTP 383 0.0017 (5/2884) 0 * Os_TE_569740 Os_TE_569731 Chr2 32014009 32014010 - SC-8_LTR 4951 0.0003 (1/2980) 0 * Os_TE_569730 Os_TE_569730 Chr2 32014005 32014004 + ORSiTERTOOT00381 4988 0.0003 (1/2973) 0 * Os_TE_569731 Os_TE_569722 Chr2 32006567 32006568 - CASTAWAY 364 0.1510 (451/2987) 0 * Os_TE_569721 Os_TE_569721 Chr2 32006565 32006564 - ORSgTEMT00600304 361 0.1489 (444/2981) 0 * Os_TE_569722 Os_TE_569714 Chr2 32003950 32003949 - TNR2A 152 0.0020 (6/2972) 0 * * Os_TE_569680 Chr2 31984308 31984309 - RIREX_LTR 8828 0.0003 (1/2979) 0 * Os_TE_569679 Os_TE_569679 Chr2 31984304 31984303 + RIREX_LTR 8828 0.0003 (1/2987) 0 * Os_TE_569680 Os_TE_569665 Chr2 31981994 31981995 + INDITTO 263 0.1460 (435/2980) 0 * Os_TE_569664 Os_TE_569664 Chr2 31981992 31981991 - INDITTO 263 0.1393 (400/2871) 0 * Os_TE_569665 Os_TE_569651 Chr2 31978614 31978613 + ORSgTEMT01701388 146 0.0003 (1/2958) 0 * * Os_TE_569626 Chr2 31963094 31963093 - KRISPIE 956 0.0003 (1/2996) 0 * * Os_TE_569620 Chr2 31960340 31960341 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * * Os_TE_569578 Chr2 31934847 31934846 + COPI2_LTR 4733 0.0003 (1/2962) 0 * * Os_TE_569577 Chr2 31934808 31934809 + COPI2_LTR 4733 0.0003 (1/2983) 0 * * Os_TE_569487 Chr2 31902065 31902064 + STOWAWAY51_OS 246 0.0003 (1/2997) 0 * Os_TE_569486 Os_TE_569486 Chr2 31902059 31902060 - STOWAWAY51_OS 246 0.0003 (1/2997) 0 * Os_TE_569487 Os_TE_569485 Chr2 31900604 31900605 - INDITTO 263 0.0047 (14/2999) 0 * * Os_TE_569416 Chr2 31849206 31849207 + MPING 430 0.0003 (1/2991) 0 * Os_TE_569415 Os_TE_569415 Chr2 31849204 31849203 - MPING 430 0.0003 (1/2990) 0 * Os_TE_569416 Os_TE_569414 Chr2 31848971 31848972 - HARB-1_OS 5166 0.0003 (1/2987) 0 * Os_TE_569413 Os_TE_569413 Chr2 31848969 31848968 + HARB-1_OS 5166 0.0003 (1/2990) 0 * Os_TE_569414 Os_TE_569375 Chr2 31831816 31825968 - COPIA2-LTR_OS 6433 0.3366 (1008/2995) 1 Intact Os_TE_569369 Os_TE_569369 Chr2 31825559 31831816 + COPIA2-LTR_OS 6433 0.3237 (955/2950) 1 Intact Os_TE_569375 Os_TE_569330 Chr2 31808947 31808948 + INDITTO 263 0.0200 (60/2995) 0 * Os_TE_569329 Os_TE_569329 Chr2 31808945 31808944 - INDITTO 263 0.0200 (60/2995) 0 * Os_TE_569330 Os_TE_569328 Chr2 31808727 31808728 - STOWAWAY44_OS 240 0.0030 (9/2989) 0 * * Os_TE_569324 Chr2 31807527 31807526 - RIREX_LTR 8828 0.0053 (16/2998) 0 * * Os_TE_569321 Chr2 31805426 31805166 + INDITTO 263 0.3356 (1005/2995) 1 Intact Os_TE_569318 Os_TE_569318 Chr2 31805165 31805426 - INDITTO 263 0.3355 (1003/2990) 1 Intact Os_TE_569321 Os_TE_569317 Chr2 31804103 31804104 - COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_569316 Os_TE_569316 Chr2 31804099 31804098 + COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_569317 Os_TE_569305 Chr2 31800304 31800303 + ORSiTERTOOT00028 8600 0.0003 (1/2967) 0 * Os_TE_569304 Os_TE_569304 Chr2 31800294 31800295 - TRUNCATOR2_LTR 2904 0.0003 (1/2971) 0 * Os_TE_569305 Os_TE_569274 Chr2 31780459 31780460 + COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_569273 Os_TE_569273 Chr2 31780455 31780454 - COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_569274 Os_TE_569229 Chr2 31739510 31739511 + F770 284 0.5194 (1527/2940) 0 * * Os_TE_569227 Chr2 31738796 31738797 + MPING 430 0.0127 (38/2994) 0 * Os_TE_569226 Os_TE_569226 Chr2 31738794 31738793 - MPING 430 0.0127 (38/2997) 0 * Os_TE_569227 Os_TE_569149 Chr2 31698102 31698103 + ORSgTEMT00300069 394 0.0019 (2/1040) 0 * * Os_TE_569148 Chr2 31697119 31697120 + ORSiTERTOOT00033 4884 0.0003 (1/2901) 0 * Os_TE_569147 Os_TE_569147 Chr2 31697116 31697115 - RETROFIT_LTR 4866 0.0003 (1/2876) 0 * Os_TE_569148 Os_TE_569130 Chr2 31692926 31692925 + RIREX_LTR 8828 0.0003 (1/2998) 0 * * Os_TE_569120 Chr2 31685858 31685859 - COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_569119 Os_TE_569119 Chr2 31685854 31685853 + COPI2_LTR 4733 0.0003 (1/2993) 0 * Os_TE_569120 Os_TE_569097 Chr2 31679922 31679923 + TWIF 586 0.0117 (35/2991) 0 * Os_TE_569096 Os_TE_569096 Chr2 31679915 31679914 - ORSiTETNOOT00134 607 0.0114 (34/2991) 0 * Os_TE_569097 Os_TE_569086 Chr2 31671876 31671875 - HELITRON7_OS 10153 0.0168 (50/2985) 0 * Os_TE_569085 Os_TE_569085 Chr2 31671872 31671873 + HELITRON7_OS 10153 0.0178 (53/2984) 0 * Os_TE_569086 Os_TE_569078 Chr2 31670015 31670014 - STOWAWAY51_OS 246 0.0003 (1/2995) 0 * * Os_TE_569073 Chr2 31666736 31666737 + MUDRN5_OS 374 0.0007 (2/2990) 0 * * Os_TE_569066 Chr2 31658999 31659000 + EnSpm-13_OS 11171 0.0003 (1/2979) 0 * Os_TE_569065 Os_TE_569065 Chr2 31658997 31658996 - EnSpm-13_OS 11171 0.0003 (1/2980) 0 * Os_TE_569066 Os_TE_569061 Chr2 31655920 31655921 - COPIA2-LTR_OS 6433 0.0007 (2/2993) 0 * Os_TE_569060 Os_TE_569060 Chr2 31655916 31655915 + COPIA2-LTR_OS 6433 0.0007 (2/2994) 0 * Os_TE_569061 Os_TE_569042 Chr2 31650279 31650280 - COPIA2-LTR_OS 6433 0.0007 (2/2987) 0 * Os_TE_569041 Os_TE_569041 Chr2 31650275 31650274 + COPIA2-LTR_OS 6433 0.0007 (2/2989) 0 * Os_TE_569042 Os_TE_568971 Chr2 31627816 31627817 + MPING 430 0.0004 (1/2824) 0 * * Os_TE_568952 Chr2 31611923 31611924 + INDITTO 263 0.1267 (379/2991) 0 * Os_TE_568951 Os_TE_568951 Chr2 31611921 31611920 - INDITTO 263 0.1250 (374/2992) 0 * Os_TE_568952 Os_TE_568938 Chr2 31601281 31601282 + ORSgTEMT01400012 212 0.0945 (26/275) -1 * * Os_TE_568909 Chr2 31581228 31581229 - AMYLTP 383 0.6697 (1995/2979) 0 * * Os_TE_568896 Chr2 31579800 31579801 - SZ-67LTR 1540 0.0003 (1/2943) 0 * * Os_TE_568878 Chr2 31571089 31571090 - COPI2_LTR 4733 0.0010 (3/2982) 0 * Os_TE_568877 Os_TE_568877 Chr2 31571085 31571084 + COPI2_LTR 4733 0.0010 (3/2998) 0 * Os_TE_568878 Os_TE_568855 Chr2 31550975 31550976 - COPIA2-LTR_OS 6433 0.0003 (1/2976) 0 * Os_TE_568854 Os_TE_568854 Chr2 31550971 31550970 + COPIA2-LTR_OS 6433 0.0003 (1/2981) 0 * Os_TE_568855 Os_TE_568852 Chr2 31550361 31550362 + HARB-1_OS 5166 0.0003 (1/2971) 0 * Os_TE_568851 Os_TE_568851 Chr2 31550359 31550358 - HARB-1_OS 5166 0.0003 (1/2970) 0 * Os_TE_568852 Os_TE_568840 Chr2 31548920 31548921 - RIREX_LTR 8828 0.0007 (2/2998) 0 * Os_TE_568839 Os_TE_568839 Chr2 31548916 31548915 + RIREX_LTR 8828 0.0007 (2/2998) 0 * Os_TE_568840 Os_TE_568838 Chr2 31548648 31548649 + CPR1_LTR 9493 0.0013 (4/2996) 0 * * Os_TE_568824 Chr2 31545378 31544961 + ORSgTEMT00300069 394 0.3354 (996/2970) 1 Intact Os_TE_568822 Os_TE_568822 Chr2 31544959 31545372 + ORSgTEMT00300063 413 0.3408 (1008/2958) 1 Intact Os_TE_568824 Os_TE_568821 Chr2 31544111 31544112 + COPIA2-LTR_OS 6433 0.0003 (1/2940) 0 * Os_TE_568820 Os_TE_568820 Chr2 31544107 31544106 - COPIA2-LTR_OS 6433 0.0003 (1/2940) 0 * Os_TE_568821 Os_TE_568814 Chr2 31541780 31541779 + NDNA1TNA_OS 334 0.5493 (1638/2982) 0 * * Os_TE_568760 Chr2 31514060 31514061 - RETRO2_LTR 12874 0.0027 (8/2936) 0 * * Os_TE_568752 Chr2 31510596 31510597 - SC-8_LTR 4951 0.0010 (3/2993) 0 * Os_TE_568751 Os_TE_568751 Chr2 31510592 31510591 + ORSiTERTOOT00381 4988 0.0010 (3/2993) 0 * Os_TE_568752 Os_TE_568738 Chr2 31501024 31501025 + HARB-1_OS 5166 0.0254 (76/2996) 0 * Os_TE_568737 Os_TE_568737 Chr2 31501022 31501021 - HARB-1_OS 5166 0.0257 (77/2998) 0 * Os_TE_568738 Os_TE_568728 Chr2 31494854 31494853 - NDNA2TNA_OS 346 0.6652 (1985/2984) 0 * * Os_TE_568727 Chr2 31494847 31494846 + ORSgTEMT00100965 159 0.1129 (335/2967) 0 * * Os_TE_568712 Chr2 31488814 31488815 - SZ-22_LTR 4403 0.0003 (1/2960) 0 * Os_TE_568711 Os_TE_568711 Chr2 31488810 31488809 + ORSiTERTOOT00226 792 0.0003 (1/2964) 0 * Os_TE_568712 Os_TE_568705 Chr2 31486883 31486884 - COPI2_LTR 4733 0.0010 (3/2928) 0 * * Os_TE_568694 Chr2 31483282 31483283 - MPING 430 0.0003 (1/2997) 0 * Os_TE_568693 Os_TE_568693 Chr2 31483280 31483279 + MPING 430 0.0003 (1/2992) 0 * Os_TE_568694 Os_TE_568690 Chr2 31472376 31472377 + HARB-N1_OS 2589 0.0013 (4/2988) 0 * Os_TE_568689 Os_TE_568689 Chr2 31472374 31472373 - HARB-N1_OS 2589 0.0017 (5/2989) 0 * Os_TE_568690 Os_TE_568688 Chr2 31472287 31472288 + COPIA2-LTR_OS 6433 0.0003 (1/2977) 0 * Os_TE_568687 Os_TE_568687 Chr2 31472283 31472282 - COPIA2-LTR_OS 6433 0.0003 (1/2979) 0 * Os_TE_568688 Os_TE_568668 Chr2 31463662 31463661 - STOWAWAY51_OS 246 0.0003 (1/2996) 0 * Os_TE_568667 Os_TE_568667 Chr2 31463659 31463660 - STOWAWAY51_OS 246 0.0003 (1/2994) 0 * Os_TE_568668 Os_TE_568648 Chr2 31455855 31455854 + ORSiTEMT01000008 242 0.6657 (1989/2988) 0 * Os_TE_568647 Os_TE_568647 Chr2 31455854 31455855 + ORSgTETNOOT00908 242 0.6682 (1998/2990) 0 * Os_TE_568648 Os_TE_568629 Chr2 31451306 31451307 - ORSiTERTOOT00332 5395 0.0013 (4/2984) 0 * Os_TE_568628 Os_TE_568628 Chr2 31451302 31451301 + ORSiTERTOOT00332 5395 0.0013 (4/2979) 0 * Os_TE_568629 Os_TE_568626 Chr2 31450837 31450836 + MUDRN5_OS 374 0.0020 (6/2990) 0 * * Os_TE_568615 Chr2 31449162 31449163 + MUDRN5_OS 374 0.0003 (1/2926) 0 * * Os_TE_568581 Chr2 31420023 31420024 + SZ-40LTR 2465 0.0003 (1/2991) 0 * Os_TE_568580 Os_TE_568580 Chr2 31420019 31420018 - GYPSY-A_LTR 8951 0.0003 (1/2992) 0 * Os_TE_568581 Os_TE_568579 Chr2 31419708 31419709 + ORSgTETNOOT01998 254 0.0050 (15/2995) 0 * Os_TE_568578 Os_TE_568578 Chr2 31419706 31419705 - ORSgTETNOOT00754 253 0.0043 (13/2996) 0 * Os_TE_568579 Os_TE_568573 Chr2 31418094 31418093 + ORSiTERTOOT00226 792 0.0004 (1/2772) -1 * * Os_TE_568552 Chr2 31407223 31407224 - TELIA 141 0.0003 (1/2984) 0 * Os_TE_568551 Os_TE_568551 Chr2 31407215 31407214 + TELIA 141 0.0003 (1/2984) 0 * Os_TE_568552 Os_TE_568545 Chr2 31405636 31405637 - INDITTO 263 0.0010 (3/2996) 0 * Os_TE_568544 Os_TE_568544 Chr2 31405634 31405633 + INDITTO 263 0.0010 (3/2996) 0 * Os_TE_568545 Os_TE_568532 Chr2 31395630 31395631 + KIDDOC 275 0.0007 (2/2954) 0 * Os_TE_568531 Os_TE_568531 Chr2 31395626 31395625 - KIDDOC 275 0.0007 (2/2930) 0 * Os_TE_568532 Os_TE_568522 Chr2 31391417 31391418 - ORSgTEMT01700159 154 0.0007 (2/2982) 0 * * Os_TE_568520 Chr2 31390111 31377038 - SZ-52_LTR 13107 0.3433 (1022/2977) 1 Intact Os_TE_568515 Os_TE_568515 Chr2 31377038 31390111 + SZ-52_LTR 13107 0.3423 (1017/2971) 1 Intact Os_TE_568520 Os_TE_568514 Chr2 31375954 31375955 - COPI2_LTR 4733 0.0003 (1/2927) 0 * * Os_TE_568480 Chr2 31363690 31363689 - RIRE3_LTR 12054 0.0017 (5/2979) 0 * * Os_TE_568468 Chr2 31360277 31356313 - RETROSAT4_LTR 13504 0.3408 (1019/2990) 1 Solo_LTR * Os_TE_568454 Chr2 31353125 31353124 + CASTAWAY-3 314 0.0725 (217/2994) 0 * * Os_TE_568443 Chr2 31350096 31338506 - ORSgTETN00200001 10994 0.3360 (998/2970) 1 Intact Os_TE_568431 Os_TE_568431 Chr2 31338506 31350096 + SPMLIKE 10989 0.1922 (477/2482) -1 Intact Os_TE_568443 Os_TE_568428 Chr2 31337281 31334204 - TRUNCATOR2_LTR 2904 0.3692 (1006/2725) 1 Intact Os_TE_568423 Os_TE_568423 Chr2 31334204 31337281 + TRUNCATOR2_LTR 2904 0.3620 (956/2641) 1 Intact Os_TE_568428 Os_TE_568405 Chr2 31315939 31315940 - COPIA2-LTR_OS 6433 0.0003 (1/2953) 0 * Os_TE_568404 Os_TE_568404 Chr2 31315935 31315934 + COPIA2-LTR_OS 6433 0.0003 (1/2961) 0 * Os_TE_568405 Os_TE_568391 Chr2 31308582 31308581 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * * Os_TE_568390 Chr2 31308107 31308108 - STOWAWAY51_OS 246 0.0003 (1/2989) 0 * * Os_TE_568382 Chr2 31303373 31303372 - TELIA 141 0.0007 (2/2950) 0 * * Os_TE_568341 Chr2 31286813 31286953 - TELIA 141 0.3415 (1013/2966) 1 Intact * Os_TE_568339 Chr2 31283250 31283251 + TOS17LTR 138 0.0013 (4/2996) 0 * Os_TE_568338 Os_TE_568338 Chr2 31283246 31283245 - TOS17LTR 138 0.0013 (4/2997) 0 * Os_TE_568339 Os_TE_568337 Chr2 31281205 31281206 - SC-3_LTR 5748 0.0003 (1/2995) 0 * Os_TE_568336 Os_TE_568336 Chr2 31281201 31281200 + ORSiTERTOOT00296 5553 0.0003 (1/2995) 0 * Os_TE_568337 Os_TE_568329 Chr2 31275670 31275671 - ORSgTEMT02400246 177 0.0538 (158/2935) 0 * * Os_TE_568323 Chr2 31273230 31273229 + ORSgTEMT01601591 242 0.0007 (2/2992) 0 * * Os_TE_568312 Chr2 31270779 31270780 + GYPSY-A_LTR 8951 0.0005 (1/1991) -1 * Os_TE_568311 Os_TE_568311 Chr2 31270775 31270774 - SZ-40LTR 2465 0.0005 (1/2069) -1 * Os_TE_568312 Os_TE_568308 Chr2 31270478 31270479 + INDITTO 263 0.6633 (1927/2905) 0 * * Os_TE_568303 Chr2 31267446 31267447 - COPI2_LTR 4733 0.0003 (1/2997) 0 * Os_TE_568302 Os_TE_568302 Chr2 31267442 31267441 + COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_568303 Os_TE_568293 Chr2 31264710 31264711 + COPI2_LTR 4733 0.0007 (2/2987) 0 * Os_TE_568292 Os_TE_568292 Chr2 31264706 31264705 - COPI2_LTR 4733 0.0003 (1/2988) 0 * Os_TE_568293 Os_TE_568290 Chr2 31263838 31263839 - ORSiTERTOOT00332 5395 0.0003 (1/2998) 0 * Os_TE_568289 Os_TE_568289 Chr2 31263834 31263833 + ORSiTERTOOT00332 5395 0.0003 (1/2997) 0 * Os_TE_568290 Os_TE_568287 Chr2 31262867 31262868 + RETRO1_LTR 8314 0.0003 (1/2962) 0 * Os_TE_568286 Os_TE_568286 Chr2 31262863 31262862 - RETRO2A_LTR 12895 0.0003 (1/2971) 0 * Os_TE_568287 Os_TE_568257 Chr2 31257146 31257147 - NDNA1TNA_OS 334 0.0017 (5/2987) 0 * * Os_TE_568256 Chr2 31257103 31257104 - ORSgTETNOOT00591 258 0.0966 (289/2993) 0 * Os_TE_568255 Os_TE_568255 Chr2 31257100 31257099 + ORSgTETNOOT01686 252 0.0966 (289/2993) 0 * Os_TE_568256 Os_TE_568243 Chr2 31251099 31251100 - SC-3_LTR 5748 0.0003 (1/2996) 0 * Os_TE_568242 Os_TE_568242 Chr2 31251095 31251094 + ORSiTERTOOT00296 5553 0.0003 (1/2996) 0 * Os_TE_568243 Os_TE_568239 Chr2 31245420 31241644 - RETROSAT4_LTR 13504 0.3401 (1010/2970) 1 Solo_LTR Os_TE_568236 Os_TE_568236 Chr2 31241644 31245420 + RETROSAT4_LTR 13504 0.3408 (1013/2972) 1 Solo_LTR Os_TE_568239 Os_TE_568224 Chr2 31238785 31238786 + RETROSAT2LTR 12796 0.0558 (166/2977) 0 * Os_TE_568223 Os_TE_568223 Chr2 31238783 31238782 - RETROSAT2LTR 12796 0.0599 (179/2986) 0 * Os_TE_568224 Os_TE_568219 Chr2 31236420 31236421 + ORSiTERTOOT00381 4988 0.0023 (7/2997) 0 * Os_TE_568218 Os_TE_568218 Chr2 31236416 31236415 - SC-8_LTR 4951 0.0023 (7/2996) 0 * Os_TE_568219 Os_TE_568208 Chr2 31231052 31231051 + TNR2A 152 0.0023 (7/2989) 0 * * Os_TE_568193 Chr2 31224851 31224850 - STOWAWAY51_OS 246 0.0003 (1/2990) 0 * Os_TE_568192 Os_TE_568192 Chr2 31224845 31224846 + STOWAWAY51_OS 246 0.0003 (1/2993) 0 * Os_TE_568193 Os_TE_568187 Chr2 31224215 31224216 - ORSiTETNOOT00200 3563 0.0017 (5/2988) 0 * Os_TE_568186 Os_TE_568186 Chr2 31224208 31224207 + TWIF 586 0.0020 (6/2988) 0 * Os_TE_568187 Os_TE_568177 Chr2 31222948 31222947 + JOUZHENA 607 0.6571 (1932/2940) 0.08 * * Os_TE_568176 Chr2 31222153 31222154 + ORSiTERTOOT00226 792 0.0003 (1/2994) 0 * Os_TE_568175 Os_TE_568175 Chr2 31222149 31222148 - CRM-LTR_OS 7749 0.0003 (1/2995) 0 * Os_TE_568176 Os_TE_568174 Chr2 31220268 31220269 + TWIFB1 3737 0.0003 (1/2940) 0 * * Os_TE_568109 Chr2 31207537 31207538 - ORSiTERTOOT00074 4935 0.0013 (4/2995) 0 * * Os_TE_568099 Chr2 31205505 31205506 + COPI2_LTR 4733 0.0498 (149/2993) 0 * Os_TE_568098 Os_TE_568098 Chr2 31205501 31205500 - COPI2_LTR 4733 0.0527 (158/2999) 0 * Os_TE_568099 Os_TE_568088 Chr2 31194085 31194084 + ORSgTEMT00101674 340 0.5816 (1735/2983) 0 * Os_TE_568087 Os_TE_568087 Chr2 31194077 31194078 + NDNA1TNA_OS 334 0.5850 (1752/2995) 0 * Os_TE_568088 Os_TE_568029 Chr2 31165812 31165813 + INDITTO 263 0.0517 (155/2996) 0 * Os_TE_568028 Os_TE_568028 Chr2 31165810 31165809 - INDITTO 263 0.0524 (157/2997) 0 * Os_TE_568029 Os_TE_568023 Chr2 31162383 31162384 - INDITTO 263 0.0007 (2/2992) 0 * Os_TE_568022 Os_TE_568022 Chr2 31162381 31162380 + INDITTO 263 0.0007 (2/2991) 0 * Os_TE_568023 Os_TE_567991 Chr2 31144603 31144602 + STOWAWAY51_OS 246 0.0280 (84/2998) 0 * Os_TE_567990 Os_TE_567990 Chr2 31144597 31144598 - STOWAWAY51_OS 246 0.0284 (85/2996) 0 * Os_TE_567991 Os_TE_567988 Chr2 31144312 31144313 - NDNA1TNA_OS 334 0.0023 (7/2992) 0 * Os_TE_567987 Os_TE_567987 Chr2 31144310 31144309 - NDNA1TNA_OS 334 0.0020 (6/2991) 0 * Os_TE_567988 Os_TE_567970 Chr2 31134944 31134943 + GYPSY-A_LTR 8951 0.0023 (7/2997) 0 * * Os_TE_567967 Chr2 31132530 31132531 - RIREX_LTR 8828 0.0013 (4/2969) 0 * * Os_TE_567929 Chr2 31113739 31113738 + DS-RICE3N 525 0.0021 (6/2887) 0 * * Os_TE_567928 Chr2 31112391 31112392 - COPIA2-LTR_OS 6433 0.0003 (1/2983) 0 * Os_TE_567927 Os_TE_567927 Chr2 31112387 31112386 + COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_567928 Os_TE_567916 Chr2 31105226 31105227 - COPI2_LTR 4733 0.0404 (118/2921) 0 * Os_TE_567915 Os_TE_567915 Chr2 31105222 31105221 + COPI2_LTR 4733 0.0393 (115/2927) 0 * Os_TE_567916 Os_TE_567913 Chr2 31102585 31102586 + ORSgTETNOOT01834 251 0.0047 (14/2998) 0 * Os_TE_567912 Os_TE_567912 Chr2 31102581 31102580 + ORSgTETNOOT01686 252 0.0047 (14/2997) 0 * Os_TE_567913 Os_TE_567904 Chr2 31101263 31101264 + TWIFB1 3737 0.0004 (1/2835) 0 * * Os_TE_567901 Chr2 31097250 31097251 + SC-8_LTR 4951 0.0007 (2/2988) 0 * Os_TE_567900 Os_TE_567900 Chr2 31097246 31097245 - SC-8_LTR 4951 0.0007 (2/2988) 0 * Os_TE_567901 Os_TE_567886 Chr2 31094137 31094138 + COPI2_LTR 4733 0.0007 (2/2976) 0 * Os_TE_567885 Os_TE_567885 Chr2 31094133 31094132 - COPI2_LTR 4733 0.0007 (2/2973) 0 * Os_TE_567886 Os_TE_567825 Chr2 31054169 31054503 + NDNA1TNA_OS 334 0.5456 (1628/2984) 1 Intact * Os_TE_567796 Chr2 31041797 31041798 + TELIA 141 0.0003 (1/2948) 0 * Os_TE_567795 Os_TE_567795 Chr2 31041789 31041788 - TELIA 141 0.0003 (1/2938) 0 * Os_TE_567796 Os_TE_567740 Chr2 31016776 31016777 + SC-8_LTR 4951 0.0003 (1/2972) 0 * Os_TE_567739 Os_TE_567739 Chr2 31016772 31016771 - SC-8_LTR 4951 0.0003 (1/2970) 0 * Os_TE_567740 Os_TE_567735 Chr2 31015229 31015228 + OLO24B 335 0.0003 (1/2900) 0 * * Os_TE_567721 Chr2 31011804 31011805 + STOWAWAY51_OS 246 0.0003 (1/2982) 0 * * Os_TE_567719 Chr2 31005960 31005961 + SC-8_LTR 4951 0.0007 (2/2992) 0 * Os_TE_567718 Os_TE_567718 Chr2 31005956 31005955 - SC-8_LTR 4951 0.0007 (2/2994) 0 * Os_TE_567719 Os_TE_567691 Chr2 30984107 30984108 - COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * * Os_TE_567676 Chr2 30973923 30973924 + NDNA1TNA_OS 334 0.0117 (35/2994) 0 * Os_TE_567675 Os_TE_567675 Chr2 30973921 30973920 - NDNA1TNA_OS 334 0.0110 (33/2995) 0 * Os_TE_567676 Os_TE_567672 Chr2 30971512 30971513 + MPING 430 0.0023 (7/2985) 0 * Os_TE_567671 Os_TE_567671 Chr2 30971510 30971509 - MPING 430 0.0027 (8/2982) 0 * Os_TE_567672 Os_TE_567642 Chr2 30960627 30960628 - SC-3_LTR 5748 0.0003 (1/2985) 0 * * Os_TE_567640 Chr2 30956834 30956833 + STOWAWAY51_OS 246 0.0013 (4/2998) 0 * Os_TE_567639 Os_TE_567639 Chr2 30956828 30956829 + ORSgTEMT01601591 242 0.0013 (4/2999) 0 * Os_TE_567640 Os_TE_567630 Chr2 30953830 30953831 + ORSgTEMT01601591 242 0.0003 (1/2998) 0 * * Os_TE_567610 Chr2 30949569 30949568 + STOWAWAY51_OS 246 0.0021 (6/2921) 0 * Os_TE_567609 Os_TE_567609 Chr2 30949563 30949564 - STOWAWAY51_OS 246 0.0037 (6/1642) 0 * Os_TE_567610 Os_TE_567589 Chr2 30937400 30937401 - CASTAWAY 364 0.0017 (5/2998) 0 * Os_TE_567588 Os_TE_567588 Chr2 30937397 30937396 - ORSgTEMT00600304 361 0.0017 (5/2996) 0 * Os_TE_567589 Os_TE_567580 Chr2 30936237 30936236 - ORSgTEMT01601432 239 0.0011 (3/2801) 0 * * Os_TE_567572 Chr2 30934362 30934361 - STOWAWAY51_OS 246 0.0007 (2/2845) 0 * * Os_TE_567570 Chr2 30934331 30934332 - ORSiTETNOOT00134 607 0.0003 (1/2866) 0 * Os_TE_567569 Os_TE_567569 Chr2 30934324 30934323 + TWIF 586 0.0004 (1/2852) 0 * Os_TE_567570 Os_TE_567566 Chr2 30928652 30928653 + TWIF 586 0.0003 (1/2986) 0 * Os_TE_567565 Os_TE_567565 Chr2 30928645 30928644 - ORSiTETNOOT00216 3569 0.0010 (3/2989) 0 * Os_TE_567566 Os_TE_567542 Chr2 30917840 30917841 + HARB-1_OS 5166 0.0174 (52/2997) 0 * Os_TE_567541 Os_TE_567541 Chr2 30917838 30917837 - HARB-1_OS 5166 0.0170 (51/2998) 0 * Os_TE_567542 Os_TE_567534 Chr2 30912998 30912999 + INDITTO 263 0.0033 (10/2989) 0 * Os_TE_567533 Os_TE_567533 Chr2 30912996 30912995 - INDITTO 263 0.0030 (9/2988) 0 * Os_TE_567534 Os_TE_567496 Chr2 30901396 30901397 + ORSgTEMT04800085 366 0.0004 (1/2807) 0 * * Os_TE_567491 Chr2 30893355 30893354 - HARB-1_OS 5166 0.0003 (1/2940) 0 * * Os_TE_567489 Chr2 30890836 30890837 + MPING 430 0.0003 (1/2981) 0 * Os_TE_567488 Os_TE_567488 Chr2 30890834 30890833 - MPING 430 0.0003 (1/2965) 0 * Os_TE_567489 Os_TE_567447 Chr2 30870062 30870063 + ORSiTERTOOT00296 5553 0.0003 (1/2993) 0 * Os_TE_567446 Os_TE_567446 Chr2 30870058 30870057 - SC-3_LTR 5748 0.0003 (1/2994) 0 * Os_TE_567447 Os_TE_567436 Chr2 30858516 30858517 + AMYLTP 383 0.0014 (4/2911) 0 * * Os_TE_567417 Chr2 30841080 30841079 + NDNA1TNA_OS 334 0.0007 (2/2993) 0 * * Os_TE_567415 Chr2 30840078 30840079 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_567414 Os_TE_567414 Chr2 30840074 30840073 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_567415 Os_TE_567410 Chr2 30838201 30838200 + INDITTO 263 0.0111 (33/2983) 0 * * Os_TE_567391 Chr2 30831652 30831653 - SZ-55_LTR 10318 0.0003 (1/2998) 0 * Os_TE_567390 Os_TE_567390 Chr2 30831648 30831647 + SZ-55_LTR 10318 0.0003 (1/2996) 0 * Os_TE_567391 Os_TE_567359 Chr2 30818507 30818508 + MPING 430 0.0007 (2/3000) 0 * Os_TE_567358 Os_TE_567358 Chr2 30818505 30818504 - MPING 430 0.0007 (2/3000) 0 * Os_TE_567359 Os_TE_567348 Chr2 30815525 30815526 - TRUNCATOR2_LTR 2904 0.0091 (27/2978) 0 * Os_TE_567347 Os_TE_567347 Chr2 30815521 30815520 + ORSiCMCM00100019 2717 0.0081 (24/2980) 0 * Os_TE_567348 Os_TE_567346 Chr2 30815217 30815218 - RIREX_LTR 8828 0.0030 (9/2980) 0 * * Os_TE_567340 Chr2 30813226 30813225 + NDNA1TNA_OS 334 0.4072 (1211/2974) 0 * Os_TE_567339 Os_TE_567339 Chr2 30813207 30813208 - ORSgTEMT00101539 160 0.4020 (1183/2943) 0 * Os_TE_567340 Os_TE_567333 Chr2 30811332 30811333 + ORSgTETNOOT02316 263 0.0034 (10/2977) 0 * Os_TE_567332 Os_TE_567332 Chr2 30811330 30811329 + ORSgTETNOOT00221 261 0.0034 (10/2982) 0 * Os_TE_567333 Os_TE_567319 Chr2 30809002 30809003 + Cassandra_OS-LTR 764 0.4205 (1243/2956) 0 * * Os_TE_567311 Chr2 30806023 30806024 + COPIA2-LTR_OS 6433 0.0010 (3/2982) 0 * Os_TE_567310 Os_TE_567310 Chr2 30806019 30806018 - COPIA2-LTR_OS 6433 0.0010 (3/2983) 0 * Os_TE_567311 Os_TE_567307 Chr2 30804805 30804806 + COPI2_LTR 4733 0.3899 (1149/2947) 0 * * Os_TE_567303 Chr2 30804560 30804559 + ORSiTERTOOT00226 792 0.0091 (27/2959) 0 * * Os_TE_567302 Chr2 30803004 30803005 + COPI2_LTR 4733 0.0003 (1/2985) 0 * Os_TE_567301 Os_TE_567301 Chr2 30803000 30802999 - COPI2_LTR 4733 0.0003 (1/2984) 0 * Os_TE_567302 Os_TE_567296 Chr2 30800703 30800704 + DITTO3 260 0.0003 (1/2917) 0 * * Os_TE_567283 Chr2 30797528 30797529 - COPI2_LTR 4733 0.0003 (1/2967) 0 * Os_TE_567282 Os_TE_567282 Chr2 30797524 30797523 + COPI2_LTR 4733 0.0003 (1/2970) 0 * Os_TE_567283 Os_TE_567260 Chr2 30790112 30790446 - ORSgTEMT00100582 334 0.3509 (1050/2992) 1 Intact * Os_TE_567243 Chr2 30785114 30785115 - COPI2_LTR 4733 0.0007 (2/2993) 0 * Os_TE_567242 Os_TE_567242 Chr2 30785110 30785109 + COPI2_LTR 4733 0.0007 (2/2994) 0 * Os_TE_567243 Os_TE_567221 Chr2 30780928 30780929 + RETRO2_LTR 12874 0.0087 (26/2996) 0 * * Os_TE_567210 Chr2 30773754 30773753 + DITAILA 257 0.0003 (1/2995) 0 * Os_TE_567209 Os_TE_567209 Chr2 30773753 30773754 - DITAIL 271 0.0003 (1/2996) 0 * Os_TE_567210 Os_TE_567184 Chr2 30763944 30763945 - ORSiTERTOOT00402 2660 0.0003 (1/2984) 0 * Os_TE_567183 Os_TE_567183 Chr2 30763940 30763939 + ORSiTERTOOT00402 2660 0.0003 (1/2992) 0 * Os_TE_567184 Os_TE_567172 Chr2 30749336 30749337 - ORSgTEMT01601432 239 0.0004 (1/2497) 0 * * Os_TE_567150 Chr2 30730816 30730817 - SC-8_LTR 4951 0.0003 (1/2996) 0 * Os_TE_567149 Os_TE_567149 Chr2 30730812 30730811 + SC-8_LTR 4951 0.0003 (1/2996) 0 * Os_TE_567150 Os_TE_567144 Chr2 30730017 30730018 - RETROSAT2LTR 12796 0.0859 (241/2807) 0 * * Os_TE_567140 Chr2 30727999 30728000 + NDNA1TNA_OS 334 0.1128 (308/2731) 0 * Os_TE_567139 Os_TE_567139 Chr2 30727998 30727997 - NDNA1TNA_OS 334 0.1140 (320/2806) 0 * Os_TE_567140 Os_TE_567119 Chr2 30719737 30719738 - MPING 430 0.0003 (1/2994) 0 * Os_TE_567118 Os_TE_567118 Chr2 30719735 30719734 + MPING 430 0.0003 (1/2997) 0 * Os_TE_567119 Os_TE_567099 Chr2 30716290 30716291 - RIREX_LTR 8828 0.0003 (1/2988) 0 * * Os_TE_567097 Chr2 30714987 30714988 - HARB-1_OS 5166 0.0003 (1/2980) 0 * * Os_TE_567089 Chr2 30712559 30712560 + INDITTO 263 0.0010 (3/2998) 0 * Os_TE_567088 Os_TE_567088 Chr2 30712557 30712556 - INDITTO 263 0.0010 (3/2997) 0 * Os_TE_567089 Os_TE_567080 Chr2 30709374 30705656 + TWIFB1 3737 0.2961 (828/2796) 1 Intact * Os_TE_567078 Chr2 30699677 30699678 - ORSiTETNOOT00108 1348 0.0007 (2/2997) 0 * * Os_TE_567076 Chr2 30698257 30698258 - SC-8_LTR 4951 0.0003 (1/2984) 0 * Os_TE_567075 Os_TE_567075 Chr2 30698253 30698252 + SC-8_LTR 4951 0.0003 (1/2987) 0 * Os_TE_567076 Os_TE_567071 Chr2 30695040 30695041 - F770 284 0.4661 (1370/2939) 0 * Os_TE_567070 Os_TE_567070 Chr2 30695038 30695037 + F770 284 0.4579 (1338/2922) 0 * Os_TE_567071 Os_TE_567052 Chr2 30686887 30686888 - GYPSY-A_LTR 8951 0.0010 (3/2987) 0 * Os_TE_567051 Os_TE_567051 Chr2 30686883 30686882 + GYPSY-A_LTR 8951 0.0010 (3/2989) 0 * Os_TE_567052 Os_TE_567045 Chr2 30681903 30681904 - COPI2_LTR 4733 0.0023 (7/2989) 0 * Os_TE_567044 Os_TE_567044 Chr2 30681899 30681898 + COPI2_LTR 4733 0.0023 (7/2986) 0 * Os_TE_567045 Os_TE_567019 Chr2 30672324 30672325 - MPING 430 0.0003 (1/2996) 0 * Os_TE_567018 Os_TE_567018 Chr2 30672322 30672321 + MPING 430 0.0003 (1/2998) 0 * Os_TE_567019 Os_TE_567012 Chr2 30668480 30668479 + RETRO2_LTR 12874 0.0928 (261/2813) 0 * * Os_TE_566993 Chr2 30661845 30661846 - COPIA2-LTR_OS 6433 0.0004 (1/2617) 0 * Os_TE_566992 Os_TE_566992 Chr2 30661841 30661840 + COPIA2-LTR_OS 6433 0.0005 (1/2021) 0 * Os_TE_566993 Os_TE_566981 Chr2 30657533 30657532 - TYPEM 227 0.1082 (324/2994) 0.04 * Os_TE_566980 Os_TE_566980 Chr2 30657532 30657533 - ORSgTEMT02400246 177 0.1068 (320/2996) 0 * Os_TE_566981 Os_TE_566979 Chr2 30657141 30657142 - AMYLTP 383 0.1051 (315/2996) 0 * * Os_TE_566973 Chr2 30650166 30650167 + RETROSAT2LTR 12796 0.0005 (1/1975) 0 * * Os_TE_566949 Chr2 30639068 30638723 + NDNA2TNA_OS 346 0.3842 (1131/2944) 1 Intact * Os_TE_566945 Chr2 30638484 30638677 - ORSgTEMT02000047 197 0.3853 (1136/2948) 1 Intact * Os_TE_566934 Chr2 30636954 30636955 + ORSiTEMT01000002 221 0.0004 (1/2574) 0 * * Os_TE_566921 Chr2 30628018 30628019 - ORSiTERTOOT00332 5395 0.0003 (1/2976) 0 * Os_TE_566920 Os_TE_566920 Chr2 30628014 30628013 + ORSiTERTOOT00332 5395 0.0003 (1/2974) 0 * Os_TE_566921 Os_TE_566916 Chr2 30625498 30625499 - SZ-22_LTR 4403 0.0003 (1/2997) 0 * Os_TE_566915 Os_TE_566915 Chr2 30625494 30625493 + ORSiTERTOOT00034 791 0.0003 (1/2996) 0 * Os_TE_566916 Os_TE_566901 Chr2 30623735 30623734 - RETROSAT4_LTR 13504 0.0003 (1/2964) 0 * * Os_TE_566881 Chr2 30617590 30617591 - INDITTO 263 0.0027 (8/2978) 0 * * Os_TE_566859 Chr2 30604389 30604390 - DITAIL 271 0.0017 (5/2996) 0 * * Os_TE_566858 Chr2 30604305 30604304 + NDNA1TNA_OS 334 0.0017 (5/2997) 0 * Os_TE_566857 Os_TE_566857 Chr2 30604300 30604301 - ORSgTEMT02900061 318 0.0017 (5/2998) 0 * Os_TE_566858 Os_TE_566825 Chr2 30592660 30592661 + INDITTO 263 0.1677 (501/2987) 0 * Os_TE_566824 Os_TE_566824 Chr2 30592658 30592657 - INDITTO 263 0.1698 (508/2991) 0 * Os_TE_566825 Os_TE_566823 Chr2 30592483 30586964 - RETRO2_LTR 12874 0.3913 (1165/2977) 1 Intact * Os_TE_566795 Chr2 30578358 30578357 + ORSgTEMT01601591 242 0.0399 (119/2985) 0 * Os_TE_566793 Os_TE_566793 Chr2 30578349 30578350 + STOWAWAY51_OS 246 0.0405 (121/2988) 0 * Os_TE_566795 Os_TE_566775 Chr2 30573187 30573188 - MPING 430 0.0003 (1/2994) 0 * Os_TE_566774 Os_TE_566774 Chr2 30573185 30573184 + MPING 430 0.0003 (1/2992) 0 * Os_TE_566775 Os_TE_566771 Chr2 30572397 30572398 + ORSgTETNOOT01686 252 0.0003 (1/2997) 0 * Os_TE_566770 Os_TE_566770 Chr2 30572393 30572392 + ORSgTETNOOT01531 255 0.0003 (1/2998) 0 * Os_TE_566771 Os_TE_566734 Chr2 30557078 30557079 - COPIA2-LTR_OS 6433 0.0007 (2/2899) 0 * * Os_TE_566726 Chr2 30549287 30549288 - MERMITE18E 1528 0.0003 (1/2979) 0 * * Os_TE_566716 Chr2 30538734 30538733 + STOWAWAY44_OS 240 0.0003 (1/2994) 0 * Os_TE_566715 Os_TE_566715 Chr2 30538731 30538732 - STOWAWAY44_OS 240 0.0003 (1/2997) 0 * Os_TE_566716 Os_TE_566648 Chr2 30501953 30501954 + ORSgTETNOOT01834 251 0.2561 (750/2929) 0 * * Os_TE_566641 Chr2 30499044 30499043 - TRUNCATOR 2918 0.3778 (1102/2917) 0 * Os_TE_566640 Os_TE_566640 Chr2 30499043 30499044 + TRUNCATOR 2918 0.3958 (1174/2966) 0 * Os_TE_566641 Os_TE_566633 Chr2 30497366 30497367 + ORSiTERTOOT00222 589 0.0017 (5/2973) 0 * * Os_TE_566624 Chr2 30494017 30494016 + ORSgTETNOOT00032 218 0.0017 (5/2993) 0 * * Os_TE_566623 Chr2 30493369 30493370 - RIRE3A_LTR 10580 0.0011 (3/2688) 0 * * Os_TE_566582 Chr2 30477907 30477906 + COPI2_LTR 4733 0.0003 (1/2944) 0 * * Os_TE_566581 Chr2 30477845 30477846 - OSLINE1-2 7128 0.0007 (2/2946) 0 * * Os_TE_566577 Chr2 30471642 30471643 + RIREX_LTR 8828 0.1736 (517/2978) 0 * Os_TE_566576 Os_TE_566576 Chr2 30471638 30471637 - RIREX_LTR 8828 0.1755 (523/2980) 0 * Os_TE_566577 Os_TE_566575 Chr2 30471331 30471332 - RETRO2_LTR 12874 0.0048 (14/2924) 0 * Os_TE_566574 Os_TE_566574 Chr2 30471327 30471326 + RETRO2_LTR 12874 0.0058 (17/2928) 0 * Os_TE_566575 Os_TE_566557 Chr2 30468214 30468215 - MUDRN3_OS 903 0.4034 (1198/2970) 0 * Os_TE_566556 Os_TE_566556 Chr2 30468206 30468205 + MUDRN2_OS 756 0.4104 (1223/2980) 0 * Os_TE_566557 Os_TE_566555 Chr2 30468068 30468069 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_566554 Os_TE_566554 Chr2 30468064 30468063 + COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_566555 Os_TE_566550 Chr2 30465481 30465480 + ORSgTETNOOT01834 251 0.0011 (1/870) 0 * Os_TE_566549 Os_TE_566549 Chr2 30465475 30465476 + ORSgTETNOOT01998 254 0.0198 (58/2923) 0 * Os_TE_566550 Os_TE_566537 Chr2 30464208 30464209 - ORSgTEMT00700002 381 0.0007 (2/2933) 0 * * Os_TE_566529 Chr2 30457358 30457359 - RIREX_LTR 8828 0.0003 (1/2970) 0 * Os_TE_566528 Os_TE_566528 Chr2 30457354 30457353 + RIREX_LTR 8828 0.0003 (1/2980) 0 * Os_TE_566529 Os_TE_566508 Chr2 30449599 30449600 - RIREX_LTR 8828 0.0003 (1/2979) 0 * * Os_TE_566486 Chr2 30442236 30442237 - RETRO1_LTR 8314 0.2497 (747/2992) 0 * * Os_TE_566481 Chr2 30439821 30439822 + ORSiTERTOOT00296 5553 0.0003 (1/2994) 0 * * Os_TE_566471 Chr2 30430381 30430382 + ORSiTERTOOT00296 5553 0.0003 (1/2996) 0 * Os_TE_566470 Os_TE_566470 Chr2 30430377 30430376 - SC-3_LTR 5748 0.0003 (1/2995) 0 * Os_TE_566471 Os_TE_566469 Chr2 30427655 30427656 + ORSgTETNOOT00908 242 0.0007 (2/2991) 0 * * Os_TE_566446 Chr2 30418363 30418364 + F770 284 0.0003 (1/2994) 0 * Os_TE_566445 Os_TE_566445 Chr2 30418361 30418360 - F770 284 0.0003 (1/2991) 0 * Os_TE_566446 Os_TE_566441 Chr2 30417479 30417480 + TELIA 141 0.0013 (4/2989) 0 * Os_TE_566440 Os_TE_566440 Chr2 30417471 30417470 - TELIA 141 0.0013 (4/2988) 0 * Os_TE_566441 Os_TE_566426 Chr2 30413014 30413013 - MPING 430 0.0003 (1/2992) 0 * * Os_TE_566379 Chr2 30398803 30398804 + STOWAWAY49_OS 241 0.6628 (1985/2995) 0 * * Os_TE_566372 Chr2 30392705 30392706 - STOWAWAY51_OS 246 0.0016 (3/1935) 0 * Os_TE_566371 Os_TE_566371 Chr2 30392688 30392687 + NDNA1TNA_OS 334 0.3219 (907/2818) 0 * Os_TE_566372 Os_TE_566370 Chr2 30392687 30392688 + ORSgTEMT00101674 340 0.3167 (896/2829) 0 * * Os_TE_566365 Chr2 30392052 30392053 - ORSgTEMT00600524 364 0.6614 (1969/2977) 0 * Os_TE_566364 Os_TE_566364 Chr2 30392050 30392049 + ORSgTEMT00600272 361 0.6584 (1939/2945) 0 * Os_TE_566365 Os_TE_566363 Chr2 30390327 30390328 + F569 228 0.0080 (24/2990) 0 * Os_TE_566362 Os_TE_566362 Chr2 30390324 30390323 - F569 228 0.0084 (25/2989) 0 * Os_TE_566363 Os_TE_566356 Chr2 30385568 30385567 + STOWAWAY51_OS 246 0.0003 (1/2948) 0 * Os_TE_566355 Os_TE_566355 Chr2 30385562 30385563 - STOWAWAY51_OS 246 0.0003 (1/2965) 0 * Os_TE_566356 Os_TE_566337 Chr2 30380335 30380336 - GYPSY-A_LTR 8951 0.0003 (1/2998) 0 * Os_TE_566336 Os_TE_566336 Chr2 30380331 30380330 + GYPSY-A_LTR 8951 0.0003 (1/2997) 0 * Os_TE_566337 Os_TE_566330 Chr2 30378930 30378929 - COPI2_LTR 4733 0.0017 (5/2943) 0 * * Os_TE_566303 Chr2 30371481 30371482 + RETRO2_LTR 12874 0.3102 (877/2827) 0 * * Os_TE_566290 Chr2 30364726 30364727 - RETROSAT2LTR 12796 0.0010 (2/2095) 0 * * Os_TE_566282 Chr2 30360421 30360420 - RIREX_LTR 8828 0.0004 (1/2421) 0 * * Os_TE_566273 Chr2 30355807 30355808 + TWIF 586 0.0003 (1/2983) 0 * Os_TE_566272 Os_TE_566272 Chr2 30355800 30355799 - ORSiTETNOOT00134 607 0.0003 (1/2987) 0 * Os_TE_566273 Os_TE_566263 Chr2 30346827 30346826 + SC-4_LTR 5218 0.0003 (1/2991) 0 * * Os_TE_566260 Chr2 30344952 30344951 + OLO24 345 0.0003 (1/2977) 0 * * Os_TE_566255 Chr2 30344523 30344524 + SZ-9LTR 965 0.0467 (140/2995) 0 * Os_TE_566254 Os_TE_566254 Chr2 30344519 30344518 - SZ-9LTR 965 0.0461 (138/2995) 0 * Os_TE_566255 Os_TE_566247 Chr2 30341629 30341630 - RIRE5-LTR_OS 6427 0.0007 (2/2995) 0 * Os_TE_566246 Os_TE_566246 Chr2 30341624 30341623 + RIRE5-LTR_OS 6427 0.0003 (1/2993) 0 * Os_TE_566247 Os_TE_566245 Chr2 30340985 30340986 - ORSgTEMT01601208 238 0.0003 (1/2990) 0 * * Os_TE_566238 Chr2 30338548 30338547 - MuDR4_OS 7610 0.0007 (2/2990) 0 * * Os_TE_566231 Chr2 30336236 30336237 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_566230 Os_TE_566230 Chr2 30336232 30336231 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_566231 Os_TE_566225 Chr2 30334821 30334822 - RETROSAT2LTR 12796 0.0070 (21/2986) 0 * Os_TE_566224 Os_TE_566224 Chr2 30334819 30334818 + RETROSAT2LTR 12796 0.0064 (19/2982) 0 * Os_TE_566225 Os_TE_566221 Chr2 30334484 30334485 + FOCUS 257 0.0007 (2/2983) 0 * Os_TE_566220 Os_TE_566220 Chr2 30334482 30334481 - FOCUS 257 0.0003 (1/2988) 0 * Os_TE_566221 Os_TE_566199 Chr2 30324485 30324484 + ORSiTERTOOT00296 5553 0.0003 (1/2998) 0 * * Os_TE_566192 Chr2 30322173 30322172 + TOS17LTR 138 0.5017 (1498/2986) 0 * * Os_TE_566186 Chr2 30320326 30320325 + STOWAWAY51_OS 246 0.0003 (1/2993) 0 * Os_TE_566185 Os_TE_566185 Chr2 30320320 30320321 + ORSgTEMT01601591 242 0.0003 (1/2989) 0 * Os_TE_566186 Os_TE_566176 Chr2 30311770 30311771 + RETRO2_LTR 12874 0.0512 (153/2987) 0 * Os_TE_566175 Os_TE_566175 Chr2 30311766 30311765 - RETRO2_LTR 12874 0.0519 (155/2985) 0 * Os_TE_566176 Os_TE_566108 Chr2 30284290 30284291 - ORSgTEMT02400179 221 0.0007 (2/2991) 0 * Os_TE_566107 Os_TE_566107 Chr2 30284289 30284288 - TYPEM 227 0.0007 (2/2989) 0 * Os_TE_566108 Os_TE_566091 Chr2 30275972 30274397 + DS-RICE4N 715 0.0588 (176/2991) 1 Intact Os_TE_566088 Os_TE_566088 Chr2 30274404 30275948 + ORSiTETN00100011 676 0.7398 (182/246) 1 Intact Os_TE_566091 Os_TE_566065 Chr2 30259333 30239866 + RIREX_LTR 8828 0.0649 (189/2914) 1 Intact Os_TE_566062 Os_TE_566062 Chr2 30239866 30259333 - RIREX_LTR 8828 0.0628 (182/2898) 1 Intact Os_TE_566065 Os_TE_566055 Chr2 30238800 30238801 + OSTE33 1012 0.0729 (218/2991) 0 * Os_TE_566054 Os_TE_566054 Chr2 30238791 30238790 + OSTE33 1012 0.0710 (212/2987) 0 * Os_TE_566055 Os_TE_566042 Chr2 30230813 30230814 - INDITTO 263 0.0007 (2/2999) 0 * Os_TE_566041 Os_TE_566041 Chr2 30230811 30230810 + INDITTO 263 0.0007 (2/2997) 0 * Os_TE_566042 Os_TE_566027 Chr2 30219759 30219760 - SZ-22_LTR 4403 0.0003 (1/2995) 0 * Os_TE_566026 Os_TE_566026 Chr2 30219755 30219754 + ORSiTERTOOT00226 792 0.0003 (1/2989) 0 * Os_TE_566027 Os_TE_566007 Chr2 30213709 30213710 + RETRO2A_LTR 12895 0.0003 (1/2939) 0 * * Os_TE_566005 Chr2 30213688 30213689 - RIREX_LTR 8828 0.0007 (2/2952) 0 * Os_TE_566004 Os_TE_566004 Chr2 30213684 30213683 + RIREX_LTR 8828 0.0007 (2/2955) 0 * Os_TE_566005 Os_TE_566002 Chr2 30212760 30212761 + HARB-1_OS 5166 0.0003 (1/2998) 0 * Os_TE_566001 Os_TE_566001 Chr2 30212758 30212757 - HARB-1_OS 5166 0.0003 (1/2998) 0 * Os_TE_566002 Os_TE_565998 Chr2 30210940 30210941 + RETROSAT4_LTR 13504 0.0017 (5/2976) 0 * Os_TE_565997 Os_TE_565997 Chr2 30210936 30210935 - SZ-35LTR 3853 0.0017 (5/2982) 0 * Os_TE_565998 Os_TE_565902 Chr2 30167353 30167352 - CLOUD-6 508 0.0020 (6/2974) 0 * * Os_TE_565876 Chr2 30162232 30162231 + STOWAWAY51_OS 246 0.0020 (6/2993) 0 * Os_TE_565875 Os_TE_565875 Chr2 30162226 30162227 + ORSgTEMT01601591 242 0.0020 (6/2991) 0 * Os_TE_565876 Os_TE_565874 Chr2 30161910 30161909 - TELIA 141 0.0003 (1/2995) 0 * * Os_TE_565864 Chr2 30153261 30153262 + SC-8_LTR 4951 0.0007 (2/2994) 0 * * Os_TE_565845 Chr2 30132428 30132429 - COPI2_LTR 4733 0.0003 (1/2989) 0 * Os_TE_565844 Os_TE_565844 Chr2 30132424 30132423 + COPI2_LTR 4733 0.0007 (2/2992) 0 * Os_TE_565845 Os_TE_565843 Chr2 30132148 30121167 + SPMLIKE 10989 0.3367 (999/2967) 1 Intact Os_TE_565841 Os_TE_565841 Chr2 30121167 30132148 - ORSgTETN00200001 10994 0.3424 (1021/2982) 1 Intact Os_TE_565843 Os_TE_565833 Chr2 30118461 30118460 - ORSgTEMT02400179 221 0.0003 (1/2952) 0 * * Os_TE_565819 Chr2 30110213 30110214 - MuDR4_OS 7610 0.0020 (6/2987) 0 * Os_TE_565818 Os_TE_565818 Chr2 30110207 30110206 - MuDR4_OS 7610 0.0020 (6/2988) 0 * Os_TE_565819 Os_TE_565779 Chr2 30094980 30094981 + ORSgTEMT01601122 212 0.0037 (11/2977) 0 * * Os_TE_565775 Chr2 30092858 30092859 + COPI2_LTR 4733 0.1535 (458/2984) 0 * Os_TE_565774 Os_TE_565774 Chr2 30092854 30092853 - COPI2_LTR 4733 0.1496 (444/2968) 0 * Os_TE_565775 Os_TE_565749 Chr2 30088500 30088499 + DS-RICE3N 525 0.0007 (2/2919) 0 * * Os_TE_565744 Chr2 30087729 30087728 + COPI2_LTR 4733 0.0003 (1/2975) 0 * * Os_TE_565741 Chr2 30087158 30087159 - COPI2_LTR 4733 0.0064 (19/2991) 0 * Os_TE_565740 Os_TE_565740 Chr2 30087154 30087153 + COPI2_LTR 4733 0.0060 (18/2990) 0 * Os_TE_565741 Os_TE_565735 Chr2 30081644 30081645 + TRUNCATOR 2918 0.0023 (7/2981) 0 * * Os_TE_565721 Chr2 30075473 30075474 + ORSiTERT00400052 469 0.0004 (1/2590) 0 * * Os_TE_565717 Chr2 30071641 30071642 - SZ-64B_LTR 8424 0.0017 (5/2985) 0 * Os_TE_565716 Os_TE_565716 Chr2 30071637 30071636 + SZ-64B_LTR 8424 0.0017 (5/2984) 0 * Os_TE_565717 Os_TE_565715 Chr2 30068948 30068947 + ORSgTERT00200063 5773 0.0007 (2/2974) 0 * * Os_TE_565713 Chr2 30067685 30067686 + ORSgTETNOOT01998 254 0.0461 (137/2975) 0 * Os_TE_565712 Os_TE_565712 Chr2 30067683 30067682 + ORSgTETNOOT01834 251 0.0469 (139/2965) 0 * Os_TE_565713 Os_TE_565703 Chr2 30062044 30062045 - MPING 430 0.0003 (1/2994) 0 * Os_TE_565702 Os_TE_565702 Chr2 30062042 30062041 + MPING 430 0.0003 (1/2995) 0 * Os_TE_565703 Os_TE_565701 Chr2 30060402 30060401 + MUDRN5_OS 374 0.0003 (1/2990) 0 * * Os_TE_565691 Chr2 30059441 30059635 - ORSgTEMT02000040 196 0.3413 (1023/2997) 1 Intact * Os_TE_565690 Chr2 30058747 30058748 - SZ-62LTR 3649 0.0230 (69/2995) 0 * Os_TE_565689 Os_TE_565689 Chr2 30058743 30058742 + SZ-62LTR 3649 0.0224 (67/2993) 0 * Os_TE_565690 Os_TE_565682 Chr2 30052753 30052754 + COPIA2-LTR_OS 6433 0.0003 (1/2957) 0 * Os_TE_565681 Os_TE_565681 Chr2 30052749 30052748 - COPIA2-LTR_OS 6433 0.0003 (1/2959) 0 * Os_TE_565682 Os_TE_565660 Chr2 30046239 30046240 - RETROFIT5_LTR 4785 0.0003 (1/2988) 0 * Os_TE_565659 Os_TE_565659 Chr2 30046235 30046234 + RETROFIT5_LTR 4785 0.0003 (1/2987) 0 * Os_TE_565660 Os_TE_565600 Chr2 30005724 30005725 + SC-8_LTR 4951 0.0003 (1/2993) 0 * Os_TE_565599 Os_TE_565599 Chr2 30005720 30005719 - SC-8_LTR 4951 0.0003 (1/2994) 0 * Os_TE_565600 Os_TE_565592 Chr2 30004047 30004048 + ORSgTEMT01601591 242 0.0003 (1/2993) 0 * * Os_TE_565571 Chr2 29995432 29995433 - HARB-1_OS 5166 0.0003 (1/2968) 0 * Os_TE_565570 Os_TE_565570 Chr2 29995430 29995429 + HARB-1_OS 5166 0.0003 (1/2970) 0 * Os_TE_565571 Os_TE_565562 Chr2 29990552 29990553 + TWIF 586 0.4309 (1198/2780) 0 * Os_TE_565561 Os_TE_565561 Chr2 29990545 29990544 - ORSiTETNOOT00134 607 0.4668 (1370/2935) 0 * Os_TE_565562 Os_TE_565550 Chr2 29983603 29983604 + MPING 430 0.0027 (8/2979) 0 * * Os_TE_565544 Chr2 29982663 29982664 - SZ-22_LTR 4403 0.0184 (55/2984) 0 * Os_TE_565543 Os_TE_565543 Chr2 29982659 29982658 + ORSiTERTOOT00226 792 0.0184 (55/2983) 0 * Os_TE_565544 Os_TE_565541 Chr2 29982097 29982096 + TRUNCATOR 2918 0.4643 (1385/2983) 0 * Os_TE_565540 Os_TE_565540 Chr2 29982096 29982097 - TRUNCATOR 2918 0.4530 (1334/2945) 0 * Os_TE_565541 Os_TE_565535 Chr2 29979382 29979381 + TWIFBIG 3567 0.0117 (34/2905) 0 * * Os_TE_565510 Chr2 29960349 29960348 - ORSiTERTOOT00427 5125 0.6619 (1983/2996) 0 * * Os_TE_565509 Chr2 29959851 29959852 + ORSgTEMT00600376 329 0.0003 (1/2992) 0 * Os_TE_565508 Os_TE_565508 Chr2 29959846 29959845 + ORSgTEMT00600272 361 0.0003 (1/2989) 0 * Os_TE_565509 Os_TE_565504 Chr2 29957130 29957131 + ORSgTEMT00100531 325 0.0007 (2/2948) 0 * * Os_TE_565477 Chr2 29943241 29943240 - ORSgTEMT00901723 248 0.0017 (5/2981) 0 * * Os_TE_565475 Chr2 29942423 29942424 + RETROSAT4_LTR 13504 0.0007 (2/2979) 0 * Os_TE_565474 Os_TE_565474 Chr2 29942419 29942418 - RETROSAT4_LTR 13504 0.0007 (2/2983) 0 * Os_TE_565475 Os_TE_565441 Chr2 29921444 29921445 - TRUNCATOR2_LTR 2904 0.0004 (1/2674) 0 * * Os_TE_565433 Chr2 29920594 29920593 + SPMLIKE 10989 0.0010 (3/2973) 0 * * Os_TE_565400 Chr2 29907102 29907103 + COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * * Os_TE_565395 Chr2 29906467 29906466 - ORSgTEMT02000041 194 0.0838 (249/2970) 0 * * Os_TE_565379 Chr2 29897195 29897194 + COPIA1-LTR_OS 9292 0.0022 (6/2762) 0 * * Os_TE_565376 Chr2 29896703 29896702 + STOWAWAY51_OS 246 0.0017 (5/2929) 0 * Os_TE_565375 Os_TE_565375 Chr2 29896692 29896693 - STOWAWAY51_OS 246 0.0014 (4/2936) 0 * Os_TE_565376 Os_TE_565360 Chr2 29887326 29887327 - RETRO2_LTR 12874 0.0003 (1/2978) 0 * * Os_TE_565356 Chr2 29884768 29884767 + ORSgTETNOOT01834 251 0.0063 (19/2996) 0 * * Os_TE_565348 Chr2 29877520 29877521 - HARB-1_OS 5166 0.0003 (1/2998) 0 * Os_TE_565347 Os_TE_565347 Chr2 29877518 29877517 + HARB-1_OS 5166 0.0003 (1/2997) 0 * Os_TE_565348 Os_TE_565332 Chr2 29869272 29869273 + ORSiTERTOOT00296 5553 0.0003 (1/2996) 0 * Os_TE_565331 Os_TE_565331 Chr2 29869268 29869267 - SC-3_LTR 5748 0.0003 (1/2995) 0 * Os_TE_565332 Os_TE_565330 Chr2 29867937 29867938 - STOWAWAY51_OS 246 0.0004 (1/2804) 0 * * Os_TE_565328 Chr2 29866996 29866995 + OSTE15 1168 0.0003 (1/2993) 0 * * Os_TE_565323 Chr2 29859072 29859073 + CASTAWAY-3 314 0.0017 (5/2978) 0 * * Os_TE_565289 Chr2 29849399 29849398 + RETRO2_LTR 12874 0.0404 (120/2973) 0 * * Os_TE_565287 Chr2 29848992 29848993 - SZ-40LTR 2465 0.0003 (1/2995) 0 * Os_TE_565286 Os_TE_565286 Chr2 29848988 29848987 + SZ-40LTR 2465 0.0003 (1/2995) 0 * Os_TE_565287 Os_TE_565285 Chr2 29848408 29848407 + OSTE33 1012 0.0007 (2/2992) 0 * * Os_TE_565282 Chr2 29846742 29846741 - NDNA1TNA_OS 334 0.0003 (1/2997) 0 * Os_TE_565281 Os_TE_565281 Chr2 29846741 29846742 + NDNA1TNA_OS 334 0.0007 (2/2999) 0 * Os_TE_565282 Os_TE_565267 Chr2 29844625 29844624 - SZ-22_LTR 4403 0.0004 (1/2744) 0 * * Os_TE_565242 Chr2 29832987 29832988 - COPI2_LTR 4733 0.0003 (1/2968) 0 * Os_TE_565241 Os_TE_565241 Chr2 29832983 29832982 + COPI2_LTR 4733 0.0003 (1/2977) 0 * Os_TE_565242 Os_TE_565233 Chr2 29828555 29828556 + MPING 430 0.0023 (7/2996) 0 * Os_TE_565232 Os_TE_565232 Chr2 29828553 29828552 - MPING 430 0.0023 (7/2993) 0 * Os_TE_565233 Os_TE_565229 Chr2 29826050 29826051 - MERMITE18D 1491 0.0007 (2/2990) 0 * * Os_TE_565228 Chr2 29821067 29821068 - RIREX_LTR 8828 0.0003 (1/2988) 0 * Os_TE_565227 Os_TE_565227 Chr2 29821063 29821062 + RIREX_LTR 8828 0.0003 (1/2993) 0 * Os_TE_565228 Os_TE_565218 Chr2 29817970 29817971 + RIREX_LTR 8828 0.0003 (1/2989) 0 * Os_TE_565217 Os_TE_565217 Chr2 29817966 29817965 - RIREX_LTR 8828 0.0003 (1/2987) 0 * Os_TE_565218 Os_TE_565216 Chr2 29817558 29817557 - TYPEM 227 0.0040 (12/2988) 0 * Os_TE_565215 Os_TE_565215 Chr2 29817557 29817558 - ORSgTEMT02400246 177 0.0040 (12/2988) 0 * Os_TE_565216 Os_TE_565205 Chr2 29814906 29814694 + ORSgTEMT01601122 212 0.3295 (925/2807) 1 Intact * Os_TE_565193 Chr2 29809141 29809140 + ORSgTEMT01601122 212 0.0003 (1/2954) 0 * * Os_TE_565113 Chr2 29755351 29755352 + TWIF 586 0.0003 (1/2991) 0 * Os_TE_565112 Os_TE_565112 Chr2 29755344 29755343 - ORSiTETNOOT00134 607 0.0003 (1/2991) 0 * Os_TE_565113 Os_TE_565104 Chr2 29751595 29751596 + COPI2_LTR 4733 0.0003 (1/2987) 0 * Os_TE_565103 Os_TE_565103 Chr2 29751591 29751590 - COPI2_LTR 4733 0.0003 (1/2987) 0 * Os_TE_565104 Os_TE_565101 Chr2 29751243 29751242 + STOWAWAY51_OS 246 0.0193 (57/2948) 0 * Os_TE_565100 Os_TE_565100 Chr2 29751237 29751238 - STOWAWAY51_OS 246 0.0150 (44/2937) 0 * Os_TE_565101 Os_TE_565096 Chr2 29748383 29748384 - TRSA_OS 353 0.0004 (1/2827) -1 * * Os_TE_565084 Chr2 29737953 29737954 - COPI2_LTR 4733 0.0003 (1/2984) 0 * Os_TE_565083 Os_TE_565083 Chr2 29737949 29737948 + COPI2_LTR 4733 0.0003 (1/2982) 0 * Os_TE_565084 Os_TE_565074 Chr2 29731596 29731597 + MPING 430 0.0003 (1/2990) 0 * Os_TE_565073 Os_TE_565073 Chr2 29731594 29731593 - MPING 430 0.0003 (1/2995) 0 * Os_TE_565074 Os_TE_565053 Chr2 29723150 29723151 - STOWAWAY1_OS 149 0.0004 (1/2593) 0 * * Os_TE_565036 Chr2 29717497 29717498 + ORSiTERTOOT00226 792 0.0003 (1/2976) 0 * * Os_TE_565028 Chr2 29714215 29713251 - SZ-9LTR 965 0.3555 (1062/2987) 1 Intact Os_TE_565027 Os_TE_565027 Chr2 29713251 29714215 + SZ-9LTR 965 0.3544 (1060/2991) 1 Intact Os_TE_565028 Os_TE_565026 Chr2 29712901 29712902 - ORSgTETN00200001 10994 0.0003 (1/2993) 0 * Os_TE_565025 Os_TE_565025 Chr2 29712899 29712898 + SPMLIKE 10989 0.0007 (2/2947) 0 * Os_TE_565026 Os_TE_565022 Chr2 29711567 29711568 + COPI2_LTR 4733 0.0003 (1/2993) 0 * Os_TE_565021 Os_TE_565021 Chr2 29711563 29711562 - COPI2_LTR 4733 0.0003 (1/2993) 0 * Os_TE_565022 Os_TE_564988 Chr2 29703013 29703012 + ORSgTEMT01700513 151 0.0017 (5/2869) 0 * * Os_TE_564976 Chr2 29702262 29702263 - COPIA2-LTR_OS 6433 0.0460 (134/2914) -1 * Os_TE_564975 Os_TE_564975 Chr2 29702258 29702257 + COPIA2-LTR_OS 6433 0.0451 (132/2926) -1 * Os_TE_564976 Os_TE_564972 Chr2 29700836 29700837 + TRUNCATOR 2918 0.0493 (127/2576) -1 * Os_TE_564971 Os_TE_564971 Chr2 29700830 29700829 - ORSiTERT00200154 9386 0.0492 (124/2522) -1 * Os_TE_564972 Os_TE_564949 Chr2 29692142 29692141 + RIREX_LTR 8828 0.0003 (1/2977) 0 * * Os_TE_564933 Chr2 29682460 29682459 + CASTAWAY 364 0.0825 (246/2981) 0 * * Os_TE_564905 Chr2 29664081 29664082 - ORSgTEMT00900099 250 0.0017 (5/2991) 0 * * Os_TE_564902 Chr2 29663740 29663741 - ORSiTETNOOT00134 607 0.0896 (264/2947) 0 * * Os_TE_564899 Chr2 29663393 29663394 + SZ-40LTR 2465 0.0013 (4/2984) 0 * Os_TE_564898 Os_TE_564898 Chr2 29663389 29663388 - GYPSY-A_LTR 8951 0.0013 (4/2986) 0 * Os_TE_564899 Os_TE_564868 Chr2 29658123 29658122 + INDITTO 263 0.0615 (184/2992) 0 * * Os_TE_564865 Chr2 29657597 29657598 - COPI2_LTR 4733 0.0007 (2/2998) 0 * Os_TE_564864 Os_TE_564864 Chr2 29657593 29657592 + COPI2_LTR 4733 0.0003 (1/2991) 0 * Os_TE_564865 Os_TE_564863 Chr2 29657117 29657116 - COPI2_LTR 4733 0.0204 (61/2996) 0 * * Os_TE_564834 Chr2 29642561 29642562 - MuDR3_OS 8604 0.1840 (551/2995) 0 * Os_TE_564833 Os_TE_564833 Chr2 29642552 29642551 - MuDR3_OS 8604 0.1800 (538/2989) 0 * Os_TE_564834 Os_TE_564809 Chr2 29639262 29639263 + ORSgTEMT00600192 355 0.1229 (366/2977) 0 * Os_TE_564808 Os_TE_564808 Chr2 29639260 29639259 - CASTAWAY 364 0.1219 (362/2970) 0 * Os_TE_564809 Os_TE_564800 Chr2 29637107 29637108 - SC-8_LTR 4951 0.0003 (1/2995) 0 * Os_TE_564799 Os_TE_564799 Chr2 29637103 29637102 + SC-8_LTR 4951 0.0003 (1/2995) 0 * Os_TE_564800 Os_TE_564778 Chr2 29629511 29629512 + TRUNCATOR 2918 0.0018 (5/2729) 0 * * Os_TE_564776 Chr2 29628128 29628129 + ORSgTEMT01700833 150 0.0003 (1/2997) 0 * * Os_TE_564765 Chr2 29624861 29624862 - ORSgTEMT02400179 221 0.1390 (375/2697) 0 * * Os_TE_564756 Chr2 29618420 29618421 - TELIA 141 0.0010 (3/2945) 0 * Os_TE_564755 Os_TE_564755 Chr2 29618412 29618411 + TELIA 141 0.0014 (4/2948) 0 * Os_TE_564756 Os_TE_564741 Chr2 29617164 29617165 + MPING 430 0.0030 (9/2978) 0 * * Os_TE_564723 Chr2 29604117 29604118 - TYPEM 227 0.5694 (1699/2984) 0 * * Os_TE_564716 Chr2 29602088 29602089 - SZ-COM 1308 0.0010 (3/2925) 0 * * Os_TE_564711 Chr2 29597399 29597400 + RIREX_LTR 8828 0.0007 (2/2989) 0 * * Os_TE_564706 Chr2 29594362 29594363 - RETRO2_LTR 12874 0.0686 (205/2989) 0 * Os_TE_564705 Os_TE_564705 Chr2 29594358 29594357 + RETRO2_LTR 12874 0.0683 (204/2987) 0 * Os_TE_564706 Os_TE_564657 Chr2 29582472 29582473 + SPMLIKE 10989 0.0003 (1/2917) 0 * Os_TE_564656 Os_TE_564656 Chr2 29582470 29582469 - ORSgTETN00200001 10994 0.0003 (1/2965) 0 * Os_TE_564657 Os_TE_564655 Chr2 29582420 29580860 - ORSgTEMT06100010 269 0.3888 (1148/2953) 1 Intact Os_TE_564654 Os_TE_564654 Chr2 29580860 29582420 + ORSgTEMT06100010 269 0.3928 (1161/2956) 1 Intact Os_TE_564655 Os_TE_564649 Chr2 29580165 29580166 - DS-RICE2N 613 0.0007 (2/2964) 0 * Os_TE_564648 Os_TE_564648 Chr2 29580158 29580157 + DS-RICE4N 715 0.0007 (2/2960) 0 * Os_TE_564649 Os_TE_564630 Chr2 29576415 29576416 - INDITTO 263 0.1769 (528/2984) 0 * Os_TE_564629 Os_TE_564629 Chr2 29576413 29576412 - ORSgTETNOOT00053 263 0.1777 (531/2988) 0 * Os_TE_564630 Os_TE_564623 Chr2 29575195 29575392 - ORSgTEMT02000041 194 0.3924 (1162/2961) 1 Intact * Os_TE_564614 Chr2 29573534 29573533 - ORSiTERTOOT00367 5639 0.0023 (7/2997) 0 * * Os_TE_564608 Chr2 29566459 29566460 + MDR2 6967 0.0003 (1/2970) 0 * Os_TE_564607 Os_TE_564607 Chr2 29566451 29566450 + MDR2 6967 0.0003 (1/2968) 0 * Os_TE_564608 Os_TE_564606 Chr2 29566281 29566282 - RETROSAT2LTRA 3112 0.0007 (2/2983) 0 * * Os_TE_564596 Chr2 29558768 29558769 + ORSgTEMT00300063 413 0.0007 (2/2987) 0 * * Os_TE_564593 Chr2 29556665 29556664 - INDITTO 263 0.0982 (294/2994) 0 * * Os_TE_564592 Chr2 29555870 29555871 + SC-1_LTR 6888 0.0103 (28/2726) 0 * * Os_TE_564584 Chr2 29554426 29554425 + STOWAWAY51_OS 246 0.1211 (349/2882) 0 * Os_TE_564583 Os_TE_564583 Chr2 29554420 29554421 - STOWAWAY51_OS 246 0.1497 (440/2940) 0 * Os_TE_564584 Os_TE_564582 Chr2 29554190 29554189 + SC-1_LTR 6888 0.0551 (165/2994) 0 * * Os_TE_564572 Chr2 29550429 29550430 + ORSgTEMT00502094 140 0.0573 (170/2967) 0 * * Os_TE_564568 Chr2 29548091 29548090 + DITTO 244 0.0100 (30/2993) 0 * Os_TE_564567 Os_TE_564567 Chr2 29548090 29548091 - ORSgTEMT00900198 245 0.0097 (29/2993) 0 * Os_TE_564568 Os_TE_564564 Chr2 29546515 29546268 - ORSgTEMT00900099 250 0.5421 (1611/2972) 1 Intact Os_TE_564561 Os_TE_564561 Chr2 29546266 29546513 + ORSgTEMT00900053 249 0.5304 (1562/2945) 1 Intact Os_TE_564564 Os_TE_564559 Chr2 29545348 29528497 - MERMITEB 1610 0.5346 (1577/2950) 1 Intact * Os_TE_564539 Chr2 29533932 29533931 - SZ-40LTR 2465 0.0017 (2/1181) 0 * * Os_TE_564525 Chr2 29528497 29545344 - MERMITE18B 1306 0.5313 (1568/2951) 1 Intact * Os_TE_564517 Chr2 29525548 29525699 + ORSgTEMT00500512 153 0.5331 (1596/2994) 1 Intact * Os_TE_564515 Chr2 29525305 29525160 + ORSgTEMT00500560 148 0.5327 (1589/2983) 1 Intact Os_TE_564513 Os_TE_564513 Chr2 29525155 29525303 + ORSgTEMT00500476 150 0.5376 (1595/2967) 1 Intact Os_TE_564515 Os_TE_564512 Chr2 29525053 29525052 + ORSgTEMT01601122 212 0.4805 (1432/2980) 0 * * Os_TE_564505 Chr2 29520687 29520686 - COPI2_LTR 4733 0.0003 (1/2988) 0 * * Os_TE_564504 Chr2 29518793 29518794 + ORSgTEMT03000039 377 0.2959 (884/2988) 0 * Os_TE_564503 Os_TE_564503 Chr2 29518784 29518783 - ORSgTEMT03000007 372 0.2929 (876/2991) 0 * Os_TE_564504 Os_TE_564501 Chr2 29515470 29513603 - RPO_OS 1983 0.7707 (2306/2992) 1 Intact Os_TE_564487 Os_TE_564487 Chr2 29511189 29515470 + RPO_OS 1983 0.7710 (2273/2948) 1 Intact Os_TE_564501 Os_TE_564486 Chr2 29510898 29510722 + COWARD-3 221 0.7655 (2275/2972) 1 Intact Os_TE_564485 Os_TE_564485 Chr2 29510722 29510898 - COWARD 200 0.7697 (2289/2974) 1 Intact Os_TE_564486 Os_TE_564484 Chr2 29510479 29510480 + ORSgTEMT01600815 230 0.2403 (719/2992) 0 * * Os_TE_564483 Chr2 29510263 29510264 + RIREX_LTR 8828 0.0007 (2/2880) 0 * Os_TE_564482 Os_TE_564482 Chr2 29510259 29510258 - RIREX_LTR 8828 0.0007 (2/2986) 0 * Os_TE_564483 Os_TE_564466 Chr2 29508379 29508380 - RIREX_LTR 8828 0.0017 (5/2998) 0 * Os_TE_564465 Os_TE_564465 Chr2 29508375 29508374 + RIREX_LTR 8828 0.0017 (5/2996) 0 * Os_TE_564466 Os_TE_564462 Chr2 29507468 29507467 - INDITTO 263 0.0017 (5/2991) 0 * * Os_TE_564449 Chr2 29501874 29501873 + COPIA2-LTR_OS 6433 0.0007 (2/2955) 0 * * Os_TE_564448 Chr2 29500950 29500951 + ORSgTETNOOT01834 251 0.1577 (417/2645) 0 * Os_TE_564447 Os_TE_564447 Chr2 29500946 29500945 + ORSgTETNOOT01686 252 0.1591 (475/2985) 0 * Os_TE_564448 Os_TE_564413 Chr2 29480782 29480783 - TEMPINDAS 4259 0.0017 (5/2999) 0 * * Os_TE_564411 Chr2 29479976 29479977 - COPI2_LTR 4733 0.0428 (128/2993) 0 * Os_TE_564410 Os_TE_564410 Chr2 29479972 29479971 + COPI2_LTR 4733 0.0438 (131/2993) 0 * Os_TE_564411 Os_TE_564396 Chr2 29470174 29470175 + ORSgTETNOOT01834 251 0.0003 (1/2955) 0 * * Os_TE_564376 Chr2 29451811 29451812 + INDITTO 263 0.4228 (1265/2992) 0 * Os_TE_564375 Os_TE_564375 Chr2 29451809 29451808 - INDITTO 263 0.4195 (1255/2992) 0 * Os_TE_564376 Os_TE_564339 Chr2 29436540 29436304 + STOWAWAY51_OS 246 0.8656 (2570/2969) 1 Intact Os_TE_564338 Os_TE_564338 Chr2 29436304 29436537 + STOWAWAY51_OS 246 0.8694 (2602/2993) 1 Intact Os_TE_564339 Os_TE_564337 Chr2 29436268 29436267 + STOWAWAY51_OS 246 0.0003 (1/2990) 0 * * Os_TE_564328 Chr2 29432688 29432689 + COPIA2-LTR_OS 6433 0.0050 (15/2984) 0 * Os_TE_564327 Os_TE_564327 Chr2 29432684 29432683 - COPIA2-LTR_OS 6433 0.0054 (16/2986) 0 * Os_TE_564328 Os_TE_564315 Chr2 29424856 29424857 + OLO24 345 0.0007 (2/2994) 0 * Os_TE_564314 Os_TE_564314 Chr2 29424854 29424853 - OLO24 345 0.0007 (2/2992) 0 * Os_TE_564315 Os_TE_564312 Chr2 29419869 29419870 + MPING 430 0.0007 (2/2997) 0 * Os_TE_564311 Os_TE_564311 Chr2 29419867 29419866 - MPING 430 0.0003 (1/2997) 0 * Os_TE_564312 Os_TE_564309 Chr2 29419294 29419295 + COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_564308 Os_TE_564308 Chr2 29419290 29419289 - COPI2_LTR 4733 0.0003 (1/2997) 0 * Os_TE_564309 Os_TE_564303 Chr2 29417693 29417694 - ORSgTERT00201216 11284 0.0007 (2/2984) 0 * Os_TE_564302 Os_TE_564302 Chr2 29417689 29417688 - RIRE2_LTR 11306 0.0003 (1/2978) 0 * Os_TE_564303 Os_TE_564259 Chr2 29408849 29408850 - ORSgTETNOOT02417 265 0.0014 (4/2941) 0 * * Os_TE_564251 Chr2 29406886 29406887 - RIREX_LTR 8828 0.0019 (5/2667) 0 * Os_TE_564250 Os_TE_564250 Chr2 29406882 29406881 + RIREX_LTR 8828 0.0015 (4/2668) 0 * Os_TE_564251 Os_TE_564249 Chr2 29405089 29405090 - AMYLTP 383 0.1550 (453/2922) 0 * Os_TE_564248 Os_TE_564248 Chr2 29405080 29405079 + AMYLTP 383 0.1693 (501/2959) 0 * Os_TE_564249 Os_TE_564225 Chr2 29398478 29398479 - LINE-05_OS 6739 0.0004 (1/2803) 0 * * Os_TE_564213 Chr2 29395592 29395593 - COPIA2-LTR_OS 6433 0.0030 (9/2956) 0 * Os_TE_564212 Os_TE_564212 Chr2 29395588 29395587 + COPIA2-LTR_OS 6433 0.0027 (8/2974) 0 * Os_TE_564213 Os_TE_564210 Chr2 29394929 29394930 + NDNA1TNA_OS 334 0.0003 (1/2993) 0 * Os_TE_564209 Os_TE_564209 Chr2 29394927 29394926 - NDNA1TNA_OS 334 0.0003 (1/2989) 0 * Os_TE_564210 Os_TE_564183 Chr2 29387037 29387038 - ORSgTERT00201385 8846 0.5843 (1747/2990) 0 * * Os_TE_564182 Chr2 29386923 29386924 + ORSiTERTOOT00296 5553 0.0003 (1/2992) 0 * Os_TE_564181 Os_TE_564181 Chr2 29386919 29386918 - SC-3_LTR 5748 0.0003 (1/2994) 0 * Os_TE_564182 Os_TE_564166 Chr2 29368545 29368398 + STOWAWAY47_OS 148 0.4321 (1291/2988) 1 Intact Os_TE_564165 Os_TE_564165 Chr2 29368398 29368545 + STOWAWAY47_OS 148 0.4341 (1295/2983) 1 Intact Os_TE_564166 Os_TE_564138 Chr2 29361811 29361810 + STOWAWAY51_OS 246 0.0003 (1/2991) 0 * Os_TE_564137 Os_TE_564137 Chr2 29361805 29361806 + ORSgTEMT01601591 242 0.0003 (1/2996) 0 * Os_TE_564138 Os_TE_564126 Chr2 29358674 29358348 + ORSgTEMT00600287 363 0.4237 (1266/2988) 1 Intact * Os_TE_564112 Chr2 29342693 29342694 - SC-3_LTR 5748 0.0003 (1/2982) 0 * Os_TE_564111 Os_TE_564111 Chr2 29342689 29342688 + ORSiTERTOOT00296 5553 0.0003 (1/2980) 0 * Os_TE_564112 Os_TE_564110 Chr2 29341309 29341310 - ORSiTETNOOT00134 607 0.0003 (1/2979) 0 * Os_TE_564109 Os_TE_564109 Chr2 29341302 29341301 + TWIF 586 0.0003 (1/2980) 0 * Os_TE_564110 Os_TE_564107 Chr2 29339775 29339774 + ORSgTETNOOT00908 242 0.0013 (4/2994) 0 * * Os_TE_564094 Chr2 29337388 29337389 - COPIA2-LTR_OS 6433 0.0004 (1/2820) -1 * * Os_TE_564080 Chr2 29329317 29329318 + ORSgTETNOOT01313 249 0.0094 (28/2982) 0 * Os_TE_564079 Os_TE_564079 Chr2 29329311 29329310 + ORSgTETNOOT01834 251 0.0091 (27/2968) 0 * Os_TE_564080 Os_TE_564062 Chr2 29317635 29317636 - SC-8_LTR 4951 0.0003 (1/2991) 0 * Os_TE_564061 Os_TE_564061 Chr2 29317631 29317630 + SC-8_LTR 4951 0.0003 (1/2990) 0 * Os_TE_564062 Os_TE_564036 Chr2 29312445 29312446 + RETRO2_LTR 12874 0.0538 (161/2995) 0 * Os_TE_564035 Os_TE_564035 Chr2 29312441 29312440 - RETRO2_LTR 12874 0.0534 (160/2994) 0 * Os_TE_564036 Os_TE_564034 Chr2 29311674 29311675 + HELITRON2_OS 15167 0.0003 (1/2991) 0 * * Os_TE_564030 Chr2 29310066 29310067 - TEMPINDAS 4259 0.0030 (9/2968) 0 * * Os_TE_564020 Chr2 29307475 29308583 - OSTE9 421 0.4340 (1289/2970) 1 Intact * Os_TE_564003 Chr2 29297052 29297053 - SC-3_LTR 5748 0.0003 (1/2986) 0 * * Os_TE_563998 Chr2 29293298 29293297 - TYPEM 227 0.0003 (1/2998) 0 * Os_TE_563997 Os_TE_563997 Chr2 29293297 29293298 - ORSgTEMT02400246 177 0.0003 (1/2999) 0 * Os_TE_563998 Os_TE_563994 Chr2 29291692 29291693 - INDITTO 263 0.0003 (1/2990) 0 * Os_TE_563993 Os_TE_563993 Chr2 29291690 29291689 + INDITTO 263 0.0003 (1/2992) 0 * Os_TE_563994 Os_TE_563989 Chr2 29284795 29284796 - MUDRN3_OS 903 0.0010 (3/2877) 0 * * Os_TE_563977 Chr2 29277633 29277632 + HELITRON8_OS 8831 0.3362 (1001/2977) 0 * * Os_TE_563975 Chr2 29277396 29277397 - STOWAWAY51_OS 246 0.0003 (1/2988) 0 * * Os_TE_563971 Chr2 29276049 29276050 + RETRO2A_LTR 12895 0.0017 (5/2990) 0 * Os_TE_563970 Os_TE_563970 Chr2 29276045 29276044 - RETRO1_LTR 8314 0.0013 (4/2995) 0 * Os_TE_563971 Os_TE_563953 Chr2 29268835 29268836 + ORSgTETNOOT00908 242 0.0017 (5/2941) 0 * Os_TE_563952 Os_TE_563952 Chr2 29268833 29268832 - ORSgTETNOOT00908 242 0.0017 (5/2955) 0 * Os_TE_563953 Os_TE_563949 Chr2 29268667 29268666 + ORSgTETNOOT00908 242 0.0003 (1/2903) 0 * * Os_TE_563915 Chr2 29256836 29256473 - ORSgTEMT00600085 364 0.8642 (1241/1436) 1 Intact Os_TE_563913 Os_TE_563913 Chr2 29256473 29256836 + ORSgTEMT00600583 335 0.4281 (1272/2971) 1 Intact Os_TE_563915 Os_TE_563893 Chr2 29248238 29248239 + INDITTO 263 0.0057 (17/2998) 0 * Os_TE_563892 Os_TE_563892 Chr2 29248236 29248235 - INDITTO 263 0.0057 (17/2987) 0 * Os_TE_563893 Os_TE_563889 Chr2 29247741 29247742 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_563888 Os_TE_563888 Chr2 29247737 29247736 - COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_563889 Os_TE_563887 Chr2 29244756 29244327 - MPING 430 0.0257 (77/2997) 1 Intact Os_TE_563886 Os_TE_563886 Chr2 29244327 29244756 + MPING 430 0.0260 (78/2997) 1 Intact Os_TE_563887 Os_TE_563885 Chr2 29238628 29238629 + COPI2_LTR 4733 0.0004 (1/2746) 0 * * Os_TE_563874 Chr2 29228827 29228826 - INDITTO 263 0.0003 (1/2930) 0 * * Os_TE_563873 Chr2 29228730 29228731 + ORSiTERTOOT00367 5639 0.0003 (1/2996) 0 * Os_TE_563872 Os_TE_563872 Chr2 29228726 29228725 - ORSiTERTOOT00367 5639 0.0003 (1/2996) 0 * Os_TE_563873 Os_TE_563870 Chr2 29228118 29228119 - SC-8_LTR 4951 0.0003 (1/2994) 0 * Os_TE_563869 Os_TE_563869 Chr2 29228114 29228113 + SC-8_LTR 4951 0.0003 (1/2995) 0 * Os_TE_563870 Os_TE_563863 Chr2 29223061 29223062 + TWIFB1 3737 0.0003 (1/2952) 0 * * Os_TE_563859 Chr2 29221149 29221148 - RETRO2_LTR 12874 0.5813 (1734/2983) 0 * * Os_TE_563847 Chr2 29215920 29214443 + ORSgTETN00200005 1121 0.4038 (1167/2890) 1 Intact Os_TE_563846 Os_TE_563846 Chr2 29214441 29215919 + CACTA-B 1103 0.4280 (1278/2986) 1 Intact Os_TE_563847 Os_TE_563842 Chr2 29212641 29212642 - MPING 430 0.0010 (3/2998) 0 * Os_TE_563841 Os_TE_563841 Chr2 29212639 29212638 + MPING 430 0.0010 (3/2999) 0 * Os_TE_563842 Os_TE_563831 Chr2 29210370 29210371 - Cassandra_OS-LTR 764 0.1664 (497/2986) 0 * Os_TE_563830 Os_TE_563830 Chr2 29210366 29210365 + Cassandra_OS-LTR 764 0.1707 (511/2993) 0 * Os_TE_563831 Os_TE_563824 Chr2 29209295 29209294 + CASTAWAY 364 0.0533 (159/2984) 0 * * Os_TE_563822 Chr2 29209067 29209068 + NDNA1TNA_OS 334 0.4180 (1251/2993) 0 * Os_TE_563821 Os_TE_563821 Chr2 29209065 29209064 - NDNA1TNA_OS 334 0.4118 (1230/2987) 0 * Os_TE_563822 Os_TE_563818 Chr2 29206322 29206323 + TWIFB1 3737 0.0007 (2/2999) 0 * * Os_TE_563816 Chr2 29205374 29205375 + HARB-1_OS 5166 0.0207 (62/2993) 0 * Os_TE_563815 Os_TE_563815 Chr2 29205372 29205371 - HARB-1_OS 5166 0.0207 (62/2990) 0 * Os_TE_563816 Os_TE_563814 Chr2 29205256 29205257 + MPING 430 0.0003 (1/2988) 0 * Os_TE_563813 Os_TE_563813 Chr2 29205254 29205253 - MPING 430 0.0003 (1/2986) 0 * Os_TE_563814 Os_TE_563807 Chr2 29200217 29200216 - STOWAWAY11_OS 292 0.0017 (5/2985) 0 * * Os_TE_563796 Chr2 29196193 29196194 + ORSgTETNOOT00032 218 0.1205 (360/2988) 0 * * Os_TE_563784 Chr2 29189647 29189648 - OLO24 345 0.0017 (5/2992) 0 * Os_TE_563783 Os_TE_563783 Chr2 29189645 29189644 + OLO24 345 0.0017 (5/2996) 0 * Os_TE_563784 Os_TE_563782 Chr2 29189567 29189568 - OLO24 345 0.0017 (5/2996) 0 * Os_TE_563781 Os_TE_563781 Chr2 29189565 29189564 + OLO24 345 0.0017 (5/2991) 0 * Os_TE_563782 Os_TE_563775 Chr2 29187256 29187257 - COPIA2-LTR_OS 6433 0.0138 (40/2897) 0 * Os_TE_563774 Os_TE_563774 Chr2 29187252 29187251 + COPIA2-LTR_OS 6433 0.0138 (40/2895) 0 * Os_TE_563775 Os_TE_563772 Chr2 29186222 29186223 + ORSiCMCM00100019 2717 0.0690 (205/2973) 0 * Os_TE_563771 Os_TE_563771 Chr2 29186218 29186217 - TRUNCATOR2_LTR 2904 0.0717 (213/2972) 0 * Os_TE_563772 Os_TE_563679 Chr2 29143286 29143287 + COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_563678 Os_TE_563678 Chr2 29143282 29143281 - COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_563679 Os_TE_563665 Chr2 29134933 29134934 + OSTE9 421 0.0021 (6/2899) 0 * Os_TE_563664 Os_TE_563664 Chr2 29134929 29134928 - OSTE9 421 0.0017 (5/2879) 0 * Os_TE_563665 Os_TE_563641 Chr2 29128428 29128427 - F770 284 0.0027 (8/2991) 0 * Os_TE_563640 Os_TE_563640 Chr2 29128427 29128428 + F770 284 0.0033 (10/2992) 0 * Os_TE_563641 Os_TE_563635 Chr2 29126320 29126321 + RIREX_LTR 8828 0.0003 (1/2992) 0 * Os_TE_563634 Os_TE_563634 Chr2 29126316 29126315 - RIREX_LTR 8828 0.0003 (1/2992) 0 * Os_TE_563635 Os_TE_563633 Chr2 29126132 29126133 - ORSgTEMT05200112 272 0.0033 (10/2991) 0 * Os_TE_563632 Os_TE_563632 Chr2 29126125 29126124 + ORSgTEMT05200084 283 0.0033 (10/2994) 0 * Os_TE_563633 Os_TE_563618 Chr2 29124594 29124593 + ORSgTEMT00600124 361 0.0027 (8/2937) 0 * * Os_TE_563594 Chr2 29115433 29115434 - COPIA2-LTR_OS 6433 0.0791 (236/2985) 0 * Os_TE_563593 Os_TE_563593 Chr2 29115429 29115428 + COPIA2-LTR_OS 6433 0.0758 (226/2980) 0 * Os_TE_563594 Os_TE_563591 Chr2 29114353 29114354 + SC-8_LTR 4951 0.0003 (1/2993) 0 * Os_TE_563590 Os_TE_563590 Chr2 29114349 29114348 - SC-8_LTR 4951 0.0003 (1/2993) 0 * Os_TE_563591 Os_TE_563578 Chr2 29110132 29110133 - SC-3_LTR 5748 0.0003 (1/2993) 0 * Os_TE_563577 Os_TE_563577 Chr2 29110128 29110127 + ORSiTERTOOT00296 5553 0.0003 (1/2994) 0 * Os_TE_563578 Os_TE_563573 Chr2 29108012 29108013 + ORSgTETNOOT01686 252 0.0013 (4/2975) 0 * * Os_TE_563563 Chr2 29104579 29104580 + MPING 430 0.0003 (1/2986) 0 * Os_TE_563562 Os_TE_563562 Chr2 29104577 29104576 - MPING 430 0.0003 (1/2986) 0 * Os_TE_563563 Os_TE_563561 Chr2 29104140 29104141 + INDITTO 263 0.0003 (1/2991) 0 * Os_TE_563560 Os_TE_563560 Chr2 29104138 29104137 - INDITTO 263 0.0003 (1/2992) 0 * Os_TE_563561 Os_TE_563532 Chr2 29093515 29093516 + ORSiTERTOOT00296 5553 0.0003 (1/2977) 0 * Os_TE_563531 Os_TE_563531 Chr2 29093511 29093510 - SC-3_LTR 5748 0.0007 (2/2977) 0 * Os_TE_563532 Os_TE_563511 Chr2 29077584 29077585 - INDITTO 263 0.0003 (1/2990) 0 * * Os_TE_563509 Chr2 29076523 29076524 - ORSiTETNOOT00134 607 0.0003 (1/2872) 0 * * Os_TE_563497 Chr2 29066901 29066900 - ORSgTEMT01800052 396 0.5542 (1652/2981) 0 * Os_TE_563496 Os_TE_563496 Chr2 29066888 29066889 - TYPEG 427 0.5365 (1550/2889) 0 * Os_TE_563497 Os_TE_563491 Chr2 29065566 29065740 + ORSgTEMT01700759 147 0.4625 (1376/2975) 0.93 Intact * Os_TE_563488 Chr2 29065308 29065307 - INDITTO 263 0.3344 (969/2898) 0 * * Os_TE_563455 Chr2 29032163 29032162 - STOWAWAY45_OS 266 0.0010 (3/2980) 0 * Os_TE_563454 Os_TE_563454 Chr2 29032160 29032161 + STOWAWAY45_OS 266 0.0017 (5/2983) 0 * Os_TE_563455 Os_TE_563428 Chr2 29021404 29021403 + STOWAWAY43_OS 233 0.4897 (1094/2234) -1 * * Os_TE_563424 Chr2 29020502 29020503 + ORSiTERTOOT00033 4884 0.0003 (1/2979) 0 * Os_TE_563423 Os_TE_563423 Chr2 29020499 29020498 - RETROFIT_LTR 4866 0.0003 (1/2973) 0 * Os_TE_563424 Os_TE_563422 Chr2 29019663 29019664 - COPIA2-LTR_OS 6433 0.0030 (9/2992) 0 * Os_TE_563421 Os_TE_563421 Chr2 29019659 29019658 + COPIA2-LTR_OS 6433 0.0030 (9/2992) 0 * Os_TE_563422 Os_TE_563419 Chr2 29019237 29019236 - ORSgTEMT00700002 381 0.5187 (1553/2994) 0 * Os_TE_563418 Os_TE_563418 Chr2 29019231 29019232 - ORSgTEMT00700002 381 0.5104 (1516/2970) 0 * Os_TE_563419 Os_TE_563414 Chr2 29018802 29018803 - OSTE33 1012 0.5049 (1488/2947) 0 * * Os_TE_563388 Chr2 29008284 29008046 - ORSgTEMT01601159 240 0.4572 (1353/2959) 1 Intact Os_TE_563387 Os_TE_563387 Chr2 29008046 29008284 - ORSgTEMT01601696 238 0.4767 (1378/2891) 1 Intact Os_TE_563388 Os_TE_563383 Chr2 29007158 29007390 + ORSgTETNOOT00355 222 0.4539 (1313/2893) 1 Intact * Os_TE_563381 Chr2 29007108 29007107 + STOLAB 312 0.5569 (1591/2857) 0 * * Os_TE_563369 Chr2 29001628 29001140 - OSTE20 496 0.4545 (1352/2975) 1 Intact Os_TE_563368 Os_TE_563368 Chr2 29001137 29001628 + OSTE20 496 0.4539 (1354/2983) 1 Intact Os_TE_563369 Os_TE_563366 Chr2 28995607 28995606 + STOWAWAY51_OS 246 0.0051 (15/2957) 0 * Os_TE_563365 Os_TE_563365 Chr2 28995601 28995602 + ORSgTEMT01601591 242 0.0061 (18/2972) 0 * Os_TE_563366 Os_TE_563363 Chr2 28994445 28994446 - HARB-1_OS 5166 0.0007 (2/2997) 0 * Os_TE_563362 Os_TE_563362 Chr2 28994443 28994442 + HARB-1_OS 5166 0.0007 (2/2996) 0 * Os_TE_563363 Os_TE_563352 Chr2 28989163 28989164 + HARB-1_OS 5166 0.0003 (1/2995) 0 * Os_TE_563351 Os_TE_563351 Chr2 28989161 28989160 - HARB-1_OS 5166 0.0003 (1/2998) 0 * Os_TE_563352 Os_TE_563349 Chr2 28987578 28987579 - MPING 430 0.0003 (1/2997) 0 * Os_TE_563348 Os_TE_563348 Chr2 28987576 28987575 + MPING 430 0.0003 (1/2997) 0 * Os_TE_563349 Os_TE_563304 Chr2 28966413 28966412 + NDNA1TNA_OS 334 0.0003 (1/2991) 0 * * Os_TE_563289 Chr2 28962383 28962384 + TWIF 586 0.0007 (2/2999) 0 * Os_TE_563288 Os_TE_563288 Chr2 28962376 28962375 - ORSiTETNOOT00134 607 0.0007 (2/2998) 0 * Os_TE_563289 Os_TE_563273 Chr2 28961458 28961457 + F770 284 0.0017 (5/2965) 0 * * Os_TE_563272 Chr2 28961428 28960671 - MUDRN3_OS 903 0.0782 (232/2968) 1 Intact Os_TE_563271 Os_TE_563271 Chr2 28960671 28961428 + MUDRN2_OS 756 0.0782 (232/2966) 1 Intact Os_TE_563272 Os_TE_563269 Chr2 28960596 28960597 + COPIA2-LTR_OS 6433 0.0003 (1/2968) 0 * * Os_TE_563263 Chr2 28959961 28959962 - MPING 430 0.0047 (13/2744) 0 * Os_TE_563262 Os_TE_563262 Chr2 28959959 28959958 + MPING 430 0.0053 (15/2846) 0 * Os_TE_563263 Os_TE_563260 Chr2 28957853 28957854 + HARB-1_OS 5166 0.0003 (1/2998) 0 * Os_TE_563259 Os_TE_563259 Chr2 28957851 28957850 - HARB-1_OS 5166 0.0003 (1/2997) 0 * Os_TE_563260 Os_TE_563258 Chr2 28957625 28957626 - COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_563257 Os_TE_563257 Chr2 28957621 28957620 + COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_563258 Os_TE_563255 Chr2 28953015 28953014 + TWIFB1 3737 0.0003 (1/2987) 0 * * Os_TE_563249 Chr2 28948536 28948537 - MPING 430 0.0037 (11/2996) 0 * Os_TE_563248 Os_TE_563248 Chr2 28948534 28948533 + MPING 430 0.0037 (11/2996) 0 * Os_TE_563249 Os_TE_563227 Chr2 28933935 28933934 + ORSgTEMT01601591 242 0.0023 (7/2992) 0 * * Os_TE_563223 Chr2 28932876 28932875 + MUJITOS1 3987 0.0017 (5/2999) 0 * * Os_TE_563222 Chr2 28932764 28932765 - RIREX_LTR 8828 0.0013 (4/2997) 0 * Os_TE_563221 Os_TE_563221 Chr2 28932760 28932759 + RIREX_LTR 8828 0.0013 (4/2999) 0 * Os_TE_563222 Os_TE_563197 Chr2 28917733 28917734 - ORSiTETNOOT00134 607 0.0003 (1/2984) 0 * Os_TE_563196 Os_TE_563196 Chr2 28917726 28917725 + TWIF 586 0.0003 (1/2987) 0 * Os_TE_563197 Os_TE_563177 Chr2 28909169 28909168 - TRUNCATOR 2918 0.0017 (5/2999) 0 * * Os_TE_563164 Chr2 28903040 28903039 + ORSgTEMT00501629 149 0.0003 (1/2863) 0 * * Os_TE_563158 Chr2 28902679 28902680 + MERMITEB 1610 0.0011 (3/2775) 0 * * Os_TE_563147 Chr2 28900594 28900595 - Cassandra_OS-LTR 764 0.0003 (1/2995) 0 * * Os_TE_563133 Chr2 28894611 28894612 - INDITTO 263 0.1751 (520/2970) 0 * Os_TE_563132 Os_TE_563132 Chr2 28894609 28894608 + INDITTO 263 0.1773 (527/2973) 0 * Os_TE_563133 Os_TE_563053 Chr2 28872293 28872294 - TOUNJ-30 377 0.0004 (1/2794) 0 * Os_TE_563052 Os_TE_563052 Chr2 28872291 28872290 + TOUNJ-30 377 0.0004 (1/2784) 0 * Os_TE_563053 Os_TE_562963 Chr2 28851183 28850938 - ORSgTEMT00901849 250 0.6681 (1997/2989) 1 Intact * Os_TE_562961 Chr2 28850936 28851181 - ORSgTEMT00901723 248 0.8864 (2638/2976) 1 Intact * Os_TE_562960 Chr2 28850462 28850463 - MPING 430 0.0007 (2/2990) 0 * Os_TE_562959 Os_TE_562959 Chr2 28850460 28850459 + MPING 430 0.0003 (1/2985) 0 * Os_TE_562960 Os_TE_562928 Chr2 28834093 28834094 - NDNA1TNA_OS 334 0.1240 (372/2999) 0 * Os_TE_562927 Os_TE_562927 Chr2 28834091 28834090 + NDNA1TNA_OS 334 0.1234 (370/2999) 0 * Os_TE_562928 Os_TE_562925 Chr2 28831922 28831921 + STOWAWAY44_OS 240 0.0013 (4/2994) 0 * Os_TE_562924 Os_TE_562924 Chr2 28831919 28831920 - STOWAWAY44_OS 240 0.0010 (3/2991) 0 * Os_TE_562925 Os_TE_562921 Chr2 28830865 28830864 - TEMPINDAS 4259 0.0003 (1/2990) 0 * * Os_TE_562916 Chr2 28830054 28830053 - ORSgTEMT01400022 212 0.0013 (4/2979) 0 * Os_TE_562915 Os_TE_562915 Chr2 28830049 28830050 - STOWAWAY9_OS 235 0.0017 (5/2986) 0 * Os_TE_562916 Os_TE_562906 Chr2 28828728 28828729 + F770 284 0.0020 (6/2987) 0 * Os_TE_562905 Os_TE_562905 Chr2 28828726 28828725 - F770 284 0.0017 (5/2982) 0 * Os_TE_562906 Os_TE_562904 Chr2 28823352 28823353 + MERMITE18E 1528 0.0003 (1/2993) 0 * * Os_TE_562899 Chr2 28818397 28818398 + TWIF 586 0.0017 (5/2982) 0 * Os_TE_562898 Os_TE_562898 Chr2 28818390 28818389 - ORSiTETNOOT00209 3624 0.0007 (2/2978) 0 * Os_TE_562899 Os_TE_562885 Chr2 28807265 28807264 + STOWAWAY51_OS 246 0.0003 (1/2996) 0 * Os_TE_562884 Os_TE_562884 Chr2 28807259 28807260 + ORSgTEMT01601591 242 0.0003 (1/2995) 0 * Os_TE_562885 Os_TE_562870 Chr2 28791400 28791399 - SC-3_LTR 5748 0.0040 (12/2989) 0 * * Os_TE_562869 Chr2 28789116 28789117 + RIREX_LTR 8828 0.0100 (30/2999) 0 * Os_TE_562868 Os_TE_562868 Chr2 28789112 28789111 - RIREX_LTR 8828 0.0097 (29/2998) 0 * Os_TE_562869 Os_TE_562838 Chr2 28781945 28781944 + ORSgTEMT02300015 257 0.0003 (1/2964) 0 * * Os_TE_562817 Chr2 28768436 28768437 + ORSgTETNOOT00908 242 0.0017 (5/2939) 0 * * Os_TE_562786 Chr2 28755888 28755889 - NDNA2TNA_OS 346 0.1237 (371/2998) 0 * * Os_TE_562782 Chr2 28753961 28753962 + RIREX_LTR 8828 0.0003 (1/2934) 0 * * Os_TE_562776 Chr2 28750722 28750376 - NDNA2TNA_OS 346 0.4706 (1407/2990) 1 Intact Os_TE_562771 Os_TE_562771 Chr2 28750376 28750722 + NDNA2TNA_OS 346 0.4690 (1401/2987) 1 Intact Os_TE_562776 Os_TE_562744 Chr2 28740559 28740560 + RETRO2_LTR 12874 0.1238 (371/2996) 0 * * Os_TE_562738 Chr2 28738858 28738859 - RETROSAT2LTR 12796 0.7519 (1512/2011) -1 * * Os_TE_562737 Chr2 28738830 28738829 + ORSiTERTOOT00088 856 0.0012 (2/1608) -1 * * Os_TE_562735 Chr2 28737800 28737799 + TRUNCATOR 2918 0.4520 (1195/2644) 0 * Os_TE_562734 Os_TE_562734 Chr2 28737799 28737800 - TRUNCATOR 2918 0.4336 (1124/2592) 0 * Os_TE_562735 Os_TE_562724 Chr2 28736395 28736396 + RIREX_LTR 8828 0.0017 (5/2992) 0 * Os_TE_562723 Os_TE_562723 Chr2 28736391 28736390 - RIREX_LTR 8828 0.0017 (5/2989) 0 * Os_TE_562724 Os_TE_562709 Chr2 28733758 28733757 - RIRE2_LTR 11306 0.0004 (1/2519) 0 * * Os_TE_562708 Chr2 28732876 28732875 - STOWAWAY51_OS 246 0.0003 (1/2994) 0 * * Os_TE_562693 Chr2 28730670 28730671 - COPI2_LTR 4733 0.0003 (1/2993) 0 * * Os_TE_562689 Chr2 28729695 28729696 - STOWAWAY11_OS 292 0.0004 (1/2837) 0 * * Os_TE_562686 Chr2 28729282 28729283 + Cassandra_OS-LTR 764 0.0018 (5/2843) 0 * Os_TE_562685 Os_TE_562685 Chr2 28729278 28729277 - Cassandra_OS-LTR 764 0.0021 (6/2835) 0 * Os_TE_562686 Os_TE_562664 Chr2 28722829 28722830 + INDITTO 263 0.0004 (1/2842) 0 * Os_TE_562663 Os_TE_562663 Chr2 28722827 28722826 - INDITTO 263 0.0004 (1/2827) 0 * Os_TE_562664 Os_TE_562648 Chr2 28714815 28714814 + ORSgTETNOOT00032 218 0.0015 (4/2652) 0 * * Os_TE_562635 Chr2 28712812 28712811 + ORSgTETNOOT00908 242 0.0014 (4/2951) 0 * * Os_TE_562625 Chr2 28710553 28710554 - INDITTO 263 0.0027 (8/2998) 0 * Os_TE_562624 Os_TE_562624 Chr2 28710551 28710550 + INDITTO 263 0.0027 (8/2997) 0 * Os_TE_562625 Os_TE_562580 Chr2 28679299 28679300 - ORSgTEMT02700001 255 0.0004 (1/2726) 0 * * Os_TE_562571 Chr2 28674841 28674842 - TREP215 239 0.0010 (3/2922) 0 * * Os_TE_562558 Chr2 28668022 28668023 + ORSgTEMT00501821 144 0.0007 (2/2949) 0 * * Os_TE_562557 Chr2 28667752 28667753 + COPIA2-LTR_OS 6433 0.0007 (2/2989) 0 * * Os_TE_562545 Chr2 28663295 28663296 + RETROSAT4_LTR 13504 0.0017 (5/2945) 0 * Os_TE_562544 Os_TE_562544 Chr2 28663291 28663290 - RETROSAT4_LTR 13504 0.0017 (5/2954) 0 * Os_TE_562545 Os_TE_562503 Chr2 28647251 28647252 - STOWAWAY49_OS 241 0.0010 (3/2971) 0 * * Os_TE_562494 Chr2 28645752 28645753 + TOS17LTR 138 0.0003 (1/2987) 0 * Os_TE_562493 Os_TE_562493 Chr2 28645748 28645747 - TOS17LTR 138 0.0003 (1/2991) 0 * Os_TE_562494 Os_TE_562475 Chr2 28636199 28636198 + STOWAWAY51_OS 246 0.0003 (1/2991) 0 * Os_TE_562474 Os_TE_562474 Chr2 28636193 28636194 + ORSgTEMT01601591 242 0.0003 (1/2993) 0 * Os_TE_562475 Os_TE_562467 Chr2 28632290 28632291 + RETRO2A_LTR 12895 0.0107 (32/2993) 0 * Os_TE_562466 Os_TE_562466 Chr2 28632286 28632285 - RETRO1_LTR 8314 0.0107 (32/2992) 0 * Os_TE_562467 Os_TE_562465 Chr2 28632123 28632124 + RETRO2A_LTR 12895 0.0013 (4/2995) 0 * Os_TE_562464 Os_TE_562464 Chr2 28632119 28632118 - RETRO1_LTR 8314 0.0013 (4/2997) 0 * Os_TE_562465 Os_TE_562457 Chr2 28622366 28622365 + STOWAWAY51_OS 246 0.0013 (4/2997) 0 * Os_TE_562456 Os_TE_562456 Chr2 28622360 28622361 + ORSgTEMT01601591 242 0.0013 (4/2999) 0 * Os_TE_562457 Os_TE_562455 Chr2 28622299 28622300 + COPIA2-LTR_OS 6433 0.0007 (2/2996) 0 * Os_TE_562454 Os_TE_562454 Chr2 28622295 28622294 - COPIA2-LTR_OS 6433 0.0007 (2/2996) 0 * Os_TE_562455 Os_TE_562449 Chr2 28618202 28618203 - TRUNCATOR 2918 0.0014 (4/2838) 0 * * Os_TE_562436 Chr2 28614193 28614194 - ORSiTETNOOT00134 607 0.0003 (1/2949) 0 * Os_TE_562435 Os_TE_562435 Chr2 28614186 28614185 + TWIF 586 0.0003 (1/2943) 0 * Os_TE_562436 Os_TE_562396 Chr2 28584725 28584726 - RIREX_LTR 8828 0.0007 (2/2999) 0 * Os_TE_562395 Os_TE_562395 Chr2 28584721 28584720 + RIREX_LTR 8828 0.0007 (2/2999) 0 * Os_TE_562396 Os_TE_562378 Chr2 28572568 28572569 - MuDR3_OS 8604 0.5209 (1510/2899) 0 * Os_TE_562377 Os_TE_562377 Chr2 28572560 28572559 + MuDR3_OS 8604 0.5172 (1490/2881) 0 * Os_TE_562378 Os_TE_562370 Chr2 28571494 28571493 + TWIF 586 0.0007 (2/2992) 0 * * Os_TE_562369 Chr2 28570504 28570503 + ORSgTETNOOT01834 251 0.0004 (1/2772) 0 * * Os_TE_562366 Chr2 28568407 28568169 - ORSgTEMT01601432 239 0.4654 (1378/2961) 1 Intact Os_TE_562365 Os_TE_562365 Chr2 28568169 28568407 + ORSgTEMT01602181 239 0.4593 (1353/2946) 1 Intact Os_TE_562366 Os_TE_562356 Chr2 28564824 28564823 + ORSgTETNOOT00908 242 0.0013 (4/2971) 0 * * Os_TE_562349 Chr2 28562136 28560694 + RPO_OS 1983 0.4425 (1293/2922) 1 Intact * Os_TE_562348 Chr2 28560325 28560326 - COPIA2-LTR_OS 6433 0.0003 (1/2975) 0 * Os_TE_562347 Os_TE_562347 Chr2 28560321 28560320 + COPIA2-LTR_OS 6433 0.0003 (1/2969) 0 * Os_TE_562348 Os_TE_562346 Chr2 28560207 28560208 - RIREX_LTR 8828 0.0007 (2/2983) 0 * Os_TE_562345 Os_TE_562345 Chr2 28560203 28560202 + RIREX_LTR 8828 0.0007 (2/2982) 0 * Os_TE_562346 Os_TE_562318 Chr2 28553866 28553867 - RIREX_LTR 8828 0.0024 (7/2936) 0 * Os_TE_562317 Os_TE_562317 Chr2 28553862 28553861 + RIREX_LTR 8828 0.0024 (7/2940) 0 * Os_TE_562318 Os_TE_562315 Chr2 28549962 28549963 + COPIA2-LTR_OS 6433 0.0007 (2/2992) 0 * Os_TE_562314 Os_TE_562314 Chr2 28549958 28549957 - COPIA2-LTR_OS 6433 0.0007 (2/2982) 0 * Os_TE_562315 Os_TE_562306 Chr2 28542624 28542625 + AMYLTP 383 0.0010 (3/2991) 0 * Os_TE_562305 Os_TE_562305 Chr2 28542616 28542615 - AMYLTP 383 0.0017 (5/2992) 0 * Os_TE_562306 Os_TE_562273 Chr2 28526544 28526543 - STOWAWAY46_OS 154 0.0017 (5/2969) 0 * * Os_TE_562239 Chr2 28510667 28510666 + ORSiTERTOOT00074 4935 0.0010 (3/2999) 0 * * Os_TE_562215 Chr2 28495156 28493796 + ORSgTETN00200005 1121 0.4692 (1395/2973) 1 Intact Os_TE_562212 Os_TE_562212 Chr2 28493793 28495153 + CACTA-B 1103 0.4681 (1394/2978) 1 Intact Os_TE_562215 Os_TE_562211 Chr2 28493640 28493641 + ORSgTETNOOT00792 273 0.0007 (2/2994) 0 * * Os_TE_562196 Chr2 28486500 28486499 + COPIA2-LTR_OS 6433 0.0007 (2/2993) 0 * * Os_TE_562169 Chr2 28472416 28472417 - ORSiTETNOOT00141 607 0.0003 (1/2934) 0 * Os_TE_562168 Os_TE_562168 Chr2 28472409 28472408 + TWIF 586 0.0003 (1/2892) 0 * Os_TE_562169 Os_TE_562138 Chr2 28467585 28467584 + MERMITEA 1710 0.0014 (4/2948) 0 * * Os_TE_562127 Chr2 28456445 28456444 - STOWAWAY51_OS 246 0.0004 (1/2569) 0 * * Os_TE_562123 Chr2 28455079 28455080 + HARB-1_OS 5166 0.0003 (1/2991) 0 * Os_TE_562122 Os_TE_562122 Chr2 28455077 28455076 - HARB-1_OS 5166 0.0003 (1/2990) 0 * Os_TE_562123 Os_TE_562092 Chr2 28446661 28446662 - RETROSAT2LTR 12796 0.5268 (1553/2948) 0 * * Os_TE_562079 Chr2 28439816 28439817 + AMYLTP 383 0.0007 (2/2979) 0 * Os_TE_562078 Os_TE_562078 Chr2 28439808 28439807 - AMYLTP 383 0.0007 (2/2977) 0 * Os_TE_562079 Os_TE_562077 Chr2 28439788 28439789 + F770 284 0.0007 (2/2984) 0 * * Os_TE_562068 Chr2 28438305 28438306 + COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_562067 Os_TE_562067 Chr2 28438301 28438300 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_562068 Os_TE_562057 Chr2 28432237 28432238 - COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * * Os_TE_562054 Chr2 28431558 28431557 + RETROSAT4_LTR 13504 0.4972 (1324/2663) 0 * * Os_TE_562050 Chr2 28430568 28430567 + INDITTO 263 0.0043 (12/2798) 0 * * Os_TE_562043 Chr2 28427171 28427170 - MERMITE18D 1491 0.0011 (3/2846) 0 * * Os_TE_562042 Chr2 28426759 28426760 + MPING 430 0.0004 (1/2841) 0 * Os_TE_562041 Os_TE_562041 Chr2 28426757 28426756 - MPING 430 0.0004 (1/2840) 0 * Os_TE_562042 Os_TE_562033 Chr2 28424891 28424892 + ORSgTETNOOT00908 242 0.0003 (1/2976) 0 * Os_TE_562032 Os_TE_562032 Chr2 28424884 28424883 + ORSgTETNOOT01219 231 0.0003 (1/2976) 0 * Os_TE_562033 Os_TE_561980 Chr2 28393285 28393286 - OSTE24 683 0.0013 (4/2993) 0 * Os_TE_561979 Os_TE_561979 Chr2 28393275 28393274 - OSTE24 683 0.0017 (5/2980) 0 * Os_TE_561980 Os_TE_561975 Chr2 28391898 28391897 - STOWAWAY44_OS 240 0.0023 (7/2996) 0 * Os_TE_561974 Os_TE_561974 Chr2 28391892 28391893 - STOWAWAY44_OS 240 0.0020 (6/2994) 0 * Os_TE_561975 Os_TE_561963 Chr2 28388467 28388466 + COPIA2-LTR_OS 6433 0.0010 (3/2990) 0 * * Os_TE_561933 Chr2 28375451 28375452 + COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_561932 Os_TE_561932 Chr2 28375447 28375446 - COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_561933 Os_TE_561929 Chr2 28374267 28374266 + AMYLTP 383 0.0017 (5/2993) 0 * * Os_TE_561917 Chr2 28370715 28371129 + ORSiTEMT00300001 383 0.3893 (1164/2990) 1 Intact * Os_TE_561904 Chr2 28364096 28364097 + SC-8_LTR 4951 0.0007 (2/2998) 0 * Os_TE_561903 Os_TE_561903 Chr2 28364092 28364091 - SC-8_LTR 4951 0.0007 (2/2999) 0 * Os_TE_561904 Os_TE_561883 Chr2 28353338 28353339 + COPIA2-LTR_OS 6433 0.0007 (2/2985) 0 * Os_TE_561882 Os_TE_561882 Chr2 28353334 28353333 - COPIA2-LTR_OS 6433 0.0007 (2/2988) 0 * Os_TE_561883 Os_TE_561881 Chr2 28351065 28351066 + SZ-17_LTR 3387 0.0003 (1/2972) 0 * Os_TE_561880 Os_TE_561880 Chr2 28351061 28351060 - SZ-17_LTR 3387 0.0003 (1/2991) 0 * Os_TE_561881 Os_TE_561849 Chr2 28341355 28341356 + F569 228 0.0034 (10/2971) 0 * Os_TE_561848 Os_TE_561848 Chr2 28341353 28341352 - F569 228 0.0037 (11/2970) 0 * Os_TE_561849 Os_TE_561847 Chr2 28340780 28340781 + SC-8_LTR 4951 0.0020 (6/2961) 0 * Os_TE_561846 Os_TE_561846 Chr2 28340776 28340775 - SC-8_LTR 4951 0.0017 (5/2962) 0 * Os_TE_561847 Os_TE_561836 Chr2 28335211 28335210 + SINE1OS 127 0.0037 (11/2998) 0 * * Os_TE_561834 Chr2 28333966 28333967 + RIRE2_LTR 11306 0.0017 (5/2993) 0 * Os_TE_561833 Os_TE_561833 Chr2 28333962 28333961 - RIRE2_LTR 11306 0.0013 (4/2992) 0 * Os_TE_561834 Os_TE_561824 Chr2 28330306 28330305 + ORSiTERT00200145 12238 0.0037 (11/2972) 0 * * Os_TE_561822 Chr2 28330137 28330136 - CASTAWAY 364 0.0013 (4/2991) 0 * * Os_TE_561820 Chr2 28329960 28329959 - RIREX_LTR 8828 0.0017 (5/2996) 0 * * Os_TE_561817 Chr2 28326445 28326446 + COPIA2-LTR_OS 6433 0.0003 (1/2984) 0 * Os_TE_561816 Os_TE_561816 Chr2 28326441 28326440 - COPIA2-LTR_OS 6433 0.0003 (1/2982) 0 * Os_TE_561817 Os_TE_561777 Chr2 28317727 28317728 + INDITTO 263 0.0596 (178/2988) 0 * Os_TE_561776 Os_TE_561776 Chr2 28317725 28317724 - INDITTO 263 0.0619 (185/2991) 0 * Os_TE_561777 Os_TE_561748 Chr2 28295740 28295739 - ORSgTEMT00900965 216 0.0003 (1/2979) 0 * * Os_TE_561701 Chr2 28283557 28283556 + RETRO2_LTR 12874 0.5438 (1578/2902) 0 * * Os_TE_561682 Chr2 28273934 28273935 - MPING 430 0.5168 (1550/2999) 0 * Os_TE_561681 Os_TE_561681 Chr2 28273932 28273931 + MPING 430 0.5167 (1549/2998) 0 * Os_TE_561682 Os_TE_561679 Chr2 28273513 28273514 - CASGRANDA 465 0.0017 (5/2993) 0 * * Os_TE_561655 Chr2 28266265 28266264 + GYPSY-A_LTR 8951 0.0012 (3/2589) 0 * * Os_TE_561622 Chr2 28251915 28251916 - ORSiTERTOOT00335 4964 0.0003 (1/2975) 0 * * Os_TE_561608 Chr2 28245122 28245121 + COPI2_LTR 4733 0.0003 (1/2990) 0 * * Os_TE_561599 Chr2 28243970 28243971 + MPING 430 0.0003 (1/2997) 0 * Os_TE_561598 Os_TE_561598 Chr2 28243968 28243967 - MPING 430 0.0003 (1/2999) 0 * Os_TE_561599 Os_TE_561597 Chr2 28243471 28243472 + ORSgTETNOOT02316 263 0.1034 (309/2989) 0 * Os_TE_561596 Os_TE_561596 Chr2 28243469 28243468 - INDITTO 263 0.1045 (313/2995) 0 * Os_TE_561597 Os_TE_561576 Chr2 28233574 28233228 + NDNA2TNA_OS 346 0.4696 (1367/2911) 1 Intact * Os_TE_561560 Chr2 28232390 28232391 + NDNA1TNA_OS 334 0.5433 (1625/2991) 0 * Os_TE_561559 Os_TE_561559 Chr2 28232388 28232387 - NDNA1TNA_OS 334 0.5337 (1576/2953) 0 * Os_TE_561560 Os_TE_561558 Chr2 28231167 28231166 + TRUNCATOR 2918 0.0063 (19/2993) 0 * Os_TE_561557 Os_TE_561557 Chr2 28231166 28231167 - TRUNCATOR 2918 0.0060 (18/2997) 0 * Os_TE_561558 Os_TE_561552 Chr2 28229148 28229149 + RIREX_LTR 8828 0.0063 (19/2994) 0 * Os_TE_561551 Os_TE_561551 Chr2 28229144 28229143 - RIREX_LTR 8828 0.0057 (17/2989) 0 * Os_TE_561552 Os_TE_561541 Chr2 28225461 28225462 + RIREX_LTR 8828 0.0010 (3/2998) 0 * Os_TE_561540 Os_TE_561540 Chr2 28225457 28225456 - RIREX_LTR 8828 0.0010 (3/2998) 0 * Os_TE_561541 Os_TE_561524 Chr2 28219829 28219830 - TYPEM 227 0.0017 (5/2986) 0 * Os_TE_561523 Os_TE_561523 Chr2 28219828 28219827 - ORSgTEMT02400179 221 0.0017 (5/2986) 0 * Os_TE_561524 Os_TE_561517 Chr2 28214541 28214542 + SZ-48LTR 3632 0.0010 (3/2965) 0 * Os_TE_561516 Os_TE_561516 Chr2 28214537 28214536 - SZ-48LTR 3632 0.0017 (5/2968) 0 * Os_TE_561517 Os_TE_561511 Chr2 28212277 28212278 - CACTA-Q 2268 0.6402 (1909/2982) 0 * Os_TE_561510 Os_TE_561510 Chr2 28212275 28212274 + CACTA-Q 2268 0.6337 (1872/2954) 0 * Os_TE_561511 Os_TE_561487 Chr2 28191380 28191381 - SZ-22_LTR 4403 0.0040 (12/2974) 0 * Os_TE_561486 Os_TE_561486 Chr2 28191376 28191375 + ORSiTERTOOT00226 792 0.0044 (13/2976) 0 * Os_TE_561487 Os_TE_561475 Chr2 28181212 28181213 + F569 228 0.0043 (12/2780) 0 * Os_TE_561474 Os_TE_561474 Chr2 28181210 28181209 - F569 228 0.0043 (12/2781) 0 * Os_TE_561475 Os_TE_561467 Chr2 28175481 28175480 - COPI2_LTR 4733 0.0003 (1/2994) 0 * * Os_TE_561466 Chr2 28175393 28175392 + STOWAWAY51_OS 246 0.0017 (5/2993) 0 * Os_TE_561465 Os_TE_561465 Chr2 28175387 28175388 + ORSgTEMT01601591 242 0.0017 (5/2997) 0 * Os_TE_561466 Os_TE_561448 Chr2 28170230 28170231 - RIREX_LTR 8828 0.0007 (2/2977) 0 * Os_TE_561447 Os_TE_561447 Chr2 28170226 28170225 + RIREX_LTR 8828 0.0007 (2/2981) 0 * Os_TE_561448 Os_TE_561445 Chr2 28169939 28169940 + WANDERER 232 0.5167 (1544/2988) 0 * * Os_TE_561410 Chr2 28153724 28153725 - RIREX_LTR 8828 0.0013 (4/2996) 0 * Os_TE_561409 Os_TE_561409 Chr2 28153720 28153719 + RIREX_LTR 8828 0.0013 (4/2997) 0 * Os_TE_561410 Os_TE_561406 Chr2 28153141 28153142 + COPI2_LTR 4733 0.0010 (3/2996) 0 * Os_TE_561405 Os_TE_561405 Chr2 28153137 28153136 - COPI2_LTR 4733 0.0010 (3/2997) 0 * Os_TE_561406 Os_TE_561368 Chr2 28138400 28138401 + OSTE33 1012 0.0013 (4/2998) 0 * Os_TE_561367 Os_TE_561367 Chr2 28138391 28138390 + OSTE33 1012 0.0017 (5/2998) 0 * Os_TE_561368 Os_TE_561366 Chr2 28137788 28137789 - MuDR4_OS 7610 0.0007 (2/2996) 0 * Os_TE_561365 Os_TE_561365 Chr2 28137782 28137781 - MuDR4_OS 7610 0.0007 (2/2996) 0 * Os_TE_561366 Os_TE_561351 Chr2 28132512 28132513 + ORSiTERTOOT00074 4935 0.0003 (1/2998) 0 * Os_TE_561350 Os_TE_561350 Chr2 28132508 28132507 - ORSiTERTOOT00074 4935 0.0003 (1/2989) 0 * Os_TE_561351 Os_TE_561322 Chr2 28113459 28113458 + TWIFB1 3737 0.0003 (1/2952) 0 * * Os_TE_561299 Chr2 28099500 28099499 + NDNA1TNA_OS 334 0.1022 (306/2993) 0 * Os_TE_561298 Os_TE_561298 Chr2 28099499 28099500 - ORSgTEMT00100799 337 0.1007 (301/2989) 0 * Os_TE_561299 Os_TE_561283 Chr2 28093453 28093454 - ORSgTERT00201216 11284 0.0954 (286/2997) 0 * * Os_TE_561282 Chr2 28093150 28092791 + ORSgTEMT00600124 361 0.3915 (1173/2996) 1 Intact Os_TE_561280 Os_TE_561280 Chr2 28092787 28093150 + CASTAWAY 364 0.3882 (1161/2991) 1 Intact Os_TE_561282 Os_TE_561261 Chr2 28086261 28086262 + MPING 430 0.0003 (1/2997) 0 * Os_TE_561260 Os_TE_561260 Chr2 28086259 28086258 - MPING 430 0.0003 (1/2997) 0 * Os_TE_561261 Os_TE_561238 Chr2 28082764 28082765 + MDR2 6967 0.0114 (34/2992) 0 * Os_TE_561237 Os_TE_561237 Chr2 28082756 28082755 + MDR2 6967 0.0117 (35/2991) 0 * Os_TE_561238 Os_TE_561228 Chr2 28082054 28082053 - RIREX_LTR 8828 0.0003 (1/2987) 0 * * Os_TE_561223 Chr2 28071330 28071331 - COPIA2-LTR_OS 6433 0.0090 (27/2991) 0 * * Os_TE_561216 Chr2 28070547 28051330 - ORSgTERT00100363 6446 0.3907 (1169/2992) 1 Intact Os_TE_561204 Os_TE_561204 Chr2 28051330 28070553 - COPIA2-LTR_OS 6433 0.3911 (1171/2994) 1 Intact Os_TE_561216 Os_TE_561187 Chr2 28048728 28048729 - AMYLTP 383 0.0017 (5/2995) 0 * Os_TE_561186 Os_TE_561186 Chr2 28048720 28048719 + AMYLTP 383 0.0013 (4/2994) 0 * Os_TE_561187 Os_TE_561183 Chr2 28047861 28048001 - TELIA 141 0.3853 (1122/2912) 1 Intact * Os_TE_561170 Chr2 28041097 28041096 + CACTA-H 1152 0.0003 (1/2991) 0 * Os_TE_561169 Os_TE_561169 Chr2 28041096 28041097 + ORSgTETN00200005 1121 0.0003 (1/2991) 0 * Os_TE_561170 Os_TE_561128 Chr2 28013069 28013070 + RIREX_LTR 8828 0.0027 (8/2998) 0 * Os_TE_561127 Os_TE_561127 Chr2 28013065 28013064 - RIREX_LTR 8828 0.0027 (8/2996) 0 * Os_TE_561128 Os_TE_561125 Chr2 28012016 28011676 + NDNA2TNA_OS 346 0.3937 (1178/2992) 1 Intact Os_TE_561121 Os_TE_561121 Chr2 28011671 28012012 - NDNA2TNA_OS 346 0.3957 (1185/2995) 1 Intact Os_TE_561125 Os_TE_561112 Chr2 28008770 28008341 + MPING 430 0.0164 (49/2991) 1 Intact Os_TE_561111 Os_TE_561111 Chr2 28008341 28008770 - MPING 430 0.0161 (48/2989) 1 Intact Os_TE_561112 Os_TE_561102 Chr2 27993002 27993001 + ORSgTETNOOT01834 251 0.0003 (1/2984) 0 * * Os_TE_561089 Chr2 27990921 27990922 - ORSiTETNOOT00134 607 0.0003 (1/2924) 0 * Os_TE_561088 Os_TE_561088 Chr2 27990914 27990913 + TWIF 586 0.0003 (1/2873) 0 * Os_TE_561089 Os_TE_561086 Chr2 27990675 27990674 + TWIFBIG 3567 0.0017 (5/2980) 0 * * Os_TE_561078 Chr2 27982981 27982982 - SZ-22_LTR 4403 0.0096 (28/2928) 0 * * Os_TE_561025 Chr2 27969771 27969772 + AMYLTP 383 0.5149 (1540/2991) 0 * Os_TE_561024 Os_TE_561024 Chr2 27969763 27969762 - AMYLTP 383 0.5125 (1534/2993) 0 * Os_TE_561025 Os_TE_561021 Chr2 27969513 27969512 + AMYLTP 383 0.0987 (264/2676) 0 * * Os_TE_561012 Chr2 27968868 27968869 - SC-10_LTR 4920 0.0030 (9/2972) 0 * Os_TE_561011 Os_TE_561011 Chr2 27968864 27968863 + SC-10_LTR 4920 0.0030 (9/2974) 0 * Os_TE_561012 Os_TE_561006 Chr2 27965448 27965447 - STOWAWAY51_OS 246 0.0003 (1/2973) 0 * Os_TE_561005 Os_TE_561005 Chr2 27965442 27965443 + STOWAWAY51_OS 246 0.0003 (1/2951) 0 * Os_TE_561006 Os_TE_561003 Chr2 27961898 27961899 - RIREX_LTR 8828 0.0010 (3/2990) 0 * Os_TE_561002 Os_TE_561002 Chr2 27961894 27961893 + RIREX_LTR 8828 0.0010 (3/2991) 0 * Os_TE_561003 Os_TE_560998 Chr2 27958200 27958199 + SZ-9LTR 965 0.0027 (6/2244) 0 * * Os_TE_560994 Chr2 27956541 27956542 - RETRO1_LTR 8314 0.0003 (1/2997) 0 * Os_TE_560993 Os_TE_560993 Chr2 27956537 27956536 + RETRO2A_LTR 12895 0.0003 (1/2996) 0 * Os_TE_560994 Os_TE_560992 Chr2 27956184 27956185 - ORSgTEMT02000047 197 0.0889 (266/2993) 0 * * Os_TE_560991 Chr2 27955753 27955752 + ORSgTEMT01601122 212 0.0017 (5/2983) 0 * Os_TE_560990 Os_TE_560990 Chr2 27955750 27955751 + ORSgTEMT01601122 212 0.0017 (5/2985) 0 * Os_TE_560991 Os_TE_560988 Chr2 27954803 27954804 - SZ-55_LTR 10318 0.0017 (5/2962) 0 * * Os_TE_560968 Chr2 27950164 27949930 + ORSgTETNOOT00908 242 0.5079 (1515/2983) 1 Intact * Os_TE_560956 Chr2 27942979 27942980 + RETROSAT4_LTR 13504 0.0017 (5/2984) 0 * Os_TE_560955 Os_TE_560955 Chr2 27942975 27942974 - SZ-35LTR 3853 0.0017 (5/2982) 0 * Os_TE_560956 Os_TE_560954 Chr2 27942182 27942181 + STOWAWAY51_OS 246 0.0017 (5/2985) 0 * Os_TE_560953 Os_TE_560953 Chr2 27942176 27942177 - STOWAWAY51_OS 246 0.0017 (5/2991) 0 * Os_TE_560954 Os_TE_560905 Chr2 27925924 27925923 - TREP215 239 0.6519 (1794/2752) 0 * Os_TE_560904 Os_TE_560904 Chr2 27925917 27925918 + ORSgTEMT01602051 240 0.6507 (1794/2757) 0 * Os_TE_560905 Os_TE_560896 Chr2 27923438 27922774 + Cassandra_OS-LTR 764 0.4031 (1207/2994) 1 Intact Os_TE_560892 Os_TE_560892 Chr2 27922774 27923438 - Cassandra_OS-LTR 764 0.4049 (1211/2991) 1 Intact Os_TE_560896 Os_TE_560874 Chr2 27915594 27915595 + OSCOPIA2_LTR 5476 0.0007 (2/2992) 0 * * Os_TE_560867 Chr2 27912074 27912075 + TWIF 586 0.0003 (1/2982) 0 * Os_TE_560866 Os_TE_560866 Chr2 27912067 27912066 - ORSiTETNOOT00134 607 0.0003 (1/2982) 0 * Os_TE_560867 Os_TE_560858 Chr2 27907940 27907939 - COWARD 200 0.0017 (5/2988) 0 * * Os_TE_560849 Chr2 27904046 27904047 + RETROSAT4_LTR 13504 0.0010 (3/2972) 0 * Os_TE_560848 Os_TE_560848 Chr2 27904042 27904041 - SZ-35LTR 3853 0.0013 (4/2979) 0 * Os_TE_560849 Os_TE_560790 Chr2 27874290 27874289 - STOWAWAY51_OS 246 0.0003 (1/2984) 0 * * Os_TE_560781 Chr2 27872800 27872801 + ORSgTEMT00600120 364 0.0013 (4/2991) 0 * Os_TE_560780 Os_TE_560780 Chr2 27872798 27872797 - CASTAWAY 364 0.0013 (4/2995) 0 * Os_TE_560781 Os_TE_560744 Chr2 27860933 27860934 - MuDR2_OS 6770 0.0065 (18/2749) 0 * Os_TE_560743 Os_TE_560743 Chr2 27860924 27860923 + MuDR2_OS 6770 0.0058 (16/2760) 0 * Os_TE_560744 Os_TE_560722 Chr2 27857177 27857178 + ORSiTERTOOT00028 8600 0.0003 (1/2989) 0 * Os_TE_560721 Os_TE_560721 Chr2 27857173 27857172 - TRUNCATOR2_LTR 2904 0.0003 (1/2979) 0 * Os_TE_560722 Os_TE_560720 Chr2 27857100 27857101 - ORSgTEMT02400179 221 0.0040 (12/2991) 0 * Os_TE_560719 Os_TE_560719 Chr2 27857099 27857098 - TYPEM 227 0.0040 (12/2989) 0 * Os_TE_560720 Os_TE_560718 Chr2 27857067 27857068 - CENTRE 280 0.0003 (1/2993) 0 * * Os_TE_560717 Chr2 27856812 27856811 + STOWAWAY51_OS 246 0.0003 (1/2999) 0 * Os_TE_560716 Os_TE_560716 Chr2 27856806 27856807 + ORSgTEMT01601591 242 0.0003 (1/2998) 0 * Os_TE_560717 Os_TE_560686 Chr2 27848026 27848025 + COPI2_LTR 4733 0.0003 (1/2987) 0 * * Os_TE_560685 Chr2 27847838 27847839 + NDNA1TNA_OS 334 0.0030 (9/2994) 0 * Os_TE_560684 Os_TE_560684 Chr2 27847836 27847835 - NDNA1TNA_OS 334 0.0033 (10/2994) 0 * Os_TE_560685 Os_TE_560658 Chr2 27837254 27837058 - ORSgTEMT02000040 196 0.3808 (1140/2994) 1 Intact * Os_TE_560653 Chr2 27834544 27834545 - RIRE2_LTR 11306 0.0030 (9/2994) 0 * Os_TE_560652 Os_TE_560652 Chr2 27834540 27834539 - ORSgTERT00201216 11284 0.0033 (10/2997) 0 * Os_TE_560653 Os_TE_560645 Chr2 27831586 27831585 + SZ-37_LTR 12001 0.8412 (1308/1555) -1 * * Os_TE_560630 Chr2 27816013 27827631 - ORSgTETN00200001 10994 0.3740 (1110/2968) 1 Intact * Os_TE_560625 Chr2 27815102 27815101 - ORSgTEMT01602082 215 0.0017 (5/2984) 0 * Os_TE_560624 Os_TE_560624 Chr2 27815099 27815100 - ORSgTEMT01602521 238 0.0013 (4/2975) 0 * Os_TE_560625 Os_TE_560616 Chr2 27814162 27814163 + COPIA2-LTR_OS 6433 0.0007 (2/2991) 0 * Os_TE_560615 Os_TE_560615 Chr2 27814158 27814157 - COPIA2-LTR_OS 6433 0.0007 (2/2991) 0 * Os_TE_560616 Os_TE_560610 Chr2 27811345 27811346 - COPI2_LTR 4733 0.0007 (2/2951) 0 * Os_TE_560609 Os_TE_560609 Chr2 27811341 27811340 + COPI2_LTR 4733 0.0007 (2/2946) 0 * Os_TE_560610 Os_TE_560534 Chr2 27763337 27763338 - AMYLTP 383 0.6046 (1746/2888) 0 * Os_TE_560533 Os_TE_560533 Chr2 27763331 27763330 + AMYLTP 383 0.6073 (1775/2923) 0 * Os_TE_560534 Os_TE_560510 Chr2 27757243 27757244 - RETROSAT4_LTR 13504 0.3593 (651/1812) 0 * Os_TE_560509 Os_TE_560509 Chr2 27757239 27757238 + RETROSAT4_LTR 13504 0.6114 (1816/2970) 0 * Os_TE_560510 Os_TE_560485 Chr2 27745902 27745903 - SC-8_LTR 4951 0.0010 (3/2991) 0 * Os_TE_560484 Os_TE_560484 Chr2 27745898 27745897 + SC-8_LTR 4951 0.0010 (3/2989) 0 * Os_TE_560485 Os_TE_560480 Chr2 27743502 27743503 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_560479 Os_TE_560479 Chr2 27743498 27743497 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_560480 Os_TE_560478 Chr2 27743233 27743234 - ORSgTEMT02400179 221 0.0003 (1/2997) 0 * Os_TE_560477 Os_TE_560477 Chr2 27743232 27743231 - TYPEM 227 0.0003 (1/2995) 0 * Os_TE_560478 Os_TE_560380 Chr2 27702130 27702131 + COPIA2-LTR_OS 6433 0.0013 (4/2988) 0 * Os_TE_560379 Os_TE_560379 Chr2 27702126 27702125 - COPIA2-LTR_OS 6433 0.0017 (5/2985) 0 * Os_TE_560380 Os_TE_560375 Chr2 27699698 27699699 - SC-7_LTR 4431 0.0007 (2/2995) 0 * * Os_TE_560358 Chr2 27691833 27691834 - RIREX_LTR 8828 0.0082 (24/2927) 0 * Os_TE_560357 Os_TE_560357 Chr2 27691829 27691828 + RIREX_LTR 8828 0.0078 (23/2937) 0 * Os_TE_560358 Os_TE_560314 Chr2 27665374 27665375 - SC-3_LTR 5748 0.0003 (1/2991) 0 * Os_TE_560313 Os_TE_560313 Chr2 27665370 27665369 + ORSiTERTOOT00296 5553 0.0003 (1/2986) 0 * Os_TE_560314 Os_TE_560304 Chr2 27658103 27658104 - RIRE2_LTR 11306 0.0091 (27/2952) 0 * Os_TE_560303 Os_TE_560303 Chr2 27658099 27658098 + RIRE2_LTR 11306 0.0095 (28/2957) 0 * Os_TE_560304 Os_TE_560235 Chr2 27637058 27637057 - STOWAWAY51_OS 246 0.0003 (1/2995) 0 * * Os_TE_560210 Chr2 27632736 27632737 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_560209 Os_TE_560209 Chr2 27632732 27632731 - COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_560210 Os_TE_560190 Chr2 27628949 27628950 - NDNA2TNA_OS 346 0.6209 (1831/2949) 0 * Os_TE_560189 Os_TE_560189 Chr2 27628947 27628946 + NDNA2TNA_OS 346 0.6121 (1775/2900) 0 * Os_TE_560190 Os_TE_560183 Chr2 27627413 27627412 + ENSPM4_OS 11610 0.6370 (1904/2989) 0 * Os_TE_560182 Os_TE_560182 Chr2 27627412 27627413 - ENSPM4_OS 11610 0.6214 (1802/2900) 0 * Os_TE_560183 Os_TE_560170 Chr2 27624720 27624721 + COPIA2-LTR_OS 6433 0.0037 (11/2959) 0 * Os_TE_560169 Os_TE_560169 Chr2 27624716 27624715 - COPIA2-LTR_OS 6433 0.0037 (11/2956) 0 * Os_TE_560170 Os_TE_560156 Chr2 27622775 27622776 - F569 228 0.0010 (3/2993) 0 * Os_TE_560155 Os_TE_560155 Chr2 27622773 27622772 + F569 228 0.0010 (3/2994) 0 * Os_TE_560156 Os_TE_560127 Chr2 27608330 27608331 + MERMITEA 1710 0.0003 (1/2975) 0 * * Os_TE_560122 Chr2 27606650 27606649 - MERMITE-18 1263 0.0003 (1/2939) 0 * * Os_TE_560115 Chr2 27602036 27602037 + TWIFB1 3737 0.0010 (3/2986) 0 * * Os_TE_560099 Chr2 27587550 27573657 + RETROSAT4_LTR 13504 0.3784 (1072/2833) 1 Intact Os_TE_560093 Os_TE_560093 Chr2 27573657 27577510 - SZ-35LTR 3853 0.3802 (1073/2822) 1 Intact Os_TE_560099 Os_TE_560064 Chr2 27558932 27558933 + STOWAWAY51_OS 246 0.0003 (1/2982) 0 * * Os_TE_560063 Chr2 27558655 27558656 - CENTRE 280 0.0003 (1/2991) 0 * * Os_TE_560058 Chr2 27557868 27557265 - DS-RICE2N 613 0.3518 (1028/2922) 1 Intact Os_TE_560057 Os_TE_560057 Chr2 27557265 27557868 + DS-RICE2N 613 0.3756 (1125/2995) 1 Intact Os_TE_560058 Os_TE_560056 Chr2 27556493 27556494 - ORSgTETNOOT02000 263 0.0007 (2/2937) 0 * Os_TE_560055 Os_TE_560055 Chr2 27556491 27556490 - INDITTO 263 0.0007 (2/2931) 0 * Os_TE_560056 Os_TE_560048 Chr2 27552838 27552839 - COPI2_LTR 4733 0.0003 (1/2998) 0 * * Os_TE_560033 Chr2 27544266 27544267 + ORSiTERTOOT00226 792 0.0003 (1/2995) 0 * Os_TE_560032 Os_TE_560032 Chr2 27544262 27544261 - SZ-22_LTR 4403 0.0003 (1/2988) 0 * Os_TE_560033 Os_TE_560012 Chr2 27537778 27537779 - FOCUS 257 0.0003 (1/2986) 0 * * Os_TE_560006 Chr2 27535154 27535155 - HARB-1_OS 5166 0.0003 (1/2994) 0 * Os_TE_560005 Os_TE_560005 Chr2 27535152 27535151 + HARB-1_OS 5166 0.0003 (1/2989) 0 * Os_TE_560006 Os_TE_560003 Chr2 27534794 27534795 + MPING 430 0.0003 (1/2996) 0 * Os_TE_560002 Os_TE_560002 Chr2 27534792 27534791 - MPING 430 0.0003 (1/2995) 0 * Os_TE_560003 Os_TE_559985 Chr2 27525728 27525727 - WUJI 257 0.0087 (22/2534) 0 * * Os_TE_559942 Chr2 27507801 27507802 - SZ-4_LTR 5991 0.0010 (3/2996) 0 * Os_TE_559941 Os_TE_559941 Chr2 27507797 27507796 + SZ-4_LTR 5991 0.0010 (3/2999) 0 * Os_TE_559942 Os_TE_559895 Chr2 27499157 27499156 + F569 228 0.0081 (24/2945) 0 * * Os_TE_559888 Chr2 27497476 27497477 - COPI2_LTR 4733 0.0010 (3/2940) 0 * Os_TE_559887 Os_TE_559887 Chr2 27497472 27497471 + COPI2_LTR 4733 0.0007 (2/2943) 0 * Os_TE_559888 Os_TE_559847 Chr2 27473464 27473465 - SC-7_LTR 4431 0.0003 (1/2994) 0 * * Os_TE_559787 Chr2 27456533 27456532 - ORSgTERT00200842 1080 0.0003 (1/2874) 0 * * Os_TE_559784 Chr2 27454645 27454644 - COPI2_LTR 4733 0.0003 (1/2981) 0 * * Os_TE_559778 Chr2 27452055 27452056 + NDNA1TNA_OS 334 0.0003 (1/2997) 0 * * Os_TE_559767 Chr2 27448471 27448472 + ORSgTETNOOT01846 238 0.0003 (1/2985) 0 * Os_TE_559766 Os_TE_559766 Chr2 27448470 27448469 + ORSgTETNOOT00792 273 0.0003 (1/2984) 0 * Os_TE_559767 Os_TE_559736 Chr2 27434022 27434023 + RETROSAT4_LTR 13504 0.0076 (22/2899) 0 * Os_TE_559735 Os_TE_559735 Chr2 27434018 27434017 - RETROSAT4_LTR 13504 0.0083 (24/2909) 0 * Os_TE_559736 Os_TE_559711 Chr2 27420693 27420694 - RIREX_LTR 8828 0.0003 (1/2999) 0 * Os_TE_559710 Os_TE_559710 Chr2 27420689 27420688 + RIREX_LTR 8828 0.0003 (1/2998) 0 * Os_TE_559711 Os_TE_559694 Chr2 27413173 27413174 - INDITTO 263 0.0033 (10/2997) 0 * Os_TE_559693 Os_TE_559693 Chr2 27413171 27413170 + INDITTO 263 0.0033 (10/2998) 0 * Os_TE_559694 Os_TE_559690 Chr2 27411576 27411577 + MPING 430 0.0007 (2/2973) 0 * Os_TE_559689 Os_TE_559689 Chr2 27411574 27411573 - MPING 430 0.0007 (2/2973) 0 * Os_TE_559690 Os_TE_559679 Chr2 27406638 27406639 - COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_559678 Os_TE_559678 Chr2 27406634 27406633 - COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_559679 Os_TE_559675 Chr2 27404679 27404680 - COPI2_LTR 4733 0.0003 (1/2965) 0 * * Os_TE_559667 Chr2 27402796 27402795 + CACTA-I 1124 0.0003 (1/2987) 0 * Os_TE_559666 Os_TE_559666 Chr2 27402795 27402796 + ORSgTETN00200005 1121 0.0003 (1/2989) 0 * Os_TE_559667 Os_TE_559606 Chr2 27375056 27375055 - ORSgTEMT01900052 340 0.0007 (2/2995) 0 * * Os_TE_559580 Chr2 27354667 27354668 + ORSiTERTOOT00296 5553 0.0003 (1/2982) 0 * Os_TE_559579 Os_TE_559579 Chr2 27354663 27354662 - SC-3_LTR 5748 0.0003 (1/2984) 0 * Os_TE_559580 Os_TE_559559 Chr2 27348019 27348020 - MPING 430 0.0007 (2/2997) 0 * Os_TE_559558 Os_TE_559558 Chr2 27348017 27348016 + MPING 430 0.0007 (2/2997) 0 * Os_TE_559559 Os_TE_559547 Chr2 27330248 27330247 - ORSgTEMT01400012 212 0.0007 (2/2997) 0 * * Os_TE_559541 Chr2 27325624 27325625 - RIREX_LTR 8828 0.0003 (1/2991) 0 * Os_TE_559540 Os_TE_559540 Chr2 27325620 27325619 + RIREX_LTR 8828 0.0003 (1/2989) 0 * Os_TE_559541 Os_TE_559539 Chr2 27325221 27325222 - COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_559538 Os_TE_559538 Chr2 27325217 27325216 + COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_559539 Os_TE_559510 Chr2 27304387 27304388 - RIREX_LTR 8828 0.0010 (3/2995) 0 * Os_TE_559509 Os_TE_559509 Chr2 27304383 27304382 + RIREX_LTR 8828 0.0010 (3/2995) 0 * Os_TE_559510 Os_TE_559487 Chr2 27295419 27296681 + SZLTR 1249 0.3496 (1023/2926) 1 Intact * Os_TE_559477 Chr2 27282629 27282630 + OSTE33 1012 0.1464 (438/2991) 0 * Os_TE_559476 Os_TE_559476 Chr2 27282622 27282621 + OSTE33 1012 0.1417 (423/2986) 0 * Os_TE_559477 Os_TE_559474 Chr2 27281524 27281525 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * * Os_TE_559466 Chr2 27275743 27275744 + ORSiTERTOOT00296 5553 0.0003 (1/2987) 0 * Os_TE_559465 Os_TE_559465 Chr2 27275739 27275738 - SC-3_LTR 5748 0.0003 (1/2991) 0 * Os_TE_559466 Os_TE_559449 Chr2 27265071 27265072 + RETRO1_LTR 8314 0.0003 (1/2970) 0 * Os_TE_559448 Os_TE_559448 Chr2 27265067 27265066 - RETRO1_LTR 8314 0.0007 (2/2980) 0 * Os_TE_559449 Os_TE_559446 Chr2 27264188 27264189 + MUDRN5_OS 374 0.0194 (58/2992) 0 * Os_TE_559445 Os_TE_559445 Chr2 27264187 27264186 + ORSgTEMT00700017 386 0.0194 (58/2991) 0 * Os_TE_559446 Os_TE_559444 Chr2 27264181 27264182 - ORSgTEMT00700002 381 0.0197 (59/2991) 0 * * Os_TE_559441 Chr2 27261115 27261116 + ORSiTERTOOT00028 8600 0.0078 (23/2962) 0 * Os_TE_559440 Os_TE_559440 Chr2 27261111 27261110 - TRUNCATOR2_LTR 2904 0.0084 (25/2964) 0 * Os_TE_559441 Os_TE_559439 Chr2 27261091 27261092 - TNR2A 152 0.0054 (16/2966) 0 * * Os_TE_559424 Chr2 27256108 27256109 + ORSiCMCM00100019 2717 0.6602 (1955/2961) 0.07 * Os_TE_559423 Os_TE_559423 Chr2 27256104 27256103 - TRUNCATOR2_LTR 2904 0.6677 (1991/2982) 0 * Os_TE_559424 Os_TE_559420 Chr2 27255616 27255617 - SZ-22_LTR 4403 0.0007 (2/2989) 0 * Os_TE_559419 Os_TE_559419 Chr2 27255612 27255611 + ORSiTERTOOT00226 792 0.0007 (2/2989) 0 * Os_TE_559420 Os_TE_559417 Chr2 27254725 27254726 - RETROSAT2LTR 12796 0.1590 (469/2949) 0 * Os_TE_559416 Os_TE_559416 Chr2 27254723 27254722 + RETROSAT2LTR 12796 0.1579 (466/2952) 0 * Os_TE_559417 Os_TE_559415 Chr2 27253282 27253283 + GYPSY-A_LTR 8951 0.0010 (3/2995) 0 * * Os_TE_559408 Chr2 27248360 27248359 - STOWAWAY51_OS 246 0.0003 (1/2992) 0 * * Os_TE_559388 Chr2 27235888 27231944 - SZ-35LTR 3853 0.3537 (1032/2918) 1 Intact Os_TE_559387 Os_TE_559387 Chr2 27231944 27235891 + RETROSAT4_LTR 13504 0.3444 (993/2883) 1 Solo_LTR Os_TE_559388 Os_TE_559351 Chr2 27202665 27202666 + F569 228 0.0007 (2/2993) 0 * Os_TE_559350 Os_TE_559350 Chr2 27202663 27202662 - F569 228 0.0007 (2/2988) 0 * Os_TE_559351 Os_TE_559349 Chr2 27201811 27201812 - COPI2_LTR 4733 0.0003 (1/2988) 0 * * Os_TE_559343 Chr2 27201260 27201261 + INDITTO 263 0.0093 (28/2998) 0 * Os_TE_559342 Os_TE_559342 Chr2 27201258 27201257 - INDITTO 263 0.0083 (25/2995) 0 * Os_TE_559343 Os_TE_559328 Chr2 27198494 27198495 + MPING 430 0.0003 (1/2989) 0 * Os_TE_559327 Os_TE_559327 Chr2 27198492 27198491 - MPING 430 0.0003 (1/2982) 0 * Os_TE_559328 Os_TE_559300 Chr2 27187448 27187447 + STOWAWAY11_OS 292 0.0010 (3/2928) 0 * * Os_TE_559290 Chr2 27186648 27186649 + COPI2_LTR 4733 0.0003 (1/2992) 0 * Os_TE_559289 Os_TE_559289 Chr2 27186644 27186643 - COPI2_LTR 4733 0.0003 (1/2991) 0 * Os_TE_559290 Os_TE_559288 Chr2 27186532 27186533 + COPI2_LTR 4733 0.0067 (20/2996) 0 * Os_TE_559287 Os_TE_559287 Chr2 27186528 27186527 - COPI2_LTR 4733 0.0067 (20/2997) 0 * Os_TE_559288 Os_TE_559274 Chr2 27181559 27181560 - COPIA2-LTR_OS 6433 0.0013 (4/2995) 0 * Os_TE_559273 Os_TE_559273 Chr2 27181555 27181554 + COPIA2-LTR_OS 6433 0.0013 (4/2990) 0 * Os_TE_559274 Os_TE_559271 Chr2 27180046 27180045 + OSTE18 129 0.0017 (5/2992) 0 * * Os_TE_559259 Chr2 27178456 27178457 + SZ-40LTR 2465 0.0010 (3/2994) 0 * Os_TE_559258 Os_TE_559258 Chr2 27178452 27178451 - SZ-40LTR 2465 0.0010 (3/2995) 0 * Os_TE_559259 Os_TE_559223 Chr2 27166473 27166474 - COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_559222 Os_TE_559222 Chr2 27166469 27166468 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_559223 Os_TE_559187 Chr2 27158358 27158359 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_559186 Os_TE_559186 Chr2 27158354 27158353 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_559187 Os_TE_559173 Chr2 27154137 27154138 - ORSgTEMT01400019 216 0.0094 (10/1064) 0 * * Os_TE_559154 Chr2 27151616 27151615 - SZ-35LTR 3853 0.6048 (1749/2892) 0 * * Os_TE_559145 Chr2 27148025 27148026 + MPING 430 0.0004 (1/2592) 0 * Os_TE_559144 Os_TE_559144 Chr2 27148023 27148022 - MPING 430 0.0004 (1/2550) 0 * Os_TE_559145 Os_TE_559135 Chr2 27146016 27146015 + ORSgTEMT00700017 386 0.0013 (4/2973) 0 * Os_TE_559134 Os_TE_559134 Chr2 27146007 27146008 + ORSgTEMT00700017 386 0.0003 (1/2988) 0 * Os_TE_559135 Os_TE_559132 Chr2 27144821 27144822 + COPI2_LTR 4733 0.0003 (1/2992) 0 * Os_TE_559131 Os_TE_559131 Chr2 27144817 27144816 - COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_559132 Os_TE_559127 Chr2 27143571 27143570 - DS-RICE2N 613 0.0003 (1/2975) 0 * * Os_TE_559098 Chr2 27130349 27130350 + DS-RICE2N 613 0.2844 (511/1797) 0 * * Os_TE_559095 Chr2 27128035 27128036 + OSTE20 496 0.0004 (1/2404) 0 * * Os_TE_559062 Chr2 27109436 27109437 - ORSgTETNOOT02565 240 0.0003 (1/2999) 0 * * Os_TE_559061 Chr2 27108935 27108934 + ORSgTETNOOT00908 242 0.0003 (1/2999) 0 * * Os_TE_559060 Chr2 27108774 27108775 - INDITTO 263 0.0017 (5/2997) 0 * Os_TE_559059 Os_TE_559059 Chr2 27108772 27108771 + INDITTO 263 0.0017 (5/2999) 0 * Os_TE_559060 Os_TE_559051 Chr2 27106463 27106462 - STOWAWAY51_OS 246 0.0007 (2/2998) 0 * Os_TE_559050 Os_TE_559050 Chr2 27106457 27106458 + STOWAWAY51_OS 246 0.0007 (2/2998) 0 * Os_TE_559051 Os_TE_559041 Chr2 27098650 27098649 - STOWAWAY51_OS 246 0.0003 (1/2987) 0 * * Os_TE_559040 Chr2 27097739 27097738 + STOWAWAY44_OS 240 0.0003 (1/2995) 0 * * Os_TE_559034 Chr2 27093596 27093595 + NDNA1TNA_OS 334 0.0007 (2/2952) 0 * * Os_TE_559028 Chr2 27089049 27089048 - SZ-48LTR 3632 0.6689 (1998/2987) 0 * * Os_TE_559019 Chr2 27084007 27084006 + STOWAWAY51_OS 246 0.0007 (2/2989) 0 * Os_TE_559018 Os_TE_559018 Chr2 27084001 27084002 + ORSgTEMT01601591 242 0.0007 (2/2992) 0 * Os_TE_559019 Os_TE_558986 Chr2 27068569 27068570 + ORSiTERTOOT00033 4884 0.0003 (1/2978) 0 * Os_TE_558985 Os_TE_558985 Chr2 27068566 27068565 - RETROFIT_LTR 4866 0.0003 (1/2981) 0 * Os_TE_558986 Os_TE_558974 Chr2 27062499 27062500 - MPING 430 0.0143 (43/2999) 0 * Os_TE_558973 Os_TE_558973 Chr2 27062497 27062496 + MPING 430 0.0143 (43/2998) 0 * Os_TE_558974 Os_TE_558944 Chr2 27043150 27043151 + NDNA1TNA_OS 334 0.0271 (78/2882) 0 * * Os_TE_558917 Chr2 27033681 27033682 - SC-3_LTR 5748 0.0003 (1/2996) 0 * Os_TE_558916 Os_TE_558916 Chr2 27033677 27033676 + ORSiTERTOOT00296 5553 0.0003 (1/2996) 0 * Os_TE_558917 Os_TE_558910 Chr2 27030257 27030258 - AMYLTP 383 0.0017 (5/2988) 0 * Os_TE_558909 Os_TE_558909 Chr2 27030249 27030248 + AMYLTP 383 0.0017 (5/2988) 0 * Os_TE_558910 Os_TE_558890 Chr2 27022642 27022643 - STOWAWAY51_OS 246 0.0003 (1/2999) 0 * * Os_TE_558885 Chr2 27018023 27018024 - INDITTO 263 0.0003 (1/2992) 0 * Os_TE_558884 Os_TE_558884 Chr2 27018021 27018020 + INDITTO 263 0.0003 (1/2993) 0 * Os_TE_558885 Os_TE_558870 Chr2 27016086 27016087 - SZ-22_LTR 4403 0.0010 (3/2989) 0 * Os_TE_558869 Os_TE_558869 Chr2 27016082 27016081 + ORSiTERTOOT00226 792 0.0010 (3/2988) 0 * Os_TE_558870 Os_TE_558776 Chr2 26968277 26968278 - ORSgTEMT02400179 221 0.0010 (3/2970) 0 * Os_TE_558775 Os_TE_558775 Chr2 26968276 26968275 - TYPEM 227 0.0010 (3/2970) 0 * Os_TE_558776 Os_TE_558770 Chr2 26964847 26964848 - SC-8_LTR 4951 0.0003 (1/2982) 0 * Os_TE_558769 Os_TE_558769 Chr2 26964843 26964842 + SC-8_LTR 4951 0.0003 (1/2981) 0 * Os_TE_558770 Os_TE_558752 Chr2 26952376 26952375 - TELIA 141 0.0004 (1/2844) 0 * * Os_TE_558737 Chr2 26941627 26941628 + ORSiTERTOOT00296 5553 0.0010 (3/2982) 0 * Os_TE_558736 Os_TE_558736 Chr2 26941623 26941622 - SC-3_LTR 5748 0.0017 (5/2984) 0 * Os_TE_558737 Os_TE_558720 Chr2 26929411 26929410 + ORSgTETNOOT00032 218 0.6555 (1920/2929) 0 * * Os_TE_558694 Chr2 26917159 26909697 + RIREX_LTR 8828 0.3419 (1024/2995) 1 Intact Os_TE_558691 Os_TE_558691 Chr2 26909697 26917159 - RIREX_LTR 8828 0.3406 (1021/2998) 1 Intact Os_TE_558694 Os_TE_558685 Chr2 26906129 26906130 + ORSiCMCM00100019 2717 0.0003 (1/2990) 0 * Os_TE_558684 Os_TE_558684 Chr2 26906125 26906124 - TRUNCATOR2_LTR 2904 0.0003 (1/2985) 0 * Os_TE_558685 Os_TE_558674 Chr2 26901237 26886591 + MERMITEA 1710 0.3733 (1114/2984) 1 Intact Os_TE_558663 Os_TE_558663 Chr2 26886591 26901237 - MERMITEA 1710 0.3660 (1083/2959) 1 Intact Os_TE_558674 Os_TE_558634 Chr2 26862723 26862724 - LINE-4_OS 3662 0.0003 (1/2997) 0 * * Os_TE_558632 Chr2 26861818 26861819 - KIDDOC 275 0.0003 (1/2994) 0 * * Os_TE_558631 Chr2 26860574 26860573 + ORSgTEMT01601591 242 0.0003 (1/2976) 0 * * Os_TE_558610 Chr2 26848989 26848990 - RIREX_LTR 8828 0.0566 (168/2969) 0 * Os_TE_558609 Os_TE_558609 Chr2 26848985 26848984 + RIREX_LTR 8828 0.0563 (167/2964) 0 * Os_TE_558610 Os_TE_558597 Chr2 26847114 26847115 + OSTE33 1012 0.6108 (1806/2957) 0 * Os_TE_558596 Os_TE_558596 Chr2 26847105 26847104 + OSTE33 1012 0.6125 (1819/2970) 0 * Os_TE_558597 Os_TE_558583 Chr2 26841229 26841230 + MPING 430 0.0003 (1/2978) 0 * Os_TE_558582 Os_TE_558582 Chr2 26841227 26841226 - MPING 430 0.0003 (1/2973) 0 * Os_TE_558583 Os_TE_558578 Chr2 26840288 26836699 + SZ-62LTR 3649 0.8788 (1160/1320) 1 Intact * Os_TE_558555 Chr2 26832703 26832702 + ORSgTEMT02400041 225 0.0003 (1/2986) 0 * Os_TE_558554 Os_TE_558554 Chr2 26832699 26832700 - ORSgTEMT02400246 177 0.0003 (1/2990) 0 * Os_TE_558555 Os_TE_558505 Chr2 26809116 26809117 + ORSgTETNOOT00908 242 0.0003 (1/2973) 0 * * Os_TE_558477 Chr2 26800845 26800844 + TOS17LTR 138 0.0003 (1/2998) 0 * * Os_TE_558473 Chr2 26796460 26796461 + INDITTO 263 0.0003 (1/2995) 0 * Os_TE_558472 Os_TE_558472 Chr2 26796458 26796457 - INDITTO 263 0.0003 (1/2993) 0 * Os_TE_558473 Os_TE_558456 Chr2 26794090 26794089 + CACTA-M 1129 0.1303 (390/2993) 0 * * Os_TE_558437 Chr2 26785474 26785473 + COPI2_LTR 4733 0.0003 (1/2997) 0 * * Os_TE_558414 Chr2 26777551 26777552 - SC-8_LTR 4951 0.0004 (1/2595) 0 * Os_TE_558413 Os_TE_558413 Chr2 26777547 26777546 + ORSiTERTOOT00381 4988 0.0004 (1/2592) 0 * Os_TE_558414 Os_TE_558392 Chr2 26770580 26770581 + TOS17LTR 138 0.0003 (1/2993) 0 * * Os_TE_558387 Chr2 26767766 26767767 + ORSgTETNOOT00221 261 0.0027 (8/2993) 0 * * Os_TE_558361 Chr2 26760972 26760971 - SZ-22_LTR 4403 0.0007 (2/2813) 0 * * Os_TE_558358 Chr2 26759756 26759755 + RIRE3A_LTR 10580 0.0003 (1/3000) 0 * * Os_TE_558252 Chr2 26711771 26711772 - MPING 430 0.0027 (8/2989) 0 * * Os_TE_558200 Chr2 26697859 26697858 - HARB-1_OS 5166 0.0003 (1/2981) 0 * * Os_TE_558198 Chr2 26697767 26697768 + ORSgTEMT01601591 242 0.0003 (1/2974) 0 * * Os_TE_558166 Chr2 26686184 26686185 - GYPSY-A_LTR 8951 0.0003 (1/2996) 0 * Os_TE_558165 Os_TE_558165 Chr2 26686180 26686179 + GYPSY-A_LTR 8951 0.0003 (1/2996) 0 * Os_TE_558166 Os_TE_558156 Chr2 26678325 26678326 + MPING 430 0.0003 (1/2977) 0 * Os_TE_558155 Os_TE_558155 Chr2 26678323 26678322 - MPING 430 0.0003 (1/2980) 0 * Os_TE_558156 Os_TE_558111 Chr2 26660911 26660912 + COPIA2-LTR_OS 6433 0.0104 (31/2980) 0 * Os_TE_558110 Os_TE_558110 Chr2 26660907 26660906 - COPIA2-LTR_OS 6433 0.0107 (32/2979) 0 * Os_TE_558111 Os_TE_558095 Chr2 26654931 26654932 + COPIA2-LTR_OS 6433 0.0003 (1/2958) 0 * * Os_TE_558077 Chr2 26647585 26647586 - COPI2_LTR 4733 0.0003 (1/2891) 0 * Os_TE_558076 Os_TE_558076 Chr2 26647581 26647580 + COPI2_LTR 4733 0.0003 (1/2874) 0 * Os_TE_558077 Os_TE_558074 Chr2 26646043 26646044 + INDITTO 263 0.0010 (3/2996) 0 * Os_TE_558073 Os_TE_558073 Chr2 26646041 26646040 - INDITTO 263 0.0010 (3/2995) 0 * Os_TE_558074 Os_TE_558070 Chr2 26645461 26645462 - COPIA2-LTR_OS 6433 0.0003 (1/2979) 0 * * Os_TE_558063 Chr2 26637935 26634045 + RETROSAT4_LTR 13504 0.3870 (1151/2974) 1 Solo_LTR * Os_TE_558046 Chr2 26622911 26622912 + SZ-55_LTR 10318 0.0007 (2/2997) 0 * Os_TE_558045 Os_TE_558045 Chr2 26622907 26622906 - SZ-55_LTR 10318 0.0003 (1/2992) 0 * Os_TE_558046 Os_TE_558044 Chr2 26622526 26622525 - STOWAWAY51_OS 246 0.0007 (2/2988) 0 * Os_TE_558043 Os_TE_558043 Chr2 26622523 26622524 - STOWAWAY51_OS 246 0.0010 (3/2990) 0 * Os_TE_558044 Os_TE_558037 Chr2 26617347 26617348 - RIREX_LTR 8828 0.0003 (1/2995) 0 * Os_TE_558036 Os_TE_558036 Chr2 26617343 26617342 + RIREX_LTR 8828 0.0003 (1/2993) 0 * Os_TE_558037 Os_TE_558034 Chr2 26616502 26616503 - COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_558033 Os_TE_558033 Chr2 26616498 26616497 + COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_558034 Os_TE_558030 Chr2 26615440 26615441 - COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_558029 Os_TE_558029 Chr2 26615436 26615435 + COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_558030 Os_TE_558017 Chr2 26609621 26609622 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_558016 Os_TE_558016 Chr2 26609617 26609616 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_558017 Os_TE_557978 Chr2 26580320 26580321 + STOWAWAY51_OS 246 0.0107 (32/2991) 0 * * Os_TE_557977 Chr2 26580131 26580132 + TEMPINDAS 4259 0.0007 (2/2993) 0 * Os_TE_557976 Os_TE_557976 Chr2 26580124 26580123 - TEMPINDAS 4259 0.0007 (2/2992) 0 * Os_TE_557977 Os_TE_557975 Chr2 26579482 26579481 + STOWAWAY51_OS 246 0.0107 (32/2993) 0 * * Os_TE_557974 Chr2 26579476 26579477 - STOWAWAY51_OS 246 0.0104 (31/2988) 0 * Os_TE_557973 Os_TE_557973 Chr2 26579473 26579472 + ORSgTEMT01600726 235 0.0104 (31/2993) 0 * Os_TE_557974 Os_TE_557967 Chr2 26576864 26576863 - STOWAWAY44_OS 240 0.0004 (1/2693) -1 * Os_TE_557966 Os_TE_557966 Chr2 26576861 26576862 - STOWAWAY44_OS 240 0.0004 (1/2659) 0 * Os_TE_557967 Os_TE_557959 Chr2 26573477 26573478 + TWIF 586 0.0003 (1/2994) 0 * Os_TE_557958 Os_TE_557958 Chr2 26573470 26573469 - ORSiTETNOOT00134 607 0.0003 (1/2995) 0 * Os_TE_557959 Os_TE_557954 Chr2 26571502 26571503 - ORSiTERTOOT00367 5639 0.0003 (1/2971) 0 * Os_TE_557953 Os_TE_557953 Chr2 26571498 26571497 + ORSiTERTOOT00367 5639 0.0003 (1/2977) 0 * Os_TE_557954 Os_TE_557947 Chr2 26570817 26568502 - MuDR4_OS 7610 0.3776 (1127/2985) 1 Intact Os_TE_557946 Os_TE_557946 Chr2 26568501 26570816 + MuDR4_OS 7610 0.3786 (1130/2985) 1 Intact Os_TE_557947 Os_TE_557933 Chr2 26560141 26560142 - MPING 430 0.0003 (1/2991) 0 * Os_TE_557932 Os_TE_557932 Chr2 26560139 26560138 + MPING 430 0.0003 (1/2994) 0 * Os_TE_557933 Os_TE_557926 Chr2 26558872 26558871 - ORSgTEMT01602292 239 0.1242 (372/2996) 0 * * Os_TE_557925 Chr2 26558869 26558870 + ORSgTEMT01602609 233 0.1212 (363/2994) 0 * Os_TE_557924 Os_TE_557924 Chr2 26558866 26558865 + ORSgTEMT01601934 207 0.1238 (371/2996) 0 * Os_TE_557925 Os_TE_557877 Chr2 26538848 26538847 - ORSgTEMT02400246 177 0.0007 (2/2953) 0 * Os_TE_557876 Os_TE_557876 Chr2 26538847 26538848 - TYPEM 227 0.0007 (2/2959) 0 * Os_TE_557877 Os_TE_557868 Chr2 26537562 26537563 + RIREX_LTR 8828 0.0020 (6/2996) 0 * Os_TE_557867 Os_TE_557867 Chr2 26537558 26537557 - RIREX_LTR 8828 0.0020 (6/2997) 0 * Os_TE_557868 Os_TE_557855 Chr2 26535986 26535987 - MPING 430 0.0010 (3/2929) 0 * Os_TE_557854 Os_TE_557854 Chr2 26535984 26535983 + MPING 430 0.0010 (3/2922) 0 * Os_TE_557855 Os_TE_557843 Chr2 26532718 26532719 + RIRE3_LTR 12054 0.0003 (1/2910) 0 * Os_TE_557842 Os_TE_557842 Chr2 26532714 26532713 - RIRE3_LTR 12054 0.0003 (1/2912) 0 * Os_TE_557843 Os_TE_557833 Chr2 26529252 26529253 + RIRE2_LTR 11306 0.0007 (2/2994) 0 * Os_TE_557832 Os_TE_557832 Chr2 26529248 26529247 - RIRE2_LTR 11306 0.0007 (2/2993) 0 * Os_TE_557833 Os_TE_557822 Chr2 26524332 26524333 - ORSgTEMT00100583 156 0.0021 (6/2895) 0 * * Os_TE_557782 Chr2 26504212 26504315 - OSTE18 129 0.4748 (1421/2993) 1 Intact * Os_TE_557780 Chr2 26504094 26504093 + STOWAWAY51_OS 246 0.0064 (19/2973) 0 * Os_TE_557779 Os_TE_557779 Chr2 26504088 26504089 + ORSgTEMT01601591 242 0.0074 (22/2989) 0 * Os_TE_557780 Os_TE_557766 Chr2 26498160 26498161 + COPIA2-LTR_OS 6433 0.0027 (4/1455) 0 * * Os_TE_557763 Chr2 26497702 26497701 + HARB-1_OS 5166 0.0003 (1/2999) 0 * * Os_TE_557762 Chr2 26494504 26494505 - SC-3_LTR 5748 0.0003 (1/2990) 0 * Os_TE_557761 Os_TE_557761 Chr2 26494500 26494499 + ORSiTERTOOT00296 5553 0.0003 (1/2991) 0 * Os_TE_557762 Os_TE_557755 Chr2 26493621 26493620 - STOWAWAY51_OS 246 0.0007 (2/2996) 0 * * Os_TE_557738 Chr2 26487347 26487348 + TWIF 586 0.0003 (1/2969) 0 * Os_TE_557737 Os_TE_557737 Chr2 26487340 26487339 - ORSiTETNOOT00134 607 0.0004 (1/2686) 0 * Os_TE_557738 Os_TE_557716 Chr2 26482682 26482683 + HARB-1_OS 5166 0.0024 (7/2954) 0 * Os_TE_557715 Os_TE_557715 Chr2 26482680 26482679 - HARB-1_OS 5166 0.0027 (8/2958) 0 * Os_TE_557716 Os_TE_557685 Chr2 26463161 26463162 + INDITTO 263 0.0029 (8/2782) 0 * Os_TE_557684 Os_TE_557684 Chr2 26463159 26463158 - INDITTO 263 0.0029 (8/2778) -1 * Os_TE_557685 Os_TE_557651 Chr2 26452304 26452303 - SZ-5LTR 1223 0.0003 (1/2976) 0 * * Os_TE_557650 Chr2 26451978 26451977 - ORSgTEMT00901723 248 0.0010 (3/2980) 0 * Os_TE_557649 Os_TE_557649 Chr2 26451974 26451975 - ORSgTEMT00900099 250 0.0017 (5/2977) 0 * Os_TE_557650 Os_TE_557621 Chr2 26446445 26446446 + INDITTO 263 0.0007 (2/2994) 0 * Os_TE_557620 Os_TE_557620 Chr2 26446443 26446442 - INDITTO 263 0.0007 (2/2992) 0 * Os_TE_557621 Os_TE_557603 Chr2 26438652 26425612 - RETROSAT4_LTR 13504 0.3533 (1045/2958) 1 Intact Os_TE_557594 Os_TE_557594 Chr2 26425612 26438652 + RETROSAT4_LTR 13504 0.3197 (909/2843) 1 Intact Os_TE_557603 Os_TE_557584 Chr2 26420417 26420416 - COPI2_LTR 4733 0.0014 (4/2937) 0 * * Os_TE_557582 Chr2 26420250 26420249 + SZ-62LTR 3649 0.1004 (295/2937) 0 * * Os_TE_557565 Chr2 26413004 26413005 + CACTA-M 1129 0.0090 (27/2997) 0 * Os_TE_557564 Os_TE_557564 Chr2 26413002 26413001 - ORSgTETN00200001 10994 0.0083 (25/2997) 0 * Os_TE_557565 Os_TE_557558 Chr2 26408143 26408142 + ORSiTERTOOT00296 5553 0.0003 (1/2995) 0 * * Os_TE_557556 Chr2 26407489 26407490 - SC-3_LTR 5748 0.0017 (5/2994) 0 * Os_TE_557555 Os_TE_557555 Chr2 26407485 26407484 + ORSiTERTOOT00296 5553 0.0017 (5/2992) 0 * Os_TE_557556 Os_TE_557552 Chr2 26406239 26406240 - STOWAWAY1_OS 149 0.0003 (1/2986) 0 * * Os_TE_557547 Chr2 26404575 26404202 + ORSgTEMT00700017 386 0.6610 (1119/1693) 0.8 Intact * Os_TE_557534 Chr2 26399153 26399154 - SC-3_LTR 5748 0.0003 (1/2985) 0 * Os_TE_557533 Os_TE_557533 Chr2 26399149 26399148 + ORSiTERTOOT00296 5553 0.0003 (1/2982) 0 * Os_TE_557534 Os_TE_557504 Chr2 26374998 26374997 - F770 284 0.0020 (6/2995) 0 * * Os_TE_557471 Chr2 26370073 26370074 + SC-8_LTR 4951 0.0003 (1/2994) 0 * * Os_TE_557452 Chr2 26359548 26355527 + RETROSAT4_LTR 13504 0.2227 (340/1527) -1 Solo_LTR * Os_TE_557441 Chr2 26349946 26349947 - STOWAWAY34_OS 256 0.0302 (90/2984) 0 * * Os_TE_557440 Chr2 26348692 26348693 - ORSiTETNOOT00156 3648 0.0011 (3/2828) 0 * * Os_TE_557414 Chr2 26344402 26344403 + ORSgTETNOOT00908 242 0.0010 (3/2980) 0 * * Os_TE_557408 Chr2 26341533 26341534 - MPING 430 0.0020 (6/2992) 0 * Os_TE_557407 Os_TE_557407 Chr2 26341531 26341530 + MPING 430 0.0020 (6/2989) 0 * Os_TE_557408 Os_TE_557401 Chr2 26340851 26340850 + STOWAWAY51_OS 246 0.0003 (1/2987) 0 * * Os_TE_557384 Chr2 26330987 26330986 + RETRO1_LTR 8314 0.0003 (1/2989) 0 * * Os_TE_557372 Chr2 26326743 26326744 + RIRE2_LTR 11306 0.0003 (1/2995) 0 * Os_TE_557371 Os_TE_557371 Chr2 26326739 26326738 - RIRE2_LTR 11306 0.0003 (1/2994) 0 * Os_TE_557372 Os_TE_557370 Chr2 26325561 26325562 - SZ-55_LTR 10318 0.0003 (1/2999) 0 * Os_TE_557369 Os_TE_557369 Chr2 26325557 26325556 + SZ-55_LTR 10318 0.0003 (1/2999) 0 * Os_TE_557370 Os_TE_557346 Chr2 26314321 26314320 + DS-RICE4N 715 0.0007 (2/2986) 0 * * Os_TE_557327 Chr2 26309944 26310184 + ORSgTETNOOT00908 242 0.6226 (1844/2962) 1 Intact * Os_TE_557322 Chr2 26307018 26307019 + COPI2_LTR 4733 0.0003 (1/2978) 0 * * Os_TE_557316 Chr2 26304945 26304946 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_557315 Os_TE_557315 Chr2 26304941 26304940 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_557316 Os_TE_557308 Chr2 26304399 26304400 - NDNA2TNA_OS 346 0.0017 (5/2991) 0 * Os_TE_557307 Os_TE_557307 Chr2 26304398 26304397 + NDNA2TNA_OS 346 0.0017 (5/2993) 0 * Os_TE_557308 Os_TE_557305 Chr2 26303704 26303705 - GYPSY1-LTR_OS 8900 0.0003 (1/2988) 0 * * Os_TE_557296 Chr2 26292203 26292204 + INDITTO 263 0.0517 (155/2999) 0 * Os_TE_557295 Os_TE_557295 Chr2 26292201 26292200 - INDITTO 263 0.0517 (154/2978) 0 * Os_TE_557296 Os_TE_557294 Chr2 26291328 26291329 - COPIA2-LTR_OS 6433 0.0004 (1/2758) 0 * * Os_TE_557289 Chr2 26289302 26289303 - INDITTO 263 0.0073 (22/2996) 0 * Os_TE_557288 Os_TE_557288 Chr2 26289300 26289299 + INDITTO 263 0.0073 (22/2996) 0 * Os_TE_557289 Os_TE_557287 Chr2 26288992 26288993 + MDR2 6967 0.0003 (1/2994) 0 * Os_TE_557286 Os_TE_557286 Chr2 26288984 26288983 - MDR2 6967 0.0003 (1/2995) 0 * Os_TE_557287 Os_TE_557260 Chr2 26282646 26282645 + ORSiTETNOOT00107 906 0.0014 (4/2959) 0 * Os_TE_557259 Os_TE_557259 Chr2 26282642 26282643 - ORSiTETNOOT00107 906 0.0014 (4/2943) 0 * Os_TE_557260 Os_TE_557254 Chr2 26280744 26280745 - AMYLTP 383 0.2375 (710/2989) 0 * * Os_TE_557251 Chr2 26280482 26280481 - ORSgTEMT01700299 212 0.3342 (1000/2992) 0.93 * * Os_TE_557239 Chr2 26279596 26279597 + CACTA-B 1103 0.0014 (4/2926) 0 * * Os_TE_557226 Chr2 26275366 26275367 - FOCUS 257 0.0040 (12/2990) 0 * Os_TE_557225 Os_TE_557225 Chr2 26275364 26275363 + FOCUS 257 0.0044 (13/2988) 0 * Os_TE_557226 Os_TE_557220 Chr2 26271235 26271236 + COPI2_LTR 4733 0.0023 (7/2997) 0 * Os_TE_557219 Os_TE_557219 Chr2 26271231 26271230 - COPI2_LTR 4733 0.0023 (7/2999) 0 * Os_TE_557220 Os_TE_557218 Chr2 26270904 26270905 + ORSgTETNOOT02316 263 0.0010 (3/2997) 0 * * Os_TE_557216 Chr2 26270749 26270750 - MPING 430 0.0064 (19/2991) 0 * Os_TE_557215 Os_TE_557215 Chr2 26270747 26270746 + MPING 430 0.0063 (19/2994) 0 * Os_TE_557216 Os_TE_557203 Chr2 26267798 26267799 + ORSgTERTOOT00009 12852 0.0132 (39/2958) 0 * * Os_TE_557194 Chr2 26266525 26266526 + RIREX_LTR 8828 0.0003 (1/2977) 0 * Os_TE_557193 Os_TE_557193 Chr2 26266521 26266520 - RIREX_LTR 8828 0.0003 (1/2973) 0 * Os_TE_557194 Os_TE_557191 Chr2 26265703 26265704 + HARB-1_OS 5166 0.0027 (8/2988) 0 * Os_TE_557190 Os_TE_557190 Chr2 26265701 26265700 - HARB-1_OS 5166 0.0027 (8/2982) 0 * Os_TE_557191 Os_TE_557188 Chr2 26265050 26265049 + ORSiTERTOOT00296 5553 0.0107 (32/2986) 0 * * Os_TE_557184 Chr2 26262118 26262117 + TRUNCATOR 2918 0.1467 (65/443) -1 * * Os_TE_557177 Chr2 26260605 26260606 + RETROSAT2LTR 12796 0.0056 (15/2683) 0 * Os_TE_557176 Os_TE_557176 Chr2 26260603 26260602 - RETROSAT2LTR 12796 0.0062 (17/2725) 0 * Os_TE_557177 Os_TE_557141 Chr2 26248548 26248549 + ORSgTETNOOT00908 242 0.0003 (1/2992) 0 * * Os_TE_557123 Chr2 26239989 26239990 - ORSiTERTOOT00333 4719 0.0007 (2/2989) 0 * Os_TE_557122 Os_TE_557122 Chr2 26239986 26239985 + ORSiTERTOOT00333 4719 0.0007 (2/2989) 0 * Os_TE_557123 Os_TE_557111 Chr2 26232455 26232454 - ORSgTEMT00901300 218 0.0003 (1/2896) 0 * * Os_TE_557101 Chr2 26230196 26217299 + RETROSAT4_LTR 13504 0.3082 (887/2878) 1 Intact Os_TE_557092 Os_TE_557092 Chr2 26217299 26230196 - RETROSAT4_LTR 13504 0.3107 (894/2877) 1 Intact Os_TE_557101 Os_TE_557076 Chr2 26213172 26213171 + COPIA2-LTR_OS 6433 0.0003 (1/2979) 0 * * Os_TE_557068 Chr2 26207725 26207726 + SC-8_LTR 4951 0.4493 (1346/2996) 0 * Os_TE_557067 Os_TE_557067 Chr2 26207721 26207720 - SC-8_LTR 4951 0.4486 (1345/2998) 0 * Os_TE_557068 Os_TE_557041 Chr2 26194765 26194764 - TRUNCATOR 2918 0.0014 (4/2878) 0 * Os_TE_557040 Os_TE_557040 Chr2 26194764 26194765 + TRUNCATOR 2918 0.0017 (5/2879) 0 * Os_TE_557041 Os_TE_557012 Chr2 26176245 26176246 + SZ-COM 1308 0.0017 (5/2868) 0 * * Os_TE_557011 Chr2 26175585 26175584 - AMYLTP 383 0.0477 (141/2956) 0 * * Os_TE_556988 Chr2 26167629 26167630 + ORSiTERTOOT00097 759 0.6787 (2017/2972) 0 * Os_TE_556987 Os_TE_556987 Chr2 26167625 26167624 - SZ-22_LTR 4403 0.6717 (1993/2967) 0 * Os_TE_556988 Os_TE_556957 Chr2 26151413 26151414 + ORSiTERTOOT00296 5553 0.0015 (1/687) 0 * Os_TE_556956 Os_TE_556956 Chr2 26151409 26151408 - SC-3_LTR 5748 0.0014 (1/722) 0 * Os_TE_556957 Os_TE_556933 Chr2 26142292 26142291 + TWIFBIG 3567 0.0007 (2/2985) 0 * * Os_TE_556931 Chr2 26142214 26142215 - TYPEM 227 0.0866 (251/2898) 0 * Os_TE_556930 Os_TE_556930 Chr2 26142213 26142212 - ORSgTEMT02400179 221 0.0867 (252/2906) 0 * Os_TE_556931 Os_TE_556895 Chr2 26131980 26131979 + SPMLIKE 10989 0.0003 (1/2991) 0 * * Os_TE_556854 Chr2 26121156 26121157 + MUDRN2_OS 756 0.0487 (145/2980) 0 * Os_TE_556853 Os_TE_556853 Chr2 26121148 26121147 - MUDRN3_OS 903 0.0477 (142/2976) 0 * Os_TE_556854 Os_TE_556826 Chr2 26111461 26111462 + ORSiTERTOOT00028 8600 0.0107 (32/2997) 0 * Os_TE_556825 Os_TE_556825 Chr2 26111457 26111456 - TRUNCATOR2_LTR 2904 0.0120 (36/2999) 0 * Os_TE_556826 Os_TE_556820 Chr2 26107807 26107806 - STOWAWAY51_OS 246 0.0013 (4/2998) 0 * Os_TE_556819 Os_TE_556819 Chr2 26107804 26107805 - STOWAWAY51_OS 246 0.0013 (4/2994) 0 * Os_TE_556820 Os_TE_556818 Chr2 26107796 26107797 + INDITTO 263 0.0003 (1/2996) 0 * Os_TE_556817 Os_TE_556817 Chr2 26107794 26107793 - INDITTO 263 0.0003 (1/2991) 0 * Os_TE_556818 Os_TE_556810 Chr2 26106520 26106519 - F569 228 0.0114 (34/2973) 0 * * Os_TE_556800 Chr2 26101977 26101976 - STOWAWAY51_OS 246 0.0003 (1/2991) 0 * Os_TE_556799 Os_TE_556799 Chr2 26101971 26101972 + STOWAWAY51_OS 246 0.0003 (1/2990) 0 * Os_TE_556800 Os_TE_556787 Chr2 26095413 26095414 - RIREX_LTR 8828 0.0519 (155/2986) 0 * Os_TE_556786 Os_TE_556786 Chr2 26095409 26095408 + RIREX_LTR 8828 0.0532 (159/2988) 0 * Os_TE_556787 Os_TE_556729 Chr2 26078716 26078717 - ORSgTEMT00600304 361 0.0014 (4/2895) 0 * Os_TE_556728 Os_TE_556728 Chr2 26078713 26078712 - CASTAWAY 364 0.0014 (4/2930) 0 * Os_TE_556729 Os_TE_556713 Chr2 26074326 26074327 - MPING 430 0.0003 (1/2947) 0 * Os_TE_556712 Os_TE_556712 Chr2 26074324 26074323 + MPING 430 0.0003 (1/2954) 0 * Os_TE_556713 Os_TE_556659 Chr2 26055472 26055471 + TRUNCATOR 2918 0.0117 (35/2991) 0 * * Os_TE_556648 Chr2 26054605 26054606 + ORSgTETNOOT00908 242 0.0125 (37/2967) 0 * * Os_TE_556647 Chr2 26054467 26054468 + COPI2_LTR 4733 0.0003 (1/2978) 0 * Os_TE_556646 Os_TE_556646 Chr2 26054463 26054462 - COPI2_LTR 4733 0.0003 (1/2977) 0 * Os_TE_556647 Os_TE_556620 Chr2 26046927 26046928 + RIREX_LTR 8828 0.0218 (65/2975) 0 * Os_TE_556619 Os_TE_556619 Chr2 26046923 26046922 - RIREX_LTR 8828 0.0212 (63/2978) 0 * Os_TE_556620 Os_TE_556600 Chr2 26039498 26039497 + OsSN3 183 0.1614 (478/2961) 0 * Os_TE_556599 Os_TE_556599 Chr2 26039468 26039469 - OsSN3 183 0.1694 (501/2958) 0 * Os_TE_556600 Os_TE_556567 Chr2 26030236 26030235 - COPI2_LTR 4733 0.0023 (7/2991) 0 * * Os_TE_556564 Chr2 26027180 26027179 - ORSgTETN00200001 10994 0.0003 (1/2989) 0 * Os_TE_556563 Os_TE_556563 Chr2 26027179 26027180 + CACTA-B 1103 0.0003 (1/2991) 0 * Os_TE_556564 Os_TE_556523 Chr2 26014928 26014927 - STOWAWAY51_OS 246 0.0047 (14/2993) 0 * Os_TE_556522 Os_TE_556522 Chr2 26014925 26014926 - STOWAWAY51_OS 246 0.0053 (16/2996) 0 * Os_TE_556523 Os_TE_556519 Chr2 26013736 26013737 - RIRE2_LTR 11306 0.0003 (1/2994) 0 * Os_TE_556518 Os_TE_556518 Chr2 26013732 26013731 + RIRE2_LTR 11306 0.0007 (2/2995) 0 * Os_TE_556519 Os_TE_556510 Chr2 26007696 26007695 + ORSgTETNOOT00032 218 0.0004 (1/2854) 0 * * Os_TE_556504 Chr2 26006861 26007207 - NDNA2TNA_OS 346 0.3360 (974/2899) 1 Intact * Os_TE_556500 Chr2 26005841 26006006 - ORSgTEMT01400022 212 0.3388 (1012/2987) 1 Intact * Os_TE_556483 Chr2 26001506 26001507 + MPING 430 0.0026 (7/2705) 0 * Os_TE_556482 Os_TE_556482 Chr2 26001504 26001503 - MPING 430 0.0027 (7/2616) 0 * Os_TE_556483 Os_TE_556472 Chr2 26000436 26000435 + ORSgTEMT01601122 212 0.6479 (1783/2752) 0 * * Os_TE_556442 Chr2 25995100 25995099 + TWIFB1 3737 0.0019 (5/2656) 0 * * Os_TE_556415 Chr2 25990356 25990357 + INDITTO 263 0.0453 (134/2955) 0 * Os_TE_556414 Os_TE_556414 Chr2 25990354 25990353 - INDITTO 263 0.0456 (135/2958) 0 * Os_TE_556415 Os_TE_556399 Chr2 25986010 25986009 + TRUNCATOR 2918 0.0307 (92/2998) 0 * Os_TE_556398 Os_TE_556398 Chr2 25986009 25986010 - TRUNCATOR 2918 0.0277 (83/2997) 0 * Os_TE_556399 Os_TE_556393 Chr2 25982000 25983130 + DS-RICE3N 525 0.0998 (299/2996) 1 Intact * Os_TE_556379 Chr2 25980599 25980598 + STOWAWAY51_OS 246 0.0149 (44/2955) 0 * Os_TE_556378 Os_TE_556378 Chr2 25980593 25980594 - STOWAWAY51_OS 246 0.0169 (50/2963) 0 * Os_TE_556379 Os_TE_556377 Chr2 25980420 25980421 + ORSiTERTOOT00226 792 0.0003 (1/2894) 0 * * Os_TE_556372 Chr2 25977505 25977506 - SC-8_LTR 4951 0.0037 (11/2993) 0 * Os_TE_556371 Os_TE_556371 Chr2 25977501 25977500 + SC-8_LTR 4951 0.0037 (11/2996) 0 * Os_TE_556372 Os_TE_556366 Chr2 25969394 25969395 - MPING 430 0.0101 (30/2967) 0 * Os_TE_556365 Os_TE_556365 Chr2 25969392 25969391 + MPING 430 0.0098 (29/2972) 0 * Os_TE_556366 Os_TE_556361 Chr2 25968997 25969208 - ORSgTEMT01400015 213 0.3294 (977/2966) 1 Intact * Os_TE_556359 Chr2 25967513 25967246 - ORSgTEMT00900005 240 0.3357 (1001/2982) 1 Intact * Os_TE_556352 Chr2 25966825 25966824 - SZ-62LTR 3649 0.7698 (1040/1351) 0 * * Os_TE_556293 Chr2 25937161 25931161 - ORSiTERT00100062 5674 0.1880 (298/1585) 1 Intact Os_TE_556291 Os_TE_556291 Chr2 25931161 25937145 + OSTONOR1_LTR 6440 0.1856 (293/1579) 1 Intact Os_TE_556293 Os_TE_556274 Chr2 25912786 25912787 + ORSgTERT00100204 139 0.0003 (1/2991) 0 * * Os_TE_556271 Chr2 25911776 25911777 - ORSgTETNOOT00754 253 0.0063 (19/2996) 0 * Os_TE_556270 Os_TE_556270 Chr2 25911774 25911773 + ORSgTETNOOT01998 254 0.0063 (19/2994) 0 * Os_TE_556271 Os_TE_556239 Chr2 25901017 25901016 + RETRO1_LTR 8314 0.0003 (1/2958) 0 * * Os_TE_556227 Chr2 25891537 25891538 + ORSiTERTOOT00296 5553 0.0010 (3/2989) 0 * Os_TE_556226 Os_TE_556226 Chr2 25891533 25891532 - SC-3_LTR 5748 0.0010 (3/2989) 0 * Os_TE_556227 Os_TE_556221 Chr2 25887593 25887594 - MuDR3_OS 8604 0.0605 (177/2924) 0 * * Os_TE_556212 Chr2 25884875 25884876 - OSTE24 683 0.0003 (1/2990) 0 * Os_TE_556211 Os_TE_556211 Chr2 25884865 25884864 - OSTE24 683 0.0003 (1/2991) 0 * Os_TE_556212 Os_TE_556209 Chr2 25884237 25884238 - STOWAWAY51_OS 246 0.0003 (1/2959) 0 * * Os_TE_556208 Chr2 25884132 25884133 + ORSgTETNOOT01834 251 0.0007 (2/2972) 0 * * Os_TE_556202 Chr2 25883130 25883366 - ORSgTEMT01600063 239 0.5924 (1407/2375) 1 Intact * Os_TE_556200 Chr2 25881575 25881576 + ORSgTEMT00500201 140 0.4750 (1416/2981) 0 * * Os_TE_556198 Chr2 25880374 25880375 - ORSgTEMT00502171 134 0.0003 (1/2993) 0 * * Os_TE_556197 Chr2 25880244 25880245 + STOWAWAY51_OS 246 0.0007 (2/2984) 0 * * Os_TE_556196 Chr2 25879977 25879834 + ORSgTEMT00500260 149 0.5421 (1615/2979) 1 Intact Os_TE_556193 Os_TE_556193 Chr2 25879829 25879974 - ORSgTEMT00502382 152 0.5344 (1577/2951) 1 Intact Os_TE_556196 Os_TE_556190 Chr2 25878031 25878030 + STOWAWAY51_OS 246 0.0070 (21/2992) 0 * Os_TE_556189 Os_TE_556189 Chr2 25878025 25878026 - STOWAWAY51_OS 246 0.0074 (22/2990) 0 * Os_TE_556190 Os_TE_556181 Chr2 25875996 25875997 + HARB-1_OS 5166 0.0027 (8/2949) 0 * Os_TE_556180 Os_TE_556180 Chr2 25875994 25875993 - HARB-1_OS 5166 0.0027 (8/2946) 0 * Os_TE_556181 Os_TE_556177 Chr2 25874423 25874424 - MPING 430 0.0027 (8/2986) 0 * Os_TE_556176 Os_TE_556176 Chr2 25874421 25874420 + MPING 430 0.0027 (8/2988) 0 * Os_TE_556177 Os_TE_556167 Chr2 25872484 25872712 + ORSgTETNOOT00072 203 0.0994 (297/2988) 1 Intact * Os_TE_556161 Chr2 25866886 25866887 + ORSgTEMT00300154 390 0.0003 (1/2987) 0 * * Os_TE_556140 Chr2 25859354 25859353 + ORSgTEMT01601591 242 0.0010 (3/2997) 0 * Os_TE_556139 Os_TE_556139 Chr2 25859348 25859349 + STOWAWAY51_OS 246 0.0010 (3/2993) 0 * Os_TE_556140 Os_TE_556135 Chr2 25854516 25854515 - STOWAWAY51_OS 246 0.0007 (2/2993) 0 * Os_TE_556134 Os_TE_556134 Chr2 25854510 25854511 + STOWAWAY51_OS 246 0.0007 (2/2998) 0 * Os_TE_556135 Os_TE_556120 Chr2 25853249 25853250 + SPMLIKE 10989 0.0017 (5/2981) 0 * Os_TE_556119 Os_TE_556119 Chr2 25853247 25853246 - ORSgTETN00200001 10994 0.0013 (4/2973) 0 * Os_TE_556120 Os_TE_556092 Chr2 25848181 25848180 + ORSgTERTOOT00009 12852 0.0283 (84/2973) 0 * * Os_TE_556075 Chr2 25839598 25839599 - COPIA2-LTR_OS 6433 0.0003 (1/2983) 0 * Os_TE_556074 Os_TE_556074 Chr2 25839594 25839593 + COPIA2-LTR_OS 6433 0.0003 (1/2982) 0 * Os_TE_556075 Os_TE_556065 Chr2 25834111 25834112 - ORSiTETNOOT00134 607 0.0007 (2/2993) 0 * Os_TE_556064 Os_TE_556064 Chr2 25834104 25834103 + TWIF 586 0.0007 (2/2993) 0 * Os_TE_556065 Os_TE_556063 Chr2 25834074 25834075 - COPIA2-LTR_OS 6433 0.0013 (4/2995) 0 * Os_TE_556062 Os_TE_556062 Chr2 25834070 25834069 + COPIA2-LTR_OS 6433 0.0017 (5/2993) 0 * Os_TE_556063 Os_TE_556037 Chr2 25820744 25820743 - ORSgTERT00201385 8846 0.0013 (4/2988) 0 * * Os_TE_556028 Chr2 25817005 25817004 + SZ-56_LTR 5650 0.6058 (1810/2988) 0 * * Os_TE_556025 Chr2 25814831 25814830 + TRUNCATOR 2918 0.0854 (255/2986) 0 * Os_TE_556024 Os_TE_556024 Chr2 25814830 25814831 - TRUNCATOR 2918 0.0770 (229/2975) 0 * Os_TE_556025 Os_TE_556023 Chr2 25814642 25814643 + ORSgTETNOOT01219 231 0.5968 (1773/2971) 0 * Os_TE_556022 Os_TE_556022 Chr2 25814639 25814638 + ORSgTETNOOT00908 242 0.5996 (1791/2987) 0 * Os_TE_556023 Os_TE_555979 Chr2 25795659 25795658 - ORSgTEMT01400014 209 0.0068 (20/2952) 0 * Os_TE_555978 Os_TE_555978 Chr2 25795655 25795656 - ORSgTEMT01400038 210 0.0064 (19/2952) 0 * Os_TE_555979 Os_TE_555957 Chr2 25789194 25789195 - INDITTO 263 0.0127 (37/2920) 0 * Os_TE_555956 Os_TE_555956 Chr2 25789192 25789191 + INDITTO 263 0.0337 (100/2971) 0 * Os_TE_555957 Os_TE_555922 Chr2 25782456 25782457 - OSLINE1-2 7128 0.0024 (7/2949) 0 * * Os_TE_555909 Chr2 25777602 25777603 + TELIA 141 0.0422 (126/2988) 0 * Os_TE_555908 Os_TE_555908 Chr2 25777594 25777593 - TELIA 141 0.0428 (128/2990) 0 * Os_TE_555909 Os_TE_555907 Chr2 25777482 25777481 - STOWAWAY51_OS 246 0.0003 (1/2995) 0 * Os_TE_555906 Os_TE_555906 Chr2 25777476 25777477 + STOWAWAY51_OS 246 0.0003 (1/2996) 0 * Os_TE_555907 Os_TE_555905 Chr2 25776810 25776809 - STOWAWAY51_OS 246 0.0003 (1/2961) 0 * * Os_TE_555903 Chr2 25776191 25776192 - ORSgTETNOOT02417 265 0.0731 (192/2627) 0 * Os_TE_555902 Os_TE_555902 Chr2 25776189 25776188 - INDITTO 263 0.0750 (194/2585) 0 * Os_TE_555903 Os_TE_555893 Chr2 25766790 25767024 + ORSgTETNOOT00908 242 0.2914 (872/2992) 1 Intact * Os_TE_555887 Chr2 25765388 25765387 - ORSiTETNOOT00107 906 0.4812 (1430/2972) 0 * Os_TE_555886 Os_TE_555886 Chr2 25765384 25765385 + ORSiTETNOOT00107 906 0.4864 (1453/2987) 0 * Os_TE_555887 Os_TE_555873 Chr2 25760892 25760893 - F770 284 0.0003 (1/2986) 0 * Os_TE_555872 Os_TE_555872 Chr2 25760890 25760889 + F770 284 0.0003 (1/2988) 0 * Os_TE_555873 Os_TE_555867 Chr2 25755512 25755513 - MPING 430 0.0549 (164/2988) 0 * * Os_TE_555852 Chr2 25751040 25751039 + SINE1OS 127 0.0480 (138/2873) 0 * * Os_TE_555850 Chr2 25749997 25749996 + ORSiTETN00100011 676 0.0047 (14/2993) 0 * * Os_TE_555848 Chr2 25749496 25749497 + RETROSAT4_LTR 13504 0.0161 (48/2988) 0 * * Os_TE_555827 Chr2 25736065 25736066 + OSTONOR1_LTR 6440 0.0044 (13/2988) 0 * * Os_TE_555818 Chr2 25731575 25731576 + COPI2_LTR 4733 0.0107 (32/2999) 0 * Os_TE_555817 Os_TE_555817 Chr2 25731571 25731570 - COPI2_LTR 4733 0.0107 (32/2998) 0 * Os_TE_555818 Os_TE_555816 Chr2 25731024 25731025 + SZ-55_LTR 10318 0.0003 (1/2994) 0 * Os_TE_555815 Os_TE_555815 Chr2 25731020 25731019 - SZ-55_LTR 10318 0.0003 (1/2992) 0 * Os_TE_555816 Os_TE_555811 Chr2 25726113 25726114 - ORSgTEMT01602430 234 0.3749 (1122/2993) 0 * * Os_TE_555805 Chr2 25722640 25702504 + RIREX_LTR 8828 0.3209 (962/2998) 1 Intact Os_TE_555799 Os_TE_555799 Chr2 25702504 25722640 - RIREX_LTR 8828 0.3182 (952/2992) 1 Intact Os_TE_555805 Os_TE_555779 Chr2 25699281 25699282 - MuDR2_OS 6770 0.0007 (2/2991) 0 * Os_TE_555778 Os_TE_555778 Chr2 25699272 25699271 + MuDR2_OS 6770 0.0007 (2/2993) 0 * Os_TE_555779 Os_TE_555777 Chr2 25699006 25699007 + OLO24 345 0.0057 (17/2997) 0 * * Os_TE_555776 Chr2 25697085 25697086 + ORSgTETNOOT01998 254 0.3589 (1075/2995) 0 * Os_TE_555775 Os_TE_555775 Chr2 25697083 25697082 - ORSgTETNOOT00754 253 0.3581 (1073/2996) 0 * Os_TE_555776 Os_TE_555754 Chr2 25689377 25689378 - COPIA2-LTR_OS 6433 0.0003 (1/2969) 0 * * Os_TE_555752 Chr2 25689361 25689360 + SINE1OS 127 0.3809 (1137/2985) 0 * * Os_TE_555743 Chr2 25687369 25687370 - SC-3_LTR 5748 0.0003 (1/2976) 0 * Os_TE_555742 Os_TE_555742 Chr2 25687365 25687364 + ORSiTERTOOT00296 5553 0.0004 (1/2795) 0 * Os_TE_555743 Os_TE_555730 Chr2 25678472 25678473 + OSTE33 1012 0.1842 (552/2997) 0 * Os_TE_555729 Os_TE_555729 Chr2 25678463 25678462 + OSTE33 1012 0.1814 (543/2993) 0 * Os_TE_555730 Os_TE_555717 Chr2 25664855 25664856 + TWIF 586 0.0003 (1/2954) 0 * Os_TE_555716 Os_TE_555716 Chr2 25664848 25664847 - ORSiTETNOOT00134 607 0.0003 (1/2954) 0 * Os_TE_555717 Os_TE_555711 Chr2 25659929 25659930 + RIREX_LTR 8828 0.0054 (16/2976) 0 * Os_TE_555710 Os_TE_555710 Chr2 25659925 25659924 - RIREX_LTR 8828 0.0054 (16/2960) 0 * Os_TE_555711 Os_TE_555692 Chr2 25653859 25653858 - ORSiTERTOOT00200 3901 0.0007 (2/2957) 0 * * Os_TE_555683 Chr2 25645801 25645800 + RMU2A1C 1169 0.3748 (1124/2999) 0 * * Os_TE_555679 Chr2 25644696 25644695 - COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * * Os_TE_555675 Chr2 25643638 25643639 + DS-RICE4N 715 0.0054 (16/2984) 0 * * Os_TE_555673 Chr2 25643563 25643564 + RETROSAT4_LTR 13504 0.0003 (1/2993) 0 * Os_TE_555672 Os_TE_555672 Chr2 25643559 25643558 - SZ-35LTR 3853 0.0003 (1/2989) 0 * Os_TE_555673 Os_TE_555667 Chr2 25641556 25641821 - F524 291 0.3654 (1076/2945) 1 Intact * Os_TE_555665 Chr2 25639525 25639526 - COPIA2-LTR_OS 6433 0.0007 (2/2998) 0 * * Os_TE_555663 Chr2 25639082 25638828 + ORSgTETNOOT01998 254 0.3604 (1078/2991) 1 Intact * Os_TE_555659 Chr2 25637860 25637861 - COPIA2-LTR_OS 6433 0.0004 (1/2270) 0 * Os_TE_555658 Os_TE_555658 Chr2 25637856 25637855 + COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_555659 Os_TE_555639 Chr2 25617928 25617929 + RETRO2A_LTR 12895 0.0004 (1/2819) 0 * Os_TE_555638 Os_TE_555638 Chr2 25617924 25617923 - RETRO1_LTR 8314 0.0003 (1/2999) 0 * Os_TE_555639 Os_TE_555606 Chr2 25610362 25610363 + RIRE2_LTR 11306 0.0659 (197/2990) 0 * Os_TE_555605 Os_TE_555605 Chr2 25610358 25610357 - RIRE2_LTR 11306 0.0669 (200/2990) 0 * Os_TE_555606 Os_TE_555599 Chr2 25609349 25609350 + AMYLTP 383 0.0017 (5/2996) 0 * Os_TE_555598 Os_TE_555598 Chr2 25609341 25609340 - AMYLTP 383 0.0017 (5/2995) 0 * Os_TE_555599 Os_TE_555584 Chr2 25607588 25607589 + CACTA-M 1129 0.0058 (9/1539) -1 * * Os_TE_555577 Chr2 25603121 25603122 + MPING 430 0.0003 (1/2997) 0 * Os_TE_555576 Os_TE_555576 Chr2 25603119 25603118 - MPING 430 0.0003 (1/2997) 0 * Os_TE_555577 Os_TE_555574 Chr2 25602601 25602602 + SC-1_LTR 6888 0.0100 (30/2990) 0 * * Os_TE_555570 Chr2 25601636 25601635 + ORSgTETNOOT00032 218 0.0038 (11/2920) 0 * * Os_TE_555543 Chr2 25586839 25586840 - ORSgTEMT00100582 334 0.1804 (529/2933) 0 * Os_TE_555542 Os_TE_555542 Chr2 25586838 25586837 + NDNA1TNA_OS 334 0.1814 (534/2944) 0 * Os_TE_555543 Os_TE_555536 Chr2 25586149 25586148 + ORSgTEMT01601591 242 0.0003 (1/2995) 0 * Os_TE_555535 Os_TE_555535 Chr2 25586143 25586144 + STOWAWAY51_OS 246 0.0003 (1/2994) 0 * Os_TE_555536 Os_TE_555516 Chr2 25577140 25577139 - ORSiTEMT01000008 242 0.0676 (202/2990) 0 * * Os_TE_555502 Chr2 25568930 25568931 + OSTE33 1012 0.0007 (2/2996) 0 * Os_TE_555501 Os_TE_555501 Chr2 25568921 25568920 + OSTE33 1012 0.0007 (2/2997) 0 * Os_TE_555502 Os_TE_555492 Chr2 25554334 25554335 + RETRO1_LTR 8314 0.0015 (4/2753) -1 * * Os_TE_555491 Chr2 25553668 25553669 - MPING 430 0.0047 (14/2994) 0 * Os_TE_555490 Os_TE_555490 Chr2 25553666 25553665 + MPING 430 0.0043 (13/2996) 0 * Os_TE_555491 Os_TE_555485 Chr2 25552924 25552923 - STOWAWAY44_OS 240 0.0003 (1/2969) 0 * Os_TE_555484 Os_TE_555484 Chr2 25552921 25552922 - STOWAWAY51_OS 246 0.0003 (1/2956) 0 * Os_TE_555485 Os_TE_555443 Chr2 25540137 25540138 - MIDWAY 985 0.0013 (4/2999) 0 * * Os_TE_555440 Chr2 25538379 25538380 + ORSgTETNOOT01668 244 0.0007 (2/2995) 0 * * Os_TE_555431 Chr2 25534558 25534557 - STOWAWAY51_OS 246 0.0003 (1/2997) 0 * Os_TE_555430 Os_TE_555430 Chr2 25534552 25534553 + STOWAWAY51_OS 246 0.0003 (1/2995) 0 * Os_TE_555431 Os_TE_555393 Chr2 25521672 25521673 - RETROSAT3_LTR 11537 0.0147 (44/2993) 0 * Os_TE_555392 Os_TE_555392 Chr2 25521668 25521667 + RETROSAT2LTR 12796 0.0150 (45/2992) 0 * Os_TE_555393 Os_TE_555386 Chr2 25514661 25514660 + ORSgTEMT01601122 212 0.2401 (719/2994) 0 * * Os_TE_555383 Chr2 25514056 25514055 + STOWAWAY51_OS 246 0.0007 (2/2986) 0 * Os_TE_555382 Os_TE_555382 Chr2 25514050 25514051 - STOWAWAY51_OS 246 0.0007 (2/2993) 0 * Os_TE_555383 Os_TE_555381 Chr2 25513717 25513718 - MuDR3_OS 8604 0.0010 (3/2980) 0 * Os_TE_555380 Os_TE_555380 Chr2 25513708 25513707 - MuDR3_OS 8604 0.0010 (3/2984) 0 * Os_TE_555381 Os_TE_555354 Chr2 25505502 25505503 + COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * * Os_TE_555336 Chr2 25501994 25501995 + ORSiTETN00100011 676 0.1156 (345/2985) 0 * * Os_TE_555330 Chr2 25497266 25496946 + ORSgTEMT00100531 325 0.2985 (833/2791) 1 Intact Os_TE_555329 Os_TE_555329 Chr2 25496930 25497264 + NDNA1TNA_OS 334 0.3297 (906/2748) 1 Intact Os_TE_555330 Os_TE_555327 Chr2 25496273 25496274 - MPING 430 0.0007 (2/2998) 0 * Os_TE_555326 Os_TE_555326 Chr2 25496271 25496270 + MPING 430 0.0007 (2/2997) 0 * Os_TE_555327 Os_TE_555321 Chr2 25491802 25491803 - MPING 430 0.0007 (2/2971) 0 * Os_TE_555320 Os_TE_555320 Chr2 25491800 25491799 + MPING 430 0.0007 (2/2979) 0 * Os_TE_555321 Os_TE_555319 Chr2 25489786 25489787 + COPI2_LTR 4733 0.0003 (1/2972) 0 * * Os_TE_555301 Chr2 25481327 25481328 - MuDR4_OS 7610 0.0007 (2/2956) 0 * * Os_TE_555299 Chr2 25480906 25480907 - TRUNCATOR2_LTR 2904 0.0014 (4/2873) 0 * Os_TE_555298 Os_TE_555298 Chr2 25480902 25480901 + ORSiCMCM00100019 2717 0.0014 (4/2928) 0 * Os_TE_555299 Os_TE_555249 Chr2 25469862 25469863 - INDITTO 263 0.0044 (13/2983) 0 * * Os_TE_555232 Chr2 25458680 25458681 + ORSgTEMT01700429 128 0.0030 (9/2981) 0 * * Os_TE_555223 Chr2 25447648 25447649 - MPING 430 0.0003 (1/2995) 0 * * Os_TE_555219 Chr2 25446106 25446107 + AMYLTP 383 0.0652 (194/2974) 0 * Os_TE_555218 Os_TE_555218 Chr2 25446098 25446097 - AMYLTP 383 0.0605 (179/2958) 0 * Os_TE_555219 Os_TE_555205 Chr2 25441475 25441476 + OSTE20 496 0.1954 (581/2973) 0 * Os_TE_555204 Os_TE_555204 Chr2 25441471 25441470 + OSTE20 496 0.1891 (559/2956) 0 * Os_TE_555205 Os_TE_555198 Chr2 25438536 25438535 + ORSgTEMT01702017 149 0.0010 (3/2885) 0 * * Os_TE_555183 Chr2 25425729 25425730 + TELIA 141 0.0007 (2/2990) 0 * Os_TE_555182 Os_TE_555182 Chr2 25425721 25425720 - TELIA 141 0.0007 (2/2992) 0 * Os_TE_555183 Os_TE_555178 Chr2 25424788 25424789 + COPI2_LTR 4733 0.0007 (2/2980) 0 * Os_TE_555177 Os_TE_555177 Chr2 25424784 25424783 - COPI2_LTR 4733 0.0007 (2/2979) 0 * Os_TE_555178 Os_TE_555164 Chr2 25413836 25413837 + OSTONOR1_LTR 6440 0.0157 (47/2998) 0 * Os_TE_555163 Os_TE_555163 Chr2 25413832 25413831 - OSTONOR1_LTR 6440 0.0157 (47/2997) 0 * Os_TE_555164 Os_TE_555158 Chr2 25412533 25412532 - STOWAWAY44_OS 240 0.0541 (162/2993) 0 * Os_TE_555157 Os_TE_555157 Chr2 25412530 25412531 + STOWAWAY44_OS 240 0.0552 (165/2988) 0 * Os_TE_555158 Os_TE_555156 Chr2 25411870 25411871 + RIRE2_LTR 11306 0.2035 (609/2992) 0 * Os_TE_555155 Os_TE_555155 Chr2 25411866 25411865 - RIRE2_LTR 11306 0.1896 (564/2975) 0 * Os_TE_555156 Os_TE_555154 Chr2 25411818 25411819 + COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_555153 Os_TE_555153 Chr2 25411814 25411813 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_555154 Os_TE_555152 Chr2 25411291 25411290 + ORSgTETNOOT00908 242 0.0037 (11/2997) 0 * * Os_TE_555150 Chr2 25410201 25410202 + MDR2 6967 0.0163 (48/2938) 0 * Os_TE_555149 Os_TE_555149 Chr2 25410193 25410192 - MDR2 6967 0.0157 (46/2936) 0 * Os_TE_555150 Os_TE_555134 Chr2 25402438 25402439 - STOWAWAY1_OS 149 0.6696 (2000/2987) 0 * Os_TE_555133 Os_TE_555133 Chr2 25402437 25402436 - STOWAWAY1_OS 149 0.6674 (1993/2986) 0 * Os_TE_555134 Os_TE_555131 Chr2 25402119 25402120 + DS-RICE2N 613 0.0680 (200/2941) 0 * Os_TE_555130 Os_TE_555130 Chr2 25402112 25402111 - DS-RICE2N 613 0.0711 (213/2996) 0 * Os_TE_555131 Os_TE_555121 Chr2 25398711 25398712 + TESS 244 0.0623 (174/2791) 0 * Os_TE_555120 Os_TE_555120 Chr2 25398704 25398703 - TESS 244 0.0672 (193/2873) 0 * Os_TE_555121 Os_TE_555118 Chr2 25398691 25398690 - F569 228 0.0011 (3/2773) 0 * * Os_TE_555112 Chr2 25397428 25397429 - ORSgTEMT00500026 147 0.0200 (60/2994) 0 * * Os_TE_555106 Chr2 25395624 25395625 - NDNA1TNA_OS 334 0.0010 (3/2996) 0 * Os_TE_555105 Os_TE_555105 Chr2 25395622 25395621 + NDNA1TNA_OS 334 0.0010 (3/2998) 0 * Os_TE_555106 Os_TE_555100 Chr2 25395011 25395010 + ORSgTEMT01702111 154 0.0200 (60/2997) 0 * Os_TE_555099 Os_TE_555099 Chr2 25395008 25395009 + ORSgTEMT01701591 154 0.0200 (60/2997) 0 * Os_TE_555100 Os_TE_555088 Chr2 25380588 25380587 - COPIA2-LTR_OS 6433 0.0003 (1/2982) 0 * * Os_TE_555077 Chr2 25379896 25379895 + ORSgTEMT02400034 225 0.1128 (336/2980) 0 * Os_TE_555076 Os_TE_555076 Chr2 25379893 25379894 - ORSgTEMT02400179 221 0.1120 (334/2982) 0 * Os_TE_555077 Os_TE_555069 Chr2 25379351 25379350 - ORSgTETNOOT01930 140 0.0010 (3/2982) 0 * Os_TE_555068 Os_TE_555068 Chr2 25379350 25379351 + ORSgTEMT00500852 140 0.0010 (3/2974) 0 * Os_TE_555069 Os_TE_555067 Chr2 25379333 25379334 - SZ-22_LTR 4403 0.0003 (1/2977) 0 * Os_TE_555066 Os_TE_555066 Chr2 25379329 25379328 + ORSiTERTOOT00226 792 0.0003 (1/2982) 0 * Os_TE_555067 Os_TE_555065 Chr2 25379282 25379281 + ORSgTEMT00500498 155 0.0010 (3/2981) 0 * * Os_TE_555009 Chr2 25359061 25359060 - RPO_OS 1983 0.0018 (3/1634) 0 * * Os_TE_554996 Chr2 25353924 25353925 - MuDR2_OS 6770 0.2696 (189/701) 0 * * Os_TE_554987 Chr2 25352414 25352553 + ORSgTEMT00500201 140 0.3367 (266/790) 1 Intact * Os_TE_554983 Chr2 25351853 25351854 - COPI2_LTR 4733 0.0145 (31/2138) 0 * * Os_TE_554967 Chr2 25346660 25346659 + MERMITEA 1710 0.0118 (20/1689) 0 * * Os_TE_554964 Chr2 25344725 25348201 + STOWAWAY50_OS 174 0.4088 (1168/2857) 1 Intact * Os_TE_554963 Chr2 25344331 25344332 - TYPEU 362 0.2892 (613/2120) 0 * * Os_TE_554961 Chr2 25344262 25344014 + ORSgTEMT00900973 235 0.6880 (1345/1955) 1 Intact Os_TE_554957 Os_TE_554957 Chr2 25344014 25344260 - ORSgTEMT00901138 254 0.7266 (1361/1873) 1 Intact Os_TE_554961 Os_TE_554952 Chr2 25342040 25343434 + OSTE33 1012 0.6572 (1319/2007) 1 Intact * Os_TE_554951 Chr2 25341984 25341985 - INDITTO 263 0.3241 (951/2934) 0 * * Os_TE_554947 Chr2 25333770 25333771 + SC-8_LTR 4951 0.0003 (1/2995) 0 * Os_TE_554946 Os_TE_554946 Chr2 25333766 25333765 - SC-8_LTR 4951 0.0003 (1/2995) 0 * Os_TE_554947 Os_TE_554940 Chr2 25330333 25330036 - ORSgTEMT01900023 299 0.4375 (1302/2976) 1 Intact Os_TE_554938 Os_TE_554938 Chr2 25330031 25330330 + TYPEH 309 0.4380 (1299/2966) 1 Intact Os_TE_554940 Os_TE_554931 Chr2 25327633 25327632 - Cassandra_OS-LTR 764 0.4356 (1072/2461) 0 * * Os_TE_554926 Chr2 25326464 25326465 + CACTA-K 1131 0.4383 (1267/2891) 0 * Os_TE_554925 Os_TE_554925 Chr2 25326462 25326461 - CACTA-L 1162 0.2942 (690/2345) 0 * Os_TE_554926 Os_TE_554918 Chr2 25324038 25324039 + CACTA-H 1152 0.0050 (15/2978) 0 * Os_TE_554917 Os_TE_554917 Chr2 25324036 25324035 - CACTA-H 1152 0.0047 (14/2989) 0 * Os_TE_554918 Os_TE_554914 Chr2 25323892 25323891 - RIRE5-LTR_OS 6427 0.0037 (11/2984) 0 * * Os_TE_554907 Chr2 25322671 25323668 + MDM2 312 0.8921 (2589/2902) 1 Intact * Os_TE_554904 Chr2 25321942 25321579 - ORSgTEMT00600524 364 0.0674 (202/2995) 1 Intact Os_TE_554903 Os_TE_554903 Chr2 25321579 25321939 + ORSgTEMT00600272 361 0.0741 (206/2781) 1 Intact Os_TE_554904 Os_TE_554901 Chr2 25319856 25319855 + TRUNCATOR 2918 0.0057 (17/2994) 0 * * Os_TE_554900 Chr2 25319101 25319100 + AMYLTP 383 0.0766 (168/2194) 0 * * Os_TE_554893 Chr2 25318193 25318194 + RIRE3A_LTR 10580 0.0107 (31/2896) 0 * * Os_TE_554889 Chr2 25317615 25317616 - RIREX_LTR 8828 0.0545 (163/2991) 0 * Os_TE_554888 Os_TE_554888 Chr2 25317611 25317610 + RIREX_LTR 8828 0.0548 (164/2994) 0 * Os_TE_554889 Os_TE_554874 Chr2 25313278 25313279 - RIRE2_LTR 11306 0.2130 (409/1920) 0 * Os_TE_554873 Os_TE_554873 Chr2 25313274 25313273 + RIRE2_LTR 11306 0.2177 (416/1911) 0 * Os_TE_554874 Os_TE_554871 Chr2 25312690 25312691 + STOWAWAY15-2_OS 145 0.3298 (909/2756) 0 * * Os_TE_554861 Chr2 25310051 25310050 - SZ-48LTR 3632 0.1997 (480/2404) 0 * * Os_TE_554859 Chr2 25309178 25309179 - SZ-20LTR 1395 0.4285 (1135/2649) 0 * * Os_TE_554841 Chr2 25305201 25305202 + OSTE33 1012 0.1278 (382/2989) 0 * Os_TE_554840 Os_TE_554840 Chr2 25305192 25305191 + OSTE33 1012 0.1244 (372/2990) 0 * Os_TE_554841 Os_TE_554839 Chr2 25305088 25305089 + RIRE2_LTR 11306 0.0545 (162/2972) 0 * Os_TE_554838 Os_TE_554838 Chr2 25305084 25305083 - RIRE2_LTR 11306 0.0552 (164/2970) 0 * Os_TE_554839 Os_TE_554810 Chr2 25279931 25279932 - SC-8_LTR 4951 0.0003 (1/2990) 0 * Os_TE_554809 Os_TE_554809 Chr2 25279927 25279926 + SC-8_LTR 4951 0.0003 (1/2988) 0 * Os_TE_554810 Os_TE_554805 Chr2 25276607 25276608 + SC-3_LTR 5748 0.0010 (3/2981) 0 * Os_TE_554804 Os_TE_554804 Chr2 25276603 25276602 - SC-3_LTR 5748 0.0013 (4/2981) 0 * Os_TE_554805 Os_TE_554790 Chr2 25267710 25267711 - RIREX_LTR 8828 0.0114 (34/2991) 0 * Os_TE_554789 Os_TE_554789 Chr2 25267706 25267705 + RIREX_LTR 8828 0.0113 (34/2999) 0 * Os_TE_554790 Os_TE_554787 Chr2 25267519 25267520 - HEARTBLEEDING 326 0.1464 (436/2978) 0 * * Os_TE_554786 Chr2 25267483 25267484 - ORSgTEMT00901138 254 0.0525 (157/2990) 0 * * Os_TE_554746 Chr2 25250025 25243584 - OSTONOR1_LTR 6440 0.0550 (164/2981) 1 Intact Os_TE_554744 Os_TE_554744 Chr2 25243584 25250025 + OSTONOR1_LTR 6440 0.0550 (164/2982) 1 Intact Os_TE_554746 Os_TE_554743 Chr2 25242142 25242143 + TELIA 141 0.0007 (2/2969) 0 * Os_TE_554742 Os_TE_554742 Chr2 25242134 25242133 - TELIA 141 0.0007 (2/2973) 0 * Os_TE_554743 Os_TE_554725 Chr2 25229236 25229237 + ORSgTERT00201382 11280 0.0003 (1/2985) 0 * * Os_TE_554722 Chr2 25229113 25229114 + ORSiTERTOOT00441 4741 0.2740 (821/2996) 0 * * Os_TE_554716 Chr2 25227784 25227785 - RIRE3A_LTR 10580 0.0050 (15/2997) 0 * Os_TE_554715 Os_TE_554715 Chr2 25227780 25227779 + ORSiTERTOOT00027 10853 0.0040 (12/2988) 0 * Os_TE_554716 Os_TE_554714 Chr2 25227335 25227336 - RETRO2_LTR 12874 0.3765 (1126/2991) 0 * Os_TE_554713 Os_TE_554713 Chr2 25227331 25227330 + RETRO2_LTR 12874 0.3771 (1129/2994) 0 * Os_TE_554714 Os_TE_554709 Chr2 25226154 25226153 + STOWAWAY51_OS 246 0.0483 (136/2814) 0 * Os_TE_554708 Os_TE_554708 Chr2 25226148 25226149 - STOWAWAY51_OS 246 0.0495 (142/2870) 0 * Os_TE_554709 Os_TE_554707 Chr2 25226004 25226005 + OLO24 345 0.0003 (1/2916) 0 * Os_TE_554706 Os_TE_554706 Chr2 25226001 25226000 - OLO24 345 0.0007 (1/1421) 0 * Os_TE_554707 Os_TE_554643 Chr2 25216020 25216021 + CACTA-M 1129 0.1131 (338/2988) 0 * Os_TE_554642 Os_TE_554642 Chr2 25216018 25216017 - CACTA-M 1129 0.1113 (332/2982) 0 * Os_TE_554643 Os_TE_554622 Chr2 25212958 25212959 + MuDR4_OS 7610 0.0003 (1/2942) 0 * * Os_TE_554618 Chr2 25212535 25212536 + CASTAWAY 364 0.1502 (448/2983) 0 * * Os_TE_554590 Chr2 25206022 25206023 - COPI2_LTR 4733 0.0003 (1/2928) 0 * Os_TE_554589 Os_TE_554589 Chr2 25206018 25206017 + COPI2_LTR 4733 0.0003 (1/2911) 0 * Os_TE_554590 Os_TE_554570 Chr2 25202134 25202133 - ORSgTEMT01601432 239 0.0241 (72/2982) 0 * Os_TE_554569 Os_TE_554569 Chr2 25202131 25202132 + ORSgTEMT01602181 239 0.0244 (73/2986) 0 * Os_TE_554570 Os_TE_554567 Chr2 25201101 25201100 + ORSgTEMT01601122 212 0.0013 (4/2989) 0 * Os_TE_554566 Os_TE_554566 Chr2 25201100 25201101 - STOWAWAY21_OS 243 0.0013 (4/2997) 0 * Os_TE_554567 Os_TE_554565 Chr2 25199596 25199597 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_554564 Os_TE_554564 Chr2 25199592 25199591 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_554565 Os_TE_554556 Chr2 25194060 25194061 - OSTE33 1012 0.3542 (1057/2984) 0 * Os_TE_554555 Os_TE_554555 Chr2 25194051 25194050 - OSTE33 1012 0.3519 (1047/2975) 0 * Os_TE_554556 Os_TE_554548 Chr2 25185637 25185636 + COPI2_LTR 4733 0.0004 (1/2336) 0 * * Os_TE_554530 Chr2 25175967 25175968 + RETROSAT4_LTR 13504 0.1972 (588/2982) 0 * Os_TE_554529 Os_TE_554529 Chr2 25175963 25175962 - Cassandra_OS-LTR 764 0.2025 (606/2993) 0 * Os_TE_554530 Os_TE_554525 Chr2 25166716 25166717 + STOWAWAY21_OS 243 0.0010 (3/2991) 0 * * Os_TE_554510 Chr2 25161097 25161098 + ORSgTETNOOT00908 242 0.0522 (156/2988) 0 * * Os_TE_554505 Chr2 25160266 25160267 - RETRO2A_LTR 12895 0.0263 (78/2961) 0 * * Os_TE_554496 Chr2 25159397 25158293 - RETRO2_LTR 12874 0.3944 (1180/2992) 1 Solo_LTR Os_TE_554494 Os_TE_554494 Chr2 25158294 25159397 + ORSgTERTOOT00009 12852 0.3945 (1180/2991) 1 Intact Os_TE_554496 Os_TE_554492 Chr2 25158103 25158104 - ORSgTETN00200001 10994 0.0007 (2/2998) 0 * Os_TE_554491 Os_TE_554491 Chr2 25158101 25158100 + SPMLIKE 10989 0.0003 (1/2997) 0 * Os_TE_554492 Os_TE_554486 Chr2 25155080 25155081 - MPING 430 0.0003 (1/2997) 0 * Os_TE_554485 Os_TE_554485 Chr2 25155078 25155077 + MPING 430 0.0003 (1/2997) 0 * Os_TE_554486 Os_TE_554482 Chr2 25153540 25153541 - ORSgTEMT02400179 221 0.0163 (48/2951) 0 * * Os_TE_554477 Chr2 25148337 25148338 + TRUNCATOR 2918 0.0107 (32/2999) 0 * * Os_TE_554475 Chr2 25147508 25147509 - OSTE33 1012 0.0003 (1/2997) 0 * * Os_TE_554470 Chr2 25144702 25144703 + MPING 430 0.0003 (1/2992) 0 * Os_TE_554469 Os_TE_554469 Chr2 25144700 25144699 - MPING 430 0.0003 (1/2988) 0 * Os_TE_554470 Os_TE_554465 Chr2 25141723 25141724 + ORSgTEMT00600272 361 0.0003 (1/2983) 0 * Os_TE_554464 Os_TE_554464 Chr2 25141718 25141717 + ORSgTEMT00600376 329 0.0003 (1/2985) 0 * Os_TE_554465 Os_TE_554463 Chr2 25141593 25141592 - COPIA2-LTR_OS 6433 0.0003 (1/2983) 0 * * Os_TE_554444 Chr2 25135860 25135859 + ORSgTETNOOT00908 242 0.0003 (1/2997) 0 * * Os_TE_554442 Chr2 25133413 25133414 + MPING 430 0.0003 (1/2945) 0 * Os_TE_554441 Os_TE_554441 Chr2 25133411 25133410 + INDITTO 263 0.0003 (1/2953) 0 * Os_TE_554442 Os_TE_554437 Chr2 25131263 25131264 - MPING 430 0.0003 (1/2989) 0 * Os_TE_554436 Os_TE_554436 Chr2 25131261 25131260 + MPING 430 0.0003 (1/2977) 0 * Os_TE_554437 Os_TE_554428 Chr2 25128061 25128060 - STOWAWAY10_OS 259 0.0017 (5/2997) 0 * Os_TE_554427 Os_TE_554427 Chr2 25128051 25128052 - ORSgTEMT00101174 225 0.0013 (4/2997) 0 * Os_TE_554428 Os_TE_554421 Chr2 25123918 25123919 + RETRO2_LTR 12874 0.0288 (86/2988) 0 * Os_TE_554420 Os_TE_554420 Chr2 25123914 25123913 - RETRO2_LTR 12874 0.0290 (87/2995) 0 * Os_TE_554421 Os_TE_554414 Chr2 25122739 25122740 + MuDR2_OS 6770 0.0003 (1/2969) 0 * Os_TE_554413 Os_TE_554413 Chr2 25122730 25122729 - MuDR2_OS 6770 0.0003 (1/2968) 0 * Os_TE_554414 Os_TE_554406 Chr2 25119688 25119689 - TELIA 141 0.0030 (9/2989) 0 * * Os_TE_554334 Chr2 25062023 25062024 + TRUNCATOR2_LTR 2904 0.0008 (2/2405) 0 * * Os_TE_554299 Chr2 25042949 25042948 + ORSgTETNOOT02577 232 0.0292 (87/2984) 0 * * Os_TE_554298 Chr2 25042772 25042880 + SINE1OS 127 0.3439 (1023/2975) 1 Intact * Os_TE_554296 Chr2 25041613 25041614 + RIREX_LTR 8828 0.0003 (1/2992) 0 * Os_TE_554295 Os_TE_554295 Chr2 25041609 25041608 - RIREX_LTR 8828 0.0007 (2/2989) 0 * Os_TE_554296 Os_TE_554280 Chr2 25036113 25036112 - SZ-67LTR 1540 0.0003 (1/2921) 0 * * Os_TE_554258 Chr2 25028831 25028832 - HARB-1_OS 5166 0.0003 (1/2985) 0 * Os_TE_554257 Os_TE_554257 Chr2 25028829 25028828 + MPING 430 0.0013 (4/2983) 0 * Os_TE_554258 Os_TE_554191 Chr2 25006534 25006533 + STOWAWAY21_OS 243 0.0269 (80/2975) 0 * Os_TE_554190 Os_TE_554190 Chr2 25006533 25006534 + ORSgTEMT01601122 212 0.0255 (76/2975) 0 * Os_TE_554191 Os_TE_554162 Chr2 24990720 24990721 + COPIA2-LTR_OS 6433 0.0064 (19/2979) 0 * Os_TE_554161 Os_TE_554161 Chr2 24990716 24990715 - COPIA2-LTR_OS 6433 0.0067 (20/2983) 0 * Os_TE_554162 Os_TE_554153 Chr2 24985439 24985438 + ORSgTEMT01601591 242 0.0003 (1/2990) 0 * Os_TE_554152 Os_TE_554152 Chr2 24985433 24985434 + STOWAWAY51_OS 246 0.0003 (1/2989) 0 * Os_TE_554153 Os_TE_554151 Chr2 24985308 24985307 + STOWAWAY51_OS 246 0.0020 (6/2982) 0 * Os_TE_554150 Os_TE_554150 Chr2 24985302 24985303 - STOWAWAY51_OS 246 0.0020 (6/2992) 0 * Os_TE_554151 Os_TE_554137 Chr2 24982910 24982909 + STOWAWAY51_OS 246 0.0003 (1/2997) 0 * Os_TE_554136 Os_TE_554136 Chr2 24982904 24982905 - STOWAWAY51_OS 246 0.0003 (1/2996) 0 * Os_TE_554137 Os_TE_554119 Chr2 24978168 24978169 + RIREX_LTR 8828 0.0003 (1/2984) 0 * * Os_TE_554116 Chr2 24977454 24977453 - STOWAWAY51_OS 246 0.0044 (13/2937) 0 * * Os_TE_554104 Chr2 24967140 24967141 + AMYLTP 383 0.2471 (737/2983) 0 * Os_TE_554103 Os_TE_554103 Chr2 24967132 24967131 - AMYLTP 383 0.2472 (736/2977) 0 * Os_TE_554104 Os_TE_554102 Chr2 24967126 24967125 + ORSgTEMT00800058 376 0.0004 (1/2561) 0 * * Os_TE_554084 Chr2 24961563 24961564 - COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_554083 Os_TE_554083 Chr2 24961559 24961558 + COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_554084 Os_TE_554074 Chr2 24959424 24959423 - ORSgTEMT02400179 221 0.0214 (64/2994) 0 * * Os_TE_554073 Chr2 24956198 24956199 + ORSiTERTOOT00004 4000 0.0003 (1/2985) 0 * * Os_TE_554066 Chr2 24952841 24952842 - INDITTO 263 0.1381 (397/2875) 0 * Os_TE_554065 Os_TE_554065 Chr2 24952839 24952838 + INDITTO 263 0.1327 (386/2909) 0 * Os_TE_554066 Os_TE_554064 Chr2 24952663 24952662 + ORSgTEMT00502437 145 0.0004 (1/2778) 0 * Os_TE_554063 Os_TE_554063 Chr2 24952661 24952662 - ORSgTETNOOT01930 140 0.0004 (1/2359) 0 * Os_TE_554064 Os_TE_554056 Chr2 24951933 24951934 - RETRO2_LTR 12874 0.2434 (723/2970) 0 * * Os_TE_554052 Chr2 24951555 24951554 - RETROSAT3_LTR 11537 0.0245 (73/2979) 0 * * Os_TE_554049 Chr2 24951042 24951041 - RETRO2_LTR 12874 0.0247 (74/2990) 0 * * Os_TE_554043 Chr2 24950311 24950310 - ORSgTEMT00500639 148 0.0004 (1/2809) 0 * * Os_TE_554021 Chr2 24946971 24946970 - MuDR3_OS 8604 0.0030 (9/2988) 0 * Os_TE_554020 Os_TE_554020 Chr2 24946938 24946939 + MuDR3_OS 8604 0.0043 (13/2994) 0 * Os_TE_554021 Os_TE_553993 Chr2 24933299 24933300 + HARB-1_OS 5166 0.0003 (1/2953) 0 * Os_TE_553992 Os_TE_553992 Chr2 24933297 24933296 - HARB-1_OS 5166 0.0003 (1/2942) 0 * Os_TE_553993 Os_TE_553986 Chr2 24932059 24932060 + DASIA-2 1198 0.0003 (1/2909) 0 * Os_TE_553985 Os_TE_553985 Chr2 24932050 24932049 - DASIA-2 1198 0.0003 (1/2896) 0 * Os_TE_553986 Os_TE_553982 Chr2 24931809 24931808 - NDNA1TNA_OS 334 0.0163 (48/2943) 0 * Os_TE_553981 Os_TE_553981 Chr2 24931808 24931809 + NDNA1TNA_OS 334 0.0160 (47/2935) 0 * Os_TE_553982 Os_TE_553975 Chr2 24929376 24929377 - SZ-17_LTR 3387 0.0013 (4/2987) 0 * Os_TE_553974 Os_TE_553974 Chr2 24929372 24929371 + SZ-17_LTR 3387 0.0013 (4/2988) 0 * Os_TE_553975 Os_TE_553972 Chr2 24928701 24928702 + MPING 430 0.0003 (1/2992) 0 * Os_TE_553971 Os_TE_553971 Chr2 24928699 24928698 - MPING 430 0.0003 (1/2994) 0 * Os_TE_553972 Os_TE_553970 Chr2 24928530 24928529 + STOWAWAY44_OS 240 0.0003 (1/2996) 0 * * Os_TE_553958 Chr2 24923830 24923831 + TWIF 586 0.0119 (35/2933) 0 * Os_TE_553957 Os_TE_553957 Chr2 24923823 24923822 - ORSiTETNOOT00134 607 0.0143 (42/2946) 0 * Os_TE_553958 Os_TE_553948 Chr2 24922393 24922392 + MUDRN2_OS 756 0.0228 (68/2986) 0 * * Os_TE_553920 Chr2 24906936 24906937 - CASTAWAY 364 0.1417 (421/2971) 0 * Os_TE_553919 Os_TE_553919 Chr2 24906934 24906933 + ORSgTEMT00600192 355 0.1417 (420/2965) 0 * Os_TE_553920 Os_TE_553909 Chr2 24899312 24899313 - MuDR2_OS 6770 0.0058 (17/2931) 0 * * Os_TE_553907 Chr2 24896028 24896029 + SEVERIN-2 1952 0.1976 (588/2976) 0 * * Os_TE_553902 Chr2 24894348 24894349 - CLOUD 734 0.6040 (1542/2553) 0 * Os_TE_553901 Os_TE_553901 Chr2 24894341 24894340 - CLOUD 734 0.6620 (1935/2923) 0 * Os_TE_553902 Os_TE_553879 Chr2 24887349 24887350 + RETROSAT4_LTR 13504 0.0164 (48/2935) 0 * Os_TE_553878 Os_TE_553878 Chr2 24887345 24887344 - RETROSAT4_LTR 13504 0.0171 (50/2932) 0 * Os_TE_553879 Os_TE_553877 Chr2 24887239 24887238 + ORSgTEMT01602181 239 0.2587 (740/2860) 0 * Os_TE_553876 Os_TE_553876 Chr2 24887236 24887237 - ORSgTEMT01601432 239 0.0976 (235/2407) 0 * Os_TE_553877 Os_TE_553871 Chr2 24886669 24886670 - ORSgTERT00100072 275 0.0004 (1/2244) 0 * * Os_TE_553869 Chr2 24885500 24885501 - ORSgTETNOOT00053 263 0.0003 (1/2995) 0 * * Os_TE_553853 Chr2 24881551 24881550 + ORSgTEMT01602181 239 0.0010 (3/2991) 0 * * Os_TE_553850 Chr2 24880148 24880149 + RETROSAT4_LTR 13504 0.1350 (404/2993) 0 * Os_TE_553849 Os_TE_553849 Chr2 24880144 24880143 - SZ-35LTR 3853 0.1374 (411/2992) 0 * Os_TE_553850 Os_TE_553847 Chr2 24877691 24877692 + COPIA2-LTR_OS 6433 0.0003 (1/2941) 0 * Os_TE_553846 Os_TE_553846 Chr2 24877687 24877686 - COPIA2-LTR_OS 6433 0.0003 (1/2953) 0 * Os_TE_553847 Os_TE_553844 Chr2 24876537 24876536 - TRUNCATOR 2918 0.0228 (66/2896) 0 * * Os_TE_553842 Chr2 24876067 24876068 - RETRO2_LTR 12874 0.0487 (146/2996) 0 * * Os_TE_553835 Chr2 24871920 24871919 - RIREX_LTR 8828 0.0003 (1/2998) 0 * * Os_TE_553821 Chr2 24870000 24870001 + RETROSAT3_LTR 11537 0.0003 (1/2990) 0 * Os_TE_553820 Os_TE_553820 Chr2 24869996 24869995 - RETROSAT3_LTR 11537 0.0003 (1/2994) 0 * Os_TE_553821 Os_TE_553812 Chr2 24866756 24866757 - SC-8_LTR 4951 0.0003 (1/2975) 0 * Os_TE_553811 Os_TE_553811 Chr2 24866752 24866751 + SC-8_LTR 4951 0.0003 (1/2981) 0 * Os_TE_553812 Os_TE_553810 Chr2 24866714 24866713 + DS-RICE3N 525 0.0176 (52/2951) 0 * * Os_TE_553807 Chr2 24865594 24865593 + OSTE21 1271 0.1430 (427/2986) 0 * * Os_TE_553806 Chr2 24865589 24865590 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_553805 Os_TE_553805 Chr2 24865585 24865584 + COPIA2-LTR_OS 6433 0.0003 (1/2983) 0 * Os_TE_553806 Os_TE_553794 Chr2 24860123 24860124 - OSCOPIA2_LTR 5476 0.0007 (2/2826) 0 * Os_TE_553793 Os_TE_553793 Chr2 24860119 24860118 + OSCOPIA2_LTR 5476 0.0007 (2/2846) 0 * Os_TE_553794 Os_TE_553789 Chr2 24855957 24855958 - SC-3_LTR 5748 0.0003 (1/2957) 0 * Os_TE_553788 Os_TE_553788 Chr2 24855953 24855952 + ORSiTERTOOT00296 5553 0.0003 (1/2936) 0 * Os_TE_553789 Os_TE_553785 Chr2 24854712 24854713 + TELIA 141 0.0017 (5/2940) 0 * Os_TE_553784 Os_TE_553784 Chr2 24854709 24854708 - TELIA 141 0.0017 (5/2923) 0 * Os_TE_553785 Os_TE_553780 Chr2 24851312 24851311 - SC-3_LTR 5748 0.0003 (1/2969) 0 * * Os_TE_553774 Chr2 24845649 24845650 - NDNA1TNA_OS 334 0.0014 (4/2916) 0 * Os_TE_553773 Os_TE_553773 Chr2 24845647 24845646 + NDNA1TNA_OS 334 0.0014 (4/2904) 0 * Os_TE_553774 Os_TE_553769 Chr2 24843455 24843456 - ORSgTEMT00600085 364 0.0024 (6/2545) 0 * * Os_TE_553763 Chr2 24841986 24841987 + AMYLTP 383 0.0003 (1/2936) 0 * Os_TE_553762 Os_TE_553762 Chr2 24841977 24841976 - AMYLTP 383 0.0003 (1/2935) 0 * Os_TE_553763 Os_TE_553761 Chr2 24840395 24840396 - ORSgTEMT00600085 364 0.0003 (1/2988) 0 * Os_TE_553760 Os_TE_553760 Chr2 24840394 24840393 + CASTAWAY 364 0.0003 (1/2984) 0 * Os_TE_553761 Os_TE_553755 Chr2 24839364 24839363 + AMYLTP 383 0.0018 (5/2774) 0 * * Os_TE_553745 Chr2 24836387 24836386 + STOWAWAY51_OS 246 0.0010 (3/2975) 0 * Os_TE_553744 Os_TE_553744 Chr2 24836381 24836382 - STOWAWAY51_OS 246 0.0010 (3/2986) 0 * Os_TE_553745 Os_TE_553742 Chr2 24836109 24836110 - OLO24 345 0.0338 (101/2992) 0 * Os_TE_553741 Os_TE_553741 Chr2 24836107 24836106 + OLO24 345 0.0341 (102/2991) 0 * Os_TE_553742 Os_TE_553717 Chr2 24827598 24827597 - TELIA 141 0.0003 (1/2953) 0 * * Os_TE_553702 Chr2 24821138 24821139 + RETRO1_LTR 8314 0.0142 (42/2958) 0 * Os_TE_553701 Os_TE_553701 Chr2 24821134 24821133 - RETRO2A_LTR 12895 0.0145 (43/2965) 0 * Os_TE_553702 Os_TE_553696 Chr2 24818749 24818748 + ORSgTETNOOT00032 218 0.0007 (2/2999) 0 * * Os_TE_553677 Chr2 24806148 24806147 + TRUNCATOR 2918 0.0004 (1/2695) 0 * Os_TE_553676 Os_TE_553676 Chr2 24806147 24806148 - TRUNCATOR 2918 0.0030 (8/2703) 0 * Os_TE_553677 Os_TE_553654 Chr2 24794409 24794408 + STOWAWAY45_OS 266 0.0010 (3/2980) 0 * Os_TE_553653 Os_TE_553653 Chr2 24794406 24794407 - STOWAWAY45_OS 266 0.0007 (2/2980) 0 * Os_TE_553654 Os_TE_553652 Chr2 24794376 24794377 - STOWAWAY11_OS 292 0.0013 (4/2982) 0 * Os_TE_553651 Os_TE_553651 Chr2 24794375 24794374 + STOWAWAY11_OS 292 0.0007 (2/2990) 0 * Os_TE_553652 Os_TE_553650 Chr2 24794273 24794274 - TELIA 141 0.0003 (1/2961) 0 * Os_TE_553649 Os_TE_553649 Chr2 24794265 24794264 + TELIA 141 0.0003 (1/2965) 0 * Os_TE_553650 Os_TE_553624 Chr2 24788026 24788027 - COPI2_LTR 4733 0.0003 (1/2991) 0 * * Os_TE_553622 Chr2 24787486 24787487 + ORSiTEMT00300001 383 0.0147 (44/2984) 0 * Os_TE_553621 Os_TE_553621 Chr2 24787480 24787479 + ORSgTEMT00300063 413 0.0148 (44/2980) 0 * Os_TE_553622 Os_TE_553620 Chr2 24787451 24787452 - SZ-9LTR 965 0.0017 (5/2993) 0 * Os_TE_553619 Os_TE_553619 Chr2 24787447 24787446 + SZ-9LTR 965 0.0017 (5/2991) 0 * Os_TE_553620 Os_TE_553612 Chr2 24785695 24785696 + TNR2A 152 0.0057 (17/2998) 0 * Os_TE_553611 Os_TE_553611 Chr2 24785679 24785678 + TNR2A 152 0.0057 (17/2997) 0 * Os_TE_553612 Os_TE_553610 Chr2 24785249 24785250 - SZ-54_LTR 5203 0.0292 (87/2984) 0 * * Os_TE_553608 Chr2 24783335 24783336 + ORSiTERTOOT00226 792 0.0010 (3/2973) 0 * Os_TE_553607 Os_TE_553607 Chr2 24783331 24783330 - SZ-22_LTR 4403 0.0010 (3/2993) 0 * Os_TE_553608 Os_TE_553604 Chr2 24779926 24779927 - OSTE33 1012 0.0739 (219/2965) 0 * * Os_TE_553603 Chr2 24779901 24779902 + ORSgTEMT00300063 413 0.0057 (17/2969) 0 * Os_TE_553602 Os_TE_553602 Chr2 24779894 24779893 + ORSgTEMT00300069 394 0.0068 (20/2936) 0 * Os_TE_553603 Os_TE_553601 Chr2 24779867 24779868 + MuDR3_OS 8604 0.0047 (14/2970) 0 * * Os_TE_553566 Chr2 24757056 24757057 + RETROSAT2LTR 12796 0.0429 (125/2916) 0 * Os_TE_553565 Os_TE_553565 Chr2 24757053 24757052 - RETROSAT2LTR 12796 0.0581 (171/2945) 0 * Os_TE_553566 Os_TE_553564 Chr2 24756992 24756991 + ORSgTERT00200063 5773 0.0003 (1/2952) 0 * * Os_TE_553549 Chr2 24755368 24755367 + MuDR4_OS 7610 0.0027 (8/2956) 0 * * Os_TE_553520 Chr2 24741192 24741193 - RETRO1_LTR 8314 0.0138 (41/2976) 0 * * Os_TE_553518 Chr2 24740901 24740900 - RIREX_LTR 8828 0.0010 (3/2938) 0 * * Os_TE_553514 Chr2 24740442 24740443 + RIRE2_LTR 11306 0.0155 (44/2838) 0 * Os_TE_553513 Os_TE_553513 Chr2 24740438 24740437 - RIRE2_LTR 11306 0.0142 (40/2812) 0 * Os_TE_553514 Os_TE_553510 Chr2 24739642 24739641 + AMYLTP 383 0.0448 (47/1050) 0 * * Os_TE_553506 Chr2 24737069 24737070 + HARB-1_OS 5166 0.0003 (1/2999) 0 * Os_TE_553505 Os_TE_553505 Chr2 24737067 24737066 - HARB-1_OS 5166 0.0003 (1/2998) 0 * Os_TE_553506 Os_TE_553504 Chr2 24735816 24735817 + RIREX_LTR 8828 0.0017 (5/2995) 0 * Os_TE_553503 Os_TE_553503 Chr2 24735812 24735811 - RIREX_LTR 8828 0.0017 (5/2993) 0 * Os_TE_553504 Os_TE_553493 Chr2 24734508 24734509 + NDNA1TNA_OS 334 0.0054 (16/2978) 0 * * Os_TE_553489 Chr2 24733649 24733650 + OLO24 345 0.0337 (100/2968) 0 * Os_TE_553488 Os_TE_553488 Chr2 24733647 24733646 - OLO24 345 0.0334 (99/2963) 0 * Os_TE_553489 Os_TE_553487 Chr2 24733522 24733521 - OSTE33 1012 0.0091 (27/2970) 0 * * Os_TE_553486 Chr2 24733202 24733203 - F770 284 0.0032 (9/2844) 0 * Os_TE_553485 Os_TE_553485 Chr2 24733200 24733199 + F770 284 0.0039 (11/2836) 0 * Os_TE_553486 Os_TE_553459 Chr2 24722133 24722134 + OLO24 345 0.0053 (16/2994) 0 * Os_TE_553458 Os_TE_553458 Chr2 24722131 24722130 - OLO24 345 0.0053 (16/2997) 0 * Os_TE_553459 Os_TE_553437 Chr2 24711274 24711273 + TOS17LTR 138 0.0003 (1/2986) 0 * * Os_TE_553436 Chr2 24711024 24711025 - SC-3_LTR 5748 0.0003 (1/2979) 0 * Os_TE_553435 Os_TE_553435 Chr2 24711020 24711019 + ORSiTERTOOT00296 5553 0.0003 (1/2983) 0 * Os_TE_553436 Os_TE_553417 Chr2 24706755 24706754 + Cassandra_OS-LTR 764 0.0416 (70/1683) -1 * * Os_TE_553408 Chr2 24704486 24704487 + RIRE2_LTR 11306 0.0438 (131/2988) 0 * * Os_TE_553395 Chr2 24701811 24701812 - ORSiTETNOOT00216 3569 0.0014 (4/2959) 0 * Os_TE_553394 Os_TE_553394 Chr2 24701804 24701803 + TWIFBIG 3567 0.0017 (5/2972) 0 * Os_TE_553395 Os_TE_553392 Chr2 24700548 24700549 - ORSgTETNOOT00053 263 0.0007 (2/2967) 0 * Os_TE_553391 Os_TE_553391 Chr2 24700546 24700545 - INDITTO 263 0.0007 (2/2961) 0 * Os_TE_553392 Os_TE_553365 Chr2 24690313 24690312 - RETRO1_LTR 8314 0.0065 (15/2323) 0 * * Os_TE_553364 Chr2 24690277 24690278 + ORSiTEMT03300001 145 0.0004 (1/2683) -1 * * Os_TE_553360 Chr2 24690018 24690017 + RETRO2A_LTR 12895 0.0040 (11/2778) 0 * * Os_TE_553354 Chr2 24689484 24689483 + STOWAWAY51_OS 246 0.0149 (44/2955) 0 * * Os_TE_553349 Chr2 24689228 24689227 - RIREX_LTR 8828 0.0003 (1/2997) 0 * * Os_TE_553342 Chr2 24687519 24687518 - DNAUN1_OS 408 0.0007 (2/2995) 0 * * Os_TE_553339 Chr2 24683450 24683059 + TYPEU4 402 0.7104 (2080/2928) 1 Intact * Os_TE_553337 Chr2 24683059 24683450 - TYPEU1 380 0.5105 (1381/2705) 1 Intact * Os_TE_553333 Chr2 24680827 24680828 - ORSgTEMT01600650 234 0.0107 (32/2995) 0 * Os_TE_553332 Os_TE_553332 Chr2 24680825 24680824 - ORSgTEMT01601493 303 0.0103 (31/2997) 0 * Os_TE_553333 Os_TE_553331 Chr2 24680821 24680822 - ORSgTEMT01601696 238 0.0107 (32/2996) 0 * * Os_TE_553319 Chr2 24677700 24677699 + CACTA-B 1103 0.0072 (21/2930) 0 * Os_TE_553318 Os_TE_553318 Chr2 24677696 24677697 + ORSgTETN00200005 1121 0.0075 (22/2922) 0 * Os_TE_553319 Os_TE_553317 Chr2 24677219 24677220 - INDITTO 263 0.0064 (19/2992) 0 * Os_TE_553316 Os_TE_553316 Chr2 24677217 24677216 + INDITTO 263 0.0067 (20/2994) 0 * Os_TE_553317 Os_TE_553314 Chr2 24676388 24676387 - TNR2A 152 0.0157 (47/2988) 0 * * Os_TE_553305 Chr2 24673705 24673704 - F770 284 0.0447 (133/2977) 0 * * Os_TE_553304 Chr2 24673629 24673630 + INDITTO 263 0.0028 (8/2830) 0 * Os_TE_553303 Os_TE_553303 Chr2 24673627 24673626 - INDITTO 263 0.0028 (8/2866) 0 * Os_TE_553304 Os_TE_553302 Chr2 24673494 24673495 + F770 284 0.0452 (133/2945) 0 * * Os_TE_553289 Chr2 24668140 24668139 + STOWAWAY21_OS 243 0.0010 (3/2991) 0 * Os_TE_553288 Os_TE_553288 Chr2 24668139 24668140 + ORSgTEMT01601122 212 0.0013 (4/2991) 0 * Os_TE_553289 Os_TE_553263 Chr2 24664159 24664160 + RIREX_LTR 8828 0.0094 (28/2972) 0 * Os_TE_553262 Os_TE_553262 Chr2 24664155 24664154 - RIREX_LTR 8828 0.0094 (28/2976) 0 * Os_TE_553263 Os_TE_553261 Chr2 24664027 24664028 - RIRE2_LTR 11306 0.0010 (3/2964) 0 * Os_TE_553260 Os_TE_553260 Chr2 24664023 24664022 + RIRE2_LTR 11306 0.0010 (3/2961) 0 * Os_TE_553261 Os_TE_553259 Chr2 24663824 24663825 - RIREX_LTR 8828 0.0003 (1/2979) 0 * Os_TE_553258 Os_TE_553258 Chr2 24663817 24663816 - RIRE3A_LTR 10580 0.0010 (3/2986) 0 * Os_TE_553259 Os_TE_553257 Chr2 24663785 24663786 - RETRO1_LTR 8314 0.0128 (38/2968) 0 * Os_TE_553256 Os_TE_553256 Chr2 24663781 24663780 + RETRO2A_LTR 12895 0.0128 (38/2966) 0 * Os_TE_553257 Os_TE_553252 Chr2 24663677 24663678 + RETRO2A_LTR 12895 0.0353 (99/2802) 0 * * Os_TE_553250 Chr2 24663648 24663649 - RETRO2_LTR 12874 0.1556 (457/2937) 0 * * Os_TE_553246 Chr2 24662968 24662969 - RETROSAT2LTRA 3112 0.0004 (1/2574) -1 * * Os_TE_553233 Chr2 24661715 24661714 + ORSgTETNOOT02406 265 0.0093 (27/2907) 0 * * Os_TE_553210 Chr2 24656400 24656399 - ORSgTEMT00100578 341 0.0324 (97/2990) 0 * Os_TE_553209 Os_TE_553209 Chr2 24656399 24656400 + ORSgTEMT00100531 325 0.0318 (95/2983) 0 * Os_TE_553210 Os_TE_553208 Chr2 24656390 24656391 + OLO24 345 0.0033 (10/2994) 0 * Os_TE_553207 Os_TE_553207 Chr2 24656388 24656387 - OLO24 345 0.0034 (10/2911) 0 * Os_TE_553208 Os_TE_553206 Chr2 24656349 24656350 + NDNA1TNA_OS 334 0.0017 (5/2985) 0 * * Os_TE_553205 Chr2 24655460 24655459 + STOLAB 312 0.0019 (5/2690) 0 * * Os_TE_553204 Chr2 24655267 24655268 + OLO24 345 0.0004 (1/2669) 0 * Os_TE_553203 Os_TE_553203 Chr2 24655265 24655264 - OLO24 345 0.0004 (1/2686) 0 * Os_TE_553204 Os_TE_553202 Chr2 24655252 24655253 + ORSgTEMT00600376 329 0.0015 (4/2669) 0 * * Os_TE_553174 Chr2 24651623 24651622 - STOWAWAY51_OS 246 0.0010 (3/2985) 0 * Os_TE_553173 Os_TE_553173 Chr2 24651617 24651618 + STOWAWAY51_OS 246 0.0010 (3/2983) 0 * Os_TE_553174 Os_TE_553172 Chr2 24651294 24651293 + F1275 157 0.0003 (1/2983) 0 * * Os_TE_553163 Chr2 24649623 24649624 - OLO24 345 0.0003 (1/2879) 0 * Os_TE_553162 Os_TE_553162 Chr2 24649621 24649620 + OLO24 345 0.0003 (1/2881) 0 * Os_TE_553163 Os_TE_553156 Chr2 24645309 24644963 + ORSgTEMT00100291 345 0.6559 (1963/2993) 1 Intact Os_TE_553152 Os_TE_553152 Chr2 24644962 24645308 - ORSgTEMT00101173 343 0.6499 (1923/2959) 1 Intact Os_TE_553156 Os_TE_553151 Chr2 24644775 24644776 + RETRO1_LTR 8314 0.0137 (27/1972) 0 * Os_TE_553150 Os_TE_553150 Chr2 24644771 24644770 - RETRO1_LTR 8314 0.0128 (25/1949) 0 * Os_TE_553151 Os_TE_553148 Chr2 24641680 24641681 - RIRE2_LTR 11306 0.0244 (68/2789) 0 * * Os_TE_553146 Chr2 24640626 24640627 - ORSgTEMT02000041 194 0.0233 (67/2881) 0 * * Os_TE_553143 Chr2 24640161 24640160 + TRUNCATOR 2918 0.0014 (4/2941) 0 * * Os_TE_553138 Chr2 24639846 24639845 + RETRO1_LTR 8314 0.0057 (17/2994) 0 * * Os_TE_553128 Chr2 24639197 24639198 - RIRE2_LTR 11306 0.0010 (3/2942) 0 * * Os_TE_553122 Chr2 24638606 24638607 - RETRO1_LTR 8314 0.0031 (9/2898) 0 * Os_TE_553121 Os_TE_553121 Chr2 24638602 24638601 + RETRO2A_LTR 12895 0.0031 (9/2929) 0 * Os_TE_553122 Os_TE_553114 Chr2 24636499 24636500 + RIREX_LTR 8828 0.0022 (6/2737) 0 * Os_TE_553113 Os_TE_553113 Chr2 24636495 24636494 - RIREX_LTR 8828 0.0025 (7/2787) 0 * Os_TE_553114 Os_TE_553112 Chr2 24635083 24635084 - TRUNCATOR2_LTR 2904 0.0151 (42/2787) 0 * * Os_TE_553109 Chr2 24635053 24635052 - RETRO2_LTR 12874 0.2776 (824/2968) 0 * * Os_TE_553098 Chr2 24633091 24633092 + RETRO2A_LTR 12895 0.0041 (12/2952) 0 * Os_TE_553097 Os_TE_553097 Chr2 24633087 24633086 - RETRO2A_LTR 12895 0.0041 (12/2956) 0 * Os_TE_553098 Os_TE_553095 Chr2 24631939 24631940 + RIREX_LTR 8828 0.0034 (10/2943) 0 * Os_TE_553094 Os_TE_553094 Chr2 24631935 24631934 - RIREX_LTR 8828 0.0034 (10/2949) 0 * Os_TE_553095 Os_TE_553092 Chr2 24631380 24631379 - SZ-7A_LTR 11400 0.0024 (7/2906) 0 * * Os_TE_553090 Chr2 24630661 24630662 + RIREX_LTR 8828 0.0091 (26/2842) 0 * Os_TE_553089 Os_TE_553089 Chr2 24630657 24630656 - RIREX_LTR 8828 0.0081 (23/2845) 0 * Os_TE_553090 Os_TE_553088 Chr2 24630563 24630564 + RETROSAT4_LTR 13504 0.0047 (14/2956) 0 * Os_TE_553087 Os_TE_553087 Chr2 24630559 24630558 - SZ-35LTR 3853 0.0058 (17/2939) 0 * Os_TE_553088 Os_TE_553086 Chr2 24630409 24630410 + RETRO2_LTR 12874 0.0085 (25/2941) 0 * Os_TE_553085 Os_TE_553085 Chr2 24630405 24630404 - RETRO2_LTR 12874 0.0081 (24/2946) 0 * Os_TE_553086 Os_TE_553084 Chr2 24630279 24630280 + RETRO1_LTR 8314 0.0348 (100/2876) 0 * Os_TE_553083 Os_TE_553083 Chr2 24630275 24630274 - RETRO1_LTR 8314 0.0343 (99/2890) 0 * Os_TE_553084 Os_TE_553076 Chr2 24629879 24629880 + RETRO1_LTR 8314 0.0085 (25/2952) 0 * * Os_TE_553072 Chr2 24629267 24629266 + COPIA2-LTR_OS 6433 0.0003 (1/2969) 0 * * Os_TE_553071 Chr2 24628895 24628894 - ORSgTEMT03800066 376 0.0007 (2/2948) 0 * * Os_TE_553070 Chr2 24626480 24626481 + RETROSAT4_LTR 13504 0.0004 (1/2597) 0 * * Os_TE_553057 Chr2 24624001 24624002 - SZ-40LTR 2465 0.0004 (1/2813) 0 * * Os_TE_553055 Chr2 24623680 24623679 - TRUNCATOR 2918 0.0031 (8/2586) 0 * * Os_TE_552995 Chr2 24597908 24597907 + TRUNCATOR 2918 0.1227 (367/2990) 0 * Os_TE_552994 Os_TE_552994 Chr2 24597907 24597908 - TRUNCATOR 2918 0.1196 (357/2986) 0 * Os_TE_552995 Os_TE_552991 Chr2 24597031 24597032 - RIRE2_LTR 11306 0.0651 (195/2995) 0 * Os_TE_552990 Os_TE_552990 Chr2 24597027 24597026 - ORSgTERT00201216 11284 0.0642 (192/2991) 0 * Os_TE_552991 Os_TE_552988 Chr2 24595470 24595471 + COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_552987 Os_TE_552987 Chr2 24595466 24595465 - COPI2_LTR 4733 0.0003 (1/2997) 0 * Os_TE_552988 Os_TE_552985 Chr2 24594656 24594657 + ENSPM6_OS 9815 0.0654 (194/2965) 0 * Os_TE_552984 Os_TE_552984 Chr2 24594654 24594653 - ENSPM6_OS 9815 0.0672 (199/2961) 0 * Os_TE_552985 Os_TE_552983 Chr2 24594456 24594457 - COPI2_LTR 4733 0.0010 (3/2979) 0 * Os_TE_552982 Os_TE_552982 Chr2 24594452 24594451 + COPI2_LTR 4733 0.0010 (3/2944) 0 * Os_TE_552983 Os_TE_552974 Chr2 24593327 24593328 - SZ-35LTR 3853 0.0132 (14/1062) -1 * * Os_TE_552967 Chr2 24591715 24591716 - OLO24 345 0.0003 (1/2998) 0 * Os_TE_552966 Os_TE_552966 Chr2 24591713 24591712 + OLO24 345 0.0003 (1/2979) 0 * Os_TE_552967 Os_TE_552965 Chr2 24591612 24591613 + OLO24 345 0.0003 (1/2997) 0 * Os_TE_552964 Os_TE_552964 Chr2 24591610 24591609 - OLO24 345 0.0003 (1/2998) 0 * Os_TE_552965 Os_TE_552961 Chr2 24588709 24588710 - ORSgTEMT00600085 364 0.0348 (104/2987) 0 * Os_TE_552960 Os_TE_552960 Chr2 24588707 24588706 + CASTAWAY 364 0.0353 (105/2977) 0 * Os_TE_552961 Os_TE_552958 Chr2 24588204 24588205 - SZ-35LTR 3853 0.0065 (19/2945) 0 * Os_TE_552957 Os_TE_552957 Chr2 24588200 24588199 + RETROSAT4_LTR 13504 0.0065 (19/2942) 0 * Os_TE_552958 Os_TE_552956 Chr2 24587533 24587534 + SPMLIKE 10989 0.0003 (1/2893) 0 * * Os_TE_552950 Chr2 24586917 24586918 - ENSPM6_OS 9815 0.0037 (11/2991) 0 * Os_TE_552949 Os_TE_552949 Chr2 24586915 24586914 + ENSPM6_OS 9815 0.0040 (12/2990) 0 * Os_TE_552950 Os_TE_552948 Chr2 24586784 24586785 - INDITTO 263 0.0010 (3/2996) 0 * Os_TE_552947 Os_TE_552947 Chr2 24586782 24586781 + INDITTO 263 0.0010 (3/2992) 0 * Os_TE_552948 Os_TE_552944 Chr2 24585812 24585813 + F770 284 0.1043 (312/2990) 0 * * Os_TE_552943 Chr2 24585769 24585770 + OLO24 345 0.0347 (104/2993) 0 * Os_TE_552942 Os_TE_552942 Chr2 24585767 24585766 - OLO24 345 0.0348 (104/2990) 0 * Os_TE_552943 Os_TE_552941 Chr2 24585707 24585708 + AMYLTP 383 0.0030 (9/2996) 0 * Os_TE_552940 Os_TE_552940 Chr2 24585699 24585698 - AMYLTP 383 0.0030 (9/2974) 0 * Os_TE_552941 Os_TE_552927 Chr2 24583025 24583026 + RIRE3A_LTR 10580 0.0003 (1/2987) 0 * Os_TE_552926 Os_TE_552926 Chr2 24583021 24583020 - RIRE3A_LTR 10580 0.0003 (1/2984) 0 * Os_TE_552927 Os_TE_552922 Chr2 24581758 24581759 + RIREX_LTR 8828 0.0023 (7/2997) 0 * Os_TE_552921 Os_TE_552921 Chr2 24581754 24581753 - RIREX_LTR 8828 0.0020 (6/2998) 0 * Os_TE_552922 Os_TE_552920 Chr2 24580816 24580817 + OSTONOR1_LTR 6440 0.0027 (8/2984) 0 * Os_TE_552919 Os_TE_552919 Chr2 24580812 24580811 - ORSiTERT00100062 5674 0.0027 (8/2984) 0 * Os_TE_552920 Os_TE_552917 Chr2 24579590 24579591 - OSTE20 496 0.0128 (38/2979) 0 * Os_TE_552916 Os_TE_552916 Chr2 24579588 24579587 - OSTE20 496 0.0114 (34/2975) 0 * Os_TE_552917 Os_TE_552913 Chr2 24577079 24577080 + RIREX_LTR 8828 0.0241 (72/2991) 0 * * Os_TE_552907 Chr2 24575920 24575921 - OSTE20 496 0.0003 (1/2945) 0 * Os_TE_552906 Os_TE_552906 Chr2 24575916 24575915 - OSTE20 496 0.0003 (1/2946) 0 * Os_TE_552907 Os_TE_552904 Chr2 24575616 24575615 - RIREX_LTR 8828 0.0044 (13/2940) 0 * * Os_TE_552901 Chr2 24575492 24575491 - OSTE24 683 0.0543 (159/2928) 0 * * Os_TE_552887 Chr2 24573478 24573479 - HARB-1_OS 5166 0.0003 (1/2997) 0 * Os_TE_552886 Os_TE_552886 Chr2 24573476 24573475 + HARB-1_OS 5166 0.0003 (1/2997) 0 * Os_TE_552887 Os_TE_552885 Chr2 24570953 24570952 + STOWAWAY51_OS 246 0.0007 (2/2996) 0 * * Os_TE_552884 Chr2 24569177 24569178 + ORSgTEMT00300063 413 0.8238 (2212/2685) 0 * * Os_TE_552883 Chr2 24569174 24569173 + OLO24 345 0.0593 (176/2966) 0 * * Os_TE_552877 Chr2 24567787 24567788 + MPING 430 0.0003 (1/2993) 0 * Os_TE_552876 Os_TE_552876 Chr2 24567785 24567784 - MPING 430 0.0003 (1/2996) 0 * Os_TE_552877 Os_TE_552875 Chr2 24567060 24567061 - SZ-22_LTR 4403 0.0003 (1/2994) 0 * Os_TE_552874 Os_TE_552874 Chr2 24567056 24567055 + ORSiTERTOOT00226 792 0.0003 (1/2994) 0 * Os_TE_552875 Os_TE_552873 Chr2 24566970 24566971 + OSTONOR1_LTR 6440 0.0003 (1/2995) 0 * Os_TE_552872 Os_TE_552872 Chr2 24566966 24566965 - OSTONOR1_LTR 6440 0.0003 (1/2995) 0 * Os_TE_552873 Os_TE_552871 Chr2 24566822 24566823 - RIREX_LTR 8828 0.0003 (1/2990) 0 * Os_TE_552870 Os_TE_552870 Chr2 24566818 24566817 + RIREX_LTR 8828 0.0003 (1/2989) 0 * Os_TE_552871 Os_TE_552865 Chr2 24565424 24565425 + HARB-1_OS 5166 0.0003 (1/2933) 0 * * Os_TE_552858 Chr2 24563920 24563921 + F770 284 0.0007 (2/2991) 0 * Os_TE_552857 Os_TE_552857 Chr2 24563918 24563917 - F770 284 0.0007 (2/2993) 0 * Os_TE_552858 Os_TE_552856 Chr2 24561025 24561026 + MDR2 6967 0.0003 (1/2979) 0 * Os_TE_552855 Os_TE_552855 Chr2 24561017 24561016 - MDR2 6967 0.0003 (1/2977) 0 * Os_TE_552856 Os_TE_552849 Chr2 24559829 24559830 - RETROSAT2LTR 12796 0.0059 (13/2222) 0 * * Os_TE_552845 Chr2 24557550 24559599 - GYPSI_LTR 18003 0.8826 (2631/2981) 1 Solo_LTR * Os_TE_552844 Chr2 24557269 24557270 - MDR2 6967 0.0098 (29/2963) 0 * Os_TE_552843 Os_TE_552843 Chr2 24557261 24557260 + MDR2 6967 0.0108 (32/2956) 0 * Os_TE_552844 Os_TE_552842 Chr2 24556548 24556549 + RIREX_LTR 8828 0.0024 (7/2946) 0 * * Os_TE_552841 Chr2 24556518 24556519 + ORSgTEMT00101341 314 0.0944 (282/2987) 0 * Os_TE_552840 Os_TE_552840 Chr2 24556517 24556516 - NDNA1TNA_OS 334 0.0859 (255/2968) 0 * Os_TE_552841 Os_TE_552838 Chr2 24556175 24556176 + CACTA-H 1152 0.0057 (17/2992) 0 * * Os_TE_552836 Chr2 24556110 24556109 - OSTE24 683 0.0010 (3/2966) 0 * * Os_TE_552826 Chr2 24555373 24555374 - NDNA1TNA_OS 334 0.0268 (78/2907) 0 * Os_TE_552825 Os_TE_552825 Chr2 24555371 24555370 + NDNA1TNA_OS 334 0.0228 (66/2899) 0 * Os_TE_552826 Os_TE_552824 Chr2 24555351 24555352 + RIRE2_LTR 11306 0.0003 (1/2946) 0 * Os_TE_552823 Os_TE_552823 Chr2 24555347 24555346 - RIRE2_LTR 11306 0.0003 (1/2932) 0 * Os_TE_552824 Os_TE_552822 Chr2 24554818 24554819 + COPIA2-LTR_OS 6433 0.0003 (1/2983) 0 * Os_TE_552821 Os_TE_552821 Chr2 24554814 24554813 - COPIA2-LTR_OS 6433 0.0003 (1/2979) 0 * Os_TE_552822 Os_TE_552818 Chr2 24553768 24553769 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_552817 Os_TE_552817 Chr2 24553764 24553763 - COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_552818 Os_TE_552811 Chr2 24552704 24552705 - CLOUD 734 0.0563 (168/2985) 0 * Os_TE_552810 Os_TE_552810 Chr2 24552696 24552695 - CLOUD 734 0.0579 (173/2986) 0 * Os_TE_552811 Os_TE_552809 Chr2 24552662 24552663 + INDITTO 263 0.0003 (1/2994) 0 * Os_TE_552808 Os_TE_552808 Chr2 24552660 24552659 - INDITTO 263 0.0003 (1/2984) 0 * Os_TE_552809 Os_TE_552806 Chr2 24552600 24552599 + STOWAWAY51_OS 246 0.0064 (19/2991) 0 * * Os_TE_552801 Chr2 24552324 24552325 - TYPEM 227 0.0007 (2/2958) 0 * * Os_TE_552800 Chr2 24552315 24552316 + DS-RICE3N 525 0.0010 (3/2973) 0 * * Os_TE_552798 Chr2 24552207 24552208 - TOURIST-XI 219 0.0814 (240/2950) 0 * * Os_TE_552797 Chr2 24552094 24552095 + ORSgTETNOOT00908 242 0.0088 (26/2949) 0 * * Os_TE_552795 Chr2 24551451 24551452 + COPIA2-LTR_OS 6433 0.0831 (127/1529) 0 * Os_TE_552794 Os_TE_552794 Chr2 24551447 24551446 - COPIA2-LTR_OS 6433 0.0839 (249/2969) 0 * Os_TE_552795 Os_TE_552793 Chr2 24551434 24551435 + RIRE2_LTR 11306 0.0003 (1/2964) 0 * * Os_TE_552792 Chr2 24551335 24551334 + OSTE15 1168 0.0020 (6/2955) 0 * * Os_TE_552787 Chr2 24550784 24550783 - TYPEM 227 0.0007 (2/2854) 0 * Os_TE_552786 Os_TE_552786 Chr2 24550783 24550784 + ORSgTEMT02400206 225 0.0007 (2/2908) 0 * Os_TE_552787 Os_TE_552785 Chr2 24550345 24550346 - ORSgTEMT02400179 221 0.0134 (40/2994) 0 * Os_TE_552784 Os_TE_552784 Chr2 24550344 24550343 - TYPEM 227 0.0130 (39/2993) 0 * Os_TE_552785 Os_TE_552761 Chr2 24540454 24540453 - OSTE18 129 0.0017 (5/2994) 0 * Os_TE_552760 Os_TE_552760 Chr2 24540450 24540451 + OSTE18 129 0.0017 (5/2995) 0 * Os_TE_552761 Os_TE_552759 Chr2 24540313 24540314 - MuDR2_OS 6770 0.0024 (7/2954) 0 * Os_TE_552758 Os_TE_552758 Chr2 24540304 24540303 + MuDR2_OS 6770 0.0041 (12/2949) 0 * Os_TE_552759 Os_TE_552753 Chr2 24532928 24532927 + ORSgTETNOOT01668 244 0.0003 (1/2993) 0 * * Os_TE_552741 Chr2 24528369 24528370 - TYPEU1 380 0.0080 (24/2996) 0 * Os_TE_552740 Os_TE_552740 Chr2 24528361 24528360 + TYPEU4 402 0.0077 (23/2996) 0 * Os_TE_552741 Os_TE_552734 Chr2 24523644 24523645 + DS-RICE2N 613 0.0302 (90/2983) 0 * Os_TE_552733 Os_TE_552733 Chr2 24523637 24523636 - DS-RICE2N 613 0.0292 (87/2982) 0 * Os_TE_552734 Os_TE_552726 Chr2 24518319 24518320 - MuDR4_OS 7610 0.0040 (12/2976) 0 * * Os_TE_552724 Chr2 24518224 24518225 - TESSBIG 4057 0.0057 (17/2985) 0 * Os_TE_552723 Os_TE_552723 Chr2 24518217 24518216 + TESSBIG 4057 0.0040 (12/2985) 0 * Os_TE_552724 Os_TE_552718 Chr2 24515876 24515875 - TYPEM 227 0.0113 (34/2996) 0 * Os_TE_552717 Os_TE_552717 Chr2 24515875 24515876 - ORSgTEMT02400246 177 0.0110 (33/2995) 0 * Os_TE_552718 Os_TE_552702 Chr2 24513056 24513055 + ORSgTEMT01800100 438 0.0048 (14/2900) 0 * * Os_TE_552697 Chr2 24511574 24511573 + OSTE20 496 0.0515 (151/2932) 0 * * Os_TE_552694 Chr2 24511146 24511147 - NDNA1TNA_OS 334 0.0003 (1/2956) 0 * Os_TE_552693 Os_TE_552693 Chr2 24511144 24511143 + NDNA1TNA_OS 334 0.0004 (1/2813) 0 * Os_TE_552694 Os_TE_552689 Chr2 24510395 24510396 + OSMU5 4881 0.0003 (1/2994) 0 * Os_TE_552688 Os_TE_552688 Chr2 24510391 24510390 - OSTE15 1168 0.0003 (1/2985) 0 * Os_TE_552689 Os_TE_552673 Chr2 24509455 24509456 + RETRO1_LTR 8314 0.0041 (12/2954) 0 * Os_TE_552672 Os_TE_552672 Chr2 24509451 24509450 - RETRO1_LTR 8314 0.0040 (12/2976) 0 * Os_TE_552673 Os_TE_552670 Chr2 24509225 24509226 + ORSgTETNOOT00032 218 0.0050 (15/2984) 0 * * Os_TE_552669 Chr2 24509084 24509085 + ORSiTERTOOT00226 792 0.0003 (1/2992) 0 * * Os_TE_552648 Chr2 24506147 24506148 - TYPEM 227 0.0024 (6/2461) 0 * Os_TE_552647 Os_TE_552647 Chr2 24506146 24506145 - ORSgTEMT02400179 221 0.0022 (6/2678) 0 * Os_TE_552648 Os_TE_552645 Chr2 24505982 24505983 - CACTA-M 1129 0.0032 (8/2511) 0 * Os_TE_552644 Os_TE_552644 Chr2 24505980 24505979 + CACTA-I 1124 0.0012 (3/2517) 0 * Os_TE_552645 Os_TE_552635 Chr2 24503778 24503779 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_552634 Os_TE_552634 Chr2 24503774 24503773 - COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_552635 Os_TE_552631 Chr2 24503554 24503553 + ORSgTEMT01601591 242 0.0003 (1/2995) 0 * Os_TE_552630 Os_TE_552630 Chr2 24503551 24503552 + ORSgTEMT01601591 242 0.0003 (1/2995) 0 * Os_TE_552631 Os_TE_552629 Chr2 24503265 24503264 + DS-RICE3N 525 0.0010 (3/2977) 0 * * Os_TE_552628 Chr2 24502972 24502971 - RIRE2_LTR 11306 0.0010 (3/2971) 0 * * Os_TE_552626 Chr2 24502138 24502137 - OSTE33 1012 0.0003 (1/2990) 0 * * Os_TE_552622 Chr2 24500018 24500017 - TYPEM 227 0.0239 (71/2976) 0 * * Os_TE_552619 Chr2 24499051 24499052 + SC-7_LTR 4431 0.0292 (87/2982) 0 * Os_TE_552618 Os_TE_552618 Chr2 24499047 24499046 - SC-7_LTR 4431 0.0294 (88/2989) 0 * Os_TE_552619 Os_TE_552617 Chr2 24497883 24497884 - GYPSY-A_LTR 8951 0.0010 (3/2992) 0 * Os_TE_552616 Os_TE_552616 Chr2 24497879 24497878 - SZ-40LTR 2465 0.0007 (2/2990) 0 * Os_TE_552617 Os_TE_552603 Chr2 24488302 24488301 - STOWAWAY44_OS 240 0.0071 (21/2969) 0 * Os_TE_552602 Os_TE_552602 Chr2 24488299 24488300 + STOWAWAY44_OS 240 0.0057 (17/2963) 0 * Os_TE_552603 Os_TE_552595 Chr2 24486372 24486373 - CASGRANDA 465 0.0003 (1/2979) 0 * Os_TE_552594 Os_TE_552594 Chr2 24486370 24486369 + CASGRANDA 465 0.0003 (1/2980) 0 * Os_TE_552595 Os_TE_552591 Chr2 24481528 24481529 + NDNA1TNA_OS 334 0.0080 (24/2991) 0 * * Os_TE_552583 Chr2 24479867 24479868 + OSMUD1 5028 0.0010 (3/2993) 0 * Os_TE_552582 Os_TE_552582 Chr2 24479859 24479858 - OSMUD1 5028 0.0010 (3/2994) 0 * Os_TE_552583 Os_TE_552581 Chr2 24479702 24479703 - SZ-62LTR 3649 0.0010 (3/2996) 0 * Os_TE_552580 Os_TE_552580 Chr2 24479698 24479697 + SZ-62LTR 3649 0.0010 (3/2996) 0 * Os_TE_552581 Os_TE_552578 Chr2 24479126 24479127 + TYPEU4 402 0.0003 (1/2921) 0 * Os_TE_552577 Os_TE_552577 Chr2 24479118 24479117 - TYPEU1 380 0.0003 (1/2928) 0 * Os_TE_552578 Os_TE_552574 Chr2 24478261 24478260 - RETRO1_LTR 8314 0.0017 (5/2896) 0 * * Os_TE_552566 Chr2 24477437 24477438 + MERMITE18B 1306 0.0145 (43/2969) 0 * Os_TE_552565 Os_TE_552565 Chr2 24477428 24477427 - MERMITE18B 1306 0.0152 (45/2970) 0 * Os_TE_552566 Os_TE_552561 Chr2 24475197 24475196 + ORSgTEMT01602181 239 0.0040 (11/2777) 0 * Os_TE_552560 Os_TE_552560 Chr2 24475194 24475195 - ORSgTEMT01601432 239 0.0024 (7/2920) 0 * Os_TE_552561 Os_TE_552558 Chr2 24474670 24474669 - COPI2_LTR 4733 0.0024 (7/2944) 0 * * Os_TE_552547 Chr2 24469180 24469179 - SC-10_LTR 4920 0.0012 (3/2489) 0 * * Os_TE_552545 Chr2 24468352 24468353 + TNR12 528 0.0078 (21/2703) 0 * Os_TE_552544 Os_TE_552544 Chr2 24468345 24468344 - TNR12 528 0.0077 (21/2715) 0 * Os_TE_552545 Os_TE_552542 Chr2 24467517 24467518 + ORSiTERTOOT00296 5553 0.0064 (16/2482) 0 * * Os_TE_552540 Chr2 24466969 24466970 - OSTONOR1_LTR 6440 0.0064 (15/2337) 0 * Os_TE_552539 Os_TE_552539 Chr2 24466965 24466964 + OSTONOR1_LTR 6440 0.0069 (16/2335) 0 * Os_TE_552540 Os_TE_552538 Chr2 24466682 24466681 + OSR3_LTR 5201 0.0106 (21/1982) 0 * * Os_TE_552536 Chr2 24465596 24465597 - CACTA-J 1159 0.2330 (597/2562) 0 * Os_TE_552535 Os_TE_552535 Chr2 24465595 24465594 + CACTA-L 1162 0.2291 (586/2558) 0 * Os_TE_552536 Os_TE_552534 Chr2 24465391 24465392 + F1275 157 0.0652 (167/2562) 0 * * Os_TE_552531 Chr2 24465312 24465311 + SC-1_LTR 6888 0.0012 (3/2557) 0 * * Os_TE_552529 Chr2 24465098 24465097 - TYPEM 227 0.0098 (20/2042) 0 * * Os_TE_552527 Chr2 24464627 24464628 - CACTA-Q 2268 0.0028 (7/2529) 0 * * Os_TE_552526 Chr2 24464569 24464568 - ORSgTEMT00900760 239 0.0004 (1/2483) 0 * * Os_TE_552524 Chr2 24464396 24464397 - SZ-59_LTR 5600 0.0004 (1/2422) 0 * Os_TE_552523 Os_TE_552523 Chr2 24464392 24464391 + SZ-59_LTR 5600 0.0004 (1/2371) 0 * Os_TE_552524 Os_TE_552522 Chr2 24464255 24464256 + SZLTR 1249 0.0147 (19/1296) 0 * * Os_TE_552520 Chr2 24464194 24464195 + ECR 394 0.5220 (1291/2473) 0 * Os_TE_552519 Os_TE_552519 Chr2 24464188 24464187 + ECR 394 0.4752 (1082/2277) 0 * Os_TE_552520 Os_TE_552518 Chr2 24464026 24464025 + STOWAWAY10_OS 259 0.0052 (13/2506) 0 * * Os_TE_552517 Chr2 24463706 24463707 - ORSgTERT00201216 11284 0.0016 (4/2480) 0 * Os_TE_552516 Os_TE_552516 Chr2 24463702 24463701 - RIRE2_LTR 11306 0.0016 (4/2551) 0 * Os_TE_552517 Os_TE_552515 Chr2 24463673 24463674 + F569 228 0.0004 (1/2288) 0 * Os_TE_552514 Os_TE_552514 Chr2 24463671 24463670 - F569 228 0.0004 (1/2554) 0 * Os_TE_552515 Os_TE_552513 Chr2 24463666 24463667 + COPI2_LTR 4733 0.1123 (287/2555) 0 * Os_TE_552512 Os_TE_552512 Chr2 24463662 24463661 - COPI2_LTR 4733 0.1102 (281/2551) 0 * Os_TE_552513 Os_TE_552511 Chr2 24463156 24463157 - SZ-9LTR 965 0.0154 (39/2536) 0 * * Os_TE_552509 Chr2 24463121 24463120 + CACTA-B 1103 0.0104 (26/2505) 0 * * Os_TE_552507 Chr2 24462293 24462292 - CACTA-Q 2268 0.0012 (3/2573) 0 * * Os_TE_552506 Chr2 24462244 24462243 + ORSgTEMT01701115 144 0.8824 (2266/2568) 0 * * Os_TE_552505 Chr2 24462134 24462135 + ORSgTEMT01701115 144 0.0073 (18/2451) 0 * * Os_TE_552502 Chr2 24461978 24461977 - SZ-9LTR 965 0.0758 (182/2402) 0 * * Os_TE_552499 Chr2 24461835 24461834 - RETROSAT4_LTR 13504 0.0023 (4/1772) 0 * * Os_TE_552496 Chr2 24461470 24461471 - RIRE2_LTR 11306 0.0013 (3/2301) 0 * * Os_TE_552488 Chr2 24461001 24461002 - TREP215 239 0.5961 (1392/2335) 0 * * Os_TE_552486 Chr2 24460634 24460633 - INDITTO 263 0.1958 (453/2314) 0 * * Os_TE_552484 Chr2 24460583 24460584 - RIRE2_LTR 11306 0.0018 (4/2205) 0 * * Os_TE_552483 Chr2 24460539 24460399 - TELIA 141 0.0765 (179/2339) 1 Intact * Os_TE_552482 Chr2 24460393 24460394 + TYPEH 309 0.0005 (1/2188) 0 * * Os_TE_552481 Chr2 24460154 24460155 - CRM-LTR_OS 7749 0.0004 (1/2435) 0 * * Os_TE_552479 Chr2 24460081 24460082 + Cassandra_OS-LTR 764 0.0004 (1/2385) 0 * * Os_TE_552451 Chr2 24439003 24459072 - RETRO1_LTR 8314 0.7176 (155/216) 1 Intact * Os_TE_552444 Chr2 24434228 24434229 - RETRO1_LTR 8314 0.0065 (15/2292) 0 * Os_TE_552443 Os_TE_552443 Chr2 24434224 24434223 + RETRO1_LTR 8314 0.0063 (14/2215) 0 * Os_TE_552444 Os_TE_552435 Chr2 24426459 24417145 + COPIA1-LTR_OS 9292 0.0696 (155/2228) 1 Intact Os_TE_552424 Os_TE_552424 Chr2 24417145 24426459 - COPIA1-LTR_OS 9292 0.0704 (156/2217) 1 Intact Os_TE_552435 Os_TE_552422 Chr2 24416324 24416323 + ORSgTEMT01400032 215 0.7892 (1202/1523) 0 * * Os_TE_552421 Chr2 24416317 24416318 + ORSgTEMT01400024 215 0.8937 (1723/1928) 0 * * Os_TE_552420 Chr2 24416223 24416224 + ORSgTETNOOT00221 261 0.0470 (89/1893) 0 * Os_TE_552419 Os_TE_552419 Chr2 24416221 24416220 - ORSgTETNOOT02417 265 0.0460 (88/1915) 0 * Os_TE_552420 Os_TE_552417 Chr2 24416138 24416137 - TRUNCATOR2_LTR 2904 0.0239 (53/2213) 0 * * Os_TE_552415 Chr2 24415243 24411201 + SZ-43LTR 4039 0.0825 (153/1855) 1 Intact Os_TE_552409 Os_TE_552409 Chr2 24411201 24415243 - SZ-43LTR 4039 0.1055 (156/1479) 1 Intact Os_TE_552415 Os_TE_552400 Chr2 24407107 24407108 - ORSiTERTOOT00333 4719 0.0074 (20/2697) 0 * Os_TE_552399 Os_TE_552399 Chr2 24407104 24407103 + ORSiTERTOOT00333 4719 0.0081 (20/2484) 0 * Os_TE_552400 Os_TE_552396 Chr2 24405617 24405618 + ORSgTETNOOT00908 242 0.0658 (164/2492) 0 * * Os_TE_552395 Chr2 24405239 24404984 + ORSgTETNOOT01998 254 0.0640 (156/2439) 1 Intact Os_TE_552393 Os_TE_552393 Chr2 24404984 24405234 + ORSgTETNOOT01834 251 0.0617 (151/2448) 1 Intact Os_TE_552395 Os_TE_552390 Chr2 24403730 24403731 - ORSgTETN00200001 10994 0.0025 (6/2445) 0 * Os_TE_552389 Os_TE_552389 Chr2 24403728 24403727 + SPMLIKE 10989 0.0037 (9/2454) 0 * Os_TE_552390 Os_TE_552382 Chr2 24395875 24395876 - SC-3_LTR 5748 0.0049 (12/2467) 0 * * Os_TE_552364 Chr2 24389645 24389644 + SZ-48LTR 3632 0.0013 (3/2360) 0 * * Os_TE_552359 Chr2 24388583 24388582 + NDNA1TNA_OS 334 0.0057 (12/2103) 0 * * Os_TE_552357 Chr2 24388553 24388554 - DS-RICE2N 613 0.0018 (4/2265) 0 * Os_TE_552356 Os_TE_552356 Chr2 24388546 24388545 + DS-RICE4N 715 0.0019 (4/2141) 0 * Os_TE_552357 Os_TE_552352 Chr2 24387775 24387774 + CRM-LTR_OS 7749 0.0558 (133/2385) 0 * * Os_TE_552350 Chr2 24387424 24387425 - ORSgTETNOOT00790 253 0.0011 (3/2628) 0 * * Os_TE_552349 Chr2 24387344 24387345 + SZ-67LTR 1540 0.0004 (1/2477) 0 * Os_TE_552348 Os_TE_552348 Chr2 24387340 24387339 - RETROSAT5_LTR 13878 0.0004 (1/2300) 0 * Os_TE_552349 Os_TE_552347 Chr2 24387291 24387292 + ENSPM4_OS 11610 0.0062 (15/2404) 0 * * Os_TE_552341 Chr2 24386731 24386732 + TYPEH 309 0.0008 (2/2646) 0 * * Os_TE_552338 Chr2 24386341 24386594 + ORSgTETNOOT01128 258 0.8626 (2317/2686) 1 Intact * Os_TE_552315 Chr2 24382843 24382844 + YIREN 905 0.0099 (29/2923) 0 * * Os_TE_552313 Chr2 24382053 24382052 + ORSgTEMT00600287 363 0.0141 (42/2969) 0 * * Os_TE_552312 Chr2 24381922 24381923 - CASTAWAY 364 0.0155 (46/2970) 0 * * Os_TE_552311 Chr2 24381597 24381598 + WUWU 113 0.5270 (1553/2947) 0 * * Os_TE_552309 Chr2 24381591 24381592 - ORSgTEMT01601432 239 0.0003 (1/2945) 0 * * Os_TE_552307 Chr2 24381473 24381472 - ORSgTEMT00500675 140 0.0196 (58/2953) 0 * * Os_TE_552301 Chr2 24381245 24381246 - ORSgTEMT00901345 248 0.0012 (3/2418) 0 * * Os_TE_552298 Chr2 24381203 24381202 + AMYLTP 383 0.0092 (26/2818) 0 * * Os_TE_552297 Chr2 24381114 24381115 - INDITTO 263 0.0288 (85/2950) 0 * * Os_TE_552295 Chr2 24380912 24380913 - TYPEM 227 0.0208 (62/2983) 0 * Os_TE_552294 Os_TE_552294 Chr2 24380911 24380910 - ORSgTEMT02400179 221 0.0195 (58/2978) 0 * Os_TE_552295 Os_TE_552290 Chr2 24380589 24380590 + MDR2 6967 0.0061 (18/2947) 0 * Os_TE_552289 Os_TE_552289 Chr2 24380580 24380579 + MDR2 6967 0.0057 (15/2615) 0 * Os_TE_552290 Os_TE_552288 Chr2 24380551 24380552 - MuDR3_OS 8604 0.0027 (8/2940) 0 * Os_TE_552287 Os_TE_552287 Chr2 24380543 24380542 - MuDR3_OS 8604 0.0011 (3/2708) 0 * Os_TE_552288 Os_TE_552286 Chr2 24380536 24380537 + RIRE2_LTR 11306 0.0007 (2/2866) 0 * Os_TE_552285 Os_TE_552285 Chr2 24380532 24380531 - RIRE2_LTR 11306 0.0007 (2/2936) 0 * Os_TE_552286 Os_TE_552281 Chr2 24380441 24380440 + ORSgTEMT00300044 390 0.0211 (57/2703) 0 * * Os_TE_552280 Chr2 24380402 24380403 + MERMITEA 1710 0.0043 (5/1153) 0 * * Os_TE_552273 Chr2 24379026 24379027 - ENSPM4_OS 11610 0.0203 (60/2959) 0 * * Os_TE_552272 Chr2 24378814 24378815 - COWARD 200 0.0010 (3/2991) 0 * * Os_TE_552271 Chr2 24378787 24378788 + SPMLIKE 10989 0.0003 (1/2981) 0 * * Os_TE_552269 Chr2 24378764 24378765 - COPIA2-LTR_OS 6433 0.0007 (2/2936) 0 * Os_TE_552268 Os_TE_552268 Chr2 24378760 24378759 + COPIA2-LTR_OS 6433 0.0003 (1/2986) 0 * Os_TE_552269 Os_TE_552264 Chr2 24378494 24378493 + ENSPM4_OS 11610 0.0007 (2/2940) 0 * Os_TE_552263 Os_TE_552263 Chr2 24378490 24378491 - ENSPM4_OS 11610 0.0007 (2/2967) 0 * Os_TE_552264 Os_TE_552261 Chr2 24378391 24378392 - ORSgTEMT00101174 225 0.7131 (860/1206) 0 * * Os_TE_552259 Chr2 24378349 24378348 - ORSgTEMT02900061 318 0.0008 (1/1326) 0 * Os_TE_552258 Os_TE_552258 Chr2 24378348 24378349 - STOWAWAY12_OS 312 0.0003 (1/2971) 0 * Os_TE_552259 Os_TE_552255 Chr2 24378253 24378254 - RIRE2_LTR 11306 0.0031 (9/2939) -1 * * Os_TE_552250 Chr2 24378081 24378082 + Mudr5_OS 5952 0.0081 (22/2708) 0 * Os_TE_552249 Os_TE_552249 Chr2 24378079 24378078 + Mudr5_OS 5952 0.0085 (22/2601) 0 * Os_TE_552250 Os_TE_552247 Chr2 24377861 24377862 - ORSgTEMT01601208 238 0.0089 (24/2704) 0 * * Os_TE_552241 Chr2 24377511 24377512 - OSTONOR1_LTR 6440 0.0157 (39/2478) 0 * * Os_TE_552234 Chr2 24375696 24375697 + RIREX_LTR 8828 0.1307 (121/926) 0 * * Os_TE_552193 Chr2 24358563 24358562 + RIREX_LTR 8828 0.0007 (2/2708) 0 * * Os_TE_552182 Chr2 24350366 24350367 - ORSgTEMT00501153 148 0.0759 (123/1621) 0 * * Os_TE_552161 Chr2 24348997 24348998 + ORSiTEMT00100001 540 0.0041 (5/1231) 0 * * Os_TE_552160 Chr2 24348542 24348543 - ORSgTEMT00500081 146 0.0046 (7/1519) 0 * * Os_TE_552156 Chr2 24348129 24348130 + RIRE2_LTR 11306 0.0026 (4/1546) 0 * Os_TE_552155 Os_TE_552155 Chr2 24348125 24348124 - RIRE2_LTR 11306 0.0024 (4/1653) 0 * Os_TE_552156 Os_TE_552154 Chr2 24348123 24348124 - RETROSAT4_LTR 13504 0.0117 (18/1539) 0 * Os_TE_552153 Os_TE_552153 Chr2 24348119 24348118 + RETROSAT4_LTR 13504 0.0103 (16/1554) 0 * Os_TE_552154 Os_TE_552147 Chr2 24347744 24347998 - STOWAWAY8_OS 259 0.7921 (1109/1400) 1 Intact Os_TE_552146 Os_TE_552146 Chr2 24347700 24347449 - ORSgTEMT01500002 239 0.8275 (1103/1333) 1 Intact Os_TE_552147 Os_TE_552124 Chr2 24344809 24344808 - F524 291 0.0008 (1/1230) 0 * * Os_TE_552116 Chr2 24344355 24344702 - ORSgTEMT00100133 346 0.6326 (761/1203) 1 Intact * Os_TE_552114 Chr2 24344227 24344226 - RPO_OS 1983 0.0007 (1/1519) 0 * * Os_TE_552113 Chr2 24344153 24344154 - ORSgTEMT00300008 396 0.2242 (324/1445) 0 * * Os_TE_552110 Chr2 24343709 24343708 - ORSgTEMT01701858 154 0.2847 (447/1570) 0 * Os_TE_552109 Os_TE_552109 Chr2 24343706 24343707 + ORSgTEMT01700513 151 0.2727 (421/1544) 0 * Os_TE_552110 Os_TE_552106 Chr2 24343618 24343617 - RIREX_LTR 8828 0.0006 (1/1642) 0 * * Os_TE_552097 Chr2 24342643 24342642 - MERMITE18E 1528 0.0010 (2/1962) 0 * * Os_TE_552093 Chr2 24341727 24341728 + OSTONOR1_LTR 6440 0.0023 (6/2587) 0 * Os_TE_552092 Os_TE_552092 Chr2 24341723 24341722 - OSTONOR1_LTR 6440 0.0027 (7/2569) 0 * Os_TE_552093 Os_TE_552088 Chr2 24341106 24341107 - MuDR3_OS 8604 0.0508 (32/630) 0 * * Os_TE_552087 Chr2 24341016 24333273 + MERMITEB 1610 0.6166 (386/626) 1 Intact Os_TE_552076 Os_TE_552076 Chr2 24333271 24341016 + MERMITEB 1610 0.6164 (368/597) 1 Intact Os_TE_552087 Os_TE_552071 Chr2 24331378 24331377 + NDNA1TNA_OS 334 0.0616 (39/633) 0 * * Os_TE_552062 Chr2 24329170 24329171 - INDITTO 263 0.0037 (5/1359) 0 * Os_TE_552061 Os_TE_552061 Chr2 24329168 24329167 + INDITTO 263 0.0021 (4/1909) 0 * Os_TE_552062 Os_TE_552059 Chr2 24328995 24328994 - TRUNCATOR2_LTR 2904 0.0018 (3/1653) 0 * * Os_TE_552058 Chr2 24328992 24328993 - RETROSAT4_LTR 13504 0.0081 (13/1607) 0 * * Os_TE_552055 Chr2 24328362 24328363 - RIRE2_LTR 11306 0.0007 (1/1453) 0 * Os_TE_552054 Os_TE_552054 Chr2 24328358 24328357 - ORSgTERT00201216 11284 0.0007 (1/1474) 0 * Os_TE_552055 Os_TE_552053 Chr2 24328265 24328266 - SZ-58LTR 114 0.2375 (336/1415) 0 * Os_TE_552052 Os_TE_552052 Chr2 24328261 24328260 + SZ-58LTR 114 0.2384 (319/1338) 0 * Os_TE_552053 Os_TE_552051 Chr2 24328167 24328168 + COPIA2-LTR_OS 6433 0.0007 (1/1500) 0 * * Os_TE_552047 Chr2 24327599 24327451 - ORSgTEMT01701882 154 0.3320 (422/1271) 1 Intact Os_TE_552044 Os_TE_552044 Chr2 24327458 24327599 + ORSgTEMT01701265 147 0.3459 (422/1220) 1 Intact Os_TE_552047 Os_TE_552030 Chr2 24324062 24324063 - RIREX_LTR 8828 0.0004 (1/2384) 0 * Os_TE_552029 Os_TE_552029 Chr2 24324058 24324057 + RIREX_LTR 8828 0.0006 (1/1782) 0 * Os_TE_552030 Os_TE_552026 Chr2 24323676 24323677 - ORSgTEMT01601208 238 0.0129 (17/1322) 0 * * Os_TE_552022 Chr2 24323237 24323238 + MERMITEB 1610 0.1155 (165/1429) 0 * * Os_TE_552018 Chr2 24323128 24323127 - SZ-48LTR 3632 0.0066 (9/1362) 0 * * Os_TE_552015 Chr2 24322711 24322712 + ORSgTEMT00500885 144 0.7388 (970/1313) 0 * Os_TE_552014 Os_TE_552014 Chr2 24322708 24322707 - ORSgTEMT00500321 149 0.8186 (1223/1494) 0 * Os_TE_552015 Os_TE_552011 Chr2 24322128 24322129 + ORSiTERTOOT00028 8600 0.0033 (5/1497) 0 * Os_TE_552010 Os_TE_552010 Chr2 24322124 24322123 - TRUNCATOR2_LTR 2904 0.0060 (9/1508) 0 * Os_TE_552011 Os_TE_552009 Chr2 24321784 24321785 - SZ-35LTR 3853 0.0013 (2/1496) 0 * Os_TE_552008 Os_TE_552008 Chr2 24321780 24321779 + RETROSAT4_LTR 13504 0.0011 (2/1830) 0 * Os_TE_552009 Os_TE_552004 Chr2 24319504 24319503 - RETROSAT2LTR 12796 0.0066 (14/2115) 0 * * Os_TE_551996 Chr2 24316694 24316693 - SZ-48LTR 3632 0.0014 (3/2073) 0 * * Os_TE_551994 Chr2 24316638 24316637 - INDITTO 263 0.0925 (89/962) 0 * * Os_TE_551993 Chr2 24316535 24316534 - TRUNCATOR 2918 0.0106 (8/753) 0 * * Os_TE_551991 Chr2 24316027 24316028 - AMYLTP 383 0.1496 (143/956) 0 * * Os_TE_551989 Chr2 24315833 24315832 + TYPEU4 402 0.0005 (1/2134) 0 * * Os_TE_551987 Chr2 24315708 24315707 - RIREX_LTR 8828 0.0031 (3/960) 0 * * Os_TE_551985 Chr2 24315356 24315357 + TESSBIG 4057 0.0064 (6/932) 0 * Os_TE_551984 Os_TE_551984 Chr2 24315349 24315348 - TESSBIG 4057 0.0066 (5/761) 0 * Os_TE_551985 Os_TE_551983 Chr2 24315196 24315195 + RETROSAT4_LTR 13504 0.0011 (1/950) 0 * * Os_TE_551959 Chr2 24294209 24294210 - MuDR4_OS 7610 0.0123 (11/897) 0 * * Os_TE_551954 Chr2 24292605 24292606 - OSLINE1-4 4779 0.2037 (416/2042) 0 * * Os_TE_551950 Chr2 24292354 24292355 - COPIA1-LTR_OS 9292 0.0650 (156/2399) 0 * Os_TE_551949 Os_TE_551949 Chr2 24292352 24292351 + SZ-5LTR 1223 0.0549 (149/2714) 0 * Os_TE_551950 Os_TE_551947 Chr2 24292303 24292304 + ORSiTETNOOT00107 906 0.0026 (7/2733) 0 * Os_TE_551946 Os_TE_551946 Chr2 24292300 24292299 - ORSiTERT00100062 5674 0.0079 (21/2659) 0 * Os_TE_551947 Os_TE_551937 Chr2 24291458 24291457 - CLOUD-7 495 0.0017 (4/2374) 0 * * Os_TE_551936 Chr2 24291451 24291450 + RIREX_LTR 8828 0.0679 (161/2370) 0 * * Os_TE_551929 Chr2 24291173 24291174 - SZ-48LTR 3632 0.0009 (2/2177) 0 * * Os_TE_551916 Chr2 24289372 24289371 + OSTE33 1012 0.0047 (14/2982) 0 * * Os_TE_551915 Chr2 24289217 24289216 - TNR2A 152 0.0003 (1/2984) 0 * * Os_TE_551913 Chr2 24289065 24289066 - ORSgTEMT00900099 250 0.0108 (32/2966) 0 * * Os_TE_551912 Chr2 24289032 24289031 - ORSgTEMT01601208 238 0.0020 (6/2950) 0 * Os_TE_551911 Os_TE_551911 Chr2 24289029 24289030 + ORSgTEMT01601488 239 0.0019 (5/2673) 0 * Os_TE_551912 Os_TE_551909 Chr2 24288918 24288917 - F770 284 0.0010 (3/2966) 0 * * Os_TE_551907 Chr2 24288822 24288823 + MERMITE18B 1306 0.0032 (9/2834) 0 * * Os_TE_551902 Chr2 24288711 24288710 + NDNA1TNA_OS 334 0.0004 (1/2813) 0 * * Os_TE_551901 Chr2 24288694 24288693 - ORSgTEMT01601770 238 0.0607 (171/2816) 0 * * Os_TE_551894 Chr2 24287494 24287495 + ORSiCMCM00100019 2717 0.0291 (72/2474) 0 * Os_TE_551893 Os_TE_551893 Chr2 24287490 24287489 - TRUNCATOR2_LTR 2904 0.0248 (73/2949) 0 * Os_TE_551894 Os_TE_551892 Chr2 24287482 24287481 - STOWAWAY50_OS 174 0.0031 (9/2904) 0 * * Os_TE_551890 Chr2 24287394 24287393 + MuDR4_OS 7610 0.0734 (154/2099) 0 * * Os_TE_551887 Chr2 24287330 24287331 - MUDRN1_OS 764 0.0388 (110/2832) 0 * * Os_TE_551886 Chr2 24287324 24287325 + MERMITEA 1710 0.0473 (140/2959) 0 * * Os_TE_551885 Chr2 24287209 24287208 - ORSgTEMT00500205 140 0.0488 (136/2787) 0 * * Os_TE_551882 Chr2 24287111 24287112 - INDITTO 263 0.0047 (14/2988) 0 * Os_TE_551881 Os_TE_551881 Chr2 24287109 24287108 + INDITTO 263 0.0047 (14/2965) 0 * Os_TE_551882 Os_TE_551880 Chr2 24287057 24287056 + ORSgTEMT00901844 250 0.0069 (20/2916) 0 * * Os_TE_551879 Chr2 24287053 24287054 + ORSgTEMT00901844 250 0.0017 (5/2997) 0 * * Os_TE_551878 Chr2 24286850 24286849 - ORSgTEMT01602292 239 0.0111 (32/2877) 0 * * Os_TE_551873 Chr2 24286529 24286530 - ORSgTEMT01601493 303 0.0103 (30/2919) 0 * * Os_TE_551872 Chr2 24286428 24286427 - ORSgTEMT01701488 202 0.0007 (2/2944) 0 * * Os_TE_551867 Chr2 24285802 24285801 - ORSgTEMT02900061 318 0.0787 (224/2847) 0 * Os_TE_551866 Os_TE_551866 Chr2 24285794 24285795 - STOWAWAY13_OS 251 0.0732 (218/2977) 0 * Os_TE_551867 Os_TE_551865 Chr2 24285410 24285411 - RETRO1_LTR 8314 0.0035 (10/2888) 0 * * Os_TE_551864 Chr2 24285391 24285392 - ORSiTERTOOT00348 13055 0.0003 (1/2977) 0 * Os_TE_551863 Os_TE_551863 Chr2 24285387 24285386 + ORSiTERTOOT00348 13055 0.0004 (1/2831) 0 * Os_TE_551864 Os_TE_551858 Chr2 24282743 24282744 - COPI2_LTR 4733 0.0022 (6/2764) 0 * * Os_TE_551855 Chr2 24282427 24282426 + ORSgTEMT01700715 134 0.4085 (1210/2962) 0 * * Os_TE_551854 Chr2 24282400 24282401 - NDNA1TNA_OS 334 0.0003 (1/2957) 0 * * Os_TE_551851 Chr2 24282092 24282307 + STOWAWAY18_OS 216 0.3616 (1075/2973) 1 Intact * Os_TE_551850 Chr2 24282033 24282032 - ORSgTEMT01400022 212 0.0165 (49/2973) 0 * Os_TE_551849 Os_TE_551849 Chr2 24282030 24282031 - STOWAWAY9_OS 235 0.0177 (53/2988) 0 * Os_TE_551850 Os_TE_551847 Chr2 24281415 24281414 - MPING 430 0.0003 (1/2930) 0 * * Os_TE_551844 Chr2 24281387 24281388 + STOWAWAY51_OS 246 0.0122 (36/2958) 0 * * Os_TE_551843 Chr2 24281258 24281257 + ORSgTETNOOT00908 242 0.0150 (44/2927) 0 * * Os_TE_551842 Chr2 24281217 24281218 - DS-RICE2N 613 0.0045 (11/2426) 0 * Os_TE_551841 Os_TE_551841 Chr2 24281210 24281209 + DS-RICE4N 715 0.0041 (12/2941) 0 * Os_TE_551842 Os_TE_551839 Chr2 24281116 24281117 - ORSgTEMT01702186 155 0.2665 (789/2961) 0 * * Os_TE_551837 Chr2 24277691 24277555 + ORSgTEMT01702045 137 0.5865 (1637/2791) 1 Intact Os_TE_551836 Os_TE_551836 Chr2 24277555 24277691 - ORSgTEMT01702045 137 0.6871 (1649/2400) 1 Intact Os_TE_551837 Os_TE_551833 Chr2 24276230 24276231 + OSTONOR1_LTR 6440 0.0003 (1/2993) 0 * Os_TE_551832 Os_TE_551832 Chr2 24276226 24276225 - ORSiTERT00100062 5674 0.0003 (1/2994) 0 * Os_TE_551833 Os_TE_551831 Chr2 24275736 24275737 + RIREX_LTR 8828 0.0010 (3/2997) 0 * Os_TE_551830 Os_TE_551830 Chr2 24275732 24275731 - RIREX_LTR 8828 0.0010 (3/2997) 0 * Os_TE_551831 Os_TE_551829 Chr2 24275724 24275725 - LINE-4_OS 3662 0.0050 (15/2995) 0 * * Os_TE_551828 Chr2 24275272 24275273 + ORSgTETNOOT00908 242 0.0007 (2/2978) 0 * Os_TE_551827 Os_TE_551827 Chr2 24275270 24275269 - ORSgTETNOOT00908 242 0.0007 (2/2994) 0 * Os_TE_551828 Os_TE_551826 Chr2 24275262 24275263 + STOWAWAY51_OS 246 0.0134 (40/2996) 0 * * Os_TE_551825 Chr2 24274868 24274869 - LINE-4_OS 3662 0.0010 (3/2967) 0 * * Os_TE_551824 Chr2 24274808 24274809 + TRUNCATOR 2918 0.0246 (73/2968) 0 * Os_TE_551823 Os_TE_551823 Chr2 24274802 24274801 - ORSiTERT00200154 9386 0.0253 (75/2967) 0 * Os_TE_551824 Os_TE_551808 Chr2 24273784 24273785 - ORSiTETNOOT00200 3563 0.0097 (29/2979) 0 * Os_TE_551807 Os_TE_551807 Chr2 24273777 24273776 + TWIFBIG 3567 0.0081 (24/2971) 0 * Os_TE_551808 Os_TE_551805 Chr2 24273729 24273728 + TWIFB1 3737 0.0003 (1/2980) 0 * * Os_TE_551802 Chr2 24273689 24273690 - ORSiTETNOOT00216 3569 0.0104 (31/2994) 0 * Os_TE_551801 Os_TE_551801 Chr2 24273682 24273681 + TWIFBIG 3567 0.0067 (20/2984) 0 * Os_TE_551802 Os_TE_551798 Chr2 24271712 24271713 - SC-8_LTR 4951 0.0013 (4/2989) 0 * Os_TE_551797 Os_TE_551797 Chr2 24271708 24271707 + SC-8_LTR 4951 0.0013 (4/2986) 0 * Os_TE_551798 Os_TE_551793 Chr2 24270208 24270207 + SINE9_OS 293 0.0007 (2/2992) 0 * * Os_TE_551787 Chr2 24267876 24267877 + RIREX_LTR 8828 0.0003 (1/2987) 0 * * Os_TE_551784 Chr2 24267671 24267670 - CACTA-Q 2268 0.0060 (18/2996) 0 * * Os_TE_551783 Chr2 24267563 24267564 - RETROSAT4_LTR 13504 0.0003 (1/2998) 0 * * Os_TE_551781 Chr2 24266805 24266806 - RETRO2_LTR 12874 0.0010 (3/2934) 0 * Os_TE_551780 Os_TE_551780 Chr2 24266801 24266800 + ORSgTERTOOT00009 12852 0.0010 (3/2931) 0 * Os_TE_551781 Os_TE_551778 Chr2 24266218 24266217 + ORSgTETNOOT00908 242 0.0117 (35/2993) 0 * Os_TE_551777 Os_TE_551777 Chr2 24266217 24266218 + ORSgTETNOOT01219 231 0.0124 (37/2993) 0 * Os_TE_551778 Os_TE_551771 Chr2 24261252 24261253 - TYPEM 227 0.0013 (4/2983) 0 * Os_TE_551770 Os_TE_551770 Chr2 24261251 24261250 - ORSgTEMT02400179 221 0.0015 (4/2692) 0 * Os_TE_551771 Os_TE_551769 Chr2 24260934 24260935 + OSR3_LTR 5201 0.0003 (1/2974) 0 * Os_TE_551768 Os_TE_551768 Chr2 24260930 24260929 - OSR3_LTR 5201 0.0003 (1/2977) 0 * Os_TE_551769 Os_TE_551767 Chr2 24260750 24260749 + ORSgTEMT01602181 239 0.0104 (31/2986) 0 * Os_TE_551766 Os_TE_551766 Chr2 24260747 24260748 - ORSgTEMT01601432 239 0.0100 (30/2991) 0 * Os_TE_551767 Os_TE_551765 Chr2 24260671 24260672 + RIREX_LTR 8828 0.0003 (1/2985) 0 * Os_TE_551764 Os_TE_551764 Chr2 24260667 24260666 - RIREX_LTR 8828 0.0003 (1/2988) 0 * Os_TE_551765 Os_TE_551763 Chr2 24260349 24260350 + INDITTO 263 0.0003 (1/2978) 0 * Os_TE_551762 Os_TE_551762 Chr2 24260347 24260346 - INDITTO 263 0.0003 (1/2995) 0 * Os_TE_551763 Os_TE_551761 Chr2 24260334 24260335 - RIREX_LTR 8828 0.0100 (30/2991) 0 * Os_TE_551760 Os_TE_551760 Chr2 24260330 24260329 - RIREX_LTR 8828 0.0107 (32/2987) 0 * Os_TE_551761 Os_TE_551759 Chr2 24260292 24260293 - MPING 430 0.0007 (2/2988) 0 * Os_TE_551758 Os_TE_551758 Chr2 24260290 24260289 + MPING 430 0.0007 (2/2989) 0 * Os_TE_551759 Os_TE_551738 Chr2 24252594 24252593 + TRUNCATOR 2918 0.0125 (35/2795) 0 * Os_TE_551737 Os_TE_551737 Chr2 24252593 24252594 - TRUNCATOR 2918 0.0113 (32/2840) 0 * Os_TE_551738 Os_TE_551735 Chr2 24252116 24252117 - HARB-1_OS 5166 0.0047 (14/2988) 0 * Os_TE_551734 Os_TE_551734 Chr2 24252114 24252113 + HARB-1_OS 5166 0.0047 (14/2985) 0 * Os_TE_551735 Os_TE_551733 Chr2 24251887 24251888 - ORSiTERTOOT00332 5395 0.0003 (1/2996) 0 * Os_TE_551732 Os_TE_551732 Chr2 24251883 24251882 + ORSiTERTOOT00332 5395 0.0003 (1/2994) 0 * Os_TE_551733 Os_TE_551731 Chr2 24251584 24251585 + SC-1_LTR 6888 0.0053 (16/2996) 0 * * Os_TE_551726 Chr2 24250896 24250897 + ORSgTEMT00300064 397 0.0130 (36/2761) 0 * * Os_TE_551725 Chr2 24250770 24250769 - ORSgTEMT01601432 239 0.1788 (510/2853) 0 * * Os_TE_551720 Chr2 24249814 24249815 - RIRE2_LTR 11306 0.0003 (1/2917) 0 * * Os_TE_551715 Chr2 24249650 24249651 - ORSgTETN00200001 10994 0.0111 (33/2970) 0 * Os_TE_551714 Os_TE_551714 Chr2 24249648 24249647 + SPMLIKE 10989 0.0120 (36/2994) 0 * Os_TE_551715 Os_TE_551703 Chr2 24248151 24248150 + HELITRON2_OS 15167 0.0285 (85/2986) 0 * * Os_TE_551674 Chr2 24241931 24241545 + AMYLTP 383 0.5329 (1555/2918) 1 Intact * Os_TE_551670 Chr2 24241473 24241474 + TNR2A 152 0.0017 (5/2987) 0 * Os_TE_551669 Os_TE_551669 Chr2 24241457 24241456 + TNR2A 152 0.0017 (5/2987) 0 * Os_TE_551670 Os_TE_551645 Chr2 24232760 24232761 - TEMPINDAS 4259 0.0004 (1/2724) 0 * * Os_TE_551643 Chr2 24232677 24232678 - MuDR3_OS 8604 0.2900 (852/2938) 0 * Os_TE_551642 Os_TE_551642 Chr2 24232668 24232667 - MuDR3_OS 8604 0.2362 (631/2672) 0 * Os_TE_551643 Os_TE_551641 Chr2 24232502 24232503 - RIRE2_LTR 11306 0.0090 (27/2994) 0 * Os_TE_551640 Os_TE_551640 Chr2 24232498 24232497 - ORSgTERT00201216 11284 0.0084 (25/2994) 0 * Os_TE_551641 Os_TE_551624 Chr2 24229052 24229051 - STOWAWAY9_OS 235 0.0007 (2/2988) 0 * * Os_TE_551623 Chr2 24229049 24229050 - ORSgTEMT01400011 212 0.0017 (5/2994) 0 * * Os_TE_551621 Chr2 24227572 24227571 - NDNA2TNA_OS 346 0.0221 (66/2981) 0 * * Os_TE_551619 Chr2 24227014 24227013 - NDNA1TNA_OS 334 0.0017 (5/2986) 0 * * Os_TE_551618 Chr2 24225807 24225806 + STOWAWAY44_OS 240 0.0033 (10/2997) 0 * Os_TE_551617 Os_TE_551617 Chr2 24225804 24225805 - STOWAWAY51_OS 246 0.0033 (10/2998) 0 * Os_TE_551618 Os_TE_551616 Chr2 24225569 24225570 + ORSgTETNOOT01219 231 0.0017 (5/2994) 0 * Os_TE_551615 Os_TE_551615 Chr2 24225561 24225560 + ORSgTETNOOT00908 242 0.0017 (5/2993) 0 * Os_TE_551616 Os_TE_551613 Chr2 24225326 24225327 + OLO24 345 0.0003 (1/2991) 0 * Os_TE_551612 Os_TE_551612 Chr2 24225324 24225323 - OLO24 345 0.0007 (2/2989) 0 * Os_TE_551613 Os_TE_551608 Chr2 24223302 24223303 + TWIF 586 0.0004 (1/2857) 0 * Os_TE_551607 Os_TE_551607 Chr2 24223295 24223294 - ORSiTETNOOT00134 607 0.0003 (1/2916) 0 * Os_TE_551608 Os_TE_551605 Chr2 24223164 24223165 - INDITTO 263 0.0014 (4/2799) 0 * * Os_TE_551593 Chr2 24221849 24221850 - RETRO1_LTR 8314 0.0047 (14/2972) 0 * Os_TE_551592 Os_TE_551592 Chr2 24221845 24221844 + RETRO2A_LTR 12895 0.0047 (14/2971) 0 * Os_TE_551593 Os_TE_551591 Chr2 24221803 24221804 - RIREX_LTR 8828 0.0003 (1/2963) 0 * Os_TE_551590 Os_TE_551590 Chr2 24221799 24221798 + RIREX_LTR 8828 0.0003 (1/2966) 0 * Os_TE_551591 Os_TE_551588 Chr2 24221210 24221209 + MPING 430 0.0013 (4/2997) 0 * * Os_TE_551580 Chr2 24220397 24220398 - RETROSAT2LTR 12796 0.0160 (48/2991) 0 * Os_TE_551579 Os_TE_551579 Chr2 24220395 24220394 + RETROSAT2LTR 12796 0.0157 (47/2990) 0 * Os_TE_551580 Os_TE_551577 Chr2 24220354 24220355 + STOWAWAY51_OS 246 0.0007 (2/2993) 0 * * Os_TE_551573 Chr2 24219970 24219971 + SEVERIN-2 1952 0.0058 (16/2742) 0 * * Os_TE_551564 Chr2 24219281 24219280 + SZ-40LTR 2465 0.0017 (5/2981) 0 * * Os_TE_551563 Chr2 24219261 24219262 - SZ-35LTR 3853 0.0427 (128/2996) 0 * Os_TE_551562 Os_TE_551562 Chr2 24219257 24219256 + RETROSAT4_LTR 13504 0.0413 (123/2979) 0 * Os_TE_551563 Os_TE_551560 Chr2 24219071 24219070 + TRUNCATOR 2918 0.0037 (11/2986) 0 * Os_TE_551559 Os_TE_551559 Chr2 24219070 24219071 - TRUNCATOR 2918 0.0040 (12/2991) 0 * Os_TE_551560 Os_TE_551531 Chr2 24208011 24208012 - COPIA2-LTR_OS 6433 0.0010 (3/2994) 0 * Os_TE_551530 Os_TE_551530 Chr2 24208007 24208006 + COPIA2-LTR_OS 6433 0.0010 (3/2996) 0 * Os_TE_551531 Os_TE_551529 Chr2 24207779 24207780 + INDITTO 263 0.0030 (9/2992) 0 * Os_TE_551528 Os_TE_551528 Chr2 24207777 24207776 - INDITTO 263 0.0030 (9/2988) 0 * Os_TE_551529 Os_TE_551518 Chr2 24204745 24204744 + STOWAWAY44_OS 240 0.0064 (19/2986) 0 * Os_TE_551517 Os_TE_551517 Chr2 24204742 24204743 + STOWAWAY44_OS 240 0.0070 (21/2998) 0 * Os_TE_551518 Os_TE_551503 Chr2 24202669 24202670 + ORSgTERTOOT00009 12852 0.0010 (3/2955) 0 * * Os_TE_551499 Chr2 24201293 24201294 + ORSgTEMT01601591 242 0.0003 (1/2994) 0 * * Os_TE_551498 Chr2 24200688 24200687 - ORSgTEMT00900741 219 0.0003 (1/2993) 0 * * Os_TE_551489 Chr2 24196136 24196137 - INDITTO 263 0.0074 (22/2964) 0 * * Os_TE_551483 Chr2 24193234 24190152 - RETROSAT2LTRA 3112 0.5996 (1791/2987) 1 Intact * Os_TE_551476 Chr2 24189468 24189469 - RETRO2A_LTR 12895 0.0174 (52/2982) 0 * Os_TE_551475 Os_TE_551475 Chr2 24189464 24189463 + RETRO1_LTR 8314 0.0182 (54/2974) 0 * Os_TE_551476 Os_TE_551459 Chr2 24178250 24178251 - F569 228 0.0141 (42/2987) 0 * Os_TE_551458 Os_TE_551458 Chr2 24178248 24178247 + F569 228 0.0134 (40/2988) 0 * Os_TE_551459 Os_TE_551457 Chr2 24177905 24177906 - ORSgTEMT02400179 221 0.0201 (60/2986) 0 * Os_TE_551456 Os_TE_551456 Chr2 24177904 24177903 - TYPEM 227 0.0197 (59/2993) 0 * Os_TE_551457 Os_TE_551455 Chr2 24177372 24177371 + STOWAWAY51_OS 246 0.0227 (47/2071) 0 * * Os_TE_551450 Chr2 24175226 24175227 - RIRE2_LTR 11306 0.0129 (36/2788) 0 * * Os_TE_551448 Chr2 24174976 24174977 - ORSgTEMT01600639 228 0.4871 (1381/2835) 0 * Os_TE_551447 Os_TE_551447 Chr2 24174975 24174974 - ORSgTEMT01600639 228 0.4800 (1344/2800) 0 * Os_TE_551448 Os_TE_551442 Chr2 24168520 24168519 + ORSgTEMT00100291 345 0.0003 (1/2975) 0 * * Os_TE_551427 Chr2 24163222 24163221 - FOCUS 257 0.0007 (2/2978) 0 * * Os_TE_551425 Chr2 24163173 24163174 - ORSiTERTOOT00329 5144 0.0140 (42/2995) 0 * Os_TE_551424 Os_TE_551424 Chr2 24163166 24163165 + ORSiTERTOOT00329 5144 0.0134 (40/2994) 0 * Os_TE_551425 Os_TE_551409 Chr2 24156107 24156108 - TYPEU 362 0.0017 (5/2994) 0 * * Os_TE_551408 Chr2 24156033 24156034 - RETROSAT2LTR 12796 0.0017 (5/2995) 0 * Os_TE_551407 Os_TE_551407 Chr2 24156031 24156030 + RETROSAT2LTR 12796 0.0017 (5/2994) 0 * Os_TE_551408 Os_TE_551406 Chr2 24155978 24155979 + COPIA2-LTR_OS 6433 0.0023 (7/2996) 0 * Os_TE_551405 Os_TE_551405 Chr2 24155974 24155973 - COPIA2-LTR_OS 6433 0.0023 (7/2995) 0 * Os_TE_551406 Os_TE_551399 Chr2 24153905 24153906 - ENSPM6_OS 9815 0.0029 (8/2807) 0 * * Os_TE_551348 Chr2 24142175 24142176 + SC-8_LTR 4951 0.0003 (1/2977) 0 * Os_TE_551347 Os_TE_551347 Chr2 24142171 24142170 - SC-8_LTR 4951 0.0003 (1/2974) 0 * Os_TE_551348 Os_TE_551326 Chr2 24133547 24133546 + STOWAWAY51_OS 246 0.0003 (1/2997) 0 * Os_TE_551325 Os_TE_551325 Chr2 24133541 24133542 - STOWAWAY51_OS 246 0.0003 (1/2998) 0 * Os_TE_551326 Os_TE_551324 Chr2 24133329 24133328 + ORSgTEMT00500852 140 0.0017 (5/2997) 0 * Os_TE_551323 Os_TE_551323 Chr2 24133325 24133326 - ORSgTEMT00501356 145 0.0010 (3/2997) 0 * Os_TE_551324 Os_TE_551322 Chr2 24133220 24133221 + COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_551321 Os_TE_551321 Chr2 24133216 24133215 - COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_551322 Os_TE_551319 Chr2 24133018 24133019 - MuDR4_OS 7610 0.0178 (53/2983) 0 * Os_TE_551318 Os_TE_551318 Chr2 24133009 24133008 - MuDR4_OS 7610 0.0184 (55/2986) 0 * Os_TE_551319 Os_TE_551312 Chr2 24131469 24131468 + RIREX_LTR 8828 0.0007 (2/2991) 0 * * Os_TE_551310 Chr2 24130119 24130120 + RETRO2A_LTR 12895 0.0206 (58/2809) 0 * Os_TE_551309 Os_TE_551309 Chr2 24130115 24130114 - RETRO1_LTR 8314 0.0207 (58/2805) 0 * Os_TE_551310 Os_TE_551305 Chr2 24129620 24129619 + AMYLTP 383 0.1838 (511/2780) 0 * * Os_TE_551300 Chr2 24125811 24125810 - INDITTO 263 0.0044 (13/2939) 0 * * Os_TE_551290 Chr2 24125222 24125223 - NDNA1TNA_OS 334 0.0007 (2/2987) 0 * Os_TE_551289 Os_TE_551289 Chr2 24125220 24125219 + NDNA1TNA_OS 334 0.0007 (2/2992) 0 * Os_TE_551290 Os_TE_551281 Chr2 24122848 24122849 - RETRO1_LTR 8314 0.0003 (1/2990) 0 * Os_TE_551280 Os_TE_551280 Chr2 24122844 24122843 + RETRO1_LTR 8314 0.0007 (2/2985) 0 * Os_TE_551281 Os_TE_551256 Chr2 24117900 24117901 + MUDRN2_OS 756 0.0207 (61/2943) 0 * Os_TE_551255 Os_TE_551255 Chr2 24117892 24117891 - MUDRN3_OS 903 0.0221 (65/2946) 0 * Os_TE_551256 Os_TE_551200 Chr2 24098028 24098027 - F118 179 0.0017 (5/2998) 0 * Os_TE_551199 Os_TE_551199 Chr2 24098023 24098024 + F118 179 0.0017 (5/2996) 0 * Os_TE_551200 Os_TE_551194 Chr2 24095278 24095279 - CASTAWAY 364 0.0007 (2/2994) 0 * * Os_TE_551192 Chr2 24094876 24094875 + ORSgTETNOOT01668 244 0.0003 (1/2988) 0 * * Os_TE_551173 Chr2 24089089 24089090 - RETROSAT2LTR 12796 0.0003 (1/2994) 0 * * Os_TE_551172 Chr2 24087429 24087430 + RETROSAT4_LTR 13504 0.0212 (63/2971) 0 * * Os_TE_551158 Chr2 24082555 24082556 + WUWU 113 0.0013 (4/2967) 0 * * Os_TE_551135 Chr2 24077779 24077780 + TESSBIG 4057 0.0010 (3/2984) 0 * Os_TE_551134 Os_TE_551134 Chr2 24077772 24077771 - TESSBIG 4057 0.0011 (3/2810) 0 * Os_TE_551135 Os_TE_551133 Chr2 24077707 24077706 - ORSgTEMT02000040 196 0.0013 (4/2986) 0 * * Os_TE_551120 Chr2 24075074 24075075 - TYPEM 227 0.0003 (1/2958) 0 * Os_TE_551119 Os_TE_551119 Chr2 24075073 24075072 - ORSgTEMT02400179 221 0.0003 (1/2955) 0 * Os_TE_551120 Os_TE_551115 Chr2 24072956 24072957 + ORSiTERTOOT00296 5553 0.0003 (1/2989) 0 * * Os_TE_551107 Chr2 24067322 24067323 + ORSgTEMT00700017 386 0.0017 (5/2984) 0 * * Os_TE_551096 Chr2 24066558 24066557 + ORSgTEMT00600376 329 0.0028 (8/2906) 0 * * Os_TE_551089 Chr2 24059470 24059471 - SZ-62LTR 3649 0.0015 (4/2701) 0 * * Os_TE_551069 Chr2 24053137 24053138 + TWIFB1 3737 0.0169 (50/2956) 0 * * Os_TE_551061 Chr2 24048678 24048679 - F770 284 0.0007 (2/2996) 0 * Os_TE_551060 Os_TE_551060 Chr2 24048676 24048675 + F770 284 0.0007 (2/2996) 0 * Os_TE_551061 Os_TE_551049 Chr2 24042934 24032642 + COPIO_LTR 11693 0.3250 (970/2985) 1 Intact * Os_TE_551025 Chr2 24030306 24030307 - SC-3_LTR 5748 0.0003 (1/2989) 0 * Os_TE_551024 Os_TE_551024 Chr2 24030302 24030301 + ORSiTERTOOT00296 5553 0.0003 (1/2988) 0 * Os_TE_551025 Os_TE_551004 Chr2 24026392 24026393 - TYPEM 227 0.0044 (13/2966) 0 * * Os_TE_550990 Chr2 24021417 24021418 - INDITTO 263 0.0003 (1/2981) 0 * Os_TE_550989 Os_TE_550989 Chr2 24021415 24021414 + INDITTO 263 0.0007 (2/2986) 0 * Os_TE_550990 Os_TE_550980 Chr2 24020303 24020304 + ORSgTETNOOT00221 261 0.0014 (4/2909) 0 * Os_TE_550979 Os_TE_550979 Chr2 24020301 24020300 + INDITTO 263 0.0014 (4/2895) 0 * Os_TE_550980 Os_TE_550971 Chr2 24018321 24018322 - NDNA1TNA_OS 334 0.1149 (341/2969) 0 * Os_TE_550970 Os_TE_550970 Chr2 24018319 24018318 + NDNA1TNA_OS 334 0.1203 (358/2975) 0 * Os_TE_550971 Os_TE_550959 Chr2 24017424 24017423 + RETROSAT4_LTR 13504 0.0007 (2/2818) 0 * * Os_TE_550958 Chr2 24017059 24017060 - SZ-46LTR 3360 0.0015 (3/2046) 0 * * Os_TE_550953 Chr2 24015452 24015451 + OSTE18 129 0.0003 (1/2997) 0 * Os_TE_550952 Os_TE_550952 Chr2 24015448 24015449 - OSTE18 129 0.0003 (1/2998) 0 * Os_TE_550953 Os_TE_550937 Chr2 24007581 24007582 + RETRO2A_LTR 12895 0.0004 (1/2594) 0 * * Os_TE_550916 Chr2 24004616 24004615 + MERMITED 1572 0.0003 (1/2947) 0 * * Os_TE_550915 Chr2 24004547 24004546 + TRUNCATOR 2918 0.0184 (55/2997) 0 * Os_TE_550914 Os_TE_550914 Chr2 24004546 24004547 - TRUNCATOR 2918 0.0171 (51/2991) 0 * Os_TE_550915 Os_TE_550911 Chr2 24004055 24004056 + ORSgTEMT02000085 229 0.0013 (2/1577) 0 * * Os_TE_550909 Chr2 24003241 24003242 + TRUNCATOR 2918 0.0184 (55/2985) 0 * * Os_TE_550897 Chr2 23997366 23997367 - NDNA1TNA_OS 334 0.0003 (1/2973) 0 * * Os_TE_550891 Chr2 23996728 23996729 - RETRO2_LTR 12874 0.0003 (1/2940) 0 * * Os_TE_550888 Chr2 23995734 23995735 - RIRE2_LTR 11306 0.0010 (3/2976) 0 * * Os_TE_550881 Chr2 23989474 23989475 + TYPEU4 402 0.0017 (5/2996) 0 * Os_TE_550880 Os_TE_550880 Chr2 23989466 23989465 - TYPEU1 380 0.0017 (5/2996) 0 * Os_TE_550881 Os_TE_550878 Chr2 23989296 23989295 + F770 284 0.0003 (1/2993) 0 * * Os_TE_550873 Chr2 23988270 23988271 - TOUNJ-30 377 0.0003 (1/2993) 0 * * Os_TE_550871 Chr2 23987362 23987363 - AMYLTP 383 0.0017 (5/2994) 0 * Os_TE_550870 Os_TE_550870 Chr2 23987354 23987353 + AMYLTP 383 0.0013 (4/2994) 0 * Os_TE_550871 Os_TE_550856 Chr2 23981265 23981266 - STOWAWAY50_OS 174 0.2150 (640/2977) 0 * * Os_TE_550855 Chr2 23980038 23980037 - ORSgTEMT01400022 212 0.2111 (627/2970) 0 * * Os_TE_550851 Chr2 23977379 23977541 - F569 228 0.7951 (2383/2997) 1 Intact * Os_TE_550849 Chr2 23977050 23977049 - STOWAWAY47_OS 148 0.2199 (658/2992) 0 * * Os_TE_550847 Chr2 23976836 23976837 + INDITTO 263 0.2098 (621/2960) 0 * Os_TE_550846 Os_TE_550846 Chr2 23976834 23976833 + ORSgTETNOOT00221 261 0.2212 (660/2984) 0 * Os_TE_550847 Os_TE_550845 Chr2 23976721 23976722 - INDITTO 263 0.0004 (1/2831) 0 * Os_TE_550844 Os_TE_550844 Chr2 23976719 23976718 + CASTAWAY 364 0.0619 (150/2424) 0 * Os_TE_550845 Os_TE_550837 Chr2 23972951 23972952 - COPIA2-LTR_OS 6433 0.0004 (1/2375) 0 * * Os_TE_550819 Chr2 23966266 23966267 - SZ-22_LTR 4403 0.0005 (1/2204) 0 * Os_TE_550818 Os_TE_550818 Chr2 23966262 23966261 + ORSiTERTOOT00226 792 0.0004 (1/2267) 0 * Os_TE_550819 Os_TE_550778 Chr2 23953964 23953965 - TOUNJ-30 377 0.0399 (95/2379) 0 * Os_TE_550777 Os_TE_550777 Chr2 23953962 23953961 + TOUNJ-30 377 0.0484 (96/1984) 0 * Os_TE_550778 Os_TE_550773 Chr2 23951571 23951572 + TRUNCATOR2_LTR 2904 0.0012 (3/2408) 0 * Os_TE_550772 Os_TE_550772 Chr2 23951567 23951566 - TRUNCATOR2_LTR 2904 0.0012 (3/2407) 0 * Os_TE_550773 Os_TE_550764 Chr2 23949259 23949260 + RETROSAT2LTR 12796 0.0058 (17/2944) 0 * * Os_TE_550713 Chr2 23905596 23905597 + SNAP-OL3 189 0.1956 (572/2925) 0 * Os_TE_550712 Os_TE_550712 Chr2 23905592 23905591 - SNAP-OL3 189 0.2047 (605/2955) 0 * Os_TE_550713 Os_TE_550710 Chr2 23903835 23903836 + ORSgTETNOOT01686 252 0.0003 (1/2995) 0 * Os_TE_550709 Os_TE_550709 Chr2 23903831 23903830 - ORSgTETNOOT00754 253 0.0003 (1/2997) 0 * Os_TE_550710 Os_TE_550708 Chr2 23903513 23903514 - RIRE2_LTR 11306 0.0042 (10/2390) 0 * Os_TE_550707 Os_TE_550707 Chr2 23903509 23903508 - ORSgTERT00201216 11284 0.0030 (9/2995) 0 * Os_TE_550708 Os_TE_550695 Chr2 23901824 23902075 - ORSgTETNOOT01607 258 0.3402 (1017/2989) 1 Intact * Os_TE_550684 Chr2 23898843 23898842 - ORSiTETNOOT00134 607 0.0004 (1/2833) 0 * * Os_TE_550675 Chr2 23884603 23884604 + RIREX_LTR 8828 0.0003 (1/2989) 0 * * Os_TE_550674 Chr2 23884518 23884519 - MERMITEA 1710 0.0023 (7/2996) 0 * * Os_TE_550671 Chr2 23884451 23884452 + MERMITEJ 1498 0.0003 (1/2997) 0 * Os_TE_550670 Os_TE_550670 Chr2 23884443 23884442 + MERMITEJ 1498 0.0003 (1/2997) 0 * Os_TE_550671 Os_TE_550667 Chr2 23884226 23884227 - MuDR2_OS 6770 0.0030 (9/2997) 0 * Os_TE_550666 Os_TE_550666 Chr2 23884217 23884216 + MuDR2_OS 6770 0.0030 (9/2997) 0 * Os_TE_550667 Os_TE_550655 Chr2 23881822 23881823 - ORSgTETNOOT00754 253 0.0003 (1/2929) 0 * Os_TE_550654 Os_TE_550654 Chr2 23881820 23881819 + ORSgTETNOOT00754 253 0.0003 (1/2940) 0 * Os_TE_550655 Os_TE_550653 Chr2 23881686 23881687 + MPING 430 0.0018 (5/2775) 0 * Os_TE_550652 Os_TE_550652 Chr2 23881684 23881683 - MPING 430 0.0022 (6/2749) 0 * Os_TE_550653 Os_TE_550651 Chr2 23880923 23880924 + COPIA2-LTR_OS 6433 0.0003 (1/2949) 0 * Os_TE_550650 Os_TE_550650 Chr2 23880919 23880918 - COPIA2-LTR_OS 6433 0.0003 (1/2929) 0 * Os_TE_550651 Os_TE_550648 Chr2 23879822 23879821 + COPI2_LTR 4733 0.0003 (1/2984) 0 * * Os_TE_550647 Chr2 23878561 23878562 + ORSiTERTOOT00333 4719 0.0003 (1/2975) 0 * Os_TE_550646 Os_TE_550646 Chr2 23878558 23878557 - ORSiTERTOOT00333 4719 0.0003 (1/2986) 0 * Os_TE_550647 Os_TE_550642 Chr2 23877176 23877177 - SC-8_LTR 4951 0.0020 (6/2974) 0 * * Os_TE_550636 Chr2 23875861 23875862 - GAIJIN 147 0.0004 (1/2681) -1 * * Os_TE_550628 Chr2 23874916 23874917 - ORSgTEMT00700002 381 0.0007 (2/2894) 0 * * Os_TE_550616 Chr2 23865202 23865203 + MDR2 6967 0.0032 (9/2817) 0 * Os_TE_550615 Os_TE_550615 Chr2 23865192 23865191 - MDR2 6967 0.0032 (9/2818) 0 * Os_TE_550616 Os_TE_550611 Chr2 23859247 23859248 + RETRO2_LTR 12874 0.0037 (11/2991) 0 * Os_TE_550610 Os_TE_550610 Chr2 23859243 23859242 - RETRO2_LTR 12874 0.0043 (13/2993) 0 * Os_TE_550611 Os_TE_550593 Chr2 23849385 23849386 - COPI2_LTR 4733 0.0018 (5/2788) 0 * * Os_TE_550591 Chr2 23848302 23848303 - DS-RICE2N 613 0.2047 (610/2980) 0 * * Os_TE_550586 Chr2 23847568 23847567 - SZ-9LTR 965 0.0311 (93/2990) 0 * * Os_TE_550581 Chr2 23846678 23846679 - RIREX_LTR 8828 0.0112 (33/2953) 0 * Os_TE_550580 Os_TE_550580 Chr2 23846674 23846673 + RIREX_LTR 8828 0.0118 (35/2963) 0 * Os_TE_550581 Os_TE_550575 Chr2 23844638 23844639 - RIREX_LTR 8828 0.0023 (7/2987) 0 * * Os_TE_550564 Chr2 23843535 23843534 - STOWAWAY51_OS 246 0.0031 (9/2878) 0 * Os_TE_550563 Os_TE_550563 Chr2 23843529 23843530 + STOWAWAY51_OS 246 0.0035 (10/2892) 0 * Os_TE_550564 Os_TE_550560 Chr2 23841582 23841583 - RIRE5-LTR_OS 6427 0.0010 (3/2988) 0 * Os_TE_550559 Os_TE_550559 Chr2 23841575 23841574 + RIRE5-LTR_OS 6427 0.0010 (3/2988) 0 * Os_TE_550560 Os_TE_550554 Chr2 23840531 23840530 + RETROSAT4_LTR 13504 0.0027 (8/2981) 0 * * Os_TE_550551 Chr2 23839869 23839870 - MuDR4_OS 7610 0.0140 (34/2426) 0 * Os_TE_550550 Os_TE_550550 Chr2 23839863 23839862 - MuDR4_OS 7610 0.0120 (35/2918) 0 * Os_TE_550551 Os_TE_550546 Chr2 23838803 23838804 + RIREX_LTR 8828 0.0003 (1/2956) 0 * Os_TE_550545 Os_TE_550545 Chr2 23838799 23838798 - RIREX_LTR 8828 0.0003 (1/2952) 0 * Os_TE_550546 Os_TE_550524 Chr2 23837330 23837331 + ORSgTETNOOT00032 218 0.2277 (678/2977) 0 * * Os_TE_550512 Chr2 23835122 23835123 + RETROSAT4_LTR 13504 0.0023 (4/1729) 0 * * Os_TE_550496 Chr2 23828722 23828721 - ORSgTEMT02400246 177 0.0030 (9/2996) 0 * * Os_TE_550494 Chr2 23828602 23828601 + KRISPIE 956 0.0003 (1/2999) 0 * * Os_TE_550485 Chr2 23822649 23822648 - ORSiTERTOOT00402 2660 0.0003 (1/2987) 0 * * Os_TE_550471 Chr2 23820004 23820005 - SZ-48LTR 3632 0.0343 (96/2797) 0 * * Os_TE_550468 Chr2 23819443 23819442 - INDITTO 263 0.0021 (6/2808) 0 * * Os_TE_550461 Chr2 23817532 23817531 - FOCUS 257 0.0003 (1/2986) 0 * * Os_TE_550460 Chr2 23816150 23816151 + STOWAWAY21_OS 243 0.0701 (207/2955) 0 * * Os_TE_550458 Chr2 23815252 23815253 + RETROSAT4_LTR 13504 0.0010 (3/2991) 0 * Os_TE_550457 Os_TE_550457 Chr2 23815248 23815247 - SZ-35LTR 3853 0.0011 (3/2801) 0 * Os_TE_550458 Os_TE_550434 Chr2 23800832 23800833 - COPIA2-LTR_OS 6433 0.0004 (1/2568) 0 * Os_TE_550433 Os_TE_550433 Chr2 23800828 23800827 + COPIA2-LTR_OS 6433 0.0004 (1/2568) 0 * Os_TE_550434 Os_TE_550432 Chr2 23800649 23800648 - TRUNCATOR 2918 0.0063 (16/2549) 0 * * Os_TE_550430 Chr2 23800616 23800617 - OSTE20 496 0.0047 (12/2552) 0 * * Os_TE_550428 Chr2 23800533 23800532 + RETRO1_LTR 8314 0.0137 (35/2559) 0 * * Os_TE_550427 Chr2 23799442 23799443 + ORSiTERTOOT00226 792 0.0004 (1/2589) 0 * Os_TE_550426 Os_TE_550426 Chr2 23799438 23799437 + ORSiTERTOOT00226 792 0.0004 (1/2588) 0 * Os_TE_550427 Os_TE_550406 Chr2 23787380 23787381 - RETRO2_LTR 12874 0.1466 (438/2988) 0 * * Os_TE_550404 Chr2 23787204 23787205 + SZ-35LTR 3853 0.0074 (22/2989) 0 * * Os_TE_550398 Chr2 23783581 23783582 + ORSiTERTOOT00333 4719 0.0034 (10/2949) 0 * Os_TE_550397 Os_TE_550397 Chr2 23783578 23783577 - ORSiTERTOOT00333 4719 0.0041 (12/2932) 0 * Os_TE_550398 Os_TE_550373 Chr2 23763288 23763287 - TRUNCATOR 2918 0.1454 (435/2992) 0 * * Os_TE_550365 Chr2 23758334 23758335 + CRM-LTR_OS 7749 0.2063 (618/2996) 0 * Os_TE_550364 Os_TE_550364 Chr2 23758330 23758329 - CRM-LTR_OS 7749 0.2040 (610/2990) 0 * Os_TE_550365 Os_TE_550358 Chr2 23757147 23757146 + NDNA1TNA_OS 334 0.0003 (1/2977) 0 * Os_TE_550357 Os_TE_550357 Chr2 23757146 23757147 + ORSgTEMT00100272 356 0.0003 (1/2973) 0 * Os_TE_550358 Os_TE_550356 Chr2 23757033 23757034 + NDNA1TNA_OS 334 0.0003 (1/2996) 0 * Os_TE_550355 Os_TE_550355 Chr2 23757031 23757030 - NDNA1TNA_OS 334 0.0003 (1/2994) 0 * Os_TE_550356 Os_TE_550339 Chr2 23748834 23748833 - NDNA1TNA_OS 334 0.0003 (1/2990) 0 * * Os_TE_550338 Chr2 23748810 23748811 - INDITTO 263 0.0017 (5/2996) 0 * Os_TE_550337 Os_TE_550337 Chr2 23748808 23748807 + INDITTO 263 0.0017 (5/2989) 0 * Os_TE_550338 Os_TE_550328 Chr2 23745043 23745042 + MERMITEB 1610 0.0057 (17/2986) 0 * * Os_TE_550310 Chr2 23739186 23739187 - ORSgTEMT00900099 250 0.0013 (4/2977) 0 * * Os_TE_550300 Chr2 23736645 23736646 - AMYLTP 383 0.2053 (592/2883) 0 * * Os_TE_550290 Chr2 23735807 23735808 - CACTA-Q 2268 0.0017 (5/2985) 0 * * Os_TE_550227 Chr2 23702737 23702738 - SZ-48LTR 3632 0.0064 (19/2973) 0 * * Os_TE_550225 Chr2 23702570 23702571 + RETROSAT4_LTR 13504 0.0003 (1/2988) 0 * Os_TE_550224 Os_TE_550224 Chr2 23702566 23702565 - RETROSAT4_LTR 13504 0.0003 (1/2984) 0 * Os_TE_550225 Os_TE_550177 Chr2 23684623 23684622 - ORSgTEMT03000024 384 0.0031 (9/2940) 0 * * Os_TE_550176 Chr2 23677565 23677566 + ORSgTERT00200875 5747 0.0007 (2/2821) 0 * * Os_TE_550155 Chr2 23667372 23667373 - ORSgTEMT02400148 214 0.0063 (19/2995) 0 * * Os_TE_550154 Chr2 23667281 23667280 - ORSgTEMT01601768 238 0.0624 (186/2983) 0 * Os_TE_550153 Os_TE_550153 Chr2 23667278 23667279 - ORSgTEMT01601432 239 0.0642 (192/2992) 0 * Os_TE_550154 Os_TE_550145 Chr2 23659403 23659404 + F569 228 0.0017 (5/2940) 0 * Os_TE_550144 Os_TE_550144 Chr2 23659401 23659400 - F569 228 0.0017 (5/2987) 0 * Os_TE_550145 Os_TE_550127 Chr2 23646378 23646377 + F569 228 0.0054 (16/2972) 0 * Os_TE_550126 Os_TE_550126 Chr2 23646369 23646370 - F569 228 0.0054 (16/2968) 0 * Os_TE_550127 Os_TE_550122 Chr2 23642177 23642176 - SZ-35LTR 3853 0.6471 (1931/2984) 0 * * Os_TE_550119 Chr2 23641464 23641463 + COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * * Os_TE_550107 Chr2 23638127 23638128 - RETROSAT2LTR 12796 0.5033 (1506/2992) 0 * * Os_TE_550100 Chr2 23637473 23637472 + STOWAWAY45_OS 266 0.0004 (1/2489) 0 * * Os_TE_550095 Chr2 23636681 23636680 + ORSgTETNOOT00032 218 0.0030 (9/2980) 0 * * Os_TE_550089 Chr2 23631388 23631389 + COPIA2-LTR_OS 6433 0.0010 (3/2963) 0 * * Os_TE_550071 Chr2 23607366 23607367 + ORSiTERTOOT00074 4935 0.0023 (7/2994) 0 * Os_TE_550070 Os_TE_550070 Chr2 23607362 23607361 - ORSiTERTOOT00074 4935 0.0023 (7/2989) 0 * Os_TE_550071 Os_TE_550062 Chr2 23604402 23604403 + RETRO1_LTR 8314 0.0007 (2/2973) 0 * * Os_TE_550038 Chr2 23593356 23593357 - INDITTO 263 0.0054 (16/2988) 0 * Os_TE_550037 Os_TE_550037 Chr2 23593354 23593353 + INDITTO 263 0.0050 (15/2984) 0 * Os_TE_550038 Os_TE_550000 Chr2 23572934 23569316 - ORSiTETNOOT00147 3619 0.1024 (306/2987) 1 Intact Os_TE_549999 Os_TE_549999 Chr2 23569316 23572934 + ORSiTETNOOT00147 3619 0.1680 (307/1827) 1 Intact Os_TE_550000 Os_TE_549992 Chr2 23564355 23564354 + ORSiTERTOOT00296 5553 0.0003 (1/2997) 0 * * Os_TE_549979 Chr2 23558497 23558498 - DNAUN1_OS 408 0.0815 (244/2994) 0 * * Os_TE_549975 Chr2 23558217 23558218 - TYPEM 227 0.0105 (31/2961) 0 * Os_TE_549974 Os_TE_549974 Chr2 23558216 23558215 - ORSgTEMT02400179 221 0.0088 (26/2951) 0 * Os_TE_549975 Os_TE_549956 Chr2 23549001 23549002 + TNR2A 152 0.0010 (3/2996) 0 * Os_TE_549955 Os_TE_549955 Chr2 23548985 23548984 - TNR2A 152 0.0003 (1/2993) 0 * Os_TE_549956 Os_TE_549951 Chr2 23544196 23544197 - ORSgTEMT00900817 229 0.0871 (260/2986) 0 * * Os_TE_549949 Chr2 23544043 23544044 - RIREX_LTR 8828 0.0010 (3/2997) 0 * Os_TE_549948 Os_TE_549948 Chr2 23544039 23544038 + RIREX_LTR 8828 0.0011 (3/2764) 0 * Os_TE_549949 Os_TE_549947 Chr2 23543911 23543910 + STOWAWAY51_OS 246 0.0013 (4/2997) 0 * Os_TE_549946 Os_TE_549946 Chr2 23543905 23543906 + ORSgTEMT01601591 242 0.0013 (4/2996) 0 * Os_TE_549947 Os_TE_549924 Chr2 23533755 23533493 + INDITTO 263 0.1460 (321/2199) 1 Intact Os_TE_549923 Os_TE_549923 Chr2 23533493 23533755 - INDITTO 263 0.1221 (318/2604) 1 Intact Os_TE_549924 Os_TE_549918 Chr2 23527124 23527125 - MPING 430 0.0003 (1/2960) 0 * Os_TE_549917 Os_TE_549917 Chr2 23527122 23527121 + MPING 430 0.0003 (1/2980) 0 * Os_TE_549918 Os_TE_549900 Chr2 23522943 23522944 - TRUNCATOR 2918 0.0636 (185/2910) 0 * * Os_TE_549898 Chr2 23522810 23522809 + RIREX_LTR 8828 0.0004 (1/2847) 0 * * Os_TE_549893 Chr2 23521711 23520304 + OSTE33 1012 0.1029 (305/2963) 1 Intact Os_TE_549892 Os_TE_549892 Chr2 23520304 23521711 - OSTE33 1012 0.1115 (307/2753) 1 Intact Os_TE_549893 Os_TE_549891 Chr2 23520220 23520219 + OLO24 345 0.0877 (251/2862) 0 * * Os_TE_549888 Chr2 23519074 23519075 - AMYLTP 383 0.1183 (345/2916) 0 * Os_TE_549887 Os_TE_549887 Chr2 23519066 23519065 + AMYLTP 383 0.1356 (402/2965) 0 * Os_TE_549888 Os_TE_549874 Chr2 23514422 23514423 + ORSgTEMT00100272 356 0.0284 (85/2989) 0 * * Os_TE_549873 Chr2 23514314 23514183 + ORSgTEMT01700637 157 0.3850 (1141/2964) 1 Intact Os_TE_549870 Os_TE_549870 Chr2 23514180 23514308 + ORSgTEMT01701663 106 0.3999 (1070/2676) 1 Intact Os_TE_549873 Os_TE_549869 Chr2 23514173 23514174 + F770 284 0.0345 (88/2551) 0 * * Os_TE_549867 Chr2 23513920 23513673 - ORSgTEMT00901138 254 0.3821 (1133/2965) 1 Intact * Os_TE_549848 Chr2 23508229 23508228 + TYPEM 227 0.6362 (1887/2966) 0 * * Os_TE_549817 Chr2 23502457 23502456 - UNIQUE 158 0.6324 (1879/2971) 0 * Os_TE_549816 Os_TE_549816 Chr2 23502456 23502457 + ORSiTEMT03300001 145 0.6386 (1912/2994) 0 * Os_TE_549817 Os_TE_549815 Chr2 23501274 23501273 + STOWAWAY51_OS 246 0.0017 (4/2378) 0 * Os_TE_549814 Os_TE_549814 Chr2 23501268 23501269 + ORSgTEMT01601591 242 0.0028 (4/1430) 0 * Os_TE_549815 Os_TE_549808 Chr2 23498226 23498227 + TWIFBIG 3567 0.0071 (19/2658) 0 * * Os_TE_549805 Chr2 23496396 23496395 + ORSgTEMT02400014 229 0.1440 (406/2820) 0 * Os_TE_549804 Os_TE_549804 Chr2 23496392 23496393 - ORSgTEMT02400246 177 0.1535 (387/2521) 0 * Os_TE_549805 Os_TE_549787 Chr2 23491236 23491235 + COPI2_LTR 4733 0.0003 (1/2921) 0 * * Os_TE_549786 Chr2 23490934 23490935 + JOUZHENA 607 0.0014 (4/2905) 0 * Os_TE_549785 Os_TE_549785 Chr2 23490927 23490926 - JOUZHENA 607 0.0017 (5/2908) 0 * Os_TE_549786 Os_TE_549760 Chr2 23482670 23482671 + ORSiTERTOOT00381 4988 0.0013 (4/2969) 0 * Os_TE_549759 Os_TE_549759 Chr2 23482666 23482665 - SC-8_LTR 4951 0.0014 (4/2960) 0 * Os_TE_549760 Os_TE_549754 Chr2 23481286 23481287 + ORSgTEMT01700487 156 0.6334 (1890/2984) 0 * * Os_TE_549747 Chr2 23479962 23479722 - STOWAWAY45_OS 266 0.3856 (1090/2827) 1 Intact * Os_TE_549745 Chr2 23479367 23479368 - ORSgTEMT01702186 155 0.0017 (5/2957) 0 * * Os_TE_549741 Chr2 23479080 23479182 - ORSgTEMT00500578 129 0.3803 (1125/2958) 1 Intact * Os_TE_549739 Chr2 23478839 23471207 + RIREX_LTR 8828 0.1053 (314/2983) 1 Intact Os_TE_549737 Os_TE_549737 Chr2 23471207 23478839 - RIREX_LTR 8828 0.1050 (314/2990) 1 Intact Os_TE_549739 Os_TE_549736 Chr2 23470944 23470945 + MERMITEJ 1498 0.0008 (2/2612) 0 * Os_TE_549735 Os_TE_549735 Chr2 23470939 23470938 - MERMITED 1572 0.0007 (2/2971) 0 * Os_TE_549736 Os_TE_549728 Chr2 23469393 23469392 + RIREX_LTR 8828 0.0772 (228/2953) 0 * * Os_TE_549726 Chr2 23469024 23469025 - ORSgTERT00201216 11284 0.0010 (3/2986) 0 * * Os_TE_549712 Chr2 23454576 23454575 + ORSgTEMT05000092 279 0.0017 (5/2974) 0 * * Os_TE_549706 Chr2 23448729 23448730 - COPIA2-LTR_OS 6433 0.0003 (1/2937) 0 * Os_TE_549705 Os_TE_549705 Chr2 23448725 23448724 + COPIA2-LTR_OS 6433 0.0007 (2/2915) 0 * Os_TE_549706 Os_TE_549701 Chr2 23446573 23446367 + F770 284 0.7565 (780/1031) 1 Intact * Os_TE_549652 Chr2 23414855 23414854 + ORSgTERT00200342 5828 0.0104 (7/670) 0 * * Os_TE_549634 Chr2 23403101 23403100 - AMYLTP 383 0.0128 (38/2966) -1 * * Os_TE_549626 Chr2 23391141 23391140 - INDITTO 263 0.4751 (1409/2966) 0 * * Os_TE_549625 Chr2 23391084 23390931 + ORSgTEMT01700789 143 0.5527 (1626/2942) 1 Intact * Os_TE_549622 Chr2 23390905 23390904 + STOWAWAY9_OS 235 0.4763 (1268/2662) 0 * * Os_TE_549562 Chr2 23275231 23275230 + ORSiTERTOOT00296 5553 0.0010 (3/2996) 0 * * Os_TE_549520 Chr2 23254709 23254710 + ORSiTERTOOT00382 5890 0.0440 (132/2997) 0 * Os_TE_549519 Os_TE_549519 Chr2 23254705 23254704 - ORSiTERTOOT00382 5890 0.0431 (129/2996) 0 * Os_TE_549520 Os_TE_549518 Chr2 23254526 23248470 + OSTONOR1_LTR 6440 0.1020 (305/2990) 1 Intact Os_TE_549517 Os_TE_549517 Chr2 23248470 23254526 - ORSiTERT00100062 5674 0.1029 (308/2994) 1 Intact Os_TE_549518 Os_TE_549510 Chr2 23246058 23246059 - SZ-22_LTR 4403 0.0050 (15/2977) 0 * * Os_TE_549505 Chr2 23244599 23244598 - ORSgTERT00100663 207 0.0004 (1/2242) 0 * * Os_TE_549487 Chr2 23230938 23230939 - COPIA2-LTR_OS 6433 0.0007 (2/2999) 0 * Os_TE_549486 Os_TE_549486 Chr2 23230934 23230933 + COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_549487 Os_TE_549484 Chr2 23229417 23229418 - INDITTO 263 0.0003 (1/2988) 0 * Os_TE_549483 Os_TE_549483 Chr2 23229415 23229414 + INDITTO 263 0.0003 (1/2989) 0 * Os_TE_549484 Os_TE_549477 Chr2 23227068 23227067 + MPING 430 0.0003 (1/2985) 0 * * Os_TE_549473 Chr2 23223985 23223986 - RETRO2_LTR 12874 0.1555 (462/2971) 0 * * Os_TE_549466 Chr2 23222063 23222064 - SZ-62LTR 3649 0.0505 (106/2098) 0 * * Os_TE_549454 Chr2 23219679 23219680 - COPIA2-LTR_OS 6433 0.0030 (9/2990) 0 * Os_TE_549453 Os_TE_549453 Chr2 23219675 23219674 + COPIA2-LTR_OS 6433 0.0027 (8/2988) 0 * Os_TE_549454 Os_TE_549450 Chr2 23219274 23219275 - RIRE5-LTR_OS 6427 0.0131 (36/2748) 0 * Os_TE_549449 Os_TE_549449 Chr2 23219267 23219266 + RIRE5-LTR_OS 6427 0.0111 (33/2979) 0 * Os_TE_549450 Os_TE_549441 Chr2 23214368 23214369 - RIRE2_LTR 11306 0.1599 (478/2990) 0 * Os_TE_549440 Os_TE_549440 Chr2 23214364 23214363 + RIRE2_LTR 11306 0.1596 (477/2988) 0 * Os_TE_549441 Os_TE_549438 Chr2 23212992 23212993 + STOWAWAY49_OS 241 0.2691 (801/2977) 0 * * Os_TE_549423 Chr2 23209829 23209830 + RIRE2_LTR 11306 0.0020 (6/2988) 0 * * Os_TE_549383 Chr2 23188261 23188260 + F770 284 0.1608 (479/2978) 0 * * Os_TE_549381 Chr2 23187872 23187871 - ORSgTEMT02400179 221 0.0003 (1/2989) 0 * * Os_TE_549366 Chr2 23179911 23179912 - SC-3_LTR 5748 0.0138 (36/2603) 0 * Os_TE_549365 Os_TE_549365 Chr2 23179907 23179906 + ORSiTERTOOT00296 5553 0.0117 (35/2983) 0 * Os_TE_549366 Os_TE_549360 Chr2 23175179 23175178 - ORSgTEMT02000041 194 0.0073 (22/2995) 0 * * Os_TE_549355 Chr2 23174245 23174246 + ORSgTEMT00600124 361 0.0346 (102/2951) 0 * Os_TE_549354 Os_TE_549354 Chr2 23174243 23174242 + ORSgTEMT00600287 363 0.0352 (104/2955) 0 * Os_TE_549355 Os_TE_549345 Chr2 23170877 23170878 - SZ-67LTR 1540 0.0017 (5/2938) 0 * Os_TE_549344 Os_TE_549344 Chr2 23170873 23170872 + SZ-67LTR 1540 0.0017 (5/2932) 0 * Os_TE_549345 Os_TE_549340 Chr2 23170443 23170444 - INDITTO 263 0.0354 (105/2970) 0 * Os_TE_549339 Os_TE_549339 Chr2 23170441 23170440 - ORSgTETNOOT02000 263 0.0347 (103/2970) 0 * Os_TE_549340 Os_TE_549326 Chr2 23167356 23167357 - COPIA2-LTR_OS 6433 0.0004 (1/2759) 0 * * Os_TE_549321 Chr2 23166216 23166215 + ORSgTETNOOT00908 242 0.3192 (951/2979) 0 * * Os_TE_549317 Chr2 23164808 23164807 - RETROSAT2LTR 12796 0.0019 (4/2067) 0 * * Os_TE_549310 Chr2 23163441 23163442 - ORSiTETNOOT00200 3563 0.2875 (835/2904) 0 * Os_TE_549309 Os_TE_549309 Chr2 23163434 23163433 + TWIF 586 0.2999 (883/2944) 0 * Os_TE_549310 Os_TE_549302 Chr2 23159186 23159187 + ORSgTETNOOT01219 231 0.0094 (26/2753) 0 * Os_TE_549301 Os_TE_549301 Chr2 23159179 23159178 + ORSgTETNOOT00908 242 0.0111 (31/2803) 0 * Os_TE_549302 Os_TE_549300 Chr2 23159007 23159008 - AMYLTP 383 0.0071 (17/2392) 0 * Os_TE_549299 Os_TE_549299 Chr2 23158999 23158998 + AMYLTP 383 0.0071 (17/2395) 0 * Os_TE_549300 Os_TE_549279 Chr2 23156479 23156480 + MPING 430 0.0040 (12/2991) 0 * Os_TE_549278 Os_TE_549278 Chr2 23156477 23156476 - MPING 430 0.0040 (12/2995) 0 * Os_TE_549279 Os_TE_549274 Chr2 23153170 23153171 + MPING 430 0.0003 (1/2993) 0 * Os_TE_549273 Os_TE_549273 Chr2 23153168 23153167 - MPING 430 0.0003 (1/2992) 0 * Os_TE_549274 Os_TE_549271 Chr2 23151692 23145146 - RIRE2_LTR 11306 0.1023 (305/2980) 1 Intact Os_TE_549266 Os_TE_549266 Chr2 23145146 23151692 + RIRE2_LTR 11306 0.1023 (304/2972) 1 Intact Os_TE_549271 Os_TE_549264 Chr2 23144835 23144836 - INDITTO 263 0.3355 (998/2975) 0 * Os_TE_549263 Os_TE_549263 Chr2 23144833 23144832 + INDITTO 263 0.3379 (1008/2983) 0 * Os_TE_549264 Os_TE_549262 Chr2 23144807 23144808 - INDITTO 263 0.0030 (9/2982) 0 * * Os_TE_549242 Chr2 23141134 23141135 + RETRO2_LTR 12874 0.0003 (1/2972) 0 * Os_TE_549241 Os_TE_549241 Chr2 23141130 23141129 - RETRO2_LTR 12874 0.0003 (1/2971) 0 * Os_TE_549242 Os_TE_549234 Chr2 23132110 23132109 - STOWAWAY51_OS 246 0.0003 (1/2997) 0 * Os_TE_549233 Os_TE_549233 Chr2 23132107 23132108 + ORSgTEMT01601591 242 0.0003 (1/2997) 0 * Os_TE_549234 Os_TE_549232 Chr2 23131782 23131783 - TESS 244 0.0003 (1/2995) 0 * Os_TE_549231 Os_TE_549231 Chr2 23131775 23131774 + TESS 244 0.0003 (1/2991) 0 * Os_TE_549232 Os_TE_549230 Chr2 23131731 23131732 + NDNA1TNA_OS 334 0.0007 (2/2992) 0 * Os_TE_549229 Os_TE_549229 Chr2 23131729 23131728 - NDNA1TNA_OS 334 0.0003 (1/2996) 0 * Os_TE_549230 Os_TE_549222 Chr2 23130013 23130014 + MIDWAY 985 0.0017 (5/2986) 0 * Os_TE_549221 Os_TE_549221 Chr2 23130006 23130005 - MIDWAY 985 0.0017 (5/2984) 0 * Os_TE_549222 Os_TE_549196 Chr2 23122635 23122636 + MPING 430 0.0003 (1/2968) 0 * Os_TE_549195 Os_TE_549195 Chr2 23122633 23122632 - MPING 430 0.0003 (1/2964) 0 * Os_TE_549196 Os_TE_549178 Chr2 23111084 23111085 - RETRO1_LTR 8314 0.0020 (6/2982) 0 * Os_TE_549177 Os_TE_549177 Chr2 23111080 23111079 + RETRO1_LTR 8314 0.0020 (6/2995) 0 * Os_TE_549178 Os_TE_549174 Chr2 23108174 23108175 - TYPEH 309 0.0013 (4/2988) 0 * * Os_TE_549173 Chr2 23108118 23108117 - TYPEH 309 0.0047 (14/2998) 0 * Os_TE_549172 Os_TE_549172 Chr2 23108117 23108118 + ORSgTEMT01900027 302 0.0040 (12/2994) 0 * Os_TE_549173 Os_TE_549169 Chr2 23105594 23105595 + SZ-67LTR 1540 0.0013 (4/2983) 0 * Os_TE_549168 Os_TE_549168 Chr2 23105590 23105589 - SZ-67LTR 1540 0.0013 (4/2992) 0 * Os_TE_549169 Os_TE_549153 Chr2 23102970 23102969 + TWIF 586 0.0003 (1/2860) 0 * * Os_TE_549150 Chr2 23100296 23100295 - RETROSAT4_LTR 13504 0.0023 (7/2997) 0 * * Os_TE_549139 Chr2 23096305 23096304 + ORSgTETNOOT01834 251 0.0003 (1/2993) 0 * * Os_TE_549138 Chr2 23095578 23095579 + SEVERIN-2 1952 0.0071 (21/2974) 0 * * Os_TE_549130 Chr2 23094277 23094278 - GAIJIN 147 0.0040 (12/2990) 0 * * Os_TE_549128 Chr2 23094241 23094242 + OSTONOR1_LTR 6440 0.0020 (6/2986) 0 * * Os_TE_549093 Chr2 23087995 23087994 - ORSgTEMT00900099 250 0.0182 (54/2961) 0 * * Os_TE_549089 Chr2 23086472 23086473 + MPING 430 0.0004 (1/2807) 0 * Os_TE_549088 Os_TE_549088 Chr2 23086470 23086469 - MPING 430 0.0004 (1/2776) 0 * Os_TE_549089 Os_TE_549077 Chr2 23080505 23080504 - STOWAWAY51_OS 246 0.0067 (20/2985) 0 * * Os_TE_549074 Chr2 23079589 23079588 - COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * * Os_TE_549066 Chr2 23078452 23078453 + ORSgTETNOOT01998 254 0.0174 (49/2809) 0 * Os_TE_549065 Os_TE_549065 Chr2 23078450 23078449 + ORSgTETNOOT00818 268 0.0199 (56/2814) 0 * Os_TE_549066 Os_TE_549051 Chr2 23076873 23076872 - ORSgTEMT00500578 129 0.0182 (53/2907) 0 * * Os_TE_549043 Chr2 23076273 23076129 - TNR2A 152 0.2877 (862/2996) 1 Intact Os_TE_549042 Os_TE_549042 Chr2 23076127 23076272 - TNR2A 152 0.2855 (855/2995) 1 Intact Os_TE_549043 Os_TE_549038 Chr2 23075933 23075932 + ORSgTEMT00500385 153 0.0167 (50/2986) 0 * Os_TE_549036 Os_TE_549036 Chr2 23075898 23075899 - ORSgTEMT00900402 248 0.0174 (52/2993) 0 * Os_TE_549038 Os_TE_549024 Chr2 23072610 23072611 - TNR2A 152 0.0091 (25/2746) 0 * Os_TE_549023 Os_TE_549023 Chr2 23072594 23072593 + TNR2A 152 0.0074 (20/2720) 0 * Os_TE_549024 Os_TE_549021 Chr2 23069426 23069427 + ORSiTERTOOT00226 792 0.0013 (4/2971) 0 * Os_TE_549020 Os_TE_549020 Chr2 23069422 23069421 - SZ-22_LTR 4403 0.0013 (4/2999) 0 * Os_TE_549021 Os_TE_548956 Chr2 23042319 23042320 + NDNA1TNA_OS 334 0.0014 (4/2962) 0 * Os_TE_548955 Os_TE_548955 Chr2 23042317 23042316 - NDNA1TNA_OS 334 0.0007 (2/2967) 0 * Os_TE_548956 Os_TE_548946 Chr2 23035805 23035806 - DNAUN1_OS 408 0.5791 (1669/2882) 0 * * Os_TE_548928 Chr2 23028452 23028453 + MPING 430 0.0034 (10/2983) 0 * Os_TE_548927 Os_TE_548927 Chr2 23028450 23028449 - MPING 430 0.0034 (10/2985) 0 * Os_TE_548928 Os_TE_548910 Chr2 23026336 23026337 + INDITTO 263 0.0033 (10/2993) 0 * Os_TE_548909 Os_TE_548909 Chr2 23026334 23026333 - INDITTO 263 0.0033 (10/2995) 0 * Os_TE_548910 Os_TE_548895 Chr2 23019643 23019644 - NDNA1TNA_OS 334 0.0003 (1/2931) 0 * * Os_TE_548889 Chr2 23018533 23018534 + SPMLIKE 10989 0.0010 (3/2906) 0 * Os_TE_548888 Os_TE_548888 Chr2 23018531 23018530 - ORSgTETN00200001 10994 0.0010 (3/2896) 0 * Os_TE_548889 Os_TE_548839 Chr2 23006987 23006988 - ORSgTETNOOT01006 258 0.0010 (3/2991) 0 * * Os_TE_548835 Chr2 23004374 23004375 + SC-8_LTR 4951 0.0003 (1/2994) 0 * Os_TE_548834 Os_TE_548834 Chr2 23004370 23004369 - SC-8_LTR 4951 0.0003 (1/2994) 0 * Os_TE_548835 Os_TE_548832 Chr2 23000118 23000119 - STOWAWAY11_OS 292 0.0004 (1/2833) 0 * * Os_TE_548783 Chr2 22987651 22987652 + ORSgTETNOOT01219 231 0.0057 (17/2990) 0 * * Os_TE_548771 Chr2 22978220 22978221 - RIREX_LTR 8828 0.0003 (1/2985) 0 * Os_TE_548770 Os_TE_548770 Chr2 22978216 22978215 + RIREX_LTR 8828 0.0003 (1/2988) 0 * Os_TE_548771 Os_TE_548763 Chr2 22974739 22974740 + ORSiTERTOOT00296 5553 0.0003 (1/2996) 0 * Os_TE_548762 Os_TE_548762 Chr2 22974735 22974734 - SC-3_LTR 5748 0.0003 (1/2998) 0 * Os_TE_548763 Os_TE_548761 Chr2 22970882 22970883 - TELIA 141 0.0003 (1/2992) 0 * Os_TE_548760 Os_TE_548760 Chr2 22970874 22970873 + TELIA 141 0.0003 (1/2990) 0 * Os_TE_548761 Os_TE_548751 Chr2 22966763 22966762 + TYPEU2 382 0.0010 (3/2983) 0 * * Os_TE_548742 Chr2 22966133 22966134 + ORSgTEMT00500610 153 0.0004 (1/2395) 0 * * Os_TE_548691 Chr2 22941210 22941211 - MPING 430 0.0054 (16/2990) 0 * Os_TE_548690 Os_TE_548690 Chr2 22941208 22941207 + MPING 430 0.0051 (15/2927) 0 * Os_TE_548691 Os_TE_548669 Chr2 22925182 22925183 - TYPEG 427 0.0003 (1/2884) 0 * * Os_TE_548664 Chr2 22922173 22922174 - SC-8_LTR 4951 0.0010 (3/2994) 0 * Os_TE_548663 Os_TE_548663 Chr2 22922169 22922168 + SC-8_LTR 4951 0.0010 (3/2990) 0 * Os_TE_548664 Os_TE_548651 Chr2 22917834 22917833 - ORSgTEMT03800066 376 0.0499 (147/2947) 0 * * Os_TE_548613 Chr2 22910592 22910591 - ORSgTEMT00900145 249 0.0003 (1/2968) 0 * * Os_TE_548611 Chr2 22910145 22901550 + RIREX_LTR 8828 0.0430 (127/2952) 1 Intact Os_TE_548610 Os_TE_548610 Chr2 22901550 22910145 - RIREX_LTR 8828 0.0457 (135/2952) 1 Intact Os_TE_548611 Os_TE_548605 Chr2 22900776 22900777 - ORSiTERT00100062 5674 0.0331 (99/2991) 0 * * Os_TE_548576 Chr2 22891396 22891397 + COPIA2-LTR_OS 6433 0.0003 (1/2936) 0 * Os_TE_548575 Os_TE_548575 Chr2 22891392 22891391 - COPIA2-LTR_OS 6433 0.0003 (1/2939) 0 * Os_TE_548576 Os_TE_548573 Chr2 22890209 22890210 - SZ-55_LTR 10318 0.0003 (1/2929) 0 * Os_TE_548572 Os_TE_548572 Chr2 22890205 22890204 + SZ-55_LTR 10318 0.0003 (1/2926) 0 * Os_TE_548573 Os_TE_548533 Chr2 22864489 22864490 + MDR2 6967 0.0093 (28/2997) 0 * Os_TE_548532 Os_TE_548532 Chr2 22864481 22864480 + MDR2 6967 0.0093 (28/2998) 0 * Os_TE_548533 Os_TE_548521 Chr2 22861219 22861220 - DITTO 244 0.5473 (1637/2991) 0 * * Os_TE_548509 Chr2 22858636 22858637 - ORSgTETN00200001 10994 0.5164 (1539/2980) 0 * Os_TE_548508 Os_TE_548508 Chr2 22858634 22858633 + SPMLIKE 10989 0.5148 (1533/2978) 0 * Os_TE_548509 Os_TE_548504 Chr2 22856233 22856232 + ORSiTETN00200006 8216 0.0017 (5/2994) 0 * * Os_TE_548465 Chr2 22845735 22845736 - COPI2_LTR 4733 0.0044 (13/2982) 0 * Os_TE_548464 Os_TE_548464 Chr2 22845731 22845730 + COPI2_LTR 4733 0.0040 (12/2972) 0 * Os_TE_548465 Os_TE_548463 Chr2 22845690 22845691 - COPIA2-LTR_OS 6433 0.0007 (2/2979) 0 * Os_TE_548462 Os_TE_548462 Chr2 22845686 22845685 + COPIA2-LTR_OS 6433 0.0007 (2/2979) 0 * Os_TE_548463 Os_TE_548461 Chr2 22845464 22845465 + COPIA2-LTR_OS 6433 0.0034 (10/2974) 0 * Os_TE_548460 Os_TE_548460 Chr2 22845460 22845459 - COPIA2-LTR_OS 6433 0.0040 (12/2979) 0 * Os_TE_548461 Os_TE_548449 Chr2 22834656 22834657 + OSTONOR1_LTR 6440 0.0605 (180/2976) 0 * Os_TE_548448 Os_TE_548448 Chr2 22834652 22834651 - ORSiTERT00100062 5674 0.0630 (188/2983) 0 * Os_TE_548449 Os_TE_548447 Chr2 22834128 22834129 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_548446 Os_TE_548446 Chr2 22834124 22834123 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_548447 Os_TE_548419 Chr2 22827123 22827124 - MPING 430 0.0007 (2/2996) 0 * Os_TE_548418 Os_TE_548418 Chr2 22827121 22827120 + MPING 430 0.0007 (2/2997) 0 * Os_TE_548419 Os_TE_548398 Chr2 22818856 22818857 + SZ-30_LTR 6377 0.0452 (135/2990) 0 * Os_TE_548397 Os_TE_548397 Chr2 22818852 22818851 - SZ-30_LTR 6377 0.0448 (134/2991) 0 * Os_TE_548398 Os_TE_548396 Chr2 22818750 22818751 + RIREX_LTR 8828 0.0007 (2/2993) 0 * Os_TE_548395 Os_TE_548395 Chr2 22818746 22818745 - RIREX_LTR 8828 0.0007 (2/2998) 0 * Os_TE_548396 Os_TE_548380 Chr2 22814203 22814204 - INDITTO 263 0.0007 (2/2814) 0 * * Os_TE_548350 Chr2 22796117 22796118 + COPIA2-LTR_OS 6433 0.0006 (1/1605) 0 * Os_TE_548349 Os_TE_548349 Chr2 22796113 22796112 - COPIA2-LTR_OS 6433 0.0006 (1/1605) 0 * Os_TE_548350 Os_TE_548346 Chr2 22794704 22794703 + COPIA2-LTR_OS 6433 0.0056 (11/1970) 0 * * Os_TE_548345 Chr2 22794065 22794066 - COPIA2-LTR_OS 6433 0.0017 (3/1756) 0 * Os_TE_548344 Os_TE_548344 Chr2 22794061 22794060 + COPIA2-LTR_OS 6433 0.0017 (3/1760) 0 * Os_TE_548345 Os_TE_548336 Chr2 22792527 22792526 + CACTA-F 1118 0.0004 (1/2321) 0 * * Os_TE_548334 Chr2 22791112 22791113 - ORSgTETN00200001 10994 0.0030 (5/1662) 0 * * Os_TE_548237 Chr2 22746744 22746743 - COPIA2-LTR_OS 6433 0.0003 (1/2971) 0 * * Os_TE_548228 Chr2 22742886 22742885 - CPSC2_LTR 5202 0.0003 (1/2978) 0 * * Os_TE_548202 Chr2 22734400 22734399 - INDITTO 263 0.0007 (2/2904) 0 * * Os_TE_548153 Chr2 22720439 22720438 + SPMLIKE 10989 0.0003 (1/2981) 0 * * Os_TE_548137 Chr2 22715548 22715549 - RIREX_LTR 8828 0.0013 (4/2992) 0 * Os_TE_548136 Os_TE_548136 Chr2 22715544 22715543 + RIREX_LTR 8828 0.0013 (4/2992) 0 * Os_TE_548137 Os_TE_548135 Chr2 22713863 22713862 + TRUNCATOR 2918 0.0003 (1/2934) 0 * Os_TE_548134 Os_TE_548134 Chr2 22713862 22713863 - TRUNCATOR 2918 0.0003 (1/2985) 0 * Os_TE_548135 Os_TE_548114 Chr2 22701262 22701261 - EnSpm-N1_OS 4256 0.0003 (1/2959) 0 * * Os_TE_548105 Chr2 22693086 22693087 + ORSgTEMT01601122 212 0.0004 (1/2684) 0 * * Os_TE_548075 Chr2 22682341 22682340 - TYPEH 309 0.8159 (2407/2950) 0 * * Os_TE_548073 Chr2 22681728 22681727 - ORSiTERTOOT00269 10834 0.0151 (44/2923) 0 * * Os_TE_547997 Chr2 22660762 22656847 + RETROSAT4_LTR 13504 0.3941 (1148/2913) 1 Solo_LTR * Os_TE_547992 Chr2 22656233 22656234 + COPIA2-LTR_OS 6433 0.0141 (41/2916) 0 * * Os_TE_547989 Chr2 22655120 22655119 + COPIA1-LTR_OS 9292 0.0234 (70/2996) 0 * * Os_TE_547987 Chr2 22653524 22653525 + COPIA2-LTR_OS 6433 0.0101 (30/2978) 0 * Os_TE_547986 Os_TE_547986 Chr2 22653520 22653519 - COPIA2-LTR_OS 6433 0.0097 (29/2978) 0 * Os_TE_547987 Os_TE_547984 Chr2 22653430 22653429 - COPI2_LTR 4733 0.0003 (1/2988) 0 * * Os_TE_547977 Chr2 22649969 22649970 + ORSiTERTOOT00226 792 0.0003 (1/2979) 0 * Os_TE_547976 Os_TE_547976 Chr2 22649965 22649964 + ORSiTERTOOT00226 792 0.0003 (1/2979) 0 * Os_TE_547977 Os_TE_547962 Chr2 22644741 22644742 - COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_547961 Os_TE_547961 Chr2 22644737 22644736 + COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_547962 Os_TE_547925 Chr2 22624985 22624984 + MUDRN3_OS 903 0.0009 (1/1104) 0 * * Os_TE_547916 Chr2 22620970 22620971 + RETROSAT4_LTR 13504 0.0202 (60/2973) 0 * Os_TE_547915 Os_TE_547915 Chr2 22620966 22620965 - SZ-35LTR 3853 0.0220 (65/2954) 0 * Os_TE_547916 Os_TE_547884 Chr2 22602180 22602179 + RIREX_LTR 8828 0.6631 (1988/2998) 0 * * Os_TE_547859 Chr2 22586064 22586065 - GYPSY-A_LTR 8951 0.0227 (65/2860) 0 * * Os_TE_547850 Chr2 22583440 22583439 + MDR2 6967 0.0003 (1/2973) 0 * * Os_TE_547833 Chr2 22579798 22579799 - AMYLTP 383 0.0198 (59/2974) 0 * Os_TE_547832 Os_TE_547832 Chr2 22579790 22579789 + AMYLTP 383 0.0215 (60/2795) 0 * Os_TE_547833 Os_TE_547808 Chr2 22569041 22569042 + STOWAWAY48_OS 261 0.0663 (197/2971) 0 * * Os_TE_547801 Chr2 22567956 22567955 + ORSgTEMT01601122 212 0.0661 (189/2858) 0 * Os_TE_547800 Os_TE_547800 Chr2 22567955 22567956 + STOWAWAY21_OS 243 0.0509 (143/2811) 0 * Os_TE_547801 Os_TE_547785 Chr2 22560678 22560679 + ORSgTETNOOT01930 140 0.0701 (210/2995) 0 * * Os_TE_547783 Chr2 22559884 22559885 + INDITTO 263 0.0017 (5/2994) 0 * Os_TE_547782 Os_TE_547782 Chr2 22559882 22559881 - INDITTO 263 0.0017 (5/2996) 0 * Os_TE_547783 Os_TE_547781 Chr2 22559858 22559859 + MPING 430 0.0007 (2/2997) 0 * Os_TE_547780 Os_TE_547780 Chr2 22559856 22559855 - MPING 430 0.0007 (2/2998) 0 * Os_TE_547781 Os_TE_547771 Chr2 22556540 22556539 + ORSgTEMT01701663 106 0.0022 (5/2287) 0 * Os_TE_547770 Os_TE_547770 Chr2 22556537 22556538 - ORSgTEMT01700507 154 0.0019 (5/2655) 0 * Os_TE_547771 Os_TE_547769 Chr2 22556455 22556456 - RIREX_LTR 8828 0.0009 (1/1117) 0 * Os_TE_547768 Os_TE_547768 Chr2 22556451 22556450 + RIREX_LTR 8828 0.0004 (1/2768) 0 * Os_TE_547769 Os_TE_547767 Chr2 22556439 22556438 - ORSgTEMT00500512 153 0.6043 (1668/2760) 0 * * Os_TE_547764 Chr2 22555530 22555531 + ORSgTEMT01601122 212 0.0017 (5/2974) 0 * * Os_TE_547754 Chr2 22553093 22553321 + ORSgTEMT01602669 216 0.3661 (1081/2953) 1 Intact * Os_TE_547753 Chr2 22552870 22552871 + ORSgTEMT00500498 155 0.6441 (1904/2956) 0 * * Os_TE_547742 Chr2 22550588 22550589 - COPIA2-LTR_OS 6433 0.0104 (12/1151) 0 * Os_TE_547741 Os_TE_547741 Chr2 22550584 22550583 + COPIA2-LTR_OS 6433 0.0078 (9/1151) 0 * Os_TE_547742 Os_TE_547727 Chr2 22546902 22546640 + INDITTO 263 0.8823 (1012/1147) 1 Intact * Os_TE_547719 Chr2 22545906 22546008 + TREP219 104 0.4057 (1134/2795) 1 Intact * Os_TE_547704 Chr2 22537874 22536273 - MERMITED 1572 0.3699 (1085/2933) 1 Intact Os_TE_547703 Os_TE_547703 Chr2 22536273 22537873 + MERMITED 1572 0.3587 (1071/2986) 1 Intact Os_TE_547704 Os_TE_547702 Chr2 22536183 22536182 + MERMITEB 1610 0.6567 (1957/2980) 0 * * Os_TE_547700 Chr2 22536141 22534507 + MERMITE18E 1528 0.7455 (1072/1438) 1 Intact * Os_TE_547673 Chr2 22528922 22528921 + ORSgTEMT01602119 229 0.5743 (1450/2525) 0 * Os_TE_547672 Os_TE_547672 Chr2 22528919 22528920 + ORSgTEMT01602669 216 0.1356 (175/1291) 0 * Os_TE_547673 Os_TE_547670 Chr2 22528620 22528619 + RIREX_LTR 8828 0.0009 (1/1118) 0 * * Os_TE_547665 Chr2 22526436 22526437 + OSTONOR1_LTR 6440 0.0009 (1/1125) 0 * Os_TE_547664 Os_TE_547664 Chr2 22526432 22526431 - OSTONOR1_LTR 6440 0.0009 (1/1148) 0 * Os_TE_547665 Os_TE_547635 Chr2 22518287 22518288 - SZ-35LTR 3853 0.0588 (146/2485) 0 * * Os_TE_547632 Chr2 22516128 22516129 - RETROSAT5_LTR 13878 0.4014 (814/2028) 0 * * Os_TE_547629 Chr2 22515711 22515712 - F569 228 0.0004 (1/2622) 0 * Os_TE_547628 Os_TE_547628 Chr2 22515709 22515708 + F569 228 0.0009 (1/1090) 0 * Os_TE_547629 Os_TE_547621 Chr2 22514433 22514434 + KIDDOC 275 0.0009 (1/1113) 0 * Os_TE_547620 Os_TE_547620 Chr2 22514429 22514428 - KIDDOC 275 0.0009 (1/1054) 0 * Os_TE_547621 Os_TE_547612 Chr2 22512922 22513086 + EXPLORER 210 0.7912 (1099/1389) 1 Intact * Os_TE_547591 Chr2 22504751 22504752 + RIREX_LTR 8828 0.0004 (1/2773) 0 * Os_TE_547590 Os_TE_547590 Chr2 22504747 22504746 - RIREX_LTR 8828 0.0004 (1/2781) 0 * Os_TE_547591 Os_TE_547588 Chr2 22504534 22504533 + RIREX_LTR 8828 0.0291 (81/2782) 0 * * Os_TE_547584 Chr2 22503495 22503496 + ORSgTEMT00300063 413 0.1363 (372/2729) 0 * * Os_TE_547565 Chr2 22485631 22485632 + CACTA-H 1152 0.0038 (11/2886) 0 * Os_TE_547564 Os_TE_547564 Chr2 22485629 22485628 - ORSgTETN00200001 10994 0.0035 (10/2887) 0 * Os_TE_547565 Os_TE_547563 Chr2 22485161 22485162 + RIREX_LTR 8828 0.0020 (6/2977) 0 * Os_TE_547562 Os_TE_547562 Chr2 22485157 22485156 - RIREX_LTR 8828 0.0020 (6/2982) 0 * Os_TE_547563 Os_TE_547560 Chr2 22484379 22484378 + ORSgTEMT01602004 234 0.0038 (11/2916) 0 * Os_TE_547559 Os_TE_547559 Chr2 22484376 22484377 - ORSgTEMT01602413 239 0.0031 (9/2896) 0 * Os_TE_547560 Os_TE_547558 Chr2 22484008 22484009 + RETROSAT4_LTR 13504 0.0270 (79/2921) 0 * * Os_TE_547554 Chr2 22483723 22483724 - TRUNCATOR 2918 0.0034 (10/2908) 0 * * Os_TE_547553 Chr2 22483577 22483576 + ORSgTEMT00502437 145 0.0034 (10/2951) 0 * * Os_TE_547541 Chr2 22479708 22479709 + HARB-1_OS 5166 0.0270 (80/2960) 0 * Os_TE_547540 Os_TE_547540 Chr2 22479706 22479705 - HARB-1_OS 5166 0.0280 (83/2960) 0 * Os_TE_547541 Os_TE_547528 Chr2 22477629 22477628 + ORSgTEMT01601591 242 0.0040 (12/2974) 0 * * Os_TE_547527 Chr2 22477623 22477624 + STOWAWAY51_OS 246 0.0038 (11/2898) 0 * Os_TE_547526 Os_TE_547526 Chr2 22477614 22477613 + ORSgTEMT00300044 390 0.0264 (78/2950) 0 * Os_TE_547527 Os_TE_547521 Chr2 22474212 22474213 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * * Os_TE_547512 Chr2 22469837 22469838 + STOWAWAY18_OS 216 0.0260 (74/2849) 0 * * Os_TE_547497 Chr2 22464585 22463577 + RPO_OS 1983 0.3577 (1042/2913) 1 Intact * Os_TE_547495 Chr2 22463336 22462982 - ORSgTEMT00600085 364 0.3778 (1019/2697) 1 Intact Os_TE_547493 Os_TE_547493 Chr2 22462982 22463336 - ORSgTEMT00600484 344 0.3530 (1021/2892) 1 Intact Os_TE_547495 Os_TE_547492 Chr2 22461020 22461021 - SC-3_LTR 5748 0.5238 (1495/2854) 0 * * Os_TE_547479 Chr2 22453427 22453179 - ORSgTEMT01400019 216 0.4212 (1254/2977) 1 Intact * Os_TE_547467 Chr2 22449415 22449593 - F118 179 0.4973 (1299/2612) 1 Intact * Os_TE_547447 Chr2 22431258 22431259 + ORSgTETNOOT02316 263 0.0003 (1/2964) 0 * Os_TE_547446 Os_TE_547446 Chr2 22431256 22431255 - INDITTO 263 0.0003 (1/2959) 0 * Os_TE_547447 Os_TE_547445 Chr2 22430790 22430791 - COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_547444 Os_TE_547444 Chr2 22430786 22430785 + COPI2_LTR 4733 0.0003 (1/2993) 0 * Os_TE_547445 Os_TE_547424 Chr2 22413719 22413720 - COPIA2-LTR_OS 6433 0.0014 (4/2947) 0 * Os_TE_547423 Os_TE_547423 Chr2 22413715 22413714 + COPIA2-LTR_OS 6433 0.0014 (4/2961) 0 * Os_TE_547424 Os_TE_547421 Chr2 22412813 22412467 + NDNA2TNA_OS 346 0.3316 (974/2937) 1 Intact Os_TE_547418 Os_TE_547418 Chr2 22412466 22412812 - NDNA2TNA_OS 346 0.3255 (953/2928) 1 Intact Os_TE_547421 Os_TE_547416 Chr2 22412296 22412297 + TWIF 586 0.0003 (1/2933) 0 * * Os_TE_547387 Chr2 22396340 22396341 + COPIA2-LTR_OS 6433 0.0491 (147/2993) 0 * * Os_TE_547317 Chr2 22363706 22363707 - OLO24 345 0.0003 (1/2989) 0 * Os_TE_547316 Os_TE_547316 Chr2 22363704 22363703 + OLO24 345 0.0003 (1/2989) 0 * Os_TE_547317 Os_TE_547305 Chr2 22355450 22355449 + TRSA_OS 353 0.0010 (1/978) 0 * * Os_TE_547303 Chr2 22354485 22354486 - COPIA2-LTR_OS 6433 0.0043 (13/2990) 0 * Os_TE_547302 Os_TE_547302 Chr2 22354481 22354480 + COPIA2-LTR_OS 6433 0.0040 (12/2985) 0 * Os_TE_547303 Os_TE_547294 Chr2 22348713 22348712 + ORSgTEMT01600227 232 0.0017 (5/2992) 0 * * Os_TE_547292 Chr2 22348663 22348664 + ORSiTERTOOT00034 791 0.0010 (3/2991) 0 * Os_TE_547291 Os_TE_547291 Chr2 22348659 22348658 + ORSiTERTOOT00034 791 0.0007 (2/2994) 0 * Os_TE_547292 Os_TE_547282 Chr2 22345925 22345687 + ORSgTEMT01602181 239 0.0405 (121/2991) 1 Intact Os_TE_547280 Os_TE_547280 Chr2 22345687 22345925 + ORSgTEMT01602181 239 0.0414 (124/2996) 1 Intact Os_TE_547282 Os_TE_547278 Chr2 22344850 22344849 + STOWAWAY44_OS 240 0.0017 (5/2970) 0 * * Os_TE_547266 Chr2 22341700 22342494 - MUDRN1_OS 764 0.3379 (991/2933) 1 Intact * Os_TE_547255 Chr2 22333285 22333284 + STOWAWAY51_OS 246 0.0003 (1/2958) 0 * Os_TE_547254 Os_TE_547254 Chr2 22333279 22333280 - STOWAWAY51_OS 246 0.0003 (1/2965) 0 * Os_TE_547255 Os_TE_547246 Chr2 22329970 22329969 - SC-3_LTR 5748 0.0003 (1/2987) 0 * * Os_TE_547232 Chr2 22324685 22324686 - TYPEM 227 0.0067 (19/2826) 0 * * Os_TE_547213 Chr2 22319051 22319052 + STOWAWAY51_OS 246 0.0254 (75/2955) 0 * * Os_TE_547175 Chr2 22310974 22310975 + SZ-62LTR 3649 0.0211 (63/2985) 0 * * Os_TE_547145 Chr2 22297114 22297115 + ORSgTEMT01601591 242 0.0003 (1/2953) 0 * * Os_TE_547143 Chr2 22293569 22289584 + RETROSAT4_LTR 13504 0.3067 (885/2886) 1 Solo_LTR Os_TE_547141 Os_TE_547141 Chr2 22289588 22293570 - RETROSAT4_LTR 13504 0.3379 (1007/2980) 1 Solo_LTR Os_TE_547143 Os_TE_547133 Chr2 22286820 22286821 - RETRO2_LTR 12874 0.0017 (5/2990) 0 * Os_TE_547132 Os_TE_547132 Chr2 22286816 22286815 + RETRO2_LTR 12874 0.0017 (5/2988) 0 * Os_TE_547133 Os_TE_547125 Chr2 22283470 22283471 + COPIA2-LTR_OS 6433 0.0237 (71/2994) 0 * Os_TE_547124 Os_TE_547124 Chr2 22283466 22283465 - COPIA2-LTR_OS 6433 0.0247 (74/2997) 0 * Os_TE_547125 Os_TE_547112 Chr2 22273638 22273639 + HELITRON7_OS 10153 0.0032 (5/1546) 0 * * Os_TE_547111 Chr2 22273612 22273611 - HELITRON7_OS 10153 0.0025 (4/1593) 0 * * Os_TE_547096 Chr2 22265636 22265637 + COPIA2-LTR_OS 6433 0.0007 (2/2993) 0 * Os_TE_547095 Os_TE_547095 Chr2 22265632 22265631 - COPIA2-LTR_OS 6433 0.0007 (2/2994) 0 * Os_TE_547096 Os_TE_547094 Chr2 22265264 22265263 - STOWAWAY51_OS 246 0.0003 (1/2989) 0 * * Os_TE_547089 Chr2 22262303 22262302 + ORSgTEMT01602181 239 0.0003 (1/2933) 0 * * Os_TE_547088 Chr2 22262206 22262205 - TYPEM 227 0.0188 (55/2927) 0 * Os_TE_547087 Os_TE_547087 Chr2 22262205 22262206 - ORSgTEMT02400246 177 0.0197 (58/2939) 0 * Os_TE_547088 Os_TE_547086 Chr2 22261466 22261465 + ORSgTEMT01602181 239 0.0187 (56/2988) 0 * * Os_TE_547085 Chr2 22261266 22261265 - ORSgTEMT01601432 239 0.2360 (702/2975) 0 * Os_TE_547084 Os_TE_547084 Chr2 22261263 22261264 + ORSgTEMT01602181 239 0.2328 (692/2972) 0 * Os_TE_547085 Os_TE_547080 Chr2 22257452 22257451 + STOWAWAY51_OS 246 0.0017 (5/2989) 0 * Os_TE_547079 Os_TE_547079 Chr2 22257446 22257447 + ORSgTEMT01601591 242 0.0017 (5/2991) 0 * Os_TE_547080 Os_TE_547077 Chr2 22256793 22256530 - ORSgTEMT01601493 303 0.3229 (963/2982) 1 Intact Os_TE_547076 Os_TE_547076 Chr2 22256530 22256793 + ORSgTEMT01601983 238 0.3204 (952/2971) 1 Intact Os_TE_547077 Os_TE_546997 Chr2 22230596 22230595 + CRM-LTR_OS 7749 0.0003 (1/2988) 0 * * Os_TE_546987 Chr2 22225692 22225693 - NDNA1TNA_OS 334 0.0019 (5/2686) -1 * * Os_TE_546967 Chr2 22222783 22222784 + MPING 430 0.0058 (17/2948) 0 * Os_TE_546966 Os_TE_546966 Chr2 22222781 22222780 - MPING 430 0.0054 (16/2949) 0 * Os_TE_546967 Os_TE_546938 Chr2 22215027 22215028 + ORSgTEMT00300069 394 0.2168 (648/2989) 0 * Os_TE_546937 Os_TE_546937 Chr2 22215022 22215021 + ORSgTEMT00300064 397 0.2186 (653/2987) 0 * Os_TE_546938 Os_TE_546928 Chr2 22213936 22214278 + ORSgTEMT00100531 325 0.4737 (1405/2966) 1 Intact * Os_TE_546919 Chr2 22206882 22206883 - ORSiTETNOOT00216 3569 0.0586 (60/1024) 0 * * Os_TE_546915 Chr2 22205582 22205583 + ORSgTETNOOT01531 255 0.3404 (482/1416) 0 * Os_TE_546914 Os_TE_546914 Chr2 22205580 22205579 + ORSgTETNOOT01834 251 0.3493 (497/1423) 0 * Os_TE_546915 Os_TE_546908 Chr2 22204969 22205431 - DITAILA 257 0.5694 (1284/2255) -1 Intact * Os_TE_546906 Chr2 22204564 22204363 + COWARD-3 221 0.4706 (1361/2892) 1 Intact * Os_TE_546900 Chr2 22201291 22201290 + STOWAWAY51_OS 246 0.0015 (4/2585) 0 * * Os_TE_546877 Chr2 22182747 22185806 + RETROSAT2LTRA 3112 0.2862 (848/2963) 1 Intact * Os_TE_546869 Chr2 22179134 22179135 - TRUNCATOR2_LTR 2904 0.0003 (1/2996) 0 * Os_TE_546868 Os_TE_546868 Chr2 22179130 22179129 + ORSiCMCM00100019 2717 0.0003 (1/2994) 0 * Os_TE_546869 Os_TE_546847 Chr2 22170664 22170914 + ORSgTETNOOT01834 251 0.5438 (1497/2753) 1 Intact * Os_TE_546844 Chr2 22168829 22168828 - MuDR3_OS 8604 0.5280 (1525/2888) 0 * * Os_TE_546841 Chr2 22168596 22168816 - ORSgTEMT01600032 240 0.4065 (1022/2514) 1 Intact * Os_TE_546838 Chr2 22168390 22168389 - ORSgTEMT00900075 250 0.5224 (1561/2988) 0 * * Os_TE_546833 Chr2 22167764 22167975 - ORSgTETNOOT01910 200 0.5075 (1491/2938) 1 Intact * Os_TE_546828 Chr2 22162980 22162981 - ORSgTERT00201216 11284 0.1623 (480/2957) 0 * Os_TE_546827 Os_TE_546827 Chr2 22162976 22162975 - RIRE2_LTR 11306 0.1599 (468/2926) 0 * Os_TE_546828 Os_TE_546821 Chr2 22159453 22159454 + SZ-9LTR 965 0.2420 (723/2988) 0 * Os_TE_546820 Os_TE_546820 Chr2 22159449 22159448 - SZ-9LTR 965 0.2417 (710/2937) 0 * Os_TE_546821 Os_TE_546800 Chr2 22144627 22144628 - MPING 430 0.0003 (1/2999) 0 * Os_TE_546799 Os_TE_546799 Chr2 22144625 22144624 + MPING 430 0.0003 (1/2997) 0 * Os_TE_546800 Os_TE_546793 Chr2 22138560 22138561 + ORSiTERTOOT00226 792 0.0802 (240/2991) 0 * Os_TE_546792 Os_TE_546792 Chr2 22138556 22138555 - SZ-22_LTR 4403 0.0780 (233/2988) 0 * Os_TE_546793 Os_TE_546785 Chr2 22135289 22135290 + ORSgTETNOOT01834 251 0.0007 (2/2990) 0 * * Os_TE_546733 Chr2 22118006 22118005 + STOWAWAY51_OS 246 0.0003 (1/2968) 0 * Os_TE_546732 Os_TE_546732 Chr2 22118000 22118001 + ORSgTEMT01601591 242 0.0003 (1/2973) 0 * Os_TE_546733 Os_TE_546724 Chr2 22112567 22112568 + COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_546723 Os_TE_546723 Chr2 22112563 22112562 - COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_546724 Os_TE_546693 Chr2 22097242 22097243 + HARB-1_OS 5166 0.0003 (1/2999) 0 * Os_TE_546692 Os_TE_546692 Chr2 22097240 22097239 - HARB-1_OS 5166 0.0003 (1/2994) 0 * Os_TE_546693 Os_TE_546688 Chr2 22095148 22095149 + SZ-48LTR 3632 0.0017 (5/2991) 0 * * Os_TE_546676 Chr2 22091757 22091758 + HATOS1 3488 0.0017 (5/2947) 0 * * Os_TE_546666 Chr2 22087132 22087133 - COPIA2-LTR_OS 6433 0.0003 (1/2929) 0 * Os_TE_546665 Os_TE_546665 Chr2 22087128 22087127 + COPIA2-LTR_OS 6433 0.0003 (1/2931) 0 * Os_TE_546666 Os_TE_546663 Chr2 22085516 22085517 + MPING 430 0.0007 (2/2989) 0 * Os_TE_546662 Os_TE_546662 Chr2 22085514 22085513 - MPING 430 0.0007 (2/2988) 0 * Os_TE_546663 Os_TE_546646 Chr2 22077221 22077222 + CASTAWAY-3 314 0.0013 (4/2976) 0 * * Os_TE_546644 Chr2 22077064 22077065 + F770 284 0.2346 (701/2988) 0 * Os_TE_546643 Os_TE_546643 Chr2 22077062 22077061 - F770 284 0.2343 (700/2987) 0 * Os_TE_546644 Os_TE_546631 Chr2 22071398 22071397 - OSTE20 496 0.4031 (1073/2662) 0 * * Os_TE_546614 Chr2 22065627 22065628 + MPING 430 0.0007 (2/2972) 0 * Os_TE_546613 Os_TE_546613 Chr2 22065625 22065624 - MPING 430 0.0007 (2/2975) 0 * Os_TE_546614 Os_TE_546595 Chr2 22054386 22054387 - COPI2_LTR 4733 0.0007 (2/2985) 0 * Os_TE_546594 Os_TE_546594 Chr2 22054382 22054381 + COPI2_LTR 4733 0.0007 (2/2984) 0 * Os_TE_546595 Os_TE_546564 Chr2 22042212 22042213 - ORSiTETNOOT00134 607 0.0067 (20/2996) 0 * Os_TE_546563 Os_TE_546563 Chr2 22042205 22042204 + TWIF 586 0.0053 (16/2992) 0 * Os_TE_546564 Os_TE_546560 Chr2 22041135 22041136 - ORSgTEMT01601020 233 0.0231 (69/2983) 0 * * Os_TE_546558 Chr2 22038485 22038247 - ORSgTEMT01400022 212 0.3363 (1005/2988) 1 Intact Os_TE_546554 Os_TE_546554 Chr2 22038247 22038451 - ORSgTEMT01400038 210 0.3422 (1008/2946) 1 Intact Os_TE_546558 Os_TE_546533 Chr2 22023626 22023625 + ORSgTEMT06100005 261 0.0130 (12/924) 0 * * Os_TE_546516 Chr2 22017503 22017504 - HARB-1_OS 5166 0.0003 (1/2988) 0 * Os_TE_546515 Os_TE_546515 Chr2 22017501 22017500 + HARB-1_OS 5166 0.0004 (1/2855) 0 * Os_TE_546516 Os_TE_546498 Chr2 22006530 22006529 + RETROSAT4_LTR 13504 0.0004 (1/2680) -1 * * Os_TE_546497 Chr2 22006505 22006506 + ORSgTETNOOT01930 140 0.0192 (52/2703) 0 * * Os_TE_546488 Chr2 22003755 22003756 + ORSgTEMT01602119 229 0.0004 (1/2832) 0 * * Os_TE_546483 Chr2 22000661 22000660 + INDITTO 263 0.0003 (1/2995) 0 * * Os_TE_546470 Chr2 21992687 21992686 - GLUTEL1LIKE 273 0.0013 (4/2993) 0 * * Os_TE_546467 Chr2 21984596 21984597 + SC-8_LTR 4951 0.0003 (1/2986) 0 * Os_TE_546466 Os_TE_546466 Chr2 21984592 21984591 - SC-8_LTR 4951 0.0003 (1/2985) 0 * Os_TE_546467 Os_TE_546462 Chr2 21983100 21983101 - SC-8_LTR 4951 0.0003 (1/2991) 0 * Os_TE_546461 Os_TE_546461 Chr2 21983096 21983095 + SC-8_LTR 4951 0.0003 (1/2990) 0 * Os_TE_546462 Os_TE_546412 Chr2 21969184 21969183 + OSCOPIA2_LTR 5476 0.0023 (7/2986) 0 * * Os_TE_546397 Chr2 21962226 21962227 - MPING 430 0.0005 (1/1915) 0 * Os_TE_546396 Os_TE_546396 Chr2 21962224 21962223 + MPING 430 0.0006 (1/1615) 0 * Os_TE_546397 Os_TE_546394 Chr2 21961044 21961043 + TRUNCATOR 2918 0.2739 (821/2997) 0 * Os_TE_546393 Os_TE_546393 Chr2 21961043 21961044 - TRUNCATOR 2918 0.2702 (809/2994) 0 * Os_TE_546394 Os_TE_546390 Chr2 21958363 21958364 - rn_179-105_LTR 4837 0.0003 (1/2995) 0 * * Os_TE_546385 Chr2 21952064 21952065 - NDNA1TNA_OS 334 0.0249 (73/2935) 0 * Os_TE_546384 Os_TE_546384 Chr2 21952062 21952061 + NDNA1TNA_OS 334 0.0251 (75/2994) 0 * Os_TE_546385 Os_TE_546360 Chr2 21943280 21943279 - TRUNCATOR 2918 0.0193 (56/2905) 0 * * Os_TE_546324 Chr2 21935543 21935544 + MPING 430 0.0031 (9/2944) 0 * Os_TE_546323 Os_TE_546323 Chr2 21935541 21935540 - MPING 430 0.0034 (10/2964) 0 * Os_TE_546324 Os_TE_546310 Chr2 21927326 21927064 + INDITTO 263 0.0603 (179/2969) 1 Intact Os_TE_546308 Os_TE_546308 Chr2 21927064 21927326 - INDITTO 263 0.0815 (188/2307) 1 Intact Os_TE_546310 Os_TE_546306 Chr2 21927035 21926756 + KIDDOD 279 0.0760 (186/2448) 1 Intact Os_TE_546305 Os_TE_546305 Chr2 21926756 21927035 - KIDDOD 279 0.0607 (181/2984) 1 Intact Os_TE_546306 Os_TE_546290 Chr2 21918994 21918995 + ORSgTETNOOT00032 218 0.3023 (892/2951) 0 * * Os_TE_546266 Chr2 21902140 21902141 + ORSgTEMT05000092 279 0.0014 (4/2874) 0 * * Os_TE_546249 Chr2 21899328 21899327 - AMYLTP 383 0.0003 (1/2996) 0 * * Os_TE_546247 Chr2 21898362 21898361 + ORSgTETNOOT00908 242 0.1999 (514/2571) -1 * * Os_TE_546236 Chr2 21892759 21892760 - OSTE33 1012 0.6730 (1879/2792) 0 * Os_TE_546235 Os_TE_546235 Chr2 21892750 21892749 - OSTE33 1012 0.6902 (2012/2915) 0 * Os_TE_546236 Os_TE_546135 Chr2 21852360 21852359 + KRISPIE 956 0.2426 (727/2997) 0 * Os_TE_546134 Os_TE_546134 Chr2 21852359 21852360 - KRISPIE 956 0.2411 (722/2995) 0 * Os_TE_546135 Os_TE_546127 Chr2 21846809 21846810 + ORSgTEMT00502327 143 0.2482 (729/2937) 0 * * Os_TE_546074 Chr2 21834835 21834836 + ORSiTERTOOT00004 4000 0.0003 (1/2918) 0 * * Os_TE_546054 Chr2 21828077 21828078 + SPMLIKE 10989 0.0091 (27/2980) 0 * * Os_TE_546051 Chr2 21827189 21827190 - RIREX_LTR 8828 0.0003 (1/2928) 0 * Os_TE_546050 Os_TE_546050 Chr2 21827185 21827184 + RIREX_LTR 8828 0.0003 (1/2920) 0 * Os_TE_546051 Os_TE_546048 Chr2 21825649 21825650 + ORSgTERTOOT00009 12852 0.0017 (5/2988) 0 * * Os_TE_546045 Chr2 21824901 21824900 - TRUNCATOR 2918 0.0091 (26/2868) 0 * Os_TE_546044 Os_TE_546044 Chr2 21824900 21824901 + TRUNCATOR 2918 0.0101 (29/2875) 0 * Os_TE_546045 Os_TE_546041 Chr2 21824688 21824689 - ORSgTEMT00400006 152 0.0019 (3/1552) 0 * * Os_TE_546022 Chr2 21820252 21820253 + ORSgTEMT01602665 238 0.0004 (1/2730) 0 * * Os_TE_545999 Chr2 21813489 21813490 - COPIA2-LTR_OS 6433 0.0010 (3/2987) 0 * Os_TE_545998 Os_TE_545998 Chr2 21813485 21813484 + COPIA2-LTR_OS 6433 0.0007 (2/2986) 0 * Os_TE_545999 Os_TE_545979 Chr2 21792951 21806960 - SZ-48LTR 3632 0.7629 (2269/2974) 1 Intact * Os_TE_545963 Chr2 21787741 21787978 + ORSgTEMT01602181 239 0.3415 (707/2070) 1 Intact * Os_TE_545944 Chr2 21778919 21778918 + SPMLIKE 10989 0.0017 (5/2995) 0 * * Os_TE_545923 Chr2 21770794 21770795 + ORSgTEMT00501027 149 0.0013 (4/2977) 0 * * Os_TE_545913 Chr2 21765634 21765635 + ORSgTEMT01601122 212 0.0004 (1/2843) 0 * * Os_TE_545885 Chr2 21756761 21756760 + RIRE3_LTR 12054 0.0218 (65/2986) 0 * * Os_TE_545882 Chr2 21753817 21753816 - STOWAWAY14_OS 258 0.0013 (4/2992) 0 * * Os_TE_545853 Chr2 21742838 21742837 - RIREX_LTR 8828 0.0017 (5/2997) 0 * * Os_TE_545847 Chr2 21739976 21739977 + COPIA2-LTR_OS 6433 0.0027 (4/1502) 0 * * Os_TE_545829 Chr2 21719573 21733191 + RETROSAT4_LTR 13504 0.3004 (857/2853) 1 Intact * Os_TE_545824 Chr2 21718200 21718199 + STOWAWAY44_OS 240 0.0010 (3/2920) 0 * * Os_TE_545792 Chr2 21701086 21697309 + RETROSAT4_LTR 13504 0.3150 (933/2962) 1 Solo_LTR Os_TE_545786 Os_TE_545786 Chr2 21697307 21701086 - SZ-35LTR 3853 0.3222 (949/2945) 1 Intact Os_TE_545792 Os_TE_545777 Chr2 21693474 21693473 - SZ-5LTR 1223 0.2003 (593/2961) 0 * * Os_TE_545772 Chr2 21688630 21688631 - AMYLTP 383 0.0221 (66/2991) 0 * Os_TE_545771 Os_TE_545771 Chr2 21688622 21688621 + AMYLTP 383 0.0217 (65/2991) 0 * Os_TE_545772 Os_TE_545770 Chr2 21687944 21684075 + RETROSAT4_LTR 13504 0.3071 (902/2937) 1 Solo_LTR Os_TE_545767 Os_TE_545767 Chr2 21684075 21687944 - SZ-35LTR 3853 0.3183 (950/2985) 1 Intact Os_TE_545770 Os_TE_545766 Chr2 21683925 21683926 - COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_545765 Os_TE_545765 Chr2 21683921 21683920 + COPIA2-LTR_OS 6433 0.0003 (1/2884) 0 * Os_TE_545766 Os_TE_545731 Chr2 21669792 21678191 - GYPSY1-LTR_OS 8900 0.6342 (983/1550) 1 Intact * Os_TE_545729 Chr2 21669443 21669442 - SZ-48LTR 3632 0.5007 (1492/2980) 0 * * Os_TE_545726 Chr2 21668372 21668371 - ORSgTEMT00501204 149 0.6867 (2021/2943) 0 * * Os_TE_545710 Chr2 21662182 21662181 - ORSgTEMT00101174 225 0.6781 (1858/2740) 0 * * Os_TE_545676 Chr2 21650327 21650328 - ORSiTERTOOT00385 6000 0.7046 (2080/2952) 0 * * Os_TE_545675 Chr2 21650321 21653336 - TRUNCATOR 2918 0.3130 (925/2955) 1 Intact * Os_TE_545673 Chr2 21650260 21650259 - RETRO1_LTR 8314 0.6657 (1971/2961) 0 * * Os_TE_545644 Chr2 21639119 21627634 + CACTA-B 1103 0.3162 (946/2992) 1 Intact Os_TE_545638 Os_TE_545638 Chr2 21627634 21639116 - ORSgTETN00200001 10994 0.3131 (927/2961) 1 Intact Os_TE_545644 Os_TE_545633 Chr2 21626412 21626413 - MERMITE18B 1306 0.0017 (5/2990) 0 * Os_TE_545632 Os_TE_545632 Chr2 21626406 21626405 + MERMITEB 1610 0.0007 (2/2990) 0 * Os_TE_545633 Os_TE_545626 Chr2 21624878 21624879 + COPI2_LTR 4733 0.0003 (1/2956) 0 * * Os_TE_545603 Chr2 21617565 21617566 - MPING 430 0.0003 (1/2979) 0 * Os_TE_545602 Os_TE_545602 Chr2 21617563 21617562 + MPING 430 0.0003 (1/2981) 0 * Os_TE_545603 Os_TE_545597 Chr2 21615130 21615129 + ORSgTEMT01601591 242 0.0067 (20/2997) 0 * Os_TE_545596 Os_TE_545596 Chr2 21615124 21615125 + STOWAWAY51_OS 246 0.0067 (20/2995) 0 * Os_TE_545597 Os_TE_545565 Chr2 21603716 21603717 + OSTE33 1012 0.0162 (46/2845) 0 * Os_TE_545564 Os_TE_545564 Chr2 21603707 21603706 + OSTE33 1012 0.0172 (49/2846) 0 * Os_TE_545565 Os_TE_545555 Chr2 21597544 21597545 + ORSiTERTOOT00296 5553 0.0003 (1/2993) 0 * Os_TE_545554 Os_TE_545554 Chr2 21597540 21597539 - SC-3_LTR 5748 0.0003 (1/2987) 0 * Os_TE_545555 Os_TE_545532 Chr2 21590728 21590729 - MPING 430 0.0025 (7/2774) 0 * Os_TE_545531 Os_TE_545531 Chr2 21590726 21590725 + MPING 430 0.0022 (6/2775) 0 * Os_TE_545532 Os_TE_545518 Chr2 21589325 21589326 + RETRO2_LTR 12874 0.0796 (236/2963) 0 * Os_TE_545517 Os_TE_545517 Chr2 21589321 21589320 - RETRO2_LTR 12874 0.0806 (239/2964) 0 * Os_TE_545518 Os_TE_545467 Chr2 21574225 21574226 - MPING 430 0.0007 (2/2941) 0 * Os_TE_545466 Os_TE_545466 Chr2 21574223 21574222 + MPING 430 0.0007 (2/2950) 0 * Os_TE_545467 Os_TE_545421 Chr2 21557362 21557361 + ORSgTEMT01601591 242 0.0003 (1/2989) 0 * Os_TE_545420 Os_TE_545420 Chr2 21557356 21557357 + STOWAWAY51_OS 246 0.0003 (1/2991) 0 * Os_TE_545421 Os_TE_545419 Chr2 21555486 21555487 + ORSgTEMT01701965 154 0.0024 (7/2942) 0 * * Os_TE_545408 Chr2 21546980 21546979 - STOWAWAY44_OS 240 0.0448 (22/491) -1 * * Os_TE_545402 Chr2 21543368 21543367 - ORSgTEMT00502337 144 0.0003 (1/2861) 0 * * Os_TE_545366 Chr2 21529714 21529715 + STOWAWAY51_OS 246 0.0013 (4/2986) 0 * * Os_TE_545350 Chr2 21524494 21524495 + COPIA2-LTR_OS 6433 0.0004 (1/2808) 0 * * Os_TE_545341 Chr2 21521254 21521255 + TRUNCATOR 2918 0.0013 (4/2999) 0 * * Os_TE_545339 Chr2 21519939 21519940 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * * Os_TE_545334 Chr2 21517045 21517046 - SC-8_LTR 4951 0.0007 (2/2990) 0 * * Os_TE_545241 Chr2 21471690 21471691 + MERMITE18B 1306 0.0007 (2/2875) 0 * * Os_TE_545230 Chr2 21469598 21469599 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * * Os_TE_545219 Chr2 21460537 21460538 - ORSgTEMT00600524 364 0.6627 (1872/2825) 0 * * Os_TE_545213 Chr2 21458836 21458593 + ORSgTEMT01400024 215 0.3917 (946/2415) 1 Intact Os_TE_545211 Os_TE_545211 Chr2 21458592 21458803 - ORSgTEMT01400022 212 0.3953 (910/2302) 1 Intact Os_TE_545213 Os_TE_545209 Chr2 21458540 21458539 - ORSgTEMT01602637 232 0.6268 (1473/2350) 0 * * Os_TE_545204 Chr2 21457062 21457061 + BUHUI 375 0.0010 (1/958) 0 * * Os_TE_545201 Chr2 21456642 21456514 - ORSgTEMT00501568 147 0.3158 (911/2885) 1 Intact Os_TE_545199 Os_TE_545199 Chr2 21456513 21456642 + ORSgTEMT00501629 149 0.3630 (909/2504) 1 Intact Os_TE_545201 Os_TE_545147 Chr2 21441754 21441753 - COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * * Os_TE_545099 Chr2 21423729 21423730 - MPING 430 0.0003 (1/2979) 0 * * Os_TE_545090 Chr2 21422435 21422436 + TWIF 586 0.0004 (1/2774) 0 * * Os_TE_544947 Chr2 21378315 21378316 - TYPEM 227 0.0004 (1/2720) 0 * * Os_TE_544943 Chr2 21378005 21378250 + STOWAWAY51_OS 246 0.8872 (2415/2722) 1 Intact * Os_TE_544932 Chr2 21377025 21377026 - COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_544931 Os_TE_544931 Chr2 21377021 21377020 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_544932 Os_TE_544902 Chr2 21365976 21365977 + SZ-29LTR 1393 0.0015 (1/668) 0 * * Os_TE_544888 Chr2 21362136 21362137 + HARB-1_OS 5166 0.0004 (1/2796) 0 * Os_TE_544887 Os_TE_544887 Chr2 21362134 21362133 - HARB-1_OS 5166 0.0004 (1/2821) 0 * Os_TE_544888 Os_TE_544874 Chr2 21353093 21359985 + RIREX_LTR 8828 0.0643 (182/2830) 1 Intact * Os_TE_544828 Chr2 21337672 21337673 + SZ-9LTR 965 0.0003 (1/2879) 0 * * Os_TE_544823 Chr2 21334350 21334351 + MPING 430 0.0095 (28/2957) 0 * Os_TE_544822 Os_TE_544822 Chr2 21334348 21334347 - MPING 430 0.0095 (28/2954) 0 * Os_TE_544823 Os_TE_544798 Chr2 21315530 21315531 + SC-8_LTR 4951 0.0003 (1/2996) 0 * Os_TE_544797 Os_TE_544797 Chr2 21315526 21315525 - SC-8_LTR 4951 0.0003 (1/2995) 0 * Os_TE_544798 Os_TE_544793 Chr2 21311709 21311708 + MERMITEJ 1498 0.0003 (1/2930) 0 * * Os_TE_544701 Chr2 21230127 21230128 - NDNA1TNA_OS 334 0.0842 (251/2982) 0 * Os_TE_544700 Os_TE_544700 Chr2 21230125 21230124 + NDNA1TNA_OS 334 0.0835 (249/2982) 0 * Os_TE_544701 Os_TE_544632 Chr2 21200125 21200126 + RIREX_LTR 8828 0.0003 (1/2999) 0 * Os_TE_544631 Os_TE_544631 Chr2 21200121 21200120 - RIREX_LTR 8828 0.0003 (1/2998) 0 * Os_TE_544632 Os_TE_544630 Chr2 21199914 21199915 + COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_544629 Os_TE_544629 Chr2 21199910 21199909 - COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_544630 Os_TE_544604 Chr2 21180952 21180953 - RETROSAT2LTRA 3112 0.0004 (1/2818) 0 * * Os_TE_544597 Chr2 21178120 21178119 - COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * * Os_TE_544548 Chr2 21155161 21155162 + ORSiTERTOOT00296 5553 0.0027 (8/2997) 0 * Os_TE_544547 Os_TE_544547 Chr2 21155157 21155156 - SC-3_LTR 5748 0.0027 (8/2997) 0 * Os_TE_544548 Os_TE_544521 Chr2 21143648 21143647 - STOWAWAY41_OS 264 0.6494 (1732/2667) 0 * * Os_TE_544520 Chr2 21143472 21143473 - F524 291 0.6429 (1671/2599) 0 * * Os_TE_544496 Chr2 21135718 21135719 - SZ-17_LTR 3387 0.0003 (1/2981) 0 * * Os_TE_544468 Chr2 21124387 21124388 - SC-8_LTR 4951 0.0003 (1/2996) 0 * Os_TE_544467 Os_TE_544467 Chr2 21124383 21124382 + SC-8_LTR 4951 0.0003 (1/2995) 0 * Os_TE_544468 Os_TE_544461 Chr2 21118853 21118854 + OSTE33 1012 0.0003 (1/2988) 0 * * Os_TE_544409 Chr2 21094356 21094357 - RETROSAT2LTR 12796 0.0630 (181/2875) 0 * * Os_TE_544394 Chr2 21088626 21088625 + ORSgTEMT02400041 225 0.2757 (821/2978) 0 * Os_TE_544393 Os_TE_544393 Chr2 21088622 21088623 - ORSgTEMT02400246 177 0.2799 (836/2987) 0 * Os_TE_544394 Os_TE_544389 Chr2 21087486 21087485 + ORSiTEMT00300001 383 0.0003 (1/2945) 0 * * Os_TE_544346 Chr2 21063451 21063452 - RETRO2_LTR 12874 0.0007 (2/2995) 0 * Os_TE_544345 Os_TE_544345 Chr2 21063447 21063446 + RETRO2_LTR 12874 0.0007 (2/2995) 0 * Os_TE_544346 Os_TE_544340 Chr2 21057130 21057129 - TYPEH 309 0.2742 (818/2983) 0 * * Os_TE_544334 Chr2 21054610 21054611 + RIREX_LTR 8828 0.0003 (1/2972) 0 * * Os_TE_544330 Chr2 21051912 21051707 - TOURIST-XV 239 0.7292 (2133/2925) 1 Intact * Os_TE_544320 Chr2 21047753 21047531 - TOURIST-XV 239 0.7328 (2178/2972) 1 Intact * Os_TE_544319 Chr2 21045344 21045343 + ORSgTEMT01601488 239 0.0017 (5/2957) 0 * Os_TE_544318 Os_TE_544318 Chr2 21045341 21045342 - ORSgTEMT01600639 228 0.0017 (5/2989) 0 * Os_TE_544319 Os_TE_544294 Chr2 21031648 21031649 + MuDR-N6_OS 836 0.0007 (2/2981) 0 * * Os_TE_544281 Chr2 21022969 21022970 - COPIA2-LTR_OS 6433 0.0005 (1/1861) 0 * Os_TE_544280 Os_TE_544280 Chr2 21022965 21022964 + COPIA2-LTR_OS 6433 0.0005 (1/2201) 0 * Os_TE_544281 Os_TE_544274 Chr2 21021794 21021584 - ORSgTEMT01600768 234 0.5928 (1753/2957) 1 Intact Os_TE_544273 Os_TE_544273 Chr2 21021584 21021794 - ORSgTEMT01600768 234 0.6083 (1752/2880) 1 Intact Os_TE_544274 Os_TE_544269 Chr2 21020815 21020814 - COPIA2-LTR_OS 6433 0.0007 (2/2975) 0 * * Os_TE_544268 Chr2 21020490 21020489 + ORSgTEMT00502171 134 0.4187 (1244/2971) 0 * * Os_TE_544258 Chr2 21018114 21018113 - ORSgTEMT01600639 228 0.4211 (1252/2973) 0 * * Os_TE_544256 Chr2 21017800 21017801 + COPI2_LTR 4733 0.0003 (1/2987) 0 * Os_TE_544255 Os_TE_544255 Chr2 21017796 21017795 - COPI2_LTR 4733 0.0003 (1/2963) 0 * Os_TE_544256 Os_TE_544254 Chr2 21017440 21017441 - RIREX_LTR 8828 0.0003 (1/2977) 0 * Os_TE_544253 Os_TE_544253 Chr2 21017436 21017435 + RIREX_LTR 8828 0.0003 (1/2990) 0 * Os_TE_544254 Os_TE_544250 Chr2 21016582 21016769 + EXPLORER 210 0.5928 (1744/2942) 1 Intact * Os_TE_544249 Chr2 21016339 21016338 - COPIA2-LTR_OS 6433 0.0004 (1/2787) 0 * * Os_TE_544245 Chr2 21013495 21013494 + ORSgTEMT01601122 212 0.0003 (1/2955) 0 * * Os_TE_544236 Chr2 21012678 21012677 + ORSgTEMT01701265 147 0.4181 (1245/2978) 0 * * Os_TE_544228 Chr2 21011324 21011184 - ORSgTETNOOT01930 140 0.6056 (1786/2949) 1 Intact Os_TE_544225 Os_TE_544225 Chr2 21011181 21011318 + ORSgTEMT00500201 140 0.6048 (1795/2968) 1 Intact Os_TE_544228 Os_TE_544224 Chr2 21010982 21010981 + ORSgTEMT00101674 340 0.4299 (1278/2973) 0 * Os_TE_544223 Os_TE_544223 Chr2 21010980 21010981 + ORSgTEMT00100709 333 0.4153 (1219/2935) 0 * Os_TE_544224 Os_TE_544209 Chr2 21004483 21004225 + ORSgTETNOOT02577 232 0.5898 (1757/2979) 1 Intact * Os_TE_544206 Chr2 21001480 21001479 - ORSgTEMT01602413 239 0.6834 (2025/2963) 0 * * Os_TE_544201 Chr2 20999599 20999598 + ORSgTETN00200005 1121 0.6878 (2029/2950) 0 * Os_TE_544200 Os_TE_544200 Chr2 20999598 20999599 + CACTA-H 1152 0.6763 (1928/2851) 0 * Os_TE_544201 Os_TE_544195 Chr2 20998092 20997949 - ORSgTEMT00501204 149 0.3330 (968/2907) 1 Intact Os_TE_544194 Os_TE_544194 Chr2 20997942 20998087 - ORSgTEMT00502337 144 0.3244 (960/2959) 1 Intact Os_TE_544195 Os_TE_544171 Chr2 20986779 20986780 + RIREX_LTR 8828 0.0003 (1/2938) 0 * Os_TE_544170 Os_TE_544170 Chr2 20986775 20986774 - RIREX_LTR 8828 0.0003 (1/2943) 0 * Os_TE_544171 Os_TE_544168 Chr2 20985284 20985285 - SZ-35LTR 3853 0.0050 (15/2993) 0 * Os_TE_544167 Os_TE_544167 Chr2 20985280 20985279 + RETROSAT4_LTR 13504 0.0050 (15/2994) 0 * Os_TE_544168 Os_TE_544143 Chr2 20975901 20975902 + SC-8_LTR 4951 0.0003 (1/2983) 0 * Os_TE_544142 Os_TE_544142 Chr2 20975897 20975896 - SC-8_LTR 4951 0.0003 (1/2985) 0 * Os_TE_544143 Os_TE_544116 Chr2 20961099 20961098 + STOWAWAY51_OS 246 0.0004 (1/2535) 0 * * Os_TE_544096 Chr2 20953439 20952410 - RETRO2_LTR 12874 0.3177 (943/2968) 1 Solo_LTR Os_TE_544095 Os_TE_544095 Chr2 20952410 20953439 + RETRO2_LTR 12874 0.2982 (866/2904) 1 Solo_LTR Os_TE_544096 Os_TE_544078 Chr2 20948459 20948458 - OSTE24 683 0.0194 (58/2989) 0 * * Os_TE_544066 Chr2 20942533 20942534 - ORSgTETN00200001 10994 0.0207 (62/2998) 0 * Os_TE_544065 Os_TE_544065 Chr2 20942531 20942530 + SPMLIKE 10989 0.0207 (62/2999) 0 * Os_TE_544066 Os_TE_544052 Chr2 20937366 20934370 - TRUNCATOR 2918 0.3120 (930/2981) 1 Intact Os_TE_544043 Os_TE_544043 Chr2 20934370 20937362 + TRUNCATOR 2918 0.3192 (955/2992) 1 Intact Os_TE_544052 Os_TE_544029 Chr2 20926496 20926497 + SC-8_LTR 4951 0.0003 (1/2983) 0 * Os_TE_544028 Os_TE_544028 Chr2 20926492 20926491 - SC-8_LTR 4951 0.0003 (1/2984) 0 * Os_TE_544029 Os_TE_544024 Chr2 20916948 20916947 - SC-3_LTR 5748 0.0040 (12/2982) 0 * * Os_TE_543998 Chr2 20900957 20900958 - SC-8_LTR 4951 0.0010 (3/2990) 0 * Os_TE_543997 Os_TE_543997 Chr2 20900953 20900952 + SC-8_LTR 4951 0.0010 (3/2992) 0 * Os_TE_543998 Os_TE_543989 Chr2 20895777 20895778 + SZ-29LTR 1393 0.0017 (5/2967) 0 * Os_TE_543988 Os_TE_543988 Chr2 20895773 20895772 - SZ-44LTR 1408 0.0017 (5/2969) 0 * Os_TE_543989 Os_TE_543980 Chr2 20893022 20893023 - NDNA2TNA_OS 346 0.0518 (148/2858) 0 * Os_TE_543979 Os_TE_543979 Chr2 20893019 20893018 + NDNA2TNA_OS 346 0.0513 (153/2980) 0 * Os_TE_543980 Os_TE_543936 Chr2 20879394 20879395 + DS-RICE2N 613 0.0074 (22/2980) 0 * Os_TE_543935 Os_TE_543935 Chr2 20879387 20879386 - DS-RICE2N 613 0.0074 (22/2976) 0 * Os_TE_543936 Os_TE_543934 Chr2 20878817 20878818 + YOUREN 286 0.0017 (5/2986) 0 * * Os_TE_543924 Chr2 20877401 20877402 - ORSgTEMT01600902 239 0.0013 (4/2981) 0 * * Os_TE_543909 Chr2 20871582 20871583 + ORSiTERTOOT00226 792 0.0003 (1/2967) 0 * Os_TE_543908 Os_TE_543908 Chr2 20871578 20871577 - SZ-22_LTR 4403 0.0003 (1/2958) 0 * Os_TE_543909 Os_TE_543904 Chr2 20870338 20870337 + TELIA 141 0.0003 (1/2985) 0 * * Os_TE_543892 Chr2 20864569 20860670 - SZ-35LTR 3853 0.3486 (1033/2963) 1 Intact Os_TE_543888 Os_TE_543888 Chr2 20860670 20864569 + RETROSAT4_LTR 13504 0.3413 (1009/2956) 1 Solo_LTR Os_TE_543892 Os_TE_543886 Chr2 20859533 20859532 + COPI2_LTR 4733 0.0007 (2/2982) 0 * * Os_TE_543881 Chr2 20856132 20856131 - COPIO_LTR 11693 0.0130 (39/2998) 0 * * Os_TE_543856 Chr2 20850886 20850885 + SZ-9LTR 965 0.3340 (998/2988) 0 * * Os_TE_543832 Chr2 20831346 20831347 + MUDRN5_OS 374 0.0023 (7/2993) 0 * * Os_TE_543754 Chr2 20799836 20799835 - TRUNCATOR2_LTR 2904 0.0003 (1/2994) 0 * * Os_TE_543709 Chr2 20778131 20778132 - ORSgTETN00200001 10994 0.0882 (230/2607) 0 * Os_TE_543708 Os_TE_543708 Chr2 20778129 20778128 + SPMLIKE 10989 0.0677 (163/2408) 0 * Os_TE_543709 Os_TE_543692 Chr2 20770018 20770019 - RIREX_LTR 8828 0.0007 (2/2962) 0 * * Os_TE_543635 Chr2 20745490 20745491 + ORSiTERTOOT00226 792 0.0003 (1/2997) 0 * * Os_TE_543628 Chr2 20742171 20745150 - TRUNCATOR 2918 0.2469 (727/2945) 1 Intact * Os_TE_543623 Chr2 20738263 20738264 + SC-8_LTR 4951 0.0003 (1/2995) 0 * Os_TE_543622 Os_TE_543622 Chr2 20738259 20738258 - SC-8_LTR 4951 0.0003 (1/2991) 0 * Os_TE_543623 Os_TE_543621 Chr2 20736901 20736902 - SC-8_LTR 4951 0.0047 (14/2995) 0 * Os_TE_543620 Os_TE_543620 Chr2 20736897 20736896 + SC-8_LTR 4951 0.0047 (14/2995) 0 * Os_TE_543621 Os_TE_543619 Chr2 20735503 20735504 + SC-8_LTR 4951 0.0007 (2/2998) 0 * * Os_TE_543617 Chr2 20734516 20734517 + ORSiTERTOOT00296 5553 0.0003 (1/2996) 0 * Os_TE_543616 Os_TE_543616 Chr2 20734512 20734511 - SC-3_LTR 5748 0.0003 (1/2995) 0 * Os_TE_543617 Os_TE_543604 Chr2 20730687 20730686 + SC-8_LTR 4951 0.0003 (1/2998) 0 * * Os_TE_543586 Chr2 20725103 20725104 + OSTE33 1012 0.1354 (404/2983) 0 * Os_TE_543585 Os_TE_543585 Chr2 20725094 20725093 + OSTE33 1012 0.1124 (329/2927) 0 * Os_TE_543586 Os_TE_543573 Chr2 20722281 20722282 - ORSgTETNOOT00053 263 0.0008 (2/2453) 0 * Os_TE_543572 Os_TE_543572 Chr2 20722279 20722278 - INDITTO 263 0.0008 (2/2404) 0 * Os_TE_543573 Os_TE_543498 Chr2 20679892 20679893 - SC-8_LTR 4951 0.0007 (2/2986) 0 * Os_TE_543497 Os_TE_543497 Chr2 20679888 20679887 + SC-8_LTR 4951 0.0007 (2/2991) 0 * Os_TE_543498 Os_TE_543492 Chr2 20675204 20675203 + COPIA2-LTR_OS 6433 0.0031 (9/2940) 0 * * Os_TE_543486 Chr2 20673996 20673997 + RIREX_LTR 8828 0.0013 (4/2995) 0 * Os_TE_543485 Os_TE_543485 Chr2 20673992 20673991 - RIREX_LTR 8828 0.0010 (3/2996) 0 * Os_TE_543486 Os_TE_543477 Chr2 20670126 20670127 - SZ-22_LTR 4403 0.0017 (5/2992) 0 * Os_TE_543476 Os_TE_543476 Chr2 20670122 20670121 + ORSiTERTOOT00097 759 0.0017 (5/2995) 0 * Os_TE_543477 Os_TE_543456 Chr2 20650166 20650167 + OSTE9 421 0.0013 (4/2994) 0 * * Os_TE_543435 Chr2 20630168 20630167 + F569 228 0.0003 (1/2989) 0 * * Os_TE_543414 Chr2 20626993 20626994 + ORSiTERTOOT00226 792 0.0003 (1/2990) 0 * Os_TE_543413 Os_TE_543413 Chr2 20626989 20626988 - SZ-22_LTR 4403 0.0003 (1/2989) 0 * Os_TE_543414 Os_TE_543411 Chr2 20626945 20626946 + ORSiTEMT01000008 242 0.0003 (1/2992) 0 * * Os_TE_543407 Chr2 20625289 20625290 + OSTE33 1012 0.0003 (1/2990) 0 * * Os_TE_543403 Chr2 20622954 20622955 - TYPEM 227 0.0003 (1/2987) 0 * * Os_TE_543401 Chr2 20621337 20621336 + COPI2_LTR 4733 0.0003 (1/2991) 0 * * Os_TE_543375 Chr2 20609723 20611743 + RPO_OS 1983 0.8723 (1756/2013) 1 Intact * Os_TE_543342 Chr2 20602451 20602452 + ORSgTEMT01601591 242 0.0005 (1/1841) 0 * * Os_TE_543334 Chr2 20601240 20601241 + EnSpm-15_OS 8871 0.4212 (1249/2965) 0 * Os_TE_543333 Os_TE_543333 Chr2 20601238 20601237 - EnSpm-15_OS 8871 0.4192 (1242/2963) 0 * Os_TE_543334 Os_TE_543321 Chr2 20595885 20595884 - SZ-22_LTR 4403 0.0003 (1/2992) 0 * * Os_TE_543314 Chr2 20593767 20593768 + ORSiTERTOOT00405 2317 0.0009 (1/1113) 0 * * Os_TE_543286 Chr2 20583511 20583510 + ORSgTEMT01601591 242 0.0003 (1/2993) 0 * Os_TE_543285 Os_TE_543285 Chr2 20583508 20583509 + ORSgTEMT01601591 242 0.0003 (1/2994) 0 * Os_TE_543286 Os_TE_543282 Chr2 20581707 20581708 - COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * Os_TE_543281 Os_TE_543281 Chr2 20581703 20581702 + COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_543282 Os_TE_543272 Chr2 20579814 20579815 - SZ-22_LTR 4403 0.0003 (1/2997) 0 * Os_TE_543271 Os_TE_543271 Chr2 20579810 20579809 + ORSiTERTOOT00226 792 0.0003 (1/2995) 0 * Os_TE_543272 Os_TE_543264 Chr2 20576480 20576479 - COPIA2-LTR_OS 6433 0.0003 (1/2978) 0 * * Os_TE_543235 Chr2 20565601 20565602 + RIREX_LTR 8828 0.0007 (2/2997) 0 * Os_TE_543234 Os_TE_543234 Chr2 20565597 20565596 - RIREX_LTR 8828 0.0003 (1/2995) 0 * Os_TE_543235 Os_TE_543225 Chr2 20564610 20564611 + GYPSY-A_LTR 8951 0.0003 (1/2949) 0 * Os_TE_543224 Os_TE_543224 Chr2 20564606 20564605 - GYPSY-A_LTR 8951 0.0003 (1/2945) 0 * Os_TE_543225 Os_TE_543181 Chr2 20538894 20538895 - RIRE2_LTR 11306 0.0003 (1/2980) 0 * Os_TE_543180 Os_TE_543180 Chr2 20538890 20538889 + RIREX_LTR 8828 0.0003 (1/2978) 0 * Os_TE_543181 Os_TE_543159 Chr2 20531659 20531658 + WUWU 113 0.0017 (5/2998) 0 * * Os_TE_543147 Chr2 20529053 20529054 - RETROSAT2LTR 12796 0.0500 (128/2562) 0 * Os_TE_543146 Os_TE_543146 Chr2 20529051 20529050 + RETROSAT2LTR 12796 0.0475 (142/2990) 0 * Os_TE_543147 Os_TE_543144 Chr2 20529027 20517997 - MuDR2_OS 6770 0.2172 (646/2974) 1 Intact * Os_TE_543134 Chr2 20527081 20527080 - RIRE3A_LTR 10580 0.0030 (3/1015) 0 * * Os_TE_543130 Chr2 20517319 20517320 + ORSiTERTOOT00028 8600 0.0003 (1/2990) 0 * * Os_TE_543126 Chr2 20515715 20515714 + MPING 430 0.0003 (1/2970) 0 * * Os_TE_543113 Chr2 20509816 20508377 - MDR2 6967 0.2222 (661/2975) 1 Intact Os_TE_543110 Os_TE_543110 Chr2 20508377 20509816 - MDR2 6967 0.2223 (662/2978) 1 Intact Os_TE_543113 Os_TE_543098 Chr2 20502642 20502643 + SPMLIKE 10989 0.1177 (329/2796) 0 * * Os_TE_543063 Chr2 20483737 20483396 + ORSgTEMT00100291 345 0.3584 (1072/2991) 1 Intact * Os_TE_543059 Chr2 20482899 20482541 - ORSgTEMT00600085 364 0.3619 (1065/2943) 1 Intact * Os_TE_543055 Chr2 20482510 20482511 + EnSpm-16_OS 13336 0.6361 (1811/2847) 0 * * Os_TE_543050 Chr2 20480743 20480742 - SPMLIKE 10989 0.0891 (259/2908) 0 * * Os_TE_543028 Chr2 20472412 20472413 + STOWAWAY13_OS 251 0.0070 (7/1001) 0 * * Os_TE_543002 Chr2 20456754 20469422 + ENSPM3_OS 10837 0.3640 (1051/2887) 1 Intact * Os_TE_542998 Chr2 20455881 20455880 + RIRE3_LTR 12054 0.0490 (144/2941) 0 * * Os_TE_542997 Chr2 20455665 20455666 - ORSgTETN00200001 10994 0.6489 (1915/2951) 0 * Os_TE_542996 Os_TE_542996 Chr2 20455660 20455659 + SPMLIKE 10989 0.6394 (1848/2890) 0 * Os_TE_542997 Os_TE_542981 Chr2 20449282 20449283 + COPI2_LTR 4733 0.0013 (4/2979) 0 * * Os_TE_542979 Chr2 20448958 20448959 + RIREX_LTR 8828 0.0003 (1/2975) 0 * Os_TE_542978 Os_TE_542978 Chr2 20448954 20448953 - RIREX_LTR 8828 0.0003 (1/2984) 0 * Os_TE_542979 Os_TE_542976 Chr2 20448722 20425683 - ORSgTETN00200001 10994 0.3529 (1027/2910) 1 Intact Os_TE_542959 Os_TE_542959 Chr2 20425680 20448722 + CACTA-B 1103 0.3558 (1060/2979) 1 Intact Os_TE_542976 Os_TE_542958 Chr2 20424950 20424575 + ORSgTEMT00300122 416 0.3903 (1078/2762) 1 Intact * Os_TE_542951 Chr2 20424023 20424024 - RIREX_LTR 8828 0.0003 (1/2984) 0 * * Os_TE_542946 Chr2 20422019 20422020 + ORSiTERTOOT00291 11421 0.0017 (5/2897) 0 * * Os_TE_542944 Chr2 20421973 20421972 + COPIA1-LTR_OS 9292 0.6532 (1942/2973) 0 * * Os_TE_542943 Chr2 20421635 20421419 + ORSgTEMT02400034 225 0.3709 (1079/2909) 1 Intact Os_TE_542942 Os_TE_542942 Chr2 20421413 20421632 - ORSgTEMT02400179 221 0.3615 (1071/2963) 1 Intact Os_TE_542943 Os_TE_542939 Chr2 20420407 20420406 - ORSgTETN00200001 10994 0.3331 (989/2969) 0 * Os_TE_542938 Os_TE_542938 Chr2 20420369 20420370 + SPMLIKE 10989 0.3295 (974/2956) 0 * Os_TE_542939 Os_TE_542937 Chr2 20420185 20420186 - ORSgTETN00200001 10994 0.0003 (1/2971) 0 * * Os_TE_542925 Chr2 20412545 20412546 - ORSiTERT00200154 9386 0.0020 (6/2990) 0 * Os_TE_542924 Os_TE_542924 Chr2 20412539 20412538 + TRUNCATOR 2918 0.0017 (5/2987) 0 * Os_TE_542925 Os_TE_542909 Chr2 20403675 20403676 - TEMPINDAS 4259 0.1001 (300/2996) 0 * * Os_TE_542903 Chr2 20402169 20402168 - RETROSAT4_LTR 13504 0.2555 (745/2916) 0 * * Os_TE_542858 Chr2 20375665 20375666 + SC-8_LTR 4951 0.0003 (1/2991) 0 * Os_TE_542857 Os_TE_542857 Chr2 20375661 20375660 - SC-8_LTR 4951 0.0003 (1/2994) 0 * Os_TE_542858 Os_TE_542855 Chr2 20374970 20374971 - SC-3_LTR 5748 0.0010 (3/2953) 0 * Os_TE_542854 Os_TE_542854 Chr2 20374966 20374965 + ORSiTERTOOT00296 5553 0.0010 (3/2949) 0 * Os_TE_542855 Os_TE_542845 Chr2 20370347 20370346 - SC-3_LTR 5748 0.0402 (120/2986) 0 * * Os_TE_542789 Chr2 20349619 20349618 - TRUNCATOR2_LTR 2904 0.0003 (1/2996) 0 * * Os_TE_542773 Chr2 20344784 20344783 + ORSgTETNOOT01834 251 0.0010 (3/2878) 0 * * Os_TE_542766 Chr2 20343749 20343748 - TRUNCATOR 2918 0.0051 (15/2969) 0 * Os_TE_542765 Os_TE_542765 Chr2 20343748 20343749 + TRUNCATOR 2918 0.0061 (18/2974) 0 * Os_TE_542766 Os_TE_542746 Chr2 20332589 20332590 - COPIA2-LTR_OS 6433 0.0003 (1/2967) 0 * Os_TE_542745 Os_TE_542745 Chr2 20332585 20332584 + COPIA2-LTR_OS 6433 0.0003 (1/2968) 0 * Os_TE_542746 Os_TE_542701 Chr2 20308891 20308892 + COPIA2-LTR_OS 6433 0.0017 (5/2996) 0 * Os_TE_542700 Os_TE_542700 Chr2 20308887 20308886 - COPIA2-LTR_OS 6433 0.0017 (5/2996) 0 * Os_TE_542701 Os_TE_542666 Chr2 20298336 20298335 - TRUNCATOR 2918 0.3802 (1135/2985) 0 * * Os_TE_542662 Chr2 20298110 20287105 + SPMLIKE 10989 0.3628 (1078/2971) 1 Intact Os_TE_542653 Os_TE_542653 Chr2 20287105 20298046 - ORSgTETN00200001 10994 0.3427 (993/2898) 1 Intact Os_TE_542662 Os_TE_542650 Chr2 20286698 20286697 - OSTE19 162 0.0036 (4/1101) 0 * * Os_TE_542615 Chr2 20276979 20276980 + COPI2_LTR 4733 0.0003 (1/2991) 0 * Os_TE_542614 Os_TE_542614 Chr2 20276975 20276974 - COPI2_LTR 4733 0.0003 (1/2987) 0 * Os_TE_542615 Os_TE_542596 Chr2 20267821 20267822 + COPIA2-LTR_OS 6433 0.0021 (5/2357) 0 * * Os_TE_542549 Chr2 20252229 20252230 + ORSiTERTOOT00226 792 0.0003 (1/2863) 0 * * Os_TE_542542 Chr2 20250587 20250588 + SPMLIKE 10989 0.0592 (175/2956) 0 * Os_TE_542541 Os_TE_542541 Chr2 20250585 20250584 - ORSgTETN00200001 10994 0.0620 (184/2967) 0 * Os_TE_542542 Os_TE_542540 Chr2 20249806 20249805 - ORSgTEMT00101173 343 0.0017 (5/2951) 0 * * Os_TE_542529 Chr2 20246872 20246873 - ORSgTEMT01601111 238 0.0017 (5/2996) 0 * * Os_TE_542499 Chr2 20233555 20233556 - RIRE7_LTR 7615 0.0003 (1/2996) 0 * * Os_TE_542478 Chr2 20226966 20226965 + STOWAWAY11_OS 292 0.0010 (3/2933) 0 * * Os_TE_542463 Chr2 20223450 20223451 - INDITTO 263 0.0023 (7/2980) 0 * Os_TE_542462 Os_TE_542462 Chr2 20223448 20223447 - ORSgTETNOOT02000 263 0.0023 (7/2984) 0 * Os_TE_542463 Os_TE_542450 Chr2 20218763 20218762 - MPING 430 0.0003 (1/2963) 0 * * Os_TE_542435 Chr2 20202166 20202165 + TRUNCATOR 2918 0.0017 (5/2995) 0 * Os_TE_542434 Os_TE_542434 Chr2 20202165 20202166 - TRUNCATOR 2918 0.0013 (4/2994) 0 * Os_TE_542435 Os_TE_542375 Chr2 20172536 20174342 - RPO_OS 1983 0.5902 (1607/2723) -1 Intact * Os_TE_542371 Chr2 20168257 20168012 - ORSgTEMT01601525 239 0.7332 (2166/2954) 1 Intact * Os_TE_542364 Chr2 20167695 20167917 - STOWAWAY43_OS 233 0.6112 (1827/2989) 1 Intact * Os_TE_542363 Chr2 20167518 20167517 + NDNA1TNA_OS 334 0.0207 (61/2943) 0 * Os_TE_542362 Os_TE_542362 Chr2 20167490 20167491 + ORSgTEMT00100272 356 0.0329 (92/2799) 0 * Os_TE_542363 Os_TE_542359 Chr2 20166159 20166158 + ORSgTEMT01400009 212 0.6146 (1821/2963) 0 * * Os_TE_542351 Chr2 20163596 20163597 + JINHUA 479 0.6405 (1871/2921) 0 * * Os_TE_542341 Chr2 20160411 20160412 + MPING 430 0.0003 (1/2951) 0 * Os_TE_542340 Os_TE_542340 Chr2 20160409 20160408 - MPING 430 0.0003 (1/2969) 0 * Os_TE_542341 Os_TE_542324 Chr2 20159242 20159241 - ORSgTEMT00900935 248 0.6477 (1936/2989) 0 * * Os_TE_542322 Chr2 20157004 20156625 - ORSgTEMT03000007 372 0.3564 (1051/2949) 1 Intact * Os_TE_542300 Chr2 20147054 20147053 + SZ-22_LTR 4403 0.0003 (1/2997) 0 * * Os_TE_542290 Chr2 20145474 20145475 - COPIA2-LTR_OS 6433 0.0011 (3/2788) 0 * * Os_TE_542289 Chr2 20144730 20144731 - INDITTO 263 0.0013 (4/2998) 0 * Os_TE_542288 Os_TE_542288 Chr2 20144728 20144727 - ORSgTETNOOT00053 263 0.0013 (4/2997) 0 * Os_TE_542289 Os_TE_542277 Chr2 20140790 20140789 + MERMITEB 1610 0.6534 (1887/2888) 0 * * Os_TE_542256 Chr2 20132476 20132477 - SZ-22_LTR 4403 0.0004 (1/2415) 0 * Os_TE_542255 Os_TE_542255 Chr2 20132472 20132471 + ORSiTERTOOT00226 792 0.0003 (1/2975) 0 * Os_TE_542256 Os_TE_542253 Chr2 20130561 20129692 + JINHUA 479 0.3596 (1069/2973) 1 Intact * Os_TE_542225 Chr2 20119509 20119510 - ORSiTERTOOT00441 4741 0.0003 (1/2994) 0 * Os_TE_542224 Os_TE_542224 Chr2 20119505 20119504 + ORSiTERTOOT00441 4741 0.0003 (1/2994) 0 * Os_TE_542225 Os_TE_542216 Chr2 20115858 20114465 + OSTE33 1012 0.4002 (1155/2886) 1 Intact Os_TE_542212 Os_TE_542212 Chr2 20114465 20115858 - OSTE33 1012 0.3484 (924/2652) 1 Intact Os_TE_542216 Os_TE_542178 Chr2 20102348 20102349 + RIREX_LTR 8828 0.1285 (381/2964) 0 * * Os_TE_542150 Chr2 20091003 20091004 - RIRE3_LTR 12054 0.0003 (1/2987) 0 * * Os_TE_542143 Chr2 20088894 20088895 + RIREX_LTR 8828 0.0003 (1/2963) 0 * Os_TE_542142 Os_TE_542142 Chr2 20088890 20088889 - RIREX_LTR 8828 0.0003 (1/2962) 0 * Os_TE_542143 Os_TE_542114 Chr2 20081795 20081794 + RIREX_LTR 8828 0.0006 (1/1638) 0 * * Os_TE_542113 Chr2 20080485 20080486 - TRSA_OS 353 0.0004 (1/2670) 0 * * Os_TE_542112 Chr2 20079825 20079826 - F804 170 0.6081 (1777/2922) 0 * Os_TE_542111 Os_TE_542111 Chr2 20079816 20079815 + F804 170 0.6061 (1763/2909) 0 * Os_TE_542112 Os_TE_542102 Chr2 20079214 20079215 - ORSgTEMT00500512 153 0.0004 (1/2706) 0 * * Os_TE_542084 Chr2 20077375 20077137 + ORSgTEMT00900079 241 0.8241 (1251/1518) 1 Intact * Os_TE_542073 Chr2 20074413 20074414 - ORSgTEMT00901388 250 0.6135 (1832/2986) 0 * * Os_TE_542071 Chr2 20074340 20074127 + ORSgTEMT00900139 244 0.4057 (1216/2997) 1 Intact Os_TE_542069 Os_TE_542069 Chr2 20074133 20074320 + ORSgTEMT00900917 208 0.4106 (1213/2954) 1 Intact Os_TE_542071 Os_TE_542045 Chr2 20066328 20066327 - ORSgTEMT00300008 396 0.4562 (1350/2959) 0 * * Os_TE_542028 Chr2 20061144 20061145 + SC-8_LTR 4951 0.0013 (4/2986) 0 * Os_TE_542027 Os_TE_542027 Chr2 20061140 20061139 - SC-8_LTR 4951 0.0010 (3/2991) 0 * Os_TE_542028 Os_TE_542022 Chr2 20060020 20060019 + STOWAWAY51_OS 246 0.0041 (12/2932) 0 * Os_TE_542021 Os_TE_542021 Chr2 20060014 20060015 - STOWAWAY51_OS 246 0.0045 (13/2900) 0 * Os_TE_542022 Os_TE_541992 Chr2 20049767 20049766 + ORSgTEMT01701858 154 0.0007 (2/2987) 0 * * Os_TE_541989 Chr2 20049376 20049375 + TRUNCATOR 2918 0.0638 (191/2993) 0 * Os_TE_541988 Os_TE_541988 Chr2 20049375 20049376 - TRUNCATOR 2918 0.0602 (180/2991) 0 * Os_TE_541989 Os_TE_541945 Chr2 20032125 20032126 + COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_541944 Os_TE_541944 Chr2 20032121 20032120 - COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_541945 Os_TE_541891 Chr2 20004473 20004472 - ORSgTEMT02000041 194 0.0044 (13/2947) 0 * * Os_TE_541856 Chr2 19992614 19992615 + OSTONOR1_LTR 6440 0.0003 (1/2951) 0 * Os_TE_541855 Os_TE_541855 Chr2 19992610 19992609 - OSTONOR1_LTR 6440 0.0003 (1/2948) 0 * Os_TE_541856 Os_TE_541838 Chr2 19987860 19987861 + RETRO2_LTR 12874 0.0114 (33/2889) 0 * Os_TE_541837 Os_TE_541837 Chr2 19987856 19987855 - RETRO2_LTR 12874 0.0114 (33/2905) 0 * Os_TE_541838 Os_TE_541825 Chr2 19983154 19983153 + RIREX_LTR 8828 0.0025 (7/2761) 0 * * Os_TE_541823 Chr2 19978870 19978871 + ORSgTEMT00100272 356 0.0010 (3/2998) 0 * * Os_TE_541822 Chr2 19978726 19978727 + INDITTO 263 0.0013 (4/2984) 0 * Os_TE_541821 Os_TE_541821 Chr2 19978724 19978723 - INDITTO 263 0.0013 (4/2991) 0 * Os_TE_541822 Os_TE_541789 Chr2 19964527 19964269 + ORSgTEMT00901844 250 0.4913 (1468/2988) 1 Intact Os_TE_541786 Os_TE_541786 Chr2 19964269 19964527 + ORSgTEMT00900230 250 0.4921 (1471/2989) 1 Intact Os_TE_541789 Os_TE_541754 Chr2 19947161 19947162 - SC-8_LTR 4951 0.0003 (1/2962) 0 * Os_TE_541753 Os_TE_541753 Chr2 19947157 19947156 + SC-8_LTR 4951 0.0003 (1/2969) 0 * Os_TE_541754 Os_TE_541752 Chr2 19946653 19946654 + RIREX_LTR 8828 0.0401 (120/2990) 0 * Os_TE_541751 Os_TE_541751 Chr2 19946649 19946648 - RIREX_LTR 8828 0.0401 (120/2990) 0 * Os_TE_541752 Os_TE_541742 Chr2 19936070 19932190 - RETROSAT4_LTR 13504 0.5017 (1455/2900) 1 Solo_LTR Os_TE_541739 Os_TE_541739 Chr2 19932191 19936070 + RETROSAT4_LTR 13504 0.4611 (1299/2817) 1 Solo_LTR Os_TE_541742 Os_TE_541647 Chr2 19909474 19904309 - HARB-1_OS 5166 0.3748 (1111/2964) 1 Intact Os_TE_541646 Os_TE_541646 Chr2 19904309 19909474 + HARB-1_OS 5166 0.3788 (1124/2967) 1 Intact Os_TE_541647 Os_TE_541643 Chr2 19902897 19902898 - COPI2_LTR 4733 0.0003 (1/2984) 0 * Os_TE_541642 Os_TE_541642 Chr2 19902893 19902892 + COPI2_LTR 4733 0.0003 (1/2989) 0 * Os_TE_541643 Os_TE_541635 Chr2 19900301 19900302 + F569 228 0.0003 (1/2988) 0 * Os_TE_541634 Os_TE_541634 Chr2 19900299 19900298 - F569 228 0.0003 (1/2986) 0 * Os_TE_541635 Os_TE_541578 Chr2 19877211 19876554 + DS-RICE4N 715 0.4490 (1328/2958) 1 Intact * Os_TE_541571 Chr2 19873021 19873020 + TRUNCATOR 2918 0.0006 (1/1551) 0 * * Os_TE_541570 Chr2 19872279 19872280 - SC-3_LTR 5748 0.0003 (1/2994) 0 * Os_TE_541569 Os_TE_541569 Chr2 19872275 19872274 + ORSiTERTOOT00296 5553 0.0003 (1/2989) 0 * Os_TE_541570 Os_TE_541502 Chr2 19846749 19846748 + DS-RICE3N 525 0.0014 (4/2951) 0 * * Os_TE_541500 Chr2 19846104 19846103 + ORSgTEMT01700299 212 0.0017 (5/2982) 0 * Os_TE_541499 Os_TE_541499 Chr2 19846101 19846102 - ORSgTEMT01701254 154 0.0017 (5/2973) 0 * Os_TE_541500 Os_TE_541494 Chr2 19842583 19842582 - SZ-31LTR 1470 0.0017 (5/2998) 0 * * Os_TE_541482 Chr2 19839245 19838833 + ORSgTEMT00300069 394 0.4595 (1356/2951) 1 Intact * Os_TE_541477 Chr2 19837973 19837972 + DITAIL 271 0.0017 (5/2985) 0 * * Os_TE_541473 Chr2 19836701 19836702 - RIREX_LTR 8828 0.0003 (1/2995) 0 * Os_TE_541472 Os_TE_541472 Chr2 19836697 19836696 + RIREX_LTR 8828 0.0003 (1/2992) 0 * Os_TE_541473 Os_TE_541347 Chr2 19788364 19788365 - ORSgTETN00200001 10994 0.0281 (84/2989) 0 * Os_TE_541346 Os_TE_541346 Chr2 19788362 19788361 + SPMLIKE 10989 0.0324 (97/2995) 0 * Os_TE_541347 Os_TE_541325 Chr2 19784467 19784468 + COPI2_LTR 4733 0.0003 (1/2980) 0 * Os_TE_541324 Os_TE_541324 Chr2 19784463 19784462 - COPI2_LTR 4733 0.0003 (1/2985) 0 * Os_TE_541325 Os_TE_541270 Chr2 19764809 19764808 - OSTE24 683 0.1600 (471/2944) 0 * * Os_TE_541268 Chr2 19763548 19763549 + COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_541267 Os_TE_541267 Chr2 19763544 19763543 - COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_541268 Os_TE_541256 Chr2 19757956 19757957 + RIREX_LTR 8828 0.0003 (1/2969) 0 * Os_TE_541255 Os_TE_541255 Chr2 19757952 19757951 - RIREX_LTR 8828 0.0003 (1/2970) 0 * Os_TE_541256 Os_TE_541253 Chr2 19757533 19757680 - ORSgTEMT00400012 148 0.4558 (1361/2986) 1 Intact * Os_TE_541233 Chr2 19749583 19749584 + Cassandra_OS-LTR 764 0.0005 (1/1890) 0 * * Os_TE_541153 Chr2 19721808 19721809 - TELIA 141 0.0323 (96/2973) 0 * * Os_TE_541145 Chr2 19720770 19720771 + ORSgTEMT00600376 329 0.0460 (137/2976) 0 * Os_TE_541144 Os_TE_541144 Chr2 19720765 19720764 + ORSgTEMT00600272 361 0.0464 (138/2976) 0 * Os_TE_541145 Os_TE_541111 Chr2 19705887 19705886 + ORSiTERTOOT00226 792 0.0007 (2/2991) 0 * * Os_TE_541031 Chr2 19679320 19679321 + ORSgTERTOOT00009 12852 0.5212 (1560/2993) 0 * Os_TE_541030 Os_TE_541030 Chr2 19679316 19679315 - RETRO2_LTR 12874 0.5184 (1547/2984) 0 * Os_TE_541031 Os_TE_541001 Chr2 19661660 19661661 + RIREX_LTR 8828 0.0003 (1/2996) 0 * * Os_TE_540991 Chr2 19658435 19658434 - ORSgTEMT00900099 250 0.0007 (2/2991) 0 * Os_TE_540990 Os_TE_540990 Chr2 19658431 19658432 + ORSgTEMT00901798 232 0.0007 (2/2994) 0 * Os_TE_540991 Os_TE_540974 Chr2 19649532 19649533 - ORSgTEMT00501204 149 0.4843 (1446/2986) 0 * * Os_TE_540952 Chr2 19641022 19641021 - ORSgTEMT01701403 154 0.0010 (3/2983) 0 * * Os_TE_540950 Chr2 19639357 19639358 - GYPSY-B_LTR 7068 0.0013 (4/2976) 0 * * Os_TE_540948 Chr2 19638937 19638936 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * * Os_TE_540946 Chr2 19636215 19636216 + ORSiTERTOOT00296 5553 0.0017 (5/2977) 0 * Os_TE_540945 Os_TE_540945 Chr2 19636211 19636210 - SC-3_LTR 5748 0.0017 (5/2976) 0 * Os_TE_540946 Os_TE_540928 Chr2 19630855 19630854 + AMYLTP 383 0.0018 (4/2213) 0 * * Os_TE_540919 Chr2 19628490 19628489 - TRUNCATOR2_LTR 2904 0.0015 (1/654) -1 * * Os_TE_540900 Chr2 19615725 19615724 + TREP220 109 0.0017 (5/2990) 0 * * Os_TE_540871 Chr2 19609870 19609869 - RETROSAT4_LTR 13504 0.0007 (2/2998) 0 * * Os_TE_540863 Chr2 19606366 19606367 + RIREX_LTR 8828 0.0003 (1/2963) 0 * Os_TE_540862 Os_TE_540862 Chr2 19606362 19606361 - RIREX_LTR 8828 0.0003 (1/2975) 0 * Os_TE_540863 Os_TE_540855 Chr2 19605158 19605157 + ORSgTEMT01601934 207 0.0003 (1/2950) 0 * * Os_TE_540839 Chr2 19602564 19602565 + SZ-62LTR 3649 0.0230 (69/2997) 0 * Os_TE_540838 Os_TE_540838 Chr2 19602560 19602559 - SZ-62LTR 3649 0.0227 (68/2995) 0 * Os_TE_540839 Os_TE_540829 Chr2 19599558 19599559 + ORSgTEMT00501204 149 0.4635 (1385/2988) 0 * * Os_TE_540827 Chr2 19599360 19599359 + ORSgTEMT00300122 416 0.0386 (65/1682) 0 * * Os_TE_540821 Chr2 19598633 19598632 - OSMAR1 5265 0.0007 (2/2986) 0 * Os_TE_540820 Os_TE_540820 Chr2 19598630 19598631 + OSMAR1 5265 0.0010 (3/2978) 0 * Os_TE_540821 Os_TE_540819 Chr2 19597376 19595719 - MERMITED 1572 0.5526 (1654/2993) 1 Intact * Os_TE_540810 Chr2 19592308 19592309 - F770 284 0.0264 (77/2921) 0 * * Os_TE_540807 Chr2 19591257 19591258 - TELIA 141 0.0010 (3/2995) 0 * Os_TE_540806 Os_TE_540806 Chr2 19591249 19591248 + TELIA 141 0.0010 (3/2995) 0 * Os_TE_540807 Os_TE_540802 Chr2 19590251 19589989 + INDITTO 263 0.5234 (1557/2975) 1 Intact Os_TE_540798 Os_TE_540801 Chr2 19590242 19589989 - ORSgTETNOOT02044 254 0.5267 (1566/2973) 1 Intact Os_TE_540799 Os_TE_540799 Chr2 19589989 19590251 + ORSgTETNOOT01690 244 0.5300 (1581/2983) 1 Intact Os_TE_540801 Os_TE_540798 Chr2 19589981 19590250 - ORSgTETNOOT00303 256 0.5308 (1585/2986) 1 Intact Os_TE_540802 Os_TE_540796 Chr2 19589347 19589348 - COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * Os_TE_540795 Os_TE_540795 Chr2 19589343 19589342 + COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_540796 Os_TE_540794 Chr2 19589016 19589017 - COPI2_LTR 4733 0.0003 (1/2923) 0 * Os_TE_540793 Os_TE_540793 Chr2 19589012 19589011 + COPI2_LTR 4733 0.0003 (1/2990) 0 * Os_TE_540794 Os_TE_540789 Chr2 19588302 19588301 - ORSgTEMT01702039 162 0.0238 (71/2983) 0 * Os_TE_540788 Os_TE_540788 Chr2 19588301 19588302 - ORSgTEMT01702255 155 0.0248 (74/2984) 0 * Os_TE_540789 Os_TE_540786 Chr2 19586583 19586220 - ORSgTEMT00600085 364 0.5378 (1571/2921) 1 Intact Os_TE_540783 Os_TE_540783 Chr2 19586220 19586583 + CASTAWAY 364 0.5275 (1575/2986) 1 Intact Os_TE_540786 Os_TE_540771 Chr2 19580919 19580920 + BUHUI 375 0.0257 (76/2953) 0 * * Os_TE_540743 Chr2 19570022 19569784 + ORSgTEMT01601983 238 0.5208 (1550/2976) 1 Intact Os_TE_540742 Os_TE_540742 Chr2 19569784 19570022 + ORSgTEMT01601934 207 0.5233 (1562/2985) 1 Intact Os_TE_540743 Os_TE_540678 Chr2 19549683 19548273 + OSTE33 1012 0.7108 (1846/2597) 1 Intact Os_TE_540676 Os_TE_540676 Chr2 19548273 19549683 + OSTE33 1012 0.7466 (2157/2889) 1 Intact Os_TE_540678 Os_TE_540662 Chr2 19546446 19546447 + COPIA2-LTR_OS 6433 0.0003 (1/2935) 0 * Os_TE_540661 Os_TE_540661 Chr2 19546442 19546441 - COPIA2-LTR_OS 6433 0.0003 (1/2937) 0 * Os_TE_540662 Os_TE_540575 Chr2 19499853 19499852 - ORSiTERTOOT00004 4000 0.0007 (2/2990) 0 * * Os_TE_540574 Chr2 19499133 19499134 - INDITTO 263 0.0010 (3/2899) 0 * Os_TE_540573 Os_TE_540573 Chr2 19499131 19499130 + ORSgTETNOOT02316 263 0.0010 (3/2967) 0 * Os_TE_540574 Os_TE_540565 Chr2 19498258 19498259 - MPING 430 0.0104 (31/2994) 0 * Os_TE_540564 Os_TE_540564 Chr2 19498256 19498255 + MPING 430 0.0103 (31/2996) 0 * Os_TE_540565 Os_TE_540560 Chr2 19496375 19496376 - COPI2_LTR 4733 0.0003 (1/2982) 0 * Os_TE_540559 Os_TE_540559 Chr2 19496371 19496370 + COPI2_LTR 4733 0.0003 (1/2983) 0 * Os_TE_540560 Os_TE_540475 Chr2 19455847 19455848 + ORSiTERTOOT00296 5553 0.0003 (1/2998) 0 * * Os_TE_540470 Chr2 19454030 19454029 - STOWAWAY51_OS 246 0.0003 (1/2975) 0 * Os_TE_540469 Os_TE_540469 Chr2 19454024 19454025 + STOWAWAY51_OS 246 0.0003 (1/2982) 0 * Os_TE_540470 Os_TE_540467 Chr2 19453523 19453522 + TWIF 586 0.0003 (1/2982) 0 * * Os_TE_540460 Chr2 19449534 19449535 - AMYLTP 383 0.0013 (4/2978) 0 * Os_TE_540459 Os_TE_540459 Chr2 19449526 19449525 + AMYLTP 383 0.0017 (5/2979) 0 * Os_TE_540460 Os_TE_540411 Chr2 19429474 19429475 + RIREX_LTR 8828 0.0003 (1/2981) 0 * * Os_TE_540365 Chr2 19411906 19411907 + RIRE3A_LTR 10580 0.0003 (1/2994) 0 * * Os_TE_540356 Chr2 19405688 19405687 - TRUNCATOR2_LTR 2904 0.0003 (1/2997) 0 * * Os_TE_540301 Chr2 19389542 19389543 + RIRE2_LTR 11306 0.0007 (2/2999) 0 * * Os_TE_540287 Chr2 19384580 19384581 - COPIA2-LTR_OS 6433 0.0681 (204/2996) 0 * Os_TE_540286 Os_TE_540286 Chr2 19384576 19384575 + COPIA2-LTR_OS 6433 0.0643 (192/2988) 0 * Os_TE_540287 Os_TE_540285 Chr2 19383671 19383672 - COPI2_LTR 4733 0.0010 (3/2983) 0 * Os_TE_540284 Os_TE_540284 Chr2 19383667 19383666 + COPI2_LTR 4733 0.0013 (4/2981) 0 * Os_TE_540285 Os_TE_540247 Chr2 19370918 19370919 + SZ-40LTR 2465 0.0003 (1/2995) 0 * Os_TE_540246 Os_TE_540246 Chr2 19370914 19370913 - GYPSY-A_LTR 8951 0.0003 (1/2997) 0 * Os_TE_540247 Os_TE_540230 Chr2 19367710 19367711 - TELIA 141 0.0013 (4/2999) 0 * Os_TE_540229 Os_TE_540229 Chr2 19367702 19367701 + TELIA 141 0.0013 (4/2999) 0 * Os_TE_540230 Os_TE_540208 Chr2 19352218 19352219 + OSTE33 1012 0.0527 (152/2883) 0 * Os_TE_540207 Os_TE_540207 Chr2 19352209 19352208 + OSTE33 1012 0.0692 (202/2918) 0 * Os_TE_540208 Os_TE_540201 Chr2 19350401 19350402 - COPI2_LTR 4733 0.0004 (1/2543) -1 * Os_TE_540200 Os_TE_540200 Chr2 19350397 19350396 + COPI2_LTR 4733 0.0004 (1/2573) -1 * Os_TE_540201 Os_TE_540194 Chr2 19347565 19347564 - ORSiTERTOOT00301 9654 0.1111 (1/9) -1 * * Os_TE_540178 Chr2 19341457 19341458 - SC-8_LTR 4951 0.0030 (9/2985) 0 * Os_TE_540177 Os_TE_540177 Chr2 19341453 19341452 + SC-8_LTR 4951 0.0030 (9/2984) 0 * Os_TE_540178 Os_TE_540176 Chr2 19340662 19340663 + NDNA1TNA_OS 334 0.0732 (219/2993) 0 * * Os_TE_540160 Chr2 19336110 19336109 + ORSgTERTOOT00009 12852 0.0023 (7/2993) 0 * * Os_TE_540157 Chr2 19335481 19335482 + ORSiTERT00200145 12238 0.0017 (5/2996) 0 * Os_TE_540156 Os_TE_540156 Chr2 19335477 19335476 - SZ-67LTR 1540 0.0013 (4/2994) 0 * Os_TE_540157 Os_TE_540149 Chr2 19333652 19333651 - OSTE1 801 0.5387 (1614/2996) 0 * * Os_TE_540144 Chr2 19328026 19328025 - TYPEM 227 0.4638 (1389/2995) 0 * Os_TE_540143 Os_TE_540143 Chr2 19328024 19328025 - ORSgTEMT02400179 221 0.4621 (1382/2991) 0 * Os_TE_540144 Os_TE_540141 Chr2 19325019 19325020 - ORSgTERT00201216 11284 0.0651 (194/2979) 0 * Os_TE_540140 Os_TE_540140 Chr2 19325015 19325014 - RIRE2_LTR 11306 0.0655 (195/2979) 0 * Os_TE_540141 Os_TE_540114 Chr2 19318506 19318507 + RETRO1_LTR 8314 0.0014 (4/2912) 0 * Os_TE_540113 Os_TE_540113 Chr2 19318502 19318501 - RETRO2A_LTR 12895 0.0014 (4/2939) 0 * Os_TE_540114 Os_TE_540103 Chr2 19314674 19314673 + STOWAWAY51_OS 246 0.0021 (6/2922) 0 * Os_TE_540102 Os_TE_540102 Chr2 19314668 19314669 + ORSgTEMT01601591 242 0.0014 (4/2931) 0 * Os_TE_540103 Os_TE_540101 Chr2 19314569 19314570 + TRUNCATOR 2918 0.0698 (192/2749) 0 * Os_TE_540100 Os_TE_540100 Chr2 19314563 19314562 - ORSiTERT00200154 9386 0.0701 (191/2723) 0 * Os_TE_540101 Os_TE_540085 Chr2 19305055 19305054 + COPI2_LTR 4733 0.0004 (1/2846) 0 * * Os_TE_540079 Chr2 19303570 19303571 + ORSgTEMT01602051 240 0.0023 (7/2987) 0 * Os_TE_540078 Os_TE_540078 Chr2 19303566 19303565 - ORSgTEMT01602262 235 0.0020 (6/2989) 0 * Os_TE_540079 Os_TE_540052 Chr2 19292585 19292586 - SINE9_OS 293 0.4877 (1450/2973) 0 * * Os_TE_540037 Chr2 19287956 19287955 - RPO_OS 1983 0.0020 (6/2974) 0 * * Os_TE_540026 Chr2 19284233 19284234 + RIREX_LTR 8828 0.0024 (7/2977) 0 * * Os_TE_540020 Chr2 19280467 19280466 - RETROSAT2LTR 12796 0.0004 (1/2588) 0 * * Os_TE_540017 Chr2 19280407 19280406 + ORSiTERTOOT00226 792 0.0011 (3/2672) 0 * * Os_TE_539998 Chr2 19273599 19273600 - COPIA2-LTR_OS 6433 0.0024 (7/2974) 0 * Os_TE_539997 Os_TE_539997 Chr2 19273595 19273594 + COPIA2-LTR_OS 6433 0.0020 (6/2969) 0 * Os_TE_539998 Os_TE_539996 Chr2 19273237 19273238 + MPING 430 0.0003 (1/2997) 0 * Os_TE_539995 Os_TE_539995 Chr2 19273235 19273234 - MPING 430 0.0003 (1/2993) 0 * Os_TE_539996 Os_TE_539988 Chr2 19269747 19269748 - COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_539987 Os_TE_539987 Chr2 19269743 19269742 + COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_539988 Os_TE_539974 Chr2 19266782 19266783 - SC-8_LTR 4951 0.0080 (24/2991) 0 * Os_TE_539973 Os_TE_539973 Chr2 19266778 19266777 + SC-8_LTR 4951 0.0080 (24/2992) 0 * Os_TE_539974 Os_TE_539971 Chr2 19266540 19266541 - ORSgTEMT00600085 364 0.0023 (7/2998) 0 * * Os_TE_539962 Chr2 19259346 19259345 + OsSN3 183 0.0023 (7/2984) 0 * * Os_TE_539961 Chr2 19257965 19257966 + SC-8_LTR 4951 0.0007 (2/2988) 0 * Os_TE_539960 Os_TE_539960 Chr2 19257961 19257960 - SC-8_LTR 4951 0.0007 (2/2987) 0 * Os_TE_539961 Os_TE_539903 Chr2 19236338 19236337 - SUSU 279 0.0018 (5/2846) 0 * * Os_TE_539884 Chr2 19231607 19231606 + ORSgTEMT01602181 239 0.0524 (156/2975) 0 * Os_TE_539883 Os_TE_539883 Chr2 19231604 19231605 - ORSgTEMT01601768 238 0.0527 (157/2980) 0 * Os_TE_539884 Os_TE_539875 Chr2 19227929 19227928 + ORSgTEMT00501098 146 0.0023 (7/2997) 0 * * Os_TE_539865 Chr2 19218594 19218595 - INDITTO 263 0.0597 (176/2946) 0 * Os_TE_539864 Os_TE_539864 Chr2 19218592 19218591 + INDITTO 263 0.0590 (174/2947) 0 * Os_TE_539865 Os_TE_539863 Chr2 19218416 19218417 + ORSgTETNOOT00908 242 0.3486 (1033/2963) 0 * Os_TE_539862 Os_TE_539862 Chr2 19218408 19218407 + ORSgTETNOOT01219 231 0.3423 (1009/2948) 0 * Os_TE_539863 Os_TE_539852 Chr2 19214183 19214184 + INDITTO 263 0.0004 (1/2798) 0 * Os_TE_539851 Os_TE_539851 Chr2 19214181 19214180 - INDITTO 263 0.0003 (1/2903) 0 * Os_TE_539852 Os_TE_539846 Chr2 19211662 19211400 - INDITTO 263 0.4411 (1322/2997) 1 Intact Os_TE_539845 Os_TE_539845 Chr2 19211400 19211662 + INDITTO 263 0.4411 (1322/2997) 1 Intact Os_TE_539846 Os_TE_539835 Chr2 19209284 19209283 + ORSgTERT00200868 3395 0.0018 (5/2840) 0 * * Os_TE_539820 Chr2 19206552 19206551 + CASLET 354 0.1735 (513/2957) 0 * * Os_TE_539816 Chr2 19205315 19205314 + TAMI2 254 0.0398 (116/2911) 0 * * Os_TE_539766 Chr2 19186319 19186320 + MPING 430 0.0125 (37/2966) 0 * Os_TE_539765 Os_TE_539765 Chr2 19186317 19186316 - MPING 430 0.0124 (37/2972) 0 * Os_TE_539766 Os_TE_539752 Chr2 19183882 19183881 + COPIA2-LTR_OS 6433 0.0007 (2/2958) 0 * * Os_TE_539747 Chr2 19183315 19183314 - ORSgTEMT00300008 396 0.0017 (5/2888) 0 * * Os_TE_539688 Chr2 19168960 19168961 - OLO24 345 0.0003 (1/2968) 0 * Os_TE_539687 Os_TE_539687 Chr2 19168958 19168957 + OLO24 345 0.0003 (1/2970) 0 * Os_TE_539688 Os_TE_539674 Chr2 19162257 19162258 - RIREX_LTR 8828 0.0013 (4/2984) 0 * * Os_TE_539640 Chr2 19156458 19156459 + INDITTO 263 0.0014 (4/2962) 0 * Os_TE_539639 Os_TE_539639 Chr2 19156456 19156455 - INDITTO 263 0.0014 (4/2943) 0 * Os_TE_539640 Os_TE_539631 Chr2 19155588 19155589 + STOWAWAY1_OS 149 0.5918 (1711/2891) 0 * * Os_TE_539593 Chr2 19145789 19145788 + ORSgTEMT02400014 229 0.1014 (303/2988) 0 * Os_TE_539592 Os_TE_539592 Chr2 19145785 19145786 - ORSgTEMT02400246 177 0.1028 (308/2995) 0 * Os_TE_539593 Os_TE_539567 Chr2 19136579 19136578 + ORSiTERTOOT00226 792 0.0003 (1/2980) 0 * * Os_TE_539519 Chr2 19126869 19126868 - TELIA 141 0.0127 (38/2988) 0 * * Os_TE_539484 Chr2 19110400 19110399 + F770 284 0.0081 (24/2970) 0 * * Os_TE_539411 Chr2 19063494 19063495 + COPI2_LTR 4733 0.0004 (1/2805) 0 * * Os_TE_539322 Chr2 19028608 19028609 - TRUNCATOR2_LTR 2904 0.1120 (333/2972) 0 * Os_TE_539321 Os_TE_539321 Chr2 19028604 19028603 + ORSiCMCM00100019 2717 0.1038 (307/2959) 0 * Os_TE_539322 Os_TE_539272 Chr2 18997227 18997228 + ORSgTETNOOT01998 254 0.0047 (14/2987) 0 * Os_TE_539271 Os_TE_539271 Chr2 18997225 18997224 - ORSgTETNOOT00754 253 0.0054 (16/2982) 0 * Os_TE_539272 Os_TE_539262 Chr2 18992087 18992086 - OSTONOR1_LTR 6440 0.0003 (1/2917) 0 * * Os_TE_539170 Chr2 18950348 18950347 + COPIA1-LTR_OS 9292 0.0003 (1/2991) 0 * * Os_TE_539169 Chr2 18950119 18950120 + COPI2_LTR 4733 0.0010 (3/2984) 0 * Os_TE_539168 Os_TE_539168 Chr2 18950115 18950114 - COPI2_LTR 4733 0.0010 (3/2985) 0 * Os_TE_539169 Os_TE_539165 Chr2 18948246 18948247 + MPING 430 0.0018 (5/2855) 0 * Os_TE_539164 Os_TE_539164 Chr2 18948244 18948243 - MPING 430 0.0018 (5/2856) 0 * Os_TE_539165 Os_TE_539126 Chr2 18931385 18931386 + RIREX_LTR 8828 0.0003 (1/2989) 0 * Os_TE_539125 Os_TE_539125 Chr2 18931381 18931380 - RIREX_LTR 8828 0.0003 (1/2992) 0 * Os_TE_539126 Os_TE_539124 Chr2 18931053 18931054 + ORSgTERT00200139 1329 0.7659 (2294/2995) 0 * * Os_TE_539100 Chr2 18917713 18917712 - TYPEM 227 0.0020 (6/2997) 0 * Os_TE_539099 Os_TE_539099 Chr2 18917712 18917713 - ORSgTEMT02400148 214 0.0027 (8/2995) 0 * Os_TE_539100 Os_TE_539073 Chr2 18911878 18911879 + ORSiTERTOOT00226 792 0.0004 (1/2567) 0 * Os_TE_539072 Os_TE_539072 Chr2 18911874 18911873 - SZ-22_LTR 4403 0.0004 (1/2516) 0 * Os_TE_539073 Os_TE_539059 Chr2 18910160 18910159 - AMYLTP 383 0.0502 (63/1254) 0 * * Os_TE_539033 Chr2 18898664 18898665 - SZ-40LTR 2465 0.0050 (15/2994) 0 * * Os_TE_538982 Chr2 18878422 18878423 + HARB-1_OS 5166 0.0003 (1/2988) 0 * Os_TE_538981 Os_TE_538981 Chr2 18878420 18878419 - HARB-1_OS 5166 0.0003 (1/2988) 0 * Os_TE_538982 Os_TE_538979 Chr2 18878390 18878389 + RIREX_LTR 8828 0.0003 (1/2986) 0 * * Os_TE_538966 Chr2 18872401 18872402 + RPO_OS 1983 0.4349 (1292/2971) 0 * * Os_TE_538936 Chr2 18857323 18857324 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_538935 Os_TE_538935 Chr2 18857319 18857318 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_538936 Os_TE_538932 Chr2 18856923 18856924 + COPI2_LTR 4733 0.1139 (340/2985) 0 * Os_TE_538931 Os_TE_538931 Chr2 18856919 18856918 - COPI2_LTR 4733 0.1140 (340/2982) 0 * Os_TE_538932 Os_TE_538925 Chr2 18855888 18855889 - INDITTO 263 0.0003 (1/2988) 0 * Os_TE_538924 Os_TE_538924 Chr2 18855886 18855885 + INDITTO 263 0.0003 (1/2989) 0 * Os_TE_538925 Os_TE_538917 Chr2 18852054 18852055 + MPING 430 0.0003 (1/2971) 0 * Os_TE_538916 Os_TE_538916 Chr2 18852052 18852051 - MPING 430 0.0003 (1/2976) 0 * Os_TE_538917 Os_TE_538911 Chr2 18849553 18849554 - COPIA2-LTR_OS 6433 0.0011 (2/1792) 0 * Os_TE_538910 Os_TE_538910 Chr2 18849549 18849548 + COPIA2-LTR_OS 6433 0.0011 (2/1795) 0 * Os_TE_538911 Os_TE_538879 Chr2 18832264 18832263 + SZ-55_LTR 10318 0.0003 (1/2957) 0 * * Os_TE_538862 Chr2 18816483 18816482 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * * Os_TE_538856 Chr2 18811779 18811780 + RIREX_LTR 8828 0.0067 (20/2965) 0 * * Os_TE_538853 Chr2 18811215 18811216 - ORSiTERTOOT00035 413 0.0004 (1/2717) 0 * * Os_TE_538794 Chr2 18785192 18785193 + ORSgTEMT01701591 154 0.0027 (8/2968) 0 * * Os_TE_538762 Chr2 18770155 18770154 - COPIA2-LTR_OS 6433 0.0004 (1/2296) -1 * * Os_TE_538679 Chr2 18749365 18749366 + STOWAWAY11_OS 292 0.0014 (4/2956) 0 * Os_TE_538678 Os_TE_538678 Chr2 18749364 18749363 - STOWAWAY11_OS 292 0.0017 (5/2970) 0 * Os_TE_538679 Os_TE_538677 Chr2 18749327 18749328 - MPING 430 0.0003 (1/2953) 0 * Os_TE_538676 Os_TE_538676 Chr2 18749325 18749324 + MPING 430 0.0003 (1/2951) 0 * Os_TE_538677 Os_TE_538665 Chr2 18745186 18738765 + RIREX_LTR 8828 0.1644 (490/2980) 1 Intact Os_TE_538663 Os_TE_538663 Chr2 18738765 18745186 - RIREX_LTR 8828 0.1658 (495/2986) 1 Intact Os_TE_538665 Os_TE_538603 Chr2 18720396 18720397 - ORSgTEMT02400148 214 0.0017 (5/2973) 0 * * Os_TE_538545 Chr2 18702225 18702224 - GYPSY-A_LTR 8951 0.0003 (1/2954) 0 * * Os_TE_538518 Chr2 18697533 18697534 + CACTA-B 1103 0.0003 (1/2964) 0 * * Os_TE_538513 Chr2 18696374 18695161 + ENSPM4_OS 11610 0.1496 (430/2874) 1 Intact * Os_TE_538512 Chr2 18695167 18695168 - ORSgTERT00200842 1080 0.8524 (2448/2872) 0 * * Os_TE_538511 Chr2 18695161 18696373 - ENSPM4_OS 11610 0.1546 (446/2884) 1 Intact * Os_TE_538482 Chr2 18687750 18687751 + COPIA2-LTR_OS 6433 0.0037 (11/2996) 0 * Os_TE_538481 Os_TE_538481 Chr2 18687746 18687745 - COPIA2-LTR_OS 6433 0.0037 (11/2996) 0 * Os_TE_538482 Os_TE_538454 Chr2 18665434 18676283 - RIRE2_LTR 11306 0.1473 (426/2892) 1 Intact * Os_TE_538447 Chr2 18662543 18662544 - RETROSAT5_LTR 13878 0.0010 (3/2988) 0 * Os_TE_538446 Os_TE_538446 Chr2 18662539 18662538 + SZ-67LTR 1540 0.0017 (5/2989) 0 * Os_TE_538447 Os_TE_538445 Chr2 18662075 18662074 - ORSgTEMT02400246 177 0.0007 (2/2835) 0 * Os_TE_538444 Os_TE_538444 Chr2 18662074 18662075 - TYPEM 227 0.0007 (2/2788) 0 * Os_TE_538445 Os_TE_538395 Chr2 18642916 18642917 - ORSiTETNOOT00134 607 0.0003 (1/2976) 0 * Os_TE_538394 Os_TE_538394 Chr2 18642909 18642908 + TWIF 586 0.0003 (1/2973) 0 * Os_TE_538395 Os_TE_538370 Chr2 18633749 18633748 + ORSiTERTOOT00226 792 0.0003 (1/2984) 0 * * Os_TE_538329 Chr2 18621007 18621008 + COPI2_LTR 4733 0.0003 (1/2989) 0 * Os_TE_538328 Os_TE_538328 Chr2 18621003 18621002 - COPI2_LTR 4733 0.0003 (1/2991) 0 * Os_TE_538329 Os_TE_538318 Chr2 18617041 18617042 - ORSiTERTOOT00074 4935 0.0003 (1/2942) 0 * Os_TE_538317 Os_TE_538317 Chr2 18617037 18617036 + ORSiTERTOOT00074 4935 0.0003 (1/2970) 0 * Os_TE_538318 Os_TE_538280 Chr2 18607960 18607961 + BUHUI 375 0.0017 (5/2987) 0 * Os_TE_538279 Os_TE_538279 Chr2 18607958 18607957 - BUHUI 375 0.0010 (3/2991) 0 * Os_TE_538280 Os_TE_538229 Chr2 18592937 18592936 - TELIA 141 0.0003 (1/2997) 0 * * Os_TE_538169 Chr2 18575719 18575720 - SC-8_LTR 4951 0.0007 (2/2983) 0 * Os_TE_538168 Os_TE_538168 Chr2 18575715 18575714 + SC-8_LTR 4951 0.0007 (2/2987) 0 * Os_TE_538169 Os_TE_538160 Chr2 18573291 18573292 - COWARD 200 0.5281 (1568/2969) 0 * * Os_TE_538159 Chr2 18572583 18572582 - ORSgTEMT01400022 212 0.5254 (1560/2969) 0 * * Os_TE_538137 Chr2 18554464 18554465 - TRUNCATOR2_LTR 2904 0.0032 (5/1587) 0 * * Os_TE_538124 Chr2 18547891 18547892 + RIREX_LTR 8828 0.0013 (4/2970) 0 * * Os_TE_538117 Chr2 18544152 18544153 - ORSiTEMT02200001 210 0.0003 (1/2869) 0 * * Os_TE_538108 Chr2 18538276 18538277 + RIREX_LTR 8828 0.0003 (1/2936) 0 * Os_TE_538107 Os_TE_538107 Chr2 18538272 18538271 - RIREX_LTR 8828 0.0003 (1/2933) 0 * Os_TE_538108 Os_TE_538102 Chr2 18535216 18534787 - MPING 430 0.0154 (46/2979) 1 Intact Os_TE_538101 Os_TE_538101 Chr2 18534787 18535216 + MPING 430 0.0161 (48/2987) 1 Intact Os_TE_538102 Os_TE_538081 Chr2 18531570 18531569 + ORSiTERT00200145 12238 0.0014 (4/2911) 0 * * Os_TE_538073 Chr2 18529367 18529368 + SZ-62LTR 3649 0.2665 (796/2987) 0 * Os_TE_538072 Os_TE_538072 Chr2 18529363 18529362 - SZ-62LTR 3649 0.2692 (807/2998) 0 * Os_TE_538073 Os_TE_537986 Chr2 18507778 18507779 + ORSiTERTOOT00296 5553 0.2696 (807/2993) 0 * * Os_TE_537947 Chr2 18471951 18471952 - TRUNCATOR2_LTR 2904 0.2055 (601/2925) 0 * * Os_TE_537926 Chr2 18464455 18464456 + MPING 430 0.0017 (5/2987) 0 * Os_TE_537925 Os_TE_537925 Chr2 18464453 18464452 - MPING 430 0.0017 (5/2979) 0 * Os_TE_537926 Os_TE_537901 Chr2 18449486 18449485 + TNR12 528 0.0013 (4/2991) 0 * * Os_TE_537889 Chr2 18445646 18445647 - MPING 430 0.0003 (1/2989) 0 * Os_TE_537888 Os_TE_537888 Chr2 18445644 18445643 + MPING 430 0.0003 (1/2990) 0 * Os_TE_537889 Os_TE_537884 Chr2 18443742 18443741 + COPI2_LTR 4733 0.0003 (1/2965) 0 * * Os_TE_537874 Chr2 18441293 18441294 - RIREX_LTR 8828 0.0003 (1/2986) 0 * Os_TE_537873 Os_TE_537873 Chr2 18441289 18441288 + RIREX_LTR 8828 0.0003 (1/2987) 0 * Os_TE_537874 Os_TE_537826 Chr2 18422430 18422431 - ORSgTETN00200001 10994 0.2404 (711/2958) 0 * Os_TE_537825 Os_TE_537825 Chr2 18422428 18422427 + SPMLIKE 10989 0.1892 (512/2706) 0 * Os_TE_537826 Os_TE_537797 Chr2 18416381 18416380 - STOWAWAY51_OS 246 0.0083 (25/2995) 0 * Os_TE_537796 Os_TE_537796 Chr2 18416378 18416379 + ORSgTEMT01601591 242 0.0094 (28/2992) 0 * Os_TE_537797 Os_TE_537795 Chr2 18414086 18414085 - OSTE15 1168 0.0010 (3/2975) 0 * * Os_TE_537754 Chr2 18402132 18402131 + INDITTO 263 0.0040 (12/2989) 0 * * Os_TE_537733 Chr2 18398775 18398776 + RIREX_LTR 8828 0.0003 (1/2916) 0 * * Os_TE_537673 Chr2 18380617 18380616 + ORSiTERTOOT00034 791 0.0003 (1/2976) 0 * * Os_TE_537669 Chr2 18379633 18379634 + MERMITEB 1610 0.0023 (7/2998) 0 * * Os_TE_537656 Chr2 18376882 18376883 + RIREX_LTR 8828 0.0003 (1/2952) 0 * Os_TE_537655 Os_TE_537655 Chr2 18376878 18376877 - RIREX_LTR 8828 0.0003 (1/2945) 0 * Os_TE_537656 Os_TE_537642 Chr2 18366751 18366752 + ORSiTERTOOT00381 4988 0.0003 (1/2973) 0 * Os_TE_537641 Os_TE_537641 Chr2 18366747 18366746 - SC-8_LTR 4951 0.0003 (1/2972) 0 * Os_TE_537642 Os_TE_537554 Chr2 18322612 18322613 + GYPSY-A_LTR 8951 0.0086 (4/463) 0 * * Os_TE_537462 Chr2 18287420 18287419 - MERMITE-18 1263 0.0016 (4/2544) 0 * * Os_TE_537453 Chr2 18283244 18278089 - MuDR4_OS 7610 0.1528 (452/2959) 1 Intact Os_TE_537452 Os_TE_537452 Chr2 18278088 18283244 - MuDR4_OS 7610 0.1555 (464/2983) 1 Intact Os_TE_537453 Os_TE_537450 Chr2 18277861 18277860 - ORSgTEMT01400038 210 0.8135 (2006/2466) 0 * * Os_TE_537448 Chr2 18277365 18277366 - ORSgTEMT00100251 257 0.0007 (2/2879) 0 * * Os_TE_537437 Chr2 18273483 18273284 - OsSN3 183 0.7860 (382/486) 1 Intact * Os_TE_537430 Chr2 18272187 18272186 - ORSgTETN00200001 10994 0.5232 (531/1015) 0 * * Os_TE_537429 Chr2 18271727 18271728 - OSTE33 1012 0.8559 (2559/2990) 0 * Os_TE_537428 Os_TE_537428 Chr2 18271718 18271717 + OSTE33 1012 0.8154 (1975/2422) 0 * Os_TE_537429 Os_TE_537426 Chr2 18270464 18270465 + TRUNCATOR 2918 0.3987 (622/1560) 0 * * Os_TE_537423 Chr2 18269459 18269458 + ORSgTEMT00300063 413 0.8554 (2543/2973) 0 * * Os_TE_537413 Chr2 18267228 18267229 + ORSiTERTOOT00291 11421 0.0034 (5/1471) 0 * Os_TE_537412 Os_TE_537412 Chr2 18267224 18267223 - SZ-7A_LTR 11400 0.0014 (4/2865) 0 * Os_TE_537413 Os_TE_537410 Chr2 18267204 18267205 + ORSgTEMT01702111 154 0.8463 (2385/2818) 0 * * Os_TE_537401 Chr2 18265737 18265736 - RPO_OS 1983 0.0017 (5/2940) 0 * * Os_TE_537399 Chr2 18265616 18264242 - SZ-44LTR 1408 0.1584 (471/2973) 1 Intact Os_TE_537397 Os_TE_537397 Chr2 18264242 18265616 + SZ-44LTR 1408 0.1587 (468/2949) 1 Intact Os_TE_537399 Os_TE_537394 Chr2 18263710 18263711 + ORSgTETNOOT01834 251 0.0003 (1/2992) 0 * Os_TE_537393 Os_TE_537393 Chr2 18263708 18263707 + ORSgTETNOOT01998 254 0.0003 (1/2990) 0 * Os_TE_537394 Os_TE_537389 Chr2 18261965 18261703 - INDITTO 263 0.1625 (458/2818) 1 Intact Os_TE_537386 Os_TE_537386 Chr2 18261703 18261965 + INDITTO 263 0.1621 (470/2899) 1 Intact Os_TE_537389 Os_TE_537384 Chr2 18261534 18261533 + MDR2 6967 0.8488 (2482/2924) 0 * * Os_TE_537375 Chr2 18260358 18260357 + STOWAWAY50_OS 174 0.8424 (2437/2893) 0 * Os_TE_537374 Os_TE_537374 Chr2 18260352 18260353 + ORSgTEMT01700702 154 0.8451 (2471/2924) 0 * Os_TE_537375 Os_TE_537373 Chr2 18258434 18258435 + ORSgTEMT01701663 106 0.7851 (1582/2015) 0 * * Os_TE_537372 Chr2 18258154 18258017 - ORSgTETNOOT01930 140 0.2260 (468/2071) 1 Intact Os_TE_537371 Os_TE_537371 Chr2 18258014 18258151 + ORSgTEMT00500201 140 0.1815 (474/2611) 1 Intact Os_TE_537372 Os_TE_537370 Chr2 18257824 18257562 - ORSgTEMT05000161 276 0.5459 (476/872) 1 Intact * Os_TE_537355 Chr2 18252009 18252010 + MPING 430 0.0003 (1/2983) 0 * Os_TE_537354 Os_TE_537354 Chr2 18252007 18252006 - MPING 430 0.0003 (1/2917) 0 * Os_TE_537355 Os_TE_537351 Chr2 18251266 18251479 - COWARD 200 0.8217 (2170/2641) 1 Intact * Os_TE_537348 Chr2 18250175 18250176 - ORSgTEMT01700044 149 0.8067 (1916/2375) 0 * * Os_TE_537338 Chr2 18245796 18245797 + SINE03_OS 360 0.8464 (2474/2923) 0 * * Os_TE_537332 Chr2 18238674 18238885 + ORSgTEMT01601122 212 0.1636 (464/2836) 1 Intact * Os_TE_537331 Chr2 18238533 18238534 + ORSgTEMT01700715 134 0.8519 (2549/2992) 0 * Os_TE_537330 Os_TE_537330 Chr2 18238524 18238523 - ORSgTEMT01701882 154 0.0062 (3/487) 0 * Os_TE_537331 Os_TE_537329 Chr2 18234815 18234814 + EXPLORER 210 0.8504 (2541/2988) 0 * * Os_TE_537310 Chr2 18216550 18218994 + RPO_OS 1983 0.1614 (448/2775) 1 Intact * Os_TE_537305 Chr2 18214606 18214607 + ID-4 284 0.0017 (5/2909) 0 * Os_TE_537304 Os_TE_537304 Chr2 18214604 18214603 + ORSgTEMT04600010 284 0.0017 (5/2887) 0 * Os_TE_537305 Os_TE_537298 Chr2 18210526 18210527 + YOUREN 286 0.0105 (5/478) 0 * Os_TE_537297 Os_TE_537297 Chr2 18210524 18210523 + ORSgTEMT05200130 286 0.0022 (5/2253) 0 * Os_TE_537298 Os_TE_537191 Chr2 18133598 18133599 + MPING 430 0.0004 (1/2692) 0 * Os_TE_537190 Os_TE_537190 Chr2 18133596 18133595 - MPING 430 0.0004 (1/2659) 0 * Os_TE_537191 Os_TE_537157 Chr2 18124413 18124414 - STOWAWAY51_OS 246 0.0004 (1/2831) 0 * * Os_TE_537130 Chr2 18121985 18121986 - COPI2_LTR 4733 0.0023 (7/2997) 0 * Os_TE_537129 Os_TE_537129 Chr2 18121981 18121980 + COPI2_LTR 4733 0.0023 (7/2998) 0 * Os_TE_537130 Os_TE_537113 Chr2 18115908 18115907 - ORSgTETNOOT01501 171 0.0003 (1/2935) 0 * * Os_TE_537042 Chr2 18090567 18090568 + ORSgTETNOOT00908 242 0.0027 (8/2985) 0 * * Os_TE_537015 Chr2 18081394 18081395 - RETRO1_LTR 8314 0.0003 (1/2901) 0 * * Os_TE_537014 Chr2 18081300 18081301 - COPIA2-LTR_OS 6433 0.0003 (1/2971) 0 * * Os_TE_536981 Chr2 18065347 18065079 - ORSgTEMT06100010 269 0.1558 (464/2978) 1 Intact Os_TE_536980 Os_TE_536980 Chr2 18065079 18065347 + ORSgTEMT06100010 269 0.1580 (470/2975) 1 Intact Os_TE_536981 Os_TE_536972 Chr2 18061046 18061047 - RETROSAT4_LTR 13504 0.8478 (2534/2989) 0 * Os_TE_536971 Os_TE_536971 Chr2 18061042 18061041 + RETROSAT4_LTR 13504 0.8338 (2332/2797) 0 * Os_TE_536972 Os_TE_536970 Chr2 18059077 18059078 + COPIA3-LTR_OS 5061 0.0004 (1/2811) 0 * * Os_TE_536940 Chr2 18050301 18050300 + INDITTO 263 0.0007 (2/2963) 0 * * Os_TE_536937 Chr2 18046041 18046040 - SC-8_LTR 4951 0.0003 (1/2989) 0 * * Os_TE_536883 Chr2 18024480 18024481 - RETRO2_LTR 12874 0.1582 (468/2959) 0 * Os_TE_536882 Os_TE_536882 Chr2 18024476 18024475 + ORSgTERTOOT00009 12852 0.1613 (472/2926) 0.14 * Os_TE_536883 Os_TE_536833 Chr2 18006211 18006212 - COPIA2-LTR_OS 6433 0.0007 (2/2998) 0 * Os_TE_536832 Os_TE_536832 Chr2 18006207 18006206 + COPIA2-LTR_OS 6433 0.0007 (2/2998) 0 * Os_TE_536833 Os_TE_536723 Chr2 17965864 17965865 + COPIA2-LTR_OS 6433 0.0007 (2/2793) 0 * Os_TE_536722 Os_TE_536722 Chr2 17965860 17965859 - COPIA2-LTR_OS 6433 0.0007 (2/2791) 0 * Os_TE_536723 Os_TE_536695 Chr2 17955721 17955722 + OSTE33 1012 0.2177 (624/2866) 0 * * Os_TE_536671 Chr2 17947148 17947147 + STOWAWAY51_OS 246 0.0003 (1/2929) 0 * Os_TE_536670 Os_TE_536670 Chr2 17947142 17947143 - STOWAWAY51_OS 246 0.0003 (1/2922) 0 * Os_TE_536671 Os_TE_536644 Chr2 17933228 17933227 + SC-8_LTR 4951 0.0003 (1/2966) 0 * * Os_TE_536635 Chr2 17928034 17928033 + SPMLIKE 10989 0.1493 (447/2994) 0 * * Os_TE_536500 Chr2 17870719 17870718 - ORSgTETN00200001 10994 0.0020 (6/2970) 0 * * Os_TE_536491 Chr2 17865053 17865054 + ORSgTETNOOT01834 251 0.0855 (252/2949) 0 * Os_TE_536490 Os_TE_536490 Chr2 17865051 17865050 + ORSgTETNOOT01834 251 0.0861 (253/2937) 0 * Os_TE_536491 Os_TE_536482 Chr2 17863097 17863096 - COPIA2-LTR_OS 6433 0.0003 (1/2879) 0 * * Os_TE_536481 Chr2 17862173 17862172 - ORSgTEMT00300141 415 0.5300 (1378/2600) 0 * * Os_TE_536470 Chr2 17858852 17858851 + RETROSAT2LTR 12796 0.2996 (535/1786) 0 * * Os_TE_536449 Chr2 17850661 17850660 + SC-8_LTR 4951 0.0003 (1/2975) 0 * * Os_TE_536395 Chr2 17814269 17814270 - COPI2_LTR 4733 0.0003 (1/2991) 0 * Os_TE_536394 Os_TE_536394 Chr2 17814265 17814264 + COPI2_LTR 4733 0.0003 (1/2993) 0 * Os_TE_536395 Os_TE_536378 Chr2 17803528 17803212 + ORSgTEMT02900076 336 0.3518 (1035/2942) 1 Intact * Os_TE_536363 Chr2 17792487 17792486 - RPO_OS 1983 0.3829 (641/1674) 0 * * Os_TE_536349 Chr2 17787772 17786616 + CACTA-H 1152 0.3275 (942/2876) 1 Intact Os_TE_536346 Os_TE_536346 Chr2 17786616 17787772 - CACTA-H 1152 0.3485 (1042/2990) 1 Intact Os_TE_536349 Os_TE_536342 Chr2 17786105 17786384 - STOWAWAY13_OS 251 0.3459 (1026/2966) 1 Intact * Os_TE_536340 Chr2 17785668 17785984 + STOWAWAY11_OS 292 0.3607 (1040/2883) 1 Intact * Os_TE_536329 Chr2 17779733 17778288 - EnSpm-N2_OS 1282 0.3294 (918/2787) -1 Intact * Os_TE_536327 Chr2 17778112 17778111 + SINE03_OS 360 0.6085 (1595/2621) 0 * * Os_TE_536326 Chr2 17777615 17777616 + ORSgTETNOOT00908 242 0.0010 (3/2976) 0 * * Os_TE_536325 Chr2 17777584 17777583 + ORSgTEMT01601591 242 0.0328 (98/2987) 0 * * Os_TE_536312 Chr2 17774796 17774795 + RIREX_LTR 8828 0.0003 (1/2986) 0 * * Os_TE_536303 Chr2 17769016 17769017 + OLO24 345 0.4215 (736/1746) 0 * * Os_TE_536275 Chr2 17756133 17756134 + ORSiCMCM00100019 2717 0.0009 (1/1071) 0 * Os_TE_536274 Os_TE_536274 Chr2 17756129 17756128 - TRUNCATOR2_LTR 2904 0.0009 (1/1070) 0 * Os_TE_536275 Os_TE_536107 Chr2 17676810 17676809 - MPING 430 0.0004 (1/2318) 0 * * Os_TE_536056 Chr2 17648243 17675116 - TRUNCATOR2_LTR 2904 0.4424 (1048/2369) 1 Intact * Os_TE_536035 Chr2 17637706 17635402 - ENSPM3_OS 10837 0.5919 (1043/1762) 1 Intact * Os_TE_535943 Chr2 17582937 17582938 - SZ-22_LTR 4403 0.0003 (1/2994) 0 * * Os_TE_535938 Chr2 17577486 17577485 + SC-3_LTR 5748 0.0017 (5/2984) 0 * * Os_TE_535920 Chr2 17571227 17571228 - HARB-1_OS 5166 0.0007 (2/2960) 0 * Os_TE_535919 Os_TE_535919 Chr2 17571225 17571224 + HARB-1_OS 5166 0.0007 (2/2960) 0 * Os_TE_535920 Os_TE_535914 Chr2 17569292 17569291 + ORSgTEMT01602188 240 0.0003 (1/2925) 0 * * Os_TE_535904 Chr2 17566446 17565467 + CRATA 4786 0.3421 (1020/2982) 1 Intact Os_TE_535903 Os_TE_535903 Chr2 17565467 17566446 - CRATA 4786 0.3475 (1040/2993) 1 Intact Os_TE_535904 Os_TE_535842 Chr2 17543681 17543682 - SC-4_LTR 5218 0.0011 (3/2843) 0 * Os_TE_535841 Os_TE_535841 Chr2 17543677 17543676 + SC-4_LTR 5218 0.0011 (3/2846) 0 * Os_TE_535842 Os_TE_535818 Chr2 17534816 17529984 + SZ-6LTR 5035 0.4767 (1424/2987) 1 Intact * Os_TE_535813 Chr2 17529806 17534636 - SZ-6LTR 5035 0.4759 (1420/2984) 1 Intact * Os_TE_535777 Chr2 17515709 17515710 + TWIF 586 0.0003 (1/2910) 0 * * Os_TE_535775 Chr2 17514432 17514433 + INDITTO 263 0.1063 (315/2964) 0 * Os_TE_535774 Os_TE_535774 Chr2 17514430 17514429 - INDITTO 263 0.1088 (323/2970) 0 * Os_TE_535775 Os_TE_535769 Chr2 17510032 17510031 - ORSgTEMT01700376 152 0.1246 (318/2553) 0 * Os_TE_535768 Os_TE_535768 Chr2 17510031 17510032 - ORSgTEMT01700410 135 0.1094 (320/2925) 0 * Os_TE_535769 Os_TE_535765 Chr2 17509657 17509656 - MPING 430 0.0094 (28/2971) 0 * * Os_TE_535760 Chr2 17506444 17506445 - SC-3_LTR 5748 0.0003 (1/2983) 0 * * Os_TE_535751 Chr2 17498750 17498751 - SC-3_LTR 5748 0.0097 (28/2900) 0 * Os_TE_535750 Os_TE_535750 Chr2 17498746 17498745 + ORSiTERTOOT00296 5553 0.0097 (29/2998) 0 * Os_TE_535751 Os_TE_535749 Chr2 17498735 17498734 + ORSgTEMT01602669 216 0.1074 (319/2971) 0 * * Os_TE_535748 Chr2 17498729 17498730 - ORSgTEMT01601525 239 0.1028 (308/2996) 0 * Os_TE_535747 Os_TE_535747 Chr2 17498726 17498725 - ORSgTEMT01602420 228 0.1069 (320/2993) 0 * Os_TE_535748 Os_TE_535740 Chr2 17497514 17497513 - TELIA 141 0.0003 (1/2987) 0 * * Os_TE_535736 Chr2 17495469 17495470 - SC-8_LTR 4951 0.0003 (1/2942) 0 * Os_TE_535735 Os_TE_535735 Chr2 17495465 17495464 + SC-8_LTR 4951 0.0003 (1/2944) 0 * Os_TE_535736 Os_TE_535721 Chr2 17491852 17491851 + RETROSAT4_LTR 13504 0.0003 (1/2998) 0 * * Os_TE_535718 Chr2 17490470 17490471 - ORSgTEMT02000063 217 0.1058 (317/2996) 0 * Os_TE_535717 Os_TE_535717 Chr2 17490467 17490466 + ORSgTEMT02000059 196 0.1053 (315/2992) 0 * Os_TE_535718 Os_TE_535704 Chr2 17485219 17485220 + RIREX_LTR 8828 0.0003 (1/2994) 0 * Os_TE_535703 Os_TE_535703 Chr2 17485215 17485214 - RIREX_LTR 8828 0.0003 (1/2990) 0 * Os_TE_535704 Os_TE_535701 Chr2 17484799 17480660 + TRUNCATOR2_LTR 2904 0.3378 (1011/2993) 1 Intact * Os_TE_535689 Chr2 17474627 17477466 + SZ-61LTR 2410 0.3402 (1014/2981) 1 Intact * Os_TE_535679 Chr2 17463290 17463289 + MuDR4_OS 7610 0.0011 (1/941) 0 * * Os_TE_535664 Chr2 17460044 17460045 + ORSgTEMT00800058 376 0.0031 (9/2914) 0 * * Os_TE_535635 Chr2 17445957 17445958 + AMYLTP 383 0.0013 (4/2989) 0 * * Os_TE_535626 Chr2 17441678 17441679 - ORSgTERT00201216 11284 0.0180 (54/2997) 0 * Os_TE_535625 Os_TE_535625 Chr2 17441674 17441673 - RIRE2_LTR 11306 0.0184 (55/2997) 0 * Os_TE_535626 Os_TE_535597 Chr2 17427294 17427293 - ORSgTERT00201216 11284 0.0172 (51/2957) 0 * * Os_TE_535584 Chr2 17415994 17415993 + ORSgTETNOOT00908 242 0.0173 (51/2942) 0 * * Os_TE_535567 Chr2 17411417 17411416 - OSTE33 1012 0.6384 (1421/2226) 0 * * Os_TE_535524 Chr2 17382779 17382778 - ORSgTETN00200001 10994 0.0010 (1/1016) 0 * * Os_TE_535520 Chr2 17380484 17380485 + HARB-1_OS 5166 0.0661 (68/1028) 0 * * Os_TE_535518 Chr2 17380101 17380102 + ORSiTERTOOT00226 792 0.0019 (2/1037) 0 * * Os_TE_535511 Chr2 17373045 17373044 - RIREX_LTR 8828 0.0007 (1/1338) 0 * * Os_TE_535510 Chr2 17372555 17372556 - ENSPM5_OS 9581 0.0015 (4/2665) 0 * Os_TE_535509 Os_TE_535509 Chr2 17372553 17372552 + ENSPM5_OS 9581 0.0017 (5/2965) 0 * Os_TE_535510 Os_TE_535477 Chr2 17358683 17358684 - RIRE2_LTR 11306 0.0003 (1/2978) 0 * Os_TE_535476 Os_TE_535476 Chr2 17358679 17358678 - ORSgTERT00201216 11284 0.0003 (1/2977) 0 * Os_TE_535477 Os_TE_535459 Chr2 17351029 17351030 - RETROSAT2LTR 12796 0.0003 (1/2993) 0 * * Os_TE_535445 Chr2 17345202 17345201 + MERMITED 1572 0.0178 (53/2985) 0 * * Os_TE_535430 Chr2 17340485 17340486 - TYPEM 227 0.1109 (332/2995) 0 * * Os_TE_535414 Chr2 17336649 17336648 - ORSgTEMT00901723 248 0.0003 (1/2987) 0 * * Os_TE_535412 Chr2 17336241 17336242 - MuDR4_OS 7610 0.3778 (1116/2954) 0 * Os_TE_535411 Os_TE_535411 Chr2 17336235 17336234 - MuDR4_OS 7610 0.3896 (1163/2985) 0 * Os_TE_535412 Os_TE_535409 Chr2 17335699 17335700 + NDNA1TNA_OS 334 0.1132 (338/2985) 0 * * Os_TE_535381 Chr2 17326150 17326149 + ORSgTETNOOT00908 242 0.0087 (26/2978) 0 * * Os_TE_535351 Chr2 17308870 17308869 + RIREX_LTR 8828 0.0003 (1/2983) 0 * * Os_TE_535330 Chr2 17297012 17301539 - SZ-67LTR 1540 0.3248 (953/2934) 1 Intact * Os_TE_535326 Chr2 17293159 17293160 - RETROSAT5_LTR 13878 0.1589 (471/2965) 0 * Os_TE_535325 Os_TE_535325 Chr2 17293155 17293154 + ORSiTERT00200145 12238 0.1518 (449/2958) 0 * Os_TE_535326 Os_TE_535311 Chr2 17290199 17290200 - ORSgTERT00201216 11284 0.0003 (1/2968) 0 * Os_TE_535310 Os_TE_535310 Chr2 17290195 17290194 - RIRE2_LTR 11306 0.0003 (1/2961) 0 * Os_TE_535311 Os_TE_535296 Chr2 17278825 17278826 + INDITTO 263 0.6411 (1695/2644) 0 * * Os_TE_535291 Chr2 17276442 17276443 - INDITTO 263 0.0020 (6/2974) 0 * * Os_TE_535275 Chr2 17266037 17266038 + TWIF 586 0.0010 (3/2935) 0 * * Os_TE_535246 Chr2 17254907 17254908 + TNR2A 152 0.0657 (168/2556) 0 * * Os_TE_535202 Chr2 17237770 17237771 - FOCUS 257 0.1564 (467/2985) 0 * Os_TE_535201 Os_TE_535201 Chr2 17237768 17237767 + FOCUS 257 0.1609 (481/2990) 0 * Os_TE_535202 Os_TE_535186 Chr2 17231241 17231242 - ORSgTEMT00600304 361 0.0010 (3/2988) 0 * Os_TE_535185 Os_TE_535185 Chr2 17231238 17231237 - CASTAWAY 364 0.0010 (3/2991) 0 * Os_TE_535186 Os_TE_535183 Chr2 17230841 17230840 + RIREX_LTR 8828 0.0007 (2/2982) 0 * * Os_TE_535159 Chr2 17223688 17223689 - RETROFIT_LTR 4866 0.0003 (1/2993) 0 * Os_TE_535158 Os_TE_535158 Chr2 17223685 17223684 + ORSiTERTOOT00033 4884 0.0003 (1/2991) 0 * Os_TE_535159 Os_TE_535157 Chr2 17223411 17223412 + COPIA2-LTR_OS 6433 0.0003 (1/2978) 0 * Os_TE_535156 Os_TE_535156 Chr2 17223407 17223406 - COPIA2-LTR_OS 6433 0.0003 (1/2983) 0 * Os_TE_535157 Os_TE_535145 Chr2 17220739 17220740 + ORSgTEMT02400034 225 0.2228 (665/2985) 0 * * Os_TE_535144 Chr2 17219933 17219934 - ORSgTERT00100441 275 0.0005 (1/2116) -1 * * Os_TE_535109 Chr2 17202563 17202564 - STOWAWAY47_OS 148 0.0017 (5/2997) 0 * * Os_TE_535108 Chr2 17200732 17200733 + ORSiTERTOOT00296 5553 0.2789 (833/2987) 0 * Os_TE_535107 Os_TE_535107 Chr2 17200728 17200727 - SC-3_LTR 5748 0.2842 (849/2987) 0 * Os_TE_535108 Os_TE_535103 Chr2 17198077 17198076 - ORSgTEMT01601544 222 0.0013 (4/2977) 0 * * Os_TE_535094 Chr2 17196566 17196567 + ORSgTEMT01701663 106 0.0017 (5/2977) 0 * * Os_TE_535076 Chr2 17190475 17190476 - MDR2 6967 0.2806 (838/2986) 0 * Os_TE_535075 Os_TE_535075 Chr2 17190467 17190466 + MDR2 6967 0.2830 (845/2986) 0 * Os_TE_535076 Os_TE_535072 Chr2 17189139 17189138 - SZ-25LTR 330 0.0010 (3/2993) 0 * * Os_TE_535070 Chr2 17186765 17186766 - SC-8_LTR 4951 0.0003 (1/2973) 0 * * Os_TE_535060 Chr2 17177451 17177452 + TRSA_OS 353 0.0003 (1/2988) 0 * * Os_TE_535056 Chr2 17174425 17174426 - SZ-62LTR 3649 0.0037 (11/2980) 0 * Os_TE_535055 Os_TE_535055 Chr2 17174421 17174420 + SZ-62LTR 3649 0.0024 (7/2978) 0 * Os_TE_535056 Os_TE_535049 Chr2 17173770 17173769 + AMYLTP 383 0.0003 (1/2959) 0 * * Os_TE_535047 Chr2 17173248 17172867 - AMYLTP 383 0.3173 (945/2978) 1 Intact Os_TE_535044 Os_TE_535044 Chr2 17172867 17173248 + AMYLTP 383 0.3181 (949/2983) 1 Intact Os_TE_535047 Os_TE_535028 Chr2 17162047 17162048 + RIREX_LTR 8828 0.2213 (658/2974) 0 * * Os_TE_535023 Chr2 17161145 17161144 + ORSgTEMT01601591 242 0.0170 (50/2933) 0 * Os_TE_535022 Os_TE_535022 Chr2 17161139 17161140 + STOWAWAY51_OS 246 0.0196 (58/2958) 0 * Os_TE_535023 Os_TE_535015 Chr2 17155253 17155254 - COPIA2-LTR_OS 6433 0.0007 (2/2923) 0 * Os_TE_535014 Os_TE_535014 Chr2 17155249 17155248 + COPIA2-LTR_OS 6433 0.0007 (2/2920) 0 * Os_TE_535015 Os_TE_534923 Chr2 17123146 17123147 - RIREX_LTR 8828 0.0004 (1/2846) 0 * Os_TE_534922 Os_TE_534922 Chr2 17123142 17123141 + RIREX_LTR 8828 0.0004 (1/2851) 0 * Os_TE_534923 Os_TE_534909 Chr2 17120667 17120666 + SEVERIN-2 1952 0.0018 (5/2825) 0 * * Os_TE_534857 Chr2 17102398 17102399 - ORSgTERT00201216 11284 0.2612 (763/2921) 0 * Os_TE_534856 Os_TE_534856 Chr2 17102394 17102393 - RIRE2_LTR 11306 0.2607 (764/2931) 0 * Os_TE_534857 Os_TE_534823 Chr2 17082799 17082800 + COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * Os_TE_534822 Os_TE_534822 Chr2 17082795 17082794 - COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_534823 Os_TE_534804 Chr2 17077699 17077700 - SC-8_LTR 4951 0.0007 (2/2971) 0 * Os_TE_534803 Os_TE_534803 Chr2 17077695 17077694 + SC-8_LTR 4951 0.0007 (2/2976) 0 * Os_TE_534804 Os_TE_534793 Chr2 17073316 17073579 + F770 284 0.2872 (831/2893) 1 Intact * Os_TE_534744 Chr2 17062198 17062197 + RETROSAT2LTR 12796 0.1521 (450/2959) 0 * * Os_TE_534727 Chr2 17060962 17060963 - MPING 430 0.0010 (3/2870) 0 * Os_TE_534726 Os_TE_534726 Chr2 17060960 17060959 + MPING 430 0.0013 (4/2966) 0 * Os_TE_534727 Os_TE_534713 Chr2 17053187 17053188 - SC-8_LTR 4951 0.0003 (1/2996) 0 * Os_TE_534712 Os_TE_534712 Chr2 17053183 17053182 + SC-8_LTR 4951 0.0003 (1/2991) 0 * Os_TE_534713 Os_TE_534701 Chr2 17041392 17041391 - RPO_OS 1983 0.0017 (5/2992) 0 * Os_TE_534700 Os_TE_534700 Chr2 17041391 17041392 + RPO_OS 1983 0.0017 (5/2992) 0 * Os_TE_534701 Os_TE_534634 Chr2 17014157 17014158 + RIREX_LTR 8828 0.2854 (854/2992) 0 * Os_TE_534633 Os_TE_534633 Chr2 17014153 17014152 - RIREX_LTR 8828 0.2836 (848/2990) 0.05 * Os_TE_534634 Os_TE_534604 Chr2 17005169 17005170 + RIREX_LTR 8828 0.0007 (2/2961) 0 * Os_TE_534603 Os_TE_534603 Chr2 17005165 17005164 - RIREX_LTR 8828 0.0007 (2/2961) 0 * Os_TE_534604 Os_TE_534592 Chr2 17003280 17003281 + ORSiTERTOOT00034 791 0.1758 (476/2708) 0 * Os_TE_534591 Os_TE_534591 Chr2 17003276 17003275 - SZ-22_LTR 4403 0.1813 (492/2713) 0 * Os_TE_534592 Os_TE_534576 Chr2 16999074 16999073 + ORSgTEMT01701224 156 0.0020 (6/2989) 0 * * Os_TE_534562 Chr2 16994328 16994329 + RIREX_LTR 8828 0.0004 (1/2857) 0 * * Os_TE_534551 Chr2 16991608 16991609 - OLO24 345 0.0003 (1/2977) 0 * * Os_TE_534520 Chr2 16987214 16987458 + STOWAWAY51_OS 246 0.8930 (1169/1309) 1 Intact * Os_TE_534515 Chr2 16987078 16987079 + ORSgTETNOOT01998 254 0.0037 (11/2955) 0 * Os_TE_534514 Os_TE_534514 Chr2 16987076 16987075 + ORSgTETNOOT01834 251 0.0037 (11/2964) 0 * Os_TE_534515 Os_TE_534513 Chr2 16987022 16987023 + COPI2_LTR 4733 0.0003 (1/2947) 0 * * Os_TE_534509 Chr2 16984658 16984659 + ORSgTEMT00900230 250 0.0003 (1/2954) 0 * * Os_TE_534507 Chr2 16984012 16984013 + COPIA2-LTR_OS 6433 0.0007 (2/2990) 0 * Os_TE_534506 Os_TE_534506 Chr2 16984008 16984007 - COPIA2-LTR_OS 6433 0.0010 (3/2986) 0 * Os_TE_534507 Os_TE_534482 Chr2 16966153 16966152 - ORSgTEMT06000198 187 0.0016 (4/2464) 0 * * Os_TE_534460 Chr2 16960939 16960938 - TRUNCATOR 2918 0.0003 (1/2998) 0 * Os_TE_534459 Os_TE_534459 Chr2 16960938 16960939 + TRUNCATOR 2918 0.0003 (1/2995) 0 * Os_TE_534460 Os_TE_534456 Chr2 16958445 16958446 - RIREX_LTR 8828 0.0003 (1/2895) 0 * * Os_TE_534442 Chr2 16953520 16930069 - ORSgTETN00200001 10994 0.2007 (579/2885) 1 Intact * Os_TE_534384 Chr2 16913366 16913365 - ORSgTETN00200001 10994 0.7790 (2259/2900) 0 * Os_TE_534383 Os_TE_534383 Chr2 16913365 16913366 + CACTA-B 1103 0.7761 (2246/2894) 0 * Os_TE_534384 Os_TE_534382 Chr2 16911931 16911932 + OSCOPIA2_LTR 5476 0.0003 (1/2971) 0 * Os_TE_534381 Os_TE_534381 Chr2 16911927 16911926 - OSCOPIA2_LTR 5476 0.0003 (1/2969) 0 * Os_TE_534382 Os_TE_534360 Chr2 16908751 16908752 - RETROSAT4_LTR 13504 0.4957 (1443/2911) 0 * Os_TE_534359 Os_TE_534359 Chr2 16908747 16908746 + RETROSAT4_LTR 13504 0.1784 (338/1895) 0 * Os_TE_534360 Os_TE_534348 Chr2 16904163 16904162 + NDNA1TNA_OS 334 0.0278 (83/2988) 0 * * Os_TE_534130 Chr2 16836146 16836145 - SC-9_LTR 5279 0.0024 (5/2098) 0 * * Os_TE_534074 Chr2 16813144 16813145 + ENSPM3_OS 10837 0.0018 (5/2842) 0 * Os_TE_534073 Os_TE_534073 Chr2 16813142 16813141 - ENSPM3_OS 10837 0.0018 (5/2850) 0 * Os_TE_534074 Os_TE_534062 Chr2 16811000 16810999 + ORSgTEMT01601934 207 0.0017 (5/2885) 0 * Os_TE_534061 Os_TE_534061 Chr2 16810997 16810998 - ORSgTEMT01601696 238 0.0010 (3/2887) 0 * Os_TE_534062 Os_TE_534032 Chr2 16802072 16802073 + COPIA2-LTR_OS 6433 0.0003 (1/2889) 0 * Os_TE_534031 Os_TE_534031 Chr2 16802068 16802067 - COPIA2-LTR_OS 6433 0.0003 (1/2888) 0 * Os_TE_534032 Os_TE_534027 Chr2 16801547 16801548 + ORSiTERTOOT00028 8600 0.0004 (1/2812) 0 * Os_TE_534026 Os_TE_534026 Chr2 16801543 16801542 - TRUNCATOR2_LTR 2904 0.0004 (1/2819) 0 * Os_TE_534027 Os_TE_533930 Chr2 16774909 16774910 - RIREX_LTR 8828 0.0014 (4/2950) 0 * Os_TE_533929 Os_TE_533929 Chr2 16774905 16774904 + RIREX_LTR 8828 0.0014 (4/2954) 0 * Os_TE_533930 Os_TE_533906 Chr2 16762319 16762318 - ORSgTETN00200001 10994 0.0003 (1/2992) 0 * * Os_TE_533870 Chr2 16749850 16749851 - TRUNCATOR2_LTR 2904 0.0008 (1/1250) 0 * * Os_TE_533862 Chr2 16748973 16748974 + INDITTO 263 0.2987 (893/2990) 0 * Os_TE_533861 Os_TE_533861 Chr2 16748971 16748970 - INDITTO 263 0.2969 (888/2991) 0 * Os_TE_533862 Os_TE_533798 Chr2 16731884 16731885 - ORSgTEMT00100654 155 0.0003 (1/2898) 0 * * Os_TE_533743 Chr2 16706519 16706520 + OLO24 345 0.0077 (6/783) 0 * * Os_TE_533742 Chr2 16706169 16706039 + ORSgTEMT01701997 154 0.8004 (766/957) 1 Intact * Os_TE_533737 Chr2 16705124 16705125 - MuDR3_OS 8604 0.1113 (84/755) 0 * Os_TE_533736 Os_TE_533736 Chr2 16705116 16705115 + MuDR3_OS 8604 0.1000 (75/750) 0 * Os_TE_533737 Os_TE_533735 Chr2 16704987 16704986 + ORSgTEMT00300122 416 0.0065 (5/765) 0 * * Os_TE_533734 Chr2 16703763 16703764 - ORSgTERT00200351 477 0.1377 (126/915) 0 * * Os_TE_533705 Chr2 16690520 16690521 - UNIQUE 158 0.0003 (1/2971) 0 * * Os_TE_533679 Chr2 16678382 16678381 - ORSgTEMT00900034 246 0.0017 (5/2975) 0 * * Os_TE_533649 Chr2 16664240 16664241 - ORSgTEMT02400246 177 0.0014 (3/2176) 0 * * Os_TE_533629 Chr2 16659910 16659909 + DITTO 244 0.0005 (1/2146) 0 * * Os_TE_533626 Chr2 16659506 16659507 - MuDR3_OS 8604 0.2741 (791/2886) 0 * * Os_TE_533568 Chr2 16636752 16636753 + ORSiCMCM00100016 1387 0.0017 (5/2991) 0 * * Os_TE_533560 Chr2 16632903 16632904 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * * Os_TE_533530 Chr2 16622753 16622752 - STOWAWAY9_OS 235 0.0017 (5/2923) 0 * * Os_TE_533509 Chr2 16612643 16612644 - ORSiTETNOOT00156 3648 0.0756 (155/2049) 0 * Os_TE_533508 Os_TE_533508 Chr2 16612636 16612635 + TWIF 586 0.2931 (739/2521) 0 * Os_TE_533509 Os_TE_533507 Chr2 16612513 16612514 - HARB-1_OS 5166 0.0043 (9/2085) 0 * Os_TE_533506 Os_TE_533506 Chr2 16612511 16612510 + HARB-1_OS 5166 0.0049 (10/2050) 0 * Os_TE_533507 Os_TE_533481 Chr2 16599371 16599372 + TWIFB1 3737 0.0108 (27/2489) 0 * * Os_TE_533464 Chr2 16595511 16595510 - TRUNCATOR 2918 0.0003 (1/2994) 0 * Os_TE_533463 Os_TE_533463 Chr2 16595510 16595511 + TRUNCATOR 2918 0.0003 (1/2983) 0 * Os_TE_533464 Os_TE_533447 Chr2 16578556 16578555 + COPI2_LTR 4733 0.0003 (1/2998) 0 * * Os_TE_533419 Chr2 16559966 16559967 - COPIA2-LTR_OS 6433 0.0037 (11/2985) 0 * * Os_TE_533411 Chr2 16554891 16554890 + TRUNCATOR2_LTR 2904 0.0023 (7/2981) 0 * * Os_TE_533367 Chr2 16532147 16523591 + ORSiTERTOOT00028 8600 0.2089 (621/2973) 1 Intact * Os_TE_533316 Chr2 16502688 16502689 + RETRO2A_LTR 12895 0.0401 (120/2992) 0 * Os_TE_533315 Os_TE_533315 Chr2 16502684 16502683 - RETRO1_LTR 8314 0.0401 (120/2992) 0 * Os_TE_533316 Os_TE_533244 Chr2 16460270 16460271 + INDITTO 263 0.1407 (415/2949) 0 * Os_TE_533243 Os_TE_533243 Chr2 16460268 16460267 - INDITTO 263 0.1377 (405/2941) 0 * Os_TE_533244 Os_TE_533232 Chr2 16456059 16456060 - MuDR2_OS 6770 0.0017 (5/2996) 0 * * Os_TE_533230 Chr2 16454256 16454257 + TYPEU4 402 0.0003 (1/2995) 0 * Os_TE_533229 Os_TE_533229 Chr2 16454248 16454247 - TYPEU1 380 0.0003 (1/2992) 0 * Os_TE_533230 Os_TE_533228 Chr2 16453219 16453220 - SC-3_LTR 5748 0.0010 (3/2989) 0 * * Os_TE_533210 Chr2 16440099 16431569 - MuDR3_OS 8604 0.2110 (625/2962) 1 Intact Os_TE_533204 Os_TE_533204 Chr2 16431565 16440099 + MuDR3_OS 8604 0.2044 (601/2940) 1 Intact Os_TE_533210 Os_TE_533195 Chr2 16426131 16426130 - ORSgTEMT03000049 380 0.0012 (1/804) -1 * * Os_TE_533185 Chr2 16419262 16419263 - TRUNCATOR2_LTR 2904 0.2538 (759/2990) 0 * Os_TE_533184 Os_TE_533184 Chr2 16419258 16419257 + ORSiCMCM00100019 2717 0.2509 (750/2989) 0 * Os_TE_533185 Os_TE_533143 Chr2 16390980 16390979 - TRUNCATOR2_LTR 2904 0.0003 (1/2960) 0 * * Os_TE_533130 Chr2 16386576 16386575 - ORSgTETN00200001 10994 0.0003 (1/2978) 0 * * Os_TE_533116 Chr2 16385610 16385611 + ORSgTEMT00900079 241 0.0003 (1/2929) 0 * * Os_TE_533101 Chr2 16384490 16384491 + RIRE2_LTR 11306 0.0003 (1/2972) 0 * * Os_TE_533068 Chr2 16371989 16371990 + ORSiTERTOOT00269 10834 0.0004 (1/2497) 0 * * Os_TE_533066 Chr2 16371475 16371476 + RETRO1_LTR 8314 0.1347 (398/2954) 0 * Os_TE_533065 Os_TE_533065 Chr2 16371471 16371470 - RETRO1_LTR 8314 0.1351 (400/2960) 0 * Os_TE_533066 Os_TE_533047 Chr2 16359604 16359605 - ORSiTETNOOT00130 2164 0.0003 (1/2985) 0 * * Os_TE_533031 Chr2 16353624 16353625 - MUDRN1_OS 764 0.4637 (843/1818) 0 * * Os_TE_532935 Chr2 16309918 16309919 + TRUNCATOR2_LTR 2904 0.0003 (1/2950) 0 * Os_TE_532934 Os_TE_532934 Chr2 16309914 16309913 - TRUNCATOR2_LTR 2904 0.0003 (1/2962) 0 * Os_TE_532935 Os_TE_532886 Chr2 16289384 16297392 + MuDR3_OS 8604 0.3101 (897/2893) 1 Intact * Os_TE_532843 Chr2 16266556 16266557 - COPI2_LTR 4733 0.0003 (1/2999) 0 * * Os_TE_532838 Chr2 16259044 16259045 + MPING 430 0.0004 (1/2798) 0 * Os_TE_532837 Os_TE_532837 Chr2 16259042 16259041 - MPING 430 0.0004 (1/2827) 0 * Os_TE_532838 Os_TE_532825 Chr2 16252214 16252215 - NDNA1TNA_OS 334 0.0003 (1/2952) 0 * * Os_TE_532816 Chr2 16248714 16248715 + COPIA2-LTR_OS 6433 0.0013 (4/2987) 0 * Os_TE_532815 Os_TE_532815 Chr2 16248710 16248709 - COPIA2-LTR_OS 6433 0.0013 (4/2981) 0 * Os_TE_532816 Os_TE_532795 Chr2 16244043 16244042 + STOWAWAY51_OS 246 0.0004 (1/2824) 0 * Os_TE_532794 Os_TE_532794 Chr2 16244037 16244038 - STOWAWAY51_OS 246 0.0003 (1/2896) 0 * Os_TE_532795 Os_TE_532759 Chr2 16227092 16227093 - SZ-22_LTR 4403 0.0003 (1/2976) 0 * Os_TE_532758 Os_TE_532758 Chr2 16227088 16227087 + ORSiTERTOOT00226 792 0.0007 (2/2977) 0 * Os_TE_532759 Os_TE_532754 Chr2 16224785 16224784 + CACTA-D 1038 0.6971 (2044/2932) 0 * Os_TE_532753 Os_TE_532753 Chr2 16224780 16224781 - CACTA-I 1124 0.6907 (1996/2890) 0 * Os_TE_532754 Os_TE_532722 Chr2 16217222 16216604 - DS-RICE2N 613 0.3157 (945/2993) 1 Intact Os_TE_532720 Os_TE_532720 Chr2 16216604 16217222 + DS-RICE2N 613 0.3125 (934/2989) 1 Intact Os_TE_532722 Os_TE_532692 Chr2 16200695 16200694 + ORSgTEMT00502025 149 0.0010 (3/2989) 0 * * Os_TE_532660 Chr2 16191305 16191306 + ORSiTEMT00300001 383 0.5497 (1620/2947) 0 * * Os_TE_532583 Chr2 16152535 16152534 + ORSgTEMT01400031 216 0.0356 (106/2979) 0 * Os_TE_532582 Os_TE_532582 Chr2 16152532 16152533 + ORSgTEMT01400031 216 0.0375 (112/2990) 0 * Os_TE_532583 Os_TE_532571 Chr2 16145428 16145429 - ORSgTETN00200001 10994 0.0134 (40/2994) 0 * Os_TE_532570 Os_TE_532570 Chr2 16145426 16145425 + SPMLIKE 10989 0.0127 (38/2990) 0 * Os_TE_532571 Os_TE_532543 Chr2 16129285 16129286 + NDNA2TNA_OS 346 0.6845 (1931/2821) 0 * Os_TE_532542 Os_TE_532542 Chr2 16129284 16129283 - NDNA2TNA_OS 346 0.5796 (1005/1734) 0 * Os_TE_532543 Os_TE_532526 Chr2 16124657 16124658 + ORSgTEMT00700017 386 0.0003 (1/2979) 0 * * Os_TE_532521 Chr2 16124174 16124175 + COPI2_LTR 4733 0.0010 (3/2961) 0 * Os_TE_532520 Os_TE_532520 Chr2 16124170 16124169 - COPI2_LTR 4733 0.0010 (3/2964) 0 * Os_TE_532521 Os_TE_532497 Chr2 16117431 16117432 - ORSgTEMT00501356 145 0.0003 (1/2990) 0 * * Os_TE_532496 Chr2 16116483 16116484 - ORSgTEMT00700002 381 0.0003 (1/2985) 0 * * Os_TE_532493 Chr2 16114970 16114971 - ORSgTERT00201216 11284 0.5540 (1656/2989) 0 * Os_TE_532492 Os_TE_532492 Chr2 16114966 16114965 - RIRE2_LTR 11306 0.5519 (1648/2986) 0 * Os_TE_532493 Os_TE_532450 Chr2 16087470 16087471 + MuDR3_OS 8604 0.5218 (1438/2756) 0 * Os_TE_532449 Os_TE_532449 Chr2 16087462 16087461 - MuDR3_OS 8604 0.5253 (1472/2802) 0 * Os_TE_532450 Os_TE_532429 Chr2 16078195 16081178 + TRUNCATOR 2918 0.3205 (955/2980) 1 Intact * Os_TE_532404 Chr2 16072888 16072889 + OSTONOR1_LTR 6440 0.0120 (36/2990) 0 * Os_TE_532403 Os_TE_532403 Chr2 16072884 16072883 - OSTONOR1_LTR 6440 0.0120 (36/2993) 0 * Os_TE_532404 Os_TE_532299 Chr2 16033716 16033717 - MERMITE-17 2759 0.0014 (4/2962) 0 * * Os_TE_532298 Chr2 16033202 16033203 + ORSgTETNOOT00908 242 0.0017 (5/2974) 0 * * Os_TE_532297 Chr2 16033062 16031855 - SZLTR 1249 0.3202 (943/2945) 1 Intact * Os_TE_532278 Chr2 16020298 16021504 + SZLTR 1249 0.3156 (927/2937) 1 Intact * Os_TE_532276 Chr2 16019679 16019678 + ORSgTEMT00100428 339 0.0013 (4/2998) 0 * Os_TE_532275 Os_TE_532275 Chr2 16019677 16019678 + ORSgTEMT00101341 314 0.0013 (4/2997) 0 * Os_TE_532276 Os_TE_532273 Chr2 16019175 16019176 - ORSgTETN00200001 10994 0.0338 (101/2991) 0 * Os_TE_532272 Os_TE_532272 Chr2 16019173 16019172 + SPMLIKE 10989 0.0341 (102/2992) 0 * Os_TE_532273 Os_TE_532246 Chr2 16015132 16015133 + RIREX_LTR 8828 0.5660 (1673/2956) 0 * Os_TE_532245 Os_TE_532245 Chr2 16015128 16015127 - RIREX_LTR 8828 0.5708 (1693/2966) 0 * Os_TE_532246 Os_TE_532182 Chr2 15979212 15979211 + CACTA-B 1103 0.0248 (73/2944) 0 * * Os_TE_532179 Chr2 15978937 15978936 + ORSiTERTOOT00034 791 0.0017 (4/2416) 0 * * Os_TE_532174 Chr2 15974316 15974317 + ORSiTERTOOT00296 5553 0.0284 (83/2926) 0 * Os_TE_532173 Os_TE_532173 Chr2 15974312 15974311 - SC-3_LTR 5748 0.0279 (82/2934) 0 * Os_TE_532174 Os_TE_532149 Chr2 15957865 15957864 - SC-8_LTR 4951 0.0003 (1/2989) 0 * * Os_TE_532013 Chr2 15885895 15885896 - ORSgTEMT00700002 381 0.0004 (1/2841) 0 * * Os_TE_532000 Chr2 15875751 15875752 - COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * * Os_TE_531995 Chr2 15870798 15870797 + SC-8_LTR 4951 0.0013 (4/2984) 0 * * Os_TE_531993 Chr2 15868936 15868937 - SC-3_LTR 5748 0.0003 (1/2939) 0 * Os_TE_531992 Os_TE_531992 Chr2 15868932 15868931 + ORSiTERTOOT00296 5553 0.0003 (1/2940) 0 * Os_TE_531993 Os_TE_531966 Chr2 15863917 15863918 + STOWAWAY44_OS 240 0.0014 (4/2914) 0 * * Os_TE_531936 Chr2 15853657 15853658 - SC-8_LTR 4951 0.0003 (1/2979) 0 * Os_TE_531935 Os_TE_531935 Chr2 15853653 15853652 + SC-8_LTR 4951 0.0003 (1/2978) 0 * Os_TE_531936 Os_TE_531889 Chr2 15824919 15824920 + ORSiTERTOOT00226 792 0.0003 (1/2997) 0 * Os_TE_531888 Os_TE_531888 Chr2 15824915 15824914 - SZ-22_LTR 4403 0.0003 (1/2997) 0 * Os_TE_531889 Os_TE_531830 Chr2 15794645 15794646 + TNR8-21 428 0.0003 (1/2927) 0 * * Os_TE_531813 Chr2 15790192 15790193 + ORSiTERTOOT00296 5553 0.0003 (1/2998) 0 * * Os_TE_531776 Chr2 15778549 15778550 - RIREX_LTR 8828 0.0003 (1/2961) 0 * Os_TE_531775 Os_TE_531775 Chr2 15778545 15778544 + RIREX_LTR 8828 0.0003 (1/2951) 0 * Os_TE_531776 Os_TE_531774 Chr2 15778342 15778343 + RETRO1_LTR 8314 0.0003 (1/2931) 0 * * Os_TE_531762 Chr2 15772746 15772747 - SC-3_LTR 5748 0.0020 (6/2996) 0 * Os_TE_531761 Os_TE_531761 Chr2 15772742 15772741 + ORSiTERTOOT00296 5553 0.0020 (6/2996) 0 * Os_TE_531762 Os_TE_531754 Chr2 15769047 15769046 - TRUNCATOR2_LTR 2904 0.0412 (118/2864) 0 * * Os_TE_531732 Chr2 15760644 15760645 - COPIA2-LTR_OS 6433 0.0003 (1/2866) 0 * Os_TE_531731 Os_TE_531731 Chr2 15760640 15760639 + COPIA2-LTR_OS 6433 0.0003 (1/2950) 0 * Os_TE_531732 Os_TE_531676 Chr2 15739227 15739228 - COPIA2-LTR_OS 6433 0.0004 (1/2820) 0 * Os_TE_531675 Os_TE_531675 Chr2 15739223 15739222 + COPIA2-LTR_OS 6433 0.0004 (1/2777) 0 * Os_TE_531676 Os_TE_531656 Chr2 15734213 15734212 + ORSgTEMT01601591 242 0.0007 (2/2994) 0 * Os_TE_531655 Os_TE_531655 Chr2 15734207 15734208 + STOWAWAY51_OS 246 0.0007 (2/2993) 0 * Os_TE_531656 Os_TE_531654 Chr2 15734184 15734185 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_531653 Os_TE_531653 Chr2 15734180 15734179 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_531654 Os_TE_531647 Chr2 15726055 15726056 + TWIFB1 3737 0.0004 (1/2571) 0 * * Os_TE_531632 Chr2 15719729 15719730 - RIREX_LTR 8828 0.0064 (19/2952) 0 * Os_TE_531631 Os_TE_531631 Chr2 15719725 15719724 + RIREX_LTR 8828 0.0071 (21/2956) 0 * Os_TE_531632 Os_TE_531617 Chr2 15714456 15714457 - SZ-46LTR 3360 0.0003 (1/2988) 0 * * Os_TE_531604 Chr2 15705736 15705737 - STOWAWAY44_OS 240 0.0049 (7/1437) -1 * * Os_TE_531585 Chr2 15697818 15697819 + MPING 430 0.0003 (1/2995) 0 * Os_TE_531584 Os_TE_531584 Chr2 15697816 15697815 - MPING 430 0.0003 (1/2998) 0 * Os_TE_531585 Os_TE_531581 Chr2 15697237 15697238 + COPI2_LTR 4733 0.0021 (6/2898) 0 * Os_TE_531580 Os_TE_531580 Chr2 15697233 15697232 - COPI2_LTR 4733 0.0038 (11/2905) 0 * Os_TE_531581 Os_TE_531579 Chr2 15697152 15697153 - ORSgTETN00200001 10994 0.6180 (1846/2987) 0 * Os_TE_531578 Os_TE_531578 Chr2 15697150 15697149 + SPMLIKE 10989 0.5983 (1711/2860) 0 * Os_TE_531579 Os_TE_531576 Chr2 15696420 15696419 + COPIA2-LTR_OS 6433 0.0024 (7/2978) 0 * * Os_TE_531564 Chr2 15692309 15692308 + ENSPM6_OS 9815 0.0003 (1/2989) 0 * * Os_TE_531547 Chr2 15685298 15685299 + CACTA-H 1152 0.0003 (1/2928) 0 * * Os_TE_531540 Chr2 15683389 15683388 + TRUNCATOR 2918 0.6119 (1802/2945) 0 * Os_TE_531539 Os_TE_531539 Chr2 15683388 15683389 - TRUNCATOR 2918 0.6197 (1853/2990) 0 * Os_TE_531540 Os_TE_531489 Chr2 15662105 15662106 + ORSiTEMT03300001 145 0.0010 (3/2981) 0 * * Os_TE_531478 Chr2 15656740 15656741 + ORSiCMCM00100019 2717 0.0067 (20/2976) 0 * * Os_TE_531471 Chr2 15653056 15653055 - SC-8_LTR 4951 0.0003 (1/2980) 0 * * Os_TE_531418 Chr2 15637509 15637510 - SZ-22_LTR 4403 0.0013 (4/2993) 0 * Os_TE_531417 Os_TE_531417 Chr2 15637505 15637504 + ORSiTERTOOT00226 792 0.0013 (4/2996) 0 * Os_TE_531418 Os_TE_531374 Chr2 15620535 15620534 - RIRE2_LTR 11306 0.0010 (3/2989) 0 * * Os_TE_531373 Chr2 15619343 15619344 + OSTE33 1012 0.0027 (8/2996) 0 * Os_TE_531372 Os_TE_531372 Chr2 15619334 15619333 - OSTE33 1012 0.0027 (8/2993) 0 * Os_TE_531373 Os_TE_531335 Chr2 15592744 15592743 - INDITTO 263 0.6319 (1876/2969) 0 * * Os_TE_531308 Chr2 15577518 15577519 + ORSiTERTOOT00226 792 0.0003 (1/2985) 0 * * Os_TE_531284 Chr2 15558594 15558595 - SPMLIKE 10989 0.0013 (4/2967) 0 * Os_TE_531283 Os_TE_531283 Chr2 15558592 15558591 + SPMLIKE 10989 0.0017 (5/2974) 0 * Os_TE_531284 Os_TE_531254 Chr2 15542349 15542350 + ENSPM4_OS 11610 0.0010 (3/2923) 0 * * Os_TE_531253 Chr2 15542098 15542099 - COPIA2-LTR_OS 6433 0.0017 (5/2965) 0 * * Os_TE_531181 Chr2 15506682 15506683 + RIREX_LTR 8828 0.0007 (2/2994) 0 * Os_TE_531180 Os_TE_531180 Chr2 15506678 15506677 - RIREX_LTR 8828 0.0007 (2/2994) 0 * Os_TE_531181 Os_TE_531162 Chr2 15491068 15491067 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * * Os_TE_531153 Chr2 15489314 15489313 + NDNA1TNA_OS 334 0.0003 (1/2987) 0 * * Os_TE_531128 Chr2 15486621 15486353 + ORSgTEMT06100010 269 0.4200 (1018/2424) 1 Intact Os_TE_531127 Os_TE_531127 Chr2 15486353 15486621 - ORSgTEMT06100010 269 0.3782 (1005/2657) 1 Intact Os_TE_531128 Os_TE_531126 Chr2 15486220 15486221 + TNR2A 152 0.0072 (20/2784) 0 * * Os_TE_531082 Chr2 15457843 15457842 + TRUNCATOR 2918 0.6809 (2038/2993) 0 * Os_TE_531081 Os_TE_531081 Chr2 15457842 15457843 - TRUNCATOR 2918 0.6704 (1983/2958) 0 * Os_TE_531082 Os_TE_531073 Chr2 15454469 15454468 - OSMU5 4881 0.0062 (18/2898) 0 * * Os_TE_531057 Chr2 15441685 15441686 - SC-3_LTR 5748 0.0003 (1/2977) 0 * * Os_TE_531055 Chr2 15441368 15441369 - MPING 430 0.0003 (1/2977) 0 * Os_TE_531054 Os_TE_531054 Chr2 15441366 15441365 + MPING 430 0.0003 (1/2980) 0 * Os_TE_531055 Os_TE_531038 Chr2 15435917 15435918 - INDITTO 263 0.6830 (2027/2968) 0 * Os_TE_531037 Os_TE_531037 Chr2 15435915 15435914 + ORSgTETNOOT02213 263 0.6801 (2011/2957) 0 * Os_TE_531038 Os_TE_530960 Chr2 15408301 15408300 - TRUNCATOR 2918 0.0317 (95/2996) 0 * Os_TE_530959 Os_TE_530959 Chr2 15408300 15408301 + TRUNCATOR 2918 0.0331 (99/2995) 0 * Os_TE_530960 Os_TE_530930 Chr2 15395434 15395435 - COPIA2-LTR_OS 6433 0.0010 (3/2981) 0 * Os_TE_530929 Os_TE_530929 Chr2 15395430 15395429 + COPIA2-LTR_OS 6433 0.0010 (3/2989) 0 * Os_TE_530930 Os_TE_530915 Chr2 15392266 15392267 - SZ-22_LTR 4403 0.0010 (3/2909) 0 * Os_TE_530914 Os_TE_530914 Chr2 15392262 15392261 + ORSiTERTOOT00226 792 0.0010 (3/2899) 0 * Os_TE_530915 Os_TE_530912 Chr2 15391280 15391279 - SZ-22_LTR 4403 0.0021 (6/2921) 0 * * Os_TE_530801 Chr2 15326560 15326561 - OLO24 345 0.0003 (1/2967) 0 * Os_TE_530800 Os_TE_530800 Chr2 15326558 15326557 + OLO24 345 0.0003 (1/2969) 0 * Os_TE_530801 Os_TE_530794 Chr2 15326090 15326089 + TRSA_OS 353 0.0003 (1/2930) 0 * * Os_TE_530756 Chr2 15311344 15311345 - STOWAWAY51_OS 246 0.0057 (17/2975) 0 * * Os_TE_530579 Chr2 15241611 15241610 - RIRE3A_LTR 10580 0.0302 (89/2944) 0 * * Os_TE_530555 Chr2 15230897 15227359 + JOUZHENA 607 0.3207 (957/2984) 1 Intact Os_TE_530554 Os_TE_530554 Chr2 15227359 15230897 - JOUZHENA 607 0.3234 (967/2990) 1 Intact Os_TE_530555 Os_TE_530528 Chr2 15214527 15214528 - RIRE2_LTR 11306 0.0018 (5/2850) 0 * * Os_TE_530510 Chr2 15205595 15205596 + RIRE2_LTR 11306 0.0003 (1/2964) 0 * * Os_TE_530457 Chr2 15186084 15186085 - TRUNCATOR2_LTR 2904 0.0003 (1/2952) 0 * * Os_TE_530455 Chr2 15185326 15185325 + STOWAWAY51_OS 246 0.0007 (2/2912) 0 * Os_TE_530454 Os_TE_530454 Chr2 15185320 15185321 + ORSgTEMT01601591 242 0.0007 (2/2916) 0 * Os_TE_530455 Os_TE_530430 Chr2 15174216 15174215 - RIRE2_LTR 11306 0.0003 (1/2956) 0 * * Os_TE_530384 Chr2 15149818 15149678 - TELIA 141 0.0737 (212/2877) 1 Intact Os_TE_530383 Os_TE_530383 Chr2 15149678 15149818 + TELIA 141 0.0759 (219/2885) 1 Intact Os_TE_530384 Os_TE_530374 Chr2 15148910 15148911 - ORSiTERTOOT00074 4935 0.0003 (1/2997) 0 * * Os_TE_530349 Chr2 15137467 15137468 - SZ-22_LTR 4403 0.0003 (1/2979) 0 * * Os_TE_530336 Chr2 15133578 15133579 + RIREX_LTR 8828 0.0070 (21/2982) 0 * Os_TE_530335 Os_TE_530335 Chr2 15133574 15133573 - RIREX_LTR 8828 0.0070 (21/2983) 0 * Os_TE_530336 Os_TE_530329 Chr2 15129919 15129920 - RIRE2_LTR 11306 0.6511 (1952/2998) 0 * * Os_TE_530326 Chr2 15128580 15128579 + TRUNCATOR 2918 0.0020 (6/2990) 0 * Os_TE_530325 Os_TE_530325 Chr2 15128579 15128580 - TRUNCATOR 2918 0.0020 (6/2986) 0 * Os_TE_530326 Os_TE_530321 Chr2 15127438 15127439 + ORSiCMCM00100019 2717 0.0066 (19/2886) 0 * * Os_TE_530164 Chr2 15058975 15058976 + RIRE3_LTR 12054 0.6745 (2006/2974) 0 * Os_TE_530163 Os_TE_530163 Chr2 15058971 15058970 - RIRE3_LTR 12054 0.6697 (1969/2940) 0 * Os_TE_530164 Os_TE_530152 Chr2 15052616 15052615 - RETRO2_LTR 12874 0.0070 (21/2984) 0 * * Os_TE_530139 Chr2 15048717 15048716 + ENSPM4_OS 11610 0.0003 (1/2987) 0 * * Os_TE_530134 Chr2 15045906 15045907 - RIREX_LTR 8828 0.0030 (9/2954) 0 * Os_TE_530133 Os_TE_530133 Chr2 15045902 15045901 + RIREX_LTR 8828 0.0030 (9/2959) 0 * Os_TE_530134 Os_TE_530127 Chr2 15042628 15042629 - TRUNCATOR2_LTR 2904 0.0003 (1/2993) 0 * * Os_TE_530125 Chr2 15041707 15041708 + TRUNCATOR 2918 0.0314 (94/2993) 0 * * Os_TE_530072 Chr2 15015963 15015964 - ORSiTERT00200154 9386 0.6460 (1918/2969) 0 * * Os_TE_529947 Chr2 14955857 14955858 + ORSiTERTOOT00258 4258 0.0003 (1/2924) 0 * * Os_TE_529933 Chr2 14948136 14948135 + ORSiTERTOOT00043 741 0.0012 (1/816) -1 * * Os_TE_529835 Chr2 14899857 14899856 + RIREX_LTR 8828 0.0011 (3/2768) 0 * * Os_TE_529763 Chr2 14860124 14860125 + TRUNCATOR 2918 0.0310 (93/2997) 0 * * Os_TE_529761 Chr2 14859337 14859336 + TRUNCATOR 2918 0.0073 (22/2995) 0 * Os_TE_529760 Os_TE_529760 Chr2 14859336 14859337 - TRUNCATOR 2918 0.0154 (17/1101) 0 * Os_TE_529761 Os_TE_529759 Chr2 14859317 14859318 + ORSiCMCM00100019 2717 0.0009 (1/1115) 0 * Os_TE_529758 Os_TE_529758 Chr2 14859313 14859312 - TRUNCATOR2_LTR 2904 0.0018 (2/1100) 0 * Os_TE_529759 Os_TE_529753 Chr2 14855681 14855680 + ORSiCMCM00100015 9077 0.0588 (21/357) -1 * * Os_TE_529691 Chr2 14831727 14831728 + ORSiCMCM00100019 2717 0.0007 (2/2981) 0 * * Os_TE_529678 Chr2 14828041 14828042 + MPING 430 0.0018 (5/2786) 0 * Os_TE_529677 Os_TE_529677 Chr2 14828039 14828038 - MPING 430 0.0018 (5/2721) 0 * Os_TE_529678 Os_TE_529629 Chr2 14811614 14800110 - RIRE3A_LTR 10580 0.3236 (967/2988) 1 Intact Os_TE_529622 Os_TE_529622 Chr2 14800110 14811614 + RIRE3A_LTR 10580 0.3203 (952/2972) 1 Intact Os_TE_529629 Os_TE_529617 Chr2 14798946 14798947 - COPIA2-LTR_OS 6433 0.0027 (8/2956) 0 * Os_TE_529616 Os_TE_529616 Chr2 14798942 14798941 + COPIA2-LTR_OS 6433 0.0027 (8/2968) 0 * Os_TE_529617 Os_TE_529435 Chr2 14749692 14749693 + ORSiTERTOOT00028 8600 0.0003 (1/2885) 0 * Os_TE_529434 Os_TE_529434 Chr2 14749688 14749687 - TRUNCATOR2_LTR 2904 0.0007 (2/2888) 0 * Os_TE_529435 Os_TE_529394 Chr2 14729823 14734997 - COPI2_LTR 4733 0.3245 (969/2986) 1 Intact * Os_TE_529366 Chr2 14721881 14721880 + ORSgTETN00200005 1121 0.0058 (17/2931) 0 * Os_TE_529365 Os_TE_529365 Chr2 14721880 14721881 + CACTA-H 1152 0.0068 (20/2934) 0 * Os_TE_529366 Os_TE_529293 Chr2 14698112 14698111 + RIREX_LTR 8828 0.0003 (1/2984) 0 * * Os_TE_529292 Chr2 14697924 14697925 + STOWAWAY51_OS 246 0.0003 (1/2995) 0 * * Os_TE_529254 Chr2 14679677 14679678 + COPIA2-LTR_OS 6433 0.0003 (1/2986) 0 * Os_TE_529253 Os_TE_529253 Chr2 14679673 14679672 - COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_529254 Os_TE_529232 Chr2 14676798 14676797 - ORSiTEMT01100035 500 0.0004 (1/2771) 0 * * Os_TE_529210 Chr2 14672406 14672407 - SUSU 279 0.0017 (5/2919) 0 * Os_TE_529209 Os_TE_529209 Chr2 14672404 14672403 + ORSgTEMT05000092 279 0.0017 (5/2934) 0 * Os_TE_529210 Os_TE_529077 Chr2 14623135 14623134 - SZ-62LTR 3649 0.0006 (1/1578) 0 * * Os_TE_529069 Chr2 14621686 14621687 - TRUNCATOR2_LTR 2904 0.0003 (1/2954) 0 * Os_TE_529068 Os_TE_529068 Chr2 14621682 14621681 + ORSiTERTOOT00028 8600 0.0003 (1/2956) 0 * Os_TE_529069 Os_TE_529056 Chr2 14619432 14619431 + ORSiTERTOOT00226 792 0.0003 (1/2940) 0 * * Os_TE_528991 Chr2 14599466 14599467 + TNR11 811 0.0007 (2/2986) 0 * * Os_TE_528990 Chr2 14599322 14599323 - MPING 430 0.0017 (5/2996) 0 * Os_TE_528989 Os_TE_528989 Chr2 14599320 14599319 + MPING 430 0.0017 (5/2996) 0 * Os_TE_528990 Os_TE_528945 Chr2 14584767 14584768 - RIRE3A_LTR 10580 0.0008 (1/1214) 0 * * Os_TE_528944 Chr2 14584756 14584757 - TRUNCATOR2_LTR 2904 0.0047 (9/1909) 0 * * Os_TE_528886 Chr2 14564508 14564509 + RIREX_LTR 8828 0.0045 (13/2919) 0 * * Os_TE_528880 Chr2 14562881 14562882 - TRUNCATOR2_LTR 2904 0.6519 (1944/2982) 0 * Os_TE_528879 Os_TE_528879 Chr2 14562877 14562876 + ORSiCMCM00100019 2717 0.6403 (1873/2925) 0 * Os_TE_528880 Os_TE_528878 Chr2 14562841 14562840 + RIREX_LTR 8828 0.0007 (2/2880) 0 * * Os_TE_528864 Chr2 14558913 14558914 + ORSiTERTOOT00097 759 0.0003 (1/2993) 0 * Os_TE_528863 Os_TE_528863 Chr2 14558909 14558908 - SZ-22_LTR 4403 0.0003 (1/2993) 0 * Os_TE_528864 Os_TE_528828 Chr2 14542876 14546284 + ORSiCMCM00100019 2717 0.3116 (902/2895) 1 Intact * Os_TE_528786 Chr2 14524489 14524488 + ORSiTERTOOT00028 8600 0.6446 (1895/2940) 0 * * Os_TE_528757 Chr2 14512993 14512994 + RIRE2_LTR 11306 0.0003 (1/2990) 0 * * Os_TE_528755 Chr2 14512370 14512369 - INDITTO 263 0.0003 (1/2957) 0 * * Os_TE_528746 Chr2 14506456 14506457 + INDITTO 263 0.0010 (3/2996) 0 * Os_TE_528745 Os_TE_528745 Chr2 14506454 14506453 - INDITTO 263 0.0010 (3/2997) 0 * Os_TE_528746 Os_TE_528705 Chr2 14494525 14494524 - RIREX_LTR 8828 0.0003 (1/2981) 0 * * Os_TE_528608 Chr2 14468535 14459676 + EnSpm-15_OS 8871 0.3219 (963/2992) 1 Intact Os_TE_528607 Os_TE_528607 Chr2 14459676 14468535 - EnSpm-15_OS 8871 0.3195 (952/2980) 1 Intact Os_TE_528608 Os_TE_528606 Chr2 14459527 14459528 - SZ-22_LTR 4403 0.0003 (1/2980) 0 * Os_TE_528605 Os_TE_528605 Chr2 14459523 14459522 + ORSiTERTOOT00226 792 0.0003 (1/2986) 0 * Os_TE_528606 Os_TE_528546 Chr2 14443938 14443939 - TRUNCATOR2_LTR 2904 0.0018 (5/2846) 0 * * Os_TE_528476 Chr2 14418935 14418934 - TRUNCATOR 2918 0.0007 (2/2981) 0 * Os_TE_528475 Os_TE_528475 Chr2 14418934 14418935 + TRUNCATOR 2918 0.0020 (6/2987) 0 * Os_TE_528476 Os_TE_528474 Chr2 14417677 14417678 + ORSiTERTOOT00027 10853 0.0070 (21/2987) 0 * * Os_TE_528472 Chr2 14416897 14416898 - RIRE3_LTR 12054 0.0017 (5/2990) 0 * * Os_TE_528441 Chr2 14394790 14394791 + RIRE3A_LTR 10580 0.0009 (1/1158) 0 * * Os_TE_528283 Chr2 14339074 14339075 + RIRE3_LTR 12054 0.0013 (4/2997) 0 * * Os_TE_528278 Chr2 14336378 14336379 + TELIA 141 0.0007 (2/2845) 0 * Os_TE_528277 Os_TE_528277 Chr2 14336375 14336374 - TELIA 141 0.0003 (1/2876) 0 * Os_TE_528278 Os_TE_528272 Chr2 14335365 14335366 + COWARD-3 221 0.0006 (1/1635) -1 * * Os_TE_528264 Chr2 14331294 14331293 - TYPEM 227 0.0003 (1/2998) 0 * Os_TE_528263 Os_TE_528263 Chr2 14331293 14331294 - ORSgTEMT02400246 177 0.0003 (1/2996) 0 * Os_TE_528264 Os_TE_528262 Chr2 14330519 14330518 + SZ-22_LTR 4403 0.0007 (2/2992) 0 * * Os_TE_528209 Chr2 14307033 14307032 - TRUNCATOR 2918 0.6437 (1881/2922) 0 * * Os_TE_528052 Chr2 14160899 14160900 + AMYLTP 383 0.0007 (2/2922) 0 * Os_TE_528051 Os_TE_528051 Chr2 14160891 14160890 - AMYLTP 383 0.0007 (2/2920) 0 * Os_TE_528052 Os_TE_528038 Chr2 14153855 14153854 - TRUNCATOR 2918 0.6371 (1847/2899) 0 * * Os_TE_528035 Chr2 14153032 14153031 + F118 179 0.0005 (1/1992) 0 * * Os_TE_528029 Chr2 14152413 14152412 + TRUNCATOR2_LTR 2904 0.0307 (91/2968) 0 * * Os_TE_528001 Chr2 14145155 14145154 - TRUNCATOR2_LTR 2904 0.1610 (445/2764) 0 * * Os_TE_527996 Chr2 14140219 14140218 + ORSiTERTOOT00034 791 0.0003 (1/2982) 0 * * Os_TE_527990 Chr2 14138215 14138216 + SZ-40LTR 2465 0.0327 (91/2781) 0 * * Os_TE_527987 Chr2 14137280 14137279 - OSLINE1-2 7128 0.0301 (90/2991) 0 * * Os_TE_527966 Chr2 14126683 14126684 - SC-8_LTR 4951 0.0010 (3/2908) 0 * Os_TE_527965 Os_TE_527965 Chr2 14126679 14126678 + SC-8_LTR 4951 0.0010 (3/2991) 0 * Os_TE_527966 Os_TE_527853 Chr2 14088920 14088919 + TRUNCATOR 2918 0.6460 (1898/2938) 0 * * Os_TE_527800 Chr2 14071657 14061459 - RIRE3_LTR 12054 0.3261 (972/2981) 1 Intact * Os_TE_527761 Chr2 14054547 14054546 + RETRO1_LTR 8314 0.0007 (2/2978) 0 * * Os_TE_527755 Chr2 14052715 14052714 + RIREX_LTR 8828 0.0003 (1/2998) 0 * * Os_TE_527648 Chr2 14004332 14004333 + RETRO2A_LTR 12895 0.0070 (21/2987) 0 * * Os_TE_527599 Chr2 13991334 13991333 + MDR2 6967 0.0003 (1/2983) 0 * * Os_TE_527597 Chr2 13991288 13991289 + GYPSY-A_LTR 8951 0.0007 (2/2981) 0 * Os_TE_527596 Os_TE_527596 Chr2 13991284 13991283 - GYPSY-A_LTR 8951 0.0010 (3/2979) 0 * Os_TE_527597 Os_TE_527494 Chr2 13948715 13948716 - AMYLTP 383 0.6454 (1922/2978) 0 * Os_TE_527493 Os_TE_527493 Chr2 13948707 13948706 + AMYLTP 383 0.6458 (1920/2973) 0 * Os_TE_527494 Os_TE_527420 Chr2 13930485 13930486 - SZ-22_LTR 4403 0.0003 (1/2958) 0 * * Os_TE_527257 Chr2 13859885 13859886 - RETROSAT2LTR 12796 0.0780 (102/1307) 0 * * Os_TE_527243 Chr2 13853106 13853107 - SZ-67LTR 1540 0.0007 (2/2954) 0 * Os_TE_527242 Os_TE_527242 Chr2 13853102 13853101 + SZ-67LTR 1540 0.0007 (2/2956) 0 * Os_TE_527243 Os_TE_527240 Chr2 13852966 13852965 + ORSiTERTOOT00226 792 0.0007 (2/2982) 0 * * Os_TE_527171 Chr2 13829683 13824874 - RETROFIT5_LTR 4785 0.3228 (963/2983) 1 Intact Os_TE_527170 Os_TE_527170 Chr2 13824874 13829683 + RETROFIT5_LTR 4785 0.3253 (971/2985) 1 Intact Os_TE_527171 Os_TE_527034 Chr2 13765967 13765966 - SZ-22_LTR 4403 0.0003 (1/2991) 0 * * Os_TE_527020 Chr2 13761077 13761078 + ORSiTERTOOT00034 791 0.0003 (1/2987) 0 * * Os_TE_527015 Chr2 13759176 13759177 - AMYLTP 383 0.0010 (3/2988) 0 * Os_TE_527014 Os_TE_527014 Chr2 13759168 13759167 + AMYLTP 383 0.0010 (3/2990) 0 * Os_TE_527015 Os_TE_526796 Chr2 13606350 13606351 + RIREX_LTR 8828 0.0007 (2/2860) 0 * * Os_TE_526752 Chr2 13597447 13597446 + ORSiTERTOOT00226 792 0.0007 (2/2994) 0 * * Os_TE_526601 Chr2 13532396 13532395 - TRUNCATOR2_LTR 2904 0.6474 (1935/2989) 0.04 * * Os_TE_526594 Chr2 13529042 13529043 + CRM-LTR_OS 7749 0.0003 (1/2985) 0 * * Os_TE_526501 Chr2 13495426 13495427 + TESS 244 0.0003 (1/2985) 0 * Os_TE_526500 Os_TE_526500 Chr2 13495419 13495418 - TESS 244 0.0003 (1/2983) 0 * Os_TE_526501 Os_TE_526497 Chr2 13494156 13494157 + INDITTO 263 0.6885 (2038/2960) 0 * Os_TE_526496 Os_TE_526496 Chr2 13494154 13494153 + ORSgTETNOOT02406 265 0.6720 (1895/2820) 0 * Os_TE_526497 Os_TE_526419 Chr2 13464433 13464434 + TRUNCATOR 2918 0.4632 (107/231) -1 * * Os_TE_526332 Chr2 13422281 13422282 - ORSiTEMT01000008 242 0.0070 (21/2989) 0 * * Os_TE_526328 Chr2 13420571 13420572 - STOWAWAY51_OS 246 0.0003 (1/2942) 0 * * Os_TE_526303 Chr2 13408524 13408523 - CRM-LTR_OS 7749 0.0003 (1/2981) 0 * * Os_TE_526269 Chr2 13401359 13401109 - ORSgTETNOOT02565 240 0.3217 (930/2891) 1 Intact * Os_TE_526255 Chr2 13396769 13396770 - SZ-22_LTR 4403 0.0003 (1/2986) 0 * * Os_TE_526176 Chr2 13373219 13373218 + F770 284 0.0067 (19/2836) 0 * * Os_TE_526164 Chr2 13371766 13371767 + ORSgTETNOOT00012 241 0.0195 (58/2978) 0 * * Os_TE_526132 Chr2 13349852 13349853 + TWIF 586 0.0094 (27/2885) 0 * Os_TE_526131 Os_TE_526131 Chr2 13349845 13349844 - ORSiTETNOOT00134 607 0.0111 (32/2889) 0 * Os_TE_526132 Os_TE_526096 Chr2 13337275 13337276 + INDITTO 263 0.0020 (6/2995) 0 * * Os_TE_526035 Chr2 13317495 13317496 - RETRO2A_LTR 12895 0.0074 (22/2984) 0 * * Os_TE_526001 Chr2 13301522 13301523 + OSTE33 1012 0.0121 (18/1493) -1 * * Os_TE_525966 Chr2 13288282 13288283 - SC-8_LTR 4951 0.0003 (1/2989) 0 * Os_TE_525965 Os_TE_525965 Chr2 13288278 13288277 + SC-8_LTR 4951 0.0003 (1/2987) 0 * Os_TE_525966 Os_TE_525962 Chr2 13287801 13287802 - SZ-22_LTR 4403 0.0314 (94/2995) 0 * Os_TE_525961 Os_TE_525961 Chr2 13287797 13287796 + ORSiTERTOOT00226 792 0.0324 (97/2997) 0 * Os_TE_525962 Os_TE_525873 Chr2 13253650 13253651 - RIREX_LTR 8828 0.0070 (21/2987) 0 * * Os_TE_525839 Chr2 13244535 13241408 - RETROSAT2LTR 12796 0.3241 (971/2996) 1 Solo_LTR * Os_TE_525832 Chr2 13239797 13239798 - TRUNCATOR2_LTR 2904 0.0072 (21/2909) 0 * Os_TE_525831 Os_TE_525831 Chr2 13239793 13239792 + ORSiCMCM00100019 2717 0.0067 (20/2994) 0 * Os_TE_525832 Os_TE_525814 Chr2 13231746 13231747 - SZ-22_LTR 4403 0.0007 (2/2999) 0 * Os_TE_525813 Os_TE_525813 Chr2 13231742 13231741 + ORSiTERTOOT00226 792 0.0007 (2/2997) 0 * Os_TE_525814 Os_TE_525719 Chr2 13202469 13202470 + SZ-55_LTR 10318 0.0003 (1/2978) 0 * Os_TE_525718 Os_TE_525718 Chr2 13202465 13202464 - SZ-55_LTR 10318 0.0003 (1/2978) 0 * Os_TE_525719 Os_TE_525664 Chr2 13182855 13182854 - SC-3_LTR 5748 0.0003 (1/2999) 0 * * Os_TE_525653 Chr2 13176579 13176580 - SZ-22_LTR 4403 0.0007 (2/2955) 0 * Os_TE_525652 Os_TE_525652 Chr2 13176575 13176574 + ORSiTERTOOT00226 792 0.0007 (2/2958) 0 * Os_TE_525653 Os_TE_525650 Chr2 13172855 13172856 + ORSiTERTOOT00226 792 0.0013 (4/2996) 0 * * Os_TE_525648 Chr2 13172488 13172489 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_525647 Os_TE_525647 Chr2 13172484 13172483 + COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_525648 Os_TE_525638 Chr2 13167339 13167338 - ORSiTERTOOT00074 4935 0.0003 (1/2977) 0 * * Os_TE_525621 Chr2 13162367 13161938 + MPING 430 0.0185 (55/2974) 1 Intact Os_TE_525620 Os_TE_525620 Chr2 13161938 13162367 - MPING 430 0.0191 (57/2978) 1 Intact Os_TE_525621 Os_TE_525604 Chr2 13155598 13155597 - COPI2_LTR 4733 0.0003 (1/2946) 0 * * Os_TE_525576 Chr2 13141950 13141949 + ORSgTETNOOT00012 241 0.0023 (7/2983) 0 * * Os_TE_525572 Chr2 13137511 13137512 + RPO_OS 1983 0.7734 (1870/2418) 0 * Os_TE_525571 Os_TE_525571 Chr2 13137506 13137505 - RPO_OS 1983 0.6452 (1102/1708) 0 * Os_TE_525572 Os_TE_525545 Chr2 13122540 13122541 - SC-8_LTR 4951 0.0004 (1/2563) 0 * Os_TE_525544 Os_TE_525544 Chr2 13122536 13122535 + SC-8_LTR 4951 0.0004 (1/2573) 0 * Os_TE_525545 Os_TE_525496 Chr2 13099540 13099541 + DS-RICE2N 613 0.6859 (2000/2916) 0 * * Os_TE_525476 Chr2 13093955 13093954 + SZ-40LTR 2465 0.0003 (1/2996) 0 * * Os_TE_525426 Chr2 13073161 13076620 - ORSiTERTOOT00250 3262 0.3223 (965/2994) 1 Intact * Os_TE_525365 Chr2 13045592 13045593 - RETROSAT3_LTR 11537 0.0003 (1/2976) 0 * * Os_TE_525358 Chr2 13044735 13044736 + AMYLTP 383 0.0010 (3/2963) 0 * Os_TE_525357 Os_TE_525357 Chr2 13044727 13044726 - AMYLTP 383 0.0010 (3/2962) 0 * Os_TE_525358 Os_TE_525285 Chr2 13016132 13016133 - MPING 430 0.0007 (2/2996) 0 * Os_TE_525284 Os_TE_525284 Chr2 13016130 13016129 + MPING 430 0.0007 (2/2996) 0 * Os_TE_525285 Os_TE_525280 Chr2 13013435 13013436 + OSTE33 1012 0.0324 (97/2990) 0 * Os_TE_525279 Os_TE_525279 Chr2 13013426 13013425 + OSTE33 1012 0.0344 (103/2996) 0 * Os_TE_525280 Os_TE_525250 Chr2 12999800 12999799 - SZ-22_LTR 4403 0.0021 (6/2905) 0 * * Os_TE_525226 Chr2 12993029 12993030 - COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * * Os_TE_525222 Chr2 12991720 12991721 - ORSiTERTOOT00367 5639 0.0844 (253/2999) 0 * Os_TE_525221 Os_TE_525221 Chr2 12991716 12991715 + ORSiTERTOOT00367 5639 0.0820 (246/2999) 0 * Os_TE_525222 Os_TE_525186 Chr2 12979410 12979409 - RIRE2_LTR 11306 0.0003 (1/2987) 0 * * Os_TE_525185 Chr2 12978423 12978424 - ORSgTETN00200001 10994 0.6316 (1829/2896) 0 * Os_TE_525184 Os_TE_525184 Chr2 12978420 12978419 + SPMLIKE 10989 0.6432 (1900/2954) 0 * Os_TE_525185 Os_TE_525177 Chr2 12976172 12976173 + CACTA-B 1103 0.0315 (94/2986) 0 * * Os_TE_525165 Chr2 12970045 12970046 + NDNA1TNA_OS 334 0.0070 (21/2985) 0 * * Os_TE_525035 Chr2 12923179 12923178 + F770 284 0.0071 (21/2977) 0 * * Os_TE_524990 Chr2 12898317 12898318 - RETROSAT2LTR 12796 0.6461 (1922/2975) 0 * * Os_TE_524987 Chr2 12897382 12897383 + JOUZHENA 607 0.0013 (4/2990) 0 * Os_TE_524986 Os_TE_524986 Chr2 12897375 12897374 - JOUZHENA 607 0.0013 (4/2991) 0 * Os_TE_524987 Os_TE_524985 Chr2 12896335 12896336 - ORSgTERT00201216 11284 0.0003 (1/2968) 0 * * Os_TE_524975 Chr2 12895488 12895489 + OSTE33 1012 0.0067 (20/2992) 0 * Os_TE_524974 Os_TE_524974 Chr2 12895479 12895478 + OSTE33 1012 0.0070 (21/2993) 0 * Os_TE_524975 Os_TE_524962 Chr2 12891464 12891465 + MPING 430 0.0161 (48/2985) 0 * Os_TE_524961 Os_TE_524961 Chr2 12891462 12891461 - MPING 430 0.0154 (46/2983) 0 * Os_TE_524962 Os_TE_524915 Chr2 12878525 12878526 - COPIA2-LTR_OS 6433 0.0003 (1/2915) 0 * * Os_TE_524903 Chr2 12873342 12873341 + ORSgTEMT05200164 277 0.0004 (1/2853) 0 * * Os_TE_524893 Chr2 12864845 12864844 - SZ-22_LTR 4403 0.0003 (1/2976) 0 * * Os_TE_524882 Chr2 12859050 12859051 - ORSgTERT00201216 11284 0.0003 (1/2982) 0 * Os_TE_524881 Os_TE_524881 Chr2 12859046 12859045 - RIRE2_LTR 11306 0.0003 (1/2983) 0 * Os_TE_524882 Os_TE_524871 Chr2 12857695 12857696 + ORSiCMCM00100019 2717 0.0068 (20/2953) 0 * Os_TE_524870 Os_TE_524870 Chr2 12857691 12857690 - TRUNCATOR2_LTR 2904 0.0075 (22/2946) 0 * Os_TE_524871 Os_TE_524790 Chr2 12818439 12818440 - OLO24 345 0.0010 (1/986) 0 * Os_TE_524789 Os_TE_524789 Chr2 12818437 12818436 + OLO24 345 0.0010 (1/985) 0 * Os_TE_524790 Os_TE_524785 Chr2 12817378 12817379 - OLO24 345 0.6865 (2043/2976) 0 * Os_TE_524784 Os_TE_524784 Chr2 12817377 12817376 + OLO24 345 0.5565 (1207/2169) 0 * Os_TE_524785 Os_TE_524780 Chr2 12809129 12809128 - TEMPINDAS 4259 0.0130 (39/2996) 0 * * Os_TE_524752 Chr2 12792244 12795219 - TRUNCATOR 2918 0.3132 (926/2957) 1 Intact * Os_TE_524751 Chr2 12792140 12791533 - JOUZHENA 607 0.2614 (727/2781) 1 Intact * Os_TE_524744 Chr2 12791114 12791113 + ORSgTEMT00500070 150 0.0020 (6/2929) 0 * * Os_TE_524740 Chr2 12790259 12790119 - ORSgTEMT00501758 147 0.3281 (977/2978) 1 Intact * Os_TE_524737 Chr2 12789525 12789673 - COWARD-3 221 0.3271 (959/2932) 1 Intact * Os_TE_524736 Chr2 12789261 12789262 + COPIA2-LTR_OS 6433 0.0003 (1/2976) 0 * Os_TE_524735 Os_TE_524735 Chr2 12789257 12789256 - COPIA2-LTR_OS 6433 0.0003 (1/2975) 0 * Os_TE_524736 Os_TE_524719 Chr2 12782208 12782207 - RIRE3_LTR 12054 0.6793 (2025/2981) 0 * * Os_TE_524704 Chr2 12772807 12773042 - ORSgTEMT00100872 257 0.4483 (963/2148) 1 Intact * Os_TE_524702 Chr2 12770883 12770884 - SC-3_LTR 5748 0.0122 (36/2960) 0 * Os_TE_524701 Os_TE_524701 Chr2 12770879 12770878 + ORSiTERTOOT00296 5553 0.0125 (37/2966) 0 * Os_TE_524702 Os_TE_524663 Chr2 12754680 12754681 + ORSgTEMT01601591 242 0.0003 (1/2858) 0 * * Os_TE_524628 Chr2 12740472 12739130 + OSTE33 1012 0.3055 (742/2429) 1 Intact Os_TE_524627 Os_TE_524627 Chr2 12739130 12740472 + OSTE33 1012 0.2211 (480/2171) 1 Intact Os_TE_524628 Os_TE_524570 Chr2 12716340 12716341 - SZ-22_LTR 4403 0.0003 (1/2971) 0 * Os_TE_524569 Os_TE_524569 Chr2 12716336 12716335 + ORSiTERTOOT00034 791 0.0003 (1/2961) 0 * Os_TE_524570 Os_TE_524566 Chr2 12716022 12716023 + ORSgTEMT01600102 237 0.0007 (2/2907) 0 * * Os_TE_524558 Chr2 12713635 12713636 - COPIA2-LTR_OS 6433 0.0030 (9/2985) 0 * Os_TE_524557 Os_TE_524557 Chr2 12713631 12713630 + COPIA2-LTR_OS 6433 0.0030 (9/2988) 0 * Os_TE_524558 Os_TE_524526 Chr2 12695176 12695177 - RETROSAT2LTR 12796 0.6784 (2031/2994) 0 * Os_TE_524525 Os_TE_524525 Chr2 12695174 12695173 + RETROSAT2LTR 12796 0.6679 (1969/2948) 0 * Os_TE_524526 Os_TE_524522 Chr2 12693892 12693893 - CRM-LTR_OS 7749 0.0003 (1/2997) 0 * * Os_TE_524515 Chr2 12691237 12691238 - HARB-1_OS 5166 0.0070 (21/2985) 0 * Os_TE_524514 Os_TE_524514 Chr2 12691235 12691234 + HARB-1_OS 5166 0.0074 (22/2991) 0 * Os_TE_524515 Os_TE_524498 Chr2 12685073 12685074 - COPI2_LTR 4733 0.0003 (1/2993) 0 * Os_TE_524497 Os_TE_524497 Chr2 12685069 12685068 + COPI2_LTR 4733 0.0003 (1/2991) 0 * Os_TE_524498 Os_TE_524493 Chr2 12684054 12683326 - SZ-22_LTR 4403 0.4603 (991/2153) 1 Solo_LTR * Os_TE_524477 Chr2 12681745 12681744 + OSTE14 885 0.0004 (1/2747) 0 * * Os_TE_524452 Chr2 12671967 12671968 - ORSiTERT00200154 9386 0.0020 (6/2983) 0 * Os_TE_524451 Os_TE_524451 Chr2 12671961 12671960 + TRUNCATOR 2918 0.0020 (6/2984) 0 * Os_TE_524452 Os_TE_524450 Chr2 12671390 12671389 - TNR2A 152 0.0030 (9/2985) 0 * * Os_TE_524414 Chr2 12657410 12657411 - HARB-1_OS 5166 0.0014 (4/2928) 0 * * Os_TE_524400 Chr2 12643995 12642706 + CACTA-M 1129 0.3115 (916/2941) 1 Intact Os_TE_524399 Os_TE_524399 Chr2 12642706 12643995 - ORSgTETN00200001 10994 0.3071 (893/2908) 1 Intact Os_TE_524400 Os_TE_524386 Chr2 12640081 12640082 + COPIA2-LTR_OS 6433 0.0013 (4/2995) 0 * Os_TE_524385 Os_TE_524385 Chr2 12640077 12640076 - COPIA2-LTR_OS 6433 0.0013 (4/2997) 0 * Os_TE_524386 Os_TE_524384 Chr2 12640019 12640020 + ORSgTEMT04600010 284 0.0010 (3/2997) 0 * * Os_TE_524383 Chr2 12639548 12639549 + ORSgTEMT00300063 413 0.0017 (5/2985) 0 * * Os_TE_524343 Chr2 12620616 12620615 - RIREX_LTR 8828 0.0003 (1/2979) 0 * * Os_TE_524340 Chr2 12619731 12619732 - RETROSAT2LTRA 3112 0.0004 (1/2821) 0 * * Os_TE_524338 Chr2 12618535 12618534 + TWIFB1 3737 0.0020 (2/976) 0 * * Os_TE_524336 Chr2 12617275 12617276 - SZ-36LTR 5825 0.6746 (2013/2984) 0 * Os_TE_524335 Os_TE_524335 Chr2 12617272 12617271 + ORSiCMCM00100017 5674 0.6771 (2021/2985) 0 * Os_TE_524336 Os_TE_524334 Chr2 12617266 12617267 - RETROSAT3_LTR 11537 0.0013 (4/2989) 0 * * Os_TE_524315 Chr2 12606215 12606216 + SZ-67LTR 1540 0.0003 (1/2996) 0 * Os_TE_524314 Os_TE_524314 Chr2 12606211 12606210 - SZ-67LTR 1540 0.0013 (4/2997) 0 * Os_TE_524315 Os_TE_524313 Chr2 12605119 12605120 + SZ-37_LTR 12001 0.0017 (5/2997) 0 * Os_TE_524312 Os_TE_524312 Chr2 12605115 12605114 - SZ-37_LTR 12001 0.0017 (5/2996) 0 * Os_TE_524313 Os_TE_524290 Chr2 12590577 12590576 + COPIA2-LTR_OS 6433 0.0048 (5/1031) 0 * * Os_TE_524289 Chr2 12589979 12589980 - ORSgTEMT00501447 126 0.0014 (4/2945) 0 * * Os_TE_524276 Chr2 12584193 12584194 - SC-3_LTR 5748 0.0013 (4/2987) 0 * Os_TE_524275 Os_TE_524275 Chr2 12584187 12584186 + ORSiTERTOOT00296 5553 0.0013 (4/2986) 0 * Os_TE_524276 Os_TE_524261 Chr2 12575728 12575727 - SC-3_LTR 5748 0.0219 (65/2966) 0 * * Os_TE_524259 Chr2 12575291 12575292 - SC-3_LTR 5748 0.0007 (2/2972) 0 * * Os_TE_524246 Chr2 12568154 12568153 + CRMA1_LTR 7543 0.0017 (5/2972) 0 * * Os_TE_524215 Chr2 12556197 12556198 + SZ-36LTR 5825 0.0016 (1/643) 0 * * Os_TE_524178 Chr2 12541312 12541313 - TRUNCATOR2_LTR 2904 0.0010 (3/2897) 0 * * Os_TE_524169 Chr2 12536632 12536633 - RIREX_LTR 8828 0.0008 (1/1204) 0 * * Os_TE_524166 Chr2 12533991 12533992 - TRUNCATOR2_LTR 2904 0.0322 (96/2983) 0 * Os_TE_524165 Os_TE_524165 Chr2 12533987 12533986 + ORSiCMCM00100019 2717 0.0315 (94/2988) 0 * Os_TE_524166 Os_TE_524145 Chr2 12522782 12522783 - COPIA2-LTR_OS 6433 0.0007 (2/2985) 0 * Os_TE_524144 Os_TE_524144 Chr2 12522778 12522777 + COPIA2-LTR_OS 6433 0.0007 (2/2990) 0 * Os_TE_524145 Os_TE_524127 Chr2 12517019 12517020 + SPMLIKE 10989 0.6465 (1928/2982) 0 * Os_TE_524126 Os_TE_524126 Chr2 12517017 12517016 - ORSgTETN00200001 10994 0.5433 (1317/2424) 0 * Os_TE_524127 Os_TE_524082 Chr2 12506317 12506318 - MPING 430 0.0007 (2/2998) 0 * Os_TE_524081 Os_TE_524081 Chr2 12506315 12506314 + MPING 430 0.0007 (2/2996) 0 * Os_TE_524082 Os_TE_524020 Chr2 12478579 12478578 + STOWAWAY51_OS 246 0.0003 (1/2984) 0 * * Os_TE_523989 Chr2 12469044 12469043 - COPIA2-LTR_OS 6433 0.0003 (1/2923) 0 * * Os_TE_523988 Chr2 12468917 12468918 + HARB-1_OS 5166 0.0003 (1/2869) 0 * Os_TE_523987 Os_TE_523987 Chr2 12468915 12468914 - HARB-1_OS 5166 0.0003 (1/2879) 0 * Os_TE_523988 Os_TE_523972 Chr2 12466977 12466978 - OLO24 345 0.0003 (1/2997) 0 * Os_TE_523971 Os_TE_523971 Chr2 12466975 12466974 + OLO24 345 0.0003 (1/2996) 0 * Os_TE_523972 Os_TE_523970 Chr2 12466570 12466571 - COPIA2-LTR_OS 6433 0.0003 (1/2979) 0 * Os_TE_523969 Os_TE_523969 Chr2 12466566 12466565 + COPIA2-LTR_OS 6433 0.0003 (1/2976) 0 * Os_TE_523970 Os_TE_523967 Chr2 12466445 12466446 - STOWAWAY51_OS 246 0.0003 (1/2983) 0 * * Os_TE_523959 Chr2 12462299 12462300 - MPING 430 0.0013 (4/2986) 0 * Os_TE_523958 Os_TE_523958 Chr2 12462297 12462296 + MPING 430 0.0017 (5/2985) 0 * Os_TE_523959 Os_TE_523935 Chr2 12455810 12455811 + COPIA2-LTR_OS 6433 0.0003 (1/2981) 0 * Os_TE_523934 Os_TE_523934 Chr2 12455806 12455805 - COPIA2-LTR_OS 6433 0.0003 (1/2981) 0 * Os_TE_523935 Os_TE_523925 Chr2 12453921 12453922 + OSR3_LTR 5201 0.0050 (15/2974) 0 * * Os_TE_523891 Chr2 12436427 12436426 + STOWAWAY51_OS 246 0.0003 (1/2978) 0 * * Os_TE_523842 Chr2 12412592 12411418 + TNR2A 152 0.3359 (1005/2992) 1 Intact * Os_TE_523837 Chr2 12410490 12410489 - ORSiTEMT01300001 950 0.0003 (1/2977) 0 * * Os_TE_523836 Chr2 12410451 12410452 + RIREX_LTR 8828 0.0013 (4/2984) 0 * Os_TE_523835 Os_TE_523835 Chr2 12410447 12410446 - RIREX_LTR 8828 0.0013 (4/2967) 0 * Os_TE_523836 Os_TE_523834 Chr2 12409981 12409980 + COPI2_LTR 4733 0.0003 (1/2920) 0 * * Os_TE_523745 Chr2 12368552 12368553 + ORSiTERTOOT00296 5553 0.0003 (1/2980) 0 * Os_TE_523744 Os_TE_523744 Chr2 12368548 12368547 - SC-3_LTR 5748 0.0003 (1/2979) 0 * Os_TE_523745 Os_TE_523743 Chr2 12368104 12368105 - SC-8_LTR 4951 0.0003 (1/2989) 0 * Os_TE_523742 Os_TE_523742 Chr2 12368100 12368099 + SC-8_LTR 4951 0.0003 (1/2989) 0 * Os_TE_523743 Os_TE_523741 Chr2 12368044 12368045 + SC-8_LTR 4951 0.0003 (1/2987) 0 * Os_TE_523740 Os_TE_523740 Chr2 12368040 12368039 - SC-8_LTR 4951 0.0003 (1/2986) 0 * Os_TE_523741 Os_TE_523738 Chr2 12367547 12367548 - SC-3_LTR 5748 0.0007 (2/2984) 0 * Os_TE_523737 Os_TE_523737 Chr2 12367543 12367542 + ORSiTERTOOT00296 5553 0.0007 (2/2980) 0 * Os_TE_523738 Os_TE_523661 Chr2 12320287 12320288 + ORSiTERTOOT00085 785 0.0004 (1/2821) 0 * * Os_TE_523646 Chr2 12302230 12302229 + GYPSY-A_LTR 8951 0.0031 (3/963) 0 * * Os_TE_523608 Chr2 12292459 12292458 + RETROSAT2LTRA 3112 0.0039 (4/1030) 0 * * Os_TE_523557 Chr2 12272931 12272932 + COPIA3-LTR_OS 5061 0.0017 (5/2995) 0 * * Os_TE_523507 Chr2 12252392 12252391 - CACTA-Q 2268 0.0010 (3/2958) 0 * * Os_TE_523452 Chr2 12231122 12231121 + STOWAWAY44_OS 240 0.0115 (34/2963) 0 * Os_TE_523451 Os_TE_523451 Chr2 12231119 12231120 - STOWAWAY44_OS 240 0.0108 (32/2970) 0 * Os_TE_523452 Os_TE_523431 Chr2 12221086 12220766 + ORSgTEMT00100531 325 0.3349 (998/2980) 1 Intact Os_TE_523430 Os_TE_523430 Chr2 12220749 12221084 + NDNA1TNA_OS 334 0.3368 (1005/2984) 1 Intact Os_TE_523431 Os_TE_523425 Chr2 12217965 12217964 + RIREX_LTR 8828 0.0007 (2/2997) 0 * * Os_TE_523411 Chr2 12208691 12208692 - RIREX_LTR 8828 0.0003 (1/2990) 0 * Os_TE_523410 Os_TE_523410 Chr2 12208687 12208686 + RIREX_LTR 8828 0.0003 (1/2987) 0 * Os_TE_523411 Os_TE_523404 Chr2 12205106 12205105 - SZ-66LTR 1223 0.0003 (1/2992) 0 * * Os_TE_523366 Chr2 12193237 12193236 + ORSiTEMT00300001 383 0.6437 (1877/2916) 0 * * Os_TE_523365 Chr2 12193165 12193166 + ORSgTEMT00300063 413 0.6302 (1793/2845) 0 * * Os_TE_523359 Chr2 12189294 12189295 - COPI2_LTR 4733 0.0003 (1/2947) 0 * * Os_TE_523296 Chr2 12164633 12164632 - ORSiTETNOOT00134 607 0.0003 (1/2985) 0 * * Os_TE_523279 Chr2 12158273 12161677 + ORSiCMCM00100019 2717 0.3444 (988/2869) 1 Intact * Os_TE_523269 Chr2 12154024 12154025 - TRUNCATOR 2918 0.0017 (5/2998) 0 * * Os_TE_523268 Chr2 12153682 12153683 - COPI2_LTR 4733 0.0003 (1/2996) 0 * * Os_TE_523247 Chr2 12144370 12144371 + STOWAWAY51_OS 246 0.0003 (1/2973) 0 * * Os_TE_523244 Chr2 12142451 12142452 + ORSgTEMT00700017 386 0.0004 (1/2823) 0 * * Os_TE_523230 Chr2 12133395 12133396 + SPMLIKE 10989 0.0007 (2/2915) 0 * * Os_TE_523196 Chr2 12120847 12120846 - COPIA2-LTR_OS 6433 0.0010 (3/2991) 0 * * Os_TE_523195 Chr2 12120033 12120034 - CACTA-M 1129 0.0385 (102/2648) 0 * * Os_TE_523149 Chr2 12102356 12102355 - COPIA2-LTR_OS 6433 0.0003 (1/2936) 0 * * Os_TE_523100 Chr2 12090236 12090237 + ORSiTERTOOT00226 792 0.0003 (1/2966) 0 * Os_TE_523099 Os_TE_523099 Chr2 12090231 12090230 - SZ-22_LTR 4403 0.0003 (1/2967) 0 * Os_TE_523100 Os_TE_523077 Chr2 12084504 12084503 + RETROSAT3_LTR 11537 0.0003 (1/2956) 0 * * Os_TE_523076 Chr2 12084368 12084369 - INDITTO 263 0.0007 (2/2979) 0 * Os_TE_523075 Os_TE_523075 Chr2 12084366 12084365 + INDITTO 263 0.0007 (2/2977) 0 * Os_TE_523076 Os_TE_523012 Chr2 12048460 12048461 - SZ-40LTR 2465 0.0013 (4/2988) 0 * * Os_TE_523007 Chr2 12043998 12043997 + TRUNCATOR 2918 0.6302 (1878/2980) 0 * Os_TE_523006 Os_TE_523006 Chr2 12043997 12043998 - TRUNCATOR 2918 0.6290 (1877/2984) 0 * Os_TE_523007 Os_TE_522995 Chr2 12036031 12036030 + TRUNCATOR2_LTR 2904 0.0007 (2/2984) 0 * * Os_TE_522927 Chr2 12001931 12001932 + COPIA2-LTR_OS 6433 0.0010 (3/2931) 0 * Os_TE_522926 Os_TE_522926 Chr2 12001927 12001926 - COPIA2-LTR_OS 6433 0.0010 (3/2932) 0 * Os_TE_522927 Os_TE_522886 Chr2 11942871 11942872 - OsSN3 183 0.0017 (5/2973) 0 * * Os_TE_522883 Chr2 11942469 11942468 + ORSiTERTOOT00226 792 0.0534 (159/2976) 0 * * Os_TE_522816 Chr2 11906013 11906014 - RIREX_LTR 8828 0.0003 (1/2988) 0 * Os_TE_522815 Os_TE_522815 Chr2 11906009 11906008 + RIREX_LTR 8828 0.0003 (1/2987) 0 * Os_TE_522816 Os_TE_522813 Chr2 11904679 11904680 - RETROSAT3_LTR 11537 0.0013 (4/2999) 0 * * Os_TE_522809 Chr2 11902751 11897051 + ORSiTERTOOT00296 5553 0.3312 (986/2977) 1 Intact Os_TE_522807 Os_TE_522807 Chr2 11897051 11902520 - SC-3_LTR 5748 0.3322 (991/2983) 1 Intact Os_TE_522809 Os_TE_522753 Chr2 11873392 11873393 + COPI2_LTR 4733 0.0521 (156/2993) 0 * Os_TE_522752 Os_TE_522752 Chr2 11873388 11873387 - COPI2_LTR 4733 0.0450 (134/2977) 0 * Os_TE_522753 Os_TE_522724 Chr2 11865266 11865265 - WUJI 257 0.0014 (4/2773) 0 * * Os_TE_522716 Chr2 11864494 11864495 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_522715 Os_TE_522715 Chr2 11864490 11864489 + COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_522716 Os_TE_522703 Chr2 11859323 11815978 - ORSgTERT00201216 11284 0.3826 (1142/2985) 1 Intact Os_TE_522607 Os_TE_522607 Chr2 11815978 11859323 - RIRE2_LTR 11306 0.3981 (1147/2881) 1 Intact Os_TE_522703 Os_TE_522596 Chr2 11814803 11814804 + ORSgTETNOOT01668 244 0.0003 (1/2994) 0 * * Os_TE_522594 Chr2 11814429 11814430 + ENSPM_OS 9843 0.6129 (1772/2891) 0 * Os_TE_522593 Os_TE_522593 Chr2 11814427 11814426 - ENSPM_OS 9843 0.0042 (5/1185) 0 * Os_TE_522594 Os_TE_522588 Chr2 11812249 11812248 - NDNA2TNA_OS 346 0.0435 (5/115) -1 * * Os_TE_522582 Chr2 11808159 11809229 + COPIA2-LTR_OS 6433 0.4130 (1153/2792) 1 Solo_LTR * Os_TE_522578 Chr2 11806731 11800939 - ORSgTETN00200001 10994 0.4343 (1008/2321) 1 Intact Os_TE_522574 Os_TE_522574 Chr2 11800939 11806731 + SPMLIKE 10989 0.3211 (935/2912) 1 Intact Os_TE_522578 Os_TE_522536 Chr2 11777607 11777608 + ORSgTEMT00600272 361 0.1257 (140/1114) 0 * * Os_TE_522525 Chr2 11771346 11771084 + STOWAWAY36_OS 268 0.5755 (1162/2019) 1 Intact * Os_TE_522513 Chr2 11765721 11765510 - ORSgTEMT02400246 177 0.8683 (1022/1177) 1 Intact Os_TE_522512 Os_TE_522512 Chr2 11765506 11765718 - ORSgTEMT02400216 221 0.8686 (1005/1157) 1 Intact Os_TE_522513 Os_TE_522502 Chr2 11757811 11757812 + RPO_OS 1983 0.0018 (5/2845) 0 * * Os_TE_522500 Chr2 11757621 11757622 + ORSiCMCM00100017 5674 0.0003 (1/2881) 0 * Os_TE_522499 Os_TE_522499 Chr2 11757617 11757616 - SZ-36LTR 5825 0.0003 (1/2889) 0 * Os_TE_522500 Os_TE_522478 Chr2 11752849 11752850 - ORSgTEMT00100296 161 0.0003 (1/2980) 0 * * Os_TE_522435 Chr2 11742429 11742428 - RIREX_LTR 8828 0.0003 (1/2999) 0 * * Os_TE_522434 Chr2 11742413 11742414 + OSTE33 1012 0.0003 (1/2993) 0 * * Os_TE_522419 Chr2 11734256 11734255 - COPIA2-LTR_OS 6433 0.0007 (2/2995) 0 * * Os_TE_522407 Chr2 11731367 11731366 - COPIA2-LTR_OS 6433 0.0004 (1/2551) 0 * * Os_TE_522369 Chr2 11715949 11715950 + SZ-40LTR 2465 0.0385 (1/26) -1 * * Os_TE_522333 Chr2 11708526 11708696 + ORSgTEMT02000030 197 0.3368 (999/2966) 1 Intact * Os_TE_522327 Chr2 11703770 11703771 + ORSiTERTOOT00296 5553 0.0013 (4/2982) 0 * Os_TE_522326 Os_TE_522326 Chr2 11703766 11703765 - SC-3_LTR 5748 0.0013 (4/2982) 0 * Os_TE_522327 Os_TE_522263 Chr2 11663167 11663168 + STOWAWAY49_OS 241 0.0010 (3/2960) 0 * * Os_TE_522242 Chr2 11654223 11654222 - STOWAWAY11_OS 292 0.0007 (2/2978) 0 * * Os_TE_522219 Chr2 11644799 11644798 - GYPSY-B_LTR 7068 0.0007 (2/2911) 0 * * Os_TE_522212 Chr2 11643876 11643877 + COPI2_LTR 4733 0.0003 (1/2985) 0 * Os_TE_522211 Os_TE_522211 Chr2 11643872 11643871 - COPI2_LTR 4733 0.0003 (1/2991) 0 * Os_TE_522212 Os_TE_522210 Chr2 11643699 11643698 + SPMLIKE 10989 0.0003 (1/2981) 0 * * Os_TE_522208 Chr2 11642589 11642590 - OSLINE1-2 7128 0.0065 (4/615) -1 * * Os_TE_522190 Chr2 11638590 11638591 - ORSiTERTOOT00074 4935 0.0003 (1/2962) 0 * Os_TE_522189 Os_TE_522189 Chr2 11638586 11638585 + ORSiTERTOOT00074 4935 0.0003 (1/2958) 0 * Os_TE_522190 Os_TE_522113 Chr2 11611722 11611723 + TRUNCATOR 2918 0.0013 (4/2978) 0 * * Os_TE_522090 Chr2 11605952 11605951 + SPMLIKE 10989 0.0003 (1/2895) 0 * * Os_TE_522075 Chr2 11602809 11602810 + DS-RICE2N 613 0.0020 (6/2983) 0 * Os_TE_522074 Os_TE_522074 Chr2 11602802 11602801 - DS-RICE2N 613 0.0020 (6/2986) 0 * Os_TE_522075 Os_TE_522046 Chr2 11597874 11597875 + DS-RICE2N 613 0.0017 (5/2981) 0 * * Os_TE_522045 Chr2 11597873 11597872 + ORSgTEMT01601591 242 0.0064 (19/2984) 0 * * Os_TE_522031 Chr2 11594791 11594790 - STOWAWAY51_OS 246 0.0003 (1/2992) 0 * Os_TE_522030 Os_TE_522030 Chr2 11594785 11594786 + STOWAWAY51_OS 246 0.0003 (1/2995) 0 * Os_TE_522031 Os_TE_522019 Chr2 11588524 11588525 + TRUNCATOR 2918 0.0018 (5/2822) 0 * * Os_TE_522002 Chr2 11584998 11584999 - COPI1_LTR 4721 0.0003 (1/2980) 0 * * Os_TE_521975 Chr2 11573277 11573276 - TRUNCATOR 2918 0.6241 (1825/2924) 0 * * Os_TE_521939 Chr2 11561546 11561128 + ORSgTEMT00300069 394 0.3399 (947/2786) 1 Intact Os_TE_521937 Os_TE_521937 Chr2 11561124 11561540 + ORSgTEMT00300122 416 0.3390 (963/2841) 1 Intact Os_TE_521939 Os_TE_521908 Chr2 11553534 11553535 + COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_521907 Os_TE_521907 Chr2 11553530 11553529 - COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_521908 Os_TE_521895 Chr2 11546534 11540677 - SZ-36LTR 5825 0.3307 (991/2997) 1 Intact * Os_TE_521890 Chr2 11538843 11538844 + STOWAWAY11_OS 292 0.0017 (5/2991) 0 * Os_TE_521889 Os_TE_521889 Chr2 11538842 11538841 - STOWAWAY11_OS 292 0.0017 (5/2989) 0 * Os_TE_521890 Os_TE_521888 Chr2 11536971 11536972 + COPIA2-LTR_OS 6433 0.0209 (62/2960) 0 * Os_TE_521887 Os_TE_521887 Chr2 11536967 11536966 - COPIA2-LTR_OS 6433 0.0243 (72/2967) 0 * Os_TE_521888 Os_TE_521875 Chr2 11531984 11531985 - OSTE15 1168 0.0017 (5/2923) 0 * Os_TE_521874 Os_TE_521874 Chr2 11531980 11531979 + OSMU5 4881 0.0017 (5/2933) 0 * Os_TE_521875 Os_TE_521873 Chr2 11531974 11531975 + COPIA2-LTR_OS 6433 0.0003 (1/2939) 0 * Os_TE_521872 Os_TE_521872 Chr2 11531970 11531969 - COPIA2-LTR_OS 6433 0.0003 (1/2928) 0 * Os_TE_521873 Os_TE_521848 Chr2 11522708 11522709 + COPIA2-LTR_OS 6433 0.0010 (3/2978) 0 * Os_TE_521847 Os_TE_521847 Chr2 11522704 11522703 - COPIA2-LTR_OS 6433 0.0010 (3/2965) 0 * Os_TE_521848 Os_TE_521843 Chr2 11521591 11521590 - TYPEM 227 0.0003 (1/2993) 0 * Os_TE_521842 Os_TE_521842 Chr2 11521590 11521591 - ORSgTEMT02400246 177 0.0003 (1/2989) 0 * Os_TE_521843 Os_TE_521827 Chr2 11517190 11517191 - COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_521826 Os_TE_521826 Chr2 11517186 11517185 + COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_521827 Os_TE_521822 Chr2 11516222 11516221 - TRUNCATOR 2918 0.0007 (2/2963) 0 * * Os_TE_521797 Chr2 11506679 11506680 + COPIA2-LTR_OS 6433 0.0010 (3/2990) 0 * Os_TE_521796 Os_TE_521796 Chr2 11506675 11506674 - COPIA2-LTR_OS 6433 0.0010 (3/2986) 0 * Os_TE_521797 Os_TE_521768 Chr2 11484477 11484476 + ORSiTERTOOT00226 792 0.0074 (22/2967) 0 * * Os_TE_521767 Chr2 11483791 11483792 + RIREX_LTR 8828 0.0007 (2/2852) 0 * Os_TE_521766 Os_TE_521766 Chr2 11483787 11483786 - RIREX_LTR 8828 0.0007 (2/2821) 0 * Os_TE_521767 Os_TE_521762 Chr2 11482524 11482523 - ORSgTEMT02400179 221 0.4797 (1382/2881) 0 * * Os_TE_521759 Chr2 11481026 11481027 + AMYLTP 383 0.4436 (1153/2599) 0 * Os_TE_521758 Os_TE_521758 Chr2 11481018 11481017 - AMYLTP 383 0.4818 (1334/2769) 0 * Os_TE_521759 Os_TE_521753 Chr2 11479802 11479801 - STOWAWAY51_OS 246 0.0003 (1/2953) 0 * Os_TE_521752 Os_TE_521752 Chr2 11479796 11479797 + STOWAWAY51_OS 246 0.0007 (2/2939) 0 * Os_TE_521753 Os_TE_521751 Chr2 11479614 11479613 + ORSgTETNOOT00012 241 0.0003 (1/2982) 0 * * Os_TE_521741 Chr2 11475576 11475575 + ORSgTEMT01602181 239 0.6820 (1844/2704) 0 * * Os_TE_521607 Chr2 11423353 11423354 + ORSiTERTOOT00226 792 0.0011 (3/2731) 0 * * Os_TE_521555 Chr2 11392502 11392501 - ORSgTEMT01601208 238 0.0007 (2/2797) 0 * Os_TE_521554 Os_TE_521554 Chr2 11392501 11392502 - ORSgTEMT01601208 238 0.0014 (4/2796) 0 * Os_TE_521555 Os_TE_521526 Chr2 11383132 11383131 - STOWAWAY51_OS 246 0.0003 (1/2991) 0 * Os_TE_521525 Os_TE_521525 Chr2 11383126 11383127 + STOWAWAY51_OS 246 0.0003 (1/2995) 0 * Os_TE_521526 Os_TE_521511 Chr2 11379393 11379392 + ORSgTEMT00900471 260 0.0037 (4/1087) 0 * Os_TE_521510 Os_TE_521510 Chr2 11379392 11379393 - ORSgTEMT00901723 248 0.0046 (5/1094) 0 * Os_TE_521511 Os_TE_521509 Chr2 11378754 11378755 + ORSiTERT00100080 6173 0.0009 (1/1118) 0 * * Os_TE_521507 Chr2 11377576 11377577 - SZ-22_LTR 4403 0.0009 (1/1125) 0 * * Os_TE_521490 Chr2 11370506 11370507 - GYPSY-A_LTR 8951 0.0003 (1/2984) 0 * Os_TE_521489 Os_TE_521489 Chr2 11370502 11370501 + SZ-40LTR 2465 0.0003 (1/2973) 0 * Os_TE_521490 Os_TE_521487 Chr2 11370448 11370447 - COPIA2-LTR_OS 6433 0.0007 (2/2973) 0 * * Os_TE_521478 Chr2 11362509 11362508 + SC-4_LTR 5218 0.0007 (2/2691) 0 * * Os_TE_521476 Chr2 11360851 11360852 - RETRO1_LTR 8314 0.0003 (1/2932) 0 * Os_TE_521475 Os_TE_521475 Chr2 11360847 11360846 + RETRO1_LTR 8314 0.0003 (1/2865) 0 * Os_TE_521476 Os_TE_521462 Chr2 11356243 11356242 - ORSgTEMT01700299 212 0.0017 (5/2992) 0 * Os_TE_521461 Os_TE_521461 Chr2 11356240 11356241 + ORSgTEMT01701104 154 0.0017 (5/2992) 0 * Os_TE_521462 Os_TE_521429 Chr2 11344263 11344264 + SZ-43LTR 4039 0.0017 (5/2982) 0 * Os_TE_521428 Os_TE_521428 Chr2 11344259 11344258 - SZ-43LTR 4039 0.0013 (4/2980) 0 * Os_TE_521429 Os_TE_521422 Chr2 11340076 11340077 - SZ-37_LTR 12001 0.0017 (5/2972) 0 * * Os_TE_521415 Chr2 11337947 11337948 + TWIF 586 0.0010 (3/2983) 0 * Os_TE_521414 Os_TE_521414 Chr2 11337940 11337939 - ORSiTETNOOT00134 607 0.0007 (2/2986) 0 * Os_TE_521415 Os_TE_521413 Chr2 11337248 11337249 + TRUNCATOR2_LTR 2904 0.0267 (80/2995) 0 * Os_TE_521412 Os_TE_521412 Chr2 11337244 11337243 - TRUNCATOR2_LTR 2904 0.0274 (82/2995) 0 * Os_TE_521413 Os_TE_521363 Chr2 11314603 11314602 + OSTE9 421 0.0004 (1/2464) 0 * * Os_TE_521345 Chr2 11297458 11297457 + SC-8_LTR 4951 0.0010 (3/2995) 0 * * Os_TE_521293 Chr2 11270509 11270510 + COPI2_LTR 4733 0.0003 (1/2986) 0 * * Os_TE_521189 Chr2 11237054 11237053 + RETRO2A_LTR 12895 0.0272 (81/2974) 0 * * Os_TE_521162 Chr2 11231285 11231286 - RETROSAT4_LTR 13504 0.6544 (1941/2966) 0 * * Os_TE_521154 Chr2 11226175 11226176 + TESS 244 0.0245 (72/2934) 0 * * Os_TE_521135 Chr2 11220885 11220886 - SZ-25LTR 330 0.0010 (3/2973) 0 * Os_TE_521134 Os_TE_521134 Chr2 11220881 11220880 + COPI1_LTR 4721 0.0013 (4/2969) 0 * Os_TE_521135 Os_TE_521125 Chr2 11217797 11217796 + AMYLTP 383 0.0014 (4/2956) 0 * * Os_TE_521050 Chr2 11179900 11179901 - INDITTO 263 0.0447 (127/2843) 0 * Os_TE_521049 Os_TE_521049 Chr2 11179898 11179897 + INDITTO 263 0.0425 (126/2967) 0 * Os_TE_521050 Os_TE_521032 Chr2 11175442 11175443 + TRUNCATOR2_LTR 2904 0.0088 (26/2948) 0 * * Os_TE_521023 Chr2 11173680 11173679 + ENSPM4_OS 11610 0.0003 (1/2860) 0 * * Os_TE_521015 Chr2 11169257 11169258 + STOWAWAY11_OS 292 0.0017 (5/2987) 0 * Os_TE_521014 Os_TE_521014 Chr2 11169256 11169255 - STOWAWAY11_OS 292 0.0017 (5/2983) 0 * Os_TE_521015 Os_TE_521012 Chr2 11168028 11168029 - TELIA 141 0.0010 (3/2988) 0 * Os_TE_521011 Os_TE_521011 Chr2 11168020 11168019 + TELIA 141 0.0007 (2/2987) 0 * Os_TE_521012 Os_TE_520993 Chr2 11161606 11161607 - ORSgTEMT02900061 318 0.6771 (1996/2948) 0 * * Os_TE_520984 Chr2 11151135 11151134 + ORSgTEMT00500201 140 0.0742 (221/2979) 0 * * Os_TE_520924 Chr2 11131381 11131382 + TRUNCATOR 2918 0.1535 (421/2742) 0 * * Os_TE_520898 Chr2 11123853 11123852 - RIREX_LTR 8828 0.1365 (403/2952) 0 * * Os_TE_520897 Chr2 11123760 11123761 - ORSiTEMT01300001 950 0.0255 (73/2867) 0 * * Os_TE_520891 Chr2 11122492 11122493 - CRM-LTR_OS 7749 0.0012 (3/2561) 0 * * Os_TE_520886 Chr2 11121661 11121660 - ORSiCMCM00100014 10855 0.0006 (1/1630) -1 * * Os_TE_520875 Chr2 11120613 11120614 + ORSgTETNOOT00908 242 0.0244 (69/2825) 0 * * Os_TE_520873 Chr2 11120175 11120176 - ORSgTEMT02400179 221 0.3402 (1013/2978) 0 * Os_TE_520872 Os_TE_520872 Chr2 11120174 11120173 - TYPEM 227 0.3328 (980/2945) 0 * Os_TE_520873 Os_TE_520837 Chr2 11096908 11096909 - ORSgTEMT01702346 154 0.0014 (3/2143) 0 * * Os_TE_520784 Chr2 11081422 11081423 - SZ-7A_LTR 11400 0.0003 (1/2979) 0 * * Os_TE_520764 Chr2 11071593 11071592 + SZ-19LTR 1513 0.0017 (5/2970) 0 * * Os_TE_520759 Chr2 11070165 11070164 - ENSPM5_OS 9581 0.0017 (5/2989) 0 * * Os_TE_520745 Chr2 11058749 11058750 - ORSiTERTOOT00332 5395 0.0003 (1/2995) 0 * Os_TE_520744 Os_TE_520744 Chr2 11058745 11058744 + ORSiTERTOOT00332 5395 0.0003 (1/2974) 0 * Os_TE_520745 Os_TE_520736 Chr2 11056218 11056219 - RETRO2_LTR 12874 0.0339 (101/2982) 0 * * Os_TE_520731 Chr2 11054793 11054792 + ORSgTEMT01601122 212 0.0013 (4/2984) 0 * * Os_TE_520730 Chr2 11054397 11054398 + TESSBIG 4057 0.0010 (3/2979) 0 * * Os_TE_520728 Chr2 11054062 11054061 + NDNA1TNA_OS 334 0.0342 (102/2982) 0 * Os_TE_520727 Os_TE_520727 Chr2 11054061 11054062 + ORSgTEMT00101674 340 0.0346 (103/2975) 0 * Os_TE_520728 Os_TE_520726 Chr2 11053954 11053955 - ORSgTEMT00200037 141 0.0118 (35/2969) 0 * Os_TE_520725 Os_TE_520725 Chr2 11053951 11053950 + ORSgTEMT01701104 154 0.0118 (35/2966) 0 * Os_TE_520726 Os_TE_520713 Chr2 11049031 11048283 - BAJIELTR 4500 0.8190 (2426/2962) 1 Solo_LTR * Os_TE_520710 Chr2 11047785 11047784 + ORSgTEMT00101542 317 0.0007 (2/2677) 0 * * Os_TE_520709 Chr2 11047273 11047030 + ORSgTEMT01400032 215 0.8265 (2239/2709) 1 Intact Os_TE_520706 Os_TE_520706 Chr2 11047028 11047235 + ORSgTEMT01400032 215 0.7927 (2076/2619) 1 Intact Os_TE_520709 Os_TE_520704 Chr2 11046565 11046566 - ORSgTETN00200001 10994 0.0452 (129/2855) 0 * * Os_TE_520693 Chr2 11044796 11045889 + ORSgTEMT01701663 106 0.8205 (2427/2958) 1 Intact * Os_TE_520677 Chr2 11042654 11042655 + RETRO2A_LTR 12895 0.0017 (5/2972) 0 * * Os_TE_520657 Chr2 11026191 11026190 + EXPLORER 210 0.0017 (5/2974) 0 * * Os_TE_520651 Chr2 11025608 11025609 - COPIA2-LTR_OS 6433 0.0004 (1/2857) 0 * * Os_TE_520642 Chr2 11024041 11024042 - OSTE1 801 0.1132 (306/2703) 0 * * Os_TE_520626 Chr2 11020514 11020513 + ORSgTEMT01400031 216 0.0017 (5/2983) 0 * * Os_TE_520616 Chr2 11019153 11019152 + TREP215 239 0.0011 (3/2675) 0 * * Os_TE_520614 Chr2 11018397 11018396 - ORSgTEMT01601432 239 0.0145 (43/2958) 0 * * Os_TE_520611 Chr2 11018384 11018383 + ORSgTEMT00501786 149 0.0671 (196/2923) 0 * Os_TE_520610 Os_TE_520610 Chr2 11018380 11018381 + OLO24 345 0.0685 (203/2963) 0 * Os_TE_520611 Os_TE_520606 Chr2 11015620 11015619 + ORSgTEMT02400245 225 0.0131 (39/2982) 0 * * Os_TE_520605 Chr2 11013242 11013243 + OSMU5 4881 0.0973 (290/2981) 0 * Os_TE_520604 Os_TE_520604 Chr2 11013238 11013237 - OSTE15 1168 0.1044 (290/2779) 0 * Os_TE_520605 Os_TE_520600 Chr2 11011686 11011687 - CLOUD 734 0.0744 (221/2969) 0 * Os_TE_520599 Os_TE_520599 Chr2 11011677 11011676 - CLOUD 734 0.0782 (233/2981) 0 * Os_TE_520600 Os_TE_520594 Chr2 11005972 11005971 + ORSgTEMT01701591 154 0.0020 (6/2959) 0 * * Os_TE_520574 Chr2 10998647 10998648 + SZ-61LTR 2410 0.0936 (244/2608) 0 * Os_TE_520573 Os_TE_520573 Chr2 10998643 10998642 - SZ-61LTR 2410 0.0937 (244/2604) 0 * Os_TE_520574 Os_TE_520566 Chr2 10996588 10996589 + COPIA2-LTR_OS 6433 0.0007 (2/2997) 0 * Os_TE_520565 Os_TE_520565 Chr2 10996584 10996583 - COPIA2-LTR_OS 6433 0.0007 (2/2997) 0 * Os_TE_520566 Os_TE_520554 Chr2 10988548 10988549 - SZ-20LTR 1395 0.0794 (238/2998) 0 * Os_TE_520553 Os_TE_520553 Chr2 10988545 10988544 + SZ-44LTR 1408 0.0785 (235/2993) 0 * Os_TE_520554 Os_TE_520549 Chr2 10984379 10984378 - SC-3_LTR 5748 0.0007 (2/2991) 0 * * Os_TE_520548 Chr2 10984307 10984308 - SC-3_LTR 5748 0.0030 (9/2987) 0 * Os_TE_520547 Os_TE_520547 Chr2 10984303 10984302 + ORSiTERTOOT00296 5553 0.0030 (9/2982) 0 * Os_TE_520548 Os_TE_520546 Chr2 10983997 10983998 - SC-3_LTR 5748 0.0003 (1/2991) 0 * Os_TE_520545 Os_TE_520545 Chr2 10983993 10983992 + ORSiTERTOOT00296 5553 0.0003 (1/2993) 0 * Os_TE_520546 Os_TE_520518 Chr2 10968200 10968199 - STOWAWAY51_OS 246 0.0007 (2/2960) 0 * * Os_TE_520407 Chr2 10918385 10918386 - MERMITE18C 1473 0.1911 (557/2915) 0 * * Os_TE_520373 Chr2 10895680 10895679 + RETROSAT2LTRA 3112 0.0017 (4/2390) 0 * * Os_TE_520342 Chr2 10888121 10888122 + MPING 430 0.0007 (2/2957) 0 * * Os_TE_520327 Chr2 10878701 10878700 - TRUNCATOR 2918 0.1386 (400/2885) 0 * * Os_TE_520310 Chr2 10876275 10876274 - SZ-40LTR 2465 0.0408 (121/2968) 0 * * Os_TE_520291 Chr2 10869550 10869549 + ORSgTEMT04600010 284 0.0713 (207/2902) 0 * * Os_TE_520275 Chr2 10866327 10866326 - SC-4_LTR 5218 0.0003 (1/2989) 0 * * Os_TE_520249 Chr2 10859663 10859664 + AMYLTP 383 0.1517 (444/2927) 0 * Os_TE_520248 Os_TE_520248 Chr2 10859655 10859654 - AMYLTP 383 0.1421 (414/2914) 0 * Os_TE_520249 Os_TE_520245 Chr2 10857826 10857825 + COPI2_LTR 4733 0.0003 (1/2989) 0 * * Os_TE_520231 Chr2 10855437 10855438 - RIREX_LTR 8828 0.0004 (1/2726) 0 * Os_TE_520230 Os_TE_520230 Chr2 10855433 10855432 + RIREX_LTR 8828 0.0004 (1/2728) 0 * Os_TE_520231 Os_TE_520229 Chr2 10855228 10855229 + COPI2_LTR 4733 0.0004 (1/2718) 0 * Os_TE_520228 Os_TE_520228 Chr2 10855224 10855223 - COPI2_LTR 4733 0.0004 (1/2718) 0 * Os_TE_520229 Os_TE_520227 Chr2 10854114 10854113 + SINE03_OS 360 0.0004 (1/2400) 0 * * Os_TE_520226 Chr2 10853535 10853536 - MuDR4_OS 7610 0.1643 (447/2721) 0 * Os_TE_520225 Os_TE_520225 Chr2 10853528 10853527 - MuDR4_OS 7610 0.1554 (420/2702) 0 * Os_TE_520226 Os_TE_520206 Chr2 10849820 10849819 - STOWAWAY51_OS 246 0.0122 (33/2701) 0 * * Os_TE_520163 Chr2 10826353 10826354 + ORSiTERTOOT00027 10853 0.0004 (1/2460) 0 * Os_TE_520162 Os_TE_520162 Chr2 10826349 10826348 - RIRE3A_LTR 10580 0.0004 (1/2455) 0 * Os_TE_520163 Os_TE_520155 Chr2 10820365 10820366 - TRUNCATOR2_LTR 2904 0.0113 (34/2996) 0 * Os_TE_520154 Os_TE_520154 Chr2 10820361 10820360 + ORSiCMCM00100019 2717 0.0103 (31/2996) 0 * Os_TE_520155 Os_TE_520152 Chr2 10818819 10818818 + CACTA-B 1103 0.0401 (120/2991) 0 * Os_TE_520151 Os_TE_520151 Chr2 10818815 10818816 + ORSgTETN00200005 1121 0.0401 (120/2990) 0 * Os_TE_520152 Os_TE_520149 Chr2 10815884 10815885 + RETRO2_LTR 12874 0.0010 (3/2993) 0 * Os_TE_520148 Os_TE_520148 Chr2 10815880 10815879 - RETRO2_LTR 12874 0.0010 (3/2992) 0 * Os_TE_520149 Os_TE_520139 Chr2 10813520 10813521 + RETROSAT4_LTR 13504 0.0901 (261/2896) 0 * Os_TE_520138 Os_TE_520138 Chr2 10813516 10813515 - RETROSAT4_LTR 13504 0.0911 (263/2886) 0 * Os_TE_520139 Os_TE_520133 Chr2 10810927 10810926 + RIREX_LTR 8828 0.0114 (34/2991) 0 * * Os_TE_520115 Chr2 10805471 10805472 - ORSgTEMT04600010 284 0.0014 (4/2931) 0 * Os_TE_520114 Os_TE_520114 Chr2 10805469 10805468 + ORSgTEMT04600010 284 0.0014 (4/2935) 0 * Os_TE_520115 Os_TE_520047 Chr2 10781150 10781151 + EnSpm-11_OS 13126 0.0104 (31/2995) 0 * Os_TE_520046 Os_TE_520046 Chr2 10781148 10781147 - EnSpm-11_OS 13126 0.0100 (30/2995) 0 * Os_TE_520047 Os_TE_520040 Chr2 10778731 10778732 + OSTONOR1_LTR 6440 0.0682 (204/2992) 0 * Os_TE_520039 Os_TE_520039 Chr2 10778727 10778726 + OSTONOR1_LTR 6440 0.0614 (183/2979) 0 * Os_TE_520040 Os_TE_520038 Chr2 10777524 10777525 + ORSiTERTOOT00226 792 0.0003 (1/2994) 0 * Os_TE_520037 Os_TE_520037 Chr2 10777520 10777519 + ORSiTERTOOT00226 792 0.0003 (1/2995) 0 * Os_TE_520038 Os_TE_520024 Chr2 10772350 10772351 + CASGRANDA 465 0.0094 (28/2977) 0 * * Os_TE_519978 Chr2 10756688 10755375 + CACTA-B 1103 0.5727 (1552/2710) -1 Intact Os_TE_519977 Os_TE_519977 Chr2 10755376 10756685 - ORSgTETN00200001 10994 0.5430 (1403/2584) 1 Intact Os_TE_519978 Os_TE_519975 Chr2 10753519 10753518 - ORSgTEMT01601122 212 0.3446 (1030/2989) 0 * * Os_TE_519958 Chr2 10747649 10747650 + ORSiTERTOOT00028 8600 0.0023 (7/2998) 0 * * Os_TE_519956 Chr2 10745914 10745913 - CRATA 4786 0.0007 (2/2992) 0 * * Os_TE_519955 Chr2 10745829 10745830 - SC-8_LTR 4951 0.0007 (2/2993) 0 * Os_TE_519954 Os_TE_519954 Chr2 10745825 10745824 + SC-8_LTR 4951 0.0007 (2/2996) 0 * Os_TE_519955 Os_TE_519945 Chr2 10737465 10737466 - COPIA2-LTR_OS 6433 0.0003 (1/2933) 0 * Os_TE_519944 Os_TE_519944 Chr2 10737461 10737460 + COPIA2-LTR_OS 6433 0.0003 (1/2949) 0 * Os_TE_519945 Os_TE_519919 Chr2 10727376 10727377 - COPIA2-LTR_OS 6433 0.0007 (2/2842) 0 * * Os_TE_519887 Chr2 10720498 10720499 - MDR2 6967 0.0659 (197/2990) 0 * Os_TE_519886 Os_TE_519886 Chr2 10720490 10720489 + MDR2 6967 0.0652 (195/2989) 0 * Os_TE_519887 Os_TE_519883 Chr2 10720160 10719897 - ORSgTETNOOT02417 265 0.6031 (1793/2973) 1 Intact Os_TE_519879 Os_TE_519879 Chr2 10719903 10720155 - ORSgTETNOOT00303 256 0.6020 (1783/2962) 1 Intact Os_TE_519883 Os_TE_519868 Chr2 10718882 10718883 - NDNA1TNA_OS 334 0.0003 (1/2961) 0 * Os_TE_519867 Os_TE_519867 Chr2 10718880 10718879 + NDNA1TNA_OS 334 0.0003 (1/2966) 0 * Os_TE_519868 Os_TE_519859 Chr2 10715241 10715242 - RIRE2_LTR 11306 0.0003 (1/2930) 0 * Os_TE_519858 Os_TE_519858 Chr2 10715237 10715236 + RIRE2_LTR 11306 0.0003 (1/2932) 0 * Os_TE_519859 Os_TE_519830 Chr2 10703211 10703212 - RIRE2_LTR 11306 0.0004 (1/2857) 0 * Os_TE_519829 Os_TE_519829 Chr2 10703207 10703206 + RIRE2_LTR 11306 0.0003 (1/2863) 0 * Os_TE_519830 Os_TE_519827 Chr2 10702298 10702297 + CACTA-B 1103 0.0010 (3/2984) 0 * Os_TE_519826 Os_TE_519826 Chr2 10702297 10702298 - CACTA-H 1152 0.0013 (4/2988) 0 * Os_TE_519827 Os_TE_519809 Chr2 10690322 10690323 - Cassandra_OS-LTR 764 0.0155 (46/2962) 0 * * Os_TE_519789 Chr2 10676699 10676700 + ORSgTETNOOT00908 242 0.0013 (4/2992) 0 * * Os_TE_519774 Chr2 10671956 10671957 - INDITTO 263 0.0003 (1/2898) 0 * * Os_TE_519760 Chr2 10670073 10670074 - AMYLTP 383 0.1323 (394/2977) 0 * * Os_TE_519718 Chr2 10654447 10654448 - TRUNCATOR2_LTR 2904 0.0100 (30/2988) 0 * Os_TE_519717 Os_TE_519717 Chr2 10654443 10654442 + TRUNCATOR2_LTR 2904 0.0097 (29/2989) 0 * Os_TE_519718 Os_TE_519698 Chr2 10645457 10645456 + RETRO2_LTR 12874 0.0305 (90/2951) 0 * * Os_TE_519685 Chr2 10635681 10635680 + AMYLTP 383 0.0003 (1/2993) 0 * * Os_TE_519674 Chr2 10631347 10631346 + MuDR4_OS 7610 0.0003 (1/2987) 0 * * Os_TE_519668 Chr2 10629461 10629462 - ORSgTETN00200001 10994 0.0101 (30/2981) 0 * Os_TE_519667 Os_TE_519667 Chr2 10629459 10629458 + SPMLIKE 10989 0.0091 (27/2983) 0 * Os_TE_519668 Os_TE_519665 Chr2 10628641 10628642 + TELIA 141 0.0003 (1/2970) 0 * Os_TE_519664 Os_TE_519664 Chr2 10628633 10628632 - TELIA 141 0.0003 (1/2988) 0 * Os_TE_519665 Os_TE_519663 Chr2 10628600 10628599 + ENSPM4_OS 11610 0.1177 (352/2991) 0 * * Os_TE_519662 Chr2 10628591 10628592 + MuDR-5_OS 17471 0.1295 (388/2996) 0 * Os_TE_519661 Os_TE_519661 Chr2 10628583 10628582 - MuDR-5_OS 17471 0.1419 (379/2670) 0 * Os_TE_519662 Os_TE_519660 Chr2 10628087 10621624 - SZ-14LTR 1193 0.5964 (1788/2998) 1 Intact Os_TE_519656 Os_TE_519656 Chr2 10621624 10628084 + RIRE5-LTR_OS 6427 0.5799 (1709/2947) 1 Intact Os_TE_519660 Os_TE_519655 Chr2 10621106 10621107 + RIREX_LTR 8828 0.0003 (1/2990) 0 * * Os_TE_519653 Chr2 10620150 10620294 + TNR2A 152 0.8038 (2381/2962) 1 Intact * Os_TE_519651 Chr2 10617342 10617343 + SPMLIKE 10989 0.0102 (30/2955) 0 * * Os_TE_519649 Chr2 10616352 10616353 + CACTA-I 1124 0.0114 (34/2980) 0 * Os_TE_519648 Os_TE_519648 Chr2 10616350 10616349 - CACTA-H 1152 0.0114 (34/2982) 0 * Os_TE_519649 Os_TE_519635 Chr2 10611271 10599303 + CLOUD-4 520 0.7361 (2151/2922) 1 Intact * Os_TE_519603 Chr2 10599258 10599259 + OSTE20 496 0.0286 (84/2937) 0 * Os_TE_519602 Os_TE_519602 Chr2 10599254 10599253 + OSTE20 496 0.0302 (87/2878) 0 * Os_TE_519603 Os_TE_519600 Chr2 10598682 10598681 - TRUNCATOR 2918 0.0305 (91/2984) 0 * * Os_TE_519591 Chr2 10597035 10597036 + RIREX_LTR 8828 0.0114 (34/2994) 0 * Os_TE_519590 Os_TE_519590 Chr2 10597031 10597030 - RIREX_LTR 8828 0.0110 (33/2995) 0 * Os_TE_519591 Os_TE_519581 Chr2 10595527 10595528 + RIRE2_LTR 11306 0.0110 (33/2992) 0 * * Os_TE_519577 Chr2 10594970 10594969 + OSMU5 4881 0.0017 (5/2985) 0 * * Os_TE_519576 Chr2 10594822 10567463 - ORSgTERT00201216 11284 0.7253 (2170/2992) 1 Intact Os_TE_519532 Os_TE_519532 Chr2 10567463 10594822 - RIRE2_LTR 11306 0.7208 (2151/2984) 1 Intact Os_TE_519576 Os_TE_519530 Chr2 10567053 10567054 + F569 228 0.0345 (95/2752) 0 * Os_TE_519529 Os_TE_519529 Chr2 10567051 10567050 - F569 228 0.0322 (96/2986) 0 * Os_TE_519530 Os_TE_519523 Chr2 10565676 10565677 - COPIA2-LTR_OS 6433 0.0132 (39/2948) 0 * * Os_TE_519517 Chr2 10562278 10562277 + TRUNCATOR2_LTR 2904 0.0007 (1/1413) 0 * * Os_TE_519516 Chr2 10562256 10562257 - GYPSY1-LTR_OS 8900 0.2913 (859/2949) 0 * Os_TE_519515 Os_TE_519515 Chr2 10562252 10562251 + GYPSY-B_LTR 7068 0.2957 (866/2929) 0 * Os_TE_519516 Os_TE_519514 Chr2 10562060 10562059 - ORSgTEMT01601208 238 0.2857 (840/2940) 0 * Os_TE_519513 Os_TE_519513 Chr2 10562057 10562058 - ORSgTEMT01600639 228 0.2774 (807/2909) 0 * Os_TE_519514 Os_TE_519506 Chr2 10559237 10559236 - STOWAWAY23_OS 100 0.3182 (945/2970) 0 * Os_TE_519505 Os_TE_519505 Chr2 10559233 10559234 + STOWAWAY43_OS 233 0.0024 (5/2095) 0 * Os_TE_519506 Os_TE_519504 Chr2 10559163 10559162 + ORSgTEMT01601591 242 0.1625 (482/2967) 0 * Os_TE_519503 Os_TE_519503 Chr2 10559160 10559161 + ORSgTEMT01601591 242 0.0004 (1/2517) 0 * Os_TE_519504 Os_TE_519501 Chr2 10559154 10559155 + STOWAWAY51_OS 246 0.1666 (494/2965) 0 * * Os_TE_519499 Chr2 10558773 10558774 + STOWAWAY51_OS 246 0.0007 (2/2830) 0 * * Os_TE_519497 Chr2 10558102 10558101 - ORSgTEMT01601987 232 0.1832 (464/2533) 0 * Os_TE_519496 Os_TE_519496 Chr2 10558099 10558100 - ORSgTEMT01601208 238 0.3100 (911/2939) 0 * Os_TE_519497 Os_TE_519495 Chr2 10557275 10557276 - SC-3_LTR 5748 0.0007 (2/2991) 0 * * Os_TE_519491 Chr2 10553903 10553902 - STOWAWAY8_OS 259 0.0014 (4/2953) 0 * * Os_TE_519489 Chr2 10552286 10551666 - HATOS1 3488 0.6920 (2056/2971) 1 Intact Os_TE_519488 Os_TE_519488 Chr2 10551664 10552286 + HATOS1 3488 0.6985 (2085/2985) 1 Intact Os_TE_519489 Os_TE_519472 Chr2 10540907 10540906 + OSTE21 1271 0.0015 (3/2047) 0 * Os_TE_519471 Os_TE_519471 Chr2 10540898 10540899 - OSTE21 1271 0.0015 (3/2051) 0 * Os_TE_519472 Os_TE_519466 Chr2 10534164 10534165 + TRUNCATOR 2918 0.1890 (365/1931) 0 * * Os_TE_519450 Chr2 10525585 10525586 + RIREX_LTR 8828 0.0010 (3/2940) 0 * Os_TE_519449 Os_TE_519449 Chr2 10525581 10525580 - RIREX_LTR 8828 0.0010 (3/2959) 0 * Os_TE_519450 Os_TE_519430 Chr2 10514251 10513644 + TYPEH 309 0.7640 (2052/2686) 1 Intact * Os_TE_519422 Chr2 10510161 10510006 - ORSgTEMT01701348 105 0.6834 (2033/2975) 1 Intact * Os_TE_519405 Chr2 10502713 10502712 - STOWAWAY36_OS 268 0.0019 (3/1585) 0 * * Os_TE_519391 Chr2 10497938 10496889 - EnSpm-12_OS 12603 0.5519 (1610/2917) 1 Intact Os_TE_519387 Os_TE_519387 Chr2 10496889 10497931 - CACTA-G1 797 0.5543 (1638/2955) 1 Intact Os_TE_519391 Os_TE_519384 Chr2 10495903 10495902 + CASGRANDA 465 0.4659 (1393/2990) 0 * * Os_TE_519375 Chr2 10492616 10492617 - MPING 430 0.0017 (5/2889) 0 * * Os_TE_519372 Chr2 10491254 10491253 + SZ-55_LTR 10318 0.0006 (1/1702) 0 * * Os_TE_519305 Chr2 10460736 10460737 - COPIA2-LTR_OS 6433 0.0031 (5/1627) 0 * * Os_TE_519265 Chr2 10451996 10451997 + COPIA2-LTR_OS 6433 0.0017 (5/2949) 0 * Os_TE_519264 Os_TE_519264 Chr2 10451992 10451991 - COPIA2-LTR_OS 6433 0.0014 (4/2943) 0 * Os_TE_519265 Os_TE_519261 Chr2 10449957 10449956 - SZ-58LTR 114 0.4679 (1394/2979) 0 * * Os_TE_519260 Chr2 10449610 10449609 + SZ-55_LTR 10318 0.0003 (1/2978) 0 * * Os_TE_519241 Chr2 10441731 10441730 + TRUNCATOR2_LTR 2904 0.1230 (366/2976) 0 * * Os_TE_519238 Chr2 10437335 10437336 - MuDR3_OS 8604 0.1500 (443/2954) 0 * Os_TE_519237 Os_TE_519237 Chr2 10437327 10437326 + MuDR3_OS 8604 0.1172 (336/2866) 0 * Os_TE_519238 Os_TE_519216 Chr2 10427957 10427958 - COPIA2-LTR_OS 6433 0.0007 (2/2972) 0 * Os_TE_519215 Os_TE_519215 Chr2 10427953 10427952 + COPIA2-LTR_OS 6433 0.0007 (2/2978) 0 * Os_TE_519216 Os_TE_519211 Chr2 10424291 10424292 + ORSiTERTOOT00296 5553 0.0003 (1/2946) 0 * * Os_TE_519206 Chr2 10419914 10419915 + RIRE3_LTR 12054 0.0013 (4/2983) 0 * * Os_TE_519176 Chr2 10400968 10400969 + TRUNCATOR 2918 0.0080 (24/2999) 0 * * Os_TE_519133 Chr2 10387729 10387730 + OSR3_LTR 5201 0.0057 (17/2982) 0 * * Os_TE_519114 Chr2 10381024 10381025 + HELITRON8_OS 8831 0.0027 (8/2983) 0 * * Os_TE_519112 Chr2 10380539 10380538 + ORSiTERTOOT00226 792 0.0004 (1/2320) 0 * * Os_TE_519110 Chr2 10378500 10378499 + ORSgTEMT02400206 225 0.1542 (461/2990) 0 * Os_TE_519109 Os_TE_519109 Chr2 10378499 10378500 - TYPEM 227 0.1549 (463/2989) 0 * Os_TE_519110 Os_TE_519093 Chr2 10370168 10370169 - INDITTO 263 0.0030 (9/2978) 0 * * Os_TE_519084 Chr2 10364553 10364554 + YOUREN 286 0.0013 (4/2985) 0 * Os_TE_519083 Os_TE_519083 Chr2 10364551 10364550 + ORSgTEMT05200196 285 0.0013 (4/2987) 0 * Os_TE_519084 Os_TE_519082 Chr2 10364174 10364175 + WUWU 113 0.0060 (18/2991) 0 * * Os_TE_519080 Chr2 10363993 10363992 + COPIA2-LTR_OS 6433 0.0003 (1/2966) 0 * * Os_TE_519079 Chr2 10363321 10363322 + RIRE2_LTR 11306 0.1774 (530/2988) 0 * Os_TE_519078 Os_TE_519078 Chr2 10363317 10363316 - RIRE2_LTR 11306 0.1763 (527/2989) 0 * Os_TE_519079 Os_TE_519077 Chr2 10362862 10362861 + STOWAWAY44_OS 240 0.0017 (5/2990) 0 * * Os_TE_519075 Chr2 10361366 10361367 - ORSgTEMT01601208 238 0.0013 (4/2984) 0 * * Os_TE_519073 Chr2 10361323 10361324 - SZ-9LTR 965 0.0057 (17/2978) 0 * Os_TE_519072 Os_TE_519072 Chr2 10361319 10361318 + SZ-9LTR 965 0.0054 (16/2977) 0 * Os_TE_519073 Os_TE_519067 Chr2 10357740 10357739 + ENSPM4_OS 11610 0.0020 (6/2978) 0 * * Os_TE_519059 Chr2 10349622 10349623 + ORSgTEMT00500885 144 0.1805 (538/2981) 0 * Os_TE_519058 Os_TE_519058 Chr2 10349621 10349620 + ORSgTEMT00501326 148 0.1793 (535/2983) 0 * Os_TE_519059 Os_TE_519055 Chr2 10349338 10349337 - ORSgTEMT01601432 239 0.0019 (5/2648) 0 * * Os_TE_518993 Chr2 10326880 10326881 - RIREX_LTR 8828 0.0025 (7/2829) 0 * * Os_TE_518984 Chr2 10324984 10324985 + SPMLIKE 10989 0.0007 (2/2962) 0 * * Os_TE_518978 Chr2 10324237 10324236 - COPIA2-LTR_OS 6433 0.0003 (1/2943) 0 * * Os_TE_518975 Chr2 10324216 10324215 + RIREX_LTR 8828 0.0003 (1/2922) 0 * * Os_TE_518938 Chr2 10313301 10313300 + RIREX_LTR 8828 0.0042 (12/2830) 0 * * Os_TE_518935 Chr2 10312723 10312724 + AMYLTP 383 0.5081 (1324/2606) 0 * * Os_TE_518837 Chr2 10284023 10284024 + NDNA1TNA_OS 334 0.1924 (555/2884) 0 * Os_TE_518836 Os_TE_518836 Chr2 10284021 10284020 - NDNA1TNA_OS 334 0.1169 (228/1950) 0 * Os_TE_518837 Os_TE_518808 Chr2 10271329 10271330 + COPIA2-LTR_OS 6433 0.0007 (2/2749) 0 * Os_TE_518807 Os_TE_518807 Chr2 10271325 10271324 - COPIA2-LTR_OS 6433 0.0004 (1/2844) 0 * Os_TE_518808 Os_TE_518803 Chr2 10270138 10269619 - CLOUD-4 520 0.4724 (1394/2951) 1 Intact Os_TE_518802 Os_TE_518802 Chr2 10269619 10270138 + CLOUD-4 520 0.4713 (1395/2960) 1 Intact Os_TE_518803 Os_TE_518801 Chr2 10269399 10269398 - ORSgTEMT02400246 177 0.3668 (1097/2991) 0 * * Os_TE_518790 Chr2 10264856 10264857 + ORSgTEMT00100531 325 0.5398 (1587/2940) 0 * * Os_TE_518777 Chr2 10258337 10258338 + ORSgTETNOOT01531 255 0.0112 (16/1424) 0 * Os_TE_518776 Os_TE_518776 Chr2 10258336 10258335 + ORSgTETNOOT01998 254 0.0126 (18/1427) 0 * Os_TE_518777 Os_TE_518773 Chr2 10257609 10257610 - F569 228 0.0028 (4/1434) 0 * * Os_TE_518772 Chr2 10257376 10257375 + DITAILA 257 0.0064 (19/2989) 0 * Os_TE_518771 Os_TE_518771 Chr2 10257375 10257376 - DITAIL 271 0.0060 (18/2987) 0 * Os_TE_518772 Os_TE_518769 Chr2 10256609 10256842 - ORSgTEMT01600768 234 0.4562 (1350/2959) 1 Intact * Os_TE_518748 Chr2 10241427 10252485 + CACTA-B 1103 0.7771 (1032/1328) 1 Intact * Os_TE_518724 Chr2 10237585 10237584 - TEOS1 476 0.0035 (5/1419) 0 * * Os_TE_518723 Chr2 10237441 10237442 - ORSgTEMT01400038 210 0.0028 (4/1423) 0 * * Os_TE_518722 Chr2 10237282 10237066 - ORSgTEMT01000003 232 0.7989 (1140/1427) 1 Intact * Os_TE_518721 Chr2 10236602 10236603 - ORSgTETNOOT01930 140 0.0036 (5/1399) 0 * Os_TE_518720 Os_TE_518720 Chr2 10236600 10236599 + ORSgTETNOOT01930 140 0.0036 (5/1397) 0 * Os_TE_518721 Os_TE_518710 Chr2 10227578 10227579 - RIRE5-LTR_OS 6427 0.1881 (558/2966) 0 * Os_TE_518709 Os_TE_518709 Chr2 10227574 10227573 + RIRE5-LTR_OS 6427 0.1777 (524/2949) 0 * Os_TE_518710 Os_TE_518685 Chr2 10214419 10214420 + COPIA2-LTR_OS 6433 0.0043 (13/2995) 0 * Os_TE_518684 Os_TE_518684 Chr2 10214415 10214414 - COPIA2-LTR_OS 6433 0.0047 (14/2994) 0 * Os_TE_518685 Os_TE_518664 Chr2 10203320 10203321 - HARB-1_OS 5166 0.0023 (7/2992) 0 * Os_TE_518663 Os_TE_518663 Chr2 10203318 10203317 + HARB-1_OS 5166 0.0023 (7/2988) 0 * Os_TE_518664 Os_TE_518656 Chr2 10199808 10199809 - MPING 430 0.0003 (1/2992) 0 * * Os_TE_518645 Chr2 10195172 10195171 - ORSgTETN00200001 10994 0.0003 (1/2990) 0 * * Os_TE_518644 Chr2 10194727 10194728 + OLO24C 356 0.0010 (3/2988) 0 * * Os_TE_518614 Chr2 10185796 10185797 - ORSgTEMT00100582 334 0.1079 (323/2993) 0 * * Os_TE_518608 Chr2 10182983 10182984 + SZ-55_LTR 10318 0.0007 (2/2982) 0 * Os_TE_518607 Os_TE_518607 Chr2 10182979 10182978 - SZ-55_LTR 10318 0.0007 (2/2979) 0 * Os_TE_518608 Os_TE_518606 Chr2 10182674 10182675 + COPIA2-LTR_OS 6433 0.0017 (5/2984) 0 * Os_TE_518605 Os_TE_518605 Chr2 10182670 10182669 - COPIA2-LTR_OS 6433 0.0017 (5/2984) 0 * Os_TE_518606 Os_TE_518604 Chr2 10181931 10181932 + COPIA2-LTR_OS 6433 0.0023 (7/2989) 0 * Os_TE_518603 Os_TE_518603 Chr2 10181927 10181926 - COPIA2-LTR_OS 6433 0.0030 (9/2984) 0 * Os_TE_518604 Os_TE_518493 Chr2 10133431 10133432 - TYPEG 427 0.1444 (412/2853) 0 * * Os_TE_518472 Chr2 10125845 10125844 + ORSgTEMT02900114 314 0.1504 (435/2892) 0 * Os_TE_518471 Os_TE_518471 Chr2 10125842 10125843 + ORSgTEMT02900076 336 0.1518 (437/2879) 0 * Os_TE_518472 Os_TE_518470 Chr2 10125683 10125682 + RPO_OS 1983 0.0020 (5/2518) 0 * * Os_TE_518468 Chr2 10125252 10122768 + GYPSI_LTR 18003 0.8669 (2533/2922) 1 Solo_LTR Os_TE_518466 Os_TE_518466 Chr2 10122768 10125252 - GYPSI_LTR 18003 0.8662 (2583/2982) 1 Solo_LTR Os_TE_518468 Os_TE_518465 Chr2 10122485 10122486 - AMYLTP 383 0.0003 (1/2930) 0 * * Os_TE_518463 Chr2 10121502 10121501 - OSTE14 885 0.1429 (426/2981) 0 * * Os_TE_518438 Chr2 10115998 10115997 + STOWAWAY44_OS 240 0.0004 (1/2233) 0 * * Os_TE_518396 Chr2 10096692 10096691 - WUJI 257 0.1504 (435/2892) 0 * * Os_TE_518391 Chr2 10095649 10096586 - STOWAWAY44_OS 240 0.8674 (2564/2956) 1 Intact * Os_TE_518390 Chr2 10095220 10095221 + RIREX_LTR 8828 0.0013 (4/2970) 0 * Os_TE_518389 Os_TE_518389 Chr2 10095216 10095215 - RIREX_LTR 8828 0.0015 (4/2593) 0 * Os_TE_518390 Os_TE_518387 Chr2 10094215 10094216 + ORSgTEMT01601934 207 0.1445 (430/2975) 0 * * Os_TE_518383 Chr2 10091629 10091292 + OLO24 345 0.8612 (2550/2961) 1 Intact Os_TE_518380 Os_TE_518380 Chr2 10091284 10091624 - OLO24 345 0.8622 (2578/2990) 1 Intact Os_TE_518383 Os_TE_518352 Chr2 10072666 10072425 - ORSiTEMT01500004 261 0.8630 (2576/2985) 1 Intact * Os_TE_518341 Chr2 10071547 10071285 - SZ-28LTR 262 0.8836 (2589/2930) 1 Intact * Os_TE_518328 Chr2 10070196 10070197 - TRUNCATOR2_LTR 2904 0.0008 (2/2621) 0 * Os_TE_518327 Os_TE_518327 Chr2 10070192 10070191 + ORSiTERTOOT00028 8600 0.0007 (2/2998) 0 * Os_TE_518328 Os_TE_518326 Chr2 10069981 10069982 + RETROSAT2LTR 12796 0.0090 (27/2998) 0 * Os_TE_518325 Os_TE_518325 Chr2 10069979 10069978 - RETROSAT2LTR 12796 0.0097 (29/2982) 0 * Os_TE_518326 Os_TE_518315 Chr2 10067190 10067191 + COPIA2-LTR_OS 6433 0.0003 (1/2977) 0 * Os_TE_518314 Os_TE_518314 Chr2 10067186 10067185 - COPIA2-LTR_OS 6433 0.0004 (1/2591) 0 * Os_TE_518315 Os_TE_518309 Chr2 10064405 10062968 + SETARIA2 1142 0.5817 (1470/2527) 1 Intact * Os_TE_518280 Chr2 10049375 10049376 + MERMITEB 1610 0.1501 (449/2991) 0 * * Os_TE_518213 Chr2 10010609 10010372 - STOWAWAY51_OS 246 0.8604 (2565/2981) 1 Intact Os_TE_518211 Os_TE_518211 Chr2 10010369 10010609 + STOWAWAY51_OS 246 0.8597 (2568/2987) 1 Intact Os_TE_518213 Os_TE_518210 Chr2 10010345 10010346 + ORSiTERTOOT00383 6602 0.0017 (5/2981) 0 * Os_TE_518209 Os_TE_518209 Chr2 10010341 10010340 - ORSiTERTOOT00383 6602 0.0010 (3/2930) 0 * Os_TE_518210 Os_TE_518203 Chr2 10001000 10001001 - RIREX_LTR 8828 0.0010 (3/2963) 0 * Os_TE_518202 Os_TE_518202 Chr2 10000996 10000995 + RIREX_LTR 8828 0.0010 (3/2964) 0 * Os_TE_518203 Os_TE_518192 Chr2 9998245 9998244 - ORSgTEMT00500102 149 0.0017 (5/2993) 0 * * Os_TE_518189 Chr2 9995918 9995695 + ORSgTEMT02400034 225 0.0478 (142/2971) 1 Intact Os_TE_518188 Os_TE_518188 Chr2 9995693 9995913 - ORSgTEMT02400148 214 0.0496 (148/2986) 1 Intact Os_TE_518189 Os_TE_518187 Chr2 9995512 9995513 + SC-8_LTR 4951 0.0003 (1/2993) 0 * Os_TE_518186 Os_TE_518186 Chr2 9995508 9995507 - SC-8_LTR 4951 0.0003 (1/2991) 0 * Os_TE_518187 Os_TE_518181 Chr2 9994587 9994586 + ORSgTEMT01700632 122 0.0013 (4/2966) 0 * Os_TE_518180 Os_TE_518180 Chr2 9994581 9994582 - STOWAWAY1_OS 149 0.0017 (5/2954) 0 * Os_TE_518181 Os_TE_518179 Chr2 9993810 9993811 - ORSgTEMT01602413 239 0.0994 (278/2797) 0 * * Os_TE_518176 Chr2 9993378 9993379 - STOWAWAY18_OS 216 0.8590 (2163/2518) 0 * * Os_TE_518156 Chr2 9991585 9991586 + RIREX_LTR 8828 0.0006 (1/1768) 0 * * Os_TE_518153 Chr2 9991439 9991440 - MDR1 7383 0.0007 (2/2711) -1 * * Os_TE_518144 Chr2 9987232 9987357 - ORSgTEMT00500471 125 0.8002 (2283/2853) 1 Intact * Os_TE_518123 Chr2 9977832 9977833 - SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_518122 Os_TE_518122 Chr2 9977828 9977827 + SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_518123 Os_TE_518117 Chr2 9973562 9973563 + AMYLTP 383 0.1450 (433/2987) 0 * Os_TE_518116 Os_TE_518116 Chr2 9973554 9973553 - AMYLTP 383 0.1630 (435/2669) 0 * Os_TE_518117 Os_TE_518104 Chr2 9968035 9968036 + ORSiCMCM00100019 2717 0.1215 (356/2930) 0 * Os_TE_518103 Os_TE_518103 Chr2 9968031 9968030 - TRUNCATOR2_LTR 2904 0.1439 (429/2981) 0 * Os_TE_518104 Os_TE_518101 Chr2 9967917 9967916 + DS-RICE2N 613 0.0688 (197/2865) 0 * * Os_TE_518083 Chr2 9958705 9958704 - TRUNCATOR 2918 0.0608 (181/2976) 0 * Os_TE_518082 Os_TE_518082 Chr2 9958704 9958705 + TRUNCATOR 2918 0.0651 (194/2980) 0 * Os_TE_518083 Os_TE_518057 Chr2 9949052 9949051 - STOWAWAY51_OS 246 0.0053 (16/2994) 0 * * Os_TE_518042 Chr2 9946491 9946490 + ORSgTEMT01601122 212 0.1300 (384/2953) 0 * Os_TE_518041 Os_TE_518041 Chr2 9946488 9946489 + ORSgTEMT01601122 212 0.1356 (402/2964) 0 * Os_TE_518042 Os_TE_518039 Chr2 9946431 9946432 - RIREX_LTR 8828 0.0068 (20/2937) 0 * Os_TE_518038 Os_TE_518038 Chr2 9946427 9946426 + RIREX_LTR 8828 0.0060 (18/2981) 0 * Os_TE_518039 Os_TE_518037 Chr2 9946333 9946334 + SZ-62LTR 3649 0.1376 (411/2986) 0 * Os_TE_518036 Os_TE_518036 Chr2 9946329 9946328 - SZ-62LTR 3649 0.1391 (416/2990) 0 * Os_TE_518037 Os_TE_518030 Chr2 9944847 9944700 + ORSgTEMT01701965 154 0.8717 (2588/2969) 1 Intact * Os_TE_518023 Chr2 9944405 9944176 + ORSgTEMT01400032 215 0.8427 (2148/2549) 1 Intact Os_TE_518019 Os_TE_518019 Chr2 9944163 9944358 + ORSgTEMT01400030 214 0.8715 (2598/2981) 1 Intact Os_TE_518023 Os_TE_518002 Chr2 9940643 9940644 - TESS 244 0.1140 (307/2694) 0 * * Os_TE_518000 Chr2 9940092 9939168 - JOUZHEN 596 0.6060 (1735/2863) 1 Intact Os_TE_517999 Os_TE_517999 Chr2 9939168 9940092 + JOUZHEN 596 0.6065 (1797/2963) 1 Intact Os_TE_518000 Os_TE_517995 Chr2 9938030 9938029 + ORSgTEMT01701101 133 0.1422 (422/2967) 0 * * Os_TE_517993 Chr2 9937800 9937574 - TREP215 239 0.8994 (2511/2792) 1 Intact Os_TE_517992 Os_TE_517992 Chr2 9937574 9937799 - ORSgTEMT01602082 215 0.8393 (1958/2333) 1 Intact Os_TE_517993 Os_TE_517985 Chr2 9933325 9933088 + STOWAWAY44_OS 240 0.8692 (2564/2950) 1 Intact Os_TE_517983 Os_TE_517983 Chr2 9933085 9933325 - STOWAWAY44_OS 240 0.8666 (2547/2939) 1 Intact Os_TE_517985 Os_TE_517978 Chr2 9928912 9928583 - OLO24 345 0.8998 (2603/2893) 1 Intact * Os_TE_517971 Chr2 9925750 9925749 - COPIA2-LTR_OS 6433 0.0004 (1/2627) 0 * * Os_TE_517967 Chr2 9925228 9925372 - TNR2A 152 0.8386 (2021/2410) 1 Intact * Os_TE_517945 Chr2 9908890 9908891 + ORSgTERT00200486 3946 0.0015 (4/2633) 0 * * Os_TE_517923 Chr2 9900487 9900488 - COPI2_LTR 4733 0.0003 (1/2959) 0 * Os_TE_517922 Os_TE_517922 Chr2 9900483 9900482 + COPI2_LTR 4733 0.0003 (1/2947) 0 * Os_TE_517923 Os_TE_517899 Chr2 9893787 9893788 - ORSgTEMT01601521 234 0.0003 (1/2877) 0 * * Os_TE_517895 Chr2 9891846 9891845 - ORSgTEMT02400246 177 0.0673 (201/2987) 0 * * Os_TE_517860 Chr2 9869636 9869635 + DS-RICE4N 715 0.1088 (305/2804) 0 * * Os_TE_517859 Chr2 9869460 9869461 - RETROSAT4_LTR 13504 0.0017 (5/2989) 0 * Os_TE_517858 Os_TE_517858 Chr2 9869456 9869455 + RETROSAT4_LTR 13504 0.0017 (5/2987) 0 * Os_TE_517859 Os_TE_517848 Chr2 9861222 9861223 - SC-3_LTR 5748 0.0073 (19/2616) 0 * Os_TE_517847 Os_TE_517847 Chr2 9861218 9861217 + ORSiTERTOOT00296 5553 0.0077 (20/2614) 0 * Os_TE_517848 Os_TE_517818 Chr2 9846733 9846424 + Cassandra_OS-LTR 764 0.8713 (2606/2991) 1 Solo_LTR * Os_TE_517804 Chr2 9842876 9842568 + ORSgTEMT02900076 336 0.8831 (2562/2901) 1 Intact * Os_TE_517784 Chr2 9837099 9837098 - ORSgTETN00200001 10994 0.0021 (6/2824) 0 * * Os_TE_517767 Chr2 9833436 9830830 - ORSgTETN00200001 10994 0.6495 (1825/2810) 1 Intact Os_TE_517766 Os_TE_517766 Chr2 9830831 9833436 + SPMLIKE 10989 0.6664 (1932/2899) 1 Intact Os_TE_517767 Os_TE_517761 Chr2 9826084 9826083 - BAJIELTR 4500 0.3132 (939/2998) 0 * * Os_TE_517758 Chr2 9824522 9824521 + TYPEH 309 0.0042 (9/2135) 0 * * Os_TE_517719 Chr2 9801018 9789313 - ORSgTETN00200001 10994 0.6392 (1834/2869) 1 Intact Os_TE_517713 Os_TE_517713 Chr2 9789313 9801018 + SPMLIKE 10989 0.6499 (1899/2922) 1 Intact Os_TE_517719 Os_TE_517698 Chr2 9786159 9786160 - ORSiTERT00200154 9386 0.0007 (2/2948) 0 * Os_TE_517697 Os_TE_517697 Chr2 9786153 9786152 + Cassandra_OS-LTR 764 0.0003 (1/2944) 0 * Os_TE_517698 Os_TE_517688 Chr2 9783506 9783505 - ORSiTETNOOT00216 3569 0.0320 (95/2966) 0 * * Os_TE_517681 Chr2 9782017 9782016 - RIRE2_LTR 11306 0.0415 (124/2991) 0 * * Os_TE_517680 Chr2 9781109 9781110 + COPIA2-LTR_OS 6433 0.0017 (5/2965) 0 * * Os_TE_517677 Chr2 9780175 9780176 + COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_517676 Os_TE_517676 Chr2 9780171 9780170 - COPI2_LTR 4733 0.0003 (1/2993) 0 * Os_TE_517677 Os_TE_517675 Chr2 9779731 9779732 + COPIA2-LTR_OS 6433 0.0017 (5/2994) 0 * Os_TE_517674 Os_TE_517674 Chr2 9779727 9779726 - COPIA2-LTR_OS 6433 0.0017 (5/2994) 0 * Os_TE_517675 Os_TE_517664 Chr2 9775784 9771959 - RETROSAT4_LTR 13504 0.6459 (1908/2954) 1 Solo_LTR Os_TE_517661 Os_TE_517661 Chr2 9771960 9775784 + RETROSAT4_LTR 13504 0.6260 (1764/2818) -1 Solo_LTR Os_TE_517664 Os_TE_517660 Chr2 9771865 9771866 + SZ-67LTR 1540 0.0018 (5/2815) 0 * * Os_TE_517642 Chr2 9766253 9766254 - SNAP-OL3 189 0.3080 (846/2747) 0 * * Os_TE_517637 Chr2 9764716 9764717 - COPI2_LTR 4733 0.0005 (1/1954) 0 * * Os_TE_517624 Chr2 9755212 9740611 - GYPSO_LTR 9828 0.8724 (1922/2203) 1 Intact * Os_TE_517561 Chr2 9725976 9725975 - TRUNCATOR2_LTR 2904 0.0010 (1/995) 0 * * Os_TE_517540 Chr2 9720909 9720908 - RIRE3_LTR 12054 0.0617 (129/2091) 0 * * Os_TE_517538 Chr2 9717983 9717982 + STOWAWAY11_OS 292 0.0579 (130/2245) 0 * Os_TE_517537 Os_TE_517537 Chr2 9717981 9717982 - STOWAWAY11_OS 292 0.0631 (116/1839) 0 * Os_TE_517538 Os_TE_517522 Chr2 9716473 9716262 - ORSgTEMT02400167 203 0.6981 (2016/2888) 1 Intact Os_TE_517518 Os_TE_517518 Chr2 9716259 9716473 + ORSgTEMT02400006 220 0.6914 (2012/2910) 1 Intact Os_TE_517522 Os_TE_517516 Chr2 9715184 9715183 - COPIA3-LTR_OS 5061 0.3221 (945/2934) 0 * * Os_TE_517513 Chr2 9715123 9715122 + SPMLIKE 10989 0.0608 (123/2023) 0 * * Os_TE_517506 Chr2 9709382 9709383 - COPIA2-LTR_OS 6433 0.0004 (1/2856) 0 * Os_TE_517505 Os_TE_517505 Chr2 9709378 9709377 + COPIA2-LTR_OS 6433 0.0004 (1/2856) 0 * Os_TE_517506 Os_TE_517504 Chr2 9709182 9709183 + COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_517503 Os_TE_517503 Chr2 9709178 9709177 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_517504 Os_TE_517414 Chr2 9658643 9658644 + RIREX_LTR 8828 0.0011 (3/2708) 0 * Os_TE_517413 Os_TE_517413 Chr2 9658639 9658638 - RIREX_LTR 8828 0.0011 (3/2819) 0 * Os_TE_517414 Os_TE_517412 Chr2 9657656 9657657 + SEVERIN-2 1952 0.0015 (4/2742) 0 * * Os_TE_517368 Chr2 9646547 9646546 - MDM2 312 0.3491 (1020/2922) 0 * * Os_TE_517352 Chr2 9640944 9640651 + STOWAWAY11_OS 292 0.8044 (2398/2981) 1 Intact Os_TE_517348 Os_TE_517348 Chr2 9640651 9640943 - STOWAWAY11_OS 292 0.8016 (2396/2989) 1 Intact Os_TE_517352 Os_TE_517342 Chr2 9639121 9639120 + TNR12 528 0.2149 (636/2960) 0 * * Os_TE_517339 Chr2 9637203 9629089 + GYPSY-B_LTR 7068 0.8005 (2396/2993) 1 Intact * Os_TE_517323 Chr2 9629038 9629037 - SEVERIN-2 1952 0.0010 (3/2965) 0 * * Os_TE_517255 Chr2 9607017 9606673 - Cassandra_OS-LTR 764 0.6701 (1932/2883) 1 Solo_LTR * Os_TE_517247 Chr2 9602373 9606669 + SZ-48LTR 3632 0.6596 (1872/2838) 1 Intact * Os_TE_517245 Chr2 9602319 9602318 + TELIA 141 0.0194 (52/2677) 0 * * Os_TE_517234 Chr2 9599004 9599003 - COPI2_LTR 4733 0.0003 (1/2993) 0 * * Os_TE_517226 Chr2 9596015 9594943 - RETRO2_LTR 12874 0.6483 (1875/2892) 1 Solo_LTR * Os_TE_517203 Chr2 9577448 9577449 + EnSpm-13_OS 11171 0.0004 (1/2777) 0 * Os_TE_517202 Os_TE_517202 Chr2 9577446 9577445 - EnSpm-13_OS 11171 0.0004 (1/2783) 0 * Os_TE_517203 Os_TE_517200 Chr2 9577165 9577164 + TRSA_OS 353 0.0004 (1/2728) 0 * * Os_TE_517193 Chr2 9575826 9575825 - RIREX_LTR 8828 0.0003 (1/2875) 0 * * Os_TE_517192 Chr2 9575563 9575564 + AMYLTP 383 0.0010 (3/2988) 0 * Os_TE_517191 Os_TE_517191 Chr2 9575555 9575554 - AMYLTP 383 0.0010 (3/2989) 0 * Os_TE_517192 Os_TE_517181 Chr2 9568725 9568726 + RETROSAT4_LTR 13504 0.2361 (695/2944) 0 * Os_TE_517180 Os_TE_517180 Chr2 9568721 9568720 - SZ-35LTR 3853 0.2522 (752/2982) 0 * Os_TE_517181 Os_TE_517179 Chr2 9568601 9568602 - RETROSAT2LTR 12796 0.1290 (375/2908) 0 * * Os_TE_517176 Chr2 9567218 9567219 - ORSgTEMT01601955 198 0.0017 (5/2988) 0 * * Os_TE_517174 Chr2 9566293 9566292 - DS-RICE2N 613 0.0013 (4/2991) 0 * Os_TE_517173 Os_TE_517173 Chr2 9566291 9566292 + DS-RICE2N 613 0.0013 (4/2980) 0 * Os_TE_517174 Os_TE_517168 Chr2 9564040 9564041 - RIREX_LTR 8828 0.0010 (3/2984) 0 * Os_TE_517167 Os_TE_517167 Chr2 9564036 9564035 + RIREX_LTR 8828 0.0010 (3/2981) 0 * Os_TE_517168 Os_TE_517164 Chr2 9562704 9562705 - HATOS1 3488 0.1384 (412/2977) 0 * Os_TE_517163 Os_TE_517163 Chr2 9562697 9562696 + QINNIU 528 0.1439 (429/2981) 0 * Os_TE_517164 Os_TE_517127 Chr2 9554325 9554324 + MuDR3_OS 8604 0.1116 (333/2985) 0 * * Os_TE_517108 Chr2 9542427 9542428 - AMYLTP 383 0.0003 (1/2982) 0 * Os_TE_517107 Os_TE_517107 Chr2 9542419 9542418 + AMYLTP 383 0.0003 (1/2980) 0 * Os_TE_517108 Os_TE_517093 Chr2 9533333 9533334 - STOLAB 312 0.0003 (1/2882) 0 * * Os_TE_517051 Chr2 9505407 9505406 + ORSgTEMT01701478 178 0.1422 (423/2975) 0 * Os_TE_517050 Os_TE_517050 Chr2 9505338 9505339 - STOWAWAY1_OS 149 0.1458 (435/2984) 0 * Os_TE_517051 Os_TE_517039 Chr2 9499774 9499775 + COPI2_LTR 4733 0.0003 (1/2991) 0 * Os_TE_517038 Os_TE_517038 Chr2 9499770 9499769 - COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_517039 Os_TE_517036 Chr2 9497332 9497333 - CASTAWAY 364 0.1413 (423/2994) 0 * * Os_TE_517027 Chr2 9495406 9495407 + COPIA2-LTR_OS 6433 0.0003 (1/2936) 0 * Os_TE_517026 Os_TE_517026 Chr2 9495402 9495401 - COPIA2-LTR_OS 6433 0.0003 (1/2932) 0 * Os_TE_517027 Os_TE_517004 Chr2 9474059 9485612 + SPMLIKE 10989 0.8717 (2501/2869) 1 Intact * Os_TE_517003 Chr2 9472801 9470989 + MERMITE18C 1473 0.8708 (2582/2965) 1 Intact Os_TE_516999 Os_TE_516999 Chr2 9470985 9472797 + MERMITE18C 1473 0.8677 (2565/2956) 1 Intact Os_TE_517003 Os_TE_516998 Chr2 9470786 9470787 - OSTE14 885 0.1391 (414/2976) 0 * Os_TE_516997 Os_TE_516997 Chr2 9470785 9470784 - OSTE1 801 0.1447 (432/2985) 0 * Os_TE_516998 Os_TE_516968 Chr2 9462053 9462054 + ORSiTERTOOT00296 5553 0.0003 (1/2985) 0 * Os_TE_516967 Os_TE_516967 Chr2 9462049 9462048 - SC-3_LTR 5748 0.0003 (1/2981) 0 * Os_TE_516968 Os_TE_516960 Chr2 9457575 9457574 + SZ-22_LTR 4403 0.0003 (1/2986) 0 * * Os_TE_516954 Chr2 9454801 9454802 + MPING 430 0.0005 (1/2179) 0 * Os_TE_516953 Os_TE_516953 Chr2 9454799 9454798 - MPING 430 0.0003 (1/2981) 0 * Os_TE_516954 Os_TE_516952 Chr2 9454779 9454517 + INDITTO 263 0.3228 (963/2983) 1 Intact * Os_TE_516947 Chr2 9454243 9454244 - SZ-22_LTR 4403 0.0020 (6/2965) 0 * Os_TE_516946 Os_TE_516946 Chr2 9454239 9454238 + ORSiTERTOOT00226 792 0.0021 (6/2841) 0 * Os_TE_516947 Os_TE_516909 Chr2 9451577 9451578 - INDITTO 263 0.1424 (425/2984) 0 * * Os_TE_516906 Chr2 9451310 9451311 + ORSgTETNOOT00908 242 0.0020 (6/2982) 0 * Os_TE_516905 Os_TE_516905 Chr2 9451305 9451304 + ORSgTETNOOT01219 231 0.0020 (6/2982) 0 * Os_TE_516906 Os_TE_516902 Chr2 9447437 9447436 + DASIA-2 1198 0.0003 (1/2981) 0 * * Os_TE_516875 Chr2 9440021 9440022 - MPING 430 0.0003 (1/2972) 0 * Os_TE_516874 Os_TE_516874 Chr2 9440019 9440018 + MPING 430 0.0003 (1/2947) 0 * Os_TE_516875 Os_TE_516856 Chr2 9437718 9437719 + TELIA 141 0.0004 (1/2420) 0 * * Os_TE_516855 Chr2 9437693 9437694 - SZ-22_LTR 4403 0.6354 (1896/2984) 0 * Os_TE_516854 Os_TE_516854 Chr2 9437689 9437688 + ORSiTERTOOT00226 792 0.6368 (1899/2982) 0 * Os_TE_516855 Os_TE_516830 Chr2 9432049 9432048 - RETROSAT2LTR 12796 0.4208 (1252/2975) 0 * * Os_TE_516784 Chr2 9415082 9415081 + OSTONOR1_LTR 6440 0.1399 (415/2967) 0 * * Os_TE_516778 Chr2 9410836 9410680 + ORSgTEMT01700759 147 0.3247 (944/2907) 1 Intact Os_TE_516777 Os_TE_516777 Chr2 9410683 9410833 - ORSgTEMT00200185 144 0.3249 (936/2881) 1 Intact Os_TE_516778 Os_TE_516765 Chr2 9407574 9401509 + OSTONOR1_LTR 6440 0.3225 (967/2998) 1 Intact Os_TE_516763 Os_TE_516763 Chr2 9401493 9407574 - ORSiTERT00100062 5674 0.3177 (951/2993) 1 Intact Os_TE_516765 Os_TE_516761 Chr2 9400593 9400592 + STOWAWAY51_OS 246 0.0003 (1/2980) 0 * Os_TE_516760 Os_TE_516760 Chr2 9400587 9400588 - STOWAWAY51_OS 246 0.0003 (1/2990) 0 * Os_TE_516761 Os_TE_516759 Chr2 9400318 9400319 - COPIA2-LTR_OS 6433 0.0013 (4/2993) 0 * * Os_TE_516752 Chr2 9397718 9397719 + ORSgTERT00201162 5982 0.0005 (1/2108) 0 * * Os_TE_516748 Chr2 9394336 9394335 - TNR2A 152 0.0003 (1/2982) 0 * * Os_TE_516747 Chr2 9393912 9393911 + SEVERIN-2 1952 0.0003 (1/2964) 0 * * Os_TE_516740 Chr2 9390311 9388578 + MERMITEB 1610 0.3283 (973/2964) 1 Intact Os_TE_516732 Os_TE_516732 Chr2 9388576 9390309 + MERMITEB 1610 0.3252 (963/2961) 1 Intact Os_TE_516740 Os_TE_516729 Chr2 9387716 9387715 + OSTONOR1_LTR 6440 0.0003 (1/2975) 0 * * Os_TE_516728 Chr2 9387633 9387634 - TRUNCATOR2_LTR 2904 0.0017 (5/2986) 0 * Os_TE_516727 Os_TE_516727 Chr2 9387629 9387628 + ORSiTERTOOT00028 8600 0.0013 (4/2975) 0 * Os_TE_516728 Os_TE_516644 Chr2 9284596 9284597 + COPIA2-LTR_OS 6433 0.0010 (1/989) 0 * Os_TE_516643 Os_TE_516643 Chr2 9284592 9284591 - COPIA2-LTR_OS 6433 0.0010 (1/991) 0 * Os_TE_516644 Os_TE_516634 Chr2 9280683 9280682 + TRUNCATOR 2918 0.0084 (3/357) -1 * * Os_TE_516599 Chr2 9253069 9253070 - COPI2_LTR 4733 0.0224 (66/2953) 0 * Os_TE_516598 Os_TE_516598 Chr2 9253065 9253064 + COPI2_LTR 4733 0.0158 (45/2853) 0 * Os_TE_516599 Os_TE_516595 Chr2 9252026 9252025 + ORSgTEMT00900230 250 0.6613 (1822/2755) 0 * * Os_TE_516594 Chr2 9251687 9246508 - SEVERIN-2 1952 0.8027 (952/1186) 1 Intact * Os_TE_516582 Chr2 9242090 9242091 + COPIA2-LTR_OS 6433 0.0010 (1/998) 0 * Os_TE_516581 Os_TE_516581 Chr2 9242086 9242085 - COPIA2-LTR_OS 6433 0.0010 (1/996) 0 * Os_TE_516582 Os_TE_516574 Chr2 9229879 9230459 - SZ-33LTR 575 0.5121 (992/1937) 1 Intact * Os_TE_516476 Chr2 9145733 9146077 + ORSgTEMT00101587 341 0.5482 (966/1762) 1 Intact * Os_TE_516453 Chr2 9136007 9136008 - RIREX_LTR 8828 0.0008 (1/1231) 0 * * Os_TE_516424 Chr2 9119015 9119014 - ORSgTETNOOT02514 257 0.0013 (4/2979) 0 * * Os_TE_516420 Chr2 9116036 9116037 - MDR2 6967 0.0010 (2/2054) 0 * * Os_TE_516402 Chr2 9114921 9115071 + ORSgTEMT01700505 154 0.5895 (978/1659) 1 Intact * Os_TE_516401 Chr2 9114652 9114281 - ORSgTEMT00600304 361 0.3626 (969/2672) 1 Intact * Os_TE_516396 Chr2 9113982 9114271 - SINE9_OS 293 0.3742 (952/2544) 1 Intact * Os_TE_516395 Chr2 9113915 9113914 - ORSgTEMT00502463 149 0.6464 (1729/2675) 0 * Os_TE_516394 Os_TE_516394 Chr2 9113910 9113911 + ORSgTEMT00501653 149 0.0010 (1/972) 0 * Os_TE_516395 Os_TE_516393 Chr2 9113850 9113849 + ORSgTEMT00502025 149 0.5395 (1134/2102) 0 * * Os_TE_516381 Chr2 9108321 9108320 + NDNA2TNA_OS 346 0.0010 (3/2979) 0 * * Os_TE_516379 Chr2 9107836 9107715 - ORSgTEMT00501758 147 0.3251 (955/2938) 1 Intact Os_TE_516377 Os_TE_516377 Chr2 9107709 9107836 - ORSgTEMT00502478 130 0.3284 (940/2862) 1 Intact Os_TE_516379 Os_TE_516375 Chr2 9106306 9106307 + HARB-1_OS 5166 0.0010 (3/2970) 0 * Os_TE_516374 Os_TE_516374 Chr2 9106305 9106304 - HARB-1_OS 5166 0.0010 (3/2965) 0 * Os_TE_516375 Os_TE_516364 Chr2 9102291 9102292 + COPIA2-LTR_OS 6433 0.0004 (1/2763) 0 * Os_TE_516363 Os_TE_516363 Chr2 9102287 9102286 - COPIA2-LTR_OS 6433 0.0003 (1/2888) 0 * Os_TE_516364 Os_TE_516358 Chr2 9101458 9101459 - RIREX_LTR 8828 0.0003 (1/2954) 0 * * Os_TE_516333 Chr2 9080961 9079997 - SZ-9LTR 965 0.3264 (975/2987) 1 Intact * Os_TE_516327 Chr2 9074564 9075528 + SZ-9LTR 965 0.3208 (957/2983) 1 Intact * Os_TE_516319 Chr2 9070596 9070597 + AMYLTP 383 0.0003 (1/2981) 0 * Os_TE_516318 Os_TE_516318 Chr2 9070588 9070587 - AMYLTP 383 0.0003 (1/2979) 0 * Os_TE_516319 Os_TE_516309 Chr2 9068758 9068757 - NDNA1TNA_OS 334 0.3214 (961/2990) 0.86 * * Os_TE_516308 Chr2 9068135 9068136 + ORSiTERTOOT00296 5553 0.0007 (2/2999) 0 * Os_TE_516307 Os_TE_516307 Chr2 9068131 9068130 - SC-3_LTR 5748 0.0003 (1/2997) 0 * Os_TE_516308 Os_TE_516306 Chr2 9064014 9064015 + RETRO1_LTR 8314 0.0010 (3/2923) 0 * Os_TE_516305 Os_TE_516305 Chr2 9064010 9064009 - RETRO1_LTR 8314 0.0010 (3/2921) 0 * Os_TE_516306 Os_TE_516239 Chr2 9047740 9047739 + ORSgTEMT01601122 212 0.0010 (3/2884) 0 * * Os_TE_516237 Chr2 9047657 9047656 + STOWAWAY21_OS 243 0.0440 (126/2863) 0 * Os_TE_516236 Os_TE_516236 Chr2 9047656 9047657 + ORSgTEMT01601122 212 0.0481 (139/2890) 0 * Os_TE_516237 Os_TE_516224 Chr2 9041547 9041546 + SEVERIN-2 1952 0.2438 (712/2921) 0 * * Os_TE_516221 Chr2 9040877 9040876 + ORSgTEMT00101674 340 0.0464 (135/2912) 0 * Os_TE_516220 Os_TE_516220 Chr2 9040876 9040877 + NDNA1TNA_OS 334 0.0468 (136/2904) 0 * Os_TE_516221 Os_TE_516205 Chr2 9034861 9034862 - INDITTO 263 0.0044 (5/1137) 0 * Os_TE_516204 Os_TE_516204 Chr2 9034859 9034858 + INDITTO 263 0.0044 (5/1139) 0 * Os_TE_516205 Os_TE_516197 Chr2 9033763 9033764 - STOWAWAY50_OS 174 0.0010 (3/2920) 0 * * Os_TE_516178 Chr2 9026737 9026736 + STOWAWAY51_OS 246 0.0003 (1/2992) 0 * Os_TE_516177 Os_TE_516177 Chr2 9026731 9026732 - STOWAWAY51_OS 246 0.0003 (1/2995) 0 * Os_TE_516178 Os_TE_516176 Chr2 9026457 9026458 - ORSgTETNOOT00118 134 0.0010 (3/2983) 0 * * Os_TE_516164 Chr2 9021491 9021492 + OSR3_LTR 5201 0.0003 (1/2992) 0 * Os_TE_516163 Os_TE_516163 Chr2 9021487 9021486 - OSR3_LTR 5201 0.0003 (1/2993) 0 * Os_TE_516164 Os_TE_516146 Chr2 9010169 9010170 + SZ-40LTR 2465 0.0087 (26/2976) 0 * Os_TE_516145 Os_TE_516145 Chr2 9010165 9010164 - SZ-40LTR 2465 0.0091 (27/2969) 0 * Os_TE_516146 Os_TE_516141 Chr2 9007916 9007917 + ORSgTERT00200633 1080 0.0003 (1/2986) 0 * * Os_TE_516140 Chr2 9003570 9003569 + STOWAWAY50_OS 174 0.0014 (4/2961) 0 * * Os_TE_516116 Chr2 8998722 8998721 + COPIA1-LTR_OS 9292 0.0010 (3/2949) 0 * * Os_TE_516115 Chr2 8998425 8998426 - AMYLTP 383 0.4718 (1312/2781) 0 * Os_TE_516114 Os_TE_516114 Chr2 8998417 8998416 + AMYLTP 383 0.4817 (1355/2813) 0 * Os_TE_516115 Os_TE_516107 Chr2 8997105 8997106 - RIREX_LTR 8828 0.0010 (3/2916) 0 * Os_TE_516106 Os_TE_516106 Chr2 8997101 8997100 + RIREX_LTR 8828 0.0010 (3/2924) 0 * Os_TE_516107 Os_TE_516047 Chr2 8973570 8973571 - HARB-1_OS 5166 0.0113 (26/2301) 0 * Os_TE_516046 Os_TE_516046 Chr2 8973568 8973567 + HARB-1_OS 5166 0.0133 (38/2864) 0 * Os_TE_516047 Os_TE_516045 Chr2 8973557 8973558 - OSTE33 1012 0.4146 (1122/2706) 0 * Os_TE_516044 Os_TE_516044 Chr2 8973547 8973546 + OSTE33 1012 0.4476 (1272/2842) 0 * Os_TE_516045 Os_TE_516029 Chr2 8970866 8970867 + ORSgTETNOOT01930 140 0.0010 (3/2990) 0 * * Os_TE_516017 Chr2 8968284 8968285 + F569 228 0.0007 (2/2751) 0 * Os_TE_516016 Os_TE_516016 Chr2 8968282 8968281 - F569 228 0.0007 (2/2731) 0 * Os_TE_516017 Os_TE_515945 Chr2 8951648 8951649 + NDNA2TNA_OS 346 0.3360 (813/2420) 0 * * Os_TE_515928 Chr2 8947337 8947338 - STOWAWAY45_OS 266 0.0014 (4/2856) 0 * * Os_TE_515923 Chr2 8943883 8943884 - COPIA2-LTR_OS 6433 0.0003 (1/2970) 0 * * Os_TE_515913 Chr2 8942501 8942500 - STOWAWAY51_OS 246 0.0117 (35/2983) 0 * * Os_TE_515904 Chr2 8935100 8935099 + STOWAWAY51_OS 246 0.0027 (8/2991) 0 * Os_TE_515903 Os_TE_515903 Chr2 8935094 8935095 - STOWAWAY51_OS 246 0.0023 (7/2991) 0 * Os_TE_515904 Os_TE_515881 Chr2 8929991 8929990 + STOWAWAY51_OS 246 0.0007 (2/2946) 0 * Os_TE_515880 Os_TE_515880 Chr2 8929985 8929986 + ORSgTEMT01601591 242 0.0007 (2/2970) 0 * Os_TE_515881 Os_TE_515825 Chr2 8913171 8913170 - ORSiTERT00200154 9386 0.0014 (4/2772) 0 * * Os_TE_515821 Chr2 8912238 8912239 + RETRO2_LTR 12874 0.0641 (192/2995) 0 * * Os_TE_515775 Chr2 8899171 8899170 - F524 291 0.0003 (1/2916) 0 * * Os_TE_515752 Chr2 8885719 8885718 + STOWAWAY51_OS 246 0.0003 (1/2983) 0 * Os_TE_515751 Os_TE_515751 Chr2 8885713 8885714 - STOWAWAY51_OS 246 0.0003 (1/2980) 0 * Os_TE_515752 Os_TE_515744 Chr2 8881839 8881840 + MPING 430 0.0061 (18/2975) 0 * Os_TE_515743 Os_TE_515743 Chr2 8881837 8881836 - MPING 430 0.0064 (19/2983) 0 * Os_TE_515744 Os_TE_515727 Chr2 8876942 8876943 - CLOUD 734 0.3988 (1048/2628) 0 * Os_TE_515726 Os_TE_515726 Chr2 8876936 8876935 - CLOUD 734 0.4620 (1348/2918) 0 * Os_TE_515727 Os_TE_515709 Chr2 8869575 8869576 + TWIF 586 0.0003 (1/2993) 0 * Os_TE_515708 Os_TE_515708 Chr2 8869568 8869567 - ORSiTETNOOT00134 607 0.0003 (1/2992) 0 * Os_TE_515709 Os_TE_515702 Chr2 8867754 8867755 - CENTRE 280 0.0003 (1/2995) 0 * * Os_TE_515685 Chr2 8854016 8852380 - MERMITE18E 1528 0.7687 (2233/2905) 1 Intact Os_TE_515683 Os_TE_515683 Chr2 8852378 8854015 - MERMITE18E 1528 0.7647 (2132/2788) 1 Intact Os_TE_515685 Os_TE_515682 Chr2 8849747 8849746 + SPMLIKE 10989 0.0079 (23/2915) 0 * * Os_TE_515681 Chr2 8849635 8849419 - ORSgTEMT02400246 177 0.7772 (2204/2836) 1 Intact * Os_TE_515654 Chr2 8847373 8848060 + STOWAWAY51_OS 246 0.8405 (2219/2640) 1 Intact * Os_TE_515652 Chr2 8847056 8847293 - ORSgTEMT01601365 238 0.7533 (1896/2517) 1 Intact * Os_TE_515640 Chr2 8838529 8838528 + ORSgTETNOOT00032 218 0.1914 (505/2639) 0 * * Os_TE_515636 Chr2 8834202 8834201 - SNAP-OL3 189 0.2391 (715/2991) 0 * * Os_TE_515622 Chr2 8829844 8829845 + COPIA2-LTR_OS 6433 0.0137 (41/2988) 0 * Os_TE_515621 Os_TE_515621 Chr2 8829840 8829839 - COPIA2-LTR_OS 6433 0.0146 (42/2881) 0 * Os_TE_515622 Os_TE_515620 Chr2 8829191 8828973 + SZ-28LTR 262 0.8183 (2310/2823) 1 Intact * Os_TE_515614 Chr2 8824802 8826312 + MERMITE18B 1306 0.7719 (2301/2981) 1 Intact * Os_TE_515613 Chr2 8824578 8824577 - ORSgTEMT00502257 142 0.1526 (415/2719) 0 * * Os_TE_515576 Chr2 8808409 8808408 - COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * * Os_TE_515539 Chr2 8797371 8797370 + RIREX_LTR 8828 0.0003 (1/2977) 0 * * Os_TE_515534 Chr2 8794606 8794607 + RETROSAT2LTR 12796 0.0003 (1/2969) 0 * Os_TE_515533 Os_TE_515533 Chr2 8794604 8794603 - RETROSAT2LTR 12796 0.0003 (1/2932) 0 * Os_TE_515534 Os_TE_515532 Chr2 8794008 8794007 + ORSgTETN00200005 1121 0.0105 (31/2962) 0 * Os_TE_515531 Os_TE_515531 Chr2 8794004 8794005 + CACTA-B 1103 0.0105 (31/2959) 0 * Os_TE_515532 Os_TE_515530 Chr2 8793898 8793899 - RIRE2_LTR 11306 0.0004 (1/2738) 0 * * Os_TE_515510 Chr2 8781565 8781566 + EnSpm-16_OS 13336 0.0024 (7/2960) 0 * Os_TE_515509 Os_TE_515509 Chr2 8781563 8781562 - EnSpm-16_OS 13336 0.0024 (7/2959) 0 * Os_TE_515510 Os_TE_515484 Chr2 8774267 8774266 - TRUNCATOR 2918 0.0017 (5/2966) 0 * Os_TE_515483 Os_TE_515483 Chr2 8774266 8774267 + TRUNCATOR 2918 0.0017 (5/2929) 0 * Os_TE_515484 Os_TE_515478 Chr2 8771053 8771052 + TRUNCATOR 2918 0.1240 (354/2854) 0 * Os_TE_515477 Os_TE_515477 Chr2 8771052 8771053 - TRUNCATOR 2918 0.1141 (341/2989) 0 * Os_TE_515478 Os_TE_515475 Chr2 8770449 8770448 + SEVERIN-2 1952 0.0630 (187/2966) 0 * * Os_TE_515474 Chr2 8770125 8770126 + ENSPM7_OS 10954 0.0104 (31/2995) 0 * * Os_TE_515472 Chr2 8769812 8769811 - RIREX_LTR 8828 0.0017 (5/2961) 0 * * Os_TE_515471 Chr2 8769424 8769425 - MuDR2_OS 6770 0.2551 (753/2952) 0 * Os_TE_515470 Os_TE_515470 Chr2 8769415 8769414 + MuDR2_OS 6770 0.2512 (706/2810) 0 * Os_TE_515471 Os_TE_515452 Chr2 8753207 8753208 + ORSiTERTOOT00296 5553 0.0003 (1/2985) 0 * * Os_TE_515430 Chr2 8744315 8744314 + ORSgTEMT00500526 152 0.0003 (1/2988) 0 * * Os_TE_515426 Chr2 8743791 8743792 + ORSiTERTOOT00226 792 0.0003 (1/2934) 0 * Os_TE_515425 Os_TE_515425 Chr2 8743787 8743786 - SZ-22_LTR 4403 0.0003 (1/2932) 0 * Os_TE_515426 Os_TE_515402 Chr2 8731974 8731973 + TNR8-1 418 0.0027 (8/2959) 0 * * Os_TE_515389 Chr2 8723078 8723079 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_515388 Os_TE_515388 Chr2 8723074 8723073 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_515389 Os_TE_515376 Chr2 8721427 8721428 - COPIA2-LTR_OS 6433 0.0003 (1/2974) 0 * Os_TE_515375 Os_TE_515375 Chr2 8721423 8721422 + COPIA2-LTR_OS 6433 0.0004 (1/2353) 0 * Os_TE_515376 Os_TE_515373 Chr2 8721143 8721144 - EnSpm-13_OS 11171 0.0003 (1/2919) 0 * Os_TE_515372 Os_TE_515372 Chr2 8721141 8721140 + EnSpm-13_OS 11171 0.0003 (1/2922) 0 * Os_TE_515373 Os_TE_515354 Chr2 8715788 8716027 - ORSgTEMT01602074 239 0.8682 (1739/2003) 1 Intact * Os_TE_515322 Chr2 8706405 8706406 - TRUNCATOR2_LTR 2904 0.0017 (5/2992) 0 * * Os_TE_515311 Chr2 8701064 8701063 + ORSgTETNOOT00908 242 0.0071 (21/2978) 0 * * Os_TE_515308 Chr2 8699183 8699182 - RETROSAT2LTR 12796 0.0003 (1/2975) 0 * * Os_TE_515304 Chr2 8698664 8698789 + ORSgTETNOOT00544 147 0.3337 (993/2976) 1 Intact * Os_TE_515302 Chr2 8697832 8697833 - RIREX_LTR 8828 0.0131 (33/2526) 0 * Os_TE_515301 Os_TE_515301 Chr2 8697828 8697827 + RIREX_LTR 8828 0.0104 (31/2980) 0 * Os_TE_515302 Os_TE_515281 Chr2 8686479 8686480 + STOWAWAY21_OS 243 0.1145 (135/1179) 0 * * Os_TE_515255 Chr2 8663269 8674532 + SPMLIKE 10989 0.3771 (431/1143) 1 Intact * Os_TE_515239 Chr2 8651940 8651941 - ORSgTERT00201216 11284 0.0086 (10/1162) 0 * Os_TE_515238 Os_TE_515238 Chr2 8651936 8651935 - RIRE2_LTR 11306 0.0212 (25/1181) 0 * Os_TE_515239 Os_TE_515235 Chr2 8651745 8651746 - CASTAWAY 364 0.0107 (17/1594) 0 * * Os_TE_515209 Chr2 8634945 8631034 - SZ-35LTR 3853 0.3851 (459/1192) 1 Intact Os_TE_515205 Os_TE_515205 Chr2 8631034 8634945 + RETROSAT4_LTR 13504 0.3763 (444/1180) 1 Solo_LTR Os_TE_515209 Os_TE_515178 Chr2 8622957 8622958 - SEVERIN-2 1952 0.0009 (1/1165) 0 * * Os_TE_515162 Chr2 8617839 8617838 - ENSPM4_OS 11610 0.0137 (25/1831) 0 * * Os_TE_515152 Chr2 8611899 8611637 - INDITTO 263 0.3818 (457/1197) 1 Intact Os_TE_515151 Os_TE_515151 Chr2 8611637 8611899 - ORSgTETNOOT00053 263 0.3893 (466/1197) 1 Intact Os_TE_515152 Os_TE_515147 Chr2 8608634 8608633 - TRUNCATOR 2918 0.3580 (425/1187) 0 * Os_TE_515146 Os_TE_515146 Chr2 8608633 8608634 + TRUNCATOR 2918 0.3703 (447/1207) 0 * Os_TE_515147 Os_TE_515118 Chr2 8586474 8586475 + MERMITE18E 1528 0.1490 (446/2993) 0 * Os_TE_515117 Os_TE_515117 Chr2 8586470 8586469 - MERMITE18E 1528 0.1418 (422/2976) 0 * Os_TE_515118 Os_TE_515085 Chr2 8564955 8575994 + SPMLIKE 10989 0.1323 (366/2766) 1 Intact * Os_TE_515032 Chr2 8543800 8543801 - ORSgTEMT00700002 381 0.0011 (3/2845) 0 * * Os_TE_515022 Chr2 8535397 8535398 + TWIF 586 0.0003 (1/2992) 0 * Os_TE_515021 Os_TE_515021 Chr2 8535390 8535389 - ORSiTETNOOT00134 607 0.0003 (1/2994) 0 * Os_TE_515022 Os_TE_515007 Chr2 8527855 8527854 + SC-8_LTR 4951 0.0007 (2/2991) 0 * * Os_TE_515001 Chr2 8522266 8522267 + ORSiTERTOOT00381 4988 0.0003 (1/2991) 0 * Os_TE_515000 Os_TE_515000 Chr2 8522262 8522261 - SC-8_LTR 4951 0.0003 (1/2989) 0 * Os_TE_515001 Os_TE_514995 Chr2 8520834 8520835 + SC-8_LTR 4951 0.0013 (4/2987) 0 * Os_TE_514994 Os_TE_514994 Chr2 8520830 8520829 - SC-8_LTR 4951 0.0013 (4/2991) 0 * Os_TE_514995 Os_TE_514993 Chr2 8517218 8517219 - COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * * Os_TE_514992 Chr2 8514699 8509319 + MDR2 6967 0.5002 (1208/2415) 1 Intact * Os_TE_514989 Chr2 8508369 8508368 + ORSgTETNOOT00906 136 0.0004 (1/2431) 0 * * Os_TE_514970 Chr2 8498428 8498427 - ORSgTEMT02000041 194 0.2216 (662/2988) 0 * * Os_TE_514964 Chr2 8490422 8490423 - ORSiTETNOOT00107 906 0.0005 (1/1822) 0 * * Os_TE_514947 Chr2 8484237 8480267 - BAJIELTR 4500 0.8439 (2520/2986) 1 Intact Os_TE_514925 Os_TE_514925 Chr2 8480262 8484237 + BAJIELTR 4500 0.8586 (2526/2942) 1 Intact Os_TE_514947 Os_TE_514920 Chr2 8478399 8478400 + RIREX_LTR 8828 0.0014 (4/2948) 0 * Os_TE_514919 Os_TE_514919 Chr2 8478395 8478394 - RIREX_LTR 8828 0.0014 (4/2962) 0 * Os_TE_514920 Os_TE_514917 Chr2 8476661 8476660 + OLO24 345 0.1774 (481/2711) 0 * * Os_TE_514914 Chr2 8476303 8476041 - ORSgTEMT00101174 225 0.8241 (2164/2626) 1 Intact Os_TE_514912 Os_TE_514912 Chr2 8476043 8476301 - STOWAWAY10_OS 259 0.5652 (633/1120) -1 Intact Os_TE_514914 Os_TE_514909 Chr2 8475719 8475718 + BAJIELTR 4500 0.1814 (501/2762) 0 * * Os_TE_514901 Chr2 8469854 8468451 + SZ-44LTR 1408 0.8399 (2512/2991) 1 Intact Os_TE_514899 Os_TE_514899 Chr2 8468449 8469854 - SZ-20LTR 1395 0.8382 (2508/2992) 1 Intact Os_TE_514901 Os_TE_514879 Chr2 8454351 8454352 + MUDRN2_OS 756 0.0057 (17/2976) 0 * Os_TE_514878 Os_TE_514878 Chr2 8454343 8454342 - MUDRN3_OS 903 0.0064 (19/2977) 0 * Os_TE_514879 Os_TE_514877 Chr2 8453896 8453897 - RIRE2_LTR 11306 0.0007 (2/2921) 0 * Os_TE_514876 Os_TE_514876 Chr2 8453892 8453891 + RIREX_LTR 8828 0.0007 (2/2929) 0 * Os_TE_514877 Os_TE_514858 Chr2 8444482 8443543 + CACTA-D 1038 0.8328 (2346/2817) 1 Intact * Os_TE_514838 Chr2 8438270 8439664 + RIRE1_LTR 8322 0.8567 (2529/2952) 1 Solo_LTR * Os_TE_514832 Chr2 8434239 8434238 + STOWAWAY50_OS 174 0.1704 (510/2993) 0 * Os_TE_514831 Os_TE_514831 Chr2 8434238 8434239 + ORSgTEMT01700715 134 0.1702 (509/2991) 0 * Os_TE_514832 Os_TE_514823 Chr2 8431824 8431293 - SZ-33LTR 575 0.8457 (2526/2987) 1 Intact Os_TE_514815 Os_TE_514815 Chr2 8430547 8431824 + ORSiTERTOOT00291 11421 0.8417 (2504/2975) 1 Intact Os_TE_514823 Os_TE_514796 Chr2 8425385 8425384 + OSTE18 129 0.1614 (481/2980) 0 * * Os_TE_514795 Chr2 8424870 8424594 - KIDDOC 275 0.8503 (2545/2993) 1 Intact Os_TE_514793 Os_TE_514793 Chr2 8424593 8424870 + KIDDOC 275 0.8484 (2535/2988) 1 Intact Os_TE_514795 Os_TE_514791 Chr2 8423987 8423988 + TWIFB1 3737 0.1585 (473/2985) 0 * * Os_TE_514790 Chr2 8423980 8423979 + TWIFB1 3737 0.0003 (1/2940) 0 * * Os_TE_514785 Chr2 8420556 8420555 - OSTE15 1168 0.1598 (476/2979) 0 * * Os_TE_514783 Chr2 8420120 8420119 - COWARD 200 0.1494 (425/2845) 0 * * Os_TE_514781 Chr2 8420027 8419880 - ORSiTEMT03300001 145 0.8443 (2446/2897) 1 Intact * Os_TE_514768 Chr2 8418007 8417701 - STOLAB 312 0.2595 (708/2728) 1 Intact Os_TE_514767 Os_TE_514767 Chr2 8417698 8418007 + STOLAB 312 0.2616 (717/2741) 1 Intact Os_TE_514768 Os_TE_514748 Chr2 8412441 8412204 + ORSgTEMT01602188 240 0.2116 (626/2959) -1 Intact Os_TE_514746 Os_TE_514746 Chr2 8412204 8412441 + ORSgTEMT01602580 283 0.2008 (585/2914) 1 Intact Os_TE_514748 Os_TE_514734 Chr2 8400699 8400700 - RIREX_LTR 8828 0.0003 (1/2994) 0 * Os_TE_514733 Os_TE_514733 Chr2 8400695 8400694 + RIREX_LTR 8828 0.0003 (1/2991) 0 * Os_TE_514734 Os_TE_514728 Chr2 8395539 8395540 + TRUNCATOR2_LTR 2904 0.7678 (2076/2704) 0 * * Os_TE_514710 Chr2 8388247 8388248 - SZLTR 1249 0.7880 (2316/2939) 0 * * Os_TE_514700 Chr2 8382684 8382683 - SEVERIN-2 1952 0.2029 (544/2681) 0 * * Os_TE_514698 Chr2 8380125 8380126 + INDITTO 263 0.1599 (478/2989) 0 * Os_TE_514697 Os_TE_514697 Chr2 8380123 8380122 - INDITTO 263 0.1600 (479/2993) 0 * Os_TE_514698 Os_TE_514676 Chr2 8367344 8367345 + RIREX_LTR 8828 0.0014 (4/2890) 0 * Os_TE_514675 Os_TE_514675 Chr2 8367307 8367306 - RIREX_LTR 8828 0.0010 (3/2945) 0 * Os_TE_514676 Os_TE_514670 Chr2 8365700 8365938 + ORSgTEMT01601934 207 0.8384 (2366/2822) 1 Intact * Os_TE_514664 Chr2 8358761 8358621 - ORSgTEMT00502287 149 0.8313 (2429/2922) 1 Intact * Os_TE_514657 Chr2 8357369 8357368 + ORSgTEMT01400031 216 0.1923 (547/2845) 0 * Os_TE_514656 Os_TE_514656 Chr2 8357366 8357367 + ORSgTEMT01400040 213 0.1719 (482/2804) 0 * Os_TE_514657 Os_TE_514655 Chr2 8356953 8352665 - SZ-62LTR 3649 0.1984 (582/2933) 1 Intact Os_TE_514650 Os_TE_514650 Chr2 8352665 8356953 + SZ-62LTR 3649 0.1942 (580/2987) 1 Intact Os_TE_514655 Os_TE_514649 Chr2 8351571 8351572 + NDNA1TNA_OS 334 0.1765 (526/2981) 0 * Os_TE_514648 Os_TE_514648 Chr2 8351569 8351568 - NDNA1TNA_OS 334 0.1739 (516/2968) 0 * Os_TE_514649 Os_TE_514614 Chr2 8340979 8339485 - SZ-10LTR 1412 0.8275 (2417/2921) 1 Intact Os_TE_514607 Os_TE_514607 Chr2 8328962 8340979 - ORSiTERTOOT00271 11428 0.8298 (2476/2984) 1 Intact Os_TE_514614 Os_TE_514598 Chr2 8322958 8322959 + STOWAWAY51_OS 246 0.0003 (1/2933) 0 * * Os_TE_514577 Chr2 8317260 8317259 + ORSgTEMT01601122 212 0.6085 (1798/2955) 0 * Os_TE_514576 Os_TE_514576 Chr2 8317259 8317260 + STOWAWAY21_OS 243 0.6094 (1802/2957) 0 * Os_TE_514577 Os_TE_514569 Chr2 8311457 8311458 - SC-8_LTR 4951 0.0007 (2/2986) 0 * Os_TE_514568 Os_TE_514568 Chr2 8311453 8311452 + SC-8_LTR 4951 0.0007 (2/2991) 0 * Os_TE_514569 Os_TE_514567 Chr2 8310493 8310494 + ORSiTERTOOT00296 5553 0.0013 (4/2974) 0 * Os_TE_514566 Os_TE_514566 Chr2 8310489 8310488 - SC-3_LTR 5748 0.0013 (4/2970) 0 * Os_TE_514567 Os_TE_514559 Chr2 8302275 8302276 + ORSiTERTOOT00296 5553 0.0003 (1/2975) 0 * Os_TE_514558 Os_TE_514558 Chr2 8302271 8302270 - SC-3_LTR 5748 0.0003 (1/2964) 0 * Os_TE_514559 Os_TE_514555 Chr2 8301399 8301400 + ORSiTERTOOT00296 5553 0.0003 (1/2995) 0 * Os_TE_514554 Os_TE_514554 Chr2 8301395 8301394 - SC-3_LTR 5748 0.0003 (1/2995) 0 * Os_TE_514555 Os_TE_514551 Chr2 8299449 8299448 + ORSgTEMT01900028 316 0.6170 (1827/2961) 0 * * Os_TE_514550 Chr2 8299445 8299446 - ORSgTEMT01900024 348 0.6117 (1793/2931) 0 * Os_TE_514549 Os_TE_514549 Chr2 8299440 8299439 - ORSgTEMT01900052 340 0.0042 (5/1191) 0 * Os_TE_514550 Os_TE_514531 Chr2 8290974 8290973 + SZ-38 8643 0.0009 (2/2279) 0 * * Os_TE_514521 Chr2 8286861 8286862 - COPIA2-LTR_OS 6433 0.0004 (1/2472) 0 * * Os_TE_514520 Chr2 8286777 8286776 - ORSgTEMT00901388 250 0.5978 (1668/2790) 0 * * Os_TE_514472 Chr2 8272955 8272956 - SINE03_OS 360 0.7769 (1720/2214) 0 * * Os_TE_514471 Chr2 8272740 8271658 + CACTA-B 1103 0.2069 (450/2175) 1 Intact Os_TE_514470 Os_TE_514470 Chr2 8271657 8272737 - CACTA-H 1152 0.2473 (567/2293) 1 Intact Os_TE_514471 Os_TE_514459 Chr2 8262520 8262521 - MERMITE18E 1528 0.2402 (719/2993) 0 * * Os_TE_514442 Chr2 8257580 8256215 + OSTE14 885 0.7702 (2292/2976) 1 Intact Os_TE_514439 Os_TE_514439 Chr2 8256213 8257578 - OSTE1 801 0.7848 (2309/2942) 1 Intact Os_TE_514442 Os_TE_514436 Chr2 8255441 8255871 - ORSgTEMT01800052 396 0.7839 (2267/2892) 1 Intact * Os_TE_514427 Chr2 8254404 8254405 + CLOUD-4 520 0.2466 (707/2867) 0 * * Os_TE_514425 Chr2 8254215 8254214 + ORSgTETNOOT00908 242 0.2449 (724/2956) 0 * * Os_TE_514419 Chr2 8252950 8252949 + ORSgTEMT01702143 140 0.2489 (739/2969) 0 * * Os_TE_514413 Chr2 8249749 8249750 - RETROSAT3_LTR 11537 0.0033 (10/2987) 0 * Os_TE_514412 Os_TE_514412 Chr2 8249745 8249744 + RETROSAT3_LTR 11537 0.0033 (10/2988) 0 * Os_TE_514413 Os_TE_514410 Chr2 8249603 8249602 + ORSiTERTOOT00296 5553 0.0003 (1/2986) 0 * * Os_TE_514409 Chr2 8249460 8249461 + ORSiTERTOOT00296 5553 0.0003 (1/2987) 0 * Os_TE_514408 Os_TE_514408 Chr2 8249456 8249455 - SC-3_LTR 5748 0.0003 (1/2989) 0 * Os_TE_514409 Os_TE_514357 Chr2 8230785 8230786 + COPI2_LTR 4733 0.0003 (1/2996) 0 * * Os_TE_514352 Chr2 8229026 8229027 + COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_514351 Os_TE_514351 Chr2 8229022 8229021 - COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_514352 Os_TE_514350 Chr2 8227729 8225924 - RPO_OS 1983 0.2125 (559/2631) 1 Intact * Os_TE_514328 Chr2 8213156 8213155 - ORSiTEMT01000008 242 0.3117 (929/2980) 0 * * Os_TE_514300 Chr2 8206688 8206689 - MPING 430 0.0009 (2/2329) 0 * Os_TE_514299 Os_TE_514299 Chr2 8206686 8206685 + MPING 430 0.0007 (2/2856) 0 * Os_TE_514300 Os_TE_514273 Chr2 8200120 8199966 - ORSgTEMT01701348 105 0.7027 (2094/2980) 1 Intact * Os_TE_514250 Chr2 8193959 8193960 + ORSiTERTOOT00226 792 0.0007 (2/2994) 0 * * Os_TE_514235 Chr2 8190812 8190811 + ORSgTEMT00900757 235 0.3153 (939/2978) 0 * Os_TE_514234 Os_TE_514234 Chr2 8190803 8190804 - ORSgTEMT00901200 250 0.3152 (938/2976) 0 * Os_TE_514235 Os_TE_514232 Chr2 8190464 8189733 - CASTAWAY 364 0.7083 (2071/2924) 1 Intact * Os_TE_514207 Chr2 8187713 8187712 - ORSgTEMT00900099 250 0.3118 (927/2973) 0 * Os_TE_514206 Os_TE_514206 Chr2 8187711 8187712 - ORSgTEMT00901345 248 0.3119 (928/2975) 0 * Os_TE_514207 Os_TE_514205 Chr2 8187663 8187664 - ORSiTETNOOT00134 607 0.0003 (1/2972) 0 * * Os_TE_514203 Chr2 8187434 8187433 + ORSgTETNOOT00281 259 0.3069 (914/2978) 0 * Os_TE_514202 Os_TE_514202 Chr2 8187400 8187401 + ORSgTETNOOT00792 273 0.2523 (705/2794) 0 * Os_TE_514203 Os_TE_514174 Chr2 8184564 8184565 - OSLINE1-2 7128 0.0003 (1/2930) 0 * * Os_TE_514170 Chr2 8176768 8176769 - ORSgTERT00200961 124 0.0003 (1/2976) 0 * * Os_TE_514168 Chr2 8176271 8175938 + ORSgTEMT00101341 314 0.7034 (2082/2960) 1 Intact * Os_TE_514140 Chr2 8160408 8160409 - RIRE3A_LTR 10580 0.0126 (37/2934) 0 * Os_TE_514139 Os_TE_514139 Chr2 8160404 8160403 + ORSiTERTOOT00027 10853 0.0122 (36/2940) 0 * Os_TE_514140 Os_TE_514076 Chr2 8133503 8133504 + TELIA 141 0.0003 (1/2953) 0 * Os_TE_514075 Os_TE_514075 Chr2 8133495 8133494 - TELIA 141 0.0003 (1/2967) 0 * Os_TE_514076 Os_TE_514052 Chr2 8128188 8128189 + AMYLTP 383 0.0313 (93/2975) 0 * Os_TE_514051 Os_TE_514051 Chr2 8128180 8128179 - AMYLTP 383 0.0299 (89/2976) 0 * Os_TE_514052 Os_TE_514034 Chr2 8125071 8125072 - MPING 430 0.0080 (24/2992) 0 * Os_TE_514033 Os_TE_514033 Chr2 8125069 8125068 + MPING 430 0.0074 (22/2991) 0 * Os_TE_514034 Os_TE_513999 Chr2 8115211 8115212 + TWIF 586 0.0021 (6/2923) 0 * Os_TE_513998 Os_TE_513998 Chr2 8115204 8115203 - ORSiTETNOOT00134 607 0.0020 (6/2942) 0 * Os_TE_513999 Os_TE_513996 Chr2 8115027 8115026 + TWIFB1 3737 0.0007 (2/2985) 0 * * Os_TE_513986 Chr2 8109025 8109026 + RIREX_LTR 8828 0.0036 (6/1669) 0 * * Os_TE_513980 Chr2 8104592 8104438 + ORSgTEMT01700012 149 0.5076 (1443/2843) 1 Intact * Os_TE_513976 Chr2 8103752 8100599 + SZ-48LTR 3632 0.4847 (1439/2969) 1 Intact Os_TE_513970 Os_TE_513970 Chr2 8100599 8103752 - SZ-48LTR 3632 0.4903 (1439/2935) 1 Intact Os_TE_513976 Os_TE_513959 Chr2 8095485 8095484 - MERMITE18A 532 0.2925 (129/441) -1 * * Os_TE_513956 Chr2 8095165 8095166 + MERMITE-18 1263 0.0693 (197/2842) 0 * Os_TE_513955 Os_TE_513955 Chr2 8095157 8095156 + MERMITE-18 1263 0.0248 (68/2747) 0 * Os_TE_513956 Os_TE_513920 Chr2 8079778 8083492 - BAJIELTR 4500 0.4874 (1454/2983) 1 Intact * Os_TE_513917 Chr2 8078834 8078135 + ORSgTEMT00600502 360 0.4793 (1423/2969) 1 Intact Os_TE_513909 Os_TE_513909 Chr2 8078129 8078831 - ORSgTEMT00600085 364 0.4423 (1223/2765) 1 Intact Os_TE_513917 Os_TE_513904 Chr2 8074194 8074195 - ORSgTEMT01602413 239 0.4765 (1290/2707) 0 * * Os_TE_513903 Chr2 8074158 8073074 - COPIA1-LTR_OS 9292 0.5427 (1455/2681) 1 Solo_LTR Os_TE_513899 Os_TE_513899 Chr2 8073074 8074158 + COPIA1-LTR_OS 9292 0.4923 (1413/2870) 1 Solo_LTR Os_TE_513903 Os_TE_513896 Chr2 8072659 8072658 + SPMLIKE 10989 0.0283 (84/2963) 0 * * Os_TE_513837 Chr2 8052411 8052412 - CPSC2_LTR 5202 0.0007 (2/2993) 0 * * Os_TE_513834 Chr2 8049796 8049795 - STOWAWAY50_OS 174 0.5210 (1527/2931) 0 * * Os_TE_513831 Chr2 8049542 8049775 + ORSgTEMT01601073 232 0.4813 (1419/2948) 1 Intact * Os_TE_513828 Chr2 8048639 8048640 + ORSgTEMT00101341 314 0.4464 (1265/2834) 0 * * Os_TE_513827 Chr2 8048074 8048073 + COPIA1-LTR_OS 9292 0.5271 (1565/2969) 0 * * Os_TE_513813 Chr2 8039750 8041958 - MERMITE18B 1306 0.4738 (1392/2938) 1 Intact * Os_TE_513807 Chr2 8038971 8038970 + SPMLIKE 10989 0.0003 (1/2886) 0 * * Os_TE_513804 Chr2 8038330 8038547 - ORSgTEMT01602420 228 0.4945 (1439/2910) 1 Intact * Os_TE_513751 Chr2 8012593 8012594 - SC-8_LTR 4951 0.0003 (1/2972) 0 * Os_TE_513750 Os_TE_513750 Chr2 8012589 8012588 + SC-8_LTR 4951 0.0003 (1/2975) 0 * Os_TE_513751 Os_TE_513721 Chr2 7988967 7988968 + MPING 430 0.0003 (1/2955) 0 * Os_TE_513720 Os_TE_513720 Chr2 7988965 7988964 - MPING 430 0.0003 (1/2945) 0 * Os_TE_513721 Os_TE_513715 Chr2 7984689 7984690 - COPIA2-LTR_OS 6433 0.0003 (1/2957) 0 * Os_TE_513714 Os_TE_513714 Chr2 7984685 7984684 + COPIA2-LTR_OS 6433 0.0003 (1/2969) 0 * Os_TE_513715 Os_TE_513712 Chr2 7983882 7983883 + ORSgTEMT01400009 212 0.6633 (1956/2949) 0 * * Os_TE_513709 Chr2 7983491 7983490 - EnSpm-13_OS 11171 0.0003 (1/2956) 0 * * Os_TE_513706 Chr2 7982685 7982684 + STOWAWAY20_OS 278 0.0017 (5/2893) 0 * * Os_TE_513705 Chr2 7982150 7982149 - TREP219 104 0.0017 (5/2974) 0 * * Os_TE_513703 Chr2 7981995 7981996 - CACTA-M 1129 0.0017 (5/2930) 0 * Os_TE_513702 Os_TE_513702 Chr2 7981993 7981992 + CACTA-I 1124 0.0013 (4/2969) 0 * Os_TE_513703 Os_TE_513701 Chr2 7981888 7981720 - ORSgTEMT02400147 179 0.5744 (1031/1795) 1 Intact * Os_TE_513684 Chr2 7971550 7971399 + ORSgTEMT01700715 134 0.3423 (1023/2989) 1 Intact Os_TE_513683 Os_TE_513683 Chr2 7971406 7971547 + ORSgTEMT01701265 147 0.3413 (1018/2983) 1 Intact Os_TE_513684 Os_TE_513677 Chr2 7968493 7968494 - ORSgTEMT01601493 303 0.6641 (1957/2947) 0 * * Os_TE_513670 Chr2 7967817 7967999 - ORSgTEMT02000040 196 0.3461 (1009/2915) 1 Intact * Os_TE_513653 Chr2 7957762 7957761 - SEVERIN-2 1952 0.6537 (1863/2850) 0 * * Os_TE_513649 Chr2 7957073 7956815 - STOWAWAY17_OS 259 0.2036 (606/2977) 1 Intact Os_TE_513648 Os_TE_513648 Chr2 7956815 7957073 + ORSgTETNOOT01225 240 0.2045 (609/2978) 1 Intact Os_TE_513649 Os_TE_513639 Chr2 7953784 7954754 - RIRE5-LTR_OS 6427 0.8103 (1038/1281) 1 Solo_LTR * Os_TE_513630 Chr2 7947480 7947825 + OLO24 345 0.3542 (1028/2902) 1 Intact * Os_TE_513629 Chr2 7947302 7947303 + TRUNCATOR2_LTR 2904 0.0911 (266/2920) 0 * * Os_TE_513626 Chr2 7945179 7945178 - COPI2_LTR 4733 0.0014 (4/2926) 0 * * Os_TE_513622 Chr2 7939810 7939811 + MPING 430 0.0010 (3/2959) 0 * Os_TE_513621 Os_TE_513621 Chr2 7939808 7939807 - MPING 430 0.0010 (3/2930) 0 * Os_TE_513622 Os_TE_513606 Chr2 7934652 7934651 - ORSiTERT00100062 5674 0.0005 (1/1847) 0 * * Os_TE_513589 Chr2 7929034 7929033 + RIREX_LTR 8828 0.0008 (1/1321) 0 * * Os_TE_513573 Chr2 7927682 7927683 - RIREX_LTR 8828 0.0008 (1/1300) 0 * Os_TE_513572 Os_TE_513572 Chr2 7927678 7927677 + RIREX_LTR 8828 0.0008 (1/1300) 0 * Os_TE_513573 Os_TE_513421 Chr2 7857939 7857938 + RIRE3A_LTR 10580 0.0003 (1/2994) 0 * * Os_TE_513407 Chr2 7846304 7846303 + SC-8_LTR 4951 0.0003 (1/2990) 0 * * Os_TE_513328 Chr2 7817684 7817685 + ENSPM3_OS 10837 0.0017 (5/2991) 0 * * Os_TE_513324 Chr2 7816433 7816432 - RIRE2_LTR 11306 0.1244 (243/1954) -1 * * Os_TE_513297 Chr2 7805724 7805723 + RIRE3_LTR 12054 0.0502 (149/2968) 0 * * Os_TE_513268 Chr2 7800605 7800606 + OSMAR1 5265 0.0014 (4/2898) 0 * * Os_TE_513230 Chr2 7780646 7780647 + ORSiTERTOOT00226 792 0.0020 (6/2980) 0 * * Os_TE_513203 Chr2 7774305 7774306 + ORSgTEMT00600272 361 0.5350 (1550/2897) 0 * * Os_TE_513187 Chr2 7760790 7760789 - ORSgTEMT00600085 364 0.0017 (5/2998) 0 * * Os_TE_513167 Chr2 7756713 7756712 - RETROSAT2LTRA 3112 0.0540 (161/2983) 0 * * Os_TE_513163 Chr2 7754609 7754608 - RETROSAT3_LTR 11537 0.0568 (162/2854) 0 * * Os_TE_513157 Chr2 7752511 7752512 - NDNA1TNA_OS 334 0.0004 (1/2835) 0 * * Os_TE_513149 Chr2 7744501 7744502 + COPI2_LTR 4733 0.0010 (3/2996) 0 * Os_TE_513148 Os_TE_513148 Chr2 7744497 7744496 - COPI2_LTR 4733 0.0010 (3/2991) 0 * Os_TE_513149 Os_TE_513137 Chr2 7741435 7741436 + RETROSAT4_LTR 13504 0.0017 (5/2992) 0 * * Os_TE_513134 Chr2 7741074 7737089 + RETROSAT4_LTR 13504 0.3245 (954/2940) 1 Solo_LTR Os_TE_513131 Os_TE_513131 Chr2 7737089 7741074 - RETROSAT4_LTR 13504 0.3407 (1020/2994) 1 Solo_LTR Os_TE_513134 Os_TE_513128 Chr2 7736034 7736035 - TRUNCATOR2_LTR 2904 0.0007 (2/2954) 0 * Os_TE_513127 Os_TE_513127 Chr2 7736030 7736029 + ORSiCMCM00100019 2717 0.0007 (2/2952) 0 * Os_TE_513128 Os_TE_513079 Chr2 7723924 7723923 - FOCUS 257 0.0011 (3/2850) 0 * * Os_TE_513076 Chr2 7719670 7719671 - SC-8_LTR 4951 0.0003 (1/2995) 0 * Os_TE_513075 Os_TE_513075 Chr2 7719666 7719665 + SC-8_LTR 4951 0.0003 (1/2997) 0 * Os_TE_513076 Os_TE_513017 Chr2 7690148 7690149 + TWIF 586 0.0004 (1/2724) 0 * * Os_TE_513006 Chr2 7688628 7688629 - RIREX_LTR 8828 0.0003 (1/2942) 0 * * Os_TE_512994 Chr2 7681391 7681392 + TRUNCATOR2_LTR 2904 0.0027 (8/2991) 0 * Os_TE_512993 Os_TE_512993 Chr2 7681387 7681386 - TRUNCATOR2_LTR 2904 0.0027 (8/2999) 0 * Os_TE_512994 Os_TE_512979 Chr2 7674665 7667861 - RIREX_LTR 8828 0.2246 (662/2948) 1 Intact * Os_TE_512968 Chr2 7664810 7664811 - SC-4_LTR 5218 0.0003 (1/2985) 0 * Os_TE_512967 Os_TE_512967 Chr2 7664806 7664805 + SC-4_LTR 5218 0.0003 (1/2981) 0 * Os_TE_512968 Os_TE_512966 Chr2 7664310 7664311 + COPIA2-LTR_OS 6433 0.0003 (1/2973) 0 * Os_TE_512965 Os_TE_512965 Chr2 7664306 7664305 - COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_512966 Os_TE_512957 Chr2 7661492 7661493 + ORSiTERTOOT00088 856 0.0003 (1/2972) 0 * * Os_TE_512934 Chr2 7655696 7655695 - SINE03_OS 360 0.2799 (825/2948) 0 * * Os_TE_512929 Chr2 7650662 7650663 + ORSiTERTOOT00296 5553 0.0003 (1/2990) 0 * Os_TE_512928 Os_TE_512928 Chr2 7650658 7650657 - SC-3_LTR 5748 0.0003 (1/2996) 0 * Os_TE_512929 Os_TE_512890 Chr2 7628895 7628896 + INDITTO 263 0.0920 (274/2978) 0 * Os_TE_512889 Os_TE_512889 Chr2 7628893 7628892 - INDITTO 263 0.0893 (266/2978) 0 * Os_TE_512890 Os_TE_512868 Chr2 7611908 7611907 + TREP219 104 0.0004 (1/2536) 0 * * Os_TE_512842 Chr2 7608482 7608483 - ORSgTEMT02400179 221 0.0013 (4/2967) 0 * Os_TE_512841 Os_TE_512841 Chr2 7608481 7608480 - TYPEM 227 0.0013 (4/2981) 0 * Os_TE_512842 Os_TE_512824 Chr2 7604689 7604690 + ORSgTEMT00502286 153 0.0003 (1/2953) 0 * * Os_TE_512804 Chr2 7593566 7593565 + OSTE33 1012 0.0080 (24/2993) 0 * Os_TE_512803 Os_TE_512803 Chr2 7593563 7593564 + OSTE33 1012 0.0090 (27/2995) 0 * Os_TE_512804 Os_TE_512785 Chr2 7587875 7587874 + SC-9_LTR 5279 0.0005 (1/2020) 0 * * Os_TE_512684 Chr2 7553993 7553994 - TESS 244 0.0034 (10/2969) 0 * Os_TE_512683 Os_TE_512683 Chr2 7553986 7553985 + TESS 244 0.0037 (11/2968) 0 * Os_TE_512684 Os_TE_512682 Chr2 7553661 7553315 - NDNA2TNA_OS 346 0.3070 (907/2954) 1 Intact Os_TE_512681 Os_TE_512681 Chr2 7553315 7553661 + NDNA2TNA_OS 346 0.3132 (931/2973) 1 Intact Os_TE_512682 Os_TE_512673 Chr2 7545965 7545964 + ORSiTERTOOT00226 792 0.0003 (1/2959) 0 * * Os_TE_512667 Chr2 7540392 7540113 - F524 291 0.8345 (968/1160) 1 Intact * Os_TE_512654 Chr2 7538435 7538434 - DS-RICE2N 613 0.0003 (1/2940) 0 * * Os_TE_512648 Chr2 7535595 7535596 - RIREX_LTR 8828 0.0581 (174/2993) 0 * Os_TE_512647 Os_TE_512647 Chr2 7535591 7535590 + RIREX_LTR 8828 0.0585 (175/2993) 0 * Os_TE_512648 Os_TE_512615 Chr2 7521982 7521981 - MPING 430 0.0003 (1/2931) 0 * * Os_TE_512565 Chr2 7500002 7500001 - OSTE15 1168 0.0579 (172/2970) 0 * * Os_TE_512560 Chr2 7493825 7493826 - SC-3_LTR 5748 0.0010 (3/2987) 0 * Os_TE_512559 Os_TE_512559 Chr2 7493823 7493822 + ORSiTERTOOT00296 5553 0.0010 (3/2988) 0 * Os_TE_512560 Os_TE_512549 Chr2 7488145 7488146 + SINE03_OS 360 0.0003 (1/2916) 0 * * Os_TE_512543 Chr2 7485752 7485751 - ORSgTEMT01601432 239 0.0047 (14/2995) 0 * Os_TE_512542 Os_TE_512542 Chr2 7485749 7485750 + ORSgTEMT01602181 239 0.0050 (15/2995) 0 * Os_TE_512543 Os_TE_512537 Chr2 7484407 7484406 + AMYLTP 383 0.0222 (66/2978) 0 * * Os_TE_512510 Chr2 7473599 7473600 + COPIA2-LTR_OS 6433 0.0067 (20/2985) 0 * Os_TE_512509 Os_TE_512509 Chr2 7473595 7473594 - COPIA2-LTR_OS 6433 0.0064 (19/2987) 0 * Os_TE_512510 Os_TE_512507 Chr2 7472850 7472851 + ORSiTERTOOT00074 4935 0.0007 (2/2988) 0 * * Os_TE_512498 Chr2 7467250 7467251 - COPIA2-LTR_OS 6433 0.0020 (6/2994) 0 * Os_TE_512497 Os_TE_512497 Chr2 7467246 7467245 + COPIA2-LTR_OS 6433 0.0020 (6/2999) 0 * Os_TE_512498 Os_TE_512496 Chr2 7467094 7467095 - MPING 430 0.0003 (1/2995) 0 * Os_TE_512495 Os_TE_512495 Chr2 7467092 7467091 + MPING 430 0.0003 (1/2994) 0 * Os_TE_512496 Os_TE_512494 Chr2 7463857 7463858 - ORSgTEMT00901630 250 0.1064 (108/1015) 0 * * Os_TE_512478 Chr2 7461334 7461335 - INDITTO 263 0.0008 (2/2619) 0 * Os_TE_512477 Os_TE_512477 Chr2 7461332 7461331 + INDITTO 263 0.0008 (2/2630) 0 * Os_TE_512478 Os_TE_512467 Chr2 7460692 7460693 + OSTE18 129 0.6662 (1788/2684) 0 * * Os_TE_512416 Chr2 7444035 7444036 - COPIA2-LTR_OS 6433 0.0004 (1/2805) 0 * Os_TE_512415 Os_TE_512415 Chr2 7444031 7444030 + COPIA2-LTR_OS 6433 0.0004 (1/2794) 0 * Os_TE_512416 Os_TE_512409 Chr2 7440574 7440573 + TRUNCATOR 2918 0.0067 (19/2824) 0 * * Os_TE_512378 Chr2 7425171 7425170 - OSTE1 801 0.0004 (1/2763) 0 * * Os_TE_512354 Chr2 7416885 7416884 + NDNA1TNA_OS 334 0.0040 (11/2767) 0 * * Os_TE_512343 Chr2 7414744 7414743 + TRUNCATOR 2918 0.0037 (11/2987) 0 * Os_TE_512342 Os_TE_512342 Chr2 7414737 7414738 - TRUNCATOR 2918 0.0037 (11/2996) 0 * Os_TE_512343 Os_TE_512325 Chr2 7400589 7400590 + OLO24 345 0.0003 (1/2985) 0 * Os_TE_512324 Os_TE_512324 Chr2 7400587 7400586 - OLO24 345 0.0003 (1/2982) 0 * Os_TE_512325 Os_TE_512323 Chr2 7400518 7400519 - NDNA1TNA_OS 334 0.0003 (1/2958) 0 * * Os_TE_512311 Chr2 7395686 7395687 + TRUNCATOR 2918 0.0036 (9/2510) 0 * * Os_TE_512279 Chr2 7384029 7384030 + SPMLIKE 10989 0.0044 (13/2981) 0 * Os_TE_512278 Os_TE_512278 Chr2 7384027 7384026 - ORSgTETN00200001 10994 0.0044 (13/2972) 0 * Os_TE_512279 Os_TE_512268 Chr2 7381313 7381314 - EnSpm-13_OS 11171 0.0037 (11/2977) 0 * Os_TE_512267 Os_TE_512267 Chr2 7381311 7381310 + EnSpm-13_OS 11171 0.0034 (10/2920) 0 * Os_TE_512268 Os_TE_512266 Chr2 7381209 7381210 + OLO24 345 0.0005 (1/2148) 0 * Os_TE_512265 Os_TE_512265 Chr2 7381207 7381206 - OLO24 345 0.0003 (1/2976) 0 * Os_TE_512266 Os_TE_512263 Chr2 7381191 7381192 - ORSgTETN00200001 10994 0.5582 (1654/2963) 0 * * Os_TE_512233 Chr2 7375797 7375450 - NDNA2TNA_OS 346 0.4291 (1265/2948) 1 Intact Os_TE_512229 Os_TE_512229 Chr2 7375450 7375797 + NDNA2TNA_OS 346 0.4366 (1295/2966) 1 Intact Os_TE_512233 Os_TE_512228 Chr2 7375054 7375055 - INDITTO 263 0.0667 (198/2967) 0 * Os_TE_512227 Os_TE_512227 Chr2 7375052 7375051 + INDITTO 263 0.0683 (203/2973) 0 * Os_TE_512228 Os_TE_512209 Chr2 7371002 7371003 + RIREX_LTR 8828 0.0003 (1/2971) 0 * * Os_TE_512196 Chr2 7368579 7368578 + ORSgTEMT01601591 242 0.0007 (2/2810) 0 * * Os_TE_512182 Chr2 7364990 7364989 + COPIA2-LTR_OS 6433 0.0003 (1/2959) 0 * * Os_TE_512154 Chr2 7359205 7359206 + RIREX_LTR 8828 0.0003 (1/2954) 0 * * Os_TE_512142 Chr2 7356435 7356434 + ORSgTERTOOT00009 12852 0.0492 (145/2949) 0 * * Os_TE_512137 Chr2 7355208 7354963 + STOWAWAY51_OS 246 0.3250 (887/2729) 1 Intact Os_TE_512135 Os_TE_512135 Chr2 7354971 7355205 + ORSgTEMT01600726 235 0.2564 (693/2703) 1 Intact Os_TE_512137 Os_TE_512115 Chr2 7349185 7349186 + SPMLIKE 10989 0.0003 (1/2983) 0 * Os_TE_512114 Os_TE_512114 Chr2 7349183 7349182 - ORSgTETN00200001 10994 0.0003 (1/2974) 0 * Os_TE_512115 Os_TE_512093 Chr2 7336150 7336151 - ORSgTERT00201216 11284 0.0014 (4/2961) 0 * Os_TE_512092 Os_TE_512092 Chr2 7336146 7336145 - RIRE2_LTR 11306 0.0010 (3/2937) 0 * Os_TE_512093 Os_TE_512051 Chr2 7327113 7327114 - ORSgTEMT01601208 238 0.0003 (1/2959) 0 * * Os_TE_512043 Chr2 7324229 7324230 - SC-3_LTR 5748 0.0010 (3/2995) 0 * Os_TE_512042 Os_TE_512042 Chr2 7324225 7324224 + ORSiTERTOOT00296 5553 0.0010 (3/2997) 0 * Os_TE_512043 Os_TE_512026 Chr2 7311413 7311414 + MuDR-N6_OS 836 0.0003 (1/2924) 0 * * Os_TE_512018 Chr2 7308224 7308225 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_512017 Os_TE_512017 Chr2 7308220 7308219 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_512018 Os_TE_512015 Chr2 7307259 7307029 + ORSgTETNOOT01219 231 0.2458 (736/2994) 1 Intact Os_TE_512013 Os_TE_512013 Chr2 7307025 7307265 + ORSgTETNOOT00908 242 0.2457 (736/2996) 1 Intact Os_TE_512015 Os_TE_512011 Chr2 7305731 7305730 - NDNA1TNA_OS 334 0.0117 (35/2979) 0 * Os_TE_512010 Os_TE_512010 Chr2 7305702 7305703 + NDNA1TNA_OS 334 0.0121 (36/2973) 0 * Os_TE_512011 Os_TE_512009 Chr2 7305176 7305177 + STOWAWAY11_OS 292 0.0017 (5/2983) 0 * * Os_TE_511998 Chr2 7302373 7302372 - ORSgTEMT01702045 137 0.0007 (2/2994) 0 * Os_TE_511997 Os_TE_511997 Chr2 7302364 7302365 - ORSgTEMT01700765 131 0.0007 (2/2993) 0 * Os_TE_511998 Os_TE_511990 Chr2 7298197 7298198 + ORSgTEMT04800085 366 0.0010 (3/2956) 0 * Os_TE_511989 Os_TE_511989 Chr2 7298196 7298195 - ORSgTEMT04800063 360 0.0010 (3/2958) 0 * Os_TE_511990 Os_TE_511986 Chr2 7296579 7296580 - ORSgTEMT00101623 324 0.0010 (3/2940) 0 * * Os_TE_511964 Chr2 7285267 7285268 - ORSiTERTOOT00301 9654 0.0014 (1/709) 0 * * Os_TE_511958 Chr2 7279398 7279399 - AMYLTP 383 0.0231 (69/2989) 0 * Os_TE_511957 Os_TE_511957 Chr2 7279390 7279389 + AMYLTP 383 0.0231 (69/2991) 0 * Os_TE_511958 Os_TE_511945 Chr2 7268921 7268922 + OLO24 345 0.0003 (1/2971) 0 * Os_TE_511944 Os_TE_511944 Chr2 7268919 7268918 - OLO24 345 0.0003 (1/2982) 0 * Os_TE_511945 Os_TE_511943 Chr2 7268028 7268029 - ORSgTEMT01800105 452 0.0007 (2/2881) 0 * * Os_TE_511939 Chr2 7267151 7266918 - ORSgTEMT01601564 233 0.6195 (1765/2849) 1 Intact * Os_TE_511924 Chr2 7261702 7261703 + OLO24 345 0.0004 (1/2810) 0 * * Os_TE_511876 Chr2 7250640 7250639 - ORSgTEMT00900965 216 0.0007 (2/2982) 0 * Os_TE_511875 Os_TE_511875 Chr2 7250639 7250640 - ORSgTEMT00900417 246 0.0007 (2/2971) 0 * Os_TE_511876 Os_TE_511873 Chr2 7249807 7249808 + STOWAWAY50_OS 174 0.0010 (3/2974) 0 * * Os_TE_511862 Chr2 7247678 7247679 + OSR3_LTR 5201 0.0010 (3/2993) 0 * Os_TE_511861 Os_TE_511861 Chr2 7247674 7247673 - OSR3_LTR 5201 0.0010 (3/2992) 0 * Os_TE_511862 Os_TE_511837 Chr2 7234014 7234015 - CACTA-Q 2268 0.0007 (2/2725) 0 * * Os_TE_511836 Chr2 7233534 7233533 + ORSgTEMT00700017 386 0.0004 (1/2330) 0 * * Os_TE_511824 Chr2 7229834 7229835 + COPIA2-LTR_OS 6433 0.0005 (1/1915) 0 * * Os_TE_511801 Chr2 7226147 7226148 + ORSgTEMT00600192 355 0.0013 (3/2375) 0 * * Os_TE_511748 Chr2 7205083 7205082 - TRUNCATOR 2918 0.1585 (471/2972) 0 * * Os_TE_511743 Chr2 7203880 7204900 + OSTE14 885 0.5823 (1741/2990) 1 Intact * Os_TE_511742 Chr2 7203872 7203873 - RIRE3_LTR 12054 0.4378 (1308/2988) 0 * * Os_TE_511740 Chr2 7203688 7203689 - RETROSAT4_LTR 13504 0.5293 (1580/2985) 0 * Os_TE_511739 Os_TE_511739 Chr2 7203684 7203683 + RETROSAT4_LTR 13504 0.5134 (1495/2912) 0 * Os_TE_511740 Os_TE_511734 Chr2 7203004 7203005 - MDR2 6967 0.1608 (481/2991) 0 * Os_TE_511733 Os_TE_511733 Chr2 7202996 7202995 + MDR2 6967 0.1599 (478/2989) 0 * Os_TE_511734 Os_TE_511693 Chr2 7186338 7186339 - TRUNCATOR2_LTR 2904 0.0054 (16/2965) 0 * Os_TE_511692 Os_TE_511692 Chr2 7186334 7186333 + ORSiCMCM00100019 2717 0.0047 (14/2950) 0 * Os_TE_511693 Os_TE_511684 Chr2 7183575 7183574 - INDITTO 263 0.5341 (1354/2535) 0 * * Os_TE_511683 Chr2 7182768 7182767 - ORSgTEMT00900099 250 0.1382 (401/2902) 0 * * Os_TE_511682 Chr2 7182767 7182768 - ORSgTETNOOT00534 256 0.0013 (4/2972) 0 * * Os_TE_511680 Chr2 7182645 7182644 - INDITTO 263 0.0010 (3/2976) 0 * * Os_TE_511661 Chr2 7176809 7176478 - ORSgTEMT00100252 339 0.7598 (2164/2848) 1 Intact Os_TE_511657 Os_TE_511657 Chr2 7176472 7176788 + ORSgTEMT00100828 349 0.8348 (1152/1380) 1 Intact Os_TE_511661 Os_TE_511641 Chr2 7172849 7172850 + COPI2_LTR 4733 0.0003 (1/2983) 0 * Os_TE_511640 Os_TE_511640 Chr2 7172845 7172844 - COPI2_LTR 4733 0.0004 (1/2542) 0 * Os_TE_511641 Os_TE_511638 Chr2 7171687 7171686 - ORSgTEMT00900741 219 0.1657 (465/2807) -1 * Os_TE_511637 Os_TE_511637 Chr2 7171683 7171684 + ORSgTEMT00901844 250 0.1715 (481/2805) 0 * Os_TE_511638 Os_TE_511625 Chr2 7167192 7167191 - CACTA-H 1152 0.8357 (2096/2508) 0 * * Os_TE_511569 Chr2 7128640 7128641 - SC-3_LTR 5748 0.0014 (4/2959) 0 * Os_TE_511568 Os_TE_511568 Chr2 7128636 7128635 + ORSiTERTOOT00296 5553 0.0014 (4/2961) 0 * Os_TE_511569 Os_TE_511567 Chr2 7125185 7125186 + SZ-4_LTR 5991 0.0003 (1/2978) 0 * Os_TE_511566 Os_TE_511566 Chr2 7125181 7125180 - SZ-4_LTR 5991 0.0003 (1/2984) 0 * Os_TE_511567 Os_TE_511540 Chr2 7112709 7112710 + COPIA2-LTR_OS 6433 0.0003 (1/2984) 0 * Os_TE_511539 Os_TE_511539 Chr2 7112705 7112704 - COPIA2-LTR_OS 6433 0.0003 (1/2984) 0 * Os_TE_511540 Os_TE_511525 Chr2 7108588 7108351 - ORSgTEMT01601208 238 0.6331 (1734/2739) 1 Intact Os_TE_511524 Os_TE_511524 Chr2 7108351 7108588 - ORSgTEMT01600639 228 0.6488 (1862/2870) 1 Intact Os_TE_511525 Os_TE_511515 Chr2 7107724 7107725 - ORSgTETNOOT01053 196 0.0014 (4/2904) 0 * * Os_TE_511500 Chr2 7102041 7102040 + ORSgTEMT01602181 239 0.0857 (254/2964) 0 * * Os_TE_511491 Chr2 7096496 7096495 - STOWAWAY51_OS 246 0.0003 (1/2980) 0 * Os_TE_511490 Os_TE_511490 Chr2 7096490 7096491 + STOWAWAY51_OS 246 0.0003 (1/2981) 0 * Os_TE_511491 Os_TE_511480 Chr2 7094398 7094399 + ORSgTEMT01601591 242 0.0007 (2/2982) 0 * * Os_TE_511433 Chr2 7078428 7078429 - INDITTO 263 0.0054 (16/2954) 0 * Os_TE_511432 Os_TE_511432 Chr2 7078426 7078425 - ORSgTETNOOT02417 265 0.0054 (16/2943) 0 * Os_TE_511433 Os_TE_511431 Chr2 7078283 7078284 - INDITTO 263 0.0003 (1/2959) 0 * * Os_TE_511429 Chr2 7078245 7078246 - MPING 430 0.0027 (8/2953) 0 * Os_TE_511428 Os_TE_511428 Chr2 7078243 7078242 + MPING 430 0.0030 (9/2955) 0 * Os_TE_511429 Os_TE_511426 Chr2 7078210 7078209 - MPING 430 0.0003 (1/2890) 0 * * Os_TE_511399 Chr2 7071603 7071602 + CASTAWAY-3 314 0.0017 (5/2936) 0 * * Os_TE_511388 Chr2 7065230 7065229 - COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * * Os_TE_511377 Chr2 7062816 7062817 - TRSA_OS 353 0.0005 (1/2011) 0 * * Os_TE_511375 Chr2 7062621 7062620 + F569 228 0.0004 (1/2659) 0 * * Os_TE_511360 Chr2 7061114 7061115 + TRUNCATOR2_LTR 2904 0.0004 (1/2661) 0 * * Os_TE_511338 Chr2 7048659 7048886 + ORSgTEMT01601143 237 0.6804 (1999/2938) 1 Intact * Os_TE_511279 Chr2 7030533 7030534 - COPIA2-LTR_OS 6433 0.0007 (2/2983) 0 * Os_TE_511278 Os_TE_511278 Chr2 7030529 7030528 + COPIA2-LTR_OS 6433 0.0007 (2/2982) 0 * Os_TE_511279 Os_TE_511274 Chr2 7029409 7029410 + ORSgTERT00200961 124 0.0003 (1/2896) 0 * * Os_TE_511272 Chr2 7029293 7029294 + STOWAWAY51_OS 246 0.0004 (1/2833) 0 * * Os_TE_511271 Chr2 7029279 7029280 + MPING 430 0.0011 (3/2837) 0 * Os_TE_511270 Os_TE_511270 Chr2 7029277 7029276 - MPING 430 0.0011 (3/2841) 0 * Os_TE_511271 Os_TE_511267 Chr2 7028327 7028328 - RIRE2_LTR 11306 0.0013 (4/2988) 0 * Os_TE_511266 Os_TE_511266 Chr2 7028323 7028322 + RIRE2_LTR 11306 0.0013 (4/2987) 0 * Os_TE_511267 Os_TE_511261 Chr2 7026570 7026569 + ORSgTEMT01601934 207 0.8386 (2390/2850) 0 * * Os_TE_511259 Chr2 7026263 7026264 + COPIA2-LTR_OS 6433 0.0003 (1/2943) 0 * Os_TE_511258 Os_TE_511258 Chr2 7026259 7026258 - COPIA2-LTR_OS 6433 0.0003 (1/2950) 0 * Os_TE_511259 Os_TE_511207 Chr2 7001317 7000167 - SETARIA1 1293 0.1530 (447/2922) 1 Intact Os_TE_511205 Os_TE_511205 Chr2 7000165 7001311 + SETARIA2 1142 0.1583 (465/2938) 1 Intact Os_TE_511207 Os_TE_511201 Chr2 6997761 6997762 - RETRO1_LTR 8314 0.5631 (1665/2957) 0 * * Os_TE_511196 Chr2 6995799 6994292 + MERMITE18C 1473 0.7187 (2108/2933) 1 Intact Os_TE_511195 Os_TE_511195 Chr2 6994292 6995796 + MERMITE18C 1473 0.7086 (2055/2900) 1 Intact Os_TE_511196 Os_TE_511194 Chr2 6994224 6994223 + STOWAWAY44_OS 240 0.0003 (1/2952) 0 * Os_TE_511193 Os_TE_511193 Chr2 6994221 6994222 - STOWAWAY44_OS 240 0.0003 (1/2966) 0 * Os_TE_511194 Os_TE_511192 Chr2 6994130 6994131 + ORSgTEMT01601591 242 0.0003 (1/2984) 0 * * Os_TE_511185 Chr2 6980579 6980580 + ORSiTERTOOT00296 5553 0.0003 (1/2994) 0 * Os_TE_511184 Os_TE_511184 Chr2 6980575 6980574 - SC-3_LTR 5748 0.0003 (1/2996) 0 * Os_TE_511185 Os_TE_511182 Chr2 6978472 6978471 + OSTE15 1168 0.0078 (21/2688) 0 * * Os_TE_511164 Chr2 6972655 6972656 + ATLANTYS-LTR_OS 13740 0.2944 (868/2948) 0 * Os_TE_511163 Os_TE_511163 Chr2 6972651 6972650 - SZ-19LTR 1513 0.2937 (872/2969) 0 * Os_TE_511164 Os_TE_511153 Chr2 6972027 6972028 - ORSiTETNOOT00134 607 0.2888 (523/1811) 0 * Os_TE_511152 Os_TE_511152 Chr2 6972020 6972019 + TWIF 586 0.5440 (1528/2809) 0 * Os_TE_511153 Os_TE_511141 Chr2 6963369 6963128 + ORSgTEMT01602181 239 0.7214 (2131/2954) 1 Intact Os_TE_511140 Os_TE_511140 Chr2 6963128 6963369 - ORSgTEMT01601493 303 0.3678 (508/1381) 1 Intact Os_TE_511141 Os_TE_511138 Chr2 6961756 6961755 + ORSgTEMT01601591 242 0.0070 (21/2987) 0 * Os_TE_511137 Os_TE_511137 Chr2 6961753 6961754 + ORSgTEMT01601591 242 0.0060 (18/2986) 0 * Os_TE_511138 Os_TE_511135 Chr2 6961012 6961013 + STOWAWAY51_OS 246 0.2828 (836/2956) 0 * * Os_TE_511134 Chr2 6959833 6959832 + ORSgTETNOOT00908 242 0.0097 (21/2162) 0 * * Os_TE_511122 Chr2 6955598 6955599 - ORSgTEMT01600639 228 0.0004 (1/2575) 0 * * Os_TE_511120 Chr2 6955569 6955345 + ORSgTEMT01600726 235 0.7138 (2050/2872) 1 Intact Os_TE_511119 Os_TE_511119 Chr2 6955335 6955577 + ORSgTEMT01601591 242 0.7213 (2083/2888) 1 Intact Os_TE_511120 Os_TE_511112 Chr2 6952802 6952803 - COPI2_LTR 4733 0.0005 (1/1959) 0 * Os_TE_511111 Os_TE_511111 Chr2 6952801 6952800 + COPI2_LTR 4733 0.0005 (1/1984) -1 * Os_TE_511112 Os_TE_511100 Chr2 6950230 6949996 - ORSgTEMT01602592 236 0.7238 (2123/2933) 1 Intact * Os_TE_511093 Chr2 6947489 6947488 - STOWAWAY51_OS 246 0.2921 (876/2999) 0 * * Os_TE_511082 Chr2 6944505 6944504 + ORSiTERTOOT00226 792 0.0003 (1/2992) 0 * * Os_TE_511069 Chr2 6941109 6941438 - OLO24 345 0.7325 (2169/2961) 1 Intact * Os_TE_511063 Chr2 6940135 6940136 - COPI2_LTR 4733 0.0080 (17/2119) 0 * Os_TE_511062 Os_TE_511062 Chr2 6940131 6940130 + COPI2_LTR 4733 0.0062 (18/2885) 0 * Os_TE_511063 Os_TE_511061 Chr2 6938982 6938983 - COPI2_LTR 4733 0.0044 (13/2933) 0 * Os_TE_511060 Os_TE_511060 Chr2 6938978 6938977 + COPI2_LTR 4733 0.0051 (15/2953) 0 * Os_TE_511061 Os_TE_511059 Chr2 6938551 6937722 + MUDROS2 6821 0.7359 (2157/2931) 1 Intact * Os_TE_511053 Chr2 6935214 6935215 + ORSgTEMT01601122 212 0.2011 (443/2203) 0 * * Os_TE_511052 Chr2 6935170 6935169 - STOWAWAY44_OS 240 0.6318 (1599/2531) 0 * * Os_TE_511045 Chr2 6933171 6933172 + DS-RICE3N 525 0.5440 (1546/2842) 0 * * Os_TE_511043 Chr2 6933094 6933095 - COPIA2-LTR_OS 6433 0.0003 (1/2943) 0 * * Os_TE_511036 Chr2 6931200 6931201 + ORSgTETNOOT01930 140 0.5679 (1682/2962) 0 * Os_TE_511035 Os_TE_511035 Chr2 6931198 6931197 - ORSgTEMT00501447 126 0.5682 (1696/2985) 0 * Os_TE_511036 Os_TE_511033 Chr2 6931120 6931121 - STOWAWAY13_OS 251 0.8398 (2469/2940) 0 * * Os_TE_511029 Chr2 6929868 6926453 + TRUNCATOR2_LTR 2904 0.1530 (449/2935) 1 Intact Os_TE_511023 Os_TE_511023 Chr2 6926453 6929868 - TRUNCATOR2_LTR 2904 0.3664 (499/1362) 1 Intact Os_TE_511029 Os_TE_511017 Chr2 6925223 6925224 - ORSgTEMT02400179 221 0.3112 (413/1327) 0 * Os_TE_511016 Os_TE_511016 Chr2 6925222 6925221 - TYPEM 227 0.3145 (422/1342) 0 * Os_TE_511017 Os_TE_511003 Chr2 6921521 6921520 + TYPEU4 402 0.4007 (1193/2977) 0 * Os_TE_511002 Os_TE_511002 Chr2 6921520 6921521 - TYPEU1 380 0.3873 (1125/2905) 0 * Os_TE_511003 Os_TE_511001 Chr2 6920544 6920545 + OLO24 345 0.2856 (842/2948) 0 * * Os_TE_510996 Chr2 6918528 6918527 - ORSgTEMT01400022 212 0.2842 (846/2977) 0 * Os_TE_510995 Os_TE_510995 Chr2 6918520 6918521 - ORSgTEMT00900741 219 0.2829 (844/2983) 0 * Os_TE_510996 Os_TE_510993 Chr2 6917009 6917010 + ORSiTERTOOT00226 792 0.0003 (1/2937) 0 * Os_TE_510992 Os_TE_510992 Chr2 6917005 6917004 - SZ-22_LTR 4403 0.0003 (1/2948) 0 * Os_TE_510993 Os_TE_510983 Chr2 6911252 6911253 + ORSgTEMT01701879 145 0.2681 (785/2928) 0 * * Os_TE_510978 Chr2 6906055 6905817 + ORSgTEMT01602181 239 0.4668 (492/1054) 1 Intact Os_TE_510977 Os_TE_510977 Chr2 6905817 6906055 - ORSgTEMT01601493 303 0.4653 (483/1038) 1 Intact Os_TE_510978 Os_TE_510975 Chr2 6904767 6901903 + MDR2 6967 0.3467 (994/2867) 1 Intact * Os_TE_510969 Chr2 6901525 6901526 + ORSgTETNOOT00543 259 0.2390 (526/2201) 0 * Os_TE_510968 Os_TE_510968 Chr2 6901524 6901523 - ORSgTETNOOT00568 259 0.1790 (524/2928) 0 * Os_TE_510969 Os_TE_510964 Chr2 6899390 6876002 - RETRO2_LTR 12874 0.1680 (498/2964) 1 Intact Os_TE_510947 Os_TE_510947 Chr2 6876002 6899390 + RETRO2_LTR 12874 0.1712 (492/2873) 1 Intact Os_TE_510964 Os_TE_510946 Chr2 6875712 6875713 + SEVERIN-2 1952 0.0003 (1/2936) 0 * Os_TE_510945 Os_TE_510945 Chr2 6875709 6875708 - SEVERIN-2 1952 0.0003 (1/2893) 0 * Os_TE_510946 Os_TE_510944 Chr2 6875619 6875382 + ORSgTEMT01602029 239 0.7428 (2149/2893) 1 Intact Os_TE_510943 Os_TE_510943 Chr2 6875382 6875616 + ORSgTEMT01601934 207 0.7317 (2165/2959) 1 Intact Os_TE_510944 Os_TE_510941 Chr2 6875154 6875153 + CACTA-H 1152 0.2723 (789/2898) 0 * * Os_TE_510937 Chr2 6874070 6874071 - ORSiTEMT01000008 242 0.4543 (831/1829) 0 * * Os_TE_510933 Chr2 6873641 6873785 - ORSgTEMT00500974 146 0.7295 (2130/2920) 1 Intact * Os_TE_510927 Chr2 6872765 6872764 + NDNA1TNA_OS 334 0.0003 (1/2883) 0 * * Os_TE_510925 Chr2 6872250 6872251 - COPIA2-LTR_OS 6433 0.0003 (1/2954) 0 * Os_TE_510924 Os_TE_510924 Chr2 6872246 6872245 + COPIA2-LTR_OS 6433 0.0003 (1/2949) 0 * Os_TE_510925 Os_TE_510916 Chr2 6870731 6870732 + ORSgTETNOOT00908 242 0.0017 (5/2928) 0 * * Os_TE_510897 Chr2 6858768 6858767 - INDITTO 263 0.0297 (86/2899) 0 * * Os_TE_510896 Chr2 6858042 6858041 + ORSgTEMT01602051 240 0.2784 (829/2978) 0 * Os_TE_510895 Os_TE_510895 Chr2 6858039 6858040 + ORSgTEMT01600402 237 0.2746 (814/2964) 0 * Os_TE_510896 Os_TE_510890 Chr2 6854112 6854113 - COPI2_LTR 4733 0.0003 (1/2983) 0 * * Os_TE_510888 Chr2 6853764 6853765 - RIREX_LTR 8828 0.0003 (1/2971) 0 * Os_TE_510887 Os_TE_510887 Chr2 6853760 6853759 + RIREX_LTR 8828 0.0003 (1/2969) 0 * Os_TE_510888 Os_TE_510886 Chr2 6853706 6853707 - COPIA2-LTR_OS 6433 0.0003 (1/2977) 0 * Os_TE_510885 Os_TE_510885 Chr2 6853702 6853701 + COPIA2-LTR_OS 6433 0.0003 (1/2982) 0 * Os_TE_510886 Os_TE_510866 Chr2 6845835 6845836 - ORSgTEMT00901723 248 0.5648 (1686/2985) 0 * Os_TE_510865 Os_TE_510865 Chr2 6845829 6845828 - ORSgTEMT00901870 238 0.5676 (1697/2990) 0 * Os_TE_510866 Os_TE_510857 Chr2 6841090 6844646 + ORSiTERT00200145 12238 0.4283 (1222/2853) 1 Intact * Os_TE_510845 Chr2 6830954 6830955 - COPI2_LTR 4733 0.0003 (1/2981) 0 * * Os_TE_510842 Chr2 6830019 6829753 + STOWAWAY11_OS 292 0.7367 (2177/2955) 1 Intact * Os_TE_510826 Chr2 6824687 6824445 + ORSgTEMT01601591 242 0.1807 (463/2562) 1 Intact Os_TE_510825 Os_TE_510825 Chr2 6824442 6824687 + STOWAWAY51_OS 246 0.2160 (469/2171) 1 Intact Os_TE_510826 Os_TE_510824 Chr2 6824403 6824173 + ORSgTETNOOT01219 231 0.2029 (459/2262) 1 Intact Os_TE_510823 Os_TE_510823 Chr2 6824169 6824403 + ORSgTETNOOT00908 242 0.1918 (497/2591) 1 Intact Os_TE_510824 Os_TE_510818 Chr2 6821642 6821643 - ORSiTERT00100062 5674 0.3006 (772/2568) 0 * Os_TE_510817 Os_TE_510817 Chr2 6821638 6821637 + OSTONOR1_LTR 6440 0.2910 (764/2625) 0 * Os_TE_510818 Os_TE_510810 Chr2 6819435 6819434 - STOWAWAY51_OS 246 0.0004 (1/2520) 0 * * Os_TE_510801 Chr2 6815205 6815206 - SC-3_LTR 5748 0.0013 (4/2996) 0 * Os_TE_510800 Os_TE_510800 Chr2 6815201 6815200 + ORSiTERTOOT00296 5553 0.0013 (4/2991) 0 * Os_TE_510801 Os_TE_510796 Chr2 6814391 6814625 - ORSgTEMT01601208 238 0.7275 (2154/2961) 1 Intact * Os_TE_510795 Chr2 6814000 6814001 - SC-3_LTR 5748 0.0003 (1/2989) 0 * Os_TE_510794 Os_TE_510794 Chr2 6813996 6813995 + ORSiTERTOOT00296 5553 0.0003 (1/2991) 0 * Os_TE_510795 Os_TE_510791 Chr2 6810914 6810915 - ORSiTETNOOT00156 3648 0.0140 (28/2005) 0 * * Os_TE_510786 Chr2 6806678 6806677 + STOWAWAY11_OS 292 0.2834 (846/2985) 0 * * Os_TE_510779 Chr2 6801725 6801726 - ORSgTERTOOT00067 6483 0.0003 (1/2985) 0 * * Os_TE_510777 Chr2 6798119 6798118 + MDR2 6967 0.0008 (1/1318) 0 * * Os_TE_510771 Chr2 6796227 6796068 + STOWAWAY47_OS 148 0.4055 (1140/2811) 1 Intact Os_TE_510769 Os_TE_510769 Chr2 6796068 6796227 + STOWAWAY47_OS 148 0.4280 (1252/2925) 1 Intact Os_TE_510771 Os_TE_510760 Chr2 6795094 6795095 - OSTONOR1_LTR 6440 0.2619 (779/2974) 0 * * Os_TE_510746 Chr2 6783920 6783919 - ECR 394 0.0013 (4/2977) 0 * * Os_TE_510734 Chr2 6776359 6776360 - MUDROS1 4932 0.5737 (1712/2984) 0 * Os_TE_510733 Os_TE_510733 Chr2 6776351 6776350 + CLOUD-3 550 0.5743 (1712/2981) 0 * Os_TE_510734 Os_TE_510729 Chr2 6773684 6773685 + NDNA1TNA_OS 334 0.5566 (1628/2925) 0 * * Os_TE_510724 Chr2 6770994 6770993 - NDNA2TNA_OS 346 0.4020 (1177/2928) 0 * Os_TE_510723 Os_TE_510723 Chr2 6770980 6770981 + NDNA2TNA_OS 346 0.0005 (1/1847) 0 * Os_TE_510724 Os_TE_510719 Chr2 6770184 6769957 - ORSgTEMT00900741 219 0.4441 (1320/2972) 1 Intact * Os_TE_510711 Chr2 6769926 6770184 - ORSgTEMT00901723 248 0.6244 (1817/2910) 1 Intact * Os_TE_510707 Chr2 6764900 6764901 + ORSgTEMT01600300 235 0.5047 (1343/2661) 0 * * Os_TE_510700 Chr2 6760592 6760593 - RETROSAT2LTR 12796 0.0239 (63/2640) 0 * * Os_TE_510697 Chr2 6760154 6760155 + RETROSAT2LTR 12796 0.0071 (21/2970) 0 * * Os_TE_510684 Chr2 6758206 6758205 + F524 291 0.5819 (1712/2942) 0 * * Os_TE_510658 Chr2 6744192 6744191 + COPI2_LTR 4733 0.0003 (1/2973) 0 * * Os_TE_510644 Chr2 6738878 6738879 - RIREX_LTR 8828 0.0020 (6/2927) 0 * * Os_TE_510604 Chr2 6711780 6711781 + ORSiTERTOOT00296 5553 0.0007 (2/2992) 0 * Os_TE_510603 Os_TE_510603 Chr2 6711776 6711775 - SC-3_LTR 5748 0.0007 (2/2990) 0 * Os_TE_510604 Os_TE_510543 Chr2 6677359 6677360 - COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * * Os_TE_510527 Chr2 6665826 6665827 - SC-8_LTR 4951 0.0013 (4/2987) 0 * Os_TE_510526 Os_TE_510526 Chr2 6665822 6665821 + ORSiTERTOOT00381 4988 0.0013 (4/2983) 0 * Os_TE_510527 Os_TE_510505 Chr2 6662355 6662356 + MPING 430 0.0004 (1/2843) 0 * * Os_TE_510463 Chr2 6650000 6650001 - ORSgTERT00200919 424 0.0003 (1/2971) 0 * * Os_TE_510462 Chr2 6648332 6648333 + MERMITEA 1710 0.0017 (5/2961) 0 * * Os_TE_510452 Chr2 6640881 6640766 - ORSgTEMT01701858 154 0.3197 (946/2959) 1 Intact Os_TE_510451 Os_TE_510451 Chr2 6640766 6640881 - ORSgTEMT01702045 137 0.3212 (957/2979) 1 Intact Os_TE_510452 Os_TE_510429 Chr2 6632319 6632320 + MPING 430 0.0003 (1/2946) 0 * * Os_TE_510416 Chr2 6626853 6626854 + ORSgTEMT01601591 242 0.0003 (1/2986) 0 * * Os_TE_510415 Chr2 6626540 6626541 + ORSgTEMT01601809 239 0.0003 (1/2963) 0 * * Os_TE_510399 Chr2 6623176 6623175 - CACTA-H 1152 0.0017 (5/2959) 0 * * Os_TE_510370 Chr2 6610593 6610592 - ORSgTEMT01500002 239 0.0007 (2/2962) 0 * * Os_TE_510339 Chr2 6603662 6603663 - SC-3_LTR 5748 0.0007 (2/2983) 0 * Os_TE_510338 Os_TE_510338 Chr2 6603658 6603657 + ORSiTERTOOT00296 5553 0.0007 (2/2976) 0 * Os_TE_510339 Os_TE_510335 Chr2 6602460 6602461 - SC-3_LTR 5748 0.0051 (15/2956) 0 * Os_TE_510334 Os_TE_510334 Chr2 6602456 6602455 + ORSiTERTOOT00296 5553 0.0047 (14/2963) 0 * Os_TE_510335 Os_TE_510312 Chr2 6595423 6595424 + BAJIELTR 4500 0.0247 (74/2997) 0 * Os_TE_510311 Os_TE_510311 Chr2 6595419 6595418 - BAJIELTR 4500 0.0240 (72/2994) 0 * Os_TE_510312 Os_TE_510292 Chr2 6585145 6585144 - STOWAWAY46_OS 154 0.0236 (70/2963) 0 * * Os_TE_510284 Chr2 6579823 6579822 + STOWAWAY44_OS 240 0.0202 (60/2969) 0 * * Os_TE_510280 Chr2 6579167 6579166 - ORSgTETNOOT00118 134 0.0241 (72/2991) 0 * * Os_TE_510279 Chr2 6578977 6578976 - NDNA1TNA_OS 334 0.0241 (72/2983) 0 * * Os_TE_510203 Chr2 6558864 6558863 - AMYLTP 383 0.0286 (84/2938) 0 * * Os_TE_510188 Chr2 6550802 6550803 + RETRO2A_LTR 12895 0.0401 (89/2217) 0 * * Os_TE_510180 Chr2 6548185 6548035 + ORSgTEMT00501601 153 0.7331 (2126/2900) 1 Intact Os_TE_510178 Os_TE_510178 Chr2 6548033 6548179 + ORSgTEMT00501427 149 0.7245 (2130/2940) 1 Intact Os_TE_510180 Os_TE_510177 Chr2 6547952 6547951 - ORSgTEMT00901138 254 0.1509 (446/2956) 0 * * Os_TE_510176 Chr2 6547951 6547952 - YOUREN 286 0.0766 (217/2834) 0 * * Os_TE_510169 Chr2 6546808 6546809 - COPIA2-LTR_OS 6433 0.0005 (1/1832) 0 * * Os_TE_510111 Chr2 6524277 6524276 + STOWAWAY51_OS 246 0.0009 (2/2186) 0 * Os_TE_510110 Os_TE_510110 Chr2 6524271 6524272 - STOWAWAY51_OS 246 0.0006 (1/1772) 0 * Os_TE_510111 Os_TE_510046 Chr2 6514137 6514136 - ORSgTEMT00900293 223 0.0005 (1/2169) 0 * * Os_TE_510039 Chr2 6511272 6511273 - SC-3_LTR 5748 0.0005 (1/2174) 0 * Os_TE_510038 Os_TE_510038 Chr2 6511268 6511267 + ORSiTERTOOT00296 5553 0.0005 (1/2172) 0 * Os_TE_510039 Os_TE_509999 Chr2 6492753 6492754 + SC-8_LTR 4951 0.0003 (1/2895) 0 * * Os_TE_509998 Chr2 6491380 6491381 + ORSiTERTOOT00296 5553 0.0003 (1/2996) 0 * Os_TE_509997 Os_TE_509997 Chr2 6491376 6491375 - SC-3_LTR 5748 0.0003 (1/2994) 0 * Os_TE_509998 Os_TE_509995 Chr2 6488068 6488069 + ORSiTERTOOT00296 5553 0.0010 (3/2986) 0 * Os_TE_509994 Os_TE_509994 Chr2 6488064 6488063 - SC-3_LTR 5748 0.0010 (3/2986) 0 * Os_TE_509995 Os_TE_509976 Chr2 6481513 6481514 + ORSgTEMT02000020 195 0.0514 (151/2937) 0 * * Os_TE_509974 Chr2 6480912 6480911 - ORSgTEMT00502257 142 0.1552 (458/2951) 0 * * Os_TE_509971 Chr2 6476909 6476908 + TRUNCATOR 2918 0.1537 (458/2980) 0 * Os_TE_509970 Os_TE_509970 Chr2 6476908 6476909 - TRUNCATOR 2918 0.1416 (420/2966) 0 * Os_TE_509971 Os_TE_509968 Chr2 6476359 6476360 - TRUNCATOR 2918 0.1449 (402/2774) 0 * * Os_TE_509965 Chr2 6475548 6475547 - ORSgTEMT00901345 248 0.6793 (1682/2476) 0 * Os_TE_509964 Os_TE_509964 Chr2 6475545 6475546 - ORSgTEMT00900099 250 0.5552 (1439/2592) 0 * Os_TE_509965 Os_TE_509963 Chr2 6475512 6473407 + MERMITEB 1610 0.4378 (1105/2524) 1 Intact * Os_TE_509932 Chr2 6461697 6461698 - TNR8-21 428 0.0022 (2/911) 0 * * Os_TE_509931 Chr2 6461454 6461455 + RETRO2_LTR 12874 0.0167 (15/898) 0 * Os_TE_509930 Os_TE_509930 Chr2 6461450 6461449 - RETRO2_LTR 12874 0.0168 (15/895) 0 * Os_TE_509931 Os_TE_509893 Chr2 6444976 6444977 - DITTO 244 0.0505 (151/2991) 0 * Os_TE_509892 Os_TE_509892 Chr2 6444975 6444974 + ORSgTEMT00900266 245 0.0511 (153/2994) 0 * Os_TE_509893 Os_TE_509890 Chr2 6443089 6443088 + ORSgTETNOOT00323 125 0.0007 (2/2968) 0 * * Os_TE_509889 Chr2 6443066 6443065 + ORSgTEMT00500201 140 0.6596 (1951/2958) 0.07 * Os_TE_509888 Os_TE_509888 Chr2 6443059 6443060 - ORSgTEMT00501356 145 0.6611 (1947/2945) 0 * Os_TE_509889 Os_TE_509886 Chr2 6443024 6443023 + ORSgTEMT00500201 140 0.0529 (145/2741) 0 * Os_TE_509885 Os_TE_509885 Chr2 6443023 6443024 - ORSgTETNOOT01930 140 0.0507 (150/2959) 0 * Os_TE_509886 Os_TE_509880 Chr2 6442201 6442202 + RETROSAT4_LTR 13504 0.0027 (8/2971) 0 * Os_TE_509879 Os_TE_509879 Chr2 6442197 6442196 - SZ-35LTR 3853 0.0027 (8/2983) 0 * Os_TE_509880 Os_TE_509878 Chr2 6441736 6441735 - ORSgTEMT00901723 248 0.0003 (1/2934) 0 * * Os_TE_509865 Chr2 6433103 6433102 + ORSgTEMT00502363 147 0.0007 (1/1345) 0 * * Os_TE_509843 Chr2 6427954 6427955 - SC-3_LTR 5748 0.0003 (1/2976) 0 * * Os_TE_509825 Chr2 6416007 6416008 + ORSiTETN00200006 8216 0.4731 (1345/2843) 0 * * Os_TE_509824 Chr2 6415645 6406024 + SZ-63_LTR 9602 0.3001 (888/2959) 1 Intact * Os_TE_509820 Chr2 6404025 6404026 - COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_509819 Os_TE_509819 Chr2 6404021 6404020 + COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_509820 Os_TE_509812 Chr2 6401019 6401018 - COPIA2-LTR_OS 6433 0.0003 (1/2974) 0 * * Os_TE_509811 Chr2 6400751 6400750 + NDNA1TNA_OS 334 0.0013 (4/2995) 0 * * Os_TE_509805 Chr2 6399328 6399329 + STOWAWAY44_OS 240 0.0022 (4/1828) -1 * * Os_TE_509788 Chr2 6390882 6390883 + STOWAWAY50_OS 174 0.0015 (4/2600) 0 * * Os_TE_509787 Chr2 6390426 6390427 + OLO24 345 0.0004 (1/2832) 0 * Os_TE_509786 Os_TE_509786 Chr2 6390424 6390423 - OLO24 345 0.0004 (1/2805) 0 * Os_TE_509787 Os_TE_509765 Chr2 6385946 6385945 - ORSgTEMT01601834 234 0.0568 (155/2727) 0 * * Os_TE_509764 Chr2 6385740 6385741 + ORSgTEMT00500512 153 0.0485 (143/2946) 0 * * Os_TE_509761 Chr2 6385671 6385542 - ORSgTEMT00500002 133 0.3296 (891/2703) 1 Intact Os_TE_509758 Os_TE_509758 Chr2 6385540 6385665 + ORSgTEMT00500002 133 0.7889 (1069/1355) 1 Intact Os_TE_509761 Os_TE_509752 Chr2 6384705 6384706 - ORSgTETN00200001 10994 0.2004 (269/1342) 0 * * Os_TE_509751 Chr2 6384301 6384300 + STOWAWAY1_OS 149 0.1180 (159/1348) 0 * * Os_TE_509750 Chr2 6384296 6384297 - ORSgTEMT01602413 239 0.7057 (2091/2963) 0 * * Os_TE_509749 Chr2 6383749 6383748 - ORSgTEMT01601696 238 0.1099 (168/1528) 0 * * Os_TE_509748 Chr2 6383625 6383624 - STOWAWAY11_OS 292 0.2205 (342/1551) 0 * * Os_TE_509743 Chr2 6382690 6382547 - ORSgTEMT00200018 144 0.3771 (882/2339) 1 Intact Os_TE_509740 Os_TE_509740 Chr2 6382544 6382697 + ORSgTEMT01701104 154 0.8457 (904/1069) 1 Intact Os_TE_509743 Os_TE_509729 Chr2 6377832 6376227 + OSTE15 1168 0.2966 (858/2893) 1 Intact Os_TE_509727 Os_TE_509727 Chr2 6376228 6377828 + OSMU5 4881 0.3068 (888/2894) 1 Intact Os_TE_509729 Os_TE_509719 Chr2 6374404 6374403 - ORSgTEMT01601208 238 0.0506 (150/2966) 0 * * Os_TE_509718 Chr2 6374372 6374373 + MPING 430 0.0050 (15/2979) 0 * Os_TE_509717 Os_TE_509717 Chr2 6374370 6374369 - MPING 430 0.0051 (14/2737) 0 * Os_TE_509718 Os_TE_509682 Chr2 6333711 6331472 - SEVERIN-2 1952 0.7847 (853/1087) 1 Intact Os_TE_509678 Os_TE_509678 Chr2 6331472 6333711 + SEVERIN-2 1952 0.7525 (888/1180) 1 Intact Os_TE_509682 Os_TE_509672 Chr2 6330769 6330532 - ORSgTEMT01601208 238 0.8867 (767/865) 1 Intact * Os_TE_509669 Chr2 6329759 6329760 - ORSgTEMT01701882 154 0.1463 (140/957) 0 * * Os_TE_509666 Chr2 6328412 6328411 - CLOUD 734 0.1493 (155/1038) 0 * * Os_TE_509657 Chr2 6323117 6323118 - F569 228 0.0024 (2/841) 0 * Os_TE_509656 Os_TE_509656 Chr2 6323115 6323114 + F569 228 0.0024 (2/847) 0 * Os_TE_509657 Os_TE_509642 Chr2 6320741 6320438 - ORSgTEMT00100315 323 0.7527 (913/1213) 1 Intact * Os_TE_509638 Chr2 6320436 6320741 - ORSgTEMT00100921 319 0.8702 (1059/1217) 1 Intact * Os_TE_509635 Chr2 6319401 6319400 - BAJIELTR 4500 0.1316 (161/1223) 0 * * Os_TE_509634 Chr2 6317432 6315834 + ATLANTYS-LTR_OS 13740 0.8443 (922/1092) 1 Solo_LTR * Os_TE_509628 Chr2 6314442 6314441 + STOWAWAY21_OS 243 0.0522 (149/2855) 0 * Os_TE_509627 Os_TE_509627 Chr2 6314441 6314442 + ORSgTEMT01601122 212 0.0481 (137/2846) 0 * Os_TE_509628 Os_TE_509626 Chr2 6314184 6314185 + NDNA1TNA_OS 334 0.0010 (3/2904) 0 * Os_TE_509625 Os_TE_509625 Chr2 6314182 6314181 - NDNA1TNA_OS 334 0.0015 (3/2057) 0 * Os_TE_509626 Os_TE_509624 Chr2 6314046 6314045 - COPIA2-LTR_OS 6433 0.0007 (2/2957) 0 * * Os_TE_509607 Chr2 6311100 6311101 - TELIA 141 0.0017 (5/2974) 0 * Os_TE_509606 Os_TE_509606 Chr2 6311092 6311091 + TELIA 141 0.0013 (4/2976) 0 * Os_TE_509607 Os_TE_509568 Chr2 6271551 6271552 - ORSgTEMT01600639 228 0.6519 (1717/2634) 0 * * Os_TE_509563 Chr2 6269981 6269982 + INDITTO 263 0.5428 (1618/2981) 0 * Os_TE_509562 Os_TE_509562 Chr2 6269979 6269978 - INDITTO 263 0.5410 (1608/2972) 0 * Os_TE_509563 Os_TE_509553 Chr2 6267735 6267736 - ORSgTEMT00900892 250 0.0017 (5/2993) 0 * * Os_TE_509548 Chr2 6265538 6265537 + CACTA-D 1038 0.6448 (1926/2987) 0.08 * * Os_TE_509546 Chr2 6265222 6265454 - ORSgTETNOOT02565 240 0.2967 (887/2990) 1 Intact * Os_TE_509541 Chr2 6264333 6264332 - STOWAWAY46_OS 154 0.6440 (1784/2770) 0 * * Os_TE_509539 Chr2 6262764 6262765 - TREP219 104 0.6438 (1907/2962) 0 * * Os_TE_509535 Chr2 6261321 6261498 - OsSN3 183 0.7331 (1107/1510) 1 Intact * Os_TE_509531 Chr2 6260765 6260909 + STOWAWAY50_OS 174 0.3720 (1107/2976) 1 Intact * Os_TE_509530 Chr2 6260519 6260520 + F569 228 0.6330 (1823/2880) 0 * * Os_TE_509522 Chr2 6255360 6255361 + ORSiTERTOOT00296 5553 0.0003 (1/2992) 0 * * Os_TE_509517 Chr2 6252630 6252629 - SINE03_OS 360 0.6458 (1911/2959) 0 * Os_TE_509516 Os_TE_509516 Chr2 6252605 6252606 + SINE03_OS 360 0.6378 (1851/2902) 0 * Os_TE_509517 Os_TE_509504 Chr2 6243213 6243214 - ORSgTEMT00500351 146 0.5150 (1532/2975) 0 * * Os_TE_509503 Chr2 6243144 6243047 - TREP220 109 0.5013 (1498/2988) 1 Intact * Os_TE_509490 Chr2 6236987 6236988 - DS-RICE2N 613 0.3507 (1045/2980) 0 * Os_TE_509489 Os_TE_509489 Chr2 6236980 6236979 + DS-RICE2N 613 0.3531 (1054/2985) 0 * Os_TE_509490 Os_TE_509472 Chr2 6233813 6233812 + ORSgTEMT01701056 154 0.5152 (1522/2954) 0 * * Os_TE_509452 Chr2 6221102 6221103 - CACTA-L 1162 0.6254 (1499/2397) 0 * * Os_TE_509446 Chr2 6218732 6218731 + SEVERIN-2 1952 0.0003 (1/2995) 0 * * Os_TE_509434 Chr2 6215733 6215854 + SINE1OS 127 0.3066 (919/2997) 1 Intact * Os_TE_509431 Chr2 6215348 6215347 + ORSgTEMT01400032 215 0.6721 (1857/2763) 0 * * Os_TE_509429 Chr2 6214985 6214984 + TYPEH 309 0.6125 (1421/2320) 0 * * Os_TE_509426 Chr2 6213007 6213008 + INDITTO 263 0.0438 (131/2992) 0 * * Os_TE_509404 Chr2 6196973 6196974 + MPING 430 0.0003 (1/2988) 0 * Os_TE_509403 Os_TE_509403 Chr2 6196971 6196970 - MPING 430 0.0005 (1/2152) 0 * Os_TE_509404 Os_TE_509399 Chr2 6194920 6194921 - ORSgTEMT00100296 161 0.0012 (1/810) 0 * * Os_TE_509393 Chr2 6194190 6194189 - ORSgTEMT01400019 216 0.6975 (2024/2902) 0 * Os_TE_509392 Os_TE_509392 Chr2 6194182 6194183 + ORSgTEMT01400032 215 0.6897 (1963/2846) 0 * Os_TE_509393 Os_TE_509387 Chr2 6188502 6188503 - SC-7_LTR 4431 0.2670 (793/2970) 0 * * Os_TE_509382 Chr2 6184667 6184668 - SC-3_LTR 5748 0.0007 (2/2995) 0 * Os_TE_509381 Os_TE_509381 Chr2 6184663 6184662 + ORSiTERTOOT00296 5553 0.0007 (2/2995) 0 * Os_TE_509382 Os_TE_509364 Chr2 6176113 6176114 + ORSiTEMT06300001 333 0.0010 (3/2980) 0 * * Os_TE_509354 Chr2 6174925 6175084 - ORSgTEMT00101129 160 0.8825 (931/1055) 1 Intact * Os_TE_509349 Chr2 6172128 6172129 - RETROSAT3_LTR 11537 0.0037 (11/2973) 0 * * Os_TE_509346 Chr2 6171955 6171954 + TREP215 239 0.0017 (5/2957) 0 * Os_TE_509345 Os_TE_509345 Chr2 6171950 6171951 - ORSgTEMT01601881 239 0.0017 (5/2962) 0 * Os_TE_509346 Os_TE_509342 Chr2 6170082 6170081 + OLO24B 335 0.0033 (10/2990) 0 * Os_TE_509341 Os_TE_509341 Chr2 6170078 6170079 - ORSgTEMT00101587 341 0.0037 (11/2984) 0 * Os_TE_509342 Os_TE_509326 Chr2 6163758 6163759 + AMYLTP 383 0.2468 (692/2804) 0 * Os_TE_509325 Os_TE_509325 Chr2 6163750 6163749 - AMYLTP 383 0.2854 (829/2905) 0 * Os_TE_509326 Os_TE_509324 Chr2 6162911 6162910 - ORSgTEMT01601432 239 0.0010 (3/2962) 0 * * Os_TE_509315 Chr2 6159428 6159429 - SZ-55_LTR 10318 0.0003 (1/2983) 0 * Os_TE_509314 Os_TE_509314 Chr2 6159424 6159423 + SZ-55_LTR 10318 0.0004 (1/2660) 0 * Os_TE_509315 Os_TE_509313 Chr2 6158302 6158301 + SEVERIN-2 1952 0.0003 (1/2992) 0 * * Os_TE_509293 Chr2 6148441 6148442 - RIREX_LTR 8828 0.0137 (37/2697) 0 * Os_TE_509292 Os_TE_509292 Chr2 6148437 6148436 + RIREX_LTR 8828 0.0146 (43/2951) 0 * Os_TE_509293 Os_TE_509286 Chr2 6145753 6145754 + ORSgTEMT00502437 145 0.0148 (44/2964) 0 * * Os_TE_509272 Chr2 6142008 6142009 + ORSiTETNOOT00170 3566 0.0018 (5/2782) 0 * Os_TE_509271 Os_TE_509271 Chr2 6142001 6142000 - ORSiTETNOOT00200 3563 0.0040 (11/2732) 0 * Os_TE_509272 Os_TE_509233 Chr2 6116759 6116758 + ORSgTETN00100092 209 0.0003 (1/2989) 0 * * Os_TE_509216 Chr2 6107016 6107015 - TRUNCATOR 2918 0.0083 (22/2637) 0 * Os_TE_509215 Os_TE_509215 Chr2 6107015 6107016 + TRUNCATOR 2918 0.0084 (22/2631) 0 * Os_TE_509216 Os_TE_509191 Chr2 6097454 6097453 - DITAIL 271 0.1278 (382/2990) 0 * * Os_TE_509187 Chr2 6096266 6096265 - OSMAR1 5265 0.5725 (999/1745) 0 * * Os_TE_509161 Chr2 6080781 6080782 + SINE1OS 127 0.7079 (2111/2982) 0 * Os_TE_509160 Os_TE_509160 Chr2 6080769 6080768 - SINE16_OS 116 0.7032 (2090/2972) 0 * Os_TE_509161 Os_TE_509136 Chr2 6056561 6056562 - ORSiTETNOOT00107 906 0.0038 (11/2891) -1 * * Os_TE_509130 Chr2 6055146 6055145 + ORSgTEMT01400025 210 0.0017 (5/2993) 0 * * Os_TE_509127 Chr2 6054572 6054573 + ORSgTEMT00101315 319 0.0117 (14/1194) 0 * * Os_TE_509125 Chr2 6054326 6054325 + STOLA 369 0.0017 (5/2914) 0 * * Os_TE_509099 Chr2 6037462 6037461 - NDNA1TNA_OS 334 0.0007 (2/2854) 0 * * Os_TE_509094 Chr2 6037224 6037225 - MuDR4_OS 7610 0.7011 (2081/2968) 0 * Os_TE_509093 Os_TE_509093 Chr2 6037217 6037216 - MuDR4_OS 7610 0.6707 (1829/2727) 0 * Os_TE_509094 Os_TE_509022 Chr2 6021985 6021986 + RETROSAT4_LTR 13504 0.0003 (1/2994) 0 * Os_TE_509021 Os_TE_509021 Chr2 6021981 6021980 - SZ-35LTR 3853 0.0003 (1/2992) 0 * Os_TE_509022 Os_TE_508998 Chr2 6012829 6012828 + SEVERIN-2 1952 0.6758 (2016/2983) 0 * * Os_TE_508962 Chr2 5999700 5999701 - RIREX_LTR 8828 0.0003 (1/2999) 0 * Os_TE_508961 Os_TE_508961 Chr2 5999696 5999695 + RIREX_LTR 8828 0.0003 (1/2999) 0 * Os_TE_508962 Os_TE_508960 Chr2 5999398 5998245 + SZ-29LTR 1393 0.3075 (914/2972) 1 Intact * Os_TE_508922 Chr2 5981488 5998204 - ATLANTYS-LTR_OS 13740 0.2991 (886/2962) 1 Intact * Os_TE_508917 Chr2 5980689 5980690 + ORSgTEMT01601934 207 0.0017 (5/2945) 0 * * Os_TE_508911 Chr2 5975558 5975557 + ORSgTEMT00501072 147 0.0003 (1/2957) 0 * * Os_TE_508910 Chr2 5974022 5973767 - ORSgTEMT00100491 312 0.3014 (898/2979) 1 Intact * Os_TE_508904 Chr2 5973181 5973180 + OLO24 345 0.0017 (5/2961) 0 * * Os_TE_508902 Chr2 5972681 5972682 - ORSgTEMT00501811 148 0.6720 (1754/2610) 0 * * Os_TE_508895 Chr2 5969229 5969228 - RPO_OS 1983 0.0009 (2/2123) -1 * * Os_TE_508863 Chr2 5955306 5955307 - ORSgTEMT01601696 238 0.0021 (5/2379) 0 * * Os_TE_508862 Chr2 5955285 5955284 - TRUNCATOR 2918 0.4432 (1304/2942) 0 * Os_TE_508861 Os_TE_508861 Chr2 5955284 5955285 + TRUNCATOR 2918 0.4608 (1376/2986) 0 * Os_TE_508862 Os_TE_508860 Chr2 5955266 5955267 - F569 228 0.0007 (2/2986) 0 * Os_TE_508859 Os_TE_508859 Chr2 5955264 5955263 + F569 228 0.0008 (2/2406) 0 * Os_TE_508860 Os_TE_508858 Chr2 5955198 5955197 - OSLINE1_1 4159 0.4579 (1366/2983) 0 * * Os_TE_508846 Chr2 5951188 5951187 + ORSiTERTOOT00273 5419 0.0017 (5/2914) 0 * * Os_TE_508839 Chr2 5947788 5947787 - CACTA-Q 2268 0.0007 (2/2993) 0 * * Os_TE_508835 Chr2 5946899 5946900 + RIREX_LTR 8828 0.0037 (11/2965) 0 * Os_TE_508834 Os_TE_508834 Chr2 5946895 5946894 - RIREX_LTR 8828 0.0037 (11/2957) 0 * Os_TE_508835 Os_TE_508814 Chr2 5940754 5940755 + OSTE33 1012 0.0074 (22/2993) 0 * Os_TE_508813 Os_TE_508813 Chr2 5940745 5940744 + OSTE33 1012 0.0077 (23/2991) 0 * Os_TE_508814 Os_TE_508794 Chr2 5928017 5928018 + F569 228 0.0003 (1/2985) 0 * * Os_TE_508779 Chr2 5917989 5917990 + ORSiTERTOOT00381 4988 0.1192 (357/2994) 0 * Os_TE_508778 Os_TE_508778 Chr2 5917985 5917984 - SC-8_LTR 4951 0.1194 (358/2998) 0 * Os_TE_508779 Os_TE_508743 Chr2 5896142 5896143 - COPIA2-LTR_OS 6433 0.0154 (46/2987) 0 * * Os_TE_508733 Chr2 5891713 5891714 + SPMLIKE 10989 0.0017 (5/2979) 0 * Os_TE_508732 Os_TE_508732 Chr2 5891711 5891710 - ORSgTETN00200001 10994 0.0017 (5/2981) 0 * Os_TE_508733 Os_TE_508723 Chr2 5886901 5886902 + TNR11 811 0.0003 (1/2868) 0 * * Os_TE_508680 Chr2 5875970 5875195 + MUDRN1_OS 764 0.2988 (886/2965) 1 Intact Os_TE_508679 Os_TE_508679 Chr2 5875195 5875970 - MUDRN1_OS 764 0.2941 (871/2962) 1 Intact Os_TE_508680 Os_TE_508656 Chr2 5868092 5868093 - HARB-1_OS 5166 0.0003 (1/2990) 0 * * Os_TE_508643 Chr2 5865861 5865862 + OLO24 345 0.0003 (1/2926) 0 * Os_TE_508642 Os_TE_508642 Chr2 5865859 5865858 - OLO24 345 0.0003 (1/2914) 0 * Os_TE_508643 Os_TE_508638 Chr2 5862990 5862991 + RIREX_LTR 8828 0.0003 (1/2978) 0 * Os_TE_508637 Os_TE_508637 Chr2 5862986 5862985 - RIREX_LTR 8828 0.0003 (1/2978) 0 * Os_TE_508638 Os_TE_508634 Chr2 5857887 5857888 + INDITTO 263 0.0067 (20/2982) 0 * Os_TE_508633 Os_TE_508633 Chr2 5857885 5857884 - INDITTO 263 0.0064 (19/2978) 0 * Os_TE_508634 Os_TE_508629 Chr2 5856821 5856820 + INDITTO 263 0.0067 (20/2996) 0 * Os_TE_508628 Os_TE_508628 Chr2 5856818 5856819 + ORSgTETNOOT02406 265 0.0067 (20/2992) 0 * Os_TE_508629 Os_TE_508627 Chr2 5856552 5856553 - INDITTO 263 0.0368 (110/2992) 0 * Os_TE_508626 Os_TE_508626 Chr2 5856550 5856549 + INDITTO 263 0.0366 (109/2980) 0 * Os_TE_508627 Os_TE_508625 Chr2 5856380 5856381 + INDITTO 263 0.0111 (33/2985) 0 * Os_TE_508624 Os_TE_508624 Chr2 5856378 5856377 - INDITTO 263 0.0121 (36/2982) 0 * Os_TE_508625 Os_TE_508623 Chr2 5855633 5855632 - STOWAWAY45_OS 266 0.0013 (4/2995) 0 * Os_TE_508622 Os_TE_508622 Chr2 5855630 5855631 + STOWAWAY45_OS 266 0.0013 (4/2992) 0 * Os_TE_508623 Os_TE_508621 Chr2 5855263 5855264 - MPING 430 0.0003 (1/2996) 0 * Os_TE_508620 Os_TE_508620 Chr2 5855261 5855260 + MPING 430 0.0003 (1/2996) 0 * Os_TE_508621 Os_TE_508619 Chr2 5855202 5855203 + HARB-1_OS 5166 0.0311 (93/2993) 0 * Os_TE_508618 Os_TE_508618 Chr2 5855200 5855199 - HARB-1_OS 5166 0.0311 (93/2989) 0 * Os_TE_508619 Os_TE_508591 Chr2 5838006 5838007 + ORSiTERTOOT00296 5553 0.0003 (1/2976) 0 * Os_TE_508590 Os_TE_508590 Chr2 5838002 5838001 - SC-3_LTR 5748 0.0003 (1/2978) 0 * Os_TE_508591 Os_TE_508558 Chr2 5822618 5822619 + TNR2A 152 0.4373 (1190/2721) 0 * * Os_TE_508555 Chr2 5821928 5821927 + TRUNCATOR 2918 0.0003 (1/2935) 0 * Os_TE_508554 Os_TE_508554 Chr2 5821927 5821928 - TRUNCATOR 2918 0.0003 (1/2944) 0 * Os_TE_508555 Os_TE_508552 Chr2 5821317 5821316 - ORSgTETN00200001 10994 0.0013 (4/2983) 0 * * Os_TE_508543 Chr2 5817296 5817297 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_508542 Os_TE_508542 Chr2 5817292 5817291 + COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * Os_TE_508543 Os_TE_508490 Chr2 5803311 5803312 + ORSiTERTOOT00296 5553 0.0003 (1/2987) 0 * Os_TE_508489 Os_TE_508489 Chr2 5803307 5803306 - SC-3_LTR 5748 0.0003 (1/2988) 0 * Os_TE_508490 Os_TE_508482 Chr2 5789269 5789270 - OSTE33 1012 0.5154 (1542/2992) 0 * Os_TE_508481 Os_TE_508481 Chr2 5789258 5789257 - OSTE33 1012 0.4680 (1273/2720) 0 * Os_TE_508482 Os_TE_508461 Chr2 5780459 5780460 + SZ-22_LTR 4403 0.0003 (1/2977) 0 * Os_TE_508460 Os_TE_508460 Chr2 5780455 5780454 - SZ-22_LTR 4403 0.0003 (1/2972) 0 * Os_TE_508461 Os_TE_508457 Chr2 5779563 5779562 - RETROSAT3_LTR 11537 0.0004 (1/2780) 0 * * Os_TE_508447 Chr2 5774974 5774973 - ORSgTEMT02400246 177 0.0003 (1/2935) 0 * * Os_TE_508445 Chr2 5774846 5774845 - SZ-67LTR 1540 0.7007 (2088/2980) 0 * * Os_TE_508444 Chr2 5774844 5774845 + SZ-67LTR 1540 0.7002 (2079/2969) 0 * Os_TE_508443 Os_TE_508443 Chr2 5774840 5774839 - SZ-67LTR 1540 0.7028 (2098/2985) 0 * Os_TE_508444 Os_TE_508426 Chr2 5767618 5767619 - GYPSY-A_LTR 8951 0.2093 (625/2986) 0 * Os_TE_508425 Os_TE_508425 Chr2 5767614 5767613 + GYPSY-A_LTR 8951 0.2111 (630/2984) 0 * Os_TE_508426 Os_TE_508391 Chr2 5757025 5757024 + COPIA2-LTR_OS 6433 0.0010 (3/2995) 0 * * Os_TE_508389 Chr2 5754974 5754973 + ORSgTEMT01601591 242 0.0003 (1/2971) 0 * * Os_TE_508372 Chr2 5751980 5751979 + STOWAWAY51_OS 246 0.0003 (1/2991) 0 * Os_TE_508371 Os_TE_508371 Chr2 5751974 5751975 - STOWAWAY51_OS 246 0.0003 (1/2996) 0 * Os_TE_508372 Os_TE_508364 Chr2 5749995 5749994 + RETRO2_LTR 12874 0.6827 (1956/2865) 0 * * Os_TE_508331 Chr2 5719857 5719858 + ORSiTERTOOT00296 5553 0.0003 (1/2966) 0 * Os_TE_508330 Os_TE_508330 Chr2 5719853 5719852 - SC-3_LTR 5748 0.0003 (1/2969) 0 * Os_TE_508331 Os_TE_508324 Chr2 5715202 5715201 - SC-3_LTR 5748 0.0064 (19/2988) 0 * * Os_TE_508265 Chr2 5693053 5693054 - SC-8_LTR 4951 0.0010 (3/2996) 0 * Os_TE_508264 Os_TE_508264 Chr2 5693049 5693048 + SC-8_LTR 4951 0.0010 (3/2997) 0 * Os_TE_508265 Os_TE_508207 Chr2 5677548 5677547 + STOWAWAY51_OS 246 0.0003 (1/2990) 0 * * Os_TE_508167 Chr2 5670416 5670417 + STOWAWAY51_OS 246 0.0003 (1/2896) 0 * * Os_TE_508144 Chr2 5660530 5660531 + ORSiTERT00200069 6058 0.0007 (2/2928) 0 * * Os_TE_508124 Chr2 5654200 5654199 + WUWU 113 0.0007 (2/2952) 0 * * Os_TE_508100 Chr2 5645361 5645362 - RIRE2_LTR 11306 0.0044 (12/2701) 0 * Os_TE_508099 Os_TE_508099 Chr2 5645357 5645356 - ORSgTERT00201216 11284 0.0036 (10/2757) 0 * Os_TE_508100 Os_TE_508087 Chr2 5638235 5638234 - STOWAWAY51_OS 246 0.0037 (11/2990) 0 * Os_TE_508086 Os_TE_508086 Chr2 5638229 5638230 + STOWAWAY51_OS 246 0.0038 (11/2926) 0 * Os_TE_508087 Os_TE_508069 Chr2 5625024 5625025 + ORSiTERTOOT00296 5553 0.0003 (1/2981) 0 * Os_TE_508068 Os_TE_508068 Chr2 5625020 5625019 - SC-3_LTR 5748 0.0004 (1/2836) 0 * Os_TE_508069 Os_TE_508065 Chr2 5623108 5623109 + ORSgTEMT01601591 242 0.0003 (1/2956) 0 * * Os_TE_508049 Chr2 5617220 5617221 + ORSgTEMT01601426 233 0.0004 (1/2834) 0 * * Os_TE_508046 Chr2 5616852 5616851 - MERMITE18B 1306 0.0007 (2/2967) 0 * * Os_TE_508030 Chr2 5610775 5610774 + ORSgTEMT01601591 242 0.0057 (17/2972) 0 * Os_TE_508029 Os_TE_508029 Chr2 5610769 5610770 + STOWAWAY51_OS 246 0.0060 (18/2976) 0 * Os_TE_508030 Os_TE_508020 Chr2 5602002 5602001 - SZ-COM 1308 0.0014 (4/2793) 0 * * Os_TE_507997 Chr2 5589651 5589652 - SC-7_LTR 4431 0.0010 (3/2978) 0 * Os_TE_507996 Os_TE_507996 Chr2 5589647 5589646 + SC-7_LTR 4431 0.0010 (3/2979) 0 * Os_TE_507997 Os_TE_507994 Chr2 5585245 5585246 - SZ-22_LTR 4403 0.0003 (1/2956) 0 * Os_TE_507993 Os_TE_507993 Chr2 5585241 5585240 + ORSiTERTOOT00226 792 0.0003 (1/2961) 0 * Os_TE_507994 Os_TE_507992 Chr2 5584226 5584227 + RETROSAT2LTR 12796 0.0167 (50/2986) 0 * Os_TE_507991 Os_TE_507991 Chr2 5584224 5584223 - RETROSAT2LTR 12796 0.0167 (50/2992) 0 * Os_TE_507992 Os_TE_507982 Chr2 5581246 5581247 - DNAUN1_OS 408 0.0017 (5/2937) 0 * * Os_TE_507960 Chr2 5573115 5572697 + ORSgTEMT00300069 394 0.4293 (1172/2730) 1 Intact Os_TE_507959 Os_TE_507959 Chr2 5572693 5573109 + ORSgTEMT00300122 416 0.4463 (1268/2841) 1 Intact Os_TE_507960 Os_TE_507950 Chr2 5570272 5570628 - SINE03_OS 360 0.8988 (2479/2758) 1 Intact * Os_TE_507904 Chr2 5559140 5559141 + INDITTO 263 0.0891 (262/2940) 0 * * Os_TE_507902 Chr2 5559079 5559080 - INDITTO 263 0.0170 (51/2992) 0 * * Os_TE_507848 Chr2 5544751 5544752 - COPIA2-LTR_OS 6433 0.0017 (5/2958) 0 * * Os_TE_507797 Chr2 5529905 5529906 + RETRO2A_LTR 12895 0.4576 (1306/2854) 0 * Os_TE_507796 Os_TE_507796 Chr2 5529901 5529900 - RETRO1_LTR 8314 0.4614 (1332/2887) 0 * Os_TE_507797 Os_TE_507763 Chr2 5519377 5519378 + INDITTO 263 0.0047 (14/2980) 0 * Os_TE_507762 Os_TE_507762 Chr2 5519375 5519374 - INDITTO 263 0.0047 (14/2973) 0 * Os_TE_507763 Os_TE_507739 Chr2 5498532 5498533 + ORSgTERT00200022 345 0.0004 (1/2813) 0 * * Os_TE_507721 Chr2 5496060 5496061 - TRUNCATOR 2918 0.0334 (100/2994) 0 * * Os_TE_507700 Chr2 5485584 5485585 + ORSiTERTOOT00296 5553 0.0007 (2/2996) 0 * Os_TE_507699 Os_TE_507699 Chr2 5485580 5485579 - SC-3_LTR 5748 0.0007 (2/2994) 0 * Os_TE_507700 Os_TE_507661 Chr2 5462660 5462659 + SC-8_LTR 4951 0.0003 (1/2972) 0 * * Os_TE_507653 Chr2 5455023 5455024 + ORSiTERTOOT00296 5553 0.0003 (1/2986) 0 * Os_TE_507652 Os_TE_507652 Chr2 5455019 5455018 - SC-3_LTR 5748 0.0003 (1/2986) 0 * Os_TE_507653 Os_TE_507624 Chr2 5439945 5439946 + RIREX_LTR 8828 0.0491 (130/2645) 0 * Os_TE_507623 Os_TE_507623 Chr2 5439941 5439940 - RIREX_LTR 8828 0.0473 (125/2642) 0 * Os_TE_507624 Os_TE_507571 Chr2 5416384 5416385 - MPING 430 0.0955 (286/2995) 0 * Os_TE_507570 Os_TE_507570 Chr2 5416382 5416381 + MPING 430 0.0953 (285/2991) 0 * Os_TE_507571 Os_TE_507485 Chr2 5380333 5380334 + TWIFB1 3737 0.0003 (1/2987) 0 * * Os_TE_507478 Chr2 5375133 5375134 + ORSiTERTOOT00296 5553 0.0017 (5/2991) 0 * Os_TE_507477 Os_TE_507477 Chr2 5375129 5375128 - SC-3_LTR 5748 0.0017 (5/2989) 0 * Os_TE_507478 Os_TE_507476 Chr2 5374225 5374226 + ORSiTERTOOT00296 5553 0.0003 (1/2990) 0 * * Os_TE_507466 Chr2 5370346 5370347 + OSTONOR1_LTR 6440 0.0003 (1/2989) 0 * * Os_TE_507450 Chr2 5357248 5357249 - MPING 430 0.0003 (1/2948) 0 * Os_TE_507449 Os_TE_507449 Chr2 5357246 5357245 + MPING 430 0.0003 (1/2936) 0 * Os_TE_507450 Os_TE_507415 Chr2 5326587 5326588 - SC-3_LTR 5748 0.0164 (49/2983) 0 * Os_TE_507414 Os_TE_507414 Chr2 5326583 5326582 + ORSiTERTOOT00296 5553 0.0164 (49/2987) 0 * Os_TE_507415 Os_TE_507411 Chr2 5321286 5321287 + RETRO1_LTR 8314 0.0003 (1/2983) 0 * Os_TE_507410 Os_TE_507410 Chr2 5321282 5321281 - RETRO1_LTR 8314 0.0003 (1/2975) 0 * Os_TE_507411 Os_TE_507392 Chr2 5317148 5317149 + SINE1R5_OS 121 0.6625 (1898/2865) 0 * * Os_TE_507386 Chr2 5312546 5312547 - RIREX_LTR 8828 0.0003 (1/2936) 0 * * Os_TE_507380 Chr2 5310356 5310357 + ORSgTEMT00600124 361 0.0017 (5/2976) 0 * * Os_TE_507379 Chr2 5310355 5310354 - ORSgTEMT02400179 221 0.0017 (5/2932) 0 * * Os_TE_507378 Chr2 5309661 5309662 - COPI2_LTR 4733 0.0034 (10/2984) 0 * Os_TE_507377 Os_TE_507377 Chr2 5309657 5309656 + COPI2_LTR 4733 0.0030 (9/2980) 0 * Os_TE_507378 Os_TE_507335 Chr2 5295770 5295771 + GYPSY-A_LTR 8951 0.0030 (9/2993) 0 * Os_TE_507334 Os_TE_507334 Chr2 5295766 5295765 - GYPSY-A_LTR 8951 0.0030 (9/2997) 0 * Os_TE_507335 Os_TE_507317 Chr2 5286815 5286816 - HARB-1_OS 5166 0.0003 (1/2987) 0 * Os_TE_507316 Os_TE_507316 Chr2 5286813 5286812 + HARB-1_OS 5166 0.0003 (1/2994) 0 * Os_TE_507317 Os_TE_507288 Chr2 5278924 5278925 - DS-RICE2N 613 0.0032 (9/2855) 0 * * Os_TE_507253 Chr2 5258855 5258856 - COPIA2-LTR_OS 6433 0.0003 (1/2975) 0 * Os_TE_507252 Os_TE_507252 Chr2 5258851 5258850 + COPIA2-LTR_OS 6433 0.0003 (1/2971) 0 * Os_TE_507253 Os_TE_507251 Chr2 5258236 5258237 + ORSgTETNOOT00908 242 0.0041 (12/2956) 0 * * Os_TE_507250 Chr2 5258234 5258233 - ORSgTETNOOT00908 242 0.0003 (1/2937) 0 * * Os_TE_507234 Chr2 5242588 5242253 + ORSgTEMT00101341 314 0.6957 (2064/2967) 1 Intact Os_TE_507232 Os_TE_507232 Chr2 5242250 5242585 - NDNA1TNA_OS 334 0.6993 (2091/2990) 1 Intact Os_TE_507234 Os_TE_507204 Chr2 5234773 5234772 - ORSgTEMT02400246 177 0.0027 (8/2984) 0 * Os_TE_507203 Os_TE_507203 Chr2 5234772 5234773 - TYPEM 227 0.0027 (8/2985) 0 * Os_TE_507204 Os_TE_507201 Chr2 5233715 5233716 + DS-RICE2N 613 0.6189 (1843/2978) 0 * * Os_TE_507180 Chr2 5216449 5216450 + OSCOPIA2_LTR 5476 0.0003 (1/2981) 0 * Os_TE_507179 Os_TE_507179 Chr2 5216445 5216444 - OSCOPIA2_LTR 5476 0.0003 (1/2982) 0 * Os_TE_507180 Os_TE_507141 Chr2 5197719 5197718 - ORSgTEMT06000292 191 0.0003 (1/2926) 0 * * Os_TE_507122 Chr2 5193517 5193518 - STOWAWAY51_OS 246 0.0003 (1/2963) 0 * * Os_TE_507119 Chr2 5192777 5192778 - RIREX_LTR 8828 0.0010 (3/2965) 0 * * Os_TE_507113 Chr2 5191262 5191261 + RIRE5-LTR_OS 6427 0.0014 (4/2796) 0 * * Os_TE_507110 Chr2 5191080 5190864 + ORSgTEMT01601058 231 0.3665 (1043/2846) 1 Intact * Os_TE_507107 Chr2 5190274 5190063 + ORSgTEMT01601122 212 0.4521 (1019/2254) 1 Intact Os_TE_507105 Os_TE_507105 Chr2 5190035 5190274 + ORSgTEMT01601122 212 0.3365 (997/2963) 1 Intact Os_TE_507107 Os_TE_507102 Chr2 5187070 5187071 - INDITTO 263 0.0033 (10/2995) 0 * Os_TE_507101 Os_TE_507101 Chr2 5187068 5187067 + INDITTO 263 0.0033 (10/2995) 0 * Os_TE_507102 Os_TE_507091 Chr2 5184632 5184633 + F1275 157 0.6212 (1832/2949) -1 * * Os_TE_506992 Chr2 5127887 5127888 - RIREX_LTR 8828 0.0003 (1/2962) 0 * Os_TE_506991 Os_TE_506991 Chr2 5127883 5127882 + RIREX_LTR 8828 0.0003 (1/2968) 0 * Os_TE_506992 Os_TE_506984 Chr2 5122341 5122342 - HARB-1_OS 5166 0.0003 (1/2967) 0 * * Os_TE_506979 Chr2 5117369 5117370 + RIREX_LTR 8828 0.0003 (1/2973) 0 * Os_TE_506978 Os_TE_506978 Chr2 5117365 5117364 - RIREX_LTR 8828 0.0003 (1/2971) 0 * Os_TE_506979 Os_TE_506974 Chr2 5114223 5114224 - OSLINE1-5 4688 0.0007 (2/2942) 0 * * Os_TE_506942 Chr2 5102738 5102737 + SEVERIN-2 1952 0.6310 (1881/2981) 0 * * Os_TE_506897 Chr2 5092234 5089003 + ORSiCMCM00100019 2717 0.3715 (1106/2977) 1 Intact * Os_TE_506883 Chr2 5083565 5083566 - SZ-22_LTR 4403 0.0004 (1/2671) 0 * * Os_TE_506865 Chr2 5076737 5076736 + MUDRN5_OS 374 0.0003 (1/2983) 0 * * Os_TE_506862 Chr2 5074052 5074053 - SC-8_LTR 4951 0.0013 (4/2970) 0 * Os_TE_506861 Os_TE_506861 Chr2 5074048 5074047 + SC-8_LTR 4951 0.0013 (4/2980) 0 * Os_TE_506862 Os_TE_506858 Chr2 5071679 5071678 + ORSiTERTOOT00296 5553 0.0003 (1/2979) 0 * * Os_TE_506856 Chr2 5069742 5069743 - OSR3_LTR 5201 0.0003 (1/2989) 0 * Os_TE_506855 Os_TE_506855 Chr2 5069738 5069737 + OSR3_LTR 5201 0.0003 (1/2975) 0 * Os_TE_506856 Os_TE_506852 Chr2 5063971 5063972 - MuDR2_OS 6770 0.0013 (4/2990) 0 * Os_TE_506851 Os_TE_506851 Chr2 5063962 5063961 + MuDR2_OS 6770 0.0013 (4/2991) 0 * Os_TE_506852 Os_TE_506842 Chr2 5053015 5053014 - ORSgTEMT01601208 238 0.0117 (35/2989) 0 * Os_TE_506841 Os_TE_506841 Chr2 5053012 5053013 + ORSgTEMT01601809 239 0.0077 (23/2973) 0 * Os_TE_506842 Os_TE_506839 Chr2 5052877 5052876 - ORSgTEMT01600639 228 0.0095 (26/2731) 0 * Os_TE_506838 Os_TE_506838 Chr2 5052874 5052875 - ORSgTEMT01601208 238 0.0121 (33/2732) 0 * Os_TE_506839 Os_TE_506837 Chr2 5052294 5052295 - RIREX_LTR 8828 0.0003 (1/2996) 0 * Os_TE_506836 Os_TE_506836 Chr2 5052290 5052289 + RIREX_LTR 8828 0.0003 (1/2994) 0 * Os_TE_506837 Os_TE_506835 Chr2 5051784 5051783 + F118 179 0.0110 (33/2987) 0 * * Os_TE_506834 Chr2 5051686 5051685 + STOWAWAY41_OS 264 0.0010 (3/2977) 0 * * Os_TE_506825 Chr2 5047316 5047317 - MuDR3_OS 8604 0.1055 (314/2975) 0 * * Os_TE_506821 Chr2 5044711 5044712 + MPING 430 0.0003 (1/2995) 0 * Os_TE_506820 Os_TE_506820 Chr2 5044709 5044708 - MPING 430 0.0003 (1/2992) 0 * Os_TE_506821 Os_TE_506805 Chr2 5037161 5037160 - LINE5A 437 0.0003 (1/2881) 0 * * Os_TE_506793 Chr2 5034450 5034451 + MPING 430 0.0003 (1/2990) 0 * Os_TE_506792 Os_TE_506792 Chr2 5034448 5034447 - MPING 430 0.0003 (1/2989) 0 * Os_TE_506793 Os_TE_506753 Chr2 5019091 5019092 - DITTO 244 0.0003 (1/2954) 0 * * Os_TE_506751 Chr2 5018781 5018780 - STOWAWAY43_OS 233 0.2410 (718/2979) 0 * * Os_TE_506746 Chr2 5015417 5015418 - ORSgTEMT00600304 361 0.0093 (27/2896) 0 * Os_TE_506745 Os_TE_506745 Chr2 5015414 5015413 - CASTAWAY 364 0.0100 (29/2901) 0 * Os_TE_506746 Os_TE_506705 Chr2 5005132 5005131 - ORSgTEMT00501443 152 0.0003 (1/2975) 0 * * Os_TE_506700 Chr2 5003470 5003469 - STOWAWAY51_OS 246 0.0003 (1/2981) 0 * Os_TE_506699 Os_TE_506699 Chr2 5003464 5003465 + STOWAWAY51_OS 246 0.0003 (1/2982) 0 * Os_TE_506700 Os_TE_506698 Chr2 5002974 5002649 - NDNA2TNA_OS 346 0.6301 (1872/2971) 1 Intact * Os_TE_506697 Chr2 5002963 5002962 - ORSgTETNOOT02565 240 0.1865 (554/2970) 0 * * Os_TE_506694 Chr2 5002631 5002632 + ORSgTETNOOT00012 241 0.2169 (519/2393) 0 * * Os_TE_506689 Chr2 5001012 5001013 - TELIA 141 0.0004 (1/2856) 0 * * Os_TE_506681 Chr2 4999140 4999139 + ORSgTEMT03800093 362 0.0004 (1/2827) 0 * * Os_TE_506677 Chr2 4997852 4997851 - ORSgTERT00201216 11284 0.0016 (3/1897) 0 * * Os_TE_506676 Chr2 4995558 4995559 - ORSgTETNOOT01930 140 0.0104 (31/2989) 0 * Os_TE_506675 Os_TE_506675 Chr2 4995556 4995555 + ORSgTETNOOT01930 140 0.0104 (31/2990) 0 * Os_TE_506676 Os_TE_506608 Chr2 4964365 4964366 - SZ-9LTR 965 0.0124 (37/2992) 0 * Os_TE_506607 Os_TE_506607 Chr2 4964361 4964360 + SZ-9LTR 965 0.0124 (37/2990) 0 * Os_TE_506608 Os_TE_506587 Chr2 4954923 4954924 - SC-8_LTR 4951 0.0007 (2/2989) 0 * Os_TE_506586 Os_TE_506586 Chr2 4954919 4954918 + SC-8_LTR 4951 0.0003 (1/2987) 0 * Os_TE_506587 Os_TE_506565 Chr2 4946572 4946573 - ORSgTEMT01600650 234 0.2893 (853/2949) 0 * Os_TE_506564 Os_TE_506564 Chr2 4946569 4946568 - ORSgTEMT01601493 303 0.2826 (832/2944) 0 * Os_TE_506565 Os_TE_506563 Chr2 4946566 4946567 + ORSgTEMT01601934 207 0.2914 (858/2944) 0 * * Os_TE_506560 Chr2 4944688 4944689 - KIDDOC 275 0.0003 (1/2971) 0 * * Os_TE_506558 Chr2 4939540 4939539 + SC-8_LTR 4951 0.0003 (1/2927) 0 * * Os_TE_506543 Chr2 4934745 4934744 + RETROSAT3_LTR 11537 0.0104 (29/2800) 0 * * Os_TE_506535 Chr2 4930609 4927119 + ORSiTERT00200145 12238 0.7967 (2340/2937) 1 Intact Os_TE_506528 Os_TE_506528 Chr2 4927119 4930608 - SZ-67LTR 1540 0.8056 (2396/2974) 1 Intact Os_TE_506535 Os_TE_506472 Chr2 4899797 4899798 + F770 284 0.2971 (875/2945) 0 * Os_TE_506471 Os_TE_506471 Chr2 4899795 4899794 - F770 284 0.2984 (873/2926) 0 * Os_TE_506472 Os_TE_506433 Chr2 4892169 4892168 + ORSgTEMT01601591 242 0.0440 (130/2952) 0 * Os_TE_506432 Os_TE_506432 Chr2 4892163 4892164 + STOWAWAY51_OS 246 0.0422 (124/2941) 0 * Os_TE_506433 Os_TE_506427 Chr2 4891677 4891678 - INDITTO 263 0.6051 (1655/2735) 0 * * Os_TE_506402 Chr2 4886484 4886483 + STOWAWAY51_OS 246 0.0977 (288/2947) 0 * * Os_TE_506373 Chr2 4874074 4874073 + MPING 430 0.0003 (1/2993) 0 * * Os_TE_506372 Chr2 4873770 4873771 - ORSiTERT00100062 5674 0.0354 (106/2995) 0 * Os_TE_506371 Os_TE_506371 Chr2 4873766 4873765 + OSTONOR1_LTR 6440 0.0365 (109/2987) 0 * Os_TE_506372 Os_TE_506370 Chr2 4873695 4873696 - ORSiTERT00100062 5674 0.0007 (2/2995) 0 * Os_TE_506369 Os_TE_506369 Chr2 4873691 4873690 + OSTONOR1_LTR 6440 0.0007 (2/2995) 0 * Os_TE_506370 Os_TE_506368 Chr2 4873661 4873662 - RIRE2_LTR 11306 0.0013 (4/2994) 0 * Os_TE_506367 Os_TE_506367 Chr2 4873657 4873656 + RIREX_LTR 8828 0.0013 (4/2993) 0 * Os_TE_506368 Os_TE_506365 Chr2 4871721 4871722 - COPI2_LTR 4733 0.0007 (2/2993) 0 * Os_TE_506364 Os_TE_506364 Chr2 4871717 4871716 + COPI2_LTR 4733 0.0007 (2/2993) 0 * Os_TE_506365 Os_TE_506355 Chr2 4869797 4869798 + NDNA2TNA_OS 346 0.0010 (3/2991) 0 * Os_TE_506354 Os_TE_506354 Chr2 4869795 4869794 - NDNA2TNA_OS 346 0.0030 (9/2998) 0 * Os_TE_506355 Os_TE_506353 Chr2 4869536 4869537 + RIREX_LTR 8828 0.0067 (20/2999) 0 * * Os_TE_506334 Chr2 4863894 4863893 - CASTAWAY 364 0.7407 (2194/2962) 0 * * Os_TE_506324 Chr2 4855219 4855220 + COPI2_LTR 4733 0.0007 (2/2914) 0 * * Os_TE_506317 Chr2 4854287 4854286 + DITAILA 257 0.0020 (6/2971) 0 * Os_TE_506316 Os_TE_506316 Chr2 4854283 4854284 - DITAILA 257 0.0020 (6/2965) 0 * Os_TE_506317 Os_TE_506294 Chr2 4843306 4843305 + CACTA-B 1103 0.0027 (8/2985) 0 * Os_TE_506293 Os_TE_506293 Chr2 4843305 4843306 - CACTA-H 1152 0.0027 (8/2990) 0 * Os_TE_506294 Os_TE_506248 Chr2 4830615 4830614 - OSTE18 129 0.0030 (9/2980) 0 * * Os_TE_506237 Chr2 4825891 4825892 + AMYLTP 383 0.0017 (5/2988) 0 * Os_TE_506236 Os_TE_506236 Chr2 4825883 4825882 - AMYLTP 383 0.0017 (5/2990) 0 * Os_TE_506237 Os_TE_506205 Chr2 4815284 4815285 - AMYLTP 383 0.0010 (3/2993) 0 * Os_TE_506204 Os_TE_506204 Chr2 4815276 4815275 + AMYLTP 383 0.0010 (3/2993) 0 * Os_TE_506205 Os_TE_506175 Chr2 4800479 4800480 - TRUNCATOR2_LTR 2904 0.0014 (4/2922) 0 * * Os_TE_506172 Chr2 4800221 4800220 + OSMAR1 5265 0.3883 (1008/2596) 0 * * Os_TE_506163 Chr2 4799129 4799128 + TRUNCATOR2_LTR 2904 0.0003 (1/2942) 0 * * Os_TE_506122 Chr2 4777370 4783881 + SZ-48LTR 3632 0.1591 (433/2722) 1 Intact * Os_TE_506121 Chr2 4776668 4776669 + RETRO2A_LTR 12895 0.1991 (593/2978) 0 * Os_TE_506120 Os_TE_506120 Chr2 4776664 4776663 - RETRO1_LTR 8314 0.1971 (586/2973) 0 * Os_TE_506121 Os_TE_506106 Chr2 4770208 4770209 + COPI2_LTR 4733 0.0007 (2/2962) 0 * Os_TE_506105 Os_TE_506105 Chr2 4770204 4770203 - COPI2_LTR 4733 0.0007 (2/2964) 0 * Os_TE_506106 Os_TE_506089 Chr2 4759786 4759787 - F770 284 0.0010 (3/2902) 0 * Os_TE_506088 Os_TE_506088 Chr2 4759784 4759783 + F770 284 0.0010 (3/2915) 0 * Os_TE_506089 Os_TE_506087 Chr2 4759631 4759632 - RETRO1_LTR 8314 0.0024 (6/2482) 0 * Os_TE_506086 Os_TE_506086 Chr2 4759627 4759626 + RETRO1_LTR 8314 0.0027 (8/2945) 0 * Os_TE_506087 Os_TE_506071 Chr2 4756748 4756747 + ORSgTEMT00502171 134 0.0010 (3/2964) 0 * * Os_TE_506070 Chr2 4755182 4755183 - COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * * Os_TE_506048 Chr2 4748511 4748512 - SZ-9LTR 965 0.0010 (3/2974) 0 * * Os_TE_506017 Chr2 4734350 4734349 + ORSgTEMT00502171 134 0.0061 (18/2934) 0 * * Os_TE_505973 Chr2 4720823 4720824 + OSTE33 1012 0.0017 (5/2992) 0 * Os_TE_505972 Os_TE_505972 Chr2 4720814 4720813 + OSTE33 1012 0.0017 (5/2972) 0 * Os_TE_505973 Os_TE_505964 Chr2 4716290 4716291 - COPI2_LTR 4733 0.0010 (3/2998) 0 * Os_TE_505963 Os_TE_505963 Chr2 4716286 4716285 + COPI2_LTR 4733 0.0010 (3/2998) 0 * Os_TE_505964 Os_TE_505962 Chr2 4715316 4715315 - STOWAWAY1_OS 149 0.0070 (21/2984) 0 * Os_TE_505961 Os_TE_505961 Chr2 4715315 4715316 - ORSgTEMT01702045 137 0.0070 (21/2991) 0 * Os_TE_505962 Os_TE_505960 Chr2 4714997 4714998 + MUDRN2_OS 756 0.3129 (934/2985) 0 * * Os_TE_505942 Chr2 4707619 4707620 - NDNA1TNA_OS 334 0.5447 (1603/2943) 0 * * Os_TE_505936 Chr2 4707280 4707281 - OLO24 345 0.0014 (4/2946) 0 * * Os_TE_505922 Chr2 4705522 4705521 + ORSgTETNOOT00032 218 0.0023 (7/2983) 0 * * Os_TE_505919 Chr2 4705289 4705290 - AMYLTP 383 0.0020 (6/2971) 0 * * Os_TE_505901 Chr2 4702135 4702134 - ORSgTEMT00901345 248 0.0013 (4/2982) 0 * Os_TE_505900 Os_TE_505900 Chr2 4702133 4702134 - ORSgTEMT00900892 250 0.0013 (4/2978) 0 * Os_TE_505901 Os_TE_505899 Chr2 4701609 4701608 - ORSgTEMT00100799 337 0.0007 (2/2980) 0 * Os_TE_505898 Os_TE_505898 Chr2 4701608 4701609 + NDNA1TNA_OS 334 0.0013 (4/2980) 0 * Os_TE_505899 Os_TE_505883 Chr2 4690411 4690412 - OSTE24 683 0.0013 (4/2999) 0 * Os_TE_505882 Os_TE_505882 Chr2 4690400 4690399 - OSTE24 683 0.0017 (5/2973) 0 * Os_TE_505883 Os_TE_505857 Chr2 4679973 4679974 + COPI2_LTR 4733 0.0025 (7/2826) 0 * Os_TE_505856 Os_TE_505856 Chr2 4679969 4679968 - COPI2_LTR 4733 0.0032 (9/2824) 0 * Os_TE_505857 Os_TE_505841 Chr2 4668935 4668934 - F118 179 0.0017 (5/2992) 0 * * Os_TE_505832 Chr2 4663150 4663151 - STOWAWAY14_OS 258 0.0003 (1/2961) 0 * * Os_TE_505789 Chr2 4654409 4654410 + DITTO-2 235 0.8509 (2506/2945) 0 * * Os_TE_505762 Chr2 4646914 4646915 - MuDR2_OS 6770 0.0007 (2/2951) 0 * * Os_TE_505747 Chr2 4636636 4636637 + ORSiTERTOOT00296 5553 0.0003 (1/2993) 0 * Os_TE_505746 Os_TE_505746 Chr2 4636632 4636631 - SC-3_LTR 5748 0.0007 (2/2989) 0 * Os_TE_505747 Os_TE_505744 Chr2 4635769 4635770 - SC-3_LTR 5748 0.0791 (237/2995) 0 * Os_TE_505743 Os_TE_505743 Chr2 4635765 4635764 + ORSiTERTOOT00296 5553 0.0805 (241/2995) 0 * Os_TE_505744 Os_TE_505717 Chr2 4623514 4623513 - AMYLTP 383 0.5561 (1651/2969) 0 * * Os_TE_505716 Chr2 4622919 4622707 + ORSgTEMT01601122 212 0.1425 (422/2962) 1 Intact Os_TE_505715 Os_TE_505715 Chr2 4622681 4622917 + STOWAWAY21_OS 243 0.1410 (417/2958) -1 Intact Os_TE_505716 Os_TE_505706 Chr2 4617873 4617874 - SC-3_LTR 5748 0.0003 (1/2983) 0 * Os_TE_505705 Os_TE_505705 Chr2 4617869 4617868 + ORSiTERTOOT00296 5553 0.0003 (1/2989) 0 * Os_TE_505706 Os_TE_505703 Chr2 4616688 4616687 - NDNA1TNA_OS 334 0.5799 (1710/2949) 0 * Os_TE_505702 Os_TE_505702 Chr2 4616686 4616687 + NDNA1TNA_OS 334 0.5874 (1744/2969) 0 * Os_TE_505703 Os_TE_505701 Chr2 4616601 4616602 + NDNA1TNA_OS 334 0.0003 (1/2958) 0 * * Os_TE_505691 Chr2 4615089 4615088 + TNR2 157 0.0057 (17/2973) 0 * * Os_TE_505685 Chr2 4614275 4614276 - STOWAWAY50_OS 174 0.0068 (20/2961) 0 * * Os_TE_505672 Chr2 4612216 4612215 + STOWAWAY48_OS 261 0.0057 (16/2829) 0 * * Os_TE_505651 Chr2 4608742 4608741 - STOWAWAY51_OS 246 0.0027 (8/2933) 0 * * Os_TE_505649 Chr2 4608140 4608139 + ORSgTEMT00500002 133 0.0040 (12/2980) 0 * * Os_TE_505637 Chr2 4595422 4595423 - MuDR4_OS 7610 0.0010 (3/2964) 0 * Os_TE_505636 Os_TE_505636 Chr2 4595415 4595414 + MuDR4_OS 7610 0.0010 (3/2961) 0 * Os_TE_505637 Os_TE_505630 Chr2 4592798 4592799 - STOWAWAY1_OS 149 0.0003 (1/2977) 0 * * Os_TE_505623 Chr2 4591122 4591121 + INDITTO 263 0.0020 (6/2968) 0 * * Os_TE_505616 Chr2 4589012 4588750 + INDITTO 263 0.1738 (413/2376) 1 Intact Os_TE_505615 Os_TE_505615 Chr2 4588750 4589012 - INDITTO 263 0.2701 (441/1633) 1 Intact Os_TE_505616 Os_TE_505605 Chr2 4585930 4585931 + RIREX_LTR 8828 0.0003 (1/2986) 0 * Os_TE_505604 Os_TE_505604 Chr2 4585926 4585925 - RIREX_LTR 8828 0.0003 (1/2990) 0 * Os_TE_505605 Os_TE_505601 Chr2 4584242 4584243 - HARB-1_OS 5166 0.0003 (1/2975) 0 * * Os_TE_505591 Chr2 4580279 4580278 - WUJI 257 0.0017 (5/2966) 0 * * Os_TE_505577 Chr2 4573815 4573816 + ORSgTETNOOT01834 251 0.0027 (8/2996) 0 * * Os_TE_505576 Chr2 4573702 4573703 - TOURIST-XI 219 0.1499 (442/2949) 0 * Os_TE_505575 Os_TE_505575 Chr2 4573699 4573698 + ORSgTETNOOT01834 251 0.1540 (455/2954) 0 * Os_TE_505576 Os_TE_505570 Chr2 4567458 4567459 + ORSgTERT00201441 428 0.0003 (1/2977) 0 * * Os_TE_505528 Chr2 4556767 4556768 - STOWAWAY51_OS 246 0.0003 (1/2975) 0 * * Os_TE_505504 Chr2 4548001 4548002 + RETRO1_LTR 8314 0.0742 (221/2980) 0 * Os_TE_505503 Os_TE_505503 Chr2 4547997 4547996 - RETRO1_LTR 8314 0.0722 (215/2978) 0 * Os_TE_505504 Os_TE_505463 Chr2 4536652 4536653 + RIRE2_LTR 11306 0.1392 (377/2709) 0 * Os_TE_505462 Os_TE_505462 Chr2 4536648 4536647 - RIRE2_LTR 11306 0.1429 (389/2722) 0 * Os_TE_505463 Os_TE_505461 Chr2 4536585 4536323 - INDITTO 263 0.1651 (451/2731) 1 Intact Os_TE_505460 Os_TE_505460 Chr2 4536323 4536585 + INDITTO 263 0.1676 (460/2745) 1 Intact Os_TE_505461 Os_TE_505457 Chr2 4535164 4535165 + AMYLTP 383 0.0019 (5/2592) 0 * Os_TE_505456 Os_TE_505456 Chr2 4535156 4535155 - AMYLTP 383 0.0018 (5/2760) 0 * Os_TE_505457 Os_TE_505453 Chr2 4535106 4534909 - ORSgTEMT01601311 200 0.7845 (1212/1545) 1 Intact * Os_TE_505435 Chr2 4530088 4530087 + ORSiTERTOOT00074 4935 0.0003 (1/2993) 0 * * Os_TE_505434 Chr2 4529249 4529250 - INDITTO 263 0.0335 (100/2989) 0 * Os_TE_505433 Os_TE_505433 Chr2 4529247 4529246 + INDITTO 263 0.0342 (102/2986) 0 * Os_TE_505434 Os_TE_505422 Chr2 4526152 4526151 - HELITRON2_OS 15167 0.0003 (1/2997) 0 * * Os_TE_505302 Chr2 4486711 4486934 - ORSgTEMT02400246 177 0.1518 (454/2990) 1 Intact * Os_TE_505301 Chr2 4486592 4486593 + ORSiTERTOOT00296 5553 0.0070 (21/2986) 0 * Os_TE_505300 Os_TE_505300 Chr2 4486588 4486587 - SC-3_LTR 5748 0.0070 (21/2991) 0 * Os_TE_505301 Os_TE_505289 Chr2 4479298 4479297 + MERMITEA 1710 0.0003 (1/2982) 0 * * Os_TE_505216 Chr2 4444650 4444649 - SC-8_LTR 4951 0.0003 (1/2980) 0 * * Os_TE_505182 Chr2 4431316 4431317 + ORSgTETNOOT01834 251 0.2961 (260/878) 0 * Os_TE_505181 Os_TE_505181 Chr2 4431314 4431313 + ORSgTETNOOT01834 251 0.1149 (331/2882) 0 * Os_TE_505182 Os_TE_505180 Chr2 4431284 4426969 + DS-RICE3N 525 0.5973 (534/894) 1 Intact * Os_TE_505175 Chr2 4425575 4425574 - COPI2_LTR 4733 0.0003 (1/2916) 0 * * Os_TE_505113 Chr2 4395909 4395910 + RIRE2_LTR 11306 0.0027 (8/2932) 0 * * Os_TE_505103 Chr2 4394178 4394179 + COPIA2-LTR_OS 6433 0.0003 (1/2918) 0 * * Os_TE_505101 Chr2 4393753 4393752 + CACTA-B 1103 0.1062 (315/2965) 0 * Os_TE_505100 Os_TE_505100 Chr2 4393752 4393753 - CACTA-H 1152 0.1172 (343/2927) 0 * Os_TE_505101 Os_TE_505099 Chr2 4393674 4393673 - CPSC4A_LTR 5182 0.6857 (2051/2991) 0 * * Os_TE_505084 Chr2 4389254 4389255 - STOWAWAY51_OS 246 0.0003 (1/2976) 0 * * Os_TE_505076 Chr2 4387729 4387730 + ORSiTETN00100011 676 0.0301 (90/2990) 0 * Os_TE_505075 Os_TE_505075 Chr2 4387721 4387720 + DS-RICE4N 715 0.0301 (90/2989) 0 * Os_TE_505076 Os_TE_505043 Chr2 4372374 4372375 - ORSgTETN00200001 10994 0.0004 (1/2830) 0 * Os_TE_505042 Os_TE_505042 Chr2 4372372 4372371 + SPMLIKE 10989 0.0003 (1/2985) 0 * Os_TE_505043 Os_TE_505041 Chr2 4371614 4371615 - MERMITEA 1710 0.0023 (7/2991) 0 * Os_TE_505040 Os_TE_505040 Chr2 4371605 4371604 - MERMITEA 1710 0.0020 (6/2989) 0 * Os_TE_505041 Os_TE_505011 Chr2 4364921 4364920 - ORSgTEMT02400246 177 0.0007 (2/2983) 0 * * Os_TE_505003 Chr2 4363517 4363518 + INDITTO 263 0.0020 (6/2989) 0 * Os_TE_505002 Os_TE_505002 Chr2 4363515 4363514 - INDITTO 263 0.0020 (6/2990) 0 * Os_TE_505003 Os_TE_505001 Chr2 4363384 4363383 - ORSgTEMT00900892 250 0.0013 (4/2989) 0 * Os_TE_505000 Os_TE_505000 Chr2 4363382 4363383 + ORSgTEMT00900266 245 0.0017 (5/2987) 0 * Os_TE_505001 Os_TE_504984 Chr2 4358816 4358817 + COPIA2-LTR_OS 6433 0.0007 (2/2824) 0 * * Os_TE_504964 Chr2 4352474 4352473 + COPI2_LTR 4733 0.0003 (1/2995) 0 * * Os_TE_504953 Chr2 4346931 4346932 + OSMUD1 5028 0.0007 (2/2963) 0 * Os_TE_504952 Os_TE_504952 Chr2 4346923 4346922 + OSMUD1 5028 0.0007 (2/2963) 0 * Os_TE_504953 Os_TE_504949 Chr2 4346020 4346019 - ORSgTEMT01400012 212 0.2344 (300/1280) 0 * * Os_TE_504907 Chr2 4324400 4324401 - MERMITED 1572 0.0007 (2/2983) 0 * Os_TE_504906 Os_TE_504906 Chr2 4324394 4324393 + MERMITEH 1307 0.0007 (2/2984) 0 * Os_TE_504907 Os_TE_504900 Chr2 4320425 4320424 - ECR 394 0.0014 (4/2912) 0 * * Os_TE_504886 Chr2 4317726 4317725 + STOWAWAY21_OS 243 0.0018 (5/2822) 0 * * Os_TE_504861 Chr2 4307924 4307923 + TRUNCATOR 2918 0.0003 (1/2996) 0 * * Os_TE_504855 Chr2 4303333 4303334 + ORSiTERTOOT00381 4988 0.0023 (7/2998) 0 * Os_TE_504854 Os_TE_504854 Chr2 4303329 4303328 - SC-8_LTR 4951 0.0020 (6/2997) 0 * Os_TE_504855 Os_TE_504834 Chr2 4298196 4298197 + SC-8_LTR 4951 0.0003 (1/2987) 0 * Os_TE_504833 Os_TE_504833 Chr2 4298192 4298191 - SC-8_LTR 4951 0.0003 (1/2980) 0 * Os_TE_504834 Os_TE_504814 Chr2 4290588 4290349 + STOWAWAY21_OS 243 0.4678 (1380/2950) 1 Intact Os_TE_504812 Os_TE_504812 Chr2 4290347 4290559 + ORSgTEMT01601122 212 0.4586 (1342/2926) 1 Intact Os_TE_504814 Os_TE_504806 Chr2 4288788 4288789 - ORSgTETN00200001 10994 0.0003 (1/2972) 0 * * Os_TE_504802 Chr2 4286479 4286480 + TRUNCATOR 2918 0.0003 (1/2963) 0 * * Os_TE_504742 Chr2 4261056 4261057 + Cassandra_OS-LTR 764 0.0502 (150/2988) 0 * Os_TE_504741 Os_TE_504741 Chr2 4261052 4261051 - Cassandra_OS-LTR 764 0.0509 (152/2988) 0 * Os_TE_504742 Os_TE_504709 Chr2 4248446 4248445 + STOWAWAY51_OS 246 0.0003 (1/2992) 0 * Os_TE_504708 Os_TE_504708 Chr2 4248440 4248441 - STOWAWAY51_OS 246 0.0003 (1/2990) 0 * Os_TE_504709 Os_TE_504676 Chr2 4242263 4242157 - SINE6_OS 119 0.8786 (2620/2982) 1 Intact Os_TE_504675 Os_TE_504675 Chr2 4242144 4242265 + SINE1R5_OS 121 0.8791 (2618/2978) 1 Intact Os_TE_504676 Os_TE_504668 Chr2 4239429 4239430 - RETRO2_LTR 12874 0.4417 (1304/2952) 0 * Os_TE_504667 Os_TE_504667 Chr2 4239426 4239425 + RETRO2_LTR 12874 0.4423 (1314/2971) 0 * Os_TE_504668 Os_TE_504664 Chr2 4238454 4238453 - EnSpm-13_OS 11171 0.0007 (2/2983) 0 * * Os_TE_504662 Chr2 4237721 4237722 - COPIA2-LTR_OS 6433 0.0010 (3/2995) 0 * Os_TE_504661 Os_TE_504661 Chr2 4237717 4237716 + COPIA2-LTR_OS 6433 0.0010 (3/2994) 0 * Os_TE_504662 Os_TE_504584 Chr2 4212468 4212469 - INDITTO 263 0.0529 (158/2986) 0 * * Os_TE_504579 Chr2 4211725 4211726 + ORSgTETNOOT00908 242 0.4112 (1222/2972) 0 * * Os_TE_504551 Chr2 4194016 4194015 + STOWAWAY51_OS 246 0.0027 (8/2996) 0 * Os_TE_504550 Os_TE_504550 Chr2 4194010 4194011 - STOWAWAY51_OS 246 0.0027 (8/2995) 0 * Os_TE_504551 Os_TE_504528 Chr2 4186002 4186003 - ORSgTEMT00501384 148 0.0013 (4/2995) 0 * * Os_TE_504495 Chr2 4176614 4176615 - OSTE7 837 0.0130 (39/2989) 0 * * Os_TE_504464 Chr2 4164290 4164291 + RETRO1_LTR 8314 0.0003 (1/2978) 0 * * Os_TE_504439 Chr2 4155912 4161446 + ORSgTERTOOT00009 12852 0.7576 (2150/2838) 1 Intact * Os_TE_504428 Chr2 4155004 4155005 - INDITTO 263 0.0621 (185/2980) 0 * Os_TE_504427 Os_TE_504427 Chr2 4155002 4155001 - ORSgTETNOOT02417 265 0.0634 (189/2981) 0 * Os_TE_504428 Os_TE_504373 Chr2 4130540 4130541 - SC-8_LTR 4951 0.0003 (1/2997) 0 * Os_TE_504372 Os_TE_504372 Chr2 4130536 4130535 + SC-8_LTR 4951 0.0003 (1/2995) 0 * Os_TE_504373 Os_TE_504360 Chr2 4120184 4120185 + TWIFB1 3737 0.0003 (1/2862) 0 * * Os_TE_504344 Chr2 4115946 4115947 + AMYLTP 383 0.0016 (1/639) -1 * * Os_TE_504320 Chr2 4105730 4105731 - INDITTO 263 0.1941 (577/2973) 0 * Os_TE_504319 Os_TE_504319 Chr2 4105728 4105727 + INDITTO 263 0.1788 (525/2936) 0 * Os_TE_504320 Os_TE_504301 Chr2 4093225 4093224 - TRUNCATOR 2918 0.1664 (498/2992) 0 * Os_TE_504300 Os_TE_504300 Chr2 4093224 4093225 + TRUNCATOR 2918 0.1687 (505/2993) 0 * Os_TE_504301 Os_TE_504281 Chr2 4082915 4082916 - AMYLTP 383 0.0031 (5/1590) -1 * Os_TE_504280 Os_TE_504280 Chr2 4082907 4082906 + AMYLTP 383 0.0031 (5/1604) -1 * Os_TE_504281 Os_TE_504270 Chr2 4082066 4082065 - AMYLTP 383 0.0216 (64/2962) 0 * * Os_TE_504258 Chr2 4072909 4072908 + ORSgTETNOOT00908 242 0.0143 (42/2936) 0 * * Os_TE_504251 Chr2 4071311 4071310 + F770 284 0.0020 (6/2984) 0 * * Os_TE_504250 Chr2 4070675 4070674 - STOWAWAY44_OS 240 0.0135 (40/2956) 0 * * Os_TE_504246 Chr2 4070473 4070474 - COPI2_LTR 4733 0.0080 (24/2991) 0 * Os_TE_504245 Os_TE_504245 Chr2 4070469 4070468 + COPI2_LTR 4733 0.0070 (21/2991) 0 * Os_TE_504246 Os_TE_504234 Chr2 4064328 4064329 - TRUNCATOR 2918 0.0004 (1/2813) 0 * * Os_TE_504233 Chr2 4064286 4064287 - RIREX_LTR 8828 0.1032 (295/2859) 0 * Os_TE_504232 Os_TE_504232 Chr2 4064282 4064281 + RIREX_LTR 8828 0.1082 (305/2820) 0 * Os_TE_504233 Os_TE_504190 Chr2 4048954 4048953 - SC-8_LTR 4951 0.0017 (5/2954) 0 * * Os_TE_504181 Chr2 4043148 4043147 + COPI2_LTR 4733 0.0007 (2/2943) 0 * * Os_TE_504177 Chr2 4042788 4042787 - STOWAWAY1_OS 149 0.0024 (7/2898) 0 * * Os_TE_504166 Chr2 4029626 4029014 + DS-RICE2N 613 0.1308 (388/2966) 1 Intact Os_TE_504165 Os_TE_504165 Chr2 4029014 4029626 - DS-RICE2N 613 0.1293 (383/2962) 1 Intact Os_TE_504166 Os_TE_504158 Chr2 4024268 4024267 + ORSgTEMT01701265 147 0.8724 (2598/2978) 0 * * Os_TE_504116 Chr2 3995108 3995107 - OSTE24 683 0.0124 (37/2981) 0 * * Os_TE_504110 Chr2 3991972 3991973 + KIDDOB 280 0.2532 (757/2990) 0 * Os_TE_504109 Os_TE_504109 Chr2 3991970 3991969 - CENTRE 280 0.2544 (762/2995) 0 * Os_TE_504110 Os_TE_504078 Chr2 3981897 3981896 - CACTA-Q 2268 0.0014 (4/2939) 0 * * Os_TE_504036 Chr2 3968104 3968105 - TELIA 141 0.0003 (1/2990) 0 * Os_TE_504035 Os_TE_504035 Chr2 3968096 3968095 + TELIA 141 0.0003 (1/2989) 0 * Os_TE_504036 Os_TE_503954 Chr2 3953781 3953782 + SC-8_LTR 4951 0.0013 (4/2992) 0 * Os_TE_503953 Os_TE_503953 Chr2 3953777 3953776 - SC-8_LTR 4951 0.0013 (4/2995) 0 * Os_TE_503954 Os_TE_503901 Chr2 3909765 3909766 + RIREX_LTR 8828 0.0024 (7/2958) 0 * Os_TE_503900 Os_TE_503900 Chr2 3909761 3909760 - RIREX_LTR 8828 0.0024 (7/2960) 0 * Os_TE_503901 Os_TE_503893 Chr2 3897342 3908645 - RIRE2_LTR 11306 0.0871 (259/2975) 1 Intact * Os_TE_503891 Chr2 3896995 3896994 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * * Os_TE_503844 Chr2 3874798 3874799 + COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_503843 Os_TE_503843 Chr2 3874794 3874793 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_503844 Os_TE_503827 Chr2 3866843 3866844 + STOWAWAY9_OS 235 0.6844 (2010/2937) 0.86 * * Os_TE_503821 Chr2 3860317 3860316 + SC-8_LTR 4951 0.0003 (1/2966) 0 * * Os_TE_503796 Chr2 3851804 3851803 - ORSiTETNOOT00134 607 0.0447 (126/2818) 0 * * Os_TE_503776 Chr2 3837987 3837988 + ORSiTERTOOT00074 4935 0.0003 (1/2973) 0 * * Os_TE_503727 Chr2 3797110 3797109 + ORSgTEMT01400031 216 0.0030 (9/2980) 0 * * Os_TE_503705 Chr2 3787425 3787424 - SZ-67LTR 1540 0.8321 (2434/2925) 0 * * Os_TE_503685 Chr2 3781372 3781373 - SC-3_LTR 5748 0.0003 (1/2985) 0 * * Os_TE_503668 Chr2 3777150 3777149 + ORSgTEMT00600360 369 0.0024 (7/2939) 0 * Os_TE_503667 Os_TE_503667 Chr2 3777147 3777148 - CASTAWAY 364 0.0021 (6/2894) 0 * Os_TE_503668 Os_TE_503666 Chr2 3776914 3776915 - ORSgTEMT02400246 177 0.0179 (51/2848) 0 * * Os_TE_503661 Chr2 3776329 3776330 + ORSgTEMT01900028 316 0.0021 (6/2925) 0 * * Os_TE_503641 Chr2 3761571 3761572 + CPSC2_LTR 5202 0.0007 (2/2985) 0 * * Os_TE_503637 Chr2 3760854 3760853 + TWIF 586 0.0003 (1/2952) 0 * * Os_TE_503636 Chr2 3760827 3760828 - MPING 430 0.0003 (1/2982) 0 * * Os_TE_503627 Chr2 3759314 3759315 + ORSgTEMT00901202 248 0.0020 (6/2978) 0 * * Os_TE_503621 Chr2 3757654 3757653 + ORSgTEMT05000092 279 0.0013 (4/2964) 0 * * Os_TE_503612 Chr2 3756615 3756614 - ORSgTEMT01702216 170 0.0020 (6/2966) 0 * * Os_TE_503531 Chr2 3707774 3707775 - SC-3_LTR 5748 0.3885 (1160/2986) 0 * * Os_TE_503527 Chr2 3707282 3707283 - SC-8_LTR 4951 0.0024 (7/2957) 0 * Os_TE_503526 Os_TE_503526 Chr2 3707278 3707277 + SC-8_LTR 4951 0.0027 (8/2953) 0 * Os_TE_503527 Os_TE_503517 Chr2 3701824 3701823 - AMYLTP 383 0.0322 (96/2983) 0 * * Os_TE_503502 Chr2 3692377 3692378 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * * Os_TE_503479 Chr2 3684657 3684656 - AMYLTP 383 0.0014 (4/2912) 0 * * Os_TE_503380 Chr2 3623096 3623097 + MPING 430 0.0003 (1/2984) 0 * Os_TE_503379 Os_TE_503379 Chr2 3623094 3623093 - MPING 430 0.0003 (1/2988) 0 * Os_TE_503380 Os_TE_503284 Chr2 3597850 3597851 + RETROSAT4_LTR 13504 0.0003 (1/2983) 0 * * Os_TE_503283 Chr2 3597541 3597542 - ORSiTETNOOT00156 3648 0.0120 (31/2588) 0 * Os_TE_503282 Os_TE_503282 Chr2 3597534 3597533 + TWIFBIG 3567 0.0157 (44/2807) 0 * Os_TE_503283 Os_TE_503275 Chr2 3593902 3593901 - STOWAWAY51_OS 246 0.0007 (2/2994) 0 * Os_TE_503274 Os_TE_503274 Chr2 3593899 3593900 - STOWAWAY44_OS 240 0.0007 (2/2989) 0 * Os_TE_503275 Os_TE_503270 Chr2 3593502 3593501 - TELIA 141 0.0003 (1/2894) 0 * * Os_TE_503238 Chr2 3587135 3587134 - ORSgTEMT01600747 238 0.0759 (221/2912) 0 * Os_TE_503237 Os_TE_503237 Chr2 3587120 3587121 + ORSgTEMT01602119 229 0.0761 (221/2905) 0 * Os_TE_503238 Os_TE_503235 Chr2 3587014 3587015 + STOWAWAY49_OS 241 0.0546 (152/2785) 0 * * Os_TE_503229 Chr2 3586613 3586614 - MUDRN3_OS 903 0.0273 (81/2968) 0 * * Os_TE_503222 Chr2 3584691 3584692 + ORSgTEMT04800085 366 0.0831 (246/2959) 0 * Os_TE_503221 Os_TE_503221 Chr2 3584689 3584688 + ORSgTEMT04800018 359 0.0860 (255/2965) 0 * Os_TE_503222 Os_TE_503208 Chr2 3582368 3582369 - HARB-1_OS 5166 0.0013 (4/2989) 0 * Os_TE_503207 Os_TE_503207 Chr2 3582366 3582365 + HARB-1_OS 5166 0.0014 (4/2888) 0 * Os_TE_503208 Os_TE_503206 Chr2 3582256 3582255 + ORSgTEMT01700200 156 0.0842 (252/2992) 0 * * Os_TE_503167 Chr2 3576763 3576764 + MERMITEA 1710 0.0853 (253/2967) 0 * Os_TE_503166 Os_TE_503166 Chr2 3576755 3576754 + MERMITEA 1710 0.0829 (246/2966) 0 * Os_TE_503167 Os_TE_503149 Chr2 3573164 3573538 + ORSgTEMT00300064 397 0.8958 (2666/2976) 1 Intact * Os_TE_503146 Chr2 3571856 3571857 + ORSgTEMT00900258 259 0.1095 (321/2931) 0 * * Os_TE_503139 Chr2 3569213 3568876 - OLO24 345 0.8999 (2671/2968) 1 Intact * Os_TE_503129 Chr2 3567111 3567110 - COPI2_LTR 4733 0.0004 (1/2685) 0 * * Os_TE_503071 Chr2 3546571 3546572 - RIREX_LTR 8828 0.0003 (1/2974) 0 * Os_TE_503070 Os_TE_503070 Chr2 3546567 3546566 + RIREX_LTR 8828 0.0003 (1/2974) 0 * Os_TE_503071 Os_TE_502991 Chr2 3533554 3533553 - OSTE17 734 0.0619 (182/2942) 0 * * Os_TE_502965 Chr2 3527179 3527180 + COPI2_LTR 4733 0.0003 (1/2907) 0 * * Os_TE_502963 Chr2 3527015 3527016 + COPI2_LTR 4733 0.0003 (1/2944) 0 * Os_TE_502962 Os_TE_502962 Chr2 3527011 3527010 - COPI2_LTR 4733 0.0003 (1/2943) 0 * Os_TE_502963 Os_TE_502950 Chr2 3523052 3523051 - TRUNCATOR 2918 0.0591 (176/2979) 0 * * Os_TE_502949 Chr2 3523051 3523052 + TRUNCATOR 2918 0.0627 (187/2984) 0 * Os_TE_502948 Os_TE_502948 Chr2 3523045 3523044 - TRUNCATOR 2918 0.0591 (176/2977) 0 * Os_TE_502949 Os_TE_502896 Chr2 3504594 3504595 - SC-3_LTR 5748 0.0003 (1/2992) 0 * Os_TE_502895 Os_TE_502895 Chr2 3504590 3504589 + ORSiTERTOOT00296 5553 0.0003 (1/2993) 0 * Os_TE_502896 Os_TE_502889 Chr2 3502594 3502593 - MPING 430 0.0254 (76/2987) 0 * * Os_TE_502862 Chr2 3489896 3489897 - SC-8_LTR 4951 0.0007 (2/2990) 0 * Os_TE_502861 Os_TE_502861 Chr2 3489892 3489891 + SC-8_LTR 4951 0.0007 (2/2993) 0 * Os_TE_502862 Os_TE_502847 Chr2 3485641 3485640 + ORSgTEMT00100818 160 0.0010 (3/2991) 0 * * Os_TE_502845 Chr2 3485060 3485059 - STOWAWAY51_OS 246 0.0003 (1/2982) 0 * Os_TE_502844 Os_TE_502844 Chr2 3485057 3485058 - STOWAWAY51_OS 246 0.0003 (1/2985) 0 * Os_TE_502845 Os_TE_502832 Chr2 3482898 3482897 + MPING 430 0.0003 (1/2979) 0 * * Os_TE_502831 Chr2 3482545 3482546 + HELIA 293 0.0017 (5/2982) 0 * * Os_TE_502827 Chr2 3479805 3479806 + COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_502826 Os_TE_502826 Chr2 3479801 3479800 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_502827 Os_TE_502824 Chr2 3479697 3479696 + STOWAWAY51_OS 246 0.0003 (1/2994) 0 * Os_TE_502823 Os_TE_502823 Chr2 3479691 3479692 - STOWAWAY51_OS 246 0.0007 (2/2997) 0 * Os_TE_502824 Os_TE_502807 Chr2 3471878 3471879 + COPI2_LTR 4733 0.0003 (1/2993) 0 * Os_TE_502806 Os_TE_502806 Chr2 3471874 3471873 - COPI2_LTR 4733 0.0003 (1/2989) 0 * Os_TE_502807 Os_TE_502786 Chr2 3462213 3462212 - OSTE24 683 0.7285 (2020/2773) 0 * * Os_TE_502781 Chr2 3459025 3459024 + ORSgTEMT01701997 154 0.0049 (4/821) 0 * * Os_TE_502780 Chr2 3458708 3458709 + OSTONOR1_LTR 6440 0.7316 (2014/2753) 0 * Os_TE_502779 Os_TE_502779 Chr2 3458704 3458703 - ORSiTERT00100062 5674 0.7496 (2206/2943) 0 * Os_TE_502780 Os_TE_502777 Chr2 3457311 3457312 + COPIA2-LTR_OS 6433 0.0003 (1/2986) 0 * Os_TE_502776 Os_TE_502776 Chr2 3457307 3457306 - COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_502777 Os_TE_502763 Chr2 3440789 3440790 - SC-3_LTR 5748 0.0004 (1/2477) 0 * Os_TE_502762 Os_TE_502762 Chr2 3440785 3440784 + ORSiTERTOOT00296 5553 0.0004 (1/2467) 0 * Os_TE_502763 Os_TE_502744 Chr2 3425471 3425470 - SZ-22_LTR 4403 0.0012 (1/810) 0 * * Os_TE_502686 Chr2 3398930 3393866 - COPIA2-LTR_OS 6433 0.6820 (549/805) 1 Intact Os_TE_502683 Os_TE_502683 Chr2 3393866 3398930 + COPIA2-LTR_OS 6433 0.6619 (511/772) 1 Intact Os_TE_502686 Os_TE_502670 Chr2 3389959 3389728 + STOWAWAY51_OS 246 0.7009 (757/1080) 0.5 Intact * Os_TE_502662 Chr2 3386595 3386596 - ORSgTEMT01602413 239 0.7462 (2158/2892) 0 * * Os_TE_502652 Chr2 3377270 3377271 - ORSiTERTOOT00035 413 0.0003 (1/2971) 0 * * Os_TE_502644 Chr2 3375102 3375103 - SC-8_LTR 4951 0.0003 (1/2969) 0 * Os_TE_502643 Os_TE_502643 Chr2 3375098 3375097 + SC-8_LTR 4951 0.0003 (1/2960) 0 * Os_TE_502644 Os_TE_502621 Chr2 3355387 3355388 + ORSgTETNOOT01668 244 0.0013 (4/2967) 0 * * Os_TE_502618 Chr2 3353160 3353161 + MPING 430 0.0013 (4/2996) 0 * Os_TE_502617 Os_TE_502617 Chr2 3353158 3353157 - MPING 430 0.0013 (4/2995) 0 * Os_TE_502618 Os_TE_502615 Chr2 3349786 3349787 - F770 284 0.7951 (2367/2977) 0 * Os_TE_502614 Os_TE_502614 Chr2 3349784 3349783 + F770 284 0.7948 (2367/2978) 0 * Os_TE_502615 Os_TE_502613 Chr2 3348889 3348890 + COPIA2-LTR_OS 6433 0.0015 (1/668) 0 * Os_TE_502612 Os_TE_502612 Chr2 3348885 3348884 - COPIA2-LTR_OS 6433 0.0003 (1/2963) 0 * Os_TE_502613 Os_TE_502611 Chr2 3348880 3348881 - ORSgTEMT01601432 239 0.7897 (2325/2944) 0 * * Os_TE_502561 Chr2 3323194 3323195 + ORSgTEMT01602181 239 0.0241 (72/2987) 0 * * Os_TE_502559 Chr2 3323141 3323142 + ORSiTERTOOT00350 5275 0.0027 (8/2969) 0 * * Os_TE_502538 Chr2 3321398 3321397 + RETROSAT4_LTR 13504 0.0509 (140/2753) 0 * * Os_TE_502502 Chr2 3305976 3305975 - TEMPINDAS 4259 0.0074 (22/2993) 0 * * Os_TE_502499 Chr2 3302237 3302236 + ORSgTERT00100654 265 0.0007 (2/2992) 0 * * Os_TE_502498 Chr2 3301034 3301035 + SETARIA2 1142 0.0017 (5/2960) 0 * Os_TE_502497 Os_TE_502497 Chr2 3301031 3301030 + SETARIA2 1142 0.0013 (4/2974) 0 * Os_TE_502498 Os_TE_502489 Chr2 3295909 3295908 - RIREX_LTR 8828 0.0258 (77/2987) 0 * * Os_TE_502488 Chr2 3295224 3295223 + TRUNCATOR 2918 0.0003 (1/2991) 0 * * Os_TE_502457 Chr2 3281157 3281156 - STOWAWAY51_OS 246 0.0124 (37/2995) 0 * Os_TE_502456 Os_TE_502456 Chr2 3281151 3281152 + STOWAWAY51_OS 246 0.0127 (38/2996) 0 * Os_TE_502457 Os_TE_502444 Chr2 3276790 3276789 + CACTA-I 1124 0.0304 (88/2896) 0 * Os_TE_502443 Os_TE_502443 Chr2 3276789 3276790 + ORSgTETN00200005 1121 0.0314 (91/2896) 0 * Os_TE_502444 Os_TE_502442 Chr2 3276263 3276262 + ORSgTEMT01602051 240 0.0307 (90/2936) 0 * Os_TE_502441 Os_TE_502441 Chr2 3276260 3276261 - TREP215 239 0.0316 (93/2940) 0 * Os_TE_502442 Os_TE_502422 Chr2 3271284 3270472 + ORSiTERTOOT00226 792 0.7984 (2384/2986) 1 Intact * Os_TE_502411 Chr2 3270135 3270136 - MDR2 6967 0.0321 (95/2964) 0 * Os_TE_502410 Os_TE_502410 Chr2 3270127 3270126 + MDR2 6967 0.0341 (101/2966) 0 * Os_TE_502411 Os_TE_502409 Chr2 3268993 3268994 - MPING 430 0.0014 (4/2831) 0 * Os_TE_502408 Os_TE_502408 Chr2 3268991 3268990 + MPING 430 0.0011 (3/2844) 0 * Os_TE_502409 Os_TE_502400 Chr2 3267261 3267260 - SZ-35LTR 3853 0.0028 (8/2845) 0 * * Os_TE_502385 Chr2 3252874 3252875 - COPIA2-LTR_OS 6433 0.0030 (9/2994) 0 * Os_TE_502384 Os_TE_502384 Chr2 3252870 3252869 + COPIA2-LTR_OS 6433 0.0027 (8/2992) 0 * Os_TE_502385 Os_TE_502383 Chr2 3250849 3250848 + RIREX_LTR 8828 0.0003 (1/2978) 0 * * Os_TE_502382 Chr2 3250815 3250816 + ORSiTERTOOT00028 8600 0.0004 (1/2849) 0 * Os_TE_502381 Os_TE_502381 Chr2 3250811 3250810 - TRUNCATOR2_LTR 2904 0.0003 (1/2968) -1 * Os_TE_502382 Os_TE_502380 Chr2 3250780 3250781 - RETRO1_LTR 8314 0.6806 (2026/2977) 0 * Os_TE_502379 Os_TE_502379 Chr2 3250776 3250775 + RETRO1_LTR 8314 0.6787 (2024/2982) 0 * Os_TE_502380 Os_TE_502374 Chr2 3244078 3244077 + STOWAWAY17_OS 259 0.0003 (1/2969) 0 * * Os_TE_502348 Chr2 3229546 3229784 - ORSgTEMT01601432 239 0.0472 (141/2988) 1 Intact * Os_TE_502325 Chr2 3215283 3215284 + SC-8_LTR 4951 0.0003 (1/2998) 0 * Os_TE_502324 Os_TE_502324 Chr2 3215279 3215278 - SC-8_LTR 4951 0.0003 (1/2999) 0 * Os_TE_502325 Os_TE_502292 Chr2 3202959 3202960 - TESS 244 0.0164 (49/2993) 0 * Os_TE_502291 Os_TE_502291 Chr2 3202952 3202951 + TESS 244 0.0164 (49/2994) 0 * Os_TE_502292 Os_TE_502290 Chr2 3199074 3199075 + SC-3_LTR 5748 0.0017 (5/2990) 0 * Os_TE_502289 Os_TE_502289 Chr2 3199070 3199069 - SC-3_LTR 5748 0.0017 (5/2992) 0 * Os_TE_502290 Os_TE_502287 Chr2 3196115 3196116 + OLO24 345 0.0157 (47/2986) 0 * * Os_TE_502284 Chr2 3189987 3189988 + DS-RICE4N 715 0.0003 (1/2943) 0 * * Os_TE_502270 Chr2 3181918 3181919 - SC-3_LTR 5748 0.0003 (1/2993) 0 * Os_TE_502269 Os_TE_502269 Chr2 3181914 3181913 + ORSiTERTOOT00296 5553 0.0003 (1/2992) 0 * Os_TE_502270 Os_TE_502238 Chr2 3175068 3174847 - ORSgTEMT02400092 225 0.1750 (525/3000) 1 Intact Os_TE_502237 Os_TE_502237 Chr2 3174844 3175061 - ORSgTEMT02400246 177 0.1735 (520/2997) 1 Intact Os_TE_502238 Os_TE_502236 Chr2 3174352 3174351 + ORSgTEMT01602637 232 0.0324 (97/2997) 0 * * Os_TE_502217 Chr2 3161910 3161911 - RIREX_LTR 8828 0.0013 (4/2998) 0 * Os_TE_502216 Os_TE_502216 Chr2 3161906 3161905 + RIREX_LTR 8828 0.0013 (4/2999) 0 * Os_TE_502217 Os_TE_502213 Chr2 3160026 3160027 + ORSgTEMT00600376 329 0.1839 (551/2996) 0 * Os_TE_502212 Os_TE_502212 Chr2 3160022 3160021 + ORSgTEMT00600307 352 0.1862 (558/2997) 0 * Os_TE_502213 Os_TE_502198 Chr2 3148521 3148522 + ORSiTERTOOT00296 5553 0.0003 (1/2987) 0 * Os_TE_502197 Os_TE_502197 Chr2 3148517 3148516 - SC-3_LTR 5748 0.0003 (1/2991) 0 * Os_TE_502198 Os_TE_502179 Chr2 3141873 3141872 - ORSgTEMT01602467 227 0.0753 (225/2990) 0 * * Os_TE_502169 Chr2 3128877 3128878 + ORSiTERTOOT00296 5553 0.0003 (1/2973) 0 * * Os_TE_502166 Chr2 3126668 3126669 + ORSiTERTOOT00402 2660 0.0003 (1/2972) 0 * Os_TE_502165 Os_TE_502165 Chr2 3126664 3126663 - ORSiTERTOOT00402 2660 0.0003 (1/2975) 0 * Os_TE_502166 Os_TE_502148 Chr2 3119474 3114243 + OSR3_LTR 5201 0.5195 (1372/2641) 1 Intact Os_TE_502147 Os_TE_502147 Chr2 3114228 3119415 - SC-7_LTR 4431 0.5213 (1381/2649) 1 Intact Os_TE_502148 Os_TE_502145 Chr2 3113372 3113225 - ORSgTEMT00501204 149 0.7809 (2060/2638) 1 Intact * Os_TE_502128 Chr2 3102589 3102588 - TYPEH 309 0.0018 (5/2798) 0 * Os_TE_502127 Os_TE_502127 Chr2 3102588 3102589 + ORSgTEMT01900030 288 0.0018 (5/2804) 0 * Os_TE_502128 Os_TE_502118 Chr2 3099831 3099832 + RETROSAT4_LTR 13504 0.0828 (220/2658) 0 * * Os_TE_502116 Chr2 3099583 3099584 + NDNA1TNA_OS 334 0.0835 (250/2994) 0 * * Os_TE_502108 Chr2 3095686 3095687 - NDNA1TNA_OS 334 0.0383 (114/2980) 0 * Os_TE_502107 Os_TE_502107 Chr2 3095684 3095683 + NDNA1TNA_OS 334 0.0402 (120/2983) 0 * Os_TE_502108 Os_TE_502104 Chr2 3092857 3092856 + COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * * Os_TE_502098 Chr2 3091212 3091213 + ORSiTEMT03300001 145 0.0017 (5/2967) 0 * * Os_TE_502097 Chr2 3091155 3091156 - RETRO1_LTR 8314 0.0288 (57/1976) 0 * * Os_TE_502092 Chr2 3089825 3089824 + ORSgTEMT00901844 250 0.3886 (1156/2975) 0 * Os_TE_502091 Os_TE_502091 Chr2 3089821 3089822 - ORSgTEMT00900005 240 0.3836 (1138/2967) 0 * Os_TE_502092 Os_TE_502086 Chr2 3087910 3087911 - STOWAWAY51_OS 246 0.0003 (1/2941) 0 * * Os_TE_502064 Chr2 3077997 3077998 - RIREX_LTR 8828 0.0017 (3/1812) 0 * Os_TE_502063 Os_TE_502063 Chr2 3077993 3077992 + RIREX_LTR 8828 0.0017 (3/1816) 0 * Os_TE_502064 Os_TE_502057 Chr2 3076843 3076844 - HARB-1_OS 5166 0.0006 (1/1817) 0 * Os_TE_502056 Os_TE_502056 Chr2 3076841 3076840 - MPING 430 0.0011 (2/1817) 0 * Os_TE_502057 Os_TE_502035 Chr2 3063801 3063800 + ORSgTEMT00501821 144 0.0017 (5/2953) 0 * * Os_TE_502031 Chr2 3062954 3062953 + ORSgTEMT01701324 144 0.4249 (1247/2935) 0 * * Os_TE_502030 Chr2 3062951 3062952 - ORSgTEMT01700029 143 0.4261 (1242/2915) 0 * Os_TE_502029 Os_TE_502029 Chr2 3062948 3062947 + ORSgTEMT01700610 148 0.4257 (1246/2927) 0 * Os_TE_502030 Os_TE_502005 Chr2 3055598 3055731 - STOWAWAY50_OS 174 0.5474 (1633/2983) 1 Intact * Os_TE_502003 Chr2 3055362 3055361 + CRATA 4786 0.2032 (602/2962) 0 * * Os_TE_502001 Chr2 3052527 3052526 + OSTE33 1012 0.0346 (96/2776) 0 * * Os_TE_501998 Chr2 3051935 3051936 + ORSgTETNOOT01275 140 0.4244 (1202/2832) 0 * Os_TE_501997 Os_TE_501997 Chr2 3051933 3051932 - ORSgTETNOOT00118 134 0.4538 (1337/2946) 0 * Os_TE_501998 Os_TE_501985 Chr2 3041889 3041890 - ORSgTEMT00901557 189 0.0007 (2/2880) 0 * * Os_TE_501981 Chr2 3040013 3040012 - ORSgTEMT01600523 230 0.4456 (1307/2933) 0 * * Os_TE_501978 Chr2 3037198 3037197 - COWARD 200 0.0017 (5/2996) 0 * * Os_TE_501975 Chr2 3036071 3035929 + ORSgTEMT00500560 148 0.6647 (1965/2956) 1 Intact Os_TE_501973 Os_TE_501973 Chr2 3035921 3036069 + ORSgTEMT00501267 147 0.6561 (1967/2998) 1 Intact Os_TE_501975 Os_TE_501971 Chr2 3035650 3035651 - TNR2A 152 0.3603 (1078/2992) 0 * * Os_TE_501970 Chr2 3035526 3035527 + RIREX_LTR 8828 0.0210 (59/2815) 0 * Os_TE_501969 Os_TE_501969 Chr2 3035522 3035521 - RIREX_LTR 8828 0.0184 (55/2986) 0 * Os_TE_501970 Os_TE_501960 Chr2 3033997 3033765 - ORSgTEMT01602413 239 0.7953 (1982/2492) 1 Intact * Os_TE_501953 Chr2 3033134 3032681 + ORSgTEMT00101457 316 0.6607 (1945/2944) 1 Intact Os_TE_501946 Os_TE_501946 Chr2 3032655 3033130 + ORSgTEMT00501366 147 0.6693 (1919/2867) 1 Intact Os_TE_501953 Os_TE_501945 Chr2 3032536 3032197 + OLO24 345 0.6516 (1904/2922) 1 Intact Os_TE_501940 Os_TE_501940 Chr2 3032190 3032536 - OLO24 345 0.7154 (1948/2723) 1 Intact Os_TE_501945 Os_TE_501939 Chr2 3032158 3032034 - ORSgTEMT01701281 153 0.7456 (1958/2626) 1 Intact Os_TE_501937 Os_TE_501937 Chr2 3032034 3032157 + ORSgTEMT01701101 133 0.6572 (1948/2964) 1 Intact Os_TE_501939 Os_TE_501924 Chr2 3023679 3023678 + COPI2_LTR 4733 0.0507 (100/1973) 0 * * Os_TE_501886 Chr2 2995453 2986899 - MuDR3_OS 8604 0.5238 (1499/2862) 1 Intact * Os_TE_501870 Chr2 2985218 2985219 - MERMITEH 1307 0.4738 (1364/2879) 0 * * Os_TE_501869 Chr2 2985088 2985089 - RIREX_LTR 8828 0.0349 (99/2833) 0 * Os_TE_501868 Os_TE_501868 Chr2 2985084 2985083 + RIREX_LTR 8828 0.0347 (100/2879) 0 * Os_TE_501869 Os_TE_501851 Chr2 2976139 2976138 + ORSgTETNOOT00032 218 0.0265 (44/1663) 0 * * Os_TE_501850 Chr2 2976083 2975910 - OsSN3 183 0.7229 (1651/2284) 1 Intact * Os_TE_501837 Chr2 2968961 2968960 - RIRE2_LTR 11306 0.0385 (115/2990) 0 * * Os_TE_501835 Chr2 2967253 2967254 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_501834 Os_TE_501834 Chr2 2967249 2967248 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_501835 Os_TE_501819 Chr2 2958753 2958752 - SC-3_LTR 5748 0.0003 (1/2986) 0 * * Os_TE_501816 Chr2 2957146 2957033 - ORSgTEMT01701348 105 0.5312 (1566/2948) 1 Intact Os_TE_501814 Os_TE_501814 Chr2 2957026 2957144 + ORSiTEMT01700001 120 0.5228 (1537/2940) 1 Intact Os_TE_501816 Os_TE_501813 Chr2 2956864 2956865 + ORSiTEMT00300001 383 0.0225 (66/2932) 0 * * Os_TE_501806 Chr2 2949391 2949392 - HELITRON1_OS 10182 0.0715 (212/2966) 0 * * Os_TE_501801 Chr2 2943233 2943234 - RIRE2_LTR 11306 0.0197 (53/2692) 0 * * Os_TE_501789 Chr2 2932727 2932872 - TNR2A 152 0.2767 (744/2689) 1 Intact * Os_TE_501788 Chr2 2932363 2932364 + RETRO2_LTR 12874 0.0014 (4/2940) 0 * * Os_TE_501781 Chr2 2927204 2927205 + STOWAWAY44_OS 240 0.0003 (1/2929) 0 * * Os_TE_501757 Chr2 2920765 2920764 + SZ-22_LTR 4403 0.0183 (55/2998) 0 * * Os_TE_501753 Chr2 2919378 2919379 - ORSiTETNOOT00200 3563 0.0432 (129/2988) 0 * Os_TE_501752 Os_TE_501752 Chr2 2919371 2919370 + TWIF 586 0.0451 (135/2991) 0 * Os_TE_501753 Os_TE_501743 Chr2 2903806 2903807 + RIREX_LTR 8828 0.0118 (35/2968) 0 * Os_TE_501742 Os_TE_501742 Chr2 2903802 2903801 - RIREX_LTR 8828 0.0141 (42/2976) 0 * Os_TE_501743 Os_TE_501732 Chr2 2898069 2898070 + RETRO2A_LTR 12895 0.0007 (2/2818) 0 * * Os_TE_501731 Chr2 2897469 2886256 - RETRO2_LTR 12874 0.5177 (1536/2967) 1 Intact Os_TE_501724 Os_TE_501724 Chr2 2886256 2897469 - RETRO2_LTR 12874 0.5115 (1492/2917) -1 Intact Os_TE_501731 Os_TE_501723 Chr2 2886121 2886122 - MPING 430 0.0004 (1/2854) 0 * Os_TE_501722 Os_TE_501722 Chr2 2886119 2886118 + MPING 430 0.0003 (1/2877) 0 * Os_TE_501723 Os_TE_501721 Chr2 2886106 2886105 - ORSgTEMT00501356 145 0.0194 (56/2884) 0 * Os_TE_501720 Os_TE_501720 Chr2 2886102 2886103 + ORSgTEMT00500852 140 0.0190 (55/2891) 0 * Os_TE_501721 Os_TE_501703 Chr2 2883606 2883605 - NDNA1TNA_OS 334 0.0188 (56/2986) 0 * Os_TE_501702 Os_TE_501702 Chr2 2883602 2883603 + NDNA1TNA_OS 334 0.0191 (57/2980) 0 * Os_TE_501703 Os_TE_501701 Chr2 2883478 2883479 - ORSgTEMT00900467 235 0.0098 (29/2964) 0 * * Os_TE_501682 Chr2 2869467 2869466 - RETRO2_LTR 12874 0.0710 (190/2675) 0 * * Os_TE_501662 Chr2 2865928 2865927 - SC-3_LTR 5748 0.0003 (1/2993) 0 * * Os_TE_501656 Chr2 2849942 2849943 + ORSgTEMT01602139 240 0.4688 (1392/2969) 0 * * Os_TE_501597 Chr2 2827842 2827843 - MPING 430 0.0003 (1/2978) 0 * Os_TE_501596 Os_TE_501596 Chr2 2827840 2827839 + MPING 430 0.0003 (1/2977) 0 * Os_TE_501597 Os_TE_501595 Chr2 2826162 2826163 + ORSgTETNOOT00908 242 0.0027 (8/2992) 0 * * Os_TE_501593 Chr2 2822903 2822904 + ORSiTERTOOT00296 5553 0.0027 (8/2995) 0 * Os_TE_501592 Os_TE_501592 Chr2 2822899 2822898 - SC-3_LTR 5748 0.0023 (7/2991) 0 * Os_TE_501593 Os_TE_501583 Chr2 2811028 2811029 - INDITTO 263 0.0198 (59/2974) 0 * Os_TE_501582 Os_TE_501582 Chr2 2811026 2811025 + INDITTO 263 0.0198 (59/2973) 0 * Os_TE_501583 Os_TE_501573 Chr2 2807405 2807406 + TRUNCATOR2_LTR 2904 0.0003 (1/2983) 0 * * Os_TE_501542 Chr2 2795611 2795612 - ORSgTEMT00300141 415 0.0629 (181/2876) 0 * Os_TE_501541 Os_TE_501541 Chr2 2795604 2795603 + ORSiTEMT00300001 383 0.0574 (165/2873) 0 * Os_TE_501542 Os_TE_501536 Chr2 2791260 2791261 + TNR2A 152 0.0581 (174/2996) 0 * * Os_TE_501534 Chr2 2790607 2790606 - INDITTO 263 0.0017 (5/2988) 0 * * Os_TE_501504 Chr2 2774850 2774851 + ORSiCMCM00100019 2717 0.0530 (155/2923) 0 * Os_TE_501503 Os_TE_501503 Chr2 2774846 2774845 - TRUNCATOR2_LTR 2904 0.0536 (155/2894) 0 * Os_TE_501504 Os_TE_501494 Chr2 2770615 2770198 + ORSgTEMT00300069 394 0.6234 (1836/2945) 1 Intact Os_TE_501491 Os_TE_501491 Chr2 2770194 2770608 + ORSgTEMT00300122 416 0.5864 (1592/2715) 1 Intact Os_TE_501494 Os_TE_501470 Chr2 2760428 2760429 + TESS 244 0.0003 (1/2983) 0 * * Os_TE_501455 Chr2 2755789 2755790 - SZ-46LTR 3360 0.1084 (318/2934) 0 * Os_TE_501454 Os_TE_501454 Chr2 2755785 2755784 + SZ-46LTR 3360 0.1091 (319/2924) 0 * Os_TE_501455 Os_TE_501453 Chr2 2755603 2755604 + SPMLIKE 10989 0.0004 (1/2825) 0 * Os_TE_501452 Os_TE_501452 Chr2 2755601 2755600 - ORSgTETN00200001 10994 0.0004 (1/2836) 0 * Os_TE_501453 Os_TE_501450 Chr2 2753669 2753670 - EnSpm-13_OS 11171 0.0003 (1/2978) 0 * Os_TE_501449 Os_TE_501449 Chr2 2753667 2753666 + EnSpm-13_OS 11171 0.0003 (1/2981) 0 * Os_TE_501450 Os_TE_501445 Chr2 2750914 2750915 - ENSPM4_OS 11610 0.1948 (583/2993) 0 * * Os_TE_501443 Chr2 2750422 2750423 - COPI2_LTR 4733 0.0054 (16/2986) 0 * Os_TE_501442 Os_TE_501442 Chr2 2750418 2750417 + COPI2_LTR 4733 0.0057 (17/2986) 0 * Os_TE_501443 Os_TE_501439 Chr2 2746260 2746259 + ORSiTEMT00100001 540 0.0023 (7/2990) 0 * * Os_TE_501429 Chr2 2742045 2742044 + STOWAWAY45_OS 266 0.0481 (141/2934) 0 * * Os_TE_501427 Chr2 2741326 2741325 - ORSgTEMT01400006 213 0.0017 (5/2932) 0 * * Os_TE_501425 Chr2 2740967 2740968 - COPI2_LTR 4733 0.0402 (116/2886) 0 * Os_TE_501424 Os_TE_501424 Chr2 2740963 2740962 + COPI2_LTR 4733 0.0241 (69/2867) 0 * Os_TE_501425 Os_TE_501413 Chr2 2737093 2737094 - SC-4_LTR 5218 0.0003 (1/2995) 0 * Os_TE_501412 Os_TE_501412 Chr2 2737089 2737088 + SC-4_LTR 5218 0.0003 (1/2996) 0 * Os_TE_501413 Os_TE_501407 Chr2 2732519 2732518 - ORSgTEMT02000003 197 0.0797 (238/2987) 0 * * Os_TE_501402 Chr2 2728770 2728464 + ORSgTEMT00100272 356 0.4959 (1454/2932) 1 Intact * Os_TE_501377 Chr2 2725337 2725336 - ORSgTEMT02400148 214 0.2365 (689/2913) 0 * Os_TE_501376 Os_TE_501376 Chr2 2725336 2725337 - TYPEM 227 0.2350 (689/2932) 0 * Os_TE_501377 Os_TE_501374 Chr2 2725093 2725092 + ORSgTEMT01701591 154 0.0014 (4/2930) 0 * Os_TE_501373 Os_TE_501373 Chr2 2725088 2725089 - STOWAWAY1_OS 149 0.0010 (3/2942) 0 * Os_TE_501374 Os_TE_501372 Chr2 2724977 2724978 - AMYLTP 383 0.2304 (683/2964) 0 * Os_TE_501371 Os_TE_501371 Chr2 2724969 2724968 + AMYLTP 383 0.2302 (682/2963) 0 * Os_TE_501372 Os_TE_501368 Chr2 2723316 2723317 - ORSgTEMT02000041 194 0.2428 (573/2360) 0 * * Os_TE_501351 Chr2 2716671 2716672 + ORSiTERTOOT00028 8600 0.0017 (2/1177) 0 * * Os_TE_501334 Chr2 2702269 2712022 - ENSPM6_OS 9815 0.5973 (448/750) 1 Intact * Os_TE_501330 Chr2 2698691 2698692 + JOUZHENA 607 0.0033 (4/1225) 0 * Os_TE_501329 Os_TE_501329 Chr2 2698684 2698683 - JOUZHENA 607 0.0024 (3/1225) 0 * Os_TE_501330 Os_TE_501328 Chr2 2698526 2698527 - RETROSAT2LTR 12796 0.0033 (4/1223) 0 * * Os_TE_501327 Chr2 2697297 2697296 - SZ-44LTR 1408 0.0041 (5/1219) 0 * * Os_TE_501294 Chr2 2685705 2685704 - ORSgTETNOOT00282 147 0.0004 (1/2675) 0 * * Os_TE_501266 Chr2 2673741 2673742 + COPIA2-LTR_OS 6433 0.0010 (3/2950) 0 * * Os_TE_501265 Chr2 2673732 2673733 - ORSiTETN00200006 8216 0.1464 (437/2984) 0 * Os_TE_501264 Os_TE_501264 Chr2 2673730 2673729 + ORSiTETN00200006 8216 0.1468 (439/2990) 0 * Os_TE_501265 Os_TE_501217 Chr2 2642869 2642870 + ORSiTERTOOT00296 5553 0.0333 (87/2613) 0 * Os_TE_501216 Os_TE_501216 Chr2 2642865 2642864 - SC-3_LTR 5748 0.0297 (89/2996) 0 * Os_TE_501217 Os_TE_501204 Chr2 2637066 2637067 + STOWAWAY51_OS 246 0.0003 (1/2985) 0 * * Os_TE_501191 Chr2 2632373 2632374 - RIRE2_LTR 11306 0.0003 (1/2981) 0 * Os_TE_501190 Os_TE_501190 Chr2 2632369 2632368 + RIRE2_LTR 11306 0.0003 (1/2981) 0 * Os_TE_501191 Os_TE_501188 Chr2 2631146 2631147 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_501187 Os_TE_501187 Chr2 2631142 2631141 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_501188 Os_TE_501140 Chr2 2618666 2618665 + ORSgTETNOOT00908 242 0.0003 (1/2994) 0 * * Os_TE_501081 Chr2 2563468 2563469 + MuDR2_OS 6770 0.0088 (26/2953) 0 * Os_TE_501080 Os_TE_501080 Chr2 2563459 2563458 - MuDR2_OS 6770 0.0088 (26/2964) 0 * Os_TE_501081 Os_TE_501078 Chr2 2562501 2562502 - RIREX_LTR 8828 0.0010 (3/2920) 0 * Os_TE_501077 Os_TE_501077 Chr2 2562497 2562496 + RIREX_LTR 8828 0.0010 (3/2906) 0 * Os_TE_501078 Os_TE_501058 Chr2 2556740 2556741 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_501057 Os_TE_501057 Chr2 2556736 2556735 + COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_501058 Os_TE_500996 Chr2 2522647 2522980 + NDNA1TNA_OS 334 0.1553 (456/2937) 1 Intact * Os_TE_500987 Chr2 2519796 2519795 + TWIFB1 3737 0.0004 (1/2811) 0 * * Os_TE_500926 Chr2 2487714 2487713 - TRUNCATOR2_LTR 2904 0.4653 (1319/2835) 0 * * Os_TE_500924 Chr2 2486444 2486443 + TWIF 586 0.0014 (2/1431) -1 * * Os_TE_500828 Chr2 2446712 2446713 + TOS17LTR 138 0.0004 (1/2827) 0 * Os_TE_500827 Os_TE_500827 Chr2 2446708 2446707 - TOS17LTR 138 0.0003 (1/2992) 0 * Os_TE_500828 Os_TE_500750 Chr2 2408236 2408237 - FOCUS 257 0.1290 (386/2993) 0 * Os_TE_500749 Os_TE_500749 Chr2 2408234 2408233 + FOCUS 257 0.1291 (386/2990) 0 * Os_TE_500750 Os_TE_500745 Chr2 2404712 2404713 + COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_500744 Os_TE_500744 Chr2 2404708 2404707 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_500745 Os_TE_500743 Chr2 2403920 2403921 - SC-3_LTR 5748 0.0003 (1/2996) 0 * Os_TE_500742 Os_TE_500742 Chr2 2403916 2403915 + ORSiTERTOOT00296 5553 0.0003 (1/2995) 0 * Os_TE_500743 Os_TE_500740 Chr2 2403273 2403272 + STOWAWAY51_OS 246 0.0037 (11/2991) 0 * Os_TE_500739 Os_TE_500739 Chr2 2403267 2403268 + ORSgTEMT01601591 242 0.0033 (10/2996) 0 * Os_TE_500740 Os_TE_500727 Chr2 2397426 2397425 - ORSgTEMT01600223 220 0.0004 (1/2782) 0 * * Os_TE_500699 Chr2 2386547 2378418 - RIREX_LTR 8828 0.1383 (414/2994) 1 Intact * Os_TE_500688 Chr2 2375823 2375545 + ORSgTEMT05200253 282 0.4440 (1026/2311) 1 Intact * Os_TE_500678 Chr2 2372028 2371696 + ORSgTEMT00100531 325 0.4151 (961/2315) 1 Intact * Os_TE_500622 Chr2 2350594 2350595 - TRUNCATOR2_LTR 2904 0.3251 (940/2891) 0 * * Os_TE_500611 Chr2 2346276 2346275 + SZ-21LTR 1236 0.0004 (1/2849) 0 * * Os_TE_500595 Chr2 2335493 2335492 + SC-8_LTR 4951 0.0003 (1/2984) 0 * * Os_TE_500579 Chr2 2326037 2326038 - SC-4_LTR 5218 0.0004 (1/2459) 0 * Os_TE_500578 Os_TE_500578 Chr2 2326033 2326032 + SC-4_LTR 5218 0.0004 (1/2461) 0 * Os_TE_500579 Os_TE_500524 Chr2 2286886 2277418 - ORSiTERTOOT00439 9157 0.8937 (2161/2418) 1 Intact * Os_TE_500513 Chr2 2284786 2284785 - RETRO1_LTR 8314 0.0138 (30/2179) 0 * * Os_TE_500507 Chr2 2277418 2286884 + ORSiTERTOOT00439 9157 0.7334 (1593/2172) 1 Intact * Os_TE_500503 Chr2 2276282 2276281 + RIREX_LTR 8828 0.2114 (338/1599) 0 * * Os_TE_500498 Chr2 2274113 2265032 - MuDR3_OS 8604 0.7406 (1088/1469) 1 Intact * Os_TE_500449 Chr2 2253425 2253078 + NDNA2TNA_OS 346 0.4511 (977/2166) 1 Intact * Os_TE_500437 Chr2 2247034 2247033 + ORSgTEMT01400012 212 0.0016 (3/1934) 0 * * Os_TE_500433 Chr2 2245744 2245745 - MPING 430 0.0003 (1/2993) 0 * Os_TE_500432 Os_TE_500432 Chr2 2245742 2245741 + MPING 430 0.0003 (1/2995) 0 * Os_TE_500433 Os_TE_500405 Chr2 2235674 2235675 - SC-8_LTR 4951 0.0003 (1/2970) 0 * Os_TE_500404 Os_TE_500404 Chr2 2235670 2235669 + SC-8_LTR 4951 0.0003 (1/2970) 0 * Os_TE_500405 Os_TE_500352 Chr2 2221030 2221031 + ORSgTEMT00600272 361 0.0104 (31/2988) 0 * Os_TE_500351 Os_TE_500351 Chr2 2221025 2221024 + ORSgTEMT00600376 329 0.0094 (28/2985) 0 * Os_TE_500352 Os_TE_500342 Chr2 2219599 2219598 + OSTE18 129 0.0087 (25/2860) 0 * Os_TE_500341 Os_TE_500341 Chr2 2219595 2219596 + OSTE18 129 0.0073 (21/2866) 0 * Os_TE_500342 Os_TE_500315 Chr2 2217580 2217581 + ORSiTERTOOT00269 10834 0.0010 (3/2914) 0 * * Os_TE_500313 Chr2 2217440 2217441 + ORSgTETNOOT00221 261 0.0091 (27/2954) 0 * Os_TE_500312 Os_TE_500312 Chr2 2217438 2217437 - ORSgTETNOOT00053 263 0.0094 (28/2964) 0 * Os_TE_500313 Os_TE_500305 Chr2 2216307 2216308 + INDITTO 263 0.0127 (38/2985) 0 * Os_TE_500304 Os_TE_500304 Chr2 2216305 2216304 - INDITTO 263 0.0127 (38/2993) 0 * Os_TE_500305 Os_TE_500258 Chr2 2191987 2191988 - RIRE2_LTR 11306 0.0104 (30/2898) 0 * Os_TE_500257 Os_TE_500257 Chr2 2191983 2191982 + RIRE2_LTR 11306 0.0104 (31/2985) 0 * Os_TE_500258 Os_TE_500238 Chr2 2188760 2188761 - TRUNCATOR2_LTR 2904 0.2441 (680/2786) 0 * * Os_TE_500228 Chr2 2185803 2185804 + TELIA 141 0.0003 (1/2926) 0 * Os_TE_500227 Os_TE_500227 Chr2 2185795 2185794 - TELIA 141 0.0003 (1/2929) 0 * Os_TE_500228 Os_TE_500219 Chr2 2182942 2182941 - COPI2_LTR 4733 0.0007 (2/2902) 0 * * Os_TE_500207 Chr2 2179832 2179833 + RETRO1_LTR 8314 0.0081 (24/2977) 0 * * Os_TE_500203 Chr2 2179015 2179016 + RETRO2A_LTR 12895 0.0745 (223/2995) 0 * Os_TE_500202 Os_TE_500202 Chr2 2179011 2179010 - RETRO1_LTR 8314 0.0739 (221/2991) 0 * Os_TE_500203 Os_TE_500167 Chr2 2158851 2158850 - COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * * Os_TE_500136 Chr2 2147269 2147268 + MPING 430 0.0003 (1/2885) 0 * * Os_TE_500132 Chr2 2146734 2146735 - SZ-25LTR 330 0.0014 (4/2938) 0 * Os_TE_500131 Os_TE_500131 Chr2 2146730 2146729 + COPI1_LTR 4721 0.0014 (4/2934) 0 * Os_TE_500132 Os_TE_500113 Chr2 2138507 2138506 + ORSiTERTOOT00250 3262 0.0003 (1/2872) 0 * * Os_TE_500108 Chr2 2134872 2134873 + ORSiTERTOOT00296 5553 0.0003 (1/2991) 0 * Os_TE_500107 Os_TE_500107 Chr2 2134868 2134867 - SC-3_LTR 5748 0.0003 (1/2988) 0 * Os_TE_500108 Os_TE_500093 Chr2 2124876 2124877 + TWIFB1 3737 0.0003 (1/2929) 0 * * Os_TE_500087 Chr2 2122556 2122557 + COPIA2-LTR_OS 6433 0.3639 (1086/2984) 0 * Os_TE_500086 Os_TE_500086 Chr2 2122552 2122551 - COPIA2-LTR_OS 6433 0.3685 (1103/2993) 0 * Os_TE_500087 Os_TE_500076 Chr2 2118563 2118564 + EnSpm-13_OS 11171 0.0007 (2/2993) 0 * Os_TE_500075 Os_TE_500075 Chr2 2118561 2118560 - EnSpm-13_OS 11171 0.0007 (2/2990) 0 * Os_TE_500076 Os_TE_500063 Chr2 2109388 2109389 - SC-5 3770 0.0090 (27/2994) 0 * Os_TE_500062 Os_TE_500062 Chr2 2109384 2109383 + SC-5 3770 0.0080 (24/2991) 0 * Os_TE_500063 Os_TE_500057 Chr2 2104696 2104697 - COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_500056 Os_TE_500056 Chr2 2104692 2104691 + COPIA2-LTR_OS 6433 0.0003 (1/2956) 0 * Os_TE_500057 Os_TE_500050 Chr2 2096324 2096325 + MPING 430 0.0003 (1/2996) 0 * Os_TE_500049 Os_TE_500049 Chr2 2096322 2096321 - MPING 430 0.0003 (1/2997) 0 * Os_TE_500050 Os_TE_500043 Chr2 2093765 2093764 - ATLANTYS-LTR_OS 13740 0.0017 (5/2894) 0 * * Os_TE_500010 Chr2 2082027 2082026 - ORSgTEMT02600002 356 0.0008 (2/2500) 0 * * Os_TE_500001 Chr2 2081018 2081017 - F569 228 0.0083 (24/2885) 0 * Os_TE_500000 Os_TE_500000 Chr2 2081012 2081013 + F569 228 0.0079 (23/2897) 0 * Os_TE_500001 Os_TE_499992 Chr2 2076096 2076097 + ORSiTERTOOT00296 5553 0.0007 (2/2984) 0 * * Os_TE_499983 Chr2 2068430 2068431 + RIREX_LTR 8828 0.0017 (5/2984) 0 * * Os_TE_499956 Chr2 2062223 2062222 - RIREX_LTR 8828 0.0003 (1/2978) 0 * * Os_TE_499933 Chr2 2046876 2050263 + ORSiCMCM00100019 2717 0.7807 (2040/2613) 1 Intact * Os_TE_499925 Chr2 2044612 2044611 + STOWAWAY45_OS 266 0.0004 (1/2492) 0 * Os_TE_499924 Os_TE_499924 Chr2 2044609 2044610 - STOWAWAY45_OS 266 0.0004 (1/2495) 0 * Os_TE_499925 Os_TE_499918 Chr2 2037402 2037403 + MuDR2_OS 6770 0.0610 (182/2986) 0 * Os_TE_499917 Os_TE_499917 Chr2 2037393 2037392 - MuDR2_OS 6770 0.0548 (163/2975) 0 * Os_TE_499918 Os_TE_499915 Chr2 2036702 2036703 + COPI2_LTR 4733 0.0007 (2/2994) 0 * Os_TE_499914 Os_TE_499914 Chr2 2036698 2036697 - COPI2_LTR 4733 0.0007 (2/2995) 0 * Os_TE_499915 Os_TE_499911 Chr2 2035260 2035259 + SEVERIN-2 1952 0.0033 (9/2742) 0 * * Os_TE_499874 Chr2 2025535 2025536 + MPING 430 0.0003 (1/2994) 0 * Os_TE_499873 Os_TE_499873 Chr2 2025533 2025532 - MPING 430 0.0003 (1/2994) 0 * Os_TE_499874 Os_TE_499859 Chr2 2024206 2024207 + STOWAWAY51_OS 246 0.0600 (176/2935) 0 * * Os_TE_499820 Chr2 2008711 2008710 + SZ-55_LTR 10318 0.0003 (1/2992) 0 * * Os_TE_499803 Chr2 2003535 2003536 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * * Os_TE_499760 Chr2 1970141 1970140 - STOWAWAY51_OS 246 0.0514 (153/2978) 0 * * Os_TE_499757 Chr2 1969333 1969334 - SC-8_LTR 4951 0.0003 (1/2975) 0 * Os_TE_499756 Os_TE_499756 Chr2 1969329 1969328 + SC-8_LTR 4951 0.0003 (1/2971) 0 * Os_TE_499757 Os_TE_499724 Chr2 1959923 1959924 - SC-3_LTR 5748 0.0003 (1/2992) 0 * Os_TE_499723 Os_TE_499723 Chr2 1959919 1959918 + ORSiTERTOOT00296 5553 0.0003 (1/2991) 0 * Os_TE_499724 Os_TE_499715 Chr2 1956848 1956849 + ORSgTEMT00500578 129 0.0017 (5/2986) 0 * Os_TE_499714 Os_TE_499714 Chr2 1956846 1956845 - GAIJIN 147 0.0017 (5/2988) 0 * Os_TE_499715 Os_TE_499687 Chr2 1946077 1946076 + STOWAWAY44_OS 240 0.0020 (6/2999) 0 * * Os_TE_499685 Chr2 1945986 1945987 + RIREX_LTR 8828 0.0013 (4/2995) 0 * * Os_TE_499653 Chr2 1931637 1931638 + COPI2_LTR 4733 0.0007 (2/2991) 0 * Os_TE_499652 Os_TE_499652 Chr2 1931633 1931632 - COPI2_LTR 4733 0.0007 (2/2994) 0 * Os_TE_499653 Os_TE_499650 Chr2 1930998 1930999 + SZ-30_LTR 6377 0.0017 (5/2992) 0 * * Os_TE_499645 Chr2 1929647 1929648 - MPING 430 0.0003 (1/2972) 0 * Os_TE_499644 Os_TE_499644 Chr2 1929645 1929644 + MPING 430 0.0003 (1/2972) 0 * Os_TE_499645 Os_TE_499638 Chr2 1924168 1924169 - RIREX_LTR 8828 0.0003 (1/2909) 0 * Os_TE_499637 Os_TE_499637 Chr2 1924164 1924163 + RIREX_LTR 8828 0.0003 (1/2892) 0 * Os_TE_499638 Os_TE_499617 Chr2 1916022 1916023 - CACTA-G1 797 0.0020 (5/2493) 0 * Os_TE_499616 Os_TE_499616 Chr2 1916020 1916019 - EnSpm-12_OS 12603 0.0020 (5/2515) 0 * Os_TE_499617 Os_TE_499574 Chr2 1878009 1878010 - ORSgTEMT02400246 177 0.0516 (152/2946) 0 * * Os_TE_499565 Chr2 1875203 1875204 + ORSiTERTOOT00226 792 0.0003 (1/2997) 0 * Os_TE_499564 Os_TE_499564 Chr2 1875199 1875198 - SZ-22_LTR 4403 0.0003 (1/2997) 0 * Os_TE_499565 Os_TE_499559 Chr2 1872663 1872664 - KIDDOC 275 0.0003 (1/2989) 0 * Os_TE_499558 Os_TE_499558 Chr2 1872659 1872658 + KIDDOC 275 0.0003 (1/2991) 0 * Os_TE_499559 Os_TE_499527 Chr2 1865332 1865331 - ORSgTEMT01701112 154 0.0017 (5/2970) 0 * * Os_TE_499498 Chr2 1839057 1839058 - COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_499497 Os_TE_499497 Chr2 1839053 1839052 + COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_499498 Os_TE_499489 Chr2 1835292 1835291 - RETROSAT2LTR 12796 0.0131 (39/2988) 0 * * Os_TE_499488 Chr2 1834891 1834892 - RETRO2_LTR 12874 0.0007 (2/2992) 0 * Os_TE_499487 Os_TE_499487 Chr2 1834887 1834886 + RETRO2A_LTR 12895 0.0007 (2/2990) 0 * Os_TE_499488 Os_TE_499470 Chr2 1829419 1829420 + ORSgTEMT00600272 361 0.0113 (33/2916) 0 * Os_TE_499469 Os_TE_499469 Chr2 1829416 1829415 + ORSgTEMT00600576 351 0.0135 (39/2892) 0 * Os_TE_499470 Os_TE_499448 Chr2 1819751 1819750 - INDITTO 263 0.0007 (2/2973) 0 * * Os_TE_499435 Chr2 1800840 1800841 + INDITTO 263 0.0169 (41/2427) 0 * Os_TE_499434 Os_TE_499434 Chr2 1800838 1800837 - INDITTO 263 0.0165 (40/2425) 0 * Os_TE_499435 Os_TE_499414 Chr2 1783106 1783107 - RETROSAT2LTR 12796 0.0003 (1/2950) 0 * * Os_TE_499395 Chr2 1767296 1767297 + ORSiTERTOOT00296 5553 0.0023 (7/2991) 0 * Os_TE_499394 Os_TE_499394 Chr2 1767292 1767291 - SC-3_LTR 5748 0.0027 (8/2993) 0 * Os_TE_499395 Os_TE_499335 Chr2 1728497 1728498 - COPI2_LTR 4733 0.0019 (5/2647) 0 * * Os_TE_499330 Chr2 1726360 1726361 - COPIA2-LTR_OS 6433 0.0007 (2/2996) 0 * Os_TE_499329 Os_TE_499329 Chr2 1726356 1726355 + COPIA2-LTR_OS 6433 0.0007 (2/2991) 0 * Os_TE_499330 Os_TE_499316 Chr2 1720885 1720884 + ORSiTERTOOT00332 5395 0.0047 (14/2990) 0 * * Os_TE_499288 Chr2 1705088 1705089 + STOWAWAY9_OS 235 0.0009 (1/1067) -1 * * Os_TE_499270 Chr2 1699203 1699202 + STOWAWAY51_OS 246 0.0003 (1/2960) 0 * Os_TE_499269 Os_TE_499269 Chr2 1699197 1699198 - STOWAWAY51_OS 246 0.0003 (1/2915) 0 * Os_TE_499270 Os_TE_499221 Chr2 1659947 1659948 - ORSiTERTOOT00333 4719 0.0003 (1/2998) 0 * Os_TE_499220 Os_TE_499220 Chr2 1659944 1659943 + ORSiTERTOOT00333 4719 0.0003 (1/2998) 0 * Os_TE_499221 Os_TE_499218 Chr2 1659033 1659034 + OSR3_LTR 5201 0.0003 (1/2993) 0 * Os_TE_499217 Os_TE_499217 Chr2 1659029 1659028 - OSR3_LTR 5201 0.0003 (1/2998) 0 * Os_TE_499218 Os_TE_499213 Chr2 1656925 1656924 - RETROSAT5_LTR 13878 0.0168 (50/2978) 0 * * Os_TE_499201 Chr2 1649790 1649791 + NDNA1TNA_OS 334 0.0369 (110/2985) 0 * Os_TE_499200 Os_TE_499200 Chr2 1649788 1649787 - NDNA1TNA_OS 334 0.0379 (113/2984) 0 * Os_TE_499201 Os_TE_499177 Chr2 1639246 1639247 + ORSiTERTOOT00296 5553 0.0003 (1/2989) 0 * Os_TE_499176 Os_TE_499176 Chr2 1639242 1639241 - SC-3_LTR 5748 0.0003 (1/2990) 0 * Os_TE_499177 Os_TE_499153 Chr2 1625039 1625040 + ORSiTERTOOT00296 5553 0.0003 (1/2969) 0 * Os_TE_499152 Os_TE_499152 Chr2 1625035 1625034 - SC-3_LTR 5748 0.0003 (1/2971) 0 * Os_TE_499153 Os_TE_499148 Chr2 1620920 1620919 + STOWAWAY1_OS 149 0.0013 (4/2990) 0 * * Os_TE_499136 Chr2 1609121 1609122 + INDITTO 263 0.0007 (2/2985) 0 * Os_TE_499135 Os_TE_499135 Chr2 1609119 1609118 - INDITTO 263 0.0007 (2/2992) 0 * Os_TE_499136 Os_TE_499134 Chr2 1608574 1608575 + ORSiTERTOOT00381 4988 0.0003 (1/2993) 0 * Os_TE_499133 Os_TE_499133 Chr2 1608570 1608569 - SC-8_LTR 4951 0.0003 (1/2994) 0 * Os_TE_499134 Os_TE_499114 Chr2 1592909 1592910 - CLOUD 734 0.0054 (16/2940) 0 * Os_TE_499113 Os_TE_499113 Chr2 1592901 1592900 - CLOUD 734 0.0054 (16/2939) 0 * Os_TE_499114 Os_TE_499103 Chr2 1591238 1591237 - TYPEM 227 0.0003 (1/2980) 0 * Os_TE_499102 Os_TE_499102 Chr2 1591237 1591238 - ORSgTEMT02400246 177 0.0003 (1/2987) 0 * Os_TE_499103 Os_TE_499101 Chr2 1591183 1591184 + HARB-1_OS 5166 0.0003 (1/2924) 0 * Os_TE_499100 Os_TE_499100 Chr2 1591181 1591180 - HARB-1_OS 5166 0.0003 (1/2989) 0 * Os_TE_499101 Os_TE_499099 Chr2 1591165 1591166 + ORSgTEMT00600120 364 0.0386 (114/2950) 0 * Os_TE_499098 Os_TE_499098 Chr2 1591163 1591162 - CASTAWAY 364 0.0378 (113/2992) 0 * Os_TE_499099 Os_TE_499097 Chr2 1591070 1591069 + STOWAWAY51_OS 246 0.0007 (2/2990) 0 * Os_TE_499096 Os_TE_499096 Chr2 1591064 1591065 + ORSgTEMT01601591 242 0.0007 (2/2989) 0 * Os_TE_499097 Os_TE_499086 Chr2 1589441 1589173 + ORSgTEMT06100010 269 0.7737 (2314/2991) 1 Intact Os_TE_499083 Os_TE_499083 Chr2 1589173 1589441 - ORSgTEMT06100010 269 0.8673 (2334/2691) 0.92 Intact Os_TE_499086 Os_TE_499076 Chr2 1586335 1586334 - COPI2_LTR 4733 0.0089 (26/2924) 0 * * Os_TE_499075 Chr2 1586159 1586160 + RIREX_LTR 8828 0.0168 (50/2976) 0 * Os_TE_499074 Os_TE_499074 Chr2 1586155 1586154 - RIREX_LTR 8828 0.0165 (49/2977) 0 * Os_TE_499075 Os_TE_499041 Chr2 1573505 1573506 + AMYLTP 383 0.0007 (2/2994) 0 * Os_TE_499040 Os_TE_499040 Chr2 1573497 1573496 - AMYLTP 383 0.0007 (2/2993) 0 * Os_TE_499041 Os_TE_499024 Chr2 1569017 1569018 + COPIA2-LTR_OS 6433 0.0007 (2/2973) 0 * Os_TE_499023 Os_TE_499023 Chr2 1569013 1569012 - COPIA2-LTR_OS 6433 0.0007 (2/2973) 0 * Os_TE_499024 Os_TE_499022 Chr2 1568299 1568300 + SC-8_LTR 4951 0.0003 (1/2997) 0 * Os_TE_499021 Os_TE_499021 Chr2 1568295 1568294 - SC-8_LTR 4951 0.0003 (1/2996) 0 * Os_TE_499022 Os_TE_499002 Chr2 1557352 1557353 + HELITRON7_OS 10153 0.0090 (26/2894) 0 * * Os_TE_498983 Chr2 1551514 1551515 - SC-8_LTR 4951 0.0003 (1/2991) 0 * Os_TE_498982 Os_TE_498982 Chr2 1551510 1551509 + SC-8_LTR 4951 0.0003 (1/2991) 0 * Os_TE_498983 Os_TE_498974 Chr2 1544564 1544565 - SC-3_LTR 5748 0.0003 (1/2991) 0 * * Os_TE_498968 Chr2 1541505 1541506 + ORSiTERTOOT00296 5553 0.0073 (22/2994) 0 * Os_TE_498967 Os_TE_498967 Chr2 1541501 1541500 - SC-3_LTR 5748 0.0073 (22/2995) 0 * Os_TE_498968 Os_TE_498962 Chr2 1539336 1539337 + TWIFBIG 3567 0.0004 (1/2401) 0 * * Os_TE_498936 Chr2 1525571 1525570 - COPIA2-LTR_OS 6433 0.0003 (1/2945) 0 * * Os_TE_498934 Chr2 1523790 1523789 - ORSiTERT00200154 9386 0.0154 (46/2988) 0 * * Os_TE_498931 Chr2 1522535 1521433 + RETRO2_LTR 12874 0.7417 (2205/2973) 1 Solo_LTR Os_TE_498930 Os_TE_498930 Chr2 1521433 1522535 - RETRO2_LTR 12874 0.7513 (2136/2843) 1 Solo_LTR Os_TE_498931 Os_TE_498925 Chr2 1520485 1520484 + SZ-43LTR 4039 0.0480 (134/2791) 0 * * Os_TE_498923 Chr2 1520012 1520013 - COPI2_LTR 4733 0.0357 (107/2997) 0 * Os_TE_498922 Os_TE_498922 Chr2 1520008 1520007 + COPI2_LTR 4733 0.0347 (104/2995) 0 * Os_TE_498923 Os_TE_498915 Chr2 1516630 1516631 + ORSiTERTOOT00441 4741 0.0031 (9/2948) 0 * Os_TE_498914 Os_TE_498914 Chr2 1516626 1516625 - ORSiTERTOOT00441 4741 0.0031 (9/2949) 0 * Os_TE_498915 Os_TE_498913 Chr2 1516316 1516315 + ORSgTEMT04800085 366 0.0020 (6/2960) 0 * * Os_TE_498906 Chr2 1514749 1514748 + ORSgTEMT01602609 233 0.0020 (6/2957) 0 * * Os_TE_498905 Chr2 1514498 1514497 + ORSgTEMT01602158 232 0.0013 (4/2985) 0 * * Os_TE_498890 Chr2 1512296 1512295 + STOWAWAY51_OS 246 0.0003 (1/2980) 0 * * Os_TE_498889 Chr2 1498547 1498548 - STOWAWAY51_OS 246 0.0003 (1/2989) 0 * * Os_TE_498863 Chr2 1494899 1494900 - ORSgTETNOOT00754 253 0.0023 (7/2986) 0 * Os_TE_498862 Os_TE_498862 Chr2 1494894 1494893 - ORSgTETNOOT00477 252 0.0017 (5/2990) 0 * Os_TE_498863 Os_TE_498845 Chr2 1492918 1492917 - ORSgTEMT01400022 212 0.0021 (6/2852) 0 * * Os_TE_498816 Chr2 1486595 1486594 - ORSgTETNOOT00754 253 0.0795 (238/2994) 0 * * Os_TE_498815 Chr2 1486515 1486516 + ORSgTETNOOT01834 251 0.0775 (232/2992) 0 * * Os_TE_498812 Chr2 1486491 1486490 + ORSgTEMT01601591 242 0.0003 (1/2934) 0 * Os_TE_498811 Os_TE_498811 Chr2 1486488 1486489 - STOWAWAY51_OS 246 0.0003 (1/2989) 0 * Os_TE_498812 Os_TE_498794 Chr2 1479329 1479330 - SC-3_LTR 5748 0.0003 (1/2975) 0 * Os_TE_498793 Os_TE_498793 Chr2 1479325 1479324 + ORSiTERTOOT00296 5553 0.0003 (1/2975) 0 * Os_TE_498794 Os_TE_498790 Chr2 1476690 1476689 - ORSiTEMT01300001 950 0.0144 (43/2982) 0 * * Os_TE_498789 Chr2 1476194 1476195 + DS-RICE4N 715 0.0007 (2/2977) 0 * Os_TE_498788 Os_TE_498788 Chr2 1476187 1476186 - DS-RICE2N 613 0.0007 (2/2971) 0 * Os_TE_498789 Os_TE_498787 Chr2 1476138 1476137 - STOWAWAY51_OS 246 0.0003 (1/2971) 0 * Os_TE_498786 Os_TE_498786 Chr2 1476132 1476133 + STOWAWAY51_OS 246 0.0003 (1/2974) 0 * Os_TE_498787 Os_TE_498780 Chr2 1473522 1473523 - ORSgTERT00200486 3946 0.6318 (1886/2985) 0.91 * * Os_TE_498776 Chr2 1471194 1471195 - SC-3_LTR 5748 0.0092 (27/2929) 0 * * Os_TE_498759 Chr2 1463012 1463013 + SC-8_LTR 4951 0.0013 (4/2988) 0 * Os_TE_498758 Os_TE_498758 Chr2 1463008 1463007 - SC-8_LTR 4951 0.0013 (4/2988) 0 * Os_TE_498759 Os_TE_498746 Chr2 1451925 1451926 + SC-1_LTR 6888 0.0554 (165/2978) 0 * * Os_TE_498739 Chr2 1450837 1450838 - STOWAWAY45_OS 266 0.0017 (5/2980) 0 * * Os_TE_498730 Chr2 1442351 1442350 + RETRO2_LTR 12874 0.0068 (20/2925) 0 * * Os_TE_498708 Chr2 1432557 1432556 - GYPSY-A_LTR 8951 0.0010 (3/2943) 0 * * Os_TE_498700 Chr2 1431850 1431849 + ORSgTEMT01601591 242 0.0003 (1/2965) 0 * * Os_TE_498676 Chr2 1427176 1427177 + MPING 430 0.0003 (1/2980) 0 * * Os_TE_498628 Chr2 1412057 1412058 + MERMITE18E 1528 0.0004 (1/2798) 0 * * Os_TE_498599 Chr2 1394791 1394792 - ORSiTETNOOT00200 3563 0.0172 (41/2381) 0 * Os_TE_498598 Os_TE_498598 Chr2 1394784 1394783 + TWIF 586 0.0189 (45/2384) 0 * Os_TE_498599 Os_TE_498578 Chr2 1383805 1383804 + STOWAWAY51_OS 246 0.0417 (124/2971) 0 * Os_TE_498577 Os_TE_498577 Chr2 1383799 1383800 - STOWAWAY51_OS 246 0.0404 (120/2968) 0 * Os_TE_498578 Os_TE_498571 Chr2 1380644 1380645 - OSR3_LTR 5201 0.0003 (1/2997) 0 * Os_TE_498570 Os_TE_498570 Chr2 1380640 1380639 + OSR3_LTR 5201 0.0003 (1/2997) 0 * Os_TE_498571 Os_TE_498554 Chr2 1375583 1375584 + MuDR3_OS 8604 0.0003 (1/2965) 0 * * Os_TE_498503 Chr2 1363606 1363607 - NDNA1TNA_OS 334 0.0003 (1/2977) 0 * * Os_TE_498502 Chr2 1363417 1363416 - HELITRON2_OS 15167 0.1323 (392/2963) 0 * Os_TE_498501 Os_TE_498501 Chr2 1363416 1363417 + HELITRON2_OS 15167 0.1270 (374/2946) 0 * Os_TE_498502 Os_TE_498461 Chr2 1338969 1338970 - STOWAWAY51_OS 246 0.0007 (2/2984) 0 * * Os_TE_498457 Chr2 1334479 1334480 + TWIFB1 3737 0.0003 (1/2966) 0 * * Os_TE_498456 Chr2 1334418 1334417 - MuDR3_OS 8604 0.0003 (1/2964) 0 * * Os_TE_498443 Chr2 1328868 1328869 - SC-3_LTR 5748 0.0003 (1/2997) 0 * Os_TE_498442 Os_TE_498442 Chr2 1328864 1328863 + ORSiTERTOOT00296 5553 0.0003 (1/2997) 0 * Os_TE_498443 Os_TE_498420 Chr2 1322625 1323390 - MUDRN1_OS 764 0.6262 (1709/2729) 1 Intact * Os_TE_498405 Chr2 1319550 1319153 - ORSgTEMT00300160 419 0.6299 (1855/2945) 1 Intact * Os_TE_498397 Chr2 1311660 1311659 + STOWAWAY51_OS 246 0.0017 (5/2935) 0 * Os_TE_498396 Os_TE_498396 Chr2 1311654 1311655 + ORSgTEMT01601591 242 0.0017 (5/2937) 0 * Os_TE_498397 Os_TE_498395 Chr2 1311489 1311490 - COPIA2-LTR_OS 6433 0.0003 (1/2944) 0 * Os_TE_498394 Os_TE_498394 Chr2 1311485 1311484 + COPIA2-LTR_OS 6433 0.0003 (1/2942) 0 * Os_TE_498395 Os_TE_498386 Chr2 1310098 1310099 + ORSgTETNOOT01834 251 0.0396 (118/2979) 0 * Os_TE_498385 Os_TE_498385 Chr2 1310096 1310095 + ORSgTETNOOT01834 251 0.0388 (113/2912) 0 * Os_TE_498386 Os_TE_498382 Chr2 1306918 1306919 - SC-8_LTR 4951 0.0003 (1/2992) 0 * * Os_TE_498377 Chr2 1304863 1304862 - STOWAWAY51_OS 246 0.0007 (2/2992) 0 * * Os_TE_498373 Chr2 1303170 1303171 + MPING 430 0.0003 (1/2985) 0 * Os_TE_498372 Os_TE_498372 Chr2 1303168 1303167 - MPING 430 0.0003 (1/2988) 0 * Os_TE_498373 Os_TE_498357 Chr2 1300865 1300864 + ORSgTEMT00900917 208 0.0017 (5/2970) 0 * * Os_TE_498348 Chr2 1299966 1295114 - OSTE33 1012 0.6683 (1991/2979) 1 Intact Os_TE_498344 Os_TE_498344 Chr2 1295115 1299967 - OSTE33 1012 0.7679 (1959/2551) 1 Intact Os_TE_498348 Os_TE_498340 Chr2 1293468 1293469 - INDITTO 263 0.0017 (5/2974) 0 * * Os_TE_498327 Chr2 1282067 1282066 + STOWAWAY51_OS 246 0.0024 (7/2960) 0 * Os_TE_498326 Os_TE_498326 Chr2 1282061 1282062 - STOWAWAY51_OS 246 0.0027 (8/2971) 0 * Os_TE_498327 Os_TE_498315 Chr2 1270673 1266703 - SZ-35LTR 3853 0.6689 (1992/2978) 1 Intact Os_TE_498309 Os_TE_498309 Chr2 1266703 1270672 + RETROSAT4_LTR 13504 0.6271 (1678/2676) 1 Solo_LTR Os_TE_498315 Os_TE_498304 Chr2 1264905 1264904 - ORSgTEMT01700947 154 0.3346 (990/2959) 0 * * Os_TE_498299 Chr2 1263137 1263136 + STOWAWAY50_OS 174 0.0007 (2/2886) 0 * * Os_TE_498290 Chr2 1260959 1260960 - INDITTO 263 0.0063 (19/2993) 0 * * Os_TE_498289 Chr2 1260843 1260842 - DNAUN1_OS 408 0.3430 (1024/2985) 0 * * Os_TE_498287 Chr2 1260515 1260276 + ORSgTEMT01601934 207 0.6772 (1968/2906) 1 Intact Os_TE_498285 Os_TE_498285 Chr2 1260276 1260515 + ORSgTEMT01600628 237 0.6720 (2002/2979) 1 Intact Os_TE_498287 Os_TE_498283 Chr2 1260180 1260181 - RETROSAT2LTR 12796 0.0144 (35/2428) 0 * * Os_TE_498282 Chr2 1259495 1259494 + CLOUD-4 520 0.3269 (930/2845) 0 * * Os_TE_498281 Chr2 1258818 1258817 + ORSgTETNOOT00032 218 0.0003 (1/2978) 0 * * Os_TE_498280 Chr2 1258288 1252290 - COPIA2-LTR_OS 6433 0.6960 (2017/2898) 1 Intact Os_TE_498279 Os_TE_498279 Chr2 1252068 1258287 - ORSgTERT00100363 6446 0.6784 (2010/2963) 1 Intact Os_TE_498280 Os_TE_498264 Chr2 1249036 1249035 + ORSgTEMT01602119 229 0.0003 (1/2971) 0 * * Os_TE_498263 Chr2 1248978 1248979 - COPI2_LTR 4733 0.0080 (24/2983) 0 * Os_TE_498262 Os_TE_498262 Chr2 1248974 1248973 + COPI2_LTR 4733 0.0087 (26/2988) 0 * Os_TE_498263 Os_TE_498260 Chr2 1248112 1248113 + COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_498259 Os_TE_498259 Chr2 1248108 1248107 - COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_498260 Os_TE_498257 Chr2 1246747 1246748 + COPIA2-LTR_OS 6433 0.0007 (2/2961) 0 * * Os_TE_498254 Chr2 1246292 1246291 - RETRO1_LTR 8314 0.0003 (1/2981) 0 * * Os_TE_498238 Chr2 1235375 1235376 - INDITTO 263 0.0453 (135/2977) 0 * Os_TE_498237 Os_TE_498237 Chr2 1235373 1235372 + ORSgTETNOOT02316 263 0.0469 (139/2966) 0 * Os_TE_498238 Os_TE_498205 Chr2 1212014 1212015 - ORSgTEMT02400246 177 0.0459 (137/2987) 0 * * Os_TE_498197 Chr2 1206120 1206121 - INDITTO 263 0.0003 (1/2977) 0 * Os_TE_498196 Os_TE_498196 Chr2 1206118 1206117 + INDITTO 263 0.0003 (1/2978) 0 * Os_TE_498197 Os_TE_498194 Chr2 1205816 1205817 + MPING 430 0.0003 (1/2921) 0 * * Os_TE_498193 Chr2 1205718 1205719 - GYPSY-A_LTR 8951 0.0481 (142/2955) 0 * Os_TE_498192 Os_TE_498192 Chr2 1205714 1205713 + GYPSY-A_LTR 8951 0.0462 (136/2944) 0 * Os_TE_498193 Os_TE_498188 Chr2 1203621 1203622 - RETRO1_LTR 8314 0.1414 (400/2829) 0 * * Os_TE_498169 Chr2 1189979 1189980 + NDNA1TNA_OS 334 0.1270 (357/2811) 0 * Os_TE_498168 Os_TE_498168 Chr2 1189977 1189976 - NDNA1TNA_OS 334 0.1382 (386/2793) 0 * Os_TE_498169 Os_TE_498167 Chr2 1189932 1189933 - ORSiTETNOOT00134 607 0.0004 (1/2761) 0 * Os_TE_498166 Os_TE_498166 Chr2 1189925 1189924 + TWIF 586 0.0004 (1/2727) 0 * Os_TE_498167 Os_TE_498154 Chr2 1188053 1188052 - DITAIL 271 0.0014 (4/2948) 0 * Os_TE_498153 Os_TE_498153 Chr2 1188052 1188053 + DITAILA 257 0.0017 (5/2954) 0 * Os_TE_498154 Os_TE_498151 Chr2 1187787 1187786 - COPI2_LTR 4733 0.0014 (4/2871) 0 * * Os_TE_498149 Chr2 1187187 1187186 - ORSgTEMT00100799 337 0.1568 (465/2965) 0 * * Os_TE_498148 Chr2 1187186 1187187 - ORSgTEMT00600085 364 0.3473 (1025/2951) 0 * * Os_TE_498135 Chr2 1171823 1171824 - AMYLTP 383 0.3392 (1010/2978) 0 * * Os_TE_498111 Chr2 1157195 1157196 - ORSiTETNOOT00134 607 0.0003 (1/2870) 0 * Os_TE_498110 Os_TE_498110 Chr2 1157188 1157187 + TWIF 586 0.0004 (1/2846) 0 * Os_TE_498111 Os_TE_498095 Chr2 1146574 1146573 + ORSgTEMT01602637 232 0.0241 (72/2988) 0 * * Os_TE_498094 Chr2 1146527 1146526 - MuDR-5_OS 17471 0.0014 (4/2958) 0 * * Os_TE_498092 Chr2 1145183 1145184 - RIRE2_LTR 11306 0.0003 (1/2978) 0 * * Os_TE_498066 Chr2 1141015 1141014 - HARB-1_OS 5166 0.0003 (1/2901) 0 * * Os_TE_498050 Chr2 1134113 1134112 - OSTE24 683 0.0003 (1/2973) 0 * * Os_TE_498047 Chr2 1132747 1132748 - ORSiTERTOOT00441 4741 0.0003 (1/2993) 0 * Os_TE_498046 Os_TE_498046 Chr2 1132743 1132742 + ORSiTERTOOT00441 4741 0.0003 (1/2992) 0 * Os_TE_498047 Os_TE_498043 Chr2 1129747 1129748 - RIREX_LTR 8828 0.0003 (1/2994) 0 * Os_TE_498042 Os_TE_498042 Chr2 1129743 1129742 + RIREX_LTR 8828 0.0003 (1/2994) 0 * Os_TE_498043 Os_TE_498040 Chr2 1128639 1128640 - COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_498039 Os_TE_498039 Chr2 1128635 1128634 + COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_498040 Os_TE_498038 Chr2 1127994 1127995 + COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_498037 Os_TE_498037 Chr2 1127990 1127989 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_498038 Os_TE_498036 Chr2 1126854 1126855 + SC-7_LTR 4431 0.0003 (1/2990) 0 * * Os_TE_498034 Chr2 1124908 1124909 + COPIA2-LTR_OS 6433 0.0034 (10/2962) 0 * Os_TE_498033 Os_TE_498033 Chr2 1124904 1124903 - COPIA2-LTR_OS 6433 0.0037 (11/2959) 0 * Os_TE_498034 Os_TE_498031 Chr2 1123555 1123556 + RIREX_LTR 8828 0.0003 (1/2984) 0 * Os_TE_498030 Os_TE_498030 Chr2 1123551 1123550 - RIREX_LTR 8828 0.0003 (1/2985) 0 * Os_TE_498031 Os_TE_498029 Chr2 1123145 1123146 + MuDR3_OS 8604 0.0003 (1/2998) 0 * Os_TE_498028 Os_TE_498028 Chr2 1123137 1123136 - MuDR3_OS 8604 0.0003 (1/2998) 0 * Os_TE_498029 Os_TE_498027 Chr2 1122997 1122998 - ORSiTERTOOT00367 5639 0.0003 (1/2997) 0 * * Os_TE_497960 Chr2 1102283 1102790 + OSTE20 496 0.4490 (1343/2991) 1 Intact * Os_TE_497952 Chr2 1101453 1101452 - CASTAWAY 364 0.0003 (1/2986) 0 * * Os_TE_497939 Chr2 1098205 1098206 - STOWAWAY51_OS 246 0.0003 (1/2953) 0 * * Os_TE_497938 Chr2 1098029 1098028 - ORSgTEMT00100124 360 0.1212 (352/2904) 0 * Os_TE_497937 Os_TE_497937 Chr2 1098025 1098026 + NDNA1TNA_OS 334 0.1152 (332/2881) 0 * Os_TE_497938 Os_TE_497934 Chr2 1097216 1097217 - AMYLTP 383 0.0007 (2/2844) 0 * Os_TE_497933 Os_TE_497933 Chr2 1097208 1097207 + AMYLTP 383 0.0011 (3/2740) 0 * Os_TE_497934 Os_TE_497889 Chr2 1072873 1072874 - COPI2_LTR 4733 0.0022 (6/2678) 0 * Os_TE_497888 Os_TE_497888 Chr2 1072869 1072868 + COPI2_LTR 4733 0.0020 (6/2986) 0 * Os_TE_497889 Os_TE_497848 Chr2 1055065 1055066 + ORSiTERTOOT00296 5553 0.0003 (1/2991) 0 * Os_TE_497847 Os_TE_497847 Chr2 1055061 1055060 - SC-3_LTR 5748 0.0003 (1/2994) 0 * Os_TE_497848 Os_TE_497837 Chr2 1047148 1047147 - STOWAWAY1_OS 149 0.0003 (1/2992) 0 * Os_TE_497836 Os_TE_497836 Chr2 1047147 1047148 + ORSgTEMT01701663 106 0.0007 (2/2994) 0 * Os_TE_497837 Os_TE_497835 Chr2 1046148 1046149 + STOWAWAY51_OS 246 0.0030 (9/2995) 0 * * Os_TE_497824 Chr2 1036938 1036939 - SC-3_LTR 5748 0.0003 (1/2992) 0 * Os_TE_497823 Os_TE_497823 Chr2 1036934 1036933 + ORSiTERTOOT00296 5553 0.0003 (1/2989) 0 * Os_TE_497824 Os_TE_497818 Chr2 1034871 1034872 + ORSgTETNOOT00908 242 0.3521 (1055/2996) 0 * * Os_TE_497808 Chr2 1031489 1031490 - MPING 430 0.0003 (1/2990) 0 * Os_TE_497807 Os_TE_497807 Chr2 1031487 1031486 + MPING 430 0.0003 (1/2994) 0 * Os_TE_497808 Os_TE_497804 Chr2 1031102 1031101 - F770 284 0.0070 (21/2986) 0 * * Os_TE_497803 Chr2 1029831 1029582 + ORSgTEMT00901844 250 0.8730 (2572/2946) 1 Intact * Os_TE_497766 Chr2 1016439 1016440 - ORSgTEMT00500675 140 0.0017 (5/2991) 0 * * Os_TE_497764 Chr2 1016392 1016391 - RIREX_LTR 8828 0.0003 (1/2988) 0 * * Os_TE_497759 Chr2 1013566 1013567 - ORSgTEMT00500675 140 0.0388 (112/2886) 0 * Os_TE_497758 Os_TE_497758 Chr2 1013564 1013563 - ORSgTEMT00501447 126 0.0409 (119/2913) 0 * Os_TE_497759 Os_TE_497755 Chr2 1012292 1012291 + STOWAWAY21_OS 243 0.0061 (18/2946) 0 * * Os_TE_497732 Chr2 995899 995900 - SC-7_LTR 4431 0.0005 (1/1847) 0 * * Os_TE_497730 Chr2 994890 994889 + SZ-55_LTR 10318 0.0005 (1/1877) 0 * * Os_TE_497729 Chr2 994571 994572 - ORSiTERT00200154 9386 0.3153 (840/2664) 0 * * Os_TE_497720 Chr2 987820 987819 + SZ-55_LTR 10318 0.0004 (1/2665) 0 * * Os_TE_497710 Chr2 985041 985042 + RIREX_LTR 8828 0.0007 (2/2683) 0 * Os_TE_497709 Os_TE_497709 Chr2 985037 985036 - RIREX_LTR 8828 0.0007 (2/2683) 0 * Os_TE_497710 Os_TE_497692 Chr2 976679 976680 + TELIA 141 0.0007 (2/2736) 0 * Os_TE_497691 Os_TE_497691 Chr2 976676 976675 - TELIA 141 0.0008 (2/2638) 0 * Os_TE_497692 Os_TE_497689 Chr2 976291 976290 - ORSgTEMT01600750 238 0.0378 (105/2776) 0 * * Os_TE_497687 Chr2 975802 975801 - SZ-17_LTR 3387 0.0004 (1/2786) 0 * * Os_TE_497677 Chr2 972698 972697 - SZ-35LTR 3853 0.3535 (983/2781) 0 * * Os_TE_497666 Chr2 961470 955916 + MuDR3_OS 8604 0.4582 (1354/2955) 1 Intact Os_TE_497663 Os_TE_497663 Chr2 955916 961466 - MuDR3_OS 8604 0.4513 (1324/2934) 1 Intact Os_TE_497666 Os_TE_497662 Chr2 955419 955418 + ORSgTEMT00500575 143 0.0017 (5/2990) 0 * Os_TE_497661 Os_TE_497661 Chr2 955412 955413 + ORSgTEMT00502215 139 0.0017 (5/2992) 0 * Os_TE_497662 Os_TE_497659 Chr2 953875 953876 + SC-8_LTR 4951 0.0003 (1/2997) 0 * Os_TE_497658 Os_TE_497658 Chr2 953871 953870 - SC-8_LTR 4951 0.0003 (1/2996) 0 * Os_TE_497659 Os_TE_497650 Chr2 950275 950274 + ORSgTEMT01601591 242 0.0003 (1/2945) 0 * * Os_TE_497642 Chr2 948032 948031 - OLO24C 356 0.0007 (2/2982) 0 * * Os_TE_497641 Chr2 946821 946822 - TOURIST-XI 219 0.1056 (313/2964) 0 * Os_TE_497640 Os_TE_497640 Chr2 946816 946815 - ORSgTETNOOT00591 258 0.1049 (311/2964) 0 * Os_TE_497641 Os_TE_497630 Chr2 943949 943950 + STOLA 369 0.0017 (5/2981) 0 * * Os_TE_497628 Chr2 943790 943789 - ORSgTETNOOT00544 147 0.1063 (315/2962) 0 * * Os_TE_497621 Chr2 942674 942675 + DS-RICE2N 613 0.0075 (20/2666) 0 * Os_TE_497620 Os_TE_497620 Chr2 942667 942666 - DS-RICE2N 613 0.0068 (18/2636) 0 * Os_TE_497621 Os_TE_497601 Chr2 923956 923957 - STOWAWAY43_OS 233 0.0013 (4/2989) 0 * * Os_TE_497583 Chr2 916054 916055 + OSTE33 1012 0.0010 (3/2929) 0 * * Os_TE_497579 Chr2 915727 915726 + TRSA_OS 353 0.0004 (1/2849) 0 * * Os_TE_497574 Chr2 915088 915087 + NDNA1TNA_OS 334 0.0004 (1/2824) 0 * * Os_TE_497572 Chr2 914817 914816 + ORSgTEMT00901780 248 0.0011 (3/2788) 0 * Os_TE_497571 Os_TE_497571 Chr2 914813 914814 + ORSgTEMT00901798 232 0.0004 (1/2783) 0 * Os_TE_497572 Os_TE_497559 Chr2 913470 913471 - INDITTO 263 0.0721 (214/2970) 0 * * Os_TE_497544 Chr2 912182 912183 - STOWAWAY12_OS 312 0.0003 (1/2965) 0 * * Os_TE_497543 Chr2 912034 912035 + ORSgTEMT00700017 386 0.0003 (1/2989) 0 * * Os_TE_497538 Chr2 906367 906368 - MPING 430 0.0003 (1/2972) 0 * Os_TE_497537 Os_TE_497537 Chr2 906365 906364 + MPING 430 0.0003 (1/2972) 0 * Os_TE_497538 Os_TE_497536 Chr2 905836 905835 + SETARIA2 1142 0.0003 (1/2971) 0 * * Os_TE_497506 Chr2 888724 888723 + RETROSAT2LTR 12796 0.0977 (278/2845) 0 * * Os_TE_497498 Chr2 887902 887901 + STOWAWAY51_OS 246 0.0010 (3/2985) 0 * Os_TE_497497 Os_TE_497497 Chr2 887896 887897 + ORSgTEMT01601591 242 0.0015 (4/2677) 0 * Os_TE_497498 Os_TE_497487 Chr2 879388 879389 + MuDR3_OS 8604 0.5940 (1665/2803) 0 * Os_TE_497486 Os_TE_497486 Chr2 879380 879379 - MuDR3_OS 8604 0.5979 (1692/2830) 0 * Os_TE_497487 Os_TE_497485 Chr2 878593 878592 + TWIFB1 3737 0.0003 (1/2994) 0 * * Os_TE_497483 Chr2 875626 875627 - CENTRE 280 0.0050 (15/2996) 0 * * Os_TE_497481 Chr2 874296 874957 + TWIFB1 3737 0.3504 (1028/2934) 1 Intact * Os_TE_497465 Chr2 859933 859934 + TWIF 586 0.0003 (1/2993) 0 * Os_TE_497464 Os_TE_497464 Chr2 859926 859925 - ORSiTETNOOT00134 607 0.0003 (1/2996) 0 * Os_TE_497465 Os_TE_497463 Chr2 857995 857996 - SC-3_LTR 5748 0.0013 (4/2995) 0 * Os_TE_497462 Os_TE_497462 Chr2 857991 857990 + ORSiTERTOOT00296 5553 0.0013 (4/2995) 0 * Os_TE_497463 Os_TE_497447 Chr2 850408 853565 + RETROSAT2LTR 12796 0.3511 (1020/2905) 1 Solo_LTR * Os_TE_497446 Chr2 848529 848530 - RETROSAT3_LTR 11537 0.0084 (25/2991) 0 * * Os_TE_497442 Chr2 845338 845337 + TRUNCATOR 2918 0.3211 (956/2977) 0 * Os_TE_497441 Os_TE_497441 Chr2 845337 845338 - TRUNCATOR 2918 0.2848 (816/2865) 0 * Os_TE_497442 Os_TE_497419 Chr2 836793 836794 + COPI2_LTR 4733 0.0007 (2/2983) 0 * Os_TE_497418 Os_TE_497418 Chr2 836789 836788 - COPI2_LTR 4733 0.0007 (2/2975) 0 * Os_TE_497419 Os_TE_497404 Chr2 832364 832365 + OSTONOR1_LTR 6440 0.2120 (610/2878) 0 * Os_TE_497403 Os_TE_497403 Chr2 832360 832359 - ORSiTERT00100062 5674 0.2349 (690/2938) 0 * Os_TE_497404 Os_TE_497338 Chr2 802036 802037 + OSTE33 1012 0.0037 (11/2968) 0 * Os_TE_497337 Os_TE_497337 Chr2 802027 802026 + OSTE33 1012 0.0030 (9/2966) 0 * Os_TE_497338 Os_TE_497323 Chr2 800017 800018 - LINE-6_OS 4886 0.0004 (1/2737) 0 * * Os_TE_497296 Chr2 789053 789052 + HELITRON2_OS 15167 0.1957 (586/2994) 0 * Os_TE_497295 Os_TE_497295 Chr2 789052 789053 - HELITRON2_OS 15167 0.1995 (597/2993) 0 * Os_TE_497296 Os_TE_497272 Chr2 777380 777381 + F770 284 0.0328 (98/2984) 0 * Os_TE_497271 Os_TE_497271 Chr2 777378 777377 - F770 284 0.0331 (99/2988) 0 * Os_TE_497272 Os_TE_497269 Chr2 776956 776957 + ORSgTETNOOT01834 251 0.0833 (247/2965) 0 * * Os_TE_497255 Chr2 774426 774427 - RIREX_LTR 8828 0.0450 (134/2979) 0 * * Os_TE_497253 Chr2 773863 773864 - COPIA2-LTR_OS 6433 0.0027 (8/2987) 0 * Os_TE_497252 Os_TE_497252 Chr2 773859 773858 + COPIA2-LTR_OS 6433 0.0023 (7/2992) 0 * Os_TE_497253 Os_TE_497251 Chr2 773040 773039 - STOWAWAY51_OS 246 0.0003 (1/2999) 0 * * Os_TE_497120 Chr2 712623 712624 - SZ-25LTR 330 0.0014 (4/2881) 0 * Os_TE_497119 Os_TE_497119 Chr2 712619 712618 + COPI1_LTR 4721 0.0013 (4/2992) 0 * Os_TE_497120 Os_TE_497107 Chr2 708700 708701 + INDITTO 263 0.0011 (2/1806) 0 * Os_TE_497106 Os_TE_497106 Chr2 708698 708697 - INDITTO 263 0.0011 (2/1825) 0 * Os_TE_497107 Os_TE_497105 Chr2 708656 708657 - OLO24 345 0.1945 (351/1805) 0 * Os_TE_497104 Os_TE_497104 Chr2 708654 708653 + OLO24 345 0.1876 (337/1796) 0 * Os_TE_497105 Os_TE_497027 Chr2 686631 686630 + NDNA1TNA_OS 334 0.0006 (1/1558) 0 * * Os_TE_497025 Chr2 684167 684168 - ORSgTEMT01800062 435 0.0006 (1/1646) 0 * Os_TE_497024 Os_TE_497024 Chr2 684164 684163 + TNR8-1 418 0.0006 (1/1644) 0 * Os_TE_497025 Os_TE_497018 Chr2 683595 683596 - MUDRN3_OS 903 0.0006 (1/1626) 0 * Os_TE_497017 Os_TE_497017 Chr2 683587 683586 - MUDRN3_OS 903 0.0006 (1/1626) 0 * Os_TE_497018 Os_TE_497014 Chr2 682797 682796 + OSTE15 1168 0.0006 (1/1644) 0 * * Os_TE_497006 Chr2 681544 681545 + AMYLTP 383 0.0015 (4/2605) 0 * * Os_TE_496960 Chr2 657376 657375 + SINE1OS 127 0.0260 (77/2965) 0 * * Os_TE_496959 Chr2 655220 655219 - HARB-1_OS 5166 0.0003 (1/2995) 0 * * Os_TE_496955 Chr2 652859 652858 - ORSgTEMT01600639 228 0.0285 (85/2984) 0 * Os_TE_496954 Os_TE_496954 Chr2 652856 652857 - ORSgTEMT01601208 238 0.0235 (70/2974) 0 * Os_TE_496955 Os_TE_496930 Chr2 629602 629603 - RIREX_LTR 8828 0.0031 (9/2939) 0 * Os_TE_496929 Os_TE_496929 Chr2 629598 629597 + RIREX_LTR 8828 0.0031 (9/2939) 0 * Os_TE_496930 Os_TE_496913 Chr2 618378 617949 - MPING 430 0.0110 (33/2995) 0.94 Intact Os_TE_496912 Os_TE_496912 Chr2 617949 618378 + MPING 430 0.0117 (35/2989) 1 Intact Os_TE_496913 Os_TE_496909 Chr2 617615 617839 - ORSgTEMT02400246 177 0.3677 (1096/2981) 1 Intact * Os_TE_496834 Chr2 570545 570546 - AMYLTP 383 0.0017 (5/2989) 0 * Os_TE_496833 Os_TE_496833 Chr2 570537 570536 + AMYLTP 383 0.0017 (5/2989) 0 * Os_TE_496834 Os_TE_496777 Chr2 551957 551956 - RIREX_LTR 8828 0.0004 (1/2783) 0 * * Os_TE_496776 Chr2 551159 551158 - SC-7_LTR 4431 0.0004 (1/2473) 0 * * Os_TE_496775 Chr2 550805 550806 - COPIA2-LTR_OS 6433 0.0003 (1/2982) 0 * * Os_TE_496771 Chr2 549125 549126 - RIREX_LTR 8828 0.0003 (1/2951) 0 * Os_TE_496770 Os_TE_496770 Chr2 549121 549120 + RIREX_LTR 8828 0.0003 (1/2957) 0 * Os_TE_496771 Os_TE_496769 Chr2 548408 548192 + ORSgTETNOOT01219 231 0.4442 (1325/2983) 1 Intact Os_TE_496768 Os_TE_496768 Chr2 548164 548414 + ORSgTETNOOT00908 242 0.4443 (1327/2987) 1 Intact Os_TE_496769 Os_TE_496766 Chr2 544956 544957 - SC-3_LTR 5748 0.0003 (1/2993) 0 * Os_TE_496765 Os_TE_496765 Chr2 544953 544952 + ORSiTERTOOT00296 5553 0.0003 (1/2984) 0 * Os_TE_496766 Os_TE_496745 Chr2 517266 517267 + TWIF 586 0.0003 (1/2989) 0 * Os_TE_496744 Os_TE_496744 Chr2 517259 517258 - ORSiTETNOOT00134 607 0.0003 (1/2985) 0 * Os_TE_496745 Os_TE_496739 Chr2 512260 512261 + ORSiTERTOOT00296 5553 0.0003 (1/2983) 0 * Os_TE_496738 Os_TE_496738 Chr2 512256 512255 - SC-3_LTR 5748 0.0003 (1/2984) 0 * Os_TE_496739 Os_TE_496732 Chr2 508078 508079 - INDITTO 263 0.0308 (90/2921) 0 * Os_TE_496731 Os_TE_496731 Chr2 508076 508075 + INDITTO 263 0.0321 (94/2931) 0 * Os_TE_496732 Os_TE_496720 Chr2 505178 504870 + ORSgTEMT00100531 325 0.5540 (1657/2991) 1 Intact * Os_TE_496694 Chr2 488888 488889 + ORSgTETNOOT00908 242 0.0003 (1/2988) 0 * * Os_TE_496691 Chr2 488194 488195 - COPI2_LTR 4733 0.0013 (4/2998) 0 * Os_TE_496690 Os_TE_496690 Chr2 488190 488189 + COPI2_LTR 4733 0.0013 (4/2998) 0 * Os_TE_496691 Os_TE_496689 Chr2 488026 488027 - CACTA-H 1152 0.0010 (3/2999) 0 * * Os_TE_496606 Chr2 450441 450440 - STOWAWAY12_OS 312 0.0007 (2/2952) 0 * * Os_TE_496600 Chr2 449949 449948 - COPIA2-LTR_OS 6433 0.0003 (1/2980) 0 * * Os_TE_496523 Chr2 424766 424765 - STOWAWAY51_OS 246 0.0004 (1/2484) 0 * * Os_TE_496520 Chr2 421057 421058 + OSR42_LTR 5605 0.0007 (2/2998) 0 * Os_TE_496519 Os_TE_496519 Chr2 421053 421052 - OSR42_LTR 5605 0.0007 (2/2999) 0 * Os_TE_496520 Os_TE_496503 Chr2 408881 408882 + ORSgTEMT01602181 239 0.0013 (4/2992) 0 * * Os_TE_496501 Chr2 406006 406007 - RIREX_LTR 8828 0.0003 (1/2997) 0 * Os_TE_496500 Os_TE_496500 Chr2 406002 406001 + RIREX_LTR 8828 0.0003 (1/2972) 0 * Os_TE_496501 Os_TE_496497 Chr2 405187 405188 - KIDDOD 279 0.0020 (5/2451) 0 * * Os_TE_496471 Chr2 389177 389176 + OSTONOR1_LTR 6440 0.0010 (3/2963) 0 * * Os_TE_496468 Chr2 388051 388052 - RIREX_LTR 8828 0.0003 (1/2995) 0 * * Os_TE_496464 Chr2 387563 387564 - ORSgTEMT01601493 303 0.0097 (29/2991) 0 * * Os_TE_496462 Chr2 387176 387175 + ORSgTEMT01602051 240 0.0087 (26/2987) 0 * Os_TE_496461 Os_TE_496461 Chr2 387173 387174 - TREP215 239 0.0100 (30/2988) 0 * Os_TE_496462 Os_TE_496456 Chr2 385309 385308 - ORSgTEMT00900025 250 0.0087 (26/2994) 0 * * Os_TE_496455 Chr2 385267 385266 + ORSgTEMT01601591 242 0.0003 (1/2986) 0 * * Os_TE_496452 Chr2 384810 384811 + MERMITEH 1307 0.3003 (895/2980) 0 * Os_TE_496451 Os_TE_496451 Chr2 384801 384800 + MERMITEA 1710 0.3051 (902/2956) 0 * Os_TE_496452 Os_TE_496441 Chr2 354616 354617 + RIREX_LTR 8828 0.0008 (2/2479) 0 * * Os_TE_496435 Chr2 347707 347708 + RETROSAT4_LTR 13504 0.0013 (4/2993) 0 * Os_TE_496434 Os_TE_496434 Chr2 347703 347702 - Cassandra_OS-LTR 764 0.0013 (4/2966) 0 * Os_TE_496435 Os_TE_496431 Chr2 346510 346511 - SC-3_LTR 5748 0.0003 (1/2996) 0 * Os_TE_496430 Os_TE_496430 Chr2 346506 346505 + ORSiTERTOOT00296 5553 0.0003 (1/2995) 0 * Os_TE_496431 Os_TE_496424 Chr2 343827 343828 - ORSgTEMT01400012 212 0.0014 (4/2937) 0 * * Os_TE_496399 Chr2 333126 333127 + RIREX_LTR 8828 0.0003 (1/2992) 0 * Os_TE_496398 Os_TE_496398 Chr2 333122 333121 - RIREX_LTR 8828 0.0003 (1/2994) 0 * Os_TE_496399 Os_TE_496396 Chr2 331915 320584 - RIRE2_LTR 11306 0.5239 (1568/2993) 1 Intact Os_TE_496392 Os_TE_496392 Chr2 320584 331915 - ORSgTERT00201216 11284 0.5279 (1579/2991) 1 Intact Os_TE_496396 Os_TE_496391 Chr2 320574 320575 - DS-RICE2N 613 0.0010 (3/2992) 0 * * Os_TE_496390 Chr2 320067 320068 - COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * * Os_TE_496372 Chr2 310466 310467 + STOWAWAY51_OS 246 0.0013 (4/2993) 0 * Os_TE_496371 Os_TE_496371 Chr2 310462 310461 - OLO24 345 0.0003 (1/2987) 0 * Os_TE_496372 Os_TE_496365 Chr2 307123 307124 - SZ-25LTR 330 0.0017 (5/2980) 0 * Os_TE_496364 Os_TE_496364 Chr2 307120 307119 + ORSiTERT00100071 4657 0.0017 (5/2985) 0 * Os_TE_496365 Os_TE_496352 Chr2 303219 303432 - ORSgTETNOOT00896 235 0.5244 (1569/2992) 1 Intact * Os_TE_496321 Chr2 286111 286112 - SC-8_LTR 4951 0.0003 (1/2940) 0 * Os_TE_496320 Os_TE_496320 Chr2 286107 286106 + SC-8_LTR 4951 0.0003 (1/2951) 0 * Os_TE_496321 Os_TE_496298 Chr2 271695 271694 - RETROSAT4_LTR 13504 0.0017 (5/2999) 0 * * Os_TE_496294 Chr2 270328 270327 + COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * * Os_TE_496292 Chr2 265863 265864 + SZ-4_LTR 5991 0.0003 (1/2934) 0 * * Os_TE_496270 Chr2 248814 248575 + TREP215 239 0.5200 (1550/2981) 1 Intact * Os_TE_496266 Chr2 248278 248277 + ENSPM4_OS 11610 0.0012 (2/1623) 0 * * Os_TE_496265 Chr2 246603 246604 + SZLTR 1249 0.0007 (2/2908) 0 * Os_TE_496264 Os_TE_496264 Chr2 246599 246598 - SZLTR 1249 0.0007 (2/2921) 0 * Os_TE_496265 Os_TE_496242 Chr2 228199 228200 + AMYLTP 383 0.0370 (111/2997) 0 * Os_TE_496241 Os_TE_496241 Chr2 228191 228190 - AMYLTP 383 0.0348 (104/2992) 0 * Os_TE_496242 Os_TE_496222 Chr2 219022 219023 - RIREX_LTR 8828 0.0007 (2/2974) 0 * Os_TE_496221 Os_TE_496221 Chr2 219018 219017 + RIREX_LTR 8828 0.0007 (2/2979) 0 * Os_TE_496222 Os_TE_496219 Chr2 217509 217510 - MPING 430 0.0017 (5/2989) 0 * Os_TE_496218 Os_TE_496218 Chr2 217507 217506 + MPING 430 0.0013 (4/2988) 0 * Os_TE_496219 Os_TE_496217 Chr2 217406 217407 - MPING 430 0.0003 (1/2976) 0 * Os_TE_496216 Os_TE_496216 Chr2 217404 217403 + MPING 430 0.0003 (1/2984) 0 * Os_TE_496217 Os_TE_496214 Chr2 216289 216290 - ORSgTEMT00900099 250 0.0010 (3/2927) 0 * * Os_TE_496208 Chr2 214866 214437 - MPING 430 0.0107 (32/2998) 1 Intact Os_TE_496207 Os_TE_496207 Chr2 214437 214866 + MPING 430 0.0104 (31/2992) 1 Intact Os_TE_496208 Os_TE_496204 Chr2 213399 213398 - COPIA2-LTR_OS 6433 0.0003 (1/2941) 0 * * Os_TE_496184 Chr2 205212 205211 + ORSgTEMT01600196 241 0.4453 (1331/2989) 0 * Os_TE_496183 Os_TE_496183 Chr2 205206 205207 - TREP215 239 0.4495 (1345/2992) 0 * Os_TE_496184 Os_TE_496180 Chr2 203983 203984 + AMYLTP 383 0.0003 (1/2982) 0 * Os_TE_496179 Os_TE_496179 Chr2 203975 203974 - AMYLTP 383 0.0003 (1/2981) 0 * Os_TE_496180 Os_TE_496178 Chr2 203926 203927 + SZ-55_LTR 10318 0.0003 (1/2986) 0 * Os_TE_496177 Os_TE_496177 Chr2 203922 203921 - SZ-55_LTR 10318 0.0003 (1/2984) 0 * Os_TE_496178 Os_TE_496169 Chr2 200475 200474 - ORSgTEMT01601696 238 0.0010 (3/2885) 0 * Os_TE_496168 Os_TE_496168 Chr2 200472 200473 - ORSgTEMT01601493 303 0.0010 (3/2896) 0 * Os_TE_496169 Os_TE_496115 Chr2 179121 179120 + ORSgTEMT00500989 146 0.0003 (1/2994) 0 * * Os_TE_496109 Chr2 176535 176536 + ORSiTERTOOT00167 1524 0.0013 (4/2993) 0 * * Os_TE_496084 Chr2 158633 158632 + STOWAWAY51_OS 246 0.0003 (1/2887) 0 * * Os_TE_496056 Chr2 144888 138439 + COPIA2-LTR_OS 6433 0.4780 (1411/2952) 1 Intact Os_TE_496054 Os_TE_496054 Chr2 138439 144888 - COPIA2-LTR_OS 6433 0.5453 (1458/2674) 1 Intact Os_TE_496056 Os_TE_496035 Chr2 126797 126796 + CASTAWAY 364 0.5290 (1585/2996) 0 * * Os_TE_495985 Chr2 112557 112558 - COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * Os_TE_495984 Os_TE_495984 Chr2 112553 112552 + COPIA2-LTR_OS 6433 0.0007 (1/1427) 0 * Os_TE_495985 Os_TE_495983 Chr2 112404 112403 + STOWAWAY51_OS 246 0.0158 (47/2976) 0 * Os_TE_495982 Os_TE_495982 Chr2 112398 112399 + ORSgTEMT01601591 242 0.0162 (48/2962) 0 * Os_TE_495983 Os_TE_495981 Chr2 112245 112246 - INDITTO 263 0.0003 (1/2999) 0 * Os_TE_495980 Os_TE_495980 Chr2 112243 112242 + INDITTO 263 0.0003 (1/2999) 0 * Os_TE_495981 Os_TE_495976 Chr2 110482 110483 + AMYLTP 383 0.0003 (1/2971) 0 * * Os_TE_495970 Chr2 106594 106595 + ORSiTERTOOT00296 5553 0.0003 (1/2996) 0 * Os_TE_495969 Os_TE_495969 Chr2 106590 106589 - SC-3_LTR 5748 0.0003 (1/2993) 0 * Os_TE_495970 Os_TE_495968 Chr2 105394 105395 - SC-8_LTR 4951 0.0071 (21/2973) 0 * Os_TE_495967 Os_TE_495967 Chr2 105390 105389 + SC-8_LTR 4951 0.0074 (22/2972) 0 * Os_TE_495968 Os_TE_495959 Chr2 101950 101951 - SC-8_LTR 4951 0.0061 (18/2941) 0 * Os_TE_495958 Os_TE_495958 Chr2 101946 101945 + SC-8_LTR 4951 0.0061 (18/2947) 0 * Os_TE_495959 Os_TE_495951 Chr2 94246 94247 - SC-8_LTR 4951 0.0017 (5/2992) 0 * * Os_TE_495923 Chr2 82789 82788 - RIREX_LTR 8828 0.0027 (8/2993) 0 * * Os_TE_495916 Chr2 79255 79256 - COPI2_LTR 4733 0.0003 (1/2988) 0 * * Os_TE_495912 Chr2 77351 77350 + STOWAWAY51_OS 246 0.0007 (2/2957) 0 * * Os_TE_495911 Chr2 77345 77346 - COPI2_LTR 4733 0.0010 (3/2963) 0 * Os_TE_495910 Os_TE_495910 Chr2 77341 77340 + COPI2_LTR 4733 0.0014 (4/2962) 0 * Os_TE_495911 Os_TE_495899 Chr2 75816 75815 - STOWAWAY44_OS 240 0.0010 (3/2992) 0 * Os_TE_495898 Os_TE_495898 Chr2 75813 75814 - STOWAWAY44_OS 240 0.0010 (3/2995) 0 * Os_TE_495899 Os_TE_495896 Chr2 75694 75693 - RIREX_LTR 8828 0.0003 (1/2987) 0 * * Os_TE_495890 Chr2 74794 74793 - RETRO2A_LTR 12895 0.0010 (3/2967) 0 * * Os_TE_495863 Chr2 69961 69962 - ORSgTERT00201216 11284 0.0003 (1/2955) 0 * * Os_TE_495816 Chr2 56768 56769 - COPIA2-LTR_OS 6433 0.0117 (35/2992) 0 * * Os_TE_495807 Chr2 55205 55206 - OLO24 345 0.0003 (1/2994) 0 * Os_TE_495806 Os_TE_495806 Chr2 55203 55202 + OLO24 345 0.0003 (1/2995) 0 * Os_TE_495807 Os_TE_495805 Chr2 53066 53067 - SC-3_LTR 5748 0.0007 (2/2993) 0 * Os_TE_495804 Os_TE_495804 Chr2 53062 53061 + ORSiTERTOOT00296 5553 0.0007 (2/2994) 0 * Os_TE_495805 Os_TE_495785 Chr2 45367 45368 + MERMITE18B 1306 0.0003 (1/2902) 0 * * Os_TE_495762 Chr2 34307 34308 + TWIFB1 3737 0.0097 (29/2994) 0 * * Os_TE_495760 Chr2 34153 34152 + ORSgTETNOOT01313 249 0.0104 (31/2994) 0 * Os_TE_495759 Os_TE_495759 Chr2 34149 34150 + ORSgTETNOOT01834 251 0.0120 (36/2998) 0 * Os_TE_495760 Os_TE_495731 Chr2 16823 16824 - OSTE17 734 0.0124 (37/2986) 0 * Os_TE_495730 Os_TE_495730 Chr2 16815 16814 - OSTE17 734 0.0114 (34/2985) 0 * Os_TE_495731 Os_TE_641766 Chr12 27512460 27512461 + RIREX_LTR 8828 0.0007 (2/2969) 0 * Os_TE_641765 Os_TE_641765 Chr12 27512456 27512455 - RIREX_LTR 8828 0.0007 (2/2971) 0 * Os_TE_641766 Os_TE_641761 Chr12 27511089 27511088 - COPI2_LTR 4733 0.0007 (2/2700) 0 * * Os_TE_641743 Chr12 27507739 27507740 - SC-8_LTR 4951 0.0003 (1/2982) 0 * Os_TE_641742 Os_TE_641742 Chr12 27507735 27507734 + SC-8_LTR 4951 0.0003 (1/2982) 0 * Os_TE_641743 Os_TE_641736 Chr12 27505176 27505175 - COPIA2-LTR_OS 6433 0.0010 (3/2988) 0 * * Os_TE_641717 Chr12 27494136 27494374 - ORSgTEMT01601432 239 0.3168 (931/2939) 1 Intact * Os_TE_641716 Chr12 27493368 27493130 - ORSgTEMT01601432 239 0.0918 (203/2211) 1 Intact Os_TE_641715 Os_TE_641715 Chr12 27493130 27493368 + ORSgTEMT01602181 239 0.3296 (978/2967) 1 Intact Os_TE_641716 Os_TE_641713 Chr12 27491383 27491384 - COPI2_LTR 4733 0.0017 (5/2974) 0 * Os_TE_641712 Os_TE_641712 Chr12 27491379 27491378 + COPI2_LTR 4733 0.0013 (4/2973) 0 * Os_TE_641713 Os_TE_641710 Chr12 27488903 27488904 - SC-8_LTR 4951 0.0020 (6/2997) 0 * Os_TE_641709 Os_TE_641709 Chr12 27488899 27488898 + SC-8_LTR 4951 0.0020 (6/2998) 0 * Os_TE_641710 Os_TE_641703 Chr12 27487473 27487474 + SC-4_LTR 5218 0.0003 (1/2992) 0 * * Os_TE_641692 Chr12 27479867 27479868 - SC-3_LTR 5748 0.0003 (1/2988) 0 * Os_TE_641691 Os_TE_641691 Chr12 27479863 27479862 + ORSiTERTOOT00296 5553 0.0003 (1/2990) 0 * Os_TE_641692 Os_TE_641679 Chr12 27472955 27472956 + MUDRN5_OS 374 0.0068 (20/2958) 0 * Os_TE_641678 Os_TE_641678 Chr12 27472954 27472953 - ORSgTEMT00700002 381 0.0068 (20/2960) 0 * Os_TE_641679 Os_TE_641675 Chr12 27472377 27472378 - MPING 430 0.0007 (2/2939) 0 * Os_TE_641674 Os_TE_641674 Chr12 27472375 27472374 + MPING 430 0.0003 (1/2868) 0 * Os_TE_641675 Os_TE_641668 Chr12 27468699 27468700 - ORSgTEMT00900075 250 0.0003 (1/2915) 0 * * Os_TE_641657 Chr12 27466903 27466902 - SC-8_LTR 4951 0.0027 (8/2989) 0 * * Os_TE_641653 Chr12 27465467 27465323 + TNR2A 152 0.3824 (1005/2628) 1 Intact * Os_TE_641650 Chr12 27460994 27460995 + SPMLIKE 10989 0.0017 (5/2960) 0 * Os_TE_641649 Os_TE_641649 Chr12 27460992 27460991 - ORSgTETN00200001 10994 0.0017 (5/2951) 0 * Os_TE_641650 Os_TE_641645 Chr12 27458961 27455080 - SZ-35LTR 3853 0.3492 (968/2772) 1 Intact Os_TE_641641 Os_TE_641641 Chr12 27455080 27458961 + RETROSAT4_LTR 13504 0.3306 (900/2722) 1 Solo_LTR Os_TE_641645 Os_TE_641634 Chr12 27451736 27451735 + COPI2_LTR 4733 0.0003 (1/2990) 0 * * Os_TE_641622 Chr12 27445536 27445537 - SZ-17_LTR 3387 0.0003 (1/2985) 0 * Os_TE_641621 Os_TE_641621 Chr12 27445532 27445531 + SZ-17_LTR 3387 0.0003 (1/2984) 0 * Os_TE_641622 Os_TE_641598 Chr12 27431229 27431230 - SC-8_LTR 4951 0.0057 (17/2997) 0 * Os_TE_641597 Os_TE_641597 Chr12 27431225 27431224 + SC-8_LTR 4951 0.0057 (17/2998) 0 * Os_TE_641598 Os_TE_641572 Chr12 27424889 27424888 + SEVERIN-2 1952 0.0017 (5/2967) 0 * * Os_TE_641552 Chr12 27415807 27415808 + ORSgTETNOOT01690 244 0.0013 (4/2994) 0 * Os_TE_641551 Os_TE_641551 Chr12 27415805 27415804 - ORSgTETNOOT02417 265 0.0014 (4/2852) 0 * Os_TE_641552 Os_TE_641550 Chr12 27415703 27415704 - ORSgTEMT02400179 221 0.0003 (1/2961) 0 * Os_TE_641549 Os_TE_641549 Chr12 27415702 27415701 - TYPEM 227 0.0003 (1/2982) 0 * Os_TE_641550 Os_TE_641532 Chr12 27412236 27412235 + ORSgTEMT00700017 386 0.0003 (1/2932) 0 * * Os_TE_641504 Chr12 27405026 27405025 - COPIA2-LTR_OS 6433 0.0007 (2/2949) 0 * * Os_TE_641490 Chr12 27403887 27403886 + ORSgTEMT00500512 153 0.0014 (4/2901) 0 * * Os_TE_641486 Chr12 27403319 27403320 + TWIFB1 3737 0.0004 (1/2802) 0 * * Os_TE_641480 Chr12 27394675 27394676 - COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_641479 Os_TE_641479 Chr12 27394671 27394670 + COPI2_LTR 4733 0.0003 (1/2997) 0 * Os_TE_641480 Os_TE_641478 Chr12 27394596 27394597 + COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_641477 Os_TE_641477 Chr12 27394592 27394591 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_641478 Os_TE_641472 Chr12 27387537 27387538 - COPI2_LTR 4733 0.0003 (1/2993) 0 * * Os_TE_641464 Chr12 27382961 27383159 - ORSgTEMT02000041 194 0.3352 (1002/2989) 1 Intact * Os_TE_641448 Chr12 27367730 27367731 - Cassandra_OS-LTR 764 0.6320 (1877/2970) 0 * Os_TE_641447 Os_TE_641447 Chr12 27367727 27367726 + RETROSAT4_LTR 13504 0.5955 (1631/2739) 0 * Os_TE_641448 Os_TE_641439 Chr12 27365431 27365432 - INDITTO 263 0.0287 (85/2962) 0 * * Os_TE_641400 Chr12 27346456 27346455 - STOWAWAY44_OS 240 0.0067 (20/2993) 0 * Os_TE_641399 Os_TE_641399 Chr12 27346453 27346454 + STOWAWAY44_OS 240 0.0064 (19/2983) 0 * Os_TE_641400 Os_TE_641383 Chr12 27336253 27336254 - ORSiTERTOOT00367 5639 0.0010 (3/2991) 0 * Os_TE_641382 Os_TE_641382 Chr12 27336249 27336248 + ORSiTERTOOT00367 5639 0.0007 (2/2990) 0 * Os_TE_641383 Os_TE_641381 Chr12 27335003 27335004 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * * Os_TE_641370 Chr12 27333173 27333174 - RIREX_LTR 8828 0.0090 (27/2986) 0 * * Os_TE_641359 Chr12 27326163 27326164 - ORSiTETNOOT00134 607 0.0003 (1/2995) 0 * Os_TE_641358 Os_TE_641358 Chr12 27326156 27326155 + TWIF 586 0.0003 (1/2995) 0 * Os_TE_641359 Os_TE_641338 Chr12 27317075 27317076 - ORSiTERTOOT00367 5639 0.0043 (13/2996) 0 * * Os_TE_641334 Chr12 27312623 27316856 + EnSpm-N1_OS 4256 0.3263 (972/2979) 1 Intact * Os_TE_641325 Chr12 27310034 27310033 - WUJI 257 0.0003 (1/2987) 0 * * Os_TE_641299 Chr12 27304097 27304096 + SEVERIN-2 1952 0.3241 (961/2965) 0 * * Os_TE_641293 Chr12 27300625 27300626 - SEVERIN-2 1952 0.3394 (1005/2961) 0 * * Os_TE_641284 Chr12 27292853 27292852 + OSR3_LTR 5201 0.0123 (37/2998) 0 * * Os_TE_641277 Chr12 27282654 27282653 - STOWAWAY44_OS 240 0.0003 (1/2994) 0 * Os_TE_641276 Os_TE_641276 Chr12 27282651 27282652 + STOWAWAY44_OS 240 0.0003 (1/2993) 0 * Os_TE_641277 Os_TE_641261 Chr12 27271736 27271737 + AMYLTP 383 0.0017 (5/2980) 0 * Os_TE_641260 Os_TE_641260 Chr12 27271728 27271727 - AMYLTP 383 0.0017 (5/2966) 0 * Os_TE_641261 Os_TE_641258 Chr12 27269362 27269363 - RIREX_LTR 8828 0.0003 (1/2992) 0 * Os_TE_641257 Os_TE_641257 Chr12 27269358 27269357 + RIREX_LTR 8828 0.0003 (1/2991) 0 * Os_TE_641258 Os_TE_641249 Chr12 27263511 27263512 - MuDR2_OS 6770 0.2799 (816/2915) 0 * Os_TE_641248 Os_TE_641248 Chr12 27263502 27263501 + MuDR2_OS 6770 0.2572 (732/2846) 0 * Os_TE_641249 Os_TE_641241 Chr12 27262241 27262242 - COPIA2-LTR_OS 6433 0.0003 (1/2974) 0 * Os_TE_641240 Os_TE_641240 Chr12 27262237 27262236 + COPIA2-LTR_OS 6433 0.0003 (1/2982) 0 * Os_TE_641241 Os_TE_641231 Chr12 27254576 27254577 - COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_641230 Os_TE_641230 Chr12 27254572 27254571 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_641231 Os_TE_641200 Chr12 27237558 27231062 - RIREX_LTR 8828 0.0191 (57/2978) 1 Intact Os_TE_641198 Os_TE_641198 Chr12 27231062 27237558 + RIREX_LTR 8828 0.0198 (59/2980) 1 Intact Os_TE_641200 Os_TE_641182 Chr12 27229865 27225625 + SZ-48LTR 3632 0.0181 (54/2988) 1 Intact Os_TE_641180 Os_TE_641180 Chr12 27225625 27229865 - SZ-48LTR 3632 0.0191 (57/2987) 1 Intact Os_TE_641182 Os_TE_641138 Chr12 27200748 27200749 - RETROSAT4_LTR 13504 0.0017 (5/2960) 0 * Os_TE_641137 Os_TE_641137 Chr12 27200744 27200743 + RETROSAT4_LTR 13504 0.0014 (4/2960) 0 * Os_TE_641138 Os_TE_641111 Chr12 27190761 27190762 + COPIA2-LTR_OS 6433 0.0007 (2/2988) 0 * Os_TE_641110 Os_TE_641110 Chr12 27190757 27190756 - COPIA2-LTR_OS 6433 0.0007 (2/2984) 0 * Os_TE_641111 Os_TE_641078 Chr12 27170599 27170600 + COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * * Os_TE_641069 Chr12 27164672 27164673 + CPSC2_LTR 5202 0.3007 (901/2996) 0 * * Os_TE_641051 Chr12 27153502 27153503 - SZ-40LTR 2465 0.0013 (4/2991) 0 * Os_TE_641050 Os_TE_641050 Chr12 27153498 27153497 - SZ-40LTR 2465 0.0013 (4/2990) 0 * Os_TE_641051 Os_TE_641010 Chr12 27129322 27129323 - OSTE20 496 0.0431 (129/2991) 0 * Os_TE_641009 Os_TE_641009 Chr12 27129318 27129317 - OSTE20 496 0.0408 (122/2991) 0 * Os_TE_641010 Os_TE_641004 Chr12 27119447 27116565 - ORSgTEMT01600768 234 0.6335 (1689/2666) 1 Intact Os_TE_640986 Os_TE_640986 Chr12 27116565 27119442 - ORSgTEMT01600768 234 0.6723 (1789/2661) 1 Intact Os_TE_641004 Os_TE_640981 Chr12 27113736 27113737 + ORSgTEMT01601934 207 0.0016 (3/1827) 0 * * Os_TE_640980 Chr12 27112736 27112737 - COPI2_LTR 4733 0.0003 (1/2991) 0 * Os_TE_640979 Os_TE_640979 Chr12 27112732 27112731 + COPI2_LTR 4733 0.0003 (1/2985) 0 * Os_TE_640980 Os_TE_640975 Chr12 27108136 27107892 - STOWAWAY51_OS 246 0.5833 (1652/2832) 1 Intact * Os_TE_640973 Chr12 27107237 27107236 + OLO24 345 0.4068 (1213/2982) 0 * * Os_TE_640969 Chr12 27106121 27106120 - ORSgTEMT00100582 334 0.4068 (1214/2984) 0 * Os_TE_640968 Os_TE_640968 Chr12 27106113 27106114 + NDNA1TNA_OS 334 0.3369 (916/2719) 0 * Os_TE_640969 Os_TE_640961 Chr12 27105381 27105744 + ORSgTEMT00600272 361 0.6187 (1780/2877) 1 Intact * Os_TE_640955 Chr12 27103913 27103914 - COPI2_LTR 4733 0.0010 (3/2933) 0 * * Os_TE_640950 Chr12 27103077 27103076 + STOWAWAY51_OS 246 0.4078 (1172/2874) 0 * Os_TE_640949 Os_TE_640949 Chr12 27103071 27103072 - STOWAWAY51_OS 246 0.0028 (5/1781) 0 * Os_TE_640950 Os_TE_640948 Chr12 27102992 27102991 + SEVERIN-2 1952 0.4206 (744/1769) 0 * * Os_TE_640943 Chr12 27101897 27102039 - ORSgTEMT00502000 141 0.6009 (1795/2987) 1 Intact * Os_TE_640933 Chr12 27094114 27094115 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_640932 Os_TE_640932 Chr12 27094110 27094109 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_640933 Os_TE_640931 Chr12 27093245 27093246 + INDITTO 263 0.2666 (794/2978) 0 * Os_TE_640930 Os_TE_640930 Chr12 27093243 27093242 - INDITTO 263 0.2633 (782/2970) 0 * Os_TE_640931 Os_TE_640927 Chr12 27091468 27091469 - SNAP-OL3 189 0.0161 (1/62) 0 * * Os_TE_640918 Chr12 27086543 27086542 - ENSPM4_OS 11610 0.4087 (1213/2968) 0 * Os_TE_640917 Os_TE_640917 Chr12 27086542 27086543 + ENSPM4_OS 11610 0.4098 (1218/2972) 0 * Os_TE_640918 Os_TE_640900 Chr12 27083667 27083429 - ORSgTEMT01601432 239 0.0039 (11/2831) -1 Intact Os_TE_640899 Os_TE_640899 Chr12 27083429 27083667 + ORSgTEMT01602181 239 0.0165 (47/2849) 1 Intact Os_TE_640900 Os_TE_640887 Chr12 27080440 27080689 - ORSgTEMT01602170 250 0.0158 (43/2715) 1 Intact * Os_TE_640877 Chr12 27070823 27071059 + ORSgTEMT01600628 237 0.0363 (48/1322) 1 Intact * Os_TE_640875 Chr12 27070017 27069869 + ORSgTEMT01700715 134 0.0364 (47/1292) 1 Intact * Os_TE_640871 Chr12 27069018 27069019 - TNR11 811 0.0152 (1/66) 0 * * Os_TE_640866 Chr12 27068348 27068109 - ORSgTEMT01601432 239 0.0381 (47/1233) 1 Intact Os_TE_640865 Os_TE_640865 Chr12 27068109 27068348 + ORSgTEMT01602181 239 0.0098 (12/1220) 1 Intact Os_TE_640866 Os_TE_640859 Chr12 27066141 27066353 + TESS 244 0.4318 (1263/2925) 1 Intact * Os_TE_640841 Chr12 27057784 27058006 + ORSgTETNOOT01028 232 0.0348 (49/1410) 1 Intact * Os_TE_640827 Chr12 27045806 27045807 - COPI2_LTR 4733 0.0010 (3/2901) 0 * * Os_TE_640825 Chr12 27045057 27044822 + STOWAWAY21_OS 243 0.0154 (46/2981) 0.83 Intact Os_TE_640824 Os_TE_640824 Chr12 27044820 27045031 + ORSgTEMT01601122 212 0.0400 (46/1150) 1 Intact Os_TE_640825 Os_TE_640821 Chr12 27043518 27042948 + ORSiTERTOOT00291 11421 0.0162 (47/2907) 1 Intact * Os_TE_640815 Chr12 27042068 27042069 - COPIA2-LTR_OS 6433 0.0004 (1/2757) 0 * * Os_TE_640780 Chr12 27036739 27036740 + INDITTO 263 0.0003 (1/2920) 0 * Os_TE_640779 Os_TE_640779 Chr12 27036737 27036736 - INDITTO 263 0.0003 (1/2976) 0 * Os_TE_640780 Os_TE_640774 Chr12 27035681 27035682 - COPI2_LTR 4733 0.0003 (1/2966) 0 * * Os_TE_640773 Chr12 27035656 27035657 - ORSgTEMT02400179 221 0.0003 (1/2963) 0 * * Os_TE_640768 Chr12 27033396 27033134 - ORSgTEMT00101174 225 0.0150 (45/2991) 1 Intact * Os_TE_640765 Chr12 27032131 27031945 + STOWAWAY11_OS 292 0.0163 (47/2891) 1 Intact Os_TE_640764 Os_TE_640764 Chr12 27031945 27032131 - STOWAWAY11_OS 292 0.0166 (48/2895) 1 Intact Os_TE_640765 Os_TE_640763 Chr12 27031807 27031806 + MPING 430 0.0003 (1/2955) 0 * * Os_TE_640744 Chr12 27019631 27019975 - SINE03_OS 360 0.0162 (46/2834) 1 Intact * Os_TE_640739 Chr12 27018397 27018396 - COPIA2-LTR_OS 6433 0.0003 (1/2914) 0 * * Os_TE_640728 Chr12 27015564 27015420 - OSTE19 162 0.0173 (48/2781) 1 Intact * Os_TE_640717 Chr12 27013918 27013917 - ORSgTETNOOT01070 193 0.1031 (92/892) 0 * * Os_TE_640712 Chr12 27012687 27012688 - COPIA2-LTR_OS 6433 0.0003 (1/2979) 0 * Os_TE_640711 Os_TE_640711 Chr12 27012683 27012682 + COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_640712 Os_TE_640697 Chr12 27007207 27006969 - ORSgTEMT01602413 239 0.0167 (50/2989) 1 Intact Os_TE_640696 Os_TE_640696 Chr12 27006969 27007207 - ORSgTEMT01602413 239 0.0148 (44/2983) 1 Intact Os_TE_640697 Os_TE_640678 Chr12 26989302 26989301 - RETROSAT4_LTR 13504 0.0017 (5/2972) 0 * * Os_TE_640661 Chr12 26983948 26983947 - COPIA2-LTR_OS 6433 0.0008 (1/1264) 0 * * Os_TE_640660 Chr12 26983206 26983205 + NDNA1TNA_OS 334 0.1266 (212/1674) 0 * Os_TE_640659 Os_TE_640659 Chr12 26983199 26983200 + ORSgTEMT00101620 161 0.1240 (209/1686) 0 * Os_TE_640660 Os_TE_640628 Chr12 26967370 26967369 - ORSgTEMT01601493 303 0.0798 (230/2882) 0 * * Os_TE_640619 Chr12 26961925 26966665 - RETRO2A_LTR 12895 0.0187 (48/2565) 1 Intact * Os_TE_640617 Chr12 26961847 26961846 + F524 291 0.0004 (1/2593) 0 * * Os_TE_640601 Chr12 26956283 26956282 + ORSgTEMT01702268 154 0.4349 (1165/2679) 0 * Os_TE_640600 Os_TE_640600 Chr12 26956272 26956273 - ORSgTEMT01701521 154 0.4262 (1132/2656) 0 * Os_TE_640601 Os_TE_640595 Chr12 26954183 26953990 - ORSgTEMT01601834 234 0.8020 (1835/2288) 1 Intact * Os_TE_640589 Chr12 26953215 26953216 + ORSgTEMT01701104 154 0.3110 (822/2643) 0 * * Os_TE_640587 Chr12 26953026 26953025 - MuDR4_OS 7610 0.0081 (23/2849) 0 * * Os_TE_640560 Chr12 26944300 26944301 - RETROSAT4_LTR 13504 0.8418 (1586/1884) 0 * * Os_TE_640505 Chr12 26932254 26932255 + RIREX_LTR 8828 0.0011 (2/1755) 0 * * Os_TE_640497 Chr12 26930564 26930565 - SETARIA1 1293 0.0770 (227/2948) 0 * * Os_TE_640489 Chr12 26928055 26928054 - SZ-22_LTR 4403 0.0016 (3/1866) 0 * * Os_TE_640474 Chr12 26924286 26924285 + TRUNCATOR 2918 0.5299 (985/1859) 0 * Os_TE_640473 Os_TE_640473 Chr12 26924285 26924286 - TRUNCATOR 2918 0.5285 (984/1862) 0 * Os_TE_640474 Os_TE_640461 Chr12 26916899 26917133 - ORSgTEMT01601605 240 0.0164 (46/2812) 1 Intact * Os_TE_640459 Chr12 26915342 26915341 + ORSgTETNOOT00032 218 0.0021 (6/2901) 0 * * Os_TE_640453 Chr12 26913871 26913872 - COPIA2-LTR_OS 6433 0.0008 (1/1239) 0 * * Os_TE_640445 Chr12 26911595 26911387 - ORSgTEMT01400015 213 0.6020 (1257/2088) 1 Intact * Os_TE_640435 Chr12 26906062 26906063 - STOWAWAY43_OS 233 0.5869 (1722/2934) 0 * * Os_TE_640434 Chr12 26902781 26902391 - TYPEU1 380 0.4167 (1226/2942) 1 Intact Os_TE_640432 Os_TE_640432 Chr12 26902390 26902781 + TYPEU4 402 0.4123 (1229/2981) 1 Intact Os_TE_640434 Os_TE_640431 Chr12 26901724 26901725 + STOWAWAY1_OS 149 0.5675 (1580/2784) 0 * * Os_TE_640426 Chr12 26901601 26901357 - ORSgTEMT01400014 209 0.4193 (1224/2919) 1 Intact Os_TE_640425 Os_TE_640425 Chr12 26901357 26901532 + ORSgTEMT01400039 200 0.4113 (1152/2801) 1 Intact Os_TE_640426 Os_TE_640424 Chr12 26901256 26901257 - ORSgTEMT02400179 221 0.6028 (1782/2956) 0 * Os_TE_640423 Os_TE_640423 Chr12 26901255 26901254 - TYPEM 227 0.6026 (1729/2869) 0 * Os_TE_640424 Os_TE_640422 Chr12 26900821 26900590 + ORSgTEMT01602606 192 0.4522 (1254/2773) 1 Intact Os_TE_640421 Os_TE_640421 Chr12 26900584 26900821 - ORSgTEMT01601696 238 0.4220 (1245/2950) 1 Intact Os_TE_640422 Os_TE_640414 Chr12 26896685 26896684 - COPI2_LTR 4733 0.1110 (317/2857) 0 * * Os_TE_640411 Chr12 26894502 26894501 - ORSgTEMT04600010 284 0.5775 (1598/2767) 0 * * Os_TE_640406 Chr12 26892877 26892878 - ORSgTEMT00501329 143 0.5905 (1745/2955) 0 * * Os_TE_640394 Chr12 26891113 26891114 - COWARD 200 0.5963 (1784/2992) 0 * * Os_TE_640389 Chr12 26887473 26887474 + COPIA2-LTR_OS 6433 0.0007 (2/2979) 0 * Os_TE_640388 Os_TE_640388 Chr12 26887469 26887468 - COPIA2-LTR_OS 6433 0.0007 (2/2925) 0 * Os_TE_640389 Os_TE_640384 Chr12 26884986 26885329 - ORSgTEMT01900024 348 0.4358 (1202/2758) 1 Intact * Os_TE_640382 Chr12 26884796 26884797 + ORSgTEMT01602580 283 0.5924 (1609/2716) 0 * * Os_TE_640367 Chr12 26877443 26877442 + ORSgTEMT01601591 242 0.0007 (2/2990) 0 * * Os_TE_639997 Chr12 26795419 26795420 - OsSN3 183 0.5973 (1781/2982) 0 * * Os_TE_639981 Chr12 26791318 26791319 + HARB-1_OS 5166 0.0024 (7/2972) 0 * Os_TE_639980 Os_TE_639980 Chr12 26791316 26791315 - HARB-1_OS 5166 0.0024 (7/2973) 0 * Os_TE_639981 Os_TE_639979 Chr12 26791113 26791114 + MDR2 6967 0.0037 (11/2975) 0 * Os_TE_639978 Os_TE_639978 Chr12 26791104 26791103 + MDR2 6967 0.0040 (12/2975) 0 * Os_TE_639979 Os_TE_639932 Chr12 26773024 26773023 - ORSiTERT00200134 431 0.0003 (1/2992) 0 * * Os_TE_639930 Chr12 26771220 26771221 - SC-3_LTR 5748 0.0010 (3/2996) 0 * Os_TE_639929 Os_TE_639929 Chr12 26771216 26771215 + ORSiTERTOOT00296 5553 0.0010 (3/2996) 0 * Os_TE_639930 Os_TE_639919 Chr12 26765329 26764994 + ORSgTEMT00100531 325 0.4128 (1229/2977) 1 Intact Os_TE_639918 Os_TE_639918 Chr12 26764993 26765328 + ORSgTEMT00101341 314 0.4133 (1220/2952) 1 Intact Os_TE_639919 Os_TE_639900 Chr12 26756574 26756575 - RETRO2_LTR 12874 0.0041 (12/2955) 0 * * Os_TE_639868 Chr12 26750825 26750826 - RIREX_LTR 8828 0.0003 (1/2971) 0 * Os_TE_639867 Os_TE_639867 Chr12 26750821 26750820 + RIREX_LTR 8828 0.0003 (1/2967) 0 * Os_TE_639868 Os_TE_639799 Chr12 26714411 26714410 + SZ-19LTR 1513 0.0010 (3/2984) 0 * * Os_TE_639797 Chr12 26713293 26709428 + RETROSAT4_LTR 13504 0.4155 (1241/2987) 1 Solo_LTR Os_TE_639795 Os_TE_639795 Chr12 26709428 26713294 - RETROSAT4_LTR 13504 0.4172 (1250/2996) 1 Solo_LTR Os_TE_639797 Os_TE_639746 Chr12 26692990 26692989 + ORSgTEMT00101674 340 0.5153 (1536/2981) 0 * * Os_TE_639735 Chr12 26689999 26690000 - RETROSAT2LTRA 3112 0.0097 (29/2994) 0 * * Os_TE_639729 Chr12 26685044 26685045 - RIREX_LTR 8828 0.0007 (2/2955) 0 * * Os_TE_639725 Chr12 26680453 26684021 + TWIFBIG 3567 0.5639 (1408/2497) 1 Intact * Os_TE_639708 Chr12 26677962 26677963 - COPIA2-LTR_OS 6433 0.0004 (1/2809) 0 * * Os_TE_639697 Chr12 26671147 26671148 + CLOUD-7 495 0.0004 (1/2827) 0 * * Os_TE_639680 Chr12 26666429 26666430 - ORSgTEMT00600524 364 0.0084 (25/2992) 0 * Os_TE_639679 Os_TE_639679 Chr12 26666427 26666426 + ORSgTEMT00600272 361 0.0080 (24/2990) 0 * Os_TE_639680 Os_TE_639676 Chr12 26664622 26664623 + OSCOPIA2_LTR 5476 0.0010 (3/2980) 0 * * Os_TE_639651 Chr12 26654914 26654915 - COPIA2-LTR_OS 6433 0.0003 (1/2978) 0 * * Os_TE_639648 Chr12 26652922 26652923 - COPIA2-LTR_OS 6433 0.0003 (1/2986) 0 * Os_TE_639647 Os_TE_639647 Chr12 26652918 26652917 + COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_639648 Os_TE_639644 Chr12 26649015 26649016 - SC-3_LTR 5748 0.0003 (1/2993) 0 * * Os_TE_639640 Chr12 26646211 26646212 + SC-8_LTR 4951 0.0003 (1/2991) 0 * Os_TE_639639 Os_TE_639639 Chr12 26646207 26646206 - SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_639640 Os_TE_639624 Chr12 26642572 26642571 + MPING 430 0.0013 (4/2994) 0 * * Os_TE_639623 Chr12 26642466 26642467 + MPING 430 0.0003 (1/2996) 0 * Os_TE_639622 Os_TE_639622 Chr12 26642464 26642463 - MPING 430 0.0003 (1/2996) 0 * Os_TE_639623 Os_TE_639616 Chr12 26640897 26640896 + ORSiTERT00200076 3543 0.0007 (2/2925) 0 * * Os_TE_639593 Chr12 26628013 26628014 + INDITTO 263 0.0254 (74/2908) 0 * Os_TE_639592 Os_TE_639592 Chr12 26628011 26628010 - INDITTO 263 0.0249 (73/2937) 0 * Os_TE_639593 Os_TE_639589 Chr12 26625117 26625116 - COPI2_LTR 4733 0.0043 (13/2997) 0 * * Os_TE_639578 Chr12 26612297 26612296 + STOWAWAY51_OS 246 0.0012 (2/1641) 0 * Os_TE_639577 Os_TE_639577 Chr12 26612291 26612292 - STOWAWAY51_OS 246 0.0012 (2/1638) 0 * Os_TE_639578 Os_TE_639568 Chr12 26609197 26609196 - MPING 430 0.0010 (3/2931) 0 * * Os_TE_639553 Chr12 26606222 26606223 - GYPSY-A_LTR 8951 0.0004 (1/2438) 0 * * Os_TE_639543 Chr12 26600356 26600355 + INDITTO 263 0.0047 (14/2995) 0 * * Os_TE_639530 Chr12 26597393 26597394 + RIRE2_LTR 11306 0.0003 (1/2980) 0 * Os_TE_639529 Os_TE_639529 Chr12 26597389 26597388 - RIRE2_LTR 11306 0.0003 (1/2978) 0 * Os_TE_639530 Os_TE_639489 Chr12 26570449 26570448 - RIREX_LTR 8828 0.0812 (243/2991) 0 * * Os_TE_639486 Chr12 26568381 26568382 + ORSgTETNOOT01219 231 0.0047 (14/2968) 0 * Os_TE_639485 Os_TE_639485 Chr12 26568373 26568372 + ORSgTETNOOT00908 242 0.0047 (14/2969) 0 * Os_TE_639486 Os_TE_639484 Chr12 26566810 26566811 + ORSiTERTOOT00321 5685 0.0819 (245/2992) 0 * Os_TE_639483 Os_TE_639483 Chr12 26566806 26566805 - ORSiTERTOOT00321 5685 0.0797 (238/2985) 0 * Os_TE_639484 Os_TE_639430 Chr12 26529465 26516521 - RETRO2_LTR 12874 0.5317 (1593/2996) 1 Intact Os_TE_639415 Os_TE_639415 Chr12 26516521 26517742 + SZLTR 1249 0.5225 (1559/2984) 1 Intact Os_TE_639430 Os_TE_639413 Chr12 26515454 26515453 - ORSgTEMT01700044 149 0.0013 (4/2994) 0 * * Os_TE_639412 Chr12 26515451 26515452 + ORSgTEMT01701591 154 0.0017 (5/2995) 0 * Os_TE_639411 Os_TE_639411 Chr12 26515447 26515446 - ORSgTEMT01702316 162 0.0013 (4/2995) 0 * Os_TE_639412 Os_TE_639399 Chr12 26505287 26505286 + RIREX_LTR 8828 0.0007 (2/2986) 0 * * Os_TE_639395 Chr12 26502462 26499537 + ORSiCMCM00100019 2717 0.5172 (1533/2964) 1 Intact * Os_TE_639380 Chr12 26498526 26498527 - SC-3_LTR 5748 0.0010 (3/2993) 0 * * Os_TE_639373 Chr12 26494548 26494547 + COPI1_LTR 4721 0.0017 (5/2965) 0 * * Os_TE_639364 Chr12 26492152 26492153 + AMYLTP 383 0.0825 (247/2995) 0 * * Os_TE_639358 Chr12 26491295 26491296 + DS-RICE4N 715 0.0034 (10/2963) 0 * * Os_TE_639341 Chr12 26485012 26483712 + CACTA-B 1103 0.5373 (1599/2976) 1 Intact Os_TE_639340 Os_TE_639340 Chr12 26483713 26485009 - CACTA-M 1129 0.5337 (1583/2966) 1 Intact Os_TE_639341 Os_TE_639338 Chr12 26483208 26483209 + INDITTO 263 0.0247 (74/2992) 0 * Os_TE_639337 Os_TE_639337 Chr12 26483206 26483205 - INDITTO 263 0.0251 (75/2991) 0 * Os_TE_639338 Os_TE_639323 Chr12 26478843 26478844 - F524 291 0.0003 (1/2954) 0 * * Os_TE_639315 Chr12 26474627 26474628 + ENSPM3_OS 10837 0.0013 (4/2963) 0 * Os_TE_639314 Os_TE_639314 Chr12 26474625 26474624 - ENSPM3_OS 10837 0.0014 (4/2903) 0 * Os_TE_639315 Os_TE_639313 Chr12 26474067 26474066 + TREP215 239 0.4774 (1393/2918) 0 * * Os_TE_639309 Chr12 26472724 26472723 + STOWAWAY51_OS 246 0.2344 (686/2927) 0 * Os_TE_639308 Os_TE_639308 Chr12 26472718 26472719 + ORSgTEMT01601591 242 0.2353 (685/2911) 0 * Os_TE_639309 Os_TE_639300 Chr12 26470412 26470411 - RETRO1_LTR 8314 0.0040 (12/2983) 0 * * Os_TE_639298 Chr12 26469254 26469255 - RETROSAT4_LTR 13504 0.0023 (7/2991) 0 * Os_TE_639297 Os_TE_639297 Chr12 26469250 26469249 + RETROSAT4_LTR 13504 0.0030 (9/2987) 0 * Os_TE_639298 Os_TE_639296 Chr12 26468917 26468916 + STOWAWAY9_OS 235 0.0014 (4/2892) 0 * * Os_TE_639293 Chr12 26468469 26468468 - ORSgTEMT02000041 194 0.0068 (20/2933) 0 * * Os_TE_639266 Chr12 26462231 26462230 - NDNA1TNA_OS 334 0.0040 (12/2993) 0 * * Os_TE_639258 Chr12 26457282 26457283 - CACTA-O 1235 0.0004 (1/2690) 0 * * Os_TE_639241 Chr12 26447520 26447519 - NDNA2TNA_OS 346 0.4780 (1411/2952) 0 * * Os_TE_639230 Chr12 26446066 26446065 + STOWAWAY51_OS 246 0.0003 (1/2975) 0 * Os_TE_639229 Os_TE_639229 Chr12 26446060 26446061 - STOWAWAY51_OS 246 0.0003 (1/2982) 0 * Os_TE_639230 Os_TE_639224 Chr12 26445402 26445403 + AMYLTP 383 0.0003 (1/2969) 0 * Os_TE_639223 Os_TE_639223 Chr12 26445394 26445393 - AMYLTP 383 0.0010 (3/2969) 0 * Os_TE_639224 Os_TE_639205 Chr12 26440858 26440857 + ORSgTEMT00700017 386 0.0003 (1/2985) 0 * * Os_TE_639203 Chr12 26440564 26440565 + ORSgTEMT00700017 386 0.0014 (4/2960) 0 * * Os_TE_639095 Chr12 26401158 26401159 - RIRE2_LTR 11306 0.1888 (565/2993) 0 * Os_TE_639094 Os_TE_639094 Chr12 26401154 26401153 - ORSgTERT00201216 11284 0.1869 (559/2991) 0 * Os_TE_639095 Os_TE_639092 Chr12 26400735 26400736 + COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_639091 Os_TE_639091 Chr12 26400731 26400730 - COPIA2-LTR_OS 6433 0.0003 (1/2961) 0 * Os_TE_639092 Os_TE_639032 Chr12 26377299 26377298 - COPIA2-LTR_OS 6433 0.0003 (1/2965) 0 * * Os_TE_639019 Chr12 26375284 26375285 - INDITTO 263 0.0946 (274/2896) 0 * Os_TE_639018 Os_TE_639018 Chr12 26375282 26375281 + INDITTO 263 0.1005 (291/2896) 0 * Os_TE_639019 Os_TE_639009 Chr12 26372333 26372334 - ORSgTEMT00501758 147 0.0124 (37/2990) 0 * * Os_TE_639006 Chr12 26367600 26367599 - STOWAWAY51_OS 246 0.0003 (1/2989) 0 * Os_TE_639005 Os_TE_639005 Chr12 26367594 26367595 + STOWAWAY51_OS 246 0.0003 (1/2938) 0 * Os_TE_639006 Os_TE_638993 Chr12 26355777 26355778 + ORSgTETNOOT01313 249 0.0017 (5/2977) 0 * Os_TE_638992 Os_TE_638992 Chr12 26355769 26355768 + ORSgTETNOOT01834 251 0.0017 (5/2986) 0 * Os_TE_638993 Os_TE_638990 Chr12 26355752 26355753 - STOWAWAY51_OS 246 0.0131 (39/2980) 0 * * Os_TE_638967 Chr12 26352068 26352069 - HARB-1_OS 5166 0.0003 (1/2983) 0 * Os_TE_638966 Os_TE_638966 Chr12 26352066 26352065 + HARB-1_OS 5166 0.0003 (1/2982) 0 * Os_TE_638967 Os_TE_638961 Chr12 26350198 26350199 - GYPSY-A_LTR 8951 0.0010 (3/2995) 0 * Os_TE_638960 Os_TE_638960 Chr12 26350194 26350193 + GYPSY-A_LTR 8951 0.0010 (3/2994) 0 * Os_TE_638961 Os_TE_638958 Chr12 26350130 26350129 + ORSgTEMT00800058 376 0.2706 (810/2993) 0 * * Os_TE_638954 Chr12 26349329 26349330 + NDNA1TNA_OS 334 0.2730 (817/2993) 0 * Os_TE_638953 Os_TE_638953 Chr12 26349327 26349326 - NDNA1TNA_OS 334 0.2693 (805/2989) 0 * Os_TE_638954 Os_TE_638952 Chr12 26347740 26347741 - ORSiTERT00100062 5674 0.0003 (1/2975) 0 * Os_TE_638951 Os_TE_638951 Chr12 26347736 26347735 + OSTONOR1_LTR 6440 0.0003 (1/2977) 0 * Os_TE_638952 Os_TE_638946 Chr12 26340404 26340405 + TRC1 306 0.0030 (9/2994) 0 * Os_TE_638945 Os_TE_638945 Chr12 26340402 26340401 + TRC1 306 0.0030 (9/2994) 0 * Os_TE_638946 Os_TE_638924 Chr12 26324781 26324780 + ORSgTEMT00501279 126 0.0020 (6/2958) 0 * * Os_TE_638912 Chr12 26321680 26321681 - COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * * Os_TE_638910 Chr12 26321597 26321598 - COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_638909 Os_TE_638909 Chr12 26321593 26321592 + COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_638910 Os_TE_638908 Chr12 26321526 26321525 + OSTE33 1012 0.0007 (2/2992) 0 * * Os_TE_638892 Chr12 26317155 26317154 - ORMOSIA 482 0.0017 (5/2985) 0 * * Os_TE_638883 Chr12 26313054 26313055 + ORSiTERTOOT00296 5553 0.0020 (6/2994) 0 * Os_TE_638882 Os_TE_638882 Chr12 26313050 26313049 - SC-3_LTR 5748 0.0020 (6/2990) 0 * Os_TE_638883 Os_TE_638880 Chr12 26311177 26311178 + ORSiTERTOOT00296 5553 0.0010 (3/2988) 0 * Os_TE_638879 Os_TE_638879 Chr12 26311173 26311172 - SC-3_LTR 5748 0.0010 (3/2995) 0 * Os_TE_638880 Os_TE_638873 Chr12 26299469 26299470 + ORSgTEMT00300069 394 0.2825 (759/2687) 0 * * Os_TE_638861 Chr12 26290879 26290878 + ORSgTEMT01602580 283 0.0174 (52/2988) 0 * * Os_TE_638840 Chr12 26287301 26287302 + MuDR4_OS 7610 0.0017 (5/2978) 0 * Os_TE_638839 Os_TE_638839 Chr12 26287292 26287291 - MuDR4_OS 7610 0.0017 (5/2981) 0 * Os_TE_638840 Os_TE_638816 Chr12 26285343 26285342 + RPO_OS 1983 0.0161 (47/2927) 0 * Os_TE_638815 Os_TE_638815 Chr12 26285342 26285343 - RPO_OS 1983 0.0150 (44/2940) 0 * Os_TE_638816 Os_TE_638791 Chr12 26278969 26278970 - SZ-55_LTR 10318 0.0003 (1/2958) 0 * Os_TE_638790 Os_TE_638790 Chr12 26278965 26278964 + SZ-55_LTR 10318 0.0003 (1/2960) 0 * Os_TE_638791 Os_TE_638778 Chr12 26277433 26277434 - ORSgTEMT00901723 248 0.0178 (53/2979) 0 * * Os_TE_638777 Chr12 26277221 26277222 + NDNA1TNA_OS 334 0.0171 (51/2988) 0 * * Os_TE_638775 Chr12 26276903 26276904 + NDNA1TNA_OS 334 0.0172 (51/2971) 0 * * Os_TE_638772 Chr12 26275964 26275965 + ORSgTEMT01601934 207 0.0173 (51/2946) 0 * Os_TE_638771 Os_TE_638771 Chr12 26275957 26275956 + ORSgTEMT01601934 207 0.0173 (51/2942) 0 * Os_TE_638772 Os_TE_638757 Chr12 26272301 26272302 - ORSgTEMT02000041 194 0.0033 (10/2990) 0 * * Os_TE_638753 Chr12 26270251 26270252 + ORSgTETNOOT01834 251 0.0003 (1/2980) 0 * * Os_TE_638745 Chr12 26264612 26264613 - COPI2_LTR 4733 0.0003 (1/2973) 0 * Os_TE_638744 Os_TE_638744 Chr12 26264608 26264607 + COPI2_LTR 4733 0.0007 (2/2970) 0 * Os_TE_638745 Os_TE_638743 Chr12 26264538 26264539 - COPI2_LTR 4733 0.0005 (1/2035) 0 * * Os_TE_638740 Chr12 26262748 26262749 + MPING 430 0.0003 (1/2990) 0 * Os_TE_638739 Os_TE_638739 Chr12 26262746 26262745 - MPING 430 0.0003 (1/2983) 0 * Os_TE_638740 Os_TE_638733 Chr12 26261129 26260906 - ORSiTEMT01000008 242 0.4810 (1394/2898) 1 Intact * Os_TE_638731 Chr12 26260416 26260417 - ORSgTETN00200001 10994 0.0046 (13/2856) 0 * Os_TE_638730 Os_TE_638730 Chr12 26260414 26260413 + SPMLIKE 10989 0.0043 (12/2792) 0 * Os_TE_638731 Os_TE_638728 Chr12 26259606 26259607 + STOWAWAY51_OS 246 0.0007 (2/2954) 0 * * Os_TE_638718 Chr12 26257332 26257333 - ORSgTETNOOT01413 258 0.0017 (5/2964) 0 * * Os_TE_638713 Chr12 26251012 26251013 - MPING 430 0.0007 (2/2909) 0 * Os_TE_638712 Os_TE_638712 Chr12 26251010 26251009 + MPING 430 0.0007 (2/2897) 0 * Os_TE_638713 Os_TE_638656 Chr12 26241911 26241912 - INDITTO 263 0.0047 (14/2960) 0 * Os_TE_638655 Os_TE_638655 Chr12 26241909 26241908 + INDITTO 263 0.0024 (7/2922) 0 * Os_TE_638656 Os_TE_638617 Chr12 26232623 26232624 - ORSgTETNOOT02565 240 0.0044 (13/2981) 0 * * Os_TE_638614 Chr12 26231644 26231645 - ORSgTEMT01600106 238 0.0003 (1/2916) 0 * * Os_TE_638600 Chr12 26230256 26230255 + ORSiTEMT06300001 333 0.0016 (4/2463) 0 * * Os_TE_638595 Chr12 26229529 26229528 - EnSpm-13_OS 11171 0.0004 (1/2803) 0 * * Os_TE_638586 Chr12 26217771 26217772 - SC-8_LTR 4951 0.0010 (3/2966) 0 * Os_TE_638585 Os_TE_638585 Chr12 26217767 26217766 + SC-8_LTR 4951 0.0010 (3/2978) 0 * Os_TE_638586 Os_TE_638579 Chr12 26213700 26213701 + SC-8_LTR 4951 0.0003 (1/2997) 0 * Os_TE_638578 Os_TE_638578 Chr12 26213696 26213695 - SC-8_LTR 4951 0.0003 (1/2998) 0 * Os_TE_638579 Os_TE_638577 Chr12 26213532 26213531 - STOWAWAY51_OS 246 0.0107 (32/2995) 0 * Os_TE_638576 Os_TE_638576 Chr12 26213526 26213527 + STOWAWAY51_OS 246 0.0123 (37/2997) 0 * Os_TE_638577 Os_TE_638575 Chr12 26213138 26213139 - ORSgTETNOOT02565 240 0.0143 (43/2997) 0 * Os_TE_638574 Os_TE_638574 Chr12 26213135 26213134 + ORSiTEMT01000008 242 0.0147 (44/2997) 0 * Os_TE_638575 Os_TE_638573 Chr12 26211819 26211820 + ORSiTERTOOT00296 5553 0.0003 (1/2994) 0 * Os_TE_638572 Os_TE_638572 Chr12 26211815 26211814 - SC-3_LTR 5748 0.0003 (1/2990) 0 * Os_TE_638573 Os_TE_638566 Chr12 26208627 26208628 - ORSgTEMT00600478 361 0.0007 (2/2961) 0 * Os_TE_638565 Os_TE_638565 Chr12 26208622 26208621 + ORSgTEMT00600272 361 0.0007 (2/2949) 0 * Os_TE_638566 Os_TE_638537 Chr12 26198124 26198125 + RETRO1_LTR 8314 0.0077 (23/2985) 0 * Os_TE_638536 Os_TE_638536 Chr12 26198120 26198119 - RETRO1_LTR 8314 0.0077 (23/2982) 0 * Os_TE_638537 Os_TE_638527 Chr12 26188781 26188780 + ORSgTEMT01700299 212 0.0093 (25/2680) 0 * * Os_TE_638525 Chr12 26186962 26186963 + ORSgTEMT00600287 363 0.0017 (5/2984) 0 * Os_TE_638524 Os_TE_638524 Chr12 26186960 26186959 + ORSgTEMT00600124 361 0.0017 (5/2983) 0 * Os_TE_638525 Os_TE_638509 Chr12 26185061 26185062 + ORSgTETNOOT02577 232 0.0013 (4/2994) 0 * * Os_TE_638506 Chr12 26183350 26183197 - ORSgTEMT01701882 154 0.3615 (1079/2985) 1 Intact Os_TE_638505 Os_TE_638505 Chr12 26183197 26183350 - STOWAWAY50_OS 174 0.3624 (1078/2975) 1 Intact Os_TE_638506 Os_TE_638496 Chr12 26179517 26179378 - ORSgTETNOOT01930 140 0.3576 (1052/2942) 1 Intact Os_TE_638495 Os_TE_638495 Chr12 26179374 26179514 + ORSgTEMT00500201 140 0.3507 (1042/2971) 1 Intact Os_TE_638496 Os_TE_638486 Chr12 26175151 26175150 - ORSgTEMT01601208 238 0.0127 (38/2990) 0 * Os_TE_638485 Os_TE_638485 Chr12 26175150 26175151 - ORSgTEMT01600639 228 0.0121 (36/2987) 0 * Os_TE_638486 Os_TE_638475 Chr12 26172110 26172109 + OLO24 345 0.6671 (1944/2914) 0 * * Os_TE_638467 Chr12 26171302 26171303 + MERMITE18C 1473 0.5998 (1595/2659) 0 * * Os_TE_638464 Chr12 26171046 26171045 + ORSgTEMT01701591 154 0.0010 (3/2913) 0 * * Os_TE_638462 Chr12 26170623 26170288 - ORSgTEMT00100272 356 0.3447 (1029/2985) 1 Intact Os_TE_638460 Os_TE_638460 Chr12 26170287 26170607 + ORSgTEMT00100531 325 0.3480 (1039/2986) 1 Intact Os_TE_638462 Os_TE_638454 Chr12 26169688 26169689 + SEVERIN-2 1952 0.0009 (2/2194) 0 * * Os_TE_638451 Chr12 26168797 26168798 + STOWAWAY17_OS 259 0.6445 (1864/2892) 0 * Os_TE_638450 Os_TE_638450 Chr12 26168796 26168795 - ORSgTETNOOT02364 258 0.6158 (1681/2730) 0 * Os_TE_638451 Os_TE_638447 Chr12 26168674 26168445 + ORSgTEMT01602029 239 0.3762 (1073/2852) 1 Intact Os_TE_638446 Os_TE_638446 Chr12 26168442 26168671 + ORSgTEMT01602141 239 0.3674 (1058/2880) 1 Intact Os_TE_638447 Os_TE_638444 Chr12 26167561 26167422 + ORSgTEMT00501356 145 0.3618 (1076/2974) 1 Intact Os_TE_638442 Os_TE_638442 Chr12 26167420 26167559 - ORSgTETNOOT01930 140 0.3645 (1080/2963) 1 Intact Os_TE_638444 Os_TE_638439 Chr12 26166764 26166765 + ORSgTEMT01601934 207 0.6190 (1623/2622) 0 * * Os_TE_638433 Chr12 26164497 26164498 + MPING 430 0.0009 (1/1109) 0 * Os_TE_638432 Os_TE_638432 Chr12 26164495 26164494 - MPING 430 0.0003 (1/2972) 0 * Os_TE_638433 Os_TE_638426 Chr12 26161260 26161261 + MERMITEB 1610 0.0017 (5/2964) 0 * * Os_TE_638421 Chr12 26160882 26160883 + COPI2_LTR 4733 0.0007 (2/2967) 0 * Os_TE_638420 Os_TE_638420 Chr12 26160878 26160877 - COPI2_LTR 4733 0.0007 (2/2959) 0 * Os_TE_638421 Os_TE_638411 Chr12 26158926 26158927 + TELIA 141 0.0003 (1/2990) 0 * Os_TE_638410 Os_TE_638410 Chr12 26158918 26158917 - TELIA 141 0.0003 (1/2990) 0 * Os_TE_638411 Os_TE_638407 Chr12 26155448 26155449 + COPIA2-LTR_OS 6433 0.0003 (1/2954) 0 * Os_TE_638406 Os_TE_638406 Chr12 26155444 26155443 - COPIA2-LTR_OS 6433 0.0003 (1/2968) 0 * Os_TE_638407 Os_TE_638376 Chr12 26150437 26150436 - ORSgTETNOOT02417 265 0.0054 (16/2962) 0 * * Os_TE_638374 Chr12 26149998 26149999 + RETRO2A_LTR 12895 0.0074 (22/2973) 0 * Os_TE_638373 Os_TE_638373 Chr12 26149994 26149993 - RETRO2_LTR 12874 0.0084 (25/2970) 0 * Os_TE_638374 Os_TE_638361 Chr12 26138069 26138068 - STOWAWAY51_OS 246 0.0087 (14/1609) 0 * Os_TE_638360 Os_TE_638360 Chr12 26138063 26138064 + STOWAWAY51_OS 246 0.0056 (16/2880) 0 * Os_TE_638361 Os_TE_638359 Chr12 26138047 26138048 + COPIA2-LTR_OS 6433 0.0014 (4/2845) 0 * Os_TE_638358 Os_TE_638358 Chr12 26138043 26138042 - COPIA2-LTR_OS 6433 0.0014 (4/2803) 0 * Os_TE_638359 Os_TE_638352 Chr12 26136811 26136812 - SZ-40LTR 2465 0.1684 (478/2839) 0 * Os_TE_638351 Os_TE_638351 Chr12 26136807 26136806 + SZ-40LTR 2465 0.1621 (465/2869) 0 * Os_TE_638352 Os_TE_638348 Chr12 26136511 26136512 + ORSgTEMT00900961 237 0.7111 (2004/2818) 0 * * Os_TE_638335 Chr12 26130252 26130251 - ORSgTEMT01602413 239 0.0051 (15/2940) 0 * * Os_TE_638332 Chr12 26128445 26128444 - STOWAWAY44_OS 240 0.0079 (20/2521) 0 * * Os_TE_638327 Chr12 26123175 26123174 + ORSgTEMT01600196 241 0.6525 (1893/2901) 0 * * Os_TE_638306 Chr12 26115943 26115942 + TWIF 586 0.0008 (1/1318) 0 * * Os_TE_638296 Chr12 26113253 26113254 - SC-8_LTR 4951 0.0013 (4/2980) 0 * * Os_TE_638294 Chr12 26112985 26112986 - SC-3_LTR 5748 0.0003 (1/2989) 0 * Os_TE_638293 Os_TE_638293 Chr12 26112981 26112980 + ORSiTERTOOT00296 5553 0.0003 (1/2987) 0 * Os_TE_638294 Os_TE_638292 Chr12 26111750 26111749 + ORSiTERTOOT00296 5553 0.0007 (2/2996) 0 * * Os_TE_638280 Chr12 26108976 26108977 + TNR2A 152 0.0003 (1/2963) 0 * Os_TE_638279 Os_TE_638279 Chr12 26108963 26108962 - TNR2A 152 0.0003 (1/2965) 0 * Os_TE_638280 Os_TE_638271 Chr12 26104177 26104176 + TWIF 586 0.0003 (1/2983) 0 * * Os_TE_638262 Chr12 26100502 26100501 - ORSgTEMT01601432 239 0.0124 (37/2993) 0 * Os_TE_638261 Os_TE_638261 Chr12 26100499 26100500 + ORSgTEMT01602181 239 0.0133 (40/2997) 0 * Os_TE_638262 Os_TE_638239 Chr12 26079759 26079760 - DS-RICE2N 613 0.0024 (7/2965) 0 * Os_TE_638238 Os_TE_638238 Chr12 26079752 26079751 + DS-RICE4N 715 0.0027 (8/2989) 0 * Os_TE_638239 Os_TE_638231 Chr12 26072004 26071605 - OSTE9 421 0.3407 (991/2909) 1 Intact Os_TE_638230 Os_TE_638230 Chr12 26071604 26072000 - OSTE9 421 0.3490 (1024/2934) 1 Intact Os_TE_638231 Os_TE_638223 Chr12 26070289 26070850 + BAJIELTR 4500 0.3603 (1068/2964) 1 Intact * Os_TE_638214 Chr12 26067836 26067837 + COPIA2-LTR_OS 6433 0.0003 (1/2984) 0 * Os_TE_638213 Os_TE_638213 Chr12 26067832 26067831 - COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_638214 Os_TE_638210 Chr12 26067323 26067322 - ORSgTEMT00901723 248 0.0040 (12/2982) 0 * Os_TE_638209 Os_TE_638209 Chr12 26067316 26067317 - ORSgTEMT00900099 250 0.0040 (12/2993) 0 * Os_TE_638210 Os_TE_638166 Chr12 26057539 26057540 - STOWAWAY44_OS 240 0.0003 (1/2909) 0 * Os_TE_638165 Os_TE_638165 Chr12 26057537 26057536 - ORSgTEMT00101174 225 0.0068 (20/2939) 0 * Os_TE_638166 Os_TE_638164 Chr12 26057322 26057321 - STOWAWAY51_OS 246 0.0004 (1/2843) 0 * * Os_TE_638163 Chr12 26057300 26057301 + INDITTO 263 0.0017 (5/2868) 0 * Os_TE_638162 Os_TE_638162 Chr12 26057298 26057297 - INDITTO 263 0.0018 (5/2855) 0 * Os_TE_638163 Os_TE_638158 Chr12 26054445 26054446 + STOWAWAY51_OS 246 0.0003 (1/2952) 0 * * Os_TE_638154 Chr12 26052682 26052683 + STOWAWAY11_OS 292 0.0164 (49/2986) 0 * Os_TE_638153 Os_TE_638153 Chr12 26052681 26052680 - STOWAWAY11_OS 292 0.0134 (40/2983) 0 * Os_TE_638154 Os_TE_638147 Chr12 26047287 26047286 - CACTA-Q 2268 0.0014 (4/2951) 0 * * Os_TE_638129 Chr12 26042618 26042619 + RETRO2_LTR 12874 0.0020 (6/2968) 0 * * Os_TE_638104 Chr12 26035339 26035340 - RIREX_LTR 8828 0.0014 (4/2959) 0 * Os_TE_638103 Os_TE_638103 Chr12 26035335 26035334 + RIREX_LTR 8828 0.0013 (4/2965) 0 * Os_TE_638104 Os_TE_638091 Chr12 26029990 26029991 - ORSgTEMT01700659 156 0.0017 (5/2968) 0 * * Os_TE_638090 Chr12 26029846 26029847 + SEVERIN-2 1952 0.0010 (3/2982) 0 * * Os_TE_638077 Chr12 26024958 26024959 + ORSiTERTOOT00381 4988 0.0047 (14/2991) 0 * Os_TE_638076 Os_TE_638076 Chr12 26024954 26024953 - SC-8_LTR 4951 0.0047 (14/2992) 0 * Os_TE_638077 Os_TE_638074 Chr12 26021528 26021527 - DITTO 244 0.0007 (2/2817) 0 * * Os_TE_638071 Chr12 26020549 26020550 + ORSgTEMT00700017 386 0.0017 (5/2987) 0 * * Os_TE_638069 Chr12 26019322 26019323 - COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_638068 Os_TE_638068 Chr12 26019318 26019317 + COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_638069 Os_TE_638066 Chr12 26016468 26016467 + ORSgTEMT00901798 232 0.6527 (1915/2934) 0 * * Os_TE_638064 Chr12 26016198 26016199 - DITAILA 257 0.6593 (1945/2950) 0 * * Os_TE_638063 Chr12 26016110 26016109 + ORSgTEMT00101194 329 0.0111 (33/2961) 0 * * Os_TE_638059 Chr12 26015071 26015070 + RETRO1_LTR 8314 0.0040 (12/2988) 0 * * Os_TE_638039 Chr12 26013097 26013096 + ORSgTEMT00900973 235 0.0232 (49/2112) -1 * * Os_TE_638037 Chr12 26013088 26013087 - RIREX_LTR 8828 0.0005 (1/2156) 0 * * Os_TE_638033 Chr12 26012064 26012065 + MPING 430 0.0003 (1/2963) 0 * Os_TE_638032 Os_TE_638032 Chr12 26012062 26012061 - MPING 430 0.0003 (1/2963) 0 * Os_TE_638033 Os_TE_638026 Chr12 26011563 26011564 - MPING 430 0.0003 (1/2883) 0 * * Os_TE_638014 Chr12 26008530 26008531 + TREP220 109 0.0102 (30/2930) 0 * * Os_TE_638000 Chr12 25998399 25998400 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_637999 Os_TE_637999 Chr12 25998395 25998394 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_638000 Os_TE_637937 Chr12 25976130 25976131 + TWIF 586 0.0010 (3/2947) 0 * Os_TE_637936 Os_TE_637936 Chr12 25976123 25976122 - ORSiTETNOOT00134 607 0.0007 (2/2940) 0 * Os_TE_637937 Os_TE_637895 Chr12 25951172 25942583 - MuDR3_OS 8604 0.3211 (950/2959) 1 Intact Os_TE_637891 Os_TE_637891 Chr12 25942583 25951169 - MuDR3_OS 8604 0.3249 (964/2967) 1 Intact Os_TE_637895 Os_TE_637877 Chr12 25936719 25936720 + ORSgTETNOOT00032 218 0.0003 (1/2977) 0 * * Os_TE_637873 Chr12 25936063 25936064 - AMYLTP 383 0.0003 (1/2967) 0 * * Os_TE_637868 Chr12 25935586 25935587 + NDNA1TNA_OS 334 0.0030 (9/2961) 0 * Os_TE_637867 Os_TE_637867 Chr12 25935584 25935583 - NDNA1TNA_OS 334 0.0030 (9/2996) 0 * Os_TE_637868 Os_TE_637866 Chr12 25935568 25935569 + NDNA2TNA_OS 346 0.0130 (39/2993) 0 * * Os_TE_637851 Chr12 25932437 25932438 + COPI2_LTR 4733 0.0598 (177/2958) 0 * Os_TE_637850 Os_TE_637850 Chr12 25932433 25932432 - COPI2_LTR 4733 0.0639 (189/2958) 0 * Os_TE_637851 Os_TE_637844 Chr12 25931392 25931391 - STOWAWAY44_OS 240 0.0004 (1/2827) 0 * * Os_TE_637830 Chr12 25928860 25928861 + INDITTO 263 0.0140 (41/2934) 0 * * Os_TE_637828 Chr12 25928702 25928703 + NDNA1TNA_OS 334 0.0004 (1/2835) 0 * * Os_TE_637827 Chr12 25928668 25928669 - NDNA1TNA_OS 334 0.0657 (190/2890) 0 * Os_TE_637826 Os_TE_637826 Chr12 25928666 25928665 + NDNA1TNA_OS 334 0.0641 (185/2887) 0 * Os_TE_637827 Os_TE_637823 Chr12 25927961 25927960 + COPIA2-LTR_OS 6433 0.0003 (1/2936) 0 * * Os_TE_637808 Chr12 25923655 25923656 + ORSgTETNOOT01668 244 0.0003 (1/2996) 0 * * Os_TE_637806 Chr12 25920660 25920661 - RIREX_LTR 8828 0.0003 (1/2996) 0 * Os_TE_637805 Os_TE_637805 Chr12 25920656 25920655 + RIREX_LTR 8828 0.0003 (1/2996) 0 * Os_TE_637806 Os_TE_637801 Chr12 25920094 25920095 - ORSgTEMT02400246 177 0.0013 (4/2989) 0 * * Os_TE_637792 Chr12 25917849 25917848 - TRUNCATOR 2918 0.0815 (241/2957) 0 * Os_TE_637791 Os_TE_637791 Chr12 25917848 25917849 + TRUNCATOR 2918 0.0805 (235/2918) 0 * Os_TE_637792 Os_TE_637789 Chr12 25916999 25917000 - SZ-9LTR 965 0.0809 (240/2965) 0 * Os_TE_637788 Os_TE_637788 Chr12 25916995 25916994 + SZ-9LTR 965 0.0787 (233/2962) 0 * Os_TE_637789 Os_TE_637784 Chr12 25916774 25916775 + RIRE2_LTR 11306 0.0140 (41/2927) 0 * * Os_TE_637773 Chr12 25914772 25914773 - MuDR3_OS 8604 0.0477 (129/2707) 0 * Os_TE_637772 Os_TE_637772 Chr12 25914763 25914762 - MuDR3_OS 8604 0.0896 (232/2589) 0 * Os_TE_637773 Os_TE_637763 Chr12 25908177 25908178 + MPING 430 0.0003 (1/2969) 0 * Os_TE_637762 Os_TE_637762 Chr12 25908175 25908174 - MPING 430 0.0003 (1/2966) 0 * Os_TE_637763 Os_TE_637761 Chr12 25908058 25908059 - MPING 430 0.0004 (1/2711) 0 * Os_TE_637760 Os_TE_637760 Chr12 25908056 25908055 + MPING 430 0.0003 (1/2975) 0 * Os_TE_637761 Os_TE_637757 Chr12 25907817 25907818 + ORSgTEMT01601591 242 0.0671 (198/2952) 0 * * Os_TE_637752 Chr12 25903450 25903451 + ORSiTERTOOT00226 792 0.0010 (3/2971) 0 * Os_TE_637751 Os_TE_637751 Chr12 25903446 25903445 - SZ-22_LTR 4403 0.0010 (3/2973) 0 * Os_TE_637752 Os_TE_637726 Chr12 25892817 25892818 - COPIA2-LTR_OS 6433 0.0007 (2/2983) 0 * Os_TE_637725 Os_TE_637725 Chr12 25892813 25892812 + COPIA2-LTR_OS 6433 0.0007 (2/2981) 0 * Os_TE_637726 Os_TE_637712 Chr12 25885683 25885684 + COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_637711 Os_TE_637711 Chr12 25885679 25885678 - COPI2_LTR 4733 0.0004 (1/2806) 0 * Os_TE_637712 Os_TE_637695 Chr12 25880859 25880860 + TWIF 586 0.0003 (1/2941) 0 * Os_TE_637694 Os_TE_637694 Chr12 25880852 25880851 - ORSiTETNOOT00144 607 0.0003 (1/2944) 0 * Os_TE_637695 Os_TE_637665 Chr12 25866020 25866021 + ORSgTEMT00500476 150 0.0013 (4/2987) 0 * * Os_TE_637658 Chr12 25864392 25864391 - COPIA1-LTR_OS 9292 0.7136 (2118/2968) 0 * Os_TE_637657 Os_TE_637657 Chr12 25864389 25864390 + SZ-5LTR 1223 0.7102 (2105/2964) 0 * Os_TE_637658 Os_TE_637656 Chr12 25864268 25857880 + RIREX_LTR 8828 0.2982 (885/2968) 1 Intact Os_TE_637648 Os_TE_637648 Chr12 25857880 25864268 - RIREX_LTR 8828 0.3095 (879/2840) 1 Intact Os_TE_637656 Os_TE_637634 Chr12 25843812 25843811 - ORSgTEMT01400014 209 0.6494 (1908/2938) 0 * * Os_TE_637628 Chr12 25842455 25842454 + STOWAWAY47_OS 148 0.7114 (2120/2980) 0 * * Os_TE_637626 Chr12 25842128 25842127 + INDITTO 263 0.6138 (1831/2983) 0 * * Os_TE_637618 Chr12 25841049 25840834 + ORSgTEMT01400040 213 0.2912 (845/2902) 1 Intact Os_TE_637616 Os_TE_637616 Chr12 25840801 25841049 + ORSgTEMT01400031 216 0.2995 (883/2948) 1 Intact Os_TE_637618 Os_TE_637604 Chr12 25830781 25830780 + STOWAWAY51_OS 246 0.3777 (1113/2947) 0 * Os_TE_637603 Os_TE_637603 Chr12 25830775 25830776 + ORSgTEMT01601591 242 0.3644 (1047/2873) 0 * Os_TE_637604 Os_TE_637601 Chr12 25828034 25828033 + ORSgTEMT01601591 242 0.0003 (1/2996) 0 * * Os_TE_637590 Chr12 25820677 25820676 + ORSgTEMT01601591 242 0.0003 (1/2984) 0 * * Os_TE_637564 Chr12 25812805 25812806 + OSTE33 1012 0.0008 (1/1239) 0 * * Os_TE_637548 Chr12 25809102 25809103 - COPI2_LTR 4733 0.0007 (2/2997) 0 * Os_TE_637547 Os_TE_637547 Chr12 25809098 25809097 + COPI2_LTR 4733 0.0007 (2/2997) 0 * Os_TE_637548 Os_TE_637546 Chr12 25808588 25808587 + ORSgTEMT01601591 242 0.0007 (2/2997) 0 * * Os_TE_637533 Chr12 25799822 25800047 + ORSgTEMT02400034 225 0.2891 (856/2961) 1 Intact * Os_TE_637530 Chr12 25798842 25798841 - ORSgTETNOOT01534 208 0.0974 (291/2989) 0 * Os_TE_637529 Os_TE_637529 Chr12 25798841 25798842 - COWARD 200 0.0947 (283/2989) 0 * Os_TE_637530 Os_TE_637518 Chr12 25788109 25788110 + ORSgTEMT00600360 369 0.0912 (271/2973) 0 * Os_TE_637517 Os_TE_637517 Chr12 25788108 25788107 - CASTAWAY 364 0.0980 (292/2981) 0 * Os_TE_637518 Os_TE_637494 Chr12 25782604 25782605 + HARB-1_OS 5166 0.0012 (3/2547) 0 * Os_TE_637493 Os_TE_637493 Chr12 25782602 25782601 - HARB-1_OS 5166 0.0012 (3/2540) 0 * Os_TE_637494 Os_TE_637492 Chr12 25782507 25782508 - ORSiTETNOOT00216 3569 0.0364 (90/2470) 0 * Os_TE_637491 Os_TE_637491 Chr12 25782500 25782499 + TWIFBIG 3567 0.0455 (114/2507) 0 * Os_TE_637492 Os_TE_637480 Chr12 25778990 25778861 - ORSgTEMT00502058 151 0.8984 (2449/2726) 1 Intact * Os_TE_637475 Chr12 25778252 25778251 + ORSgTEMT00500201 140 0.1285 (369/2872) 0 * * Os_TE_637459 Chr12 25777291 25777290 + OLO24 345 0.0542 (150/2770) 0 * * Os_TE_637455 Chr12 25776716 25776717 - SZ-50_LTR 11691 0.0535 (155/2897) 0 * * Os_TE_637444 Chr12 25771446 25771447 - SC-3_LTR 5748 0.0007 (2/2948) 0 * * Os_TE_637421 Chr12 25763058 25763057 + MERMITEB 1610 0.0825 (245/2968) 0 * * Os_TE_637420 Chr12 25762827 25762828 + HARB-1_OS 5166 0.0007 (2/2985) 0 * Os_TE_637419 Os_TE_637419 Chr12 25762825 25762824 - HARB-1_OS 5166 0.0007 (2/2963) 0 * Os_TE_637420 Os_TE_637415 Chr12 25761285 25761286 + SPMLIKE 10989 0.0003 (1/2961) 0 * * Os_TE_637414 Chr12 25761026 25761027 + COPI2_LTR 4733 0.0010 (3/2933) 0 * Os_TE_637413 Os_TE_637413 Chr12 25761022 25761021 - COPI2_LTR 4733 0.0010 (3/2935) 0 * Os_TE_637414 Os_TE_637412 Chr12 25761012 25761013 + COPIA2-LTR_OS 6433 0.0003 (1/2935) 0 * Os_TE_637411 Os_TE_637411 Chr12 25761008 25761007 - COPIA2-LTR_OS 6433 0.0003 (1/2937) 0 * Os_TE_637412 Os_TE_637410 Chr12 25760033 25760034 + RIRE2_LTR 11306 0.0003 (1/2989) 0 * Os_TE_637409 Os_TE_637409 Chr12 25760029 25760028 - RIRE2_LTR 11306 0.0007 (2/2990) 0 * Os_TE_637410 Os_TE_637381 Chr12 25743964 25743963 - ORSgTEMT00901363 251 0.4604 (1373/2982) 0 * * Os_TE_637379 Chr12 25743128 25743127 + ORSgTEMT01602004 234 0.0278 (74/2659) 0 * * Os_TE_637378 Chr12 25743125 25743126 - ORSgTEMT01602413 239 0.0237 (67/2823) 0 * Os_TE_637377 Os_TE_637377 Chr12 25743122 25743121 + ORSgTEMT01600891 233 0.0011 (3/2671) 0 * Os_TE_637378 Os_TE_637358 Chr12 25740047 25739824 - ORSgTEMT01600244 239 0.5491 (1605/2923) 1 Intact Os_TE_637356 Os_TE_637356 Chr12 25739790 25740047 + ORSgTEMT01601525 239 0.5595 (1668/2981) 1 Intact Os_TE_637358 Os_TE_637354 Chr12 25738933 25738934 + COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_637353 Os_TE_637353 Chr12 25738929 25738928 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_637354 Os_TE_637336 Chr12 25731755 25731756 - RETROSAT2LTR 12796 0.0455 (78/1715) 0 * * Os_TE_637329 Chr12 25729065 25727480 - CLOUD-7 495 0.5667 (1682/2968) 1 Intact * Os_TE_637325 Chr12 25727348 25727347 - TNR2A 152 0.0505 (82/1625) 0 * * Os_TE_637282 Chr12 25712815 25712816 + ORSgTEMT01400027 210 0.0261 (76/2917) 0 * * Os_TE_637278 Chr12 25711827 25711828 - GYPSY-A_LTR 8951 0.1123 (336/2993) 0 * * Os_TE_637273 Chr12 25708834 25708835 - MPING 430 0.0006 (1/1579) 0 * Os_TE_637272 Os_TE_637272 Chr12 25708832 25708831 + MPING 430 0.0006 (1/1590) 0 * Os_TE_637273 Os_TE_637263 Chr12 25704301 25704302 - SC-3_LTR 5748 0.0003 (1/2989) 0 * Os_TE_637262 Os_TE_637262 Chr12 25704297 25704296 + ORSiTERTOOT00296 5553 0.0003 (1/2988) 0 * Os_TE_637263 Os_TE_637261 Chr12 25703861 25703862 - SC-8_LTR 4951 0.0007 (2/2989) 0 * Os_TE_637260 Os_TE_637260 Chr12 25703857 25703856 + SC-8_LTR 4951 0.0007 (2/2990) 0 * Os_TE_637261 Os_TE_637259 Chr12 25703299 25703298 + ORSiTERTOOT00296 5553 0.0003 (1/2977) 0 * * Os_TE_637256 Chr12 25699323 25699322 + STOWAWAY51_OS 246 0.3001 (677/2256) 0 * Os_TE_637255 Os_TE_637255 Chr12 25699317 25699318 + ORSgTEMT01601591 242 0.4640 (1348/2905) 0 * Os_TE_637256 Os_TE_637252 Chr12 25698740 25698739 + ORSgTEMT00500512 153 0.0434 (129/2973) 0 * * Os_TE_637251 Chr12 25698673 25698672 - ORSgTEMT00501591 149 0.5169 (1480/2863) 0 * Os_TE_637250 Os_TE_637250 Chr12 25698672 25698673 - GAIJIN 147 0.5368 (1599/2979) 0 * Os_TE_637251 Os_TE_637243 Chr12 25696620 25696619 - COPI2_LTR 4733 0.0017 (5/2995) 0 * * Os_TE_637205 Chr12 25676515 25676514 - COPIA2-LTR_OS 6433 0.0005 (1/1892) 0 * * Os_TE_637199 Chr12 25674890 25674889 + UNIQUE 158 0.0004 (1/2831) 0 * * Os_TE_637134 Chr12 25652821 25652822 + ORSgTETNOOT00670 249 0.0138 (39/2824) 0 * Os_TE_637133 Os_TE_637133 Chr12 25652820 25652819 - ORSgTETNOOT01607 258 0.0131 (37/2831) 0 * Os_TE_637134 Os_TE_637124 Chr12 25646927 25646928 - TYPEH 309 0.0010 (3/2896) 0 * * Os_TE_637122 Chr12 25646328 25646329 - STOWAWAY51_OS 246 0.0003 (1/2973) 0 * * Os_TE_637110 Chr12 25640367 25640368 - ORSgTEMT00501035 149 0.0257 (77/2994) 0 * Os_TE_637109 Os_TE_637109 Chr12 25640365 25640364 + ORSgTEMT00500989 146 0.0251 (75/2993) 0 * Os_TE_637110 Os_TE_637105 Chr12 25635824 25635825 - SC-8_LTR 4951 0.0007 (2/2980) 0 * Os_TE_637104 Os_TE_637104 Chr12 25635820 25635819 + ORSiTERTOOT00381 4988 0.0007 (2/2974) 0 * Os_TE_637105 Os_TE_637096 Chr12 25630818 25630819 - COPIA2-LTR_OS 6433 0.0008 (1/1311) 0 * * Os_TE_637088 Chr12 25627134 25627135 - RETRO2_LTR 12874 0.0826 (241/2919) 0 * Os_TE_637087 Os_TE_637087 Chr12 25627130 25627129 + RETRO2_LTR 12874 0.0838 (245/2923) 0 * Os_TE_637088 Os_TE_637045 Chr12 25595360 25595361 - CPSC2_LTR 5202 0.0004 (1/2662) 0 * * Os_TE_637033 Chr12 25592761 25592762 - OSTONOR1_LTR 6440 0.2985 (763/2556) 0 * Os_TE_637032 Os_TE_637032 Chr12 25592757 25592756 + OSTONOR1_LTR 6440 0.2842 (716/2519) 0 * Os_TE_637033 Os_TE_637029 Chr12 25591635 25591636 - COPIA2-LTR_OS 6433 0.0004 (1/2650) 0 * * Os_TE_637005 Chr12 25577938 25577939 - SC-3_LTR 5748 0.0023 (7/2988) 0 * Os_TE_637004 Os_TE_637004 Chr12 25577934 25577933 + ORSiTERTOOT00296 5553 0.0023 (7/2988) 0 * Os_TE_637005 Os_TE_636977 Chr12 25568965 25568964 + TWIF 586 0.0005 (1/2002) 0 * * Os_TE_636962 Chr12 25558043 25558305 + F770 284 0.7987 (2353/2946) 1 Intact * Os_TE_636958 Chr12 25555412 25555413 - SC-8_LTR 4951 0.0003 (1/2991) 0 * Os_TE_636957 Os_TE_636957 Chr12 25555408 25555407 + SC-8_LTR 4951 0.0003 (1/2991) 0 * Os_TE_636958 Os_TE_636956 Chr12 25554846 25554847 + ORSiTERTOOT00296 5553 0.0003 (1/2989) 0 * Os_TE_636955 Os_TE_636955 Chr12 25554842 25554841 - SC-3_LTR 5748 0.0003 (1/2990) 0 * Os_TE_636956 Os_TE_636855 Chr12 25501000 25501001 - RETROSAT3_LTR 11537 0.0023 (7/2985) 0 * Os_TE_636854 Os_TE_636854 Chr12 25500996 25500995 + RETROSAT2LTRA 3112 0.0023 (7/2981) 0 * Os_TE_636855 Os_TE_636826 Chr12 25486851 25486852 + SZ-40LTR 2465 0.0023 (7/2995) 0 * Os_TE_636825 Os_TE_636825 Chr12 25486847 25486846 - GYPSY-A_LTR 8951 0.0023 (7/2996) 0 * Os_TE_636826 Os_TE_636824 Chr12 25485933 25485934 + COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_636823 Os_TE_636823 Chr12 25485929 25485928 - COPI2_LTR 4733 0.0007 (2/2988) 0 * Os_TE_636824 Os_TE_636813 Chr12 25481605 25481606 + COPI2_LTR 4733 0.0003 (1/2982) 0 * Os_TE_636812 Os_TE_636812 Chr12 25481601 25481600 - COPI2_LTR 4733 0.0003 (1/2984) 0 * Os_TE_636813 Os_TE_636786 Chr12 25473568 25473569 - F569 228 0.0057 (17/2983) 0 * Os_TE_636785 Os_TE_636785 Chr12 25473566 25473565 + F569 228 0.0057 (17/2977) 0 * Os_TE_636786 Os_TE_636769 Chr12 25472725 25472726 - HARB-1_OS 5166 0.0662 (194/2929) 0 * Os_TE_636768 Os_TE_636768 Chr12 25472723 25472722 + HARB-1_OS 5166 0.0682 (200/2934) 0 * Os_TE_636769 Os_TE_636729 Chr12 25468888 25468889 + ORSgTEMT00500411 151 0.0004 (1/2646) 0 * * Os_TE_636704 Chr12 25461185 25461186 - INDITTO 263 0.0030 (9/2983) 0 * * Os_TE_636697 Chr12 25459366 25459367 - ENSPM4_OS 11610 0.0013 (4/2982) 0 * * Os_TE_636674 Chr12 25455192 25455191 + ORSgTEMT00700017 386 0.0004 (1/2760) 0 * * Os_TE_636658 Chr12 25452561 25452562 + ORSiTERTOOT00028 8600 0.0004 (1/2635) 0 * Os_TE_636657 Os_TE_636657 Chr12 25452557 25452556 - TRUNCATOR2_LTR 2904 0.0004 (1/2656) 0 * Os_TE_636658 Os_TE_636653 Chr12 25451811 25451812 - ORSgTEMT01701882 154 0.0493 (146/2963) 0 * * Os_TE_636645 Chr12 25445780 25445779 - TRUNCATOR2_LTR 2904 0.0004 (1/2371) 0 * * Os_TE_636636 Chr12 25442398 25442397 + SEVERIN-2 1952 0.0502 (150/2986) 0 * * Os_TE_636623 Chr12 25432958 25432959 - RIREX_LTR 8828 0.0077 (23/2998) 0 * Os_TE_636622 Os_TE_636622 Chr12 25432954 25432953 + RIREX_LTR 8828 0.0080 (24/2999) 0 * Os_TE_636623 Os_TE_636604 Chr12 25429511 25429510 - MuDR4_OS 7610 0.0047 (14/2977) 0 * * Os_TE_636600 Chr12 25428809 25428810 - RETRO1_LTR 8314 0.0057 (17/2979) 0 * * Os_TE_636569 Chr12 25423791 25423790 + RIREX_LTR 8828 0.0003 (1/2961) 0 * * Os_TE_636548 Chr12 25417945 25417946 - STOWAWAY51_OS 246 0.0003 (1/2983) 0 * * Os_TE_636491 Chr12 25408308 25408307 - ENSPM4_OS 11610 0.0004 (1/2839) 0 * * Os_TE_636460 Chr12 25393002 25393001 + ORSgTEMT00700017 386 0.0015 (4/2625) 0 * Os_TE_636459 Os_TE_636459 Chr12 25392995 25392996 - ORSgTEMT00700002 381 0.0015 (4/2649) 0 * Os_TE_636460 Os_TE_636434 Chr12 25387028 25387027 - ORSgTEMT02400248 224 0.0014 (4/2803) 0 * * Os_TE_636390 Chr12 25367469 25367470 - ENSPM5_OS 9581 0.0004 (1/2796) 0 * * Os_TE_636380 Chr12 25363587 25363588 + MDR2 6967 0.0050 (14/2804) 0 * Os_TE_636379 Os_TE_636379 Chr12 25363579 25363578 + MDR2 6967 0.0050 (14/2802) 0 * Os_TE_636380 Os_TE_636351 Chr12 25358190 25358189 - DNAUN1_OS 408 0.0004 (1/2806) 0 * * Os_TE_636315 Chr12 25351455 25351454 - ORSgTETN00200001 10994 0.0022 (6/2776) 0 * * Os_TE_636292 Chr12 25343060 25343059 - STOWAWAY34_OS 256 0.0003 (1/2890) 0 * * Os_TE_636289 Chr12 25341290 25341289 + ORSgTETNOOT00032 218 0.0571 (168/2942) 0 * * Os_TE_636257 Chr12 25329141 25329142 - ORSiTETNOOT00134 607 0.0020 (6/2982) 0 * Os_TE_636256 Os_TE_636256 Chr12 25329134 25329133 + TWIFBIG 3567 0.0027 (8/2986) 0 * Os_TE_636257 Os_TE_636254 Chr12 25328187 25328186 + RIREX_LTR 8828 0.0003 (1/2995) 0 * * Os_TE_636195 Chr12 25306926 25306927 + SC-8_LTR 4951 0.0007 (2/2978) 0 * Os_TE_636194 Os_TE_636194 Chr12 25306922 25306921 - SC-8_LTR 4951 0.0007 (2/2981) 0 * Os_TE_636195 Os_TE_636185 Chr12 25297693 25297692 + STOWAWAY51_OS 246 0.0003 (1/2956) 0 * Os_TE_636184 Os_TE_636184 Chr12 25297687 25297688 + ORSgTEMT01601591 242 0.0003 (1/2968) 0 * Os_TE_636185 Os_TE_636131 Chr12 25288297 25288296 + TWIFB1 3737 0.0011 (3/2630) 0 * * Os_TE_636103 Chr12 25282076 25282075 - STOWAWAY44_OS 240 0.0013 (4/2992) 0 * Os_TE_636102 Os_TE_636102 Chr12 25282073 25282074 + STOWAWAY44_OS 240 0.0013 (4/2993) 0 * Os_TE_636103 Os_TE_636085 Chr12 25279071 25279072 + STOWAWAY9_OS 235 0.0003 (1/2978) 0 * * Os_TE_636048 Chr12 25257033 25257034 + SINE9_OS 293 0.0003 (1/2926) 0 * * Os_TE_636029 Chr12 25246734 25246735 + FOCUS 257 0.0003 (1/2991) 0 * Os_TE_636028 Os_TE_636028 Chr12 25246732 25246731 - FOCUS 257 0.0003 (1/2989) 0 * Os_TE_636029 Os_TE_635994 Chr12 25230246 25230247 + TRSA_OS 353 0.0003 (1/2877) 0 * * Os_TE_635983 Chr12 25228096 25228097 - ORSiTEMT01300001 950 0.0010 (3/2976) 0 * * Os_TE_635954 Chr12 25220371 25220372 + MPING 430 0.0003 (1/2962) 0 * * Os_TE_635931 Chr12 25214668 25214669 - ORSiTEMT01100035 500 0.0013 (4/2967) 0 * * Os_TE_635898 Chr12 25204938 25204939 + MPING 430 0.0003 (1/2983) 0 * Os_TE_635897 Os_TE_635897 Chr12 25204936 25204935 - MPING 430 0.0003 (1/2979) 0 * Os_TE_635898 Os_TE_635895 Chr12 25204505 25204506 + COPIA2-LTR_OS 6433 0.0017 (5/2989) 0 * Os_TE_635894 Os_TE_635894 Chr12 25204501 25204500 - COPIA2-LTR_OS 6433 0.0020 (6/2953) 0 * Os_TE_635895 Os_TE_635891 Chr12 25203039 25203038 - SZ-55_LTR 10318 0.0003 (1/2974) 0 * * Os_TE_635757 Chr12 25123289 25123288 - RIREX_LTR 8828 0.0020 (6/2993) 0 * * Os_TE_635754 Chr12 25121497 25121498 - ORSiTERTOOT00074 4935 0.0031 (9/2934) 0 * Os_TE_635753 Os_TE_635753 Chr12 25121493 25121492 + ORSiTERTOOT00074 4935 0.0037 (11/2943) 0 * Os_TE_635754 Os_TE_635686 Chr12 25098719 25098720 + SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_635685 Os_TE_635685 Chr12 25098715 25098714 - SC-8_LTR 4951 0.0003 (1/2994) 0 * Os_TE_635686 Os_TE_635644 Chr12 25069216 25069217 - ORSiTETNOOT00134 607 0.8783 (2504/2851) 0 * Os_TE_635643 Os_TE_635643 Chr12 25069209 25069208 + TWIF 586 0.8650 (2274/2629) 0 * Os_TE_635644 Os_TE_635618 Chr12 25052171 25052172 + ORSiTERTOOT00296 5553 0.0003 (1/2991) 0 * Os_TE_635617 Os_TE_635617 Chr12 25052167 25052166 - SC-3_LTR 5748 0.0003 (1/2991) 0 * Os_TE_635618 Os_TE_635599 Chr12 25034614 25034615 - ORSgTEMT02400179 221 0.0010 (3/2860) 0 * Os_TE_635598 Os_TE_635598 Chr12 25034613 25034612 - TYPEM 227 0.0010 (3/2874) 0 * Os_TE_635599 Os_TE_635565 Chr12 25018737 25018738 - STOWAWAY51_OS 246 0.0013 (4/2975) 0 * * Os_TE_635523 Chr12 25007634 25007635 + COPI2_LTR 4733 0.0003 (1/2997) 0 * Os_TE_635522 Os_TE_635522 Chr12 25007630 25007629 - COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_635523 Os_TE_635504 Chr12 25002854 25002855 - SC-4_LTR 5218 0.0003 (1/2920) 0 * Os_TE_635503 Os_TE_635503 Chr12 25002850 25002849 + SC-4_LTR 5218 0.0003 (1/2926) 0 * Os_TE_635504 Os_TE_635464 Chr12 24981956 24981955 - AMYLTP 383 0.0014 (4/2959) 0 * * Os_TE_635458 Chr12 24972610 24972611 + ORSiTERTOOT00088 856 0.0007 (2/2817) -1 * * Os_TE_635456 Chr12 24971871 24971872 + MERMITEA 1710 0.0007 (2/2966) 0 * * Os_TE_635429 Chr12 24959965 24959964 + SC-8_LTR 4951 0.0003 (1/2996) 0 * * Os_TE_635428 Chr12 24959217 24959216 + ORSgTEMT00100272 356 0.0010 (3/2991) 0 * Os_TE_635427 Os_TE_635427 Chr12 24959215 24959216 + ORSgTEMT00101341 314 0.0010 (3/2997) 0 * Os_TE_635428 Os_TE_635414 Chr12 24954322 24954323 + COPIA2-LTR_OS 6433 0.0028 (6/2173) 0 * Os_TE_635413 Os_TE_635413 Chr12 24954318 24954317 - COPIA2-LTR_OS 6433 0.0031 (7/2226) 0 * Os_TE_635414 Os_TE_635398 Chr12 24944816 24944817 + TWIF 586 0.0045 (13/2883) 0 * Os_TE_635397 Os_TE_635397 Chr12 24944809 24944808 - ORSiTETNOOT00134 607 0.0056 (16/2880) 0 * Os_TE_635398 Os_TE_635388 Chr12 24933723 24933724 - SC-3_LTR 5748 0.0003 (1/2974) 0 * Os_TE_635387 Os_TE_635387 Chr12 24933719 24933718 + ORSiTERTOOT00296 5553 0.0003 (1/2975) 0 * Os_TE_635388 Os_TE_635378 Chr12 24927476 24927477 + SC-8_LTR 4951 0.0003 (1/2985) 0 * Os_TE_635377 Os_TE_635377 Chr12 24927472 24927471 - SC-8_LTR 4951 0.0003 (1/2982) 0 * Os_TE_635378 Os_TE_635373 Chr12 24924360 24924359 - ORSgTEMT00400010 151 0.0007 (2/2954) 0 * * Os_TE_635367 Chr12 24923171 24923170 - STOWAWAY51_OS 246 0.0007 (2/2958) 0 * Os_TE_635366 Os_TE_635366 Chr12 24923168 24923169 - STOWAWAY51_OS 246 0.0007 (2/2968) 0 * Os_TE_635367 Os_TE_635342 Chr12 24913776 24913775 + RIREX_LTR 8828 0.0003 (1/2976) 0 * * Os_TE_635310 Chr12 24898191 24898192 + COPI2_LTR 4733 0.0007 (2/2968) 0 * * Os_TE_635309 Chr12 24898185 24898184 + RIREX_LTR 8828 0.0003 (1/2968) 0 * * Os_TE_635290 Chr12 24892223 24892224 + SEVERIN-2 1952 0.0003 (1/2979) 0 * * Os_TE_635284 Chr12 24888614 24888615 - SZ-9LTR 965 0.7919 (2371/2994) 0 * Os_TE_635283 Os_TE_635283 Chr12 24888611 24888610 + SZ-9LTR 965 0.7952 (2384/2998) 0 * Os_TE_635284 Os_TE_635276 Chr12 24887002 24887003 - RIREX_LTR 8828 0.7931 (2365/2982) 0 * Os_TE_635275 Os_TE_635275 Chr12 24886999 24886998 + RIREX_LTR 8828 0.7934 (2374/2992) 0 * Os_TE_635276 Os_TE_635271 Chr12 24885188 24885189 - COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_635270 Os_TE_635270 Chr12 24885184 24885183 + COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_635271 Os_TE_635269 Chr12 24885064 24885065 + COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_635268 Os_TE_635268 Chr12 24885060 24885059 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_635269 Os_TE_635267 Chr12 24884914 24884915 + KRISPIE 956 0.0895 (268/2995) 0 * * Os_TE_635266 Chr12 24884716 24884717 - COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_635265 Os_TE_635265 Chr12 24884712 24884711 + COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_635266 Os_TE_635206 Chr12 24858948 24858947 - TRUNCATOR 2918 0.0013 (4/2985) 0 * Os_TE_635205 Os_TE_635205 Chr12 24858947 24858948 + TRUNCATOR 2918 0.0017 (5/2984) 0 * Os_TE_635206 Os_TE_635179 Chr12 24851898 24851899 + Cassandra_OS-LTR 764 0.0013 (4/2990) 0 * * Os_TE_635178 Chr12 24851784 24851785 + RIREX_LTR 8828 0.0003 (1/2987) 0 * Os_TE_635177 Os_TE_635177 Chr12 24851780 24851779 - RIREX_LTR 8828 0.0003 (1/2992) 0 * Os_TE_635178 Os_TE_635144 Chr12 24837095 24837096 - LINE-4_OS 3662 0.0925 (273/2952) 0 * * Os_TE_635143 Chr12 24836777 24836778 + COPI2_LTR 4733 0.0003 (1/2964) 0 * * Os_TE_635132 Chr12 24828908 24828909 + COPI2_LTR 4733 0.0004 (1/2708) 0 * Os_TE_635131 Os_TE_635131 Chr12 24828904 24828903 - COPI2_LTR 4733 0.0007 (2/2709) 0 * Os_TE_635132 Os_TE_635130 Chr12 24828881 24828882 + ORSiTERTOOT00367 5639 0.0004 (1/2709) 0 * Os_TE_635129 Os_TE_635129 Chr12 24828877 24828876 - ORSiTERTOOT00367 5639 0.0004 (1/2708) 0 * Os_TE_635130 Os_TE_635118 Chr12 24825422 24825423 - ORSiTERTOOT00402 2660 0.0003 (1/2963) 0 * Os_TE_635117 Os_TE_635117 Chr12 24825418 24825417 + ORSiTERTOOT00402 2660 0.0003 (1/2951) 0 * Os_TE_635118 Os_TE_635112 Chr12 24822469 24822470 + COWARD-2 350 0.0003 (1/2943) 0 * * Os_TE_635102 Chr12 24820306 24820305 - MPING 430 0.0003 (1/2989) 0 * * Os_TE_635071 Chr12 24808031 24808030 - OSLINE1-4 4779 0.7563 (2259/2987) 0 * * Os_TE_635066 Chr12 24807521 24807522 + COPIA2-LTR_OS 6433 0.0020 (6/2994) 0 * Os_TE_635065 Os_TE_635065 Chr12 24807517 24807516 - COPIA2-LTR_OS 6433 0.0023 (7/2995) 0 * Os_TE_635066 Os_TE_635061 Chr12 24805320 24805321 - COPI2_LTR 4733 0.0004 (1/2485) 0 * * Os_TE_635038 Chr12 24797434 24797433 + INDITTO 263 0.0013 (4/2993) 0 * * Os_TE_635020 Chr12 24783181 24783182 + RETROSAT4_LTR 13504 0.0003 (1/2974) 0 * * Os_TE_635019 Chr12 24781568 24781569 - SZ-55_LTR 10318 0.0007 (2/2985) 0 * Os_TE_635018 Os_TE_635018 Chr12 24781564 24781563 + SZ-55_LTR 10318 0.0007 (2/2983) 0 * Os_TE_635019 Os_TE_635004 Chr12 24772923 24767170 + SC-3_LTR 5748 0.3146 (858/2727) 1 Intact Os_TE_635003 Os_TE_635003 Chr12 24767170 24772923 - SC-3_LTR 5748 0.3160 (863/2731) 1 Intact Os_TE_635004 Os_TE_635001 Chr12 24766195 24766196 + COPI2_LTR 4733 0.0003 (1/2990) 0 * Os_TE_635000 Os_TE_635000 Chr12 24766191 24766190 - COPI2_LTR 4733 0.0003 (1/2986) 0 * Os_TE_635001 Os_TE_634973 Chr12 24742030 24742029 + ORSgTETNOOT00908 242 0.0010 (3/2923) 0 * * Os_TE_634951 Chr12 24735026 24735025 - TRUNCATOR 2918 0.6689 (1994/2981) 0 * Os_TE_634950 Os_TE_634950 Chr12 24735025 24735026 + TRUNCATOR 2918 0.6694 (1992/2976) 0 * Os_TE_634951 Os_TE_634890 Chr12 24717532 24717531 + RIREX_LTR 8828 0.0024 (7/2866) 0 * * Os_TE_634881 Chr12 24709772 24709773 - SC-3_LTR 5748 0.0003 (1/2980) 0 * Os_TE_634880 Os_TE_634880 Chr12 24709768 24709767 + ORSiTERTOOT00296 5553 0.0003 (1/2984) 0 * Os_TE_634881 Os_TE_634752 Chr12 24671247 24671248 - HARB-1_OS 5166 0.0003 (1/2926) 0 * Os_TE_634751 Os_TE_634751 Chr12 24671245 24671244 + HARB-1_OS 5166 0.0003 (1/2931) 0 * Os_TE_634752 Os_TE_634748 Chr12 24669780 24669779 + HARB-1_OS 5166 0.0007 (2/2958) 0 * * Os_TE_634734 Chr12 24658731 24658732 - AMYLTP 383 0.0923 (276/2991) 0 * Os_TE_634733 Os_TE_634733 Chr12 24658722 24658721 + AMYLTP 383 0.0942 (282/2993) 0 * Os_TE_634734 Os_TE_634686 Chr12 24642967 24642968 - COPI2_LTR 4733 0.0003 (1/2987) 0 * Os_TE_634685 Os_TE_634685 Chr12 24642963 24642962 + COPI2_LTR 4733 0.0007 (2/2991) 0 * Os_TE_634686 Os_TE_634684 Chr12 24641621 24641622 - OSTE20 496 0.0004 (1/2851) 0 * * Os_TE_634677 Chr12 24639883 24639884 - ORSiTERTOOT00385 6000 0.0004 (1/2830) 0 * * Os_TE_634648 Chr12 24611962 24611961 - ORSgTERT00100663 207 0.0009 (1/1174) -1 * * Os_TE_634623 Chr12 24603188 24603187 + TEOS1 476 0.0008 (2/2583) 0 * * Os_TE_634561 Chr12 24586035 24586036 - MPING 430 0.0003 (1/2989) 0 * Os_TE_634560 Os_TE_634560 Chr12 24586033 24586032 + MPING 430 0.0003 (1/2991) 0 * Os_TE_634561 Os_TE_634552 Chr12 24584166 24577731 + COPIA2-LTR_OS 6433 0.3242 (954/2943) 1 Intact Os_TE_634551 Os_TE_634551 Chr12 24577731 24584166 - COPIA2-LTR_OS 6433 0.3283 (973/2964) 1 Intact Os_TE_634552 Os_TE_634549 Chr12 24577213 24577214 - INDITTO 263 0.6408 (1911/2982) 0 * Os_TE_634548 Os_TE_634548 Chr12 24577211 24577210 + INDITTO 263 0.6381 (1904/2984) 0 * Os_TE_634549 Os_TE_634547 Chr12 24576354 24576355 - COPI2_LTR 4733 0.0017 (5/2988) 0 * * Os_TE_634509 Chr12 24552493 24541681 + ENSPM4_OS 11610 0.3521 (908/2579) -1 Intact Os_TE_634507 Os_TE_634507 Chr12 24541680 24552492 - ENSPM4_OS 11610 0.3578 (920/2571) 1 Intact Os_TE_634509 Os_TE_634502 Chr12 24528388 24528387 + STOWAWAY50_OS 174 0.0004 (1/2444) 0 * * Os_TE_634498 Chr12 24525970 24526633 - OSTE24 683 0.2062 (417/2022) -1 Intact * Os_TE_634478 Chr12 24514897 24514896 + ORSgTETNOOT00908 242 0.0059 (6/1017) 0 * * Os_TE_634462 Chr12 24508064 24508063 + ORSgTEMT01601122 212 0.0011 (3/2624) 0 * * Os_TE_634451 Chr12 24503213 24503214 + ORSgTETNOOT01686 252 0.0004 (1/2640) 0 * Os_TE_634450 Os_TE_634450 Chr12 24503209 24503208 - ORSgTETNOOT00754 253 0.0004 (1/2638) 0 * Os_TE_634451 Os_TE_634416 Chr12 24496370 24496371 + TELIA 141 0.0003 (1/2986) 0 * Os_TE_634415 Os_TE_634415 Chr12 24496362 24496361 - TELIA 141 0.0003 (1/2988) 0 * Os_TE_634416 Os_TE_634414 Chr12 24495375 24495376 - RETROFIT6_LTR 4799 0.0934 (278/2978) 0 * Os_TE_634413 Os_TE_634413 Chr12 24495371 24495370 + RETROFIT6_LTR 4799 0.0930 (277/2977) 0 * Os_TE_634414 Os_TE_634378 Chr12 24479877 24479876 + ORSiTERTOOT00296 5553 0.0003 (1/2988) 0 * * Os_TE_634376 Chr12 24479290 24479291 - SC-3_LTR 5748 0.0007 (2/2920) 0 * * Os_TE_634343 Chr12 24464792 24464793 - COPI2_LTR 4733 0.0034 (10/2983) 0 * Os_TE_634342 Os_TE_634342 Chr12 24464788 24464787 + COPI2_LTR 4733 0.0033 (10/2987) 0 * Os_TE_634343 Os_TE_634336 Chr12 24462673 24462674 - RETROSAT5_LTR 13878 0.1264 (375/2967) 0 * Os_TE_634335 Os_TE_634335 Chr12 24462669 24462668 + ORSiTERT00200145 12238 0.1198 (354/2954) 0 * Os_TE_634336 Os_TE_634333 Chr12 24460611 24460612 + ORSiTERTOOT00296 5553 0.0003 (1/2988) 0 * Os_TE_634332 Os_TE_634332 Chr12 24460607 24460606 - SC-3_LTR 5748 0.0003 (1/2988) 0 * Os_TE_634333 Os_TE_634323 Chr12 24453815 24453814 + TNR2A 152 0.0003 (1/2988) 0 * * Os_TE_634319 Chr12 24453027 24453028 - COPI2_LTR 4733 0.0003 (1/2992) 0 * Os_TE_634318 Os_TE_634318 Chr12 24453023 24453022 + COPI2_LTR 4733 0.0003 (1/2990) 0 * Os_TE_634319 Os_TE_634317 Chr12 24452788 24452789 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_634316 Os_TE_634316 Chr12 24452784 24452783 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_634317 Os_TE_634313 Chr12 24452107 24452106 + COPIA2-LTR_OS 6433 0.0020 (6/2983) 0 * * Os_TE_634308 Chr12 24450443 24450444 + RIRE2_LTR 11306 0.0003 (1/2967) 0 * * Os_TE_634286 Chr12 24437711 24437712 + CASTAWAY 364 0.3594 (1076/2994) 0 * * Os_TE_634282 Chr12 24437049 24437048 + KIDDOC 275 0.0023 (7/2987) 0 * * Os_TE_634275 Chr12 24433520 24433521 - ORSgTERT00201216 11284 0.0003 (1/2984) 0 * * Os_TE_634227 Chr12 24416643 24416644 - COPI2_LTR 4733 0.0391 (117/2994) 0 * Os_TE_634226 Os_TE_634226 Chr12 24416639 24416638 + COPI2_LTR 4733 0.0394 (118/2994) 0 * Os_TE_634227 Os_TE_634216 Chr12 24414354 24414355 + WUWU 113 0.0020 (6/2986) 0 * * Os_TE_634215 Chr12 24414012 24414013 + COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_634214 Os_TE_634214 Chr12 24414008 24414007 - COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_634215 Os_TE_634211 Chr12 24409361 24409360 - TRUNCATOR2_LTR 2904 0.0378 (113/2986) 0 * * Os_TE_634191 Chr12 24396139 24396140 - COPIA2-LTR_OS 6433 0.0007 (2/2997) 0 * Os_TE_634190 Os_TE_634190 Chr12 24396135 24396134 + COPIA2-LTR_OS 6433 0.0007 (2/2997) 0 * Os_TE_634191 Os_TE_634163 Chr12 24380396 24380397 - ORSgTETNOOT01930 140 0.0020 (6/2985) 0 * Os_TE_634162 Os_TE_634162 Chr12 24380394 24380393 + ORSgTETNOOT01930 140 0.0020 (6/2982) 0 * Os_TE_634163 Os_TE_634155 Chr12 24379594 24379593 + HELITRON2_OS 15167 0.0003 (1/2993) 0 * * Os_TE_634139 Chr12 24373169 24373170 + SEVERIN-2 1952 0.0386 (115/2977) 0 * * Os_TE_634087 Chr12 24345917 24345918 + COPI2_LTR 4733 0.0003 (1/2984) 0 * Os_TE_634086 Os_TE_634086 Chr12 24345913 24345912 - COPI2_LTR 4733 0.0003 (1/2985) 0 * Os_TE_634087 Os_TE_634075 Chr12 24340969 24340968 - SZ-40LTR 2465 0.0005 (1/1992) 0 * * Os_TE_634063 Chr12 24334599 24329407 + SZ-62LTR 3649 0.6141 (1827/2975) 1 Intact * Os_TE_634049 Chr12 24329385 24329384 - SZ-62LTR 3649 0.1597 (389/2436) 0 * * Os_TE_634046 Chr12 24326548 24326549 + Cassandra_OS-LTR 764 0.0014 (4/2760) 0 * Os_TE_634045 Os_TE_634045 Chr12 24326544 24326543 - Cassandra_OS-LTR 764 0.0015 (4/2758) 0 * Os_TE_634046 Os_TE_634043 Chr12 24325582 24325583 + COPI2_LTR 4733 0.0004 (1/2755) 0 * Os_TE_634042 Os_TE_634042 Chr12 24325578 24325577 - COPI2_LTR 4733 0.0004 (1/2747) 0 * Os_TE_634043 Os_TE_634034 Chr12 24323303 24323304 + COPI2_LTR 4733 0.0003 (1/2986) 0 * Os_TE_634033 Os_TE_634033 Chr12 24323299 24323298 - COPI2_LTR 4733 0.0003 (1/2985) 0 * Os_TE_634034 Os_TE_634022 Chr12 24317985 24317984 - COPI2_LTR 4733 0.0003 (1/2983) 0 * * Os_TE_633995 Chr12 24299915 24299914 + TRUNCATOR 2918 0.0004 (1/2287) 0 * Os_TE_633994 Os_TE_633994 Chr12 24299914 24299915 - TRUNCATOR 2918 0.0004 (1/2287) 0 * Os_TE_633995 Os_TE_633977 Chr12 24295633 24295634 - SZ-25LTR 330 0.0022 (5/2294) 0 * Os_TE_633976 Os_TE_633976 Chr12 24295628 24295627 + COPI1_LTR 4721 0.0026 (6/2289) 0 * Os_TE_633977 Os_TE_633953 Chr12 24282359 24282360 - RIREX_LTR 8828 0.0008 (2/2552) 0 * Os_TE_633952 Os_TE_633952 Chr12 24282355 24282354 + RIREX_LTR 8828 0.0008 (2/2511) 0 * Os_TE_633953 Os_TE_633944 Chr12 24279819 24279820 - SZ-35LTR 3853 0.0031 (8/2581) 0 * Os_TE_633943 Os_TE_633943 Chr12 24279815 24279814 + RETROSAT4_LTR 13504 0.0031 (8/2582) 0 * Os_TE_633944 Os_TE_633938 Chr12 24278999 24278998 + ORSiTERTOOT00296 5553 0.0008 (2/2597) 0 * * Os_TE_633915 Chr12 24264291 24264290 - ORSgTEMT01601493 303 0.2603 (777/2985) 0 * Os_TE_633914 Os_TE_633914 Chr12 24264288 24264289 - ORSgTEMT01601432 239 0.2423 (709/2926) 0 * Os_TE_633915 Os_TE_633911 Chr12 24263366 24263365 - ORSgTEMT01602413 239 0.2417 (713/2950) 0 * Os_TE_633910 Os_TE_633910 Chr12 24263363 24263364 - ORSgTEMT01602413 239 0.2511 (747/2975) 0 * Os_TE_633911 Os_TE_633909 Chr12 24263071 24263070 + ORSiCMCM00100019 2717 0.0003 (1/2992) 0 * * Os_TE_633899 Chr12 24259347 24259346 - TEMPINDAS 4259 0.0003 (1/2981) 0 * * Os_TE_633892 Chr12 24253712 24253713 + TRUNCATOR 2918 0.0027 (8/2971) 0 * * Os_TE_633887 Chr12 24253115 24253116 + INDITTO 263 0.0020 (6/2950) 0 * * Os_TE_633880 Chr12 24245198 24245199 + COPI2_LTR 4733 0.0003 (1/2997) 0 * * Os_TE_633878 Chr12 24244512 24244513 + ORSiTERTOOT00226 792 0.0003 (1/2961) 0 * Os_TE_633877 Os_TE_633877 Chr12 24244508 24244507 - SZ-22_LTR 4403 0.0003 (1/2963) 0 * Os_TE_633878 Os_TE_633856 Chr12 24241186 24241187 - COPIA2-LTR_OS 6433 0.0177 (53/2992) 0 * Os_TE_633855 Os_TE_633855 Chr12 24241182 24241181 + COPIA2-LTR_OS 6433 0.0174 (52/2994) 0 * Os_TE_633856 Os_TE_633819 Chr12 24228887 24228888 + INDITTO 263 0.0003 (1/2989) 0 * Os_TE_633818 Os_TE_633818 Chr12 24228885 24228884 - INDITTO 263 0.0003 (1/2997) 0 * Os_TE_633819 Os_TE_633814 Chr12 24226855 24226854 - RIREX_LTR 8828 0.0003 (1/2975) 0 * * Os_TE_633803 Chr12 24214523 24214524 - SZ-62LTR 3649 0.0007 (2/2997) 0 * * Os_TE_633801 Chr12 24210820 24210819 - ORSgTEMT00700002 381 0.0003 (1/2981) 0 * Os_TE_633800 Os_TE_633800 Chr12 24210813 24210814 + ORSgTEMT00700017 386 0.0003 (1/2981) 0 * Os_TE_633801 Os_TE_633782 Chr12 24201460 24201461 + ORSgTETNOOT00908 242 0.0003 (1/2976) 0 * * Os_TE_633772 Chr12 24198935 24198934 + ORSiTERT00400073 425 0.0003 (1/2961) 0 * * Os_TE_633764 Chr12 24190439 24190440 - RETROSAT4_LTR 13504 0.0003 (1/2983) 0 * * Os_TE_633741 Chr12 24185906 24185907 + SC-4_LTR 5218 0.0003 (1/2904) 0 * Os_TE_633740 Os_TE_633740 Chr12 24185902 24185901 - SC-4_LTR 5218 0.0003 (1/2906) 0 * Os_TE_633741 Os_TE_633723 Chr12 24178539 24178540 - ORSiTETNOOT00216 3569 0.0091 (17/1870) 0 * Os_TE_633722 Os_TE_633722 Chr12 24178532 24178531 + TWIFBIG 3567 0.0101 (19/1873) 0 * Os_TE_633723 Os_TE_633677 Chr12 24162372 24162373 + TNR2A 152 0.0027 (8/2979) 0 * * Os_TE_633662 Chr12 24158949 24158948 + SPMLIKE 10989 0.0003 (1/2969) 0 * * Os_TE_633644 Chr12 24157668 24157667 + MPING 430 0.0131 (39/2981) 0 * * Os_TE_633634 Chr12 24157045 24157046 - ORSgTERT00201216 11284 0.0027 (8/2922) 0 * Os_TE_633633 Os_TE_633633 Chr12 24157041 24157040 - RIREX_LTR 8828 0.0027 (8/2922) 0 * Os_TE_633634 Os_TE_633622 Chr12 24153002 24153001 - SZ-62LTR 3649 0.3543 (1040/2935) 0 * * Os_TE_633621 Chr12 24152257 24152258 - STOLAB 312 0.0003 (1/2991) 0 * * Os_TE_633606 Chr12 24142239 24142240 + INDITTO 263 0.0634 (187/2948) 0 * * Os_TE_633578 Chr12 24129534 24129533 - ORSgTEMT00901723 248 0.0027 (8/2976) 0 * Os_TE_633577 Os_TE_633577 Chr12 24129530 24129531 + ORSgTEMT00901468 248 0.0030 (9/2981) 0 * Os_TE_633578 Os_TE_633573 Chr12 24128633 24128632 + RETROSAT4_LTR 13504 0.0014 (4/2945) 0 * Os_TE_633572 Os_TE_633572 Chr12 24128624 24128625 - SZ-35LTR 3853 0.0017 (5/2958) 0 * Os_TE_633573 Os_TE_633550 Chr12 24123845 24123846 - NDNA2TNA_OS 346 0.0026 (6/2323) 0 * * Os_TE_633545 Chr12 24119474 24119473 - OSTE24 683 0.0007 (2/2956) 0 * * Os_TE_633513 Chr12 24111376 24111375 + STOWAWAY41_OS 264 0.0030 (9/2991) 0 * * Os_TE_633494 Chr12 24103268 24103269 - GYPSY-A_LTR 8951 0.0265 (78/2945) 0 * Os_TE_633493 Os_TE_633493 Chr12 24103264 24103263 + GYPSY-A_LTR 8951 0.0259 (77/2973) 0 * Os_TE_633494 Os_TE_633487 Chr12 24102797 24102798 - RETRO2_LTR 12874 0.0082 (24/2920) 0 * * Os_TE_633466 Chr12 24096914 24096913 - DS-RICE2N 613 0.0003 (1/2968) 0 * * Os_TE_633459 Chr12 24095883 24095882 + ORSgTETN00200005 1121 0.0007 (2/2889) 0 * * Os_TE_633456 Chr12 24093545 24093544 - ORSgTETNOOT00053 263 0.0108 (32/2974) 0 * * Os_TE_633455 Chr12 24092847 24092848 + SINE1OS 127 0.0027 (8/2986) 0 * * Os_TE_633449 Chr12 24092228 24092227 + HARB-1_OS 5166 0.0017 (5/2991) 0 * * Os_TE_633448 Chr12 24091909 24091910 + ORSgTETNOOT01219 231 0.0007 (2/2989) 0 * Os_TE_633447 Os_TE_633447 Chr12 24091902 24091901 + ORSgTETNOOT00908 242 0.0007 (2/2988) 0 * Os_TE_633448 Os_TE_633427 Chr12 24070656 24070655 - STOWAWAY51_OS 246 0.0003 (1/2998) 0 * Os_TE_633426 Os_TE_633426 Chr12 24070653 24070654 - STOWAWAY51_OS 246 0.0003 (1/2998) 0 * Os_TE_633427 Os_TE_633424 Chr12 24069454 24069455 + CASTAWAY-3 314 0.0027 (8/2981) 0 * * Os_TE_633422 Chr12 24068495 24068496 - RETROFIT_LTR 4866 0.0003 (1/2996) 0 * Os_TE_633421 Os_TE_633421 Chr12 24068492 24068491 + ORSiTERTOOT00033 4884 0.0003 (1/2996) 0 * Os_TE_633422 Os_TE_633407 Chr12 24063163 24063164 - MPING 430 0.0020 (6/2996) 0 * Os_TE_633406 Os_TE_633406 Chr12 24063161 24063160 + MPING 430 0.0020 (6/2997) 0 * Os_TE_633407 Os_TE_633380 Chr12 24057107 24057108 + MPING 430 0.0003 (1/2990) 0 * * Os_TE_633375 Chr12 24056088 24056089 + INDITTO 263 0.0592 (177/2992) 0 * Os_TE_633374 Os_TE_633374 Chr12 24056086 24056085 - INDITTO 263 0.0595 (178/2991) 0 * Os_TE_633375 Os_TE_633353 Chr12 24043049 24043050 + STOWAWAY51_OS 246 0.0034 (10/2966) 0 * * Os_TE_633352 Chr12 24040556 24040557 + RETRO1_LTR 8314 0.0303 (73/2408) 0 * Os_TE_633351 Os_TE_633351 Chr12 24040552 24040551 - RETRO2A_LTR 12895 0.0279 (68/2436) 0 * Os_TE_633352 Os_TE_633342 Chr12 24036452 24036451 - AMYLTP 383 0.0645 (193/2993) 0 * * Os_TE_633332 Chr12 24029691 24029692 - Cassandra_OS-LTR 764 0.0024 (7/2943) 0 * * Os_TE_633331 Chr12 24029411 24029410 + SZ-40LTR 2465 0.0038 (11/2879) 0 * * Os_TE_633283 Chr12 24017067 24017068 - TRUNCATOR2_LTR 2904 0.3612 (1070/2962) 0 * Os_TE_633282 Os_TE_633282 Chr12 24017063 24017062 + TRUNCATOR2_LTR 2904 0.3575 (1051/2940) 0 * Os_TE_633283 Os_TE_633265 Chr12 24014412 24014413 + OSMAR1 5265 0.0017 (5/2995) 0 * * Os_TE_633254 Chr12 24009286 24009285 + SEVERIN-2 1952 0.0401 (117/2919) 0 * * Os_TE_633253 Chr12 24009255 24009254 + ORSgTEMT01601591 242 0.0288 (83/2884) 0 * Os_TE_633252 Os_TE_633252 Chr12 24009252 24009253 + ORSgTEMT01601591 242 0.0322 (95/2948) 0 * Os_TE_633253 Os_TE_633248 Chr12 24008597 24008596 + ORSgTEMT01601591 242 0.0027 (8/2953) 0 * Os_TE_633247 Os_TE_633247 Chr12 24008594 24008595 + ORSgTEMT01601591 242 0.0021 (6/2926) 0 * Os_TE_633248 Os_TE_633242 Chr12 24006369 24006368 - STOWAWAY44_OS 240 0.0182 (54/2965) 0 * Os_TE_633241 Os_TE_633241 Chr12 24006366 24006367 + STOWAWAY44_OS 240 0.0143 (41/2863) 0 * Os_TE_633242 Os_TE_633235 Chr12 24004030 24004029 - ORSgTETN00200001 10994 0.0027 (8/2951) 0 * * Os_TE_633220 Chr12 24000338 24000337 + ORSgTEMT01601934 207 0.2489 (236/948) -1 * Os_TE_633219 Os_TE_633219 Chr12 24000334 24000335 + ORSgTEMT01601934 207 0.2649 (253/955) 0 * Os_TE_633220 Os_TE_633212 Chr12 23995499 23995498 + ORSgTEMT01600662 238 0.0055 (10/1817) 0 * * Os_TE_633196 Chr12 23990595 23990594 + ORSgTETNOOT02577 232 0.0028 (5/1783) 0 * * Os_TE_633165 Chr12 23980290 23975707 - CLOUD 734 0.5143 (1495/2907) 1 Intact Os_TE_633163 Os_TE_633163 Chr12 23975707 23980289 - CLOUD 734 0.4968 (1419/2856) 1 Intact Os_TE_633165 Os_TE_633156 Chr12 23975026 23975025 - SZ-35LTR 3853 0.0061 (17/2784) 0 * * Os_TE_633126 Chr12 23960200 23960201 - ORSiTETNOOT00134 607 0.0034 (10/2985) 0 * * Os_TE_633124 Chr12 23959844 23959845 - RETROSAT5_LTR 13878 0.0027 (8/2994) 0 * Os_TE_633123 Os_TE_633123 Chr12 23959840 23959839 + SZ-67LTR 1540 0.0028 (8/2837) 0 * Os_TE_633124 Os_TE_633121 Chr12 23957242 23957243 - RETRO1_LTR 8314 0.0037 (11/2988) 0 * Os_TE_633120 Os_TE_633120 Chr12 23957238 23957237 + RETRO2A_LTR 12895 0.0037 (11/2986) 0 * Os_TE_633121 Os_TE_633119 Chr12 23955953 23955954 - RIREX_LTR 8828 0.0004 (1/2710) 0 * Os_TE_633118 Os_TE_633118 Chr12 23955949 23955948 - RIREX_LTR 8828 0.0004 (1/2856) 0 * Os_TE_633119 Os_TE_633106 Chr12 23943747 23943748 + COPIA2-LTR_OS 6433 0.0278 (83/2988) 0 * Os_TE_633105 Os_TE_633105 Chr12 23943743 23943742 - COPIA2-LTR_OS 6433 0.0275 (82/2986) 0 * Os_TE_633106 Os_TE_633098 Chr12 23941576 23941575 + F524 291 0.1902 (518/2724) 0 * * Os_TE_633083 Chr12 23927036 23927037 - ORSiTERTOOT00402 2660 0.0003 (1/2997) 0 * Os_TE_633082 Os_TE_633082 Chr12 23927032 23927031 + ORSiTERTOOT00402 2660 0.0003 (1/2997) 0 * Os_TE_633083 Os_TE_633079 Chr12 23925849 23925850 - COPIA2-LTR_OS 6433 0.0010 (3/2994) 0 * Os_TE_633078 Os_TE_633078 Chr12 23925845 23925844 + COPIA2-LTR_OS 6433 0.0010 (3/2994) 0 * Os_TE_633079 Os_TE_633068 Chr12 23919428 23919429 + COPI2_LTR 4733 0.0044 (13/2983) 0 * Os_TE_633067 Os_TE_633067 Chr12 23919424 23919423 - COPI2_LTR 4733 0.0074 (22/2991) 0 * Os_TE_633068 Os_TE_633065 Chr12 23917831 23917832 - HARB-1_OS 5166 0.0003 (1/2902) 0 * Os_TE_633064 Os_TE_633064 Chr12 23917829 23917828 + HARB-1_OS 5166 0.0003 (1/2993) 0 * Os_TE_633065 Os_TE_633043 Chr12 23907061 23906869 + ORSgTETNOOT00908 242 0.7551 (2201/2915) 1 Intact * Os_TE_633040 Chr12 23906619 23906618 - STOWAWAY14_OS 258 0.6705 (1949/2907) 0 * * Os_TE_633032 Chr12 23905041 23905040 - ORSgTETNOOT01413 258 0.0021 (6/2887) 0 * * Os_TE_633010 Chr12 23903547 23903548 + ORSgTEMT01601122 212 0.0003 (1/2953) 0 * * Os_TE_632993 Chr12 23900315 23900314 - NDNA1TNA_OS 334 0.0253 (74/2929) 0 * * Os_TE_632986 Chr12 23898286 23898285 + ORSgTETNOOT01219 231 0.0003 (1/2870) 0 * * Os_TE_632977 Chr12 23881462 23881463 + NDNA1TNA_OS 334 0.0017 (5/2985) 0 * Os_TE_632976 Os_TE_632976 Chr12 23881460 23881459 - NDNA1TNA_OS 334 0.0017 (5/2982) 0 * Os_TE_632977 Os_TE_632975 Chr12 23881180 23881181 - COPI2_LTR 4733 0.0003 (1/2989) 0 * Os_TE_632974 Os_TE_632974 Chr12 23881176 23881175 + COPI2_LTR 4733 0.0003 (1/2989) 0 * Os_TE_632975 Os_TE_632971 Chr12 23879627 23879294 + NDNA1TNA_OS 334 0.3107 (919/2958) 1 Intact * Os_TE_632959 Chr12 23877458 23877459 - OSTE33 1012 0.0003 (1/2959) 0 * * Os_TE_632942 Chr12 23874056 23874055 + NDNA1TNA_OS 334 0.0027 (8/2960) 0 * * Os_TE_632930 Chr12 23870034 23870033 - ORSgTEMT01601432 239 0.0058 (17/2951) 0 * Os_TE_632929 Os_TE_632929 Chr12 23870031 23870032 + ORSgTEMT01602181 239 0.0051 (15/2960) 0 * Os_TE_632930 Os_TE_632922 Chr12 23868781 23868782 - MPING 430 0.0003 (1/2962) 0 * Os_TE_632921 Os_TE_632921 Chr12 23868779 23868778 + MPING 430 0.0003 (1/2962) 0 * Os_TE_632922 Os_TE_632920 Chr12 23868586 23868585 + OSTE20 496 0.0003 (1/2889) 0 * * Os_TE_632917 Chr12 23868087 23868088 - COPIA2-LTR_OS 6433 0.0035 (10/2890) 0 * Os_TE_632916 Os_TE_632916 Chr12 23868083 23868082 + COPIA2-LTR_OS 6433 0.0027 (8/2966) 0 * Os_TE_632917 Os_TE_632888 Chr12 23857155 23857156 - COPI2_LTR 4733 0.0007 (2/2911) 0 * Os_TE_632887 Os_TE_632887 Chr12 23857151 23857150 + COPI2_LTR 4733 0.0010 (3/2908) 0 * Os_TE_632888 Os_TE_632884 Chr12 23855792 23855793 - INDITTO 263 0.2544 (720/2830) 0 * Os_TE_632883 Os_TE_632883 Chr12 23855790 23855789 + INDITTO 263 0.2438 (726/2978) 0 * Os_TE_632884 Os_TE_632873 Chr12 23854575 23854576 - MERMITE18E 1528 0.0022 (6/2697) 0 * * Os_TE_632872 Chr12 23854561 23854562 + MuDR3_OS 8604 0.0854 (244/2857) 0 * Os_TE_632871 Os_TE_632871 Chr12 23854553 23854552 - MuDR3_OS 8604 0.0732 (207/2827) 0 * Os_TE_632872 Os_TE_632860 Chr12 23852589 23852590 - COPIA2-LTR_OS 6433 0.0003 (1/2986) 0 * Os_TE_632859 Os_TE_632859 Chr12 23852585 23852584 + COPIA2-LTR_OS 6433 0.0003 (1/2984) 0 * Os_TE_632860 Os_TE_632856 Chr12 23849007 23849008 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_632855 Os_TE_632855 Chr12 23849003 23849002 + COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_632856 Os_TE_632854 Chr12 23848348 23848349 - RIREX_LTR 8828 0.0007 (2/2992) 0 * Os_TE_632853 Os_TE_632853 Chr12 23848344 23848343 + RIREX_LTR 8828 0.0007 (2/2989) 0 * Os_TE_632854 Os_TE_632846 Chr12 23840216 23840217 + ORSiTERTOOT00296 5553 0.0020 (6/2983) 0 * Os_TE_632845 Os_TE_632845 Chr12 23840212 23840211 - SC-3_LTR 5748 0.0017 (5/2982) 0 * Os_TE_632846 Os_TE_632822 Chr12 23829694 23829695 + OSTE33 1012 0.0328 (97/2954) 0 * * Os_TE_632818 Chr12 23828640 23828641 + SC-8_LTR 4951 0.0007 (2/2991) 0 * Os_TE_632817 Os_TE_632817 Chr12 23828636 23828635 - SC-8_LTR 4951 0.0003 (1/2989) 0 * Os_TE_632818 Os_TE_632812 Chr12 23826025 23826026 - SC-3_LTR 5748 0.0003 (1/2987) 0 * Os_TE_632811 Os_TE_632811 Chr12 23826021 23826020 + ORSiTERTOOT00296 5553 0.0003 (1/2988) 0 * Os_TE_632812 Os_TE_632810 Chr12 23825530 23825531 + STOWAWAY21_OS 243 0.0023 (7/2983) 0 * * Os_TE_632790 Chr12 23814905 23814906 + OSTE33 1012 0.4048 (1212/2994) 0 * Os_TE_632789 Os_TE_632789 Chr12 23814896 23814895 + OSTE33 1012 0.3997 (1190/2977) 0 * Os_TE_632790 Os_TE_632781 Chr12 23811186 23811187 + ORSiTERTOOT00333 4719 0.0020 (6/2999) 0 * Os_TE_632780 Os_TE_632780 Chr12 23811183 23811182 - ORSiTERTOOT00333 4719 0.0020 (6/2994) 0 * Os_TE_632781 Os_TE_632772 Chr12 23806988 23806989 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * * Os_TE_632756 Chr12 23802077 23802078 + ORSgTETNOOT01668 244 0.0019 (5/2696) 0 * * Os_TE_632750 Chr12 23800608 23801687 + ORSgTERTOOT00009 12852 0.2609 (766/2936) 1 Intact * Os_TE_632732 Chr12 23791920 23791921 - TESSBIG 4057 0.2178 (647/2970) 0 * Os_TE_632731 Os_TE_632731 Chr12 23791913 23791912 + TESSBIG 4057 0.2211 (657/2972) 0 * Os_TE_632732 Os_TE_632720 Chr12 23790227 23790226 - NDNA1TNA_OS 334 0.0071 (21/2948) 0 * * Os_TE_632605 Chr12 23717438 23717439 + ORSgTETNOOT00908 242 0.0058 (15/2565) 0 * * Os_TE_632603 Chr12 23716540 23712944 - ORSiTETNOOT00200 3563 0.2386 (700/2934) 1 Intact Os_TE_632602 Os_TE_632602 Chr12 23712944 23716539 + TWIFBIG 3567 0.2512 (747/2974) 1 Intact Os_TE_632603 Os_TE_632592 Chr12 23701017 23701018 + AMYLTP 383 0.0020 (6/2935) 0 * Os_TE_632591 Os_TE_632591 Chr12 23701009 23701008 - AMYLTP 383 0.0014 (4/2940) 0 * Os_TE_632592 Os_TE_632585 Chr12 23700122 23700121 + RIRE2_LTR 11306 0.0324 (97/2993) 0 * * Os_TE_632573 Chr12 23693950 23693949 - STOWAWAY36_OS 268 0.0003 (1/2995) 0 * * Os_TE_632564 Chr12 23687150 23687151 - ORSgTEMT02000041 194 0.0003 (1/2978) 0 * * Os_TE_632553 Chr12 23685175 23685176 + COPI2_LTR 4733 0.0020 (6/2984) 0 * Os_TE_632552 Os_TE_632552 Chr12 23685171 23685170 - COPI2_LTR 4733 0.0023 (7/2985) 0 * Os_TE_632553 Os_TE_632550 Chr12 23683154 23683155 + RIREX_LTR 8828 0.0010 (3/2991) 0 * Os_TE_632549 Os_TE_632549 Chr12 23683150 23683149 - RIREX_LTR 8828 0.0010 (3/2990) 0 * Os_TE_632550 Os_TE_632537 Chr12 23669489 23669488 - ORSgTEMT01601432 239 0.0004 (1/2434) 0 * * Os_TE_632532 Chr12 23667960 23667961 - OLO24 345 0.0033 (8/2451) 0 * Os_TE_632531 Os_TE_632531 Chr12 23667958 23667957 + OLO24 345 0.0029 (7/2446) 0 * Os_TE_632532 Os_TE_632522 Chr12 23666683 23666684 - NDNA1TNA_OS 334 0.0400 (80/1998) 0 * Os_TE_632521 Os_TE_632521 Chr12 23666681 23666680 + NDNA1TNA_OS 334 0.0389 (79/2029) 0 * Os_TE_632522 Os_TE_632515 Chr12 23663068 23663069 + INDITTO 263 0.0258 (77/2990) 0 * Os_TE_632514 Os_TE_632514 Chr12 23663066 23663065 - INDITTO 263 0.0258 (77/2990) 0 * Os_TE_632515 Os_TE_632507 Chr12 23659595 23659596 + COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_632506 Os_TE_632506 Chr12 23659591 23659590 - COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_632507 Os_TE_632493 Chr12 23655576 23643550 - MuDR3_OS 8604 0.3351 (996/2972) 1 Intact Os_TE_632478 Os_TE_632478 Chr12 23643546 23651545 + MuDR3_OS 8604 0.3161 (910/2879) 1 Intact Os_TE_632493 Os_TE_632381 Chr12 23621492 23621491 + ORSgTEMT01601122 212 0.1259 (375/2978) 0 * * Os_TE_632376 Chr12 23620717 23620718 - SC-3_LTR 5748 0.0010 (3/2875) 0 * Os_TE_632375 Os_TE_632375 Chr12 23620713 23620712 + ORSiTERTOOT00296 5553 0.0010 (3/2903) 0 * Os_TE_632376 Os_TE_632373 Chr12 23616984 23616983 - MuDR3_OS 8604 0.0003 (1/2996) 0 * * Os_TE_632357 Chr12 23599871 23599872 + AMYLTP 383 0.0659 (197/2989) 0 * * Os_TE_632329 Chr12 23572647 23572646 + RETRO2A_LTR 12895 0.3853 (825/2141) 0 * * Os_TE_632322 Chr12 23572116 23572115 - NDNA1TNA_OS 334 0.0007 (2/2891) 0 * * Os_TE_632306 Chr12 23569863 23569864 - RIRE2_LTR 11306 0.0119 (16/1346) 0 * Os_TE_632305 Os_TE_632305 Chr12 23569859 23569858 - ORSgTERT00201216 11284 0.0118 (16/1356) 0 * Os_TE_632306 Os_TE_632276 Chr12 23566196 23566197 - ORSgTETNOOT01607 258 0.0021 (6/2809) 0 * * Os_TE_632239 Chr12 23555585 23555586 + AMYLTP 383 0.0029 (6/2094) 0 * Os_TE_632238 Os_TE_632238 Chr12 23555577 23555576 - AMYLTP 383 0.0020 (4/2037) 0 * Os_TE_632239 Os_TE_632236 Chr12 23554354 23554353 - ORSgTEMT01400022 212 0.1451 (432/2978) 0 * Os_TE_632235 Os_TE_632235 Chr12 23554341 23554342 - ORSgTEMT01400022 212 0.1499 (448/2989) 0 * Os_TE_632236 Os_TE_632232 Chr12 23549830 23549829 - ORSgTEMT01701882 154 0.0017 (5/2964) 0 * Os_TE_632231 Os_TE_632231 Chr12 23549827 23549828 + STOWAWAY50_OS 174 0.0013 (4/2969) 0 * Os_TE_632232 Os_TE_632220 Chr12 23543734 23543735 - ORSgTEMT01700029 143 0.0916 (110/1201) 0 * * Os_TE_632212 Chr12 23541100 23541101 + ORSgTEMT01701858 154 0.0979 (116/1185) 0 * * Os_TE_632207 Chr12 23540408 23540409 - ORSgTEMT01602413 239 0.0902 (109/1209) 0 * * Os_TE_632194 Chr12 23532968 23532969 + RETRO2_LTR 12874 0.0062 (18/2925) 0 * Os_TE_632193 Os_TE_632193 Chr12 23532964 23532963 - RETRO1_LTR 8314 0.0072 (21/2925) 0 * Os_TE_632194 Os_TE_632191 Chr12 23532442 23532441 - ORSgTEMT01400015 213 0.6036 (1727/2861) 0 * Os_TE_632190 Os_TE_632190 Chr12 23532434 23532435 + ORSgTEMT01400032 215 0.6052 (1720/2842) 0 * Os_TE_632191 Os_TE_632174 Chr12 23529079 23528821 - STOWAWAY17_OS 259 0.5266 (1486/2822) 1 Intact Os_TE_632172 Os_TE_632172 Chr12 23528820 23529079 + ORSgTETNOOT00728 258 0.5083 (1495/2941) 1 Intact Os_TE_632174 Os_TE_632169 Chr12 23528650 23528651 - ORSgTEMT01600750 238 0.5027 (1465/2914) 0 * * Os_TE_632164 Chr12 23526240 23526448 - ORSgTEMT01602310 229 0.5110 (1493/2922) 1 Intact * Os_TE_632150 Chr12 23524338 23524337 + COPIA2-LTR_OS 6433 0.0003 (1/2888) 0 * * Os_TE_632138 Chr12 23522191 23522192 + OSTE33 1012 0.0003 (1/2991) 0 * Os_TE_632137 Os_TE_632137 Chr12 23522182 23522181 + OSTE33 1012 0.0003 (1/2993) 0 * Os_TE_632138 Os_TE_632120 Chr12 23513531 23513532 + RETRO2_LTR 12874 0.0050 (15/2989) 0 * Os_TE_632119 Os_TE_632119 Chr12 23513527 23513526 - RETRO2_LTR 12874 0.0054 (16/2987) 0 * Os_TE_632120 Os_TE_632075 Chr12 23491734 23491735 - ORSgTEMT01600550 229 0.6345 (1823/2873) 0 * Os_TE_632074 Os_TE_632074 Chr12 23491731 23491730 - TREP215 239 0.6267 (1771/2826) 0 * Os_TE_632075 Os_TE_632073 Chr12 23491728 23491729 + ORSgTEMT01600662 238 0.6356 (1830/2879) 0 * * Os_TE_632070 Chr12 23491177 23491178 - MERMITEA 1710 0.0060 (18/2983) 0 * Os_TE_632069 Os_TE_632069 Chr12 23491169 23491168 - MERMITEA 1710 0.0064 (19/2983) 0 * Os_TE_632070 Os_TE_632056 Chr12 23488313 23488312 + ORSgTETNOOT00032 218 0.0143 (42/2930) 0 * * Os_TE_632055 Chr12 23487882 23487883 + RETRO2A_LTR 12895 0.0452 (34/752) -1 * * Os_TE_632036 Chr12 23481177 23481176 + ORSgTEMT01601934 207 0.0027 (8/2945) 0 * * Os_TE_632035 Chr12 23481174 23481175 - ORSgTEMT01601432 239 0.0028 (8/2868) 0 * Os_TE_632034 Os_TE_632034 Chr12 23481171 23481170 - ORSgTEMT01600650 234 0.0028 (8/2875) 0 * Os_TE_632035 Os_TE_632032 Chr12 23480457 23478912 - CLOUD-6 508 0.8693 (1004/1155) 1 Intact Os_TE_632031 Os_TE_632031 Chr12 23478911 23480457 - CLOUD-6 508 0.3737 (1024/2740) 1 Intact Os_TE_632032 Os_TE_632028 Chr12 23476714 23476715 + ORSgTETNOOT02309 137 0.0190 (56/2954) 0 * Os_TE_632027 Os_TE_632027 Chr12 23476709 23476708 - ORSgTEMT00500675 140 0.0167 (49/2934) 0 * Os_TE_632028 Os_TE_631997 Chr12 23468006 23468007 - RETROSAT3_LTR 11537 0.0265 (79/2983) 0 * * Os_TE_631986 Chr12 23467047 23467048 + AMYLTP 383 0.0030 (9/2960) 0 * * Os_TE_631983 Chr12 23466736 23466735 - TRUNCATOR2_LTR 2904 0.0017 (5/2943) 0 * * Os_TE_631982 Chr12 23466634 23466635 - RETRO2_LTR 12874 0.0003 (1/2982) 0 * Os_TE_631981 Os_TE_631981 Chr12 23466630 23466629 + ORSgTERTOOT00009 12852 0.0003 (1/2979) 0 * Os_TE_631982 Os_TE_631974 Chr12 23465597 23465596 + ORSiCMCM00100019 2717 0.0283 (84/2972) 0 * * Os_TE_631963 Chr12 23463833 23463834 + NDNA2TNA_OS 346 0.0027 (8/2998) 0 * Os_TE_631962 Os_TE_631962 Chr12 23463831 23463830 - NDNA2TNA_OS 346 0.0030 (9/2996) 0 * Os_TE_631963 Os_TE_631958 Chr12 23461244 23461243 - ORSgTEMT01601208 238 0.0294 (88/2989) 0 * Os_TE_631957 Os_TE_631957 Chr12 23461241 23461242 - ORSgTEMT01600639 228 0.0282 (84/2982) 0 * Os_TE_631958 Os_TE_631950 Chr12 23456863 23456862 + ORSgTEMT01601049 237 0.0472 (139/2943) 0 * Os_TE_631949 Os_TE_631949 Chr12 23456860 23456861 + ORSgTEMT01602119 229 0.0487 (144/2955) 0 * Os_TE_631950 Os_TE_631916 Chr12 23446989 23446988 + ORSgTEMT00100560 340 0.0392 (116/2962) 0 * * Os_TE_631891 Chr12 23435850 23435851 - RIREX_LTR 8828 0.0004 (1/2773) 0 * * Os_TE_631888 Chr12 23434696 23434695 + RIRE2_LTR 11306 0.0347 (95/2734) 0 * * Os_TE_631886 Chr12 23434354 23434355 - CASINE 174 0.0507 (150/2959) 0 * Os_TE_631885 Os_TE_631885 Chr12 23434350 23434349 + OsSN3 183 0.0496 (147/2961) 0 * Os_TE_631886 Os_TE_631875 Chr12 23432232 23432233 + ORSgTEMT00600036 364 0.0341 (98/2877) 0 * Os_TE_631874 Os_TE_631874 Chr12 23432227 23432226 - ORSgTEMT00600085 364 0.0543 (159/2929) 0 * Os_TE_631875 Os_TE_631868 Chr12 23430460 23430461 + COPIA2-LTR_OS 6433 0.0004 (1/2846) 0 * Os_TE_631867 Os_TE_631867 Chr12 23430456 23430455 - COPIA2-LTR_OS 6433 0.0004 (1/2853) 0 * Os_TE_631868 Os_TE_631865 Chr12 23430040 23430041 + RETRO2_LTR 12874 0.1100 (309/2810) 0 * Os_TE_631864 Os_TE_631864 Chr12 23430036 23430035 - RETRO2_LTR 12874 0.1150 (329/2862) 0 * Os_TE_631865 Os_TE_631862 Chr12 23429078 23429077 - OsSN3 183 0.0503 (149/2960) 0 * * Os_TE_631856 Chr12 23427569 23427570 - MPING 430 0.0004 (1/2523) 0 * * Os_TE_631848 Chr12 23427196 23427197 + MPING 430 0.0007 (2/2754) 0 * Os_TE_631847 Os_TE_631847 Chr12 23427194 23427193 - MPING 430 0.0007 (2/2743) 0 * Os_TE_631848 Os_TE_631845 Chr12 23426789 23426788 - INDITTO 263 0.0621 (169/2721) 0 * * Os_TE_631844 Chr12 23426363 23426364 + SPMLIKE 10989 0.0251 (64/2545) 0 * * Os_TE_631838 Chr12 23425402 23425403 - INDITTO 263 0.0007 (2/2950) 0 * * Os_TE_631832 Chr12 23424185 23424186 + RIRE5-LTR_OS 6427 0.0007 (2/2978) 0 * Os_TE_631831 Os_TE_631831 Chr12 23424178 23424177 - RIRE5-LTR_OS 6427 0.0007 (2/2979) 0 * Os_TE_631832 Os_TE_631819 Chr12 23422205 23422206 - RIREX_LTR 8828 0.0003 (1/2977) 0 * * Os_TE_631805 Chr12 23420969 23420970 - STOLAB 312 0.0550 (156/2835) 0 * * Os_TE_631794 Chr12 23416961 23417223 + ORSgTETNOOT00221 261 0.5221 (982/1881) 1 Intact * Os_TE_631792 Chr12 23416795 23416534 - ORSgTEMT00101174 225 0.6412 (1757/2740) 1 Intact Os_TE_631789 Os_TE_631789 Chr12 23416536 23416793 - STOWAWAY10_OS 259 0.6166 (1615/2619) 1 Intact Os_TE_631792 Os_TE_631787 Chr12 23416016 23416017 - STOWAWAY51_OS 246 0.3678 (1049/2852) 0 * * Os_TE_631786 Chr12 23415806 23415807 - COPIA2-LTR_OS 6433 0.0027 (8/2946) 0 * Os_TE_631785 Os_TE_631785 Chr12 23415802 23415801 + COPIA2-LTR_OS 6433 0.0027 (8/2954) 0 * Os_TE_631786 Os_TE_631784 Chr12 23415523 23415524 - CRM-LTR_OS 7749 0.0004 (1/2385) 0 * * Os_TE_631773 Chr12 23411073 23411074 - RIREX_LTR 8828 0.0391 (115/2944) 0 * * Os_TE_631756 Chr12 23398405 23398404 + COPIA2-LTR_OS 6433 0.0004 (1/2393) 0 * * Os_TE_631755 Chr12 23398321 23398322 - COPIA2-LTR_OS 6433 0.0010 (3/2918) 0 * Os_TE_631754 Os_TE_631754 Chr12 23398317 23398316 + COPIA2-LTR_OS 6433 0.0003 (1/2953) 0 * Os_TE_631755 Os_TE_631749 Chr12 23396824 23396825 - NDNA1TNA_OS 334 0.0128 (38/2978) 0 * Os_TE_631748 Os_TE_631748 Chr12 23396823 23396822 + NDNA1TNA_OS 334 0.0131 (39/2985) 0 * Os_TE_631749 Os_TE_631747 Chr12 23396088 23396089 - RETRO2_LTR 12874 0.1014 (159/1568) 0 * Os_TE_631746 Os_TE_631746 Chr12 23396084 23396083 + RETRO2_LTR 12874 0.1063 (167/1571) 0 * Os_TE_631747 Os_TE_631745 Chr12 23396082 23396083 + SZ-67LTR 1540 0.0028 (8/2864) 0 * * Os_TE_631737 Chr12 23393009 23393152 + ORSgTEMT01701101 133 0.5273 (1565/2968) 1 Intact * Os_TE_631721 Chr12 23387372 23386635 + BAJIELTR 4500 0.4919 (1454/2956) 1 Solo_LTR * Os_TE_631708 Chr12 23381447 23381448 + RIRE2_LTR 11306 0.0003 (1/2995) 0 * Os_TE_631707 Os_TE_631707 Chr12 23381444 23381443 - RIRE2_LTR 11306 0.0003 (1/2986) 0 * Os_TE_631708 Os_TE_631697 Chr12 23376435 23359627 + RETROSAT4_LTR 13504 0.7131 (1414/1983) 1 Intact Os_TE_631690 Os_TE_631690 Chr12 23359627 23376435 - SZ-35LTR 3853 0.7111 (1415/1990) 1 Intact Os_TE_631697 Os_TE_631669 Chr12 23346227 23346226 - TRUNCATOR2_LTR 2904 0.0003 (1/2980) 0 * * Os_TE_631665 Chr12 23345374 23345375 - ENSPM6_OS 9815 0.0003 (1/2928) 0 * Os_TE_631664 Os_TE_631664 Chr12 23345372 23345371 + ENSPM6_OS 9815 0.0003 (1/2910) 0 * Os_TE_631665 Os_TE_631660 Chr12 23343121 23343122 + ORSgTEMT01701324 144 0.0003 (1/2966) 0 * * Os_TE_631655 Chr12 23342695 23342696 + ORSgTEMT01602181 239 0.0003 (1/2938) 0 * * Os_TE_631654 Chr12 23342265 23342264 - ORSgTEMT02400179 221 0.0020 (6/2950) 0 * * Os_TE_631646 Chr12 23341645 23341644 + ORSiTERT00200154 9386 0.0004 (1/2498) 0 * * Os_TE_631644 Chr12 23341267 23341266 - AMYLTP 383 0.0528 (155/2937) 0 * * Os_TE_631643 Chr12 23340737 23340738 + TOS17LTR 138 0.0010 (3/2986) 0 * Os_TE_631642 Os_TE_631642 Chr12 23340733 23340732 - TOS17LTR 138 0.0010 (3/2983) 0 * Os_TE_631643 Os_TE_631632 Chr12 23336800 23336799 + ORSgTETNOOT00908 242 0.0180 (53/2946) 0 * * Os_TE_631607 Chr12 23333455 23333456 - RETROSAT2LTR 12796 0.0003 (1/2940) 0 * * Os_TE_631584 Chr12 23325381 23325380 - STOWAWAY51_OS 246 0.0003 (1/2986) 0 * Os_TE_631583 Os_TE_631583 Chr12 23325378 23325379 - STOWAWAY51_OS 246 0.0003 (1/2988) 0 * Os_TE_631584 Os_TE_631569 Chr12 23317769 23317768 + MPING 430 0.0024 (7/2918) 0 * * Os_TE_631562 Chr12 23316876 23316877 + COPIA2-LTR_OS 6433 0.0007 (2/2985) 0 * Os_TE_631561 Os_TE_631561 Chr12 23316872 23316871 - COPIA2-LTR_OS 6433 0.0007 (2/2980) 0 * Os_TE_631562 Os_TE_631560 Chr12 23316260 23316261 - AMYLTP 383 0.0118 (35/2978) 0 * Os_TE_631559 Os_TE_631559 Chr12 23316252 23316251 + AMYLTP 383 0.0124 (37/2977) 0 * Os_TE_631560 Os_TE_631554 Chr12 23314475 23314476 - RETRO2_LTR 12874 0.0063 (19/2993) 0 * Os_TE_631553 Os_TE_631553 Chr12 23314471 23314470 + SZLTR 1249 0.0067 (20/2987) 0 * Os_TE_631554 Os_TE_631542 Chr12 23312676 23312675 - STOWAWAY44_OS 240 0.0010 (3/2982) 0 * Os_TE_631541 Os_TE_631541 Chr12 23312673 23312674 + STOWAWAY44_OS 240 0.0010 (3/2978) 0 * Os_TE_631542 Os_TE_631514 Chr12 23300348 23300349 + AMYLTP 383 0.0171 (35/2048) 0 * Os_TE_631513 Os_TE_631513 Chr12 23300340 23300339 - AMYLTP 383 0.0115 (32/2778) 0 * Os_TE_631514 Os_TE_631508 Chr12 23299659 23299660 - STOWAWAY51_OS 246 0.0059 (10/1697) 0 * * Os_TE_631504 Chr12 23294930 23294931 - NDNA1TNA_OS 334 0.0047 (14/2996) 0 * * Os_TE_631494 Chr12 23289940 23289939 - SC-8_LTR 4951 0.0003 (1/2989) 0 * * Os_TE_631490 Chr12 23284764 23284765 + ORSiTERTOOT00296 5553 0.0003 (1/2994) 0 * Os_TE_631489 Os_TE_631489 Chr12 23284760 23284759 - SC-3_LTR 5748 0.0003 (1/2994) 0 * Os_TE_631490 Os_TE_631478 Chr12 23282840 23282841 + NDNA1TNA_OS 334 0.0318 (95/2990) 0 * Os_TE_631477 Os_TE_631477 Chr12 23282838 23282837 - NDNA1TNA_OS 334 0.0304 (91/2994) 0 * Os_TE_631478 Os_TE_631474 Chr12 23279945 23279946 + TNR2A 152 0.0058 (17/2922) 0 * Os_TE_631473 Os_TE_631473 Chr12 23279931 23279930 - TNR2A 152 0.0314 (94/2990) 0 * Os_TE_631474 Os_TE_631472 Chr12 23279801 23279802 - LIER 339 0.0022 (6/2754) 0 * * Os_TE_631458 Chr12 23273448 23273447 + MPING 430 0.0350 (103/2942) 0 * * Os_TE_631440 Chr12 23263441 23263440 - RETRO2_LTR 12874 0.0049 (13/2657) 0 * * Os_TE_631435 Chr12 23262623 23262622 - HELITRON2_OS 15167 0.0007 (2/2890) 0 * * Os_TE_631419 Chr12 23258681 23258682 + MuDR2_OS 6770 0.0010 (3/2966) 0 * Os_TE_631418 Os_TE_631418 Chr12 23258672 23258671 - MuDR2_OS 6770 0.0007 (2/2966) 0 * Os_TE_631419 Os_TE_631395 Chr12 23246378 23246377 + ORSgTEMT01601591 242 0.0034 (10/2984) 0 * Os_TE_631394 Os_TE_631394 Chr12 23246369 23246370 + STOWAWAY51_OS 246 0.0030 (9/2986) 0 * Os_TE_631395 Os_TE_631389 Chr12 23245184 23245183 - MUDRN1_OS 764 0.0003 (1/2970) 0 * * Os_TE_631388 Chr12 23245024 23245025 + RIRE2_LTR 11306 0.0384 (114/2969) 0 * Os_TE_631387 Os_TE_631387 Chr12 23245020 23245019 - RIRE2_LTR 11306 0.0388 (115/2963) 0 * Os_TE_631388 Os_TE_631385 Chr12 23242884 23242885 + OSR3_LTR 5201 0.0003 (1/2948) 0 * Os_TE_631384 Os_TE_631384 Chr12 23242880 23242879 - OSR3_LTR 5201 0.0003 (1/2948) 0 * Os_TE_631385 Os_TE_631375 Chr12 23241776 23241777 + COPIA2-LTR_OS 6433 0.0003 (1/2970) 0 * Os_TE_631374 Os_TE_631374 Chr12 23241772 23241771 - COPIA2-LTR_OS 6433 0.0003 (1/2969) 0 * Os_TE_631375 Os_TE_631372 Chr12 23240428 23240427 + SINE1OS 127 0.0527 (157/2980) 0 * * Os_TE_631369 Chr12 23237280 23237279 + OSR3_LTR 5201 0.0003 (1/2886) 0 * * Os_TE_631349 Chr12 23228471 23228472 + RIREX_LTR 8828 0.0035 (9/2575) 0 * Os_TE_631348 Os_TE_631348 Chr12 23228467 23228466 - RIREX_LTR 8828 0.0035 (9/2572) 0 * Os_TE_631349 Os_TE_631325 Chr12 23211671 23211672 - RETROSAT2LTRA 3112 0.0007 (2/2828) 0 * Os_TE_631324 Os_TE_631324 Chr12 23211667 23211666 - RETROSAT2LTRA 3112 0.0007 (2/2822) 0 * Os_TE_631325 Os_TE_631317 Chr12 23209365 23209366 - SZ-44LTR 1408 0.1521 (456/2998) 0 * Os_TE_631316 Os_TE_631316 Chr12 23209361 23209360 + SZ-44LTR 1408 0.1114 (321/2882) 0 * Os_TE_631317 Os_TE_631312 Chr12 23208427 23208428 + ORSgTEMT00101341 314 0.0248 (74/2986) 0 * * Os_TE_631304 Chr12 23204737 23206418 + MERMITE18B 1306 0.8572 (2551/2976) 1 Intact * Os_TE_631299 Chr12 23203581 23203580 + NDNA2TNA_OS 346 0.0270 (79/2927) 0 * * Os_TE_631297 Chr12 23203334 23203333 - F770 284 0.1466 (435/2967) 0 * * Os_TE_631288 Chr12 23202440 23202439 - TRUNCATOR 2918 0.0004 (1/2847) 0 * * Os_TE_631287 Chr12 23201682 23201681 - ORSgTEMT01601432 239 0.0030 (9/2969) 0 * Os_TE_631286 Os_TE_631286 Chr12 23201679 23201680 + ORSgTEMT01602181 239 0.0030 (9/2962) 0 * Os_TE_631287 Os_TE_631275 Chr12 23191353 23191352 + SEVERIN-2 1952 0.0021 (6/2886) 0 * * Os_TE_631274 Chr12 23191298 23191060 - ORSgTEMT01600578 239 0.8112 (2337/2881) 1 Intact Os_TE_631273 Os_TE_631273 Chr12 23191060 23191298 - ORSgTEMT01600768 234 0.8143 (2373/2914) 1 Intact Os_TE_631274 Os_TE_631272 Chr12 23190994 23190993 + ORSgTERT00201441 428 0.0014 (4/2889) 0 * * Os_TE_631243 Chr12 23184488 23184487 - SC-3_LTR 5748 0.0020 (6/2941) 0 * * Os_TE_631239 Chr12 23182577 23182578 - MDR2 6967 0.0035 (10/2896) 0 * Os_TE_631238 Os_TE_631238 Chr12 23182569 23182568 + MDR2 6967 0.0038 (11/2898) 0 * Os_TE_631239 Os_TE_631223 Chr12 23179258 23180329 + RETRO2A_LTR 12895 0.8134 (2375/2920) 1 Solo_LTR * Os_TE_631217 Chr12 23177941 23177942 - MuDR4_OS 7610 0.0034 (10/2984) 0 * * Os_TE_631215 Chr12 23177651 23177650 + WUWU 113 0.0033 (10/2990) 0 * * Os_TE_631213 Chr12 23177059 23177060 - CLOUD 734 0.0101 (30/2968) 0 * Os_TE_631212 Os_TE_631212 Chr12 23177051 23177050 - CLOUD 734 0.0200 (60/2994) 0 * Os_TE_631213 Os_TE_631209 Chr12 23176782 23176781 - ORSiTERTOOT00295 975 0.0027 (8/2926) 0 * * Os_TE_631205 Chr12 23176123 23176124 + NDNA1TNA_OS 334 0.0185 (51/2754) 0 * Os_TE_631204 Os_TE_631204 Chr12 23176121 23176120 - NDNA1TNA_OS 334 0.0179 (50/2795) 0 * Os_TE_631205 Os_TE_631180 Chr12 23166447 23166446 + ORSgTEMT00901844 250 0.0477 (134/2811) 0 * Os_TE_631179 Os_TE_631179 Chr12 23166440 23166441 - ORSgTEMT00900099 250 0.0482 (136/2821) 0 * Os_TE_631180 Os_TE_631171 Chr12 23159744 23159745 + ORSiTERTOOT00296 5553 0.0007 (2/2990) 0 * Os_TE_631170 Os_TE_631170 Chr12 23159740 23159739 - SC-3_LTR 5748 0.0007 (2/2993) 0 * Os_TE_631171 Os_TE_631155 Chr12 23147673 23147674 + OLO24 345 0.0045 (12/2639) 0 * * Os_TE_631153 Chr12 23147636 23147637 - RETROSAT2LTR 12796 0.0027 (7/2594) 0 * * Os_TE_631150 Chr12 23145180 23145181 + STOWAWAY11_OS 292 0.0261 (77/2950) 0 * * Os_TE_631143 Chr12 23143228 23143229 + ORSgTEMT01602181 239 0.0262 (77/2936) 0 * * Os_TE_631127 Chr12 23133399 23133398 + ORSgTEMT00100291 345 0.0007 (2/2942) 0 * * Os_TE_631122 Chr12 23129753 23129752 + COPI1_LTR 4721 0.3259 (959/2943) 0 * * Os_TE_631121 Chr12 23129746 23129747 - SZ-25LTR 330 0.1141 (263/2305) 0 * Os_TE_631120 Os_TE_631120 Chr12 23129743 23129742 + ORSiTERT00100071 4657 0.0019 (4/2059) 0 * Os_TE_631121 Os_TE_631111 Chr12 23126453 23126454 - INDITTO 263 0.0457 (136/2973) 0 * Os_TE_631110 Os_TE_631110 Chr12 23126451 23126450 + INDITTO 263 0.0432 (127/2937) 0 * Os_TE_631111 Os_TE_631108 Chr12 23126352 23126353 + AMYLTP 383 0.2096 (604/2882) 0 * * Os_TE_631105 Chr12 23125941 23125696 + STOWAWAY51_OS 246 0.6772 (1926/2844) 1 Intact * Os_TE_631099 Chr12 23124813 23122846 - MERMITE18B 1306 0.6813 (2007/2946) 1 Intact Os_TE_631094 Os_TE_631094 Chr12 23122836 23124813 + MERMITE18B 1306 0.6730 (1856/2758) 1 Intact Os_TE_631099 Os_TE_631093 Chr12 23122821 23122822 - MuDR3_OS 8604 0.0364 (100/2746) 0 * Os_TE_631092 Os_TE_631092 Chr12 23122814 23122813 + MuDR3_OS 8604 0.0166 (37/2233) 0 * Os_TE_631093 Os_TE_631082 Chr12 23118540 23118541 + RETRO2A_LTR 12895 0.0035 (10/2857) 0 * Os_TE_631081 Os_TE_631081 Chr12 23118536 23118535 - RETRO1_LTR 8314 0.0036 (10/2776) 0 * Os_TE_631082 Os_TE_631079 Chr12 23118429 23118428 + DS-RICE3N 525 0.0003 (1/2922) 0 * * Os_TE_631055 Chr12 23112865 23112864 + CACTA-I 1124 0.0003 (1/2940) 0 * * Os_TE_631052 Chr12 23112682 23112683 - RIRE5-LTR_OS 6427 0.0529 (158/2986) 0 * Os_TE_631051 Os_TE_631051 Chr12 23112675 23112674 + RIRE5-LTR_OS 6427 0.0496 (148/2983) 0 * Os_TE_631052 Os_TE_631023 Chr12 23096197 23096196 + RIRE2_LTR 11306 0.0010 (3/2989) 0 * * Os_TE_631021 Chr12 23095385 23095384 + ORSgTEMT01400003 213 0.0508 (152/2990) 0 * Os_TE_631020 Os_TE_631020 Chr12 23095384 23095385 + STOWAWAY9_OS 235 0.0004 (1/2848) 0 * Os_TE_631021 Os_TE_630994 Chr12 23089377 23089376 - ORSgTEMT01701254 154 0.0521 (154/2956) 0 * * Os_TE_630993 Chr12 23089039 23089038 + STOWAWAY1_OS 149 0.0323 (93/2882) 0 * * Os_TE_630983 Chr12 23087825 23087826 + RIREX_LTR 8828 0.0007 (2/2856) 0 * Os_TE_630982 Os_TE_630982 Chr12 23087821 23087820 - RIREX_LTR 8828 0.0007 (2/2989) 0 * Os_TE_630983 Os_TE_630979 Chr12 23087213 23087212 + ORSgTEMT00500476 150 0.0497 (149/2996) 0 * Os_TE_630978 Os_TE_630978 Chr12 23087212 23087213 - ORSgTEMT00501979 148 0.0504 (151/2997) 0 * Os_TE_630979 Os_TE_630977 Chr12 23086597 23086598 + RIRE2_LTR 11306 0.0027 (8/2987) 0 * Os_TE_630976 Os_TE_630976 Chr12 23086593 23086592 - RIRE2_LTR 11306 0.0027 (8/2980) 0 * Os_TE_630977 Os_TE_630962 Chr12 23084789 23084790 - STOWAWAY21_OS 243 0.0003 (1/2998) 0 * * Os_TE_630956 Chr12 23079612 23079613 - XIKE 594 0.0375 (96/2557) 0 * * Os_TE_630952 Chr12 23079146 23079145 - RETRO2_LTR 12874 0.0004 (1/2851) 0 * * Os_TE_630941 Chr12 23077751 23077752 + RETROSAT4_LTR 13504 0.0520 (152/2921) 0 * Os_TE_630940 Os_TE_630940 Chr12 23077747 23077746 - SZ-35LTR 3853 0.0569 (167/2933) 0 * Os_TE_630941 Os_TE_630936 Chr12 23070973 23070974 + ORSgTEMT01701016 130 0.0523 (153/2925) 0 * * Os_TE_630909 Chr12 23060399 23060398 - MPING 430 0.0003 (1/2935) 0 * * Os_TE_630896 Chr12 23055582 23055583 - SC-3_LTR 5748 0.0013 (4/2998) 0 * Os_TE_630895 Os_TE_630895 Chr12 23055578 23055577 + ORSiTERTOOT00296 5553 0.0010 (3/2996) 0 * Os_TE_630896 Os_TE_630808 Chr12 23016509 23016510 - COPIA2-LTR_OS 6433 0.0003 (1/2967) 0 * * Os_TE_630796 Chr12 23014053 23014054 - GYPSY-A_LTR 8951 0.0003 (1/2999) 0 * Os_TE_630795 Os_TE_630795 Chr12 23014049 23014048 + GYPSY-A_LTR 8951 0.0003 (1/2999) 0 * Os_TE_630796 Os_TE_630793 Chr12 23014012 23014011 - COPIA2-LTR_OS 6433 0.0027 (8/2999) 0 * * Os_TE_630784 Chr12 23009563 23009562 + COPIA2-LTR_OS 6433 0.0007 (2/2999) 0 * * Os_TE_630782 Chr12 23009145 23009146 + SEVERIN-2 1952 0.0250 (75/2996) 0 * * Os_TE_630767 Chr12 23001593 23001594 - SZ-67LTR 1540 0.0044 (13/2987) 0 * Os_TE_630766 Os_TE_630766 Chr12 23001589 23001588 + SZ-67LTR 1540 0.0040 (12/2986) 0 * Os_TE_630767 Os_TE_630752 Chr12 22978414 22978413 - TYPEM 227 0.0033 (9/2763) 0 * * Os_TE_630744 Chr12 22976778 22976779 - RETRO1_LTR 8314 0.0010 (3/2867) 0 * Os_TE_630743 Os_TE_630743 Chr12 22976774 22976773 + RETRO2A_LTR 12895 0.0011 (3/2854) 0 * Os_TE_630744 Os_TE_630735 Chr12 22969300 22969301 + ORSgTETNOOT01834 251 0.0084 (25/2991) 0 * Os_TE_630734 Os_TE_630734 Chr12 22969298 22969297 + ORSgTETNOOT01834 251 0.0070 (21/2986) 0 * Os_TE_630735 Os_TE_630731 Chr12 22966317 22966318 - RIREX_LTR 8828 0.0003 (1/2990) 0 * Os_TE_630730 Os_TE_630730 Chr12 22966313 22966312 + RIREX_LTR 8828 0.0003 (1/2991) 0 * Os_TE_630731 Os_TE_630727 Chr12 22965871 22965870 - COPIA2-LTR_OS 6433 0.0003 (1/2971) 0 * * Os_TE_630724 Chr12 22965270 22965271 - OSTE20 496 0.0024 (7/2960) 0 * Os_TE_630723 Os_TE_630723 Chr12 22965266 22965265 - OSTE20 496 0.0024 (7/2961) 0 * Os_TE_630724 Os_TE_630721 Chr12 22964824 22964825 - OLO24 345 0.0268 (80/2987) 0 * Os_TE_630720 Os_TE_630720 Chr12 22964822 22964821 + OLO24 345 0.0264 (79/2990) 0 * Os_TE_630721 Os_TE_630695 Chr12 22951078 22951079 - ORSiTETNOOT00200 3563 0.1868 (508/2719) 0 * Os_TE_630694 Os_TE_630694 Chr12 22951071 22951070 + TWIFBIG 3567 0.1667 (443/2657) 0 * Os_TE_630695 Os_TE_630684 Chr12 22948290 22948289 + ORSgTETNOOT00908 242 0.0030 (9/2988) 0 * * Os_TE_630672 Chr12 22944908 22944909 - ORSgTEMT01602170 250 0.0004 (1/2552) 0 * * Os_TE_630654 Chr12 22940473 22940474 + AMYLTP 383 0.0010 (3/2997) 0 * Os_TE_630653 Os_TE_630653 Chr12 22940465 22940464 - AMYLTP 383 0.0010 (3/2997) 0 * Os_TE_630654 Os_TE_630633 Chr12 22921840 22921841 + SZLTR 1249 0.0279 (80/2865) 0 * Os_TE_630632 Os_TE_630632 Chr12 22921836 22921835 - RETRO2_LTR 12874 0.0249 (70/2815) 0 * Os_TE_630633 Os_TE_630631 Chr12 22921631 22921632 + SZ-40LTR 2465 0.0034 (10/2949) 0 * * Os_TE_630610 Chr12 22918623 22918624 + RIRE2_LTR 11306 0.0007 (2/2709) 0 * Os_TE_630609 Os_TE_630609 Chr12 22918619 22918618 - RIRE2_LTR 11306 0.0007 (2/2694) 0 * Os_TE_630610 Os_TE_630571 Chr12 22903695 22903696 - SZ-35LTR 3853 0.0269 (80/2974) 0 * * Os_TE_630544 Chr12 22887368 22887369 + SPMLIKE 10989 0.0041 (12/2962) 0 * * Os_TE_630540 Chr12 22885294 22884984 + STOWAWAY12_OS 312 0.4942 (1459/2952) 1 Intact Os_TE_630539 Os_TE_630539 Chr12 22884982 22885289 + ORSgTEMT02900076 336 0.4912 (1451/2954) 1 Intact Os_TE_630540 Os_TE_630532 Chr12 22882759 22882760 - CACTA-H 1152 0.0034 (10/2975) 0 * Os_TE_630531 Os_TE_630531 Chr12 22882757 22882756 + CACTA-H 1152 0.0030 (9/2980) 0 * Os_TE_630532 Os_TE_630529 Chr12 22880125 22880126 - EnSpm-13_OS 11171 0.0004 (1/2242) 0 * Os_TE_630528 Os_TE_630528 Chr12 22880123 22880122 + EnSpm-13_OS 11171 0.0004 (1/2239) 0 * Os_TE_630529 Os_TE_630525 Chr12 22878780 22878198 + ORSiTERTOOT00269 10834 0.7834 (2336/2982) 1 Intact * Os_TE_630518 Chr12 22877786 22877787 - ORSgTERT00201216 11284 0.0033 (10/2999) 0 * * Os_TE_630512 Chr12 22876364 22876363 - ORSgTEMT00900741 219 0.0299 (89/2974) 0 * Os_TE_630511 Os_TE_630511 Chr12 22876360 22876361 + ORSgTEMT00901844 250 0.0361 (92/2545) 0 * Os_TE_630512 Os_TE_630510 Chr12 22876279 22876278 + ORSgTEMT00901844 250 0.0393 (93/2366) 0 * * Os_TE_630506 Chr12 22873614 22873613 - ORSgTEMT01602413 239 0.0342 (77/2252) 0 * Os_TE_630505 Os_TE_630505 Chr12 22873613 22873614 - ORSgTEMT01602317 236 0.0352 (79/2242) 0 * Os_TE_630506 Os_TE_630504 Chr12 22872522 22872523 - RIRE2_LTR 11306 0.0027 (8/2986) 0 * * Os_TE_630500 Chr12 22870763 22872271 + MERMITEB 1610 0.7848 (2261/2881) 1 Intact * Os_TE_630486 Chr12 22866728 22866729 + CRATA 4786 0.0014 (4/2908) 0 * Os_TE_630485 Os_TE_630485 Chr12 22866721 22866720 - CRATA 4786 0.0017 (5/2950) 0 * Os_TE_630486 Os_TE_630478 Chr12 22864483 22864484 - ORSgTEMT01601432 239 0.0044 (13/2924) 0 * * Os_TE_630473 Chr12 22863817 22863595 + TNR1 237 0.7460 (1959/2626) 1 Intact * Os_TE_630468 Chr12 22863253 22863252 + ORSiTERTOOT00034 791 0.0005 (1/2214) 0 * * Os_TE_630465 Chr12 22862816 22862815 + RETROSAT4_LTR 13504 0.0009 (2/2208) 0 * * Os_TE_630462 Chr12 22861105 22861104 + TRUNCATOR 2918 0.0057 (13/2280) 0 * Os_TE_630461 Os_TE_630461 Chr12 22861104 22861105 - TRUNCATOR 2918 0.0053 (12/2275) 0 * Os_TE_630462 Os_TE_630460 Chr12 22860218 22860219 + SPMLIKE 10989 0.0042 (12/2866) 0 * Os_TE_630459 Os_TE_630459 Chr12 22860216 22860215 - ORSgTETN00200001 10994 0.0037 (11/2976) 0 * Os_TE_630460 Os_TE_630458 Chr12 22859880 22859881 + SPMLIKE 10989 0.0325 (97/2984) 0 * Os_TE_630457 Os_TE_630457 Chr12 22859878 22859877 - ORSgTETN00200001 10994 0.0335 (100/2988) 0 * Os_TE_630458 Os_TE_630456 Chr12 22859619 22859620 + TYPEU2 382 0.2556 (720/2817) 0 * Os_TE_630455 Os_TE_630455 Chr12 22859612 22859611 + TYPEU2 382 0.0004 (1/2234) 0 * Os_TE_630456 Os_TE_630453 Chr12 22859418 22859183 - ORSgTEMT01601208 238 0.7384 (1888/2557) 1 Intact * Os_TE_630449 Chr12 22859039 22859038 - ENSPM4_OS 11610 0.0022 (6/2742) 0 * * Os_TE_630447 Chr12 22858677 22858391 + ORSgTEMT05200196 285 0.6475 (1793/2769) 1 Intact * Os_TE_630440 Chr12 22858087 22858088 - ORSgTETN00200001 10994 0.0010 (2/1909) 0 * Os_TE_630439 Os_TE_630439 Chr12 22858085 22858084 + SPMLIKE 10989 0.0011 (3/2729) 0 * Os_TE_630440 Os_TE_630426 Chr12 22846544 22835055 - ORSgTETN00200001 10994 0.6319 (1327/2100) 1 Intact Os_TE_630417 Os_TE_630417 Chr12 22835055 22846544 + SPMLIKE 10989 0.6465 (1397/2161) 1 Intact Os_TE_630426 Os_TE_630416 Chr12 22835011 22835012 - MuDR3_OS 8604 0.0056 (12/2143) 0 * Os_TE_630415 Os_TE_630415 Chr12 22835003 22835002 - MuDR3_OS 8604 0.0044 (9/2037) 0 * Os_TE_630416 Os_TE_630399 Chr12 22825546 22825421 + ORSgTEMT00500611 145 0.7460 (2144/2874) 1 Intact Os_TE_630398 Os_TE_630398 Chr12 22825417 22825540 - ORSgTEMT00501384 148 0.7433 (2149/2891) 1 Intact Os_TE_630399 Os_TE_630393 Chr12 22824419 22824635 + ORSgTEMT02400014 229 0.7620 (2136/2803) 1 Intact * Os_TE_630391 Chr12 22824054 22824053 + SPMLIKE 10989 0.0014 (4/2857) 0 * Os_TE_630390 Os_TE_630390 Chr12 22824052 22824053 - ORSgTETN00200001 10994 0.0014 (4/2850) 0 * Os_TE_630391 Os_TE_630388 Chr12 22823708 22823709 - ORSgTETN00200001 10994 0.2802 (599/2138) 0 * Os_TE_630387 Os_TE_630387 Chr12 22823706 22823705 + SPMLIKE 10989 0.2919 (632/2165) 0 * Os_TE_630388 Os_TE_630386 Chr12 22823659 22823522 + ORSgTEMT01701983 154 0.7657 (2085/2723) 1 Intact Os_TE_630385 Os_TE_630385 Chr12 22823518 22823658 + ORSgTEMT01701115 144 0.7385 (2143/2902) 1 Intact Os_TE_630386 Os_TE_630375 Chr12 22820816 22820817 - RIRE2_LTR 11306 0.0010 (3/2877) 0 * Os_TE_630374 Os_TE_630374 Chr12 22820812 22820811 - ORSgTERT00201216 11284 0.0014 (3/2143) 0 * Os_TE_630375 Os_TE_630372 Chr12 22819787 22819788 + MPING 430 0.0019 (4/2144) 0 * Os_TE_630371 Os_TE_630371 Chr12 22819785 22819784 - MPING 430 0.0014 (3/2138) 0 * Os_TE_630372 Os_TE_630370 Chr12 22817918 22817917 + ENSPM4_OS 11610 0.0019 (4/2156) 0 * Os_TE_630369 Os_TE_630369 Chr12 22817888 22817889 - ENSPM4_OS 11610 0.0019 (4/2157) 0 * Os_TE_630370 Os_TE_630357 Chr12 22812508 22812507 + ORSgTEMT01601639 236 0.0014 (3/2157) 0 * Os_TE_630356 Os_TE_630356 Chr12 22812505 22812506 + ORSgTEMT01602181 239 0.0019 (4/2158) 0 * Os_TE_630357 Os_TE_630354 Chr12 22811498 22811499 - ORSgTEMT00900099 250 0.0474 (108/2277) 0 * * Os_TE_630353 Chr12 22811129 22811128 - ORSgTETN00200001 10994 0.0024 (4/1684) 0 * * Os_TE_630350 Chr12 22810483 22810484 - ORSgTEMT01602413 239 0.0019 (5/2639) 0 * * Os_TE_630346 Chr12 22800077 22810255 + ENSPM5_OS 9581 0.6754 (1440/2132) 1 Intact * Os_TE_630344 Chr12 22800020 22800019 + SPMLIKE 10989 0.0014 (3/2131) 0 * * Os_TE_630341 Chr12 22799696 22799695 + ORSgTETNOOT01642 241 0.0176 (45/2550) 0 * * Os_TE_630332 Chr12 22799235 22799236 + SPMLIKE 10989 0.0009 (2/2128) 0 * * Os_TE_630329 Chr12 22798940 22798941 - ORSgTEMT01600639 228 0.0225 (6/267) -1 * * Os_TE_630328 Chr12 22798823 22798824 - SPMLIKE 10989 0.0017 (3/1814) -1 * * Os_TE_630324 Chr12 22797083 22797084 - ORSgTETN00200001 10994 0.0018 (4/2278) 0 * Os_TE_630323 Os_TE_630323 Chr12 22797081 22797080 + SPMLIKE 10989 0.0018 (4/2269) 0 * Os_TE_630324 Os_TE_630321 Chr12 22796670 22796671 - HARB-1_OS 5166 0.0022 (5/2269) 0 * Os_TE_630320 Os_TE_630320 Chr12 22796668 22796667 + HARB-1_OS 5166 0.0030 (5/1669) 0 * Os_TE_630321 Os_TE_630304 Chr12 22792674 22792675 + RETROSAT4_LTR 13504 0.0031 (5/1636) 0 * Os_TE_630303 Os_TE_630303 Chr12 22792670 22792669 - SZ-35LTR 3853 0.0036 (6/1644) 0 * Os_TE_630304 Os_TE_630301 Chr12 22792337 22792338 + COPIA2-LTR_OS 6433 0.0048 (8/1683) 0 * Os_TE_630300 Os_TE_630300 Chr12 22792333 22792332 - COPIA2-LTR_OS 6433 0.0053 (9/1685) 0 * Os_TE_630301 Os_TE_630292 Chr12 22788922 22788923 + SEVERIN-2 1952 0.0234 (40/1707) 0 * * Os_TE_630271 Chr12 22778836 22778835 + OSMU5 4881 0.0070 (12/1721) 0 * * Os_TE_630268 Chr12 22776581 22776582 + ORSgTEMT04800085 366 0.0036 (6/1673) 0 * * Os_TE_630267 Chr12 22776579 22776578 - INDITTO 263 0.0024 (4/1698) 0 * * Os_TE_630261 Chr12 22774872 22774871 + STOWAWAY50_OS 174 0.0006 (1/1725) 0 * * Os_TE_630256 Chr12 22772878 22772879 + TRUNCATOR2_LTR 2904 0.0009 (2/2306) 0 * * Os_TE_630253 Chr12 22771702 22771703 + TWIF 586 0.0004 (1/2308) 0 * Os_TE_630252 Os_TE_630252 Chr12 22771695 22771694 - ORSiTETNOOT00199 3501 0.0004 (1/2309) 0 * Os_TE_630253 Os_TE_630251 Chr12 22771381 22771382 - OSMAR1 5265 0.2177 (619/2844) 0 * * Os_TE_630239 Chr12 22769005 22769006 - STOWAWAY51_OS 246 0.0686 (159/2317) 0 * * Os_TE_630220 Chr12 22757793 22757792 - ORSiTETNOOT00107 906 0.1179 (321/2722) 0 * Os_TE_630219 Os_TE_630219 Chr12 22757789 22757790 + ORSiTETNOOT00107 906 0.1400 (326/2328) 0 * Os_TE_630220 Os_TE_630216 Chr12 22754556 22754555 - TRUNCATOR 2918 0.0168 (39/2325) 0 * Os_TE_630215 Os_TE_630215 Chr12 22754555 22754556 + TRUNCATOR 2918 0.0172 (40/2320) 0 * Os_TE_630216 Os_TE_630203 Chr12 22751112 22751111 + COPIA2-LTR_OS 6433 0.0003 (1/2913) 0 * * Os_TE_630186 Chr12 22742323 22742322 + ORSgTEMT01601591 242 0.0018 (5/2849) 0 * Os_TE_630185 Os_TE_630185 Chr12 22742317 22742318 + STOWAWAY51_OS 246 0.0046 (11/2380) 0 * Os_TE_630186 Os_TE_630171 Chr12 22737415 22737416 + TRUNCATOR 2918 0.0017 (5/2927) 0 * * Os_TE_630144 Chr12 22728843 22728844 - RETROSAT2LTR 12796 0.0829 (248/2991) 0 * * Os_TE_630142 Chr12 22728798 22728799 + SPMLIKE 10989 0.0007 (2/2987) 0 * * Os_TE_630134 Chr12 22726867 22727530 + TWIFB1 3737 0.4519 (1269/2808) 1 Intact * Os_TE_630123 Chr12 22721015 22721016 - ORSgTEMT00500068 138 0.0004 (1/2820) 0 * * Os_TE_630119 Chr12 22720226 22720225 + OSTE15 1168 0.0359 (105/2921) 0 * * Os_TE_630114 Chr12 22719521 22719520 - COPIA2-LTR_OS 6433 0.0004 (1/2736) 0 * * Os_TE_630091 Chr12 22715957 22715958 - RETRO2_LTR 12874 0.0039 (10/2572) 0 * * Os_TE_630069 Chr12 22709069 22709068 - ORSgTEMT01601834 234 0.1182 (352/2979) 0 * Os_TE_630068 Os_TE_630068 Chr12 22709066 22709067 - ORSgTEMT01601432 239 0.1204 (359/2982) 0 * Os_TE_630069 Os_TE_630067 Chr12 22708857 22708858 + COPIA2-LTR_OS 6433 0.0010 (3/2989) 0 * Os_TE_630066 Os_TE_630066 Chr12 22708853 22708852 - COPIA2-LTR_OS 6433 0.0010 (3/2986) 0 * Os_TE_630067 Os_TE_630059 Chr12 22704626 22704625 - OSTE18 129 0.0320 (77/2403) 0 * * Os_TE_630058 Chr12 22704468 22704469 + INDITTO 263 0.0254 (61/2404) 0 * Os_TE_630057 Os_TE_630057 Chr12 22704466 22704465 - INDITTO 263 0.0258 (62/2402) 0 * Os_TE_630058 Os_TE_630048 Chr12 22699715 22675517 + SPMLIKE 10989 0.4326 (1283/2966) 1 Intact * Os_TE_630042 Chr12 22674923 22674924 + TESSBIG 4057 0.0014 (4/2951) 0 * Os_TE_630041 Os_TE_630041 Chr12 22674916 22674915 - TESSBIG 4057 0.0014 (4/2876) 0 * Os_TE_630042 Os_TE_630034 Chr12 22673257 22673258 + MPING 430 0.0007 (2/2982) 0 * Os_TE_630033 Os_TE_630033 Chr12 22673255 22673254 - MPING 430 0.0007 (2/2985) 0 * Os_TE_630034 Os_TE_630031 Chr12 22672983 22672984 - INDITTO 263 0.0090 (27/2997) 0 * Os_TE_630030 Os_TE_630030 Chr12 22672981 22672980 + INDITTO 263 0.0097 (29/2997) 0 * Os_TE_630031 Os_TE_630029 Chr12 22672838 22672839 + HARB-1_OS 5166 0.0010 (3/2979) 0 * Os_TE_630028 Os_TE_630028 Chr12 22672836 22672835 - HARB-1_OS 5166 0.0010 (3/2990) 0 * Os_TE_630029 Os_TE_629996 Chr12 22668459 22668460 - ORSgTEMT00400006 152 0.0040 (12/2986) 0 * * Os_TE_629993 Chr12 22668290 22668289 - ORSgTEMT00900099 250 0.0020 (6/2976) 0 * Os_TE_629992 Os_TE_629992 Chr12 22668286 22668287 - ORSgTEMT00901723 248 0.0017 (5/2981) 0 * Os_TE_629993 Os_TE_629982 Chr12 22665515 22665516 + OSTE20 496 0.3537 (885/2502) 0 * Os_TE_629981 Os_TE_629981 Chr12 22665511 22665510 + OSTE20 496 0.4651 (1364/2933) 0 * Os_TE_629982 Os_TE_629977 Chr12 22664608 22664607 + ATLANTYS-LTR_OS 13740 0.0020 (6/2978) 0 * * Os_TE_629960 Chr12 22656316 22656315 + TREP215 239 0.0020 (6/2967) 0 * * Os_TE_629946 Chr12 22649224 22649225 - ORSgTEMT02000029 181 0.0897 (267/2978) 0 * * Os_TE_629935 Chr12 22646935 22646934 - ORSgTEMT00900965 216 0.0036 (6/1663) 0 * * Os_TE_629933 Chr12 22646348 22646347 - RIRE2_LTR 11306 0.0120 (18/1497) 0 * * Os_TE_629918 Chr12 22645561 22645562 + STOWAWAY42_OS 242 0.0860 (256/2978) 0 * * Os_TE_629916 Chr12 22645121 22645120 + ORSgTEMT01601591 242 0.0004 (1/2742) 0 * Os_TE_629915 Os_TE_629915 Chr12 22645115 22645116 + STOWAWAY51_OS 246 0.0004 (1/2738) 0 * Os_TE_629916 Os_TE_629892 Chr12 22635329 22635330 - STOWAWAY47_OS 148 0.0857 (255/2975) 0 * * Os_TE_629889 Chr12 22633693 22633694 + COPIA2-LTR_OS 6433 0.0003 (1/2952) 0 * Os_TE_629888 Os_TE_629888 Chr12 22633689 22633688 - COPIA2-LTR_OS 6433 0.0003 (1/2956) 0 * Os_TE_629889 Os_TE_629887 Chr12 22631238 22631239 + ORSiTERTOOT00296 5553 0.0017 (5/2993) 0 * Os_TE_629886 Os_TE_629886 Chr12 22631234 22631233 - SC-3_LTR 5748 0.0017 (5/2992) 0 * Os_TE_629887 Os_TE_629867 Chr12 22627651 22627652 - ORSgTETNOOT00505 201 0.0014 (4/2865) 0 * * Os_TE_629865 Chr12 22627227 22627228 + SZ-62LTR 3649 0.0284 (78/2751) 0 * Os_TE_629864 Os_TE_629864 Chr12 22627223 22627222 - SZ-62LTR 3649 0.0277 (75/2711) 0 * Os_TE_629865 Os_TE_629854 Chr12 22625346 22625347 - INDITTO 263 0.0004 (1/2435) 0 * Os_TE_629853 Os_TE_629853 Chr12 22625344 22625343 + INDITTO 263 0.0004 (1/2462) 0 * Os_TE_629854 Os_TE_629842 Chr12 22622873 22622874 + ORSgTEMT01601122 212 0.0020 (6/2961) 0 * * Os_TE_629837 Chr12 22622587 22622588 + INDITTO 263 0.4702 (1404/2986) 0 * * Os_TE_629804 Chr12 22609281 22609282 + MUDRN2_OS 756 0.0027 (8/2924) 0 * * Os_TE_629781 Chr12 22595345 22595346 - COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * * Os_TE_629759 Chr12 22590015 22590016 - RETRO2_LTR 12874 0.0010 (3/2974) 0 * Os_TE_629758 Os_TE_629758 Chr12 22590011 22590010 + SZLTR 1249 0.0010 (3/2968) 0 * Os_TE_629759 Os_TE_629757 Chr12 22588109 22588110 + RETROSAT4_LTR 13504 0.0476 (141/2962) 0 * Os_TE_629756 Os_TE_629756 Chr12 22588105 22588104 - RETROSAT4_LTR 13504 0.0508 (151/2970) 0 * Os_TE_629757 Os_TE_629740 Chr12 22583828 22583829 + COPIA2-LTR_OS 6433 0.0003 (1/2961) 0 * Os_TE_629739 Os_TE_629739 Chr12 22583824 22583823 - COPIA2-LTR_OS 6433 0.0003 (1/2960) 0 * Os_TE_629740 Os_TE_629738 Chr12 22583663 22583662 + ORSgTEMT01700513 151 0.0017 (5/2954) 0 * Os_TE_629737 Os_TE_629737 Chr12 22583656 22583657 - STOWAWAY1_OS 149 0.0020 (6/2950) 0 * Os_TE_629738 Os_TE_629736 Chr12 22583596 22583597 - ORSgTETN00200001 10994 0.0678 (200/2950) 0 * Os_TE_629735 Os_TE_629735 Chr12 22583594 22583593 + SPMLIKE 10989 0.0732 (217/2963) 0 * Os_TE_629736 Os_TE_629733 Chr12 22582987 22582988 + EnSpm-13_OS 11171 0.0021 (6/2900) 0 * * Os_TE_629728 Chr12 22582485 22582484 - COPIA2-LTR_OS 6433 0.0385 (114/2963) 0 * * Os_TE_629721 Chr12 22577976 22577977 - SZ-67LTR 1540 0.0212 (62/2926) 0 * * Os_TE_629715 Chr12 22577062 22577063 + F569 228 0.1540 (461/2994) 0 * Os_TE_629714 Os_TE_629714 Chr12 22577061 22577060 - F569 228 0.1552 (464/2990) 0 * Os_TE_629715 Os_TE_629712 Chr12 22576524 22576525 - DS-RICE2N 613 0.0732 (219/2993) 0 * Os_TE_629711 Os_TE_629711 Chr12 22576517 22576516 + DS-RICE2N 613 0.0726 (217/2991) 0 * Os_TE_629712 Os_TE_629702 Chr12 22571006 22571005 - ORSgTEMT04600010 284 0.0020 (6/2951) 0 * Os_TE_629701 Os_TE_629701 Chr12 22571005 22571006 + ORSgTEMT04600010 284 0.0020 (6/2942) 0 * Os_TE_629702 Os_TE_629698 Chr12 22569272 22569273 - COPI2_LTR 4733 0.0003 (1/2977) 0 * Os_TE_629697 Os_TE_629697 Chr12 22569268 22569267 + COPI2_LTR 4733 0.0003 (1/2976) 0 * Os_TE_629698 Os_TE_629696 Chr12 22569127 22569128 - ORSgTETN00200001 10994 0.0369 (110/2978) 0 * Os_TE_629695 Os_TE_629695 Chr12 22569124 22569123 + CACTA-M 1129 0.0368 (109/2962) 0 * Os_TE_629696 Os_TE_629693 Chr12 22568964 22568963 + ORSgTETNOOT00908 242 0.0051 (15/2970) 0 * * Os_TE_629692 Chr12 22568948 22568949 - AMYLTP 383 0.0024 (7/2974) 0 * Os_TE_629691 Os_TE_629691 Chr12 22568944 22568943 + AMYLTP 383 0.0024 (7/2962) 0 * Os_TE_629692 Os_TE_629674 Chr12 22564570 22564569 - SEVERIN-2 1952 0.1303 (372/2856) 0 * Os_TE_629673 Os_TE_629673 Chr12 22564569 22564570 + SEVERIN-2 1952 0.1318 (380/2884) 0 * Os_TE_629674 Os_TE_629669 Chr12 22563775 22563774 - ORSgTEMT02400246 177 0.0075 (22/2931) 0 * * Os_TE_629655 Chr12 22560746 22560186 - SZ-33LTR 575 0.8636 (2570/2976) 1 Intact * Os_TE_629638 Chr12 22546338 22546339 + ORSgTEMT00100291 345 0.1442 (427/2961) 0 * * Os_TE_629632 Chr12 22545259 22545258 - ORSgTETN00200001 10994 0.1240 (334/2694) 0 * * Os_TE_629617 Chr12 22543489 22543490 + SZLTR 1249 0.0053 (16/2991) 0 * Os_TE_629616 Os_TE_629616 Chr12 22543485 22543484 - RETRO2_LTR 12874 0.0057 (17/2988) 0 * Os_TE_629617 Os_TE_629614 Chr12 22543214 22543213 + RIRE2_LTR 11306 0.0003 (1/2981) 0 * * Os_TE_629608 Chr12 22542342 22542341 + DS-RICE4N 715 0.0198 (59/2976) 0 * * Os_TE_629600 Chr12 22541448 22541449 + ORSgTEMT00500095 150 0.0010 (3/2925) 0 * Os_TE_629599 Os_TE_629599 Chr12 22541447 22541446 + ORSgTEMT00502215 139 0.0010 (3/2926) 0 * Os_TE_629600 Os_TE_629595 Chr12 22539300 22539301 - OSTONOR1_LTR 6440 0.0003 (1/2989) 0 * Os_TE_629594 Os_TE_629594 Chr12 22539296 22539295 + OSTONOR1_LTR 6440 0.0003 (1/2986) 0 * Os_TE_629595 Os_TE_629585 Chr12 22538372 22538373 - NDNA1TNA_OS 334 0.0081 (24/2977) 0 * Os_TE_629584 Os_TE_629584 Chr12 22538370 22538369 + NDNA1TNA_OS 334 0.0081 (24/2980) 0 * Os_TE_629585 Os_TE_629583 Chr12 22538304 22538303 - ORSgTEMT01400014 209 0.0010 (3/2964) 0 * Os_TE_629582 Os_TE_629582 Chr12 22538299 22538300 + ORSgTEMT01400032 215 0.0010 (3/2969) 0 * Os_TE_629583 Os_TE_629565 Chr12 22529996 22529995 - ORSgTEMT02200001 208 0.0017 (5/2987) 0 * * Os_TE_629562 Chr12 22529734 22529735 - TNR2A 152 0.0010 (3/2985) 0 * Os_TE_629561 Os_TE_629561 Chr12 22529718 22529717 + TNR2A 152 0.0010 (3/2986) 0 * Os_TE_629562 Os_TE_629558 Chr12 22529169 22529168 + GYPSO_LTR 9828 0.0027 (6/2258) 0 * * Os_TE_629490 Chr12 22492279 22492278 + RIREX_LTR 8828 0.0669 (71/1061) 0 * * Os_TE_629486 Chr12 22486217 22486218 - RETRO1_LTR 8314 0.0051 (11/2178) 0 * * Os_TE_629479 Chr12 22484204 22484205 - ORSgTERT00201216 11284 0.0004 (1/2254) 0 * Os_TE_629478 Os_TE_629478 Chr12 22484200 22484199 - RIRE2_LTR 11306 0.0004 (1/2267) 0 * Os_TE_629479 Os_TE_629470 Chr12 22481364 22481365 + AMYLTP 383 0.0176 (42/2383) 0 * Os_TE_629469 Os_TE_629469 Chr12 22481356 22481355 - AMYLTP 383 0.0190 (45/2374) 0 * Os_TE_629470 Os_TE_629461 Chr12 22477180 22477179 + ORSiTEMT01100041 453 0.0009 (1/1172) 0 * * Os_TE_629458 Chr12 22476344 22476345 - RIREX_LTR 8828 0.0228 (34/1489) 0 * * Os_TE_629455 Chr12 22475511 22475331 - ORSgTETNOOT01967 202 0.8561 (1142/1334) 1 Intact * Os_TE_629442 Chr12 22465629 22465628 + COPI2_LTR 4733 0.0003 (1/2919) 0 * * Os_TE_629439 Chr12 22463410 22463409 - ORSgTEMT02600002 356 0.0053 (14/2633) 0 * * Os_TE_629431 Chr12 22457113 22457114 - ORSgTEMT00500578 129 0.6434 (1866/2900) 0 * * Os_TE_629430 Chr12 22457055 22456914 + ORSgTEMT00500476 150 0.3936 (1074/2729) 1 Intact Os_TE_629428 Os_TE_629428 Chr12 22456907 22457052 + ORSgTEMT00500498 155 0.3894 (1107/2843) 1 Intact Os_TE_629430 Os_TE_629421 Chr12 22454712 22454711 + CRM-LTR_OS 7749 0.1569 (467/2977) 0 * * Os_TE_629418 Chr12 22453284 22453285 + ORSgTETNOOT01930 140 0.0021 (6/2910) 0 * * Os_TE_629411 Chr12 22451752 22451753 - OLO24 345 0.4818 (1442/2993) 0 * * Os_TE_629404 Chr12 22450554 22450553 - ORSgTEMT01700915 154 0.0039 (7/1777) 0 * * Os_TE_629397 Chr12 22449350 22449351 - STOWAWAY11_OS 292 0.4477 (1266/2828) 0.12 * * Os_TE_629396 Chr12 22449333 22449334 + STOWAWAY21_OS 243 0.0020 (6/2944) 0 * * Os_TE_629393 Chr12 22446582 22446345 - ORSgTEMT01601208 238 0.6284 (1539/2449) 1 Intact Os_TE_629392 Os_TE_629392 Chr12 22446352 22446582 - ORSgTEMT01600223 220 0.5798 (1573/2713) -1 Intact Os_TE_629393 Os_TE_629387 Chr12 22445526 22445527 + MDM2 312 0.0048 (14/2915) 0 * Os_TE_629386 Os_TE_629386 Chr12 22445518 22445517 + MDM2 312 0.0093 (15/1621) 0 * Os_TE_629387 Os_TE_629379 Chr12 22443112 22443002 + TREP220 109 0.5629 (1642/2917) 1 Intact * Os_TE_629376 Chr12 22442988 22442989 - ORSgTEMT01600662 238 0.0851 (251/2948) 0 * * Os_TE_629374 Chr12 22442679 22442417 - ORSgTEMT00101064 263 0.6079 (1628/2678) 1 Intact * Os_TE_629372 Chr12 22441494 22441493 - DITTO-2 235 0.0015 (4/2734) 0 * * Os_TE_629371 Chr12 22440368 22440165 - ORSgTEMT01701302 154 0.5276 (1541/2921) 1 Intact Os_TE_629369 Os_TE_629369 Chr12 22440165 22440368 - ORSgTEMT01700299 212 0.5455 (1392/2552) 1 Intact Os_TE_629371 Os_TE_629367 Chr12 22440010 22440011 - BAJIELTR 4500 0.0028 (4/1425) 0 * * Os_TE_629363 Chr12 22439126 22438796 + ORSgTEMT00101012 342 0.6668 (1589/2383) 1 Intact * Os_TE_629356 Chr12 22438298 22438299 + GYPSY-A_LTR 8951 0.0027 (8/2951) 0 * Os_TE_629355 Os_TE_629355 Chr12 22438293 22438292 - GYPSY-A_LTR 8951 0.0033 (8/2416) 0 * Os_TE_629356 Os_TE_629352 Chr12 22437834 22437835 - SZ-62LTR 3649 0.0359 (106/2954) 0 * Os_TE_629351 Os_TE_629351 Chr12 22437830 22437829 + SZ-62LTR 3649 0.0411 (110/2675) 0 * Os_TE_629352 Os_TE_629346 Chr12 22437334 22437097 + STOWAWAY44_OS 240 0.5402 (1593/2949) 0.86 Intact Os_TE_629342 Os_TE_629342 Chr12 22437097 22437334 + STOWAWAY44_OS 240 0.6488 (1618/2494) 1 Intact Os_TE_629346 Os_TE_629339 Chr12 22436396 22436395 + EnSpm-10_OS 11265 0.0017 (5/2957) 0 * * Os_TE_629337 Chr12 22435679 22435678 - MERMITEA 1710 0.0003 (1/2908) 0 * * Os_TE_629333 Chr12 22434077 22433955 - p-SINE1_OS 155 0.5623 (1624/2888) 1 Intact * Os_TE_629332 Chr12 22433929 22433930 - ORSgTEMT01602413 239 0.4475 (1283/2867) 0 * * Os_TE_629328 Chr12 22433105 22433812 - BAJIELTR 4500 0.6161 (1626/2639) 1 Solo_LTR * Os_TE_629323 Chr12 22432617 22432398 + ORSgTEMT00500476 150 0.5633 (1594/2830) 1 Intact * Os_TE_629309 Chr12 22429089 22429090 - RIREX_LTR 8828 0.0003 (1/2996) 0 * Os_TE_629308 Os_TE_629308 Chr12 22429085 22429084 + RIREX_LTR 8828 0.0003 (1/2995) 0 * Os_TE_629309 Os_TE_629307 Chr12 22428464 22428465 - RIRE2_LTR 11306 0.0543 (162/2982) 0 * * Os_TE_629305 Chr12 22427782 22427783 - RIRE2_LTR 11306 0.0004 (1/2819) 0 * Os_TE_629304 Os_TE_629304 Chr12 22427778 22427777 + RIRE2_LTR 11306 0.0004 (1/2822) 0 * Os_TE_629305 Os_TE_629298 Chr12 22422510 22422282 + F569 228 0.4088 (1197/2928) 1 Intact Os_TE_629297 Os_TE_629297 Chr12 22422282 22422510 - F569 228 0.4075 (1192/2925) 1 Intact Os_TE_629298 Os_TE_629296 Chr12 22422051 22422052 + COPIA2-LTR_OS 6433 0.0008 (1/1224) 0 * Os_TE_629295 Os_TE_629295 Chr12 22422047 22422046 - COPIA2-LTR_OS 6433 0.0003 (1/2922) 0 * Os_TE_629296 Os_TE_629243 Chr12 22406764 22406765 + COPI2_LTR 4733 0.0005 (1/1827) 0 * * Os_TE_629232 Chr12 22402483 22402712 - ORSgTEMT00900965 216 0.8849 (1561/1764) 1 Intact * Os_TE_629225 Chr12 22399252 22399253 - SZ-36LTR 5825 0.2503 (412/1646) 0 * Os_TE_629224 Os_TE_629224 Chr12 22399248 22399247 + ORSiCMCM00100017 5674 0.1352 (403/2980) 0 * Os_TE_629225 Os_TE_629190 Chr12 22374875 22374876 - TYPEM 227 0.0003 (1/2995) 0 * * Os_TE_629189 Chr12 22374645 22374646 - CACTA-M 1129 0.0024 (7/2976) 0 * Os_TE_629188 Os_TE_629188 Chr12 22374643 22374642 + CACTA-H 1152 0.0017 (5/2973) 0 * Os_TE_629189 Os_TE_629186 Chr12 22373652 22373653 + RIREX_LTR 8828 0.0023 (7/2992) 0 * Os_TE_629185 Os_TE_629185 Chr12 22373648 22373647 - RIREX_LTR 8828 0.0023 (7/2993) 0 * Os_TE_629186 Os_TE_629184 Chr12 22371842 22371843 + COPIA2-LTR_OS 6433 0.0003 (1/2944) 0 * Os_TE_629183 Os_TE_629183 Chr12 22371838 22371837 - COPIA2-LTR_OS 6433 0.0003 (1/2971) 0 * Os_TE_629184 Os_TE_629176 Chr12 22369312 22369311 + SPMLIKE 10989 0.0013 (4/2978) 0 * * Os_TE_629163 Chr12 22361446 22361445 - TREP215 239 0.0612 (177/2890) 0 * Os_TE_629162 Os_TE_629162 Chr12 22361442 22361443 + ORSgTEMT01602051 240 0.0616 (176/2858) 0 * Os_TE_629163 Os_TE_629159 Chr12 22361109 22361108 - ORSgTERT00201216 11284 0.0024 (7/2889) 0 * * Os_TE_629154 Chr12 22357133 22357132 + ORSgTEMT01602181 239 0.0571 (163/2857) 0 * * Os_TE_629145 Chr12 22355099 22355100 + SZ-48LTR 3632 0.0195 (57/2929) 0 * Os_TE_629144 Os_TE_629144 Chr12 22355095 22355094 - SZ-48LTR 3632 0.0206 (61/2966) 0 * Os_TE_629145 Os_TE_629140 Chr12 22354623 22354624 + BAJIELTR 4500 0.0099 (29/2928) 0 * * Os_TE_629119 Chr12 22341833 22341834 + ORSiTETN00100011 676 0.3378 (737/2182) 0 * Os_TE_629118 Os_TE_629118 Chr12 22341823 22341822 + DS-RICE4N 715 0.4635 (1258/2714) 0 * Os_TE_629119 Os_TE_629114 Chr12 22340913 22340912 - ENSPM3_OS 10837 0.0022 (6/2758) 0 * * Os_TE_629108 Chr12 22338190 22338189 - TRUNCATOR2_LTR 2904 0.0004 (1/2760) 0 * * Os_TE_629100 Chr12 22335231 22335232 - RIRE2_LTR 11306 0.0022 (6/2739) 0 * * Os_TE_629097 Chr12 22335022 22335021 - ORSgTEMT01600750 238 0.0014 (4/2773) 0 * * Os_TE_629080 Chr12 22332269 22332270 - ORSiTERTOOT00291 11421 0.0004 (1/2842) 0 * * Os_TE_629077 Chr12 22331262 22331261 - ENSPM4_OS 11610 0.0047 (13/2745) 0 * * Os_TE_629074 Chr12 22330868 22330867 + SEVERIN-2 1952 0.0221 (61/2765) 0 * * Os_TE_629073 Chr12 22329405 22329404 - RPO_OS 1983 0.0004 (1/2788) 0 * Os_TE_629072 Os_TE_629072 Chr12 22329404 22329405 + RPO_OS 1983 0.0004 (1/2789) 0 * Os_TE_629073 Os_TE_629071 Chr12 22329109 22329108 - ORSgTEMT01601696 238 0.0047 (13/2779) 0 * Os_TE_629070 Os_TE_629070 Chr12 22329106 22329107 + ORSgTEMT01602181 239 0.0046 (12/2599) 0 * Os_TE_629071 Os_TE_629068 Chr12 22326735 22326734 + COPI1_LTR 4721 0.0011 (2/1794) 0 * * Os_TE_629052 Chr12 22309932 22312434 - ORSgTEMT01601493 303 0.6354 (948/1492) 1 Intact * Os_TE_629051 Chr12 22309634 22305933 + RETROSAT4_LTR 13504 0.6407 (945/1475) 1 Solo_LTR Os_TE_629050 Os_TE_629050 Chr12 22305933 22309634 - SZ-35LTR 3853 0.3596 (971/2700) 1 Intact Os_TE_629051 Os_TE_629049 Chr12 22305122 22305123 - RIREX_LTR 8828 0.0003 (1/2992) 0 * Os_TE_629048 Os_TE_629048 Chr12 22305118 22305117 + RIREX_LTR 8828 0.0004 (1/2264) 0 * Os_TE_629049 Os_TE_629047 Chr12 22304860 22304861 + TYPEU3 380 0.1148 (292/2543) 0 * * Os_TE_629046 Chr12 22304841 22304842 + TRUNCATOR 2918 0.0055 (14/2529) 0 * * Os_TE_629045 Chr12 22304788 22304563 - DELAY 226 0.8960 (2282/2547) 1 Intact * Os_TE_629041 Chr12 22303508 22303509 + HELITRON7_OS 10153 0.0922 (234/2537) 0 * * Os_TE_629039 Chr12 22303293 22303182 + ORSgTEMT01700549 156 0.8942 (2257/2524) 1 Intact Os_TE_629037 Os_TE_629037 Chr12 22303182 22303293 + ORSgTEMT01700549 156 0.8899 (2256/2535) 1 Intact Os_TE_629039 Os_TE_629034 Chr12 22303024 22302777 + ORSgTEMT00901844 250 0.8908 (2251/2527) 1 Intact Os_TE_629033 Os_TE_629033 Chr12 22302775 22303024 - ORSgTEMT00900099 250 0.8923 (2271/2545) 1 Intact Os_TE_629034 Os_TE_629031 Chr12 22302539 22302322 - STOWAWAY18_OS 216 0.8987 (2281/2538) 1 Intact Os_TE_629028 Os_TE_629028 Chr12 22302322 22302537 - STOWAWAY18_OS 216 0.8936 (2275/2546) 1 Intact Os_TE_629031 Os_TE_629021 Chr12 22299333 22299334 - SZ-22_LTR 4403 0.0004 (1/2274) 0 * Os_TE_629020 Os_TE_629020 Chr12 22299329 22299328 + ORSiTERTOOT00226 792 0.0004 (1/2271) 0 * Os_TE_629021 Os_TE_629015 Chr12 22297120 22297121 - EnSpm-13_OS 11171 0.0004 (1/2468) 0 * Os_TE_629014 Os_TE_629014 Chr12 22297117 22297116 + EnSpm-13_OS 11171 0.0004 (1/2462) 0 * Os_TE_629015 Os_TE_629012 Chr12 22296495 22296494 - TYPEU3 380 0.0848 (208/2452) 0 * * Os_TE_629009 Chr12 22295762 22295763 + Cassandra_OS-LTR 764 0.0039 (8/2069) 0 * * Os_TE_628956 Chr12 22255259 22254848 + ORSgTEMT00300069 394 0.8165 (2060/2523) 1 Intact Os_TE_628952 Os_TE_628952 Chr12 22254841 22255253 + ORSgTEMT00300064 397 0.8169 (2066/2529) 1 Intact Os_TE_628956 Os_TE_628950 Chr12 22254801 22254800 + RIRE5-LTR_OS 6427 0.0044 (11/2514) 0 * * Os_TE_628948 Chr12 22253804 22253803 + COPIA2-LTR_OS 6433 0.0104 (27/2593) 0 * * Os_TE_628933 Chr12 22247254 22247255 - RETRO2_LTR 12874 0.1044 (264/2528) 0 * Os_TE_628932 Os_TE_628932 Chr12 22247250 22247249 + RETRO2_LTR 12874 0.1051 (265/2521) 0 * Os_TE_628933 Os_TE_628870 Chr12 22225813 22225812 - RIREX_LTR 8828 0.0070 (18/2584) 0 * * Os_TE_628869 Chr12 22225693 22225456 - ORSgTEMT01601432 239 0.1188 (302/2542) 1 Intact * Os_TE_628864 Chr12 22225214 22225215 + RPO_OS 1983 0.8645 (2195/2539) 0 * Os_TE_628863 Os_TE_628863 Chr12 22225210 22225209 - RPO_OS 1983 0.8732 (2239/2564) 0 * Os_TE_628864 Os_TE_628846 Chr12 22219790 22219791 - ORSgTEMT00600304 361 0.0056 (4/713) 0 * Os_TE_628845 Os_TE_628845 Chr12 22219787 22219786 - CASTAWAY 364 0.0008 (2/2513) 0 * Os_TE_628846 Os_TE_628844 Chr12 22219495 22219496 + F569 228 0.0011 (3/2651) 0 * Os_TE_628843 Os_TE_628843 Chr12 22219493 22219492 - F569 228 0.0007 (2/2681) 0 * Os_TE_628844 Os_TE_628842 Chr12 22219289 22219290 - SZ-62LTR 3649 0.0078 (20/2570) 0 * Os_TE_628841 Os_TE_628841 Chr12 22219285 22219284 + SZ-62LTR 3649 0.0070 (20/2846) 0 * Os_TE_628842 Os_TE_628839 Chr12 22219212 22219211 - ORSgTEMT00600085 364 0.0021 (6/2836) 0 * * Os_TE_628837 Chr12 22218661 22218662 - RIRE2_LTR 11306 0.0085 (22/2590) 0 * Os_TE_628836 Os_TE_628836 Chr12 22218657 22218656 - ORSgTERT00201216 11284 0.0089 (23/2591) 0 * Os_TE_628837 Os_TE_628835 Chr12 22217766 22217767 + SC-8_LTR 4951 0.0004 (1/2500) 0 * Os_TE_628834 Os_TE_628834 Chr12 22217762 22217761 - SC-8_LTR 4951 0.0004 (1/2587) 0 * Os_TE_628835 Os_TE_628830 Chr12 22215814 22215815 + SZ-28LTR 262 0.0035 (9/2579) 0 * Os_TE_628829 Os_TE_628829 Chr12 22215810 22215809 - SZ-28LTR 262 0.0031 (8/2551) 0 * Os_TE_628830 Os_TE_628828 Chr12 22213853 22213852 - ORSgTEMT01602404 253 0.0081 (21/2599) 0 * Os_TE_628827 Os_TE_628827 Chr12 22213850 22213851 + ORSgTEMT01602181 239 0.0081 (21/2603) 0 * Os_TE_628828 Os_TE_628821 Chr12 22205216 22205215 - EnSpm-12_OS 12603 0.0526 (155/2946) 0 * * Os_TE_628781 Chr12 22198583 22198584 + STOWAWAY11_OS 292 0.0122 (18/1476) 0 * * Os_TE_628751 Chr12 22193995 22193996 - ORSgTEMT00101166 338 0.0634 (176/2776) 0 * * Os_TE_628740 Chr12 22191190 22191191 - SZ-67LTR 1540 0.0004 (1/2673) 0 * * Os_TE_628733 Chr12 22189853 22189854 + MERMITEA 1710 0.0770 (230/2988) 0 * * Os_TE_628731 Chr12 22189385 22189384 - ORSgTETNOOT01930 140 0.0786 (235/2989) 0 * * Os_TE_628729 Chr12 22188691 22188690 - ORSgTEMT00501911 152 0.1336 (398/2979) 0 * Os_TE_628728 Os_TE_628728 Chr12 22188687 22188688 + ORSgTEMT00500361 192 0.1336 (399/2987) 0 * Os_TE_628729 Os_TE_628726 Chr12 22187357 22184473 + SEVERIN-2 1952 0.4303 (1281/2977) 1 Intact * Os_TE_628724 Chr12 22180973 22180974 + OLO24 345 0.0194 (58/2985) 0 * Os_TE_628723 Os_TE_628723 Chr12 22180971 22180970 - OLO24 345 0.0191 (57/2980) 0 * Os_TE_628724 Os_TE_628712 Chr12 22172824 22172823 + ORSgTEMT01601488 239 0.0003 (1/2976) 0 * Os_TE_628711 Os_TE_628711 Chr12 22172821 22172822 - ORSgTEMT01601208 238 0.0007 (2/2926) 0 * Os_TE_628712 Os_TE_628708 Chr12 22171686 22171424 - ORSgTEMT00101174 225 0.8918 (2564/2875) 1 Intact * Os_TE_628699 Chr12 22170593 22170266 + ORSgTEMT00101674 340 0.8965 (2625/2928) 1 Intact * Os_TE_628683 Chr12 22164891 22164544 - CASTAWAY 364 0.8900 (2662/2991) 1 Intact * Os_TE_628680 Chr12 22161384 22161383 + ORSgTETNOOT01930 140 0.0021 (6/2891) 0 * Os_TE_628679 Os_TE_628679 Chr12 22161383 22161384 + ORSgTEMT00502327 143 0.0010 (2/2095) 0 * Os_TE_628680 Os_TE_628677 Chr12 22161061 22161060 + ORSgTEMT00600272 361 0.0231 (21/908) 0 * * Os_TE_628668 Chr12 22158564 22158774 - ORSgTEMT01601122 212 0.5688 (918/1614) 1 Intact * Os_TE_628639 Chr12 22141918 22161052 + SINE03_OS 360 0.6578 (919/1397) 1 Intact * Os_TE_628636 Chr12 22140355 22140354 - ORSgTETNOOT00823 234 0.0086 (24/2802) 0 * * Os_TE_628634 Chr12 22140280 22140141 - ORSgTEMT00501447 126 0.3156 (858/2719) 1 Intact Os_TE_628631 Os_TE_628631 Chr12 22140138 22140277 + ORSgTEMT00500201 140 0.3046 (868/2850) 1 Intact Os_TE_628634 Os_TE_628630 Chr12 22140056 22140055 - STOWAWAY44_OS 240 0.0014 (4/2825) 0 * Os_TE_628629 Os_TE_628629 Chr12 22140046 22140047 + STOWAWAY44_OS 240 0.0015 (4/2693) 0 * Os_TE_628630 Os_TE_628628 Chr12 22140016 22140015 + NDNA1TNA_OS 334 0.1006 (278/2764) 0 * * Os_TE_628626 Chr12 22138613 22138460 - ORSgTEMT01701254 154 0.5856 (1728/2951) 1 Intact * Os_TE_628616 Chr12 22129272 22129273 - OSR3_LTR 5201 0.0134 (40/2977) 0 * Os_TE_628615 Os_TE_628615 Chr12 22129268 22129267 + OSR3_LTR 5201 0.0141 (42/2975) 0 * Os_TE_628616 Os_TE_628611 Chr12 22125057 22125058 - ORSgTEMT02400179 221 0.0045 (13/2880) -1 * Os_TE_628610 Os_TE_628610 Chr12 22125056 22125055 - TYPEM 227 0.0044 (13/2966) 0 * Os_TE_628611 Os_TE_628598 Chr12 22119984 22119983 - RIRE2_LTR 11306 0.0003 (1/2976) 0 * * Os_TE_628592 Chr12 22117457 22117458 - SZ-22_LTR 4403 0.0007 (2/2953) 0 * Os_TE_628591 Os_TE_628591 Chr12 22117453 22117452 + ORSiTERTOOT00226 792 0.0009 (2/2184) 0 * Os_TE_628592 Os_TE_628580 Chr12 22113466 22113467 + COPI2_LTR 4733 0.0032 (9/2849) 0 * * Os_TE_628576 Chr12 22107832 22107588 - STOWAWAY35_OS 248 0.2984 (883/2959) 1 Intact Os_TE_628574 Os_TE_628574 Chr12 22107586 22107834 + STOWAWAY49_OS 241 0.3041 (902/2966) 1 Intact Os_TE_628576 Os_TE_628571 Chr12 22106069 22106070 + SEVERIN-2 1952 0.1011 (287/2840) 0 * * Os_TE_628570 Chr12 22106043 22106042 + MuDR4_OS 7610 0.0047 (13/2764) 0 * * Os_TE_628567 Chr12 22103949 22103948 - LINE-6_OS 4886 0.6775 (2017/2977) 0 * * Os_TE_628565 Chr12 22102932 22101845 - OSTE14 885 0.3459 (926/2677) 1 Intact Os_TE_628564 Os_TE_628564 Chr12 22101841 22102932 - OSTE14 885 0.3274 (926/2828) 1 Intact Os_TE_628565 Os_TE_628562 Chr12 22100514 22101752 + CACTA-L 1162 0.3221 (914/2838) 1 Intact * Os_TE_628545 Chr12 22093310 22093311 - MERMITED 1572 0.0017 (5/2985) 0 * * Os_TE_628544 Chr12 22093144 22093145 + EXPLORER 210 0.0014 (4/2954) 0 * * Os_TE_628526 Chr12 22090621 22090864 - ORSgTEMT01601060 237 0.8654 (1755/2028) -1 Intact * Os_TE_628519 Chr12 22087313 22087314 + TELIA 141 0.0007 (2/2697) 0 * Os_TE_628518 Os_TE_628518 Chr12 22087305 22087304 - TELIA 141 0.0004 (1/2733) 0 * Os_TE_628519 Os_TE_628510 Chr12 22085586 22085587 + ORSgTEMT00500411 151 0.1056 (315/2984) 0 * Os_TE_628509 Os_TE_628509 Chr12 22085585 22085584 - GAIJIN 147 0.1049 (313/2984) 0 * Os_TE_628510 Os_TE_628503 Chr12 22083039 22083038 + CACTA-B 1103 0.0086 (23/2676) 0 * Os_TE_628502 Os_TE_628502 Chr12 22083035 22083036 + ORSgTETN00200005 1121 0.0086 (23/2679) 0 * Os_TE_628503 Os_TE_628493 Chr12 22081111 22081112 - ORSgTERT00201216 11284 0.0015 (4/2692) 0 * Os_TE_628492 Os_TE_628492 Chr12 22081107 22081106 - RIRE2_LTR 11306 0.0015 (4/2694) 0 * Os_TE_628493 Os_TE_628491 Chr12 22081088 22081089 + OSTONOR1_LTR 6440 0.0019 (5/2699) 0 * Os_TE_628490 Os_TE_628490 Chr12 22081084 22081083 - OSTONOR1_LTR 6440 0.0019 (5/2700) 0 * Os_TE_628491 Os_TE_628481 Chr12 22079833 22079832 + ORSiTETN00100018 738 0.0019 (5/2693) 0 * * Os_TE_628480 Chr12 22079832 22079833 + DS-RICE4N 715 0.0011 (3/2761) 0 * Os_TE_628479 Os_TE_628479 Chr12 22079822 22079821 + ORSiTETN00100011 676 0.0015 (4/2682) 0 * Os_TE_628480 Os_TE_628476 Chr12 22079146 22079147 + RETRO1_LTR 8314 0.0007 (2/2693) 0 * Os_TE_628475 Os_TE_628475 Chr12 22079142 22079141 - RETRO2A_LTR 12895 0.0007 (2/2864) 0 * Os_TE_628476 Os_TE_628474 Chr12 22079081 22079080 + RIRE2_LTR 11306 0.0018 (5/2793) 0 * * Os_TE_628463 Chr12 22078034 22078035 - MPING 430 0.0004 (1/2689) 0 * Os_TE_628462 Os_TE_628462 Chr12 22078032 22078031 + MPING 430 0.0004 (1/2683) 0 * Os_TE_628463 Os_TE_628458 Chr12 22075474 22075475 + SPMLIKE 10989 0.0027 (8/2972) 0 * Os_TE_628457 Os_TE_628457 Chr12 22075467 22075466 - ORSgTETN00200001 10994 0.0020 (6/2939) 0 * Os_TE_628458 Os_TE_628452 Chr12 22074897 22075341 - RIRE2_LTR 11306 0.9000 (2690/2989) 1 Solo_LTR * Os_TE_628451 Chr12 22074486 22074487 - STOWAWAY1_OS 149 0.0556 (158/2842) 0 * * Os_TE_628449 Chr12 22074115 22073972 + ORSgTEMT00500639 148 0.8999 (2688/2987) 1 Intact * Os_TE_628444 Chr12 22073140 22073141 - ORSgTEMT02400179 221 0.0215 (64/2972) 0 * Os_TE_628443 Os_TE_628443 Chr12 22073139 22073138 - TYPEM 227 0.0212 (63/2969) 0 * Os_TE_628444 Os_TE_628442 Chr12 22072675 22072676 - COPI2_LTR 4733 0.0010 (3/2988) 0 * Os_TE_628441 Os_TE_628441 Chr12 22072671 22072670 + COPI2_LTR 4733 0.0010 (3/2985) 0 * Os_TE_628442 Os_TE_628438 Chr12 22071798 22071799 - COPI2_LTR 4733 0.0019 (5/2573) 0 * Os_TE_628437 Os_TE_628437 Chr12 22071794 22071793 + COPI2_LTR 4733 0.0019 (5/2572) 0 * Os_TE_628438 Os_TE_628436 Chr12 22071089 22071090 - MPING 430 0.3641 (1089/2991) 0 * Os_TE_628435 Os_TE_628435 Chr12 22071087 22071086 + MPING 430 0.3655 (1094/2993) 0 * Os_TE_628436 Os_TE_628433 Chr12 22070838 22070837 - ORSgTETN00200001 10994 0.0010 (3/2998) 0 * * Os_TE_628424 Chr12 22067301 22067302 - ORSgTETNOOT01607 258 0.0007 (2/2978) 0 * * Os_TE_628405 Chr12 22063470 22063469 + ORSiOTOT00000037 220 0.0030 (9/2993) 0 * * Os_TE_628404 Chr12 22062480 22062481 - COPIA2-LTR_OS 6433 0.0534 (160/2995) 0 * Os_TE_628403 Os_TE_628403 Chr12 22062476 22062475 + COPIA2-LTR_OS 6433 0.0534 (160/2996) 0 * Os_TE_628404 Os_TE_628400 Chr12 22061181 22061182 - ORSgTETN00200001 10994 0.0057 (17/2979) 0 * Os_TE_628399 Os_TE_628399 Chr12 22061179 22061178 + SPMLIKE 10989 0.0057 (17/2979) 0 * Os_TE_628400 Os_TE_628393 Chr12 22059380 22059381 + ORSiTERT00200145 12238 0.1015 (302/2974) 0 * * Os_TE_628388 Chr12 22059085 22058848 + ORSgTEMT01602188 240 0.8987 (2654/2953) 1 Intact Os_TE_628387 Os_TE_628387 Chr12 22058848 22059085 - TREP215 239 0.8972 (2627/2928) 1 Intact Os_TE_628388 Os_TE_628386 Chr12 22058773 22058612 - ORSgTEMT01700159 154 0.8983 (2650/2950) 1 Intact Os_TE_628383 Os_TE_628383 Chr12 22058612 22058773 + ORSgTEMT01701816 154 0.8981 (2679/2983) 1 Intact Os_TE_628386 Os_TE_628381 Chr12 22058035 22058036 + RETROSAT4_LTR 13504 0.0643 (181/2815) 0 * Os_TE_628380 Os_TE_628380 Chr12 22058031 22058030 - SZ-35LTR 3853 0.0949 (274/2888) 0 * Os_TE_628381 Os_TE_628375 Chr12 22053706 22053707 + SPMLIKE 10989 0.0027 (8/2929) 0 * * Os_TE_628373 Chr12 22053413 22053414 - SZ-35LTR 3853 0.0594 (176/2964) 0 * Os_TE_628372 Os_TE_628372 Chr12 22053409 22053408 + RETROSAT4_LTR 13504 0.0200 (57/2851) 0 * Os_TE_628373 Os_TE_628363 Chr12 22051381 22051382 + WANDERER 232 0.0810 (237/2926) 0 * * Os_TE_628349 Chr12 22043438 22043439 - COPI2_LTR 4733 0.0041 (12/2918) 0 * * Os_TE_628345 Chr12 22036938 22036939 - SZ-67LTR 1540 0.0327 (98/2995) 0 * * Os_TE_628305 Chr12 22020271 22020272 + MPING 430 0.0050 (15/2994) 0 * Os_TE_628304 Os_TE_628304 Chr12 22020269 22020268 - MPING 430 0.0050 (15/2992) 0 * Os_TE_628305 Os_TE_628302 Chr12 22019838 22019839 + SPMLIKE 10989 0.3178 (942/2964) 0 * * Os_TE_628297 Chr12 22017800 22017801 - COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_628296 Os_TE_628296 Chr12 22017796 22017795 + COPIA2-LTR_OS 6433 0.0003 (1/2986) 0 * Os_TE_628297 Os_TE_628295 Chr12 22017779 22017778 + OsSN3 183 0.0003 (1/2994) 0 * * Os_TE_628289 Chr12 22016682 22016683 - ENSPM6_OS 9815 0.0074 (22/2971) 0 * Os_TE_628288 Os_TE_628288 Chr12 22016680 22016679 + ENSPM5_OS 9581 0.0024 (7/2950) 0 * Os_TE_628289 Os_TE_628278 Chr12 22013206 22013205 + OSMU5 4881 0.0121 (21/1731) 0 * * Os_TE_628276 Chr12 22012243 22012242 + SEVERIN-2 1952 0.0017 (3/1782) 0 * * Os_TE_628275 Chr12 22012221 22012222 - ORSgTETN00200001 10994 0.0952 (169/1776) 0 * Os_TE_628274 Os_TE_628274 Chr12 22012219 22012218 + SPMLIKE 10989 0.1021 (182/1783) 0 * Os_TE_628275 Os_TE_628273 Chr12 22012028 22012029 + SPMLIKE 10989 0.0011 (2/1766) 0 * Os_TE_628272 Os_TE_628272 Chr12 22012026 22012025 - SPMLIKE 10989 0.0017 (3/1766) 0 * Os_TE_628273 Os_TE_628241 Chr12 22000960 22000959 - ORSgTEMT02400246 177 0.0051 (9/1782) 0 * Os_TE_628240 Os_TE_628240 Chr12 22000959 22000960 - TYPEM 227 0.0045 (8/1771) 0 * Os_TE_628241 Os_TE_628232 Chr12 21998049 21998048 + RETROSOR2_LTR 11699 0.2836 (492/1735) 0 * * Os_TE_628231 Chr12 21996749 21996750 + COPIA2-LTR_OS 6433 0.0006 (1/1783) 0 * Os_TE_628230 Os_TE_628230 Chr12 21996745 21996744 - COPIA2-LTR_OS 6433 0.0006 (1/1785) 0 * Os_TE_628231 Os_TE_628225 Chr12 21995631 21995632 + RIREX_LTR 8828 0.0011 (2/1757) 0 * Os_TE_628224 Os_TE_628224 Chr12 21995627 21995626 - RIREX_LTR 8828 0.0017 (3/1754) 0 * Os_TE_628225 Os_TE_628222 Chr12 21994669 21994670 - ORSiTERTOOT00269 10834 0.0059 (9/1525) 0 * * Os_TE_628204 Chr12 21963413 21963414 + COPIA2-LTR_OS 6433 0.0017 (3/1779) 0 * Os_TE_628203 Os_TE_628203 Chr12 21963409 21963408 - COPIA2-LTR_OS 6433 0.0017 (3/1784) 0 * Os_TE_628204 Os_TE_628143 Chr12 21939917 21939916 - COPIA1-LTR_OS 9292 0.0038 (5/1313) 0 * * Os_TE_628118 Chr12 21930079 21930080 + SZ-62LTR 3649 0.0210 (63/2993) 0 * * Os_TE_628108 Chr12 21928175 21928176 - SZ-62LTR 3649 0.0067 (20/2974) 0 * Os_TE_628107 Os_TE_628107 Chr12 21928171 21928170 + SZ-62LTR 3649 0.0064 (19/2976) 0 * Os_TE_628108 Os_TE_628098 Chr12 21925129 21924909 - ORSgTETNOOT00443 231 0.4973 (1486/2988) 1 Intact * Os_TE_628087 Chr12 21921185 21921184 + JOUZHENA 607 0.0253 (69/2729) 0 * * Os_TE_628083 Chr12 21920811 21921050 + ORSgTEMT01601934 207 0.4406 (1168/2651) 1 Intact * Os_TE_628075 Chr12 21917159 21917160 + EnSpm-13_OS 11171 0.0003 (1/2979) 0 * * Os_TE_628050 Chr12 21910252 21910253 + SEVERIN-2 1952 0.0013 (4/2984) 0 * * Os_TE_628044 Chr12 21906862 21906861 - ORSgTEMT01601432 239 0.0080 (24/2993) 0 * * Os_TE_628009 Chr12 21893420 21893421 + COPIA2-LTR_OS 6433 0.0509 (152/2987) 0 * * Os_TE_627998 Chr12 21889278 21889277 + SEVERIN-2 1952 0.0071 (19/2666) 0 * * Os_TE_627993 Chr12 21885606 21885607 - COPI2_LTR 4733 0.0103 (31/2996) 0 * Os_TE_627992 Os_TE_627992 Chr12 21885602 21885601 + COPI2_LTR 4733 0.0107 (32/2996) 0 * Os_TE_627993 Os_TE_627979 Chr12 21877207 21877208 + SEVERIN-2 1952 0.1160 (345/2975) 0 * * Os_TE_627954 Chr12 21871981 21871982 - ORSgTETN00200001 10994 0.0623 (183/2939) 0 * Os_TE_627953 Os_TE_627953 Chr12 21871979 21871978 + SPMLIKE 10989 0.0715 (212/2966) 0 * Os_TE_627954 Os_TE_627921 Chr12 21858844 21858843 - COPIA2-LTR_OS 6433 0.0009 (1/1152) 0 * * Os_TE_627910 Chr12 21853568 21853569 + MDM2 312 0.0139 (41/2951) 0 * Os_TE_627909 Os_TE_627909 Chr12 21853567 21853566 - OSTE21 1271 0.0159 (47/2951) 0 * Os_TE_627910 Os_TE_627889 Chr12 21847926 21847927 - RIREX_LTR 8828 0.0745 (222/2981) 0 * * Os_TE_627870 Chr12 21842847 21835790 + ENSPM5_OS 9581 0.5550 (1625/2928) 1 Intact Os_TE_627864 Os_TE_627864 Chr12 21835790 21842847 - ENSPM6_OS 9815 0.5633 (1673/2970) 1 Intact Os_TE_627870 Os_TE_627861 Chr12 21834819 21834818 - SZ-35LTR 3853 0.4472 (1333/2981) 0 * * Os_TE_627835 Chr12 21823345 21823346 - MuDR2_OS 6770 0.0013 (4/2992) 0 * Os_TE_627834 Os_TE_627834 Chr12 21823337 21823336 + MuDR2_OS 6770 0.0013 (4/2991) 0 * Os_TE_627835 Os_TE_627828 Chr12 21820103 21820102 + CACTA-B 1103 0.0021 (4/1931) 0 * * Os_TE_627824 Chr12 21819141 21819140 + RIREX_LTR 8828 0.0015 (3/1937) 0 * * Os_TE_627822 Chr12 21816851 21810425 - COPIA2-LTR_OS 6433 0.7135 (1372/1923) 1 Intact * Os_TE_627811 Chr12 21808778 21808779 + OSTE9 421 0.0021 (5/2379) 0 * Os_TE_627810 Os_TE_627810 Chr12 21808774 21808773 + OSTE9 421 0.0033 (6/1793) 0 * Os_TE_627811 Os_TE_627809 Chr12 21803604 21803603 - RIRE2_LTR 11306 0.0013 (4/2993) 0 * * Os_TE_627797 Chr12 21799174 21799173 - ORSgTEMT02400246 177 0.0578 (173/2991) 0 * Os_TE_627796 Os_TE_627796 Chr12 21799173 21799174 - TYPEM 227 0.0583 (174/2987) 0 * Os_TE_627797 Os_TE_627795 Chr12 21798545 21798544 + SEVERIN-2 1952 0.0309 (92/2981) 0 * * Os_TE_627788 Chr12 21796156 21796157 + SZ-48LTR 3632 0.0862 (253/2935) 0 * * Os_TE_627783 Chr12 21795715 21795714 - RIREX_LTR 8828 0.4264 (1263/2962) 0 * * Os_TE_627757 Chr12 21785616 21785615 + SEVERIN-2 1952 0.0015 (4/2624) 0 * * Os_TE_627753 Chr12 21784669 21784668 + RIREX_LTR 8828 0.0003 (1/2990) 0 * * Os_TE_627751 Chr12 21784480 21784481 - RETROFIT5_LTR 4785 0.0020 (6/2991) 0 * * Os_TE_627741 Chr12 21773917 21773918 + JOUZHEN 596 0.0007 (2/2963) 0 * Os_TE_627740 Os_TE_627740 Chr12 21773910 21773909 - JOUZHEN 596 0.0007 (2/2952) 0 * Os_TE_627741 Os_TE_627689 Chr12 21753487 21753488 - MuDR4_OS 7610 0.2264 (632/2792) 0 * * Os_TE_627686 Chr12 21752249 21752250 - INDITTO 263 0.0020 (6/2949) 0 * Os_TE_627685 Os_TE_627685 Chr12 21752247 21752246 + INDITTO 263 0.0027 (8/2955) 0 * Os_TE_627686 Os_TE_627672 Chr12 21751291 21751292 - NDNA1TNA_OS 334 0.0799 (234/2927) 0 * * Os_TE_627671 Chr12 21751197 21751196 - ORSiTERTOOT00385 6000 0.0003 (1/2931) 0 * * Os_TE_627609 Chr12 21733017 21733018 - CACTA-H 1152 0.0054 (16/2989) 0 * * Os_TE_627607 Chr12 21732542 21732541 - RIREX_LTR 8828 0.0054 (16/2973) 0 * * Os_TE_627603 Chr12 21731083 21731084 + CACTA-Q 2268 0.3507 (1025/2923) 0 * Os_TE_627602 Os_TE_627602 Chr12 21731081 21731080 - CACTA-Q 2268 0.3518 (1031/2931) 0 * Os_TE_627603 Os_TE_627598 Chr12 21729868 21729867 + TRUNCATOR 2918 0.0020 (6/2971) 0 * * Os_TE_627595 Chr12 21728693 21728694 - RETROSAT4_LTR 13504 0.0787 (234/2972) 0 * * Os_TE_627588 Chr12 21726387 21726388 + RETROSAT4_LTR 13504 0.0094 (28/2983) 0 * Os_TE_627587 Os_TE_627587 Chr12 21726383 21726382 - SZ-35LTR 3853 0.0094 (28/2985) 0 * Os_TE_627588 Os_TE_627584 Chr12 21725218 21725219 + SPMLIKE 10989 0.0067 (20/2967) 0 * Os_TE_627583 Os_TE_627583 Chr12 21725216 21725215 - ORSgTETN00200001 10994 0.0071 (21/2959) 0 * Os_TE_627584 Os_TE_627565 Chr12 21718427 21718426 - RIREX_LTR 8828 0.0159 (36/2258) 0 * * Os_TE_627560 Chr12 21717208 21717209 - ORSgTETN00200001 10994 0.0013 (4/2975) 0 * Os_TE_627559 Os_TE_627559 Chr12 21717206 21717205 + SPMLIKE 10989 0.0014 (4/2961) 0 * Os_TE_627560 Os_TE_627552 Chr12 21715488 21715489 - COPIA2-LTR_OS 6433 0.0024 (7/2969) 0 * Os_TE_627551 Os_TE_627551 Chr12 21715484 21715483 + COPIA2-LTR_OS 6433 0.0024 (7/2951) 0 * Os_TE_627552 Os_TE_627547 Chr12 21714582 21714583 + TRUNCATOR 2918 0.1889 (564/2986) 0 * * Os_TE_627541 Chr12 21709977 21709978 + SPMLIKE 10989 0.0003 (1/2979) 0 * Os_TE_627540 Os_TE_627540 Chr12 21709975 21709974 - ORSgTETN00200001 10994 0.0003 (1/2979) 0 * Os_TE_627541 Os_TE_627525 Chr12 21701729 21701728 - ORSgTETN00200001 10994 0.0041 (12/2956) 0 * * Os_TE_627523 Chr12 21701669 21701289 + TYPEU2 382 0.6049 (1793/2964) 1 Intact * Os_TE_627496 Chr12 21691566 21691567 + ORSgTETNOOT00032 218 0.0007 (2/2902) 0 * * Os_TE_627494 Chr12 21691317 21691316 + Cassandra_OS-LTR 764 0.0118 (31/2619) 0 * * Os_TE_627488 Chr12 21688085 21688084 + ORSgTEMT00600376 329 0.0010 (3/2979) 0 * Os_TE_627487 Os_TE_627487 Chr12 21688060 21688061 + ORSgTEMT00600307 352 0.0010 (3/2975) 0 * Os_TE_627488 Os_TE_627486 Chr12 21687333 21687334 - COPI2_LTR 4733 0.0003 (1/2910) 0 * Os_TE_627485 Os_TE_627485 Chr12 21687329 21687328 + COPI2_LTR 4733 0.0003 (1/2890) 0 * Os_TE_627486 Os_TE_627448 Chr12 21667366 21667367 + SC-8_LTR 4951 0.0003 (1/2911) 0 * Os_TE_627447 Os_TE_627447 Chr12 21667362 21667361 - SC-8_LTR 4951 0.0003 (1/2910) 0 * Os_TE_627448 Os_TE_627428 Chr12 21658720 21658721 - ORSgTETNOOT01420 149 0.0007 (2/2976) 0 * * Os_TE_627409 Chr12 21650043 21650044 - COPIA2-LTR_OS 6433 0.0167 (50/2994) 0 * Os_TE_627408 Os_TE_627408 Chr12 21650039 21650038 + COPIA2-LTR_OS 6433 0.0164 (49/2986) 0 * Os_TE_627409 Os_TE_627406 Chr12 21648591 21648590 + COPIA2-LTR_OS 6433 0.0007 (2/2960) 0 * * Os_TE_627403 Chr12 21646274 21646273 + ORSgTEMT00600583 335 0.0014 (4/2944) 0 * * Os_TE_627372 Chr12 21641410 21641409 + RETROSAT4_LTR 13504 0.0004 (1/2851) 0 * * Os_TE_627370 Chr12 21640165 21640166 + ORSgTEMT00501366 147 0.0013 (4/2990) 0 * * Os_TE_627363 Chr12 21638575 21638576 + COPIA2-LTR_OS 6433 0.0013 (4/2996) 0 * Os_TE_627362 Os_TE_627362 Chr12 21638571 21638570 - COPIA2-LTR_OS 6433 0.0013 (4/2993) 0 * Os_TE_627363 Os_TE_627340 Chr12 21629684 21629685 - ORSiTETNOOT00199 3501 0.0003 (1/2967) 0 * Os_TE_627339 Os_TE_627339 Chr12 21629677 21629676 + TWIFBIG 3567 0.0003 (1/2967) 0 * Os_TE_627340 Os_TE_627337 Chr12 21629008 21629009 - DEBOAT 110 0.0013 (4/2991) 0 * * Os_TE_627321 Chr12 21618939 21618940 - Mudr5_OS 5952 0.0003 (1/2953) 0 * * Os_TE_627307 Chr12 21612742 21612743 + ORSiCMCM00100019 2717 0.0074 (22/2982) 0 * * Os_TE_627292 Chr12 21607835 21607836 - SZ-40LTR 2465 0.0003 (1/2946) 0 * * Os_TE_627218 Chr12 21586268 21586267 + DS-RICE4N 715 0.0152 (45/2965) 0 * * Os_TE_627214 Chr12 21585478 21585479 - RIREX_LTR 8828 0.0003 (1/2945) 0 * Os_TE_627213 Os_TE_627213 Chr12 21585474 21585473 + RIREX_LTR 8828 0.0003 (1/2944) 0 * Os_TE_627214 Os_TE_627174 Chr12 21573246 21574112 + DS-RICE3N 525 0.8580 (1667/1943) 1 Intact * Os_TE_627129 Chr12 21533666 21533667 - SZ-48LTR 3632 0.0014 (3/2148) 0 * * Os_TE_627126 Chr12 21528774 21528775 - TELIA 141 0.0170 (50/2945) 0 * Os_TE_627125 Os_TE_627125 Chr12 21528766 21528765 + TELIA 141 0.0170 (50/2946) 0 * Os_TE_627126 Os_TE_627124 Chr12 21528288 21528289 + RIREX_LTR 8828 0.0003 (1/2951) 0 * Os_TE_627123 Os_TE_627123 Chr12 21528284 21528283 - RIREX_LTR 8828 0.0003 (1/2952) 0 * Os_TE_627124 Os_TE_627122 Chr12 21527949 21527950 - NDNA1TNA_OS 334 0.0616 (181/2940) 0 * Os_TE_627121 Os_TE_627121 Chr12 21527947 21527946 + NDNA1TNA_OS 334 0.0613 (180/2936) 0 * Os_TE_627122 Os_TE_627119 Chr12 21526419 21526420 + COPIA2-LTR_OS 6433 0.0575 (169/2940) 0 * Os_TE_627118 Os_TE_627118 Chr12 21526415 21526414 - COPIA2-LTR_OS 6433 0.0611 (180/2946) 0 * Os_TE_627119 Os_TE_627098 Chr12 21521816 21521817 - TRUNCATOR 2918 0.0073 (21/2886) 0 * * Os_TE_627080 Chr12 21517186 21517187 - RIRE2_LTR 11306 0.0012 (3/2472) 0 * * Os_TE_627074 Chr12 21511179 21511180 + SZ-43LTR 4039 0.0010 (3/2919) 0 * * Os_TE_627067 Chr12 21510723 21510724 - TRUNCATOR 2918 0.0022 (6/2753) 0 * * Os_TE_627065 Chr12 21510371 21510372 - ORSgTEMT00500578 129 0.0015 (4/2749) 0 * * Os_TE_627053 Chr12 21503904 21503905 + COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * * Os_TE_627050 Chr12 21503506 21503505 + ORSiOTOT00000037 220 0.0593 (174/2934) 0 * * Os_TE_627046 Chr12 21501897 21501898 - OLO24 345 0.0011 (3/2835) 0 * * Os_TE_627032 Chr12 21487436 21487437 - HATOS1 3488 0.0014 (4/2927) 0 * * Os_TE_627025 Chr12 21486381 21486380 + ORSgTETNOOT02316 263 0.0004 (1/2819) 0 * * Os_TE_627011 Chr12 21482297 21482298 - MERMITED 1572 0.0014 (4/2911) 0 * Os_TE_627010 Os_TE_627010 Chr12 21482295 21482294 - MERMITED 1572 0.0014 (4/2911) 0 * Os_TE_627011 Os_TE_627001 Chr12 21479607 21479606 - EnSpm-15_OS 8871 0.0158 (47/2970) 0 * * Os_TE_626997 Chr12 21478409 21478410 - ORSgTETN00200001 10994 0.0372 (106/2846) 0 * * Os_TE_626990 Chr12 21476353 21476352 - CACTA-K 1131 0.0093 (27/2911) 0 * * Os_TE_626969 Chr12 21470923 21470924 - COPI2_LTR 4733 0.0010 (3/2966) 0 * Os_TE_626968 Os_TE_626968 Chr12 21470919 21470918 + COPI2_LTR 4733 0.0007 (2/2970) 0 * Os_TE_626969 Os_TE_626961 Chr12 21467876 21467875 + COPI2_LTR 4733 0.0003 (1/2935) 0 * * Os_TE_626960 Chr12 21467639 21467640 + ORSgTEMT04800085 366 0.0115 (34/2949) 0 * Os_TE_626959 Os_TE_626959 Chr12 21467637 21467636 + STOLA 369 0.0100 (29/2914) 0 * Os_TE_626960 Os_TE_626936 Chr12 21460321 21460320 + MERMITEB 1610 0.0133 (39/2934) 0 * * Os_TE_626924 Chr12 21452845 21452846 - KRISPIE 956 0.0003 (1/2925) 0 * * Os_TE_626921 Chr12 21452112 21452111 - ORSgTEMT00700002 381 0.0007 (2/2995) 0 * * Os_TE_626910 Chr12 21449760 21449759 - ENSPM4_OS 11610 0.0079 (23/2919) 0 * * Os_TE_626865 Chr12 21426429 21426428 + ORSgTEMT00101674 340 0.0007 (2/2976) 0 * * Os_TE_626864 Chr12 21426383 21425340 - JOUZHEN 596 0.6442 (1899/2948) 1 Intact Os_TE_626863 Os_TE_626863 Chr12 21425340 21426383 + JOUZHEN 596 0.6400 (1902/2972) 1 Intact Os_TE_626864 Os_TE_626862 Chr12 21425246 21425247 - RIREX_LTR 8828 0.0054 (16/2945) 0 * Os_TE_626861 Os_TE_626861 Chr12 21425242 21425241 + RIREX_LTR 8828 0.0054 (16/2943) 0 * Os_TE_626862 Os_TE_626860 Chr12 21425082 21425083 + NDNA1TNA_OS 334 0.0007 (2/2956) 0 * * Os_TE_626800 Chr12 21336840 21336561 - SUSU 279 0.6260 (1865/2979) 1 Intact Os_TE_626797 Os_TE_626797 Chr12 21336561 21336840 + ORSgTEMT05000092 279 0.6241 (1861/2982) 1 Intact Os_TE_626800 Os_TE_626787 Chr12 21328550 21329990 + DS-RICE4N 715 0.6058 (1681/2775) 1 Intact * Os_TE_626765 Chr12 21308182 21308183 - COPI1_LTR 4721 0.0020 (6/2992) 0 * Os_TE_626764 Os_TE_626764 Chr12 21308178 21308177 + COPI1_LTR 4721 0.0017 (5/2991) 0 * Os_TE_626765 Os_TE_626744 Chr12 21302168 21302169 - COPIA2-LTR_OS 6433 0.0003 (1/2962) 0 * Os_TE_626743 Os_TE_626743 Chr12 21302164 21302163 + COPIA2-LTR_OS 6433 0.0003 (1/2947) 0 * Os_TE_626744 Os_TE_626723 Chr12 21299349 21299350 - RETROSAT2LTR 12796 0.0003 (1/2882) 0 * Os_TE_626722 Os_TE_626722 Chr12 21299347 21299346 + RETROSAT2LTR 12796 0.0003 (1/2884) 0 * Os_TE_626723 Os_TE_626717 Chr12 21297739 21297740 - COPIA1-LTR_OS 9292 0.0020 (6/2976) 0 * Os_TE_626716 Os_TE_626716 Chr12 21297735 21297734 + COPIA1-LTR_OS 9292 0.0017 (5/2884) 0 * Os_TE_626717 Os_TE_626697 Chr12 21288872 21288873 - SZ-48LTR 3632 0.0084 (25/2994) 0 * Os_TE_626696 Os_TE_626696 Chr12 21288868 21288867 + SZ-48LTR 3632 0.0080 (24/2986) 0 * Os_TE_626697 Os_TE_626682 Chr12 21279834 21279709 - SINE16_OS 116 0.7021 (2072/2951) 1 Intact * Os_TE_626592 Chr12 21239211 21239210 - MIDWAY 985 0.0017 (5/2991) 0 * * Os_TE_626560 Chr12 21220065 21220064 - SZ-67LTR 1540 0.0064 (19/2992) 0 * * Os_TE_626546 Chr12 21214142 21214143 - SZ-4_LTR 5991 0.0003 (1/2973) 0 * Os_TE_626545 Os_TE_626545 Chr12 21214138 21214137 + SZ-4_LTR 5991 0.0003 (1/2976) 0 * Os_TE_626546 Os_TE_626539 Chr12 21206272 21206036 - ORSgTEMT00901723 248 0.8657 (2533/2926) 1 Intact Os_TE_626536 Os_TE_626536 Chr12 21206036 21206272 - ORSgTEMT00901041 237 0.8698 (2458/2826) 1 Intact Os_TE_626539 Os_TE_626535 Chr12 21205999 21205998 - ORSgTEMT00901041 237 0.0004 (1/2669) 0 * * Os_TE_626534 Chr12 21205544 21205543 + STOWAWAY51_OS 246 0.0010 (3/2948) 0 * * Os_TE_626511 Chr12 21196187 21195778 + ORSgTEMT00300122 416 0.8621 (2570/2981) 1 Intact * Os_TE_626507 Chr12 21195641 21195642 + ORSiTETN00200006 8216 0.0017 (5/2899) 0 * Os_TE_626506 Os_TE_626506 Chr12 21195639 21195638 - ORSiTETN00200006 8216 0.0021 (6/2849) 0 * Os_TE_626507 Os_TE_626504 Chr12 21194891 21194892 - ORSgTETN00200001 10994 0.0822 (242/2944) 0 * Os_TE_626503 Os_TE_626503 Chr12 21194889 21194888 + SPMLIKE 10989 0.0793 (233/2939) 0 * Os_TE_626504 Os_TE_626497 Chr12 21189820 21189821 + ORSgTEMT01601092 239 0.1833 (428/2335) 0 * * Os_TE_626494 Chr12 21187832 21186658 + MERMITE18C 1473 0.8644 (2587/2993) 1 Intact Os_TE_626493 Os_TE_626493 Chr12 21186657 21187830 - MERMITE18D 1491 0.8632 (2537/2939) 1 Intact Os_TE_626494 Os_TE_626488 Chr12 21186335 21186573 - STOWAWAY44_OS 240 0.8857 (2572/2904) 1 Intact * Os_TE_626485 Chr12 21185563 21185562 + ORSgTEMT01601934 207 0.1516 (427/2817) 0 * Os_TE_626484 Os_TE_626484 Chr12 21185560 21185561 - ORSgTEMT01602292 239 0.1220 (356/2917) 0 * Os_TE_626485 Os_TE_626483 Chr12 21184120 21183977 + ORSgTEMT00500476 150 0.8614 (2542/2951) 1 Intact * Os_TE_626479 Chr12 21182369 21182368 + STOWAWAY43_OS 233 0.1468 (437/2977) 0 * Os_TE_626478 Os_TE_626478 Chr12 21182366 21182367 - TREP219 104 0.1444 (431/2985) 0 * Os_TE_626479 Os_TE_626471 Chr12 21181470 21181621 - STOWAWAY1_OS 149 0.8628 (2573/2982) 1 Intact * Os_TE_626469 Chr12 21180688 21180689 - ORSgTEMT01600578 239 0.0003 (1/2982) 0 * * Os_TE_626467 Chr12 21178217 21178218 - ORSgTEMT00501403 148 0.1402 (418/2981) 0 * * Os_TE_626463 Chr12 21177059 21177058 - LINE-6_OS 4886 0.1411 (418/2962) 0 * * Os_TE_626459 Chr12 21176024 21176025 + RETRO2_LTR 12874 0.2128 (605/2843) 0 * Os_TE_626458 Os_TE_626458 Chr12 21176020 21176019 - RETRO2_LTR 12874 0.2103 (619/2944) 0 * Os_TE_626459 Os_TE_626453 Chr12 21174747 21174748 - TREP215 239 0.0406 (109/2683) 0 * * Os_TE_626440 Chr12 21171161 21171162 - RETROSAT4_LTR 13504 0.2316 (688/2971) 0 * Os_TE_626439 Os_TE_626439 Chr12 21171157 21171156 + RETROSAT4_LTR 13504 0.2135 (625/2927) 0 * Os_TE_626440 Os_TE_626436 Chr12 21169249 21169250 + RIREX_LTR 8828 0.0013 (4/2978) 0 * Os_TE_626435 Os_TE_626435 Chr12 21169245 21169244 - RIREX_LTR 8828 0.0010 (3/2976) 0 * Os_TE_626436 Os_TE_626430 Chr12 21167718 21167719 - SZ-48LTR 3632 0.0003 (1/2993) 0 * * Os_TE_626425 Chr12 21166224 21166223 + Cassandra_OS-LTR 764 0.0021 (6/2921) 0 * * Os_TE_626424 Chr12 21166172 21166173 + SPMLIKE 10989 0.0047 (14/2950) 0 * Os_TE_626423 Os_TE_626423 Chr12 21166170 21166169 - ORSgTETN00200001 10994 0.0041 (12/2956) 0 * Os_TE_626424 Os_TE_626422 Chr12 21165990 21165989 - SEVERIN-2 1952 0.0033 (10/2986) 0 * * Os_TE_626417 Chr12 21161479 21161480 - ORSgTEMT02400179 221 0.0134 (40/2978) 0 * Os_TE_626416 Os_TE_626416 Chr12 21161478 21161477 - TYPEM 227 0.0134 (40/2978) 0 * Os_TE_626417 Os_TE_626415 Chr12 21160809 21160810 - OSLINE1-2 7128 0.0013 (4/2991) 0 * * Os_TE_626407 Chr12 21158747 21158748 - DS-RICE2N 613 0.0013 (4/2993) 0 * Os_TE_626406 Os_TE_626406 Chr12 21158740 21158739 + DS-RICE4N 715 0.0013 (4/2991) 0 * Os_TE_626407 Os_TE_626401 Chr12 21157494 21157495 - RIRE2_LTR 11306 0.0013 (4/2994) 0 * Os_TE_626400 Os_TE_626400 Chr12 21157490 21157489 - ORSgTERT00201216 11284 0.0013 (4/2994) 0 * Os_TE_626401 Os_TE_626398 Chr12 21156627 21156626 - STOWAWAY51_OS 246 0.0013 (1/795) -1 * * Os_TE_626383 Chr12 21151805 21151806 + TWIFBIG 3567 0.0034 (8/2355) 0 * Os_TE_626382 Os_TE_626382 Chr12 21151798 21151797 - ORSiTETNOOT00216 3569 0.0038 (9/2353) 0 * Os_TE_626383 Os_TE_626379 Chr12 21151339 21151340 - RIREX_LTR 8828 0.1210 (286/2363) 0 * Os_TE_626378 Os_TE_626378 Chr12 21151335 21151334 + RIREX_LTR 8828 0.1193 (280/2348) 0 * Os_TE_626379 Os_TE_626376 Chr12 21149762 21149763 - SZ-67LTR 1540 0.0043 (9/2077) 0 * Os_TE_626375 Os_TE_626375 Chr12 21149758 21149757 + ORSiTERT00200145 12238 0.0053 (11/2084) 0 * Os_TE_626376 Os_TE_626374 Chr12 21149468 21149467 + OSMAR1 5265 0.0049 (10/2054) 0 * Os_TE_626373 Os_TE_626373 Chr12 21149465 21149466 - OSMAR1 5265 0.0053 (11/2061) 0 * Os_TE_626374 Os_TE_626372 Chr12 21148061 21148062 - ORSgTEMT01601432 239 0.0029 (6/2105) 0 * * Os_TE_626369 Chr12 21145989 21144853 + CACTA-B 1103 0.8486 (2012/2371) 1 Intact * Os_TE_626367 Chr12 21144734 21144733 - RETROSAT2LTRA 3112 0.0020 (4/2020) 0 * * Os_TE_626365 Chr12 21142090 21143634 - ENSPM4_OS 11610 0.8944 (1864/2084) 1 Intact * Os_TE_626364 Chr12 21142076 21142077 + SPMLIKE 10989 0.0005 (1/2088) 0 * * Os_TE_626354 Chr12 21135529 21135530 - SZ-35LTR 3853 0.5384 (1450/2693) 0 * * Os_TE_626352 Chr12 21135405 21135406 + ORSgTEMT01602181 239 0.0107 (29/2718) 0 * * Os_TE_626332 Chr12 21130308 21130307 + GYPSO_LTR 9828 0.0003 (1/2971) 0 * * Os_TE_626329 Chr12 21129401 21129402 - ORSgTEMT01601696 238 0.0034 (10/2984) 0 * * Os_TE_626328 Chr12 21128566 21128567 + EnSpm-13_OS 11171 0.0003 (1/2997) 0 * Os_TE_626327 Os_TE_626327 Chr12 21128564 21128563 - EnSpm-13_OS 11171 0.0003 (1/2998) 0 * Os_TE_626328 Os_TE_626323 Chr12 21127986 21127987 - ENSPM4_OS 11610 0.2564 (767/2991) 0 * * Os_TE_626322 Chr12 21127647 21127648 + RETROSAT4_LTR 13504 0.0070 (21/2986) 0 * Os_TE_626321 Os_TE_626321 Chr12 21127643 21127642 - RETROSAT4_LTR 13504 0.0074 (22/2988) 0 * Os_TE_626322 Os_TE_626318 Chr12 21126257 21126256 + COPIA2-LTR_OS 6433 0.2163 (644/2978) 0 * * Os_TE_626303 Chr12 21120897 21120896 + RIREX_LTR 8828 0.0244 (73/2988) 0 * * Os_TE_626302 Chr12 21120679 21120680 - RETRO2_LTR 12874 0.0244 (73/2988) 0 * Os_TE_626301 Os_TE_626301 Chr12 21120675 21120674 + RETRO2_LTR 12874 0.0258 (77/2988) 0 * Os_TE_626302 Os_TE_626298 Chr12 21119289 21119288 + SPMLIKE 10989 0.0003 (1/2980) 0 * * Os_TE_626294 Chr12 21117999 21118000 + COPIA2-LTR_OS 6433 0.0010 (3/2992) 0 * * Os_TE_626290 Chr12 21115564 21115565 - MDR2 6967 0.0492 (147/2988) 0 * Os_TE_626289 Os_TE_626289 Chr12 21115560 21115559 - MDR2 6967 0.0498 (149/2990) 0 * Os_TE_626290 Os_TE_626288 Chr12 21115126 21115007 + SINE1R5_OS 121 0.6248 (1685/2697) 1 Intact * Os_TE_626285 Chr12 21112459 21112458 + SZ-9LTR 965 0.0003 (1/2882) 0 * * Os_TE_626277 Chr12 21110203 21105491 - COPI2_LTR 4733 0.0904 (267/2952) 1 Intact Os_TE_626275 Os_TE_626275 Chr12 21105491 21110203 + COPI2_LTR 4733 0.0877 (259/2952) 1 Intact Os_TE_626277 Os_TE_626269 Chr12 21101493 21101494 + ORSiTERTOOT00027 10853 0.0826 (244/2953) 0 * * Os_TE_626267 Chr12 21101342 21101343 + TRUNCATOR2_LTR 2904 0.2014 (595/2954) 0 * Os_TE_626266 Os_TE_626266 Chr12 21101338 21101337 - TRUNCATOR2_LTR 2904 0.2099 (624/2973) 0 * Os_TE_626267 Os_TE_626265 Chr12 21100606 21100605 - TRUNCATOR2_LTR 2904 0.0111 (33/2960) 0 * * Os_TE_626239 Chr12 21085199 21085198 - RETROSAT4_LTR 13504 0.0006 (1/1794) 0 * * Os_TE_626237 Chr12 21084301 21084302 + COPIA2-LTR_OS 6433 0.0006 (1/1815) 0 * * Os_TE_626225 Chr12 21076545 21076544 + CLOUD-6 508 0.0030 (6/1981) 0 * * Os_TE_626219 Chr12 21070395 21070396 + RETROSAT4_LTR 13504 0.0025 (4/1630) 0 * * Os_TE_626209 Chr12 21060515 21060516 - SPMLIKE 10989 0.0017 (3/1771) 0 * * Os_TE_626190 Chr12 21051459 21051460 - RIREX_LTR 8828 0.0036 (10/2763) 0 * * Os_TE_626171 Chr12 21040822 21040823 - MDM2 312 0.0033 (6/1801) 0 * Os_TE_626170 Os_TE_626170 Chr12 21040814 21040813 + MDM2 312 0.0033 (6/1803) 0 * Os_TE_626171 Os_TE_626160 Chr12 21039197 21039341 - TNR2A 152 0.6340 (343/541) 1 Intact * Os_TE_626119 Chr12 21021462 21021461 - RETROSAT4_LTR 13504 0.0006 (1/1796) 0 * * Os_TE_626115 Chr12 21018358 21018357 - SINE03_OS 360 0.0034 (6/1790) 0 * * Os_TE_626114 Chr12 21018247 21018248 + RETROFIT2_LTR 4774 0.0011 (2/1768) 0 * Os_TE_626113 Os_TE_626113 Chr12 21018243 21018242 - RETROFIT2_LTR 4774 0.0011 (2/1769) 0 * Os_TE_626114 Os_TE_626108 Chr12 21014536 21014537 + RETROSAT4_LTR 13504 0.0017 (3/1800) 0 * * Os_TE_626102 Chr12 21012408 21012407 - ORSgTEMT01602082 215 0.0073 (13/1791) 0 * * Os_TE_626095 Chr12 21010146 21010145 - CLOUD 734 0.0017 (3/1770) 0 * * Os_TE_626086 Chr12 21004433 21004434 + RETROSAT4_LTR 13504 0.0010 (2/1981) 0 * * Os_TE_626065 Chr12 20997506 20997234 - COPI2_LTR 4733 0.6483 (341/526) 1 Solo_LTR * Os_TE_626060 Chr12 20995208 20995207 + ORSgTERT00201441 428 0.0029 (1/350) 0 * * Os_TE_626049 Chr12 20981692 20981693 + RETROSAT4_LTR 13504 0.7814 (1183/1514) 0 * * Os_TE_626043 Chr12 20975462 20964567 - ORSgTETN00200001 10994 0.1942 (301/1550) 1 Intact * Os_TE_626028 Chr12 20957967 20958931 + SZ-9LTR 965 0.2125 (337/1586) 1 Intact * Os_TE_626010 Chr12 20951905 20951906 - MuDR4_OS 7610 0.0582 (104/1787) 0 * Os_TE_626009 Os_TE_626009 Chr12 20951898 20951897 - MuDR4_OS 7610 0.0968 (269/2779) 0 * Os_TE_626010 Os_TE_626005 Chr12 20950813 20950814 - ORSgTETN00200001 10994 0.4355 (1213/2785) 0 * * Os_TE_626002 Chr12 20950220 20950221 - RIREX_LTR 8828 0.0011 (3/2799) 0 * Os_TE_626001 Os_TE_626001 Chr12 20950216 20950215 + RIREX_LTR 8828 0.0011 (3/2797) 0 * Os_TE_626002 Os_TE_625997 Chr12 20949451 20948371 + RETRO2A_LTR 12895 0.1198 (332/2772) 1 Solo_LTR * Os_TE_625991 Chr12 20946394 20946393 - ORSgTEMT01602413 239 0.0004 (1/2760) 0 * * Os_TE_625974 Chr12 20939270 20938962 + SINE9_OS 293 0.1220 (334/2737) 1 Intact * Os_TE_625971 Chr12 20938575 20938576 - SZ-9LTR 965 0.0273 (76/2781) 0 * Os_TE_625970 Os_TE_625970 Chr12 20938571 20938570 + SZ-9LTR 965 0.0269 (75/2783) 0 * Os_TE_625971 Os_TE_625965 Chr12 20938006 20938007 + OSTE33 1012 0.0004 (1/2782) 0 * * Os_TE_625961 Chr12 20937461 20937460 - AMYLTP 383 0.0004 (1/2767) 0 * * Os_TE_625947 Chr12 20932518 20932280 + ORSgTEMT01601934 207 0.1158 (324/2798) 1 Intact Os_TE_625946 Os_TE_625946 Chr12 20932280 20932518 - ORSgTEMT01601493 303 0.1112 (309/2779) 1 Intact Os_TE_625947 Os_TE_625933 Chr12 20920796 20920797 + RETROSAT4_LTR 13504 0.0014 (4/2808) 0 * Os_TE_625932 Os_TE_625932 Chr12 20920792 20920791 - SZ-35LTR 3853 0.0014 (4/2805) 0 * Os_TE_625933 Os_TE_625916 Chr12 20913208 20913209 + COPIA2-LTR_OS 6433 0.0164 (19/1161) 0 * Os_TE_625915 Os_TE_625915 Chr12 20913204 20913203 - COPIA2-LTR_OS 6433 0.0175 (19/1086) 0 * Os_TE_625916 Os_TE_625894 Chr12 20904252 20904253 + F770 284 0.5064 (1497/2956) 0 * * Os_TE_625892 Chr12 20904209 20904208 - MERMITE18B 1306 0.0621 (183/2946) 0 * * Os_TE_625891 Chr12 20904086 20904087 - MERMITE18B 1306 0.0651 (194/2978) 0 * Os_TE_625890 Os_TE_625890 Chr12 20904077 20904076 - MERMITE18B 1306 0.0636 (189/2974) 0 * Os_TE_625891 Os_TE_625889 Chr12 20903954 20903953 + ORSgTEMT04600039 283 0.0695 (207/2979) 0 * * Os_TE_625887 Chr12 20902458 20902457 - STOWAWAY50_OS 174 0.0020 (6/2974) 0 * Os_TE_625886 Os_TE_625886 Chr12 20902457 20902458 + ORSgTEMT01700715 134 0.0010 (3/2975) 0 * Os_TE_625887 Os_TE_625884 Chr12 20899654 20899655 + ORSgTETNOOT00908 242 0.8182 (2434/2975) 0 * * Os_TE_625859 Chr12 20892088 20892087 + ORSgTEMT01602181 239 0.0625 (187/2994) 0 * Os_TE_625858 Os_TE_625858 Chr12 20892085 20892086 - ORSgTEMT01602292 239 0.0416 (122/2936) 0 * Os_TE_625859 Os_TE_625857 Chr12 20891735 20891734 - ORSgTEMT02400246 177 0.0654 (196/2995) 0 * Os_TE_625856 Os_TE_625856 Chr12 20891734 20891735 - TYPEM 227 0.0651 (195/2996) 0 * Os_TE_625857 Os_TE_625831 Chr12 20879650 20879651 - SZ-40LTR 2465 0.0009 (2/2345) 0 * * Os_TE_625828 Chr12 20875584 20875583 - RIRE3_LTR 12054 0.0020 (6/2979) 0 * * Os_TE_625826 Chr12 20875241 20873817 - OSTE14 885 0.1015 (303/2986) 1 Intact * Os_TE_625816 Chr12 20869302 20869301 + ORSgTEMT01601591 242 0.0007 (2/2895) 0 * Os_TE_625815 Os_TE_625815 Chr12 20869299 20869300 + ORSgTEMT01601591 242 0.0007 (2/2848) 0 * Os_TE_625816 Os_TE_625797 Chr12 20861021 20861022 + CLOUD-7 495 0.0217 (1/46) -1 * * Os_TE_625758 Chr12 20850149 20850150 + SC-8_LTR 4951 0.0021 (6/2880) 0 * Os_TE_625757 Os_TE_625757 Chr12 20850145 20850144 - SC-8_LTR 4951 0.0017 (5/2881) 0 * Os_TE_625758 Os_TE_625730 Chr12 20829128 20829129 - COPI2_LTR 4733 0.0003 (1/2975) 0 * Os_TE_625729 Os_TE_625729 Chr12 20829124 20829123 + COPI2_LTR 4733 0.0003 (1/2987) 0 * Os_TE_625730 Os_TE_625727 Chr12 20828076 20828077 + ORSgTETNOOT02019 240 0.0583 (165/2832) 0 * Os_TE_625726 Os_TE_625726 Chr12 20828074 20828073 + ORSgTETNOOT00908 242 0.0656 (185/2819) 0 * Os_TE_625727 Os_TE_625724 Chr12 20827427 20827426 - ORSiTETNOOT00107 906 0.0412 (119/2890) 0 * Os_TE_625723 Os_TE_625723 Chr12 20827423 20827424 + ORSiTETNOOT00107 906 0.0403 (117/2906) 0 * Os_TE_625724 Os_TE_625702 Chr12 20822106 20822105 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * * Os_TE_625693 Chr12 20811398 20811399 + ORSiTERTOOT00296 5553 0.0003 (1/2985) 0 * Os_TE_625692 Os_TE_625692 Chr12 20811394 20811393 - SC-3_LTR 5748 0.0003 (1/2986) 0 * Os_TE_625693 Os_TE_625683 Chr12 20803435 20803436 - SC-3_LTR 5748 0.0020 (6/2996) 0 * * Os_TE_625677 Chr12 20800980 20800979 - LINE-6_OS 4886 0.0044 (13/2987) 0 * * Os_TE_625676 Chr12 20799830 20799831 - SZ-62LTR 3649 0.0347 (104/2996) 0 * Os_TE_625675 Os_TE_625675 Chr12 20799826 20799825 + SZ-62LTR 3649 0.0347 (104/2998) 0 * Os_TE_625676 Os_TE_625674 Chr12 20799617 20799618 + SZ-40LTR 2465 0.1322 (392/2965) 0 * Os_TE_625673 Os_TE_625673 Chr12 20799613 20799612 - SZ-40LTR 2465 0.1338 (400/2989) 0 * Os_TE_625674 Os_TE_625668 Chr12 20796819 20796818 - COPI2_LTR 4733 0.0003 (1/2920) 0 * * Os_TE_625667 Chr12 20796654 20796655 - ORSiTERTOOT00368 5673 0.0005 (1/2136) 0 * Os_TE_625666 Os_TE_625666 Chr12 20796650 20796649 + ORSiTERTOOT00368 5673 0.0005 (1/2201) 0 * Os_TE_625667 Os_TE_625664 Chr12 20795388 20795389 + ENSPM4_OS 11610 0.1685 (494/2931) 0 * * Os_TE_625657 Chr12 20793682 20793683 + CACTA-D 1038 0.0339 (101/2979) 0 * * Os_TE_625641 Chr12 20788594 20788593 + MERMITEA 1710 0.0017 (5/2976) 0 * * Os_TE_625631 Chr12 20783769 20783770 - MuDR3_OS 8604 0.5269 (1559/2959) 0 * Os_TE_625630 Os_TE_625630 Chr12 20783761 20783760 - MuDR3_OS 8604 0.5131 (1484/2892) 0 * Os_TE_625631 Os_TE_625622 Chr12 20779272 20779273 - SZ-40LTR 2465 0.0128 (38/2979) 0 * Os_TE_625621 Os_TE_625621 Chr12 20779268 20779267 + GYPSY-A_LTR 8951 0.0124 (37/2984) 0 * Os_TE_625622 Os_TE_625619 Chr12 20777479 20777478 - ENSPM4_OS 11610 0.0343 (102/2974) 0 * * Os_TE_625617 Chr12 20775795 20775796 - RIREX_LTR 8828 0.0044 (13/2964) 0 * * Os_TE_625616 Chr12 20775434 20775435 - ORSiTERTOOT00441 4741 0.1837 (514/2798) 0 * * Os_TE_625614 Chr12 20774042 20774043 + COPIA2-LTR_OS 6433 0.0003 (1/2977) 0 * * Os_TE_625612 Chr12 20773770 20762473 - ORSgTETN00200001 10994 0.1543 (458/2968) 1 Intact Os_TE_625605 Os_TE_625605 Chr12 20762473 20773770 + SPMLIKE 10989 0.1554 (462/2973) 1 Intact Os_TE_625612 Os_TE_625604 Chr12 20762302 20760625 - ENSPM4_OS 11610 0.1616 (483/2988) 1 Intact Os_TE_625603 Os_TE_625603 Chr12 20760624 20762301 + ENSPM4_OS 11610 0.1646 (492/2989) 1 Intact Os_TE_625604 Os_TE_625589 Chr12 20756802 20756801 - SEVERIN-2 1952 0.1817 (537/2955) 0 * * Os_TE_625585 Chr12 20754648 20754647 + ORSgTEMT05000092 279 0.0040 (12/2986) 0 * * Os_TE_625570 Chr12 20746085 20746086 - ORSgTEMT01601432 239 0.6663 (1963/2946) 0 * Os_TE_625569 Os_TE_625569 Chr12 20746084 20746083 + ORSgTEMT01602181 239 0.6570 (1900/2892) 0 * Os_TE_625570 Os_TE_625568 Chr12 20745909 20745910 - COPIA2-LTR_OS 6433 0.0007 (2/2980) 0 * Os_TE_625567 Os_TE_625567 Chr12 20745905 20745904 + COPIA2-LTR_OS 6433 0.0007 (2/2981) 0 * Os_TE_625568 Os_TE_625566 Chr12 20745752 20745751 - ORSgTEMT00900781 213 0.0003 (1/2987) 0 * * Os_TE_625565 Chr12 20745711 20745710 + ORSgTEMT00901844 250 0.6716 (2002/2981) 0 * * Os_TE_625563 Chr12 20745454 20745455 - TYPEM 227 0.0003 (1/2977) 0 * * Os_TE_625560 Chr12 20745062 20745063 - ORSgTERT00201216 11284 0.0034 (10/2946) 0 * * Os_TE_625558 Chr12 20743641 20743642 + GYPSY-B_LTR 7068 0.0037 (6/1607) 0 * Os_TE_625557 Os_TE_625557 Chr12 20743637 20743636 - GYPSY1-LTR_OS 8900 0.0057 (6/1045) 0 * Os_TE_625558 Os_TE_625551 Chr12 20740630 20733680 - MDR2 6967 0.4793 (498/1039) 1 Intact Os_TE_625550 Os_TE_625550 Chr12 20733680 20740630 + MDR2 6967 0.4779 (497/1040) 1 Intact Os_TE_625551 Os_TE_625537 Chr12 20730878 20730879 - RIREX_LTR 8828 0.0003 (1/2905) 0 * Os_TE_625536 Os_TE_625536 Chr12 20730874 20730873 + RIREX_LTR 8828 0.0003 (1/2935) 0 * Os_TE_625537 Os_TE_625535 Chr12 20730826 20730827 - SPMLIKE 10989 0.2138 (553/2586) 0 * Os_TE_625534 Os_TE_625534 Chr12 20730824 20730823 + SPMLIKE 10989 0.2739 (779/2844) 0 * Os_TE_625535 Os_TE_625533 Chr12 20730791 20730792 + Cassandra_OS-LTR 764 0.0014 (4/2761) 0 * * Os_TE_625525 Chr12 20728644 20705659 - ORSgTETN00200001 10994 0.4792 (472/985) 1 Intact * Os_TE_625240 Chr12 20450516 20450515 + RETROSAT4_LTR 13504 0.0057 (12/2118) 0 * * Os_TE_625239 Chr12 20450457 20450456 - OSTE17 734 0.3098 (799/2579) 0 * * Os_TE_625238 Chr12 20450435 20427420 + RIRE2_LTR 11306 0.4371 (417/954) 1 Intact * Os_TE_625208 Chr12 20404988 20404989 - CACTA-H 1152 0.3499 (971/2775) 0 * * Os_TE_625202 Chr12 20400656 20400657 - RIRE3_LTR 12054 0.0005 (1/1908) 0 * * Os_TE_625190 Chr12 20379113 20379114 - ENSPM4_OS 11610 0.0004 (1/2329) 0 * * Os_TE_625188 Chr12 20378890 20378737 - ORSgTEMT01702045 137 0.4396 (1030/2343) 1 Intact Os_TE_625187 Os_TE_625187 Chr12 20378737 20378890 + ORSgTEMT01702111 154 0.4361 (1031/2364) 1 Intact Os_TE_625188 Os_TE_625186 Chr12 20378554 20378555 - ORSgTEMT02400246 177 0.0166 (39/2354) 0 * * Os_TE_625185 Chr12 20378357 20377234 + SPMLIKE 10989 0.4341 (1031/2375) 1 Intact * Os_TE_625158 Chr12 20362158 20365857 + SZ-43LTR 4039 0.8048 (404/502) 1 Intact * Os_TE_624814 Chr12 20192971 20192972 + AMYLTP 383 0.0025 (5/1996) 0 * Os_TE_624813 Os_TE_624813 Chr12 20192963 20192962 - AMYLTP 383 0.0025 (5/1998) 0 * Os_TE_624814 Os_TE_624812 Chr12 20192888 20192889 - ENSPM4_OS 11610 0.2144 (408/1903) 0 * * Os_TE_624705 Chr12 20125521 20125522 + COPI2_LTR 4733 0.0003 (1/2988) 0 * * Os_TE_624679 Chr12 20108154 20108464 - CASTAWAY 364 0.1800 (498/2766) 1 Intact * Os_TE_624654 Chr12 20103918 20103919 + ORSgTEMT00500989 146 0.0020 (6/2993) 0 * * Os_TE_624651 Chr12 20101954 20101955 + RETROSAT2LTR 12796 0.0003 (1/2998) 0 * Os_TE_624650 Os_TE_624650 Chr12 20101952 20101951 - RETROSAT2LTR 12796 0.0003 (1/2998) 0 * Os_TE_624651 Os_TE_624649 Chr12 20100297 20100298 - AMYLTP 383 0.2638 (786/2980) 0 * Os_TE_624648 Os_TE_624648 Chr12 20100289 20100288 + AMYLTP 383 0.2663 (794/2982) 0 * Os_TE_624649 Os_TE_624646 Chr12 20100165 20100164 - BUHUI 375 0.0081 (24/2981) 0 * * Os_TE_624644 Chr12 20100057 20100056 + ORSiTERTOOT00028 8600 0.0307 (91/2968) 0 * * Os_TE_624620 Chr12 20093501 20093502 - STOWAWAY43_OS 233 0.5718 (1661/2905) 0 * * Os_TE_624586 Chr12 20084863 20084864 - SC-3_LTR 5748 0.0003 (1/2991) 0 * * Os_TE_624556 Chr12 20059754 20059755 - ORSgTEMT01601696 238 0.0004 (1/2757) 0 * * Os_TE_624551 Chr12 20058990 20059354 + CASTAWAY 364 0.5941 (1181/1988) 1 Intact * Os_TE_624544 Chr12 20058418 20058419 + ORSgTERT00100619 256 0.2972 (850/2860) 0 * * Os_TE_624543 Chr12 20057896 20057578 + NDNA1TNA_OS 334 0.3907 (1153/2951) 1 Intact Os_TE_624540 Os_TE_624540 Chr12 20057575 20057899 + ORSgTEMT00101674 340 0.3930 (1163/2959) 1 Intact Os_TE_624543 Os_TE_624527 Chr12 20053377 20053378 - ORSgTETN00200001 10994 0.0127 (37/2923) 0 * Os_TE_624526 Os_TE_624526 Chr12 20053375 20053374 + SPMLIKE 10989 0.0105 (30/2861) 0 * Os_TE_624527 Os_TE_624525 Chr12 20053177 20053176 + ORSgTEMT04800085 366 0.6239 (1858/2978) 0 * Os_TE_624524 Os_TE_624524 Chr12 20053174 20053175 - ORSgTEMT04800063 360 0.6208 (1832/2951) 0 * Os_TE_624525 Os_TE_624520 Chr12 20052369 20052370 + STOWAWAY15-2_OS 145 0.6355 (1789/2815) 0 * * Os_TE_624519 Chr12 20052357 20052358 + SETARIA2 1142 0.0394 (115/2917) 0 * * Os_TE_624518 Chr12 20052304 20052303 - UNIQUE 158 0.6148 (1815/2952) 0 * Os_TE_624517 Os_TE_624517 Chr12 20052294 20052295 + TREP220 109 0.6170 (1838/2979) 0 * Os_TE_624518 Os_TE_624494 Chr12 20044195 20044196 + SPMLIKE 10989 0.0003 (1/2953) 0 * * Os_TE_624477 Chr12 20037675 20037674 + ECSR 154 0.0016 (4/2478) 0 * * Os_TE_624468 Chr12 20034381 20034382 + STOWAWAY45_OS 266 0.0007 (2/2993) 0 * * Os_TE_624464 Chr12 20033789 20033788 + GAIJIN 147 0.0007 (2/2973) 0 * * Os_TE_624456 Chr12 20026312 20026313 + ORSgTETNOOT01998 254 0.0013 (4/2988) 0 * * Os_TE_624454 Chr12 20025595 20025596 - STOWAWAY9_OS 235 0.0020 (6/2991) 0 * Os_TE_624453 Os_TE_624453 Chr12 20025594 20025593 + STOWAWAY9_OS 235 0.0020 (6/2988) 0 * Os_TE_624454 Os_TE_624452 Chr12 20025586 20025587 - STOWAWAY9_OS 235 0.0020 (6/2988) 0 * * Os_TE_624451 Chr12 20024919 20024920 - HATOS1 3488 0.8081 (2400/2970) 0 * Os_TE_624450 Os_TE_624450 Chr12 20024912 20024911 - MIDWAY 985 0.8030 (2323/2893) 0 * Os_TE_624451 Os_TE_624428 Chr12 20016578 20016577 + OsSN3 183 0.0031 (9/2921) 0 * * Os_TE_624426 Chr12 20015860 20015859 + ORSgTEMT01601122 212 0.0010 (3/2970) 0 * * Os_TE_624418 Chr12 20014926 20014925 + TRUNCATOR 2918 0.3051 (908/2976) 0 * Os_TE_624417 Os_TE_624417 Chr12 20014901 20014902 - TRUNCATOR 2918 0.2864 (838/2926) 0 * Os_TE_624418 Os_TE_624415 Chr12 20014094 20014095 + ORSgTEMT00501027 149 0.0020 (6/2974) 0 * Os_TE_624414 Os_TE_624414 Chr12 20014093 20014092 - GAIJIN 147 0.0020 (6/2979) 0 * Os_TE_624415 Os_TE_624412 Chr12 20013349 20013350 + COPIA2-LTR_OS 6433 0.0014 (4/2961) 0 * Os_TE_624411 Os_TE_624411 Chr12 20013345 20013344 - COPIA2-LTR_OS 6433 0.0017 (5/2957) 0 * Os_TE_624412 Os_TE_624410 Chr12 20012378 20012377 - ORSgTEMT00501447 126 0.0037 (11/2972) 0 * Os_TE_624409 Os_TE_624409 Chr12 20012376 20012377 + ORSgTEMT00500852 140 0.0034 (10/2972) 0 * Os_TE_624410 Os_TE_624404 Chr12 20011626 20011627 - INDITTO 263 0.0020 (6/2939) 0 * Os_TE_624403 Os_TE_624403 Chr12 20011624 20011623 + INDITTO 263 0.0024 (7/2953) 0 * Os_TE_624404 Os_TE_624402 Chr12 20011592 20011591 + ORSgTEMT01601122 212 0.0014 (4/2951) 0 * * Os_TE_624399 Chr12 20011472 20011471 + RETRO2A_LTR 12895 0.0003 (1/2944) 0 * * Os_TE_624386 Chr12 20010814 20010815 + COPIA2-LTR_OS 6433 0.0003 (1/2980) 0 * Os_TE_624385 Os_TE_624385 Chr12 20010810 20010809 - COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * Os_TE_624386 Os_TE_624350 Chr12 19997264 19997263 + TRUNCATOR 2918 0.0159 (47/2958) 0 * Os_TE_624349 Os_TE_624349 Chr12 19997263 19997264 - TRUNCATOR 2918 0.0138 (41/2969) 0 * Os_TE_624350 Os_TE_624326 Chr12 19988506 19988505 - TEMPINDAS 4259 0.0076 (22/2880) 0 * * Os_TE_624325 Chr12 19985555 19985556 - OSLINE1-2 7128 0.0102 (30/2946) 0 * * Os_TE_624314 Chr12 19983516 19983517 + COPIA2-LTR_OS 6433 0.0013 (4/2970) 0 * Os_TE_624313 Os_TE_624313 Chr12 19983512 19983511 - COPIA2-LTR_OS 6433 0.0020 (6/2969) 0 * Os_TE_624314 Os_TE_624309 Chr12 19982450 19982451 + ORSgTEMT01601367 239 0.0675 (200/2962) 0 * * Os_TE_624282 Chr12 19968867 19968868 - ORSiTETNOOT00035 417 0.0004 (1/2459) 0 * * Os_TE_624277 Chr12 19968407 19968406 + TESSBIG 4057 0.0004 (1/2588) 0 * * Os_TE_624260 Chr12 19961659 19961660 + ORSgTEMT01600486 232 0.0585 (174/2972) 0 * * Os_TE_624253 Chr12 19958933 19958932 + MPING 430 0.0003 (1/2980) 0 * * Os_TE_624245 Chr12 19957385 19957384 + CRM-LTR_OS 7749 0.2342 (698/2980) 0 * * Os_TE_624239 Chr12 19953607 19953608 - MuDR2_OS 6770 0.2175 (635/2919) 0 * Os_TE_624238 Os_TE_624238 Chr12 19953600 19953599 - MuDR2_OS 6770 0.2178 (642/2947) 0 * Os_TE_624239 Os_TE_624237 Chr12 19952051 19952052 - SC-3_LTR 5748 0.0010 (3/2986) 0 * Os_TE_624236 Os_TE_624236 Chr12 19952047 19952046 + ORSiTERTOOT00296 5553 0.0010 (3/2987) 0 * Os_TE_624237 Os_TE_624203 Chr12 19935175 19935176 + COPIA2-LTR_OS 6433 0.0003 (1/2926) 0 * Os_TE_624202 Os_TE_624202 Chr12 19935171 19935170 - COPIA2-LTR_OS 6433 0.0003 (1/2914) 0 * Os_TE_624203 Os_TE_624201 Chr12 19934904 19934903 + TNR8-21 428 0.0017 (5/2984) 0 * * Os_TE_624199 Chr12 19931878 19931877 + ORSgTEMT01601488 239 0.0037 (11/2987) 0 * Os_TE_624198 Os_TE_624198 Chr12 19931875 19931876 - ORSgTEMT01601208 238 0.0040 (12/2993) 0 * Os_TE_624199 Os_TE_624172 Chr12 19914351 19914350 - NDNA1TNA_OS 334 0.0003 (1/2987) 0 * Os_TE_624171 Os_TE_624171 Chr12 19914343 19914344 + NDNA1TNA_OS 334 0.0003 (1/2986) 0 * Os_TE_624172 Os_TE_624156 Chr12 19912976 19912975 - NDNA1TNA_OS 334 0.0017 (5/2987) 0 * * Os_TE_624155 Chr12 19912834 19912833 - STOWAWAY51_OS 246 0.0020 (6/2975) 0 * Os_TE_624154 Os_TE_624154 Chr12 19912828 19912829 + STOWAWAY51_OS 246 0.0017 (5/2957) 0 * Os_TE_624155 Os_TE_624083 Chr12 19892418 19892417 - ORSgTEMT01601432 239 0.0015 (3/1954) 0 * * Os_TE_624080 Chr12 19891576 19891577 + SEVERIN-2 1952 0.0345 (75/2171) 0 * * Os_TE_624077 Chr12 19890458 19890457 - RETROSAT4_LTR 13504 0.0028 (6/2146) 0 * * Os_TE_624073 Chr12 19886648 19886649 + STOWAWAY17_OS 259 0.1072 (172/1604) 0 * Os_TE_624072 Os_TE_624072 Chr12 19886643 19886642 + STOWAWAY17_OS 259 0.2964 (597/2014) 0 * Os_TE_624073 Os_TE_624062 Chr12 19883250 19883251 + RETROSAT4_LTR 13504 0.0028 (4/1442) 0 * Os_TE_624061 Os_TE_624061 Chr12 19883246 19883245 - SZ-35LTR 3853 0.0185 (27/1462) 0 * Os_TE_624062 Os_TE_624038 Chr12 19871906 19871905 - TYPEM 227 0.0017 (4/2394) 0 * Os_TE_624037 Os_TE_624037 Chr12 19871905 19871906 - ORSgTEMT02400246 177 0.0017 (4/2393) 0 * Os_TE_624038 Os_TE_624032 Chr12 19869684 19869683 + ORSgTEMT00900266 245 0.0027 (8/2982) 0 * Os_TE_624031 Os_TE_624031 Chr12 19869683 19869684 + ORSgTEMT00901862 245 0.0027 (8/2984) 0 * Os_TE_624032 Os_TE_624028 Chr12 19868318 19868317 - ORSgTEMT01702346 154 0.0024 (7/2932) 0 * Os_TE_624027 Os_TE_624027 Chr12 19868315 19868316 + ORSgTEMT01702111 154 0.0027 (8/2956) 0 * Os_TE_624028 Os_TE_624025 Chr12 19868212 19868211 + SPMLIKE 10989 0.1328 (312/2350) 0 * * Os_TE_624009 Chr12 19863582 19863583 - UNIQUE 158 0.0021 (6/2811) 0 * * Os_TE_624006 Chr12 19859499 19859498 - CACTA-I 1124 0.5174 (1203/2325) 0 * * Os_TE_624001 Chr12 19858846 19858847 + SPMLIKE 10989 0.0027 (8/2911) 0 * * Os_TE_623948 Chr12 19841312 19841313 + RETROSAT4_LTR 13504 0.2177 (651/2990) 0 * Os_TE_623947 Os_TE_623947 Chr12 19841308 19841307 - SZ-35LTR 3853 0.2219 (664/2993) 0 * Os_TE_623948 Os_TE_623945 Chr12 19840366 19840365 - NDNA1TNA_OS 334 0.0010 (3/2995) 0 * * Os_TE_623944 Chr12 19839470 19839469 - SEVERIN-2 1952 0.0017 (5/2967) 0 * * Os_TE_623943 Chr12 19839079 19839078 - ORSgTEMT01601696 238 0.0017 (5/2891) 0 * Os_TE_623942 Os_TE_623942 Chr12 19839076 19839077 + ORSgTEMT01601983 238 0.0021 (6/2902) 0 * Os_TE_623943 Os_TE_623941 Chr12 19838729 19838728 - ORSgTEMT01400019 216 0.0017 (5/2957) 0 * Os_TE_623940 Os_TE_623940 Chr12 19838724 19838725 + ORSgTEMT01400031 216 0.0020 (6/2971) 0 * Os_TE_623941 Os_TE_623938 Chr12 19833627 19833628 + ORSiTERTOOT00296 5553 0.0003 (1/2953) 0 * Os_TE_623937 Os_TE_623937 Chr12 19833623 19833622 - SC-3_LTR 5748 0.0003 (1/2955) 0 * Os_TE_623938 Os_TE_623936 Chr12 19833434 19833433 - RETROSAT2LTRA 3112 0.0003 (1/2949) 0 * * Os_TE_623892 Chr12 19813297 19813296 - RIRE5-LTR_OS 6427 0.0008 (2/2555) 0 * * Os_TE_623844 Chr12 19796786 19796787 - MuDR4_OS 7610 0.0003 (1/2948) 0 * Os_TE_623843 Os_TE_623843 Chr12 19796779 19796778 - MuDR4_OS 7610 0.0003 (1/2955) 0 * Os_TE_623844 Os_TE_623820 Chr12 19785203 19785202 + ENSPM4_OS 11610 0.0013 (4/2977) 0 * * Os_TE_623818 Chr12 19782737 19782738 - CLOUD 734 0.3614 (1074/2972) 0 * Os_TE_623817 Os_TE_623817 Chr12 19782729 19782728 - CLOUD 734 0.3618 (1076/2974) 0 * Os_TE_623818 Os_TE_623811 Chr12 19778283 19763389 + SPMLIKE 10989 0.2883 (842/2921) 1 Intact Os_TE_623803 Os_TE_623803 Chr12 19763389 19778283 - ORSgTETN00200001 10994 0.2734 (787/2879) 1 Intact Os_TE_623811 Os_TE_623797 Chr12 19762251 19762252 + ORSiTERTOOT00028 8600 0.0015 (4/2720) 0 * Os_TE_623796 Os_TE_623796 Chr12 19762247 19762246 - TRUNCATOR2_LTR 2904 0.0105 (8/765) 0 * Os_TE_623797 Os_TE_623783 Chr12 19759244 19759243 + MERMITEA 1710 0.0247 (69/2791) 0 * * Os_TE_623782 Chr12 19759242 19759243 + MERMITEA 1710 0.0254 (70/2755) 0 * Os_TE_623781 Os_TE_623781 Chr12 19759234 19759233 + MERMITEA 1710 0.0251 (70/2793) 0 * Os_TE_623782 Os_TE_623750 Chr12 19745933 19745934 - SZ-6LTR 5035 0.1141 (214/1875) 0 * * Os_TE_623733 Chr12 19729897 19729896 - ORSgTEMT01602413 239 0.0023 (7/2988) 0 * * Os_TE_623704 Chr12 19715638 19715637 + ORSgTEMT00901405 217 0.5139 (1535/2987) 0 * * Os_TE_623685 Chr12 19711476 19711477 - RETRO2_LTR 12874 0.0325 (96/2953) 0 * Os_TE_623684 Os_TE_623684 Chr12 19711472 19711471 + ORSgTERTOOT00009 12852 0.0326 (96/2947) 0 * Os_TE_623685 Os_TE_623683 Chr12 19711270 19711271 + TNR2A 152 0.4907 (1419/2892) 0 * * Os_TE_623677 Chr12 19709941 19709942 - ORSiTERTOOT00382 5890 0.1386 (408/2944) 0 * Os_TE_623676 Os_TE_623676 Chr12 19709937 19709936 + ORSiTERTOOT00382 5890 0.1328 (389/2930) 0 * Os_TE_623677 Os_TE_623675 Chr12 19709506 19709507 - SC-3_LTR 5748 0.0007 (2/2996) 0 * Os_TE_623674 Os_TE_623674 Chr12 19709502 19709501 + ORSiTERTOOT00296 5553 0.0003 (1/2999) 0 * Os_TE_623675 Os_TE_623654 Chr12 19698432 19698431 + RPO_OS 1983 0.0068 (20/2948) 0 * Os_TE_623653 Os_TE_623653 Chr12 19698431 19698432 - RPO_OS 1983 0.0068 (20/2946) 0 * Os_TE_623654 Os_TE_623646 Chr12 19696469 19696468 + NDNA1TNA_OS 334 0.0344 (44/1280) 0 * Os_TE_623645 Os_TE_623645 Chr12 19696465 19696466 - ORSgTEMT01701481 144 0.5938 (1748/2944) 0 * Os_TE_623646 Os_TE_623644 Chr12 19696439 19696440 - NDNA1TNA_OS 334 0.0134 (40/2986) 0 * * Os_TE_623619 Chr12 19683704 19683705 - SC-3_LTR 5748 0.0003 (1/2981) 0 * Os_TE_623618 Os_TE_623618 Chr12 19683700 19683699 + ORSiTERTOOT00296 5553 0.0007 (2/2980) 0 * Os_TE_623619 Os_TE_623614 Chr12 19679769 19679770 + ORSiTERTOOT00296 5553 0.0314 (94/2998) 0 * * Os_TE_623592 Chr12 19674165 19674164 - ORSiTETNOOT00134 607 0.0015 (4/2706) 0 * * Os_TE_623581 Chr12 19665909 19665910 - SC-3_LTR 5748 0.0010 (3/2994) 0 * * Os_TE_623563 Chr12 19663371 19663370 - ORSgTETNOOT02000 263 0.0207 (62/2992) 0 * * Os_TE_623549 Chr12 19660740 19660741 - AMYLTP 383 0.0200 (46/2304) 0 * * Os_TE_623489 Chr12 19629946 19629945 + SPMLIKE 10989 0.0003 (1/2898) 0 * * Os_TE_623485 Chr12 19627863 19627235 + DS-RICE4N 715 0.3657 (930/2543) 1 Intact * Os_TE_623471 Chr12 19622961 19622962 + NDNA1TNA_OS 334 0.0648 (188/2902) 0 * Os_TE_623470 Os_TE_623470 Chr12 19622959 19622958 - NDNA1TNA_OS 334 0.0642 (186/2899) 0 * Os_TE_623471 Os_TE_623463 Chr12 19617637 19617638 - RETROSAT2LTR 12796 0.0198 (57/2883) 0 * * Os_TE_623443 Chr12 19600985 19600986 - SC-8_LTR 4951 0.0003 (1/2918) 0 * Os_TE_623442 Os_TE_623442 Chr12 19600981 19600980 + SC-8_LTR 4951 0.0003 (1/2917) 0 * Os_TE_623443 Os_TE_623437 Chr12 19599667 19599666 - F524 291 0.0011 (3/2809) 0 * * Os_TE_623435 Chr12 19596997 19596996 + MuDR2_OS 6770 0.0011 (3/2772) 0 * * Os_TE_623425 Chr12 19591284 19591285 + COPIA2-LTR_OS 6433 0.0008 (1/1326) 0 * Os_TE_623424 Os_TE_623424 Chr12 19591280 19591279 - COPIA2-LTR_OS 6433 0.0008 (1/1329) 0 * Os_TE_623425 Os_TE_623423 Chr12 19591227 19591226 + ORSgTEMT01602181 239 0.1198 (159/1327) 0 * Os_TE_623422 Os_TE_623422 Chr12 19591224 19591225 - ORSgTEMT01601432 239 0.1152 (152/1319) 0 * Os_TE_623423 Os_TE_623412 Chr12 19589593 19589592 + ORSgTETNOOT00908 242 0.0575 (74/1287) 0 * * Os_TE_623411 Chr12 19588995 19588996 + ORSiCMCM00100019 2717 0.0424 (56/1320) 0 * Os_TE_623410 Os_TE_623410 Chr12 19588991 19588990 - TRUNCATOR2_LTR 2904 0.0437 (58/1327) 0 * Os_TE_623411 Os_TE_623389 Chr12 19586239 19586240 - SZ-22_LTR 4403 0.0007 (2/2818) 0 * Os_TE_623388 Os_TE_623388 Chr12 19586235 19586234 + ORSiTERTOOT00034 791 0.0007 (2/2801) 0 * Os_TE_623389 Os_TE_623353 Chr12 19580986 19580987 - ENSPM5_OS 9581 0.0286 (77/2697) 0 * * Os_TE_623350 Chr12 19580807 19580808 + RIREX_LTR 8828 0.0011 (3/2666) 0 * Os_TE_623349 Os_TE_623349 Chr12 19580803 19580802 - RIREX_LTR 8828 0.0011 (3/2645) 0 * Os_TE_623350 Os_TE_623346 Chr12 19578360 19578359 - MICROPON-LIKE-1 428 0.0018 (5/2750) 0 * * Os_TE_623345 Chr12 19578293 19578292 - ORSgTEMT01601696 238 0.0026 (2/756) 0 * * Os_TE_623343 Chr12 19576512 19576511 - TRUNCATOR 2918 0.0099 (28/2819) 0 * Os_TE_623342 Os_TE_623342 Chr12 19576511 19576512 + TRUNCATOR 2918 0.0099 (28/2816) 0 * Os_TE_623343 Os_TE_623312 Chr12 19565047 19565048 + COPI2_LTR 4733 0.0004 (1/2844) 0 * * Os_TE_623311 Chr12 19565029 19565030 - RIREX_LTR 8828 0.0018 (5/2794) 0 * Os_TE_623310 Os_TE_623310 Chr12 19565025 19565024 + RIREX_LTR 8828 0.0018 (5/2843) 0 * Os_TE_623311 Os_TE_623307 Chr12 19564722 19564723 + NDNA1TNA_OS 334 0.0004 (1/2848) 0 * * Os_TE_623262 Chr12 19549559 19549560 + STOWAWAY1_OS 149 0.0021 (6/2913) 0 * Os_TE_623261 Os_TE_623261 Chr12 19549558 19549557 - STOWAWAY1_OS 149 0.0014 (4/2905) 0 * Os_TE_623262 Os_TE_623260 Chr12 19549455 19549456 + AMYLTP 383 0.0010 (3/2920) 0 * Os_TE_623259 Os_TE_623259 Chr12 19549447 19549446 - AMYLTP 383 0.0010 (3/2976) 0 * Os_TE_623260 Os_TE_623253 Chr12 19546733 19546734 - RIRE2_LTR 11306 0.0003 (1/2992) 0 * Os_TE_623252 Os_TE_623252 Chr12 19546729 19546728 + RIRE2_LTR 11306 0.0003 (1/2989) 0 * Os_TE_623253 Os_TE_623245 Chr12 19544405 19544406 + SEVERIN-2 1952 0.1673 (491/2935) 0 * * Os_TE_623243 Chr12 19543741 19543740 - TYPEM 227 0.0222 (66/2979) 0 * Os_TE_623242 Os_TE_623242 Chr12 19543740 19543741 - ORSgTEMT02400246 177 0.0215 (64/2970) 0 * Os_TE_623243 Os_TE_623236 Chr12 19542032 19542033 + STOWAWAY47_OS 148 0.0018 (5/2803) 0 * * Os_TE_623216 Chr12 19534866 19534867 + TWIF 586 0.0348 (102/2928) 0 * Os_TE_623215 Os_TE_623215 Chr12 19534859 19534858 - ORSiTETNOOT00200 3563 0.0379 (112/2952) 0 * Os_TE_623216 Os_TE_623211 Chr12 19530242 19530243 + DS-RICE2N 613 0.0010 (3/2995) 0 * Os_TE_623210 Os_TE_623210 Chr12 19530235 19530234 - DS-RICE2N 613 0.0010 (3/2997) 0 * Os_TE_623211 Os_TE_623209 Chr12 19529241 19527799 - DS-RICE2N 613 0.3050 (911/2987) 1 Intact Os_TE_623208 Os_TE_623208 Chr12 19527799 19529241 + DS-RICE4N 715 0.3003 (895/2980) 1 Intact Os_TE_623209 Os_TE_623198 Chr12 19525728 19525727 + ORSgTETNOOT01668 244 0.0246 (73/2968) 0 * * Os_TE_623195 Chr12 19523615 19523371 + STOWAWAY51_OS 246 0.3017 (895/2967) 1 Intact Os_TE_623194 Os_TE_623194 Chr12 19523371 19523612 - STOWAWAY51_OS 246 0.3009 (893/2968) 1 Intact Os_TE_623195 Os_TE_623161 Chr12 19503683 19503684 + DS-RICE2N 613 0.3492 (1043/2987) 0 * Os_TE_623160 Os_TE_623160 Chr12 19503676 19503675 - DS-RICE2N 613 0.3417 (1018/2979) 0 * Os_TE_623161 Os_TE_623155 Chr12 19498404 19498405 - COPIA2-LTR_OS 6433 0.0003 (1/2962) 0 * Os_TE_623154 Os_TE_623154 Chr12 19498400 19498399 + COPIA2-LTR_OS 6433 0.0003 (1/2972) 0 * Os_TE_623155 Os_TE_623149 Chr12 19493984 19493985 + ORSiTERTOOT00296 5553 0.0003 (1/2997) 0 * Os_TE_623148 Os_TE_623148 Chr12 19493980 19493979 - SC-3_LTR 5748 0.0003 (1/2996) 0 * Os_TE_623149 Os_TE_623117 Chr12 19479352 19479353 - COPIA2-LTR_OS 6433 0.0003 (1/2981) 0 * * Os_TE_623077 Chr12 19459141 19459142 - SZ-67LTR 1540 0.0007 (2/2997) 0 * Os_TE_623076 Os_TE_623076 Chr12 19459137 19459136 + SZ-67LTR 1540 0.0007 (2/2998) 0 * Os_TE_623077 Os_TE_623067 Chr12 19457562 19457563 - ORSgTEMT02400246 177 0.0104 (29/2793) 0 * * Os_TE_623000 Chr12 19416087 19416086 - F524 291 0.0010 (3/2914) 0 * * Os_TE_622999 Chr12 19415922 19415923 - F524 291 0.0014 (4/2947) 0 * * Os_TE_622994 Chr12 19414292 19414293 - CPSC4A_LTR 5182 0.0030 (9/2985) 0 * * Os_TE_622988 Chr12 19413069 19413070 + ORSgTEMT00900210 205 0.0010 (3/2995) 0 * * Os_TE_622987 Chr12 19412571 19412572 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_622986 Os_TE_622986 Chr12 19412567 19412566 + COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_622987 Os_TE_622978 Chr12 19408652 19408651 - OSHOOTER 11544 0.0057 (17/2992) 0 * * Os_TE_622976 Chr12 19408642 19408641 + RETROSAT4_LTR 13504 0.0007 (2/2970) 0 * * Os_TE_622961 Chr12 19397211 19397212 + SPMLIKE 10989 0.0603 (165/2738) 0 * * Os_TE_622942 Chr12 19389665 19389666 + RPO_OS 1983 0.0728 (196/2693) 0 * * Os_TE_622934 Chr12 19380214 19380215 - ORSgTETN00200001 10994 0.5134 (1171/2281) 0 * * Os_TE_622929 Chr12 19377688 19377451 + ORSgTEMT01602051 240 0.3539 (1034/2922) 1 Intact Os_TE_622928 Os_TE_622928 Chr12 19377451 19377688 - TREP215 239 0.4379 (1036/2366) 1 Intact Os_TE_622929 Os_TE_622926 Chr12 19377041 19377042 - ORSgTETN00200001 10994 0.0744 (180/2420) 0 * * Os_TE_622916 Chr12 19369008 19369007 - ORSgTEMT04600010 284 0.1107 (308/2783) 0 * * Os_TE_622896 Chr12 19355105 19355106 - ORSiTEMT01300001 950 0.0017 (4/2404) 0 * * Os_TE_622882 Chr12 19350086 19350087 - RIREX_LTR 8828 0.0003 (1/2950) 0 * Os_TE_622881 Os_TE_622881 Chr12 19350082 19350081 + RIREX_LTR 8828 0.0003 (1/2969) 0 * Os_TE_622882 Os_TE_622866 Chr12 19344274 19343272 - CACTA-M 1129 0.4192 (1038/2476) 1 Intact * Os_TE_622862 Chr12 19342679 19342678 + ORSgTETNOOT00908 242 0.0003 (1/2975) 0 * * Os_TE_622848 Chr12 19338239 19338240 - ORSgTEMT01600223 220 0.0009 (1/1147) 0 * * Os_TE_622846 Chr12 19338080 19337930 - STOWAWAY46_OS 154 0.8344 (2434/2917) 1 Intact Os_TE_622845 Os_TE_622845 Chr12 19337932 19338078 + STOWAWAY15-2_OS 145 0.8334 (2416/2899) 1 Intact Os_TE_622846 Os_TE_622840 Chr12 19336738 19336938 - STOWAWAY46_OS 154 0.8369 (2458/2937) 1 Intact * Os_TE_622837 Chr12 19335875 19335876 + SPMLIKE 10989 0.0057 (16/2795) 0 * Os_TE_622836 Os_TE_622836 Chr12 19335873 19335872 - ORSgTETN00200001 10994 0.0052 (15/2909) 0 * Os_TE_622837 Os_TE_622834 Chr12 19335077 19334819 - STOWAWAY34_OS 256 0.8420 (2446/2905) 1 Intact * Os_TE_622826 Chr12 19334362 19334361 - SZ-35LTR 3853 0.0231 (65/2815) 0 * * Os_TE_622821 Chr12 19332865 19332864 - RIREX_LTR 8828 0.0145 (43/2971) 0 * * Os_TE_622817 Chr12 19331130 19331131 + COPI2_LTR 4733 0.0009 (2/2302) 0 * * Os_TE_622807 Chr12 19319724 19319725 - AMYLTP 383 0.0444 (127/2861) 0 * Os_TE_622806 Os_TE_622806 Chr12 19319716 19319715 - AMYLTP 383 0.0437 (124/2837) 0 * Os_TE_622807 Os_TE_622799 Chr12 19318061 19318062 + ORSgTEMT00500035 140 0.0066 (19/2870) 0 * Os_TE_622798 Os_TE_622798 Chr12 19318059 19318058 + ORSgTEMT00500201 140 0.0070 (20/2871) 0 * Os_TE_622799 Os_TE_622797 Chr12 19316883 19316882 + ORSgTEMT00700017 386 0.0074 (21/2840) 0 * * Os_TE_622792 Chr12 19314975 19314974 - EnSpm-13_OS 11171 0.0174 (50/2867) 0 * Os_TE_622791 Os_TE_622791 Chr12 19314973 19314974 + EnSpm-13_OS 11171 0.0164 (47/2866) 0 * Os_TE_622792 Os_TE_622787 Chr12 19313349 19313348 - SEVERIN-2 1952 0.0009 (2/2222) 0 * * Os_TE_622767 Chr12 19307178 19307179 + RETROSAT4_LTR 13504 0.0085 (11/1299) 0 * Os_TE_622766 Os_TE_622766 Chr12 19307174 19307173 - SZ-35LTR 3853 0.0263 (37/1409) 0 * Os_TE_622767 Os_TE_622765 Chr12 19306913 19306912 + ORSiCMCM00100017 5674 0.0085 (2/236) -1 * * Os_TE_622749 Chr12 19303993 19304525 - ORSgTEMT00500026 147 0.7796 (2218/2845) 1 Intact * Os_TE_622739 Chr12 19301631 19301632 - STOWAWAY1_OS 149 0.0010 (3/2869) 0 * Os_TE_622738 Os_TE_622738 Chr12 19301630 19301629 - STOWAWAY1_OS 149 0.0010 (3/2869) 0 * Os_TE_622739 Os_TE_622733 Chr12 19296501 19296500 + ORSgTEMT01601122 212 0.0009 (2/2185) 0 * Os_TE_622732 Os_TE_622732 Chr12 19296498 19296499 + ORSgTEMT01601122 212 0.0012 (3/2515) 0 * Os_TE_622733 Os_TE_622672 Chr12 19260907 19260908 - RETRO2_LTR 12874 0.0014 (4/2860) 0 * Os_TE_622671 Os_TE_622671 Chr12 19260903 19260902 + RETRO2_LTR 12874 0.0014 (4/2854) 0 * Os_TE_622672 Os_TE_622670 Chr12 19259477 19259476 + SPMLIKE 10989 0.0007 (2/2881) 0 * * Os_TE_622665 Chr12 19257451 19257452 + ORSgTEMT01601571 232 0.6513 (1832/2813) 0 * Os_TE_622664 Os_TE_622664 Chr12 19257447 19257446 + ORSgTEMT01602119 229 0.6556 (1860/2837) 0 * Os_TE_622665 Os_TE_622663 Chr12 19257444 19257445 - ORSgTEMT01602413 239 0.6503 (1832/2817) 0 * * Os_TE_622656 Chr12 19255285 19255286 - SZ-5LTR 1223 0.0014 (2/1454) 0 * Os_TE_622655 Os_TE_622655 Chr12 19255281 19255280 + COPIA1-LTR_OS 9292 0.0009 (2/2236) 0 * Os_TE_622656 Os_TE_622651 Chr12 19253404 19253403 - ORSgTEMT01602100 238 0.0079 (22/2788) 0 * Os_TE_622650 Os_TE_622650 Chr12 19253401 19253402 - ORSgTEMT01602413 239 0.0073 (21/2858) 0 * Os_TE_622651 Os_TE_622632 Chr12 19250920 19250919 + NDNA1TNA_OS 334 0.0438 (124/2832) 0 * * Os_TE_622630 Chr12 19250693 19250694 - EnSpm-16_OS 13336 0.0014 (4/2848) 0 * * Os_TE_622613 Chr12 19242478 19242479 + TNR2A 152 0.0021 (6/2846) 0 * Os_TE_622612 Os_TE_622612 Chr12 19242462 19242461 - TNR2A 152 0.0021 (6/2852) 0 * Os_TE_622613 Os_TE_622611 Chr12 19241320 19241321 + SZ-62LTR 3649 0.0053 (6/1128) 0 * * Os_TE_622606 Chr12 19239319 19239320 + ORSgTEMT00100428 339 0.0074 (21/2850) 0 * * Os_TE_622604 Chr12 19239172 19239173 - ORSgTETNOOT01930 140 0.2595 (381/1468) 0 * Os_TE_622603 Os_TE_622603 Chr12 19239170 19239169 + ORSgTETNOOT01930 140 0.5941 (1560/2626) 0 * Os_TE_622604 Os_TE_622594 Chr12 19237878 19237879 + ORSgTEMT00500419 153 0.0041 (5/1210) 0 * * Os_TE_622589 Chr12 19232908 19232909 + LTR10_OS 202 0.1051 (130/1237) 0 * Os_TE_622588 Os_TE_622588 Chr12 19232904 19232903 - LTR10_OS 202 0.1056 (131/1241) 0 * Os_TE_622589 Os_TE_622585 Chr12 19231460 19231461 - ENSPM3_OS 10837 0.0009 (1/1158) 0 * Os_TE_622584 Os_TE_622584 Chr12 19231452 19231451 + ENSPM3_OS 10837 0.0009 (1/1159) 0 * Os_TE_622585 Os_TE_622577 Chr12 19230148 19230147 - SZ-37_LTR 12001 0.0041 (5/1224) 0 * * Os_TE_622560 Chr12 19224112 19220121 - SZ-67LTR 1540 0.8300 (962/1159) 1 Intact Os_TE_622558 Os_TE_622558 Chr12 19220121 19224112 + SZ-67LTR 1540 0.8184 (951/1162) 1 Intact Os_TE_622560 Os_TE_622552 Chr12 19217965 19217964 + ORSgTEMT01602188 240 0.0041 (5/1221) 0 * Os_TE_622551 Os_TE_622551 Chr12 19217962 19217963 - ORSgTEMT01602467 227 0.0041 (5/1224) 0 * Os_TE_622552 Os_TE_622542 Chr12 19209501 19209502 + ORSiTETNOOT00107 906 0.0057 (17/2993) 0 * * Os_TE_622540 Chr12 19209123 19209122 + SZ-28LTR 262 0.6130 (1828/2982) 0 * * Os_TE_622522 Chr12 19200636 19200637 - SC-8_LTR 4951 0.0040 (12/2999) 0 * Os_TE_622521 Os_TE_622521 Chr12 19200632 19200631 + SC-8_LTR 4951 0.0040 (12/2999) 0 * Os_TE_622522 Os_TE_622520 Chr12 19199108 19199109 - MuDR3_OS 8604 0.0075 (22/2946) 0 * Os_TE_622519 Os_TE_622519 Chr12 19199100 19199099 + MuDR3_OS 8604 0.0082 (24/2924) 0 * Os_TE_622520 Os_TE_622518 Chr12 19198948 19198947 + MERMITEB 1610 0.0017 (5/2962) 0 * * Os_TE_622517 Chr12 19198846 19198845 - ORSgTEMT01701314 140 0.0003 (1/2931) 0 * * Os_TE_622506 Chr12 19196057 19196056 + RETROFIT4_LTR 4809 0.1404 (107/762) 0 * * Os_TE_622498 Chr12 19194109 19194108 + ORSgTEMT01700833 150 0.0004 (1/2802) 0 * * Os_TE_622494 Chr12 19191583 19191582 + ORSgTEMT00700017 386 0.0007 (2/2961) 0 * Os_TE_622493 Os_TE_622493 Chr12 19191574 19191575 + ORSgTEMT00700017 386 0.0003 (1/2972) 0 * Os_TE_622494 Os_TE_622476 Chr12 19187569 19187568 + ORSgTEMT01701056 154 0.0017 (5/2934) 0 * Os_TE_622475 Os_TE_622475 Chr12 19187566 19187567 - ORSgTEMT01700216 124 0.0017 (5/2938) 0 * Os_TE_622476 Os_TE_622466 Chr12 19186890 19186891 + TRUNCATOR 2918 0.0058 (17/2955) 0 * Os_TE_622465 Os_TE_622465 Chr12 19186884 19186883 - ORSiTERT00200154 9386 0.0054 (16/2957) 0 * Os_TE_622466 Os_TE_622457 Chr12 19185671 19185672 - TYPEU1 380 0.0178 (53/2972) 0 * Os_TE_622456 Os_TE_622456 Chr12 19185663 19185662 + TYPEU4 402 0.0170 (51/2992) 0 * Os_TE_622457 Os_TE_622442 Chr12 19180002 19180003 + ORSgTETNOOT00908 242 0.0004 (1/2829) 0 * * Os_TE_622441 Chr12 19179731 19179730 + STOWAWAY51_OS 246 0.0003 (1/2960) 0 * * Os_TE_622425 Chr12 19177185 19177186 + ORSgTEMT00900266 245 0.0013 (2/1554) 0 * * Os_TE_622418 Chr12 19175755 19175457 - STOWAWAY20_OS 278 0.5320 (1531/2878) 0.91 Intact * Os_TE_622414 Chr12 19174029 19174030 + RIREX_LTR 8828 0.0284 (44/1547) 0 * Os_TE_622413 Os_TE_622413 Chr12 19174025 19174024 - RIREX_LTR 8828 0.0152 (45/2955) 0 * Os_TE_622414 Os_TE_622396 Chr12 19171805 19171806 - INDITTO 263 0.1400 (416/2971) 0 * * Os_TE_622382 Chr12 19169008 19169007 - RIREX_LTR 8828 0.0028 (8/2808) 0 * * Os_TE_622373 Chr12 19167696 19167349 + ORSgTEMT00100291 345 0.5000 (1470/2940) 1 Intact Os_TE_622368 Os_TE_622368 Chr12 19167347 19167696 - ORSgTEMT00100865 348 0.4629 (1285/2776) 1 Intact Os_TE_622373 Os_TE_622365 Chr12 19164973 19164972 - ORSgTERT00200104 272 0.0010 (3/2993) 0 * * Os_TE_622356 Chr12 19157062 19157063 + MPING 430 0.0004 (1/2845) 0 * * Os_TE_622348 Chr12 19154088 19154089 + STOWAWAY50_OS 174 0.0007 (2/2975) 0 * * Os_TE_622340 Chr12 19146207 19146208 + SZ-62LTR 3649 0.3655 (1087/2974) 0 * Os_TE_622339 Os_TE_622339 Chr12 19146203 19146202 - SZ-62LTR 3649 0.3734 (1114/2983) 0 * Os_TE_622340 Os_TE_622329 Chr12 19136898 19136899 - ORSgTEMT02400179 221 0.0057 (17/2957) 0 * Os_TE_622328 Os_TE_622328 Chr12 19136897 19136896 - TYPEM 227 0.0061 (18/2962) 0 * Os_TE_622329 Os_TE_622317 Chr12 19135658 19135659 + ORSgTEMT00501601 153 0.0055 (16/2930) 0 * * Os_TE_622316 Chr12 19135577 19135576 + ORSgTEMT01601591 242 0.0024 (7/2951) 0 * Os_TE_622315 Os_TE_622315 Chr12 19135574 19135575 + ORSgTEMT01601591 242 0.0021 (6/2879) 0 * Os_TE_622316 Os_TE_622312 Chr12 19135262 19135263 - COWARD 200 0.0054 (16/2954) 0 * * Os_TE_622301 Chr12 19132929 19132930 - ORSgTEMT04200023 393 0.0064 (19/2983) 0 * Os_TE_622300 Os_TE_622300 Chr12 19132921 19132920 - ECR 394 0.0064 (19/2984) 0 * Os_TE_622301 Os_TE_622299 Chr12 19132477 19132478 - SC-8_LTR 4951 0.0003 (1/2984) 0 * Os_TE_622298 Os_TE_622298 Chr12 19132473 19132472 + ORSiTERTOOT00381 4988 0.0003 (1/2959) 0 * Os_TE_622299 Os_TE_622293 Chr12 19124996 19124997 + RIREX_LTR 8828 0.0014 (4/2930) 0 * Os_TE_622292 Os_TE_622292 Chr12 19124992 19124991 - RIREX_LTR 8828 0.0015 (4/2689) 0 * Os_TE_622293 Os_TE_622290 Chr12 19121477 19121478 - COPIA2-LTR_OS 6433 0.0003 (1/2942) 0 * Os_TE_622289 Os_TE_622289 Chr12 19121473 19121472 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_622290 Os_TE_622260 Chr12 19111452 19111453 + ORSgTEMT00600124 361 0.0126 (36/2854) 0 * Os_TE_622259 Os_TE_622259 Chr12 19111450 19111449 + CASTAWAY 364 0.0127 (37/2909) 0 * Os_TE_622260 Os_TE_622256 Chr12 19111192 19110829 + ORSgTEMT04800085 366 0.1164 (338/2904) 1 Intact Os_TE_622254 Os_TE_622254 Chr12 19110826 19111191 - ORSgTEMT04800063 360 0.1157 (339/2929) 1 Intact Os_TE_622256 Os_TE_622252 Chr12 19109101 19109100 + COPI2_LTR 4733 0.0031 (9/2920) 0 * * Os_TE_622241 Chr12 19104020 19104021 + ORSgTEMT00100272 356 0.8750 (2569/2936) 0 * * Os_TE_622238 Chr12 19103955 19103713 - ORSgTEMT01600314 233 0.1106 (323/2921) 1 Intact Os_TE_622237 Os_TE_622237 Chr12 19103710 19103955 - ORSgTEMT01601493 303 0.1129 (330/2923) 1 Intact Os_TE_622238 Os_TE_622236 Chr12 19103682 19103683 + INDITTO 263 0.0010 (3/2927) 0 * Os_TE_622235 Os_TE_622235 Chr12 19103680 19103679 - INDITTO 263 0.0011 (2/1821) 0 * Os_TE_622236 Os_TE_622234 Chr12 19103480 19103479 + SINE1OS 127 0.0168 (50/2985) 0 * * Os_TE_622229 Chr12 19102226 19102227 + OLO24 345 0.8971 (2651/2955) 0 * * Os_TE_622227 Chr12 19102079 19102080 - AMYLTP 383 0.0235 (69/2936) 0 * Os_TE_622226 Os_TE_622226 Chr12 19102071 19102070 + AMYLTP 383 0.0232 (68/2925) 0 * Os_TE_622227 Os_TE_622221 Chr12 19101630 19101631 + DS-RICE3N 525 0.2330 (677/2905) 0 * * Os_TE_622219 Chr12 19100487 19100247 - ORSgTEMT01602413 239 0.1090 (326/2990) 1 Intact Os_TE_622217 Os_TE_622217 Chr12 19100247 19100485 + ORSgTEMT01601525 239 0.1071 (312/2913) 1 Intact Os_TE_622219 Os_TE_622211 Chr12 19093945 19093944 + RETRO2A_LTR 12895 0.0223 (61/2735) 0 * * Os_TE_622210 Chr12 19093644 19093645 - MuDR-N6_OS 836 0.8961 (2588/2888) 0 * * Os_TE_622209 Chr12 19093639 19093638 + ORSgTEMT01602181 239 0.0004 (1/2563) 0 * * Os_TE_622207 Chr12 19092993 19093371 + TYPEU2 382 0.1085 (324/2985) 1 Intact * Os_TE_622199 Chr12 19081266 19081265 + MERMITEB 1610 0.0039 (11/2796) 0 * * Os_TE_622198 Chr12 19079179 19079180 + ORSgTEMT02000018 177 0.0036 (1/275) 0 * * Os_TE_622183 Chr12 19074860 19074861 + SPMLIKE 10989 0.0524 (55/1049) 0 * Os_TE_622182 Os_TE_622182 Chr12 19074858 19074857 - ORSgTETN00200001 10994 0.0464 (49/1056) 0 * Os_TE_622183 Os_TE_622173 Chr12 19073367 19073366 + DS-RICE4N 715 0.3736 (1107/2963) 0 * * Os_TE_622158 Chr12 19060774 19060775 - ORSgTEMT01601208 238 0.0003 (1/2968) 0 * * Os_TE_622153 Chr12 19059054 19059055 + ORSiTERTOOT00296 5553 0.0007 (2/2994) 0 * Os_TE_622152 Os_TE_622152 Chr12 19059050 19059049 - SC-3_LTR 5748 0.0007 (2/2994) 0 * Os_TE_622153 Os_TE_622149 Chr12 19056588 19056589 + ORSgTETNOOT00908 242 0.0007 (2/2982) 0 * * Os_TE_622058 Chr12 18984127 18984128 - ORSgTETN00200001 10994 0.0005 (1/1962) 0 * Os_TE_622057 Os_TE_622057 Chr12 18984125 18984124 + SPMLIKE 10989 0.0032 (1/315) 0 * Os_TE_622058 Os_TE_622056 Chr12 18982180 18980593 - MERMITE18E 1528 0.5965 (309/518) 1 Intact * Os_TE_622048 Chr12 18977330 18977331 - ENSPM6_OS 9815 0.0647 (22/340) 0 * Os_TE_622047 Os_TE_622047 Chr12 18977328 18977327 - CACTA-Q 2268 0.0682 (24/352) 0 * Os_TE_622048 Os_TE_622046 Chr12 18977150 18977151 - SZ-22_LTR 4403 0.0031 (1/321) 0 * Os_TE_622045 Os_TE_622045 Chr12 18977146 18977145 + ORSiTERTOOT00226 792 0.0031 (1/320) 0 * Os_TE_622046 Os_TE_622044 Chr12 18976401 18976402 + ORSiTERTOOT00174 2237 0.0052 (2/384) 0 * * Os_TE_622043 Chr12 18975378 18975377 + ORSgTETN00200005 1121 0.0864 (33/382) 0 * * Os_TE_622005 Chr12 18962603 18962839 - STOWAWAY9_OS 235 0.4777 (310/649) 1 Intact * Os_TE_621995 Chr12 18960747 18961077 + ORSgTEMT00100986 341 0.1052 (310/2947) 1 Intact * Os_TE_621983 Chr12 18956850 18956851 - COPIA2-LTR_OS 6433 0.0009 (1/1136) 0 * Os_TE_621982 Os_TE_621982 Chr12 18956846 18956845 + COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_621983 Os_TE_621977 Chr12 18950128 18950129 - MPING 430 0.0004 (1/2237) 0 * * Os_TE_621973 Chr12 18948559 18948560 - CASLET 354 0.0037 (11/2987) 0 * Os_TE_621972 Os_TE_621972 Chr12 18948557 18948556 + ORSgTEMT00600295 361 0.0037 (11/2989) 0 * Os_TE_621973 Os_TE_621970 Chr12 18947750 18947751 - RETRO2_LTR 12874 0.0017 (5/2972) 0 * Os_TE_621969 Os_TE_621969 Chr12 18947746 18947745 + ORSgTERTOOT00009 12852 0.0017 (5/2955) 0 * Os_TE_621970 Os_TE_621967 Chr12 18946892 18946891 - ORSgTEMT01602413 239 0.0038 (11/2881) 0 * Os_TE_621966 Os_TE_621966 Chr12 18946889 18946890 - ORSgTEMT01602413 239 0.0038 (11/2890) 0 * Os_TE_621967 Os_TE_621964 Chr12 18946297 18946296 + SINE1OS 127 0.6273 (1808/2882) 0 * * Os_TE_621963 Chr12 18946203 18946204 + CASGRANDA 465 0.0033 (9/2739) 0 * * Os_TE_621951 Chr12 18943914 18943913 + TWIF 586 0.0004 (1/2823) 0 * * Os_TE_621923 Chr12 18932874 18932875 - ORSiTETNOOT00156 3648 0.0052 (13/2490) 0 * Os_TE_621922 Os_TE_621922 Chr12 18932867 18932866 + TWIFBIG 3567 0.0055 (14/2545) 0 * Os_TE_621923 Os_TE_621916 Chr12 18931253 18931252 + SINE1OS 127 0.5508 (1648/2992) 0 * * Os_TE_621915 Chr12 18930009 18930010 + SC-3_LTR 5748 0.0158 (47/2983) 0 * Os_TE_621914 Os_TE_621914 Chr12 18930005 18930004 - SC-3_LTR 5748 0.0161 (48/2988) 0 * Os_TE_621915 Os_TE_621887 Chr12 18907859 18907858 + MUDRN5_OS 374 0.0004 (1/2763) 0 * * Os_TE_621874 Chr12 18902394 18902395 - SZ-40LTR 2465 0.0049 (14/2834) 0 * * Os_TE_621872 Chr12 18902167 18898462 - SZ-67LTR 1540 0.4367 (904/2070) 1 Intact * Os_TE_621860 Chr12 18895707 18895706 - STOWAWAY51_OS 246 0.0205 (61/2978) 0 * * Os_TE_621854 Chr12 18892200 18892201 + RETRO2A_LTR 12895 0.0027 (8/2957) 0 * * Os_TE_621831 Chr12 18882503 18882502 - MERMITED 1572 0.0197 (58/2945) 0 * Os_TE_621830 Os_TE_621830 Chr12 18882479 18882480 - MERMITED 1572 0.0213 (63/2956) 0 * Os_TE_621831 Os_TE_621821 Chr12 18874455 18874456 - MPING 430 0.0004 (1/2809) 0 * Os_TE_621820 Os_TE_621820 Chr12 18874453 18874452 + MPING 430 0.0004 (1/2809) 0 * Os_TE_621821 Os_TE_621803 Chr12 18872593 18872594 - CACTA-H 1152 0.2044 (587/2872) 0 * * Os_TE_621757 Chr12 18855550 18855551 + NDNA1TNA_OS 334 0.0031 (9/2942) 0 * Os_TE_621756 Os_TE_621756 Chr12 18855548 18855547 - NDNA1TNA_OS 334 0.0027 (8/2949) 0 * Os_TE_621757 Os_TE_621752 Chr12 18853979 18853978 + ORSiTERTOOT00028 8600 0.0007 (2/2970) 0 * * Os_TE_621746 Chr12 18852023 18852024 + COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * Os_TE_621745 Os_TE_621745 Chr12 18852019 18852018 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_621746 Os_TE_621740 Chr12 18849745 18849744 - TREP215 239 0.6525 (1930/2958) 0 * Os_TE_621739 Os_TE_621739 Chr12 18849742 18849743 + ORSgTEMT01602141 239 0.6539 (1929/2950) 0 * Os_TE_621740 Os_TE_621737 Chr12 18849498 18849499 + CLOUD-7 495 0.0179 (21/1175) 0 * Os_TE_621736 Os_TE_621736 Chr12 18849495 18849494 + CLOUD-7 495 0.0195 (23/1177) 0 * Os_TE_621737 Os_TE_621733 Chr12 18848432 18848433 - SZ-48LTR 3632 0.0064 (19/2991) 0 * * Os_TE_621731 Chr12 18847515 18847516 - ORSiTERTOOT00333 4719 0.0037 (11/2974) 0 * Os_TE_621730 Os_TE_621730 Chr12 18847512 18847511 + ORSiTERTOOT00333 4719 0.0037 (11/2982) 0 * Os_TE_621731 Os_TE_621681 Chr12 18827462 18827463 - ORSgTERT00201216 11284 0.0197 (42/2132) 0 * * Os_TE_621639 Chr12 18797638 18797639 + GAIJIN 147 0.0005 (1/2177) 0 * * Os_TE_621629 Chr12 18796116 18787952 + RIREX_LTR 8828 0.1231 (267/2169) 1 Intact Os_TE_621627 Os_TE_621627 Chr12 18787952 18796116 - RIREX_LTR 8828 0.1251 (272/2175) 1 Intact Os_TE_621629 Os_TE_621626 Chr12 18787917 18787918 - ORSgTETN00200001 10994 0.0060 (13/2163) 0 * Os_TE_621625 Os_TE_621625 Chr12 18787915 18787914 + SPMLIKE 10989 0.0057 (11/1937) 0 * Os_TE_621626 Os_TE_621621 Chr12 18785136 18784921 - ORSgTETNOOT02296 202 0.7384 (2185/2959) 1 Intact * Os_TE_621616 Chr12 18784832 18784833 - EnSpm-13_OS 11171 0.0040 (9/2234) 0 * Os_TE_621615 Os_TE_621615 Chr12 18784830 18784829 + EnSpm-13_OS 11171 0.0046 (10/2167) 0 * Os_TE_621616 Os_TE_621614 Chr12 18783249 18771930 - ORSgTERT00201216 11284 0.1255 (264/2103) 1 Intact Os_TE_621608 Os_TE_621608 Chr12 18771930 18783249 - RIRE2_LTR 11306 0.1171 (243/2075) 1 Intact Os_TE_621614 Os_TE_621606 Chr12 18771875 18771874 - SZ-35LTR 3853 0.0053 (11/2092) 0 * * Os_TE_621572 Chr12 18757982 18757981 - ORSgTEMT01601208 238 0.1538 (453/2945) 0 * * Os_TE_621570 Chr12 18756917 18745308 - ORSgTETN00200001 10994 0.1129 (241/2134) 1 Intact Os_TE_621568 Os_TE_621568 Chr12 18745308 18756917 + SPMLIKE 10989 0.1211 (261/2156) 1 Intact Os_TE_621570 Os_TE_621560 Chr12 18744298 18744297 - ORSgTEMT01601432 239 0.0017 (5/2870) 0 * * Os_TE_621559 Chr12 18744295 18744296 + ORSgTEMT01602181 239 0.0214 (40/1873) 0 * * Os_TE_621556 Chr12 18742700 18742699 + NDNA1TNA_OS 334 0.0201 (44/2192) 0 * Os_TE_621555 Os_TE_621555 Chr12 18742698 18742699 - NDNA1TNA_OS 334 0.0210 (46/2190) 0 * Os_TE_621556 Os_TE_621547 Chr12 18737154 18737153 - ORSiTERTOOT00301 9654 0.0024 (5/2109) 0 * * Os_TE_621526 Chr12 18725578 18725579 - ORSgTETNOOT02536 198 0.0046 (10/2156) 0 * * Os_TE_621503 Chr12 18716779 18716778 - ORSgTETN00200001 10994 0.2301 (654/2842) 0 * * Os_TE_621502 Chr12 18716284 18716285 + SZ-44LTR 1408 0.2614 (768/2938) 0 * * Os_TE_621501 Chr12 18716214 18712239 - SZ-35LTR 3853 0.7220 (2117/2932) 1 Intact Os_TE_621496 Os_TE_621496 Chr12 18712239 18716215 + RETROSAT4_LTR 13504 0.7200 (2080/2889) 1 Solo_LTR Os_TE_621501 Os_TE_621495 Chr12 18712137 18712136 + ORSgTEMT00502094 140 0.0118 (26/2195) 0 * Os_TE_621494 Os_TE_621494 Chr12 18712136 18712137 - ORSgTETNOOT01930 140 0.0082 (24/2914) 0 * Os_TE_621495 Os_TE_621493 Chr12 18711935 18711936 - ORSgTERT00201216 11284 0.0137 (37/2706) 0 * Os_TE_621492 Os_TE_621492 Chr12 18711931 18711930 - RIRE2_LTR 11306 0.0200 (58/2905) 0 * Os_TE_621493 Os_TE_621487 Chr12 18710004 18710005 - MuDR2_OS 6770 0.0019 (4/2162) 0 * Os_TE_621486 Os_TE_621486 Chr12 18709995 18709994 + MuDR2_OS 6770 0.0019 (4/2151) 0 * Os_TE_621487 Os_TE_621484 Chr12 18709450 18709449 + TRUNCATOR2_LTR 2904 0.2211 (610/2759) 0 * * Os_TE_621478 Chr12 18706572 18706573 + RIRE2_LTR 11306 0.0035 (10/2897) 0 * Os_TE_621477 Os_TE_621477 Chr12 18706568 18706567 - RIRE2_LTR 11306 0.0027 (8/2954) 0 * Os_TE_621478 Os_TE_621476 Chr12 18703857 18703856 + STOWAWAY1_OS 149 0.0230 (68/2955) 0 * * Os_TE_621464 Chr12 18699687 18699688 + SC-4_LTR 5218 0.0145 (43/2962) 0 * Os_TE_621463 Os_TE_621463 Chr12 18699683 18699682 - SC-4_LTR 5218 0.0149 (44/2961) 0 * Os_TE_621464 Os_TE_621461 Chr12 18698515 18691142 - GYPSY-B_LTR 7068 0.0932 (267/2866) 1 Intact Os_TE_621444 Os_TE_621444 Chr12 18691140 18698515 + GYPSY-B_LTR 7068 0.1014 (273/2692) 1 Intact Os_TE_621461 Os_TE_621441 Chr12 18689061 18689060 + SEVERIN-2 1952 0.0023 (7/2979) 0 * * Os_TE_621438 Chr12 18688769 18688770 + SZ-17_LTR 3387 0.0003 (1/2991) 0 * Os_TE_621437 Os_TE_621437 Chr12 18688765 18688764 - SZ-17_LTR 3387 0.0003 (1/2993) 0 * Os_TE_621438 Os_TE_621432 Chr12 18686825 18686826 + MUDRN1_OS 764 0.2133 (80/375) 0 * * Os_TE_621430 Chr12 18685402 18685403 + HELITRON8_OS 8831 0.0003 (1/2993) 0 * * Os_TE_621428 Chr12 18685351 18685350 + ORSiTERTOOT00074 4935 0.0227 (68/2994) 0 * * Os_TE_621406 Chr12 18668874 18668662 - TYPEM 227 0.0915 (268/2929) 1 Intact * Os_TE_621400 Chr12 18667357 18667356 + SPMLIKE 10989 0.2325 (686/2950) 0 * * Os_TE_621399 Chr12 18666339 18666340 + SPMLIKE 10989 0.1147 (341/2974) 0 * Os_TE_621398 Os_TE_621398 Chr12 18666337 18666336 - ORSgTETN00200001 10994 0.1078 (315/2921) 0 * Os_TE_621399 Os_TE_621397 Chr12 18664606 18664607 + ORSiTETNOOT00107 906 0.0274 (80/2920) 0 * * Os_TE_621379 Chr12 18653000 18652852 - ORSgTEMT00501204 149 0.0896 (268/2992) 1 Intact Os_TE_621378 Os_TE_621378 Chr12 18652852 18652995 + ORSgTEMT00500560 148 0.0898 (267/2973) 1 Intact Os_TE_621379 Os_TE_621374 Chr12 18651523 18651524 - RIREX_LTR 8828 0.0003 (1/2902) 0 * Os_TE_621373 Os_TE_621373 Chr12 18651519 18651518 + RIREX_LTR 8828 0.0004 (1/2809) 0 * Os_TE_621374 Os_TE_621371 Chr12 18650166 18650167 - OSTONOR1_LTR 6440 0.0003 (1/2879) 0 * * Os_TE_621369 Chr12 18649607 18649606 + F118 179 0.0106 (3/283) 0 * * Os_TE_621368 Chr12 18649019 18649018 + SPMLIKE 10989 0.2350 (699/2974) 0 * * Os_TE_621364 Chr12 18647638 18647424 - COWARD-3 221 0.1326 (256/1930) 1 Intact Os_TE_621361 Os_TE_621361 Chr12 18647424 18647639 - COWARD-3 221 0.0900 (259/2877) 1 Intact Os_TE_621364 Os_TE_621357 Chr12 18646388 18647376 + CACTA-L 1162 0.1062 (264/2485) -1 Intact * Os_TE_621355 Chr12 18645748 18645749 + ORSgTEMT01900027 302 0.0024 (7/2922) 0 * * Os_TE_621350 Chr12 18642047 18631150 + SPMLIKE 10989 0.0823 (235/2857) 1 Intact Os_TE_621347 Os_TE_621347 Chr12 18631150 18642047 - ORSgTETN00200001 10994 0.0821 (234/2850) 1 Intact Os_TE_621350 Os_TE_621346 Chr12 18630888 18630889 + ORSiTERTOOT00366 5449 0.0003 (1/2977) 0 * Os_TE_621345 Os_TE_621345 Chr12 18630884 18630883 - ORSiTERTOOT00366 5449 0.0003 (1/2976) 0 * Os_TE_621346 Os_TE_621344 Chr12 18630748 18630749 + CACTA-B 1103 0.1035 (306/2956) 0 * * Os_TE_621343 Chr12 18630629 18630630 + COPIA1-LTR_OS 9292 0.8934 (2673/2992) 0 * Os_TE_621342 Os_TE_621342 Chr12 18630626 18630625 - COPIA1-LTR_OS 9292 0.8931 (2665/2984) 0 * Os_TE_621343 Os_TE_621336 Chr12 18628839 18628840 - ORSgTEMT01601208 238 0.0051 (15/2936) 0 * * Os_TE_621335 Chr12 18628458 18628459 - WANDERER 232 0.0220 (66/2995) 0 * * Os_TE_621333 Chr12 18628030 18628029 - F524 291 0.0014 (4/2890) 0 * * Os_TE_621330 Chr12 18624653 18623439 - CACTA-L 1162 0.8344 (272/326) 1 Intact * Os_TE_621327 Chr12 18623231 18623230 - ORSgTETN00200001 10994 0.0175 (52/2975) 0 * * Os_TE_621325 Chr12 18622650 18622649 + OSTONOR1_LTR 6440 0.0030 (9/2982) 0 * * Os_TE_621324 Chr12 18622302 18622301 - ORSgTEMT01602413 239 0.0177 (53/2992) 0 * Os_TE_621323 Os_TE_621323 Chr12 18622299 18622300 - ORSgTEMT01602413 239 0.0186 (55/2959) 0 * Os_TE_621324 Os_TE_621320 Chr12 18621937 18621938 - OSTE15 1168 0.0023 (7/2986) 0 * * Os_TE_621318 Chr12 18621782 18621781 + ORSgTEMT01600756 231 0.0234 (10/428) 0 * * Os_TE_621306 Chr12 18616455 18616456 - COPI1_LTR 4721 0.0075 (2/265) 0 * * Os_TE_621300 Chr12 18615510 18615726 + COWARD-3 221 0.2043 (238/1165) 1 Intact * Os_TE_621297 Chr12 18614051 18614052 + DS-RICE3N 525 0.0167 (49/2942) 0 * * Os_TE_621296 Chr12 18614014 18614015 - ORSgTERT00201216 11284 0.0264 (66/2504) 0 * Os_TE_621295 Os_TE_621295 Chr12 18614010 18614009 - RIRE2_LTR 11306 0.0265 (78/2946) 0 * Os_TE_621296 Os_TE_621293 Chr12 18613733 18613971 + ORSgTEMT01602029 239 0.1217 (241/1980) 1 Intact * Os_TE_621291 Chr12 18610624 18610422 + LTR10_OS 202 0.0863 (244/2826) 1 Intact Os_TE_621285 Os_TE_621285 Chr12 18607828 18610624 - LTR10_OS 202 0.1081 (256/2369) 1 Intact Os_TE_621291 Os_TE_621271 Chr12 18597271 18597270 - STOWAWAY13_OS 251 0.0269 (79/2939) 0 * * Os_TE_621251 Chr12 18588165 18588164 - SZ-36LTR 5825 0.0024 (7/2961) 0 * * Os_TE_621250 Chr12 18587547 18587548 + COPIA1-LTR_OS 9292 0.0004 (1/2606) 0 * * Os_TE_621249 Chr12 18584970 18584969 - GLUTEL1LIKE 273 0.8761 (2553/2914) 0 * * Os_TE_621246 Chr12 18583327 18583328 - SZ-62LTR 3649 0.8829 (2616/2963) 0 * Os_TE_621245 Os_TE_621245 Chr12 18583323 18583322 + SZ-62LTR 3649 0.8606 (1568/1822) 0 * Os_TE_621246 Os_TE_621244 Chr12 18583043 18583044 + ORSiCMCM00100013 9728 0.0004 (1/2581) 0 * * Os_TE_621242 Chr12 18582928 18582927 - ORSgTERT00201216 11284 0.2393 (684/2858) 0 * * Os_TE_621241 Chr12 18582692 18582693 + SPMLIKE 10989 0.0495 (147/2969) 0 * Os_TE_621240 Os_TE_621240 Chr12 18582690 18582689 - ORSgTETN00200001 10994 0.0467 (138/2953) 0 * Os_TE_621241 Os_TE_621239 Chr12 18582535 18582534 - ORSgTEMT01601208 238 0.0231 (68/2945) 0 * * Os_TE_621233 Chr12 18580475 18580474 + NDNA1TNA_OS 334 0.4109 (1219/2967) 0 * Os_TE_621232 Os_TE_621232 Chr12 18580474 18580475 + ORSgTEMT00100272 356 0.4159 (1222/2938) 0 * Os_TE_621233 Os_TE_621231 Chr12 18580080 18580081 - CRATA 4786 0.0069 (20/2917) 0 * * Os_TE_621228 Chr12 18577739 18577635 + ZM13-2_OS 108 0.0988 (253/2562) 1 Intact * Os_TE_621225 Chr12 18574790 18576183 - SZ-44LTR 1408 0.2127 (252/1185) 1 Intact * Os_TE_621222 Chr12 18572356 18567803 - STOWAWAY50_OS 174 0.0835 (240/2875) 1 Intact * Os_TE_621216 Chr12 18567234 18567233 - ORSgTETNOOT01607 258 0.0040 (1/247) 0 * * Os_TE_621214 Chr12 18566532 18566533 - DS-RICE2N 613 0.1841 (542/2944) 0 * * Os_TE_621133 Chr12 18528821 18528820 - TRUNCATOR 2918 0.7795 (859/1102) 0 * Os_TE_621132 Os_TE_621132 Chr12 18528820 18528821 + TRUNCATOR 2918 0.4278 (1230/2875) 0 * Os_TE_621133 Os_TE_621125 Chr12 18521290 18521051 + ORSgTEMT01601036 240 0.0835 (242/2898) 1 Intact * Os_TE_621118 Chr12 18519537 18519536 - MERMITE-17 2759 0.3080 (844/2740) 0 * * Os_TE_621117 Chr12 18519150 18518082 - CACTA-H 1152 0.0826 (236/2856) 1 Intact * Os_TE_621112 Chr12 18516599 18516598 + STOWAWAY11_OS 292 0.0325 (91/2804) 0 * * Os_TE_621107 Chr12 18513815 18513554 - ORSgTEMT00101174 225 0.0847 (224/2644) 1 Intact * Os_TE_621104 Chr12 18512122 18512123 - COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_621103 Os_TE_621103 Chr12 18512118 18512117 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_621104 Os_TE_621093 Chr12 18506819 18508303 + ORSiCMCM00100013 9728 0.1099 (252/2294) 1 Intact * Os_TE_621054 Chr12 18495904 18495905 - TREP219 104 0.0044 (1/228) 0 * * Os_TE_621053 Chr12 18495870 18495660 + ORSgTEMT01601122 212 0.1245 (233/1872) 1 Intact * Os_TE_621051 Chr12 18495336 18495335 + SPMLIKE 10989 0.0003 (1/2957) 0 * * Os_TE_621039 Chr12 18487905 18487906 - ORSgTETNOOT00323 125 0.0003 (1/2938) 0 * * Os_TE_621018 Chr12 18469288 18469287 - AMYLTP 383 0.0019 (2/1074) 0 * * Os_TE_621017 Chr12 18468810 18467070 + SEVERIN-2 1952 0.7749 (809/1044) 1 Intact Os_TE_621016 Os_TE_621016 Chr12 18467070 18468810 - SEVERIN-2 1952 0.7551 (737/976) 1 Intact Os_TE_621017 Os_TE_620974 Chr12 18452642 18452643 - ORSgTEMT00900131 245 0.4992 (922/1847) 0 * * Os_TE_620970 Chr12 18451049 18451050 + CACTA-I 1124 0.0040 (4/1011) -1 * * Os_TE_620952 Chr12 18443631 18413352 + ORSgTEMT01602188 240 0.4489 (1308/2914) 1 Intact * Os_TE_620897 Chr12 18413057 18413058 + AMYLTP 383 0.0010 (3/2957) 0 * Os_TE_620896 Os_TE_620896 Chr12 18413049 18413048 - AMYLTP 383 0.0014 (4/2954) 0 * Os_TE_620897 Os_TE_620894 Chr12 18412890 18412889 + CACTA-B 1103 0.5697 (1668/2928) 0 * Os_TE_620893 Os_TE_620893 Chr12 18412889 18412890 - ORSgTETN00200001 10994 0.5586 (1583/2834) 0 * Os_TE_620894 Os_TE_620892 Chr12 18412691 18412692 - RIREX_LTR 8828 0.0156 (46/2942) 0 * Os_TE_620891 Os_TE_620891 Chr12 18412687 18412686 + RIREX_LTR 8828 0.0162 (48/2956) 0 * Os_TE_620892 Os_TE_620890 Chr12 18412468 18412469 - ORSgTERT00201216 11284 0.0166 (49/2951) 0 * Os_TE_620889 Os_TE_620889 Chr12 18412464 18412463 - RIRE2_LTR 11306 0.0149 (44/2958) 0 * Os_TE_620890 Os_TE_620888 Chr12 18411823 18411824 + ORSiTERT00200145 12238 0.0420 (121/2881) 0 * Os_TE_620887 Os_TE_620887 Chr12 18411819 18411818 - RETROSAT5_LTR 13878 0.0471 (137/2906) 0 * Os_TE_620888 Os_TE_620886 Chr12 18410785 18410786 + TRUNCATOR2_LTR 2904 0.0136 (40/2950) 0 * Os_TE_620885 Os_TE_620885 Chr12 18410781 18410780 - TRUNCATOR2_LTR 2904 0.0138 (41/2965) 0 * Os_TE_620886 Os_TE_620884 Chr12 18410730 18410731 + COPIA2-LTR_OS 6433 0.0027 (8/2957) 0 * Os_TE_620883 Os_TE_620883 Chr12 18410726 18410725 - COPIA2-LTR_OS 6433 0.0030 (9/2958) 0 * Os_TE_620884 Os_TE_620877 Chr12 18409270 18409269 + ENSPM4_OS 11610 0.0013 (4/2968) 0 * * Os_TE_620875 Chr12 18409110 18409111 + MERMITE-18 1263 0.0014 (4/2961) 0 * * Os_TE_620869 Chr12 18396848 18396849 + RETROSAT4_LTR 13504 0.0147 (43/2924) 0 * Os_TE_620868 Os_TE_620868 Chr12 18396844 18396843 - RETROSAT4_LTR 13504 0.0162 (48/2961) 0 * Os_TE_620869 Os_TE_620865 Chr12 18395096 18395097 + RIREX_LTR 8828 0.0003 (1/2910) 0 * Os_TE_620864 Os_TE_620864 Chr12 18395092 18395091 - RIREX_LTR 8828 0.0003 (1/2926) 0 * Os_TE_620865 Os_TE_620857 Chr12 18392606 18392605 - TRUNCATOR 2918 0.2309 (677/2932) 0 * Os_TE_620856 Os_TE_620856 Chr12 18392605 18392606 + TRUNCATOR 2918 0.2457 (727/2959) 0 * Os_TE_620857 Os_TE_620855 Chr12 18392593 18392594 + ORSgTEMT00100011 343 0.0051 (15/2970) 0 * * Os_TE_620838 Chr12 18387568 18387569 + SC-8_LTR 4951 0.0003 (1/2897) 0 * Os_TE_620837 Os_TE_620837 Chr12 18387564 18387563 - SC-8_LTR 4951 0.0003 (1/2898) 0 * Os_TE_620838 Os_TE_620824 Chr12 18381377 18381378 + SINE1OS 127 0.0010 (3/2988) 0 * Os_TE_620823 Os_TE_620823 Chr12 18381365 18381364 - SINE16_OS 116 0.0010 (3/2989) 0 * Os_TE_620824 Os_TE_620822 Chr12 18380534 18375474 + RETROFIT3_LTR 5391 0.0996 (297/2981) 1 Intact Os_TE_620821 Os_TE_620821 Chr12 18375476 18380534 - RETROFIT3_LTR 5391 0.0986 (294/2983) 1 Intact Os_TE_620822 Os_TE_620818 Chr12 18373769 18373770 - OSTE21 1271 0.0145 (43/2960) 0 * * Os_TE_620812 Chr12 18367408 18367409 - ORSiTETNOOT00216 3569 0.0034 (10/2985) 0 * Os_TE_620811 Os_TE_620811 Chr12 18367401 18367400 + TWIFBIG 3567 0.0034 (10/2983) 0 * Os_TE_620812 Os_TE_620810 Chr12 18367252 18367253 - MERMITED 1572 0.0010 (3/2969) 0 * * Os_TE_620787 Chr12 18362214 18362213 + NDNA1TNA_OS 334 0.0115 (27/2351) 0 * * Os_TE_620786 Chr12 18362210 18362211 - ORSgTEMT01601432 239 0.0016 (4/2488) 0 * * Os_TE_620785 Chr12 18360749 18360748 + ORSgTEMT02400245 225 0.0318 (95/2990) 0 * Os_TE_620784 Os_TE_620784 Chr12 18360748 18360749 - TYPEM 227 0.0321 (96/2991) 0 * Os_TE_620785 Os_TE_620775 Chr12 18357982 18357983 + DS-RICE4N 715 0.0030 (9/2982) 0 * Os_TE_620774 Os_TE_620774 Chr12 18357975 18357974 - DS-RICE2N 613 0.0034 (10/2964) 0 * Os_TE_620775 Os_TE_620727 Chr12 18331540 18331541 + RETROSAT2LTRA 3112 0.0023 (7/2981) 0 * * Os_TE_620723 Chr12 18330180 18330181 - F770 284 0.0027 (8/2991) 0 * * Os_TE_620665 Chr12 18319444 18319445 - OsSN3 183 0.0013 (3/2396) 0 * * Os_TE_620662 Chr12 18317269 18317270 - SC-3_LTR 5748 0.0003 (1/2994) 0 * * Os_TE_620648 Chr12 18305045 18305046 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_620647 Os_TE_620647 Chr12 18305041 18305040 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_620648 Os_TE_620632 Chr12 18298948 18298949 - RETROSAT2LTR 12796 0.0007 (2/2994) 0 * Os_TE_620631 Os_TE_620631 Chr12 18298946 18298945 + RETROSAT2LTR 12796 0.0003 (1/2997) 0 * Os_TE_620632 Os_TE_620618 Chr12 18290880 18290881 - MERMITEA 1710 0.1106 (330/2983) 0 * Os_TE_620617 Os_TE_620617 Chr12 18290872 18290871 - MERMITEA 1710 0.1061 (294/2770) 0 * Os_TE_620618 Os_TE_620616 Chr12 18290767 18290768 + DS-RICE4N 715 0.0003 (1/2979) 0 * * Os_TE_620607 Chr12 18285006 18285007 + RETRO2_LTR 12874 0.0003 (1/2976) 0 * Os_TE_620606 Os_TE_620606 Chr12 18285002 18285001 - RETRO2_LTR 12874 0.0003 (1/2985) 0 * Os_TE_620607 Os_TE_620603 Chr12 18284273 18284274 + ORSiTERTOOT00028 8600 0.0013 (4/2994) 0 * * Os_TE_620602 Chr12 18284232 18284233 - RETROSAT5_LTR 13878 0.0013 (4/2992) 0 * Os_TE_620601 Os_TE_620601 Chr12 18284228 18284227 + SZ-67LTR 1540 0.0013 (4/2992) 0 * Os_TE_620602 Os_TE_620597 Chr12 18280458 18280459 + OSTONOR1_LTR 6440 0.0191 (57/2986) 0 * Os_TE_620596 Os_TE_620596 Chr12 18280454 18280453 - OSTONOR1_LTR 6440 0.0181 (54/2987) 0 * Os_TE_620597 Os_TE_620588 Chr12 18276458 18276457 + ORSgTETNOOT00908 242 0.2583 (773/2993) 0 * * Os_TE_620581 Chr12 18269264 18269265 + ORSgTEMT02400014 229 0.5616 (1368/2436) 0 * * Os_TE_620576 Chr12 18268170 18268171 - EnSpm-13_OS 11171 0.0012 (3/2432) 0 * Os_TE_620575 Os_TE_620575 Chr12 18268168 18268167 + EnSpm-13_OS 11171 0.0012 (3/2438) 0 * Os_TE_620576 Os_TE_620573 Chr12 18266875 18266876 - RETROSAT2LTR 12796 0.0246 (60/2437) 0 * Os_TE_620572 Os_TE_620572 Chr12 18266873 18266872 + RETROSAT2LTR 12796 0.0246 (60/2437) 0 * Os_TE_620573 Os_TE_620570 Chr12 18266122 18266123 + CACTA-B 1103 0.1730 (486/2810) 0 * * Os_TE_620568 Chr12 18265058 18265059 + SEVERIN-2 1952 0.0003 (1/2986) 0 * * Os_TE_620547 Chr12 18213681 18212507 + ORSgTETN00200005 1121 0.8070 (2391/2963) 1 Intact Os_TE_620546 Os_TE_620546 Chr12 18212507 18213678 + CACTA-H 1152 0.8053 (2387/2964) 1 Intact Os_TE_620547 Os_TE_620544 Chr12 18212168 18212169 + OSTE15 1168 0.0008 (2/2413) 0 * * Os_TE_620540 Chr12 18211621 18211622 - ORSgTEMT01601696 238 0.1304 (313/2400) 0 * * Os_TE_620531 Chr12 18208480 18208481 + MDM2 312 0.1946 (577/2965) 0 * Os_TE_620530 Os_TE_620530 Chr12 18208472 18208471 + MDM2 312 0.1720 (497/2889) 0 * Os_TE_620531 Os_TE_620527 Chr12 18208193 18208194 + TRUNCATOR 2918 0.0036 (9/2484) 0 * * Os_TE_620526 Chr12 18208145 18208144 + Cassandra_OS-LTR 764 0.1880 (559/2973) 0 * Os_TE_620525 Os_TE_620525 Chr12 18208139 18208140 - Cassandra_OS-LTR 764 0.2000 (599/2995) 0 * Os_TE_620526 Os_TE_620516 Chr12 18206281 18206282 - RIREX_LTR 8828 0.0004 (1/2819) 0 * Os_TE_620515 Os_TE_620515 Chr12 18206277 18206276 + RIREX_LTR 8828 0.0004 (1/2398) 0 * Os_TE_620516 Os_TE_620514 Chr12 18206252 18206253 + SPMLIKE 10989 0.0260 (64/2465) 0 * Os_TE_620513 Os_TE_620513 Chr12 18206250 18206249 - ORSgTETN00200001 10994 0.1698 (494/2909) 0 * Os_TE_620514 Os_TE_620505 Chr12 18202510 18202272 - TREP215 239 0.7542 (2188/2901) 1 Intact Os_TE_620503 Os_TE_620503 Chr12 18202272 18202510 + ORSgTEMT01602051 240 0.7495 (2184/2914) 1 Intact Os_TE_620505 Os_TE_620499 Chr12 18200836 18197164 + RETROSAT4_LTR 13504 0.2800 (817/2918) 1 Solo_LTR Os_TE_620498 Os_TE_620498 Chr12 18197164 18200836 - SZ-35LTR 3853 0.2640 (750/2841) 1 Intact Os_TE_620499 Os_TE_620497 Chr12 18195259 18195260 - ORSgTERT00201216 11284 0.0041 (11/2715) 0 * Os_TE_620496 Os_TE_620496 Chr12 18195255 18195254 - RIRE2_LTR 11306 0.0044 (12/2730) 0 * Os_TE_620497 Os_TE_620495 Chr12 18195142 18195141 + NDNA1TNA_OS 334 0.3217 (866/2692) 0 * Os_TE_620494 Os_TE_620494 Chr12 18195134 18195135 + ORSgTEMT00100531 325 0.3337 (914/2739) 0 * Os_TE_620495 Os_TE_620485 Chr12 18193188 18193187 - ORSgTETNOOT01607 258 0.0074 (21/2854) 0 * * Os_TE_620474 Chr12 18190860 18184428 - COPIA2-LTR_OS 6433 0.0869 (246/2831) 1 Intact Os_TE_620470 Os_TE_620470 Chr12 18184428 18190860 + COPIA2-LTR_OS 6433 0.0855 (242/2829) 1 Intact Os_TE_620474 Os_TE_620460 Chr12 18180699 18180698 - OSTE21 1271 0.0087 (21/2401) 0 * * Os_TE_620454 Chr12 18173444 18173443 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * * Os_TE_620312 Chr12 18119187 18119188 + RIREX_LTR 8828 0.0011 (3/2791) 0 * Os_TE_620311 Os_TE_620311 Chr12 18119183 18119182 - RIREX_LTR 8828 0.0007 (2/2791) 0 * Os_TE_620312 Os_TE_620297 Chr12 18116454 18116455 - ORSgTETN00200001 10994 0.0436 (105/2409) 0 * Os_TE_620296 Os_TE_620296 Chr12 18116452 18116451 + SPMLIKE 10989 0.0407 (98/2409) 0 * Os_TE_620297 Os_TE_620295 Chr12 18115087 18115088 - SZ-36LTR 5825 0.0004 (1/2383) 0 * * Os_TE_620294 Chr12 18114426 18114427 + CACTA-M 1129 0.0078 (19/2439) 0 * * Os_TE_620293 Chr12 18114408 18114409 - ORSgTERT00201216 11284 0.0016 (4/2425) 0 * Os_TE_620292 Os_TE_620292 Chr12 18114378 18114377 - RIRE2_LTR 11306 0.0016 (4/2438) 0 * Os_TE_620293 Os_TE_620279 Chr12 18111226 18111227 - ORSgTETN00200001 10994 0.0003 (1/2982) 0 * * Os_TE_620277 Chr12 18110890 18110891 - SZ-35LTR 3853 0.0584 (174/2977) 0 * Os_TE_620276 Os_TE_620276 Chr12 18110886 18110885 + RETROSAT4_LTR 13504 0.0568 (169/2974) 0 * Os_TE_620277 Os_TE_620275 Chr12 18110022 18110021 + SEVERIN-2 1952 0.0217 (64/2948) 0 * * Os_TE_620273 Chr12 18108994 18108995 - ORSgTERT00201216 11284 0.0027 (8/2935) 0 * Os_TE_620272 Os_TE_620272 Chr12 18108990 18108989 - RIRE2_LTR 11306 0.0024 (7/2963) 0 * Os_TE_620273 Os_TE_620239 Chr12 18095555 18095556 - TRUNCATOR2_LTR 2904 0.0168 (49/2918) 0 * Os_TE_620238 Os_TE_620238 Chr12 18095551 18095550 - TRUNCATOR2_LTR 2904 0.0174 (51/2934) 0 * Os_TE_620239 Os_TE_620227 Chr12 18090649 18090650 - COPIA2-LTR_OS 6433 0.2454 (729/2971) 0 * Os_TE_620226 Os_TE_620226 Chr12 18090645 18090644 + COPIA2-LTR_OS 6433 0.2283 (668/2926) 0 * Os_TE_620227 Os_TE_620225 Chr12 18090613 18090612 - ORSiTETNOOT00107 906 0.0003 (1/2927) 0 * Os_TE_620224 Os_TE_620224 Chr12 18090609 18090610 + ORSiTETNOOT00107 906 0.0003 (1/2971) 0 * Os_TE_620225 Os_TE_620223 Chr12 18090155 18090154 - TRUNCATOR 2918 0.0003 (1/2972) 0 * Os_TE_620222 Os_TE_620222 Chr12 18090154 18090155 + TRUNCATOR 2918 0.0003 (1/2963) 0 * Os_TE_620223 Os_TE_620221 Chr12 18089967 18089968 - SEVERIN-2 1952 0.2349 (693/2950) 0 * * Os_TE_620213 Chr12 18088093 18088092 - ORSgTETN00200001 10994 0.0003 (1/2972) 0 * * Os_TE_620212 Chr12 18087846 18087847 + ORSgTETNOOT00908 242 0.0004 (1/2789) 0 * * Os_TE_620210 Chr12 18086981 18086980 + SEVERIN-2 1952 0.0045 (8/1792) 0 * * Os_TE_620209 Chr12 18086906 18086907 - RIREX_LTR 8828 0.0020 (6/2991) 0 * * Os_TE_620204 Chr12 18085770 18085771 + DS-RICE4N 715 0.1684 (501/2975) 0 * Os_TE_620203 Os_TE_620203 Chr12 18085763 18085762 - DS-RICE2N 613 0.1702 (508/2984) 0 * Os_TE_620204 Os_TE_620195 Chr12 18084548 18084549 - CLOUD 734 0.0012 (3/2492) 0 * * Os_TE_620186 Chr12 18081524 18081525 - RIREX_LTR 8828 0.0003 (1/2979) 0 * * Os_TE_620183 Chr12 18078214 18080578 - SEVERIN-2 1952 0.0964 (129/1338) 1 Intact * Os_TE_620181 Chr12 18077807 18077808 + SPMLIKE 10989 0.0018 (3/1667) 0 * * Os_TE_620169 Chr12 18073948 18073947 + ORSgTEMT00900079 241 0.0003 (1/2895) 0 * * Os_TE_620153 Chr12 18065678 18065679 + RETROSAT4_LTR 13504 0.0061 (18/2959) 0 * Os_TE_620152 Os_TE_620152 Chr12 18065674 18065673 - SZ-35LTR 3853 0.0064 (19/2958) 0 * Os_TE_620153 Os_TE_620144 Chr12 18063415 18063416 + SPMLIKE 10989 0.0003 (1/2895) 0 * Os_TE_620143 Os_TE_620143 Chr12 18063413 18063412 - ORSgTETN00200001 10994 0.0003 (1/2889) 0 * Os_TE_620144 Os_TE_620140 Chr12 18062776 18062777 - ORSgTEMT02400179 221 0.0003 (1/2930) 0 * * Os_TE_620137 Chr12 18061236 18061237 - TNR2A 152 0.0013 (4/2967) 0 * * Os_TE_620135 Chr12 18060854 18060853 + RIREX_LTR 8828 0.0155 (44/2838) 0 * * Os_TE_620117 Chr12 18053697 18053698 - MUDRN3_OS 903 0.0062 (18/2923) 0 * Os_TE_620116 Os_TE_620116 Chr12 18053689 18053688 - MUDRN3_OS 903 0.0082 (24/2929) 0 * Os_TE_620117 Os_TE_620113 Chr12 18053465 18053464 - SEVERIN-2 1952 0.0031 (9/2894) 0 * * Os_TE_620111 Chr12 18052947 18052948 - ORSgTETN00200001 10994 0.0003 (1/2966) 0 * Os_TE_620110 Os_TE_620110 Chr12 18052945 18052944 + SPMLIKE 10989 0.0003 (1/2960) 0 * Os_TE_620111 Os_TE_620109 Chr12 18052740 18052739 - ORSgTEMT01702346 154 0.0094 (28/2983) 0 * Os_TE_620108 Os_TE_620108 Chr12 18052737 18052738 - ORSgTEMT01700317 132 0.0074 (22/2979) 0 * Os_TE_620109 Os_TE_620103 Chr12 18051685 18051686 + COPI2_LTR 4733 0.0003 (1/2954) 0 * * Os_TE_620089 Chr12 18048558 18048557 + ORSgTEMT01601599 239 0.0074 (22/2977) 0 * Os_TE_620088 Os_TE_620088 Chr12 18048555 18048556 - ORSgTEMT01600750 238 0.0077 (23/2983) 0 * Os_TE_620089 Os_TE_620077 Chr12 18040343 18040342 - DS-RICE4N 715 0.0080 (24/2987) 0 * * Os_TE_620075 Chr12 18039072 18039073 + TYPEH 309 0.0010 (3/2982) 0 * Os_TE_620074 Os_TE_620074 Chr12 18039071 18039070 - TYPEH 309 0.0010 (3/2974) 0 * Os_TE_620075 Os_TE_620061 Chr12 18024231 18037127 - ENSPM3_OS 10837 0.4180 (1195/2859) 1 Intact * Os_TE_620059 Chr12 18024141 18023903 + ORSgTEMT01602051 240 0.7292 (1225/1680) 1 Intact * Os_TE_620053 Chr12 18023846 18023845 + RETROSAT4_LTR 13504 0.0223 (52/2332) 0 * * Os_TE_620052 Chr12 18023232 18023233 + SZ-30_LTR 6377 0.0104 (13/1246) 0 * * Os_TE_620051 Chr12 18023223 18023224 - COPIA2-LTR_OS 6433 0.0003 (1/2953) 0 * * Os_TE_620043 Chr12 18021990 18021989 - MuDR4_OS 7610 0.0134 (40/2984) 0 * * Os_TE_620020 Chr12 18016193 18016192 - ENSPM4_OS 11610 0.0005 (1/2106) 0 * * Os_TE_620019 Chr12 18016172 18016173 - MPING 430 0.0005 (1/2107) 0 * Os_TE_620018 Os_TE_620018 Chr12 18016170 18016169 + MPING 430 0.0005 (1/2104) 0 * Os_TE_620019 Os_TE_620017 Chr12 18015836 18015837 + OSTE33 1012 0.0033 (7/2131) 0 * * Os_TE_619996 Chr12 18009503 18009502 + ORSgTEMT01602181 239 0.0007 (2/2897) 0 * * Os_TE_619992 Chr12 18006735 18006736 + COPI2_LTR 4733 0.0007 (2/2898) 0 * Os_TE_619991 Os_TE_619991 Chr12 18006731 18006730 - COPI2_LTR 4733 0.0010 (3/2878) 0 * Os_TE_619992 Os_TE_619989 Chr12 18006367 18006366 - SZ-9LTR 965 0.0003 (1/2896) 0 * * Os_TE_619988 Chr12 18005843 18005844 + ORSgTETNOOT00032 218 0.0003 (1/2898) 0 * Os_TE_619987 Os_TE_619987 Chr12 18005836 18005835 - TESS 244 0.0003 (1/2892) 0 * Os_TE_619988 Os_TE_619985 Chr12 18005358 18005359 - TRUNCATOR2_LTR 2904 0.0063 (19/2997) 0 * Os_TE_619984 Os_TE_619984 Chr12 18005354 18005353 + ORSiCMCM00100019 2717 0.0053 (16/2995) 0 * Os_TE_619985 Os_TE_619982 Chr12 18003776 18003777 + NDNA1TNA_OS 334 0.0555 (166/2990) 0 * Os_TE_619981 Os_TE_619981 Chr12 18003774 18003773 - NDNA1TNA_OS 334 0.0542 (162/2987) 0 * Os_TE_619982 Os_TE_619980 Chr12 18003609 18003608 + STOWAWAY21_OS 243 0.0007 (2/2991) 0 * Os_TE_619979 Os_TE_619979 Chr12 18003608 18003609 + ORSgTEMT01601122 212 0.0007 (2/2989) 0 * Os_TE_619980 Os_TE_619977 Chr12 18002144 17993653 - MuDR3_OS 8604 0.2653 (784/2955) 1 Intact Os_TE_619973 Os_TE_619973 Chr12 17993650 18002138 - MuDR3_OS 8604 0.2624 (777/2961) 1 Intact Os_TE_619977 Os_TE_619916 Chr12 17984588 17984589 - ORSgTETN00200001 10994 0.0064 (19/2954) 0 * Os_TE_619915 Os_TE_619915 Chr12 17984586 17984585 + CACTA-M 1129 0.0068 (20/2951) 0 * Os_TE_619916 Os_TE_619914 Chr12 17984464 17983775 - ORSiTETNOOT00182 690 0.0812 (240/2955) 1 Intact Os_TE_619913 Os_TE_619913 Chr12 17983775 17984461 + TWIFBIG 3567 0.1446 (190/1314) 1 Intact Os_TE_619914 Os_TE_619907 Chr12 17983523 17983522 - ORSgTEMT00700002 381 0.0014 (4/2816) 0 * Os_TE_619906 Os_TE_619906 Chr12 17983522 17983523 + MUDRN5_OS 374 0.0010 (3/2917) 0 * Os_TE_619907 Os_TE_619901 Chr12 17981956 17981955 + ORSgTEMT00100828 349 0.0003 (1/2937) 0 * * Os_TE_619898 Chr12 17978772 17978771 + ORSgTEMT01700637 157 0.0007 (2/2980) 0 * * Os_TE_619890 Chr12 17975534 17975533 - RETROSAT2LTR 12796 0.0878 (153/1742) 0 * * Os_TE_619886 Chr12 17975055 17975056 + SEVERIN-2 1952 0.0007 (2/2913) 0 * * Os_TE_619879 Chr12 17972036 17972037 - ORSgTEMT00600478 361 0.0007 (2/2988) 0 * * Os_TE_619876 Chr12 17971444 17971443 - TRUNCATOR 2918 0.0010 (3/2996) 0 * Os_TE_619875 Os_TE_619875 Chr12 17971443 17971444 + TRUNCATOR 2918 0.0010 (3/2995) 0 * Os_TE_619876 Os_TE_619860 Chr12 17964278 17964279 - ORSiTERTOOT00427 5125 0.0060 (18/2996) 0 * Os_TE_619859 Os_TE_619859 Chr12 17964274 17964273 + ORSiTERTOOT00427 5125 0.0060 (18/2995) 0 * Os_TE_619860 Os_TE_619853 Chr12 17954782 17954783 + ORSiTERT00200145 12238 0.0057 (17/2973) 0 * Os_TE_619852 Os_TE_619852 Chr12 17954778 17954777 - SZ-67LTR 1540 0.0064 (19/2973) 0 * Os_TE_619853 Os_TE_619848 Chr12 17953435 17953434 - RIREX_LTR 8828 0.0017 (5/2987) 0 * * Os_TE_619836 Chr12 17951991 17951990 + ORSgTEMT00800058 376 0.0013 (4/2973) 0 * Os_TE_619835 Os_TE_619835 Chr12 17951984 17951985 - AMYLTP 383 0.0017 (5/2969) 0 * Os_TE_619836 Os_TE_619832 Chr12 17950769 17950768 - DS-RICE2N 613 0.0004 (1/2772) 0 * * Os_TE_619826 Chr12 17950341 17950342 - TEMPINDAS 4259 0.0086 (23/2682) 0 * * Os_TE_619813 Chr12 17949356 17949357 - OSTE33 1012 0.0330 (94/2852) 0 * * Os_TE_619807 Chr12 17948445 17948446 + AMYLTP 383 0.0511 (146/2857) 0 * * Os_TE_619800 Chr12 17944601 17944847 + STOWAWAY51_OS 246 0.7369 (2075/2816) 1 Intact * Os_TE_619775 Chr12 17937768 17937769 + OLO24 345 0.0007 (2/2908) 0 * * Os_TE_619768 Chr12 17937262 17937261 - NDNA1TNA_OS 334 0.0017 (5/2946) 0 * * Os_TE_619753 Chr12 17931679 17931678 + TWIFB1 3737 0.0020 (6/2948) 0 * * Os_TE_619746 Chr12 17929807 17929806 - ORSgTEMT02400246 177 0.0431 (114/2642) 0 * Os_TE_619745 Os_TE_619745 Chr12 17929806 17929807 - TYPEM 227 0.0400 (118/2952) 0 * Os_TE_619746 Os_TE_619728 Chr12 17924048 17924047 + ORSgTETNOOT02406 265 0.2167 (624/2879) 0 * * Os_TE_619727 Chr12 17923939 17923940 - RIRE2_LTR 11306 0.0295 (88/2984) 0 * Os_TE_619726 Os_TE_619726 Chr12 17923935 17923934 - ORSgTERT00201216 11284 0.0302 (90/2985) 0 * Os_TE_619727 Os_TE_619722 Chr12 17923523 17923524 - GYPSY-A_LTR 8951 0.0251 (74/2947) 0 * Os_TE_619721 Os_TE_619721 Chr12 17923519 17923518 + GYPSY-A_LTR 8951 0.0254 (68/2681) 0 * Os_TE_619722 Os_TE_619719 Chr12 17922861 17922862 - AMYLTP 383 0.0014 (4/2917) 0 * Os_TE_619718 Os_TE_619718 Chr12 17922853 17922852 + AMYLTP 383 0.0014 (4/2912) 0 * Os_TE_619719 Os_TE_619705 Chr12 17920383 17920384 - NDNA1TNA_OS 334 0.0321 (96/2993) 0 * Os_TE_619704 Os_TE_619704 Chr12 17920382 17920381 + NDNA1TNA_OS 334 0.0327 (98/2993) 0 * Os_TE_619705 Os_TE_619691 Chr12 17918309 17918310 + CASTAWAY-3 314 0.0564 (166/2945) 0 * * Os_TE_619687 Chr12 17916005 17916006 - COPI2_LTR 4733 0.0030 (9/2978) 0 * * Os_TE_619664 Chr12 17910000 17909999 + RETRO2A_LTR 12895 0.0847 (239/2823) 0 * * Os_TE_619661 Chr12 17909075 17909076 + SZ-67LTR 1540 0.0014 (4/2917) 0 * Os_TE_619660 Os_TE_619660 Chr12 17909071 17909070 - SZ-67LTR 1540 0.0017 (5/2919) 0 * Os_TE_619661 Os_TE_619637 Chr12 17899999 17899998 + ORSgTEMT02900076 336 0.2569 (764/2974) 0 * Os_TE_619636 Os_TE_619636 Chr12 17899993 17899994 + ORSgTEMT01701224 156 0.2526 (749/2965) 0 * Os_TE_619637 Os_TE_619633 Chr12 17899839 17899591 + ORSgTEMT00900471 260 0.7552 (2249/2978) 1 Intact * Os_TE_619630 Chr12 17899613 17899614 + TRUNCATOR 2918 0.0120 (28/2340) 0 * * Os_TE_619628 Chr12 17899591 17899839 + ORSgTEMT00900388 252 0.8105 (2254/2781) 1 Intact * Os_TE_619626 Chr12 17899463 17899464 - TRUNCATOR 2918 0.0104 (31/2977) 0 * * Os_TE_619624 Chr12 17899294 17899295 + AMYLTP 383 0.0127 (38/2981) 0 * Os_TE_619623 Os_TE_619623 Chr12 17899286 17899285 - AMYLTP 383 0.0134 (40/2981) 0 * Os_TE_619624 Os_TE_619621 Chr12 17897907 17897908 - ORSgTETN00200001 10994 0.0116 (26/2234) 0 * Os_TE_619620 Os_TE_619620 Chr12 17897900 17897899 - ORSgTEMT02600002 356 0.2414 (698/2892) 0 * Os_TE_619621 Os_TE_619619 Chr12 17897897 17897898 - ORSgTEMT00101174 225 0.2098 (590/2812) 0 * * Os_TE_619617 Chr12 17897839 17897838 - TYPEU1 380 0.0018 (5/2805) 0 * * Os_TE_619616 Chr12 17897812 17897813 - ORSgTETN00200001 10994 0.0007 (2/2806) 0 * Os_TE_619615 Os_TE_619615 Chr12 17897810 17897809 + SPMLIKE 10989 0.0011 (3/2712) 0 * Os_TE_619616 Os_TE_619614 Chr12 17897753 17897752 - ORSgTEMT01400022 212 0.1728 (466/2697) 0 * * Os_TE_619613 Chr12 17897751 17897752 - MuDR2_OS 6770 0.0132 (38/2871) 0 * Os_TE_619612 Os_TE_619612 Chr12 17897742 17897741 + MuDR2_OS 6770 0.0174 (39/2243) 0 * Os_TE_619613 Os_TE_619603 Chr12 17896450 17896451 - COPIA2-LTR_OS 6433 0.2606 (771/2958) 0 * Os_TE_619602 Os_TE_619602 Chr12 17896446 17896445 + COPIA2-LTR_OS 6433 0.2474 (725/2931) 0 * Os_TE_619603 Os_TE_619601 Chr12 17896339 17896340 + ORSgTEMT00500201 140 0.2616 (775/2962) 0 * * Os_TE_619600 Chr12 17896285 17896286 + ORSiCMCM00100019 2717 0.0044 (13/2939) 0 * Os_TE_619599 Os_TE_619599 Chr12 17896281 17896280 - TRUNCATOR2_LTR 2904 0.0047 (14/2959) 0 * Os_TE_619600 Os_TE_619598 Chr12 17895983 17895984 - ORSgTERT00201216 11284 0.0010 (2/2087) 0 * Os_TE_619597 Os_TE_619597 Chr12 17895979 17895978 - RIRE2_LTR 11306 0.0011 (3/2677) 0 * Os_TE_619598 Os_TE_619557 Chr12 17871667 17871668 - OSR3_LTR 5201 0.0017 (3/1780) 0 * Os_TE_619556 Os_TE_619556 Chr12 17871663 17871662 + OSR3_LTR 5201 0.0017 (3/1775) 0 * Os_TE_619557 Os_TE_619555 Chr12 17871493 17871494 + RIREX_LTR 8828 0.0011 (2/1782) 0 * Os_TE_619554 Os_TE_619554 Chr12 17871489 17871488 - RIREX_LTR 8828 0.0011 (2/1779) 0 * Os_TE_619555 Os_TE_619553 Chr12 17870405 17870406 - COPIA2-LTR_OS 6433 0.0011 (2/1804) 0 * Os_TE_619552 Os_TE_619552 Chr12 17870401 17870400 + COPIA2-LTR_OS 6433 0.0011 (2/1807) 0 * Os_TE_619553 Os_TE_619550 Chr12 17867753 17867752 + TRUNCATOR 2918 0.0114 (19/1664) 0 * * Os_TE_619486 Chr12 17845630 17845631 + RIRE3A_LTR 10580 0.0034 (5/1491) 0 * Os_TE_619485 Os_TE_619485 Chr12 17845626 17845625 - RIRE3A_LTR 10580 0.0033 (5/1494) 0 * Os_TE_619486 Os_TE_619478 Chr12 17842455 17842456 + SZ-62LTR 3649 0.0595 (88/1478) 0 * * Os_TE_619477 Chr12 17842451 17842450 - Cassandra_OS-LTR 764 0.0006 (1/1810) 0 * * Os_TE_619446 Chr12 17827562 17827561 - ORSgTEMT06000292 191 0.0061 (8/1306) -1 * * Os_TE_619436 Chr12 17825746 17825747 - CACTA-H 1152 0.0094 (14/1487) 0 * * Os_TE_619426 Chr12 17822613 17822614 + OLO24 345 0.0061 (9/1469) 0 * Os_TE_619425 Os_TE_619425 Chr12 17822611 17822610 - OLO24 345 0.0055 (8/1463) 0 * Os_TE_619426 Os_TE_619350 Chr12 17795247 17795248 + DS-RICE4N 715 0.0017 (3/1782) 0 * * Os_TE_619335 Chr12 17789831 17789830 + SINE03_OS 360 0.0017 (5/2992) 0 * * Os_TE_619333 Chr12 17787101 17787102 - AMYLTP 383 0.0010 (3/2973) 0 * * Os_TE_619332 Chr12 17787016 17787017 - TRUNCATOR2_LTR 2904 0.1706 (501/2936) 0 * Os_TE_619331 Os_TE_619331 Chr12 17787012 17787011 + ORSiCMCM00100019 2717 0.1725 (508/2945) 0 * Os_TE_619332 Os_TE_619330 Chr12 17786917 17786659 + ORSgTETNOOT00670 249 0.3910 (821/2100) 1 Intact Os_TE_619327 Os_TE_619327 Chr12 17786659 17786917 + ORSgTETNOOT01583 259 0.2612 (704/2695) 1 Intact Os_TE_619330 Os_TE_619323 Chr12 17785768 17785767 + ORSgTEMT00501204 149 0.3876 (1028/2652) 0 * * Os_TE_619321 Chr12 17785529 17785530 + SPMLIKE 10989 0.0394 (116/2946) 0 * Os_TE_619320 Os_TE_619320 Chr12 17785527 17785526 - ORSgTETN00200001 10994 0.0394 (117/2969) 0 * Os_TE_619321 Os_TE_619314 Chr12 17783760 17783761 + ENSPM4_OS 11610 0.0003 (1/2911) 0 * * Os_TE_619313 Chr12 17783250 17783251 - ORSgTEMT00502363 147 0.0018 (3/1709) 0 * * Os_TE_619309 Chr12 17782819 17782820 + CACTA-B 1103 0.0010 (3/2913) 0 * * Os_TE_619279 Chr12 17703049 17703050 + ORSgTEMT01701591 154 0.0012 (2/1604) 0 * * Os_TE_619254 Chr12 17691025 17691026 - SC-3_LTR 5748 0.0007 (2/2975) 0 * * Os_TE_619251 Chr12 17688394 17688395 - SC-8_LTR 4951 0.0007 (2/2943) 0 * Os_TE_619250 Os_TE_619250 Chr12 17688390 17688389 + SC-8_LTR 4951 0.0007 (2/2978) 0 * Os_TE_619251 Os_TE_619238 Chr12 17685680 17685525 - ORSgTEMT01701882 154 0.8582 (2529/2947) 1 Intact Os_TE_619237 Os_TE_619237 Chr12 17685532 17685677 + ORSgTEMT01701265 147 0.8606 (2538/2949) 1 Intact Os_TE_619238 Os_TE_619232 Chr12 17683961 17683960 - NDNA2TNA_OS 346 0.0007 (2/2903) 0 * * Os_TE_619227 Chr12 17683810 17683811 - ORSgTEMT01400014 209 0.3837 (835/2176) 0 * * Os_TE_619226 Chr12 17683779 17683778 - MuDR4_OS 7610 0.1496 (321/2146) 0 * Os_TE_619224 Os_TE_619224 Chr12 17683768 17683769 - MuDR4_OS 7610 0.1090 (323/2964) 0 * Os_TE_619226 Os_TE_619223 Chr12 17683667 17683668 - COWARD 200 0.0010 (3/2970) 0 * * Os_TE_619211 Chr12 17680997 17680996 + RIRE2_LTR 11306 0.0370 (110/2969) 0 * * Os_TE_619210 Chr12 17680791 17680792 - MDR2 6967 0.0003 (1/2925) 0 * Os_TE_619209 Os_TE_619209 Chr12 17680782 17680781 + MDR2 6967 0.0003 (1/2977) 0 * Os_TE_619210 Os_TE_619193 Chr12 17669470 17669471 + CPSC3_LTR 5175 0.0057 (17/2982) 0 * * Os_TE_619190 Chr12 17668780 17668781 + ORSiTERTOOT00350 5275 0.0010 (3/2977) 0 * Os_TE_619189 Os_TE_619189 Chr12 17668776 17668775 - ORSiTERTOOT00350 5275 0.0017 (5/2971) 0 * Os_TE_619190 Os_TE_619183 Chr12 17666538 17666537 - ORSgTERT00201216 11284 0.0036 (10/2759) 0 * * Os_TE_619174 Chr12 17662672 17662671 + MuDR2_OS 6770 0.0368 (50/1358) 0 * Os_TE_619173 Os_TE_619173 Chr12 17662671 17662672 - MuDR2_OS 6770 0.0395 (54/1367) 0 * Os_TE_619174 Os_TE_619172 Chr12 17662584 17662585 - MuDR2_OS 6770 0.1784 (244/1368) 0 * Os_TE_619171 Os_TE_619171 Chr12 17662578 17662577 + MuDR2_OS 6770 0.1782 (242/1358) 0 * Os_TE_619172 Os_TE_619168 Chr12 17660718 17660717 + COPIA2-LTR_OS 6433 0.0344 (66/1919) 0 * * Os_TE_619164 Chr12 17659869 17659870 + RETROSAT2LTRA 3112 0.0282 (39/1384) 0 * Os_TE_619163 Os_TE_619163 Chr12 17659865 17659864 - RETROSAT3_LTR 11537 0.0311 (43/1381) 0 * Os_TE_619164 Os_TE_619162 Chr12 17659645 17659646 + RETROSAT2LTR 12796 0.1754 (238/1357) 0 * Os_TE_619161 Os_TE_619161 Chr12 17659643 17659642 - RETROSAT2LTR 12796 0.1881 (262/1393) 0 * Os_TE_619162 Os_TE_619160 Chr12 17658548 17658549 + RETROSAT2LTR 12796 0.0072 (10/1396) 0 * Os_TE_619159 Os_TE_619159 Chr12 17658546 17658545 - RETROSAT2LTR 12796 0.0086 (12/1392) 0 * Os_TE_619160 Os_TE_619153 Chr12 17657713 17657712 - RIREX_LTR 8828 0.0020 (6/2953) 0 * * Os_TE_619148 Chr12 17655201 17655202 + SEVERIN-2 1952 0.0003 (1/2972) 0 * * Os_TE_619147 Chr12 17655198 17655197 - SEVERIN-2 1952 0.0166 (49/2955) 0 * * Os_TE_619146 Chr12 17655006 17655007 + SEVERIN-2 1952 0.0114 (34/2970) 0 * * Os_TE_619145 Chr12 17654629 17654630 + RIRE2_LTR 11306 0.0444 (132/2972) 0 * Os_TE_619144 Os_TE_619144 Chr12 17654625 17654624 - RIRE2_LTR 11306 0.0451 (134/2973) 0 * Os_TE_619145 Os_TE_619142 Chr12 17653956 17653955 - RETROSAT2LTRA 3112 0.0003 (1/2991) 0 * * Os_TE_619124 Chr12 17651013 17651012 + TRUNCATOR 2918 0.0159 (47/2950) 0 * Os_TE_619123 Os_TE_619123 Chr12 17651012 17651013 - TRUNCATOR 2918 0.0164 (48/2930) 0 * Os_TE_619124 Os_TE_619120 Chr12 17650721 17650722 + ORSiTERT00200145 12238 0.0275 (67/2437) 0 * * Os_TE_619116 Chr12 17649904 17649903 - RETRO1_LTR 8314 0.0051 (15/2922) 0 * * Os_TE_619109 Chr12 17647911 17647910 + MERMITEB 1610 0.0007 (2/2938) 0 * * Os_TE_619107 Chr12 17646784 17646785 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_619106 Os_TE_619106 Chr12 17646780 17646779 - COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_619107 Os_TE_619099 Chr12 17645117 17645116 + NDNA1TNA_OS 334 0.0390 (112/2871) 0 * Os_TE_619098 Os_TE_619098 Chr12 17645116 17645117 - NDNA1TNA_OS 334 0.0410 (113/2753) 0 * Os_TE_619099 Os_TE_619097 Chr12 17644368 17644367 + TRUNCATOR 2918 0.0836 (244/2917) 0 * * Os_TE_619074 Chr12 17642408 17642409 + SPMLIKE 10989 0.0408 (120/2943) 0 * Os_TE_619073 Os_TE_619073 Chr12 17642406 17642405 - ORSgTETN00200001 10994 0.0388 (114/2940) 0 * Os_TE_619074 Os_TE_619071 Chr12 17641757 17641756 + SEVERIN-2 1952 0.0044 (13/2947) 0 * * Os_TE_619066 Chr12 17641460 17641459 - TYPEM 227 0.0003 (1/2943) 0 * * Os_TE_619065 Chr12 17641134 17641135 - COPIA2-LTR_OS 6433 0.0003 (1/2947) 0 * Os_TE_619064 Os_TE_619064 Chr12 17641130 17641129 + COPIA2-LTR_OS 6433 0.0003 (1/2942) 0 * Os_TE_619065 Os_TE_619062 Chr12 17641001 17641000 - RIRE2_LTR 11306 0.0264 (78/2955) 0 * * Os_TE_619061 Chr12 17640715 17640714 + ORSgTEMT00501279 126 0.0007 (2/2954) 0 * * Os_TE_619059 Chr12 17639271 17639272 - RETRO1_LTR 8314 0.0118 (4/340) -1 * * Os_TE_619057 Chr12 17639180 17639179 + EnSpm-10_OS 11265 0.0004 (1/2737) 0 * * Os_TE_619056 Chr12 17638511 17638510 + SEVERIN-2 1952 0.0061 (18/2969) 0 * * Os_TE_619054 Chr12 17638196 17638197 - RIREX_LTR 8828 0.0102 (29/2841) 0 * Os_TE_619053 Os_TE_619053 Chr12 17638192 17638191 + RIREX_LTR 8828 0.0091 (26/2849) 0 * Os_TE_619054 Os_TE_619046 Chr12 17637301 17637302 + INDITTO 263 0.0007 (2/2960) 0 * Os_TE_619045 Os_TE_619045 Chr12 17637299 17637298 - INDITTO 263 0.0007 (2/2959) 0 * Os_TE_619046 Os_TE_619023 Chr12 17635271 17634939 - NDNA1TNA_OS 334 0.1420 (387/2726) 1 Intact Os_TE_619022 Os_TE_619022 Chr12 17634937 17635271 + NDNA1TNA_OS 334 0.1260 (339/2690) 1 Intact Os_TE_619023 Os_TE_619018 Chr12 17634518 17634517 + CASTAWAY 364 0.0060 (16/2677) 0 * * Os_TE_619017 Chr12 17634166 17634167 - RIRE2_LTR 11306 0.0265 (78/2946) 0 * Os_TE_619016 Os_TE_619016 Chr12 17634162 17634161 - ORSgTERT00201216 11284 0.0268 (79/2953) 0 * Os_TE_619017 Os_TE_619014 Chr12 17633606 17633607 + RIREX_LTR 8828 0.0085 (25/2937) 0 * Os_TE_619013 Os_TE_619013 Chr12 17633602 17633601 - RIREX_LTR 8828 0.0075 (22/2931) 0 * Os_TE_619014 Os_TE_619012 Chr12 17633467 17633468 + ORSgTEMT01601934 207 0.0010 (3/2867) 0 * * Os_TE_619011 Chr12 17633302 17633303 + RIREX_LTR 8828 0.0004 (1/2824) 0 * Os_TE_619010 Os_TE_619010 Chr12 17633298 17633297 - RIREX_LTR 8828 0.0004 (1/2823) 0 * Os_TE_619011 Os_TE_618995 Chr12 17626579 17626580 + SC-8_LTR 4951 0.0003 (1/2983) 0 * Os_TE_618994 Os_TE_618994 Chr12 17626575 17626574 - SC-8_LTR 4951 0.0003 (1/2984) 0 * Os_TE_618995 Os_TE_618993 Chr12 17626071 17626072 - SC-8_LTR 4951 0.0003 (1/2988) 0 * Os_TE_618992 Os_TE_618992 Chr12 17626067 17626066 + SC-8_LTR 4951 0.0003 (1/2986) 0 * Os_TE_618993 Os_TE_618991 Chr12 17624611 17624612 + RIREX_LTR 8828 0.0007 (2/2986) 0 * Os_TE_618990 Os_TE_618990 Chr12 17624607 17624606 - RIREX_LTR 8828 0.0007 (2/2987) 0 * Os_TE_618991 Os_TE_618978 Chr12 17615963 17615962 - SC-8_LTR 4951 0.0003 (1/2963) 0 * * Os_TE_618975 Chr12 17615154 17615153 + ORSiTERTOOT00296 5553 0.0003 (1/2980) 0 * * Os_TE_618974 Chr12 17614819 17614820 - SC-8_LTR 4951 0.0003 (1/2988) 0 * Os_TE_618973 Os_TE_618973 Chr12 17614815 17614814 + SC-8_LTR 4951 0.0003 (1/2986) 0 * Os_TE_618974 Os_TE_618970 Chr12 17612310 17612311 + GYPSY-A_LTR 8951 0.0004 (1/2496) 0 * * Os_TE_618968 Chr12 17612157 17612158 + NDNA1TNA_OS 334 0.0003 (1/2925) 0 * * Os_TE_618955 Chr12 17610388 17610389 + RETRO1_LTR 8314 0.0055 (16/2896) 0 * Os_TE_618954 Os_TE_618954 Chr12 17610384 17610383 - RETRO1_LTR 8314 0.0055 (16/2899) 0 * Os_TE_618955 Os_TE_618941 Chr12 17607812 17607811 - ORSiTERT00100062 5674 0.0017 (5/2988) 0 * * Os_TE_618939 Chr12 17606768 17606769 + F569 228 0.0010 (3/2957) 0 * * Os_TE_618928 Chr12 17604730 17604729 + RETRO2_LTR 12874 0.0541 (143/2642) 0 * * Os_TE_618919 Chr12 17603414 17603415 - COPIA2-LTR_OS 6433 0.0020 (6/2973) 0 * * Os_TE_618885 Chr12 17598133 17598132 - ORSgTEMT01600639 228 0.0003 (1/2957) 0 * * Os_TE_618879 Chr12 17597082 17597081 - ORSgTEMT01600639 228 0.0004 (1/2709) 0 * * Os_TE_618874 Chr12 17596392 17596393 + ORSgTETNOOT01668 244 0.0139 (41/2954) 0 * * Os_TE_618873 Chr12 17596317 17596318 - SZ-40LTR 2465 0.0423 (126/2979) 0 * Os_TE_618872 Os_TE_618872 Chr12 17596313 17596312 + SZ-40LTR 2465 0.0409 (122/2983) 0 * Os_TE_618873 Os_TE_618871 Chr12 17596063 17596062 - RIREX_LTR 8828 0.0065 (16/2448) 0 * * Os_TE_618865 Chr12 17588788 17588789 + RIREX_LTR 8828 0.0061 (18/2963) -1 * * Os_TE_618857 Chr12 17580308 17580307 - CLOUD 734 0.3968 (1173/2956) 0 * * Os_TE_618855 Chr12 17580299 17580300 - RIRE2_LTR 11306 0.0258 (76/2947) 0 * * Os_TE_618854 Chr12 17579888 17579889 + ORSgTEMT00101532 332 0.0003 (1/2969) 0 * * Os_TE_618849 Chr12 17578700 17578699 + ORSgTEMT00300044 390 0.0044 (13/2988) 0 * * Os_TE_618812 Chr12 17568869 17568868 + RETRO2A_LTR 12895 0.0525 (155/2953) 0 * * Os_TE_618795 Chr12 17566641 17566642 - RETRO1_LTR 8314 0.0041 (12/2951) 0 * Os_TE_618794 Os_TE_618794 Chr12 17566637 17566636 + RETRO2A_LTR 12895 0.0041 (12/2946) 0 * Os_TE_618795 Os_TE_618793 Chr12 17565768 17565769 - MuDR4_OS 7610 0.0003 (1/2994) 0 * * Os_TE_618790 Chr12 17564575 17564574 + JOUZHENA 607 0.5546 (1543/2782) 0 * Os_TE_618789 Os_TE_618789 Chr12 17564574 17564575 - JOUZHENA 607 0.5419 (1488/2746) 0 * Os_TE_618790 Os_TE_618788 Chr12 17563501 17563502 - DS-RICE2N 613 0.6340 (821/1295) 0 * Os_TE_618787 Os_TE_618787 Chr12 17563494 17563493 + DS-RICE4N 715 0.2821 (779/2761) 0 * Os_TE_618788 Os_TE_618785 Chr12 17561679 17561680 + STOWAWAY11_OS 292 0.0004 (1/2224) -1 * * Os_TE_618769 Chr12 17555249 17555250 - SC-8_LTR 4951 0.0225 (67/2984) 0 * Os_TE_618768 Os_TE_618768 Chr12 17555245 17555244 + ORSiTERTOOT00381 4988 0.0226 (67/2967) 0 * Os_TE_618769 Os_TE_618731 Chr12 17533579 17532622 - COPIA2-LTR_OS 6433 0.1004 (295/2937) 1 Solo_LTR * Os_TE_618723 Chr12 17531341 17531342 - ORSgTEMT00101174 225 0.0770 (213/2766) 0 * * Os_TE_618722 Chr12 17530600 17530601 + COPI2_LTR 4733 0.0003 (1/2926) 0 * Os_TE_618721 Os_TE_618721 Chr12 17530596 17530595 - COPI2_LTR 4733 0.0003 (1/2904) 0 * Os_TE_618722 Os_TE_618697 Chr12 17528923 17528924 - ORSgTEMT00900099 250 0.2987 (858/2872) 0 * * Os_TE_618694 Chr12 17528819 17528562 + ORSgTETNOOT01583 259 0.7198 (2088/2901) 1 Intact Os_TE_618689 Os_TE_618689 Chr12 17528562 17528819 - STOWAWAY17_OS 259 0.7239 (2116/2923) 1 Intact Os_TE_618694 Os_TE_618686 Chr12 17528430 17528429 + ORSgTETNOOT00670 249 0.0003 (1/2902) 0 * * Os_TE_618676 Chr12 17525940 17525680 + ORSgTETNOOT00792 273 0.6344 (1848/2913) 1 Intact Os_TE_618673 Os_TE_618673 Chr12 17525680 17525937 + ORSgTETNOOT01128 258 0.6356 (1767/2780) 1 Intact Os_TE_618676 Os_TE_618664 Chr12 17524243 17524987 - ORSgTEMT01701348 105 0.6233 (1643/2636) 1 Intact * Os_TE_618660 Chr12 17522722 17522905 + OsSN3 183 0.6441 (1913/2970) 1 Intact * Os_TE_618658 Chr12 17519665 17519666 - HATOS1 3488 0.0405 (121/2986) 0 * Os_TE_618657 Os_TE_618657 Chr12 17519658 17519657 + HATOS1 3488 0.0385 (115/2984) 0 * Os_TE_618658 Os_TE_618656 Chr12 17519549 17519548 - ORSiTETNOOT00107 906 0.0003 (1/2979) 0 * * Os_TE_618646 Chr12 17513914 17513915 + RETRO2_LTR 12874 0.0150 (45/2993) 0 * Os_TE_618645 Os_TE_618645 Chr12 17513910 17513909 - RETRO2_LTR 12874 0.0147 (44/2995) 0 * Os_TE_618646 Os_TE_618642 Chr12 17512403 17512404 - RIRE2_LTR 11306 0.0013 (4/2993) 0 * Os_TE_618641 Os_TE_618641 Chr12 17512399 17512398 - ORSgTERT00201216 11284 0.0013 (4/2992) 0 * Os_TE_618642 Os_TE_618590 Chr12 17500732 17500733 + SZ-9LTR 965 0.0170 (45/2643) 0 * Os_TE_618589 Os_TE_618589 Chr12 17500728 17500727 - SZ-9LTR 965 0.0170 (45/2649) 0 * Os_TE_618590 Os_TE_618588 Chr12 17500396 17500397 + ORSiTERTOOT00367 5639 0.0373 (99/2657) 0 * Os_TE_618587 Os_TE_618587 Chr12 17500392 17500391 - ORSiTERTOOT00367 5639 0.0380 (101/2659) 0 * Os_TE_618588 Os_TE_618586 Chr12 17500232 17500231 + TRUNCATOR 2918 0.0565 (158/2798) 0 * * Os_TE_618584 Chr12 17499929 17499930 + RETROSAT2LTR 12796 0.5048 (1468/2908) 0 * * Os_TE_618579 Chr12 17499209 17499210 + OSTONOR1_LTR 6440 0.0150 (43/2867) 0 * Os_TE_618578 Os_TE_618578 Chr12 17499205 17499204 - OSTONOR1_LTR 6440 0.0157 (45/2870) 0 * Os_TE_618579 Os_TE_618575 Chr12 17497937 17497938 + RIREX_LTR 8828 0.0007 (2/2862) 0 * * Os_TE_618573 Chr12 17497463 17497462 - SEVERIN-2 1952 0.0555 (155/2794) 0 * * Os_TE_618553 Chr12 17486524 17486523 - ORSiTERT00200154 9386 0.0003 (1/2931) 0 * * Os_TE_618551 Chr12 17485360 17485190 - F804 170 0.6380 (1898/2975) 1 Intact Os_TE_618550 Os_TE_618550 Chr12 17485189 17485360 + F804 170 0.6340 (1874/2956) 1 Intact Os_TE_618551 Os_TE_618542 Chr12 17483528 17483529 - TRUNCATOR2_LTR 2904 0.0417 (123/2951) 0 * Os_TE_618541 Os_TE_618541 Chr12 17483524 17483523 + TRUNCATOR2_LTR 2904 0.0411 (121/2946) 0 * Os_TE_618542 Os_TE_618540 Chr12 17483359 17483358 + ORSgTEMT01702111 154 0.3297 (964/2924) 0 * Os_TE_618539 Os_TE_618539 Chr12 17483356 17483357 + ORSgTEMT01701591 154 0.3350 (988/2949) 0 * Os_TE_618540 Os_TE_618538 Chr12 17483261 17483260 - TYPEM 227 0.0551 (161/2924) 0 * Os_TE_618537 Os_TE_618537 Chr12 17483260 17483261 + ORSgTEMT02400206 225 0.0562 (165/2938) 0 * Os_TE_618538 Os_TE_618532 Chr12 17482519 17479087 - SEVERIN-2 1952 0.0344 (95/2765) -1 Intact * Os_TE_618527 Chr12 17478613 17478614 + ORSiTERTOOT00381 4988 0.3388 (1013/2990) 0 * Os_TE_618526 Os_TE_618526 Chr12 17478609 17478608 - SC-8_LTR 4951 0.3399 (1017/2992) 0 * Os_TE_618527 Os_TE_618525 Chr12 17478196 17478197 + EnSpm-10_OS 11265 0.0003 (1/2877) 0 * * Os_TE_618517 Chr12 17475570 17475571 - RIREX_LTR 8828 0.0015 (4/2622) 0 * Os_TE_618516 Os_TE_618516 Chr12 17475566 17475565 + RIREX_LTR 8828 0.0015 (4/2593) 0 * Os_TE_618517 Os_TE_618515 Chr12 17475544 17475543 - TRUNCATOR 2918 0.0062 (16/2572) 0 * Os_TE_618514 Os_TE_618514 Chr12 17475543 17475544 + TRUNCATOR 2918 0.0080 (21/2625) 0 * Os_TE_618515 Os_TE_618513 Chr12 17475487 17475486 + CACTA-B 1103 0.3815 (1003/2629) 0 * Os_TE_618512 Os_TE_618512 Chr12 17475483 17475484 - CACTA-B 1103 0.3617 (930/2571) 0 * Os_TE_618513 Os_TE_618499 Chr12 17469040 17469041 - AMYLTP 383 0.2911 (577/1982) 0 * Os_TE_618498 Os_TE_618498 Chr12 17469033 17469032 + AMYLTP 383 0.0801 (193/2409) 0 * Os_TE_618499 Os_TE_618496 Chr12 17468484 17468485 + SPMLIKE 10989 0.0438 (131/2991) 0 * * Os_TE_618487 Chr12 17466740 17466739 - DS-RICE2N 613 0.0067 (19/2852) 0 * * Os_TE_618480 Chr12 17464614 17464613 - RIREX_LTR 8828 0.0003 (1/2953) 0 * * Os_TE_618476 Chr12 17463166 17463165 + ORSgTEMT01700848 148 0.0160 (29/1807) 0 * * Os_TE_618475 Chr12 17462488 17462489 + SZ-44LTR 1408 0.3282 (978/2980) 0 * Os_TE_618474 Os_TE_618474 Chr12 17462484 17462483 - SZ-44LTR 1408 0.3320 (993/2991) 0 * Os_TE_618475 Os_TE_618472 Chr12 17461818 17446523 - TRUNCATOR2_LTR 2904 0.6290 (1490/2369) 1 Intact Os_TE_618459 Os_TE_618459 Chr12 17446523 17461818 + TRUNCATOR2_LTR 2904 0.6019 (1497/2487) 1 Intact Os_TE_618472 Os_TE_618457 Chr12 17446400 17446399 - SZ-40LTR 2465 0.0568 (170/2995) 0 * * Os_TE_618456 Chr12 17445549 17445550 - RETRO1_LTR 8314 0.0241 (72/2992) 0 * Os_TE_618455 Os_TE_618455 Chr12 17445545 17445544 + RETRO2A_LTR 12895 0.0240 (72/2994) 0 * Os_TE_618456 Os_TE_618453 Chr12 17444740 17444741 + SEVERIN-2 1952 0.0003 (1/2951) 0 * * Os_TE_618451 Chr12 17444211 17444210 - RIREX_LTR 8828 0.0127 (38/2992) 0 * * Os_TE_618448 Chr12 17443916 17443915 - SZ-22_LTR 4403 0.3358 (1002/2984) 0 * * Os_TE_618442 Chr12 17442891 17442633 - STOWAWAY10_OS 259 0.1568 (407/2595) 1 Intact Os_TE_618441 Os_TE_618441 Chr12 17442631 17442893 - ORSgTEMT00101174 225 0.2503 (720/2877) 1 Intact Os_TE_618442 Os_TE_618440 Chr12 17441871 17441870 - AMYLTP 383 0.0064 (19/2981) 0 * * Os_TE_618417 Chr12 17435641 17427016 - COPIA1-LTR_OS 9292 0.2700 (775/2870) 1 Intact Os_TE_618409 Os_TE_618409 Chr12 17426915 17435641 + SZ-5LTR 1223 0.2550 (764/2996) 1 Intact Os_TE_618417 Os_TE_618407 Chr12 17426030 17426031 - RIREX_LTR 8828 0.0017 (5/2991) 0 * Os_TE_618406 Os_TE_618406 Chr12 17426026 17426025 + RIREX_LTR 8828 0.0017 (5/2978) 0 * Os_TE_618407 Os_TE_618392 Chr12 17417647 17417648 - SC-3_LTR 5748 0.0003 (1/2998) 0 * Os_TE_618391 Os_TE_618391 Chr12 17417643 17417642 + ORSiTERTOOT00296 5553 0.0003 (1/2997) 0 * Os_TE_618392 Os_TE_618387 Chr12 17415194 17415195 - COPIA2-LTR_OS 6433 0.0145 (43/2958) 0 * Os_TE_618386 Os_TE_618386 Chr12 17415190 17415189 + COPIA2-LTR_OS 6433 0.0135 (40/2957) 0 * Os_TE_618387 Os_TE_618379 Chr12 17414523 17414522 + NDNA1TNA_OS 334 0.0045 (13/2887) 0 * * Os_TE_618370 Chr12 17413982 17413983 - ORSgTEMT00901408 244 0.0752 (222/2954) 0 * * Os_TE_618369 Chr12 17412922 17412923 - TOURIST-XV 239 0.0745 (223/2995) 0 * * Os_TE_618365 Chr12 17411156 17411157 - SC-8_LTR 4951 0.0024 (7/2976) 0 * * Os_TE_618360 Chr12 17409854 17409853 + ORSiTERTOOT00296 5553 0.0004 (1/2714) 0 * * Os_TE_618357 Chr12 17406699 17406698 + TREP220 109 0.0734 (220/2997) 0 * Os_TE_618356 Os_TE_618356 Chr12 17406696 17406697 + STOWAWAY47_OS 148 0.0592 (175/2958) 0 * Os_TE_618357 Os_TE_618349 Chr12 17404607 17404608 + ORSgTEMT01601122 212 0.5288 (1517/2869) 0 * * Os_TE_618347 Chr12 17404570 17404569 - TEMPINDAS 4259 0.0004 (1/2691) 0 * * Os_TE_618340 Chr12 17401512 17401511 - SZ-22_LTR 4403 0.0003 (1/2968) 0 * * Os_TE_618338 Chr12 17400538 17400539 + MUDRN1_OS 764 0.0037 (11/2986) 0 * * Os_TE_618336 Chr12 17400330 17400329 + ORSgTEMT00101583 342 0.6579 (1940/2949) 0 * * Os_TE_618333 Chr12 17399942 17400097 - TNR2 157 0.3637 (1079/2967) 1 Intact * Os_TE_618332 Chr12 17399085 17399086 - RIREX_LTR 8828 0.0007 (2/2942) 0 * Os_TE_618331 Os_TE_618331 Chr12 17399081 17399080 + RIREX_LTR 8828 0.0007 (2/2921) 0 * Os_TE_618332 Os_TE_618330 Chr12 17398759 17398760 + AMYLTP 383 0.0038 (9/2393) 0 * * Os_TE_618327 Chr12 17398148 17398149 - F569 228 0.0003 (1/2973) 0 * Os_TE_618326 Os_TE_618326 Chr12 17398146 17398145 + F569 228 0.0003 (1/2969) 0 * Os_TE_618327 Os_TE_618310 Chr12 17396003 17395641 - ORSgTEMT00600524 364 0.6938 (1969/2838) 1 Intact * Os_TE_618304 Chr12 17394935 17394936 + RETRO2A_LTR 12895 0.0017 (5/2962) 0 * * Os_TE_618303 Chr12 17394284 17394285 - RIREX_LTR 8828 0.0007 (2/2784) 0 * Os_TE_618302 Os_TE_618302 Chr12 17394280 17394279 + RIREX_LTR 8828 0.0007 (2/2939) 0 * Os_TE_618303 Os_TE_618299 Chr12 17393688 17393689 - ORSgTETNOOT00118 134 0.0210 (62/2950) 0 * Os_TE_618298 Os_TE_618298 Chr12 17393686 17393685 + ORSgTETNOOT01930 140 0.0199 (58/2910) 0 * Os_TE_618299 Os_TE_618286 Chr12 17389747 17389748 + CACTA-B 1103 0.1283 (377/2938) 0 * * Os_TE_618274 Chr12 17385353 17389322 + SEVERIN-2 1952 0.6337 (1827/2883) 1 Intact * Os_TE_618273 Chr12 17385110 17385111 - ORSgTETN00200001 10994 0.0362 (108/2982) 0 * Os_TE_618272 Os_TE_618272 Chr12 17385108 17385107 + SPMLIKE 10989 0.0383 (113/2951) 0 * Os_TE_618273 Os_TE_618271 Chr12 17384611 17384612 - CASTAWAY 364 0.3888 (1155/2971) 0 * Os_TE_618270 Os_TE_618270 Chr12 17384610 17384609 + CASTAWAY 364 0.3684 (1069/2902) 0 * Os_TE_618271 Os_TE_618268 Chr12 17384033 17384034 + F524 291 0.3967 (1148/2894) 0 * * Os_TE_618266 Chr12 17383184 17383183 - KRISPIE 956 0.0011 (2/1879) 0 * Os_TE_618265 Os_TE_618265 Chr12 17383183 17383184 + KRISPIE 956 0.0005 (1/1877) 0 * Os_TE_618266 Os_TE_618258 Chr12 17382462 17382201 - ORSgTETNOOT00502 263 0.1169 (343/2933) 1 Intact * Os_TE_618250 Chr12 17379490 17379828 + OLO24 345 0.7183 (1828/2545) 1 Intact * Os_TE_618239 Chr12 17375773 17375772 + STOWAWAY49_OS 241 0.0598 (179/2991) 0 * * Os_TE_618238 Chr12 17375765 17375766 + RIRE2_LTR 11306 0.0020 (6/2992) 0 * Os_TE_618237 Os_TE_618237 Chr12 17375761 17375760 - RIRE2_LTR 11306 0.0021 (6/2833) 0 * Os_TE_618238 Os_TE_618236 Chr12 17375317 17368931 + RIRE5-LTR_OS 6427 0.6285 (1873/2980) 1 Intact Os_TE_618219 Os_TE_618219 Chr12 17368928 17375317 - RIRE5-LTR_OS 6427 0.8354 (1909/2285) 1 Intact Os_TE_618236 Os_TE_618217 Chr12 17368561 17368562 + ORSgTEMT01601591 242 0.0005 (1/1887) 0 * * Os_TE_618199 Chr12 17360728 17360727 + ORSgTEMT00300069 394 0.0592 (173/2921) 0 * * Os_TE_618198 Chr12 17359456 17359457 - OSTE20 496 0.0538 (75/1393) 0 * * Os_TE_618169 Chr12 17350266 17350267 - SZ-7A_LTR 11400 0.1067 (181/1697) 0 * * Os_TE_618161 Chr12 17349806 17352268 + MERMITEA 1710 0.5707 (1671/2928) 1 Intact * Os_TE_618158 Chr12 17349601 17349600 + STOWAWAY17_OS 259 0.4516 (1303/2885) 0 * * Os_TE_618157 Chr12 17348688 17348689 - ORSgTEMT01601208 238 0.0003 (1/2893) 0 * * Os_TE_618152 Chr12 17348305 17348543 - ORSiTETNOOT00015 241 0.4857 (1440/2965) 1 Intact * Os_TE_618150 Chr12 17347931 17347932 - ORSgTETN00200001 10994 0.0017 (5/2977) 0 * Os_TE_618149 Os_TE_618149 Chr12 17347929 17347928 + SPMLIKE 10989 0.0020 (6/2974) 0 * Os_TE_618150 Os_TE_618148 Chr12 17346563 17345280 - CACTA-H 1152 0.5017 (1460/2910) 1 Intact Os_TE_618146 Os_TE_618146 Chr12 17345280 17346563 + CACTA-H 1152 0.4732 (1378/2912) 1 Intact Os_TE_618148 Os_TE_618140 Chr12 17343729 17343730 + RIRE2_LTR 11306 0.0206 (60/2917) 0 * Os_TE_618139 Os_TE_618139 Chr12 17343725 17343724 - RIRE2_LTR 11306 0.0251 (59/2353) 0 * Os_TE_618140 Os_TE_618138 Chr12 17343262 17343261 + RPO_OS 1983 0.5086 (1475/2900) 0 * * Os_TE_618102 Chr12 17335775 17335774 - ORSgTEMT01601432 239 0.0393 (117/2974) 0 * Os_TE_618101 Os_TE_618101 Chr12 17335772 17335773 + ORSgTEMT01602181 239 0.0413 (123/2976) 0 * Os_TE_618102 Os_TE_618100 Chr12 17335334 17335333 - ORSgTEMT01601432 239 0.0003 (1/2940) 0 * * Os_TE_618087 Chr12 17332314 17332315 + BAJIELTR 4500 0.0716 (213/2975) 0 * * Os_TE_618081 Chr12 17329041 17329042 + TRUNCATOR 2918 0.0412 (121/2937) 0 * * Os_TE_618062 Chr12 17326331 17326330 - ATLANTYS-LTR_OS 13740 0.0003 (1/2983) 0 * * Os_TE_618061 Chr12 17325003 17325004 - RPO_OS 1983 0.0556 (163/2930) 0 * * Os_TE_618060 Chr12 17324426 17312988 - ENSPM4_OS 11610 0.1390 (412/2965) 1 Intact Os_TE_618058 Os_TE_618058 Chr12 17312988 17324426 + ENSPM4_OS 11610 0.1363 (406/2978) 1 Intact Os_TE_618060 Os_TE_618056 Chr12 17312244 17312243 + SZ-28LTR 262 0.0673 (199/2958) 0 * * Os_TE_618050 Chr12 17309649 17309650 - CLOUD 734 0.0371 (111/2990) 0 * Os_TE_618049 Os_TE_618049 Chr12 17309641 17309640 - CLOUD 734 0.0371 (111/2988) 0 * Os_TE_618050 Os_TE_618044 Chr12 17308783 17308784 + CLOUD-7 495 0.0624 (183/2935) 0 * Os_TE_618043 Os_TE_618043 Chr12 17308777 17308776 + CLOUD-7 495 0.0621 (182/2931) 0 * Os_TE_618044 Os_TE_618038 Chr12 17306604 17306603 + OLO24 345 0.0667 (199/2984) 0 * * Os_TE_618037 Chr12 17305649 17305650 + COPIA2-LTR_OS 6433 0.0004 (1/2787) 0 * Os_TE_618036 Os_TE_618036 Chr12 17305645 17305644 - COPIA2-LTR_OS 6433 0.0003 (1/2964) 0 * Os_TE_618037 Os_TE_618025 Chr12 17301610 17301857 + STOWAWAY51_OS 246 0.6210 (1788/2879) 1 Intact * Os_TE_618024 Chr12 17301479 17301478 + ORSgTETNOOT00012 241 0.2130 (600/2817) 0 * * Os_TE_618023 Chr12 17301274 17301275 + GYPSY1-LTR_OS 8900 0.3410 (922/2704) 0 * Os_TE_618022 Os_TE_618022 Chr12 17301270 17301269 - GYPSY1-LTR_OS 8900 0.3540 (970/2740) 0 * Os_TE_618023 Os_TE_618010 Chr12 17298529 17298530 + ORSiTERTOOT00112 4608 0.0912 (205/2247) 0 * Os_TE_618009 Os_TE_618009 Chr12 17298525 17298524 - ORSiTERTOOT00274 4749 0.0940 (212/2255) 0 * Os_TE_618010 Os_TE_618007 Chr12 17297699 17295959 + SEVERIN-2 1952 0.4830 (1024/2120) 1 Intact * Os_TE_618005 Chr12 17295950 17295951 + ORSgTEMT01602119 229 0.0718 (207/2884) 0 * * Os_TE_617996 Chr12 17283315 17294621 + RIRE2_LTR 11306 0.0993 (295/2970) 1 Intact * Os_TE_617995 Chr12 17282867 17282866 - DITAILA 257 0.3269 (967/2958) 0 * * Os_TE_617994 Chr12 17282633 17282634 + ORSgTETNOOT00908 242 0.0604 (178/2947) 0 * Os_TE_617993 Os_TE_617993 Chr12 17282625 17282624 + ORSgTETNOOT01219 231 0.0622 (184/2957) 0 * Os_TE_617994 Os_TE_617992 Chr12 17282421 17282420 + ENSPM4_OS 11610 0.0010 (3/2975) 0 * * Os_TE_617971 Chr12 17274622 17274623 - RIRE2_LTR 11306 0.0003 (1/2897) 0 * Os_TE_617970 Os_TE_617970 Chr12 17274618 17274617 - ORSgTERT00201216 11284 0.0003 (1/2890) 0 * Os_TE_617971 Os_TE_617961 Chr12 17271978 17271977 + TRUNCATOR 2918 0.0550 (164/2984) 0 * Os_TE_617960 Os_TE_617960 Chr12 17271977 17271978 - TRUNCATOR 2918 0.0543 (162/2981) 0 * Os_TE_617961 Os_TE_617952 Chr12 17269641 17269786 + ORSgTEMT01702250 152 0.6395 (1889/2954) 1 Intact * Os_TE_617949 Chr12 17268929 17268930 - RIREX_LTR 8828 0.0007 (2/2968) 0 * * Os_TE_617947 Chr12 17267961 17267962 - TRUNCATOR2_LTR 2904 0.0003 (1/2997) 0 * * Os_TE_617926 Chr12 17261662 17261663 - TRUNCATOR 2918 0.2693 (779/2893) 0 * * Os_TE_617821 Chr12 17200462 17200463 - TRUNCATOR2_LTR 2904 0.0003 (1/2992) 0 * * Os_TE_617806 Chr12 17197030 17197031 + SZ-9LTR 965 0.0007 (2/2984) 0 * Os_TE_617805 Os_TE_617805 Chr12 17197026 17197025 - SZ-9LTR 965 0.0007 (2/2993) 0 * Os_TE_617806 Os_TE_617803 Chr12 17196614 17196613 + RETROSAT4_LTR 13504 0.0003 (1/2994) 0 * * Os_TE_617797 Chr12 17195644 17195645 - SEVERIN-2 1952 0.0047 (14/2993) 0 * * Os_TE_617795 Chr12 17195420 17195421 - SEVERIN-2 1952 0.0532 (158/2972) 0 * Os_TE_617794 Os_TE_617794 Chr12 17195417 17195416 + SEVERIN-2 1952 0.0596 (178/2989) 0 * Os_TE_617795 Os_TE_617793 Chr12 17194720 17181319 - TRUNCATOR 2918 0.0982 (280/2851) 1 Intact Os_TE_617791 Os_TE_617791 Chr12 17181319 17194715 + TRUNCATOR 2918 0.1015 (298/2937) 1 Intact Os_TE_617793 Os_TE_617755 Chr12 17154849 17154850 - OSLINE1_1 4159 0.3084 (66/214) -1 * * Os_TE_617688 Chr12 17081880 17074328 + RIREX_LTR 8828 0.1020 (294/2881) 1 Intact Os_TE_617686 Os_TE_617686 Chr12 17074328 17081880 - RIREX_LTR 8828 0.0999 (298/2984) 1 Intact Os_TE_617688 Os_TE_617677 Chr12 17072783 17072782 + TRUNCATOR 2918 0.2069 (590/2851) 0 * * Os_TE_617676 Chr12 17072661 17072662 + ORSiCMCM00100019 2717 0.0595 (169/2842) 0 * Os_TE_617675 Os_TE_617675 Chr12 17072657 17072656 - TRUNCATOR2_LTR 2904 0.0628 (178/2835) 0 * Os_TE_617676 Os_TE_617673 Chr12 17071670 17071669 - COPI2_LTR 4733 0.0010 (3/2976) 0 * * Os_TE_617668 Chr12 17070184 17070185 + ENSPM4_OS 11610 0.0003 (1/2983) 0 * Os_TE_617667 Os_TE_617667 Chr12 17070182 17070181 - ENSPM4_OS 11610 0.0003 (1/2981) 0 * Os_TE_617668 Os_TE_617658 Chr12 17068739 17068738 + STOWAWAY9_OS 235 0.0003 (1/2981) 0 * Os_TE_617657 Os_TE_617657 Chr12 17068738 17068739 + ORSgTEMT01400031 216 0.0003 (1/2981) 0 * Os_TE_617658 Os_TE_617656 Chr12 17068338 17068339 - COPIA2-LTR_OS 6433 0.0043 (13/2989) 0 * Os_TE_617655 Os_TE_617655 Chr12 17068334 17068333 + COPIA2-LTR_OS 6433 0.0043 (13/2989) 0 * Os_TE_617656 Os_TE_617647 Chr12 17065735 17066272 + XIKE 594 0.8704 (2512/2886) 1 Intact * Os_TE_617643 Chr12 17065237 17065238 - COPIA2-LTR_OS 6433 0.0004 (1/2625) 0 * Os_TE_617642 Os_TE_617642 Chr12 17065233 17065232 + COPIA2-LTR_OS 6433 0.0004 (1/2811) 0 * Os_TE_617643 Os_TE_617640 Chr12 17062403 17062404 + RIRE3_LTR 12054 0.0030 (7/2369) 0 * * Os_TE_617634 Chr12 17060665 17060666 + DS-RICE2N 613 0.2257 (511/2264) 0 * * Os_TE_617628 Chr12 17059668 17059669 - ORSgTEMT01701488 202 0.0011 (3/2781) 0 * * Os_TE_617617 Chr12 17058605 17058606 - RIRE2_LTR 11306 0.0026 (6/2337) 0 * Os_TE_617616 Os_TE_617616 Chr12 17058601 17058600 + RIRE2_LTR 11306 0.0026 (6/2342) 0 * Os_TE_617617 Os_TE_617613 Chr12 17058029 17058028 - TRUNCATOR2_LTR 2904 0.0008 (2/2354) 0 * * Os_TE_617566 Chr12 17042366 17042367 - ENSPM4_OS 11610 0.2407 (562/2335) 0 * * Os_TE_617549 Chr12 17037111 17037110 + AMYLTP 383 0.0164 (48/2931) 0 * * Os_TE_617547 Chr12 17036745 17036744 - SEVERIN-2 1952 0.1678 (481/2867) 0 * Os_TE_617546 Os_TE_617546 Chr12 17036744 17036745 + SEVERIN-2 1952 0.1476 (414/2804) 0 * Os_TE_617547 Os_TE_617545 Chr12 17036681 17036682 - ORSiTERT00100063 7723 0.0164 (47/2862) 0 * * Os_TE_617544 Chr12 17036657 17036656 + SEVERIN-2 1952 0.0004 (1/2832) 0 * * Os_TE_617535 Chr12 17021974 17021975 - RIRE2_LTR 11306 0.0017 (2/1180) -1 * Os_TE_617534 Os_TE_617534 Chr12 17021970 17021969 - ORSgTERT00201216 11284 0.0017 (2/1173) -1 * Os_TE_617535 Os_TE_617516 Chr12 17014880 17014881 + SZ-41LTR 163 0.0192 (47/2450) 0 * * Os_TE_617514 Chr12 17014698 17014697 + CACTA-J 1159 0.0188 (46/2443) 0 * * Os_TE_617510 Chr12 17014197 17014198 + RIREX_LTR 8828 0.0003 (1/2975) 0 * * Os_TE_617508 Chr12 17013934 17013935 + RETROSAT4_LTR 13504 0.0631 (187/2962) 0 * * Os_TE_617505 Chr12 17013866 17013867 - SZ-62LTR 3649 0.1064 (314/2952) 0 * * Os_TE_617488 Chr12 17008422 17008173 + OSTE28 298 0.8581 (2444/2848) 1 Intact * Os_TE_617486 Chr12 17008136 17008137 + SZ-40LTR 2465 0.1525 (401/2629) 0 * Os_TE_617485 Os_TE_617485 Chr12 17008132 17008131 - SZ-40LTR 2465 0.1625 (417/2566) 0 * Os_TE_617486 Os_TE_617479 Chr12 17003673 17003672 + TREP219 104 0.1647 (490/2976) 0 * * Os_TE_617478 Chr12 17003645 17003646 - GAIJIN 147 0.0647 (174/2688) 0 * Os_TE_617477 Os_TE_617477 Chr12 17003637 17003636 - ORSgTEMT01900024 348 0.0529 (140/2647) 0 * Os_TE_617478 Os_TE_617468 Chr12 17001937 17001938 - RIREX_LTR 8828 0.0054 (16/2985) 0 * Os_TE_617467 Os_TE_617467 Chr12 17001933 17001932 + RIREX_LTR 8828 0.0050 (15/2981) 0 * Os_TE_617468 Os_TE_617466 Chr12 17001479 17001478 - STOWAWAY51_OS 246 0.0003 (1/2966) 0 * * Os_TE_617462 Chr12 17000719 17000500 + F569 228 0.5000 (1442/2884) 1 Intact Os_TE_617461 Os_TE_617461 Chr12 17000500 17000719 - F569 228 0.5070 (1486/2931) 1 Intact Os_TE_617462 Os_TE_617458 Chr12 16999825 16999826 + TRUNCATOR 2918 0.0010 (3/2930) 0 * * Os_TE_617454 Chr12 16999076 16999075 + RETRO1_LTR 8314 0.0122 (15/1232) 0 * * Os_TE_617451 Chr12 16997741 16997742 + SPMLIKE 10989 0.1946 (287/1475) 0 * Os_TE_617450 Os_TE_617450 Chr12 16997739 16997738 - ORSgTETN00200001 10994 0.1591 (238/1496) 0 * Os_TE_617451 Os_TE_617448 Chr12 16997601 16997602 + SEVERIN-2 1952 0.0061 (9/1466) 0 * Os_TE_617447 Os_TE_617447 Chr12 16997596 16997595 - SEVERIN-2 1952 0.0068 (10/1477) 0 * Os_TE_617448 Os_TE_617433 Chr12 16996074 16996075 - ORSgTERT00201216 11284 0.1054 (289/2743) 0 * Os_TE_617432 Os_TE_617432 Chr12 16996070 16996069 - RIRE2_LTR 11306 0.0995 (286/2875) 0 * Os_TE_617433 Os_TE_617427 Chr12 16995596 16995852 - WUJI 257 0.5287 (1520/2875) 1 Intact * Os_TE_617426 Chr12 16995522 16995521 - COPIA2-LTR_OS 6433 0.0429 (123/2867) 0 * * Os_TE_617420 Chr12 16994723 16994845 + SZ-58LTR 114 0.5430 (1534/2825) 1 Intact * Os_TE_617406 Chr12 16993695 16993694 + STOWAWAY51_OS 246 0.0003 (1/2971) 0 * * Os_TE_617404 Chr12 16993416 16993280 + ORSgTEMT00500201 140 0.5077 (1521/2996) 1 Intact * Os_TE_617401 Chr12 16993235 16992975 - ORSgTEMT00501644 152 0.8767 (1543/1760) 1 Intact * Os_TE_617394 Chr12 16992434 16992433 - TEMPINDAS 4259 0.0020 (6/2955) 0 * * Os_TE_617393 Chr12 16992058 16992059 + F770 284 0.0020 (6/2980) 0 * * Os_TE_617391 Chr12 16991627 16991628 + ORSgTEMT01400024 215 0.1150 (343/2982) 0 * * Os_TE_617389 Chr12 16991459 16991460 - DS-RICE2N 613 0.0641 (192/2997) 0 * * Os_TE_617382 Chr12 16987824 16987676 - ORSgTEMT00502382 152 0.4658 (1258/2701) 1 Intact Os_TE_617380 Os_TE_617380 Chr12 16987672 16987822 - ORSgTEMT00502293 151 0.5142 (1524/2964) 1 Intact Os_TE_617382 Os_TE_617374 Chr12 16986940 16986939 + COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * * Os_TE_617373 Chr12 16986792 16986791 - TEMPINDAS 4259 0.0664 (196/2952) 0 * * Os_TE_617371 Chr12 16986155 16986154 - ORSgTETNOOT01930 140 0.1073 (187/1743) 0 * * Os_TE_617370 Chr12 16986028 16986027 - ORSgTETNOOT01930 140 0.5079 (1518/2989) 0 * * Os_TE_617369 Chr12 16985903 16985902 + JINHUA 479 0.0022 (5/2303) 0 * * Os_TE_617367 Chr12 16985226 16973932 - ORSgTETN00200001 10994 0.1875 (283/1509) 1 Intact * Os_TE_617362 Chr12 16973731 16973730 + CACTA-B 1103 0.0024 (6/2481) 0 * * Os_TE_617349 Chr12 16969131 16968787 - NDNA2TNA_OS 346 0.3581 (825/2304) 1 Intact Os_TE_617345 Os_TE_617345 Chr12 16968786 16969131 + NDNA2TNA_OS 346 0.3547 (824/2323) 1 Intact Os_TE_617349 Os_TE_617343 Chr12 16968371 16968372 - SZ-62LTR 3649 0.6520 (1516/2325) 0 * * Os_TE_617340 Chr12 16966862 16966861 + ORSgTETNOOT02462 1789 0.0023 (6/2565) 0 * * Os_TE_617339 Chr12 16966549 16966550 - RETRO2_LTR 12874 0.4726 (930/1968) 0 * Os_TE_617338 Os_TE_617338 Chr12 16966546 16966545 + RETRO2A_LTR 12895 0.4349 (999/2297) 0 * Os_TE_617339 Os_TE_617337 Chr12 16966543 16966544 - TRUNCATOR2_LTR 2904 0.1056 (236/2235) 0 * Os_TE_617336 Os_TE_617336 Chr12 16966539 16966538 + ORSiCMCM00100019 2717 0.1674 (222/1326) 0 * Os_TE_617337 Os_TE_617335 Chr12 16963983 16963982 - ORSgTEMT01701302 154 0.0295 (64/2167) 0 * * Os_TE_617325 Chr12 16961188 16961420 - STOWAWAY43_OS 233 0.6922 (803/1160) 1 Intact * Os_TE_617302 Chr12 16933049 16933050 + MERMITEA 1710 0.0012 (1/813) 0 * * Os_TE_617254 Chr12 16915290 16915291 - COPIA2-LTR_OS 6433 0.0685 (56/818) 0 * * Os_TE_617240 Chr12 16906290 16906289 + RETROSAT2LTRA 3112 0.0058 (4/685) 0 * * Os_TE_617237 Chr12 16906042 16905727 + ORSgTEMT00101588 319 0.4426 (690/1559) 1 Intact * Os_TE_617215 Chr12 16899758 16899757 - RIREX_LTR 8828 0.0273 (59/2160) 0 * * Os_TE_617213 Chr12 16899114 16898885 - ORSgTEMT01600650 234 0.3073 (670/2180) 1 Intact Os_TE_617211 Os_TE_617211 Chr12 16898885 16899112 - ORSgTEMT01601432 239 0.2717 (545/2006) 1 Intact Os_TE_617213 Os_TE_617203 Chr12 16894738 16894398 + SINE03_OS 360 0.4952 (565/1141) 1 Intact * Os_TE_617191 Chr12 16888700 16888699 + RIRE2_LTR 11306 0.0789 (45/570) 0 * * Os_TE_617186 Chr12 16885966 16874869 - ORSgTETN00200001 10994 0.5594 (311/556) 1 Intact Os_TE_617176 Os_TE_617176 Chr12 16874869 16885966 + SPMLIKE 10989 0.5780 (337/583) 1 Intact Os_TE_617186 Os_TE_617175 Chr12 16874793 16874794 - RIRE2_LTR 11306 0.0756 (45/595) 0 * Os_TE_617174 Os_TE_617174 Chr12 16874789 16874788 + RIRE2_LTR 11306 0.0781 (46/589) 0 * Os_TE_617175 Os_TE_617161 Chr12 16862951 16863159 - ORSgTEMT01400006 213 0.2248 (310/1379) 1 Intact * Os_TE_617155 Chr12 16862331 16862330 - TYPEM 227 0.0021 (3/1400) 0 * * Os_TE_617152 Chr12 16861579 16861580 - COPIA2-LTR_OS 6433 0.0315 (55/1745) 0 * Os_TE_617151 Os_TE_617151 Chr12 16861575 16861574 + COPIA2-LTR_OS 6433 0.0248 (42/1692) 0 * Os_TE_617152 Os_TE_617139 Chr12 16858261 16858260 - ORSgTEMT00501447 126 0.3358 (408/1215) 0 * Os_TE_617138 Os_TE_617138 Chr12 16858257 16858258 + ORSgTEMT00502094 140 0.5100 (410/804) 0 * Os_TE_617139 Os_TE_617131 Chr12 16854114 16854115 - OSTE24 683 0.0208 (28/1344) 0 * * Os_TE_617129 Chr12 16854032 16854033 + MERMITE18E 1528 0.2980 (394/1322) 0 * * Os_TE_617127 Chr12 16853800 16852208 + MERMITEA 1710 0.2783 (342/1229) 1 Intact Os_TE_617125 Os_TE_617125 Chr12 16852208 16853800 + MERMITEA 1710 0.4569 (350/766) 1 Intact Os_TE_617127 Os_TE_617109 Chr12 16846788 16847123 - ORSgTEMT00100383 340 0.6737 (353/524) 1 Intact * Os_TE_617043 Chr12 16768817 16762436 + RIREX_LTR 8828 0.3179 (315/991) 1 Intact Os_TE_617042 Os_TE_617042 Chr12 16762436 16768817 - RIREX_LTR 8828 0.5329 (316/593) 1 Intact Os_TE_617043 Os_TE_616973 Chr12 16734087 16734088 - ORSgTEMT01700507 154 0.7818 (1910/2443) 0 * * Os_TE_616972 Chr12 16733983 16733982 + DNAUN1_OS 408 0.7787 (1868/2399) 0 * * Os_TE_616971 Chr12 16733711 16719204 - ORSgTERT00201216 11284 0.2998 (593/1978) 1 Intact Os_TE_616951 Os_TE_616951 Chr12 16719204 16733711 - RIRE2_LTR 11306 0.2430 (582/2395) 1 Intact Os_TE_616971 Os_TE_616950 Chr12 16719135 16719134 + WUWU 113 0.7815 (1885/2412) 0 * * Os_TE_616939 Chr12 16712953 16713169 + F569 228 0.1955 (580/2966) 1 Intact * Os_TE_616938 Chr12 16712840 16712841 + TELIA 141 0.0003 (1/2865) 0 * * Os_TE_616935 Chr12 16710724 16710725 + SEVERIN-2 1952 0.0845 (251/2971) 0 * * Os_TE_616934 Chr12 16709818 16709819 + ORSgTEMT01700791 134 0.1929 (400/2074) 0 * * Os_TE_616932 Chr12 16708962 16708961 + ORSgTEMT01700741 196 0.1476 (403/2731) 0 * Os_TE_616931 Os_TE_616931 Chr12 16708959 16708960 + ORSgTEMT01701104 154 0.2968 (379/1277) 0 * Os_TE_616932 Os_TE_616930 Chr12 16706932 16706933 + ORSgTEMT00500095 150 0.0022 (6/2784) 0 * Os_TE_616929 Os_TE_616929 Chr12 16706931 16706930 - ORSgTEMT00502258 148 0.0024 (7/2978) 0 * Os_TE_616930 Os_TE_616925 Chr12 16703900 16703901 + ORSgTEMT01602119 229 0.1947 (511/2624) 0 * * Os_TE_616921 Chr12 16702368 16702367 - STOWAWAY12_OS 312 0.0187 (45/2400) 0 * Os_TE_616920 Os_TE_616920 Chr12 16702367 16702368 + ORSgTEMT02900076 336 0.0180 (43/2389) 0 * Os_TE_616921 Os_TE_616918 Chr12 16702239 16702238 - SEVERIN-2 1952 0.0891 (261/2928) 0 * * Os_TE_616916 Chr12 16701562 16701563 - OSTONOR1_LTR 6440 0.5447 (1321/2425) 0 * * Os_TE_616913 Chr12 16701305 16701304 - TRUNCATOR2_LTR 2904 0.4569 (1003/2195) 0 * * Os_TE_616894 Chr12 16694091 16694092 - TRUNCATOR2_LTR 2904 0.1097 (260/2370) 0 * * Os_TE_616892 Chr12 16693859 16693858 + TRUNCATOR 2918 0.0004 (1/2307) 0 * * Os_TE_616891 Chr12 16693622 16693621 + TRUNCATOR 2918 0.0205 (46/2249) 0 * Os_TE_616890 Os_TE_616890 Chr12 16693621 16693622 - TRUNCATOR 2918 0.0176 (40/2274) 0 * Os_TE_616891 Os_TE_616886 Chr12 16691825 16691826 - MDM2 312 0.0038 (8/2118) 0 * * Os_TE_616878 Chr12 16689142 16689143 - SZ-55_LTR 10318 0.0005 (1/2106) 0 * Os_TE_616877 Os_TE_616877 Chr12 16689138 16689137 + SZ-55_LTR 10318 0.0005 (1/2112) 0 * Os_TE_616878 Os_TE_616875 Chr12 16686222 16686221 - SEVERIN-2 1952 0.1000 (202/2020) 0 * * Os_TE_616874 Chr12 16686180 16686181 - COPIA1-LTR_OS 9292 0.0597 (115/1925) 0 * Os_TE_616873 Os_TE_616873 Chr12 16686176 16686175 + COPIA1-LTR_OS 9292 0.0979 (194/1981) 0 * Os_TE_616874 Os_TE_616797 Chr12 16653916 16642620 - RIRE2_LTR 11306 0.1449 (366/2526) 1 Intact * Os_TE_616763 Chr12 16596099 16596100 + F1275 157 0.1521 (267/1755) 0 * * Os_TE_616762 Chr12 16595960 16595959 - TWIFB1 3737 0.0017 (3/1740) 0 * Os_TE_616761 Os_TE_616761 Chr12 16595959 16595960 + TWIFB1 3737 0.0018 (3/1696) 0 * Os_TE_616762 Os_TE_616757 Chr12 16594000 16593999 - TYPEM 227 0.8720 (2166/2484) 0.95 * * Os_TE_616751 Chr12 16591183 16591184 - SZ-59_LTR 5600 0.0004 (1/2479) 0 * * Os_TE_616750 Chr12 16589345 16589029 + OLO24 345 0.8730 (2138/2449) 1 Intact * Os_TE_616746 Chr12 16588997 16588998 + ORSgTETNOOT00908 242 0.0033 (8/2443) 0 * * Os_TE_616722 Chr12 16582543 16582544 - SZ-40LTR 2465 0.0005 (1/2119) 0 * Os_TE_616721 Os_TE_616721 Chr12 16582539 16582538 + GYPSY-A_LTR 8951 0.0005 (1/2171) 0 * Os_TE_616722 Os_TE_616701 Chr12 16574446 16574447 + ORSgTEMT04600032 273 0.1629 (383/2351) 0 * * Os_TE_616700 Chr12 16574161 16574160 - ORSiTERT00100063 7723 0.1194 (288/2413) 0 * * Os_TE_616690 Chr12 16566911 16566912 - RETROSAT2LTR 12796 0.0010 (2/2073) 0 * Os_TE_616689 Os_TE_616689 Chr12 16566909 16566908 + RETROSAT2LTR 12796 0.0015 (3/1993) 0 * Os_TE_616690 Os_TE_616687 Chr12 16565915 16565914 - TYPEM 227 0.0473 (121/2557) 0 * * Os_TE_616662 Chr12 16556480 16556479 + RIRE3_LTR 12054 0.0024 (7/2933) 0 * * Os_TE_616629 Chr12 16545890 16545889 - DITAILA 257 0.0004 (1/2832) 0 * * Os_TE_616618 Chr12 16543524 16543634 - ORSgTEMT01701366 170 0.6498 (1893/2913) 1 Intact * Os_TE_616613 Chr12 16542725 16542726 + TYPEH 309 0.0005 (1/1955) 0 * * Os_TE_616552 Chr12 16515441 16515442 - MIDWAY 985 0.0280 (47/1677) 0 * * Os_TE_616551 Chr12 16515312 16515311 + TRUNCATOR 2918 0.0527 (89/1689) 0 * * Os_TE_616539 Chr12 16503779 16503780 - SC-8_LTR 4951 0.0003 (1/2992) 0 * * Os_TE_616537 Chr12 16503658 16503659 - SC-3_LTR 5748 0.0191 (57/2979) 0 * * Os_TE_616532 Chr12 16499493 16499256 + STOWAWAY41_OS 264 0.5905 (1361/2305) -1 Intact * Os_TE_616529 Chr12 16498560 16498559 - COPIA2-LTR_OS 6433 0.0005 (1/2202) 0 * * Os_TE_616525 Chr12 16492992 16492993 - ORSgTEMT01601432 239 0.0060 (18/2994) 0 * Os_TE_616524 Os_TE_616524 Chr12 16492991 16492990 + ORSgTEMT01602181 239 0.0060 (18/2989) 0 * Os_TE_616525 Os_TE_616522 Chr12 16490784 16490783 - ENSPM4_OS 11610 0.0030 (9/2971) 0 * * Os_TE_616515 Chr12 16487979 16487980 - ORSgTEMT01701882 154 0.5235 (1535/2932) 0 * * Os_TE_616511 Chr12 16487729 16487728 - F524 291 0.0134 (32/2392) 0 * * Os_TE_616509 Chr12 16487416 16487417 + ORSgTEMT01601591 242 0.0430 (128/2976) 0 * * Os_TE_616506 Chr12 16484958 16484959 - RETROSAT4_LTR 13504 0.0008 (2/2579) 0 * Os_TE_616505 Os_TE_616505 Chr12 16484954 16484953 + RETROSAT4_LTR 13504 0.0007 (2/2715) 0 * Os_TE_616506 Os_TE_616503 Chr12 16484599 16484598 - ORSgTEMT01602521 238 0.4997 (1438/2878) 0 * Os_TE_616502 Os_TE_616502 Chr12 16484595 16484596 + ORSgTEMT01602188 240 0.5080 (1488/2929) 0 * Os_TE_616503 Os_TE_616499 Chr12 16483622 16483377 + ORSgTEMT00900266 245 0.1442 (368/2552) 1 Intact Os_TE_616497 Os_TE_616497 Chr12 16483375 16483593 - ORSgTEMT00900741 219 0.1233 (359/2912) 0.88 Intact Os_TE_616499 Os_TE_616495 Chr12 16482909 16482910 - RIREX_LTR 8828 0.0008 (2/2491) 0 * * Os_TE_616487 Chr12 16471684 16471683 + ENSPM4_OS 11610 0.0004 (1/2478) 0 * * Os_TE_616481 Chr12 16468843 16468844 + SZ-38 8643 0.2713 (655/2414) 0 * Os_TE_616480 Os_TE_616480 Chr12 16468839 16468838 - SZ-38 8643 0.2698 (648/2402) 0 * Os_TE_616481 Os_TE_616478 Chr12 16467784 16467783 - RETRO2_LTR 12874 0.1653 (387/2341) 0 * * Os_TE_616477 Chr12 16466547 16466548 - RETRO2_LTR 12874 0.0066 (15/2263) 0 * Os_TE_616476 Os_TE_616476 Chr12 16466543 16466542 + RETRO2A_LTR 12895 0.0081 (19/2335) 0 * Os_TE_616477 Os_TE_616475 Chr12 16465799 16465800 - ENSPM2_OS 10580 0.0317 (77/2432) 0 * Os_TE_616474 Os_TE_616474 Chr12 16465797 16465796 + ENSPM2_OS 10580 0.0301 (73/2426) 0 * Os_TE_616475 Os_TE_616471 Chr12 16465516 16465515 - SEVERIN-2 1952 0.0008 (2/2433) 0 * * Os_TE_616470 Chr12 16465489 16465490 + COPIA2-LTR_OS 6433 0.0016 (4/2444) 0 * Os_TE_616469 Os_TE_616469 Chr12 16465485 16465484 - COPIA2-LTR_OS 6433 0.0016 (4/2438) 0 * Os_TE_616470 Os_TE_616468 Chr12 16465435 16465436 - TNR3 1536 0.0555 (139/2504) 0 * Os_TE_616467 Os_TE_616467 Chr12 16465433 16465432 - ENSPM3_OS 10837 0.0302 (74/2448) 0 * Os_TE_616468 Os_TE_616466 Chr12 16465125 16465126 + EnSpm-13_OS 11171 0.0004 (1/2431) 0 * Os_TE_616465 Os_TE_616465 Chr12 16465123 16465122 - EnSpm-13_OS 11171 0.0004 (1/2450) 0 * Os_TE_616466 Os_TE_616464 Chr12 16465038 16465039 - GYPSY1-LTR_OS 8900 0.0009 (2/2165) 0 * Os_TE_616463 Os_TE_616463 Chr12 16465034 16465033 + GYPSY1-LTR_OS 8900 0.0603 (135/2238) 0 * Os_TE_616464 Os_TE_616457 Chr12 16464510 16464272 - STOWAWAY51_OS 246 0.5578 (1115/1999) 1 Intact * Os_TE_616454 Chr12 16464176 16464177 - TRUNCATOR2_LTR 2904 0.0471 (114/2422) 0 * * Os_TE_616453 Chr12 16463298 16463297 + ORSgTEMT00101674 340 0.0092 (23/2501) 0 * Os_TE_616452 Os_TE_616452 Chr12 16463297 16463298 + NDNA1TNA_OS 334 0.0093 (23/2486) 0 * Os_TE_616453 Os_TE_616451 Chr12 16463269 16463270 + INDITTO 263 0.0012 (3/2441) 0 * Os_TE_616450 Os_TE_616450 Chr12 16463267 16463266 - INDITTO 263 0.0016 (4/2477) 0 * Os_TE_616451 Os_TE_616445 Chr12 16462041 16462040 - TREP215 239 0.0552 (134/2429) 0 * * Os_TE_616431 Chr12 16459089 16459090 - ORSgTEMT01601432 239 0.4722 (1102/2334) 0 * * Os_TE_616430 Chr12 16457970 16457969 - ORSgTEMT01601432 239 0.0527 (127/2409) 0 * * Os_TE_616346 Chr12 16418735 16418734 + RIRE3_LTR 12054 0.0554 (113/2041) 0 * * Os_TE_616331 Chr12 16414833 16414832 + CACTA-B 1103 0.4409 (1309/2969) 0 * Os_TE_616330 Os_TE_616330 Chr12 16414832 16414833 - CACTA-M 1129 0.4485 (1337/2981) 0 * Os_TE_616331 Os_TE_616329 Chr12 16414243 16414242 + WUWU 113 0.4471 (1293/2892) 0 * * Os_TE_616319 Chr12 16411932 16411933 - TREP215 239 0.6710 (1344/2003) 0 * * Os_TE_616318 Chr12 16411813 16411560 - ORSgTETNOOT01607 258 0.3519 (668/1898) 1 Intact Os_TE_616316 Os_TE_616316 Chr12 16411555 16411808 + ORSgTETNOOT02577 232 0.2429 (660/2717) 1 Intact Os_TE_616318 Os_TE_616315 Chr12 16411488 16411489 - RIREX_LTR 8828 0.0011 (3/2772) 0 * * Os_TE_616314 Chr12 16411120 16411349 - ORSgTETNOOT01982 231 0.2543 (669/2631) 1 Intact * Os_TE_616312 Chr12 16410472 16410473 - SZ-5LTR 1223 0.1753 (515/2938) 0 * * Os_TE_616309 Chr12 16409367 16409368 - ORSgTEMT01601934 207 0.7504 (1981/2640) 0 * Os_TE_616308 Os_TE_616308 Chr12 16409364 16409363 - ORSgTEMT01601493 303 0.7808 (2304/2951) 0 * Os_TE_616309 Os_TE_616306 Chr12 16408560 16408561 - ORSgTETN00200001 10994 0.0035 (10/2845) 0 * * Os_TE_616298 Chr12 16401991 16401990 - SZ-40LTR 2465 0.0101 (7/692) 0 * * Os_TE_616295 Chr12 16400218 16399974 - ORSgTETNOOT00350 243 0.4022 (1151/2862) 1 Intact * Os_TE_616278 Chr12 16397090 16397091 - OSTE24 683 0.0310 (87/2808) 0 * Os_TE_616277 Os_TE_616277 Chr12 16397080 16397079 - OSTE24 683 0.0341 (96/2819) 0 * Os_TE_616278 Os_TE_616265 Chr12 16393599 16393598 - EnSpm-11_OS 13126 0.0008 (2/2376) 0 * * Os_TE_616258 Chr12 16385615 16385614 - MDM2 312 0.0033 (2/613) 0 * * Os_TE_616243 Chr12 16369354 16369134 + ORSgTEMT01602181 239 0.8755 (2032/2321) 1 Intact * Os_TE_616242 Chr12 16368707 16368708 - SC-4_LTR 5218 0.0007 (2/2990) 0 * * Os_TE_616239 Chr12 16368655 16368654 - RIREX_LTR 8828 0.2687 (799/2974) 0 * * Os_TE_616216 Chr12 16360884 16360885 + RETRO2_LTR 12874 0.1872 (560/2991) 0 * Os_TE_616215 Os_TE_616215 Chr12 16360880 16360879 - RETRO2_LTR 12874 0.1845 (551/2986) 0 * Os_TE_616216 Os_TE_616211 Chr12 16358622 16358623 + COPI2_LTR 4733 0.0004 (1/2416) 0 * * Os_TE_616210 Chr12 16357807 16357808 + ORSgTETNOOT01930 140 0.0613 (178/2903) 0 * Os_TE_616209 Os_TE_616209 Chr12 16357805 16357804 - ORSgTETNOOT01930 140 0.0627 (182/2905) 0 * Os_TE_616210 Os_TE_616206 Chr12 16357299 16350863 + COPIA2-LTR_OS 6433 0.1812 (524/2892) 1 Intact Os_TE_616201 Os_TE_616201 Chr12 16350863 16357299 - COPIA2-LTR_OS 6433 0.1816 (526/2897) 1 Intact Os_TE_616206 Os_TE_616199 Chr12 16349500 16349501 - TRUNCATOR2_LTR 2904 0.1294 (354/2735) 0 * * Os_TE_616195 Chr12 16348562 16348460 + ORSgTEMT01700487 156 0.6202 (529/853) 1 Intact Os_TE_616194 Os_TE_616194 Chr12 16348460 16348562 - ORSgTEMT01701299 116 0.2283 (491/2151) 1 Intact Os_TE_616195 Os_TE_616192 Chr12 16346660 16346661 + ORSgTETNOOT00908 242 0.1028 (299/2908) 0 * * Os_TE_616191 Chr12 16346309 16346310 + SPMLIKE 10989 0.3237 (940/2904) 0 * Os_TE_616190 Os_TE_616190 Chr12 16346306 16346305 - ORSgTETN00200001 10994 0.3225 (933/2893) 0 * Os_TE_616191 Os_TE_616186 Chr12 16344750 16344749 - TEMPINDAS 4259 0.0038 (11/2902) 0 * * Os_TE_616184 Chr12 16343925 16331071 - MERMITE18C 1473 0.8576 (2470/2880) 1 Intact Os_TE_616152 Os_TE_616152 Chr12 16331067 16343921 + MERMITE18C 1473 0.8664 (2438/2814) 1 Intact Os_TE_616184 Os_TE_616151 Chr12 16330995 16330994 - TEMPINDAS 4259 0.0039 (11/2823) 0 * * Os_TE_616143 Chr12 16323846 16323847 + ORSiCMCM00100019 2717 0.0123 (35/2848) 0 * * Os_TE_616138 Chr12 16320253 16320254 + SPMLIKE 10989 0.0780 (214/2743) 0 * Os_TE_616137 Os_TE_616137 Chr12 16320251 16320250 - ORSgTETN00200001 10994 0.0745 (204/2740) 0 * Os_TE_616138 Os_TE_616136 Chr12 16319394 16319393 + CACTA-B 1103 0.0014 (4/2775) 0 * Os_TE_616135 Os_TE_616135 Chr12 16319388 16319389 + ORSgTETN00200005 1121 0.0014 (4/2776) 0 * Os_TE_616136 Os_TE_616131 Chr12 16318426 16318425 - SEVERIN-2 1952 0.0007 (2/2764) 0 * * Os_TE_616127 Chr12 16317089 16317090 - TRUNCATOR2_LTR 2904 0.0024 (3/1236) 0 * * Os_TE_616125 Chr12 16316986 16316987 - TRUNCATOR2_LTR 2904 0.4837 (1067/2206) 0.5 * Os_TE_616124 Os_TE_616124 Chr12 16316982 16316981 + ORSiCMCM00100019 2717 0.1276 (199/1559) 0 * Os_TE_616125 Os_TE_616115 Chr12 16315778 16315777 + SEVERIN-2 1952 0.0328 (91/2771) 0 * * Os_TE_616087 Chr12 16303832 16303833 + TRUNCATOR 2918 0.0006 (1/1730) 0 * * Os_TE_616079 Chr12 16303211 16303210 + TRUNCATOR 2918 0.5704 (924/1620) 0 * Os_TE_616078 Os_TE_616078 Chr12 16303210 16303211 - TRUNCATOR 2918 0.4692 (892/1901) 0 * Os_TE_616079 Os_TE_616075 Chr12 16302577 16302339 - ORSgTEMT01602413 239 0.5505 (1520/2761) 1 Intact Os_TE_616074 Os_TE_616074 Chr12 16302337 16302577 + ORSgTEMT01601143 237 0.5527 (1541/2788) 1 Intact Os_TE_616075 Os_TE_616062 Chr12 16294949 16301480 - SEVERIN-2 1952 0.5464 (1507/2758) 1 Intact * Os_TE_616049 Chr12 16288164 16288165 - TELIA 141 0.0167 (47/2808) 0 * Os_TE_616048 Os_TE_616048 Chr12 16288156 16288155 + TELIA 141 0.0167 (47/2809) 0 * Os_TE_616049 Os_TE_616040 Chr12 16285259 16285260 - RIREX_LTR 8828 0.0007 (2/2740) 0 * * Os_TE_616039 Chr12 16284935 16284936 + EnSpm-10_OS 11265 0.7222 (2012/2786) 0 * Os_TE_616038 Os_TE_616038 Chr12 16284933 16284932 - EnSpm-10_OS 11265 0.7069 (1857/2627) 0 * Os_TE_616039 Os_TE_616033 Chr12 16283513 16283514 - SZ-20LTR 1395 0.6914 (1790/2589) 0 * * Os_TE_616028 Chr12 16280956 16280957 - RIRE3_LTR 12054 0.0842 (221/2626) 0 * Os_TE_616027 Os_TE_616027 Chr12 16280952 16280951 + RIRE3_LTR 12054 0.0871 (214/2458) 0 * Os_TE_616028 Os_TE_616025 Chr12 16280903 16280902 + TRUNCATOR 2918 0.0076 (20/2628) 0 * * Os_TE_616024 Chr12 16280577 16280576 + ORSgTEMT00502327 143 0.0242 (48/1987) 0 * Os_TE_616023 Os_TE_616023 Chr12 16280576 16280577 + ORSgTETNOOT01930 140 0.0180 (47/2617) 0.05 * Os_TE_616024 Os_TE_616009 Chr12 16275949 16275948 + RIREX_LTR 8828 0.6981 (1836/2630) 0 * * Os_TE_616007 Chr12 16275759 16275758 + ENSPM_OS 9843 0.0464 (132/2847) 0 * * Os_TE_615983 Chr12 16260443 16260442 - Mudr5_OS 5952 0.0058 (5/860) 0 * * Os_TE_615982 Chr12 16259716 16259717 - RIRE2_LTR 11306 0.0007 (2/2836) 0 * Os_TE_615981 Os_TE_615981 Chr12 16259712 16259711 - ORSgTERT00201216 11284 0.0007 (2/2831) 0 * Os_TE_615982 Os_TE_615980 Chr12 16259539 16259538 + STOWAWAY9_OS 235 0.0461 (127/2755) 0 * Os_TE_615979 Os_TE_615979 Chr12 16259538 16259539 - ORSgTEMT01400014 209 0.0462 (131/2837) 0 * Os_TE_615980 Os_TE_615975 Chr12 16258153 16258154 + RIREX_LTR 8828 0.0007 (2/2993) 0 * * Os_TE_615972 Chr12 16257734 16257733 - CLOUD-3 550 0.7924 (2362/2981) 0 * * Os_TE_615970 Chr12 16256622 16256621 + TRUNCATOR 2918 0.0157 (47/2986) 0 * * Os_TE_615968 Chr12 16255343 16255344 - MuDR4_OS 7610 0.0030 (2/661) 0 * Os_TE_615967 Os_TE_615967 Chr12 16255337 16255336 - MuDR4_OS 7610 0.0030 (2/675) 0 * Os_TE_615968 Os_TE_615961 Chr12 16254314 16254315 - ORSgTETN00200001 10994 0.0396 (26/656) 0 * Os_TE_615960 Os_TE_615960 Chr12 16254312 16254311 + SPMLIKE 10989 0.0216 (14/648) 0 * Os_TE_615961 Os_TE_615947 Chr12 16250201 16250200 + SZ-40LTR 2465 0.0482 (12/249) 0 * * Os_TE_615893 Chr12 16213012 16213013 + RIREX_LTR 8828 0.0147 (26/1769) 0 * * Os_TE_615890 Chr12 16211553 16211554 - COPIA2-LTR_OS 6433 0.0025 (7/2750) 0 * * Os_TE_615889 Chr12 16211416 16211417 + RIREX_LTR 8828 0.0708 (212/2995) 0 * Os_TE_615888 Os_TE_615888 Chr12 16211412 16211411 - RIREX_LTR 8828 0.0716 (214/2989) 0 * Os_TE_615889 Os_TE_615886 Chr12 16210743 16210744 + ORSgTEMT01601525 239 0.0060 (4/670) 0 * * Os_TE_615885 Chr12 16210735 16210736 + ORSgTEMT01600891 233 0.7821 (2276/2910) 0 * * Os_TE_615884 Chr12 16210729 16210730 + ORSgTEMT01601092 239 0.7636 (2067/2707) 0 * * Os_TE_615883 Chr12 16210396 16210397 - ID-4 284 0.0017 (5/2967) 0 * Os_TE_615882 Os_TE_615882 Chr12 16210394 16210393 + ID-4 284 0.0013 (4/2979) 0 * Os_TE_615883 Os_TE_615881 Chr12 16210104 16208902 - CACTA-H 1152 0.2202 (639/2902) 1 Intact * Os_TE_615880 Chr12 16208916 16208917 + CACTA-N 987 0.0007 (1/1538) 0 * * Os_TE_615877 Chr12 16208332 16208331 - ORSiTETNOOT00107 906 0.0103 (7/679) 0 * * Os_TE_615876 Chr12 16208018 16208017 - ORSgTETN00200001 10994 0.0003 (1/2960) 0 * * Os_TE_615870 Chr12 16204119 16207951 - SZ-67LTR 1540 0.2194 (648/2954) 1 Intact * Os_TE_615869 Chr12 16203559 16203560 - ORSgTERT00201216 11284 0.0401 (27/673) 0 * * Os_TE_615864 Chr12 16202451 16202450 - MDR2 6967 0.0298 (20/671) 0 * * Os_TE_615855 Chr12 16200138 16200139 + ORSgTEMT00901798 232 0.7771 (2182/2808) 0 * * Os_TE_615849 Chr12 16194133 16194134 - MERMITE18E 1528 0.0024 (7/2950) 0 * * Os_TE_615846 Chr12 16193207 16193206 - SZ-35LTR 3853 0.0017 (5/2988) 0 * * Os_TE_615843 Chr12 16191467 16191328 + ORSgTEMT00500201 140 0.3031 (664/2191) 1 Intact Os_TE_615842 Os_TE_615842 Chr12 16191322 16191464 + ORSgTEMT00502327 143 0.2146 (638/2973) 1 Intact Os_TE_615843 Os_TE_615840 Chr12 16190362 16190669 + SINE9_OS 293 0.5667 (671/1184) 1 Intact Os_TE_615839 Os_TE_615839 Chr12 16190323 16179051 - CACTA-P 1150 0.7514 (662/881) 1 Intact Os_TE_615840 Os_TE_615829 Chr12 16179000 16179001 + TRUNCATOR 2918 0.0171 (37/2158) 0 * * Os_TE_615828 Chr12 16178133 16178132 + TRUNCATOR 2918 0.0275 (67/2439) 0 * * Os_TE_615823 Chr12 16176978 16176977 + TRUNCATOR 2918 0.2992 (893/2985) 0 * * Os_TE_615822 Chr12 16176677 16176676 + RETRO2_LTR 12874 0.1791 (534/2981) 0 * * Os_TE_615821 Chr12 16175695 16174544 + CACTA-B 1103 0.2590 (646/2494) 1 Intact Os_TE_615818 Os_TE_615818 Chr12 16174544 16175692 - CACTA-I 1124 0.2568 (638/2484) 1 Intact Os_TE_615821 Os_TE_615806 Chr12 16173094 16173093 + CACTA-H 1152 0.1437 (101/703) 0 * Os_TE_615805 Os_TE_615805 Chr12 16173093 16173094 + ORSgTETN00200005 1121 0.0310 (90/2904) 0 * Os_TE_615806 Os_TE_615802 Chr12 16172715 16172486 + ORSgTEMT01602051 240 0.2203 (637/2891) 1 Intact Os_TE_615800 Os_TE_615800 Chr12 16172486 16172715 - TREP215 239 0.2222 (641/2885) 1 Intact Os_TE_615802 Os_TE_615796 Chr12 16169189 16169045 + STOWAWAY50_OS 174 0.2203 (644/2923) 1 Intact * Os_TE_615783 Chr12 16166812 16166575 - ORSgTEMT01601208 238 0.2141 (638/2980) 1 Intact Os_TE_615781 Os_TE_615781 Chr12 16166575 16166812 + ORSgTEMT01602665 238 0.2140 (639/2986) 1 Intact Os_TE_615783 Os_TE_615780 Chr12 16166407 16166270 + ORSgTEMT00500201 140 0.2365 (647/2736) 1 Intact Os_TE_615779 Os_TE_615779 Chr12 16166270 16166407 - ORSgTEMT00502257 142 0.2243 (643/2867) 1 Intact Os_TE_615780 Os_TE_615778 Chr12 16165798 16165591 - ORSgTEMT01400006 213 0.2162 (642/2969) 1 Intact Os_TE_615776 Os_TE_615776 Chr12 16165560 16165798 - ORSgTEMT01400014 209 0.2109 (624/2959) 1 Intact Os_TE_615778 Os_TE_615775 Chr12 16165183 16165182 + DS-RICE4N 715 0.0020 (6/2946) 0 * * Os_TE_615774 Chr12 16164810 16164811 - COPIA2-LTR_OS 6433 0.0003 (1/2969) 0 * Os_TE_615773 Os_TE_615773 Chr12 16164806 16164805 + COPIA2-LTR_OS 6433 0.0003 (1/2972) 0 * Os_TE_615774 Os_TE_615771 Chr12 16164310 16164311 - INDITTO 263 0.0003 (1/2976) 0 * Os_TE_615770 Os_TE_615770 Chr12 16164308 16164307 + INDITTO 263 0.0003 (1/2989) 0 * Os_TE_615771 Os_TE_615768 Chr12 16164116 16164233 - ORSgTEMT01701488 202 0.2108 (618/2931) 1 Intact * Os_TE_615764 Chr12 16163896 16163895 - MERMITED 1572 0.0024 (7/2950) 0 * * Os_TE_615762 Chr12 16161945 16161944 - ORSiCMCM00100013 9728 0.0026 (7/2715) 0 * * Os_TE_615750 Chr12 16159943 16159942 + INDITTO 263 0.8003 (2373/2965) 0 * * Os_TE_615744 Chr12 16157790 16157791 + ORSiCMCM00100013 9728 0.0021 (6/2865) 0 * * Os_TE_615741 Chr12 16157531 16157532 - RIRE2_LTR 11306 0.7984 (2380/2981) 0 * * Os_TE_615729 Chr12 16151650 16151536 - SZ-58LTR 114 0.2137 (625/2925) 1 Intact * Os_TE_615724 Chr12 16146237 16146236 + CACTA-I 1124 0.0024 (7/2938) 0 * * Os_TE_615715 Chr12 16139839 16139686 + COWARD-3 221 0.2055 (615/2992) 1 Intact Os_TE_615713 Os_TE_615713 Chr12 16139681 16139839 - COWARD-3 221 0.2035 (609/2992) 1 Intact Os_TE_615715 Os_TE_615710 Chr12 16138636 16132550 - OSLINE1-5 4688 0.2681 (628/2342) 1 Intact * Os_TE_615698 Chr12 16127783 16127782 + SPMLIKE 10989 0.0021 (4/1863) 0 * * Os_TE_615697 Chr12 16127441 16127127 + ORSgTEMT02900076 336 0.3275 (623/1902) 1 Intact * Os_TE_615669 Chr12 16115934 16115935 + SZ-5LTR 1223 0.0016 (1/628) 0 * * Os_TE_615654 Chr12 16093314 16093315 - MPING 430 0.0032 (2/632) 0 * Os_TE_615653 Os_TE_615653 Chr12 16093312 16093311 + MPING 430 0.0032 (2/632) 0 * Os_TE_615654 Os_TE_615641 Chr12 16087951 16087950 + TRUNCATOR 2918 0.0084 (15/1793) 0 * * Os_TE_615630 Chr12 16082305 16082304 - ENSPM4_OS 11610 0.0012 (2/1682) 0 * * Os_TE_615625 Chr12 16079039 16077795 + SZ-30_LTR 6377 0.3212 (629/1958) 1 Solo_LTR Os_TE_615621 Os_TE_615621 Chr12 16077795 16079039 - SZ-30_LTR 6377 0.3204 (628/1960) 1 Solo_LTR Os_TE_615625 Os_TE_615620 Chr12 16077702 16077703 + ORSiTERTOOT00028 8600 0.0005 (1/1970) 0 * Os_TE_615619 Os_TE_615619 Chr12 16077698 16077697 - TRUNCATOR2_LTR 2904 0.0005 (1/1966) 0 * Os_TE_615620 Os_TE_615617 Chr12 16076802 16076803 - ENSPM2_OS 10580 0.6621 (1207/1823) 0 * * Os_TE_615610 Chr12 16073151 16064046 + SEVERIN-2 1952 0.3263 (604/1851) 1 Intact * Os_TE_615604 Chr12 16065541 16069910 - SEVERIN-2 1952 0.8729 (515/590) 1 Intact * Os_TE_615598 Chr12 16064044 16073151 - SEVERIN-2 1952 0.3207 (607/1893) 1 Intact * Os_TE_615597 Chr12 16063909 16063910 - RIRE2_LTR 11306 0.1019 (193/1894) 0 * Os_TE_615596 Os_TE_615596 Chr12 16063905 16063904 + RIRE2_LTR 11306 0.1045 (194/1856) 0 * Os_TE_615597 Os_TE_615594 Chr12 16063687 16063686 - ORSgTEMT00900741 219 0.6845 (1306/1908) 0 * * Os_TE_615588 Chr12 16062611 16062410 - ORSgTEMT01400015 213 0.4009 (597/1489) 1 Intact * Os_TE_615580 Chr12 16060655 16060656 + NDNA1TNA_OS 334 0.0719 (71/988) 0 * Os_TE_615579 Os_TE_615579 Chr12 16060653 16060652 - NDNA1TNA_OS 334 0.0760 (77/1013) 0 * Os_TE_615580 Os_TE_615575 Chr12 16059873 16059872 - RETROSAT2LTRA 3112 0.0762 (92/1207) 0 * * Os_TE_615572 Chr12 16058247 16058248 - ORSgTERT00201216 11284 0.0033 (4/1197) 0 * * Os_TE_615563 Chr12 16056047 16056046 + RIREX_LTR 8828 0.0017 (2/1191) 0 * * Os_TE_615561 Chr12 16055646 16055645 + TNR2A 152 0.1791 (185/1033) 0 * * Os_TE_615559 Chr12 16055117 16055118 - ORSgTEMT01800105 452 0.7239 (1489/2057) 0 * * Os_TE_615555 Chr12 16052667 16052668 - TRUNCATOR2_LTR 2904 0.0018 (4/2276) 0 * * Os_TE_615537 Chr12 16041110 16035870 + CACTA-K 1131 0.2849 (623/2187) 1 Intact * Os_TE_615525 Chr12 16035462 16035461 + TRUNCATOR 2918 0.0961 (210/2186) 0 * Os_TE_615524 Os_TE_615524 Chr12 16035461 16035462 - TRUNCATOR 2918 0.0928 (203/2188) 0 * Os_TE_615525 Os_TE_615523 Chr12 16033733 16033732 - RIRE2_LTR 11306 0.2516 (548/2178) 0 * * Os_TE_615520 Chr12 16033168 16033029 + ORSgTEMT01701145 147 0.2893 (626/2164) 1 Intact Os_TE_615518 Os_TE_615518 Chr12 16033029 16033168 + ORSgTEMT01701265 147 0.2890 (624/2159) 1 Intact Os_TE_615520 Os_TE_615516 Chr12 16032965 16032964 - RETRO2_LTR 12874 0.6000 (1299/2165) 0 * * Os_TE_615510 Chr12 16028020 16028021 - ORSgTEMT01700299 212 0.7217 (1579/2188) 0 * * Os_TE_615509 Chr12 16027800 16027799 + HELITRON2_OS 15167 0.0087 (19/2180) 0 * * Os_TE_615508 Chr12 16027753 16027752 - HELITRON2_OS 15167 0.1388 (89/641) 0 * * Os_TE_615499 Chr12 16024109 16023871 - ORSgTEMT01602413 239 0.2251 (610/2710) 1 Intact * Os_TE_615487 Chr12 16019588 16019587 - RIRE3_LTR 12054 0.0025 (5/2016) 0 * * Os_TE_615479 Chr12 16017253 16006209 + CACTA-B 1103 0.2316 (504/2176) 1 Intact Os_TE_615471 Os_TE_615471 Chr12 16006209 16017250 - ORSgTETN00200001 10994 0.2293 (495/2159) 1 Intact Os_TE_615479 Os_TE_615468 Chr12 16004135 16004136 + ORSgTEMT02400014 229 0.5808 (1308/2252) 0 * * Os_TE_615467 Chr12 16004102 16004101 + ORSgTEMT05000092 279 0.0005 (1/2155) 0 * * Os_TE_615464 Chr12 16002681 16002948 - DNAUN1_OS 408 0.3430 (756/2204) 1 Intact * Os_TE_615455 Chr12 16000764 15999747 + DASIA-2 1198 0.3317 (745/2246) 1 Intact * Os_TE_615445 Chr12 15995931 15995930 - ORSgTEMT01601208 238 0.6665 (1475/2213) 0 * * Os_TE_615440 Chr12 15994714 15994561 + ORSgTEMT01701871 163 0.2920 (755/2586) 1 Intact Os_TE_615438 Os_TE_615438 Chr12 15994561 15994714 + ORSgTEMT01702158 154 0.3309 (772/2333) 1 Intact Os_TE_615440 Os_TE_615436 Chr12 15993118 15992972 + GAIJIN 147 0.2568 (752/2928) 1 Intact Os_TE_615434 Os_TE_615434 Chr12 15992969 15993113 + ORSgTEMT00500476 150 0.2589 (759/2932) 1 Intact Os_TE_615436 Os_TE_615424 Chr12 15988054 15988055 + RIREX_LTR 8828 0.0003 (1/2942) 0 * * Os_TE_615422 Chr12 15987980 15987981 - ENSPM4_OS 11610 0.1584 (144/909) 0 * * Os_TE_615421 Chr12 15987660 15987404 + ORSgTETNOOT00908 242 0.2771 (760/2743) 1 Intact * Os_TE_615420 Chr12 15987090 15987091 + ENSPM5_OS 9581 0.0440 (129/2933) 0 * * Os_TE_615404 Chr12 15975355 15975356 + SPMLIKE 10989 0.0295 (86/2918) 0 * * Os_TE_615379 Chr12 15963822 15963821 + SPMLIKE 10989 0.0004 (1/2750) 0 * * Os_TE_615369 Chr12 15960475 15960474 - SZ-30_LTR 6377 0.0708 (211/2982) 0 * * Os_TE_615291 Chr12 15913209 15913210 + RIREX_LTR 8828 0.0007 (2/2793) 0 * Os_TE_615290 Os_TE_615290 Chr12 15913205 15913204 - RIREX_LTR 8828 0.0007 (2/2798) 0 * Os_TE_615291 Os_TE_615222 Chr12 15887374 15887375 + RIRE3_LTR 12054 0.0056 (15/2682) 0 * Os_TE_615221 Os_TE_615221 Chr12 15887371 15887370 - RIRE3_LTR 12054 0.0056 (15/2679) 0 * Os_TE_615222 Os_TE_615197 Chr12 15877949 15877950 - TRUNCATOR2_LTR 2904 0.0004 (1/2686) 0 * * Os_TE_615180 Chr12 15874370 15874371 + RIRE3A_LTR 10580 0.0004 (1/2629) 0 * Os_TE_615179 Os_TE_615179 Chr12 15874366 15874365 - RIRE3A_LTR 10580 0.0004 (1/2634) 0 * Os_TE_615180 Os_TE_615158 Chr12 15864790 15864791 - SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_615157 Os_TE_615157 Chr12 15864786 15864785 + SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_615158 Os_TE_615152 Chr12 15860869 15860870 - SZ-22_LTR 4403 0.0003 (1/2973) 0 * * Os_TE_615138 Chr12 15855567 15855568 + COPIA2-LTR_OS 6433 0.0013 (4/2998) 0 * Os_TE_615137 Os_TE_615137 Chr12 15855563 15855562 - COPIA2-LTR_OS 6433 0.0013 (4/2995) 0 * Os_TE_615138 Os_TE_615135 Chr12 15855101 15855102 + NDNA1TNA_OS 334 0.0021 (6/2902) 0 * Os_TE_615134 Os_TE_615134 Chr12 15855099 15855098 - NDNA1TNA_OS 334 0.0021 (6/2895) 0 * Os_TE_615135 Os_TE_615129 Chr12 15852835 15852836 + ORSgTEMT00900533 246 0.0011 (3/2828) 0 * * Os_TE_615118 Chr12 15845910 15845911 - SC-3_LTR 5748 0.0314 (94/2996) 0 * Os_TE_615117 Os_TE_615117 Chr12 15845906 15845905 + ORSiTERTOOT00296 5553 0.0311 (93/2993) 0 * Os_TE_615118 Os_TE_615106 Chr12 15840777 15840778 + DS-RICE3N 525 0.0017 (5/2957) 0 * * Os_TE_615091 Chr12 15835858 15835859 - ORSgTERT00201216 11284 0.0007 (2/2999) 0 * Os_TE_615090 Os_TE_615090 Chr12 15835854 15835853 - RIRE2_LTR 11306 0.0007 (2/2998) 0 * Os_TE_615091 Os_TE_615087 Chr12 15835395 15835394 - TYPEM 227 0.0003 (1/2983) 0 * * Os_TE_615086 Chr12 15835380 15835381 - RIREX_LTR 8828 0.0030 (9/2984) 0 * Os_TE_615085 Os_TE_615085 Chr12 15835376 15835375 + RIREX_LTR 8828 0.0030 (9/2984) 0 * Os_TE_615086 Os_TE_615080 Chr12 15835001 15835002 - ORSgTERT00201216 11284 0.0007 (2/2976) 0 * * Os_TE_615063 Chr12 15831201 15831200 + DASIA-2 1198 0.0007 (2/2911) 0 * * Os_TE_615055 Chr12 15830262 15830261 - RETROSAT2LTR 12796 0.0124 (37/2991) 0 * * Os_TE_615043 Chr12 15827589 15827588 + ENSPM4_OS 11610 0.0010 (3/2966) 0 * * Os_TE_615040 Chr12 15827075 15827076 - RIRE2_LTR 11306 0.0003 (1/2969) 0 * * Os_TE_615033 Chr12 15825110 15825111 - MPING 430 0.0007 (2/2810) 0 * Os_TE_615032 Os_TE_615032 Chr12 15825108 15825107 + MPING 430 0.0007 (2/2855) 0 * Os_TE_615033 Os_TE_615017 Chr12 15821449 15821448 + TRUNCATOR 2918 0.0007 (2/2964) 0 * * Os_TE_615010 Chr12 15820308 15820309 - SZ-9LTR 965 0.0003 (1/2899) 0 * Os_TE_615009 Os_TE_615009 Chr12 15820304 15820303 + SZ-9LTR 965 0.0003 (1/2896) 0 * Os_TE_615010 Os_TE_615008 Chr12 15820019 15820020 - RIRE3_LTR 12054 0.0010 (3/2992) 0 * Os_TE_615007 Os_TE_615007 Chr12 15820015 15820014 + RIRE3_LTR 12054 0.0010 (3/2992) 0 * Os_TE_615008 Os_TE_614984 Chr12 15805956 15805955 + TRUNCATOR 2918 0.0368 (110/2991) 0 * * Os_TE_614945 Chr12 15792820 15792821 - RIREX_LTR 8828 0.0004 (1/2495) 0 * * Os_TE_614935 Chr12 15790604 15790605 + MDR2 6967 0.0353 (105/2971) 0 * Os_TE_614934 Os_TE_614934 Chr12 15790595 15790594 - MDR2 6967 0.0350 (104/2972) 0 * Os_TE_614935 Os_TE_614932 Chr12 15788409 15788410 + SPMLIKE 10989 0.0010 (3/2996) 0 * * Os_TE_614931 Chr12 15788243 15788244 + RIREX_LTR 8828 0.0010 (3/2953) 0 * Os_TE_614930 Os_TE_614930 Chr12 15788239 15788238 - RIREX_LTR 8828 0.0010 (3/2992) 0 * Os_TE_614931 Os_TE_614929 Chr12 15788224 15788223 + SEVERIN-2 1952 0.0160 (48/2993) 0 * * Os_TE_614924 Chr12 15786986 15786985 - RIRE2_LTR 11306 0.1138 (339/2979) 0 * * Os_TE_614922 Chr12 15785411 15785410 - OSTE21 1271 0.0064 (19/2989) 0 * * Os_TE_614921 Chr12 15785198 15785197 + TRUNCATOR 2918 0.0107 (32/2984) 0 * Os_TE_614920 Os_TE_614920 Chr12 15785197 15785198 - TRUNCATOR 2918 0.0091 (27/2977) 0 * Os_TE_614921 Os_TE_614894 Chr12 15780325 15780326 - ORSiTERTOOT00332 5395 0.0003 (1/2985) 0 * Os_TE_614893 Os_TE_614893 Chr12 15780321 15780320 + ORSiTERTOOT00332 5395 0.0003 (1/2984) 0 * Os_TE_614894 Os_TE_614891 Chr12 15779498 15779499 + SPMLIKE 10989 0.1965 (583/2967) 0 * * Os_TE_614885 Chr12 15776374 15776375 - ORSgTEMT01400014 209 0.0434 (130/2993) 0 * * Os_TE_614882 Chr12 15776334 15776333 - OSTONOR1_LTR 6440 0.0146 (42/2872) 0 * * Os_TE_614812 Chr12 15759612 15759611 + SETARIA1 1293 0.0409 (121/2962) 0 * * Os_TE_614810 Chr12 15758313 15758314 + ORSgTEMT00900339 250 0.0406 (118/2909) 0 * * Os_TE_614806 Chr12 15757303 15757302 - RIRE3_LTR 12054 0.0011 (3/2785) 0 * * Os_TE_614804 Chr12 15757272 15757273 - TRUNCATOR 2918 0.1945 (569/2925) 0 * * Os_TE_614799 Chr12 15756293 15756292 + TRUNCATOR 2918 0.3411 (947/2776) 0 * Os_TE_614798 Os_TE_614798 Chr12 15756292 15756293 - TRUNCATOR 2918 0.3307 (916/2770) 0 * Os_TE_614799 Os_TE_614795 Chr12 15755335 15755336 + RIREX_LTR 8828 0.0011 (3/2767) 0 * * Os_TE_614779 Chr12 15728411 15754161 - HELITRON1_OS 10182 0.2193 (606/2763) 1 Intact * Os_TE_614778 Chr12 15728378 15728379 - RIREX_LTR 8828 0.0011 (3/2771) 0 * Os_TE_614777 Os_TE_614777 Chr12 15728374 15728373 + RIREX_LTR 8828 0.0012 (3/2578) 0 * Os_TE_614778 Os_TE_614668 Chr12 15667862 15667863 - RIRE3_LTR 12054 0.0119 (20/1686) 0 * Os_TE_614667 Os_TE_614667 Chr12 15667858 15667857 + RIRE3_LTR 12054 0.0107 (18/1683) 0 * Os_TE_614668 Os_TE_614661 Chr12 15665256 15665255 + ORSgTEMT01602119 229 0.0557 (94/1689) 0 * Os_TE_614660 Os_TE_614660 Chr12 15665253 15665254 + ORSgTEMT01601525 239 0.0572 (97/1695) 0 * Os_TE_614661 Os_TE_614659 Chr12 15664857 15664858 - COPI2_LTR 4733 0.3991 (637/1596) 0 * Os_TE_614658 Os_TE_614658 Chr12 15664853 15664852 + COPI2_LTR 4733 0.3887 (615/1582) 0 * Os_TE_614659 Os_TE_614644 Chr12 15661138 15661139 - SEVERIN-2 1952 0.0236 (39/1656) 0 * Os_TE_614643 Os_TE_614643 Chr12 15661135 15661134 + SEVERIN-2 1952 0.0223 (37/1658) 0 * Os_TE_614644 Os_TE_614592 Chr12 15642349 15642350 + CACTA-I 1124 0.0010 (1/991) 0 * Os_TE_614591 Os_TE_614591 Chr12 15642347 15642346 - ORSgTETN00200001 10994 0.0010 (1/998) 0 * Os_TE_614592 Os_TE_614590 Chr12 15641929 15641930 - ORSgTETN00200001 10994 0.0964 (107/1110) 0 * * Os_TE_614589 Chr12 15641578 15641579 - SZ-54C_LTR 5249 0.0018 (2/1115) 0 * Os_TE_614588 Os_TE_614588 Chr12 15641574 15641573 + SZ-54C_LTR 5249 0.0009 (1/1117) 0 * Os_TE_614589 Os_TE_614584 Chr12 15637904 15637111 - CACTA-G1 797 0.4855 (468/964) 1 Intact Os_TE_614583 Os_TE_614583 Chr12 15637111 15637904 + CACTA-G1 797 0.4597 (479/1042) 1 Intact Os_TE_614584 Os_TE_614554 Chr12 15623373 15623372 + RIREX_LTR 8828 0.0375 (112/2983) 0 * * Os_TE_614553 Chr12 15623330 15623331 + SPMLIKE 10989 0.0003 (1/2990) 0 * * Os_TE_614519 Chr12 15575648 15598732 - ORSgTETN00200001 10994 0.4672 (1070/2290) 1 Intact * Os_TE_614517 Chr12 15575427 15575426 - SZ-COM 1308 0.0008 (2/2597) 0 * * Os_TE_614514 Chr12 15574136 15574135 - TRUNCATOR 2918 0.0020 (5/2551) 0 * Os_TE_614513 Os_TE_614513 Chr12 15574135 15574136 + TRUNCATOR 2918 0.0016 (4/2554) 0 * Os_TE_614514 Os_TE_614512 Chr12 15573489 15573490 - ORSgTETN00200001 10994 0.0044 (11/2524) 0 * Os_TE_614511 Os_TE_614511 Chr12 15573487 15573486 + SPMLIKE 10989 0.0165 (42/2543) 0 * Os_TE_614512 Os_TE_614503 Chr12 15568531 15568530 + ORSgTEMT01602181 239 0.0268 (71/2649) 0 * Os_TE_614502 Os_TE_614502 Chr12 15568528 15568529 - ORSgTEMT01601432 239 0.0279 (74/2655) 0 * Os_TE_614503 Os_TE_614499 Chr12 15567803 15567802 - SZ-COM 1308 0.0023 (6/2641) 0 * * Os_TE_614490 Chr12 15565569 15565568 + TRUNCATOR 2918 0.1003 (267/2662) 0 * Os_TE_614489 Os_TE_614489 Chr12 15565568 15565569 - TRUNCATOR 2918 0.0885 (232/2622) 0 * Os_TE_614490 Os_TE_614406 Chr12 15516733 15516734 - SZ-40LTR 2465 0.0004 (1/2389) 0 * Os_TE_614405 Os_TE_614405 Chr12 15516729 15516728 + GYPSY-A_LTR 8951 0.0004 (1/2405) 0 * Os_TE_614406 Os_TE_614392 Chr12 15508468 15508469 - ORSgTETN00200001 10994 0.0008 (2/2438) 0 * Os_TE_614391 Os_TE_614391 Chr12 15508466 15508465 + SPMLIKE 10989 0.0008 (2/2441) 0 * Os_TE_614392 Os_TE_614390 Chr12 15507983 15507982 - SEVERIN-2 1952 0.0050 (12/2392) 0 * * Os_TE_614387 Chr12 15507100 15507101 + ORSiTETNOOT00147 3619 0.0004 (1/2410) 0 * * Os_TE_614386 Chr12 15507093 15507094 + NDNA1TNA_OS 334 0.0075 (18/2408) 0 * * Os_TE_614378 Chr12 15506397 15505433 - SZ-9LTR 965 0.1952 (475/2434) 1 Intact * Os_TE_614372 Chr12 15498416 15498417 - RIRE2_LTR 11306 0.0004 (1/2364) 0 * * Os_TE_614371 Chr12 15497977 15497978 - ORSgTEMT01400006 213 0.0004 (1/2568) 0 * * Os_TE_614349 Chr12 15489514 15489515 - ORSiTERT00200154 9386 0.1155 (281/2433) 0 * * Os_TE_614347 Chr12 15489406 15489407 - ORSiTERT00200154 9386 0.0070 (17/2429) 0 * Os_TE_614346 Os_TE_614346 Chr12 15489404 15489403 + TRUNCATOR 2918 0.0074 (18/2435) 0 * Os_TE_614347 Os_TE_614345 Chr12 15489270 15489269 + TRUNCATOR 2918 0.1620 (395/2438) 0.07 * Os_TE_614344 Os_TE_614344 Chr12 15489269 15489270 - TRUNCATOR 2918 0.1496 (361/2413) 0 * Os_TE_614345 Os_TE_614343 Chr12 15489145 15489144 + TRUNCATOR 2918 0.2542 (615/2419) 0 * Os_TE_614342 Os_TE_614342 Chr12 15489144 15489145 - TRUNCATOR 2918 0.2419 (579/2394) 0 * Os_TE_614343 Os_TE_614341 Chr12 15488630 15488631 - ORSiTERT00200154 9386 0.1095 (264/2411) 0 * Os_TE_614340 Os_TE_614340 Chr12 15488624 15488623 + TRUNCATOR 2918 0.1113 (271/2435) 0 * Os_TE_614341 Os_TE_614305 Chr12 15476773 15476774 + ORSiTERTOOT00366 5449 0.1114 (267/2396) 0 * Os_TE_614304 Os_TE_614304 Chr12 15476769 15476768 - ORSiTERTOOT00366 5449 0.0914 (269/2943) 0 * Os_TE_614305 Os_TE_614300 Chr12 15472116 15472115 + CACTA-B 1103 0.2198 (501/2279) 0 * Os_TE_614299 Os_TE_614299 Chr12 15472115 15472116 - ORSgTETN00200001 10994 0.2689 (538/2001) 0 * Os_TE_614300 Os_TE_614294 Chr12 15471653 15471652 - TRUNCATOR 2918 0.2424 (651/2686) 0 * Os_TE_614293 Os_TE_614293 Chr12 15471652 15471653 + TRUNCATOR 2918 0.2475 (680/2748) 0 * Os_TE_614294 Os_TE_614292 Chr12 15470858 15470859 - ORSiTERT00200154 9386 0.2113 (566/2679) 0 * Os_TE_614291 Os_TE_614291 Chr12 15470852 15470851 + TRUNCATOR 2918 0.2649 (623/2352) 0 * Os_TE_614292 Os_TE_614290 Chr12 15470851 15470852 - TRUNCATOR 2918 0.2307 (586/2540) 0 * * Os_TE_614277 Chr12 15468917 15468918 + RIREX_LTR 8828 0.0004 (1/2421) 0 * Os_TE_614276 Os_TE_614276 Chr12 15468913 15468912 - RIREX_LTR 8828 0.0004 (1/2422) 0 * Os_TE_614277 Os_TE_614272 Chr12 15467435 15467436 + OSTE20 496 0.2076 (614/2958) 0 * * Os_TE_614271 Chr12 15467145 15467146 + ORSgTETN00100092 209 0.0003 (1/2901) 0 * * Os_TE_614269 Chr12 15466347 15466036 + ORSgTEMT01900006 305 0.8643 (2382/2756) 1 Intact Os_TE_614266 Os_TE_614266 Chr12 15466032 15466337 - ORSgTEMT01900023 299 0.8607 (2305/2678) 1 Intact Os_TE_614269 Os_TE_614251 Chr12 15460267 15460268 + MuDR2_OS 6770 0.0011 (3/2845) 0 * Os_TE_614250 Os_TE_614250 Chr12 15460258 15460257 - MuDR2_OS 6770 0.0007 (2/2830) 0 * Os_TE_614251 Os_TE_614249 Chr12 15459813 15459812 + ORSgTETNOOT00032 218 0.3023 (835/2762) 0 * * Os_TE_614243 Chr12 15459385 15459386 - RIRE2_LTR 11306 0.0017 (4/2419) 0 * Os_TE_614242 Os_TE_614242 Chr12 15459381 15459380 + RIRE2_LTR 11306 0.0016 (4/2578) 0 * Os_TE_614243 Os_TE_614235 Chr12 15458299 15458300 + RIRE2_LTR 11306 0.0003 (1/2890) 0 * Os_TE_614234 Os_TE_614234 Chr12 15458295 15458294 - RIRE2_LTR 11306 0.0004 (1/2549) 0 * Os_TE_614235 Os_TE_614233 Chr12 15458159 15458160 + RIRE2_LTR 11306 0.0062 (17/2747) 0 * Os_TE_614232 Os_TE_614232 Chr12 15458155 15458154 - RIRE2_LTR 11306 0.0065 (19/2943) 0 * Os_TE_614233 Os_TE_614225 Chr12 15456711 15456712 - RIREX_LTR 8828 0.0013 (3/2302) 0 * Os_TE_614224 Os_TE_614224 Chr12 15456707 15456706 + RIREX_LTR 8828 0.0013 (3/2278) 0 * Os_TE_614225 Os_TE_614221 Chr12 15456514 15456513 + SEVERIN-2 1952 0.3003 (599/1995) 0 * * Os_TE_614218 Chr12 15455727 15455728 - RIREX_LTR 8828 0.0013 (3/2385) 0 * Os_TE_614217 Os_TE_614217 Chr12 15455723 15455722 + RIREX_LTR 8828 0.0013 (3/2389) 0 * Os_TE_614218 Os_TE_614214 Chr12 15455583 15455336 - ORSgTEMT01400014 209 0.5514 (1383/2508) 1 Intact Os_TE_614209 Os_TE_614209 Chr12 15455334 15455552 + ORSgTEMT01400024 215 0.5579 (1305/2339) 1 Intact Os_TE_614214 Os_TE_614208 Chr12 15455267 15455268 + RETRO2A_LTR 12895 0.0007 (1/1378) 0 * Os_TE_614207 Os_TE_614207 Chr12 15455263 15455262 - RETRO1_LTR 8314 0.0004 (1/2453) 0 * Os_TE_614208 Os_TE_614206 Chr12 15455159 15455160 + MERMITE18B 1306 0.4474 (1068/2387) 0 * Os_TE_614205 Os_TE_614205 Chr12 15455153 15455152 + MERMITEB 1610 0.4452 (1061/2383) 0 * Os_TE_614206 Os_TE_614203 Chr12 15454619 15454618 + ORSgTEMT01601488 239 0.3458 (730/2111) 0 * Os_TE_614202 Os_TE_614202 Chr12 15454616 15454617 - ORSgTEMT01601208 238 0.3990 (909/2278) 0 * Os_TE_614203 Os_TE_614198 Chr12 15453432 15453433 + ORSiCMCM00100019 2717 0.0190 (27/1424) 0 * * Os_TE_614193 Chr12 15448115 15448114 - RIRE3A_LTR 10580 0.0007 (1/1418) 0 * * Os_TE_614160 Chr12 15436140 15436821 - OSTE20 496 0.4899 (1379/2815) 1 Intact * Os_TE_614155 Chr12 15434566 15434567 + SPMLIKE 10989 0.0037 (11/2976) 0 * Os_TE_614154 Os_TE_614154 Chr12 15434560 15434559 - ORSgTETN00200001 10994 0.0037 (11/2987) 0 * Os_TE_614155 Os_TE_614153 Chr12 15434319 15434320 - ORSgTETN00200001 10994 0.0250 (74/2957) 0 * Os_TE_614152 Os_TE_614152 Chr12 15434317 15434316 + SPMLIKE 10989 0.0232 (69/2978) 0 * Os_TE_614153 Os_TE_614151 Chr12 15434290 15434289 + TRUNCATOR 2918 0.0598 (177/2961) 0 * * Os_TE_614148 Chr12 15434067 15433856 + ORSgTEMT01601122 212 0.4683 (1398/2985) 1 Intact Os_TE_614147 Os_TE_614147 Chr12 15433828 15434067 + ORSgTEMT01601122 212 0.4636 (1370/2955) 1 Intact Os_TE_614148 Os_TE_614135 Chr12 15422396 15422397 - ORSgTETN00200001 10994 0.0007 (2/2973) 0 * * Os_TE_614133 Chr12 15421849 15421850 - SZ-9LTR 965 0.1417 (424/2992) 0 * Os_TE_614132 Os_TE_614132 Chr12 15421847 15421846 + SZ-9LTR 965 0.1432 (428/2989) 0 * Os_TE_614133 Os_TE_614127 Chr12 15419703 15419704 - TRUNCATOR 2918 0.2937 (859/2925) 0 * * Os_TE_614124 Chr12 15419389 15419390 + RIRE3_LTR 12054 0.2584 (750/2903) 0 * Os_TE_614123 Os_TE_614123 Chr12 15419385 15419384 - RIRE3_LTR 12054 0.2649 (786/2967) 0 * Os_TE_614124 Os_TE_614113 Chr12 15417336 15417337 + RIREX_LTR 8828 0.0017 (5/2953) 0 * Os_TE_614112 Os_TE_614112 Chr12 15417332 15417331 - RIREX_LTR 8828 0.0017 (5/2926) 0 * Os_TE_614113 Os_TE_614111 Chr12 15417195 15417194 - CACTA-Q 2268 0.3340 (989/2961) 0 * * Os_TE_614110 Chr12 15416721 15416722 - ORSgTEMT01700216 124 0.2026 (601/2966) 0 * Os_TE_614109 Os_TE_614109 Chr12 15416718 15416717 - STOWAWAY1_OS 149 0.1991 (590/2964) 0 * Os_TE_614110 Os_TE_614103 Chr12 15411759 15411758 + COPI2_LTR 4733 0.0010 (3/2968) 0 * * Os_TE_614100 Chr12 15409703 15409702 - RIRE2_LTR 11306 0.0593 (174/2936) 0 * * Os_TE_614064 Chr12 15381263 15381264 - TRUNCATOR2_LTR 2904 0.0013 (4/2968) 0 * Os_TE_614063 Os_TE_614063 Chr12 15381259 15381258 + TRUNCATOR2_LTR 2904 0.0010 (3/2971) 0 * Os_TE_614064 Os_TE_614061 Chr12 15380260 15381156 - ORSiTETNOOT00107 906 0.1975 (584/2957) 1 Intact * Os_TE_614049 Chr12 15377086 15377087 + CLOUD-7 495 0.0166 (10/601) 0 * * Os_TE_614028 Chr12 15361805 15361804 - ORSgTETNOOT02565 240 0.0016 (1/615) 0 * * Os_TE_614009 Chr12 15348104 15348105 + TRUNCATOR 2918 0.0019 (3/1593) 0 * * Os_TE_614002 Chr12 15345744 15345745 + ORSgTEMT01601122 212 0.7551 (1791/2372) 0 * * Os_TE_613999 Chr12 15345185 15345186 + ORSgTEMT00500746 152 0.7617 (1851/2430) 0 * * Os_TE_613991 Chr12 15344327 15344328 + ORSgTETNOOT00908 242 0.0003 (1/2979) 0 * * Os_TE_613985 Chr12 15342626 15342627 + ORSgTETNOOT01668 244 0.0580 (172/2966) 0 * * Os_TE_613983 Chr12 15340630 15340631 + ORSgTETNOOT00908 242 0.0003 (1/2898) 0 * * Os_TE_613979 Chr12 15340109 15340110 - INDITTO 263 0.7253 (1418/1955) 0 * * Os_TE_613975 Chr12 15338898 15338897 + NDNA1TNA_OS 334 0.0003 (1/2890) 0 * * Os_TE_613961 Chr12 15335111 15335112 + SPMLIKE 10989 0.0020 (6/2932) 0 * Os_TE_613960 Os_TE_613960 Chr12 15335109 15335108 - ORSgTETN00200001 10994 0.0020 (6/2984) 0 * Os_TE_613961 Os_TE_613954 Chr12 15332169 15332480 - STOLAB 312 0.1663 (486/2922) 1 Intact * Os_TE_613953 Chr12 15332033 15332032 + STOWAWAY9_OS 235 0.0003 (1/2948) 0 * Os_TE_613952 Os_TE_613952 Chr12 15332031 15332032 - STOWAWAY9_OS 235 0.0003 (1/2974) 0 * Os_TE_613953 Os_TE_613945 Chr12 15328806 15328805 - TRUNCATOR 2918 0.1589 (471/2964) 0 * Os_TE_613944 Os_TE_613944 Chr12 15328805 15328806 + TRUNCATOR 2918 0.1611 (479/2974) 0 * Os_TE_613945 Os_TE_613923 Chr12 15319397 15319398 - COPIA2-LTR_OS 6433 0.0067 (20/2989) 0 * Os_TE_613922 Os_TE_613922 Chr12 15319393 15319392 + COPIA2-LTR_OS 6433 0.0064 (19/2989) 0 * Os_TE_613923 Os_TE_613915 Chr12 15316059 15316058 + SPMLIKE 10989 0.0855 (254/2970) 0 * * Os_TE_613897 Chr12 15310981 15310982 + RETROSAT4_LTR 13504 0.0024 (7/2903) 0 * Os_TE_613896 Os_TE_613896 Chr12 15310977 15310976 - SZ-35LTR 3853 0.0024 (7/2926) 0 * Os_TE_613897 Os_TE_613891 Chr12 15308742 15288967 + GYPSY-B_LTR 7068 0.4724 (1412/2989) 1 Intact Os_TE_613872 Os_TE_613872 Chr12 15288965 15308741 - GYPSY-B_LTR 7068 0.4721 (1412/2991) 1 Intact Os_TE_613891 Os_TE_613871 Chr12 15287996 15287997 + SPMLIKE 10989 0.3899 (1008/2585) 0 * * Os_TE_613867 Chr12 15287200 15287201 - ORSgTERT00200036 376 0.0015 (2/1355) -1 * * Os_TE_613863 Chr12 15285805 15285806 + SPMLIKE 10989 0.1135 (339/2987) 0 * * Os_TE_613862 Chr12 15285732 15285731 + TRUNCATOR 2918 0.0023 (7/2985) 0 * Os_TE_613861 Os_TE_613861 Chr12 15285731 15285732 - TRUNCATOR 2918 0.0020 (6/2988) 0 * Os_TE_613862 Os_TE_613859 Chr12 15285608 15285607 + SEVERIN-2 1952 0.0080 (24/2991) 0 * * Os_TE_613858 Chr12 15285607 15285608 - SEVERIN-2 1952 0.0060 (18/2987) 0 * Os_TE_613857 Os_TE_613857 Chr12 15285601 15285600 + SEVERIN-2 1952 0.0010 (3/2972) 0 * Os_TE_613858 Os_TE_613856 Chr12 15285490 15285491 - SEVERIN-2 1952 0.0773 (228/2950) 0 * * Os_TE_613854 Chr12 15285447 15285448 + TRUNCATOR 2918 0.0037 (11/2964) 0 * * Os_TE_613805 Chr12 15262214 15262213 + TRUNCATOR 2918 0.0014 (4/2931) 0 * * Os_TE_613797 Chr12 15259530 15259531 + RIREX_LTR 8828 0.0007 (2/2909) 0 * Os_TE_613796 Os_TE_613796 Chr12 15259526 15259525 - RIREX_LTR 8828 0.0007 (2/2908) 0 * Os_TE_613797 Os_TE_613795 Chr12 15259420 15259421 + TELIA 141 0.0007 (2/2907) 0 * Os_TE_613794 Os_TE_613794 Chr12 15259412 15259411 - TELIA 141 0.0007 (2/2865) 0 * Os_TE_613795 Os_TE_613793 Chr12 15259382 15259383 - ORSgTERT00201216 11284 0.0043 (12/2786) 0 * * Os_TE_613786 Chr12 15251523 15251522 + COPIA1-LTR_OS 9292 0.5970 (1572/2633) 0 * * Os_TE_613779 Chr12 15247679 15247678 + ORSiTERTOOT00112 4608 0.1092 (327/2994) 0 * * Os_TE_613778 Chr12 15247416 15247415 - TRUNCATOR 2918 0.1142 (338/2961) 0 * * Os_TE_613772 Chr12 15245944 15245795 - STOWAWAY1_OS 149 0.3709 (1109/2990) 1 Intact Os_TE_613770 Os_TE_613770 Chr12 15245793 15245946 + ORSgTEMT01701591 154 0.3657 (1095/2994) 1 Intact Os_TE_613772 Os_TE_613763 Chr12 15242751 15242750 - COPIA2-LTR_OS 6433 0.0004 (1/2812) 0 * * Os_TE_613761 Chr12 15242626 15242417 - ORSgTEMT01400022 212 0.5786 (1122/1939) 1 Intact * Os_TE_613754 Chr12 15241371 15241372 - OSTE20 496 0.0017 (2/1184) 0 * Os_TE_613753 Os_TE_613753 Chr12 15241366 15241365 + OSTE20 496 0.0007 (2/2977) 0 * Os_TE_613754 Os_TE_613752 Chr12 15240888 15240887 - SZ-62LTR 3649 0.0004 (1/2738) 0 * * Os_TE_613751 Chr12 15240649 15240053 + DS-RICE4N 715 0.3674 (1099/2991) 1 Intact Os_TE_613749 Os_TE_613749 Chr12 15240060 15240635 + ORSiTETN00100011 676 0.7022 (1132/1612) 1 Intact Os_TE_613751 Os_TE_613748 Chr12 15240053 15240649 + DS-RICE4N 715 0.3725 (1110/2980) 1 Intact * Os_TE_613747 Chr12 15240045 15240649 + ORSiTETN00100018 738 0.3710 (1109/2989) 1 Intact * Os_TE_613746 Chr12 15239088 15239089 - TRUNCATOR2_LTR 2904 0.1813 (535/2951) 0 * * Os_TE_613718 Chr12 15221875 15221874 + ORSgTEMT01602181 239 0.0041 (12/2909) 0 * * Os_TE_613707 Chr12 15218881 15218882 + EnSpm-9_OS 8955 0.0896 (268/2992) 0 * Os_TE_613706 Os_TE_613706 Chr12 15218879 15218878 - EnSpm-9_OS 8955 0.0921 (276/2998) 0 * Os_TE_613707 Os_TE_613695 Chr12 15215507 15215147 - ENSPM4_OS 11610 0.3817 (1128/2955) 1 Intact Os_TE_613694 Os_TE_613694 Chr12 15215146 15215506 + ENSPM4_OS 11610 0.4066 (1119/2752) 1 Intact Os_TE_613695 Os_TE_613687 Chr12 15214434 15214435 - DS-RICE2N 613 0.0086 (13/1506) 0 * * Os_TE_613682 Chr12 15212660 15212661 + COPIA2-LTR_OS 6433 0.0022 (6/2734) 0 * Os_TE_613681 Os_TE_613681 Chr12 15212656 15212655 - COPIA2-LTR_OS 6433 0.0020 (6/2979) 0 * Os_TE_613682 Os_TE_613680 Chr12 15212523 15212524 + TRUNCATOR2_LTR 2904 0.0088 (26/2951) 0 * Os_TE_613679 Os_TE_613679 Chr12 15212519 15212518 - TRUNCATOR2_LTR 2904 0.0152 (45/2964) 0 * Os_TE_613680 Os_TE_613678 Chr12 15212358 15212359 + SPMLIKE 10989 0.2087 (622/2981) 0 * Os_TE_613677 Os_TE_613677 Chr12 15212356 15212355 - ORSgTETN00200001 10994 0.1889 (550/2911) 0 * Os_TE_613678 Os_TE_613671 Chr12 15209134 15209135 + DS-RICE3N 525 0.0013 (4/2993) 0 * * Os_TE_613668 Chr12 15208643 15208642 - RIREX_LTR 8828 0.2131 (636/2985) 0 * * Os_TE_613585 Chr12 15176136 15176137 - ORSgTETN00200001 10994 0.0013 (4/2985) 0 * * Os_TE_613574 Chr12 15171352 15171353 - RIREX_LTR 8828 0.0024 (4/1690) 0 * Os_TE_613573 Os_TE_613573 Chr12 15171348 15171347 + RIREX_LTR 8828 0.0024 (4/1678) 0 * Os_TE_613574 Os_TE_613559 Chr12 15164529 15164530 - GYPSY1-LTR_OS 8900 0.0006 (1/1728) 0 * * Os_TE_613548 Chr12 15156542 15156543 - ENSPM6_OS 9815 0.0104 (31/2993) 0 * * Os_TE_613540 Chr12 15154872 15154873 - RIREX_LTR 8828 0.0013 (4/2969) 0 * Os_TE_613539 Os_TE_613539 Chr12 15154868 15154867 + RIREX_LTR 8828 0.0013 (4/2969) 0 * Os_TE_613540 Os_TE_613537 Chr12 15154793 15154794 - TRUNCATOR 2918 0.0097 (29/2982) 0 * * Os_TE_613536 Chr12 15154653 15154654 + ORSgTEMT00600272 361 0.0014 (4/2943) 0 * * Os_TE_613524 Chr12 15141049 15141050 - COPI2_LTR 4733 0.0003 (1/2991) 0 * Os_TE_613523 Os_TE_613523 Chr12 15141045 15141044 + COPI2_LTR 4733 0.0003 (1/2989) 0 * Os_TE_613524 Os_TE_613512 Chr12 15134654 15134655 + ORSiTERTOOT00296 5553 0.0064 (19/2988) 0 * Os_TE_613511 Os_TE_613511 Chr12 15134650 15134649 - SC-3_LTR 5748 0.0064 (19/2989) 0 * Os_TE_613512 Os_TE_613504 Chr12 15132168 15132169 - RETROSAT2LTR 12796 0.0017 (5/2994) 0 * * Os_TE_613494 Chr12 15126846 15126845 - ORSiTERTOOT00250 3262 0.0003 (1/2988) 0 * Os_TE_613493 Os_TE_613493 Chr12 15126836 15126837 + ORSiTERTOOT00226 792 0.0003 (1/2986) 0 * Os_TE_613494 Os_TE_613481 Chr12 15125045 15125044 + SPMLIKE 10989 0.0017 (5/2990) 0 * * Os_TE_613479 Chr12 15124695 15124696 - ORSgTETN00200001 10994 0.0779 (232/2979) 0 * Os_TE_613478 Os_TE_613478 Chr12 15124693 15124692 + SPMLIKE 10989 0.0839 (251/2992) 0 * Os_TE_613479 Os_TE_613470 Chr12 15118882 15113850 + ORSgTETNOOT00032 218 0.4406 (1094/2483) 1 Intact * Os_TE_613395 Chr12 15067179 15067178 - TRUNCATOR 2918 0.2881 (710/2464) -1 * * Os_TE_613372 Chr12 15064113 15064114 - TRUNCATOR 2918 0.0046 (9/1973) 0 * * Os_TE_613345 Chr12 15054441 15054442 - ORSgTEMT01602413 239 0.0020 (6/2973) 0 * * Os_TE_613328 Chr12 15048257 15048258 - RIRE2_LTR 11306 0.0684 (204/2982) 0 * Os_TE_613327 Os_TE_613327 Chr12 15048253 15048252 - ORSgTERT00201216 11284 0.0688 (205/2978) 0 * Os_TE_613328 Os_TE_613300 Chr12 15036846 15036847 - ORSgTEMT01400014 209 0.0021 (6/2881) 0 * * Os_TE_613295 Chr12 15036204 15032224 - TRUNCATOR 2918 0.1782 (504/2828) 1 Intact * Os_TE_613262 Chr12 15021389 15021390 - TRUNCATOR2_LTR 2904 0.2873 (855/2976) 0 * * Os_TE_613229 Chr12 15006153 15006154 - RIREX_LTR 8828 0.0007 (2/2789) 0 * Os_TE_613228 Os_TE_613228 Chr12 15006149 15006148 + RIREX_LTR 8828 0.0007 (2/2792) 0 * Os_TE_613229 Os_TE_613223 Chr12 15003238 15003239 - RIREX_LTR 8828 0.0033 (3/902) 0 * * Os_TE_613100 Chr12 14965299 14965300 - ORSgTETN00200001 10994 0.2764 (818/2960) 0 * Os_TE_613099 Os_TE_613099 Chr12 14965297 14965296 + SPMLIKE 10989 0.2853 (851/2983) 0 * Os_TE_613100 Os_TE_613081 Chr12 14957407 14957408 - SZ-35LTR 3853 0.0020 (6/2988) 0 * Os_TE_613080 Os_TE_613080 Chr12 14957403 14957402 + RETROSAT4_LTR 13504 0.0017 (5/2994) 0 * Os_TE_613081 Os_TE_613079 Chr12 14956808 14956809 - TRUNCATOR2_LTR 2904 0.0681 (204/2994) 0 * Os_TE_613078 Os_TE_613078 Chr12 14956804 14956803 + TRUNCATOR2_LTR 2904 0.0672 (201/2993) 0 * Os_TE_613079 Os_TE_613076 Chr12 14956444 14956445 - RIREX_LTR 8828 0.0007 (2/2995) 0 * * Os_TE_613059 Chr12 14951720 14951721 - RIREX_LTR 8828 0.0007 (2/2747) 0 * * Os_TE_613056 Chr12 14951130 14951129 - ENSPM4_OS 11610 0.0017 (4/2418) 0 * * Os_TE_613038 Chr12 14942839 14942840 + CACTA-H 1152 0.0012 (3/2445) 0 * * Os_TE_613036 Chr12 14942683 14942682 - SEVERIN-2 1952 0.0020 (6/2992) 0 * * Os_TE_613031 Chr12 14941293 14941294 - ORSgTETN00200001 10994 0.0007 (2/2994) 0 * Os_TE_613030 Os_TE_613030 Chr12 14941291 14941290 + SPMLIKE 10989 0.0007 (2/2992) 0 * Os_TE_613031 Os_TE_613016 Chr12 14936943 14936942 + TRUNCATOR 2918 0.0070 (21/2998) 0 * Os_TE_613015 Os_TE_613015 Chr12 14936942 14936943 - TRUNCATOR 2918 0.0067 (20/2998) 0 * Os_TE_613016 Os_TE_613014 Chr12 14936490 14936491 + COPIA2-LTR_OS 6433 0.0007 (2/2992) 0 * Os_TE_613013 Os_TE_613013 Chr12 14936486 14936485 - COPIA2-LTR_OS 6433 0.0007 (2/2994) 0 * Os_TE_613014 Os_TE_612998 Chr12 14930378 14930379 + SPMLIKE 10989 0.0003 (1/2984) 0 * * Os_TE_612973 Chr12 14918765 14918766 - ORSgTETNOOT02565 240 0.0020 (6/2975) 0 * Os_TE_612972 Os_TE_612972 Chr12 14918762 14918761 + ORSgTETNOOT00012 241 0.0020 (6/2974) 0 * Os_TE_612973 Os_TE_612971 Chr12 14918706 14918707 + OSTONOR1_LTR 6440 0.0007 (2/2959) 0 * Os_TE_612970 Os_TE_612970 Chr12 14918702 14918701 - OSTONOR1_LTR 6440 0.0007 (2/2976) 0 * Os_TE_612971 Os_TE_612956 Chr12 14912676 14912675 + ORSgTEMT02700001 255 0.0023 (7/2994) 0 * Os_TE_612955 Os_TE_612955 Chr12 14912675 14912676 - STOWAWAY14_OS 258 0.0023 (7/2993) 0 * Os_TE_612956 Os_TE_612922 Chr12 14893178 14893177 + ORSgTEMT00901202 248 0.0020 (6/2958) 0 * Os_TE_612921 Os_TE_612921 Chr12 14893174 14893175 + ORSgTEMT00901798 232 0.0020 (6/2963) 0 * Os_TE_612922 Os_TE_612920 Chr12 14892980 14892981 - RETRO1_LTR 8314 0.0010 (3/2886) 0 * Os_TE_612919 Os_TE_612919 Chr12 14892976 14892975 + RETRO1_LTR 8314 0.0010 (3/2911) 0 * Os_TE_612920 Os_TE_612918 Chr12 14892646 14892647 + TRUNCATOR2_LTR 2904 0.0007 (2/2964) 0 * * Os_TE_612911 Chr12 14886422 14886423 + AMYLTP 383 0.0021 (6/2842) 0 * Os_TE_612910 Os_TE_612910 Chr12 14886414 14886413 - AMYLTP 383 0.0022 (6/2778) 0 * Os_TE_612911 Os_TE_612901 Chr12 14882644 14882643 + SZ-38 8643 0.0011 (3/2763) 0 * * Os_TE_612900 Chr12 14882585 14882586 - UNIQUE 158 0.0003 (1/2864) 0 * * Os_TE_612891 Chr12 14881309 14881310 + OSTE33 1012 0.0017 (5/2994) 0 * Os_TE_612890 Os_TE_612890 Chr12 14881300 14881299 + OSTE33 1012 0.0017 (5/2996) 0 * Os_TE_612891 Os_TE_612887 Chr12 14881126 14881125 - STOWAWAY9_OS 235 0.0003 (1/2999) 0 * * Os_TE_612874 Chr12 14876312 14876313 + SPMLIKE 10989 0.0875 (256/2927) 0 * Os_TE_612873 Os_TE_612873 Chr12 14876310 14876309 - ORSgTETN00200001 10994 0.0826 (240/2904) 0 * Os_TE_612874 Os_TE_612872 Chr12 14876259 14876260 + ENSPM4_OS 11610 0.0003 (1/2960) 0 * * Os_TE_612869 Chr12 14875886 14875887 - RIRE2_LTR 11306 0.0010 (3/2949) 0 * Os_TE_612868 Os_TE_612868 Chr12 14875882 14875881 - ORSgTERT00201216 11284 0.0010 (3/2942) 0 * Os_TE_612869 Os_TE_612866 Chr12 14875780 14875779 - COPIA2-LTR_OS 6433 0.0003 (1/2962) 0 * * Os_TE_612852 Chr12 14870866 14870865 + TRUNCATOR 2918 0.0007 (2/2990) 0 * * Os_TE_612851 Chr12 14870277 14870278 - SZ-35LTR 3853 0.0007 (2/2974) 0 * Os_TE_612850 Os_TE_612850 Chr12 14870273 14870272 + RETROSAT4_LTR 13504 0.0007 (2/2977) 0 * Os_TE_612851 Os_TE_612837 Chr12 14863188 14863189 + RIREX_LTR 8828 0.0007 (2/2949) 0 * Os_TE_612836 Os_TE_612836 Chr12 14863184 14863183 - RIREX_LTR 8828 0.0007 (2/2948) 0 * Os_TE_612837 Os_TE_612835 Chr12 14862723 14862724 + TYPEU4 402 0.0003 (1/2944) 0 * * Os_TE_612823 Chr12 14860177 14860178 + NDNA1TNA_OS 334 0.0101 (6/594) 0 * Os_TE_612822 Os_TE_612822 Chr12 14860175 14860174 - NDNA1TNA_OS 334 0.0020 (6/2981) 0 * Os_TE_612823 Os_TE_612820 Chr12 14858266 14858267 - TELIA 141 0.0007 (2/2868) 0 * Os_TE_612819 Os_TE_612819 Chr12 14858258 14858257 + TELIA 141 0.0007 (2/2879) 0 * Os_TE_612820 Os_TE_612818 Chr12 14858242 14858243 + ORSgTETNOOT01225 240 0.0161 (47/2918) 0 * * Os_TE_612810 Chr12 14856038 14856039 - ORSgTEMT01600902 239 0.0010 (3/2938) 0 * * Os_TE_612808 Chr12 14855626 14855625 + RIRE2_LTR 11306 0.0007 (2/2778) 0 * * Os_TE_612803 Chr12 14853865 14853864 - COPIA2-LTR_OS 6433 0.0007 (2/2935) 0 * * Os_TE_612782 Chr12 14848833 14848834 + RETRO1_LTR 8314 0.0007 (2/2984) 0 * Os_TE_612781 Os_TE_612781 Chr12 14848829 14848828 - RETRO1_LTR 8314 0.0007 (2/2984) 0 * Os_TE_612782 Os_TE_612780 Chr12 14848745 14848746 - SZ-67LTR 1540 0.0847 (253/2986) 0 * Os_TE_612779 Os_TE_612779 Chr12 14848741 14848740 + SZ-67LTR 1540 0.0810 (242/2986) 0 * Os_TE_612780 Os_TE_612776 Chr12 14848147 14848146 - RETROSAT2LTR 12796 0.3545 (1054/2973) 0 * * Os_TE_612771 Chr12 14846717 14846718 - RETROSAT2LTRA 3112 0.0189 (48/2537) 0 * * Os_TE_612726 Chr12 14837363 14837364 - NDNA1TNA_OS 334 0.0010 (3/2990) 0 * Os_TE_612725 Os_TE_612725 Chr12 14837361 14837360 + NDNA1TNA_OS 334 0.0010 (3/2994) 0 * Os_TE_612726 Os_TE_612720 Chr12 14836608 14836607 - TRUNCATOR2_LTR 2904 0.0789 (235/2980) 0 * Os_TE_612719 Os_TE_612719 Chr12 14836607 14836608 - TRUNCATOR 2918 0.0710 (211/2970) 0 * Os_TE_612720 Os_TE_612710 Chr12 14834306 14833733 - SZ-33LTR 575 0.8985 (2683/2986) 1 Intact Os_TE_612708 Os_TE_612708 Chr12 14833733 14834306 + SZ-33LTR 575 0.8999 (2688/2987) 1 Intact Os_TE_612710 Os_TE_612702 Chr12 14832439 14832438 - ENSPM4_OS 11610 0.0007 (2/2995) 0 * * Os_TE_612701 Chr12 14831567 14831568 - TRUNCATOR2_LTR 2904 0.0010 (3/2966) 0 * Os_TE_612700 Os_TE_612700 Chr12 14831563 14831562 + ORSiTERTOOT00028 8600 0.0010 (3/2967) 0 * Os_TE_612701 Os_TE_612694 Chr12 14830622 14830623 + STOWAWAY13_OS 251 0.2551 (310/1215) 0 * Os_TE_612693 Os_TE_612693 Chr12 14830621 14830620 - STOWAWAY13_OS 251 0.6927 (1957/2825) 0 * Os_TE_612694 Os_TE_612635 Chr12 14793652 14793653 - COPI2_LTR 4733 0.0004 (1/2801) 0 * Os_TE_612634 Os_TE_612634 Chr12 14793648 14793647 + COPI2_LTR 4733 0.0004 (1/2800) 0 * Os_TE_612635 Os_TE_612631 Chr12 14792699 14779086 + ENSPM3_OS 10837 0.2086 (576/2761) 1 Intact Os_TE_612604 Os_TE_612604 Chr12 14779086 14792699 - ENSPM3_OS 10837 0.2107 (586/2781) 1 Intact Os_TE_612631 Os_TE_612587 Chr12 14772992 14772993 + RIRE3_LTR 12054 0.2882 (784/2720) 0 * Os_TE_612586 Os_TE_612586 Chr12 14772988 14772987 - RIRE3_LTR 12054 0.2988 (815/2728) 0 * Os_TE_612587 Os_TE_612580 Chr12 14771325 14771326 + COPIA2-LTR_OS 6433 0.0003 (1/2962) 0 * Os_TE_612579 Os_TE_612579 Chr12 14771321 14771320 - COPIA2-LTR_OS 6433 0.0005 (1/1974) 0 * Os_TE_612580 Os_TE_612575 Chr12 14770190 14770189 - RETRO2_LTR 12874 0.0030 (9/2959) 0 * * Os_TE_612570 Chr12 14767057 14767058 + ORSiCMCM00100019 2717 0.0073 (16/2185) 0 * * Os_TE_612548 Chr12 14756892 14756891 - MuDR-5_OS 17471 0.0007 (2/2976) 0 * * Os_TE_612547 Chr12 14756687 14756688 + SEVERIN-2 1952 0.0024 (7/2948) 0 * * Os_TE_612545 Chr12 14756315 14756316 - COPI2_LTR 4733 0.0024 (7/2860) 0 * Os_TE_612544 Os_TE_612544 Chr12 14756311 14756310 + COPI2_LTR 4733 0.0023 (7/2980) 0 * Os_TE_612545 Os_TE_612543 Chr12 14755446 14755447 + ORSgTERTOOT00009 12852 0.0013 (4/2969) 0 * * Os_TE_612539 Chr12 14754981 14754982 + RIREX_LTR 8828 0.0013 (4/2983) 0 * Os_TE_612538 Os_TE_612538 Chr12 14754977 14754976 - RIREX_LTR 8828 0.0013 (4/2982) 0 * Os_TE_612539 Os_TE_612533 Chr12 14753164 14753403 - ORSgTETNOOT02565 240 0.1934 (534/2761) 1 Intact * Os_TE_612517 Chr12 14747534 14747535 - RIREX_LTR 8828 0.0007 (2/2984) 0 * Os_TE_612516 Os_TE_612516 Chr12 14747530 14747529 + RIREX_LTR 8828 0.0007 (2/2986) 0 * Os_TE_612517 Os_TE_612465 Chr12 14736933 14736932 + TRUNCATOR 2918 0.4386 (1308/2982) 0 * Os_TE_612464 Os_TE_612464 Chr12 14736932 14736933 - TRUNCATOR 2918 0.4350 (1295/2977) 0 * Os_TE_612465 Os_TE_612463 Chr12 14736688 14736689 + ORSiTERTOOT00028 8600 0.0010 (3/2983) 0 * Os_TE_612462 Os_TE_612462 Chr12 14736684 14736683 - TRUNCATOR2_LTR 2904 0.0010 (3/2983) 0 * Os_TE_612463 Os_TE_612460 Chr12 14735909 14735908 + COPIA2-LTR_OS 6433 0.0003 (1/2982) 0 * * Os_TE_612459 Chr12 14735866 14735867 - SPMLIKE 10989 0.0010 (3/2986) 0 * Os_TE_612458 Os_TE_612458 Chr12 14735864 14735863 + SPMLIKE 10989 0.0010 (3/2987) 0 * Os_TE_612459 Os_TE_612437 Chr12 14727356 14727355 - TRUNCATOR 2918 0.4344 (1291/2972) 0 * Os_TE_612436 Os_TE_612436 Chr12 14727355 14727356 + TRUNCATOR 2918 0.4409 (1312/2976) 0 * Os_TE_612437 Os_TE_612410 Chr12 14723291 14723292 + COPI2_LTR 4733 0.0007 (2/2983) 0 * Os_TE_612409 Os_TE_612409 Chr12 14723287 14723286 - COPI2_LTR 4733 0.0007 (2/2984) 0 * Os_TE_612410 Os_TE_612404 Chr12 14722701 14722702 + COPIA2-LTR_OS 6433 0.0020 (6/2958) 0 * Os_TE_612403 Os_TE_612403 Chr12 14722697 14722696 - COPIA2-LTR_OS 6433 0.0020 (6/2963) 0 * Os_TE_612404 Os_TE_612401 Chr12 14722414 14722415 + RIREX_LTR 8828 0.0007 (2/2993) 0 * Os_TE_612400 Os_TE_612400 Chr12 14722410 14722409 - RIREX_LTR 8828 0.0007 (2/2989) 0 * Os_TE_612401 Os_TE_612397 Chr12 14721015 14721016 - RETRO2_LTR 12874 0.0014 (4/2957) 0 * * Os_TE_612384 Chr12 14716786 14716787 - RIREX_LTR 8828 0.0017 (5/2925) 0 * Os_TE_612383 Os_TE_612383 Chr12 14716782 14716781 + RIREX_LTR 8828 0.0017 (5/2928) 0 * Os_TE_612384 Os_TE_612379 Chr12 14713522 14713523 + ORSgTEMT01601036 240 0.0007 (2/2988) 0 * * Os_TE_612334 Chr12 14698814 14698815 - TRUNCATOR 2918 0.0019 (5/2633) 0 * * Os_TE_612319 Chr12 14696445 14696444 - ORSgTEMT01602404 253 0.0007 (2/2984) 0 * * Os_TE_612317 Chr12 14696243 14696244 - TRUNCATOR2_LTR 2904 0.0010 (3/2988) 0 * Os_TE_612316 Os_TE_612316 Chr12 14696239 14696238 + ORSiCMCM00100019 2717 0.0010 (3/2988) 0 * Os_TE_612317 Os_TE_612306 Chr12 14694645 14694644 - COPI2_LTR 4733 0.0004 (1/2841) 0 * * Os_TE_612301 Chr12 14693668 14693669 - RIREX_LTR 8828 0.0004 (1/2772) 0 * Os_TE_612300 Os_TE_612300 Chr12 14693664 14693663 + RIREX_LTR 8828 0.0004 (1/2830) 0 * Os_TE_612301 Os_TE_612294 Chr12 14690242 14690243 + ORSiCMCM00100019 2717 0.0891 (255/2862) 0 * * Os_TE_612287 Chr12 14689414 14689413 + MPING 430 0.0013 (4/2993) 0 * Os_TE_612286 Os_TE_612286 Chr12 14689397 14689398 - MPING 430 0.0013 (4/2994) 0 * Os_TE_612287 Os_TE_612285 Chr12 14689146 14689147 + AMYLTP 383 0.0010 (3/2991) 0 * Os_TE_612284 Os_TE_612284 Chr12 14689138 14689137 - AMYLTP 383 0.0010 (3/2994) 0 * Os_TE_612285 Os_TE_612278 Chr12 14687267 14687268 + ORSgTEMT00101341 314 0.0949 (263/2770) 0 * * Os_TE_612265 Chr12 14681595 14681594 + TRUNCATOR 2918 0.2881 (859/2982) 0 * Os_TE_612264 Os_TE_612264 Chr12 14681594 14681595 - TRUNCATOR 2918 0.2790 (830/2975) 0 * Os_TE_612265 Os_TE_612247 Chr12 14675262 14675263 - OSLINE1-2 7128 0.0003 (1/2989) 0 * * Os_TE_612245 Chr12 14675078 14671146 - SZ-35LTR 3853 0.1521 (454/2985) 1 Intact Os_TE_612238 Os_TE_612238 Chr12 14671144 14675081 + RETROSAT4_LTR 13504 0.1444 (429/2970) 1 Solo_LTR Os_TE_612245 Os_TE_612235 Chr12 14669356 14669357 + RETRO2_LTR 12874 0.2049 (606/2957) 0 * Os_TE_612234 Os_TE_612234 Chr12 14669352 14669351 - RETRO2_LTR 12874 0.2001 (594/2969) 0 * Os_TE_612235 Os_TE_612227 Chr12 14666127 14666128 + SPMLIKE 10989 0.0013 (4/2983) 0 * Os_TE_612226 Os_TE_612226 Chr12 14666125 14666124 - ORSgTETN00200001 10994 0.0013 (4/2975) 0 * Os_TE_612227 Os_TE_612223 Chr12 14664825 14664824 - TRUNCATOR2_LTR 2904 0.0007 (2/2980) 0 * * Os_TE_612205 Chr12 14657985 14657986 - COPIA3-LTR_OS 5061 0.0008 (2/2442) 0 * Os_TE_612204 Os_TE_612204 Chr12 14657981 14657980 + COPIA3-LTR_OS 5061 0.0037 (9/2447) 0 * Os_TE_612205 Os_TE_612186 Chr12 14653008 14653007 - RIRE3_LTR 12054 0.0007 (2/2973) 0 * * Os_TE_612175 Chr12 14648251 14648252 - TRUNCATOR2_LTR 2904 0.2479 (601/2424) 0 * Os_TE_612174 Os_TE_612174 Chr12 14648247 14648246 + TRUNCATOR2_LTR 2904 0.2454 (596/2429) 0 * Os_TE_612175 Os_TE_612172 Chr12 14647436 14647437 + RIRE3_LTR 12054 0.0008 (2/2432) 0 * * Os_TE_612135 Chr12 14629379 14629380 + NDNA1TNA_OS 334 0.0017 (4/2349) 0 * * Os_TE_612103 Chr12 14620405 14620740 + ORSgTEMT00300129 365 0.1917 (441/2300) 1 Intact * Os_TE_612080 Chr12 14607840 14607839 + TRUNCATOR 2918 0.0659 (197/2988) 0 * Os_TE_612079 Os_TE_612079 Chr12 14607839 14607840 - TRUNCATOR 2918 0.0643 (192/2987) 0 * Os_TE_612080 Os_TE_612078 Chr12 14607635 14607636 - RIRE3_LTR 12054 0.0007 (2/2983) 0 * * Os_TE_612070 Chr12 14606539 14606538 - TELIA 141 0.6613 (1937/2929) 0 * Os_TE_612069 Os_TE_612069 Chr12 14606497 14606498 + TELIA 141 0.6658 (1958/2941) 0 * Os_TE_612070 Os_TE_612055 Chr12 14603739 14603740 + TRUNCATOR 2918 0.2769 (803/2900) 0 * * Os_TE_612054 Chr12 14602474 14602475 - MuDR2_OS 6770 0.0164 (15/916) 0 * Os_TE_612053 Os_TE_612053 Chr12 14602466 14602465 + MuDR2_OS 6770 0.0047 (14/2990) 0 * Os_TE_612054 Os_TE_612049 Chr12 14599878 14599879 - ORSgTETN00200001 10994 0.0047 (14/2990) 0 * Os_TE_612048 Os_TE_612048 Chr12 14599876 14599875 + SPMLIKE 10989 0.0053 (16/2991) 0 * Os_TE_612049 Os_TE_612047 Chr12 14599376 14599377 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * * Os_TE_612043 Chr12 14598934 14598933 - COPIA2-LTR_OS 6433 0.0003 (1/2965) 0 * * Os_TE_612042 Chr12 14598888 14598889 + ENSPM4_OS 11610 0.5572 (1627/2920) 0 * * Os_TE_611925 Chr12 14549115 14549116 + COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_611924 Os_TE_611924 Chr12 14549111 14549110 - COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_611925 Os_TE_611923 Chr12 14549105 14549106 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * * Os_TE_611921 Chr12 14548583 14548584 - SZ-52_LTR 13107 0.0007 (2/2744) 0 * Os_TE_611920 Os_TE_611920 Chr12 14548579 14548578 + SZ-52_LTR 13107 0.0007 (2/2992) 0 * Os_TE_611921 Os_TE_611917 Chr12 14548293 14548292 - RIRE3A_LTR 10580 0.0909 (272/2991) 0 * * Os_TE_611915 Chr12 14547985 14547986 - SZ-35LTR 3853 0.0010 (3/2965) 0 * * Os_TE_611912 Chr12 14547208 14547209 - ORSgTETN00200001 10994 0.2434 (728/2991) 0 * Os_TE_611911 Os_TE_611911 Chr12 14547206 14547205 + SPMLIKE 10989 0.2394 (714/2982) 0 * Os_TE_611912 Os_TE_611904 Chr12 14541557 14541558 - TRUNCATOR2_LTR 2904 0.1007 (251/2493) 0 * * Os_TE_611854 Chr12 14525311 14525312 + RIRE3A_LTR 10580 0.1410 (412/2921) 0 * * Os_TE_611851 Chr12 14524683 14524684 - TRUNCATOR2_LTR 2904 0.1484 (362/2439) 0 * * Os_TE_611799 Chr12 14504762 14504763 - TRUNCATOR2_LTR 2904 0.3462 (252/728) -1 * * Os_TE_611787 Chr12 14499768 14499769 + RIREX_LTR 8828 0.0017 (5/2975) 0 * * Os_TE_611778 Chr12 14497018 14497019 - DS-RICE2N 613 0.0007 (2/2983) 0 * * Os_TE_611776 Chr12 14496984 14496983 + ORSgTETNOOT02577 232 0.0023 (7/2987) 0 * * Os_TE_611766 Chr12 14493710 14493711 - SEVERIN-2 1952 0.0007 (2/2976) 0 * * Os_TE_611756 Chr12 14487026 14487027 - RETRO1_LTR 8314 0.0007 (2/2977) 0 * * Os_TE_611731 Chr12 14478509 14478508 + SPMLIKE 10989 0.0007 (2/2992) 0 * * Os_TE_611730 Chr12 14478050 14478049 + CACTA-B 1103 0.0007 (2/2984) 0 * Os_TE_611729 Os_TE_611729 Chr12 14478049 14478050 - CACTA-H 1152 0.0007 (2/2995) 0 * Os_TE_611730 Os_TE_611702 Chr12 14464108 14464109 - COPIA2-LTR_OS 6433 0.0007 (2/2978) 0 * Os_TE_611701 Os_TE_611701 Chr12 14464104 14464103 + COPIA2-LTR_OS 6433 0.0007 (2/2974) 0 * Os_TE_611702 Os_TE_611692 Chr12 14459759 14459760 - ORSgTETN00200001 10994 0.0013 (4/2973) 0 * * Os_TE_611685 Chr12 14458395 14458396 + ORSiCMCM00100017 5674 0.0007 (2/2991) 0 * Os_TE_611684 Os_TE_611684 Chr12 14458391 14458390 - SZ-36LTR 5825 0.0007 (2/2992) 0 * Os_TE_611685 Os_TE_611679 Chr12 14452828 14452829 - SC-3_LTR 5748 0.0003 (1/2989) 0 * Os_TE_611678 Os_TE_611678 Chr12 14452824 14452823 + ORSiTERTOOT00296 5553 0.0003 (1/2993) 0 * Os_TE_611679 Os_TE_611676 Chr12 14451560 14451561 - COPI2_LTR 4733 0.0024 (7/2963) 0 * Os_TE_611675 Os_TE_611675 Chr12 14451556 14451555 + COPI2_LTR 4733 0.0024 (7/2966) 0 * Os_TE_611676 Os_TE_611668 Chr12 14447126 14442479 + COPIA1-LTR_OS 9292 0.1441 (432/2997) 1 Intact * Os_TE_611651 Chr12 14442258 14439123 + RETROSAT2LTRA 3112 0.1143 (335/2931) 1 Intact Os_TE_611648 Os_TE_611648 Chr12 14439123 14442258 - RETROSAT2LTRA 3112 0.1369 (409/2988) 1 Intact Os_TE_611651 Os_TE_611647 Chr12 14437680 14437681 - ORSgTETN00200001 10994 0.0075 (7/935) 0 * Os_TE_611646 Os_TE_611646 Chr12 14437678 14437677 + CACTA-H 1152 0.0024 (7/2974) 0 * Os_TE_611647 Os_TE_611645 Chr12 14437381 14437382 - COPIA2-LTR_OS 6433 0.0003 (1/2986) 0 * Os_TE_611644 Os_TE_611644 Chr12 14437377 14437376 + COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_611645 Os_TE_611630 Chr12 14432840 14432841 - RIREX_LTR 8828 0.1043 (312/2991) 0 * * Os_TE_611621 Chr12 14429267 14429268 - SZ-35LTR 3853 0.0017 (5/2995) 0 * * Os_TE_611596 Chr12 14422684 14422685 + ORSgTEMT00500864 109 0.0007 (2/2978) 0 * * Os_TE_611588 Chr12 14420083 14420082 - OSLINE1-4 4779 0.0777 (218/2804) 0 * * Os_TE_611582 Chr12 14419295 14419296 + ORSgTEMT00501356 145 0.0772 (231/2994) 0 * * Os_TE_611572 Chr12 14411800 14411801 + ORSgTEMT01600691 229 0.0749 (224/2990) 0 * * Os_TE_611570 Chr12 14410772 14410771 - RETRO2_LTR 12874 0.0020 (6/2991) 0 * * Os_TE_611547 Chr12 14400092 14400091 + RIREX_LTR 8828 0.0007 (2/2918) 0 * * Os_TE_611532 Chr12 14393988 14393987 + SPMLIKE 10989 0.0004 (1/2387) 0 * * Os_TE_611450 Chr12 14350275 14349365 - CACTA-I 1124 0.7776 (1203/1547) 1 Intact * Os_TE_611431 Chr12 14347877 14347878 + SPMLIKE 10989 0.0016 (2/1240) 0 * Os_TE_611430 Os_TE_611430 Chr12 14347875 14347874 - ORSgTETN00200001 10994 0.0016 (2/1239) 0 * Os_TE_611431 Os_TE_611362 Chr12 14324348 14324349 - RIRE3_LTR 12054 0.0021 (1/468) 0 * * Os_TE_611311 Chr12 14297545 14297544 - TRUNCATOR2_LTR 2904 0.1657 (399/2408) 0 * * Os_TE_611292 Chr12 14288841 14284963 + SZ-67LTR 1540 0.1548 (403/2604) 1 Intact Os_TE_611289 Os_TE_611289 Chr12 14284963 14288841 - SZ-67LTR 1540 0.1608 (419/2606) 1 Intact Os_TE_611292 Os_TE_611210 Chr12 14240952 14240953 + SPMLIKE 10989 0.0767 (228/2973) 0 * * Os_TE_611208 Chr12 14240830 14240831 - ORSgTERT00201216 11284 0.0013 (4/2981) 0 * Os_TE_611207 Os_TE_611207 Chr12 14240826 14240825 - RIRE2_LTR 11306 0.0013 (4/2979) 0 * Os_TE_611208 Os_TE_611193 Chr12 14233170 14233171 + ORSiCMCM00100019 2717 0.0003 (1/2996) 0 * * Os_TE_611164 Chr12 14223393 14223394 - RETROFIT_LTR 4866 0.0007 (2/2968) 0 * Os_TE_611163 Os_TE_611163 Chr12 14223390 14223389 + ORSiTERTOOT00033 4884 0.0007 (2/2974) 0 * Os_TE_611164 Os_TE_611083 Chr12 14185531 14185532 + ORSiTERTOOT00027 10853 0.0260 (77/2958) 0 * Os_TE_611082 Os_TE_611082 Chr12 14185527 14185526 - RIRE3A_LTR 10580 0.0326 (97/2971) 0 * Os_TE_611083 Os_TE_611077 Chr12 14184204 14184203 - TRUNCATOR 2918 0.1277 (357/2796) 0 * * Os_TE_611072 Chr12 14183428 14183429 - ORSgTEMT00500086 148 0.0007 (2/2904) 0 * * Os_TE_611044 Chr12 14167027 14167026 + COPIA2-LTR_OS 6433 0.0044 (13/2978) 0 * * Os_TE_611042 Chr12 14165565 14165564 + CACTA-B 1103 0.0007 (2/2970) 0 * * Os_TE_611035 Chr12 14163423 14163422 + ORSgTEMT01701816 154 0.0024 (7/2918) 0 * Os_TE_611034 Os_TE_611034 Chr12 14163420 14163421 + ORSgTEMT01701663 106 0.0044 (13/2942) 0 * Os_TE_611035 Os_TE_611031 Chr12 14162708 14162709 - TRUNCATOR2_LTR 2904 0.2577 (759/2945) 0 * Os_TE_611030 Os_TE_611030 Chr12 14162704 14162703 + ORSiCMCM00100019 2717 0.2436 (711/2919) 0 * Os_TE_611031 Os_TE_611028 Chr12 14161758 14161757 - ORSgTETN00200001 10994 0.0020 (5/2522) 0 * * Os_TE_611024 Chr12 14160091 14160092 - RIRE3A_LTR 10580 0.0008 (2/2528) 0 * Os_TE_611023 Os_TE_611023 Chr12 14160087 14160086 + ORSiTERTOOT00027 10853 0.0008 (2/2524) 0 * Os_TE_611024 Os_TE_611022 Chr12 14160016 14160017 - RIREX_LTR 8828 0.0063 (16/2528) 0 * Os_TE_611021 Os_TE_611021 Chr12 14160012 14160011 + RIREX_LTR 8828 0.0036 (9/2520) 0 * Os_TE_611022 Os_TE_611010 Chr12 14156037 14156038 - COPIA2-LTR_OS 6433 0.0005 (1/1825) 0 * Os_TE_611009 Os_TE_611009 Chr12 14156033 14156032 + COPIA2-LTR_OS 6433 0.0005 (1/1823) 0 * Os_TE_611010 Os_TE_610980 Chr12 14146468 14146469 - RIRE2_LTR 11306 0.0007 (2/2930) 0 * Os_TE_610979 Os_TE_610979 Chr12 14146464 14146463 - ORSgTERT00201216 11284 0.0007 (2/2963) 0 * Os_TE_610980 Os_TE_610926 Chr12 14117618 14117619 + RIREX_LTR 8828 0.0003 (1/2984) 0 * Os_TE_610925 Os_TE_610925 Chr12 14117614 14117613 - RIREX_LTR 8828 0.0003 (1/2983) 0 * Os_TE_610926 Os_TE_610920 Chr12 14113325 14113324 + ORSgTEMT01601983 238 0.0007 (2/2969) 0 * * Os_TE_610896 Chr12 14105396 14105397 + SEVERIN-2 1952 0.0842 (250/2969) 0 * * Os_TE_610895 Chr12 14104802 14104803 - MPING 430 0.0018 (5/2846) 0 * Os_TE_610894 Os_TE_610894 Chr12 14104800 14104799 + MPING 430 0.0017 (5/2983) 0 * Os_TE_610895 Os_TE_610887 Chr12 14102809 14102808 - RETROSAT2LTR 12796 0.0007 (2/2960) 0 * * Os_TE_610865 Chr12 14099092 14097921 + CACTA-B 1103 0.0964 (276/2864) 1 Intact Os_TE_610864 Os_TE_610864 Chr12 14097921 14099090 - ORSgTETN00200001 10994 0.1225 (360/2939) 1 Intact Os_TE_610865 Os_TE_610862 Chr12 14097841 14097840 - HARB-1_OS 5166 0.0003 (1/2968) 0 * * Os_TE_610859 Chr12 14095580 14095581 - TRUNCATOR2_LTR 2904 0.0003 (1/2942) 0 * * Os_TE_610830 Chr12 14090289 14090288 - NDNA1TNA_OS 334 0.0007 (2/2960) 0 * * Os_TE_610824 Chr12 14089400 14089401 + NDNA1TNA_OS 334 0.0013 (4/2995) 0 * Os_TE_610823 Os_TE_610823 Chr12 14089398 14089397 - NDNA1TNA_OS 334 0.0013 (4/2998) 0 * Os_TE_610824 Os_TE_610761 Chr12 14063432 14063433 + COPIA2-LTR_OS 6433 0.0020 (6/2986) 0 * Os_TE_610760 Os_TE_610760 Chr12 14063428 14063427 - COPIA2-LTR_OS 6433 0.0017 (5/2983) 0 * Os_TE_610761 Os_TE_610733 Chr12 14055334 14055333 - ORSgTEMT01701254 154 0.0047 (14/2979) 0 * Os_TE_610732 Os_TE_610732 Chr12 14055333 14055334 - STOWAWAY1_OS 149 0.0040 (12/2980) 0 * Os_TE_610733 Os_TE_610703 Chr12 14048966 14048967 - Cassandra_OS-LTR 764 0.0003 (1/2893) 0 * Os_TE_610702 Os_TE_610702 Chr12 14048964 14048963 - RETROSAT2LTR 12796 0.0003 (1/2899) 0 * Os_TE_610703 Os_TE_610680 Chr12 14033049 14033050 + ORSiTERTOOT00296 5553 0.0007 (2/2979) 0 * Os_TE_610679 Os_TE_610679 Chr12 14033045 14033044 - SC-3_LTR 5748 0.0007 (2/2980) 0 * Os_TE_610680 Os_TE_610677 Chr12 14032909 14032908 + SC-8_LTR 4951 0.0003 (1/2981) 0 * * Os_TE_610667 Chr12 14029288 14029289 + SUSU 279 0.0003 (1/2995) 0 * * Os_TE_610660 Chr12 14025191 14025190 + SZ-40LTR 2465 0.0020 (6/2970) 0 * * Os_TE_610638 Chr12 14012516 14012298 - ORSgTEMT00900741 219 0.1279 (383/2994) 1 Intact Os_TE_610635 Os_TE_610635 Chr12 14012269 14012514 - ORSgTEMT00901345 248 0.1257 (376/2992) 1 Intact Os_TE_610638 Os_TE_610600 Chr12 13997689 13997690 - RETRO2_LTR 12874 0.1583 (455/2875) 0 * * Os_TE_610599 Chr12 13997438 13997437 + ORSiCMCM00100019 2717 0.3746 (1069/2854) 0 * * Os_TE_610588 Chr12 13995570 13995569 + RETROSAT2LTR 12796 0.0008 (2/2490) 0 * * Os_TE_610587 Chr12 13994294 13994295 + TELIA 141 0.0004 (1/2743) 0 * Os_TE_610586 Os_TE_610586 Chr12 13994286 13994285 - TELIA 141 0.0004 (1/2733) 0 * Os_TE_610587 Os_TE_610547 Chr12 13983401 13983400 + OSMU5 4881 0.0007 (2/2955) 0 * * Os_TE_610512 Chr12 13970752 13970751 + RIREX_LTR 8828 0.0007 (2/2895) 0 * * Os_TE_610506 Chr12 13968045 13968046 + TRUNCATOR2_LTR 2904 0.3784 (1119/2957) 0 * Os_TE_610505 Os_TE_610505 Chr12 13968042 13968041 - TRUNCATOR2_LTR 2904 0.3903 (1167/2990) 0 * Os_TE_610506 Os_TE_610503 Chr12 13967464 13964044 + ORSiCMCM00100019 2717 0.1153 (344/2983) 1 Intact Os_TE_610498 Os_TE_610498 Chr12 13964044 13967464 - TRUNCATOR2_LTR 2904 0.1211 (362/2989) 1 Intact Os_TE_610503 Os_TE_610496 Chr12 13962189 13962188 - SEVERIN-2 1952 0.1447 (410/2834) 0 * * Os_TE_610465 Chr12 13948363 13948364 + YOUREN 286 0.0024 (7/2927) 0 * * Os_TE_610456 Chr12 13943782 13943781 + CACTA-H 1152 0.0007 (2/2994) 0 * * Os_TE_610398 Chr12 13915370 13915371 + COPI2_LTR 4733 0.0003 (1/2993) 0 * Os_TE_610397 Os_TE_610397 Chr12 13915366 13915365 - COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_610398 Os_TE_610396 Chr12 13913703 13913702 - ORSgTETNOOT01930 140 0.0023 (7/2994) 0 * * Os_TE_610385 Chr12 13909961 13909962 - TRUNCATOR2_LTR 2904 0.1947 (578/2969) 0 * * Os_TE_610380 Chr12 13909558 13909557 - ORSgTEMT02000041 194 0.1884 (534/2834) 0 * * Os_TE_610376 Chr12 13908852 13908853 + OSTE20 496 0.1915 (571/2981) 0 * Os_TE_610375 Os_TE_610375 Chr12 13908848 13908847 + OSTE20 496 0.1898 (566/2982) 0 * Os_TE_610376 Os_TE_610372 Chr12 13908298 13908297 - MERMITE18C 1473 0.0017 (5/2997) 0 * * Os_TE_610313 Chr12 13878952 13878953 + MDR2 6967 0.0017 (5/2990) 0 * Os_TE_610312 Os_TE_610312 Chr12 13878944 13878943 + MDR2 6967 0.0020 (6/2992) 0 * Os_TE_610313 Os_TE_610311 Chr12 13878923 13878924 + BAJIELTR 4500 0.0027 (8/2979) 0 * * Os_TE_610294 Chr12 13873419 13873420 - ENSPM5_OS 9581 0.0020 (6/2956) 0 * Os_TE_610293 Os_TE_610293 Chr12 13873417 13873416 + ENSPM6_OS 9815 0.0020 (6/2958) 0 * Os_TE_610294 Os_TE_610254 Chr12 13863869 13863870 + TRUNCATOR2_LTR 2904 0.0007 (2/2995) 0 * * Os_TE_610252 Chr12 13863832 13863833 - AMYLTP 383 0.0013 (4/2997) 0 * * Os_TE_610224 Chr12 13851604 13851605 + RIRE3A_LTR 10580 0.1238 (351/2836) 0 * * Os_TE_610218 Chr12 13849539 13849540 - TRUNCATOR2_LTR 2904 0.1502 (382/2543) -1 * * Os_TE_610181 Chr12 13829926 13829927 - MuDR4_OS 7610 0.7615 (1973/2591) 0 * Os_TE_610180 Os_TE_610180 Chr12 13829918 13829917 - MuDR4_OS 7610 0.7648 (1974/2581) 0 * Os_TE_610181 Os_TE_610174 Chr12 13822305 13822306 + MERMITEH 1307 0.0018 (5/2847) 0 * * Os_TE_610169 Chr12 13821969 13821970 - SC-8_LTR 4951 0.0003 (1/2994) 0 * Os_TE_610168 Os_TE_610168 Chr12 13821965 13821964 + SC-8_LTR 4951 0.0003 (1/2998) 0 * Os_TE_610169 Os_TE_610148 Chr12 13801855 13801856 - SZ-38 8643 0.0006 (1/1604) 0 * * Os_TE_610145 Chr12 13801057 13800640 + ORSgTEMT00300069 394 0.0949 (268/2824) 1 Intact * Os_TE_610141 Chr12 13799829 13799267 - SZ-33LTR 575 0.1043 (306/2934) 1 Intact * Os_TE_610119 Chr12 13788190 13788189 + TRUNCATOR 2918 0.0142 (35/2471) 0 * * Os_TE_610110 Chr12 13786861 13786862 + NDNA1TNA_OS 334 0.0017 (5/2995) 0 * * Os_TE_610103 Chr12 13785143 13785144 + RETRO2_LTR 12874 0.0036 (1/279) -1 * Os_TE_610102 Os_TE_610102 Chr12 13785139 13785138 - RETRO2_LTR 12874 0.1572 (436/2773) 0 * Os_TE_610103 Os_TE_610101 Chr12 13785135 13785136 + RETRO2_LTR 12874 0.1543 (434/2813) 0 * * Os_TE_610095 Chr12 13784021 13783787 - ORSgTEMT00901051 236 0.0920 (273/2968) 1 Intact Os_TE_610092 Os_TE_610092 Chr12 13783609 13784016 - ORSgTEMT00901387 241 0.1667 (284/1704) 1 Intact Os_TE_610095 Os_TE_610091 Chr12 13783438 13782787 - NDNA1TNA_OS 334 0.0958 (281/2933) 1 Intact Os_TE_610089 Os_TE_610089 Chr12 13782785 13783439 + ORSgTEMT00100531 325 0.0924 (271/2933) 1 Intact Os_TE_610091 Os_TE_610087 Chr12 13782646 13782645 + CLOUD-7 495 0.1476 (430/2913) 0 * * Os_TE_610078 Chr12 13778819 13778820 - SC-3_LTR 5748 0.7655 (2230/2913) 0 * Os_TE_610077 Os_TE_610077 Chr12 13778815 13778814 + SC-3_LTR 5748 0.7780 (2323/2986) 0 * Os_TE_610078 Os_TE_610073 Chr12 13777312 13777313 - SZ-54_LTR 5203 0.0010 (3/2970) 0 * * Os_TE_610061 Chr12 13768566 13768567 - SC-3_LTR 5748 0.0003 (1/2974) 0 * Os_TE_610060 Os_TE_610060 Chr12 13768562 13768561 + ORSiTERTOOT00296 5553 0.0003 (1/2975) 0 * Os_TE_610061 Os_TE_610057 Chr12 13765891 13765892 + SC-3_LTR 5748 0.7702 (2303/2990) 0 * Os_TE_610056 Os_TE_610056 Chr12 13765887 13765886 - SC-3_LTR 5748 0.7661 (2280/2976) 0 * Os_TE_610057 Os_TE_610049 Chr12 13764321 13764320 - ORSiTERTOOT00395 5349 0.1444 (432/2991) 0 * * Os_TE_610044 Chr12 13761318 13761317 + ORSgTEMT01602413 239 0.0091 (7/766) 0 * Os_TE_610043 Os_TE_610043 Chr12 13761314 13761315 - ORSgTEMT01602413 239 0.7651 (2274/2972) 0 * Os_TE_610044 Os_TE_610028 Chr12 13755543 13755542 + ORSiTERTOOT00226 792 0.0008 (2/2574) 0 * * Os_TE_610016 Chr12 13742234 13742233 - ORSiTERTOOT00301 9654 0.0595 (10/168) 0 * * Os_TE_610009 Chr12 13738705 13738706 - ENSPM2_OS 10580 0.8892 (2303/2590) 0 * * Os_TE_610007 Chr12 13738654 13738655 + RIRE3A_LTR 10580 0.1028 (264/2568) 0 * Os_TE_610006 Os_TE_610006 Chr12 13738650 13738649 - RIRE3A_LTR 10580 0.1110 (286/2577) 0 * Os_TE_610007 Os_TE_610004 Chr12 13738459 13738460 - SZ-36LTR 5825 0.1105 (285/2580) 0 * * Os_TE_609996 Chr12 13734086 13734085 + RIRE3_LTR 12054 0.0031 (8/2602) 0 * * Os_TE_609986 Chr12 13728241 13728242 + RETRO2_LTR 12874 0.0015 (4/2601) 0 * Os_TE_609985 Os_TE_609985 Chr12 13728237 13728236 - RETRO1_LTR 8314 0.0019 (5/2605) 0 * Os_TE_609986 Os_TE_609982 Chr12 13727180 13706410 - GYPSY1-LTR_OS 8900 0.1131 (297/2625) 1 Intact Os_TE_609931 Os_TE_609931 Chr12 13706410 13727180 + GYPSY1-LTR_OS 8900 0.2408 (720/2990) 1 Intact Os_TE_609982 Os_TE_609911 Chr12 13684559 13684560 - TRUNCATOR2_LTR 2904 0.0005 (1/1887) 0 * * Os_TE_609903 Chr12 13681032 13680657 - BUHUI 375 0.2472 (728/2945) 1 Intact Os_TE_609899 Os_TE_609899 Chr12 13680657 13681032 + BUHUI 375 0.2416 (720/2980) 1 Intact Os_TE_609903 Os_TE_609898 Chr12 13680493 13680494 - SZ-50_LTR 11691 0.7573 (2178/2876) 0 * Os_TE_609897 Os_TE_609897 Chr12 13680489 13680488 + RETROSOR2_LTR 11699 0.7731 (2300/2975) 0 * Os_TE_609898 Os_TE_609893 Chr12 13679635 13679634 + NDNA1TNA_OS 334 0.1429 (422/2954) 0 * Os_TE_609892 Os_TE_609892 Chr12 13679634 13679635 + ORSgTEMT00100272 356 0.1379 (408/2959) 0 * Os_TE_609893 Os_TE_609890 Chr12 13678146 13678145 + ORSiTERTOOT00028 8600 0.0004 (1/2764) 0 * * Os_TE_609889 Chr12 13677766 13677767 + GYPSY1-LTR_OS 8900 0.1419 (424/2987) 0 * Os_TE_609888 Os_TE_609888 Chr12 13677762 13677761 - GYPSY1-LTR_OS 8900 0.1432 (428/2988) 0 * Os_TE_609889 Os_TE_609865 Chr12 13672673 13672672 - MPING 430 0.0004 (1/2605) 0 * * Os_TE_609853 Chr12 13664753 13664754 - COPI2_LTR 4733 0.0017 (5/2892) 0 * Os_TE_609852 Os_TE_609852 Chr12 13664749 13664748 + COPI2_LTR 4733 0.0017 (5/2966) 0 * Os_TE_609853 Os_TE_609851 Chr12 13664254 13664255 + MuDR2_OS 6770 0.0013 (4/2978) 0 * Os_TE_609850 Os_TE_609850 Chr12 13664245 13664244 - MuDR2_OS 6770 0.0010 (3/2976) 0 * Os_TE_609851 Os_TE_609849 Chr12 13664167 13664166 + ORSgTEMT00101674 340 0.0020 (6/2984) 0 * Os_TE_609848 Os_TE_609848 Chr12 13664166 13664167 + NDNA1TNA_OS 334 0.0059 (6/1011) 0 * Os_TE_609849 Os_TE_609844 Chr12 13662144 13662145 - ORSiTERTOOT00371 5674 0.0065 (3/461) 0 * * Os_TE_609839 Chr12 13660771 13660772 + CACTA-H 1152 0.1416 (388/2741) 0 * Os_TE_609838 Os_TE_609838 Chr12 13660769 13660768 - ORSgTETN00200001 10994 0.1334 (399/2992) 0 * Os_TE_609839 Os_TE_609836 Chr12 13660594 13660595 + RIREX_LTR 8828 0.0003 (1/2993) 0 * Os_TE_609835 Os_TE_609835 Chr12 13660590 13660589 - RIREX_LTR 8828 0.0003 (1/2992) 0 * Os_TE_609836 Os_TE_609809 Chr12 13651038 13651037 - TYPEM 227 0.0024 (7/2958) 0 * * Os_TE_609788 Chr12 13644186 13644187 - RIRE3A_LTR 10580 0.0017 (5/2997) 0 * Os_TE_609787 Os_TE_609787 Chr12 13644182 13644181 + RIRE3A_LTR 10580 0.0020 (6/2998) 0 * Os_TE_609788 Os_TE_609782 Chr12 13640926 13640927 + ORSiTERTOOT00027 10853 0.0003 (1/2996) 0 * Os_TE_609781 Os_TE_609781 Chr12 13640922 13640921 - RIRE3A_LTR 10580 0.0003 (1/2994) 0 * Os_TE_609782 Os_TE_609777 Chr12 13640274 13640275 - RIRE2_LTR 11306 0.0013 (4/2979) 0 * Os_TE_609776 Os_TE_609776 Chr12 13640271 13640270 - ORSgTERT00201216 11284 0.0013 (4/2975) 0 * Os_TE_609777 Os_TE_609743 Chr12 13628428 13628429 + MDR2 6967 0.1330 (397/2986) 0 * * Os_TE_609741 Chr12 13628245 13628246 - COPIA2-LTR_OS 6433 0.0097 (29/2985) 0 * * Os_TE_609737 Chr12 13624450 13624451 + OSR42_LTR 5605 0.0121 (36/2984) 0 * Os_TE_609736 Os_TE_609736 Chr12 13624446 13624445 - OSR42_LTR 5605 0.0124 (37/2980) 0 * Os_TE_609737 Os_TE_609733 Chr12 13622719 13622720 + MDR2 6967 0.1075 (283/2633) 0 * Os_TE_609732 Os_TE_609732 Chr12 13622711 13622710 + MDR2 6967 0.1098 (289/2632) 0 * Os_TE_609733 Os_TE_609690 Chr12 13602911 13602912 - ORSgTERT00201216 11284 0.0020 (6/2987) 0 * * Os_TE_609686 Chr12 13601866 13601867 + COPIA2-LTR_OS 6433 0.0003 (1/2979) 0 * * Os_TE_609679 Chr12 13600460 13600461 + RIREX_LTR 8828 0.0003 (1/2931) 0 * Os_TE_609678 Os_TE_609678 Chr12 13600456 13600455 - RIREX_LTR 8828 0.0003 (1/2904) 0 * Os_TE_609679 Os_TE_609676 Chr12 13600392 13600393 + TRUNCATOR2_LTR 2904 0.0010 (3/2965) 0 * Os_TE_609675 Os_TE_609675 Chr12 13600388 13600387 - TRUNCATOR2_LTR 2904 0.0014 (4/2960) 0 * Os_TE_609676 Os_TE_609673 Chr12 13599698 13588415 - ORSgTERT00201216 11284 0.1083 (285/2631) 1 Intact Os_TE_609671 Os_TE_609671 Chr12 13588415 13599698 - RIRE2_LTR 11306 0.0988 (290/2935) 1 Intact Os_TE_609673 Os_TE_609666 Chr12 13587011 13587010 + RIRE3A_LTR 10580 0.0056 (16/2861) 0 * * Os_TE_609636 Chr12 13572900 13572899 + TRUNCATOR 2918 0.0004 (1/2686) 0 * * Os_TE_609620 Chr12 13565701 13565702 - ORSiTETNOOT00216 3569 0.0011 (3/2609) 0 * * Os_TE_609578 Chr12 13550423 13550422 + RIREX_LTR 8828 0.1312 (391/2981) 0 * * Os_TE_609573 Chr12 13549933 13549932 - RIRE3_LTR 12054 0.0030 (9/2998) 0 * * Os_TE_609568 Chr12 13547315 13547316 - ORSgTETN00200001 10994 0.0030 (9/2993) 0 * Os_TE_609567 Os_TE_609567 Chr12 13547313 13547312 + SPMLIKE 10989 0.0011 (2/1867) 0 * Os_TE_609568 Os_TE_609548 Chr12 13539097 13537786 - SETARIA1 1293 0.1007 (301/2990) 1 Intact Os_TE_609546 Os_TE_609546 Chr12 13537786 13539097 + SETARIA1 1293 0.1001 (299/2987) 1 Intact Os_TE_609548 Os_TE_609515 Chr12 13513867 13513469 + OSTE9 421 0.1475 (45/305) 1 Intact * Os_TE_609494 Chr12 13499295 13499294 - MDR2 6967 0.8772 (2057/2345) 0 * * Os_TE_609493 Chr12 13499127 13499128 + AMYLTP 383 0.5282 (1563/2959) 0 * Os_TE_609492 Os_TE_609492 Chr12 13499119 13499118 - AMYLTP 383 0.5204 (1527/2934) 0 * Os_TE_609493 Os_TE_609490 Chr12 13496597 13496598 + SC-8_LTR 4951 0.0003 (1/2896) 0 * Os_TE_609489 Os_TE_609489 Chr12 13496593 13496592 - SC-8_LTR 4951 0.0003 (1/2876) 0 * Os_TE_609490 Os_TE_609481 Chr12 13491903 13491904 + TWIF 586 0.1929 (560/2903) 0 * Os_TE_609480 Os_TE_609480 Chr12 13491896 13491895 - ORSiTETNOOT00200 3563 0.1461 (361/2471) 0 * Os_TE_609481 Os_TE_609479 Chr12 13491466 13490723 - CLOUD 734 0.1004 (297/2958) 1 Intact Os_TE_609478 Os_TE_609478 Chr12 13490723 13491466 - CLOUD 734 0.1536 (308/2005) 1 Intact Os_TE_609479 Os_TE_609476 Chr12 13490698 13490697 + MuDR4_OS 7610 0.8438 (1647/1952) 0 * * Os_TE_609471 Chr12 13487248 13483809 - TRUNCATOR2_LTR 2904 0.0992 (295/2973) 1 Intact * Os_TE_609462 Chr12 13483254 13483255 - RIRE2_LTR 11306 0.0103 (31/2996) 0 * Os_TE_609461 Os_TE_609461 Chr12 13483250 13483249 - ORSgTERT00201216 11284 0.0100 (30/2994) 0 * Os_TE_609462 Os_TE_609454 Chr12 13480975 13480976 + TRUNCATOR2_LTR 2904 0.0165 (49/2978) 0 * Os_TE_609453 Os_TE_609453 Chr12 13480971 13480970 - TRUNCATOR2_LTR 2904 0.0175 (52/2973) 0 * Os_TE_609454 Os_TE_609444 Chr12 13475764 13475765 - COPIA2-LTR_OS 6433 0.0007 (2/2994) 0 * * Os_TE_609441 Chr12 13474639 13474640 + TRUNCATOR 2918 0.7688 (2294/2984) 0 * Os_TE_609440 Os_TE_609440 Chr12 13474633 13474632 - ORSiTERT00200154 9386 0.7508 (2133/2841) 0 * Os_TE_609441 Os_TE_609420 Chr12 13468141 13461941 + COPIA2-LTR_OS 6433 0.0976 (290/2972) 1 Intact Os_TE_609418 Os_TE_609418 Chr12 13461941 13468141 - COPIA2-LTR_OS 6433 0.0964 (287/2978) 1 Intact Os_TE_609420 Os_TE_609416 Chr12 13460575 13454483 - ORSiTERTOOT00273 5419 0.0984 (294/2987) 1 Intact Os_TE_609410 Os_TE_609410 Chr12 13454483 13460575 + ORSiTERTOOT00273 5419 0.1015 (303/2985) 1 Intact Os_TE_609416 Os_TE_609409 Chr12 13453801 13453802 - COPIA2-LTR_OS 6433 0.1429 (411/2876) 0 * * Os_TE_609405 Chr12 13452444 13452445 + INDITTO 263 0.7691 (2282/2967) 0 * * Os_TE_609400 Chr12 13451437 13451436 + TRUNCATOR 2918 0.1493 (447/2993) 0 * * Os_TE_609395 Chr12 13448771 13448770 - RETRO1_LTR 8314 0.2445 (732/2994) 0 * * Os_TE_609394 Chr12 13447865 13447866 + F569 228 0.0812 (222/2733) 0 * Os_TE_609393 Os_TE_609393 Chr12 13447863 13447862 - F569 228 0.0798 (218/2731) 0 * Os_TE_609394 Os_TE_609278 Chr12 13372380 13372381 - RETRO2_LTR 12874 0.7329 (823/1123) 0 * * Os_TE_609211 Chr12 13333142 13333141 - TRUNCATOR2_LTR 2904 0.0065 (2/308) 0 * * Os_TE_609071 Chr12 13267534 13267535 - SEVERIN-2 1952 0.8827 (2257/2557) 0 * * Os_TE_609064 Chr12 13265702 13265703 - RIRE2_LTR 11306 0.0003 (1/2978) 0 * Os_TE_609063 Os_TE_609063 Chr12 13265698 13265697 + RIRE2_LTR 11306 0.0003 (1/2980) 0 * Os_TE_609064 Os_TE_609006 Chr12 13248740 13239438 + TESSBIG 4057 0.0978 (291/2976) 1 Intact * Os_TE_608990 Chr12 13237295 13237296 - SZ-40LTR 2465 0.0043 (4/928) -1 * * Os_TE_608929 Chr12 13210757 13210520 - DITAILA 257 0.1001 (299/2988) 1 Intact Os_TE_608928 Os_TE_608928 Chr12 13210520 13210755 + DITAILA 257 0.1028 (306/2977) 1 Intact Os_TE_608929 Os_TE_608914 Chr12 13205803 13205804 - ORSgTETN00200001 10994 0.2194 (627/2858) 0 * Os_TE_608913 Os_TE_608913 Chr12 13205801 13205800 + SPMLIKE 10989 0.2028 (506/2495) 0 * Os_TE_608914 Os_TE_608911 Chr12 13205211 13200551 + COPI1_LTR 4721 0.0986 (295/2993) 1 Intact Os_TE_608900 Os_TE_608900 Chr12 13200551 13205211 - SZ-25LTR 330 0.0991 (297/2996) 1 Intact Os_TE_608911 Os_TE_608896 Chr12 13199566 13199565 + NDNA1TNA_OS 334 0.1009 (267/2647) 0 * * Os_TE_608886 Chr12 13193452 13193451 + ORSgTEMT00101341 314 0.0109 (32/2947) 0 * * Os_TE_608877 Chr12 13191421 13191146 + SZ-28LTR 262 0.1047 (305/2913) 1 Intact * Os_TE_608874 Chr12 13190316 13190169 - ORSgTEMT00500167 148 0.0988 (295/2987) 0.93 Intact * Os_TE_608864 Chr12 13183032 13183709 + DS-RICE4N 715 0.2595 (302/1164) 1 Intact * Os_TE_608853 Chr12 13179399 13179400 + RIRE2_LTR 11306 0.0017 (5/2980) 0 * Os_TE_608852 Os_TE_608852 Chr12 13179395 13179394 - RIRE2_LTR 11306 0.0020 (6/2948) 0 * Os_TE_608853 Os_TE_608846 Chr12 13175476 13175477 - RIRE2_LTR 11306 0.0101 (30/2982) 0 * Os_TE_608845 Os_TE_608845 Chr12 13175472 13175471 - ORSgTERT00201216 11284 0.0104 (31/2983) 0 * Os_TE_608846 Os_TE_608842 Chr12 13174782 13174783 - ORSgTEMT02400179 221 0.0021 (6/2909) 0 * Os_TE_608841 Os_TE_608841 Chr12 13174781 13174780 - TYPEM 227 0.0021 (6/2912) 0 * Os_TE_608842 Os_TE_608840 Chr12 13174086 13173915 - ORSgTEMT01700216 124 0.6871 (2053/2988) 1 Intact Os_TE_608839 Os_TE_608839 Chr12 13173915 13174086 - ORSgTEMT01700029 143 0.6906 (2060/2983) 1 Intact Os_TE_608840 Os_TE_608837 Chr12 13173549 13173548 + ORSgTEMT01400031 216 0.3141 (926/2948) 0 * Os_TE_608836 Os_TE_608836 Chr12 13173540 13173541 + ORSgTEMT01400024 215 0.3281 (981/2990) 0 * Os_TE_608837 Os_TE_608835 Chr12 13173099 13166372 - RIREX_LTR 8828 0.6867 (2054/2991) 1 Intact Os_TE_608816 Os_TE_608816 Chr12 13166372 13173091 + RIREX_LTR 8828 0.6858 (2052/2992) 1 Intact Os_TE_608835 Os_TE_608810 Chr12 13161905 13161904 + ORSgTEMT01601122 212 0.3265 (974/2983) 0 * * Os_TE_608795 Chr12 13158121 13158120 - MuDR4_OS 7610 0.1309 (390/2980) 0 * * Os_TE_608779 Chr12 13152329 13141387 + SPMLIKE 10989 0.0955 (281/2941) 1 Intact * Os_TE_608769 Chr12 13141197 13141196 + ORSgTEMT01602181 239 0.0003 (1/2986) 0 * * Os_TE_608758 Chr12 13127100 13127101 - OSLINE1_2 6317 0.3663 (992/2708) 0 * * Os_TE_608756 Chr12 13126752 13126753 + CRM-LTR_OS 7749 0.0003 (1/2940) 0 * Os_TE_608755 Os_TE_608755 Chr12 13126748 13126747 - CRM-LTR_OS 7749 0.0003 (1/2968) 0 * Os_TE_608756 Os_TE_608735 Chr12 13124559 13124558 + RIREX_LTR 8828 0.0099 (29/2944) 0 * * Os_TE_608712 Chr12 13121834 13121835 - AMYLTP 383 0.0020 (6/2981) 0 * Os_TE_608711 Os_TE_608711 Chr12 13121829 13121828 + AMYLTP 383 0.0020 (6/2987) 0 * Os_TE_608712 Os_TE_608709 Chr12 13120756 13120757 - ORSiTERT00200154 9386 0.1954 (581/2974) 0 * Os_TE_608708 Os_TE_608708 Chr12 13120750 13120749 + TRUNCATOR 2918 0.2061 (617/2994) 0 * Os_TE_608709 Os_TE_608707 Chr12 13120749 13120750 - TRUNCATOR 2918 0.1958 (583/2977) 0 * * Os_TE_608681 Chr12 13110232 13110231 + ORSiTERTOOT00097 759 0.3261 (965/2959) 0 * Os_TE_608680 Os_TE_608680 Chr12 13110228 13110229 - ORSiTERTOOT00170 3719 0.3266 (969/2967) 0 * Os_TE_608681 Os_TE_608670 Chr12 13101943 13101944 + SEVERIN-2 1952 0.0007 (2/2994) 0 * * Os_TE_608668 Chr12 13100431 13100432 - COPIA2-LTR_OS 6433 0.0010 (3/2996) 0 * Os_TE_608667 Os_TE_608667 Chr12 13100427 13100426 + COPIA2-LTR_OS 6433 0.0010 (3/2994) 0 * Os_TE_608668 Os_TE_608664 Chr12 13098776 13098777 - GYPSY-A_LTR 8951 0.0023 (7/2992) 0 * Os_TE_608663 Os_TE_608663 Chr12 13098772 13098771 + GYPSY-A_LTR 8951 0.0023 (7/2993) 0 * Os_TE_608664 Os_TE_608662 Chr12 13098581 13098582 - SZ-9LTR 965 0.0023 (7/2984) 0 * Os_TE_608661 Os_TE_608661 Chr12 13098577 13098576 + SZ-14LTR 1193 0.0023 (7/2981) 0 * Os_TE_608662 Os_TE_608655 Chr12 13096704 13096703 + RIREX_LTR 8828 0.0813 (241/2965) 0 * * Os_TE_608579 Chr12 13056643 13056644 + ORSiTERTOOT00296 5553 0.0017 (5/2978) 0 * Os_TE_608578 Os_TE_608578 Chr12 13056639 13056638 - SC-3_LTR 5748 0.0013 (4/2981) 0 * Os_TE_608579 Os_TE_608564 Chr12 13049994 13049995 + SZ-22_LTR 4403 0.0010 (3/2976) 0 * Os_TE_608563 Os_TE_608563 Chr12 13049990 13049989 + ORSiTERTOOT00097 759 0.0010 (3/2980) 0 * Os_TE_608564 Os_TE_608523 Chr12 13030521 13030522 - RIREX_LTR 8828 0.0022 (6/2774) 0 * Os_TE_608522 Os_TE_608522 Chr12 13030517 13030516 + RIREX_LTR 8828 0.0022 (6/2772) -1 * Os_TE_608523 Os_TE_608521 Chr12 13029673 13029674 - ORSgTERT00200842 1080 0.0003 (1/2932) 0 * * Os_TE_608505 Chr12 13014554 13014555 - RIRE3A_LTR 10580 0.0004 (1/2579) 0 * * Os_TE_608435 Chr12 12984861 12984860 - TRUNCATOR 2918 0.0017 (5/2944) 0 * * Os_TE_608421 Chr12 12980318 12980317 + SZ-28LTR 262 0.0003 (1/2990) 0 * * Os_TE_608387 Chr12 12971081 12971082 + RIREX_LTR 8828 0.0003 (1/2997) 0 * Os_TE_608386 Os_TE_608386 Chr12 12971077 12971076 - RIREX_LTR 8828 0.0003 (1/2998) 0 * Os_TE_608387 Os_TE_608384 Chr12 12970641 12970640 + COPI1_LTR 4721 0.0023 (7/2996) 0 * * Os_TE_608366 Chr12 12965397 12965398 - ORSgTETNOOT00544 147 0.0030 (9/2973) 0 * Os_TE_608365 Os_TE_608365 Chr12 12965395 12965394 + ORSgTETNOOT00707 140 0.0030 (9/2981) 0 * Os_TE_608366 Os_TE_608364 Chr12 12965054 12964915 - OSTE18 129 0.1053 (315/2991) 1 Intact Os_TE_608362 Os_TE_608362 Chr12 12964913 12965052 + OSTE18 129 0.1032 (308/2984) 1 Intact Os_TE_608364 Os_TE_608358 Chr12 12962569 12962570 - TYPEM 227 0.0020 (6/2999) 0 * Os_TE_608357 Os_TE_608357 Chr12 12962568 12962567 - ORSgTEMT02400179 221 0.0020 (6/2997) 0 * Os_TE_608358 Os_TE_608355 Chr12 12960564 12960565 + ORSiTERTOOT00097 759 0.0003 (1/2992) 0 * Os_TE_608354 Os_TE_608354 Chr12 12960560 12960559 - SZ-22_LTR 4403 0.0003 (1/2992) 0 * Os_TE_608355 Os_TE_608317 Chr12 12938386 12938387 + SPMLIKE 10989 0.0007 (2/2719) 0 * * Os_TE_608272 Chr12 12919425 12919426 - ORSgTETNOOT00118 134 0.0003 (1/2902) 0 * * Os_TE_608271 Chr12 12919354 12919353 + STOWAWAY51_OS 246 0.0003 (1/2936) 0 * Os_TE_608270 Os_TE_608270 Chr12 12919348 12919349 - STOWAWAY51_OS 246 0.0003 (1/2950) 0 * Os_TE_608271 Os_TE_608269 Chr12 12919257 12919258 - MuDR2_OS 6770 0.1074 (314/2924) 0 * Os_TE_608268 Os_TE_608268 Chr12 12919248 12919247 + MuDR2_OS 6770 0.1142 (336/2942) 0 * Os_TE_608269 Os_TE_608258 Chr12 12913931 12913932 + ORSgTEMT00600376 329 0.0021 (6/2916) 0 * Os_TE_608257 Os_TE_608257 Chr12 12913926 12913925 + ORSgTEMT00600272 361 0.0024 (7/2957) 0 * Os_TE_608258 Os_TE_608253 Chr12 12912439 12912438 + OSTE18 129 0.0007 (2/2983) 0 * * Os_TE_608252 Chr12 12912334 12912333 - STOWAWAY51_OS 246 0.0007 (2/2989) 0 * Os_TE_608251 Os_TE_608251 Chr12 12912328 12912329 + STOWAWAY51_OS 246 0.0007 (2/2983) 0 * Os_TE_608252 Os_TE_608220 Chr12 12904691 12904690 - ORSgTERT00201216 11284 0.0020 (6/2996) 0 * * Os_TE_608219 Chr12 12904631 12904632 - NDNA1TNA_OS 334 0.0107 (32/2997) 0 * Os_TE_608218 Os_TE_608218 Chr12 12904629 12904628 + NDNA1TNA_OS 334 0.0103 (31/2999) 0 * Os_TE_608219 Os_TE_608109 Chr12 12845187 12845186 + ORSgTEMT01000005 227 0.0071 (1/141) -1 * * Os_TE_608097 Chr12 12833824 12833825 + TWIF 586 0.0017 (5/2859) 0 * * Os_TE_608093 Chr12 12832546 12832547 + RIREX_LTR 8828 0.0134 (40/2984) 0 * Os_TE_608092 Os_TE_608092 Chr12 12832542 12832541 - RIREX_LTR 8828 0.0134 (40/2984) 0 * Os_TE_608093 Os_TE_607984 Chr12 12801350 12801349 - SZ-22_LTR 4403 0.0003 (1/2966) 0 * * Os_TE_607945 Chr12 12786659 12786660 + COPIA2-LTR_OS 6433 0.0004 (1/2386) 0 * Os_TE_607944 Os_TE_607944 Chr12 12786655 12786654 - COPIA2-LTR_OS 6433 0.0004 (1/2386) 0 * Os_TE_607945 Os_TE_607930 Chr12 12784377 12784378 - ORSgTEMT06000198 187 0.0003 (1/2983) 0 * * Os_TE_607923 Chr12 12780340 12780341 - OSMU5 4881 0.0829 (29/350) 0 * Os_TE_607922 Os_TE_607922 Chr12 12780330 12780329 - OSMU5 4881 0.0980 (35/357) 0 * Os_TE_607923 Os_TE_607921 Chr12 12780015 12780016 + RETRO2A_LTR 12895 0.0054 (2/367) 0 * Os_TE_607920 Os_TE_607920 Chr12 12780011 12780010 - RETRO1_LTR 8314 0.0055 (2/364) 0 * Os_TE_607921 Os_TE_607668 Chr12 12696718 12690894 + SZ-36LTR 5825 0.1116 (333/2985) 1 Intact Os_TE_607665 Os_TE_607665 Chr12 12690894 12696718 - SZ-36LTR 5825 0.1118 (334/2987) 1 Intact Os_TE_607668 Os_TE_607640 Chr12 12688668 12688667 - ORSgTEMT00501144 154 0.0017 (5/2948) 0 * * Os_TE_607639 Chr12 12688627 12688628 + RIRE2_LTR 11306 0.1361 (403/2960) 0 * Os_TE_607638 Os_TE_607638 Chr12 12688623 12688622 - RIRE2_LTR 11306 0.1289 (382/2964) 0 * Os_TE_607639 Os_TE_607637 Chr12 12688616 12688617 - ENSPM4_OS 11610 0.0003 (1/2934) 0 * * Os_TE_607635 Chr12 12688462 12688461 + ORSgTEMT01400039 200 0.0010 (3/2984) 0 * * Os_TE_607612 Chr12 12681426 12681427 + RIREX_LTR 8828 0.0007 (2/2970) 0 * Os_TE_607611 Os_TE_607611 Chr12 12681422 12681421 - RIREX_LTR 8828 0.0007 (2/2976) 0 * Os_TE_607612 Os_TE_607448 Chr12 12629885 12629886 + ORSiTERTOOT00027 10853 0.0004 (1/2766) 0 * * Os_TE_607444 Chr12 12627907 12627908 - RIRE3_LTR 12054 0.0004 (1/2759) 0 * * Os_TE_607420 Chr12 12620431 12620432 - RIRE2_LTR 11306 0.0007 (2/2762) 0 * Os_TE_607419 Os_TE_607419 Chr12 12620427 12620426 - ORSgTERT00201216 11284 0.0007 (2/2760) 0 * Os_TE_607420 Os_TE_607417 Chr12 12620239 12620240 + GYPSO_LTR 9828 0.0018 (5/2767) 0 * Os_TE_607416 Os_TE_607416 Chr12 12620235 12620234 - GYPSO_LTR 9828 0.0018 (5/2770) 0 * Os_TE_607417 Os_TE_607415 Chr12 12620094 12620095 - TRUNCATOR2_LTR 2904 0.0007 (2/2752) 0 * Os_TE_607414 Os_TE_607414 Chr12 12620090 12620089 + ORSiTERTOOT00028 8600 0.0007 (2/2757) 0 * Os_TE_607415 Os_TE_607406 Chr12 12618671 12618672 + RIRE1_LTR 8322 0.0004 (1/2637) 0 * * Os_TE_607344 Chr12 12588541 12588542 + ORSgTEMT00900266 245 0.0020 (6/2998) 0 * * Os_TE_607335 Chr12 12585700 12585701 - MUDRN1_OS 764 0.0112 (33/2937) 0 * Os_TE_607334 Os_TE_607334 Chr12 12585692 12585691 + MUDRN1_OS 764 0.0110 (32/2900) 0 * Os_TE_607335 Os_TE_607291 Chr12 12575710 12575711 + GYPSY-A_LTR 8951 0.0010 (3/2915) 0 * Os_TE_607290 Os_TE_607290 Chr12 12575706 12575705 - SZ-40LTR 2465 0.0010 (3/2964) 0 * Os_TE_607291 Os_TE_607287 Chr12 12574423 12574424 + SEVERIN-2 1952 0.0017 (5/2983) 0 * * Os_TE_607277 Chr12 12571435 12572710 + RETRO2_LTR 12874 0.1106 (325/2938) 1 Solo_LTR * Os_TE_607272 Chr12 12565112 12565111 + ORSgTEMT00700017 386 0.0020 (6/2997) 0 * * Os_TE_607271 Chr12 12564333 12564334 - TRUNCATOR2_LTR 2904 0.0003 (1/2991) 0 * Os_TE_607270 Os_TE_607270 Chr12 12564329 12564328 + ORSiCMCM00100019 2717 0.0003 (1/2987) 0 * Os_TE_607271 Os_TE_607269 Chr12 12564182 12564181 - RIRE3_LTR 12054 0.0010 (3/2982) 0 * * Os_TE_607268 Chr12 12564103 12564104 + SZ-58LTR 114 0.0020 (6/2982) 0 * Os_TE_607267 Os_TE_607267 Chr12 12564099 12564098 - SZ-58LTR 114 0.0017 (5/2979) 0 * Os_TE_607268 Os_TE_607258 Chr12 12559767 12559768 + ORSgTETNOOT01998 254 0.2027 (591/2915) 0 * * Os_TE_607256 Chr12 12559736 12559737 + ORSgTETNOOT01834 251 0.0003 (1/2950) 0 * Os_TE_607255 Os_TE_607255 Chr12 12559734 12559733 + ORSgTETNOOT01834 251 0.0003 (1/2873) 0 * Os_TE_607256 Os_TE_607254 Chr12 12559558 12559557 + ORSgTEMT00900897 248 0.0017 (5/2968) 0 * Os_TE_607253 Os_TE_607253 Chr12 12559554 12559555 - ORSgTEMT00901528 250 0.0017 (5/2978) 0 * Os_TE_607254 Os_TE_607227 Chr12 12553207 12553206 + NDNA1TNA_OS 334 0.0020 (6/2964) 0 * * Os_TE_607219 Chr12 12552726 12552727 + OLO24 345 0.0020 (6/2964) 0 * * Os_TE_607165 Chr12 12525306 12525305 + TRUNCATOR 2918 0.2222 (663/2984) 0 * Os_TE_607164 Os_TE_607164 Chr12 12525305 12525306 - TRUNCATOR 2918 0.2216 (660/2978) 0 * Os_TE_607165 Os_TE_607161 Chr12 12524020 12510176 - SZ-52_LTR 13107 0.0992 (296/2985) 1 Intact Os_TE_607160 Os_TE_607160 Chr12 12510176 12524020 + SZ-52_LTR 13107 0.0995 (297/2985) 1 Intact Os_TE_607161 Os_TE_607158 Chr12 12509825 12509824 - RETROSAT2LTR 12796 0.0007 (2/2989) 0 * * Os_TE_607157 Chr12 12509433 12509434 - TRUNCATOR2_LTR 2904 0.0007 (2/2984) 0 * * Os_TE_607058 Chr12 12482657 12482658 - MuDR-5_OS 17471 0.8739 (2238/2561) 0 * * Os_TE_607051 Chr12 12474333 12474334 - COPIA2-LTR_OS 6433 0.0004 (1/2614) 0 * * Os_TE_606971 Chr12 12439168 12439169 - ORSiTETNOOT00134 607 0.0110 (33/2995) 0 * * Os_TE_606962 Chr12 12436627 12436628 - ORSiTERTOOT00441 4741 0.0021 (6/2875) 0 * Os_TE_606961 Os_TE_606961 Chr12 12436623 12436622 + ORSiTERTOOT00441 4741 0.0021 (6/2873) 0 * Os_TE_606962 Os_TE_606957 Chr12 12434687 12434686 + SPMLIKE 10989 0.0007 (2/2949) 0 * * Os_TE_606956 Chr12 12432390 12432391 + ORSgTETNOOT01834 251 0.0003 (1/2992) 0 * Os_TE_606955 Os_TE_606955 Chr12 12432388 12432387 + ORSgTETNOOT01998 254 0.0003 (1/2995) 0 * Os_TE_606956 Os_TE_606865 Chr12 12403142 12403887 - CLOUD 734 0.8619 (2540/2947) 1 Intact * Os_TE_606863 Chr12 12401742 12401741 - EnSpm-N2_OS 1282 0.1346 (401/2980) 0 * * Os_TE_606862 Chr12 12401035 12400826 + ORSgTEMT01400009 212 0.8701 (2579/2964) 1 Intact * Os_TE_606844 Chr12 12394022 12394023 - SC-3_LTR 5748 0.2229 (667/2992) 0 * Os_TE_606843 Os_TE_606843 Chr12 12394018 12394017 + ORSiTERTOOT00296 5553 0.2224 (666/2994) 0 * Os_TE_606844 Os_TE_606835 Chr12 12390500 12390501 - ORSgTERT00201216 11284 0.0020 (6/2972) 0 * Os_TE_606834 Os_TE_606834 Chr12 12390496 12390495 - RIRE2_LTR 11306 0.0023 (6/2642) 0 * Os_TE_606835 Os_TE_606833 Chr12 12389424 12389425 + SZ-62LTR 3649 0.0011 (3/2634) 0 * Os_TE_606832 Os_TE_606832 Chr12 12389420 12389419 - SZ-62LTR 3649 0.0011 (3/2633) 0 * Os_TE_606833 Os_TE_606831 Chr12 12388905 12388906 - ORSiTERT00100062 5674 0.0003 (1/2996) 0 * Os_TE_606830 Os_TE_606830 Chr12 12388901 12388900 + OSTONOR1_LTR 6440 0.0003 (1/2997) 0 * Os_TE_606831 Os_TE_606829 Chr12 12387770 12387771 + ORSiTERTOOT00034 791 0.0035 (10/2888) 0 * Os_TE_606828 Os_TE_606828 Chr12 12387766 12387765 - SZ-22_LTR 4403 0.0034 (10/2969) 0 * Os_TE_606829 Os_TE_606815 Chr12 12383318 12383319 + TWIFB1 3737 0.6063 (1386/2286) 0 * * Os_TE_606811 Chr12 12381645 12381646 + SC-8_LTR 4951 0.0003 (1/2963) 0 * * Os_TE_606807 Chr12 12378434 12378435 - RIRE2_LTR 11306 0.0003 (1/2986) 0 * * Os_TE_606804 Chr12 12378359 12378358 - RETRO1_LTR 8314 0.2034 (602/2959) 0 * * Os_TE_606710 Chr12 12362269 12362268 + TRUNCATOR 2918 0.2554 (667/2612) 0 * Os_TE_606709 Os_TE_606709 Chr12 12362268 12362269 - TRUNCATOR 2918 0.2210 (630/2851) 0 * Os_TE_606710 Os_TE_606694 Chr12 12359408 12359673 - ORSgTEMT00100734 317 0.8801 (2583/2935) 1 Intact * Os_TE_606680 Chr12 12356736 12356735 + COPIO_LTR 11693 0.0013 (4/2997) 0 * * Os_TE_606679 Chr12 12354185 12354184 - SZ-44LTR 1408 0.1367 (406/2970) 0 * * Os_TE_606674 Chr12 12353550 12353549 + SZ-28LTR 262 0.1350 (400/2962) 0 * Os_TE_606673 Os_TE_606673 Chr12 12353538 12353539 - SZ-28LTR 262 0.1386 (411/2965) 0 * Os_TE_606674 Os_TE_606665 Chr12 12349355 12349356 + TRUNCATOR2_LTR 2904 0.0013 (3/2294) 0 * Os_TE_606664 Os_TE_606664 Chr12 12349351 12349350 - TRUNCATOR2_LTR 2904 0.0013 (3/2311) 0 * Os_TE_606665 Os_TE_606652 Chr12 12346200 12346063 + ORSgTEMT00500982 150 0.8789 (2621/2982) 1 Intact * Os_TE_606646 Chr12 12345344 12345343 + RIRE3A_LTR 10580 0.0091 (23/2531) 0 * * Os_TE_606642 Chr12 12344635 12344636 - RIRE3_LTR 12054 0.0014 (4/2933) 0 * Os_TE_606641 Os_TE_606641 Chr12 12344631 12344630 + RIRE3_LTR 12054 0.0015 (4/2645) 0 * Os_TE_606642 Os_TE_606635 Chr12 12337991 12337992 - RETRO1_LTR 8314 0.0008 (2/2622) 0 * Os_TE_606634 Os_TE_606634 Chr12 12337987 12337986 + RETRO1_LTR 8314 0.0008 (2/2618) 0 * Os_TE_606635 Os_TE_606633 Chr12 12336257 12331523 + RETRO2A_LTR 12895 0.1133 (298/2631) 1 Intact Os_TE_606630 Os_TE_606630 Chr12 12331523 12336257 - RETRO1_LTR 8314 0.1133 (298/2630) 1 Intact Os_TE_606633 Os_TE_606610 Chr12 12320352 12320353 - OSLINE1-2 7128 0.1350 (404/2993) 0 * * Os_TE_606593 Chr12 12305607 12305608 - ORSgTEMT02400246 177 0.1641 (432/2633) 0 * * Os_TE_606546 Chr12 12282425 12282424 + ORSiTERTOOT00226 792 0.0003 (1/2979) 0 * * Os_TE_606543 Chr12 12280495 12280494 - RIRE2_LTR 11306 0.1338 (400/2990) 0 * * Os_TE_606530 Chr12 12277787 12277788 + SPMLIKE 10989 0.1340 (399/2978) 0 * Os_TE_606529 Os_TE_606529 Chr12 12277785 12277784 - ORSgTETN00200001 10994 0.1216 (358/2944) 0 * Os_TE_606530 Os_TE_606522 Chr12 12276452 12276453 + RETRO2_LTR 12874 0.0134 (40/2974) 0 * * Os_TE_606518 Chr12 12276171 12276170 + ORSiTERTOOT00226 792 0.0013 (4/2990) 0 * * Os_TE_606516 Chr12 12275878 12275879 + RIREX_LTR 8828 0.0120 (36/2993) 0 * * Os_TE_606502 Chr12 12269228 12269229 - COPIA2-LTR_OS 6433 0.0003 (1/2927) 0 * * Os_TE_606500 Chr12 12268794 12268795 - F524 291 0.8700 (2530/2908) 0.86 * * Os_TE_606493 Chr12 12268425 12268570 + ORSgTEMT00501027 149 0.8801 (2607/2962) 1 Intact * Os_TE_606489 Chr12 12266200 12266057 + ORSgTEMT00500002 133 0.8768 (2627/2996) 1 Intact Os_TE_606488 Os_TE_606488 Chr12 12266048 12266198 + ORSgTEMT00500512 153 0.8763 (2622/2992) 1 Intact Os_TE_606489 Os_TE_606485 Chr12 12264648 12264649 + JINHUA 479 0.1273 (378/2970) 0 * * Os_TE_606484 Chr12 12264221 12264222 + CACTA-L 1162 0.1190 (352/2958) 0 * Os_TE_606483 Os_TE_606483 Chr12 12264219 12264218 - CACTA-L 1162 0.1316 (392/2978) 0 * Os_TE_606484 Os_TE_606480 Chr12 12263441 12263442 - SZ-22_LTR 4403 0.0025 (7/2839) 0 * Os_TE_606479 Os_TE_606479 Chr12 12263437 12263436 + ORSiTERTOOT00226 792 0.0024 (7/2958) 0 * Os_TE_606480 Os_TE_606477 Chr12 12262732 12262733 + OSTE18 129 0.1365 (401/2937) 0 * * Os_TE_606462 Chr12 12257167 12257028 + ORSgTEMT00500201 140 0.8728 (2587/2964) 1 Intact * Os_TE_606429 Chr12 12245728 12257025 - RIRE2_LTR 11306 0.8737 (2538/2905) 1 Intact * Os_TE_606427 Chr12 12245660 12245463 + ORSgTEMT01400024 215 0.8718 (2516/2886) 1 Intact Os_TE_606424 Os_TE_606424 Chr12 12245413 12245659 + ORSgTEMT01400024 215 0.8718 (2571/2949) 1 Intact Os_TE_606427 Os_TE_606422 Chr12 12244790 12244584 + ORSgTEMT02300007 256 0.8892 (2624/2951) 1 Intact * Os_TE_606407 Chr12 12241146 12240997 - STOWAWAY1_OS 149 0.8717 (2588/2969) 1 Intact Os_TE_606406 Os_TE_606406 Chr12 12240995 12241148 + ORSgTEMT01701224 156 0.8755 (2616/2988) 1 Intact Os_TE_606407 Os_TE_606382 Chr12 12231789 12231790 - ORSgTERT00201216 11284 0.0020 (6/2989) 0 * Os_TE_606381 Os_TE_606381 Chr12 12231785 12231784 - RIRE2_LTR 11306 0.0020 (6/2989) 0 * Os_TE_606382 Os_TE_606330 Chr12 12203364 12203365 - RIRE2_LTR 11306 0.0007 (2/2802) 0 * Os_TE_606329 Os_TE_606329 Chr12 12203360 12203359 - ORSgTERT00201216 11284 0.0007 (2/2783) 0 * Os_TE_606330 Os_TE_606316 Chr12 12195108 12194890 - ORSgTEMT00900864 217 0.8751 (2558/2923) 1 Intact * Os_TE_606312 Chr12 12194545 12194546 - RIREX_LTR 8828 0.1344 (399/2968) 0 * * Os_TE_606309 Chr12 12193859 12193860 - SZ-22_LTR 4403 0.0004 (1/2633) 0 * Os_TE_606308 Os_TE_606308 Chr12 12193855 12193854 + ORSiTERTOOT00226 792 0.0003 (1/2994) 0 * Os_TE_606309 Os_TE_606307 Chr12 12193844 12193845 + RETROSAT2LTRA 3112 0.1243 (369/2969) 0 * Os_TE_606306 Os_TE_606306 Chr12 12193841 12193840 - RETROSAT3_LTR 11537 0.1348 (403/2990) 0 * Os_TE_606307 Os_TE_606302 Chr12 12192886 12192887 - CRM-LTR_OS 7749 0.1350 (403/2986) 0 * Os_TE_606301 Os_TE_606301 Chr12 12192882 12192881 + CRM-LTR_OS 7749 0.1322 (395/2987) 0 * Os_TE_606302 Os_TE_606300 Chr12 12192866 12192867 + SPMLIKE 10989 0.0003 (1/2989) 0 * Os_TE_606299 Os_TE_606299 Chr12 12192864 12192863 - SPMLIKE 10989 0.0003 (1/2864) 0 * Os_TE_606300 Os_TE_606298 Chr12 12192553 12192554 + RIREX_LTR 8828 0.0004 (1/2634) 0 * Os_TE_606297 Os_TE_606297 Chr12 12192549 12192548 - RIREX_LTR 8828 0.1325 (396/2989) 0 * Os_TE_606298 Os_TE_606285 Chr12 12190263 12190264 - ORSgTERT00201216 11284 0.0023 (6/2627) 0 * Os_TE_606284 Os_TE_606284 Chr12 12190259 12190258 - RIRE2_LTR 11306 0.0023 (6/2625) 0 * Os_TE_606285 Os_TE_606283 Chr12 12190048 12190049 - RIREX_LTR 8828 0.0004 (1/2638) 0 * Os_TE_606282 Os_TE_606282 Chr12 12190044 12190043 + RIREX_LTR 8828 0.0004 (1/2635) 0 * Os_TE_606283 Os_TE_606275 Chr12 12188259 12188260 + RIRE3A_LTR 10580 0.1294 (384/2968) 0 * * Os_TE_606245 Chr12 12183909 12172078 - ORSiTERTOOT00269 10834 0.8765 (2618/2987) 1 Intact * Os_TE_606226 Chr12 12179573 12179572 + ORSiTERTOOT00226 792 0.0014 (4/2840) 0 * * Os_TE_606202 Chr12 12170800 12170801 + RIREX_LTR 8828 0.0004 (1/2619) 0 * Os_TE_606201 Os_TE_606201 Chr12 12170796 12170795 - RIREX_LTR 8828 0.0004 (1/2626) 0 * Os_TE_606202 Os_TE_606200 Chr12 12170621 12170622 - COPIA2-LTR_OS 6433 0.0004 (1/2598) 0 * Os_TE_606199 Os_TE_606199 Chr12 12170617 12170616 + COPIA2-LTR_OS 6433 0.0004 (1/2582) 0 * Os_TE_606200 Os_TE_606192 Chr12 12169442 12169441 - TRUNCATOR2_LTR 2904 0.2593 (670/2584) 0 * * Os_TE_606177 Chr12 12166951 12166952 + ORSgTETNOOT00908 242 0.0003 (1/2931) 0 * * Os_TE_606170 Chr12 12165854 12165855 + TRUNCATOR 2918 0.2988 (761/2547) 0 * * Os_TE_606085 Chr12 12124414 12124415 + RIREX_LTR 8828 0.0023 (6/2578) 0 * Os_TE_606084 Os_TE_606084 Chr12 12124410 12124409 - RIREX_LTR 8828 0.0019 (5/2606) 0 * Os_TE_606085 Os_TE_606082 Chr12 12124379 12124378 + RIREX_LTR 8828 0.1008 (263/2608) 0 * * Os_TE_606074 Chr12 12117400 12117401 + ORSiTERTOOT00226 792 0.0004 (1/2614) 0 * * Os_TE_606068 Chr12 12114323 12166085 - ORSiTERTOOT00270 8019 0.8680 (2380/2742) 1 Intact * Os_TE_606057 Chr12 12107675 12108454 + ORSiTERTOOT00034 791 0.1063 (300/2822) 0.7 Intact * Os_TE_606034 Chr12 12092009 12092010 - COPIA2-LTR_OS 6433 0.0009 (2/2309) 0 * Os_TE_606033 Os_TE_606033 Chr12 12092005 12092004 + COPIA2-LTR_OS 6433 0.0009 (2/2270) 0 * Os_TE_606034 Os_TE_606018 Chr12 12085397 12085708 - STOLAB 312 0.8723 (2610/2992) 1 Intact * Os_TE_605992 Chr12 12076378 12076379 + ORSiTERTOOT00296 5553 0.0003 (1/2981) 0 * Os_TE_605991 Os_TE_605991 Chr12 12076374 12076373 - SC-3_LTR 5748 0.0003 (1/2968) 0 * Os_TE_605992 Os_TE_605947 Chr12 12066789 12066788 + ORSiTERTOOT00226 792 0.0004 (1/2610) 0 * * Os_TE_605944 Chr12 12066041 12066040 - SZ-22_LTR 4403 0.0004 (1/2567) 0 * * Os_TE_605756 Chr12 11954322 11954323 - SZ-22_LTR 4403 0.0003 (1/2989) 0 * * Os_TE_605751 Chr12 11954285 11954284 + ORSiTERTOOT00226 792 0.0003 (1/2979) 0 * * Os_TE_605749 Chr12 11953951 11953952 - SZ-22_LTR 4403 0.0003 (1/2975) 0 * Os_TE_605748 Os_TE_605748 Chr12 11953947 11953946 + ORSiTERTOOT00226 792 0.0003 (1/2974) 0 * Os_TE_605749 Os_TE_605747 Chr12 11953438 11953439 + CRM-LTR_OS 7749 0.0989 (290/2932) 0 * * Os_TE_605718 Chr12 11949012 11949011 - CRM-LTR_OS 7749 0.0004 (1/2416) 0 * * Os_TE_605673 Chr12 11936058 11936059 - SZ-22_LTR 4403 0.0004 (1/2606) 0 * * Os_TE_605672 Chr12 11935949 11935950 - CRM-LTR_OS 7749 0.0003 (1/2982) 0 * * Os_TE_605662 Chr12 11934753 11934754 - SZ-22_LTR 4403 0.0007 (2/2991) 0 * * Os_TE_605660 Chr12 11934528 11934529 - RETROSAT2LTR 12796 0.2261 (672/2972) 0 * * Os_TE_605658 Chr12 11934383 11931437 - TRUNCATOR2_LTR 2904 0.8726 (2609/2990) 1 Intact Os_TE_605649 Os_TE_605649 Chr12 11931437 11934381 + TRUNCATOR2_LTR 2904 0.8672 (2559/2951) 1 Intact Os_TE_605658 Os_TE_605647 Chr12 11931321 11931320 + ORSiTERTOOT00226 792 0.0003 (1/2945) 0 * * Os_TE_605644 Chr12 11930892 11930891 + ORSiTERTOOT00226 792 0.0003 (1/2984) 0 * * Os_TE_605607 Chr12 11918727 11918728 + OLO24 345 0.1339 (311/2322) 0 * Os_TE_605605 Os_TE_605605 Chr12 11918670 11918669 + ORSgTEMT01601122 212 0.1484 (350/2359) 0 * Os_TE_605607 Os_TE_605603 Chr12 11916526 11916527 - SZ-22_LTR 4403 0.0004 (1/2421) 0 * Os_TE_605602 Os_TE_605602 Chr12 11916522 11916521 + ORSiTERTOOT00226 792 0.0004 (1/2427) 0 * Os_TE_605603 Os_TE_605599 Chr12 11908603 11908604 + STOWAWAY9_OS 235 0.0013 (3/2397) 0 * * Os_TE_605598 Chr12 11908586 11908587 - ORSiTETNOOT00200 3563 0.0021 (5/2371) 0 * Os_TE_605597 Os_TE_605597 Chr12 11908579 11908578 + TWIFBIG 3567 0.0017 (4/2349) 0 * Os_TE_605598 Os_TE_605583 Chr12 11903153 11903154 + INDITTO 263 0.3213 (675/2101) 0 * * Os_TE_605556 Chr12 11895301 11895302 - SZ-22_LTR 4403 0.0004 (1/2513) 0 * Os_TE_605555 Os_TE_605555 Chr12 11895297 11895296 + ORSiTERTOOT00226 792 0.0005 (1/2065) 0 * Os_TE_605556 Os_TE_605554 Chr12 11894405 11894406 + ORSiTERTOOT00226 792 0.0005 (1/2192) 0 * * Os_TE_605553 Chr12 11894295 11894296 + ORSiTERTOOT00097 759 0.0005 (1/2098) 0 * * Os_TE_605546 Chr12 11888714 11888715 + ORSiTERTOOT00226 792 0.0005 (1/1955) 0 * * Os_TE_605486 Chr12 11875039 11875040 - SZ-22_LTR 4403 0.0005 (1/2056) 0 * Os_TE_605485 Os_TE_605485 Chr12 11875035 11875034 + ORSiTERTOOT00226 792 0.0005 (1/2056) 0 * Os_TE_605486 Os_TE_605332 Chr12 11822753 11822752 + ORSiTERTOOT00226 792 0.0074 (1/136) -1 * * Os_TE_605158 Chr12 11788973 11788972 + ORSiTERTOOT00097 759 0.0054 (14/2606) 0 * * Os_TE_605088 Chr12 11772230 11772231 - SZ-22_LTR 4403 0.0003 (1/2980) 0 * Os_TE_605087 Os_TE_605087 Chr12 11772226 11772225 + ORSiTERTOOT00226 792 0.0003 (1/2926) 0 * Os_TE_605088 Os_TE_605006 Chr12 11754269 11754268 + ORSiTERTOOT00226 792 0.0018 (5/2743) 0 * * Os_TE_604961 Chr12 11744574 11744575 + TWIF 586 0.0003 (1/2964) 0 * Os_TE_604960 Os_TE_604960 Chr12 11744567 11744566 - ORSiTETNOOT00134 607 0.0003 (1/2969) 0 * Os_TE_604961 Os_TE_604959 Chr12 11744421 11744422 - CRM-LTR_OS 7749 0.0003 (1/2954) 0 * Os_TE_604958 Os_TE_604958 Chr12 11744417 11744416 + CRM-LTR_OS 7749 0.0003 (1/2964) 0 * Os_TE_604959 Os_TE_604938 Chr12 11736436 11736435 + ORSgTEMT02400014 229 0.2524 (752/2979) 0 * Os_TE_604937 Os_TE_604937 Chr12 11736432 11736433 - ORSgTEMT02400246 177 0.2527 (752/2976) 0 * Os_TE_604938 Os_TE_604934 Chr12 11731165 11731166 - ORSgTEMT01800105 452 0.1364 (406/2977) 0 * Os_TE_604933 Os_TE_604933 Chr12 11731162 11731161 - TYPEG 427 0.1374 (410/2983) 0 * Os_TE_604934 Os_TE_604931 Chr12 11730996 11730997 + OSTE20 496 0.0017 (5/2982) 0 * * Os_TE_604915 Chr12 11725072 11724739 - OLO24 345 0.8664 (2400/2770) 1 Intact * Os_TE_604908 Chr12 11723535 11723536 - ORSgTEMT01700507 154 0.0013 (4/2968) 0 * * Os_TE_604903 Chr12 11721254 11721253 + ORSgTEMT00901844 250 0.1373 (406/2957) 0 * Os_TE_604902 Os_TE_604902 Chr12 11721250 11721251 - ORSgTEMT00900075 250 0.1389 (412/2966) 0 * Os_TE_604903 Os_TE_604896 Chr12 11718350 11718351 - SC-3_LTR 5748 0.0003 (1/2983) 0 * Os_TE_604895 Os_TE_604895 Chr12 11718346 11718345 + ORSiTERTOOT00296 5553 0.0003 (1/2985) 0 * Os_TE_604896 Os_TE_604787 Chr12 11674302 11674303 - SZ-22_LTR 4403 0.0015 (3/2059) 0 * Os_TE_604786 Os_TE_604786 Chr12 11674298 11674297 + ORSiTERTOOT00226 792 0.0015 (3/2051) 0 * Os_TE_604787 Os_TE_604785 Chr12 11674133 11674134 + ORSiTERTOOT00034 791 0.0005 (1/2072) 0 * Os_TE_604784 Os_TE_604784 Chr12 11674129 11674128 - SZ-22_LTR 4403 0.0005 (1/2074) 0 * Os_TE_604785 Os_TE_604783 Chr12 11673792 11673793 + ORSiTERTOOT00097 759 0.0005 (1/2139) 0 * * Os_TE_604752 Chr12 11661744 11661745 - SZ-22_LTR 4403 0.0004 (1/2532) 0 * * Os_TE_604547 Chr12 11577601 11577602 - SZ-22_LTR 4403 0.0007 (2/2920) 0 * * Os_TE_604541 Chr12 11576350 11576351 + ORSiTERTOOT00226 792 0.0003 (1/2970) 0 * * Os_TE_604455 Chr12 11546370 11546371 - CRM-LTR_OS 7749 0.6857 (792/1155) 0 * * Os_TE_604153 Chr12 11421041 11420645 - ORSgTEMT01800105 452 0.8735 (2604/2981) 1 Intact Os_TE_604152 Os_TE_604152 Chr12 11420640 11421039 - ORSgTEMT01800105 452 0.8750 (2618/2992) 1 Intact Os_TE_604153 Os_TE_604113 Chr12 11394122 11390428 + SZ-40LTR 2465 0.8700 (2584/2970) 1 Intact * Os_TE_604077 Chr12 11380259 11380260 + RETROSAT2LTRA 3112 0.0025 (6/2372) 0 * Os_TE_604076 Os_TE_604076 Chr12 11380255 11380254 - RETROSAT2LTRA 3112 0.0021 (5/2375) 0 * Os_TE_604077 Os_TE_604073 Chr12 11379716 11379717 - TRSA_OS 353 0.0023 (1/429) -1 * * Os_TE_604070 Chr12 11379228 11379229 - COPIA2-LTR_OS 6433 0.0003 (1/2862) 0 * * Os_TE_604041 Chr12 11371755 11371756 + ORSiTERTOOT00296 5553 0.0003 (1/2952) 0 * Os_TE_604040 Os_TE_604040 Chr12 11371751 11371750 - SC-3_LTR 5748 0.0003 (1/2952) 0 * Os_TE_604041 Os_TE_604016 Chr12 11362022 11361705 - ORSgTEMT02900061 318 0.8720 (2568/2945) 1 Intact Os_TE_604013 Os_TE_604013 Chr12 11361705 11362031 + ORSgTEMT02900076 336 0.8743 (2608/2983) 1 Intact Os_TE_604016 Os_TE_604000 Chr12 11353500 11353501 + RIRE2_LTR 11306 0.0003 (1/2978) 0 * Os_TE_603999 Os_TE_603999 Chr12 11353496 11353495 - RIRE2_LTR 11306 0.0003 (1/2975) 0 * Os_TE_604000 Os_TE_603991 Chr12 11349983 11349984 - RIRE2_LTR 11306 0.0020 (6/2964) 0 * Os_TE_603990 Os_TE_603990 Chr12 11349979 11349978 + RIRE2_LTR 11306 0.0024 (7/2977) 0 * Os_TE_603991 Os_TE_603959 Chr12 11336559 11336558 + ORSiTERTOOT00226 792 0.0003 (1/2978) 0 * * Os_TE_603956 Chr12 11335378 11335379 - COPIA2-LTR_OS 6433 0.0007 (2/2999) 0 * * Os_TE_603953 Chr12 11333564 11333565 - Cassandra_OS-LTR 764 0.0010 (3/2967) 0 * * Os_TE_603900 Chr12 11317140 11317139 + COPIA2-LTR_OS 6433 0.0010 (3/2943) 0 * * Os_TE_603897 Chr12 11315210 11315211 + TRUNCATOR 2918 0.1559 (409/2624) 0 * * Os_TE_603844 Chr12 11300372 11300371 - SZ-22_LTR 4403 0.0004 (1/2633) 0 * * Os_TE_603816 Chr12 11290852 11290851 - ORSgTEMT01602413 239 0.1347 (397/2947) 0 * * Os_TE_603813 Chr12 11290636 11290637 - MuDR3_OS 8604 0.1269 (374/2948) 0 * * Os_TE_603812 Chr12 11290360 11290359 + ORSgTEMT01601591 242 0.0003 (1/2977) 0 * * Os_TE_603806 Chr12 11282594 11282595 - ORSgTERT00201216 11284 0.0024 (6/2463) 0 * * Os_TE_603804 Chr12 11281905 11281904 - TRUNCATOR 2918 0.0020 (6/2932) 0 * * Os_TE_603783 Chr12 11278353 11278352 - ORSgTEMT01601955 198 0.1281 (381/2974) 0 * Os_TE_603782 Os_TE_603782 Chr12 11278350 11278351 - ORSgTEMT01600639 228 0.1300 (388/2984) 0 * Os_TE_603783 Os_TE_603772 Chr12 11276516 11276517 - STOWAWAY1_OS 149 0.1369 (407/2972) 0 * Os_TE_603771 Os_TE_603771 Chr12 11276515 11276514 + STOWAWAY1_OS 149 0.1358 (403/2967) 0 * Os_TE_603772 Os_TE_603728 Chr12 11268950 11268949 + SZ-40LTR 2465 0.0020 (6/2985) 0 * * Os_TE_603727 Chr12 11268291 11268292 - SZ-46LTR 3360 0.1339 (400/2987) 0 * Os_TE_603726 Os_TE_603726 Chr12 11268287 11268286 + SZ-46LTR 3360 0.1338 (399/2981) 0 * Os_TE_603727 Os_TE_603725 Chr12 11267026 11267027 - RIREX_LTR 8828 0.0007 (2/2997) 0 * * Os_TE_603711 Chr12 11264395 11264396 - ORSgTETN00200001 10994 0.2705 (755/2791) 0 * Os_TE_603710 Os_TE_603710 Chr12 11264393 11264392 + SPMLIKE 10989 0.2770 (776/2801) 0 * Os_TE_603711 Os_TE_603709 Chr12 11264081 11264225 - TNR2A 152 0.8739 (2591/2965) 1 Intact * Os_TE_603701 Chr12 11261435 11261436 - CRATA 4786 0.0007 (2/2994) 0 * * Os_TE_603689 Chr12 11255997 11255998 + ORSiTERTOOT00381 4988 0.7664 (2297/2997) 0 * Os_TE_603688 Os_TE_603688 Chr12 11255993 11255992 - SC-8_LTR 4951 0.7643 (2286/2991) 0 * Os_TE_603689 Os_TE_603681 Chr12 11247567 11247568 - SC-3_LTR 5748 0.0003 (1/2993) 0 * Os_TE_603680 Os_TE_603680 Chr12 11247563 11247562 + ORSiTERTOOT00296 5553 0.0003 (1/2990) 0 * Os_TE_603681 Os_TE_603678 Chr12 11247281 11247282 - SC-3_LTR 5748 0.0003 (1/2993) 0 * Os_TE_603677 Os_TE_603677 Chr12 11247277 11247276 + ORSiTERTOOT00296 5553 0.0003 (1/2990) 0 * Os_TE_603678 Os_TE_603673 Chr12 11246373 11246374 - TRUNCATOR2_LTR 2904 0.7649 (2290/2994) 0 * Os_TE_603672 Os_TE_603672 Chr12 11246369 11246368 + TRUNCATOR2_LTR 2904 0.7575 (2240/2957) 0 * Os_TE_603673 Os_TE_603671 Chr12 11244856 11244857 - SC-3_LTR 5748 0.0003 (1/2986) 0 * Os_TE_603670 Os_TE_603670 Chr12 11244852 11244851 + ORSiTERTOOT00296 5553 0.0003 (1/2989) 0 * Os_TE_603671 Os_TE_603665 Chr12 11242447 11242446 - CRATA 4786 0.0009 (2/2215) 0 * * Os_TE_603649 Chr12 11240347 11239772 - SZ-33LTR 575 0.7157 (2092/2923) 1 Intact * Os_TE_603626 Chr12 11229560 11229561 + ORSiTERTOOT00381 4988 0.0003 (1/2975) 0 * Os_TE_603625 Os_TE_603625 Chr12 11229556 11229555 - SC-8_LTR 4951 0.0003 (1/2982) 0 * Os_TE_603626 Os_TE_603611 Chr12 11221854 11221853 + OSTE15 1168 0.0007 (2/2987) 0 * * Os_TE_603590 Chr12 11213874 11213875 - RIREX_LTR 8828 0.0017 (5/2982) 0 * Os_TE_603589 Os_TE_603589 Chr12 11213870 11213869 + RIREX_LTR 8828 0.0017 (5/2977) 0 * Os_TE_603590 Os_TE_603560 Chr12 11205665 11205664 - RIRE2_LTR 11306 0.0007 (2/2997) 0 * * Os_TE_603558 Chr12 11204084 11204085 - SC-3_LTR 5748 0.0003 (1/2993) 0 * * Os_TE_603556 Chr12 11203215 11203216 + SC-8_LTR 4951 0.0003 (1/2989) 0 * Os_TE_603555 Os_TE_603555 Chr12 11203211 11203210 - SC-8_LTR 4951 0.0003 (1/2990) 0 * Os_TE_603556 Os_TE_603549 Chr12 11200013 11200014 - SC-3_LTR 5748 0.0003 (1/2985) 0 * Os_TE_603548 Os_TE_603548 Chr12 11200009 11200008 + ORSiTERTOOT00296 5553 0.0003 (1/2985) 0 * Os_TE_603549 Os_TE_603526 Chr12 11192531 11192532 + ORSgTEMT00101315 319 0.0003 (1/2988) 0 * * Os_TE_603519 Chr12 11187155 11187156 + SC-8_LTR 4951 0.0007 (2/2989) 0 * Os_TE_603518 Os_TE_603518 Chr12 11187151 11187150 - SC-8_LTR 4951 0.0007 (2/2987) 0 * Os_TE_603519 Os_TE_603513 Chr12 11184870 11184869 - TYPEM 227 0.0003 (1/2969) 0 * Os_TE_603512 Os_TE_603512 Chr12 11184869 11184870 - ORSgTEMT02400246 177 0.0003 (1/2966) 0 * Os_TE_603513 Os_TE_603487 Chr12 11180347 11180348 + ORSiTERTOOT00398 5651 0.0023 (7/2996) 0 * * Os_TE_603473 Chr12 11174826 11174827 + RIREX_LTR 8828 0.0107 (32/2994) 0 * Os_TE_603472 Os_TE_603472 Chr12 11174822 11174821 - RIRE2_LTR 11306 0.0100 (30/2996) 0 * Os_TE_603473 Os_TE_603464 Chr12 11172912 11172913 - ORSgTERT00201216 11284 0.0100 (30/2996) 0 * Os_TE_603463 Os_TE_603463 Chr12 11172908 11172907 - RIRE2_LTR 11306 0.0100 (30/2995) 0 * Os_TE_603464 Os_TE_603461 Chr12 11172863 11172862 - RETRO1_LTR 8314 0.0716 (214/2987) 0 * * Os_TE_603428 Chr12 11158094 11158093 - TRUNCATOR 2918 0.0039 (3/765) 0 * Os_TE_603427 Os_TE_603427 Chr12 11158093 11158094 + TRUNCATOR 2918 0.0039 (3/767) 0 * Os_TE_603428 Os_TE_603392 Chr12 11135494 11135493 + ORSgTETNOOT00908 242 0.0020 (6/2992) 0 * * Os_TE_603388 Chr12 11135380 11135381 + ORSgTEMT01601591 242 0.0003 (1/2970) 0 * * Os_TE_603379 Chr12 11134183 11134184 + SEVERIN-2 1952 0.0010 (3/2887) 0 * * Os_TE_603370 Chr12 11129938 11129939 + ORSgTEMT01601591 242 0.0003 (1/2948) 0 * * Os_TE_603365 Chr12 11128904 11128905 + STOWAWAY51_OS 246 0.0003 (1/2957) 0 * * Os_TE_603364 Chr12 11128166 11128167 + SEVERIN-2 1952 0.0024 (5/2060) 0 * * Os_TE_603356 Chr12 11127416 11127417 - COPI2_LTR 4733 0.2584 (753/2914) 0 * Os_TE_603355 Os_TE_603355 Chr12 11127412 11127411 + COPI2_LTR 4733 0.0381 (88/2312) 0 * Os_TE_603356 Os_TE_603351 Chr12 11126481 11126482 + RETRO1_LTR 8314 0.0007 (2/2960) 0 * Os_TE_603350 Os_TE_603350 Chr12 11126477 11126476 - RETRO1_LTR 8314 0.0007 (2/2939) 0 * Os_TE_603351 Os_TE_603299 Chr12 11099454 11099455 - RIRE2_LTR 11306 0.0874 (259/2964) 0 * Os_TE_603298 Os_TE_603298 Chr12 11099450 11099449 - ORSgTERT00201216 11284 0.0875 (260/2971) 0 * Os_TE_603299 Os_TE_603297 Chr12 11098809 11098810 + INDITTO 263 0.1366 (409/2994) 0 * Os_TE_603296 Os_TE_603296 Chr12 11098807 11098806 + ORSgTETNOOT00221 261 0.1366 (409/2995) 0 * Os_TE_603297 Os_TE_603271 Chr12 11091313 11091314 - RIREX_LTR 8828 0.0003 (1/2983) 0 * * Os_TE_603259 Chr12 11082320 11082321 - SC-3_LTR 5748 0.0017 (5/2999) 0 * Os_TE_603258 Os_TE_603258 Chr12 11082316 11082315 + ORSiTERTOOT00296 5553 0.0017 (5/2998) 0 * Os_TE_603259 Os_TE_603249 Chr12 11080273 11080274 + MPING 430 0.0007 (2/2952) 0 * Os_TE_603248 Os_TE_603248 Chr12 11080271 11080270 - MPING 430 0.0007 (2/2990) 0 * Os_TE_603249 Os_TE_603246 Chr12 11080245 11080244 - INDITTO 263 0.0989 (296/2992) 0 * * Os_TE_603245 Chr12 11080158 11080159 + F569 228 0.0007 (2/2995) 0 * Os_TE_603244 Os_TE_603244 Chr12 11080156 11080155 - F569 228 0.0007 (2/2997) 0 * Os_TE_603245 Os_TE_603227 Chr12 11076689 11076688 + TELIA 141 0.0004 (1/2739) 0 * * Os_TE_603225 Chr12 11076199 11076200 + NDNA1TNA_OS 334 0.0003 (1/2993) 0 * Os_TE_603224 Os_TE_603224 Chr12 11076197 11076196 - NDNA1TNA_OS 334 0.0003 (1/2986) 0 * Os_TE_603225 Os_TE_603194 Chr12 11067632 11067633 + ORSiTERTOOT00381 4988 0.0003 (1/2990) 0 * Os_TE_603193 Os_TE_603193 Chr12 11067628 11067627 - SC-8_LTR 4951 0.0003 (1/2984) 0 * Os_TE_603194 Os_TE_603183 Chr12 11061781 11061780 + ORSgTETN00100072 209 0.0003 (1/2993) 0 * * Os_TE_603179 Chr12 11059788 11059787 + RETRO2_LTR 12874 0.0003 (1/2974) 0 * * Os_TE_603169 Chr12 11053165 11047605 - SC-3_LTR 5748 0.8614 (2572/2986) 1 Intact * Os_TE_603163 Chr12 11046558 11046559 - COPIA2-LTR_OS 6433 0.0003 (1/2979) 0 * * Os_TE_603160 Chr12 11046513 11046512 + COPIA2-LTR_OS 6433 0.0094 (28/2985) 0 * * Os_TE_603048 Chr12 10996515 10996516 - ORSgTEMT02400246 177 0.0003 (1/2974) 0 * * Os_TE_603028 Chr12 10986054 10986055 + AMYLTP 383 0.0576 (139/2412) 0 * * Os_TE_603013 Chr12 10979420 10979421 + SZ-40LTR 2465 0.0144 (43/2996) 0 * * Os_TE_602987 Chr12 10970317 10970318 - SC-3_LTR 5748 0.0003 (1/2994) 0 * * Os_TE_602975 Chr12 10959467 10959468 - MERMITEA 1710 0.0023 (7/2981) 0 * * Os_TE_602973 Chr12 10959229 10959230 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * * Os_TE_602970 Chr12 10958214 10958215 + ORSgTERTOOT00009 12852 0.0007 (2/2948) 0 * Os_TE_602969 Os_TE_602969 Chr12 10958210 10958209 - RETRO2_LTR 12874 0.0007 (2/2944) 0 * Os_TE_602970 Os_TE_602967 Chr12 10956870 10956871 + ORSgTETNOOT02019 240 0.0117 (35/2981) 0 * Os_TE_602966 Os_TE_602966 Chr12 10956866 10956865 + ORSgTETNOOT00908 242 0.0121 (36/2983) 0 * Os_TE_602967 Os_TE_602956 Chr12 10955413 10955412 + TRUNCATOR 2918 0.0003 (1/2971) 0 * * Os_TE_602948 Chr12 10952405 10952406 + RIRE2_LTR 11306 0.0003 (1/2992) 0 * Os_TE_602947 Os_TE_602947 Chr12 10952401 10952400 - RIRE2_LTR 11306 0.0003 (1/2992) 0 * Os_TE_602948 Os_TE_602920 Chr12 10942791 10942790 + ORSiTERTOOT00097 759 0.0007 (2/2854) 0 * * Os_TE_602914 Chr12 10940504 10940505 - SC-3_LTR 5748 0.0013 (4/2993) 0 * Os_TE_602913 Os_TE_602913 Chr12 10940500 10940499 + ORSiTERTOOT00296 5553 0.0013 (4/2990) 0 * Os_TE_602914 Os_TE_602908 Chr12 10937143 10937340 - ORSgTEMT02000041 194 0.2524 (752/2979) 1 Intact * Os_TE_602904 Chr12 10935066 10935067 + ORSgTEMT00600272 361 0.0241 (72/2985) 0 * Os_TE_602903 Os_TE_602903 Chr12 10935064 10935063 - ORSgTEMT00600524 364 0.0245 (73/2974) 0 * Os_TE_602904 Os_TE_602899 Chr12 10931078 10931077 - ORSgTETN00200001 10994 0.0020 (6/2998) 0 * * Os_TE_602892 Chr12 10929201 10929202 + RIREX_LTR 8828 0.0021 (6/2867) 0 * Os_TE_602891 Os_TE_602891 Chr12 10929197 10929196 - RIREX_LTR 8828 0.0021 (6/2864) 0 * Os_TE_602892 Os_TE_602890 Chr12 10929078 10929079 - CRM-LTR_OS 7749 0.0209 (56/2678) 0 * Os_TE_602889 Os_TE_602889 Chr12 10929074 10929073 + CRM-LTR_OS 7749 0.0197 (53/2685) 0 * Os_TE_602890 Os_TE_602888 Chr12 10928886 10928887 + SUSU 279 0.0024 (7/2920) 0 * Os_TE_602887 Os_TE_602887 Chr12 10928884 10928883 - SUSU 279 0.0010 (3/2968) 0 * Os_TE_602888 Os_TE_602816 Chr12 10908474 10908475 - OSTE20 496 0.0240 (71/2964) 0 * Os_TE_602815 Os_TE_602815 Chr12 10908470 10908469 + OSTE20 496 0.0236 (70/2962) 0 * Os_TE_602816 Os_TE_602812 Chr12 10907031 10907032 + ORSiTERTOOT00226 792 0.0003 (1/2979) 0 * * Os_TE_602810 Chr12 10906362 10906361 + CACTA-B 1103 0.0075 (22/2921) 0 * * Os_TE_602797 Chr12 10904188 10904189 - MDR2 6967 0.0074 (22/2969) 0 * Os_TE_602796 Os_TE_602796 Chr12 10904179 10904178 + MDR2 6967 0.0074 (22/2964) 0 * Os_TE_602797 Os_TE_602790 Chr12 10902820 10902819 + SINE03_OS 360 0.0044 (13/2941) 0 * * Os_TE_602786 Chr12 10900038 10900037 + ORSgTEMT01700768 151 0.2220 (665/2995) 0 * Os_TE_602785 Os_TE_602785 Chr12 10900035 10900036 + ORSgTEMT01701200 154 0.2224 (666/2995) 0 * Os_TE_602786 Os_TE_602774 Chr12 10895442 10895441 + ORSiTERTOOT00101 3870 0.0004 (1/2378) 0 * * Os_TE_602769 Chr12 10894381 10894382 - CRM-LTR_OS 7749 0.0334 (95/2845) 0 * Os_TE_602768 Os_TE_602768 Chr12 10894377 10894376 + CRM-LTR_OS 7749 0.0324 (90/2776) 0 * Os_TE_602769 Os_TE_602761 Chr12 10889023 10889022 + MUDRN5_OS 374 0.0004 (1/2287) 0 * * Os_TE_602760 Chr12 10888907 10884049 + OSTE15 1168 0.7655 (2282/2981) 1 Intact * Os_TE_602754 Chr12 10881130 10881131 - ORSgTEMT00600524 364 0.2548 (755/2963) 0 * Os_TE_602753 Os_TE_602753 Chr12 10881128 10881127 + ORSgTEMT00600272 361 0.2453 (725/2955) 0 * Os_TE_602754 Os_TE_602751 Chr12 10880347 10880348 + RETROSOR2_LTR 11699 0.2532 (755/2982) 0 * Os_TE_602750 Os_TE_602750 Chr12 10880343 10880342 - SZ-50_LTR 11691 0.2467 (731/2963) 0 * Os_TE_602751 Os_TE_602734 Chr12 10877603 10874216 + MERMITEB 1610 0.7658 (2279/2976) 1 Intact Os_TE_602724 Os_TE_602724 Chr12 10874216 10877601 - MERMITE18B 1306 0.6744 (1531/2270) 1 Intact Os_TE_602734 Os_TE_602723 Chr12 10874146 10873955 - COWARD-3 221 0.6760 (1546/2287) 1 Intact Os_TE_602721 Os_TE_602721 Chr12 10873956 10874145 + COWARD-2 350 0.7893 (2203/2791) 1 Intact Os_TE_602723 Os_TE_602719 Chr12 10873916 10873915 + SINE03_OS 360 0.2336 (653/2795) 0 * * Os_TE_602713 Chr12 10872902 10872901 + INDITTO 263 0.0007 (2/2945) 0 * * Os_TE_602712 Chr12 10872252 10872253 - MPING 430 0.0004 (1/2825) 0 * * Os_TE_602695 Chr12 10861632 10861633 - STOWAWAY43_OS 233 0.7044 (1599/2270) 0 * * Os_TE_602692 Chr12 10860372 10860373 + HEARTBLEEDING 326 0.2578 (763/2960) 0 * * Os_TE_602691 Chr12 10859461 10856609 - SEVERIN-2 1952 0.3344 (985/2946) 1 Intact * Os_TE_602686 Chr12 10858010 10858011 - RETRO2_LTR 12874 0.0014 (3/2203) 0 * * Os_TE_602683 Chr12 10857835 10857836 - SZ-67LTR 1540 0.0173 (26/1499) -1 * * Os_TE_602669 Chr12 10851403 10851404 + SC-8_LTR 4951 0.2504 (748/2987) 0 * Os_TE_602668 Os_TE_602668 Chr12 10851399 10851398 - SC-8_LTR 4951 0.2472 (738/2985) 0 * Os_TE_602669 Os_TE_602649 Chr12 10845287 10845288 + RIREX_LTR 8828 0.0009 (2/2345) 0 * * Os_TE_602628 Chr12 10834892 10834893 + STOWAWAY51_OS 246 0.0010 (2/2072) 0 * * Os_TE_602626 Chr12 10833705 10833704 + ORSgTEMT00300093 396 0.0308 (89/2890) 0 * * Os_TE_602625 Chr12 10833670 10833511 - ORSgTEMT01701366 170 0.7574 (2210/2918) 1 Intact Os_TE_602622 Os_TE_602622 Chr12 10833510 10833667 + ORSgTEMT01700637 157 0.7569 (2233/2950) 1 Intact Os_TE_602625 Os_TE_602601 Chr12 10823399 10823400 + COPI1_LTR 4721 0.0007 (2/2901) 0 * * Os_TE_602583 Chr12 10818020 10816870 + CACTA-I 1124 0.7706 (2251/2921) 1 Intact Os_TE_602582 Os_TE_602582 Chr12 10816870 10818020 - ORSgTETN00200001 10994 0.7832 (2283/2915) 1 Intact Os_TE_602583 Os_TE_602567 Chr12 10812662 10812661 + RIRE3_LTR 12054 0.0017 (5/2939) 0 * * Os_TE_602553 Chr12 10805244 10805245 - ORSiTETNOOT00216 3569 0.2150 (495/2302) 0 * * Os_TE_602550 Chr12 10804428 10804429 - HELITRON7_OS 10153 0.0007 (2/2943) 0 * * Os_TE_602549 Chr12 10804202 10804203 - ORSgTETN00200001 10994 0.1971 (561/2846) 0 * Os_TE_602548 Os_TE_602548 Chr12 10804200 10804199 + SPMLIKE 10989 0.2699 (657/2434) 0 * Os_TE_602549 Os_TE_602541 Chr12 10801896 10801897 + ORSiTERTOOT00097 759 0.0003 (1/2935) 0 * Os_TE_602540 Os_TE_602540 Chr12 10801892 10801891 - SZ-22_LTR 4403 0.0003 (1/2929) 0 * Os_TE_602541 Os_TE_602538 Chr12 10801502 10801503 + COPI2_LTR 4733 0.0003 (1/2930) 0 * Os_TE_602537 Os_TE_602537 Chr12 10801498 10801497 - COPI2_LTR 4733 0.0003 (1/2928) 0 * Os_TE_602538 Os_TE_602523 Chr12 10796477 10796861 + AMYLTP 383 0.4126 (1182/2865) 1 Intact * Os_TE_602491 Chr12 10785868 10785867 - ORSgTEMT00500675 140 0.2374 (697/2936) 0 * * Os_TE_602489 Chr12 10785669 10785670 + RIREX_LTR 8828 0.0003 (1/2980) 0 * Os_TE_602488 Os_TE_602488 Chr12 10785665 10785664 - RIREX_LTR 8828 0.0003 (1/2987) 0 * Os_TE_602489 Os_TE_602479 Chr12 10782541 10779680 - TRUNCATOR 2918 0.2179 (648/2974) 1 Intact Os_TE_602464 Os_TE_602464 Chr12 10779680 10782536 + TRUNCATOR 2918 0.2286 (670/2931) 1 Intact Os_TE_602479 Os_TE_602440 Chr12 10766015 10766203 - COWARD 200 0.2298 (670/2915) 1 Intact * Os_TE_602439 Chr12 10765712 10765713 + ORSiCMCM00100019 2717 0.0003 (1/2925) 0 * Os_TE_602438 Os_TE_602438 Chr12 10765708 10765707 - TRUNCATOR2_LTR 2904 0.0003 (1/2937) 0 * Os_TE_602439 Os_TE_602434 Chr12 10764774 10764775 + SZLTR 1249 0.0057 (17/2968) 0 * Os_TE_602433 Os_TE_602433 Chr12 10764770 10764769 - SZLTR 1249 0.0061 (18/2968) 0 * Os_TE_602434 Os_TE_602426 Chr12 10760981 10760982 - SC-3_LTR 5748 0.0003 (1/2997) 0 * Os_TE_602425 Os_TE_602425 Chr12 10760977 10760976 + ORSiTERTOOT00296 5553 0.0003 (1/2997) 0 * Os_TE_602426 Os_TE_602421 Chr12 10757991 10757990 - ORSgTEMT04200023 393 0.0043 (3/695) 0 * * Os_TE_602419 Chr12 10757622 10757484 + ORSgTEMT00501505 149 0.2508 (695/2771) 1 Intact Os_TE_602417 Os_TE_602417 Chr12 10757482 10757616 + ORSgTEMT00500476 150 0.2326 (693/2979) 1 Intact Os_TE_602419 Os_TE_602416 Chr12 10756226 10756227 + CASGRANDA 465 0.0003 (1/2963) 0 * * Os_TE_602415 Chr12 10755684 10755683 - RIRE2_LTR 11306 0.0124 (37/2978) 0 * * Os_TE_602414 Chr12 10755238 10754299 + COPIA2-LTR_OS 6433 0.2318 (689/2973) 1 Solo_LTR * Os_TE_602406 Chr12 10752825 10746406 + COPIA2-LTR_OS 6433 0.2271 (674/2968) 1 Intact Os_TE_602389 Os_TE_602389 Chr12 10746406 10752825 - COPIA2-LTR_OS 6433 0.2340 (700/2992) 1 Intact Os_TE_602406 Os_TE_602388 Chr12 10746379 10746380 + RETRO2_LTR 12874 0.0020 (6/2980) 0 * Os_TE_602387 Os_TE_602387 Chr12 10746375 10746374 - RETRO2_LTR 12874 0.0023 (6/2613) 0 * Os_TE_602388 Os_TE_602382 Chr12 10744789 10744790 + TYPEH 309 0.7660 (2196/2867) 0 * * Os_TE_602367 Chr12 10743406 10743407 + COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_602366 Os_TE_602366 Chr12 10743402 10743401 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_602367 Os_TE_602361 Chr12 10740535 10740536 - TRUNCATOR 2918 0.0030 (8/2625) 0 * * Os_TE_602360 Chr12 10740403 10740404 - ORSgTETN00200001 10994 0.0198 (52/2621) 0 * * Os_TE_602357 Chr12 10740145 10739796 + SINE03_OS 360 0.8285 (2044/2467) 1 Intact * Os_TE_602345 Chr12 10734842 10734843 - SZ-48LTR 3632 0.3438 (897/2609) 0 * * Os_TE_602338 Chr12 10731166 10731167 + GYPSY-B_LTR 7068 0.1410 (408/2893) 0 * * Os_TE_602337 Chr12 10731093 10730737 + ORSgTEMT04800097 377 0.4604 (1301/2826) 1 Intact Os_TE_602335 Os_TE_602335 Chr12 10730737 10731092 - ORSgTEMT04800063 360 0.5078 (1337/2633) 1 Intact Os_TE_602337 Os_TE_602311 Chr12 10726018 10726017 + ORSiOTOT00000037 220 0.5804 (1711/2948) 0 * * Os_TE_602307 Chr12 10723389 10723390 + ORSgTERTOOT00009 12852 0.0017 (5/2960) 0 * * Os_TE_602301 Chr12 10721963 10718401 - ORSiTETNOOT00200 3563 0.1709 (475/2780) 1 Intact Os_TE_602299 Os_TE_602299 Chr12 10718401 10721962 + TWIFBIG 3567 0.1998 (574/2873) 1 Intact Os_TE_602301 Os_TE_602286 Chr12 10709683 10709684 - MUDRN3_OS 903 0.3153 (940/2981) 0 * Os_TE_602285 Os_TE_602285 Chr12 10709675 10709674 - MUDRN3_OS 903 0.3222 (963/2989) 0 * Os_TE_602286 Os_TE_602281 Chr12 10708259 10708258 - TRUNCATOR 2918 0.0017 (5/2982) 0 * * Os_TE_602275 Chr12 10706283 10706284 + RIRE3_LTR 12054 0.0021 (6/2813) 0 * Os_TE_602274 Os_TE_602274 Chr12 10706279 10706278 - RIRE3_LTR 12054 0.0021 (6/2817) 0 * Os_TE_602275 Os_TE_602271 Chr12 10705627 10705628 + GYPSY-A_LTR 8951 0.2081 (620/2980) 0 * Os_TE_602270 Os_TE_602270 Chr12 10705623 10705622 - GYPSY-A_LTR 8951 0.2130 (637/2990) 0 * Os_TE_602271 Os_TE_602130 Chr12 10670247 10670248 - MUDRN1_OS 764 0.0056 (4/708) 0 * * Os_TE_602129 Chr12 10669468 10669469 + MPING 430 0.0051 (11/2170) 0 * Os_TE_602128 Os_TE_602128 Chr12 10669466 10669465 - MPING 430 0.0037 (11/2974) 0 * Os_TE_602129 Os_TE_602127 Chr12 10669210 10668875 - NDNA1TNA_OS 334 0.2393 (674/2816) 1 Intact Os_TE_602121 Os_TE_602121 Chr12 10668871 10669210 + NDNA1TNA_OS 334 0.2250 (671/2982) 1 Intact Os_TE_602127 Os_TE_602068 Chr12 10655620 10655621 - OSTE15 1168 0.0007 (2/2937) 0 * * Os_TE_602029 Chr12 10637502 10637503 + ORSiTERTOOT00226 792 0.0003 (1/2969) 0 * Os_TE_602028 Os_TE_602028 Chr12 10637498 10637497 + ORSiTERTOOT00226 792 0.0003 (1/2970) 0 * Os_TE_602029 Os_TE_602017 Chr12 10633199 10633200 - SZ-50_LTR 11691 0.0070 (21/2990) 0 * Os_TE_602016 Os_TE_602016 Chr12 10633195 10633194 + SZ-50_LTR 11691 0.0044 (13/2984) 0 * Os_TE_602017 Os_TE_601988 Chr12 10623829 10623830 - STOLAB 312 0.0067 (20/2979) 0 * * Os_TE_601965 Chr12 10612414 10612415 + INDITTO 263 0.1364 (405/2970) 0 * Os_TE_601964 Os_TE_601964 Chr12 10612412 10612411 - INDITTO 263 0.1350 (403/2986) 0 * Os_TE_601965 Os_TE_601963 Chr12 10612405 10612404 - STOWAWAY11_OS 292 0.0076 (20/2616) 0 * Os_TE_601962 Os_TE_601962 Chr12 10612401 10612402 + STOWAWAY13_OS 251 0.0070 (21/2988) 0 * Os_TE_601963 Os_TE_601958 Chr12 10609809 10609808 - RIRE3A_LTR 10580 0.0010 (3/2923) 0 * * Os_TE_601951 Chr12 10607030 10607031 - ORSgTETNOOT01607 258 0.0070 (21/2992) 0 * * Os_TE_601950 Chr12 10606515 10606514 + STOWAWAY51_OS 246 0.0003 (1/2988) 0 * * Os_TE_601947 Chr12 10605967 10605968 + DS-RICE4N 715 0.0162 (48/2963) 0 * * Os_TE_601912 Chr12 10588590 10588591 + ORSiTERTOOT00028 8600 0.0588 (174/2958) 0 * * Os_TE_601840 Chr12 10558013 10558014 - ORSiTERT00200154 9386 0.1316 (387/2941) 0 * Os_TE_601839 Os_TE_601839 Chr12 10558007 10558006 + TRUNCATOR 2918 0.1365 (403/2953) 0 * Os_TE_601840 Os_TE_601838 Chr12 10557640 10545789 + ORSiTERTOOT00027 10853 0.2123 (625/2944) 1 Intact Os_TE_601825 Os_TE_601825 Chr12 10545789 10557640 - RIRE3A_LTR 10580 0.2208 (653/2958) 1 Intact Os_TE_601838 Os_TE_601821 Chr12 10544451 10544452 + TRUNCATOR 2918 0.0014 (4/2946) 0 * Os_TE_601820 Os_TE_601820 Chr12 10544445 10544444 - ORSiTERT00200154 9386 0.0014 (4/2942) 0 * Os_TE_601821 Os_TE_601819 Chr12 10544375 10544374 + TRUNCATOR 2918 0.3815 (1124/2946) 0 * * Os_TE_601814 Chr12 10542398 10542399 - ORSgTERT00201216 11284 0.2212 (620/2803) 0 * Os_TE_601813 Os_TE_601813 Chr12 10542394 10542393 - RIRE2_LTR 11306 0.2229 (626/2808) 0 * Os_TE_601814 Os_TE_601796 Chr12 10532414 10532415 - RIREX_LTR 8828 0.3340 (941/2817) 0 * Os_TE_601795 Os_TE_601795 Chr12 10532410 10532409 + RIREX_LTR 8828 0.3371 (951/2821) 0 * Os_TE_601796 Os_TE_601793 Chr12 10531426 10531425 - TRUNCATOR 2918 0.0867 (243/2802) 0 * * Os_TE_601788 Chr12 10530705 10530706 + RIREX_LTR 8828 0.0011 (3/2820) 0 * Os_TE_601787 Os_TE_601787 Chr12 10530701 10530700 - RIREX_LTR 8828 0.0007 (2/2818) 0 * Os_TE_601788 Os_TE_601786 Chr12 10530385 10530386 + ORSgTEMT01602609 233 0.0071 (20/2818) 0 * * Os_TE_601781 Chr12 10529508 10529509 - RIRE2_LTR 11306 0.0132 (37/2812) 0 * Os_TE_601780 Os_TE_601780 Chr12 10529504 10529503 + RIRE2_LTR 11306 0.0132 (37/2811) 0 * Os_TE_601781 Os_TE_601771 Chr12 10528196 10528197 - MERMITE-17 2759 0.0071 (20/2807) 0 * * Os_TE_601764 Chr12 10527465 10527230 + ORSgTEMT01602181 239 0.2206 (614/2783) 1 Intact Os_TE_601763 Os_TE_601763 Chr12 10527230 10527465 - ORSgTEMT01601432 239 0.2216 (623/2812) 1 Intact Os_TE_601764 Os_TE_601762 Chr12 10526745 10526744 + CACTA-M 1129 0.0167 (47/2816) 0 * Os_TE_601761 Os_TE_601761 Chr12 10526743 10526744 - CACTA-M 1129 0.0164 (46/2799) 0 * Os_TE_601762 Os_TE_601759 Chr12 10526582 10526583 - ORSgTETN00200001 10994 0.0064 (18/2817) 0 * Os_TE_601758 Os_TE_601758 Chr12 10526580 10526579 + SPMLIKE 10989 0.0082 (23/2808) 0 * Os_TE_601759 Os_TE_601754 Chr12 10524955 10524956 - RIRE2_LTR 11306 0.0036 (10/2781) 0 * Os_TE_601753 Os_TE_601753 Chr12 10524951 10524950 + RIRE2_LTR 11306 0.0036 (10/2774) 0 * Os_TE_601754 Os_TE_601722 Chr12 10514610 10514611 + SC-8_LTR 4951 0.0278 (83/2985) 0 * Os_TE_601721 Os_TE_601721 Chr12 10514606 10514605 - SC-8_LTR 4951 0.0275 (82/2983) 0 * Os_TE_601722 Os_TE_601711 Chr12 10510299 10510300 + ORSiTERTOOT00226 792 0.0017 (5/2995) 0 * Os_TE_601710 Os_TE_601710 Chr12 10510295 10510294 - SZ-22_LTR 4403 0.0017 (5/2993) 0 * Os_TE_601711 Os_TE_601707 Chr12 10508575 10508576 - ORSgTERT00201357 5378 0.0003 (1/2981) 0 * * Os_TE_601648 Chr12 10486209 10486210 + ENSPM4_OS 11610 0.0074 (22/2984) 0 * * Os_TE_601646 Chr12 10485916 10485673 - TESS 244 0.2173 (642/2954) 1 Intact Os_TE_601645 Os_TE_601645 Chr12 10485673 10485916 + TESS 244 0.2165 (640/2956) 1 Intact Os_TE_601646 Os_TE_601630 Chr12 10482344 10482345 + RIRE1_LTR 8322 0.0067 (20/2987) 0 * * Os_TE_601615 Chr12 10479294 10479295 - NDNA1TNA_OS 334 0.0162 (47/2901) 0 * * Os_TE_601610 Chr12 10475141 10475140 - GAIJIN 147 0.2035 (608/2988) 0 * Os_TE_601609 Os_TE_601609 Chr12 10475140 10475141 + ORSgTEMT00502025 149 0.2025 (604/2983) 0 * Os_TE_601610 Os_TE_601592 Chr12 10466243 10466573 - ORSgTEMT00101493 344 0.8214 (2405/2928) 1 Intact * Os_TE_601589 Chr12 10462185 10462184 + OSTE1 801 0.1943 (575/2959) 0 * * Os_TE_601587 Chr12 10460015 10460016 + ORSiTERTOOT00296 5553 0.0003 (1/2996) 0 * * Os_TE_601579 Chr12 10457919 10457918 + ORSiTERTOOT00296 5553 0.0007 (2/2984) 0 * * Os_TE_601575 Chr12 10456713 10456714 + ORSiTERTOOT00296 5553 0.0003 (1/2990) 0 * Os_TE_601574 Os_TE_601574 Chr12 10456709 10456708 - SC-3_LTR 5748 0.0003 (1/2992) 0 * Os_TE_601575 Os_TE_601567 Chr12 10448893 10448894 - RIREX_LTR 8828 0.0007 (2/2953) 0 * * Os_TE_601563 Chr12 10448027 10447688 + ORSgTEMT00100949 340 0.8091 (2339/2891) 1 Intact * Os_TE_601534 Chr12 10439963 10439964 - SC-3_LTR 5748 0.0003 (1/2979) 0 * Os_TE_601533 Os_TE_601533 Chr12 10439959 10439958 + ORSiTERTOOT00296 5553 0.0003 (1/2979) 0 * Os_TE_601534 Os_TE_601527 Chr12 10435934 10435935 - TYPEM 227 0.0164 (49/2995) 0 * Os_TE_601526 Os_TE_601526 Chr12 10435933 10435932 - ORSgTEMT02400179 221 0.0160 (48/2996) 0 * Os_TE_601527 Os_TE_601525 Chr12 10435779 10435780 - CLOUD-6 508 0.5827 (1708/2931) 0 * Os_TE_601524 Os_TE_601524 Chr12 10435771 10435770 - CLOUD-6 508 0.5944 (1772/2981) 0 * Os_TE_601525 Os_TE_601491 Chr12 10427952 10427807 + ORSgTEMT01701016 130 0.8319 (2371/2850) 1 Intact Os_TE_601488 Os_TE_601488 Chr12 10427807 10427952 - ORSgTEMT01700299 212 0.7436 (1488/2001) 1 Intact Os_TE_601491 Os_TE_601485 Chr12 10426893 10426894 - RIRE2_LTR 11306 0.0007 (2/2674) 0 * Os_TE_601484 Os_TE_601484 Chr12 10426889 10426888 + RIRE2_LTR 11306 0.0007 (2/2833) 0 * Os_TE_601485 Os_TE_601483 Chr12 10426777 10426778 + SETARIA1 1293 0.7885 (2240/2841) 0 * * Os_TE_601473 Chr12 10419966 10419965 - TYPEM 227 0.0007 (2/2973) 0 * * Os_TE_601471 Chr12 10419868 10419869 - F118 179 0.0007 (2/2983) 0 * Os_TE_601470 Os_TE_601470 Chr12 10419861 10419860 + F118 179 0.0007 (2/2983) 0 * Os_TE_601471 Os_TE_601467 Chr12 10419452 10419453 + OsSN3 183 0.0047 (14/2971) 0 * * Os_TE_601403 Chr12 10395892 10395893 + COPI2_LTR 4733 0.0003 (1/2997) 0 * Os_TE_601402 Os_TE_601402 Chr12 10395888 10395887 - COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_601403 Os_TE_601383 Chr12 10386635 10365161 + RIRE2_LTR 11306 0.2158 (641/2970) 1 Intact Os_TE_601368 Os_TE_601368 Chr12 10365161 10386635 - RIRE2_LTR 11306 0.2206 (657/2978) 1 Intact Os_TE_601383 Os_TE_601366 Chr12 10364635 10352956 + SPMLIKE 10989 0.6152 (1837/2986) 1 Intact Os_TE_601351 Os_TE_601351 Chr12 10352956 10364635 - SPMLIKE 10989 0.2803 (460/1641) -1 Intact Os_TE_601366 Os_TE_601350 Chr12 10352856 10352857 - OSTE33 1012 0.3023 (211/698) -1 * Os_TE_601349 Os_TE_601349 Chr12 10352847 10352846 - OSTE33 1012 0.7139 (1183/1657) -1 * Os_TE_601350 Os_TE_601348 Chr12 10352828 10352829 - RIREX_LTR 8828 0.0014 (1/690) -1 * Os_TE_601347 Os_TE_601347 Chr12 10352824 10352823 + RIREX_LTR 8828 0.0019 (1/514) -1 * Os_TE_601348 Os_TE_601343 Chr12 10347620 10371903 - SZ-7A_LTR 11400 0.6206 (1842/2968) 1 Intact * Os_TE_601333 Chr12 10345063 10345064 + RPO_OS 1983 0.0005 (1/1878) 0 * * Os_TE_601315 Chr12 10339948 10339949 - RIRE3A_LTR 10580 0.1269 (379/2986) 0 * Os_TE_601314 Os_TE_601314 Chr12 10339944 10339943 + ORSiTERTOOT00027 10853 0.1210 (359/2967) 0 * Os_TE_601315 Os_TE_601312 Chr12 10339615 10339614 + TRUNCATOR 2918 0.1793 (536/2989) 0 * Os_TE_601311 Os_TE_601311 Chr12 10339614 10339615 - TRUNCATOR 2918 0.1726 (513/2973) 0 * Os_TE_601312 Os_TE_601310 Chr12 10338963 10338964 - SZ-37_LTR 12001 0.4003 (1195/2985) 0 * Os_TE_601309 Os_TE_601309 Chr12 10338959 10338958 + SZ-37_LTR 12001 0.3980 (1188/2985) 0 * Os_TE_601310 Os_TE_601308 Chr12 10338888 10338889 - RETROSAT2LTR 12796 0.0031 (9/2880) 0 * * Os_TE_601307 Chr12 10338846 10338847 - SZ-28LTR 262 0.4037 (1210/2997) 0 * Os_TE_601306 Os_TE_601306 Chr12 10338842 10338841 + SZ-28LTR 262 0.3970 (1183/2980) 0 * Os_TE_601307 Os_TE_601302 Chr12 10337271 10324970 + RETROSAT2LTR 12796 0.6053 (1799/2972) 1 Intact Os_TE_601282 Os_TE_601282 Chr12 10324968 10337271 - RETROSAT2LTR 12796 0.6143 (1841/2997) 1 Intact Os_TE_601302 Os_TE_601279 Chr12 10324478 10324479 + SPMLIKE 10989 0.3036 (906/2984) 0 * Os_TE_601278 Os_TE_601278 Chr12 10324476 10324475 - SPMLIKE 10989 0.3069 (918/2991) 0 * Os_TE_601279 Os_TE_601276 Chr12 10323515 10323516 + ORSgTEMT03000039 377 0.3903 (1131/2898) 0 * Os_TE_601275 Os_TE_601275 Chr12 10323510 10323509 - ORSgTEMT03000007 372 0.4015 (1180/2939) 0 * Os_TE_601276 Os_TE_601272 Chr12 10321288 10321289 - RIREX_LTR 8828 0.0003 (1/2990) 0 * Os_TE_601271 Os_TE_601271 Chr12 10321284 10321283 + RIREX_LTR 8828 0.0003 (1/2982) 0 * Os_TE_601272 Os_TE_601269 Chr12 10320507 10320506 + ORSiTERTOOT00291 11421 0.0019 (2/1057) 0 * * Os_TE_601264 Chr12 10320155 10320154 + ORSgTEMT00901844 250 0.3960 (1131/2856) 0 * * Os_TE_601252 Chr12 10318719 10315284 - TRUNCATOR2_LTR 2904 0.2323 (639/2751) 1 Intact Os_TE_601249 Os_TE_601249 Chr12 10315284 10318719 + ORSiCMCM00100019 2717 0.2198 (650/2957) 1 Intact Os_TE_601252 Os_TE_601246 Chr12 10314095 10314094 + ORSiTERTOOT00357 4690 0.4001 (1198/2994) 0 * * Os_TE_601238 Chr12 10313060 10313061 + ORSgTETNOOT00908 242 0.1261 (368/2918) 0 * * Os_TE_601231 Chr12 10311155 10311156 + TNR8-1 418 0.3958 (1183/2989) 0 * Os_TE_601230 Os_TE_601230 Chr12 10311152 10311151 - ORSgTEMT01800105 452 0.3938 (1176/2986) 0 * Os_TE_601231 Os_TE_601229 Chr12 10310939 10310940 - COPIA2-LTR_OS 6433 0.0881 (264/2996) 0 * Os_TE_601228 Os_TE_601228 Chr12 10310935 10310934 + COPIA2-LTR_OS 6433 0.0855 (256/2994) 0 * Os_TE_601229 Os_TE_601209 Chr12 10303750 10303751 + SPMLIKE 10989 0.0027 (8/2961) 0 * Os_TE_601208 Os_TE_601208 Chr12 10303748 10303747 - ORSgTETN00200001 10994 0.0027 (8/2969) 0 * Os_TE_601209 Os_TE_601151 Chr12 10289512 10289513 - TREP215 239 0.0021 (6/2924) 0 * * Os_TE_601143 Chr12 10287811 10287812 + RIREX_LTR 8828 0.0134 (40/2978) 0 * Os_TE_601142 Os_TE_601142 Chr12 10287807 10287806 - RIREX_LTR 8828 0.0121 (36/2977) 0 * Os_TE_601143 Os_TE_601141 Chr12 10287372 10287373 + RETRO2A_LTR 12895 0.0007 (2/2958) 0 * Os_TE_601140 Os_TE_601140 Chr12 10287371 10287370 - RETRO1_LTR 8314 0.0007 (2/2978) 0 * Os_TE_601141 Os_TE_601139 Chr12 10287046 10287047 + SZLTR 1249 0.0007 (2/2920) 0 * Os_TE_601138 Os_TE_601138 Chr12 10287042 10287041 - RETRO2_LTR 12874 0.0007 (2/2928) 0 * Os_TE_601139 Os_TE_601137 Chr12 10286762 10286763 - ORSgTEMT00501158 153 0.0066 (19/2889) 0 * * Os_TE_601123 Chr12 10280034 10280035 - MUDRN1_OS 764 0.0050 (15/2973) 0 * Os_TE_601122 Os_TE_601122 Chr12 10280026 10280025 + MUDRN1_OS 764 0.0054 (16/2973) 0 * Os_TE_601123 Os_TE_601121 Chr12 10278789 10278790 - MDR2 6967 0.0010 (3/2993) 0 * Os_TE_601120 Os_TE_601120 Chr12 10278781 10278780 + MDR2 6967 0.0010 (3/2991) 0 * Os_TE_601121 Os_TE_601119 Chr12 10278700 10278699 - ORSgTEMT01601493 303 0.0080 (24/2989) 0 * Os_TE_601118 Os_TE_601118 Chr12 10278693 10278694 - ORSgTEMT01602404 253 0.0060 (18/2979) 0 * Os_TE_601119 Os_TE_601115 Chr12 10277956 10277957 + TREP219 104 0.0131 (39/2975) 0 * * Os_TE_601113 Chr12 10277561 10277560 - OSTE14 885 0.3109 (910/2927) 0 * * Os_TE_601079 Chr12 10269947 10269946 - NDNA1TNA_OS 334 0.0007 (2/2992) 0 * * Os_TE_601076 Chr12 10266419 10266420 - ENSPM3_OS 10837 0.0081 (24/2981) 0 * * Os_TE_601067 Chr12 10264372 10264371 - ORSgTEMT01600515 235 0.0057 (17/2993) 0 * Os_TE_601066 Os_TE_601066 Chr12 10264369 10264370 - ORSgTEMT01601208 238 0.0050 (15/2989) 0 * Os_TE_601067 Os_TE_601043 Chr12 10258547 10258548 - TRUNCATOR2_LTR 2904 0.0763 (172/2253) 0 * * Os_TE_601029 Chr12 10252194 10252195 - OSTE33 1012 0.2806 (758/2701) 0 * * Os_TE_601019 Chr12 10251284 10251285 - RIREX_LTR 8828 0.0020 (6/2961) 0 * * Os_TE_601010 Chr12 10247860 10247859 - TRUNCATOR2_LTR 2904 0.0083 (21/2535) 0 * * Os_TE_601004 Chr12 10245796 10245797 + TRSA_OS 353 0.0004 (1/2740) 0 * * Os_TE_601002 Chr12 10245672 10245671 + Cassandra_OS-LTR 764 0.0011 (3/2735) 0 * * Os_TE_600999 Chr12 10242717 10242718 + RIREX_LTR 8828 0.0059 (16/2722) 0 * Os_TE_600998 Os_TE_600998 Chr12 10242713 10242712 - RIREX_LTR 8828 0.0055 (15/2728) 0 * Os_TE_600999 Os_TE_600997 Chr12 10242346 10242347 - RIREX_LTR 8828 0.0004 (1/2713) 0 * * Os_TE_600995 Chr12 10242328 10242329 - RIREX_LTR 8828 0.0082 (22/2698) 0 * Os_TE_600994 Os_TE_600994 Chr12 10242324 10242323 + RIREX_LTR 8828 0.0085 (23/2692) 0 * Os_TE_600995 Os_TE_600937 Chr12 10230048 10230047 - RETROSAT2LTR 12796 0.0011 (3/2670) 0 * * Os_TE_600932 Chr12 10228816 10228815 - ORSgTEMT01600244 239 0.0879 (262/2980) 0 * * Os_TE_600930 Chr12 10228503 10228502 + TRUNCATOR 2918 0.2951 (789/2674) 0 * * Os_TE_600915 Chr12 10224760 10224761 - ORSgTERT00201216 11284 0.0007 (2/2990) 0 * * Os_TE_600912 Chr12 10224107 10224108 + SPMLIKE 10989 0.3005 (857/2852) 0 * Os_TE_600911 Os_TE_600911 Chr12 10224105 10224104 - ORSgTETN00200001 10994 0.3157 (915/2898) 0 * Os_TE_600912 Os_TE_600893 Chr12 10220962 10220963 + RIRE7_LTR 7615 0.0020 (6/2975) 0 * Os_TE_600892 Os_TE_600892 Chr12 10220958 10220957 - RIRE7_LTR 7615 0.0024 (7/2974) 0 * Os_TE_600893 Os_TE_600875 Chr12 10217909 10217910 - RETRO2_LTR 12874 0.0010 (3/2974) 0 * * Os_TE_600873 Chr12 10217705 10217704 + TRUNCATOR 2918 0.1656 (494/2983) 0 * * Os_TE_600869 Chr12 10217147 10217146 + F569 228 0.7819 (1871/2393) 0.89 * * Os_TE_600855 Chr12 10213369 10213368 - SETARIA1 1293 0.0007 (2/2779) 0 * * Os_TE_600852 Chr12 10211478 10211479 + SPMLIKE 10989 0.0010 (3/2884) 0 * Os_TE_600851 Os_TE_600851 Chr12 10211476 10211475 - ORSgTETN00200001 10994 0.0007 (2/2897) 0 * Os_TE_600852 Os_TE_600832 Chr12 10203871 10203872 - SZ-43LTR 4039 0.0044 (13/2955) 0 * * Os_TE_600813 Chr12 10200161 10200160 + RIREX_LTR 8828 0.0050 (15/2983) 0 * * Os_TE_600776 Chr12 10186398 10186399 + TRUNCATOR2_LTR 2904 0.0020 (6/2984) 0 * * Os_TE_600743 Chr12 10169037 10169036 - ORSiTERT00200154 9386 0.0562 (160/2849) 0 * * Os_TE_600692 Chr12 10145696 10145695 + F569 228 0.0010 (3/2973) 0 * * Os_TE_600676 Chr12 10139594 10139595 + TWIF 586 0.0067 (17/2537) 0 * Os_TE_600675 Os_TE_600675 Chr12 10139587 10139586 - ORSiTETNOOT00200 3563 0.0110 (29/2641) 0 * Os_TE_600676 Os_TE_600670 Chr12 10131910 10131909 - COPIA2-LTR_OS 6433 0.0008 (2/2652) 0 * * Os_TE_600607 Chr12 10086330 10086331 + RIREX_LTR 8828 0.0166 (49/2959) 0 * * Os_TE_600604 Chr12 10084360 10084273 - OSTE18 129 0.2430 (725/2984) 1 Intact * Os_TE_600601 Chr12 10083789 10083790 + KRISPIE 956 0.0044 (13/2967) 0 * Os_TE_600600 Os_TE_600600 Chr12 10083784 10083783 - ORSiTEMT01300001 950 0.0044 (13/2964) 0 * Os_TE_600601 Os_TE_600592 Chr12 10082156 10082155 + ENSPM4_OS 11610 0.0064 (14/2204) 0 * * Os_TE_600591 Chr12 10080196 10080197 + SEVERIN-2 1952 0.0010 (3/2884) 0 * * Os_TE_600588 Chr12 10077530 10077529 - TYPEH 309 0.0044 (13/2978) 0 * Os_TE_600587 Os_TE_600587 Chr12 10077529 10077530 + ORSgTEMT01900027 302 0.0037 (11/2968) 0 * Os_TE_600588 Os_TE_600577 Chr12 10076833 10076680 + ORSgTEMT01702111 154 0.2466 (733/2973) 1 Intact * Os_TE_600574 Chr12 10075830 10075831 + RIRE1_LTR 8322 0.7673 (2285/2978) 0 * * Os_TE_600560 Chr12 10071617 10071616 - ORSgTEMT01601432 239 0.0114 (34/2972) 0 * Os_TE_600559 Os_TE_600559 Chr12 10071610 10071611 - ORSgTEMT01600201 236 0.0111 (33/2965) 0 * Os_TE_600560 Os_TE_600536 Chr12 10066250 10066251 + CACTA-H 1152 0.0007 (2/2966) 0 * Os_TE_600535 Os_TE_600535 Chr12 10066248 10066247 - ORSgTETN00200001 10994 0.0007 (2/2978) 0 * Os_TE_600536 Os_TE_600517 Chr12 10060807 10060808 + SZ-54_LTR 5203 0.0069 (16/2332) 0 * * Os_TE_600512 Chr12 10058162 10058163 - CLOUD 734 0.0044 (13/2956) 0 * * Os_TE_600503 Chr12 10055591 10055590 - TYPEG 427 0.0223 (62/2786) 0 * * Os_TE_600498 Chr12 10048697 10048696 - STOWAWAY44_OS 240 0.0045 (13/2898) 0 * Os_TE_600497 Os_TE_600497 Chr12 10048694 10048695 - STOWAWAY51_OS 246 0.0041 (12/2905) 0 * Os_TE_600498 Os_TE_600484 Chr12 10047717 10047716 - STOWAWAY8_OS 259 0.0057 (16/2822) 0 * * Os_TE_600473 Chr12 10045301 10045302 - SZ-5LTR 1223 0.0021 (6/2844) 0 * Os_TE_600472 Os_TE_600472 Chr12 10045297 10045296 + COPIA1-LTR_OS 9292 0.0017 (5/2863) 0 * Os_TE_600473 Os_TE_600471 Chr12 10045007 10045008 + ORSiTERTOOT00027 10853 0.1142 (326/2855) 0 * Os_TE_600470 Os_TE_600470 Chr12 10045003 10045002 - RIRE3A_LTR 10580 0.1248 (358/2868) 0 * Os_TE_600471 Os_TE_600440 Chr12 10022364 10022365 + ORSgTEMT00500385 153 0.0088 (20/2268) 0 * * Os_TE_600438 Chr12 10022259 10022260 - MDR2 6967 0.0018 (4/2240) 0 * * Os_TE_600437 Chr12 10022254 10022253 + STOWAWAY1_OS 149 0.0022 (5/2315) 0 * * Os_TE_600436 Chr12 10022176 10022177 - ORSgTEMT00100865 348 0.0308 (71/2302) 0 * * Os_TE_600427 Chr12 10020581 10020582 - SC-3_LTR 5748 0.0026 (6/2308) 0 * * Os_TE_600424 Chr12 10018272 10018273 + SEVERIN-2 1952 0.0147 (34/2313) 0 * * Os_TE_600421 Chr12 10016350 10016351 + ORSiTERTOOT00226 792 0.0119 (27/2264) 0 * Os_TE_600420 Os_TE_600420 Chr12 10016346 10016345 - SZ-22_LTR 4403 0.0115 (26/2269) 0 * Os_TE_600421 Os_TE_600419 Chr12 10014679 10014680 + ORSiTERTOOT00296 5553 0.0009 (2/2302) 0 * * Os_TE_600374 Chr12 9996111 9996112 + TESS 244 0.2634 (773/2935) 0 * Os_TE_600373 Os_TE_600373 Chr12 9996104 9996103 - TESS 244 0.2632 (770/2925) 0 * Os_TE_600374 Os_TE_600372 Chr12 9995310 9995311 + TRUNCATOR2_LTR 2904 0.0071 (21/2948) 0 * Os_TE_600371 Os_TE_600371 Chr12 9995306 9995305 - TRUNCATOR2_LTR 2904 0.0075 (22/2948) 0 * Os_TE_600372 Os_TE_600369 Chr12 9994807 9994808 + ORSgTEMT01601122 212 0.1384 (407/2941) 0 * * Os_TE_600368 Chr12 9994685 9988287 + COPIA1-LTR_OS 9292 0.8522 (2508/2943) 1 Intact * Os_TE_600331 Chr12 9968713 9965063 + ORSgTEMT01601993 233 0.8205 (1106/1348) 1 Intact Os_TE_600326 Os_TE_600326 Chr12 9965058 9968713 + ORSgTEMT01600222 242 0.8245 (1099/1333) 1 Intact Os_TE_600331 Os_TE_600298 Chr12 9951535 9951106 + MPING 430 0.0819 (93/1135) 1 Intact Os_TE_600297 Os_TE_600297 Chr12 9951106 9951535 - MPING 430 0.0779 (96/1233) 1 Intact Os_TE_600298 Os_TE_600268 Chr12 9931728 9931727 + STOWAWAY13_OS 251 0.0727 (217/2983) 0 * * Os_TE_600267 Chr12 9931721 9931722 - STOWAWAY13_OS 251 0.0717 (214/2983) 0 * Os_TE_600266 Os_TE_600266 Chr12 9931720 9931719 + STOWAWAY13_OS 251 0.0725 (216/2981) 0 * Os_TE_600267 Os_TE_600260 Chr12 9930286 9930287 - CACTA-J 1159 0.0716 (212/2960) 0 * * Os_TE_600258 Chr12 9930215 9930216 + ORSgTETNOOT00908 242 0.0007 (2/2943) 0 * * Os_TE_600257 Chr12 9929989 9929988 - ORSgTEMT01700915 154 0.0116 (34/2928) 0 * Os_TE_600256 Os_TE_600256 Chr12 9929981 9929982 + ORSgTEMT01701743 163 0.0116 (34/2925) 0 * Os_TE_600257 Os_TE_600255 Chr12 9929770 9929771 - OSTE15 1168 0.0014 (4/2869) 0 * * Os_TE_600239 Chr12 9924777 9924778 + ORSgTETNOOT00072 203 0.0718 (210/2926) 0 * Os_TE_600238 Os_TE_600238 Chr12 9924773 9924772 + TESS 244 0.0712 (210/2951) 0 * Os_TE_600239 Os_TE_600228 Chr12 9920769 9917506 - TRUNCATOR2_LTR 2904 0.2287 (683/2986) 1 Intact Os_TE_600207 Os_TE_600207 Chr12 9917506 9920769 + TRUNCATOR2_LTR 2904 0.2269 (669/2949) 1 Intact Os_TE_600228 Os_TE_600203 Chr12 9912617 9912618 - SC-3_LTR 5748 0.0003 (1/2981) 0 * Os_TE_600202 Os_TE_600202 Chr12 9912613 9912612 + ORSiTERTOOT00296 5553 0.0003 (1/2974) 0 * Os_TE_600203 Os_TE_600189 Chr12 9906692 9906693 - STOWAWAY14_OS 258 0.0004 (1/2840) 0 * * Os_TE_600183 Chr12 9906025 9906026 - MuDR2_OS 6770 0.0054 (16/2980) 0 * Os_TE_600182 Os_TE_600182 Chr12 9906016 9906015 + MuDR2_OS 6770 0.0050 (15/2978) 0 * Os_TE_600183 Os_TE_600181 Chr12 9905725 9905726 - COPIA2-LTR_OS 6433 0.0017 (5/2993) 0 * * Os_TE_600160 Chr12 9895654 9895655 - SPMLIKE 10989 0.0037 (11/2936) 0 * * Os_TE_600119 Chr12 9876036 9876035 - ORSgTEMT00501356 145 0.0019 (5/2633) 0 * * Os_TE_600117 Chr12 9876014 9876015 + RIRE2_LTR 11306 0.0009 (2/2335) 0 * * Os_TE_600109 Chr12 9873330 9873331 - RIRE2_LTR 11306 0.0007 (2/2993) 0 * Os_TE_600108 Os_TE_600108 Chr12 9873326 9873325 + RIRE2_LTR 11306 0.0007 (2/2990) 0 * Os_TE_600109 Os_TE_600105 Chr12 9872764 9872763 - NDNA1TNA_OS 334 0.0007 (2/2987) 0 * * Os_TE_600103 Chr12 9872729 9872728 + COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * * Os_TE_600102 Chr12 9872554 9872555 - RIREX_LTR 8828 0.0021 (6/2888) 0 * Os_TE_600101 Os_TE_600101 Chr12 9872550 9872549 + RIREX_LTR 8828 0.0020 (6/2979) 0 * Os_TE_600102 Os_TE_600080 Chr12 9868386 9868145 - ORSgTETNOOT01982 231 0.2504 (731/2919) 1 Intact * Os_TE_600075 Chr12 9867727 9867726 - RETROSAT2LTRA 3112 0.0030 (9/2955) 0 * * Os_TE_600039 Chr12 9857412 9857411 - TRUNCATOR2_LTR 2904 0.0012 (3/2490) 0 * * Os_TE_600029 Chr12 9845581 9856885 - ORSgTERT00201216 11284 0.2563 (652/2544) 1 Intact * Os_TE_600026 Chr12 9844929 9844928 - ORSiTERT00200154 9386 0.0024 (7/2967) 0 * * Os_TE_600025 Chr12 9844709 9844710 + DS-RICE4N 715 0.0074 (22/2976) 0 * Os_TE_600024 Os_TE_600024 Chr12 9844697 9844696 + ORSiTETN00100011 676 0.0030 (9/2967) 0 * Os_TE_600025 Os_TE_599979 Chr12 9823803 9823804 + COPIA2-LTR_OS 6433 0.0159 (47/2955) 0 * Os_TE_599978 Os_TE_599978 Chr12 9823799 9823798 - COPIA2-LTR_OS 6433 0.0161 (48/2979) 0 * Os_TE_599979 Os_TE_599977 Chr12 9823742 9823743 - RIRE2_LTR 11306 0.0017 (5/2950) 0 * Os_TE_599976 Os_TE_599976 Chr12 9823738 9823737 + RIRE2_LTR 11306 0.0017 (5/2954) 0 * Os_TE_599977 Os_TE_599975 Chr12 9823409 9823410 + COPIA2-LTR_OS 6433 0.0343 (101/2941) 0 * * Os_TE_599972 Chr12 9823376 9823375 - COPIA2-LTR_OS 6433 0.0209 (61/2923) 0 * * Os_TE_599971 Chr12 9822729 9822730 - RIRE2_LTR 11306 0.0007 (2/2941) 0 * Os_TE_599970 Os_TE_599970 Chr12 9822725 9822724 + RIRE2_LTR 11306 0.0007 (2/2938) 0 * Os_TE_599971 Os_TE_599968 Chr12 9822248 9822247 - SEVERIN-2 1952 0.0310 (91/2935) 0 * * Os_TE_599967 Chr12 9822212 9822211 - NDNA1TNA_OS 334 0.0014 (4/2941) 0 * * Os_TE_599966 Chr12 9821803 9821802 + COPI2_LTR 4733 0.0003 (1/2968) 0 * * Os_TE_599965 Chr12 9821105 9821106 - ORSgTETN00200001 10994 0.0178 (51/2863) 0 * Os_TE_599964 Os_TE_599964 Chr12 9821103 9821102 + SPMLIKE 10989 0.0185 (53/2868) 0 * Os_TE_599965 Os_TE_599963 Chr12 9820946 9820947 + SPMLIKE 10989 0.0024 (7/2862) 0 * Os_TE_599962 Os_TE_599962 Chr12 9820944 9820943 - ORSgTETN00200001 10994 0.0021 (6/2863) 0 * Os_TE_599963 Os_TE_599960 Chr12 9819843 9819844 - SZ-9LTR 965 0.0192 (55/2868) 0 * Os_TE_599959 Os_TE_599959 Chr12 9819839 9819838 + SZ-9LTR 965 0.0182 (52/2860) 0 * Os_TE_599960 Os_TE_599953 Chr12 9815685 9815686 - RIREX_LTR 8828 0.0014 (4/2913) 0 * * Os_TE_599941 Chr12 9811005 9811006 + TRUNCATOR 2918 0.1936 (559/2887) 0 * * Os_TE_599935 Chr12 9807798 9807797 - SC-8_LTR 4951 0.0003 (1/2900) 0 * * Os_TE_599928 Chr12 9803827 9803826 + ORSiTETN00100018 738 0.0024 (7/2876) 0 * Os_TE_599927 Os_TE_599927 Chr12 9803826 9803827 + DS-RICE4N 715 0.0080 (23/2888) 0 * Os_TE_599928 Os_TE_599920 Chr12 9802904 9802903 + SEVERIN-2 1952 0.0054 (16/2936) 0 * * Os_TE_599895 Chr12 9793450 9793451 - RIRE3A_LTR 10580 0.1071 (307/2867) 0 * * Os_TE_599881 Chr12 9788492 9788493 - HARB-1_OS 5166 0.0003 (1/2892) 0 * * Os_TE_599879 Chr12 9788030 9788031 + ORSgTETNOOT00908 242 0.5363 (1552/2894) 0 * * Os_TE_599877 Chr12 9787842 9787841 + COPIA2-LTR_OS 6433 0.0007 (2/2854) 0 * * Os_TE_599870 Chr12 9786788 9786789 + RIREX_LTR 8828 0.0003 (1/2891) 0 * * Os_TE_599857 Chr12 9777620 9777619 + MDR2 6967 0.0016 (3/1875) 0 * * Os_TE_599841 Chr12 9768780 9768781 - SC-8_LTR 4951 0.0017 (5/2996) 0 * Os_TE_599840 Os_TE_599840 Chr12 9768776 9768775 + ORSiTERTOOT00381 4988 0.0017 (5/2996) 0 * Os_TE_599841 Os_TE_599839 Chr12 9765452 9765451 + TRUNCATOR 2918 0.0027 (8/2995) 0 * * Os_TE_599573 Chr12 9674276 9674275 - ORSgTEMT02400179 221 0.0027 (5/1882) 0 * * Os_TE_599565 Chr12 9673617 9673618 + TRUNCATOR 2918 0.0040 (7/1763) 0 * Os_TE_599564 Os_TE_599564 Chr12 9673611 9673610 - ORSiTERT00200154 9386 0.0038 (7/1832) 0 * Os_TE_599565 Os_TE_599554 Chr12 9661192 9661193 + RIRE2_LTR 11306 0.0082 (15/1825) 0 * * Os_TE_599497 Chr12 9642358 9642359 - RIRE2_LTR 11306 0.0818 (233/2850) 0 * Os_TE_599496 Os_TE_599496 Chr12 9642354 9642353 - ORSgTERT00201216 11284 0.0799 (226/2829) 0 * Os_TE_599497 Os_TE_599494 Chr12 9642220 9642219 - RETRO2_LTR 12874 0.6455 (1837/2846) 0 * * Os_TE_599483 Chr12 9640750 9628815 - TRUNCATOR 2918 0.2248 (658/2927) 1 Intact * Os_TE_599376 Chr12 9588057 9588058 - ORSgTETN00200001 10994 0.2537 (732/2885) 0 * * Os_TE_599369 Chr12 9587234 9587235 - TYPEM 227 0.0014 (4/2765) 0 * * Os_TE_599360 Chr12 9586385 9586384 + RIRE2_LTR 11306 0.0009 (2/2199) 0 * * Os_TE_599327 Chr12 9581951 9581952 + MPING 430 0.0003 (1/2994) 0 * Os_TE_599326 Os_TE_599326 Chr12 9581949 9581948 - MPING 430 0.0003 (1/2996) 0 * Os_TE_599327 Os_TE_599314 Chr12 9578447 9578446 - STOWAWAY44_OS 240 0.0003 (1/2966) 0 * Os_TE_599313 Os_TE_599313 Chr12 9578444 9578445 + STOWAWAY44_OS 240 0.0003 (1/2968) 0 * Os_TE_599314 Os_TE_599289 Chr12 9572655 9572654 - STOWAWAY36_OS 268 0.0015 (4/2661) 0 * * Os_TE_599284 Chr12 9571909 9571908 - ORSgTEMT01400023 211 0.0359 (106/2949) 0 * Os_TE_599283 Os_TE_599283 Chr12 9571905 9571906 + ORSgTEMT01400031 216 0.0444 (108/2431) 0 * Os_TE_599284 Os_TE_599282 Chr12 9571841 9571842 - RIRE3_LTR 12054 0.0198 (59/2982) 0 * Os_TE_599281 Os_TE_599281 Chr12 9571837 9571836 + RIRE3_LTR 12054 0.0182 (54/2963) 0 * Os_TE_599282 Os_TE_599267 Chr12 9567508 9567509 + NDNA2TNA_OS 346 0.0025 (7/2819) 0 * Os_TE_599266 Os_TE_599266 Chr12 9567506 9567505 - NDNA2TNA_OS 346 0.0014 (4/2900) 0 * Os_TE_599267 Os_TE_599216 Chr12 9555157 9555156 - ORSiTETNOOT00144 607 0.0007 (2/2955) 0 * * Os_TE_599215 Chr12 9554588 9554589 - RIRE2_LTR 11306 0.1904 (569/2988) 0 * Os_TE_599214 Os_TE_599214 Chr12 9554585 9554584 + RIRE2_LTR 11306 0.1875 (559/2981) 0 * Os_TE_599215 Os_TE_599211 Chr12 9553136 9553137 + OSTE33 1012 0.0010 (3/2978) 0 * Os_TE_599210 Os_TE_599210 Chr12 9553127 9553126 - OSTE33 1012 0.0023 (7/2983) 0 * Os_TE_599211 Os_TE_599207 Chr12 9551717 9551718 - ORSgTEMT00501447 126 0.0018 (4/2277) 0 * * Os_TE_599205 Chr12 9550161 9550162 + SINE9_OS 293 0.0388 (116/2988) 0 * Os_TE_599204 Os_TE_599204 Chr12 9550149 9550148 - SINE9_OS 293 0.0382 (114/2984) 0 * Os_TE_599205 Os_TE_599183 Chr12 9545711 9545710 + OSTE33 1012 0.0020 (6/2969) 0 * * Os_TE_599165 Chr12 9537533 9537532 + SEVERIN-2 1952 0.0007 (2/2996) 0 * * Os_TE_599160 Chr12 9533564 9533565 - SC-3_LTR 5748 0.0003 (1/2989) 0 * Os_TE_599159 Os_TE_599159 Chr12 9533560 9533559 + ORSiTERTOOT00296 5553 0.0003 (1/2990) 0 * Os_TE_599160 Os_TE_599158 Chr12 9532619 9532618 + ORSgTEMT01701547 160 0.0007 (2/2986) 0 * Os_TE_599157 Os_TE_599157 Chr12 9532612 9532613 - ORSgTEMT01600639 228 0.0007 (2/2982) 0 * Os_TE_599158 Os_TE_599153 Chr12 9531843 9531844 - ORSgTEMT01701182 145 0.0026 (7/2720) 0 * * Os_TE_599141 Chr12 9523550 9523551 - ORSgTEMT00501447 126 0.0007 (2/2969) 0 * Os_TE_599140 Os_TE_599140 Chr12 9523548 9523547 + ORSgTETNOOT00323 125 0.0007 (2/2977) 0 * Os_TE_599141 Os_TE_599139 Chr12 9523457 9523456 + ORSgTETNOOT00908 242 0.0024 (7/2976) 0 * * Os_TE_599138 Chr12 9523359 9523360 - RIRE2_LTR 11306 0.0077 (23/2974) 0 * * Os_TE_599136 Chr12 9523124 9523125 + RIREX_LTR 8828 0.1787 (514/2876) 0 * * Os_TE_599120 Chr12 9510171 9510170 - TRUNCATOR 2918 0.0063 (18/2876) 0 * Os_TE_599119 Os_TE_599119 Chr12 9510170 9510171 + TRUNCATOR 2918 0.0062 (18/2886) 0 * Os_TE_599120 Os_TE_599114 Chr12 9509138 9509139 + RIREX_LTR 8828 0.0004 (1/2806) 0 * Os_TE_599113 Os_TE_599113 Chr12 9509134 9509133 - RIREX_LTR 8828 0.0004 (1/2819) 0 * Os_TE_599114 Os_TE_599110 Chr12 9508280 9508279 - RIRE2_LTR 11306 0.0023 (7/2985) 0 * * Os_TE_599102 Chr12 9506647 9506885 + ORSgTEMT01602181 239 0.2380 (697/2928) 1 Intact * Os_TE_599097 Chr12 9504528 9504527 - RPO_OS 1983 0.0022 (6/2735) 0 * * Os_TE_599083 Chr12 9500464 9500463 + ORSgTEMT01601630 233 0.0115 (24/2093) -1 * * Os_TE_599082 Chr12 9500430 9500431 - ORSgTEMT02400246 177 0.1003 (245/2443) 0 * * Os_TE_599049 Chr12 9486667 9486666 - TRUNCATOR 2918 0.0004 (1/2711) 0 * Os_TE_599048 Os_TE_599048 Chr12 9486666 9486667 + TRUNCATOR 2918 0.0007 (2/2737) 0 * Os_TE_599049 Os_TE_599028 Chr12 9484169 9484170 - MuDR4_OS 7610 0.0043 (11/2553) 0 * * Os_TE_599027 Chr12 9484167 9484166 + TWIFB1 3737 0.0012 (3/2545) 0 * * Os_TE_599026 Chr12 9484161 9484160 - MuDR4_OS 7610 0.0047 (12/2558) 0 * * Os_TE_598997 Chr12 9477422 9477421 - SZ-35LTR 3853 0.0062 (16/2591) 0 * * Os_TE_598994 Chr12 9474368 9474369 - RETROSAT2LTR 12796 0.0080 (22/2733) 0 * Os_TE_598993 Os_TE_598993 Chr12 9474366 9474365 + RETROSAT2LTR 12796 0.0077 (21/2737) 0 * Os_TE_598994 Os_TE_598992 Chr12 9473641 9473640 + TRUNCATOR 2918 0.0007 (2/2727) 0 * * Os_TE_598990 Chr12 9473329 9473330 - SZ-22_LTR 4403 0.0062 (17/2724) 0 * Os_TE_598989 Os_TE_598989 Chr12 9473325 9473324 + ORSiTERTOOT00226 792 0.0062 (17/2725) 0 * Os_TE_598990 Os_TE_598976 Chr12 9464112 9464113 + COPIA2-LTR_OS 6433 0.0007 (2/2711) 0 * Os_TE_598975 Os_TE_598975 Chr12 9464108 9464107 - COPIA2-LTR_OS 6433 0.0007 (2/2709) 0 * Os_TE_598976 Os_TE_598969 Chr12 9462505 9462504 - RETRO1_LTR 8314 0.2924 (770/2633) -1 * * Os_TE_598967 Chr12 9461995 9461996 + COPIA2-LTR_OS 6433 0.0004 (1/2657) 0 * Os_TE_598966 Os_TE_598966 Chr12 9461991 9461990 - COPIA2-LTR_OS 6433 0.0004 (1/2663) 0 * Os_TE_598967 Os_TE_598945 Chr12 9457429 9457428 - HARB-N1_OS 2589 0.0011 (3/2649) 0 * * Os_TE_598918 Chr12 9440743 9440742 - CACTA-I 1124 0.0020 (6/2960) 0 * * Os_TE_598905 Chr12 9433172 9433173 - RIRE3A_LTR 10580 0.0014 (4/2942) 0 * * Os_TE_598903 Chr12 9433152 9433153 + DITAILA 257 0.0017 (5/2927) 0 * * Os_TE_598896 Chr12 9430378 9430379 - RIREX_LTR 8828 0.0025 (7/2817) 0 * Os_TE_598895 Os_TE_598895 Chr12 9430375 9430374 + RIREX_LTR 8828 0.0025 (7/2820) 0 * Os_TE_598896 Os_TE_598894 Chr12 9430303 9430302 + CASBIG 811 0.0048 (14/2889) 0 * * Os_TE_598850 Chr12 9406912 9406911 - INDITTO 263 0.0017 (5/2891) 0 * * Os_TE_598833 Chr12 9404505 9404504 + Cassandra_OS-LTR 764 0.0724 (206/2846) 0 * * Os_TE_598824 Chr12 9402189 9402188 + SZ-37_LTR 12001 0.0007 (2/2930) 0 * * Os_TE_598818 Chr12 9401497 9401498 - ORSgTEMT01800052 396 0.0017 (5/2899) 0 * Os_TE_598817 Os_TE_598817 Chr12 9401494 9401493 - TYPEG 427 0.0017 (5/2861) 0 * Os_TE_598818 Os_TE_598814 Chr12 9400803 9400802 + ORSgTEMT00900266 245 0.0017 (5/2885) 0 * Os_TE_598813 Os_TE_598813 Chr12 9400800 9400801 + ORSgTEMT00901485 203 0.0276 (81/2934) 0 * Os_TE_598814 Os_TE_598812 Chr12 9400723 9400724 + RMU3_OS 1117 0.0014 (4/2898) 0 * * Os_TE_598808 Chr12 9399384 9399385 - OSTE21 1271 0.0254 (76/2991) 0 * * Os_TE_598806 Chr12 9399069 9399070 + COPI2_LTR 4733 0.0007 (2/2987) 0 * * Os_TE_598800 Chr12 9396511 9396512 + ORSgTETNOOT00908 242 0.0007 (2/2886) 0 * * Os_TE_598798 Chr12 9395435 9395436 - ORSgTERT00201216 11284 0.0042 (12/2868) 0 * Os_TE_598797 Os_TE_598797 Chr12 9395431 9395430 - RIRE2_LTR 11306 0.0044 (13/2944) 0 * Os_TE_598798 Os_TE_598795 Chr12 9394710 9394711 + OLO24 345 0.0020 (6/2949) 0 * Os_TE_598794 Os_TE_598794 Chr12 9394708 9394707 - OLO24 345 0.0020 (6/2943) 0 * Os_TE_598795 Os_TE_598792 Chr12 9393844 9393843 + ORSgTEMT01601591 242 0.0017 (5/2994) 0 * Os_TE_598791 Os_TE_598791 Chr12 9393838 9393839 + STOWAWAY51_OS 246 0.0017 (5/2974) 0 * Os_TE_598792 Os_TE_598790 Chr12 9393748 9393749 + OSTONOR1_LTR 6440 0.2765 (821/2969) 0 * Os_TE_598789 Os_TE_598789 Chr12 9393744 9393743 - OSTONOR1_LTR 6440 0.2808 (832/2963) 0 * Os_TE_598790 Os_TE_598748 Chr12 9383360 9383359 - TRUNCATOR 2918 0.0044 (13/2947) 0 * * Os_TE_598723 Chr12 9367829 9366322 + MERMITEB 1610 0.5442 (1575/2894) 1 Intact * Os_TE_598697 Chr12 9349847 9349846 + ORSiCMCM00100017 5674 0.0025 (7/2827) 0 * * Os_TE_598695 Chr12 9349382 9349383 + TRUNCATOR 2918 0.0099 (28/2834) 0 * * Os_TE_598690 Chr12 9347472 9347473 - SZ-22_LTR 4403 0.0004 (1/2811) 0 * Os_TE_598689 Os_TE_598689 Chr12 9347468 9347467 + ORSiTERTOOT00034 791 0.0004 (1/2808) 0 * Os_TE_598690 Os_TE_598688 Chr12 9347446 9347447 + COPIA2-LTR_OS 6433 0.0021 (6/2821) 0 * Os_TE_598687 Os_TE_598687 Chr12 9347442 9347441 - COPIA2-LTR_OS 6433 0.0021 (6/2806) 0 * Os_TE_598688 Os_TE_598684 Chr12 9344996 9344997 + TRUNCATOR 2918 0.0254 (71/2794) 0 * * Os_TE_598679 Chr12 9343144 9343143 + RIRE3_LTR 12054 0.0046 (13/2810) 0 * * Os_TE_598625 Chr12 9317607 9317608 + TYPEU4 402 0.0045 (8/1788) 0 * * Os_TE_598624 Chr12 9317307 9317308 - RIREX_LTR 8828 0.0025 (6/2418) 0 * Os_TE_598623 Os_TE_598623 Chr12 9317303 9317302 + RIREX_LTR 8828 0.0034 (6/1788) 0 * Os_TE_598624 Os_TE_598615 Chr12 9316158 9316159 + SPMLIKE 10989 0.0115 (20/1739) 0 * * Os_TE_598613 Chr12 9315594 9315595 + OSMAR1 5265 0.0016 (3/1848) 0 * * Os_TE_598606 Chr12 9314989 9314990 - COPIA2-LTR_OS 6433 0.0021 (4/1881) 0 * * Os_TE_598541 Chr12 9290481 9290480 - OsSN3 183 0.0207 (58/2803) 0 * * Os_TE_598513 Chr12 9281148 9281149 + ENSPM4_OS 11610 0.0011 (3/2751) 0 * * Os_TE_598490 Chr12 9273716 9273717 + SEVERIN-2 1952 0.0003 (1/2989) 0 * * Os_TE_598487 Chr12 9272935 9272936 + ORSgTETNOOT00908 242 0.0111 (33/2976) 0 * * Os_TE_598481 Chr12 9271387 9271388 - OSTE33 1012 0.0112 (33/2958) 0 * Os_TE_598480 Os_TE_598480 Chr12 9271378 9271377 + OSTE33 1012 0.0115 (34/2955) 0 * Os_TE_598481 Os_TE_598479 Chr12 9271131 9271130 + ORSgTEMT02300015 257 0.3296 (962/2919) 0 * * Os_TE_598466 Chr12 9267818 9267819 - OSTE24 683 0.0010 (3/2886) 0 * Os_TE_598465 Os_TE_598465 Chr12 9267807 9267806 - OSTE24 683 0.0017 (5/2887) 0 * Os_TE_598466 Os_TE_598464 Chr12 9267751 9267752 + AMYLTP 383 0.0062 (18/2925) 0 * Os_TE_598463 Os_TE_598463 Chr12 9267743 9267742 - AMYLTP 383 0.0065 (19/2932) 0 * Os_TE_598464 Os_TE_598455 Chr12 9263925 9263924 + ORSgTEMT01700632 122 0.0094 (28/2992) 0 * * Os_TE_598454 Chr12 9263855 9263856 - RETRO1_LTR 8314 0.0007 (2/2995) 0 * Os_TE_598453 Os_TE_598453 Chr12 9263851 9263850 + SZLTR 1249 0.0007 (2/2995) 0 * Os_TE_598454 Os_TE_598434 Chr12 9258361 9258362 + COPI2_LTR 4733 0.0003 (1/2978) 0 * Os_TE_598433 Os_TE_598433 Chr12 9258357 9258356 - COPI2_LTR 4733 0.0003 (1/2972) 0 * Os_TE_598434 Os_TE_598432 Chr12 9258210 9258211 - ORSgTETN00200001 10994 0.0010 (3/2955) 0 * Os_TE_598431 Os_TE_598431 Chr12 9258208 9258207 + SPMLIKE 10989 0.0010 (3/2959) 0 * Os_TE_598432 Os_TE_598430 Chr12 9256686 9256687 + RETRO2_LTR 12874 0.0024 (7/2959) 0 * * Os_TE_598428 Chr12 9255075 9255076 - COPIA2-LTR_OS 6433 0.0013 (4/2968) 0 * Os_TE_598427 Os_TE_598427 Chr12 9255071 9255070 + COPIA2-LTR_OS 6433 0.0010 (3/2969) 0 * Os_TE_598428 Os_TE_598421 Chr12 9253017 9251817 + ORSgTETN00200005 1121 0.6218 (1856/2985) 1 Intact Os_TE_598420 Os_TE_598420 Chr12 9251817 9253014 + CACTA-H 1152 0.6190 (1846/2982) 1 Intact Os_TE_598421 Os_TE_598387 Chr12 9236708 9236709 + RIREX_LTR 8828 0.0023 (7/2992) 0 * Os_TE_598386 Os_TE_598386 Chr12 9236704 9236703 - RIREX_LTR 8828 0.0023 (7/2994) 0 * Os_TE_598387 Os_TE_598347 Chr12 9229514 9229513 - RIRE3_LTR 12054 0.0040 (12/2963) 0 * * Os_TE_598317 Chr12 9212864 9212865 - TYPEM 227 0.0027 (8/2976) 0 * Os_TE_598316 Os_TE_598316 Chr12 9212863 9212862 - ORSgTEMT02400179 221 0.0027 (8/2954) 0 * Os_TE_598317 Os_TE_598313 Chr12 9209542 9209541 - ORSiTETNOOT00200 3563 0.0010 (3/2940) 0 * * Os_TE_598311 Chr12 9209491 9209490 - ORSiTETNOOT00199 3501 0.0003 (1/2915) 0 * * Os_TE_598305 Chr12 9207150 9207151 + ORSgTETNOOT00908 242 0.0007 (2/2956) 0 * * Os_TE_598304 Chr12 9207147 9207146 + SPMLIKE 10989 0.0003 (1/2950) 0 * * Os_TE_598295 Chr12 9206498 9206499 + SETARIA2 1142 0.0007 (2/2985) 0 * Os_TE_598294 Os_TE_598294 Chr12 9206494 9206493 + SETARIA2 1142 0.0007 (2/2983) 0 * Os_TE_598295 Os_TE_598293 Chr12 9206300 9206301 + RIREX_LTR 8828 0.0007 (2/2972) 0 * Os_TE_598292 Os_TE_598292 Chr12 9206296 9206295 - RIREX_LTR 8828 0.0007 (2/2973) 0 * Os_TE_598293 Os_TE_598276 Chr12 9201044 9191544 - ENSPM5_OS 9581 0.3017 (897/2973) 1 Intact Os_TE_598272 Os_TE_598272 Chr12 9191544 9201044 + ENSPM6_OS 9815 0.3058 (914/2989) 1 Intact Os_TE_598276 Os_TE_598271 Chr12 9191019 9191020 - ORSgTETN00200001 10994 0.0184 (55/2990) 0 * Os_TE_598270 Os_TE_598270 Chr12 9191014 9191013 + SPMLIKE 10989 0.0187 (56/2989) 0 * Os_TE_598271 Os_TE_598264 Chr12 9185083 9185084 - COPI2_LTR 4733 0.0003 (1/2990) 0 * Os_TE_598263 Os_TE_598263 Chr12 9185079 9185078 + COPI2_LTR 4733 0.0003 (1/2990) 0 * Os_TE_598264 Os_TE_598258 Chr12 9182910 9182909 - SZ-55_LTR 10318 0.0003 (1/2998) 0 * * Os_TE_598249 Chr12 9175738 9175739 + ORSgTEMT00600160 361 0.0010 (3/2984) 0 * * Os_TE_598247 Chr12 9175445 9175446 + RIRE2_LTR 11306 0.2960 (887/2997) 0 * * Os_TE_598232 Chr12 9172375 9172376 + NDNA1TNA_OS 334 0.0003 (1/2958) 0 * Os_TE_598231 Os_TE_598231 Chr12 9172370 9172369 - NDNA1TNA_OS 334 0.0003 (1/2959) 0 * Os_TE_598232 Os_TE_598204 Chr12 9166500 9166499 - RIREX_LTR 8828 0.0003 (1/2966) 0 * * Os_TE_598202 Chr12 9165955 9165954 - CPSC2_LTR 5202 0.0017 (5/2986) 0 * * Os_TE_598197 Chr12 9165525 9165524 + SZ-62LTR 3649 0.0003 (1/2981) 0 * * Os_TE_598182 Chr12 9161077 9161078 + RIREX_LTR 8828 0.0003 (1/2991) 0 * Os_TE_598181 Os_TE_598181 Chr12 9161073 9161072 - RIREX_LTR 8828 0.0003 (1/2995) 0 * Os_TE_598182 Os_TE_598180 Chr12 9160676 9160675 + TRUNCATOR 2918 0.0003 (1/2993) 0 * Os_TE_598179 Os_TE_598179 Chr12 9160675 9160676 - TRUNCATOR 2918 0.0003 (1/2992) 0 * Os_TE_598180 Os_TE_598111 Chr12 9131504 9131505 - RIRE3A_LTR 10580 0.0007 (2/2995) 0 * Os_TE_598110 Os_TE_598110 Chr12 9131500 9131499 - RIRE3_LTR 12054 0.0007 (2/2991) 0 * Os_TE_598111 Os_TE_598096 Chr12 9123883 9123884 + ORSgTEMT01701743 163 0.0049 (13/2628) 0 * * Os_TE_598042 Chr12 9095643 9095644 - DS-RICE4N 715 0.0047 (13/2794) 0 * * Os_TE_598041 Chr12 9095546 9095547 + RIREX_LTR 8828 0.0011 (3/2776) 0 * Os_TE_598040 Os_TE_598040 Chr12 9095542 9095541 - RIREX_LTR 8828 0.0011 (3/2790) 0 * Os_TE_598041 Os_TE_598038 Chr12 9094643 9094644 + RIREX_LTR 8828 0.0046 (13/2797) 0 * Os_TE_598037 Os_TE_598037 Chr12 9094639 9094638 - RIREX_LTR 8828 0.0046 (13/2797) 0 * Os_TE_598038 Os_TE_598036 Chr12 9094222 9094223 + SEVERIN-2 1952 0.0047 (13/2776) 0 * * Os_TE_598028 Chr12 9087299 9087300 + RIRE3_LTR 12054 0.0720 (211/2931) 0 * * Os_TE_598006 Chr12 9080550 9080549 - TRUNCATOR2_LTR 2904 0.0024 (7/2879) 0 * * Os_TE_598000 Chr12 9077453 9077454 + ORSiTEMT06800002 376 0.0753 (222/2948) 0 * * Os_TE_597991 Chr12 9070064 9070065 - TRUNCATOR2_LTR 2904 0.0047 (13/2787) 0 * * Os_TE_597988 Chr12 9068712 9068713 - SZ-38 8643 0.0713 (211/2961) 0 * Os_TE_597987 Os_TE_597987 Chr12 9068708 9068707 + SZ-38 8643 0.0748 (222/2969) 0 * Os_TE_597988 Os_TE_597986 Chr12 9068583 9068584 - MPING 430 0.0007 (2/2976) 0 * Os_TE_597985 Os_TE_597985 Chr12 9068581 9068580 + MPING 430 0.0007 (2/2970) 0 * Os_TE_597986 Os_TE_597984 Chr12 9067784 9067785 - RIREX_LTR 8828 0.0007 (2/2978) 0 * Os_TE_597983 Os_TE_597983 Chr12 9067780 9067779 + RIREX_LTR 8828 0.0007 (2/2983) 0 * Os_TE_597984 Os_TE_597977 Chr12 9067117 9067116 + CRMA1_LTR 7543 0.0003 (1/2872) 0 * * Os_TE_597975 Chr12 9066468 9066692 - ORSgTETNOOT02565 240 0.3218 (872/2710) -1 Intact * Os_TE_597974 Chr12 9066416 9066417 - ORSgTEMT02400246 177 0.0065 (18/2780) 0 * * Os_TE_597972 Chr12 9065986 9065985 - Cassandra_OS-LTR 764 0.0067 (16/2384) 0 * Os_TE_597971 Os_TE_597971 Chr12 9065985 9065986 - TRUNCATOR 2918 0.2060 (607/2947) 0 * Os_TE_597972 Os_TE_597968 Chr12 9065367 9065368 - RIREX_LTR 8828 0.0004 (1/2426) 0 * * Os_TE_597965 Chr12 9064593 9064594 + RIRE3_LTR 12054 0.0037 (11/2977) 0 * * Os_TE_597952 Chr12 9061094 9061095 + MERMITEB 1610 0.2376 (656/2761) 0 * Os_TE_597951 Os_TE_597951 Chr12 9061090 9061089 + MERMITEB 1610 0.2887 (851/2948) 0 * Os_TE_597952 Os_TE_597915 Chr12 9047850 9047849 + ORSgTEMT03600118 431 0.0003 (1/2903) 0 * * Os_TE_597833 Chr12 9014174 8998917 + RIREX_LTR 8828 0.7794 (2180/2797) 1 Intact * Os_TE_597813 Chr12 9004660 9004659 + TRUNCATOR 2918 0.4438 (983/2215) 0 * Os_TE_597812 Os_TE_597812 Chr12 9004659 9004660 - TRUNCATOR 2918 0.4391 (970/2209) 0 * Os_TE_597813 Os_TE_597750 Chr12 8980406 8980623 + ORSgTEMT02400245 225 0.7399 (2151/2907) 1 Intact * Os_TE_597710 Chr12 8960235 8960234 - SZ-35LTR 3853 0.0056 (12/2137) 0 * * Os_TE_597697 Chr12 8958321 8958322 - TRUNCATOR2_LTR 2904 0.0039 (11/2833) 0 * * Os_TE_597695 Chr12 8958286 8956643 + OSTE15 1168 0.7310 (2128/2911) 1 Intact Os_TE_597691 Os_TE_597691 Chr12 8956641 8958284 + OSTE15 1168 0.7377 (2191/2970) 1 Intact Os_TE_597695 Os_TE_597687 Chr12 8955523 8955522 + CACTA-M 1129 0.0017 (5/2952) 0 * * Os_TE_597685 Chr12 8955509 8955508 + ORSgTEMT00100315 323 0.2719 (808/2972) 0 * * Os_TE_597665 Chr12 8948029 8948030 - OSTE9 421 0.0005 (1/2102) 0 * * Os_TE_597656 Chr12 8945537 8945538 - NDNA1TNA_OS 334 0.0020 (6/2955) 0 * Os_TE_597655 Os_TE_597655 Chr12 8945535 8945534 + NDNA1TNA_OS 334 0.0022 (6/2727) 0 * Os_TE_597656 Os_TE_597651 Chr12 8944048 8943337 - MUDR_N7_OS 1283 0.3116 (916/2940) 1 Intact * Os_TE_597650 Chr12 8943269 8943270 + RIRE3_LTR 12054 0.1060 (315/2973) 0 * Os_TE_597649 Os_TE_597649 Chr12 8943265 8943264 - RIRE3_LTR 12054 0.1108 (328/2960) 0 * Os_TE_597650 Os_TE_597648 Chr12 8943141 8943142 - SPMLIKE 10989 0.0007 (2/2983) 0 * * Os_TE_597645 Chr12 8942891 8942890 - RIRE2_LTR 11306 0.0003 (1/2988) 0 * * Os_TE_597580 Chr12 8917051 8917050 - TRUNCATOR2_LTR 2904 0.0033 (10/2988) 0 * * Os_TE_597572 Chr12 8913916 8913917 - SC-3_LTR 5748 0.0007 (2/2987) 0 * Os_TE_597571 Os_TE_597571 Chr12 8913912 8913911 + ORSiTERTOOT00296 5553 0.0007 (2/2987) 0 * Os_TE_597572 Os_TE_597541 Chr12 8902083 8902082 + TRUNCATOR2_LTR 2904 0.0137 (41/2986) 0 * * Os_TE_597530 Chr12 8892055 8892054 - COPIA2-LTR_OS 6433 0.0102 (29/2833) 0 * * Os_TE_597507 Chr12 8882617 8881448 + CACTA-H 1152 0.3177 (929/2924) 1 Intact Os_TE_597506 Os_TE_597506 Chr12 8881448 8882616 - ORSgTETN00200001 10994 0.4576 (934/2041) 1 Intact Os_TE_597507 Os_TE_597497 Chr12 8878212 8878211 - ORSgTEMT01602413 239 0.0014 (4/2962) 0 * Os_TE_597496 Os_TE_597496 Chr12 8878209 8878210 + ORSgTEMT01601143 237 0.0010 (3/2972) 0 * Os_TE_597497 Os_TE_597492 Chr12 8875446 8875447 + OSTONOR1_LTR 6440 0.0028 (8/2814) 0 * * Os_TE_597490 Chr12 8875201 8875200 - SEVERIN-2 1952 0.0017 (5/2971) 0 * * Os_TE_597489 Chr12 8870677 8870678 + STOWAWAY9_OS 235 0.0092 (20/2184) 0 * * Os_TE_597488 Chr12 8870597 8870596 + ORSgTEMT01700715 134 0.2875 (848/2950) 0 * Os_TE_597487 Os_TE_597487 Chr12 8870596 8870597 - ORSgTEMT01700336 154 0.2953 (876/2966) 0 * Os_TE_597488 Os_TE_597471 Chr12 8863694 8863693 + TRUNCATOR 2918 0.0270 (62/2293) 0 * * Os_TE_597470 Chr12 8861576 8861577 + RETRO2A_LTR 12895 0.0007 (2/2955) 0 * Os_TE_597469 Os_TE_597469 Chr12 8861572 8861571 - RETRO1_LTR 8314 0.0007 (2/2964) 0 * Os_TE_597470 Os_TE_597468 Chr12 8859354 8859355 + RMU2A1C 1169 0.3000 (850/2833) 0 * * Os_TE_597459 Chr12 8856883 8856882 - RETROSAT2LTR 12796 0.0620 (185/2983) 0 * * Os_TE_597455 Chr12 8855333 8855332 - DITTO-2 235 0.0021 (6/2907) 0 * * Os_TE_597454 Chr12 8855275 8855274 + ORSgTEMT01600575 238 0.6427 (1914/2978) 0 * * Os_TE_597453 Chr12 8855272 8855273 - ORSgTEMT01600747 238 0.6250 (1795/2872) 0 * * Os_TE_597452 Chr12 8855268 8855267 + ORSgTEMT01600891 233 0.6959 (2064/2966) 0 * * Os_TE_597440 Chr12 8854253 8854254 - MERMITE18D 1491 0.0025 (7/2831) 0 * Os_TE_597439 Os_TE_597439 Chr12 8854247 8854246 - MERMITE-18 1263 0.0004 (1/2735) 0 * Os_TE_597440 Os_TE_597424 Chr12 8848814 8848815 - RIREX_LTR 8828 0.0309 (92/2978) 0 * Os_TE_597423 Os_TE_597423 Chr12 8848810 8848809 + RIREX_LTR 8828 0.0306 (91/2978) 0 * Os_TE_597424 Os_TE_597421 Chr12 8848405 8848406 - TRUNCATOR 2918 0.0007 (2/2979) 0 * * Os_TE_597415 Chr12 8847983 8847982 - ORSgTEMT00100043 154 0.0003 (1/2933) 0 * * Os_TE_597408 Chr12 8847719 8847468 - TAMI2 254 0.3529 (1017/2882) 1 Intact Os_TE_597407 Os_TE_597407 Chr12 8847474 8847719 - TAMI2 254 0.3612 (1031/2854) 1 Intact Os_TE_597408 Os_TE_597398 Chr12 8846885 8846884 - HELITRON3_OS 12693 0.0040 (12/2965) 0 * Os_TE_597397 Os_TE_597397 Chr12 8846884 8846885 + HELITRON3_OS 12693 0.0041 (12/2955) 0 * Os_TE_597398 Os_TE_597395 Chr12 8846161 8846160 + CASTAWAY 364 0.0037 (11/2991) 0 * * Os_TE_597368 Chr12 8837721 8837722 - RIREX_LTR 8828 0.0007 (2/2932) 0 * Os_TE_597367 Os_TE_597367 Chr12 8837717 8837716 + RIREX_LTR 8828 0.0003 (1/2936) 0 * Os_TE_597368 Os_TE_597365 Chr12 8837658 8837657 - RIRE2_LTR 11306 0.0225 (66/2937) 0 * * Os_TE_597363 Chr12 8837569 8837568 + ENSPM5_OS 9581 0.0003 (1/2962) 0 * * Os_TE_597360 Chr12 8836137 8836136 + RIRE3A_LTR 10580 0.0866 (70/808) -1 * * Os_TE_597349 Chr12 8831778 8831777 + INDITTO 263 0.0023 (7/2987) 0 * * Os_TE_597346 Chr12 8829540 8829541 - COPI2_LTR 4733 0.0070 (20/2841) 0 * Os_TE_597345 Os_TE_597345 Chr12 8829536 8829535 + COPI2_LTR 4733 0.0084 (24/2859) 0 * Os_TE_597346 Os_TE_597336 Chr12 8827141 8827140 + OLO24C 356 0.6176 (1691/2738) 0 * * Os_TE_597333 Chr12 8824109 8824108 - HATOS1 3488 0.0126 (15/1186) 0 * * Os_TE_597332 Chr12 8823577 8823576 + TRUNCATOR 2918 0.0090 (27/2984) 0 * Os_TE_597331 Os_TE_597331 Chr12 8823576 8823577 - TRUNCATOR 2918 0.0087 (26/2984) 0 * Os_TE_597332 Os_TE_597329 Chr12 8821095 8821096 + SC-8_LTR 4951 0.0073 (22/2998) 0 * * Os_TE_597328 Chr12 8820339 8820340 - OSTONOR1_LTR 6440 0.0007 (2/2995) 0 * Os_TE_597327 Os_TE_597327 Chr12 8820335 8820334 + OSTONOR1_LTR 6440 0.0007 (2/2997) 0 * Os_TE_597328 Os_TE_597318 Chr12 8818700 8818844 - ORSgTEMT00501204 149 0.6110 (1170/1915) 1 Intact * Os_TE_597312 Chr12 8817491 8817332 + STOWAWAY1_OS 149 0.4292 (1145/2668) 1 Intact * Os_TE_597294 Chr12 8810016 8809724 + SINE9_OS 293 0.3914 (1148/2933) 1 Intact Os_TE_597293 Os_TE_597293 Chr12 8809723 8810016 - SINE9_OS 293 0.3885 (1136/2924) 1 Intact Os_TE_597294 Os_TE_597291 Chr12 8809639 8809638 + RIRE2_LTR 11306 0.0010 (3/2871) 0 * * Os_TE_597290 Chr12 8809472 8808583 - COPIA2-LTR_OS 6433 0.3883 (1142/2941) 1 Solo_LTR Os_TE_597288 Os_TE_597288 Chr12 8808583 8809472 + COPIA2-LTR_OS 6433 0.4433 (1125/2538) 1 Solo_LTR Os_TE_597290 Os_TE_597286 Chr12 8808147 8808148 - OSTE33 1012 0.0041 (12/2962) 0 * Os_TE_597285 Os_TE_597285 Chr12 8808138 8808137 - OSTE33 1012 0.0048 (13/2727) 0 * Os_TE_597286 Os_TE_597284 Chr12 8807991 8807990 + STOWAWAY51_OS 246 0.6247 (1856/2971) 0 * * Os_TE_597280 Chr12 8801477 8801476 + TWIFB1 3737 0.0041 (4/964) 0 * * Os_TE_597279 Chr12 8801469 8801468 - TNR2A 152 0.1402 (186/1327) 0 * * Os_TE_597278 Chr12 8801450 8801147 + ORSgTEMT00100436 320 0.5699 (811/1423) 1 Intact Os_TE_597276 Os_TE_597276 Chr12 8801147 8801448 - ORSgTEMT00101384 299 0.6765 (1152/1703) 1 Intact Os_TE_597278 Os_TE_597272 Chr12 8799590 8799589 - STOWAWAY44_OS 240 0.6117 (1752/2864) 0 * * Os_TE_597268 Chr12 8797754 8797755 - NDNA1TNA_OS 334 0.0086 (10/1167) 0 * Os_TE_597267 Os_TE_597267 Chr12 8797752 8797751 + NDNA1TNA_OS 334 0.0086 (10/1163) 0 * Os_TE_597268 Os_TE_597265 Chr12 8790967 8790966 + STOWAWAY51_OS 246 0.0004 (1/2581) 0 * * Os_TE_597263 Chr12 8790758 8790759 - ORSgTEMT00900099 250 0.0007 (2/2833) 0 * * Os_TE_597248 Chr12 8784276 8790141 - SZ-36LTR 5825 0.3359 (944/2810) 1 Intact * Os_TE_597238 Chr12 8778204 8778203 + ORSgTEMT00100709 333 0.6245 (1854/2969) 0 * Os_TE_597237 Os_TE_597237 Chr12 8778203 8778204 - ORSgTEMT00100799 337 0.6241 (1851/2966) 0 * Os_TE_597238 Os_TE_597209 Chr12 8767757 8767758 - RIRE3_LTR 12054 0.0009 (1/1078) 0 * * Os_TE_597190 Chr12 8761167 8761168 - CASBIG 811 0.0018 (2/1141) 0 * * Os_TE_597183 Chr12 8758993 8758994 - TRUNCATOR2_LTR 2904 0.0037 (11/2946) 0 * Os_TE_597182 Os_TE_597182 Chr12 8758989 8758988 + TRUNCATOR2_LTR 2904 0.0027 (8/2938) 0 * Os_TE_597183 Os_TE_597180 Chr12 8758641 8758640 - ORSgTETN00200001 10994 0.5689 (1659/2916) 0 * Os_TE_597179 Os_TE_597179 Chr12 8758640 8758641 + SPMLIKE 10989 0.3912 (802/2050) 0 * Os_TE_597180 Os_TE_597177 Chr12 8758455 8758456 - MERMITE18D 1491 0.5595 (1449/2590) 0 * * Os_TE_597165 Chr12 8754384 8754383 - COPI2_LTR 4733 0.0004 (1/2710) 0 * * Os_TE_597159 Chr12 8748183 8748184 + SPMLIKE 10989 0.0010 (3/2952) 0 * * Os_TE_597156 Chr12 8746329 8746330 - SPMLIKE 10989 0.0010 (3/2969) 0 * * Os_TE_597155 Chr12 8746151 8745123 - ORSiTEMT01300001 950 0.1460 (432/2959) 1 Intact * Os_TE_597153 Chr12 8744859 8744858 - RIRE2_LTR 11306 0.0657 (196/2981) 0 * * Os_TE_597150 Chr12 8742841 8742842 + RETROSAT2LTRA 3112 0.0025 (3/1179) 0 * * Os_TE_597127 Chr12 8730964 8730965 + RIREX_LTR 8828 0.0071 (8/1123) 0 * Os_TE_597126 Os_TE_597126 Chr12 8730960 8730959 - RIREX_LTR 8828 0.0072 (8/1117) 0 * Os_TE_597127 Os_TE_597122 Chr12 8729016 8729017 + COPIA2-LTR_OS 6433 0.0009 (1/1167) 0 * Os_TE_597121 Os_TE_597121 Chr12 8729012 8729011 - COPIA2-LTR_OS 6433 0.0009 (1/1168) 0 * Os_TE_597122 Os_TE_597091 Chr12 8713484 8713103 - AMYLTP 383 0.3841 (436/1135) 1 Intact * Os_TE_597053 Chr12 8697314 8697315 - SZ-COM 1308 0.0009 (1/1144) 0 * * Os_TE_597050 Chr12 8694940 8694939 + RIREX_LTR 8828 0.0013 (3/2384) 0 * * Os_TE_597038 Chr12 8688880 8688879 - COPIO_LTR 11693 0.0018 (5/2838) 0 * * Os_TE_597020 Chr12 8679336 8679337 - SZ-9LTR 965 0.0024 (3/1248) 0 * * Os_TE_596986 Chr12 8650699 8650700 - RETRO1_LTR 8314 0.0012 (2/1634) 0 * * Os_TE_596984 Chr12 8650105 8650104 - TRUNCATOR2_LTR 2904 0.0048 (3/625) 0 * * Os_TE_596794 Chr12 8572533 8572534 + SZ-44LTR 1408 0.0016 (2/1230) 0 * * Os_TE_596648 Chr12 8509788 8511241 - ORSiCMCM00100013 9728 0.5718 (1166/2039) 1 Intact * Os_TE_596628 Chr12 8504602 8504603 - NDNA1TNA_OS 334 0.5101 (581/1139) 0 * Os_TE_596627 Os_TE_596627 Chr12 8504600 8504599 + NDNA1TNA_OS 334 0.5062 (574/1134) 0 * Os_TE_596628 Os_TE_596621 Chr12 8503457 8503456 - ORSgTETN00200001 10994 0.0216 (32/1484) 0 * * Os_TE_596501 Chr12 8443556 8443557 - RIREX_LTR 8828 0.0027 (3/1113) 0 * * Os_TE_596498 Chr12 8442094 8442093 - RIRE2_LTR 11306 0.2866 (582/2031) 0 * * Os_TE_596494 Chr12 8441884 8441885 + RIRE3A_LTR 10580 0.0005 (1/2019) 0 * Os_TE_596493 Os_TE_596493 Chr12 8441880 8441879 - RIRE3A_LTR 10580 0.0005 (1/2023) 0 * Os_TE_596494 Os_TE_596484 Chr12 8435264 8435265 + SZ-40LTR 2465 0.0025 (5/1993) 0 * * Os_TE_596478 Chr12 8434334 8434333 - TRUNCATOR 2918 0.0035 (7/2007) 0 * * Os_TE_596431 Chr12 8418120 8418121 + STOWAWAY18_OS 216 0.0015 (3/2018) 0 * * Os_TE_596424 Chr12 8415675 8415674 - TREP215 239 0.0109 (22/2022) 0 * * Os_TE_596421 Chr12 8414976 8414975 - ORSgTERT00201216 11284 0.0014 (3/2113) 0 * * Os_TE_596417 Chr12 8413303 8413302 + TRUNCATOR 2918 0.0005 (1/2111) 0 * * Os_TE_596406 Chr12 8410709 8410710 + DS-RICE4N 715 0.0120 (23/1910) 0 * * Os_TE_596370 Chr12 8398936 8398937 + SPMLIKE 10989 0.0033 (7/2121) 0 * Os_TE_596369 Os_TE_596369 Chr12 8398935 8398934 - SPMLIKE 10989 0.0028 (6/2118) 0 * Os_TE_596370 Os_TE_596368 Chr12 8398666 8398665 + SPMLIKE 10989 0.0014 (3/2094) 0 * Os_TE_596367 Os_TE_596367 Chr12 8398654 8398655 - ORSgTETN00200001 10994 0.0009 (2/2109) 0 * Os_TE_596368 Os_TE_596354 Chr12 8397061 8397060 + COPIA2-LTR_OS 6433 0.0014 (3/2126) 0 * * Os_TE_596338 Chr12 8382630 8382631 - SZ-22_LTR 4403 0.0025 (5/1961) 0 * * Os_TE_596324 Chr12 8381239 8381238 - RIREX_LTR 8828 0.0083 (16/1937) 0 * * Os_TE_596279 Chr12 8364300 8364301 - ORSiTERTOOT00441 4741 0.0005 (1/2009) 0 * * Os_TE_596259 Chr12 8352094 8352095 - SPMLIKE 10989 0.0066 (14/2109) 0 * * Os_TE_596257 Chr12 8351810 8351809 - ORSgTETN00200001 10994 0.3789 (698/1842) 0 * * Os_TE_596225 Chr12 8339072 8335658 + ORSiCMCM00100019 2717 0.5490 (1110/2022) 1 Intact * Os_TE_596208 Chr12 8332349 8332350 + COPIA2-LTR_OS 6433 0.0029 (4/1380) 0 * Os_TE_596207 Os_TE_596207 Chr12 8332345 8332344 - COPIA2-LTR_OS 6433 0.0029 (4/1379) 0 * Os_TE_596208 Os_TE_596199 Chr12 8329152 8329059 + WUWU 113 0.8063 (1832/2272) 1 Intact * Os_TE_596198 Chr12 8328149 8328150 - COPIA2-LTR_OS 6433 0.0004 (1/2283) 0 * Os_TE_596197 Os_TE_596197 Chr12 8328145 8328144 + COPIA2-LTR_OS 6433 0.0004 (1/2288) 0 * Os_TE_596198 Os_TE_596187 Chr12 8323145 8323146 + SEVERIN-2 1952 0.0009 (2/2242) 0 * * Os_TE_596183 Chr12 8321957 8321956 + ORSgTEMT01602181 239 0.0017 (4/2418) 0 * Os_TE_596182 Os_TE_596182 Chr12 8321954 8321955 - ORSgTEMT01601432 239 0.0016 (4/2546) 0 * Os_TE_596183 Os_TE_596177 Chr12 8320610 8320611 + TRUNCATOR 2918 0.3732 (876/2347) 0 * * Os_TE_596139 Chr12 8306029 8306030 + ORSgTEMT04800085 366 0.3865 (896/2318) 0 * Os_TE_596138 Os_TE_596138 Chr12 8306027 8306026 - ORSgTEMT04800063 360 0.3865 (884/2287) 0 * Os_TE_596139 Os_TE_596137 Chr12 8305853 8305854 - RETROSAT2LTR 12796 0.0005 (1/2169) 0 * * Os_TE_596134 Chr12 8305180 8305181 - COPIA1-LTR_OS 9292 0.4088 (879/2150) 0 * * Os_TE_596122 Chr12 8302126 8302127 + SEVERIN-2 1952 0.0103 (21/2034) 0 * * Os_TE_596121 Chr12 8301861 8301862 - RIREX_LTR 8828 0.0202 (44/2176) 0 * Os_TE_596120 Os_TE_596120 Chr12 8301857 8301856 + RIREX_LTR 8828 0.0298 (40/1344) 0 * Os_TE_596121 Os_TE_596089 Chr12 8288661 8288662 - COPIA2-LTR_OS 6433 0.0005 (1/2147) 0 * * Os_TE_596080 Chr12 8282670 8282115 - SZ-50_LTR 11691 0.6540 (1219/1864) 1 Solo_LTR * Os_TE_596079 Chr12 8281783 8281578 - ORSgTEMT02400179 221 0.6572 (1300/1978) 1 Intact Os_TE_596077 Os_TE_596077 Chr12 8281579 8281753 - ORSgTEMT02400009 192 0.8681 (1250/1440) 1 Intact Os_TE_596079 Os_TE_596076 Chr12 8281505 8281506 + GYPSY-A_LTR 8951 0.0272 (35/1285) 0 * * Os_TE_596073 Chr12 8280900 8280899 + ORSgTERT00200633 1080 0.8830 (2143/2427) 0 * * Os_TE_596072 Chr12 8280214 8279977 + ORSgTEMT01602413 239 0.4256 (1252/2942) 1 Intact Os_TE_596070 Os_TE_596070 Chr12 8279977 8280214 + ORSgTEMT01602626 237 0.5966 (1260/2112) 1 Intact Os_TE_596072 Os_TE_596068 Chr12 8278632 8278631 + ORSgTEMT01701663 106 0.0101 (21/2073) 0 * * Os_TE_596062 Chr12 8277929 8277930 + COPIA2-LTR_OS 6433 0.0104 (31/2969) 0 * Os_TE_596061 Os_TE_596061 Chr12 8277925 8277924 - COPIA2-LTR_OS 6433 0.0117 (31/2657) 0 * Os_TE_596062 Os_TE_596046 Chr12 8270364 8277767 + RIREX_LTR 8828 0.4228 (1260/2980) 1 Intact * Os_TE_596041 Chr12 8265835 8265836 + STOWAWAY30_OS 147 0.4477 (1014/2265) 0 * * Os_TE_596038 Chr12 8265487 8265488 - ORSgTEMT01601432 239 0.2374 (653/2751) 0 * * Os_TE_596037 Chr12 8265222 8265223 + RIREX_LTR 8828 0.2980 (708/2376) 0 * * Os_TE_596025 Chr12 8261334 8261335 - ORSgTETN00200001 10994 0.2283 (627/2746) 0 * Os_TE_596024 Os_TE_596024 Chr12 8261332 8261331 + SPMLIKE 10989 0.2421 (670/2768) 0 * Os_TE_596025 Os_TE_596023 Chr12 8261276 8261277 + RIREX_LTR 8828 0.0007 (2/2756) 0 * * Os_TE_596020 Chr12 8260760 8260759 + TRUNCATOR 2918 0.2110 (582/2758) 0 * Os_TE_596019 Os_TE_596019 Chr12 8260759 8260760 - TRUNCATOR 2918 0.1881 (506/2690) 0 * Os_TE_596020 Os_TE_596000 Chr12 8246073 8246072 - TRUNCATOR 2918 0.0022 (6/2780) 0 * * Os_TE_595993 Chr12 8244354 8244355 + RETROSAT2LTRA 3112 0.0085 (22/2587) 0 * Os_TE_595992 Os_TE_595992 Chr12 8244350 8244349 - RETROSAT2LTRA 3112 0.0085 (22/2591) 0 * Os_TE_595993 Os_TE_595991 Chr12 8244265 8244266 + Cassandra_OS-LTR 764 0.0004 (1/2588) 0 * * Os_TE_595980 Chr12 8239153 8239154 + RIREX_LTR 8828 0.0008 (2/2620) 0 * Os_TE_595979 Os_TE_595979 Chr12 8239149 8239148 - RIREX_LTR 8828 0.0008 (2/2593) 0 * Os_TE_595980 Os_TE_595978 Chr12 8239045 8239046 - BUHUI 375 0.0004 (1/2624) 0 * * Os_TE_595977 Chr12 8238918 8238919 + SEVERIN-2 1952 0.0019 (5/2596) 0 * * Os_TE_595944 Chr12 8226592 8191239 - ATLANTYS-LTR_OS 13740 0.8743 (1162/1329) 1 Intact * Os_TE_595830 Chr12 8190612 8190613 + RIRE3_LTR 12054 0.0115 (23/2003) 0 * * Os_TE_595829 Chr12 8190573 8190574 - COPI2_LTR 4733 0.0004 (1/2572) 0 * Os_TE_595828 Os_TE_595828 Chr12 8190569 8190568 + COPI2_LTR 4733 0.0005 (1/2011) 0 * Os_TE_595829 Os_TE_595827 Chr12 8190331 8190332 + RIREX_LTR 8828 0.0053 (14/2626) 0 * Os_TE_595826 Os_TE_595826 Chr12 8190327 8190326 - RIREX_LTR 8828 0.0056 (14/2514) 0 * Os_TE_595827 Os_TE_595823 Chr12 8190116 8190117 + ORSgTETNOOT00054 239 0.0004 (1/2628) 0 * Os_TE_595822 Os_TE_595822 Chr12 8190114 8190113 + ORSgTETNOOT00908 242 0.0004 (1/2635) 0 * Os_TE_595823 Os_TE_595821 Chr12 8190024 8190025 - RIRE3_LTR 12054 0.0011 (3/2610) 0 * Os_TE_595820 Os_TE_595820 Chr12 8190020 8190019 + RIRE3_LTR 12054 0.0012 (3/2604) 0 * Os_TE_595821 Os_TE_595815 Chr12 8188618 8188619 - RIRE2_LTR 11306 0.0013 (3/2364) 0 * * Os_TE_595803 Chr12 8182969 8182968 + ORSgTEMT00100531 325 0.0005 (1/2077) 0 * * Os_TE_595801 Chr12 8182670 8182671 - CPSC3_LTR 5175 0.0009 (2/2260) 0 * Os_TE_595800 Os_TE_595800 Chr12 8182666 8182665 + CPSC3_LTR 5175 0.0009 (2/2258) 0 * Os_TE_595801 Os_TE_595795 Chr12 8180784 8180785 + MERMITE-18 1263 0.0005 (1/2049) 0 * Os_TE_595794 Os_TE_595794 Chr12 8180778 8180777 + MERMITE18D 1491 0.0956 (215/2250) 0 * Os_TE_595795 Os_TE_595780 Chr12 8165200 8165201 - COPI2_LTR 4733 0.0860 (99/1151) 0 * * Os_TE_595764 Chr12 8158200 8158199 - STOWAWAY36_OS 268 0.0009 (1/1136) 0 * * Os_TE_595757 Chr12 8155649 8155650 - RIREX_LTR 8828 0.0041 (5/1211) 0 * Os_TE_595756 Os_TE_595756 Chr12 8155645 8155644 - RIREX_LTR 8828 0.0041 (5/1213) 0 * Os_TE_595757 Os_TE_595690 Chr12 8126522 8126521 + TWIFBIG 3567 0.0363 (101/2779) 0 * * Os_TE_595689 Chr12 8126430 8126429 + SEVERIN-2 1952 0.0051 (14/2768) 0 * * Os_TE_595688 Chr12 8125927 8114609 - RIRE2_LTR 11306 0.7872 (2179/2768) 1 Intact * Os_TE_595663 Chr12 8109348 8109349 - RIRE3A_LTR 10580 0.0005 (1/2207) 0 * * Os_TE_595660 Chr12 8108026 8108025 - ORSgTEMT01600747 238 0.2030 (568/2798) 0 * * Os_TE_595659 Chr12 8108023 8108024 - ORSgTEMT01602413 239 0.1791 (489/2731) 0 * Os_TE_595658 Os_TE_595658 Chr12 8108019 8108018 + ORSgTEMT01601018 231 0.2023 (566/2798) 0 * Os_TE_595659 Os_TE_595657 Chr12 8107984 8107985 - TRUNCATOR2_LTR 2904 0.0004 (1/2270) 0 * Os_TE_595656 Os_TE_595656 Chr12 8107980 8107979 + ORSiCMCM00100019 2717 0.0004 (1/2785) 0 * Os_TE_595657 Os_TE_595623 Chr12 8091157 8091158 + SZ-48LTR 3632 0.2046 (567/2771) 0 * * Os_TE_595611 Chr12 8088646 8088645 + RIREX_LTR 8828 0.0004 (1/2760) 0 * * Os_TE_595610 Chr12 8088515 8088514 + SEVERIN-2 1952 0.2032 (567/2791) 0 * * Os_TE_595606 Chr12 8088148 8088147 + Mudr5_OS 5952 0.0012 (2/1699) 0 * * Os_TE_595601 Chr12 8087516 8087805 - STOWAWAY11_OS 292 0.8081 (2245/2778) 1 Intact * Os_TE_595596 Chr12 8086994 8086873 - ORSgTEMT01701348 105 0.8036 (2246/2795) 1 Intact Os_TE_595594 Os_TE_595594 Chr12 8086868 8086989 + ORSgTEMT01700637 157 0.8085 (2251/2784) 1 Intact Os_TE_595596 Os_TE_595591 Chr12 8086178 8086177 - RIREX_LTR 8828 0.0018 (5/2796) 0 * * Os_TE_595589 Chr12 8085883 8085884 - GYPSY-B_LTR 7068 0.1848 (504/2728) 0 * * Os_TE_595586 Chr12 8084729 8084730 - RIRE2_LTR 11306 0.0022 (6/2743) 0 * Os_TE_595585 Os_TE_595585 Chr12 8084725 8084724 + RIRE2_LTR 11306 0.0022 (6/2747) 0 * Os_TE_595586 Os_TE_595583 Chr12 8084634 8084633 - ORSgTERT00201216 11284 0.0013 (3/2236) 0 * * Os_TE_595577 Chr12 8082923 8082922 - RETROSAT2LTR 12796 0.0107 (24/2247) 0 * * Os_TE_595569 Chr12 8077982 8077983 - SINE03_OS 360 0.1706 (458/2684) 0 * * Os_TE_595566 Chr12 8077627 8077271 - SINE03_OS 360 0.8263 (2360/2856) 1 Intact * Os_TE_595554 Chr12 8075110 8075109 - TRUNCATOR2_LTR 2904 0.0004 (1/2291) 0 * * Os_TE_595553 Chr12 8074302 8074301 - STOWAWAY1_OS 149 0.2296 (665/2896) 0 * Os_TE_595552 Os_TE_595552 Chr12 8074301 8074302 - ORSgTEMT01701056 154 0.2277 (655/2877) 0 * Os_TE_595553 Os_TE_595548 Chr12 8071699 8071700 + CASTAWAY 364 0.0194 (57/2944) 0 * Os_TE_595547 Os_TE_595547 Chr12 8071697 8071696 - ORSgTEMT00600085 364 0.0217 (64/2949) 0 * Os_TE_595548 Os_TE_595544 Chr12 8070752 8070753 + STOWAWAY10_OS 259 0.2416 (657/2719) 0 * Os_TE_595543 Os_TE_595543 Chr12 8070751 8070750 - STOWAWAY10_OS 259 0.2956 (857/2899) 0 * Os_TE_595544 Os_TE_595532 Chr12 8069795 8069796 + RIREX_LTR 8828 0.0020 (6/2970) 0 * * Os_TE_595528 Chr12 8069514 8069513 + COPI1_LTR 4721 0.3089 (870/2816) 0 * * Os_TE_595527 Chr12 8069327 8069326 + TRUNCATOR 2918 0.0243 (67/2762) 0 * * Os_TE_595526 Chr12 8069135 8058641 - ORSgTETN00200001 10994 0.5329 (980/1839) -1 Intact Os_TE_595507 Os_TE_595507 Chr12 8058639 8069135 + CACTA-B 1103 0.7315 (2084/2849) 1 Intact Os_TE_595526 Os_TE_595505 Chr12 8058426 8058427 - ORSgTERT00201216 11284 0.0021 (6/2891) 0 * * Os_TE_595499 Chr12 8057186 8057187 + TRUNCATOR2_LTR 2904 0.0050 (11/2193) 0 * Os_TE_595498 Os_TE_595498 Chr12 8057182 8057181 - TRUNCATOR2_LTR 2904 0.0059 (13/2194) 0 * Os_TE_595499 Os_TE_595484 Chr12 8048432 8048433 + TRUNCATOR 2918 0.0028 (6/2180) 0 * * Os_TE_595472 Chr12 8043332 8043200 + ORSgTEMT00500476 150 0.7277 (2084/2864) 1 Intact Os_TE_595468 Os_TE_595468 Chr12 8043180 8043330 + ORSgTEMT00500385 153 0.7219 (2116/2931) 1 Intact Os_TE_595472 Os_TE_595465 Chr12 8042901 8042900 - MuDR3_OS 8604 0.2729 (792/2902) 0 * * Os_TE_595424 Chr12 8024969 8024970 + TWIFB1 3737 0.0761 (178/2340) 0 * * Os_TE_595423 Chr12 8024936 8024937 - AMYLTP 383 0.2271 (555/2444) 0 * Os_TE_595422 Os_TE_595422 Chr12 8024930 8024929 + AMYLTP 383 0.2105 (499/2371) 0 * Os_TE_595423 Os_TE_595421 Chr12 8024007 8024006 + ORSgTEMT00600526 356 0.0860 (212/2464) 0 * Os_TE_595420 Os_TE_595420 Chr12 8024003 8024004 - CASTAWAY 364 0.0844 (207/2452) 0 * Os_TE_595421 Os_TE_595375 Chr12 8004558 8004559 - ORSiTETNOOT00200 3563 0.2156 (524/2430) 0 * Os_TE_595374 Os_TE_595374 Chr12 8004551 8004550 + TWIF 586 0.2024 (502/2480) 0 * Os_TE_595375 Os_TE_595368 Chr12 8000452 8000451 - STOLAB 312 0.2241 (669/2985) 0 * * Os_TE_595367 Chr12 7999826 7999825 - ORSgTEMT02600002 356 0.2212 (646/2920) 0 * Os_TE_595366 Os_TE_595366 Chr12 7999819 7999820 - ORSgTEMT00101174 225 0.1963 (558/2843) 0 * Os_TE_595367 Os_TE_595364 Chr12 7999428 7999121 - STOWAWAY34_OS 256 0.7970 (2210/2773) 1 Intact * Os_TE_595356 Chr12 7995956 7995957 - ORSgTEMT01600639 228 0.2261 (672/2972) 0 * * Os_TE_595335 Chr12 7988727 7988726 + SINE03_OS 360 0.0212 (63/2969) 0 * * Os_TE_595334 Chr12 7988137 7988138 - STOWAWAY12_OS 312 0.0245 (73/2982) 0 * * Os_TE_595326 Chr12 7982739 7984295 + ATLANTYS-LTR_OS 13740 0.6377 (1505/2360) 1 Solo_LTR * Os_TE_595324 Chr12 7982349 7978753 - GYPSY-A_LTR 8951 0.7088 (2088/2946) 1 Solo_LTR Os_TE_595315 Os_TE_595315 Chr12 7978753 7982349 + GYPSY-A_LTR 8951 0.8686 (2129/2451) 1 Solo_LTR Os_TE_595324 Os_TE_595314 Chr12 7978131 7947217 + ORSiCMCM00100013 9728 0.7081 (2086/2946) 1 Intact * Os_TE_595256 Chr12 7946306 7946305 - TRUNCATOR 2918 0.2080 (622/2990) 0 * * Os_TE_595224 Chr12 7936925 7936630 + ORSgTEMT01900030 288 0.7157 (2127/2972) 1 Intact Os_TE_595222 Os_TE_595222 Chr12 7936620 7936923 + ORSgTEMT01900027 302 0.7248 (2075/2863) 1 Intact Os_TE_595224 Os_TE_595206 Chr12 7932854 7932853 - STOWAWAY49_OS 241 0.6237 (1674/2684) 0 * Os_TE_595205 Os_TE_595205 Chr12 7932848 7932849 + STOWAWAY43_OS 233 0.6346 (1756/2767) 0 * Os_TE_595206 Os_TE_595203 Chr12 7931719 7931720 + COPIA2-LTR_OS 6433 0.0014 (4/2882) 0 * * Os_TE_595198 Chr12 7929290 7930190 + JINHUA 479 0.3919 (1169/2983) 1 Intact * Os_TE_595189 Chr12 7922748 7922749 + ORSiTERTOOT00296 5553 0.0007 (2/2987) 0 * Os_TE_595188 Os_TE_595188 Chr12 7922744 7922743 - SC-3_LTR 5748 0.0007 (2/2986) 0 * Os_TE_595189 Os_TE_595180 Chr12 7915438 7904281 - ORSiTETN00200010 10539 0.1179 (350/2969) -1 Intact Os_TE_595175 Os_TE_595175 Chr12 7904281 7915438 + SPMLIKE 10989 0.1231 (367/2981) 1 Intact Os_TE_595180 Os_TE_595172 Chr12 7903955 7903954 - ORSgTEMT01601432 239 0.6509 (1935/2973) 0 * Os_TE_595171 Os_TE_595171 Chr12 7903952 7903953 + ORSgTEMT01602181 239 0.6379 (1839/2883) 0 * Os_TE_595172 Os_TE_595167 Chr12 7903315 7903639 - ORSgTEMT00101116 321 0.3602 (1077/2990) 1 Intact * Os_TE_595165 Chr12 7902946 7902947 + ORSgTEMT00901288 246 0.5370 (1204/2242) 0 * * Os_TE_595152 Chr12 7901965 7901966 + TELIA 141 0.0009 (1/1111) 0 * Os_TE_595151 Os_TE_595151 Chr12 7901957 7901956 - TELIA 141 0.0009 (1/1122) 0 * Os_TE_595152 Os_TE_595150 Chr12 7901653 7901391 - INDITTO 263 0.3684 (1083/2940) 1 Intact * Os_TE_595144 Chr12 7901124 7901125 - ORSgTEMT00900099 250 0.6538 (1945/2975) 0 * * Os_TE_595142 Chr12 7901041 7900810 + ORSgTEMT01601255 232 0.5728 (1086/1896) 1 Intact * Os_TE_595137 Chr12 7900248 7900249 + ORSgTEMT01601983 238 0.6573 (1910/2906) 0 * * Os_TE_595132 Chr12 7898237 7898236 + ORSgTEMT01601122 212 0.6378 (1831/2871) 0 * Os_TE_595131 Os_TE_595131 Chr12 7898236 7898237 + STOWAWAY21_OS 243 0.6455 (1892/2931) 0 * Os_TE_595132 Os_TE_595129 Chr12 7898089 7898088 + RIREX_LTR 8828 0.0213 (60/2816) 0 * * Os_TE_595128 Chr12 7897934 7897732 - TOURIST-XI 219 0.4234 (1066/2518) 1 Intact * Os_TE_595127 Chr12 7896969 7896968 - F524 291 0.6693 (1860/2779) 0 * * Os_TE_595125 Chr12 7896786 7896444 - CASTAWAY 364 0.3582 (1053/2940) 1 Intact Os_TE_595123 Os_TE_595123 Chr12 7896440 7896785 - ORSgTEMT00600484 344 0.3913 (1093/2793) 1 Intact Os_TE_595125 Os_TE_595121 Chr12 7896142 7896141 + COPIA2-LTR_OS 6433 0.0003 (1/2940) 0 * * Os_TE_595119 Chr12 7895785 7895786 - TOS1 295 0.0009 (1/1094) 0 * * Os_TE_595108 Chr12 7891984 7891985 - MPING 430 0.0007 (2/2913) 0 * Os_TE_595107 Os_TE_595107 Chr12 7891982 7891981 + MPING 430 0.0009 (2/2148) 0 * Os_TE_595108 Os_TE_595105 Chr12 7891183 7890551 - GYPSY1-LTR_OS 8900 0.3680 (1082/2940) 1 Solo_LTR Os_TE_595103 Os_TE_595103 Chr12 7890552 7891183 + GYPSY1-LTR_OS 8900 0.3721 (1088/2924) 1 Solo_LTR Os_TE_595105 Os_TE_595092 Chr12 7889999 7889998 - RETRO1_LTR 8314 0.0004 (1/2509) 0 * * Os_TE_595088 Chr12 7889608 7889609 + MDR2 6967 0.1642 (458/2789) 0 * Os_TE_595087 Os_TE_595087 Chr12 7889600 7889599 - MDR2 6967 0.1261 (342/2713) 0 * Os_TE_595088 Os_TE_595076 Chr12 7886345 7886346 - TRUNCATOR 2918 0.0010 (1/1024) 0 * * Os_TE_595070 Chr12 7884854 7884855 - SZ-43LTR 4039 0.0012 (3/2415) 0 * * Os_TE_595068 Chr12 7884790 7884791 - RETROSAT3_LTR 11537 0.1687 (495/2935) 0 * Os_TE_595067 Os_TE_595067 Chr12 7884786 7884785 + RETROSAT2LTRA 3112 0.1647 (467/2836) 0 * Os_TE_595068 Os_TE_595050 Chr12 7883286 7883287 - ORSgTEMT02400246 177 0.0005 (1/1959) 0 * * Os_TE_595049 Chr12 7882984 7882983 - ORSgTEMT01602082 215 0.6719 (1986/2956) 0 * * Os_TE_595048 Chr12 7882982 7882983 - TREP215 239 0.6615 (1903/2877) 0 * Os_TE_595047 Os_TE_595047 Chr12 7882974 7882973 - COPIA2-LTR_OS 6433 0.0010 (1/1020) 0 * Os_TE_595048 Os_TE_595045 Chr12 7882878 7882877 + NDNA1TNA_OS 334 0.0796 (81/1018) 0 * * Os_TE_595043 Chr12 7882169 7882168 + SINE03_OS 360 0.6779 (1970/2906) 0 * * Os_TE_595040 Chr12 7882000 7881853 - ORSgTEMT00501811 148 0.5063 (1005/1985) 1 Intact Os_TE_595039 Os_TE_595039 Chr12 7881852 7881997 - ORSgTEMT00500974 146 0.3321 (981/2954) 1 Intact Os_TE_595040 Os_TE_595026 Chr12 7873236 7865552 + COPIA1-LTR_OS 9292 0.3584 (1063/2966) 1 Intact * Os_TE_595018 Chr12 7864800 7854752 - TRUNCATOR 2918 0.3515 (1045/2973) 1 Intact Os_TE_595005 Os_TE_595005 Chr12 7854752 7864795 + TRUNCATOR 2918 0.3572 (1064/2979) 1 Intact Os_TE_595018 Os_TE_595003 Chr12 7854013 7854012 + MuDR-N6_OS 836 0.0030 (9/2987) 0 * * Os_TE_594995 Chr12 7849705 7849704 - GYPSY-B_LTR 7068 0.0027 (8/2950) 0 * * Os_TE_594956 Chr12 7834262 7834261 + SPMLIKE 10989 0.0023 (7/2998) 0 * * Os_TE_594941 Chr12 7828942 7828943 - ORSgTEMT02400179 221 0.0003 (1/2968) 0 * Os_TE_594940 Os_TE_594940 Chr12 7828941 7828940 - TYPEM 227 0.0009 (2/2327) 0 * Os_TE_594941 Os_TE_594933 Chr12 7827081 7827082 + ORSiCMCM00100014 10855 0.0018 (2/1103) 0 * Os_TE_594932 Os_TE_594932 Chr12 7827077 7827076 - ORSiCMCM00100014 10855 0.0008 (2/2530) 0 * Os_TE_594933 Os_TE_594931 Chr12 7826945 7826691 - ORSgTEMT00901345 248 0.3633 (1072/2951) 1 Intact Os_TE_594926 Os_TE_594926 Chr12 7826689 7826945 + ORSgTEMT00901202 248 0.3617 (1079/2983) 1 Intact Os_TE_594931 Os_TE_594914 Chr12 7820078 7820079 + HARB-1_OS 5166 0.0003 (1/2986) 0 * Os_TE_594913 Os_TE_594913 Chr12 7820077 7820076 - HARB-1_OS 5166 0.0003 (1/2986) 0 * Os_TE_594914 Os_TE_594909 Chr12 7819621 7819231 + TYPEU4 402 0.3645 (1075/2949) 1 Intact Os_TE_594907 Os_TE_594907 Chr12 7819231 7819621 - TYPEU1 380 0.3594 (1070/2977) 1 Intact Os_TE_594909 Os_TE_594897 Chr12 7817427 7817426 - SZ-19LTR 1513 0.6940 (1916/2761) 0 * * Os_TE_594895 Chr12 7817343 7817342 - TRUNCATOR2_LTR 2904 0.0036 (10/2788) 0 * * Os_TE_594894 Chr12 7817217 7817216 + EnSpm-N1_OS 4256 0.0179 (52/2904) 0 * * Os_TE_594890 Chr12 7817038 7817037 + COPIA2-LTR_OS 6433 0.6599 (1938/2937) 0 * * Os_TE_594889 Chr12 7816829 7816830 - F569 228 0.0006 (1/1799) 0 * * Os_TE_594887 Chr12 7816186 7816187 + AMYLTP 383 0.0428 (45/1052) 0 * Os_TE_594886 Os_TE_594886 Chr12 7816178 7816177 - AMYLTP 383 0.0383 (46/1201) 0 * Os_TE_594887 Os_TE_594880 Chr12 7815404 7815405 - TRUNCATOR2_LTR 2904 0.0027 (8/2960) 0 * Os_TE_594879 Os_TE_594879 Chr12 7815400 7815399 + ORSiCMCM00100019 2717 0.0027 (8/2950) 0 * Os_TE_594880 Os_TE_594878 Chr12 7815081 7815082 - NDNA1TNA_OS 334 0.0361 (82/2271) 0 * Os_TE_594877 Os_TE_594877 Chr12 7815079 7815078 + NDNA1TNA_OS 334 0.0277 (82/2965) 0 * Os_TE_594878 Os_TE_594874 Chr12 7814914 7815050 - ORSgTETNOOT00544 147 0.3581 (1056/2949) 1 Intact * Os_TE_594865 Chr12 7813008 7813007 + SPMLIKE 10989 0.0007 (2/2969) 0 * * Os_TE_594864 Chr12 7812871 7812870 - ORSgTETNOOT01607 258 0.0024 (7/2932) 0 * * Os_TE_594863 Chr12 7812619 7810123 - SEVERIN-2 1952 0.3284 (883/2689) 1 Intact * Os_TE_594858 Chr12 7808728 7808729 - RIRE2_LTR 11306 0.1874 (481/2567) 0 * * Os_TE_594844 Chr12 7806478 7806479 + ORSgTETNOOT01686 252 0.0010 (3/2932) 0 * Os_TE_594843 Os_TE_594843 Chr12 7806474 7806473 + ORSgTETNOOT01834 251 0.0021 (6/2817) 0 * Os_TE_594844 Os_TE_594842 Chr12 7806258 7804693 - STOWAWAY14_OS 258 0.3615 (1066/2949) 1 Intact * Os_TE_594837 Chr12 7804606 7804239 - ORSgTEMT04800063 360 0.3628 (1071/2952) 1 Intact * Os_TE_594823 Chr12 7802000 7801999 - RIREX_LTR 8828 0.0017 (5/2992) 0 * * Os_TE_594814 Chr12 7797058 7797057 + ENSPM6_OS 9815 0.1675 (479/2860) 0 * * Os_TE_594813 Chr12 7797051 7794969 + SEVERIN-2 1952 0.1795 (442/2462) 1 Intact * Os_TE_594811 Chr12 7794973 7794974 - ENSPM6_OS 9815 0.4573 (476/1041) 0 * * Os_TE_594769 Chr12 7776420 7776421 + OSTE33 1012 0.0003 (1/2878) 0 * * Os_TE_594744 Chr12 7761608 7755938 - RIREX_LTR 8828 0.5709 (620/1086) 1 Intact * Os_TE_594743 Chr12 7755452 7755453 + DASIA-2 1198 0.0003 (1/2952) 0 * Os_TE_594742 Os_TE_594742 Chr12 7755444 7755443 + DASIA-2 1198 0.0003 (1/2955) 0 * Os_TE_594743 Os_TE_594732 Chr12 7753155 7753156 + COPIA2-LTR_OS 6433 0.0009 (1/1091) 0 * * Os_TE_594719 Chr12 7749570 7749365 + ORSgTEMT01601122 212 0.2080 (542/2606) 1 Intact * Os_TE_594713 Chr12 7748201 7747892 + TYPEH 309 0.2848 (571/2005) 1 Intact Os_TE_594711 Os_TE_594711 Chr12 7747892 7748200 - TYPEH 309 0.2344 (613/2615) 1 Intact Os_TE_594713 Os_TE_594702 Chr12 7745152 7745153 + RIRE5-LTR_OS 6427 0.7637 (2272/2975) 0 * Os_TE_594701 Os_TE_594701 Chr12 7745148 7745147 - SZ-9LTR 965 0.7658 (2295/2997) 0 * Os_TE_594702 Os_TE_594697 Chr12 7739484 7739483 - ORSgTEMT01900024 348 0.7622 (2247/2948) 0 * Os_TE_594696 Os_TE_594696 Chr12 7739480 7739481 + ORSgTEMT01900027 302 0.7586 (2219/2925) 0 * Os_TE_594697 Os_TE_594689 Chr12 7731169 7731170 - ORSgTEMT02400179 221 0.0003 (1/2956) 0 * Os_TE_594688 Os_TE_594688 Chr12 7731168 7731167 - TYPEM 227 0.0003 (1/2962) 0 * Os_TE_594689 Os_TE_594685 Chr12 7729725 7729726 - ORSgTERT00201216 11284 0.0003 (1/2897) 0 * Os_TE_594684 Os_TE_594684 Chr12 7729721 7729720 - RIRE2_LTR 11306 0.0003 (1/2893) 0 * Os_TE_594685 Os_TE_594671 Chr12 7725948 7725949 - ORSgTERT00201216 11284 0.0007 (2/2981) 0 * * Os_TE_594636 Chr12 7708730 7708729 + MuDR2_OS 6770 0.0250 (74/2959) 0 * * Os_TE_594621 Chr12 7706266 7706265 - TRUNCATOR 2918 0.0014 (4/2918) 0 * * Os_TE_594618 Chr12 7705503 7705504 - ORSgTETN00200001 10994 0.0276 (81/2940) 0 * * Os_TE_594604 Chr12 7703426 7703427 - TRUNCATOR2_LTR 2904 0.0031 (9/2899) 0 * * Os_TE_594594 Chr12 7700023 7700022 + STOWAWAY51_OS 246 0.0003 (1/2970) 0 * Os_TE_594593 Os_TE_594593 Chr12 7700017 7700018 + ORSgTEMT01601591 242 0.0003 (1/2981) 0 * Os_TE_594594 Os_TE_594591 Chr12 7697838 7697839 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_594590 Os_TE_594590 Chr12 7697834 7697833 - COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_594591 Os_TE_594586 Chr12 7695468 7695467 + SC-8_LTR 4951 0.0003 (1/2991) 0 * * Os_TE_594582 Chr12 7693561 7693560 - SC-3_LTR 5748 0.0003 (1/2981) 0 * * Os_TE_594573 Chr12 7690934 7690935 - SC-3_LTR 5748 0.0003 (1/2981) 0 * Os_TE_594572 Os_TE_594572 Chr12 7690930 7690929 + ORSiTERTOOT00296 5553 0.0003 (1/2980) 0 * Os_TE_594573 Os_TE_594551 Chr12 7679650 7679651 - STOWAWAY44_OS 240 0.0003 (1/2974) 0 * * Os_TE_594534 Chr12 7674016 7674017 + RETROSAT2LTR 12796 0.0165 (47/2849) 0 * Os_TE_594533 Os_TE_594533 Chr12 7674014 7674013 - RETROSAT2LTR 12796 0.0237 (69/2909) 0 * Os_TE_594534 Os_TE_594501 Chr12 7665673 7665672 - STOWAWAY51_OS 246 0.0003 (1/2983) 0 * * Os_TE_594499 Chr12 7665502 7665501 + ORSgTEMT01400039 200 0.0003 (1/2994) 0 * * Os_TE_594496 Chr12 7663420 7663421 + SZ-40LTR 2465 0.0190 (57/2994) 0 * Os_TE_594495 Os_TE_594495 Chr12 7663416 7663415 - GYPSY-A_LTR 8951 0.0214 (64/2996) 0 * Os_TE_594496 Os_TE_594487 Chr12 7654125 7654565 + RIREX_LTR 8828 0.2814 (823/2925) 1 Solo_LTR * Os_TE_594486 Chr12 7653854 7653855 - MPING 430 0.0058 (17/2949) 0 * Os_TE_594485 Os_TE_594485 Chr12 7653852 7653851 + MPING 430 0.0060 (18/2991) 0 * Os_TE_594486 Os_TE_594477 Chr12 7649696 7649697 - ORSiTERT00200154 9386 0.0017 (5/2909) 0 * * Os_TE_594449 Chr12 7641447 7641448 + TWIFBIG 3567 0.0010 (3/2959) 0 * Os_TE_594448 Os_TE_594448 Chr12 7641440 7641439 - ORSiTETNOOT00216 3569 0.0003 (1/2955) 0 * Os_TE_594449 Os_TE_594430 Chr12 7629337 7629338 - RIREX_LTR 8828 0.0264 (79/2994) 0 * Os_TE_594429 Os_TE_594429 Chr12 7629333 7629332 + RIREX_LTR 8828 0.0264 (79/2991) 0 * Os_TE_594430 Os_TE_594425 Chr12 7627556 7627555 - GLUTEL1LIKE 273 0.0020 (6/2983) 0 * * Os_TE_594423 Chr12 7627009 7627008 + RETROSAT2LTRA 3112 0.0033 (10/2988) 0 * * Os_TE_594411 Chr12 7622920 7622921 - RIREX_LTR 8828 0.0236 (70/2965) 0 * * Os_TE_594404 Chr12 7618858 7618859 - KIDDOC 275 0.6990 (2032/2907) 0 * * Os_TE_594392 Chr12 7611353 7611354 + COPIA2-LTR_OS 6433 0.0649 (193/2974) 0 * Os_TE_594391 Os_TE_594391 Chr12 7611349 7611348 - COPIA2-LTR_OS 6433 0.0672 (200/2978) 0 * Os_TE_594392 Os_TE_594371 Chr12 7602683 7602682 - ORSgTEMT01600747 238 0.0267 (79/2959) 0 * Os_TE_594370 Os_TE_594370 Chr12 7602680 7602681 + ORSgTEMT01600486 232 0.0267 (79/2960) 0 * Os_TE_594371 Os_TE_594368 Chr12 7601604 7601605 - RIREX_LTR 8828 0.0003 (1/2971) 0 * Os_TE_594367 Os_TE_594367 Chr12 7601600 7601599 + RIREX_LTR 8828 0.0003 (1/2963) 0 * Os_TE_594368 Os_TE_594359 Chr12 7599233 7599234 + SPMLIKE 10989 0.0003 (1/2969) 0 * * Os_TE_594357 Chr12 7598613 7598612 + ORSgTEMT01701104 154 0.0260 (77/2965) 0 * Os_TE_594356 Os_TE_594356 Chr12 7598605 7598606 - ORSgTEMT01601493 303 0.0256 (76/2967) 0 * Os_TE_594357 Os_TE_594340 Chr12 7583499 7583500 - ENSPM4_OS 11610 0.0003 (1/2921) 0 * * Os_TE_594319 Chr12 7571512 7571513 - TRUNCATOR2_LTR 2904 0.0003 (1/2999) 0 * * Os_TE_594308 Chr12 7568337 7568338 + ORSgTEMT00300093 396 0.0010 (3/2866) 0 * * Os_TE_594306 Chr12 7567331 7567330 - ORSgTEMT01602413 239 0.0748 (83/1109) 0 * * Os_TE_594265 Chr12 7552597 7552598 - SC-3_LTR 5748 0.0003 (1/2981) 0 * Os_TE_594264 Os_TE_594264 Chr12 7552593 7552592 + ORSiTERTOOT00296 5553 0.0003 (1/2987) 0 * Os_TE_594265 Os_TE_594257 Chr12 7546435 7546436 - RIREX_LTR 8828 0.0007 (2/2895) 0 * Os_TE_594256 Os_TE_594256 Chr12 7546431 7546430 + RIREX_LTR 8828 0.0007 (2/2872) 0 * Os_TE_594257 Os_TE_594238 Chr12 7540304 7540305 - SZ-44LTR 1408 0.0023 (7/2997) 0 * Os_TE_594237 Os_TE_594237 Chr12 7540300 7540299 + SZ-44LTR 1408 0.0023 (7/2994) 0 * Os_TE_594238 Os_TE_594215 Chr12 7523412 7523411 - SC-8_LTR 4951 0.0010 (3/2936) 0 * * Os_TE_594200 Chr12 7518175 7518174 + ORSiTERTOOT00034 791 0.4388 (1277/2910) 0 * * Os_TE_594183 Chr12 7514788 7514789 + COPIA2-LTR_OS 6433 0.0007 (2/2964) 0 * Os_TE_594182 Os_TE_594182 Chr12 7514784 7514783 - COPIA2-LTR_OS 6433 0.0007 (2/2960) 0 * Os_TE_594183 Os_TE_594181 Chr12 7514360 7514361 - COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * * Os_TE_594170 Chr12 7509720 7509721 - RIREX_LTR 8828 0.0013 (4/2997) 0 * * Os_TE_594160 Chr12 7504147 7504148 + MERMITEA 1710 0.0105 (31/2946) 0 * * Os_TE_594134 Chr12 7493771 7493770 - INDITTO 263 0.0010 (3/2977) 0 * * Os_TE_594125 Chr12 7491820 7491821 + COPIA2-LTR_OS 6433 0.0007 (2/2989) 0 * * Os_TE_594087 Chr12 7471960 7471959 - ORSgTEMT02000041 194 0.0028 (5/1816) 0 * * Os_TE_594083 Chr12 7467814 7467813 + DASIA-2 1198 0.0007 (2/2981) 0 * * Os_TE_594073 Chr12 7464503 7464502 + STOWAWAY51_OS 246 0.0034 (10/2936) 0 * * Os_TE_594071 Chr12 7463817 7463818 - AMYLTP 383 0.0173 (51/2941) 0 * Os_TE_594070 Os_TE_594070 Chr12 7463809 7463808 + AMYLTP 383 0.0174 (51/2931) 0 * Os_TE_594071 Os_TE_594058 Chr12 7461535 7461534 - ORSgTEMT01700794 153 0.6997 (2092/2990) 0 * Os_TE_594057 Os_TE_594057 Chr12 7461532 7461533 + ORSgTEMT01700789 143 0.6993 (2088/2986) 0 * Os_TE_594058 Os_TE_594022 Chr12 7447634 7447635 + RIRE2_LTR 11306 0.3321 (994/2993) 0 * Os_TE_594021 Os_TE_594021 Chr12 7447630 7447629 - RIRE2_LTR 11306 0.3238 (965/2980) 0 * Os_TE_594022 Os_TE_593997 Chr12 7434701 7434702 - RETROSAT2LTR 12796 0.0806 (239/2967) 0 * * Os_TE_593974 Chr12 7424352 7424353 - MPING 430 0.0003 (1/2982) 0 * Os_TE_593973 Os_TE_593973 Chr12 7424350 7424349 + MPING 430 0.0003 (1/2987) 0 * Os_TE_593974 Os_TE_593959 Chr12 7417202 7417203 - RIRE2_LTR 11306 0.0834 (250/2996) 0 * Os_TE_593958 Os_TE_593958 Chr12 7417198 7417197 - ORSgTERT00201216 11284 0.0841 (252/2997) 0 * Os_TE_593959 Os_TE_593956 Chr12 7415998 7415999 + MuDR2_OS 6770 0.0007 (2/2987) 0 * * Os_TE_593950 Chr12 7415040 7415041 - ORSiTETNOOT00200 3563 0.0003 (1/2925) 0 * * Os_TE_593926 Chr12 7405425 7405424 - ORSgTEMT02400179 221 0.0258 (77/2982) 0 * * Os_TE_593924 Chr12 7405138 7405137 + RETRO2_LTR 12874 0.0003 (1/2986) 0 * * Os_TE_593921 Chr12 7402942 7402943 - ORSgTERT00201216 11284 0.0008 (2/2484) 0 * * Os_TE_593885 Chr12 7384465 7384464 - MuDR3_OS 8604 0.0020 (6/2974) 0 * * Os_TE_593811 Chr12 7359203 7359202 - TRUNCATOR 2918 0.0702 (209/2978) 0 * * Os_TE_593799 Chr12 7357725 7357724 + RETROSAT4_LTR 13504 0.0017 (5/2971) 0 * * Os_TE_593773 Chr12 7344653 7344654 - ORSiTERTOOT00382 5890 0.0003 (1/2994) 0 * Os_TE_593772 Os_TE_593772 Chr12 7344649 7344648 + ORSiTERTOOT00382 5890 0.0003 (1/2997) 0 * Os_TE_593773 Os_TE_593754 Chr12 7338364 7338365 - MPING 430 0.0240 (14/583) 0 * * Os_TE_593751 Chr12 7338252 7338253 - OLO24 345 0.0041 (5/1208) 0 * * Os_TE_593750 Chr12 7338117 7338116 + ORSgTEMT05200253 282 0.0012 (2/1607) -1 * * Os_TE_593733 Chr12 7329121 7329120 + ORSiTERT00200154 9386 0.0014 (4/2950) 0 * * Os_TE_593711 Chr12 7317109 7317110 + ORSiTERTOOT00296 5553 0.0003 (1/2989) 0 * Os_TE_593710 Os_TE_593710 Chr12 7317105 7317104 - SC-3_LTR 5748 0.0003 (1/2991) 0 * Os_TE_593711 Os_TE_593677 Chr12 7301719 7301720 - ORSiTETNOOT00134 607 0.0150 (45/2991) 0 * Os_TE_593676 Os_TE_593676 Chr12 7301712 7301711 + TWIF 586 0.0117 (35/2985) 0 * Os_TE_593677 Os_TE_593664 Chr12 7300204 7300205 - AMYLTP 383 0.0042 (12/2855) 0 * Os_TE_593663 Os_TE_593663 Chr12 7300196 7300195 + AMYLTP 383 0.0081 (23/2830) 0 * Os_TE_593664 Os_TE_593662 Chr12 7300181 7300182 + COPIA2-LTR_OS 6433 0.0007 (2/2858) 0 * Os_TE_593661 Os_TE_593661 Chr12 7300177 7300176 - COPIA2-LTR_OS 6433 0.0007 (2/2850) 0 * Os_TE_593662 Os_TE_593652 Chr12 7299147 7299148 - ORSgTEMT01400012 212 0.0003 (1/2955) 0 * * Os_TE_593643 Chr12 7298232 7298233 + COPIA2-LTR_OS 6433 0.0007 (2/2986) 0 * Os_TE_593642 Os_TE_593642 Chr12 7298228 7298227 - COPIA2-LTR_OS 6433 0.0007 (2/2985) 0 * Os_TE_593643 Os_TE_593633 Chr12 7292640 7292641 + RETRO1_LTR 8314 0.0729 (201/2759) 0 * Os_TE_593632 Os_TE_593632 Chr12 7292636 7292635 - RETRO1_LTR 8314 0.0703 (193/2746) 0 * Os_TE_593633 Os_TE_593570 Chr12 7269170 7269171 - RETROSAT2LTR 12796 0.0069 (5/721) 0 * * Os_TE_593568 Chr12 7269142 7269141 + RETROSAT2LTRA 3112 0.0019 (3/1620) 0 * * Os_TE_593526 Chr12 7248816 7248817 + TRUNCATOR 2918 0.0004 (1/2825) 0 * Os_TE_593525 Os_TE_593525 Chr12 7248812 7248811 + TRUNCATOR 2918 0.0004 (1/2840) 0 * Os_TE_593526 Os_TE_593519 Chr12 7247956 7247957 - ORSiTERTOOT00273 5419 0.0007 (2/2941) 0 * * Os_TE_593514 Chr12 7242690 7242691 - COPIA2-LTR_OS 6433 0.0067 (20/2988) 0 * * Os_TE_593498 Chr12 7238723 7237502 + OSTE1 801 0.5503 (1553/2822) 1 Intact * Os_TE_593489 Chr12 7237349 7237348 + ORSgTEMT01701388 146 0.0024 (7/2888) 0 * * Os_TE_593431 Chr12 7210637 7210638 - COPI2_LTR 4733 0.0003 (1/2984) 0 * Os_TE_593430 Os_TE_593430 Chr12 7210633 7210632 + COPI2_LTR 4733 0.0003 (1/2985) 0 * Os_TE_593431 Os_TE_593422 Chr12 7209101 7209102 + RIREX_LTR 8828 0.0075 (22/2953) 0 * Os_TE_593421 Os_TE_593421 Chr12 7209097 7209096 - RIREX_LTR 8828 0.0071 (21/2955) 0 * Os_TE_593422 Os_TE_593419 Chr12 7208814 7208815 - ORSgTETN00200001 10994 0.0142 (42/2958) 0 * * Os_TE_593417 Chr12 7208765 7208766 - COPI2_LTR 4733 0.0003 (1/2944) 0 * * Os_TE_593415 Chr12 7208634 7208635 - ORSgTETN00200001 10994 0.0559 (165/2951) 0 * Os_TE_593414 Os_TE_593414 Chr12 7208632 7208631 + SPMLIKE 10989 0.0672 (200/2977) 0 * Os_TE_593415 Os_TE_593391 Chr12 7204878 7204877 + TRUNCATOR 2918 0.1054 (315/2988) 0 * * Os_TE_593384 Chr12 7201734 7201735 - SZ-22_LTR 4403 0.0003 (1/2997) 0 * * Os_TE_593380 Chr12 7200706 7200707 - RETRO2_LTR 12874 0.0003 (1/2995) 0 * * Os_TE_593378 Chr12 7200617 7200616 - TRUNCATOR 2918 0.0017 (5/2997) 0 * * Os_TE_593369 Chr12 7193999 7194000 + RIREX_LTR 8828 0.0010 (3/2988) 0 * Os_TE_593368 Os_TE_593368 Chr12 7193995 7193994 - RIREX_LTR 8828 0.0010 (3/2987) 0 * Os_TE_593369 Os_TE_593363 Chr12 7192315 7192316 - ORSgTETN00200001 10994 0.0108 (32/2958) 0 * * Os_TE_593353 Chr12 7189254 7189255 + SZ-62LTR 3649 0.0007 (2/2992) 0 * Os_TE_593352 Os_TE_593352 Chr12 7189250 7189249 - SZ-62LTR 3649 0.0007 (2/2990) 0 * Os_TE_593353 Os_TE_593272 Chr12 7151802 7151801 + ORSgTEMT01601122 212 0.0035 (5/1422) 0 * * Os_TE_593263 Chr12 7147489 7147254 + ORSgTEMT01601122 212 0.0857 (255/2974) 1 Intact Os_TE_593262 Os_TE_593262 Chr12 7147254 7147461 + ORSgTEMT01601122 212 0.0843 (251/2979) 1 Intact Os_TE_593263 Os_TE_593261 Chr12 7146863 7146862 - DNAUN1_OS 408 0.0007 (2/2871) 0 * * Os_TE_593253 Chr12 7144979 7145633 + ORSiTERTOOT00295 975 0.1719 (276/1606) 1 Intact * Os_TE_593251 Chr12 7144265 7144264 - ORSgTEMT01600201 236 0.0003 (1/2920) 0 * * Os_TE_593228 Chr12 7135879 7135878 - COPI2_LTR 4733 0.0004 (1/2289) 0 * * Os_TE_593226 Chr12 7133340 7133341 - NDNA1TNA_OS 334 0.0003 (1/2999) 0 * * Os_TE_593224 Chr12 7133218 7133219 + INDITTO 263 0.0110 (33/2998) 0 * * Os_TE_593221 Chr12 7133148 7132886 + ORSgTETNOOT02406 265 0.0955 (286/2996) 1 Intact Os_TE_593220 Os_TE_593220 Chr12 7132886 7133148 - ORSgTETNOOT00762 266 0.0968 (290/2997) 1 Intact Os_TE_593221 Os_TE_593219 Chr12 7132688 7132687 - STOWAWAY51_OS 246 0.0003 (1/2994) 0 * Os_TE_593218 Os_TE_593218 Chr12 7132682 7132683 + STOWAWAY51_OS 246 0.0003 (1/2994) 0 * Os_TE_593219 Os_TE_593214 Chr12 7129635 7129284 + MUDRN5_OS 374 0.1048 (268/2557) 1 Intact Os_TE_593212 Os_TE_593212 Chr12 7129274 7129635 + ORSgTEMT00700017 386 0.0843 (251/2979) 1 Intact Os_TE_593214 Os_TE_593195 Chr12 7123686 7123547 + ORSgTEMT00501356 145 0.1030 (273/2651) 1 Intact Os_TE_593191 Os_TE_593191 Chr12 7123439 7123681 - ORSgTETNOOT00544 147 0.0953 (268/2811) 1 Intact Os_TE_593195 Os_TE_593174 Chr12 7121376 7121377 + MPING 430 0.0004 (1/2835) 0 * * Os_TE_593167 Chr12 7117309 7117091 - TYPEM 227 0.0894 (265/2964) 1 Intact * Os_TE_593163 Chr12 7113777 7113542 + ORSgTEMT01600300 235 0.0908 (267/2941) 1 Intact Os_TE_593159 Os_TE_593159 Chr12 7113539 7113777 - TREP215 239 0.0880 (263/2987) 1 Intact Os_TE_593163 Os_TE_593156 Chr12 7111256 7111255 + OSTE15 1168 0.6768 (2000/2955) 0 * * Os_TE_593155 Chr12 7110874 7110875 + COPIA2-LTR_OS 6433 0.0007 (2/2996) 0 * Os_TE_593154 Os_TE_593154 Chr12 7110870 7110869 - COPIA2-LTR_OS 6433 0.0007 (2/2996) 0 * Os_TE_593155 Os_TE_593150 Chr12 7110431 7110432 - SZ-62LTR 3649 0.0013 (4/2995) 0 * Os_TE_593149 Os_TE_593149 Chr12 7110427 7110426 + SZ-62LTR 3649 0.0013 (4/2991) 0 * Os_TE_593150 Os_TE_593147 Chr12 7109658 7109659 + SZ-14LTR 1193 0.6822 (2022/2964) 0 * * Os_TE_593144 Chr12 7108893 7108892 + OSTE20 496 0.0003 (1/2947) 0 * * Os_TE_593142 Chr12 7108651 7108889 - ORSgTEMT01601432 239 0.3214 (942/2931) 1 Intact * Os_TE_593134 Chr12 7102996 7102997 + RIREX_LTR 8828 0.1115 (332/2978) 0 * Os_TE_593133 Os_TE_593133 Chr12 7102992 7102991 - RIREX_LTR 8828 0.1133 (337/2975) 0 * Os_TE_593134 Os_TE_593130 Chr12 7101587 7101588 + TNR2A 152 0.0003 (1/2953) 0 * * Os_TE_593126 Chr12 7099869 7099870 + ORSiTERTOOT00296 5553 0.0003 (1/2994) 0 * Os_TE_593125 Os_TE_593125 Chr12 7099865 7099864 - SC-3_LTR 5748 0.0003 (1/2995) 0 * Os_TE_593126 Os_TE_593107 Chr12 7092471 7092472 - MDR2 6967 0.0050 (11/2208) 0 * * Os_TE_593066 Chr12 7084318 7084317 + RETRO1_LTR 8314 0.0005 (1/2148) 0 * * Os_TE_593057 Chr12 7082302 7070483 + ENSPM4_OS 11610 0.1014 (231/2279) 1 Intact Os_TE_593056 Os_TE_593056 Chr12 7070482 7082301 - ENSPM4_OS 11610 0.1024 (233/2275) 1 Intact Os_TE_593057 Os_TE_593048 Chr12 7066138 7066139 - ORSgTETN00200001 10994 0.0031 (7/2291) 0 * Os_TE_593047 Os_TE_593047 Chr12 7066136 7066135 + SPMLIKE 10989 0.0044 (10/2284) 0 * Os_TE_593048 Os_TE_593043 Chr12 7065489 7065490 - TRUNCATOR2_LTR 2904 0.0013 (3/2276) 0 * Os_TE_593042 Os_TE_593042 Chr12 7065485 7065484 + ORSiTERTOOT00028 8600 0.0013 (3/2275) 0 * Os_TE_593043 Os_TE_593024 Chr12 7059420 7059421 + RIRE3_LTR 12054 0.0044 (10/2291) 0 * Os_TE_593023 Os_TE_593023 Chr12 7059416 7059415 - RIRE3_LTR 12054 0.0048 (11/2293) 0 * Os_TE_593024 Os_TE_592972 Chr12 7035778 7035777 - TRSA_OS 353 0.0008 (1/1262) 0 * * Os_TE_592964 Chr12 7034547 7034548 - RIREX_LTR 8828 0.0060 (11/1843) 0 * Os_TE_592963 Os_TE_592963 Chr12 7034543 7034542 + RIREX_LTR 8828 0.0052 (10/1919) -1 * Os_TE_592964 Os_TE_592925 Chr12 7021238 7021000 + ORSgTEMT01602181 239 0.7490 (2208/2948) 1 Intact Os_TE_592924 Os_TE_592924 Chr12 7021000 7021238 + ORSgTEMT01602181 239 0.7433 (2172/2922) 1 Intact Os_TE_592925 Os_TE_592921 Chr12 7017354 7017353 + STOWAWAY44_OS 240 0.2566 (767/2989) 0 * * Os_TE_592909 Chr12 7013445 7013444 + ORSgTEMT01602051 240 0.0079 (23/2925) 0 * Os_TE_592908 Os_TE_592908 Chr12 7013442 7013443 - TREP215 239 0.0075 (22/2943) 0 * Os_TE_592909 Os_TE_592906 Chr12 7011737 7011736 - RIREX_LTR 8828 0.0003 (1/2993) 0 * * Os_TE_592905 Chr12 7011671 7011670 - ORSgTEMT01700537 166 0.2448 (724/2957) 0 * * Os_TE_592898 Chr12 7010180 7010179 - ORSgTEMT01601208 238 0.0069 (20/2917) 0 * Os_TE_592897 Os_TE_592897 Chr12 7010177 7010178 - ORSgTEMT01601208 238 0.0058 (17/2910) 0 * Os_TE_592898 Os_TE_592896 Chr12 7009604 6996694 - RETRO1_LTR 8314 0.1106 (220/1989) 1 Intact Os_TE_592885 Os_TE_592885 Chr12 6996694 7009604 + RETRO2A_LTR 12895 0.0852 (233/2735) 1 Intact Os_TE_592896 Os_TE_592878 Chr12 6995948 6995949 - ORSgTETN00200001 10994 0.0877 (256/2918) 0 * Os_TE_592877 Os_TE_592877 Chr12 6995946 6995945 + SPMLIKE 10989 0.1019 (301/2954) 0 * Os_TE_592878 Os_TE_592854 Chr12 6991822 6991823 + TEMPINDAS 4259 0.4685 (1360/2903) 0 * * Os_TE_592833 Chr12 6978340 6979253 - CRATA 4786 0.0983 (219/2227) 1 Intact * Os_TE_592816 Chr12 6975398 6975399 - YIREN 905 0.2576 (750/2912) 0 * Os_TE_592815 Os_TE_592815 Chr12 6975394 6975393 + YIREN 905 0.2589 (753/2908) 0 * Os_TE_592816 Os_TE_592814 Chr12 6975321 6974998 + NDNA1TNA_OS 334 0.7488 (2188/2922) 1 Intact Os_TE_592813 Os_TE_592813 Chr12 6974988 6975322 + ORSgTEMT00100272 356 0.7480 (2164/2893) 1 Intact Os_TE_592814 Os_TE_592811 Chr12 6974943 6974944 - MERMITEA 1710 0.2706 (604/2232) 0 * Os_TE_592810 Os_TE_592810 Chr12 6974935 6974934 + MERMITEA 1710 0.2029 (586/2888) 0 * Os_TE_592811 Os_TE_592807 Chr12 6973905 6973906 - CLOUD 734 0.1875 (506/2698) 0 * Os_TE_592806 Os_TE_592806 Chr12 6973896 6973895 - CLOUD 734 0.2362 (674/2854) 0 * Os_TE_592807 Os_TE_592804 Chr12 6973525 6973526 + SEVERIN-2 1952 0.0033 (7/2109) 0 * * Os_TE_592800 Chr12 6972663 6972662 + TRUNCATOR2_LTR 2904 0.0022 (5/2244) 0 * * Os_TE_592787 Chr12 6967529 6967530 - COPIA2-LTR_OS 6433 0.0004 (1/2233) 0 * * Os_TE_592778 Chr12 6963395 6963396 - ORSgTEMT01700659 156 0.7329 (1048/1430) 0 * * Os_TE_592775 Chr12 6963075 6963076 + ORSgTEMT01400031 216 0.0014 (3/2182) 0 * * Os_TE_592754 Chr12 6950560 6950561 - CASTAWAY 364 0.0024 (7/2902) 0 * * Os_TE_592753 Chr12 6950172 6950171 + ORSgTEMT00501629 149 0.0020 (6/2973) 0 * * Os_TE_592752 Chr12 6950167 6950168 + HELITRON2_OS 15167 0.0020 (6/2954) 0 * * Os_TE_592736 Chr12 6948090 6948091 + TWIF 586 0.0003 (1/2981) 0 * * Os_TE_592735 Chr12 6947633 6945616 + SEVERIN-2 1952 0.3241 (971/2996) 1 Intact * Os_TE_592728 Chr12 6942284 6942283 - ORMOSIA 482 0.0067 (20/2965) 0 * * Os_TE_592727 Chr12 6942265 6942266 - RILN8_OS 5085 0.0386 (115/2980) 0 * * Os_TE_592720 Chr12 6940142 6940143 - COPIA2-LTR_OS 6433 0.0040 (12/2978) 0 * Os_TE_592719 Os_TE_592719 Chr12 6940138 6940137 + COPIA2-LTR_OS 6433 0.0041 (12/2952) 0 * Os_TE_592720 Os_TE_592718 Chr12 6939073 6939072 - TRUNCATOR 2918 0.0007 (2/2994) 0 * Os_TE_592717 Os_TE_592717 Chr12 6939072 6939073 + TRUNCATOR 2918 0.0007 (2/2992) 0 * Os_TE_592718 Os_TE_592692 Chr12 6933538 6933539 - CLOUD-7 495 0.0064 (19/2961) 0 * * Os_TE_592686 Chr12 6931672 6931673 + ORSiTERTOOT00398 5651 0.0070 (13/1857) 0 * * Os_TE_592684 Chr12 6930508 6930507 - COPIA2-LTR_OS 6433 0.0034 (4/1193) 0 * * Os_TE_592680 Chr12 6927680 6927679 - GAIJIN 147 0.0043 (5/1150) 0 * * Os_TE_592676 Chr12 6926373 6926374 + DEBOAT 110 0.0067 (20/2965) 0 * * Os_TE_592670 Chr12 6924147 6924148 - ORSgTETN00200001 10994 0.0270 (76/2810) 0 * Os_TE_592669 Os_TE_592669 Chr12 6924145 6924144 + SPMLIKE 10989 0.0812 (82/1010) 0 * Os_TE_592670 Os_TE_592666 Chr12 6923826 6923609 - ORSgTEMT02400246 177 0.4138 (1148/2774) 1 Intact Os_TE_592663 Os_TE_592663 Chr12 6923604 6923823 - ORSgTEMT02400171 218 0.4091 (1156/2826) 1 Intact Os_TE_592666 Os_TE_592662 Chr12 6922551 6922552 + RIREX_LTR 8828 0.0013 (4/2973) 0 * Os_TE_592661 Os_TE_592661 Chr12 6922547 6922546 - RIREX_LTR 8828 0.0014 (4/2912) 0 * Os_TE_592662 Os_TE_592648 Chr12 6920622 6920621 + TRUNCATOR 2918 0.0542 (162/2989) 0 * Os_TE_592647 Os_TE_592647 Chr12 6920621 6920622 - TRUNCATOR 2918 0.0558 (167/2994) 0 * Os_TE_592648 Os_TE_592642 Chr12 6918627 6918628 - COPI2_LTR 4733 0.0033 (10/2986) 0 * Os_TE_592641 Os_TE_592641 Chr12 6918623 6918622 + COPI2_LTR 4733 0.0033 (10/2986) 0 * Os_TE_592642 Os_TE_592638 Chr12 6916536 6916535 + ORSgTEMT01400012 212 0.0027 (3/1121) 0 * * Os_TE_592632 Chr12 6911981 6912218 + ORSgTEMT01602051 240 0.8514 (945/1110) 1 Intact * Os_TE_592625 Chr12 6909762 6909761 + ORSgTEMT01601591 242 0.0050 (15/2988) 0 * Os_TE_592624 Os_TE_592624 Chr12 6909759 6909760 + ORSgTEMT01601591 242 0.0050 (15/2989) 0 * Os_TE_592625 Os_TE_592622 Chr12 6909520 6909521 - ORSgTEMT00100799 337 0.0074 (22/2986) 0 * * Os_TE_592620 Chr12 6908720 6908721 - ORSgTETN00200001 10994 0.0013 (4/2989) 0 * Os_TE_592619 Os_TE_592619 Chr12 6908718 6908717 + SPMLIKE 10989 0.0013 (4/2991) 0 * Os_TE_592620 Os_TE_592605 Chr12 6896159 6896160 + SPMLIKE 10989 0.0040 (12/2992) 0 * * Os_TE_592603 Chr12 6895890 6895891 - SPMLIKE 10989 0.0020 (6/2979) 0 * Os_TE_592602 Os_TE_592602 Chr12 6895888 6895887 + SPMLIKE 10989 0.0060 (18/2996) 0 * Os_TE_592603 Os_TE_592596 Chr12 6894293 6894048 + STOWAWAY51_OS 246 0.2303 (678/2944) -1 Intact * Os_TE_592593 Chr12 6893331 6893332 - ORSgTETN00200001 10994 0.0276 (81/2939) 0 * Os_TE_592592 Os_TE_592592 Chr12 6893329 6893328 + SPMLIKE 10989 0.0308 (91/2950) 0 * Os_TE_592593 Os_TE_592589 Chr12 6892621 6892622 + AMYLTP 383 0.0003 (1/2972) 0 * * Os_TE_592586 Chr12 6892352 6890950 + CACTA-B 1103 0.3154 (923/2926) 1 Intact Os_TE_592585 Os_TE_592585 Chr12 6890950 6892349 - CACTA-H 1152 0.3235 (960/2968) 1 Intact Os_TE_592586 Os_TE_592583 Chr12 6889463 6889464 - BAJIELTR 4500 0.4728 (1406/2974) 0 * * Os_TE_592550 Chr12 6872096 6872199 + TREP219 104 0.5454 (1633/2994) 1 Intact * Os_TE_592548 Chr12 6870395 6870394 + SEVERIN-2 1952 0.0038 (11/2932) 0 * * Os_TE_592546 Chr12 6869922 6869923 - MuDR4_OS 7610 0.0335 (98/2923) 0 * Os_TE_592545 Os_TE_592545 Chr12 6869915 6869914 - MuDR4_OS 7610 0.0324 (97/2993) 0 * Os_TE_592546 Os_TE_592541 Chr12 6869482 6869483 + ORSgTETNOOT00908 242 0.0061 (18/2975) 0 * * Os_TE_592533 Chr12 6867751 6868735 - TEMPINDAS 4259 0.0604 (180/2978) 1 Intact * Os_TE_592532 Chr12 6867672 6867673 + OLO24 345 0.0014 (4/2940) 0 * Os_TE_592531 Os_TE_592531 Chr12 6867670 6867669 - OLO24 345 0.0014 (4/2962) 0 * Os_TE_592532 Os_TE_592530 Chr12 6867494 6867495 + ORSgTETNOOT00908 242 0.0010 (3/2954) 0 * Os_TE_592529 Os_TE_592529 Chr12 6867481 6867480 + SZ-41LTR 163 0.0057 (17/2969) 0 * Os_TE_592530 Os_TE_592528 Chr12 6867311 6867310 + ENSPM4_OS 11610 0.0081 (24/2980) 0 * * Os_TE_592527 Chr12 6867047 6867048 - RIREX_LTR 8828 0.0288 (86/2988) 0 * Os_TE_592526 Os_TE_592526 Chr12 6867043 6867042 + RIREX_LTR 8828 0.0288 (86/2988) 0 * Os_TE_592527 Os_TE_592524 Chr12 6866452 6866453 + SPMLIKE 10989 0.0471 (139/2954) 0 * Os_TE_592523 Os_TE_592523 Chr12 6866450 6866449 - ORSgTETN00200001 10994 0.0450 (134/2977) 0 * Os_TE_592524 Os_TE_592498 Chr12 6861139 6861138 + ORSiTERTOOT00028 8600 0.0003 (1/2976) 0 * * Os_TE_592496 Chr12 6860500 6860499 + COPIA2-LTR_OS 6433 0.0003 (1/2966) 0 * * Os_TE_592495 Chr12 6860130 6860131 + COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * Os_TE_592494 Os_TE_592494 Chr12 6860126 6860125 - COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_592495 Os_TE_592493 Chr12 6860085 6860086 + COPI2_LTR 4733 0.0003 (1/2958) 0 * * Os_TE_592490 Chr12 6860024 6860023 - AMYLTP 383 0.0003 (1/2967) 0 * * Os_TE_592489 Chr12 6859397 6859398 - RIREX_LTR 8828 0.0003 (1/2987) 0 * Os_TE_592488 Os_TE_592488 Chr12 6859393 6859392 + RIREX_LTR 8828 0.0003 (1/2986) 0 * Os_TE_592489 Os_TE_592441 Chr12 6811099 6811100 + AMYLTP 383 0.1147 (292/2545) 0 * * Os_TE_592420 Chr12 6808643 6808644 - RIRE2_LTR 11306 0.0040 (12/2974) 0 * Os_TE_592419 Os_TE_592419 Chr12 6808639 6808638 - ORSgTERT00201216 11284 0.0047 (14/2970) 0 * Os_TE_592420 Os_TE_592418 Chr12 6808592 6808591 + ORSgTETN00200005 1121 0.0020 (6/2961) 0 * Os_TE_592417 Os_TE_592417 Chr12 6808588 6808589 + CACTA-B 1103 0.0024 (7/2976) 0 * Os_TE_592418 Os_TE_592413 Chr12 6808149 6808150 + ORSiTERTOOT00226 792 0.0003 (1/2943) 0 * * Os_TE_592410 Chr12 6807265 6807266 - ORSgTEMT00600085 364 0.0014 (4/2863) 0 * Os_TE_592409 Os_TE_592409 Chr12 6807263 6807262 + CASTAWAY 364 0.0014 (4/2846) 0 * Os_TE_592410 Os_TE_592402 Chr12 6801621 6801622 + ORSgTETNOOT00908 242 0.0003 (1/2988) 0 * * Os_TE_592394 Chr12 6797299 6797300 - ORSiTETNOOT00216 3569 0.0161 (48/2985) 0 * * Os_TE_592391 Chr12 6796909 6796910 + SETARIA 1402 0.0003 (1/2981) 0 * * Os_TE_592389 Chr12 6796735 6796734 - DNAUN1_OS 408 0.0047 (14/2957) 0 * * Os_TE_592331 Chr12 6779299 6779298 + TRUNCATOR 2918 0.0130 (39/2997) 0 * Os_TE_592330 Os_TE_592330 Chr12 6779298 6779299 - TRUNCATOR 2918 0.0124 (37/2994) 0 * Os_TE_592331 Os_TE_592323 Chr12 6776967 6776966 + TRUNCATOR 2918 0.0003 (1/2982) 0 * Os_TE_592322 Os_TE_592322 Chr12 6776966 6776967 - TRUNCATOR 2918 0.0003 (1/2973) 0 * Os_TE_592323 Os_TE_592294 Chr12 6766654 6766655 + SZ-37_LTR 12001 0.0013 (4/2977) 0 * * Os_TE_592288 Chr12 6763868 6763867 - TRUNCATOR2_LTR 2904 0.0735 (138/1877) 0 * * Os_TE_592286 Chr12 6763055 6763054 + TNR2A 152 0.3635 (820/2256) 0 * * Os_TE_592275 Chr12 6757002 6757001 + SEVERIN-2 1952 0.0013 (4/2981) 0 * * Os_TE_592269 Chr12 6753951 6753950 + CACTA-B 1103 0.0041 (12/2945) 0 * Os_TE_592268 Os_TE_592268 Chr12 6753947 6753948 - CACTA-H 1152 0.0037 (11/2961) 0 * Os_TE_592269 Os_TE_592265 Chr12 6753217 6753218 - COPI2_LTR 4733 0.2573 (767/2981) 0 * Os_TE_592264 Os_TE_592264 Chr12 6753213 6753212 + COPI2_LTR 4733 0.2491 (738/2963) 0 * Os_TE_592265 Os_TE_592256 Chr12 6748807 6748806 + ORSgTEMT01602181 239 0.0013 (4/2994) 0 * Os_TE_592255 Os_TE_592255 Chr12 6748804 6748805 + ORSgTEMT01602181 239 0.0013 (4/2994) 0 * Os_TE_592256 Os_TE_592246 Chr12 6746823 6746822 - RETRO1_LTR 8314 0.0055 (14/2563) -1 * * Os_TE_592240 Chr12 6745724 6744282 - DS-RICE2N 613 0.3246 (962/2964) 1 Intact Os_TE_592239 Os_TE_592239 Chr12 6744282 6745724 + DS-RICE4N 715 0.4097 (844/2060) 1 Intact Os_TE_592240 Os_TE_592238 Chr12 6744256 6742838 + OSTE33 1012 0.4033 (916/2271) 1 Intact Os_TE_592235 Os_TE_592235 Chr12 6742838 6744256 + OSTE33 1012 0.3250 (964/2966) 1 Intact Os_TE_592238 Os_TE_592231 Chr12 6741516 6741517 + RIREX_LTR 8828 0.0048 (14/2935) 0 * Os_TE_592230 Os_TE_592230 Chr12 6741512 6741511 - RIREX_LTR 8828 0.0051 (15/2938) 0 * Os_TE_592231 Os_TE_592228 Chr12 6741225 6741226 - CRATA 4786 0.0054 (16/2966) 0 * * Os_TE_592227 Chr12 6740904 6740905 - COPIA2-LTR_OS 6433 0.0003 (1/2923) 0 * Os_TE_592226 Os_TE_592226 Chr12 6740900 6740899 + COPIA2-LTR_OS 6433 0.0003 (1/2920) 0 * Os_TE_592227 Os_TE_592224 Chr12 6740326 6740327 - RIRE2_LTR 11306 0.0003 (1/2934) 0 * Os_TE_592223 Os_TE_592223 Chr12 6740322 6740321 + RIREX_LTR 8828 0.0003 (1/2935) 0 * Os_TE_592224 Os_TE_592220 Chr12 6739584 6739257 - ORSgTEMT00100800 341 0.6421 (1889/2942) 1 Intact * Os_TE_592205 Chr12 6738448 6734888 - ORSiTETNOOT00200 3563 0.0423 (90/2130) -1 Intact Os_TE_592204 Os_TE_592204 Chr12 6734888 6738445 + TWIFBIG 3567 0.0224 (56/2500) -1 Intact Os_TE_592205 Os_TE_592194 Chr12 6728726 6728727 + RETRO2A_LTR 12895 0.0014 (4/2793) 0 * Os_TE_592193 Os_TE_592193 Chr12 6728722 6728721 - RETRO1_LTR 8314 0.0014 (4/2788) 0 * Os_TE_592194 Os_TE_592180 Chr12 6720479 6720480 - ORSgTEMT00300008 396 0.0003 (1/2963) 0 * * Os_TE_592179 Chr12 6720365 6720366 - RIRE2_LTR 11306 0.0004 (1/2778) 0 * Os_TE_592178 Os_TE_592178 Chr12 6720361 6720360 - ORSgTERT00201216 11284 0.0003 (1/2955) 0 * Os_TE_592179 Os_TE_592156 Chr12 6714157 6714158 + MERMITEB 1610 0.4542 (213/469) 0 * Os_TE_592155 Os_TE_592155 Chr12 6714150 6714149 + MERMITE18B 1306 0.0483 (13/269) 0 * Os_TE_592156 Os_TE_592154 Chr12 6713631 6713632 + INDITTO 263 0.5950 (1753/2946) 0 * * Os_TE_592142 Chr12 6712672 6712673 - ORSgTEMT00300008 396 0.5567 (1522/2734) 0 * * Os_TE_592141 Chr12 6712371 6712370 - ORSgTEMT00900099 250 0.0024 (7/2972) 0 * * Os_TE_592131 Chr12 6710465 6710466 - SZLTR 1249 0.0016 (2/1231) 0 * * Os_TE_592094 Chr12 6693647 6694045 + ORSgTEMT00700017 386 0.4158 (1232/2963) 1 Intact * Os_TE_592087 Chr12 6687628 6687629 - RETROSAT2LTR 12796 0.0442 (11/249) 0 * * Os_TE_592083 Chr12 6681172 6687609 + COPIA2-LTR_OS 6433 0.0719 (212/2947) 1 Intact * Os_TE_592080 Chr12 6677640 6677641 + MuDR2_OS 6770 0.0067 (18/2687) 0 * * Os_TE_592077 Chr12 6676782 6676781 + STOWAWAY51_OS 246 0.0046 (5/1098) 0 * Os_TE_592076 Os_TE_592076 Chr12 6676776 6676777 - STOWAWAY51_OS 246 0.0036 (4/1110) 0 * Os_TE_592077 Os_TE_592071 Chr12 6672795 6672794 - ORSgTEMT00901122 247 0.0156 (17/1087) 0 * * Os_TE_592070 Chr12 6672476 6659632 + RETRO1_LTR 8314 0.1890 (209/1106) 1 Intact * Os_TE_592061 Chr12 6659269 6659268 - COPIA2-LTR_OS 6433 0.0009 (1/1105) 0 * * Os_TE_592060 Chr12 6658882 6658627 + STOWAWAY41_OS 264 0.7236 (1029/1422) 1 Intact * Os_TE_592054 Chr12 6656516 6656515 + TRUNCATOR 2918 0.0143 (16/1116) 0 * * Os_TE_592030 Chr12 6646069 6646070 + ORSgTEMT02700001 255 0.0004 (1/2673) 0 * * Os_TE_592023 Chr12 6642574 6642573 - CACTA-I 1124 0.0124 (14/1133) 0 * * Os_TE_592019 Chr12 6640919 6640918 + TRUNCATOR 2918 0.4601 (957/2080) 0 * * Os_TE_592014 Chr12 6639471 6639470 - ORSgTEMT00501255 146 0.0036 (4/1116) 0 * * Os_TE_591984 Chr12 6627842 6626390 + CACTA-B 1103 0.1488 (164/1102) 1 Intact Os_TE_591982 Os_TE_591982 Chr12 6626387 6627839 + ORSgTETN00200005 1121 0.1536 (169/1100) 1 Intact Os_TE_591984 Os_TE_591884 Chr12 6578568 6577826 - CLOUD 734 0.5646 (1320/2338) 1 Intact * Os_TE_591788 Chr12 6534180 6533942 - ORSgTEMT01400022 212 0.8341 (950/1139) 1 Intact * Os_TE_591784 Chr12 6532777 6532778 - ORSgTETN00200001 10994 0.0013 (3/2334) 0 * * Os_TE_591783 Chr12 6532331 6532330 - SZ-38 8643 0.0491 (120/2442) 0 * * Os_TE_591747 Chr12 6517114 6517115 - COPI1_LTR 4721 0.8043 (826/1027) 0 * * Os_TE_591745 Chr12 6516957 6516956 - ORSiTETNOOT00216 3569 0.0043 (4/936) 0 * * Os_TE_591717 Chr12 6497340 6497341 + DS-RICE4N 715 0.0563 (12/213) 0 * * Os_TE_591709 Chr12 6493740 6493739 - RIRE3_LTR 12054 0.0249 (63/2528) 0 * * Os_TE_591655 Chr12 6467938 6467939 - ORSgTETN00200001 10994 0.0417 (9/216) 0 * Os_TE_591654 Os_TE_591654 Chr12 6467936 6467935 + SPMLIKE 10989 0.0467 (10/214) 0 * Os_TE_591655 Os_TE_591631 Chr12 6454587 6454588 - STOWAWAY11_OS 292 0.1498 (37/247) 0 * * Os_TE_591630 Chr12 6452450 6452449 - TOURIST6A_OS 214 0.0040 (3/759) 0 * * Os_TE_591628 Chr12 6451169 6451170 + ORSgTETNOOT00908 242 0.0014 (1/740) 0 * * Os_TE_591625 Chr12 6450359 6450675 - OSTE21 1271 0.2619 (198/756) 1 Intact * Os_TE_591619 Chr12 6444094 6443690 - ORSgTEMT00300122 416 0.5147 (734/1426) 1 Intact * Os_TE_591583 Chr12 6430307 6430308 + GYPSY-B_LTR 7068 0.0095 (7/736) 0 * Os_TE_591582 Os_TE_591582 Chr12 6430303 6430302 - GYPSY1-LTR_OS 8900 0.0097 (7/725) 0 * Os_TE_591583 Os_TE_591580 Chr12 6429890 6429891 - ORMOSIA 482 0.0092 (7/760) 0 * * Os_TE_591575 Chr12 6428961 6428960 + ORSgTEMT01601525 239 0.0097 (7/719) 0 * * Os_TE_591574 Chr12 6428958 6428959 - ORSgTEMT01602413 239 0.0097 (7/719) 0 * Os_TE_591573 Os_TE_591573 Chr12 6428954 6428953 + ORSgTEMT01601018 231 0.0098 (7/714) 0 * Os_TE_591574 Os_TE_591554 Chr12 6407315 6419299 + TRUNCATOR 2918 0.1821 (163/895) 1 Intact * Os_TE_591533 Chr12 6397215 6396618 + SINE03_OS 360 0.6360 (746/1173) 0.8 Intact * Os_TE_591527 Chr12 6395810 6395809 - TRUNCATOR 2918 0.0008 (1/1278) 0 * * Os_TE_591525 Chr12 6395406 6395405 + TRUNCATOR 2918 0.0032 (1/310) 0 * * Os_TE_591522 Chr12 6394753 6394754 - ORSgTERT00201216 11284 0.0159 (12/754) 0 * Os_TE_591521 Os_TE_591521 Chr12 6394749 6394748 - RIRE2_LTR 11306 0.0145 (11/757) 0 * Os_TE_591522 Os_TE_591518 Chr12 6394321 6394322 + ORSgTETNOOT00032 218 0.0324 (24/741) 0 * * Os_TE_591501 Chr12 6383772 6383773 + RIRE2_LTR 11306 0.0364 (8/220) 0 * Os_TE_591500 Os_TE_591500 Chr12 6383768 6383767 - RIRE2_LTR 11306 0.0362 (8/221) 0 * Os_TE_591501 Os_TE_591467 Chr12 6368989 6368988 + NDNA1TNA_OS 334 0.0223 (36/1612) 0 * * Os_TE_591427 Chr12 6347202 6347203 - NDNA1TNA_OS 334 0.0172 (12/699) 0 * Os_TE_591426 Os_TE_591426 Chr12 6347200 6347199 + NDNA1TNA_OS 334 0.0144 (10/696) 0 * Os_TE_591427 Os_TE_591423 Chr12 6346410 6346409 + WUWU 113 0.0205 (16/781) 0 * * Os_TE_591371 Chr12 6313471 6313470 + MERMITE18B 1306 0.0005 (1/2095) 0 * * Os_TE_591283 Chr12 6275260 6275259 + ORSgTEMT00500201 140 0.0030 (4/1320) 0 * Os_TE_591282 Os_TE_591282 Chr12 6275259 6275260 - ORSgTETNOOT00544 147 0.1208 (178/1473) 0 * Os_TE_591283 Os_TE_591276 Chr12 6274458 6274667 - ORSgTETNOOT01741 210 0.2525 (686/2717) 0.89 Intact * Os_TE_591226 Chr12 6230175 6230487 - ORSgTEMT02900061 318 0.7881 (2216/2812) 1 Intact * Os_TE_591208 Chr12 6217874 6217875 - RIREX_LTR 8828 0.0039 (11/2812) 0 * Os_TE_591207 Os_TE_591207 Chr12 6217870 6217869 + RIREX_LTR 8828 0.0036 (10/2816) 0 * Os_TE_591208 Os_TE_591206 Chr12 6217383 6217382 - ORSgTEMT01602413 239 0.2798 (801/2863) 0 * Os_TE_591205 Os_TE_591205 Chr12 6217380 6217381 + ORSgTEMT01602004 234 0.2786 (803/2882) 0 * Os_TE_591206 Os_TE_591199 Chr12 6216431 6216432 + ORSgTEMT01701104 154 0.2333 (641/2748) 0 * * Os_TE_591197 Chr12 6216158 6216157 + TRUNCATOR 2918 0.0154 (45/2924) 0 * Os_TE_591196 Os_TE_591196 Chr12 6216157 6216158 - TRUNCATOR 2918 0.0142 (37/2613) 0 * Os_TE_591197 Os_TE_591192 Chr12 6214846 6214847 - RIREX_LTR 8828 0.0051 (11/2156) 0 * Os_TE_591191 Os_TE_591191 Chr12 6214842 6214841 + RIREX_LTR 8828 0.0052 (11/2129) 0 * Os_TE_591192 Os_TE_591190 Chr12 6214452 6214119 - NDNA1TNA_OS 334 0.0555 (157/2831) 1 Intact * Os_TE_591182 Chr12 6211525 6211763 + ORSgTEMT01602181 239 0.7305 (2168/2968) 1 Intact * Os_TE_591118 Chr12 6190281 6190280 - TRUNCATOR2_LTR 2904 0.0363 (64/1764) 0 * * Os_TE_591086 Chr12 6180370 6180371 - SZ-67LTR 1540 0.1058 (214/2022) 0 * Os_TE_591085 Os_TE_591085 Chr12 6180366 6180365 + SZ-67LTR 1540 0.0962 (204/2120) 0 * Os_TE_591086 Os_TE_591084 Chr12 6180263 6180264 - RIRE2_LTR 11306 0.0894 (244/2730) 0 * Os_TE_591083 Os_TE_591083 Chr12 6180259 6180258 + RIRE2_LTR 11306 0.0926 (250/2699) 0 * Os_TE_591084 Os_TE_591082 Chr12 6180183 6180184 + ORSgTEMT01601809 239 0.0005 (1/1996) 0 * * Os_TE_591068 Chr12 6178566 6171256 + RIREX_LTR 8828 0.0820 (163/1989) 1 Intact Os_TE_591065 Os_TE_591065 Chr12 6171256 6178566 - RIREX_LTR 8828 0.0792 (160/2020) 1 Intact Os_TE_591068 Os_TE_591039 Chr12 6162834 6162835 - ORSgTEMT00500578 129 0.3075 (812/2641) 0 * * Os_TE_591019 Chr12 6157381 6157382 - RIRE2_LTR 11306 0.0757 (207/2736) 0 * Os_TE_591018 Os_TE_591018 Chr12 6157377 6157376 - ORSgTERT00201216 11284 0.0723 (202/2794) 0 * Os_TE_591019 Os_TE_590997 Chr12 6146186 6146185 + TRUNCATOR2_LTR 2904 0.0431 (53/1230) 0 * * Os_TE_590991 Chr12 6141935 6141936 - COPIA2-LTR_OS 6433 0.0004 (1/2760) 0 * * Os_TE_590981 Chr12 6136647 6136409 - ORSgTEMT01601768 238 0.8445 (1646/1949) -1 Intact Os_TE_590979 Os_TE_590979 Chr12 6136409 6136647 + ORSgTEMT01602181 239 0.7018 (1756/2502) -1 Intact Os_TE_590981 Os_TE_590966 Chr12 6129609 6133307 + ORSiTERT00200145 12238 0.0611 (168/2750) 1 Intact * Os_TE_590962 Chr12 6128963 6128964 - CACTA-Q 2268 0.2667 (735/2756) 0 * * Os_TE_590950 Chr12 6124499 6124500 - ORSgTETN00200001 10994 0.0151 (27/1790) 0 * Os_TE_590949 Os_TE_590949 Chr12 6124497 6124496 + SPMLIKE 10989 0.0298 (70/2346) 0 * Os_TE_590950 Os_TE_590947 Chr12 6124207 6124208 - ORSgTERT00201216 11284 0.0669 (193/2884) 0 * * Os_TE_590945 Chr12 6123932 6123933 - RIREX_LTR 8828 0.0004 (1/2639) 0 * Os_TE_590944 Os_TE_590944 Chr12 6123928 6123927 + RIREX_LTR 8828 0.0003 (1/2925) 0 * Os_TE_590945 Os_TE_590939 Chr12 6123257 6123256 + SPMLIKE 10989 0.0028 (1/351) 0 * * Os_TE_590817 Chr12 6035538 6035539 + SPMLIKE 10989 0.0678 (12/177) 0 * * Os_TE_590713 Chr12 5966742 5968250 + ORSiCMCM00100013 9728 0.1264 (170/1345) 1 Intact * Os_TE_590706 Chr12 5959301 5959302 - RETROSAT4_LTR 13504 0.7955 (638/802) 0 * Os_TE_590705 Os_TE_590705 Chr12 5959297 5959296 + RETROSAT4_LTR 13504 0.7770 (575/740) 0 * Os_TE_590706 Os_TE_590698 Chr12 5957325 5957582 + STOWAWAY34_OS 256 0.1184 (149/1258) 1 Intact * Os_TE_590652 Chr12 5941196 5944357 + RIRE3_LTR 12054 0.1851 (152/821) 1 Solo_LTR * Os_TE_590650 Chr12 5938715 5938716 + SZ-36LTR 5825 0.0625 (11/176) 0 * * Os_TE_590585 Chr12 5903397 5903398 + ORSgTETNOOT00908 242 0.0472 (12/254) 0 * Os_TE_590584 Os_TE_590584 Chr12 5903390 5903389 + ORSgTETNOOT01219 231 0.0471 (12/255) 0 * Os_TE_590585 Os_TE_590567 Chr12 5894332 5893591 + CLOUD 734 0.1918 (386/2012) 1 Intact Os_TE_590566 Os_TE_590566 Chr12 5893591 5894332 - CLOUD 734 0.1900 (380/2000) 1 Intact Os_TE_590567 Os_TE_590548 Chr12 5888163 5888164 + SPMLIKE 10989 0.0062 (11/1782) 0 * Os_TE_590547 Os_TE_590547 Chr12 5888161 5888160 - ORSgTETN00200001 10994 0.0051 (10/1970) 0 * Os_TE_590548 Os_TE_590477 Chr12 5872973 5872972 + ORSgTEMT01601934 207 0.1276 (236/1849) 0 * Os_TE_590476 Os_TE_590476 Chr12 5872959 5872960 + ORSgTEMT01601612 233 0.1256 (232/1847) 0 * Os_TE_590477 Os_TE_590470 Chr12 5871534 5871533 + ENSPM_OS 9843 0.1959 (404/2062) 0 * * Os_TE_590468 Chr12 5869493 5869252 - STOWAWAY13_OS 251 0.5558 (448/806) 1 Intact Os_TE_590466 Os_TE_590466 Chr12 5869252 5869493 - STOWAWAY13_OS 251 0.5134 (460/896) 1 Intact Os_TE_590468 Os_TE_590456 Chr12 5867717 5867716 + ORSiTERTOOT00027 10853 0.0815 (79/969) 0 * * Os_TE_590451 Chr12 5866024 5866023 - SZLTR 1249 0.0008 (1/1267) 0 * * Os_TE_590449 Chr12 5864813 5864812 - RETROSAT4_LTR 13504 0.0012 (3/2436) 0 * * Os_TE_590425 Chr12 5859502 5859503 - NDNA1TNA_OS 334 0.5076 (1130/2226) 0 * * Os_TE_590422 Chr12 5859247 5859248 - SC-3_LTR 5748 0.0188 (42/2232) 0 * * Os_TE_590420 Chr12 5855186 5855185 + CASGRANDA 465 0.0314 (69/2200) 0 * * Os_TE_590415 Chr12 5854895 5854894 + ORSgTEMT00600120 364 0.7915 (1655/2091) 0 * * Os_TE_590389 Chr12 5843874 5843873 + STOWAWAY15-2_OS 145 0.4988 (1084/2173) 0 * * Os_TE_590388 Chr12 5843452 5843451 + ORSgTEMT00100828 349 0.5054 (1118/2212) 0 * * Os_TE_590385 Chr12 5840280 5840279 - SC-7_LTR 4431 0.0009 (2/2218) 0 * * Os_TE_590382 Chr12 5838208 5838209 - ORSiTERTOOT00329 5144 0.0379 (84/2217) 0 * * Os_TE_590378 Chr12 5837302 5837301 + ORSiTERTOOT00296 5553 0.0009 (2/2212) 0 * * Os_TE_590377 Chr12 5835741 5835742 + ORSiCMCM00100019 2717 0.0053 (6/1130) 0 * Os_TE_590376 Os_TE_590376 Chr12 5835737 5835736 - TRUNCATOR2_LTR 2904 0.0053 (6/1131) 0 * Os_TE_590377 Os_TE_590375 Chr12 5835338 5835337 - SC-3_LTR 5748 0.3226 (361/1119) 0 * * Os_TE_590372 Chr12 5833581 5833580 - SC-3_LTR 5748 0.0054 (12/2223) 0 * * Os_TE_590371 Chr12 5833210 5833211 + TOS17LTR 138 0.0078 (17/2193) 0 * * Os_TE_590367 Chr12 5830229 5830230 - ORSiTERTOOT00402 2660 0.0024 (5/2092) 0 * Os_TE_590366 Os_TE_590366 Chr12 5830225 5830224 + ORSiTERTOOT00402 2660 0.0028 (6/2110) 0 * Os_TE_590367 Os_TE_590363 Chr12 5829178 5829179 - ORSiTERTOOT00402 2660 0.0005 (1/2211) 0 * Os_TE_590362 Os_TE_590362 Chr12 5829174 5829173 + ORSiTERTOOT00402 2660 0.0005 (1/2202) 0 * Os_TE_590363 Os_TE_590361 Chr12 5825962 5825963 + OSTONOR1_LTR 6440 0.0005 (1/2214) 0 * Os_TE_590360 Os_TE_590360 Chr12 5825958 5825957 - ORSiTERT00100062 5674 0.0005 (1/2213) 0 * Os_TE_590361 Os_TE_590353 Chr12 5824607 5824606 - MuDR4_OS 7610 0.0005 (1/2161) 0 * * Os_TE_590345 Chr12 5822063 5821416 + TWIFB1 3737 0.1269 (125/985) 1 Intact * Os_TE_590332 Chr12 5816965 5816964 + MERMITEB 1610 0.3535 (871/2464) 0 * * Os_TE_590325 Chr12 5808066 5808065 + ORSgTEMT00100291 345 0.0041 (5/1224) 0 * * Os_TE_590320 Chr12 5807558 5807748 + EXPLORER 210 0.6953 (2070/2977) 1 Intact * Os_TE_590319 Chr12 5807259 5807260 - LINE1-7_OS 7306 0.3204 (956/2984) 0 * * Os_TE_590314 Chr12 5801379 5801380 - MUDRN4_OS 332 0.0020 (6/2986) 0 * * Os_TE_590309 Chr12 5800630 5800631 + ORSgTEMT05000092 279 0.3113 (917/2946) 0 * * Os_TE_590308 Chr12 5800624 5800625 + ORSgTEMT05000092 279 0.3100 (912/2942) 0 * * Os_TE_590307 Chr12 5800578 5800579 - CASTAWAY 364 0.3186 (950/2982) 0 * * Os_TE_590305 Chr12 5800271 5800272 - SZ-14LTR 1193 0.3169 (947/2988) 0 * * Os_TE_590301 Chr12 5796987 5795659 + OSTE33 1012 0.3281 (168/512) 1 Intact Os_TE_590298 Os_TE_590298 Chr12 5795659 5796987 + OSTE33 1012 0.4021 (963/2395) 1 Intact Os_TE_590301 Os_TE_590297 Chr12 5795503 5795504 - OsSN3 183 0.3164 (930/2939) 0 * Os_TE_590296 Os_TE_590296 Chr12 5795494 5795493 + OsSN3 183 0.3260 (968/2969) 0 * Os_TE_590297 Os_TE_590295 Chr12 5795015 5795014 + ORSgTEMT01601591 242 0.0069 (20/2912) 0 * * Os_TE_590280 Chr12 5794156 5794401 - ORSgTEMT00900099 250 0.3358 (982/2924) 1 Intact * Os_TE_590260 Chr12 5789707 5789706 + ORSgTEMT01602637 232 0.2926 (866/2960) 0 * Os_TE_590259 Os_TE_590259 Chr12 5789704 5789705 + ORSgTEMT01600403 239 0.2895 (854/2950) 0 * Os_TE_590260 Os_TE_590257 Chr12 5789191 5788841 - ORSgTEMT01900024 348 0.7585 (2142/2824) 1 Intact Os_TE_590255 Os_TE_590255 Chr12 5788842 5789188 - TYPEH 309 0.7169 (2120/2957) 1 Intact Os_TE_590257 Os_TE_590254 Chr12 5788801 5788802 + DS-RICE4N 715 0.0024 (7/2963) 0 * * Os_TE_590252 Chr12 5788620 5788621 + SEVERIN-2 1952 0.0018 (4/2188) 0 * * Os_TE_590250 Chr12 5788421 5788420 + CLOUD-7 495 0.2865 (841/2935) 0 * * Os_TE_590248 Chr12 5787344 5787343 - ORSgTEMT00900741 219 0.2692 (780/2897) 0 * Os_TE_590247 Os_TE_590247 Chr12 5787343 5787344 + DITTO 244 0.2825 (831/2942) 0 * Os_TE_590248 Os_TE_590246 Chr12 5787216 5787217 + ORSiTERT00200145 12238 0.3184 (950/2984) 0 * * Os_TE_590241 Chr12 5784865 5784864 + CACTA-B 1103 0.0079 (17/2160) 0 * Os_TE_590240 Os_TE_590240 Chr12 5784864 5784865 - CACTA-H 1152 0.0079 (17/2154) 0 * Os_TE_590241 Os_TE_590238 Chr12 5784789 5784788 - COPIA2-LTR_OS 6433 0.0005 (1/2150) 0 * * Os_TE_590236 Chr12 5784362 5784209 + ORSgTEMT01702031 156 0.7333 (2081/2838) 1 Intact * Os_TE_590219 Chr12 5782128 5780274 - ENSPM3_OS 10837 0.3543 (1053/2972) 1 Intact Os_TE_590218 Os_TE_590218 Chr12 5780273 5782128 - TNR3 1536 0.3459 (1015/2934) 1 Intact Os_TE_590219 Os_TE_590217 Chr12 5780251 5780250 + CACTA-H 1152 0.0142 (15/1055) 0 * Os_TE_590216 Os_TE_590216 Chr12 5780250 5780251 + ORSgTETN00200005 1121 0.0047 (14/2968) 0 * Os_TE_590217 Os_TE_590210 Chr12 5778990 5778989 + COPI2_LTR 4733 0.0003 (1/2945) 0 * * Os_TE_590206 Chr12 5778203 5778204 + CACTA-M 1129 0.6542 (1884/2880) 0 * * Os_TE_590203 Chr12 5778115 5777963 - ORSgTEMT01700029 143 0.3445 (990/2874) 1 Intact * Os_TE_590191 Chr12 5774351 5774352 + SEVERIN-2 1952 0.0721 (214/2970) 0 * * Os_TE_590189 Chr12 5773389 5773390 - SC-7_LTR 4431 0.0003 (1/2978) 0 * Os_TE_590188 Os_TE_590188 Chr12 5773385 5773384 + SC-7_LTR 4431 0.0003 (1/2983) 0 * Os_TE_590189 Os_TE_590168 Chr12 5764822 5764823 + RIREX_LTR 8828 0.0479 (143/2987) 0 * Os_TE_590167 Os_TE_590167 Chr12 5764818 5764817 - RIREX_LTR 8828 0.0479 (143/2988) 0 * Os_TE_590168 Os_TE_590161 Chr12 5759218 5759219 + SC-3_LTR 5748 0.0024 (7/2977) 0 * Os_TE_590160 Os_TE_590160 Chr12 5759214 5759213 - SC-3_LTR 5748 0.0024 (7/2977) 0 * Os_TE_590161 Os_TE_590158 Chr12 5756496 5756497 - ORSiTETNOOT00216 3569 0.0011 (3/2842) 0 * * Os_TE_590156 Chr12 5755889 5755888 - F524 291 0.0024 (7/2923) 0 * * Os_TE_590146 Chr12 5754186 5754187 - STOWAWAY1_OS 149 0.1184 (348/2939) 0 * * Os_TE_590113 Chr12 5741559 5741711 - ORSgTEMT01700299 212 0.8336 (2434/2920) 1 Intact * Os_TE_590111 Chr12 5740499 5740261 - ORSgTEMT01601696 238 0.8290 (2467/2976) 1 Intact Os_TE_590110 Os_TE_590110 Chr12 5740260 5740498 + ORSgTEMT01602029 239 0.8203 (2424/2955) 1 Intact Os_TE_590111 Os_TE_590106 Chr12 5731512 5729987 + SZ-37_LTR 12001 0.8389 (2431/2898) 1 Solo_LTR * Os_TE_590099 Chr12 5727222 5727223 + SPMLIKE 10989 0.0660 (197/2984) 0 * Os_TE_590098 Os_TE_590098 Chr12 5727220 5727219 - ORSgTETN00200001 10994 0.0645 (190/2947) 0 * Os_TE_590099 Os_TE_590097 Chr12 5727190 5727191 - COPIA2-LTR_OS 6433 0.0003 (1/2980) 0 * Os_TE_590096 Os_TE_590096 Chr12 5727186 5727185 + COPIA2-LTR_OS 6433 0.0003 (1/2967) 0 * Os_TE_590097 Os_TE_590095 Chr12 5727022 5727023 + CACTA-M 1129 0.1825 (543/2975) 0 * * Os_TE_590078 Chr12 5723016 5723017 + DASIA-2 1198 0.0003 (1/2995) 0 * Os_TE_590077 Os_TE_590077 Chr12 5723008 5723007 + DASIA-2 1198 0.0003 (1/2995) 0 * Os_TE_590078 Os_TE_590038 Chr12 5712757 5712758 + RETRO2_LTR 12874 0.0017 (5/2974) 0 * Os_TE_590037 Os_TE_590037 Chr12 5712753 5712752 - RETRO1_LTR 8314 0.0017 (5/2975) 0 * Os_TE_590038 Os_TE_590035 Chr12 5712446 5712447 + OLO24 345 0.0004 (1/2786) 0 * Os_TE_590034 Os_TE_590034 Chr12 5712444 5712443 - OLO24 345 0.0004 (1/2747) 0 * Os_TE_590035 Os_TE_590018 Chr12 5702953 5702954 + MuDR4_OS 7610 0.0017 (5/2986) 0 * * Os_TE_590001 Chr12 5692795 5692796 + TWIFBIG 3567 0.0030 (9/2983) 0 * Os_TE_590000 Os_TE_590000 Chr12 5692788 5692787 - ORSiTETNOOT00216 3569 0.0034 (10/2977) 0 * Os_TE_590001 Os_TE_589999 Chr12 5692725 5692724 - SINE03_OS 360 0.0013 (4/2963) 0 * * Os_TE_589981 Chr12 5688951 5688952 - SC-8_LTR 4951 0.0003 (1/2996) 0 * Os_TE_589980 Os_TE_589980 Chr12 5688947 5688946 + SC-8_LTR 4951 0.0003 (1/2997) 0 * Os_TE_589981 Os_TE_589978 Chr12 5682861 5682860 - GAIJIN 147 0.0020 (6/2975) 0 * * Os_TE_589967 Chr12 5681198 5681199 + COPIA2-LTR_OS 6433 0.0010 (3/2996) 0 * Os_TE_589966 Os_TE_589966 Chr12 5681194 5681193 - COPIA2-LTR_OS 6433 0.0013 (4/2995) 0 * Os_TE_589967 Os_TE_589959 Chr12 5680719 5680720 + AMYLTP 383 0.0007 (2/2983) 0 * Os_TE_589958 Os_TE_589958 Chr12 5680711 5680710 - AMYLTP 383 0.0007 (2/2985) 0 * Os_TE_589959 Os_TE_589955 Chr12 5678983 5678984 - NDNA1TNA_OS 334 0.0017 (5/2992) 0 * Os_TE_589954 Os_TE_589954 Chr12 5678981 5678980 + NDNA1TNA_OS 334 0.0017 (5/2992) 0 * Os_TE_589955 Os_TE_589952 Chr12 5678565 5678566 + NDNA1TNA_OS 334 0.0007 (2/2980) 0 * * Os_TE_589950 Chr12 5678435 5678218 - STOWAWAY18_OS 216 0.3774 (1128/2989) 1 Intact * Os_TE_589945 Chr12 5677615 5677616 + ORSgTEMT01601122 212 0.6345 (1863/2936) 0 * * Os_TE_589932 Chr12 5672571 5672572 - ORSgTEMT02400179 221 0.0017 (5/2874) 0 * * Os_TE_589922 Chr12 5669281 5669282 - INDITTO 263 0.0003 (1/2903) 0 * * Os_TE_589916 Chr12 5668480 5668479 + ORSgTETNOOT00908 242 0.0787 (234/2973) 0 * * Os_TE_589873 Chr12 5603127 5603128 + ORSiTERTOOT00296 5553 0.0017 (5/2982) 0 * Os_TE_589872 Os_TE_589872 Chr12 5603123 5603122 - SC-3_LTR 5748 0.0017 (5/2987) 0 * Os_TE_589873 Os_TE_589871 Chr12 5602181 5602182 + TWIFBIG 3567 0.0196 (58/2966) 0 * * Os_TE_589870 Chr12 5602179 5602178 - ORSiTETNOOT00134 607 0.0054 (16/2981) 0 * * Os_TE_589846 Chr12 5576085 5576084 - OSTE18 129 0.0053 (16/2993) 0 * Os_TE_589845 Os_TE_589845 Chr12 5576081 5576082 - OSTE18 129 0.0060 (18/2996) 0 * Os_TE_589846 Os_TE_589830 Chr12 5567558 5567559 + OsSN3 183 0.0133 (38/2854) 0 * * Os_TE_589820 Chr12 5558411 5558412 - ORSiTERTOOT00392 5205 0.0006 (1/1675) 0 * Os_TE_589819 Os_TE_589819 Chr12 5558407 5558406 + ORSiTERTOOT00392 5205 0.0006 (1/1676) 0 * Os_TE_589820 Os_TE_589781 Chr12 5539481 5539480 + COPIA2-LTR_OS 6433 0.0004 (1/2805) 0 * * Os_TE_589711 Chr12 5515145 5515144 + EnSpm-N1_OS 4256 0.0017 (5/2900) 0 * Os_TE_589710 Os_TE_589710 Chr12 5515141 5515142 - EnSpm-N1_OS 4256 0.0034 (10/2908) 0 * Os_TE_589711 Os_TE_589709 Chr12 5514547 5514548 + ORSiTERTOOT00441 4741 0.0003 (1/2924) 0 * Os_TE_589708 Os_TE_589708 Chr12 5514543 5514542 - ORSiTERTOOT00441 4741 0.0003 (1/2925) 0 * Os_TE_589709 Os_TE_589688 Chr12 5502389 5502388 + SZ-55_LTR 10318 0.0003 (1/2985) 0 * * Os_TE_589687 Chr12 5502258 5502259 - SZ-55_LTR 10318 0.0139 (41/2945) 0 * * Os_TE_589651 Chr12 5484833 5484834 - COPI2_LTR 4733 0.0003 (1/2877) 0 * * Os_TE_589629 Chr12 5478452 5478453 - GYPSY-B_LTR 7068 0.0291 (86/2957) 0 * * Os_TE_589624 Chr12 5477571 5477572 - STOWAWAY47_OS 148 0.0010 (3/2906) 0 * * Os_TE_589620 Chr12 5477377 5477378 + SETARIA 1402 0.5579 (1595/2859) 0 * * Os_TE_589617 Chr12 5477119 5477120 - COPIA2-LTR_OS 6433 0.0010 (3/2932) 0 * Os_TE_589616 Os_TE_589616 Chr12 5477115 5477114 + COPIA2-LTR_OS 6433 0.0010 (3/2916) 0 * Os_TE_589617 Os_TE_589603 Chr12 5472877 5472878 + RETROSAT4_LTR 13504 0.0021 (6/2882) 0 * Os_TE_589602 Os_TE_589602 Chr12 5472873 5472872 - SZ-35LTR 3853 0.0017 (5/2881) 0 * Os_TE_589603 Os_TE_589594 Chr12 5470971 5470972 - LINE-4_OS 3662 0.6216 (1802/2899) 0 * * Os_TE_589585 Chr12 5466944 5466945 + SPMLIKE 10989 0.0104 (31/2973) 0 * * Os_TE_589582 Chr12 5465539 5465540 + STOWAWAY21_OS 243 0.0003 (1/2970) 0 * * Os_TE_589562 Chr12 5460791 5460790 + DS-RICE4N 715 0.0009 (1/1079) 0 * * Os_TE_589560 Chr12 5460246 5460247 - ORSgTETNOOT00505 201 0.0269 (80/2976) 0 * * Os_TE_589559 Chr12 5459842 5459841 + ORSgTEMT01400032 215 0.6334 (1892/2987) 0 * Os_TE_589558 Os_TE_589558 Chr12 5459836 5459837 + ORSgTEMT01400024 215 0.6216 (1812/2915) 0 * Os_TE_589559 Os_TE_589557 Chr12 5459434 5459123 + ORSgTEMT00101457 316 0.8887 (1086/1222) 1 Intact * Os_TE_589549 Chr12 5458653 5458788 + STOWAWAY46_OS 154 0.3559 (1034/2905) 1 Intact * Os_TE_589548 Chr12 5457760 5457759 + ORSgTETNOOT00908 242 0.0003 (1/2996) 0 * * Os_TE_589546 Chr12 5456266 5456265 + COPIA2-LTR_OS 6433 0.0004 (1/2677) 0 * * Os_TE_589545 Chr12 5455200 5455201 + OSTE33 1012 0.0157 (47/2991) 0 * Os_TE_589544 Os_TE_589544 Chr12 5455191 5455190 + OSTE33 1012 0.0134 (40/2984) 0 * Os_TE_589545 Os_TE_589542 Chr12 5454924 5454925 - ORSgTEMT00500278 141 0.0003 (1/2981) 0 * * Os_TE_589536 Chr12 5454029 5454030 - RIREX_LTR 8828 0.0003 (1/2951) 0 * Os_TE_589535 Os_TE_589535 Chr12 5454025 5454024 + RIREX_LTR 8828 0.0003 (1/2954) 0 * Os_TE_589536 Os_TE_589528 Chr12 5452197 5452198 - ORSgTEMT01602366 238 0.6145 (1602/2607) 0 * Os_TE_589526 Os_TE_589526 Chr12 5452154 5452153 + SEVERIN-2 1952 0.5621 (1312/2334) 0 * Os_TE_589528 Os_TE_589525 Chr12 5452078 5452079 - ORSgTEMT00501204 149 0.6688 (1973/2950) 0 * * Os_TE_589516 Chr12 5448831 5448832 + MuDR-5_OS 17471 0.1194 (348/2915) 0 * * Os_TE_589506 Chr12 5439640 5439641 - CASLET 354 0.1919 (243/1266) 0 * * Os_TE_589504 Chr12 5439202 5439201 + ORSgTEMT01601591 242 0.0003 (1/2955) 0 * * Os_TE_589503 Chr12 5438826 5438827 - RIRE2_LTR 11306 0.0003 (1/2982) 0 * Os_TE_589502 Os_TE_589502 Chr12 5438822 5438821 + RIRE2_LTR 11306 0.0003 (1/2975) 0 * Os_TE_589503 Os_TE_589485 Chr12 5435125 5434863 + INDITTO 263 0.2554 (261/1022) 1 Intact Os_TE_589484 Os_TE_589484 Chr12 5434863 5435125 - INDITTO 263 0.2571 (263/1023) 1 Intact Os_TE_589485 Os_TE_589454 Chr12 5416002 5416003 - COPIA2-LTR_OS 6433 0.0010 (1/1009) 0 * * Os_TE_589436 Chr12 5407031 5407030 + COPI2_LTR 4733 0.0010 (1/1049) 0 * * Os_TE_589408 Chr12 5397771 5397770 + COPIA2-LTR_OS 6433 0.0030 (3/988) 0 * * Os_TE_589407 Chr12 5396700 5396699 + RIRE3A_LTR 10580 0.0085 (11/1296) 0 * * Os_TE_589401 Chr12 5384522 5383860 + BAJIELTR 4500 0.3465 (1033/2981) 1 Solo_LTR Os_TE_589399 Os_TE_589399 Chr12 5383855 5384522 - BAJIELTR 4500 0.3750 (1042/2779) 1 Solo_LTR Os_TE_589401 Os_TE_589395 Chr12 5382768 5382769 - ORSgTEMT01702216 170 0.6659 (1975/2966) 0 * * Os_TE_589388 Chr12 5377017 5377018 - CLOUD 734 0.0014 (4/2926) 0 * Os_TE_589387 Os_TE_589387 Chr12 5377009 5377008 - CLOUD 734 0.0017 (5/2948) 0 * Os_TE_589388 Os_TE_589355 Chr12 5362270 5362269 + ORSiTERTOOT00027 10853 0.0009 (1/1053) 0 * * Os_TE_589270 Chr12 5302495 5302496 - SZ-48LTR 3632 0.0009 (1/1069) 0 * * Os_TE_589193 Chr12 5257983 5257984 - CLOUD 734 0.0019 (2/1058) 0 * * Os_TE_589171 Chr12 5241631 5241630 - RIREX_LTR 8828 0.1156 (117/1012) 0 * * Os_TE_589125 Chr12 5205548 5205549 - ORSgTETN00200001 10994 0.0056 (6/1066) 0 * Os_TE_589124 Os_TE_589124 Chr12 5205546 5205545 + SPMLIKE 10989 0.0056 (6/1066) 0 * Os_TE_589125 Os_TE_589058 Chr12 5174394 5174393 + COPIA2-LTR_OS 6433 0.0007 (2/2912) 0 * * Os_TE_589046 Chr12 5170708 5170707 + ORSiTERTOOT00027 10853 0.0057 (17/2988) 0 * * Os_TE_589043 Chr12 5167852 5167851 + F569 228 0.0195 (21/1076) 0 * * Os_TE_589040 Chr12 5166436 5166435 + HELITRON2_OS 15167 0.0948 (280/2954) 0 * Os_TE_589039 Os_TE_589039 Chr12 5166435 5166436 - HELITRON2_OS 15167 0.1056 (316/2992) 0 * Os_TE_589040 Os_TE_589038 Chr12 5166283 5166104 + STOWAWAY47_OS 148 0.4509 (1344/2981) 1 Intact * Os_TE_589035 Chr12 5165459 5161872 - SEVERIN-2 1952 0.7701 (1042/1353) 1 Intact * Os_TE_589026 Chr12 5161782 5161783 - SZ-37_LTR 12001 0.0038 (4/1061) 0 * Os_TE_589025 Os_TE_589025 Chr12 5161778 5161777 + SZ-37_LTR 12001 0.1058 (315/2978) 0 * Os_TE_589026 Os_TE_589020 Chr12 5160445 5160446 + ORSgTEMT01601122 212 0.0022 (3/1363) 0 * * Os_TE_589017 Chr12 5159515 5159514 + NDNA1TNA_OS 334 0.2304 (311/1350) 0 * Os_TE_589016 Os_TE_589016 Chr12 5159514 5159515 + ORSgTEMT00100428 339 0.2320 (315/1358) 0 * Os_TE_589017 Os_TE_589007 Chr12 5153666 5153667 - ORSiTERTOOT00270 8019 0.2381 (324/1361) 0 * Os_TE_589006 Os_TE_589006 Chr12 5153662 5153661 + RETRO3_LTR 12751 0.2259 (304/1346) 0 * Os_TE_589007 Os_TE_589003 Chr12 5152220 5152221 + STOWAWAY18_OS 216 0.0007 (1/1361) 0 * * Os_TE_589001 Chr12 5152019 5152018 - SPMLIKE 10989 0.0022 (3/1342) 0 * * Os_TE_589000 Chr12 5151691 5151692 - COPIA1-LTR_OS 9292 0.2286 (310/1356) 0 * Os_TE_588999 Os_TE_588999 Chr12 5151687 5151686 + COPIA1-LTR_OS 9292 0.2337 (319/1365) 0 * Os_TE_589000 Os_TE_588996 Chr12 5149879 5149751 + OSTE19 162 0.7720 (1036/1342) 1 Intact Os_TE_588995 Os_TE_588995 Chr12 5149751 5149879 + WUWU 113 0.8089 (1037/1282) 1 Intact Os_TE_588996 Os_TE_588994 Chr12 5149285 5149284 - LINE-6_OS 4886 0.2349 (318/1354) 0 * * Os_TE_588979 Chr12 5138110 5138111 + TYPEU4 402 0.0130 (18/1382) 0 * Os_TE_588978 Os_TE_588978 Chr12 5138102 5138101 - TYPEU1 380 0.0137 (19/1382) 0 * Os_TE_588979 Os_TE_588977 Chr12 5137996 5137995 - ORSgTEMT01701624 178 0.2309 (317/1373) 0 * * Os_TE_588974 Chr12 5135694 5135695 + COPIA1-LTR_OS 9292 0.1143 (317/2773) 0 * Os_TE_588973 Os_TE_588973 Chr12 5135690 5135689 - SZ-5LTR 1223 0.0995 (294/2954) 0 * Os_TE_588974 Os_TE_588964 Chr12 5134647 5134648 - YOUREN 286 0.5587 (1665/2980) 0 * Os_TE_588963 Os_TE_588963 Chr12 5134645 5134644 + YOUREN 286 0.5569 (1659/2979) 0 * Os_TE_588964 Os_TE_588948 Chr12 5131123 5131122 - SZ-62LTR 3649 0.5590 (1657/2964) 0 * * Os_TE_588946 Chr12 5127951 5127952 + RIREX_LTR 8828 0.0003 (1/2988) 0 * Os_TE_588945 Os_TE_588945 Chr12 5127947 5127946 - RIREX_LTR 8828 0.0003 (1/2988) 0 * Os_TE_588946 Os_TE_588944 Chr12 5127862 5127863 + ORSiCMCM00100019 2717 0.5253 (1475/2808) 0 * Os_TE_588943 Os_TE_588943 Chr12 5127858 5127857 - TRUNCATOR2_LTR 2904 0.5599 (1672/2986) 0 * Os_TE_588944 Os_TE_588929 Chr12 5122138 5122137 + SPMLIKE 10989 0.0003 (1/2956) 0 * * Os_TE_588927 Chr12 5122016 5122017 + HELITRON2_OS 15167 0.0047 (14/2978) 0 * * Os_TE_588914 Chr12 5116893 5116892 + ORSgTEMT01601122 212 0.0074 (22/2976) 0 * * Os_TE_588910 Chr12 5116345 5116346 + ORSgTEMT00100734 317 0.1052 (312/2967) 0 * * Os_TE_588886 Chr12 5106253 5106254 - ORSgTEMT00900099 250 0.0038 (11/2893) 0 * * Os_TE_588881 Chr12 5105843 5105844 - MERMITE18B 1306 0.1036 (307/2962) 0 * Os_TE_588880 Os_TE_588880 Chr12 5105835 5105834 - MERMITE18B 1306 0.1047 (311/2970) 0 * Os_TE_588881 Os_TE_588878 Chr12 5103639 5103640 - RETROSAT2LTRA 3112 0.0003 (1/2935) 0 * * Os_TE_588874 Chr12 5102451 5102450 - ORSgTEMT02400179 221 0.0048 (14/2923) 0 * * Os_TE_588870 Chr12 5099560 5099561 + RIREX_LTR 8828 0.0003 (1/2983) 0 * * Os_TE_588868 Chr12 5098710 5098709 + TREP215 239 0.0037 (11/2942) 0 * Os_TE_588867 Os_TE_588867 Chr12 5098707 5098708 + ORSgTEMT01602161 238 0.0041 (12/2942) 0 * Os_TE_588868 Os_TE_588864 Chr12 5097912 5097911 - STOWAWAY51_OS 246 0.0003 (1/2971) 0 * Os_TE_588863 Os_TE_588863 Chr12 5097906 5097907 + STOWAWAY51_OS 246 0.0003 (1/2974) 0 * Os_TE_588864 Os_TE_588846 Chr12 5096051 5096052 + AMYLTP 383 0.0084 (25/2983) 0 * Os_TE_588845 Os_TE_588845 Chr12 5096043 5096042 - AMYLTP 383 0.0084 (25/2985) 0 * Os_TE_588846 Os_TE_588844 Chr12 5095637 5095636 - ORSgTEMT00900563 246 0.0171 (51/2989) 0 * Os_TE_588843 Os_TE_588843 Chr12 5095633 5095634 - ORSgTEMT00900741 219 0.0168 (50/2983) 0 * Os_TE_588844 Os_TE_588826 Chr12 5084776 5084775 - RETRO1_LTR 8314 0.0003 (1/2976) 0 * * Os_TE_588823 Chr12 5083975 5083974 + STOWAWAY9_OS 235 0.0166 (47/2839) 0 * * Os_TE_588822 Chr12 5083970 5083971 + INDITTO 263 0.5890 (1681/2854) -1 * Os_TE_588821 Os_TE_588821 Chr12 5083968 5083967 - INDITTO 263 0.5845 (1629/2787) -1 * Os_TE_588822 Os_TE_588820 Chr12 5083964 5083965 - ORSgTETNOOT01337 247 0.5890 (1688/2866) -1 * * Os_TE_588813 Chr12 5082508 5082509 + ORSgTEMT01400039 200 0.0077 (23/2982) 0 * * Os_TE_588806 Chr12 5077857 5077858 - STOWAWAY51_OS 246 0.0037 (11/2935) 0 * * Os_TE_588798 Chr12 5074952 5074953 + ORSgTETNOOT00908 242 0.0007 (2/2885) 0 * * Os_TE_588794 Chr12 5072813 5072814 + MUDRN5_OS 374 0.0003 (1/2968) 0 * Os_TE_588793 Os_TE_588793 Chr12 5072812 5072811 - ORSgTEMT00700002 381 0.0003 (1/2988) 0 * Os_TE_588794 Os_TE_588791 Chr12 5072705 5072706 + ORSgTETNOOT00906 136 0.0088 (26/2963) 0 * Os_TE_588790 Os_TE_588790 Chr12 5072703 5072702 - ORSgTEMT00500675 140 0.0090 (27/2992) 0 * Os_TE_588791 Os_TE_588789 Chr12 5072689 5072688 - ORSgTEMT00901345 248 0.0088 (26/2968) 0 * Os_TE_588788 Os_TE_588788 Chr12 5072687 5072688 - ORSgTEMT00901041 237 0.0087 (26/2985) 0 * Os_TE_588789 Os_TE_588759 Chr12 5060973 5060974 - STOWAWAY44_OS 240 0.0085 (23/2705) 0 * Os_TE_588758 Os_TE_588758 Chr12 5060969 5060968 - STOWAWAY51_OS 246 0.0066 (18/2715) 0 * Os_TE_588759 Os_TE_588754 Chr12 5060356 5060357 + RETROSAT2LTRA 3112 0.0101 (26/2566) 0 * * Os_TE_588752 Chr12 5060181 5060180 - RETROSAT2LTR 12796 0.0084 (25/2988) 0 * * Os_TE_588751 Chr12 5059322 5059321 - DS-RICE4N 715 0.0080 (24/2991) 0 * * Os_TE_588738 Chr12 5054080 5054081 + Cassandra_OS-LTR 764 0.0093 (27/2900) 0 * Os_TE_588737 Os_TE_588737 Chr12 5054076 5054075 - Cassandra_OS-LTR 764 0.0087 (25/2890) 0 * Os_TE_588738 Os_TE_588733 Chr12 5053628 5053627 - COPIA2-LTR_OS 6433 0.0094 (25/2661) 0 * * Os_TE_588729 Chr12 5052754 5052755 + ORSgTEMT05000092 279 0.5751 (1700/2956) 0 * * Os_TE_588724 Chr12 5051625 5051421 + EXPLORER 210 0.5070 (1239/2444) 1 Intact * Os_TE_588708 Chr12 5049756 5049755 + ORSgTEMT00100531 325 0.5649 (1627/2880) 0 * Os_TE_588707 Os_TE_588707 Chr12 5049754 5049755 - ORSgTEMT00100531 325 0.5812 (1735/2985) 0 * Os_TE_588708 Os_TE_588694 Chr12 5041289 5041288 + HEARTBLEEDING 326 0.6916 (2018/2918) 0 * * Os_TE_588692 Chr12 5041260 5041259 + MPING 430 0.0011 (1/940) 0 * * Os_TE_588687 Chr12 5034609 5034423 + ORSgTEMT01400024 215 0.3242 (965/2977) 1 Intact Os_TE_588684 Os_TE_588684 Chr12 5034379 5034594 - ORSgTEMT01400023 211 0.3292 (985/2992) 1 Intact Os_TE_588687 Os_TE_588680 Chr12 5030439 5030440 + COPIA2-LTR_OS 6433 0.0010 (1/1045) 0 * Os_TE_588679 Os_TE_588679 Chr12 5030435 5030434 - COPIA2-LTR_OS 6433 0.0010 (1/1044) 0 * Os_TE_588680 Os_TE_588674 Chr12 5028780 5028781 - RIRE2_LTR 11306 0.0077 (23/2985) 0 * Os_TE_588673 Os_TE_588673 Chr12 5028776 5028775 - ORSgTERT00201216 11284 0.0077 (23/2986) 0 * Os_TE_588674 Os_TE_588665 Chr12 5021588 5020688 - CRATA-2 851 0.3319 (989/2980) 1 Intact Os_TE_588663 Os_TE_588663 Chr12 5020688 5021588 + CRATA-2 851 0.3241 (963/2971) 1 Intact Os_TE_588665 Os_TE_588652 Chr12 5017153 5017152 - SC-4_LTR 5218 0.0139 (41/2959) 0 * * Os_TE_588639 Chr12 5013289 5013290 + OsSN3 183 0.0139 (41/2947) 0 * * Os_TE_588629 Chr12 5003785 5003786 + TRUNCATOR 2918 0.0197 (24/1216) 0 * * Os_TE_588628 Chr12 5003262 5003261 + GYPSY-A_LTR 8951 0.0158 (19/1203) 0 * * Os_TE_588614 Chr12 4990416 4990415 - INDITTO 263 0.0428 (115/2687) 0 * * Os_TE_588526 Chr12 4960947 4960946 - TYPEH 309 0.0080 (24/2986) 0 * * Os_TE_588517 Chr12 4958712 4958713 - RETRO2_LTR 12874 0.6650 (1981/2979) 0 * Os_TE_588516 Os_TE_588516 Chr12 4958708 4958707 + RETRO2_LTR 12874 0.6672 (1973/2957) 0 * Os_TE_588517 Os_TE_588513 Chr12 4957127 4957128 + ORSiTERTOOT00034 791 0.0048 (14/2923) 0 * Os_TE_588512 Os_TE_588512 Chr12 4957123 4957122 - SZ-22_LTR 4403 0.0051 (15/2927) 0 * Os_TE_588513 Os_TE_588511 Chr12 4957097 4957096 + STOWAWAY20_OS 278 0.0020 (6/2929) 0 * * Os_TE_588506 Chr12 4956272 4956273 + CRM-LTR_OS 7749 0.0021 (6/2845) -1 * Os_TE_588505 Os_TE_588505 Chr12 4956268 4956267 - CRM-LTR_OS 7749 0.0021 (6/2835) -1 * Os_TE_588506 Os_TE_588502 Chr12 4955070 4955071 - SZ-62LTR 3649 0.0077 (23/2992) 0 * Os_TE_588501 Os_TE_588501 Chr12 4955066 4955065 + SZ-62LTR 3649 0.0073 (22/2994) 0 * Os_TE_588502 Os_TE_588497 Chr12 4952620 4952621 - ORSgTEMT00200185 144 0.0030 (9/2982) 0 * * Os_TE_588492 Chr12 4951653 4951654 + SC-4_LTR 5218 0.0003 (1/2969) 0 * Os_TE_588491 Os_TE_588491 Chr12 4951649 4951648 - SC-4_LTR 5218 0.0003 (1/2974) 0 * Os_TE_588492 Os_TE_588482 Chr12 4947711 4946498 - SZ-5LTR 1223 0.7427 (1039/1399) 1 Intact * Os_TE_588421 Chr12 4921160 4921159 + DNAUN1_OS 408 0.5635 (1668/2960) 0 * * Os_TE_588420 Chr12 4920419 4920420 - ORSgTEMT01602413 239 0.0175 (24/1373) 0 * * Os_TE_588397 Chr12 4912062 4912063 - LINE-6_OS 4886 0.0027 (8/2982) 0 * * Os_TE_588385 Chr12 4910571 4904106 + STOWAWAY49_OS 241 0.3314 (978/2951) 1 Intact Os_TE_588381 Os_TE_588381 Chr12 4904106 4910571 + STOWAWAY49_OS 241 0.3312 (983/2968) 1 Intact Os_TE_588385 Os_TE_588353 Chr12 4893107 4893106 + ORSgTEMT01700299 212 0.0027 (8/2971) 0 * * Os_TE_588349 Chr12 4889068 4889069 - GAIJIN 147 0.0040 (12/2982) 0 * * Os_TE_588340 Chr12 4886432 4886433 + WUWU 113 0.0037 (11/2987) 0 * Os_TE_588339 Os_TE_588339 Chr12 4886424 4886423 + WUWU 113 0.0033 (10/2987) 0 * Os_TE_588340 Os_TE_588325 Chr12 4879771 4879528 - STOWAWAY51_OS 246 0.3270 (927/2835) 1 Intact * Os_TE_588322 Chr12 4878674 4878673 + ORSgTEMT00100272 356 0.0041 (12/2898) 0 * Os_TE_588321 Os_TE_588321 Chr12 4878661 4878662 + NDNA1TNA_OS 334 0.0041 (12/2912) 0 * Os_TE_588322 Os_TE_588316 Chr12 4877922 4878162 + ORSgTEMT01601122 212 0.2907 (835/2872) 1 Intact * Os_TE_588311 Chr12 4875028 4875029 + ORSgTETNOOT01834 251 0.0033 (10/2991) 0 * Os_TE_588310 Os_TE_588310 Chr12 4875026 4875025 + ORSgTETNOOT01834 251 0.0033 (10/2995) 0 * Os_TE_588311 Os_TE_588305 Chr12 4870017 4870016 + STOWAWAY11_OS 292 0.0023 (7/2981) 0 * Os_TE_588304 Os_TE_588304 Chr12 4870015 4870016 - STOWAWAY11_OS 292 0.0023 (7/2981) 0 * Os_TE_588305 Os_TE_588302 Chr12 4868471 4868472 + ORSiTERTOOT00296 5553 0.0019 (5/2646) 0 * * Os_TE_588286 Chr12 4858649 4858650 - SC-3_LTR 5748 0.0100 (30/2992) 0 * Os_TE_588285 Os_TE_588285 Chr12 4858645 4858644 + ORSiTERTOOT00296 5553 0.0100 (30/2991) 0 * Os_TE_588286 Os_TE_588283 Chr12 4856942 4851244 + SC-3_LTR 5748 0.3174 (951/2996) 1 Intact Os_TE_588279 Os_TE_588279 Chr12 4851244 4856942 - SC-3_LTR 5748 0.3151 (944/2996) 1 Intact Os_TE_588283 Os_TE_588272 Chr12 4847292 4847293 - MDR2 6967 0.0667 (174/2607) 0 * Os_TE_588271 Os_TE_588271 Chr12 4847283 4847282 + MDR2 6967 0.0712 (165/2319) 0 * Os_TE_588272 Os_TE_588258 Chr12 4843656 4843655 - ORSgTETN00200001 10994 0.5768 (1578/2736) 0 * Os_TE_588257 Os_TE_588257 Chr12 4843655 4843656 + CACTA-B 1103 0.5803 (1634/2816) 0 * Os_TE_588258 Os_TE_588246 Chr12 4841015 4840138 - ORSgTERT00100363 6446 0.3026 (901/2978) 1 Intact * Os_TE_588243 Chr12 4837598 4837599 + COPI2_LTR 4733 0.0003 (1/2985) 0 * Os_TE_588242 Os_TE_588242 Chr12 4837594 4837593 - COPI2_LTR 4733 0.0003 (1/2985) 0 * Os_TE_588243 Os_TE_588200 Chr12 4817312 4817311 + RETROSAT4_LTR 13504 0.5757 (1707/2965) 0 * * Os_TE_588190 Chr12 4809991 4809992 + TRUNCATOR 2918 0.0063 (18/2879) 0 * * Os_TE_588174 Chr12 4801471 4801472 + ORSgTEMT01700280 164 0.0020 (6/2968) 0 * * Os_TE_588151 Chr12 4790489 4790488 + ORSgTEMT00101587 341 0.0035 (9/2603) 0 * * Os_TE_588111 Chr12 4778999 4778998 + TWIFB1 3737 0.4931 (1324/2685) 0 * * Os_TE_588102 Chr12 4768760 4768761 + SZ-39LTR 948 0.0003 (1/2949) 0 * * Os_TE_588101 Chr12 4767674 4767675 - ORSiTERTOOT00188 2195 0.5481 (1630/2974) 0 * * Os_TE_588067 Chr12 4749893 4749894 - SC-3_LTR 5748 0.0020 (6/2991) 0 * Os_TE_588066 Os_TE_588066 Chr12 4749889 4749888 + ORSiTERTOOT00296 5553 0.0017 (5/2994) 0 * Os_TE_588067 Os_TE_588045 Chr12 4744653 4744652 - COPIA2-LTR_OS 6433 0.0003 (1/2968) 0 * * Os_TE_588014 Chr12 4734081 4734080 - RETROSAT2LTR 12796 0.0370 (110/2970) 0 * * Os_TE_587999 Chr12 4726139 4726138 - TRUNCATOR2_LTR 2904 0.0366 (109/2979) 0 * * Os_TE_587963 Chr12 4713966 4713967 - MERMITEA 1710 0.0031 (9/2934) 0 * Os_TE_587962 Os_TE_587962 Chr12 4713958 4713957 - MERMITEA 1710 0.0034 (10/2946) 0 * Os_TE_587963 Os_TE_587961 Chr12 4713848 4713847 + MERMITEB 1610 0.0034 (10/2957) 0 * * Os_TE_587958 Chr12 4711056 4711057 + RIRE2_LTR 11306 0.0003 (1/2993) 0 * Os_TE_587957 Os_TE_587957 Chr12 4711052 4711051 - RIRE2_LTR 11306 0.0003 (1/2994) 0 * Os_TE_587958 Os_TE_587955 Chr12 4710197 4710196 + SPMLIKE 10989 0.0017 (5/2986) 0 * * Os_TE_587925 Chr12 4694587 4694586 - TYPEM 227 0.0024 (7/2973) 0 * * Os_TE_587916 Chr12 4690552 4690553 - INDITTO 263 0.0171 (51/2977) 0 * Os_TE_587915 Os_TE_587915 Chr12 4690550 4690549 + INDITTO 263 0.0178 (53/2975) 0 * Os_TE_587916 Os_TE_587910 Chr12 4689970 4689971 - OSTE33 1012 0.0034 (10/2974) 0 * * Os_TE_587899 Chr12 4688550 4688551 - RIRE2_LTR 11306 0.0003 (1/2988) 0 * * Os_TE_587837 Chr12 4663544 4663545 + CRM-LTR_OS 7749 0.0007 (2/2997) 0 * * Os_TE_587832 Chr12 4662730 4662729 + ORSgTEMT01701104 154 0.0037 (11/2962) 0 * Os_TE_587831 Os_TE_587831 Chr12 4662727 4662728 - ORSgTEMT01701104 154 0.0041 (12/2955) 0 * Os_TE_587832 Os_TE_587824 Chr12 4659580 4659579 - UNIQUE 158 0.0040 (12/2978) 0 * * Os_TE_587823 Chr12 4658810 4658811 + ORSgTETNOOT01998 254 0.0007 (2/2986) 0 * * Os_TE_587800 Chr12 4651196 4651195 + ORSgTEMT00100272 356 0.0034 (10/2955) 0 * * Os_TE_587789 Chr12 4647080 4647081 - SZ-22_LTR 4403 0.6247 (1851/2963) 0 * Os_TE_587788 Os_TE_587788 Chr12 4647078 4647077 + ORSiTERTOOT00034 791 0.6203 (1825/2942) 0 * Os_TE_587789 Os_TE_587778 Chr12 4641056 4641057 + TREP219 104 0.0022 (6/2774) 0 * * Os_TE_587767 Chr12 4633333 4633334 - AMYLTP 383 0.0007 (2/2971) 0 * Os_TE_587766 Os_TE_587766 Chr12 4633324 4633323 + AMYLTP 383 0.0007 (2/2959) 0 * Os_TE_587767 Os_TE_587728 Chr12 4623685 4623684 + ORSiTERTOOT00350 5275 0.0281 (37/1317) 0 * * Os_TE_587727 Chr12 4623285 4623286 + MPING 430 0.0007 (1/1335) 0 * Os_TE_587726 Os_TE_587726 Chr12 4623283 4623282 - MPING 430 0.0007 (1/1336) 0 * Os_TE_587727 Os_TE_587670 Chr12 4607709 4607708 + ORSgTEMT01602051 240 0.0025 (7/2822) 0 * Os_TE_587669 Os_TE_587669 Chr12 4607706 4607707 + ORSgTEMT01600402 237 0.0024 (7/2864) 0 * Os_TE_587670 Os_TE_587661 Chr12 4604264 4604265 - ORSgTEMT01600639 228 0.0017 (5/2980) 0 * * Os_TE_587659 Chr12 4603089 4603088 + CACTA-G1 797 0.0952 (283/2973) 0 * * Os_TE_587638 Chr12 4593496 4593495 - COPIA2-LTR_OS 6433 0.0140 (33/2360) 0 * * Os_TE_587630 Chr12 4589802 4589801 + ORSgTEMT01601934 207 0.0044 (12/2750) 0 * * Os_TE_587623 Chr12 4588394 4588395 - RIREX_LTR 8828 0.0013 (4/2968) 0 * Os_TE_587622 Os_TE_587622 Chr12 4588390 4588389 + RIREX_LTR 8828 0.0013 (4/2970) 0 * Os_TE_587623 Os_TE_587621 Chr12 4587862 4587861 + ORSgTETNOOT00670 249 0.0021 (6/2813) 0 * Os_TE_587620 Os_TE_587620 Chr12 4587849 4587850 + ORSgTETNOOT00670 249 0.0018 (5/2814) 0 * Os_TE_587621 Os_TE_587607 Chr12 4583213 4583212 + TRUNCATOR 2918 0.0020 (6/2957) 0 * * Os_TE_587604 Chr12 4582759 4582758 - ORSgTEMT01602170 250 0.0017 (5/2909) 0 * Os_TE_587603 Os_TE_587603 Chr12 4582758 4582759 - ORSgTEMT01602413 239 0.0017 (5/2942) 0 * Os_TE_587604 Os_TE_587600 Chr12 4581698 4581699 + SINE03_OS 360 0.0014 (4/2914) 0 * * Os_TE_587593 Chr12 4576067 4576068 - SZ-62LTR 3649 0.0014 (4/2946) 0 * Os_TE_587592 Os_TE_587592 Chr12 4576063 4576062 + SZ-62LTR 3649 0.0014 (4/2937) 0 * Os_TE_587593 Os_TE_587588 Chr12 4574427 4574426 - ORSgTEMT01800062 435 0.0007 (2/2974) 0 * * Os_TE_587587 Chr12 4574293 4574294 + EnSpm-13_OS 11171 0.0007 (2/2975) 0 * Os_TE_587586 Os_TE_587586 Chr12 4574291 4574290 - EnSpm-13_OS 11171 0.0007 (2/2971) 0 * Os_TE_587587 Os_TE_587585 Chr12 4574063 4574062 - ORSgTEMT01602413 239 0.0004 (1/2832) 0 * * Os_TE_587568 Chr12 4564312 4564311 + COPIA2-LTR_OS 6433 0.0004 (1/2797) 0 * * Os_TE_587566 Chr12 4564197 4564198 - MDR2 6967 0.0025 (7/2788) 0 * Os_TE_587565 Os_TE_587565 Chr12 4564189 4564188 - MDR2 6967 0.0025 (7/2797) 0 * Os_TE_587566 Os_TE_587562 Chr12 4563329 4563328 + SZ-20LTR 1395 0.0003 (1/2993) 0 * * Os_TE_587560 Chr12 4562773 4562774 - RETRO2_LTR 12874 0.0007 (2/2997) 0 * Os_TE_587559 Os_TE_587559 Chr12 4562769 4562768 + RETRO2_LTR 12874 0.0007 (2/2996) 0 * Os_TE_587560 Os_TE_587557 Chr12 4562711 4562712 - SZ-62LTR 3649 0.0020 (6/2995) 0 * Os_TE_587556 Os_TE_587556 Chr12 4562707 4562706 + SZ-62LTR 3649 0.0020 (6/2995) 0 * Os_TE_587557 Os_TE_587555 Chr12 4562519 4562518 - TRUNCATOR2_LTR 2904 0.0003 (1/2998) 0 * * Os_TE_587547 Chr12 4560405 4560196 - ORSgTEMT01400019 216 0.3165 (926/2926) 1 Intact Os_TE_587543 Os_TE_587543 Chr12 4560161 4560403 - ORSgTEMT01400038 210 0.3116 (930/2985) 1 Intact Os_TE_587547 Os_TE_587517 Chr12 4546014 4546013 + ORSgTETNOOT00908 242 0.0007 (2/2971) 0 * * Os_TE_587492 Chr12 4541029 4541030 - ORSiTERTOOT00074 4935 0.0004 (1/2790) 0 * Os_TE_587491 Os_TE_587491 Chr12 4541025 4541024 + ORSiTERTOOT00074 4935 0.0004 (1/2742) 0 * Os_TE_587492 Os_TE_587483 Chr12 4539346 4539345 - INDITTO 263 0.0119 (35/2949) 0 * * Os_TE_587474 Chr12 4537745 4537746 - ORSgTEMT00500675 140 0.0169 (48/2844) 0 * Os_TE_587473 Os_TE_587473 Chr12 4537743 4537742 - ORSgTEMT00501447 126 0.0169 (49/2903) 0 * Os_TE_587474 Os_TE_587468 Chr12 4536213 4536212 - SC-3_LTR 5748 0.0007 (2/2932) 0 * * Os_TE_587463 Chr12 4528492 4528493 - SUSU 279 0.0024 (7/2976) 0 * Os_TE_587462 Os_TE_587462 Chr12 4528490 4528489 + ORSgTEMT05000092 279 0.0020 (6/2975) 0 * Os_TE_587463 Os_TE_587460 Chr12 4528180 4528181 - COPIA2-LTR_OS 6433 0.0003 (1/2950) 0 * Os_TE_587459 Os_TE_587459 Chr12 4528176 4528175 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_587460 Os_TE_587444 Chr12 4519605 4519606 - ORSgTERT00201216 11284 0.0027 (8/2982) 0 * Os_TE_587443 Os_TE_587443 Chr12 4519601 4519600 - RIRE2_LTR 11306 0.0027 (8/2980) 0 * Os_TE_587444 Os_TE_587441 Chr12 4519499 4519500 + ORSiTERTOOT00226 792 0.0003 (1/2987) 0 * Os_TE_587440 Os_TE_587440 Chr12 4519495 4519494 - SZ-22_LTR 4403 0.0003 (1/2982) 0 * Os_TE_587441 Os_TE_587439 Chr12 4518981 4518982 + COPIA2-LTR_OS 6433 0.0007 (2/2933) 0 * Os_TE_587438 Os_TE_587438 Chr12 4518977 4518976 - COPIA2-LTR_OS 6433 0.0007 (2/2946) 0 * Os_TE_587439 Os_TE_587428 Chr12 4511770 4511771 - RIREX_LTR 8828 0.0007 (2/2992) 0 * Os_TE_587427 Os_TE_587427 Chr12 4511766 4511765 + RIREX_LTR 8828 0.0003 (1/2993) 0 * Os_TE_587428 Os_TE_587420 Chr12 4506484 4506483 - NDNA1TNA_OS 334 0.0796 (77/967) 0 * * Os_TE_587415 Chr12 4504175 4504176 + OsSN3 183 0.6930 (2063/2977) 0 * Os_TE_587414 Os_TE_587414 Chr12 4504158 4504157 - OsSN3 183 0.6878 (2036/2960) 0 * Os_TE_587415 Os_TE_587413 Chr12 4503323 4503324 - STOWAWAY8_OS 259 0.3245 (963/2968) 0.92 * * Os_TE_587411 Chr12 4501513 4501512 + AMYLTP 383 0.0007 (2/2965) 0 * * Os_TE_587401 Chr12 4498799 4498800 + ORSgTEMT05200196 285 0.7468 (2215/2966) 0 * Os_TE_587400 Os_TE_587400 Chr12 4498797 4498796 + YOUREN 286 0.7297 (2049/2808) 0 * Os_TE_587401 Os_TE_587396 Chr12 4498144 4498011 - ORSgTEMT00502171 134 0.3135 (807/2574) 1 Intact * Os_TE_587352 Chr12 4485906 4485907 - MPING 430 0.0003 (1/2986) 0 * Os_TE_587351 Os_TE_587351 Chr12 4485904 4485903 + MPING 430 0.0003 (1/2990) 0 * Os_TE_587352 Os_TE_587334 Chr12 4482396 4482395 + COPI2_LTR 4733 0.0003 (1/2979) 0 * * Os_TE_587321 Chr12 4475310 4475309 - ORSgTEMT01601768 238 0.0368 (110/2991) 0 * Os_TE_587320 Os_TE_587320 Chr12 4475307 4475308 - ORSgTEMT01601768 238 0.0379 (113/2985) 0 * Os_TE_587321 Os_TE_587309 Chr12 4466201 4466202 - MPING 430 0.0008 (1/1287) 0 * * Os_TE_587306 Chr12 4463279 4463280 + ORSgTETNOOT00908 242 0.0030 (9/2963) 0 * * Os_TE_587255 Chr12 4442046 4442045 + CACTA-H 1152 0.0408 (122/2991) 0 * Os_TE_587254 Os_TE_587254 Chr12 4442045 4442046 + ORSgTETN00200005 1121 0.0405 (121/2991) 0 * Os_TE_587255 Os_TE_587233 Chr12 4435823 4435824 + SPMLIKE 10989 0.0003 (1/2967) 0 * * Os_TE_587213 Chr12 4425920 4432740 + RIREX_LTR 8828 0.1115 (328/2942) 1 Intact * Os_TE_587205 Chr12 4424404 4424405 - STOWAWAY11_OS 292 0.8942 (2661/2976) 0 * Os_TE_587204 Os_TE_587204 Chr12 4424403 4424402 + STOWAWAY11_OS 292 0.3648 (197/540) 0 * Os_TE_587205 Os_TE_587186 Chr12 4422269 4422270 + ORSgTETNOOT00309 256 0.0004 (1/2839) 0 * Os_TE_587185 Os_TE_587185 Chr12 4422268 4422267 - ORSgTETNOOT01607 258 0.0004 (1/2857) 0 * Os_TE_587186 Os_TE_587181 Chr12 4420457 4420609 + ORSgTEMT01701101 133 0.1117 (334/2990) 1 Intact * Os_TE_587180 Chr12 4420253 4420254 + RIREX_LTR 8828 0.4436 (1322/2980) 0 * Os_TE_587179 Os_TE_587179 Chr12 4420249 4420248 - RIREX_LTR 8828 0.4463 (1331/2982) 0 * Os_TE_587180 Os_TE_587178 Chr12 4420193 4420194 - SZ-7A_LTR 11400 0.0050 (14/2816) 0 * Os_TE_587177 Os_TE_587177 Chr12 4420189 4420188 + ORSiTERTOOT00291 11421 0.0047 (14/2967) 0 * Os_TE_587178 Os_TE_587174 Chr12 4418741 4416431 - ORSgTEMT01602413 239 0.1117 (329/2945) 1 Intact * Os_TE_587162 Chr12 4414069 4414068 + NDNA1TNA_OS 334 0.0167 (45/2693) 0 * Os_TE_587161 Os_TE_587161 Chr12 4414068 4414069 + ORSgTEMT00101674 340 0.0186 (52/2794) 0 * Os_TE_587162 Os_TE_587160 Chr12 4413952 4413437 - XIKE 594 0.1142 (269/2356) 1 Intact Os_TE_587159 Os_TE_587159 Chr12 4413437 4413952 - XIKE 594 0.1026 (251/2446) 1 Intact Os_TE_587160 Os_TE_587158 Chr12 4413403 4413256 - STOWAWAY1_OS 149 0.1349 (281/2083) 1 Intact Os_TE_587157 Os_TE_587157 Chr12 4413252 4413400 + STOWAWAY1_OS 149 0.1121 (304/2711) 1 Intact Os_TE_587158 Os_TE_587142 Chr12 4406114 4406115 - CACTA-M 1129 0.0031 (4/1302) 0 * * Os_TE_587135 Chr12 4402024 4402023 + ORSiCMCM00100013 9728 0.0007 (1/1391) 0 * * Os_TE_587128 Chr12 4400541 4400542 - ORSgTEMT00502287 149 0.0006 (1/1546) 0 * * Os_TE_587126 Chr12 4400083 4400082 - SZ-9LTR 965 0.3413 (527/1544) 0 * * Os_TE_587123 Chr12 4396328 4396329 - TESSBIG 4057 0.0116 (5/430) 0 * Os_TE_587122 Os_TE_587122 Chr12 4396321 4396320 + TESSBIG 4057 0.0162 (7/433) 0 * Os_TE_587123 Os_TE_587121 Chr12 4396290 4396291 + TWIF 586 0.0023 (1/435) 0 * Os_TE_587120 Os_TE_587120 Chr12 4396283 4396282 - ORSiTETNOOT00134 607 0.0023 (1/437) 0 * Os_TE_587121 Os_TE_587107 Chr12 4388566 4388565 + TRUNCATOR2_LTR 2904 0.0093 (4/431) 0 * * Os_TE_587105 Chr12 4388291 4388290 - GYPSO_LTR 9828 0.0068 (12/1777) 0 * * Os_TE_586997 Chr12 4331317 4331318 - ORSgTETN00200001 10994 0.0070 (3/426) 0 * Os_TE_586996 Os_TE_586996 Chr12 4331315 4331314 + SPMLIKE 10989 0.0095 (4/423) 0 * Os_TE_586997 Os_TE_586957 Chr12 4304885 4303922 + COPIA2-LTR_OS 6433 0.8953 (325/363) 1 Solo_LTR * Os_TE_586854 Chr12 4257072 4257073 - ORSiTERT00200154 9386 0.0007 (1/1484) 0 * * Os_TE_586846 Chr12 4254790 4254791 + SC-10_LTR 4920 0.0005 (1/1982) 0 * * Os_TE_586845 Chr12 4254642 4254643 - COPI2_LTR 4733 0.0010 (2/1981) 0 * Os_TE_586844 Os_TE_586844 Chr12 4254638 4254637 + COPI2_LTR 4733 0.0010 (2/1984) 0 * Os_TE_586845 Os_TE_586843 Chr12 4254318 4254319 - SC-4_LTR 5218 0.0035 (7/1992) 0 * Os_TE_586842 Os_TE_586842 Chr12 4254314 4254313 + SC-4_LTR 5218 0.0035 (7/1988) 0 * Os_TE_586843 Os_TE_586840 Chr12 4254086 4254087 + RIRE2_LTR 11306 0.0005 (1/1996) 0 * Os_TE_586839 Os_TE_586839 Chr12 4254082 4254081 - RIRE2_LTR 11306 0.0005 (1/1998) 0 * Os_TE_586840 Os_TE_586825 Chr12 4248051 4248052 + SPMLIKE 10989 0.0031 (6/1952) 0 * Os_TE_586824 Os_TE_586824 Chr12 4248049 4248048 - ORSgTETN00200001 10994 0.0020 (4/1973) 0 * Os_TE_586825 Os_TE_586823 Chr12 4248007 4247761 - INDITTO 263 0.1613 (319/1978) 1 Intact Os_TE_586822 Os_TE_586822 Chr12 4247761 4248007 + INDITTO 263 0.1631 (323/1980) 1 Intact Os_TE_586823 Os_TE_586821 Chr12 4247019 4247020 - ORSiTERTOOT00398 5651 0.0020 (4/1977) 0 * Os_TE_586820 Os_TE_586820 Chr12 4247015 4247014 + ORSiTERTOOT00398 5651 0.0020 (4/1977) 0 * Os_TE_586821 Os_TE_586785 Chr12 4215134 4215135 + SC-8_LTR 4951 0.0003 (1/2969) 0 * Os_TE_586784 Os_TE_586784 Chr12 4215130 4215129 - SC-8_LTR 4951 0.0003 (1/2956) 0 * Os_TE_586785 Os_TE_586762 Chr12 4200286 4200287 + ORSiTERTOOT00296 5553 0.0003 (1/2986) 0 * * Os_TE_586752 Chr12 4190001 4190002 + OLO24 345 0.0003 (1/2986) 0 * * Os_TE_586746 Chr12 4187828 4187827 - ORSgTEMT01400014 209 0.0401 (118/2946) 0 * Os_TE_586745 Os_TE_586745 Chr12 4187824 4187825 - ORSgTEMT01400014 209 0.0338 (99/2929) 0 * Os_TE_586746 Os_TE_586731 Chr12 4184731 4184732 + ORSiTERTOOT00296 5553 0.0017 (5/2978) 0 * Os_TE_586730 Os_TE_586730 Chr12 4184727 4184726 - SC-3_LTR 5748 0.0017 (5/2976) 0 * Os_TE_586731 Os_TE_586729 Chr12 4184460 4184461 - SC-3_LTR 5748 0.0003 (1/2975) 0 * Os_TE_586728 Os_TE_586728 Chr12 4184456 4184455 + ORSiTERTOOT00296 5553 0.0003 (1/2979) 0 * Os_TE_586729 Os_TE_586725 Chr12 4183324 4183325 - HARB-1_OS 5166 0.0003 (1/2952) 0 * Os_TE_586724 Os_TE_586724 Chr12 4183322 4183321 + HARB-1_OS 5166 0.0003 (1/2976) 0 * Os_TE_586725 Os_TE_586723 Chr12 4182807 4182808 + NDNA1TNA_OS 334 0.0416 (124/2983) 0 * Os_TE_586722 Os_TE_586722 Chr12 4182805 4182804 - NDNA1TNA_OS 334 0.0412 (123/2988) 0 * Os_TE_586723 Os_TE_586717 Chr12 4177935 4177735 - ORSgTEMT02000063 217 0.7677 (2283/2974) 1 Intact * Os_TE_586707 Chr12 4175064 4175065 - ORSiTEMT01300001 950 0.1497 (448/2992) 0 * Os_TE_586706 Os_TE_586706 Chr12 4175059 4175058 + KRISPIE 956 0.1493 (445/2981) 0 * Os_TE_586707 Os_TE_586691 Chr12 4163541 4162120 - MERMITEB 1610 0.3483 (925/2656) 1 Intact Os_TE_586686 Os_TE_586686 Chr12 4162118 4163540 + MERMITEB 1610 0.3395 (916/2698) 1 Intact Os_TE_586691 Os_TE_586683 Chr12 4161401 4161199 + ORSgTEMT02400034 225 0.3242 (946/2918) 1 Intact Os_TE_586681 Os_TE_586681 Chr12 4161199 4161396 - ORSgTEMT02400148 214 0.3164 (935/2955) 1 Intact Os_TE_586683 Os_TE_586680 Chr12 4161152 4161151 - ORSgTEMT06000327 192 0.0003 (1/2882) 0 * * Os_TE_586679 Chr12 4160448 4160449 + COPIA2-LTR_OS 6433 0.0014 (4/2883) 0 * Os_TE_586678 Os_TE_586678 Chr12 4160444 4160443 - COPIA2-LTR_OS 6433 0.0013 (4/2966) 0 * Os_TE_586679 Os_TE_586677 Chr12 4160375 4160376 + SPMLIKE 10989 0.0020 (2/979) 0 * Os_TE_586676 Os_TE_586676 Chr12 4160373 4160372 - ORSgTETN00200001 10994 0.0007 (2/2757) 0 * Os_TE_586677 Os_TE_586674 Chr12 4160343 4160210 - ORSgTETNOOT00118 134 0.3326 (966/2904) 1 Intact Os_TE_586672 Os_TE_586672 Chr12 4160202 4160340 + ORSgTEMT00501356 145 0.3222 (959/2976) 1 Intact Os_TE_586674 Os_TE_586670 Chr12 4159402 4159164 - ORSgTEMT01602413 239 0.3123 (920/2946) 1 Intact Os_TE_586669 Os_TE_586669 Chr12 4159164 4159402 - ORSgTEMT01600507 239 0.3212 (948/2951) 1 Intact Os_TE_586670 Os_TE_586664 Chr12 4158624 4158625 + COPI2_LTR 4733 0.0003 (1/2968) 0 * * Os_TE_586657 Chr12 4156819 4156948 - ORSgTEMT00500026 147 0.3065 (893/2914) 1 Intact * Os_TE_586656 Chr12 4156583 4156341 - ORSgTEMT00901071 248 0.2681 (754/2812) 1 Intact * Os_TE_586648 Chr12 4155150 4154934 - ORSgTEMT01602088 230 0.3233 (919/2843) 1 Intact * Os_TE_586630 Chr12 4153700 4153560 + ORSgTEMT00500002 133 0.8834 (2628/2975) 1 Intact * Os_TE_586628 Chr12 4153555 4153697 + ORSgTEMT00502094 140 0.2106 (594/2820) 1 Intact * Os_TE_586626 Chr12 4151716 4151715 - ORSgTEMT02400179 221 0.0348 (103/2961) 0 * Os_TE_586625 Os_TE_586625 Chr12 4151714 4151715 - TYPEM 227 0.0407 (122/2994) 0 * Os_TE_586626 Os_TE_586605 Chr12 4150162 4150163 + ORSgTEMT00500476 150 0.0017 (5/2969) 0 * * Os_TE_586603 Chr12 4148892 4148891 + SEVERIN-2 1952 0.0017 (5/2946) 0 * * Os_TE_586600 Chr12 4147793 4147792 - NDNA1TNA_OS 334 0.0171 (51/2980) 0 * * Os_TE_586587 Chr12 4144522 4144523 + ORSgTETNOOT00908 242 0.0555 (164/2953) 0 * * Os_TE_586584 Chr12 4144086 4144087 - NDNA1TNA_OS 334 0.0004 (1/2754) 0 * * Os_TE_586583 Chr12 4144054 4144055 - NDNA1TNA_OS 334 0.6440 (1894/2941) 0 * Os_TE_586582 Os_TE_586582 Chr12 4144051 4144050 + NDNA1TNA_OS 334 0.6506 (1940/2982) 0 * Os_TE_586583 Os_TE_586581 Chr12 4143898 4143897 - ORSgTEMT01600152 226 0.0181 (54/2980) 0 * Os_TE_586580 Os_TE_586580 Chr12 4143895 4143896 - ORSgTEMT01601432 239 0.0179 (53/2963) 0 * Os_TE_586581 Os_TE_586575 Chr12 4142907 4142908 - ORSgTEMT01601834 234 0.0013 (4/2985) 0 * * Os_TE_586573 Chr12 4142720 4142721 - ORSgTEMT01600520 239 0.0020 (6/2961) 0 * * Os_TE_586572 Chr12 4142399 4142398 - ORSgTEMT03000025 382 0.0017 (5/2952) 0 * * Os_TE_586569 Chr12 4141308 4141309 + SPMLIKE 10989 0.6483 (1810/2792) 0 * Os_TE_586568 Os_TE_586568 Chr12 4141307 4141306 - ORSgTETN00200001 10994 0.6657 (1804/2710) 0 * Os_TE_586569 Os_TE_586567 Chr12 4140092 4140093 - RETROSAT3_LTR 11537 0.0405 (83/2048) 0 * * Os_TE_586566 Chr12 4140088 4140087 + RETROSAT2LTR 12796 0.0005 (1/2017) 0 * * Os_TE_586561 Chr12 4138137 4138136 + MDR2 6967 0.0132 (39/2961) 0 * * Os_TE_586549 Chr12 4126299 4137292 + CACTA-B 1103 0.2995 (893/2982) 1 Intact * Os_TE_586548 Chr12 4125842 4125843 - COPI2_LTR 4733 0.0345 (91/2640) 0 * * Os_TE_586545 Chr12 4124991 4124990 + TREP215 239 0.6937 (2000/2883) 0 * Os_TE_586544 Os_TE_586544 Chr12 4124985 4124986 - TREP215 239 0.7032 (2083/2962) 0 * Os_TE_586545 Os_TE_586536 Chr12 4120296 4120297 - CASTAWAY 364 0.0030 (9/2971) 0 * Os_TE_586535 Os_TE_586535 Chr12 4120293 4120292 - ORSgTEMT00600304 361 0.0037 (11/2984) 0 * Os_TE_586536 Os_TE_586524 Chr12 4119416 4119417 - STOWAWAY44_OS 240 0.0003 (1/2987) 0 * * Os_TE_586522 Chr12 4119080 4119081 + RIREX_LTR 8828 0.0014 (4/2960) 0 * * Os_TE_586518 Chr12 4117710 4117711 + MDR2 6967 0.0022 (6/2740) 0 * Os_TE_586517 Os_TE_586517 Chr12 4117700 4117699 + MDR2 6967 0.0022 (6/2748) 0 * Os_TE_586518 Os_TE_586494 Chr12 4109188 4109187 - ORSgTEMT00901345 248 0.0003 (1/2926) 0 * * Os_TE_586493 Chr12 4109063 4109064 - INDITTO 263 0.1009 (297/2943) 0 * Os_TE_586492 Os_TE_586492 Chr12 4109061 4109060 + INDITTO 263 0.1000 (294/2940) 0 * Os_TE_586493 Os_TE_586471 Chr12 4104809 4104808 - ORSiTERTOOT00332 5395 0.0010 (3/2905) 0 * * Os_TE_586466 Chr12 4102047 4102046 + RETRO2_LTR 12874 0.0283 (83/2932) 0 * * Os_TE_586446 Chr12 4089639 4089640 - RIRE3_LTR 12054 0.3305 (506/1531) 0 * Os_TE_586445 Os_TE_586445 Chr12 4089635 4089634 + RIRE3_LTR 12054 0.3318 (506/1525) 0 * Os_TE_586446 Os_TE_586442 Chr12 4088761 4088760 + TESS 244 0.0037 (5/1336) 0 * * Os_TE_586432 Chr12 4079590 4079591 + CACTA-M 1129 0.3206 (486/1516) 0 * * Os_TE_586397 Chr12 4062953 4062952 - OSTE18 129 0.3443 (511/1484) 0 * Os_TE_586396 Os_TE_586396 Chr12 4062949 4062950 + OSTE18 129 0.3499 (520/1486) 0 * Os_TE_586397 Os_TE_586393 Chr12 4059355 4059354 + TELIA 141 0.0003 (1/2919) 0 * * Os_TE_586354 Chr12 4031688 4031689 - ORSgTEMT00901345 248 0.6886 (1506/2187) 0 * * Os_TE_586353 Chr12 4029372 4029373 - OSTONOR1_LTR 6440 0.0003 (1/2999) 0 * * Os_TE_586350 Chr12 4028265 4028266 - MuDR4_OS 7610 0.0010 (3/2978) 0 * Os_TE_586349 Os_TE_586349 Chr12 4028256 4028255 - MuDR4_OS 7610 0.0010 (3/2975) 0 * Os_TE_586350 Os_TE_586343 Chr12 4026303 4026302 - SZ-40LTR 2465 0.0012 (1/836) 0 * * Os_TE_586318 Chr12 4009432 4009433 - COPIA2-LTR_OS 6433 0.0011 (1/913) 0 * Os_TE_586317 Os_TE_586317 Chr12 4009428 4009427 + COPIA2-LTR_OS 6433 0.0011 (1/910) 0 * Os_TE_586318 Os_TE_586313 Chr12 4006079 4006078 + ORSgTEMT01601564 233 0.0022 (2/913) 0 * * Os_TE_586309 Chr12 4001029 4001030 - ORSgTEMT02400179 221 0.0257 (77/2999) 0 * Os_TE_586308 Os_TE_586308 Chr12 4001028 4001027 - TYPEM 227 0.0252 (75/2976) 0 * Os_TE_586309 Os_TE_586300 Chr12 3995499 3995500 + RETRO2_LTR 12874 0.0024 (7/2917) 0 * * Os_TE_586297 Chr12 3995445 3995444 + ORSgTEMT01700632 122 0.6899 (2029/2941) 0 * Os_TE_586296 Os_TE_586296 Chr12 3995444 3995445 + STOWAWAY1_OS 149 0.4710 (854/1813) 0 * Os_TE_586297 Os_TE_586295 Chr12 3995311 3995312 - DNAUN1_OS 408 0.5723 (1266/2212) 0 * * Os_TE_586285 Chr12 3983029 3983028 + CACTA-B 1103 0.0067 (20/2966) 0 * * Os_TE_586253 Chr12 3965343 3965342 + INDITTO 263 0.0928 (276/2975) 0 * * Os_TE_586252 Chr12 3965335 3965336 - INDITTO 263 0.0911 (272/2987) 0 * Os_TE_586251 Os_TE_586251 Chr12 3965334 3965333 - ORSgTETNOOT02044 254 0.0921 (275/2985) 0 * Os_TE_586252 Os_TE_586248 Chr12 3965129 3965128 + HARB-1_OS 5166 0.0003 (1/2981) 0 * * Os_TE_586247 Chr12 3964961 3964962 - ORSgTEMT00700002 381 0.0003 (1/2989) 0 * * Os_TE_586239 Chr12 3963979 3963980 - MIDWAY 985 0.7098 (1781/2509) 0 * * Os_TE_586212 Chr12 3949875 3949876 + ORSgTETNOOT01998 254 0.5873 (1688/2874) 0 * Os_TE_586211 Os_TE_586211 Chr12 3949873 3949872 - ORSgTETNOOT00754 253 0.5994 (1749/2918) 0 * Os_TE_586212 Os_TE_586201 Chr12 3947977 3947976 + F770 284 0.0385 (115/2986) 0 * * Os_TE_586196 Chr12 3945688 3945689 + ORSiTERTOOT00220 2703 0.0003 (1/2881) 0 * * Os_TE_586182 Chr12 3942528 3942529 - SC-3_LTR 5748 0.0023 (7/2991) 0 * Os_TE_586181 Os_TE_586181 Chr12 3942524 3942523 + ORSiTERTOOT00296 5553 0.0023 (7/2997) 0 * Os_TE_586182 Os_TE_586180 Chr12 3942388 3942389 - SC-8_LTR 4951 0.0003 (1/2996) 0 * Os_TE_586179 Os_TE_586179 Chr12 3942384 3942383 + ORSiTERTOOT00381 4988 0.0003 (1/2995) 0 * Os_TE_586180 Os_TE_586156 Chr12 3929191 3929190 + ORSgTETNOOT00032 218 0.0098 (29/2954) 0 * * Os_TE_586151 Chr12 3927056 3927057 + COPIA2-LTR_OS 6433 0.0032 (3/942) 0 * Os_TE_586150 Os_TE_586150 Chr12 3927052 3927051 - COPIA2-LTR_OS 6433 0.0032 (3/929) 0 * Os_TE_586151 Os_TE_586142 Chr12 3921614 3921615 - GYPSY-A_LTR 8951 0.0033 (3/899) 0 * Os_TE_586141 Os_TE_586141 Chr12 3921610 3921609 + GYPSY-A_LTR 8951 0.0033 (3/897) 0 * Os_TE_586142 Os_TE_586136 Chr12 3916297 3915607 + BAJIELTR 4500 0.3763 (879/2336) 1 Solo_LTR Os_TE_586133 Os_TE_586133 Chr12 3915607 3916297 - BAJIELTR 4500 0.3427 (876/2556) 1 Solo_LTR Os_TE_586136 Os_TE_586122 Chr12 3903910 3903911 - SC-6_LTR 6317 0.0019 (4/2090) 0 * * Os_TE_586108 Chr12 3891082 3902318 - RETROSAT4_LTR 13504 0.3356 (856/2551) 1 Intact * Os_TE_586104 Chr12 3890730 3890939 - WANDERER 232 0.2953 (736/2492) 1 Intact * Os_TE_586096 Chr12 3888725 3888726 + ORSgTETNOOT01791 245 0.7128 (2117/2970) 0 * * Os_TE_586084 Chr12 3880913 3880914 - SC-8_LTR 4951 0.0003 (1/2971) 0 * Os_TE_586083 Os_TE_586083 Chr12 3880909 3880908 + SC-8_LTR 4951 0.0003 (1/2971) 0 * Os_TE_586084 Os_TE_586078 Chr12 3877773 3877772 + CASTAWAY 364 0.0114 (34/2981) 0 * * Os_TE_586074 Chr12 3874773 3874774 - SC-8_LTR 4951 0.0010 (3/2991) 0 * Os_TE_586073 Os_TE_586073 Chr12 3874769 3874768 + SC-8_LTR 4951 0.0013 (4/2991) 0 * Os_TE_586074 Os_TE_586071 Chr12 3874029 3874030 + F569 228 0.0054 (16/2990) 0 * Os_TE_586070 Os_TE_586070 Chr12 3874027 3874026 - F569 228 0.0054 (16/2983) 0 * Os_TE_586071 Os_TE_586057 Chr12 3870902 3870753 - ORSgTEMT01701348 105 0.2929 (878/2998) 1 Intact Os_TE_586055 Os_TE_586055 Chr12 3870741 3870895 - ORSgTEMT01701624 178 0.2955 (884/2992) 1 Intact Os_TE_586057 Os_TE_586053 Chr12 3869262 3869263 - SC-3_LTR 5748 0.0003 (1/2995) 0 * Os_TE_586052 Os_TE_586052 Chr12 3869258 3869257 + ORSiTERTOOT00296 5553 0.0003 (1/2995) 0 * Os_TE_586053 Os_TE_586036 Chr12 3860930 3860931 - MuDR4_OS 7610 0.0047 (14/2994) 0 * * Os_TE_586030 Chr12 3855136 3855135 - SINE03_OS 360 0.6487 (1928/2972) 0 * * Os_TE_586012 Chr12 3851379 3851380 - SC-3_LTR 5748 0.0013 (4/2981) 0 * Os_TE_586011 Os_TE_586011 Chr12 3851375 3851374 + ORSiTERTOOT00296 5553 0.0013 (4/2983) 0 * Os_TE_586012 Os_TE_585997 Chr12 3845628 3845627 - EnSpm-15_OS 8871 0.0158 (47/2971) 0 * * Os_TE_585990 Chr12 3843644 3843643 + EnSpm-13_OS 11171 0.0003 (1/2939) 0 * * Os_TE_585978 Chr12 3839370 3839371 - INDITTO 263 0.0148 (44/2977) 0 * * Os_TE_585955 Chr12 3828405 3828406 - TNR2A 152 0.0792 (237/2994) 0 * * Os_TE_585954 Chr12 3828370 3828369 + ORSgTEMT01601591 242 0.0007 (2/2985) 0 * Os_TE_585953 Os_TE_585953 Chr12 3828367 3828368 + ORSgTEMT01601591 242 0.0007 (2/2994) 0 * Os_TE_585954 Os_TE_585948 Chr12 3821686 3827123 + SZ-48LTR 3632 0.8810 (2547/2891) 1 Intact * Os_TE_585907 Chr12 3804154 3804155 + SPMLIKE 10989 0.0050 (14/2792) 0 * Os_TE_585906 Os_TE_585906 Chr12 3804152 3804151 - ORSgTETN00200001 10994 0.0011 (3/2754) 0 * Os_TE_585907 Os_TE_585840 Chr12 3779804 3779805 - CACTA-M 1129 0.0003 (1/2974) 0 * * Os_TE_585811 Chr12 3770407 3770406 - ORSgTERT00200351 477 0.0003 (1/2975) 0 * * Os_TE_585804 Chr12 3769266 3769267 + ORSgTEMT00500476 150 0.6565 (1875/2856) 0 * * Os_TE_585799 Chr12 3767569 3767570 - ORSgTEMT01602170 250 0.0003 (1/2900) 0 * * Os_TE_585785 Chr12 3765879 3765878 + ORSgTEMT01601122 212 0.0222 (55/2479) 0 * Os_TE_585784 Os_TE_585784 Chr12 3765876 3765877 + ORSgTEMT01601122 212 0.0310 (76/2455) 0 * Os_TE_585785 Os_TE_585741 Chr12 3752576 3752577 - OSTE20 496 0.0039 (4/1016) 0 * Os_TE_585740 Os_TE_585740 Chr12 3752572 3752571 - OSTE20 496 0.0030 (3/1011) 0 * Os_TE_585741 Os_TE_585739 Chr12 3751892 3751891 - STOWAWAY51_OS 246 0.0010 (1/1012) 0 * Os_TE_585738 Os_TE_585738 Chr12 3751886 3751887 + STOWAWAY51_OS 246 0.0003 (1/2967) 0 * Os_TE_585739 Os_TE_585734 Chr12 3751101 3751100 - ORSgTEMT00900099 250 0.6426 (1746/2717) 0 * * Os_TE_585730 Chr12 3750541 3750296 + ORSgTEMT01400032 215 0.3512 (971/2765) 1 Intact Os_TE_585727 Os_TE_585727 Chr12 3750293 3750504 - ORSgTEMT01400015 213 0.3330 (991/2976) 1 Intact Os_TE_585730 Os_TE_585686 Chr12 3726238 3725879 + ORSiTEMT06300001 333 0.3527 (1001/2838) 1 Intact * Os_TE_585682 Chr12 3725602 3725603 + ORSgTEMT00100315 323 0.6600 (1891/2865) 0 * * Os_TE_585681 Chr12 3725522 3725521 + TREP220 109 0.6726 (1987/2954) 0 * Os_TE_585680 Os_TE_585680 Chr12 3725519 3725520 + TREP220 109 0.5154 (1052/2041) 0 * Os_TE_585681 Os_TE_585663 Chr12 3718035 3718034 + ORSiTERTOOT00074 4935 0.0020 (6/2995) 0 * * Os_TE_585650 Chr12 3714343 3714342 - STOWAWAY51_OS 246 0.0003 (1/2972) 0 * * Os_TE_585646 Chr12 3712421 3712422 - RIREX_LTR 8828 0.0010 (3/2928) 0 * Os_TE_585645 Os_TE_585645 Chr12 3712417 3712416 + RIREX_LTR 8828 0.0010 (3/2911) 0 * Os_TE_585646 Os_TE_585639 Chr12 3710595 3710596 - MERMITEA 1710 0.0007 (1/1435) -1 * * Os_TE_585636 Chr12 3709584 3709583 + ORSgTEMT01400031 216 0.0042 (1/236) 0 * * Os_TE_585635 Chr12 3709495 3709496 + COPI2_LTR 4733 0.0220 (59/2681) 0 * Os_TE_585634 Os_TE_585634 Chr12 3709491 3709490 - COPI2_LTR 4733 0.0039 (10/2581) 0 * Os_TE_585635 Os_TE_585620 Chr12 3705145 3705146 - NDNA1TNA_OS 334 0.1237 (368/2976) 0 * Os_TE_585619 Os_TE_585619 Chr12 3705141 3705140 + NDNA1TNA_OS 334 0.1151 (340/2953) 0 * Os_TE_585620 Os_TE_585613 Chr12 3699655 3699460 - TESS 244 0.3166 (902/2849) 1 Intact Os_TE_585612 Os_TE_585612 Chr12 3699460 3699655 - ORSgTETNOOT02130 218 0.3055 (859/2812) 1 Intact Os_TE_585613 Os_TE_585605 Chr12 3697468 3697243 - ORSgTEMT02400179 221 0.3164 (886/2800) 1 Intact Os_TE_585604 Os_TE_585604 Chr12 3697241 3697462 + ORSgTEMT02400041 225 0.3448 (971/2816) 1 Intact Os_TE_585605 Os_TE_585599 Chr12 3695102 3695103 + ORSgTEMT00600124 361 0.0027 (8/2971) 0 * Os_TE_585598 Os_TE_585598 Chr12 3695101 3695100 - ORSgTEMT00600304 361 0.0027 (8/2981) 0 * Os_TE_585599 Os_TE_585584 Chr12 3693431 3693430 + STOWAWAY51_OS 246 0.0003 (1/2982) 0 * * Os_TE_585565 Chr12 3690670 3690671 - OSTE20 496 0.0010 (3/2952) 0 * Os_TE_585564 Os_TE_585564 Chr12 3690666 3690665 - OSTE20 496 0.0020 (6/2957) 0 * Os_TE_585565 Os_TE_585556 Chr12 3689697 3689698 - F524 291 0.0027 (8/2932) 0 * * Os_TE_585546 Chr12 3686658 3686659 - GAIJIN 147 0.0023 (7/2989) 0 * Os_TE_585545 Os_TE_585545 Chr12 3686657 3686656 + ORSgTEMT00500411 151 0.0027 (8/2992) 0 * Os_TE_585546 Os_TE_585537 Chr12 3682262 3682261 - AMYLTP 383 0.0030 (8/2708) 0 * * Os_TE_585530 Chr12 3680697 3680696 + ORSgTEMT00502215 139 0.0027 (8/2970) 0 * Os_TE_585529 Os_TE_585529 Chr12 3680691 3680692 + ORSgTEMT00501411 147 0.0027 (8/2948) 0 * Os_TE_585530 Os_TE_585515 Chr12 3670640 3670641 - MPING 430 0.0003 (1/2965) 0 * Os_TE_585514 Os_TE_585514 Chr12 3670638 3670637 + MPING 430 0.0003 (1/2958) 0 * Os_TE_585515 Os_TE_585509 Chr12 3668940 3668939 - GYPSY-A_LTR 8951 0.0020 (2/1025) 0 * * Os_TE_585507 Chr12 3668489 3668119 + AMYLTP 383 0.4119 (1221/2964) 1 Intact Os_TE_585506 Os_TE_585506 Chr12 3668119 3668488 - AMYLTP 383 0.4062 (1197/2947) 1 Intact Os_TE_585507 Os_TE_585482 Chr12 3657852 3657853 - RETROSAT2LTR 12796 0.0441 (131/2968) 0 * * Os_TE_585464 Chr12 3646707 3647025 + Cassandra_OS-LTR 764 0.1422 (420/2954) 1 Solo_LTR * Os_TE_585462 Chr12 3642253 3642252 - ORSiTERTOOT00123 1836 0.0003 (1/2954) 0 * * Os_TE_585448 Chr12 3637027 3637028 + OSTONOR1_LTR 6440 0.0873 (259/2968) 0 * Os_TE_585447 Os_TE_585447 Chr12 3637023 3637022 - OSTONOR1_LTR 6440 0.0868 (257/2961) 0 * Os_TE_585448 Os_TE_585424 Chr12 3629297 3629296 - RETRO2A_LTR 12895 0.0051 (15/2964) 0 * * Os_TE_585423 Chr12 3628816 3628817 - ORSgTEMT00502442 148 0.0023 (7/2996) 0 * Os_TE_585422 Os_TE_585422 Chr12 3628814 3628813 - GAIJIN 147 0.0027 (8/2981) 0 * Os_TE_585423 Os_TE_585410 Chr12 3619300 3619301 + TWIFBIG 3567 0.0066 (15/2278) 0 * * Os_TE_585408 Chr12 3619274 3619273 - MuDR3_OS 8604 0.6391 (1799/2815) 0 * * Os_TE_585406 Chr12 3618597 3618598 - MuDR3_OS 8604 0.6291 (1742/2769) 0 * * Os_TE_585402 Chr12 3615646 3615647 - AMYLTP 383 0.0054 (6/1113) -1 * * Os_TE_585384 Chr12 3610944 3610943 - MPING 430 0.0007 (2/2894) 0 * * Os_TE_585370 Chr12 3605664 3605663 + ORSgTEMT01602669 216 0.0070 (21/2985) 0 * * Os_TE_585350 Chr12 3602975 3602974 - ORSgTEMT01601208 238 0.0013 (4/2978) 0 * Os_TE_585349 Os_TE_585349 Chr12 3602972 3602973 - ORSgTEMT01600639 228 0.0013 (4/2970) 0 * Os_TE_585350 Os_TE_585344 Chr12 3601499 3601500 - RIREX_LTR 8828 0.0007 (2/2971) 0 * Os_TE_585343 Os_TE_585343 Chr12 3601495 3601494 + RIREX_LTR 8828 0.0007 (2/2965) 0 * Os_TE_585344 Os_TE_585329 Chr12 3599672 3599927 - SUSU 279 0.3744 (1092/2917) 1 Intact * Os_TE_585328 Chr12 3599300 3598847 - OSTE30 529 0.3647 (1075/2948) 1 Intact * Os_TE_585320 Chr12 3597828 3597564 + ORSgTETNOOT02316 263 0.8819 (1090/1236) 1 Intact Os_TE_585319 Os_TE_585319 Chr12 3597564 3597828 - INDITTO 263 0.3612 (1075/2976) 1 Intact Os_TE_585320 Os_TE_585317 Chr12 3596881 3596882 - AMYLTP 383 0.0010 (3/2966) 0 * Os_TE_585316 Os_TE_585316 Chr12 3596873 3596872 + AMYLTP 383 0.0007 (2/2977) 0 * Os_TE_585317 Os_TE_585305 Chr12 3586201 3586200 - SC-3_LTR 5748 0.0003 (1/2984) 0 * * Os_TE_585295 Chr12 3582899 3582898 + STOWAWAY1_OS 149 0.6079 (1752/2882) 0 * Os_TE_585294 Os_TE_585294 Chr12 3582885 3582886 + ORSgTEMT01701015 166 0.6276 (1724/2747) 0 * Os_TE_585295 Os_TE_585292 Chr12 3581069 3581068 + ORSgTEMT01602181 239 0.0007 (2/2985) 0 * * Os_TE_585291 Chr12 3580429 3580428 - COPI2_LTR 4733 0.0003 (1/2994) 0 * * Os_TE_585286 Chr12 3577821 3577820 + COPI2_LTR 4733 0.0003 (1/2991) 0 * * Os_TE_585266 Chr12 3563862 3563861 - RETROSAT3_LTR 11537 0.0013 (3/2297) 0 * * Os_TE_585261 Chr12 3562741 3562740 + SZ-62LTR 3649 0.0003 (1/2992) 0 * * Os_TE_585260 Chr12 3562545 3562544 + SZ-44LTR 1408 0.0003 (1/2985) 0 * * Os_TE_585227 Chr12 3553164 3553165 + COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_585226 Os_TE_585226 Chr12 3553160 3553159 - COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_585227 Os_TE_585223 Chr12 3551215 3551216 + ORSiTERTOOT00296 5553 0.0037 (11/2994) 0 * * Os_TE_585192 Chr12 3544503 3544502 - ORSgTEMT01601208 238 0.0023 (7/2980) 0 * * Os_TE_585191 Chr12 3543629 3543630 + RIREX_LTR 8828 0.0007 (2/2990) 0 * * Os_TE_585189 Chr12 3543471 3543470 + MDM2 312 0.0024 (7/2970) 0 * * Os_TE_585165 Chr12 3537800 3537801 + CASTAWAY-3 314 0.0024 (7/2953) 0 * * Os_TE_585164 Chr12 3536928 3536927 - ORSgTEMT00502258 148 0.0025 (7/2784) 0 * Os_TE_585163 Os_TE_585163 Chr12 3536922 3536923 + ORSgTEMT00500491 152 0.0022 (6/2771) 0 * Os_TE_585164 Os_TE_585158 Chr12 3536476 3536477 + MPING 430 0.0004 (1/2422) 0 * * Os_TE_585152 Chr12 3532408 3532409 + ORSiTERTOOT00296 5553 0.0003 (1/2996) 0 * * Os_TE_585141 Chr12 3529342 3529343 - MUDRN2_OS 756 0.0776 (231/2975) 0 * Os_TE_585140 Os_TE_585140 Chr12 3529334 3529333 + MUDRN2_OS 756 0.0762 (227/2979) 0 * Os_TE_585141 Os_TE_585139 Chr12 3529167 3529168 + RIRE3_LTR 12054 0.0013 (4/2975) 0 * Os_TE_585138 Os_TE_585138 Chr12 3529163 3529162 - RIRE3_LTR 12054 0.0013 (4/2978) 0 * Os_TE_585139 Os_TE_585137 Chr12 3528804 3528803 + RIRE2_LTR 11306 0.0013 (4/2969) 0 * * Os_TE_585135 Chr12 3528560 3528559 + DITAILA 257 0.0020 (6/2976) 0 * * Os_TE_585134 Chr12 3528152 3528151 - ORSgTEMT00901723 248 0.0091 (8/883) 0 * * Os_TE_585076 Chr12 3484040 3484041 - TEMPINDAS 4259 0.0007 (2/2994) 0 * * Os_TE_585067 Chr12 3480048 3480049 + COPI1_LTR 4721 0.0023 (7/2997) 0 * Os_TE_585066 Os_TE_585066 Chr12 3480044 3480043 - COPI1_LTR 4721 0.0023 (7/2994) 0 * Os_TE_585067 Os_TE_584994 Chr12 3457049 3457048 + F770 284 0.0010 (3/2976) 0 * * Os_TE_584984 Chr12 3454686 3454687 + ORSiCMCM00100019 2717 0.0245 (73/2984) 0 * Os_TE_584983 Os_TE_584983 Chr12 3454682 3454681 - TRUNCATOR2_LTR 2904 0.0264 (79/2990) 0 * Os_TE_584984 Os_TE_584967 Chr12 3446779 3446780 - COPI2_LTR 4733 0.0003 (1/2921) 0 * Os_TE_584966 Os_TE_584966 Chr12 3446775 3446774 + COPI2_LTR 4733 0.0004 (1/2834) 0 * Os_TE_584967 Os_TE_584963 Chr12 3445513 3445514 + TELIA 141 0.4000 (1154/2885) 0 * Os_TE_584962 Os_TE_584962 Chr12 3445505 3445504 - TELIA 141 0.3988 (1165/2921) 0 * Os_TE_584963 Os_TE_584961 Chr12 3445431 3445306 + ORSgTEMT01702111 154 0.7725 (2204/2853) 1 Intact Os_TE_584960 Os_TE_584960 Chr12 3445306 3445428 + ORSgTEMT01700759 147 0.7726 (2201/2849) 1 Intact Os_TE_584961 Os_TE_584959 Chr12 3445252 3445015 + ORSgTEMT01602181 239 0.7645 (2178/2849) 1 Intact Os_TE_584957 Os_TE_584957 Chr12 3445013 3445252 - ORSgTEMT01601432 239 0.7698 (2241/2911) 1 Intact Os_TE_584959 Os_TE_584954 Chr12 3443707 3443453 + ORSgTETNOOT01583 259 0.7761 (2281/2939) 1 Intact Os_TE_584951 Os_TE_584951 Chr12 3443453 3443707 + STOWAWAY17_OS 259 0.7621 (2204/2892) 1 Intact Os_TE_584954 Os_TE_584950 Chr12 3443360 3443361 + ORSgTEMT00500498 155 0.2520 (729/2893) 0 * Os_TE_584949 Os_TE_584949 Chr12 3443359 3443358 + ORSgTEMT00501329 143 0.2569 (745/2900) 0 * Os_TE_584950 Os_TE_584944 Chr12 3441919 3441920 + ORSgTEMT01601122 212 0.2137 (610/2854) 0 * * Os_TE_584943 Chr12 3441726 3441725 - COPIA2-LTR_OS 6433 0.0003 (1/2930) 0 * * Os_TE_584941 Chr12 3441029 3441030 - AMYLTP 383 0.0007 (2/2981) 0 * Os_TE_584940 Os_TE_584940 Chr12 3441021 3441020 + AMYLTP 383 0.0007 (2/2980) 0 * Os_TE_584941 Os_TE_584936 Chr12 3440202 3440203 - ORSgTEMT01700785 162 0.2436 (641/2631) 0 * * Os_TE_584935 Chr12 3439111 3439112 - TESS 244 0.0026 (5/1888) 0 * Os_TE_584934 Os_TE_584934 Chr12 3439104 3439103 + TESS 244 0.0017 (5/2982) 0 * Os_TE_584935 Os_TE_584931 Chr12 3438403 3438402 - COPIA2-LTR_OS 6433 0.0007 (1/1487) 0 * * Os_TE_584927 Chr12 3436934 3436935 + ORSgTETNOOT01219 231 0.2349 (385/1639) 0 * Os_TE_584926 Os_TE_584926 Chr12 3436926 3436925 + ORSgTETNOOT00908 242 0.1566 (440/2810) 0 * Os_TE_584927 Os_TE_584904 Chr12 3423769 3423770 + GYPSY-A_LTR 8951 0.0003 (1/2949) 0 * Os_TE_584903 Os_TE_584903 Chr12 3423765 3423764 - GYPSY-A_LTR 8951 0.0004 (1/2332) 0 * Os_TE_584904 Os_TE_584846 Chr12 3416279 3416278 - ORSgTEMT02400179 221 0.0017 (5/2974) 0 * * Os_TE_584817 Chr12 3409943 3409944 + ORSgTEMT02900076 336 0.0003 (1/2986) 0 * * Os_TE_584809 Chr12 3409076 3409075 - SC-3_LTR 5748 0.0007 (2/2990) 0 * * Os_TE_584792 Chr12 3401160 3401161 + TWIFBIG 3567 0.0017 (5/2973) 0 * * Os_TE_584779 Chr12 3397324 3397323 - INDITTO 263 0.2259 (674/2983) 0 * * Os_TE_584757 Chr12 3385891 3385892 + TWIFBIG 3567 0.0039 (11/2838) 0 * Os_TE_584756 Os_TE_584756 Chr12 3385884 3385883 - ORSiTETNOOT00216 3569 0.0259 (75/2891) 0 * Os_TE_584757 Os_TE_584750 Chr12 3383961 3383962 - SZ-40LTR 2465 0.0003 (1/2987) 0 * * Os_TE_584745 Chr12 3382641 3382640 - OSTE18 129 0.0017 (5/2979) 0 * * Os_TE_584728 Chr12 3378745 3378746 - ORSgTETNOOT01607 258 0.0003 (1/2954) 0 * Os_TE_584727 Os_TE_584727 Chr12 3378744 3378743 + STOWAWAY17_OS 259 0.0003 (1/2953) 0 * Os_TE_584728 Os_TE_584697 Chr12 3369878 3369877 + STOWAWAY51_OS 246 0.0141 (42/2986) 0 * Os_TE_584696 Os_TE_584696 Chr12 3369872 3369873 - STOWAWAY51_OS 246 0.0134 (40/2988) 0 * Os_TE_584697 Os_TE_584691 Chr12 3366703 3366704 - SC-8_LTR 4951 0.0027 (8/2991) 0 * Os_TE_584690 Os_TE_584690 Chr12 3366699 3366698 + SC-8_LTR 4951 0.0027 (8/2989) 0 * Os_TE_584691 Os_TE_584683 Chr12 3358898 3358899 - ORSgTEMT02400179 221 0.0007 (2/2991) 0 * Os_TE_584682 Os_TE_584682 Chr12 3358897 3358896 - TYPEM 227 0.0007 (2/2994) 0 * Os_TE_584683 Os_TE_584678 Chr12 3356904 3356905 + RIREX_LTR 8828 0.2167 (640/2953) 0 * Os_TE_584677 Os_TE_584677 Chr12 3356900 3356899 + RIREX_LTR 8828 0.2134 (638/2989) 0 * Os_TE_584678 Os_TE_584676 Chr12 3356667 3356668 - COPIA2-LTR_OS 6433 0.0003 (1/2980) 0 * * Os_TE_584674 Chr12 3354879 3354880 - MPING 430 0.0007 (2/2992) 0 * Os_TE_584673 Os_TE_584673 Chr12 3354877 3354876 + MPING 430 0.0007 (2/2994) 0 * Os_TE_584674 Os_TE_584670 Chr12 3349816 3349817 + ORSiTERTOOT00296 5553 0.0003 (1/2990) 0 * Os_TE_584669 Os_TE_584669 Chr12 3349812 3349811 - SC-3_LTR 5748 0.0003 (1/2989) 0 * Os_TE_584670 Os_TE_584650 Chr12 3344331 3344332 + ORSgTEMT01601591 242 0.0003 (1/2971) 0 * * Os_TE_584642 Chr12 3337055 3337056 - SZ-67LTR 1540 0.0021 (6/2880) 0 * Os_TE_584641 Os_TE_584641 Chr12 3337051 3337050 + SZ-67LTR 1540 0.0021 (6/2895) 0 * Os_TE_584642 Os_TE_584619 Chr12 3321377 3321378 + COPIA2-LTR_OS 6433 0.0054 (16/2989) 0 * Os_TE_584618 Os_TE_584618 Chr12 3321373 3321372 - COPIA2-LTR_OS 6433 0.0060 (18/2992) 0 * Os_TE_584619 Os_TE_584608 Chr12 3311191 3311192 - CLOUD 734 0.0023 (7/2985) 0 * Os_TE_584607 Os_TE_584607 Chr12 3311183 3311182 + CLOUD 734 0.0020 (6/2985) 0 * Os_TE_584608 Os_TE_584581 Chr12 3290730 3290731 + ORSgTETNOOT00908 242 0.6794 (2022/2976) 0 * * Os_TE_584577 Chr12 3286216 3285787 - MPING 430 0.0281 (84/2994) 1 Intact Os_TE_584576 Os_TE_584576 Chr12 3285787 3286216 + MPING 430 0.0271 (81/2993) 1 Intact Os_TE_584577 Os_TE_584567 Chr12 3283694 3283695 - RIREX_LTR 8828 0.0003 (1/2976) 0 * Os_TE_584566 Os_TE_584566 Chr12 3283690 3283689 + RIREX_LTR 8828 0.0003 (1/2975) 0 * Os_TE_584567 Os_TE_584565 Chr12 3283532 3283531 - TYPEM 227 0.0258 (77/2989) 0 * Os_TE_584564 Os_TE_584564 Chr12 3283531 3283532 - ORSgTEMT02400246 177 0.0251 (75/2985) 0 * Os_TE_584565 Os_TE_584562 Chr12 3282606 3282607 + TRUNCATOR 2918 0.0144 (43/2989) 0 * * Os_TE_584561 Chr12 3281346 3281347 + ORSiTERTOOT00296 5553 0.0060 (18/2996) 0 * Os_TE_584560 Os_TE_584560 Chr12 3281342 3281341 - SC-3_LTR 5748 0.0060 (18/2997) 0 * Os_TE_584561 Os_TE_584532 Chr12 3273573 3273572 - RIREX_LTR 8828 0.0010 (1/963) 0 * * Os_TE_584423 Chr12 3240582 3240583 + ORSiTERTOOT00296 5553 0.0037 (11/2999) 0 * Os_TE_584422 Os_TE_584422 Chr12 3240578 3240577 - SC-3_LTR 5748 0.0037 (11/2999) 0 * Os_TE_584423 Os_TE_584381 Chr12 3221605 3221604 - SC-3_LTR 5748 0.0003 (1/2994) 0 * * Os_TE_584368 Chr12 3211812 3211813 + BUHUI 375 0.0024 (7/2966) 0 * * Os_TE_584301 Chr12 3172520 3172519 - HARB-N1_OS 2589 0.0647 (193/2983) 0 * * Os_TE_584298 Chr12 3171584 3171585 - COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_584297 Os_TE_584297 Chr12 3171580 3171579 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_584298 Os_TE_584296 Chr12 3171141 3171142 - SC-4_LTR 5218 0.0003 (1/2991) 0 * Os_TE_584295 Os_TE_584295 Chr12 3171137 3171136 + SC-4_LTR 5218 0.0003 (1/2991) 0 * Os_TE_584296 Os_TE_584257 Chr12 3158119 3158120 - STOWAWAY51_OS 246 0.0004 (1/2722) 0 * * Os_TE_584250 Chr12 3152481 3152334 + ORSgTEMT00501027 149 0.8625 (2535/2939) 1 Intact * Os_TE_584238 Chr12 3151234 3151235 - COPIA2-LTR_OS 6433 0.0003 (1/2970) 0 * Os_TE_584237 Os_TE_584237 Chr12 3151230 3151229 + COPIA2-LTR_OS 6433 0.0003 (1/2974) 0 * Os_TE_584238 Os_TE_584225 Chr12 3143987 3143986 - CLOUD 734 0.0007 (2/2974) 0 * * Os_TE_584223 Chr12 3142973 3142972 - HARB-1_OS 5166 0.0023 (7/2991) 0 * * Os_TE_584215 Chr12 3141820 3141821 - COPI2_LTR 4733 0.0114 (21/1847) 0 * Os_TE_584214 Os_TE_584214 Chr12 3141816 3141815 + COPI2_LTR 4733 0.0070 (21/2993) 0 * Os_TE_584215 Os_TE_584202 Chr12 3140184 3140185 - TYPEM 227 0.0114 (34/2980) 0 * Os_TE_584201 Os_TE_584201 Chr12 3140183 3140182 - ORSgTEMT02400179 221 0.0114 (34/2980) 0 * Os_TE_584202 Os_TE_584171 Chr12 3133788 3133789 + INDITTO 263 0.0034 (10/2981) 0 * * Os_TE_584112 Chr12 3116837 3116836 - NDNA1TNA_OS 334 0.0030 (9/2997) 0 * * Os_TE_584098 Chr12 3113937 3113936 - STOWAWAY51_OS 246 0.0007 (2/2981) 0 * Os_TE_584097 Os_TE_584097 Chr12 3113934 3113935 - STOWAWAY51_OS 246 0.0007 (2/2973) 0 * Os_TE_584098 Os_TE_584096 Chr12 3113825 3113826 + ORSgTETNOOT00032 218 0.0590 (175/2968) 0 * * Os_TE_584073 Chr12 3111296 3111297 + MPING 430 0.0003 (1/2966) 0 * * Os_TE_584071 Chr12 3109448 3109449 + NDNA1TNA_OS 334 0.0007 (2/2988) 0 * * Os_TE_584028 Chr12 3087927 3087928 + EnSpm-13_OS 11171 0.0050 (15/2988) 0 * Os_TE_584027 Os_TE_584027 Chr12 3087925 3087924 - EnSpm-13_OS 11171 0.0053 (16/2993) 0 * Os_TE_584028 Os_TE_584004 Chr12 3077598 3077599 - MUDROS1 4932 0.0020 (6/2979) 0 * * Os_TE_583996 Chr12 3076190 3076191 + COPIA2-LTR_OS 6433 0.0011 (3/2852) 0 * Os_TE_583995 Os_TE_583995 Chr12 3076186 3076185 - COPIA2-LTR_OS 6433 0.0011 (3/2856) 0 * Os_TE_583996 Os_TE_583968 Chr12 3068680 3068681 + TWIF 586 0.0058 (17/2955) 0 * Os_TE_583967 Os_TE_583967 Chr12 3068673 3068672 - ORSiTETNOOT00134 607 0.0088 (26/2960) 0 * Os_TE_583968 Os_TE_583953 Chr12 3065613 3065614 - RIRE2_LTR 11306 0.0081 (24/2972) 0 * Os_TE_583952 Os_TE_583952 Chr12 3065609 3065608 - ORSgTERT00201216 11284 0.0081 (24/2966) 0 * Os_TE_583953 Os_TE_583936 Chr12 3058317 3058318 - COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * * Os_TE_583931 Chr12 3057757 3057756 - RIRE5-LTR_OS 6427 0.0003 (1/2991) 0 * * Os_TE_583901 Chr12 3043342 3043343 + CLOUD-7 495 0.0003 (1/2972) 0 * * Os_TE_583900 Chr12 3042663 3042664 + ORSgTETNOOT01834 251 0.0003 (1/2957) 0 * Os_TE_583899 Os_TE_583899 Chr12 3042661 3042660 + ORSgTETNOOT01998 254 0.0003 (1/2965) 0 * Os_TE_583900 Os_TE_583878 Chr12 3039131 3039132 + MPING 430 0.0003 (1/2982) 0 * Os_TE_583877 Os_TE_583877 Chr12 3039129 3039128 - MPING 430 0.0003 (1/2974) 0 * Os_TE_583878 Os_TE_583867 Chr12 3034631 3034632 - COPI2_LTR 4733 0.0090 (27/2995) 0 * Os_TE_583866 Os_TE_583866 Chr12 3034626 3034625 + COPI2_LTR 4733 0.0090 (27/2996) 0 * Os_TE_583867 Os_TE_583828 Chr12 3010188 3010189 + INDITTO 263 0.0017 (5/2975) 0 * Os_TE_583827 Os_TE_583827 Chr12 3010186 3010185 - INDITTO 263 0.0017 (5/2972) 0 * Os_TE_583828 Os_TE_583826 Chr12 3008961 3008962 + MPING 430 0.0003 (1/2964) 0 * Os_TE_583825 Os_TE_583825 Chr12 3008959 3008958 - MPING 430 0.0003 (1/2959) 0 * Os_TE_583826 Os_TE_583791 Chr12 3002273 2998389 + RETROSAT4_LTR 13504 0.6637 (1952/2941) 1 Solo_LTR Os_TE_583789 Os_TE_583789 Chr12 2998389 3002273 - RETROSAT4_LTR 13504 0.6718 (2002/2980) 1 Solo_LTR Os_TE_583791 Os_TE_583788 Chr12 2997809 2997810 + JOUZHENA 607 0.0007 (2/2979) 0 * Os_TE_583787 Os_TE_583787 Chr12 2997802 2997801 - JOUZHENA 607 0.0003 (1/2973) 0 * Os_TE_583788 Os_TE_583783 Chr12 2996902 2996903 - SZ-43LTR 4039 0.0259 (76/2929) 0 * Os_TE_583782 Os_TE_583782 Chr12 2996898 2996897 + SZ-43LTR 4039 0.0239 (70/2923) 0 * Os_TE_583783 Os_TE_583751 Chr12 2965072 2965073 - TOS17LTR 138 0.0003 (1/2989) 0 * Os_TE_583750 Os_TE_583750 Chr12 2965068 2965067 + TOS17LTR 138 0.0003 (1/2991) 0 * Os_TE_583751 Os_TE_583737 Chr12 2950658 2950659 + COPIA2-LTR_OS 6433 0.0027 (8/2978) 0 * Os_TE_583736 Os_TE_583736 Chr12 2950654 2950653 - COPIA2-LTR_OS 6433 0.0027 (8/2980) 0 * Os_TE_583737 Os_TE_583734 Chr12 2950125 2950124 + DS-RICE3N 525 0.0003 (1/2957) 0 * * Os_TE_583724 Chr12 2947629 2947628 - RETROSAT2LTR 12796 0.0077 (23/2986) 0 * * Os_TE_583723 Chr12 2947544 2947545 - ORSgTEMT01701624 178 0.0007 (2/2925) 0 * * Os_TE_583719 Chr12 2946631 2946632 + SEVERIN-2 1952 0.0003 (1/2951) 0 * * Os_TE_583705 Chr12 2938872 2938871 - ORSgTEMT00901557 189 0.2699 (802/2972) 0 * * Os_TE_583663 Chr12 2919495 2919496 - RETRO1_LTR 8314 0.0007 (2/2891) 0 * Os_TE_583662 Os_TE_583662 Chr12 2919491 2919490 + RETRO1_LTR 8314 0.0003 (1/2892) 0 * Os_TE_583663 Os_TE_583627 Chr12 2911579 2911578 - ORSgTEMT02400246 177 0.0010 (3/2971) 0 * Os_TE_583626 Os_TE_583626 Chr12 2911577 2911578 - TYPEM 227 0.0010 (3/2982) 0 * Os_TE_583627 Os_TE_583609 Chr12 2908796 2908797 + ORSgTEMT01601445 230 0.0003 (1/2988) 0 * * Os_TE_583586 Chr12 2900939 2900938 - CLOUD 734 0.0003 (1/2919) 0 * * Os_TE_583571 Chr12 2898359 2898358 - COPIA2-LTR_OS 6433 0.0003 (1/2866) 0 * * Os_TE_583540 Chr12 2892626 2892625 + STOWAWAY51_OS 246 0.0017 (5/2977) 0 * Os_TE_583539 Os_TE_583539 Chr12 2892620 2892621 + ORSgTEMT01601591 242 0.0017 (5/2970) 0 * Os_TE_583540 Os_TE_583538 Chr12 2892428 2892429 + RIREX_LTR 8828 0.0020 (6/2973) 0 * Os_TE_583537 Os_TE_583537 Chr12 2892424 2892423 - RIREX_LTR 8828 0.0020 (6/2966) 0 * Os_TE_583538 Os_TE_583529 Chr12 2889146 2889147 + MERMITEJ 1498 0.0003 (1/2949) 0 * * Os_TE_583523 Chr12 2887469 2885597 + MERMITEA 1710 0.7043 (2103/2986) 1 Intact Os_TE_583521 Os_TE_583521 Chr12 2885580 2887469 - MERMITED 1572 0.7022 (2099/2989) 1 Intact Os_TE_583523 Os_TE_583514 Chr12 2882963 2882964 - ORSgTETN00200001 10994 0.0070 (21/2990) 0 * Os_TE_583513 Os_TE_583513 Chr12 2882961 2882960 + SPMLIKE 10989 0.0087 (26/2989) 0 * Os_TE_583514 Os_TE_583471 Chr12 2865413 2865414 - TRUNCATOR2_LTR 2904 0.0090 (27/2993) 0 * * Os_TE_583430 Chr12 2850463 2850462 + ORSgTETN00200005 1121 0.0003 (1/2988) 0 * Os_TE_583429 Os_TE_583429 Chr12 2850462 2850463 + CACTA-I 1124 0.0003 (1/2989) 0 * Os_TE_583430 Os_TE_583417 Chr12 2848061 2848060 - COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * * Os_TE_583404 Chr12 2842049 2842050 + ORSiTERTOOT00296 5553 0.0003 (1/2974) 0 * Os_TE_583403 Os_TE_583403 Chr12 2842045 2842044 - SC-3_LTR 5748 0.0003 (1/2969) 0 * Os_TE_583404 Os_TE_583387 Chr12 2839279 2839278 - ORSgTEMT00100312 345 0.0031 (9/2948) 0 * * Os_TE_583379 Chr12 2833200 2833201 - SC-3_LTR 5748 0.0003 (1/2995) 0 * Os_TE_583378 Os_TE_583378 Chr12 2833196 2833195 + ORSiTERTOOT00296 5553 0.0003 (1/2995) 0 * Os_TE_583379 Os_TE_583372 Chr12 2826402 2826401 + RIREX_LTR 8828 0.0003 (1/2986) 0 * * Os_TE_583370 Chr12 2825375 2825376 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_583369 Os_TE_583369 Chr12 2825371 2825370 - COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_583370 Os_TE_583368 Chr12 2825114 2825115 + COPI2_LTR 4733 0.0003 (1/2992) 0 * * Os_TE_583354 Chr12 2821000 2820999 + COPI2_LTR 4733 0.0003 (1/2988) 0 * * Os_TE_583339 Chr12 2814642 2814404 - ORSgTEMT01601432 239 0.8882 (2591/2917) 1 Intact Os_TE_583338 Os_TE_583338 Chr12 2814404 2814642 + ORSgTEMT01602181 239 0.8884 (2586/2911) 1 Intact Os_TE_583339 Os_TE_583294 Chr12 2804739 2804740 - RETRO1_LTR 8314 0.0007 (2/2833) 0 * * Os_TE_583287 Chr12 2792067 2800655 - MuDR3_OS 8604 0.8889 (2520/2835) 1 Intact * Os_TE_583283 Chr12 2791913 2791914 + COPIA2-LTR_OS 6433 0.0003 (1/2924) 0 * * Os_TE_583279 Chr12 2791300 2791299 + ORSgTERT00201382 11280 0.0034 (10/2968) 0 * * Os_TE_583241 Chr12 2780352 2780353 + MERMITEA 1710 0.0020 (6/2993) 0 * Os_TE_583240 Os_TE_583240 Chr12 2780347 2780346 - MERMITED 1572 0.0020 (6/2995) 0 * Os_TE_583241 Os_TE_583236 Chr12 2778028 2778029 - COPI2_LTR 4733 0.0013 (4/2984) 0 * Os_TE_583235 Os_TE_583235 Chr12 2778024 2778023 + COPI2_LTR 4733 0.0014 (4/2915) 0 * Os_TE_583236 Os_TE_583232 Chr12 2775145 2768826 - OSLINE1_2 6317 0.8964 (2673/2982) 1 Intact Os_TE_583231 Os_TE_583231 Chr12 2768826 2775143 + OSLINE1_2 6317 0.8993 (2697/2999) 1 Intact Os_TE_583232 Os_TE_583213 Chr12 2764288 2764289 - INDITTO 263 0.0035 (10/2866) 0 * Os_TE_583212 Os_TE_583212 Chr12 2764286 2764285 + INDITTO 263 0.0038 (11/2869) 0 * Os_TE_583213 Os_TE_583211 Chr12 2764131 2764132 - SZ-5LTR 1223 0.0007 (2/2920) 0 * * Os_TE_583198 Chr12 2759331 2759330 + STOWAWAY44_OS 240 0.0003 (1/2869) 0 * * Os_TE_583185 Chr12 2755549 2755548 + ORSiTERTOOT00296 5553 0.0003 (1/2994) 0 * * Os_TE_583173 Chr12 2748277 2748278 + COPIA2-LTR_OS 6433 0.0017 (5/2996) 0 * Os_TE_583172 Os_TE_583172 Chr12 2748273 2748272 - COPIA2-LTR_OS 6433 0.0013 (4/2998) 0 * Os_TE_583173 Os_TE_583164 Chr12 2745569 2745568 + SPMLIKE 10989 0.0004 (1/2824) 0 * * Os_TE_583162 Chr12 2745122 2745123 + COPI2_LTR 4733 0.0003 (1/2998) 0 * * Os_TE_583147 Chr12 2740926 2740927 + CACTA-H 1152 0.0268 (80/2980) 0 * * Os_TE_583144 Chr12 2738595 2738596 - ORSiTERTOOT00321 5685 0.0284 (85/2989) 0 * Os_TE_583143 Os_TE_583143 Chr12 2738591 2738590 + ORSiTERTOOT00321 5685 0.0287 (86/2993) 0 * Os_TE_583144 Os_TE_583136 Chr12 2735703 2735704 + ORSgTEMT00900644 248 0.0010 (3/2972) 0 * * Os_TE_583131 Chr12 2734970 2734541 - MPING 430 0.0235 (70/2978) 1 Intact Os_TE_583130 Os_TE_583130 Chr12 2734541 2734970 + MPING 430 0.0252 (74/2942) 1 Intact Os_TE_583131 Os_TE_583113 Chr12 2717499 2717500 + SZ-62LTR 3649 0.0043 (12/2809) 0 * Os_TE_583112 Os_TE_583112 Chr12 2717495 2717494 - SZ-62LTR 3649 0.0042 (12/2843) 0 * Os_TE_583113 Os_TE_583096 Chr12 2707997 2707998 - TYPEU1 380 0.0007 (2/2997) 0 * Os_TE_583095 Os_TE_583095 Chr12 2707989 2707988 + TYPEU4 402 0.0007 (2/2997) 0 * Os_TE_583096 Os_TE_583085 Chr12 2702768 2702767 + ORSiTETNOOT00107 906 0.0020 (6/2968) 0 * * Os_TE_583084 Chr12 2701403 2701402 + EnSpm-10_OS 11265 0.0003 (1/2977) 0 * * Os_TE_583079 Chr12 2700306 2700307 + CACTA-H 1152 0.0017 (5/2937) 0 * * Os_TE_583042 Chr12 2673609 2673610 + COPIA2-LTR_OS 6433 0.0013 (4/2989) 0 * Os_TE_583041 Os_TE_583041 Chr12 2673605 2673604 - COPIA2-LTR_OS 6433 0.0010 (3/2992) 0 * Os_TE_583042 Os_TE_583028 Chr12 2668861 2668862 + COPIA2-LTR_OS 6433 0.0003 (1/2979) 0 * Os_TE_583027 Os_TE_583027 Chr12 2668857 2668856 - COPIA2-LTR_OS 6433 0.0003 (1/2980) 0 * Os_TE_583028 Os_TE_583025 Chr12 2668417 2668416 - SINE03_OS 360 0.0064 (19/2989) 0 * * Os_TE_583024 Chr12 2668411 2668410 + STOWAWAY51_OS 246 0.0050 (15/2985) 0 * Os_TE_583023 Os_TE_583023 Chr12 2668405 2668406 + ORSgTEMT01601591 242 0.0050 (15/2992) 0 * Os_TE_583024 Os_TE_583010 Chr12 2660647 2660648 - OSTONOR1_LTR 6440 0.0003 (1/2988) 0 * Os_TE_583009 Os_TE_583009 Chr12 2660643 2660642 + OSTONOR1_LTR 6440 0.0003 (1/2990) 0 * Os_TE_583010 Os_TE_583001 Chr12 2656910 2656911 - OSCOPIA1_LTR 4754 0.0060 (18/2986) 0 * Os_TE_583000 Os_TE_583000 Chr12 2656906 2656905 + OSCOPIA1_LTR 4754 0.0060 (18/2984) 0 * Os_TE_583001 Os_TE_582996 Chr12 2650532 2650533 + ORSiTERTOOT00296 5553 0.0003 (1/2998) 0 * Os_TE_582995 Os_TE_582995 Chr12 2650528 2650527 - SC-3_LTR 5748 0.0003 (1/2998) 0 * Os_TE_582996 Os_TE_582983 Chr12 2645205 2645206 + COPIA2-LTR_OS 6433 0.0003 (1/2981) 0 * Os_TE_582982 Os_TE_582982 Chr12 2645201 2645200 - COPIA2-LTR_OS 6433 0.0003 (1/2982) 0 * Os_TE_582983 Os_TE_582942 Chr12 2634842 2634843 + RIREX_LTR 8828 0.0003 (1/2916) 0 * * Os_TE_582908 Chr12 2620077 2620078 - MuDR3_OS 8604 0.0034 (10/2924) 0 * Os_TE_582907 Os_TE_582907 Chr12 2620069 2620068 + MuDR3_OS 8604 0.0031 (9/2928) 0 * Os_TE_582908 Os_TE_582903 Chr12 2618237 2618238 - SZ-62LTR 3649 0.0025 (6/2360) 0 * Os_TE_582902 Os_TE_582902 Chr12 2618233 2618232 + SZ-62LTR 3649 0.0017 (4/2369) 0 * Os_TE_582903 Os_TE_582897 Chr12 2616545 2616544 - STOWAWAY51_OS 246 0.0003 (1/2945) 0 * * Os_TE_582891 Chr12 2615520 2615519 - ORSgTEMT00900741 219 0.0020 (6/2981) 0 * Os_TE_582890 Os_TE_582890 Chr12 2615516 2615517 + ORSgTEMT00901798 232 0.0020 (6/2977) 0 * Os_TE_582891 Os_TE_582883 Chr12 2609769 2609770 - TYPEU1 380 0.0611 (183/2994) 0 * Os_TE_582882 Os_TE_582882 Chr12 2609760 2609759 + TYPEU4 402 0.0611 (183/2995) 0 * Os_TE_582883 Os_TE_582877 Chr12 2603121 2603122 + F569 228 0.0003 (1/2997) 0 * Os_TE_582876 Os_TE_582876 Chr12 2603119 2603118 - F569 228 0.0003 (1/2997) 0 * Os_TE_582877 Os_TE_582866 Chr12 2598926 2598927 - SC-8_LTR 4951 0.0080 (24/2990) 0 * Os_TE_582865 Os_TE_582865 Chr12 2598922 2598921 + SC-8_LTR 4951 0.0080 (24/2992) 0 * Os_TE_582866 Os_TE_582848 Chr12 2588647 2588648 + SC-8_LTR 4951 0.0070 (21/2980) 0 * Os_TE_582847 Os_TE_582847 Chr12 2588643 2588642 - SC-8_LTR 4951 0.0070 (21/2989) 0 * Os_TE_582848 Os_TE_582846 Chr12 2586039 2586040 - COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_582845 Os_TE_582845 Chr12 2586035 2586034 + COPI2_LTR 4733 0.0003 (1/2993) 0 * Os_TE_582846 Os_TE_582844 Chr12 2584618 2584617 + SPMLIKE 10989 0.0003 (1/2991) 0 * * Os_TE_582742 Chr12 2548022 2548023 - NDNA1TNA_OS 334 0.0030 (9/2989) 0 * Os_TE_582741 Os_TE_582741 Chr12 2548020 2548019 + NDNA1TNA_OS 334 0.0030 (9/2992) 0 * Os_TE_582742 Os_TE_582729 Chr12 2538750 2538751 + COPI2_LTR 4733 0.0024 (7/2972) 0 * Os_TE_582728 Os_TE_582728 Chr12 2538746 2538745 - COPI2_LTR 4733 0.0017 (5/2974) 0 * Os_TE_582729 Os_TE_582721 Chr12 2532295 2527372 - SC-10_LTR 4920 0.3586 (1075/2998) 1 Intact Os_TE_582719 Os_TE_582719 Chr12 2527372 2532295 + SC-10_LTR 4920 0.3599 (1079/2998) 1 Intact Os_TE_582721 Os_TE_582712 Chr12 2524599 2524840 - ORSgTEMT01601366 243 0.4249 (1264/2975) 1 Intact * Os_TE_582711 Chr12 2524415 2524414 + ORSgTETNOOT00908 242 0.0637 (189/2968) 0 * * Os_TE_582710 Chr12 2524312 2524311 + ORSgTEMT00700017 386 0.0041 (12/2953) 0 * * Os_TE_582670 Chr12 2508279 2508280 + COPIA2-LTR_OS 6433 0.0003 (1/2973) 0 * * Os_TE_582668 Chr12 2507176 2507177 + RIREX_LTR 8828 0.5668 (1654/2918) 0 * Os_TE_582667 Os_TE_582667 Chr12 2507172 2507171 - RIREX_LTR 8828 0.5704 (1674/2935) 0 * Os_TE_582668 Os_TE_582666 Chr12 2506824 2506825 - RIREX_LTR 8828 0.0004 (1/2849) 0 * * Os_TE_582640 Chr12 2491374 2491375 + RIREX_LTR 8828 0.0008 (1/1318) 0 * Os_TE_582639 Os_TE_582639 Chr12 2491370 2491369 - RIREX_LTR 8828 0.0008 (1/1318) 0 * Os_TE_582640 Os_TE_582612 Chr12 2485975 2485976 - SZ-22_LTR 4403 0.0007 (2/2862) 0 * Os_TE_582611 Os_TE_582611 Chr12 2485971 2485970 + ORSiTERTOOT00226 792 0.0007 (2/2799) 0 * Os_TE_582612 Os_TE_582602 Chr12 2483376 2483377 + RIREX_LTR 8828 0.0011 (3/2665) 0 * Os_TE_582601 Os_TE_582601 Chr12 2483372 2483371 - RIREX_LTR 8828 0.0007 (2/2668) 0 * Os_TE_582602 Os_TE_582581 Chr12 2477180 2477181 + MERMITE18D 1491 0.6509 (1941/2982) 0 * * Os_TE_582568 Chr12 2472806 2472807 + ORSiTERTOOT00226 792 0.0003 (1/2986) 0 * Os_TE_582567 Os_TE_582567 Chr12 2472802 2472801 - SZ-22_LTR 4403 0.0003 (1/2986) 0 * Os_TE_582568 Os_TE_582562 Chr12 2471345 2471344 - STOWAWAY51_OS 246 0.0007 (2/2991) 0 * Os_TE_582561 Os_TE_582561 Chr12 2471339 2471340 + STOWAWAY51_OS 246 0.0003 (1/2986) 0 * Os_TE_582562 Os_TE_582552 Chr12 2468001 2468000 + SEVERIN-2 1952 0.0003 (1/2974) 0 * * Os_TE_582526 Chr12 2459434 2459435 + ORSgTETNOOT01275 140 0.0003 (1/2926) 0 * * Os_TE_582493 Chr12 2449146 2449147 - ORSiTETNOOT00156 3648 0.0071 (21/2963) 0 * Os_TE_582492 Os_TE_582492 Chr12 2449139 2449138 + TWIF 586 0.0064 (19/2966) 0 * Os_TE_582493 Os_TE_582491 Chr12 2448986 2448985 - OSTE21 1271 0.0037 (11/2976) 0 * * Os_TE_582484 Chr12 2446737 2446736 - ORSgTEMT00901345 248 0.0040 (12/2984) 0 * Os_TE_582483 Os_TE_582483 Chr12 2446735 2446736 - ORSgTEMT00900099 250 0.0034 (10/2984) 0 * Os_TE_582484 Os_TE_582473 Chr12 2440353 2440354 + AMYLTP 383 0.0010 (3/2938) 0 * Os_TE_582472 Os_TE_582472 Chr12 2440345 2440344 - AMYLTP 383 0.0021 (6/2923) 0 * Os_TE_582473 Os_TE_582468 Chr12 2439871 2439872 + COPIA2-LTR_OS 6433 0.0007 (2/2977) 0 * Os_TE_582467 Os_TE_582467 Chr12 2439867 2439866 - COPIA2-LTR_OS 6433 0.0007 (2/2975) 0 * Os_TE_582468 Os_TE_582461 Chr12 2439210 2439209 - TRUNCATOR2_LTR 2904 0.0003 (1/2997) 0 * * Os_TE_582455 Chr12 2437492 2437493 - ORSgTERT00201216 11284 0.0003 (1/2998) 0 * Os_TE_582454 Os_TE_582454 Chr12 2437488 2437487 - RIRE2_LTR 11306 0.0003 (1/2997) 0 * Os_TE_582455 Os_TE_582439 Chr12 2430028 2430029 + RETROSAT2LTR 12796 0.5176 (1514/2925) 0 * Os_TE_582438 Os_TE_582438 Chr12 2430026 2430025 - RETROSAT2LTR 12796 0.5300 (1583/2987) 0 * Os_TE_582439 Os_TE_582428 Chr12 2421412 2421413 + COPI2_LTR 4733 0.0003 (1/2950) 0 * Os_TE_582427 Os_TE_582427 Chr12 2421408 2421407 - COPI2_LTR 4733 0.0003 (1/2950) 0 * Os_TE_582428 Os_TE_582415 Chr12 2415707 2415708 + ORSgTETNOOT00908 242 0.0014 (4/2952) 0 * * Os_TE_582399 Chr12 2409688 2409689 + RETRO2_LTR 12874 0.6344 (1888/2976) 0 * Os_TE_582398 Os_TE_582398 Chr12 2409684 2409683 - RETRO2_LTR 12874 0.6290 (1848/2938) 0 * Os_TE_582399 Os_TE_582386 Chr12 2401683 2401682 + ORSgTEMT01601591 242 0.0003 (1/2986) 0 * Os_TE_582385 Os_TE_582385 Chr12 2401677 2401678 + STOWAWAY51_OS 246 0.0003 (1/2991) 0 * Os_TE_582386 Os_TE_582374 Chr12 2399385 2399386 - RIRE5-LTR_OS 6427 0.0161 (48/2987) 0 * Os_TE_582373 Os_TE_582373 Chr12 2399378 2399377 + RIRE5-LTR_OS 6427 0.0141 (42/2986) 0 * Os_TE_582374 Os_TE_582363 Chr12 2398207 2398208 - ORSgTEMT00600524 364 0.1198 (356/2971) 0 * * Os_TE_582348 Chr12 2389993 2389994 - SC-4_LTR 5218 0.0003 (1/2978) 0 * Os_TE_582347 Os_TE_582347 Chr12 2389989 2389988 + SC-4_LTR 5218 0.0003 (1/2995) 0 * Os_TE_582348 Os_TE_582333 Chr12 2388056 2387813 - TESS 244 0.3391 (1005/2964) 1 Intact Os_TE_582331 Os_TE_582331 Chr12 2387813 2388056 + TESS 244 0.3407 (1012/2970) 1 Intact Os_TE_582333 Os_TE_582326 Chr12 2386928 2386927 - COPIA2-LTR_OS 6433 0.0010 (3/2992) 0 * * Os_TE_582310 Chr12 2377846 2377847 + SC-8_LTR 4951 0.0007 (2/2992) 0 * * Os_TE_582306 Chr12 2375395 2370163 + OSR3_LTR 5201 0.3416 (1024/2998) 1 Intact Os_TE_582305 Os_TE_582305 Chr12 2370149 2375336 - SC-7_LTR 4431 0.3403 (1019/2994) 1 Intact Os_TE_582306 Os_TE_582303 Chr12 2366563 2366564 + COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_582302 Os_TE_582302 Chr12 2366559 2366558 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_582303 Os_TE_582288 Chr12 2359854 2359855 + MDR2 6967 0.0050 (15/2982) 0 * Os_TE_582287 Os_TE_582287 Chr12 2359846 2359845 - MDR2 6967 0.0047 (14/2982) 0 * Os_TE_582288 Os_TE_582286 Chr12 2359620 2354108 + SC-5 3770 0.3373 (1000/2965) 1 Intact Os_TE_582285 Os_TE_582285 Chr12 2354108 2359620 - SC-5 3770 0.3414 (1017/2979) 1 Intact Os_TE_582286 Os_TE_582277 Chr12 2352659 2352658 - SZ-22_LTR 4403 0.0003 (1/2970) 0 * * Os_TE_582253 Chr12 2340105 2340106 - NDNA1TNA_OS 334 0.0050 (15/2985) 0 * Os_TE_582252 Os_TE_582252 Chr12 2340103 2340102 + NDNA1TNA_OS 334 0.0050 (15/2987) 0 * Os_TE_582253 Os_TE_582246 Chr12 2337614 2337615 + SZ-55_LTR 10318 0.0003 (1/2955) 0 * Os_TE_582245 Os_TE_582245 Chr12 2337610 2337609 - SZ-55_LTR 10318 0.0003 (1/2943) 0 * Os_TE_582246 Os_TE_582242 Chr12 2335082 2335083 - ORSiTEMT01000008 242 0.0050 (15/2996) 0 * * Os_TE_582200 Chr12 2306823 2306824 - ORSgTETNOOT00053 263 0.6491 (1942/2992) 0 * * Os_TE_582186 Chr12 2303577 2303254 - NDNA2TNA_OS 346 0.3350 (993/2964) 1 Intact * Os_TE_582182 Chr12 2302814 2302813 - INDITTO 263 0.1135 (338/2979) 0 * * Os_TE_582142 Chr12 2295912 2295911 + MPING 430 0.0003 (1/2871) 0 * * Os_TE_582140 Chr12 2295002 2295003 + ORSiTERTOOT00226 792 0.1154 (340/2946) 0 * Os_TE_582139 Os_TE_582139 Chr12 2294998 2294997 - SZ-22_LTR 4403 0.1148 (339/2954) 0 * Os_TE_582140 Os_TE_582131 Chr12 2293867 2293866 - AMYLTP 383 0.0020 (6/2990) 0 * * Os_TE_582125 Chr12 2290847 2290846 - RPO_OS 1983 0.0045 (13/2906) 0 * * Os_TE_582106 Chr12 2283345 2282838 - OSTE30 529 0.3387 (1006/2970) 1 Intact * Os_TE_582091 Chr12 2277655 2277656 + ORSiTERTOOT00226 792 0.0003 (1/2972) 0 * * Os_TE_582087 Chr12 2275532 2275533 + COPIA2-LTR_OS 6433 0.0003 (1/2984) 0 * Os_TE_582086 Os_TE_582086 Chr12 2275528 2275527 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_582087 Os_TE_582049 Chr12 2262279 2262280 - SZ-22_LTR 4403 0.6738 (2010/2983) 0 * Os_TE_582048 Os_TE_582048 Chr12 2262273 2262272 - AMYLTP 383 0.6660 (1960/2943) 0 * Os_TE_582049 Os_TE_582042 Chr12 2257519 2257518 + AMYLTP 383 0.0058 (6/1028) 0 * * Os_TE_582023 Chr12 2250368 2250369 - MPING 430 0.0003 (1/2988) 0 * Os_TE_582022 Os_TE_582022 Chr12 2250366 2250365 + MPING 430 0.0003 (1/2989) 0 * Os_TE_582023 Os_TE_582017 Chr12 2247900 2247901 - SC-3_LTR 5748 0.0013 (4/2995) 0 * Os_TE_582016 Os_TE_582016 Chr12 2247896 2247895 + ORSiTERTOOT00296 5553 0.0013 (4/2995) 0 * Os_TE_582017 Os_TE_582012 Chr12 2242281 2242280 + TREP220 109 0.0017 (5/2989) 0 * Os_TE_582011 Os_TE_582011 Chr12 2242278 2242279 + TREP220 109 0.0020 (6/2992) 0 * Os_TE_582012 Os_TE_581999 Chr12 2236096 2236097 + TNR2A 152 0.6712 (1986/2959) 0 * Os_TE_581998 Os_TE_581998 Chr12 2236083 2236082 - TNR2A 152 0.6755 (2005/2968) 0 * Os_TE_581999 Os_TE_581991 Chr12 2232165 2232166 - MPING 430 0.0023 (7/2981) 0 * Os_TE_581990 Os_TE_581990 Chr12 2232163 2232162 + MPING 430 0.0023 (7/2981) 0 * Os_TE_581991 Os_TE_581933 Chr12 2212810 2212811 + SZ-40LTR 2465 0.0007 (2/2975) 0 * Os_TE_581932 Os_TE_581932 Chr12 2212806 2212805 - GYPSY-A_LTR 8951 0.0007 (2/2971) 0 * Os_TE_581933 Os_TE_581921 Chr12 2208171 2208170 + ORSgTEMT00100272 356 0.0010 (3/2950) 0 * Os_TE_581920 Os_TE_581920 Chr12 2208170 2208171 - UNIQUE 158 0.0003 (1/2944) 0 * Os_TE_581921 Os_TE_581909 Chr12 2206586 2206585 + STOWAWAY51_OS 246 0.0064 (19/2973) 0 * * Os_TE_581896 Chr12 2203970 2203971 + NDNA1TNA_OS 334 0.0044 (13/2984) 0 * Os_TE_581895 Os_TE_581895 Chr12 2203968 2203967 - NDNA1TNA_OS 334 0.0040 (12/2987) 0 * Os_TE_581896 Os_TE_581880 Chr12 2200774 2200773 + ORSgTEMT01601591 242 0.0050 (15/2991) 0 * * Os_TE_581877 Chr12 2200562 2200561 - RETROFIT_LTR 4866 0.0004 (1/2777) 0 * * Os_TE_581871 Chr12 2198253 2198254 - SZ-22_LTR 4403 0.0003 (1/2996) 0 * Os_TE_581870 Os_TE_581870 Chr12 2198249 2198248 + ORSiTERTOOT00226 792 0.0003 (1/2998) 0 * Os_TE_581871 Os_TE_581818 Chr12 2180089 2180090 - ORSgTETNOOT02417 265 0.0020 (6/2978) 0 * * Os_TE_581817 Chr12 2179812 2179813 - ENSPM6_OS 9815 0.5045 (1336/2648) 0 * Os_TE_581816 Os_TE_581816 Chr12 2179810 2179809 + ENSPM5_OS 9581 0.5551 (1611/2902) 0 * Os_TE_581817 Os_TE_581810 Chr12 2179163 2179164 - SZ-40LTR 2465 0.0067 (20/2979) 0 * Os_TE_581809 Os_TE_581809 Chr12 2179159 2179158 + GYPSY-A_LTR 8951 0.0060 (18/2983) 0 * Os_TE_581810 Os_TE_581784 Chr12 2164385 2164384 - SC-3_LTR 5748 0.0003 (1/2970) 0 * * Os_TE_581774 Chr12 2159540 2159541 - INDITTO 263 0.0003 (1/2998) 0 * Os_TE_581773 Os_TE_581773 Chr12 2159538 2159537 + INDITTO 263 0.0003 (1/2988) 0 * Os_TE_581774 Os_TE_581764 Chr12 2157165 2157166 + TYPEU4 402 0.0003 (1/2998) 0 * Os_TE_581763 Os_TE_581763 Chr12 2157157 2157156 - TYPEU1 380 0.0003 (1/2991) 0 * Os_TE_581764 Os_TE_581757 Chr12 2151474 2151475 - SZ-35LTR 3853 0.1103 (329/2983) 0 * * Os_TE_581755 Chr12 2149155 2149156 - RETROSAT3_LTR 11537 0.0047 (14/2995) 0 * Os_TE_581754 Os_TE_581754 Chr12 2149151 2149150 + RETROSAT2LTRA 3112 0.0043 (13/2996) 0 * Os_TE_581755 Os_TE_581730 Chr12 2141873 2141874 - TRUNCATOR 2918 0.5298 (1501/2833) 0 * * Os_TE_581690 Chr12 2137082 2137081 - ORSgTERT00201441 428 0.5601 (1674/2989) 0 * * Os_TE_581649 Chr12 2099615 2099616 - RIRE3A_LTR 10580 0.0040 (12/2981) 0 * Os_TE_581648 Os_TE_581648 Chr12 2099611 2099610 + RIRE3A_LTR 10580 0.0040 (12/2980) 0 * Os_TE_581649 Os_TE_581647 Chr12 2099349 2099081 - ORSgTEMT06100010 269 0.3325 (966/2905) 1 Intact * Os_TE_581633 Chr12 2095704 2095703 - SC-3_LTR 5748 0.0003 (1/2992) 0 * * Os_TE_581609 Chr12 2086432 2086433 - ORSgTERT00201216 11284 0.0037 (11/2989) 0 * Os_TE_581608 Os_TE_581608 Chr12 2086428 2086427 - RIRE2_LTR 11306 0.0040 (12/2986) 0 * Os_TE_581609 Os_TE_581515 Chr12 2044577 2044578 - RETROSAT2LTR 12796 0.0007 (1/1344) 0 * Os_TE_581514 Os_TE_581514 Chr12 2044575 2044574 + RETROSAT2LTR 12796 0.0007 (1/1341) 0 * Os_TE_581515 Os_TE_581511 Chr12 2042236 2042235 + STOWAWAY51_OS 246 0.0014 (2/1381) 0 * Os_TE_581510 Os_TE_581510 Chr12 2042230 2042231 + ORSgTEMT01601591 242 0.0015 (2/1376) 0 * Os_TE_581511 Os_TE_581505 Chr12 2040384 2040385 - RIREX_LTR 8828 0.0087 (12/1373) 0 * Os_TE_581504 Os_TE_581504 Chr12 2040380 2040379 + RIREX_LTR 8828 0.0087 (12/1374) 0 * Os_TE_581505 Os_TE_581502 Chr12 2039536 2039535 - SZ-48LTR 3632 0.0011 (2/1837) 0 * * Os_TE_581483 Chr12 2027917 2027916 + STOWAWAY51_OS 246 0.0037 (11/2990) 0 * Os_TE_581482 Os_TE_581482 Chr12 2027911 2027912 - STOWAWAY51_OS 246 0.0037 (11/2997) 0 * Os_TE_581483 Os_TE_581377 Chr12 1999236 1999237 + CASLET 354 0.5595 (1670/2985) 0 * * Os_TE_581331 Chr12 1973720 1973719 - STOWAWAY51_OS 246 0.0011 (3/2661) 0 * Os_TE_581330 Os_TE_581330 Chr12 1973714 1973715 + STOWAWAY51_OS 246 0.0011 (3/2675) 0 * Os_TE_581331 Os_TE_581276 Chr12 1946392 1946391 + ORSiTERTOOT00333 4719 0.0049 (13/2645) 0 * Os_TE_581275 Os_TE_581275 Chr12 1946391 1946392 - ORSiTERTOOT00333 4719 0.0049 (13/2656) 0 * Os_TE_581276 Os_TE_581274 Chr12 1945025 1945026 - SC-3_LTR 5748 0.0004 (1/2674) 0 * Os_TE_581273 Os_TE_581273 Chr12 1945021 1945020 + ORSiTERTOOT00296 5553 0.0004 (1/2677) 0 * Os_TE_581274 Os_TE_581240 Chr12 1914169 1914170 + COPIA2-LTR_OS 6433 0.0037 (11/2997) 0 * * Os_TE_581168 Chr12 1879411 1879412 - STOWAWAY51_OS 246 0.0003 (1/2995) 0 * * Os_TE_581149 Chr12 1866158 1866159 - RETROSAT3_LTR 11537 0.0014 (4/2903) 0 * * Os_TE_581026 Chr12 1773984 1773983 - LINE-7_OS 7090 0.0003 (1/2992) 0 * * Os_TE_581024 Chr12 1772720 1772719 - ORSgTEMT06100010 269 0.0010 (3/2998) 0 * * Os_TE_580994 Chr12 1753095 1753094 + COPIA2-LTR_OS 6433 0.0328 (98/2988) 0 * * Os_TE_580987 Chr12 1750173 1750174 + ORSgTEMT01601591 242 0.0057 (17/2973) 0 * * Os_TE_580949 Chr12 1735120 1735121 + ORSgTEMT01601591 242 0.0007 (1/1351) 0 * * Os_TE_580928 Chr12 1711305 1711304 - ORSgTEMT01702045 137 0.0017 (5/2994) 0 * Os_TE_580927 Os_TE_580927 Chr12 1711302 1711303 + ORSgTEMT01701224 156 0.0017 (5/2993) 0 * Os_TE_580928 Os_TE_580897 Chr12 1670703 1670704 + AMYLTP 383 0.0017 (5/2978) 0 * * Os_TE_580794 Chr12 1603806 1603805 + ORSiTERTOOT00054 1772 0.0898 (269/2996) 0 * * Os_TE_580793 Chr12 1603503 1603504 + ORSiTERTOOT00296 5553 0.0003 (1/2986) 0 * * Os_TE_580777 Chr12 1594491 1594490 - ORSiTETNOOT00156 3648 0.0017 (5/2870) 0 * * Os_TE_580775 Chr12 1593608 1593609 - ORSgTEMT01400033 210 0.0020 (6/2987) 0 * * Os_TE_580757 Chr12 1592349 1592350 - ORSgTEMT00900099 250 0.0017 (5/2989) 0 * * Os_TE_580747 Chr12 1589069 1589070 + MPING 430 0.0027 (8/2996) 0 * * Os_TE_580744 Chr12 1586969 1586970 + STOWAWAY11_OS 292 0.0007 (2/2783) 0 * * Os_TE_580734 Chr12 1584535 1584534 - ORSgTEMT00900467 235 0.0003 (1/2986) 0 * * Os_TE_580731 Chr12 1583977 1583978 - STOWAWAY9_OS 235 0.0020 (6/2991) 0 * Os_TE_580730 Os_TE_580730 Chr12 1583976 1583975 + STOWAWAY9_OS 235 0.0020 (6/2998) 0 * Os_TE_580731 Os_TE_580699 Chr12 1574643 1574642 - SZ-40LTR 2465 0.0004 (1/2653) 0 * * Os_TE_580656 Chr12 1544984 1544985 - LINE-7_OS 7090 0.0020 (6/2994) 0 * * Os_TE_580590 Chr12 1517575 1517574 - EnSpm-16_OS 13336 0.0004 (1/2804) 0 * * Os_TE_580543 Chr12 1496834 1496833 - TRUNCATOR 2918 0.1228 (323/2631) 0 * * Os_TE_580524 Chr12 1486899 1486900 + CLOUD-4 520 0.0020 (6/2974) 0 * * Os_TE_580522 Chr12 1485941 1485942 - OSR42_LTR 5605 0.1150 (344/2991) 0 * Os_TE_580521 Os_TE_580521 Chr12 1485937 1485936 + OSR42_LTR 5605 0.1166 (349/2994) 0 * Os_TE_580522 Os_TE_580412 Chr12 1425772 1425771 + ORSgTEMT00501027 149 0.0004 (1/2281) 0 * * Os_TE_580409 Chr12 1425450 1425451 - COPIA2-LTR_OS 6433 0.0004 (1/2264) 0 * Os_TE_580408 Os_TE_580408 Chr12 1425446 1425445 + COPIA2-LTR_OS 6433 0.0004 (1/2265) 0 * Os_TE_580409 Os_TE_580392 Chr12 1419901 1419900 - HELITRON2_OS 15167 0.1011 (300/2968) 0 * Os_TE_580391 Os_TE_580391 Chr12 1419900 1419901 + HELITRON2_OS 15167 0.0988 (294/2976) 0 * Os_TE_580392 Os_TE_580381 Chr12 1411527 1411528 + COPIA2-LTR_OS 6433 0.0003 (1/2983) 0 * Os_TE_580380 Os_TE_580380 Chr12 1411523 1411522 - COPIA2-LTR_OS 6433 0.0003 (1/2981) 0 * Os_TE_580381 Os_TE_580378 Chr12 1410125 1410126 - ORSiTERTOOT00392 5205 0.0034 (10/2971) 0 * Os_TE_580377 Os_TE_580377 Chr12 1410121 1410120 + ORSiTERTOOT00392 5205 0.0034 (10/2968) 0 * Os_TE_580378 Os_TE_580311 Chr12 1374841 1374842 - ORSgTEMT01600079 232 0.0013 (4/2995) 0 * * Os_TE_580306 Chr12 1372182 1372183 - ORSiTERTOOT00333 4719 0.0010 (3/2960) 0 * * Os_TE_580274 Chr12 1343555 1343556 - ORSiTERTOOT00402 2660 0.0010 (3/2985) 0 * * Os_TE_580265 Chr12 1339641 1341611 + RPO_OS 1983 0.7961 (937/1177) 1 Intact * Os_TE_580250 Chr12 1332003 1332004 + TRUNCATOR2_LTR 2904 0.2272 (669/2945) 0 * Os_TE_580249 Os_TE_580249 Chr12 1331998 1331997 - TRUNCATOR2_LTR 2904 0.2413 (718/2976) 0 * Os_TE_580250 Os_TE_580248 Chr12 1330826 1330825 + OSTONOR1_LTR 6440 0.0010 (3/2994) 0 * * Os_TE_580241 Chr12 1328809 1328810 + ORSgTETNOOT00908 242 0.0043 (13/2997) 0 * * Os_TE_580239 Chr12 1321193 1321194 + ORSiTERT00100071 4657 0.0691 (207/2995) 0 * Os_TE_580238 Os_TE_580238 Chr12 1321189 1321188 - SZ-25LTR 330 0.0040 (10/2515) 0 * Os_TE_580239 Os_TE_580237 Chr12 1321184 1321185 + COPI1_LTR 4721 0.1838 (551/2998) 0 * * Os_TE_580236 Chr12 1320656 1320657 + ORSgTETNOOT01930 140 0.0020 (6/2998) 0 * * Os_TE_580185 Chr12 1290898 1290897 + COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * * Os_TE_580079 Chr12 1249481 1249482 - ORSiTERTOOT00291 11421 0.0017 (5/2980) 0 * Os_TE_580078 Os_TE_580078 Chr12 1249477 1249476 + ORSiTERTOOT00291 11421 0.0017 (5/2978) 0 * Os_TE_580079 Os_TE_580076 Chr12 1249285 1249284 + COPIA2-LTR_OS 6433 0.0013 (4/2992) 0 * * Os_TE_580061 Chr12 1246582 1246583 - TRUNCATOR2_LTR 2904 0.0510 (153/2998) 0 * Os_TE_580060 Os_TE_580060 Chr12 1246578 1246577 + ORSiCMCM00100019 2717 0.0510 (153/2999) 0 * Os_TE_580061 Os_TE_580058 Chr12 1246085 1246084 + COPIA2-LTR_OS 6433 0.0003 (1/2959) 0 * * Os_TE_580053 Chr12 1241400 1241401 - ORSgTETNOOT02565 240 0.1845 (531/2878) 0 * * Os_TE_580021 Chr12 1223774 1223773 - ORSgTEMT00700002 381 0.0007 (2/2967) 0 * * Os_TE_580000 Chr12 1207003 1207002 + ORSgTETN00200005 1121 0.0010 (3/2917) 0 * * Os_TE_579943 Chr12 1176597 1176596 - COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * * Os_TE_579927 Chr12 1166159 1166160 - ORSgTEMT01601432 239 0.0017 (5/2992) 0 * * Os_TE_579926 Chr12 1165854 1165853 + SZ-19LTR 1513 0.0010 (3/2990) 0 * * Os_TE_579921 Chr12 1159916 1159917 + RETROSAT4_LTR 13504 0.0157 (47/2992) 0 * Os_TE_579920 Os_TE_579920 Chr12 1159912 1159911 - SZ-35LTR 3853 0.0174 (52/2997) 0 * Os_TE_579921 Os_TE_579918 Chr12 1159287 1159288 - TOS17LTR 138 0.0252 (75/2979) 0 * Os_TE_579917 Os_TE_579917 Chr12 1159283 1159282 + TOS17LTR 138 0.0239 (71/2976) 0 * Os_TE_579918 Os_TE_579916 Chr12 1158345 1158344 + SC-7_LTR 4431 0.0017 (5/2996) 0 * * Os_TE_579902 Chr12 1153897 1153898 - SC-3_LTR 5748 0.0007 (2/2990) 0 * * Os_TE_579848 Chr12 1133955 1133954 + ORSgTETNOOT00908 242 0.0003 (1/2986) 0 * * Os_TE_579802 Chr12 1091311 1091310 - TYPEM 227 0.0020 (6/2993) 0 * Os_TE_579801 Os_TE_579801 Chr12 1091310 1091311 - ORSgTEMT02400246 177 0.0023 (7/2993) 0 * Os_TE_579802 Os_TE_579793 Chr12 1088891 1088892 + RETROSAT2LTRA 3112 0.0080 (24/2985) 0 * * Os_TE_579734 Chr12 1062328 1062329 - OSTONOR1_LTR 6440 0.5072 (1510/2977) 0 * Os_TE_579733 Os_TE_579733 Chr12 1062324 1062323 + OSTONOR1_LTR 6440 0.5123 (1526/2979) 0 * Os_TE_579734 Os_TE_579732 Chr12 1061839 1061840 - TNR3 1536 0.0017 (5/2988) 0 * Os_TE_579731 Os_TE_579731 Chr12 1061837 1061836 - ENSPM3_OS 10837 0.0017 (5/2988) 0 * Os_TE_579732 Os_TE_579715 Chr12 1055916 1056178 - INDITTO 263 0.5064 (1501/2964) 1 Intact * Os_TE_579712 Chr12 1052803 1052804 + ORSgTETNOOT01531 255 0.0027 (8/2931) 0 * * Os_TE_579656 Chr12 1033380 1033381 - COPI2_LTR 4733 0.0007 (2/2994) 0 * * Os_TE_579652 Chr12 1032426 1032427 - INDITTO 263 0.0011 (3/2772) 0 * Os_TE_579651 Os_TE_579651 Chr12 1032424 1032423 + INDITTO 263 0.0011 (3/2755) 0 * Os_TE_579652 Os_TE_579635 Chr12 1028187 1028188 - RIRE3_LTR 12054 0.0003 (1/2966) 0 * * Os_TE_579628 Chr12 1026219 1026220 - RETRO2A_LTR 12895 0.0007 (2/2903) 0 * Os_TE_579627 Os_TE_579627 Chr12 1026215 1026214 + RETRO2A_LTR 12895 0.0007 (2/2910) 0 * Os_TE_579628 Os_TE_579598 Chr12 1012360 1012361 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * * Os_TE_579580 Chr12 995332 995331 + RIREX_LTR 8828 0.0003 (1/2983) 0 * * Os_TE_579544 Chr12 967523 967522 + ORSiTERTOOT00296 5553 0.5568 (1666/2992) 0 * * Os_TE_579490 Chr12 950846 950847 + COPIA2-LTR_OS 6433 0.0114 (34/2984) 0 * * Os_TE_579471 Chr12 933680 933679 - ORSiTETNOOT00200 3563 0.3014 (837/2777) 0 * * Os_TE_579455 Chr12 927894 927895 - ORSgTEMT02400179 221 0.0019 (5/2660) 0 * Os_TE_579454 Os_TE_579454 Chr12 927893 927892 - TYPEM 227 0.0019 (5/2660) 0 * Os_TE_579455 Os_TE_579429 Chr12 900171 900170 - RIRE2_LTR 11306 0.0048 (5/1040) 0 * * Os_TE_579403 Chr12 884838 884837 + MERMITEA 1710 0.0020 (6/2991) 0 * * Os_TE_579389 Chr12 879043 879044 - RETRO2_LTR 12874 0.0010 (3/2968) 0 * * Os_TE_579382 Chr12 873450 873449 + SZ-55_LTR 10318 0.0010 (1/1047) 0 * * Os_TE_579369 Chr12 865074 865075 - SZ-COM 1308 0.0008 (2/2545) 0 * * Os_TE_579366 Chr12 859962 859963 - SC-3_LTR 5748 0.0003 (1/2986) 0 * Os_TE_579365 Os_TE_579365 Chr12 859958 859957 + ORSiTERTOOT00296 5553 0.0003 (1/2994) 0 * Os_TE_579366 Os_TE_579329 Chr12 842179 842180 - NDNA1TNA_OS 334 0.0003 (1/2925) 0 * * Os_TE_579318 Chr12 840033 839604 - MPING 430 0.0794 (236/2973) 1 Intact Os_TE_579317 Os_TE_579317 Chr12 839604 840033 + MPING 430 0.0773 (230/2975) 1 Intact Os_TE_579318 Os_TE_579313 Chr12 837970 837969 + INDITTO 263 0.0003 (1/2990) 0 * * Os_TE_579293 Chr12 832563 828828 + TWIFB1 3737 0.4659 (1334/2863) 1 Intact * Os_TE_579286 Chr12 825248 825249 - COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_579285 Os_TE_579285 Chr12 825244 825243 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_579286 Os_TE_579281 Chr12 820680 820681 + ORSiTERTOOT00296 5553 0.0007 (2/2985) 0 * Os_TE_579280 Os_TE_579280 Chr12 820676 820675 - SC-3_LTR 5748 0.0007 (2/2991) 0 * Os_TE_579281 Os_TE_579247 Chr12 807597 807596 - RETROSAT5_LTR 13878 0.0017 (5/2975) 0 * * Os_TE_579225 Chr12 799002 799003 + COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * * Os_TE_579168 Chr12 768824 768825 + COPI2_LTR 4733 0.0047 (14/2986) 0 * Os_TE_579167 Os_TE_579167 Chr12 768820 768819 - COPI2_LTR 4733 0.0034 (10/2982) 0 * Os_TE_579168 Os_TE_579166 Chr12 767333 767334 - RIREX_LTR 8828 0.0003 (1/2997) 0 * * Os_TE_579110 Chr12 751280 751279 + GYPSY-A_LTR 8951 0.0017 (5/2938) 0 * * Os_TE_579002 Chr12 721304 721305 + ORSiTERTOOT00296 5553 0.0003 (1/2991) 0 * * Os_TE_578951 Chr12 686136 686137 + RETROSAT2LTRA 3112 0.0011 (3/2753) 0 * * Os_TE_578922 Chr12 666243 666242 + SZ-40LTR 2465 0.0004 (1/2827) 0 * * Os_TE_578852 Chr12 620957 620956 + MPING 430 0.0003 (1/2952) 0 * * Os_TE_578838 Chr12 618541 618540 + RETRO1_LTR 8314 0.0010 (3/2993) 0 * * Os_TE_578801 Chr12 594997 590080 - ORSiTERTOOT00074 4935 0.7930 (705/889) 1 Intact Os_TE_578789 Os_TE_578789 Chr12 590080 594997 + ORSiTERTOOT00074 4935 0.7953 (711/894) 1 Intact Os_TE_578801 Os_TE_578758 Chr12 567079 567080 - RIRE2_LTR 11306 0.2656 (774/2914) 0 * * Os_TE_578736 Chr12 540495 540496 - LINE-4_OS 3662 0.0013 (4/2990) 0 * * Os_TE_578731 Chr12 528425 528426 + COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_578730 Os_TE_578730 Chr12 528421 528420 - COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_578731 Os_TE_578729 Chr12 527240 527241 + ORSiTERTOOT00402 2660 0.0003 (1/2987) 0 * Os_TE_578728 Os_TE_578728 Chr12 527236 527235 - ORSiTERTOOT00402 2660 0.0003 (1/2990) 0 * Os_TE_578729 Os_TE_578725 Chr12 526547 526546 + STOWAWAY51_OS 246 0.0017 (5/2991) 0 * Os_TE_578724 Os_TE_578724 Chr12 526541 526542 - STOWAWAY51_OS 246 0.0013 (4/2993) 0 * Os_TE_578725 Os_TE_578707 Chr12 516702 516703 - ORSiTERTOOT00368 5673 0.0806 (241/2990) 0 * * Os_TE_578704 Chr12 515831 515830 - ORSiTETNOOT00134 607 0.0703 (209/2971) 0 * * Os_TE_578657 Chr12 479449 479450 + RETRO1_LTR 8314 0.0007 (2/2860) 0 * Os_TE_578656 Os_TE_578656 Chr12 479445 479444 - RETRO1_LTR 8314 0.0007 (2/2859) 0 * Os_TE_578657 Os_TE_578566 Chr12 444673 444674 - RIRE2_LTR 11306 0.0017 (5/2985) 0 * Os_TE_578565 Os_TE_578565 Chr12 444669 444668 - ORSgTERT00201216 11284 0.0017 (5/2984) 0 * Os_TE_578566 Os_TE_578564 Chr12 443762 443763 + MPING 430 0.0003 (1/2981) 0 * Os_TE_578563 Os_TE_578563 Chr12 443760 443759 - MPING 430 0.0003 (1/2983) 0 * Os_TE_578564 Os_TE_578546 Chr12 432773 432772 - ORSgTEMT02000041 194 0.0020 (6/2980) 0 * * Os_TE_578493 Chr12 411793 411794 - RIREX_LTR 8828 0.0013 (4/2982) 0 * Os_TE_578492 Os_TE_578492 Chr12 411789 411788 + RIREX_LTR 8828 0.0010 (3/2977) 0 * Os_TE_578493 Os_TE_578478 Chr12 404689 404690 + OSTE20 496 0.0601 (171/2847) 0 * * Os_TE_578405 Chr12 367109 367110 + TRUNCATOR2_LTR 2904 0.0003 (1/2988) 0 * Os_TE_578404 Os_TE_578404 Chr12 367105 367104 - TRUNCATOR2_LTR 2904 0.0003 (1/2988) 0 * Os_TE_578405 Os_TE_578403 Chr12 366380 366381 + Cassandra_OS-LTR 764 0.0015 (4/2588) 0 * * Os_TE_578203 Chr12 238908 238909 + COPIA2-LTR_OS 6433 0.0003 (1/2962) 0 * * Os_TE_578178 Chr12 231803 231802 + RETROSAT2LTR 12796 0.0003 (1/2936) 0 * * Os_TE_578175 Chr12 231134 231135 + NDNA1TNA_OS 334 0.0017 (5/2935) 0 * * Os_TE_578157 Chr12 219834 219833 + AMYLTP 383 0.0003 (1/2899) 0 * * Os_TE_578151 Chr12 218227 218228 + RETRO1_LTR 8314 0.0007 (2/2922) 0 * * Os_TE_578107 Chr12 205450 205451 + TWIF 586 0.0113 (33/2919) 0 * Os_TE_578106 Os_TE_578106 Chr12 205443 205442 - ORSiTETNOOT00134 607 0.0110 (32/2906) 0 * Os_TE_578107 Os_TE_578104 Chr12 205283 205282 + MUDR1_OS 8052 0.3822 (1106/2894) 0 * * Os_TE_578103 Chr12 205036 205037 - RIREX_LTR 8828 0.0016 (3/1856) 0 * Os_TE_578102 Os_TE_578102 Chr12 205032 205031 + RIREX_LTR 8828 0.0011 (2/1858) 0 * Os_TE_578103 Os_TE_578101 Chr12 204616 204617 - TRUNCATOR2_LTR 2904 0.0928 (173/1865) 0 * Os_TE_578100 Os_TE_578100 Chr12 204612 204611 + TRUNCATOR2_LTR 2904 0.0916 (171/1866) 0 * Os_TE_578101 Os_TE_578098 Chr12 203825 203824 - SZ-43LTR 4039 0.0006 (1/1812) 0 * * Os_TE_578016 Chr12 167100 167101 - ORSgTETNOOT02417 265 0.1005 (187/1860) 0 * Os_TE_578015 Os_TE_578015 Chr12 167098 167097 - INDITTO 263 0.1005 (187/1861) 0 * Os_TE_578016 Os_TE_578001 Chr12 157133 160699 - ORSiTETNOOT00200 3563 0.0819 (151/1843) -1 Intact * Os_TE_712146 Chr11 29015819 29015818 - RIRE2_LTR 11306 0.0467 (74/1585) 0 * * Os_TE_712140 Chr11 29012534 29012535 - RIREX_LTR 8828 0.0006 (1/1640) 0 * * Os_TE_712137 Chr11 29011526 29011527 - RIREX_LTR 8828 0.0788 (129/1637) 0 * Os_TE_712136 Os_TE_712136 Chr11 29011522 29011521 + RIREX_LTR 8828 0.0793 (130/1640) 0 * Os_TE_712137 Os_TE_712123 Chr11 29004979 29004980 - RIRE2_LTR 11306 0.0012 (3/2476) 0 * Os_TE_712122 Os_TE_712122 Chr11 29004975 29004974 - ORSgTERT00201216 11284 0.0012 (3/2467) 0 * Os_TE_712123 Os_TE_712108 Chr11 29001239 29001240 - SINE03_OS 360 0.2094 (526/2512) 0 * * Os_TE_712101 Chr11 28994238 28994239 - SC-8_LTR 4951 0.0003 (1/2962) 0 * Os_TE_712100 Os_TE_712100 Chr11 28994234 28994233 + SC-8_LTR 4951 0.0003 (1/2967) 0 * Os_TE_712101 Os_TE_712087 Chr11 28986688 28986687 + MUJITOS1 3987 0.0003 (1/2943) 0 * * Os_TE_712085 Chr11 28986359 28986360 - COPIA2-LTR_OS 6433 0.0003 (1/2893) 0 * * Os_TE_712075 Chr11 28982994 28982995 + F569 228 0.0020 (6/2977) 0 * Os_TE_712074 Os_TE_712074 Chr11 28982992 28982991 - F569 228 0.0020 (6/2985) 0 * Os_TE_712075 Os_TE_712070 Chr11 28981896 28981897 + RIREX_LTR 8828 0.1367 (409/2991) 0 * Os_TE_712069 Os_TE_712069 Chr11 28981892 28981891 - RIREX_LTR 8828 0.1371 (410/2991) 0 * Os_TE_712070 Os_TE_712058 Chr11 28976059 28976060 + ORSiTERTOOT00296 5553 0.0003 (1/2989) 0 * Os_TE_712057 Os_TE_712057 Chr11 28976055 28976054 - SC-3_LTR 5748 0.0003 (1/2989) 0 * Os_TE_712058 Os_TE_712053 Chr11 28969439 28969440 - RETROSAT4_LTR 13504 0.0020 (6/2994) 0 * Os_TE_712052 Os_TE_712052 Chr11 28969435 28969434 + RETROSAT4_LTR 13504 0.0020 (6/2995) 0 * Os_TE_712053 Os_TE_712046 Chr11 28967473 28967474 + TESS 244 0.0044 (13/2987) 0 * Os_TE_712045 Os_TE_712045 Chr11 28967466 28967465 - TESS 244 0.0047 (14/2987) 0 * Os_TE_712046 Os_TE_712035 Chr11 28956348 28956349 - NDNA2TNA_OS 346 0.0010 (3/2918) 0 * * Os_TE_712034 Chr11 28955979 28955980 - OSTE20 496 0.0265 (79/2985) 0 * Os_TE_712033 Os_TE_712033 Chr11 28955975 28955974 - OSTE20 496 0.0268 (80/2982) 0 * Os_TE_712034 Os_TE_712026 Chr11 28951260 28951261 + SPMLIKE 10989 0.0003 (1/2996) 0 * * Os_TE_712021 Chr11 28950334 28950333 - TRUNCATOR 2918 0.0021 (6/2850) 0 * Os_TE_712020 Os_TE_712020 Chr11 28950333 28950334 + TRUNCATOR 2918 0.0028 (8/2861) 0 * Os_TE_712021 Os_TE_712019 Chr11 28950209 28950210 + RETRO2_LTR 12874 0.5900 (1731/2934) 0 * * Os_TE_712012 Chr11 28947520 28947519 - SC-3_LTR 5748 0.0037 (11/2989) 0 * * Os_TE_712010 Chr11 28946132 28946133 - RETROSAT2LTRA 3112 0.0197 (59/2997) 0 * * Os_TE_712008 Chr11 28945269 28945268 + SEVERIN-2 1952 0.0544 (162/2980) 0 * * Os_TE_711999 Chr11 28943829 28943828 - TRUNCATOR 2918 0.0017 (5/2989) 0 * * Os_TE_711987 Chr11 28939781 28939780 - CACTA-H 1152 0.0030 (9/2993) 0 * Os_TE_711986 Os_TE_711986 Chr11 28939780 28939781 + CACTA-B 1103 0.0030 (9/2991) 0 * Os_TE_711987 Os_TE_711985 Chr11 28937838 28937837 - RPO_OS 1983 0.0015 (4/2673) 0 * Os_TE_711984 Os_TE_711984 Chr11 28937837 28937838 + RPO_OS 1983 0.0019 (5/2620) 0 * Os_TE_711985 Os_TE_711981 Chr11 28936945 28936946 - ORSgTETNOOT02565 240 0.5762 (1727/2997) 0 * Os_TE_711980 Os_TE_711980 Chr11 28936942 28936941 + ORSiTEMT01000008 242 0.5759 (1719/2985) 0 * Os_TE_711981 Os_TE_711977 Chr11 28936374 28936375 - OLO24 345 0.0003 (1/2992) 0 * Os_TE_711976 Os_TE_711976 Chr11 28936372 28936371 + OLO24 345 0.0003 (1/2996) 0 * Os_TE_711977 Os_TE_711969 Chr11 28932067 28932068 - ORSgTEMT02400179 221 0.0020 (6/2997) 0 * Os_TE_711968 Os_TE_711968 Chr11 28932066 28932065 - TYPEM 227 0.0023 (7/2997) 0 * Os_TE_711969 Os_TE_711965 Chr11 28931457 28931458 + COPIA2-LTR_OS 6433 0.0728 (218/2996) 0 * Os_TE_711964 Os_TE_711964 Chr11 28931453 28931452 - COPIA2-LTR_OS 6433 0.0734 (220/2997) 0 * Os_TE_711965 Os_TE_711962 Chr11 28931317 28927726 - SZ-35LTR 3853 0.2621 (783/2987) 1 Intact * Os_TE_711955 Chr11 28927605 28927606 + RIREX_LTR 8828 0.0010 (3/2976) 0 * Os_TE_711954 Os_TE_711954 Chr11 28927601 28927600 - RIREX_LTR 8828 0.0007 (2/2969) 0 * Os_TE_711955 Os_TE_711941 Chr11 28926515 28926516 - RETRO1_LTR 8314 0.0013 (3/2330) 0 * * Os_TE_711922 Chr11 28920941 28920942 + RIREX_LTR 8828 0.0007 (2/2993) 0 * Os_TE_711921 Os_TE_711921 Chr11 28920937 28920936 - RIREX_LTR 8828 0.0007 (2/2994) 0 * Os_TE_711922 Os_TE_711919 Chr11 28920227 28919989 - ORSgTEMT01601432 239 0.2544 (760/2988) 1 Intact Os_TE_711918 Os_TE_711918 Chr11 28919989 28920227 - ORSgTEMT01600152 226 0.2540 (759/2988) 1 Intact Os_TE_711919 Os_TE_711915 Chr11 28918836 28918835 - ORSgTETN00200001 10994 0.0027 (8/2984) 0 * * Os_TE_711910 Chr11 28917782 28917781 + SZ-62LTR 3649 0.0010 (3/2917) 0 * * Os_TE_711901 Chr11 28917201 28917200 - ORSgTETN00200001 10994 0.0010 (3/2997) 0 * * Os_TE_711899 Chr11 28917116 28917117 - RETRO2A_LTR 12895 0.0247 (74/2991) 0 * Os_TE_711898 Os_TE_711898 Chr11 28917112 28917111 + RETRO2A_LTR 12895 0.0237 (71/2997) 0 * Os_TE_711899 Os_TE_711893 Chr11 28915284 28915283 - RETROSAT5_LTR 13878 0.0422 (125/2965) 0 * * Os_TE_711881 Chr11 28913451 28913450 + CACTA-G1 797 0.0408 (119/2919) 0 * * Os_TE_711873 Chr11 28912574 28912575 + RIREX_LTR 8828 0.0162 (48/2959) 0 * Os_TE_711872 Os_TE_711872 Chr11 28912570 28912569 - RIREX_LTR 8828 0.0166 (49/2960) 0 * Os_TE_711873 Os_TE_711871 Chr11 28912434 28912435 - ORSgTETN00200001 10994 0.0464 (137/2953) 0 * Os_TE_711870 Os_TE_711870 Chr11 28912432 28912431 + SPMLIKE 10989 0.0502 (149/2971) 0 * Os_TE_711871 Os_TE_711869 Chr11 28911364 28911365 + RIREX_LTR 8828 0.0007 (2/2890) 0 * Os_TE_711868 Os_TE_711868 Chr11 28911360 28911359 - RIREX_LTR 8828 0.0010 (3/2892) 0 * Os_TE_711869 Os_TE_711867 Chr11 28911067 28911068 - TYPEG 427 0.0021 (6/2842) 0 * Os_TE_711866 Os_TE_711866 Chr11 28911059 28911058 + TNR8-1 418 0.0021 (6/2829) 0 * Os_TE_711867 Os_TE_711860 Chr11 28910337 28910338 + RIREX_LTR 8828 0.0017 (5/2960) 0 * Os_TE_711859 Os_TE_711859 Chr11 28910333 28910332 - RIREX_LTR 8828 0.0020 (6/2959) 0 * Os_TE_711860 Os_TE_711851 Chr11 28908791 28908792 + SZ-35LTR 3853 0.0084 (24/2854) 0 * Os_TE_711850 Os_TE_711850 Chr11 28908787 28908786 - SZ-35LTR 3853 0.0102 (29/2840) 0 * Os_TE_711851 Os_TE_711846 Chr11 28908347 28908348 - RETRO1_LTR 8314 0.0021 (6/2913) 0 * Os_TE_711845 Os_TE_711845 Chr11 28908343 28908342 + RETRO2A_LTR 12895 0.0024 (7/2912) 0 * Os_TE_711846 Os_TE_711843 Chr11 28907859 28907860 - RIRE2_LTR 11306 0.0007 (2/2988) 0 * Os_TE_711842 Os_TE_711842 Chr11 28907855 28907854 - ORSgTERT00201216 11284 0.0010 (3/2989) 0 * Os_TE_711843 Os_TE_711839 Chr11 28907581 28907580 + AMYLTP 383 0.0010 (3/2987) 0 * * Os_TE_711830 Chr11 28905600 28905601 + SZ-40LTR 2465 0.0697 (207/2968) 0 * Os_TE_711829 Os_TE_711829 Chr11 28905596 28905595 - GYPSY-A_LTR 8951 0.0717 (213/2970) 0 * Os_TE_711830 Os_TE_711798 Chr11 28891017 28891018 + ORSgTETNOOT01219 231 0.0003 (1/2987) 0 * Os_TE_711797 Os_TE_711797 Chr11 28891010 28891009 + ORSgTETNOOT00908 242 0.0007 (2/2988) 0 * Os_TE_711798 Os_TE_711785 Chr11 28887369 28887368 + RIREX_LTR 8828 0.0083 (25/2995) 0 * * Os_TE_711781 Chr11 28885314 28885315 - ORSgTETN00200001 10994 0.0027 (8/2990) 0 * Os_TE_711780 Os_TE_711780 Chr11 28885312 28885311 + SPMLIKE 10989 0.0027 (8/2990) 0 * Os_TE_711781 Os_TE_711775 Chr11 28884936 28884935 + RIRE3_LTR 12054 0.0007 (2/2988) 0 * * Os_TE_711769 Chr11 28883267 28883266 - SZ-48LTR 3632 0.0033 (8/2433) 0 * * Os_TE_711740 Chr11 28873416 28873417 + COPIA2-LTR_OS 6433 0.0011 (3/2624) 0 * Os_TE_711739 Os_TE_711739 Chr11 28873412 28873411 - COPIA2-LTR_OS 6433 0.0010 (3/2944) 0 * Os_TE_711740 Os_TE_711734 Chr11 28872735 28872734 - COPI2_LTR 4733 0.0003 (1/2884) 0 * * Os_TE_711725 Chr11 28867668 28867669 - NDNA1TNA_OS 334 0.0081 (24/2957) 0 * * Os_TE_711716 Chr11 28867148 28867149 - TRUNCATOR2_LTR 2904 0.0078 (23/2947) 0 * * Os_TE_711713 Chr11 28866978 28866977 - RETRO2_LTR 12874 0.0004 (1/2747) 0 * * Os_TE_711702 Chr11 28864568 28864569 + RIRE3A_LTR 10580 0.0003 (1/2993) 0 * Os_TE_711701 Os_TE_711701 Chr11 28864564 28864563 - RIRE3A_LTR 10580 0.0003 (1/2996) 0 * Os_TE_711702 Os_TE_711700 Chr11 28864556 28864557 + COPIA2-LTR_OS 6433 0.0017 (5/2995) 0 * Os_TE_711699 Os_TE_711699 Chr11 28864552 28864551 - COPIA2-LTR_OS 6433 0.0017 (5/2995) 0 * Os_TE_711700 Os_TE_711696 Chr11 28863547 28863546 + SEVERIN-2 1952 0.0010 (3/2967) 0 * * Os_TE_711693 Chr11 28863030 28863031 + ORSiCMCM00100017 5674 0.0224 (56/2499) 0 * Os_TE_711692 Os_TE_711692 Chr11 28863026 28863025 - SZ-36LTR 5825 0.0229 (57/2485) 0 * Os_TE_711693 Os_TE_711670 Chr11 28854959 28854958 + ORSgTETNOOT00908 242 0.0010 (3/2985) 0 * * Os_TE_711653 Chr11 28845914 28845915 - TYPEM 227 0.0183 (54/2958) 0 * * Os_TE_711632 Chr11 28842716 28842715 - MPING 430 0.0011 (2/1837) 0 * * Os_TE_711630 Chr11 28840808 28840807 + ORSgTEMT00101674 340 0.0013 (4/2997) 0 * Os_TE_711629 Os_TE_711629 Chr11 28840807 28840808 + NDNA1TNA_OS 334 0.0032 (4/1242) 0 * Os_TE_711630 Os_TE_711620 Chr11 28827646 28827647 - COPI2_LTR 4733 0.0003 (1/2989) 0 * Os_TE_711619 Os_TE_711619 Chr11 28827642 28827641 + COPI2_LTR 4733 0.0003 (1/2984) 0 * Os_TE_711620 Os_TE_711617 Chr11 28826846 28826847 - NDNA1TNA_OS 334 0.0007 (2/2993) 0 * Os_TE_711616 Os_TE_711616 Chr11 28826844 28826843 + NDNA1TNA_OS 334 0.0007 (2/2984) 0 * Os_TE_711617 Os_TE_711615 Chr11 28826631 28826632 - RIREX_LTR 8828 0.0007 (2/2969) 0 * Os_TE_711614 Os_TE_711614 Chr11 28826627 28826626 + RIREX_LTR 8828 0.0007 (2/2968) 0 * Os_TE_711615 Os_TE_711613 Chr11 28826598 28826597 - NDNA1TNA_OS 334 0.0050 (15/2978) 0 * Os_TE_711611 Os_TE_711611 Chr11 28826586 28826587 + NDNA1TNA_OS 334 0.0050 (15/2987) 0 * Os_TE_711613 Os_TE_711608 Chr11 28825521 28825522 + RIREX_LTR 8828 0.0029 (8/2760) 0 * * Os_TE_711607 Chr11 28824617 28824616 + ORSgTETNOOT00032 218 0.0017 (5/2964) 0 * * Os_TE_711606 Chr11 28824347 28824348 + RIREX_LTR 8828 0.0043 (12/2759) 0 * * Os_TE_711591 Chr11 28818949 28818950 - GYPSY-A_LTR 8951 0.1157 (67/579) -1 * * Os_TE_711588 Chr11 28816251 28816252 - SEVERIN-2 1952 0.0342 (95/2778) 0 * * Os_TE_711565 Chr11 28798921 28798922 + COPI2_LTR 4733 0.0020 (6/2986) 0 * Os_TE_711564 Os_TE_711564 Chr11 28798917 28798916 - COPI2_LTR 4733 0.0020 (6/2990) 0 * Os_TE_711565 Os_TE_711561 Chr11 28798079 28798080 - COPI2_LTR 4733 0.0833 (245/2942) 0 * Os_TE_711560 Os_TE_711560 Chr11 28798075 28798074 + COPI2_LTR 4733 0.0873 (258/2954) 0 * Os_TE_711561 Os_TE_711559 Chr11 28796915 28796916 - MDR2 6967 0.0003 (1/2988) 0 * Os_TE_711558 Os_TE_711558 Chr11 28796907 28796906 + MDR2 6967 0.0003 (1/2988) 0 * Os_TE_711559 Os_TE_711557 Chr11 28796803 28796804 - AMYLTP 383 0.0308 (92/2987) 0 * Os_TE_711556 Os_TE_711556 Chr11 28796794 28796793 + AMYLTP 383 0.0323 (93/2878) 0 * Os_TE_711557 Os_TE_711536 Chr11 28795583 28795582 + NDNA1TNA_OS 334 0.1235 (369/2988) 0 * Os_TE_711535 Os_TE_711535 Chr11 28795582 28795583 + ORSgTEMT00101674 340 0.1227 (366/2984) 0 * Os_TE_711536 Os_TE_711534 Chr11 28795525 28795526 + DS-RICE4N 715 0.0316 (94/2975) 0 * * Os_TE_711531 Chr11 28794972 28794973 + ORSgTETNOOT01668 244 0.0003 (1/2988) 0 * * Os_TE_711527 Chr11 28792733 28792734 + OSTE18 129 0.0003 (1/2987) 0 * * Os_TE_711524 Chr11 28790509 28790510 - ORSgTERT00201216 11284 0.1408 (240/1704) 0 * Os_TE_711523 Os_TE_711523 Chr11 28790505 28790504 - RIRE2_LTR 11306 0.0936 (271/2895) 0 * Os_TE_711524 Os_TE_711522 Chr11 28790481 28790482 - RIRE2_LTR 11306 0.0951 (275/2892) 0 * * Os_TE_711520 Chr11 28789995 28789994 - ORSgTEMT01400022 212 0.0865 (258/2981) 0 * Os_TE_711519 Os_TE_711519 Chr11 28789991 28789992 + ORSgTEMT01400031 216 0.0941 (282/2998) 0 * Os_TE_711520 Os_TE_711518 Chr11 28789098 28789099 + TRUNCATOR2_LTR 2904 0.2713 (810/2986) 0 * Os_TE_711517 Os_TE_711517 Chr11 28789094 28789093 - TRUNCATOR2_LTR 2904 0.2780 (830/2986) 0 * Os_TE_711518 Os_TE_711510 Chr11 28788426 28788427 - ORSgTEMT01400014 209 0.0944 (280/2965) 0 * * Os_TE_711509 Chr11 28788389 28788388 - TYPEM 227 0.0003 (1/2943) 0 * * Os_TE_711508 Chr11 28787839 28787840 - ORSiTEMT01300001 950 0.1278 (381/2981) 0 * Os_TE_711507 Os_TE_711507 Chr11 28787834 28787833 + KRISPIE 956 0.1372 (375/2734) 0 * Os_TE_711508 Os_TE_711506 Chr11 28787833 28787834 - KRISPIE 956 0.1276 (381/2987) 0 * * Os_TE_711494 Chr11 28782029 28782028 + INDITTO 263 0.0020 (6/2989) 0 * * Os_TE_711488 Chr11 28779701 28779702 + HELITRON8_OS 8831 0.0003 (1/2871) 0 * * Os_TE_711487 Chr11 28779681 28779682 + SEVERIN-2 1952 0.0282 (80/2834) 0 * * Os_TE_711486 Chr11 28779602 28779603 - RIRE2_LTR 11306 0.1443 (426/2952) 0 * Os_TE_711485 Os_TE_711485 Chr11 28779598 28779597 - ORSgTERT00201216 11284 0.1425 (378/2653) 0 * Os_TE_711486 Os_TE_711477 Chr11 28776314 28776315 + ORSgTETNOOT01219 231 0.0007 (2/2992) 0 * * Os_TE_711472 Chr11 28774031 28774032 + RIREX_LTR 8828 0.0043 (13/2989) 0 * * Os_TE_711471 Chr11 28773705 28773706 + SEVERIN-2 1952 0.2058 (614/2983) 0 * * Os_TE_711469 Chr11 28773646 28773647 - TYPEM 227 0.0107 (32/2987) 0 * * Os_TE_711460 Chr11 28770200 28770201 - ORSgTERT00201216 11284 0.0003 (1/2991) 0 * Os_TE_711459 Os_TE_711459 Chr11 28770196 28770195 - RIRE2_LTR 11306 0.0003 (1/2991) 0 * Os_TE_711460 Os_TE_711451 Chr11 28768279 28768280 - SZ-62LTR 3649 0.0003 (1/2996) 0 * Os_TE_711450 Os_TE_711450 Chr11 28768275 28768274 + SZ-62LTR 3649 0.0003 (1/2987) 0 * Os_TE_711451 Os_TE_711449 Chr11 28767908 28767909 - NDNA1TNA_OS 334 0.0040 (12/2992) 0 * Os_TE_711448 Os_TE_711448 Chr11 28767906 28767905 + NDNA1TNA_OS 334 0.0040 (12/2990) 0 * Os_TE_711449 Os_TE_711447 Chr11 28766002 28766003 - ORSgTERT00201216 11284 0.0007 (2/2948) 0 * Os_TE_711446 Os_TE_711446 Chr11 28765998 28765997 - RIRE2_LTR 11306 0.0007 (2/2978) 0 * Os_TE_711447 Os_TE_711434 Chr11 28764351 28764350 + ORSgTETNOOT00544 147 0.0020 (6/2961) 0 * * Os_TE_711432 Chr11 28762355 28762354 + STOWAWAY51_OS 246 0.0007 (2/2979) 0 * Os_TE_711431 Os_TE_711431 Chr11 28762349 28762350 - STOWAWAY51_OS 246 0.0007 (2/2979) 0 * Os_TE_711432 Os_TE_711419 Chr11 28758841 28758840 - ORSiTERT00100062 5674 0.0041 (12/2957) 0 * * Os_TE_711415 Chr11 28758071 28758072 + SEVERIN-2 1952 0.0004 (1/2243) 0 * * Os_TE_711413 Chr11 28757915 28757916 + STOWAWAY45_OS 266 0.0005 (1/2158) 0 * * Os_TE_711412 Chr11 28757731 28757730 + ORSiTERTOOT00028 8600 0.0007 (2/2964) 0 * * Os_TE_711410 Chr11 28755895 28755896 + RETROSAT4_LTR 13504 0.1222 (346/2832) 0 * Os_TE_711409 Os_TE_711409 Chr11 28755891 28755890 - SZ-35LTR 3853 0.1323 (376/2841) 0 * Os_TE_711410 Os_TE_711405 Chr11 28754071 28754072 + RIRE2_LTR 11306 0.0007 (2/2988) 0 * * Os_TE_711396 Chr11 28752996 28752995 + STOWAWAY11_OS 292 0.3222 (919/2852) 0 * Os_TE_711395 Os_TE_711395 Chr11 28752995 28752996 - STOWAWAY11_OS 292 0.3165 (900/2844) 0 * Os_TE_711396 Os_TE_711393 Chr11 28752298 28752297 + ORSgTEMT01400031 216 0.0400 (107/2673) 0 * Os_TE_711392 Os_TE_711392 Chr11 28752294 28752295 - ORSgTEMT01400022 212 0.0330 (89/2698) 0 * Os_TE_711393 Os_TE_711386 Chr11 28751208 28751209 - RIRE2_LTR 11306 0.0989 (290/2933) 0 * Os_TE_711385 Os_TE_711385 Chr11 28751204 28751203 + RIRE2_LTR 11306 0.1001 (294/2938) 0 * Os_TE_711386 Os_TE_711383 Chr11 28750639 28750640 - SZ-48LTR 3632 0.0040 (12/2987) 0 * Os_TE_711382 Os_TE_711382 Chr11 28750635 28750634 + SZ-48LTR 3632 0.0042 (12/2883) 0 * Os_TE_711383 Os_TE_711380 Chr11 28750386 28750387 - SZ-48LTR 3632 0.1026 (300/2923) 0 * Os_TE_711379 Os_TE_711379 Chr11 28750382 28750381 + SZ-48LTR 3632 0.0981 (291/2966) 0 * Os_TE_711380 Os_TE_711378 Chr11 28750359 28750360 - RIREX_LTR 8828 0.1730 (515/2977) 0 * Os_TE_711377 Os_TE_711377 Chr11 28750355 28750354 - RIREX_LTR 8828 0.1784 (526/2948) 0 * Os_TE_711378 Os_TE_711375 Chr11 28749609 28749610 - RETROSAT4_LTR 13504 0.0710 (211/2973) 0 * * Os_TE_711371 Chr11 28749099 28749100 + RIREX_LTR 8828 0.0024 (7/2889) 0 * Os_TE_711370 Os_TE_711370 Chr11 28749095 28749094 - RIREX_LTR 8828 0.0024 (7/2894) 0 * Os_TE_711371 Os_TE_711369 Chr11 28747541 28747784 + ORSgTETNOOT01668 244 0.0073 (21/2882) 1 Intact * Os_TE_711367 Chr11 28747112 28747111 + RIREX_LTR 8828 0.0055 (16/2901) 0 * * Os_TE_711366 Chr11 28747101 28747102 + RETROSAT4_LTR 13504 0.0014 (4/2898) 0 * * Os_TE_711364 Chr11 28746736 28744204 + TRUNCATOR 2918 0.6437 (1863/2894) 1 Intact * Os_TE_711362 Chr11 28743893 28743894 + RETROSAT4_LTR 13504 0.0008 (2/2652) 0 * Os_TE_711361 Os_TE_711361 Chr11 28743889 28743888 - SZ-35LTR 3853 0.0015 (4/2670) 0 * Os_TE_711362 Os_TE_711360 Chr11 28743794 28743793 + GYPSY-A_LTR 8951 0.0063 (16/2538) 0 * * Os_TE_711352 Chr11 28741527 28741526 - ORSgTEMT00100986 341 0.0004 (1/2838) 0 * * Os_TE_711350 Chr11 28740605 28740606 + SEVERIN-2 1952 0.0003 (1/2885) 0 * * Os_TE_711346 Chr11 28739004 28739005 - SZ-35LTR 3853 0.0107 (30/2812) 0 * * Os_TE_711345 Chr11 28738995 28738994 + ORSgTETNOOT01668 244 0.0627 (177/2821) 0 * * Os_TE_711337 Chr11 28737943 28737944 + SZ-48LTR 3632 0.0157 (45/2866) 0 * Os_TE_711336 Os_TE_711336 Chr11 28737939 28737938 - SZ-48LTR 3632 0.0163 (45/2768) 0 * Os_TE_711337 Os_TE_711335 Chr11 28737025 28737026 + RIRE3A_LTR 10580 0.0146 (41/2803) 0 * Os_TE_711334 Os_TE_711334 Chr11 28737021 28737020 - RIRE3A_LTR 10580 0.0155 (45/2904) 0 * Os_TE_711335 Os_TE_711329 Chr11 28735951 28735950 - COPIA2-LTR_OS 6433 0.0007 (2/2815) 0 * * Os_TE_711328 Chr11 28735601 28735600 + ORSgTETNOOT00921 149 0.0007 (1/1397) 0 * * Os_TE_711326 Chr11 28735201 28735200 + RETRO2A_LTR 12895 0.2288 (313/1368) 0 * * Os_TE_711324 Chr11 28734736 28734737 - RETROSAT4_LTR 13504 0.0014 (2/1383) 0 * * Os_TE_711320 Chr11 28732780 28732781 - ORSgTEMT01600578 239 0.4336 (1221/2816) 0 * * Os_TE_711319 Chr11 28732690 28732691 + SC-1_LTR 6888 0.0041 (12/2901) 0 * * Os_TE_711317 Chr11 28732134 28732133 + ORSgTEMT00101674 340 0.0481 (143/2972) 0 * * Os_TE_711314 Chr11 28731666 28731665 - RPO_OS 1983 0.0015 (2/1291) 0 * * Os_TE_711312 Chr11 28731196 28731197 + SZ-48LTR 3632 0.0019 (3/1545) 0 * * Os_TE_711306 Chr11 28729074 28729075 + RETROSAT4_LTR 13504 0.0174 (48/2756) 0 * Os_TE_711305 Os_TE_711305 Chr11 28729070 28729069 - RETROSAT4_LTR 13504 0.0300 (54/1799) 0 * Os_TE_711306 Os_TE_711304 Chr11 28728871 28728870 - SEVERIN-2 1952 0.0014 (4/2957) 0 * * Os_TE_711301 Chr11 28728651 28728650 - COPIA2-LTR_OS 6433 0.0179 (53/2968) 0 * * Os_TE_711297 Chr11 28726896 28726659 - ORSgTEMT01601208 238 0.8421 (1701/2020) 1 Intact * Os_TE_711292 Chr11 28726402 28726403 - RETROSAT4_LTR 13504 0.0010 (2/1978) 0 * * Os_TE_711290 Chr11 28725609 28725610 - AMYLTP 383 0.0017 (5/2873) 0 * * Os_TE_711285 Chr11 28724802 28724803 - MuDR3_OS 8604 0.0024 (7/2958) 0 * * Os_TE_711284 Chr11 28724291 28724292 - TYPEU1 380 0.0309 (91/2941) 0 * * Os_TE_711283 Chr11 28724262 28724263 - RETROFIT_LTR 4866 0.0003 (1/2890) 0 * Os_TE_711282 Os_TE_711282 Chr11 28724259 28724258 + ORSiTERTOOT00033 4884 0.0004 (1/2795) 0 * Os_TE_711283 Os_TE_711277 Chr11 28722533 28722534 + ORSgTEMT01602181 239 0.0256 (72/2815) 0 * * Os_TE_711273 Chr11 28722107 28722108 + TNR2A 152 0.0035 (6/1693) 0 * * Os_TE_711270 Chr11 28721597 28721449 + STOWAWAY47_OS 148 0.6437 (1734/2694) 1 Intact * Os_TE_711255 Chr11 28715937 28715938 + MUDR_N7_OS 1283 0.0003 (1/2993) 0 * Os_TE_711254 Os_TE_711254 Chr11 28715929 28715928 - MUDR_N7_OS 1283 0.0003 (1/2931) 0 * Os_TE_711255 Os_TE_711253 Chr11 28714827 28714828 - ORSgTEMT00500167 148 0.0003 (1/2925) 0 * * Os_TE_711251 Chr11 28714527 28714768 + STOWAWAY42_OS 242 0.6692 (1752/2618) 1 Intact * Os_TE_711228 Chr11 28707014 28707015 - TRUNCATOR2_LTR 2904 0.0245 (43/1752) 0 * Os_TE_711227 Os_TE_711227 Chr11 28707010 28707009 + TRUNCATOR2_LTR 2904 0.0210 (46/2188) 0 * Os_TE_711228 Os_TE_711225 Chr11 28706111 28706110 - OSTE21 1271 0.0010 (3/2957) 0 * Os_TE_711224 Os_TE_711224 Chr11 28706103 28706104 - OSTE21 1271 0.0007 (2/2962) 0 * Os_TE_711225 Os_TE_711222 Chr11 28703811 28703810 + RIREX_LTR 8828 0.0013 (4/2983) 0 * * Os_TE_711216 Chr11 28700708 28700709 + MuDR2_OS 6770 0.0011 (3/2671) 0 * Os_TE_711215 Os_TE_711215 Chr11 28700700 28700699 - MuDR2_OS 6770 0.0015 (3/2030) 0 * Os_TE_711216 Os_TE_711214 Chr11 28700652 28700651 + ORSgTEMT00900319 250 0.0332 (97/2920) 0 * Os_TE_711213 Os_TE_711213 Chr11 28700651 28700652 - DITTO 244 0.0321 (85/2647) 0 * Os_TE_711214 Os_TE_711210 Chr11 28700283 28700284 + ORSgTETNOOT01219 231 0.0006 (1/1706) 0 * * Os_TE_711207 Chr11 28699478 28699152 + NDNA1TNA_OS 334 0.7232 (1709/2363) 1 Intact Os_TE_711205 Os_TE_711205 Chr11 28699149 28699478 + ORSgTEMT00100272 356 0.6512 (1727/2652) 1 Intact Os_TE_711207 Os_TE_711202 Chr11 28698060 28699062 + OSTE15 1168 0.7702 (1632/2119) 1 Intact * Os_TE_711195 Chr11 28697818 28697571 + ORSgTEMT00901798 232 0.6114 (1693/2769) 1 Intact Os_TE_711193 Os_TE_711193 Chr11 28697578 28697818 + ORSgTEMT00900079 241 0.6218 (1723/2771) 1 Intact Os_TE_711195 Os_TE_711190 Chr11 28695957 28695956 + SEVERIN-2 1952 0.0423 (75/1773) 0 * * Os_TE_711186 Chr11 28695810 28695811 - RIREX_LTR 8828 0.0011 (2/1745) 0 * * Os_TE_711182 Chr11 28695064 28695063 - TREP215 239 0.0395 (73/1846) 0 * * Os_TE_711177 Chr11 28692885 28692886 - ORSgTETN00200001 10994 0.0011 (2/1764) 0 * Os_TE_711176 Os_TE_711176 Chr11 28692883 28692882 + SPMLIKE 10989 0.0011 (2/1759) 0 * Os_TE_711177 Os_TE_711175 Chr11 28692876 28692875 - RIRE2_LTR 11306 0.0017 (3/1761) 0 * * Os_TE_711174 Chr11 28692017 28692018 - CACTA-P 1150 0.0375 (69/1840) 0 * * Os_TE_711155 Chr11 28687173 28687172 - STOWAWAY45_OS 266 0.0311 (75/2415) 0 * * Os_TE_711141 Chr11 28682029 28682030 + RIREX_LTR 8828 0.0282 (52/1842) 0 * Os_TE_711140 Os_TE_711140 Chr11 28682025 28682024 - RIREX_LTR 8828 0.0287 (53/1845) 0 * Os_TE_711141 Os_TE_711139 Chr11 28681614 28681613 - BAJIELTR 4500 0.0022 (4/1830) 0 * * Os_TE_711132 Chr11 28679269 28679268 - ORSgTEMT01602413 239 0.0023 (4/1734) 0 * * Os_TE_711087 Chr11 28663943 28663944 + ORSiTERTOOT00027 10853 0.0013 (3/2394) 0 * * Os_TE_711077 Chr11 28660669 28660668 - ORSiTEMT01000008 242 0.0436 (79/1813) 0 * * Os_TE_711076 Chr11 28660556 28660557 - SZ-62LTR 3649 0.0021 (6/2812) 0 * * Os_TE_711073 Chr11 28660380 28660379 - STOWAWAY12_OS 312 0.0415 (75/1809) 0 * * Os_TE_711072 Chr11 28660343 28660342 - STOWAWAY13_OS 251 0.0396 (72/1817) 0 * * Os_TE_711071 Chr11 28660300 28660299 + YOUREN 286 0.0430 (77/1792) 0 * * Os_TE_711069 Chr11 28660218 28660219 - STOWAWAY14_OS 258 0.0022 (4/1817) 0 * Os_TE_711068 Os_TE_711068 Chr11 28660216 28660215 + STOWAWAY14_OS 258 0.0020 (4/1990) 0 * Os_TE_711069 Os_TE_711061 Chr11 28658806 28659831 - SINE03_OS 360 0.8525 (1798/2109) 1 Intact * Os_TE_711041 Chr11 28652813 28652814 + COPIA2-LTR_OS 6433 0.0017 (5/2990) 0 * * Os_TE_711039 Chr11 28652193 28652194 - RIRE2_LTR 11306 0.0007 (2/2808) 0 * Os_TE_711038 Os_TE_711038 Chr11 28652189 28652188 - ORSgTERT00201216 11284 0.0007 (2/2817) 0 * Os_TE_711039 Os_TE_711011 Chr11 28640645 28640644 - RIRE2_LTR 11306 0.0017 (3/1751) 0 * * Os_TE_710991 Chr11 28627957 28627958 + RIREX_LTR 8828 0.0016 (3/1859) 0 * * Os_TE_710989 Chr11 28627553 28627554 + ORSgTERTOOT00009 12852 0.3072 (569/1852) 0 * Os_TE_710988 Os_TE_710988 Chr11 28627549 28627548 - RETRO2_LTR 12874 0.3081 (578/1876) 0 * Os_TE_710989 Os_TE_710982 Chr11 28625977 28625682 - ORSgTEMT00101174 225 0.5590 (1459/2610) 1 Intact * Os_TE_710979 Chr11 28625350 28625351 + SPMLIKE 10989 0.0011 (2/1749) 0 * Os_TE_710978 Os_TE_710978 Chr11 28625348 28625347 - ORSgTETN00200001 10994 0.0007 (2/2678) 0 * Os_TE_710979 Os_TE_710938 Chr11 28520133 28520134 + RIREX_LTR 8828 0.0042 (5/1179) 0 * Os_TE_710937 Os_TE_710937 Chr11 28520129 28520128 - RIREX_LTR 8828 0.0034 (4/1179) 0 * Os_TE_710938 Os_TE_710936 Chr11 28519558 28519559 - F569 228 0.0147 (17/1158) 0 * Os_TE_710935 Os_TE_710935 Chr11 28519556 28519555 + F569 228 0.0138 (16/1158) 0 * Os_TE_710936 Os_TE_710921 Chr11 28507771 28507772 + RIREX_LTR 8828 0.0026 (4/1514) 0 * Os_TE_710920 Os_TE_710920 Chr11 28507767 28507766 - RIREX_LTR 8828 0.0020 (3/1521) 0 * Os_TE_710921 Os_TE_710902 Chr11 28500868 28500869 - MuDR2_OS 6770 0.0120 (18/1505) 0 * Os_TE_710901 Os_TE_710901 Chr11 28500859 28500858 + MuDR2_OS 6770 0.0112 (17/1512) 0 * Os_TE_710902 Os_TE_710894 Chr11 28492400 28492401 + RETROSAT4_LTR 13504 0.0927 (140/1510) 0 * Os_TE_710893 Os_TE_710893 Chr11 28492396 28492395 - SZ-35LTR 3853 0.0984 (149/1514) 0 * Os_TE_710894 Os_TE_710892 Chr11 28491278 28491279 - RETROSAT2LTRA 3112 0.0093 (14/1513) 0 * Os_TE_710891 Os_TE_710891 Chr11 28491274 28491273 - RETROSAT2LTRA 3112 0.0092 (14/1515) 0 * Os_TE_710892 Os_TE_710890 Chr11 28491006 28491007 + RETROSAT4_LTR 13504 0.1416 (244/1723) 0 * * Os_TE_710888 Chr11 28488694 28488693 - MuDR4_OS 7610 0.0799 (140/1753) 0 * * Os_TE_710882 Chr11 28487906 28487907 - ENSPM4_OS 11610 0.1048 (182/1736) 0 * * Os_TE_710878 Chr11 28487152 28487153 - STOWAWAY43_OS 233 0.0320 (85/2659) 0 * * Os_TE_710863 Chr11 28483144 28483143 - ORSgTEMT01602413 239 0.0019 (4/2120) 0 * * Os_TE_710852 Chr11 28481683 28481684 - MuDR2_OS 6770 0.0014 (4/2782) 0 * * Os_TE_710850 Chr11 28481514 28481513 - RIREX_LTR 8828 0.0004 (1/2659) 0 * * Os_TE_710847 Chr11 28481014 28481013 - ENSPM4_OS 11610 0.0557 (161/2893) 0 * * Os_TE_710841 Chr11 28479286 28479287 + SZ-62LTR 3649 0.0026 (4/1551) 0 * * Os_TE_710838 Chr11 28478867 28478866 - RETROSAT4_LTR 13504 0.0269 (54/2009) 0 * * Os_TE_710809 Chr11 28460493 28460492 - ORSgTEMT00901138 254 0.3881 (931/2399) 0 * * Os_TE_710802 Chr11 28459797 28459798 - ORSgTEMT02400246 177 0.0179 (29/1621) 0 * * Os_TE_710796 Chr11 28458881 28458882 - RETRO2_LTR 12874 0.0883 (116/1314) 0 * Os_TE_710795 Os_TE_710795 Chr11 28458877 28458876 + RETRO2_LTR 12874 0.0832 (109/1310) 0 * Os_TE_710796 Os_TE_710793 Chr11 28457490 28457375 - ORSgTETNOOT02090 135 0.8361 (1122/1342) 1 Intact Os_TE_710792 Os_TE_710792 Chr11 28457383 28457487 + ORSgTEMT00500852 140 0.8144 (1119/1374) 1 Intact Os_TE_710793 Os_TE_710777 Chr11 28453700 28453701 - ORSiTERTOOT00363 4650 0.0015 (3/1972) 0 * * Os_TE_710758 Chr11 28450312 28450311 + COPIA2-LTR_OS 6433 0.0006 (1/1776) 0 * * Os_TE_710754 Chr11 28447558 28447557 - ORSiTERT00100062 5674 0.0004 (1/2352) 0 * * Os_TE_710744 Chr11 28440883 28440882 - INDITTO 263 0.0731 (112/1533) 0 * * Os_TE_710741 Chr11 28440646 28440647 + SZ-22_LTR 4403 0.0046 (7/1523) 0 * * Os_TE_710718 Chr11 28430746 28430747 + ID-4 284 0.0017 (5/2968) 0 * Os_TE_710717 Os_TE_710717 Chr11 28430740 28430739 + ORSgTEMT04600037 279 0.0014 (4/2932) 0 * Os_TE_710718 Os_TE_710716 Chr11 28430593 28430594 + CACTA-I 1124 0.0101 (16/1587) 0 * Os_TE_710715 Os_TE_710715 Chr11 28430591 28430590 - SPMLIKE 10989 0.0074 (14/1885) 0 * Os_TE_710716 Os_TE_710711 Chr11 28429280 28429279 + RETRO2A_LTR 12895 0.0008 (1/1257) 0 * * Os_TE_710710 Chr11 28429113 28429112 + MUDRN1_OS 764 0.1183 (164/1386) 0 * * Os_TE_710707 Chr11 28427633 28427632 - ORSgTEMT01601696 238 0.0008 (1/1188) 0 * Os_TE_710706 Os_TE_710706 Chr11 28427630 28427631 - ORSgTEMT01601696 238 0.0013 (1/761) 0 * Os_TE_710707 Os_TE_710681 Chr11 28404808 28404807 - RPO_OS 1983 0.0016 (1/629) 0 * * Os_TE_710680 Chr11 28404604 28404603 - SEVERIN-2 1952 0.0812 (50/616) 0 * * Os_TE_710648 Chr11 28380369 28380368 - Cassandra_OS-LTR 764 0.1626 (166/1021) 0 * * Os_TE_710643 Chr11 28377603 28377604 + SC-8_LTR 4951 0.0032 (2/622) 0 * Os_TE_710642 Os_TE_710642 Chr11 28377599 28377598 - SC-8_LTR 4951 0.0032 (2/618) 0 * Os_TE_710643 Os_TE_710630 Chr11 28368629 28368630 + ORSgTEMT00900053 249 0.0009 (1/1068) 0 * * Os_TE_710629 Chr11 28368310 28368311 + ORSgTEMT01602119 229 0.0078 (11/1410) 0 * * Os_TE_710617 Chr11 28366818 28366819 + RETROSAT4_LTR 13504 0.2573 (248/964) 0 * * Os_TE_710608 Chr11 28365165 28365166 + F569 228 0.0042 (6/1418) 0 * * Os_TE_710605 Chr11 28364732 28364733 + BAJIELTR 4500 0.0007 (1/1420) 0 * * Os_TE_710603 Chr11 28364286 28364287 + ENSPM6_OS 9815 0.0014 (2/1423) 0 * Os_TE_710602 Os_TE_710602 Chr11 28364284 28364283 - ENSPM5_OS 9581 0.0014 (2/1437) 0 * Os_TE_710603 Os_TE_710595 Chr11 28363150 28362767 + AMYLTP 383 0.8720 (286/328) 1 Intact * Os_TE_710592 Chr11 28360945 28360712 + ORSgTEMT01601122 212 0.0486 (68/1399) 1 Intact * Os_TE_710587 Chr11 28357780 28357779 - RPO_OS 1983 0.7981 (502/629) 0 * * Os_TE_710576 Chr11 28351595 28351596 + ORSgTEMT01601934 207 0.0067 (13/1927) 0 * * Os_TE_710575 Chr11 28351542 28351366 - F118 179 0.5269 (1018/1932) 1 Intact * Os_TE_710573 Chr11 28351304 28351305 + RIREX_LTR 8828 0.0052 (10/1935) 0 * Os_TE_710572 Os_TE_710572 Chr11 28351300 28351299 - RIREX_LTR 8828 0.0082 (12/1469) 0 * Os_TE_710573 Os_TE_710571 Chr11 28351172 28351171 + ORSgTEMT01600650 234 0.0068 (13/1914) 0 * * Os_TE_710566 Chr11 28349585 28349584 - RPO_OS 1983 0.0053 (13/2448) 0 * Os_TE_710565 Os_TE_710565 Chr11 28349584 28349585 + RPO_OS 1983 0.0131 (13/994) 0 * Os_TE_710566 Os_TE_710563 Chr11 28349231 28349230 - ATLANTYS-LTR_OS 13740 0.0194 (21/1084) 0 * * Os_TE_710519 Chr11 28325834 28325835 + SINE1OS 127 0.0095 (2/211) 0 * * Os_TE_710517 Chr11 28324130 28324131 + RIRE2_LTR 11306 0.1100 (22/200) 0 * * Os_TE_710492 Chr11 28314933 28314932 + RETRO2A_LTR 12895 0.0329 (42/1275) 0 * * Os_TE_710481 Chr11 28311152 28311298 + ORSgTEMT01701591 154 0.6738 (188/279) 1 Intact * Os_TE_710453 Chr11 28299082 28299081 + STOWAWAY51_OS 246 0.0281 (36/1280) 0 * Os_TE_710452 Os_TE_710452 Chr11 28299076 28299077 + ORSgTEMT01601591 242 0.2038 (32/157) 0 * Os_TE_710453 Os_TE_710436 Chr11 28293448 28293449 - TRUNCATOR2_LTR 2904 0.2500 (39/156) 0 * * Os_TE_710365 Chr11 28262352 28261415 - CACTA-F 1118 0.2164 (111/513) 1 Intact * Os_TE_710360 Chr11 28261212 28261211 + ORSiTETNOOT00107 906 0.0575 (5/87) 0 * Os_TE_710359 Os_TE_710359 Chr11 28261209 28261210 - ORSiTETNOOT00107 906 0.0575 (5/87) 0 * Os_TE_710360 Os_TE_710351 Chr11 28255052 28254712 - ORSgTEMT00101432 336 0.7289 (656/900) 1 Intact * Os_TE_710308 Chr11 28240385 28240386 - ORSgTEMT00901071 248 0.0561 (95/1694) 0 * * Os_TE_710305 Chr11 28238970 28238971 - SEVERIN-2 1952 0.0025 (5/1975) 0 * * Os_TE_710301 Chr11 28235422 28235421 - LINE-4_OS 3662 0.0059 (9/1517) 0 * * Os_TE_710277 Chr11 28223907 28223908 - RPO_OS 1983 0.0210 (15/715) 0 * * Os_TE_710275 Chr11 28222132 28222133 + RIRE2_LTR 11306 0.0020 (3/1520) 0 * Os_TE_710274 Os_TE_710274 Chr11 28222128 28222127 - RIRE2_LTR 11306 0.0024 (3/1255) 0 * Os_TE_710275 Os_TE_710270 Chr11 28219414 28219413 + ORSgTEMT01701265 147 0.1257 (110/875) 0 * * Os_TE_710258 Chr11 28215340 28215341 - COPI2_LTR 4733 0.0015 (3/1947) 0 * Os_TE_710257 Os_TE_710257 Chr11 28215336 28215335 + COPI2_LTR 4733 0.0015 (3/1945) 0 * Os_TE_710258 Os_TE_710247 Chr11 28214090 28214091 + SPMLIKE 10989 0.0299 (57/1908) 0 * * Os_TE_710245 Chr11 28213976 28213977 - MPING 430 0.0005 (1/1883) 0 * * Os_TE_710243 Chr11 28213789 28213790 + RIRE2_LTR 11306 0.0006 (1/1540) 0 * Os_TE_710242 Os_TE_710242 Chr11 28213785 28213784 - RIRE2_LTR 11306 0.0005 (1/1885) 0 * Os_TE_710243 Os_TE_710241 Chr11 28213764 28213765 - ORSgTETN00200001 10994 0.3970 (746/1879) 0 * Os_TE_710240 Os_TE_710240 Chr11 28213763 28213762 + SPMLIKE 10989 0.4059 (770/1897) 0 * Os_TE_710241 Os_TE_710239 Chr11 28213636 28213637 - ORSgTEMT01601834 234 0.0016 (3/1890) 0 * * Os_TE_710198 Chr11 28178104 28178245 + TELIA 141 0.8975 (1252/1395) 1 Intact * Os_TE_710148 Chr11 28165969 28165968 - ORSgTEMT01601432 239 0.0034 (8/2339) 0 * Os_TE_710147 Os_TE_710147 Chr11 28165966 28165967 + ORSgTEMT01602181 239 0.0037 (7/1876) 0 * Os_TE_710148 Os_TE_710141 Chr11 28163828 28163829 - RPO_OS 1983 0.0024 (4/1698) 0 * * Os_TE_710136 Chr11 28163469 28163468 + SEVERIN-2 1952 0.0015 (3/2021) 0 * * Os_TE_710119 Chr11 28161505 28161506 - RETRO1_LTR 8314 0.0016 (3/1931) 0 * Os_TE_710118 Os_TE_710118 Chr11 28161501 28161500 + RETRO1_LTR 8314 0.0015 (3/1938) 0 * Os_TE_710119 Os_TE_710112 Chr11 28161067 28161066 + SZ-9LTR 965 0.0346 (56/1617) 0 * * Os_TE_710106 Chr11 28160594 28160595 - ORSgTETNOOT02245 144 0.0102 (21/2056) 0 * Os_TE_710105 Os_TE_710105 Chr11 28160592 28160591 + ORSgTETNOOT01930 140 0.0099 (20/2025) 0 * Os_TE_710106 Os_TE_710064 Chr11 28140846 28140514 + ORSgTEMT00101194 329 0.8824 (2123/2406) 1 Intact * Os_TE_710059 Chr11 28140488 28138173 + SEVERIN-2 1952 0.0742 (119/1603) 1 Intact * Os_TE_709999 Chr11 28122543 28122542 - COPIA2-LTR_OS 6433 0.0004 (1/2338) 0 * * Os_TE_709994 Chr11 28121035 28121036 - ORSgTETN00200001 10994 0.0180 (46/2549) 0 * * Os_TE_709990 Chr11 28120554 28120553 - ORSgTETN00200001 10994 0.0063 (10/1580) 0 * * Os_TE_709987 Chr11 28119544 28119545 - RIRE2_LTR 11306 0.0032 (4/1255) 0 * Os_TE_709986 Os_TE_709986 Chr11 28119540 28119539 + RIREX_LTR 8828 0.0024 (3/1257) 0 * Os_TE_709987 Os_TE_709985 Chr11 28119087 28119088 + TELIA 141 0.0046 (2/431) 0 * Os_TE_709984 Os_TE_709984 Chr11 28119079 28119078 - TELIA 141 0.0019 (2/1079) 0 * Os_TE_709985 Os_TE_709977 Chr11 28116578 28116577 - RIRE2_LTR 11306 0.0007 (1/1517) 0 * * Os_TE_709911 Chr11 28093527 28093526 + GYPSY1-LTR_OS 8900 0.0004 (1/2486) 0 * * Os_TE_709909 Chr11 28093358 28093357 - OSLINE1-4 4779 0.1339 (345/2577) 0 * * Os_TE_709902 Chr11 28091469 28091468 - TRUNCATOR 2918 0.0007 (2/2670) 0 * * Os_TE_709901 Chr11 28091070 28090835 - ORSgTEMT01601834 234 0.3669 (970/2644) 1 Intact * Os_TE_709897 Chr11 28090809 28082995 - ORSiTERTOOT00300 9216 0.3917 (517/1320) 1 Intact * Os_TE_709876 Chr11 28059804 28059805 + EnSpm-15_OS 8871 0.0008 (1/1265) 0 * * Os_TE_709871 Chr11 28057858 28057681 - F118 179 0.8971 (549/612) 1 Intact Os_TE_709869 Os_TE_709869 Chr11 28057681 28057858 + F118 179 0.8986 (558/621) 1 Intact Os_TE_709871 Os_TE_709868 Chr11 28057226 28054050 + SZ-63_LTR 9602 0.8948 (553/618) 1 Solo_LTR Os_TE_709865 Os_TE_709865 Chr11 28054050 28057226 - SZ-63_LTR 9602 0.8919 (561/629) 1 Solo_LTR Os_TE_709868 Os_TE_709849 Chr11 28037266 28037265 + ENSPM4_OS 11610 0.0016 (1/642) 0 * * Os_TE_709819 Chr11 28012105 28012106 - RIRE2_LTR 11306 0.0050 (15/2985) 0 * Os_TE_709818 Os_TE_709818 Chr11 28012101 28012100 + RIRE2_LTR 11306 0.0050 (15/2988) 0 * Os_TE_709819 Os_TE_709816 Chr11 28009018 28009019 - SC-3_LTR 5748 0.0010 (3/2981) 0 * Os_TE_709815 Os_TE_709815 Chr11 28009014 28009013 + ORSiTERTOOT00296 5553 0.0010 (3/2928) 0 * Os_TE_709816 Os_TE_709811 Chr11 28007572 28007571 + SC-8_LTR 4951 0.0003 (1/2993) 0 * * Os_TE_709810 Chr11 28007223 28007222 - TNR11 811 0.0007 (2/2987) 0 * Os_TE_709809 Os_TE_709809 Chr11 28007219 28007220 + STOWAWAY51_OS 246 0.0007 (2/2696) 0 * Os_TE_709810 Os_TE_709808 Chr11 28006208 28006209 - COPIA2-LTR_OS 6433 0.0004 (1/2706) 0 * Os_TE_709807 Os_TE_709807 Chr11 28006204 28006203 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_709808 Os_TE_709801 Chr11 28002665 28002666 + ORSiTERTOOT00296 5553 0.0003 (1/2993) 0 * * Os_TE_709798 Chr11 27995855 27995856 + SZ-67LTR 1540 0.0027 (8/2970) 0 * Os_TE_709797 Os_TE_709797 Chr11 27995851 27995850 - SZ-67LTR 1540 0.0027 (8/2973) 0 * Os_TE_709798 Os_TE_709796 Chr11 27995740 27995741 - ORSiTERT00200154 9386 0.0487 (145/2980) 0 * Os_TE_709795 Os_TE_709795 Chr11 27995734 27995733 + TRUNCATOR 2918 0.0512 (153/2987) 0 * Os_TE_709796 Os_TE_709794 Chr11 27995574 27995575 + DS-RICE2N 613 0.0003 (1/2924) 0 * Os_TE_709793 Os_TE_709793 Chr11 27995567 27995566 - DS-RICE2N 613 0.0003 (1/2923) 0 * Os_TE_709794 Os_TE_709790 Chr11 27991831 27991830 - STOWAWAY13_OS 251 0.0017 (5/2980) 0 * * Os_TE_709789 Chr11 27991772 27991773 - SZ-67LTR 1540 0.0080 (14/1749) 0 * Os_TE_709788 Os_TE_709788 Chr11 27991768 27991767 + SZ-67LTR 1540 0.0047 (14/2966) 0 * Os_TE_709789 Os_TE_709787 Chr11 27991685 27991684 - RPO_OS 1983 0.0011 (2/1749) 0 * Os_TE_709786 Os_TE_709786 Chr11 27991684 27991685 + RPO_OS 1983 0.0007 (2/2960) 0 * Os_TE_709787 Os_TE_709785 Chr11 27991641 27991640 - TYPEM 227 0.0051 (15/2968) 0 * Os_TE_709784 Os_TE_709784 Chr11 27991640 27991641 - ORSgTEMT02400246 177 0.0054 (16/2964) 0 * Os_TE_709785 Os_TE_709783 Chr11 27991591 27991592 + RETRO1_LTR 8314 0.0007 (2/2900) 0 * * Os_TE_709782 Chr11 27990611 27990612 + NDNA1TNA_OS 334 0.0032 (6/1852) 0 * * Os_TE_709781 Chr11 27989897 27989898 - OSTE1 801 0.4292 (1240/2889) 0 * Os_TE_709780 Os_TE_709780 Chr11 27989893 27989892 + MuDR-N6_OS 836 0.0059 (10/1692) 0 * Os_TE_709781 Os_TE_709778 Chr11 27988974 27988973 + SEVERIN-2 1952 0.0005 (1/1841) 0 * * Os_TE_709777 Chr11 27985471 27985470 + DS-RICE4N 715 0.0005 (1/1855) 0 * * Os_TE_709776 Chr11 27985378 27985377 - RPO_OS 1983 0.0109 (20/1842) 0 * * Os_TE_709763 Chr11 27981556 27981557 + OLO24 345 0.0056 (3/534) 0 * Os_TE_709762 Os_TE_709762 Chr11 27981554 27981553 - OLO24 345 0.0061 (3/494) 0 * Os_TE_709763 Os_TE_709755 Chr11 27978049 27978050 + SPMLIKE 10989 0.0306 (46/1501) 0 * * Os_TE_709750 Chr11 27976598 27976597 - RETRO2_LTR 12874 0.0020 (3/1498) 0 * * Os_TE_709706 Chr11 27948113 27948112 - ORSgTEMT01600032 240 0.1784 (284/1592) 0 * Os_TE_709705 Os_TE_709705 Chr11 27948110 27948111 - ORSgTEMT01601987 232 0.1962 (270/1376) 0 * Os_TE_709706 Os_TE_709703 Chr11 27947412 27947413 - RIREX_LTR 8828 0.0018 (2/1122) 0 * * Os_TE_709700 Chr11 27946020 27946021 - RIREX_LTR 8828 0.0008 (1/1201) 0 * * Os_TE_709698 Chr11 27945567 27945568 - MPING 430 0.0151 (21/1395) 0 * Os_TE_709697 Os_TE_709697 Chr11 27945565 27945564 + MPING 430 0.0159 (22/1387) 0 * Os_TE_709698 Os_TE_709696 Chr11 27945465 27945466 + OSTE33 1012 0.0278 (30/1079) 0 * Os_TE_709695 Os_TE_709695 Chr11 27945456 27945455 + OSTE33 1012 0.0277 (36/1299) 0 * Os_TE_709696 Os_TE_709694 Chr11 27944411 27944412 - OSTE24 683 0.0162 (18/1114) 0 * * Os_TE_709693 Chr11 27944401 27944400 - MuDR3_OS 8604 0.0071 (10/1412) 0 * * Os_TE_709692 Chr11 27943723 27943724 - INDITTO 263 0.0044 (6/1379) 0 * Os_TE_709691 Os_TE_709691 Chr11 27943721 27943720 + INDITTO 263 0.0044 (6/1377) 0 * Os_TE_709692 Os_TE_709690 Chr11 27943615 27943616 - STOWAWAY17_OS 259 0.0227 (25/1099) 0 * Os_TE_709689 Os_TE_709689 Chr11 27943614 27943613 - ORSgTETNOOT00593 233 0.0174 (24/1383) 0 * Os_TE_709690 Os_TE_709688 Chr11 27942708 27942709 + INDITTO 263 0.0175 (19/1084) 0 * Os_TE_709687 Os_TE_709687 Chr11 27942706 27942705 - INDITTO 263 0.0184 (20/1087) 0 * Os_TE_709688 Os_TE_709682 Chr11 27940987 27940988 - ORSgTEMT02400179 221 0.0100 (11/1098) 0 * Os_TE_709681 Os_TE_709681 Chr11 27940986 27940985 - TYPEM 227 0.0087 (12/1378) 0 * Os_TE_709682 Os_TE_709680 Chr11 27940791 27940191 - OSTE9 421 0.8304 (1097/1321) 1 Intact * Os_TE_709676 Chr11 27938139 27938138 - ORSgTEMT01700299 212 0.2103 (270/1284) 0 * Os_TE_709675 Os_TE_709675 Chr11 27938135 27938136 - ORSgTEMT01701348 105 0.2118 (273/1289) 0 * Os_TE_709676 Os_TE_709651 Chr11 27929629 27929630 - RETROSAT2LTR 12796 0.0569 (76/1336) 0 * Os_TE_709650 Os_TE_709650 Chr11 27929627 27929626 + RETROSAT2LTR 12796 0.0546 (76/1393) 0 * Os_TE_709651 Os_TE_709648 Chr11 27929549 27929548 - INDITTO 263 0.0179 (25/1393) 0 * * Os_TE_709646 Chr11 27929224 27929223 + AMYLTP 383 0.0701 (97/1383) 0 * * Os_TE_709626 Chr11 27919908 27919909 + CPSC4A_LTR 5182 0.0089 (10/1124) 0 * Os_TE_709625 Os_TE_709625 Chr11 27919901 27919900 - CPSC4A_LTR 5182 0.0023 (3/1321) 0 * Os_TE_709626 Os_TE_709622 Chr11 27919366 27919367 - ORSgTEMT01700029 143 0.0010 (2/2007) -1 * * Os_TE_709603 Chr11 27911700 27911701 + TRUNCATOR 2918 0.0018 (2/1121) 0 * * Os_TE_709598 Chr11 27907374 27901037 + RIRE5-LTR_OS 6427 0.7264 (1025/1411) 1 Intact * Os_TE_709589 Chr11 27898401 27898400 - SZ-67LTR 1540 0.0251 (58/2309) 0 * * Os_TE_709559 Chr11 27892088 27892089 + RETROSAT4_LTR 13504 0.0022 (3/1355) 0 * * Os_TE_709556 Chr11 27889300 27889301 - SC-3_LTR 5748 0.0014 (2/1410) 0 * Os_TE_709555 Os_TE_709555 Chr11 27889296 27889295 + ORSiTERTOOT00296 5553 0.0014 (2/1384) 0 * Os_TE_709556 Os_TE_709538 Chr11 27880237 27880238 + DS-RICE4N 715 0.0142 (20/1412) 0 * Os_TE_709537 Os_TE_709537 Chr11 27880230 27880229 - DS-RICE2N 613 0.0127 (22/1729) 0 * Os_TE_709538 Os_TE_709536 Chr11 27879428 27879429 - MDR2 6967 0.0048 (9/1864) 0 * Os_TE_709535 Os_TE_709535 Chr11 27879420 27879419 + MDR2 6967 0.0050 (9/1806) 0 * Os_TE_709536 Os_TE_709517 Chr11 27873498 27873499 - MERMITE18B 1306 0.1605 (249/1551) 0 * * Os_TE_709515 Chr11 27873439 27871831 - MERMITE18B 1306 0.8453 (1306/1545) -1 Intact * Os_TE_709476 Chr11 27862663 27862664 + SZ-62LTR 3649 0.0264 (37/1400) 0 * Os_TE_709475 Os_TE_709475 Chr11 27862659 27862658 - SZ-62LTR 3649 0.0278 (39/1401) 0 * Os_TE_709476 Os_TE_709460 Chr11 27856972 27856973 - RIRE2_LTR 11306 0.0097 (20/2072) 0 * * Os_TE_709457 Chr11 27856405 27852582 - SZ-35LTR 3853 0.7360 (1051/1428) 1 Intact * Os_TE_709452 Chr11 27852194 27852195 - NDNA1TNA_OS 334 0.0050 (12/2396) 0 * * Os_TE_709441 Chr11 27850271 27859087 - ORSiTERTOOT00437 4558 0.8459 (1394/1648) 1 Intact * Os_TE_709436 Chr11 27848242 27848243 + NDNA1TNA_OS 334 0.0079 (12/1510) 0 * * Os_TE_709434 Chr11 27847383 27847384 - RIREX_LTR 8828 0.0018 (3/1634) 0 * Os_TE_709433 Os_TE_709433 Chr11 27847379 27847378 + RIREX_LTR 8828 0.0018 (3/1631) 0 * Os_TE_709434 Os_TE_709432 Chr11 27846895 27846894 - RIREX_LTR 8828 0.0006 (1/1619) 0 * * Os_TE_709422 Chr11 27841923 27841924 - AMYLTP 383 0.0004 (1/2787) 0 * * Os_TE_709418 Chr11 27840881 27840882 + RETROSAT4_LTR 13504 0.0024 (7/2905) 0 * * Os_TE_709415 Chr11 27839990 27839989 - ORSgTEMT02000040 196 0.0030 (9/2965) 0 * * Os_TE_709414 Chr11 27839802 27839464 + ORSgTEMT00100531 325 0.1565 (440/2812) 1 Intact * Os_TE_709411 Chr11 27839164 27839022 - ORSgTEMT00502237 143 0.8676 (2392/2757) 1 Intact * Os_TE_709407 Chr11 27838997 27838998 + RETROSAT4_LTR 13504 0.0027 (8/2961) 0 * * Os_TE_709395 Chr11 27837540 27837155 - TYPEU1 380 0.6893 (2043/2964) 1 Intact Os_TE_709394 Os_TE_709394 Chr11 27837151 27837540 + TYPEU4 402 0.6552 (1807/2758) 1 Intact Os_TE_709395 Os_TE_709391 Chr11 27836642 27836643 - RETROSAT4_LTR 13504 0.0838 (221/2637) 0 * * Os_TE_709389 Chr11 27836369 27836370 - Cassandra_OS-LTR 764 0.0108 (11/1017) -1 * * Os_TE_709387 Chr11 27836347 27836348 - RETROSAT4_LTR 13504 0.0174 (34/1953) 0 * Os_TE_709386 Os_TE_709386 Chr11 27836337 27836336 + RETROSAT4_LTR 13504 0.0011 (2/1870) 0 * Os_TE_709387 Os_TE_709385 Chr11 27836304 27836305 + SZ-48LTR 3632 0.0201 (49/2434) 0 * * Os_TE_709377 Chr11 27834745 27834746 + TREP215 239 0.0034 (10/2951) 0 * * Os_TE_709376 Chr11 27834722 27834723 - ENSPM4_OS 11610 0.0010 (3/2960) 0 * * Os_TE_709359 Chr11 27830018 27830017 - ORSgTETN00200001 10994 0.0119 (35/2948) 0 * * Os_TE_709342 Chr11 27827881 27827880 + MDR2 6967 0.0003 (1/2960) 0 * Os_TE_709341 Os_TE_709341 Chr11 27827835 27827836 - MDR2 6967 0.0003 (1/2940) 0 * Os_TE_709342 Os_TE_709340 Chr11 27827779 27827780 + ENSPM6_OS 9815 0.0017 (5/2916) 0 * Os_TE_709339 Os_TE_709339 Chr11 27827777 27827776 - ENSPM6_OS 9815 0.0034 (10/2938) 0 * Os_TE_709340 Os_TE_709336 Chr11 27827291 27827292 + ORSgTETNOOT01313 249 0.0823 (235/2857) 0 * Os_TE_709335 Os_TE_709335 Chr11 27827282 27827281 + ORSgTETNOOT01686 252 0.0846 (241/2850) 0 * Os_TE_709336 Os_TE_709333 Chr11 27827098 27827097 + ORSgTEMT00501356 145 0.0014 (4/2880) 0 * * Os_TE_709329 Chr11 27826679 27826678 - RETROSAT5_LTR 13878 0.7227 (842/1165) -1 * * Os_TE_709320 Chr11 27825477 27825476 - RETROSAT4_LTR 13504 0.0831 (246/2959) 0 * * Os_TE_709316 Chr11 27824360 27824361 + ORSiTERTOOT00028 8600 0.0303 (90/2967) 0 * Os_TE_709315 Os_TE_709315 Chr11 27824356 27824355 - TRUNCATOR2_LTR 2904 0.0323 (96/2972) 0 * Os_TE_709316 Os_TE_709305 Chr11 27820116 27820115 + SETARIA 1402 0.0003 (1/2961) 0 * * Os_TE_709301 Chr11 27819671 27819672 - SZ-35LTR 3853 0.0546 (158/2894) 0 * * Os_TE_709281 Chr11 27816264 27816265 - SZ-35LTR 3853 0.0077 (8/1042) -1 * * Os_TE_709273 Chr11 27814845 27815169 - Cassandra_OS-LTR 764 0.8908 (2520/2829) 1 Solo_LTR * Os_TE_709270 Chr11 27814110 27814111 + SEVERIN-2 1952 0.0844 (251/2975) 0 * * Os_TE_709267 Chr11 27813069 27813070 - RIREX_LTR 8828 0.0034 (10/2959) 0 * Os_TE_709266 Os_TE_709266 Chr11 27813065 27813064 + RIREX_LTR 8828 0.0041 (12/2958) 0 * Os_TE_709267 Os_TE_709262 Chr11 27811648 27811649 + ORSgTEMT00502025 149 0.0008 (1/1280) 0 * * Os_TE_709260 Chr11 27811448 27811202 + ORSgTEMT01400024 215 0.5052 (1109/2195) -1 Intact Os_TE_709257 Os_TE_709257 Chr11 27811199 27811407 - ORSgTEMT01400015 213 0.4254 (1152/2708) 1 Intact Os_TE_709260 Os_TE_709246 Chr11 27808267 27808268 + RETRO2_LTR 12874 0.0917 (252/2749) 0 * Os_TE_709245 Os_TE_709245 Chr11 27808263 27808262 - RETRO1_LTR 8314 0.1049 (292/2784) 0 * Os_TE_709246 Os_TE_709240 Chr11 27806436 27806437 + ENSPM4_OS 11610 0.0218 (49/2250) 0 * * Os_TE_709239 Chr11 27806405 27806406 + NDNA1TNA_OS 334 0.0004 (1/2785) 0 * Os_TE_709238 Os_TE_709238 Chr11 27806403 27806402 - NDNA1TNA_OS 334 0.0005 (1/1909) 0 * Os_TE_709239 Os_TE_709231 Chr11 27804855 27804856 + SZ-55_LTR 10318 0.0004 (1/2839) 0 * Os_TE_709230 Os_TE_709230 Chr11 27804851 27804850 - SZ-55_LTR 10318 0.0004 (1/2732) 0 * Os_TE_709231 Os_TE_709224 Chr11 27804278 27804279 + SPMLIKE 10989 0.1280 (364/2844) 0 * * Os_TE_709222 Chr11 27803981 27803982 + ENSPM5_OS 9581 0.0049 (14/2836) 0 * Os_TE_709221 Os_TE_709221 Chr11 27803979 27803978 - ENSPM6_OS 9815 0.0062 (14/2262) 0 * Os_TE_709222 Os_TE_709220 Chr11 27803949 27803950 + SPMLIKE 10989 0.0169 (48/2841) 0 * Os_TE_709219 Os_TE_709219 Chr11 27803947 27803946 - ORSgTETN00200001 10994 0.0159 (45/2831) 0 * Os_TE_709220 Os_TE_709217 Chr11 27803697 27803698 + RIREX_LTR 8828 0.0008 (2/2377) 0 * * Os_TE_709208 Chr11 27801144 27801143 + TRUNCATOR 2918 0.0838 (224/2673) 0 * * Os_TE_709203 Chr11 27800889 27800888 - SZ-67LTR 1540 0.1288 (271/2104) 0 * * Os_TE_709202 Chr11 27800605 27800606 - ORSgTETN00200001 10994 0.0028 (8/2844) 0 * Os_TE_709201 Os_TE_709201 Chr11 27800603 27800602 + SPMLIKE 10989 0.0028 (8/2837) 0 * Os_TE_709202 Os_TE_709199 Chr11 27799372 27799371 - COPI2_LTR 4733 0.0093 (27/2912) 0 * * Os_TE_709185 Chr11 27793035 27793036 + RIREX_LTR 8828 0.0010 (3/2987) 0 * * Os_TE_709181 Chr11 27791195 27791196 - OSR3_LTR 5201 0.0007 (2/2974) 0 * * Os_TE_709173 Chr11 27786220 27786221 - MUDRN1_OS 764 0.0099 (21/2114) 0 * Os_TE_709172 Os_TE_709172 Chr11 27786212 27786211 + MUDRN2_OS 756 0.0085 (18/2114) 0 * Os_TE_709173 Os_TE_709170 Chr11 27784817 27779423 + ORSiTERTOOT00332 5395 0.2982 (640/2146) 1 Intact Os_TE_709169 Os_TE_709169 Chr11 27779423 27784817 - ORSiTERTOOT00332 5395 0.1913 (364/1903) 1 Intact Os_TE_709170 Os_TE_709168 Chr11 27779149 27779150 + NDNA1TNA_OS 334 0.0016 (3/1881) 0 * Os_TE_709167 Os_TE_709167 Chr11 27779147 27779146 - NDNA1TNA_OS 334 0.0016 (3/1882) 0 * Os_TE_709168 Os_TE_709153 Chr11 27774553 27774554 + COPIA2-LTR_OS 6433 0.0114 (21/1839) 0 * * Os_TE_709131 Chr11 27766782 27766783 - TRUNCATOR2_LTR 2904 0.0007 (1/1492) 0 * * Os_TE_709125 Chr11 27765621 27765622 - RIRE3A_LTR 10580 0.3225 (605/1876) 0 * Os_TE_709124 Os_TE_709124 Chr11 27765617 27765616 + ORSiTERTOOT00027 10853 0.2720 (479/1761) 0 * Os_TE_709125 Os_TE_709123 Chr11 27765372 27765373 - TYPEM 227 0.0897 (169/1885) 0 * Os_TE_709122 Os_TE_709122 Chr11 27765371 27765370 - ORSgTEMT02400179 221 0.0880 (166/1886) 0 * Os_TE_709123 Os_TE_709121 Chr11 27764696 27764697 + MDR2 6967 0.1180 (220/1865) 0 * Os_TE_709120 Os_TE_709120 Chr11 27764688 27764687 - MDR2 6967 0.1233 (230/1866) 0 * Os_TE_709121 Os_TE_709119 Chr11 27764493 27764494 - MuDR3_OS 8604 0.0780 (145/1860) 0 * Os_TE_709118 Os_TE_709118 Chr11 27764484 27764483 - MuDR3_OS 8604 0.0784 (146/1863) 0 * Os_TE_709119 Os_TE_709102 Chr11 27740878 27740879 + OSTONOR1_LTR 6440 0.0267 (45/1684) 0 * * Os_TE_709093 Chr11 27729383 27729384 + DS-RICE2N 613 0.0104 (20/1924) 0 * * Os_TE_709085 Chr11 27727454 27727455 + ORSgTEMT00500512 153 0.2306 (448/1943) -1 * * Os_TE_709057 Chr11 27720123 27720122 + TRUNCATOR2_LTR 2904 0.0164 (20/1219) 0 * * Os_TE_709023 Chr11 27710038 27710039 - ORSgTEMT00100854 331 0.0058 (12/2060) 0 * * Os_TE_709016 Chr11 27708398 27708399 - SZ-40LTR 2465 0.0010 (2/1909) 0 * * Os_TE_709002 Chr11 27703026 27703027 + ENSPM5_OS 9581 0.0802 (198/2468) 0 * Os_TE_709001 Os_TE_709001 Chr11 27703024 27703023 - ENSPM6_OS 9815 0.0909 (227/2496) 0 * Os_TE_709002 Os_TE_708999 Chr11 27702847 27702848 - ORSgTETN00200001 10994 0.0100 (22/2207) 0 * Os_TE_708998 Os_TE_708998 Chr11 27702845 27702844 + SPMLIKE 10989 0.0111 (25/2245) 0 * Os_TE_708999 Os_TE_708997 Chr11 27702806 27702805 - RPO_OS 1983 0.1280 (278/2172) 0 * * Os_TE_708991 Chr11 27702241 27702242 + RIRE2_LTR 11306 0.0004 (1/2558) 0 * Os_TE_708990 Os_TE_708990 Chr11 27702237 27702236 - RIRE2_LTR 11306 0.0004 (1/2556) 0 * Os_TE_708991 Os_TE_708988 Chr11 27701802 27701801 + OSTONOR1_LTR 6440 0.0051 (13/2562) 0 * * Os_TE_708984 Chr11 27701017 27701018 + SEVERIN-2 1952 0.0069 (18/2617) 0 * * Os_TE_708978 Chr11 27700015 27700014 - ENSPM4_OS 11610 0.0365 (94/2572) 0 * * Os_TE_708969 Chr11 27696983 27696984 - RETROSAT2LTR 12796 0.0090 (24/2653) 0 * * Os_TE_708968 Chr11 27696713 27696714 - RETROSAT4_LTR 13504 0.0363 (95/2620) 0 * Os_TE_708967 Os_TE_708967 Chr11 27696709 27696708 + RETROSAT4_LTR 13504 0.0345 (90/2611) 0 * Os_TE_708968 Os_TE_708956 Chr11 27695143 27695144 - MERMITE18B 1306 0.0008 (2/2631) 0 * * Os_TE_708953 Chr11 27693209 27693210 + SC-8_LTR 4951 0.0004 (1/2623) 0 * * Os_TE_708939 Chr11 27681812 27681813 + MuDR2_OS 6770 0.1177 (249/2116) 0 * Os_TE_708938 Os_TE_708938 Chr11 27681803 27681802 - MuDR2_OS 6770 0.0875 (177/2022) 0 * Os_TE_708939 Os_TE_708930 Chr11 27680092 27680091 + ORSgTEMT00901844 250 0.0017 (5/2998) 0 * Os_TE_708929 Os_TE_708929 Chr11 27680088 27680089 - ORSgTEMT00900099 250 0.0013 (4/2994) 0 * Os_TE_708930 Os_TE_708928 Chr11 27679618 27679619 + NDNA1TNA_OS 334 0.0891 (261/2928) 0 * Os_TE_708927 Os_TE_708927 Chr11 27679616 27679615 - NDNA1TNA_OS 334 0.0877 (257/2930) 0 * Os_TE_708928 Os_TE_708925 Chr11 27678601 27678602 - SZ-35LTR 3853 0.0138 (41/2973) 0 * Os_TE_708924 Os_TE_708924 Chr11 27678597 27678596 + RETROSAT4_LTR 13504 0.0131 (39/2977) 0 * Os_TE_708925 Os_TE_708923 Chr11 27678318 27678317 - ORSgTEMT00100799 337 0.4844 (1413/2917) 0 * Os_TE_708922 Os_TE_708922 Chr11 27678312 27678313 + ORSgTEMT00101341 314 0.2242 (319/1423) 0 * Os_TE_708923 Os_TE_708921 Chr11 27678300 27678301 + RETRO2_LTR 12874 0.4013 (1202/2995) 0 * * Os_TE_708919 Chr11 27678170 27678171 + SPMLIKE 10989 0.0127 (38/2995) 0 * Os_TE_708918 Os_TE_708918 Chr11 27678168 27678167 - ORSgTETN00200001 10994 0.0100 (30/2990) 0 * Os_TE_708919 Os_TE_708909 Chr11 27674677 27674676 + ORSgTETN00200005 1121 0.2355 (688/2921) 0 * Os_TE_708908 Os_TE_708908 Chr11 27674676 27674677 + CACTA-H 1152 0.5478 (745/1360) 0 * Os_TE_708909 Os_TE_708907 Chr11 27673490 27673491 + ORSgTEMT00100531 325 0.0363 (106/2917) 0 * * Os_TE_708905 Chr11 27671483 27671482 + OLO24 345 0.0028 (8/2874) 0 * Os_TE_708904 Os_TE_708904 Chr11 27671481 27671482 - OLO24 345 0.0023 (7/2986) 0 * Os_TE_708905 Os_TE_708902 Chr11 27670453 27670454 + TNR1 237 0.7286 (2153/2955) 0 * Os_TE_708901 Os_TE_708901 Chr11 27670451 27670450 - ORSgTEMT01601432 239 0.4710 (746/1584) 0 * Os_TE_708902 Os_TE_708899 Chr11 27669494 27669495 - RIREX_LTR 8828 0.1263 (378/2992) 0 * Os_TE_708898 Os_TE_708898 Chr11 27669490 27669489 + RIREX_LTR 8828 0.1255 (376/2995) 0 * Os_TE_708899 Os_TE_708896 Chr11 27668976 27668977 - RETROSAT3_LTR 11537 0.0077 (23/2997) 0 * * Os_TE_708895 Chr11 27668877 27668878 + RETRO2_LTR 12874 0.0007 (2/2992) 0 * Os_TE_708894 Os_TE_708894 Chr11 27668873 27668872 - RETRO2_LTR 12874 0.0007 (2/2993) 0 * Os_TE_708895 Os_TE_708888 Chr11 27668328 27668329 - ORSgTEMT01601834 234 0.8694 (2057/2366) 0 * * Os_TE_708863 Chr11 27656266 27656265 + TRUNCATOR 2918 0.0040 (12/2976) 0 * Os_TE_708862 Os_TE_708862 Chr11 27656265 27656266 - TRUNCATOR 2918 0.0034 (10/2978) 0 * Os_TE_708863 Os_TE_708853 Chr11 27650820 27650819 - MDR2 6967 0.0017 (5/2982) 0 * Os_TE_708852 Os_TE_708852 Chr11 27650817 27650818 - MDR2 6967 0.0013 (4/2976) 0 * Os_TE_708853 Os_TE_708848 Chr11 27648622 27648621 - SEVERIN-2 1952 0.0003 (1/2949) 0 * * Os_TE_708839 Chr11 27647709 27647710 - MuDR4_OS 7610 0.0131 (39/2983) 0 * Os_TE_708838 Os_TE_708838 Chr11 27647703 27647702 - MuDR4_OS 7610 0.0131 (39/2979) 0 * Os_TE_708839 Os_TE_708826 Chr11 27644509 27644508 - ORSgTEMT02000040 196 0.1108 (327/2952) 0 * * Os_TE_708825 Chr11 27644148 27644149 + TWIFB1 3737 0.0003 (1/2968) 0 * * Os_TE_708824 Chr11 27643165 27643166 - TRUNCATOR2_LTR 2904 0.0602 (170/2823) 0 * * Os_TE_708822 Chr11 27643096 27627204 + TRUNCATOR 2918 0.0904 (256/2832) 1 Intact Os_TE_708813 Os_TE_708813 Chr11 27627205 27643096 - ORSgTERT00200863 2965 0.0895 (253/2827) 1 Intact Os_TE_708822 Os_TE_708811 Chr11 27626995 27626996 + RIREX_LTR 8828 0.0011 (3/2819) 0 * Os_TE_708810 Os_TE_708810 Chr11 27626991 27626990 - RIREX_LTR 8828 0.0011 (3/2815) 0 * Os_TE_708811 Os_TE_708809 Chr11 27626522 27626521 + SZ-54_LTR 5203 0.0307 (91/2969) 0 * * Os_TE_708806 Chr11 27626046 27611142 - ORSgTETN00200001 10994 0.0698 (197/2823) 1 Intact * Os_TE_708799 Chr11 27610992 27610993 + RETROSAT4_LTR 13504 0.0528 (137/2595) 0 * Os_TE_708798 Os_TE_708798 Chr11 27610988 27610987 - SZ-35LTR 3853 0.0525 (152/2895) 0 * Os_TE_708799 Os_TE_708791 Chr11 27610146 27610147 - SZ-48LTR 3632 0.0342 (96/2806) 0 * Os_TE_708790 Os_TE_708790 Chr11 27610142 27610141 + SZ-48LTR 3632 0.0333 (97/2909) 0 * Os_TE_708791 Os_TE_708786 Chr11 27609325 27609326 + ORSgTEMT00600376 329 0.4985 (1344/2696) 0 * * Os_TE_708781 Chr11 27608949 27608948 + MERMITEB 1610 0.1093 (324/2964) 0 * * Os_TE_708778 Chr11 27608894 27608893 + TWIFB1 3737 0.0004 (1/2650) 0 * * Os_TE_708772 Chr11 27606210 27606211 - ORSgTEMT00502257 142 0.1098 (327/2978) 0 * Os_TE_708771 Os_TE_708771 Chr11 27606208 27606207 + ORSgTEMT00500201 140 0.1104 (329/2979) 0 * Os_TE_708772 Os_TE_708770 Chr11 27606170 27606171 - ORSiTERTOOT00402 2660 0.0017 (5/2886) 0 * Os_TE_708769 Os_TE_708769 Chr11 27606166 27606165 + ORSiTERTOOT00402 2660 0.0017 (5/2977) 0 * Os_TE_708770 Os_TE_708767 Chr11 27605628 27605629 - RIREX_LTR 8828 0.1086 (325/2993) 0 * Os_TE_708766 Os_TE_708766 Chr11 27605624 27605623 + RIREX_LTR 8828 0.1085 (325/2995) 0 * Os_TE_708767 Os_TE_708765 Chr11 27605184 27605185 - RIRE2_LTR 11306 0.0310 (93/2996) 0 * Os_TE_708764 Os_TE_708764 Chr11 27605180 27605179 + RIRE2_LTR 11306 0.0321 (94/2930) 0 * Os_TE_708765 Os_TE_708763 Chr11 27605020 27605021 - ORSgTERT00201216 11284 0.0007 (2/2993) 0 * Os_TE_708762 Os_TE_708762 Chr11 27605016 27605015 - RIRE2_LTR 11306 0.0007 (2/2996) 0 * Os_TE_708763 Os_TE_708758 Chr11 27603225 27598009 - SC-4_LTR 5218 0.0307 (92/2996) 0.86 Intact Os_TE_708756 Os_TE_708756 Chr11 27598009 27603225 + SC-4_LTR 5218 0.0304 (91/2994) 0.89 Intact Os_TE_708758 Os_TE_708753 Chr11 27594415 27594414 + ORSgTETNOOT00032 218 0.0104 (31/2976) 0 * * Os_TE_708751 Chr11 27591959 27591958 - SC-3_LTR 5748 0.0010 (3/2996) 0 * * Os_TE_708748 Chr11 27590693 27590692 + MERMITEB 1610 0.0008 (2/2521) 0 * * Os_TE_708746 Chr11 27590350 27590349 + RETRO2_LTR 12874 0.1370 (326/2379) 0 * * Os_TE_708740 Chr11 27588372 27588373 - COPI2_LTR 4733 0.0403 (101/2504) 0 * Os_TE_708739 Os_TE_708739 Chr11 27588368 27588367 + COPI2_LTR 4733 0.0426 (107/2510) 0 * Os_TE_708740 Os_TE_708738 Chr11 27588166 27588167 - RETROSAT5_LTR 13878 0.0008 (2/2520) 0 * Os_TE_708737 Os_TE_708737 Chr11 27588162 27588161 + ORSiTERT00200145 12238 0.0004 (1/2514) 0 * Os_TE_708738 Os_TE_708736 Chr11 27587883 27587882 - OSTE20 496 0.0068 (17/2510) -1 * * Os_TE_708730 Chr11 27585214 27585213 + SPMLIKE 10989 0.0012 (3/2529) 0 * * Os_TE_708729 Chr11 27584094 27584095 + RETROSAT4_LTR 13504 0.0024 (6/2544) 0 * Os_TE_708728 Os_TE_708728 Chr11 27584090 27584089 - RETROSAT4_LTR 13504 0.0020 (5/2542) 0 * Os_TE_708729 Os_TE_708725 Chr11 27583457 27583458 - ORSiTERT00100062 5674 0.0323 (82/2539) 0 * Os_TE_708724 Os_TE_708724 Chr11 27583453 27583452 + OSTONOR1_LTR 6440 0.0319 (81/2538) 0 * Os_TE_708725 Os_TE_708721 Chr11 27582215 27582216 + SZ-9LTR 965 0.0428 (108/2522) 0 * Os_TE_708720 Os_TE_708720 Chr11 27582211 27582210 - SZ-9LTR 965 0.0428 (108/2521) 0 * Os_TE_708721 Os_TE_708718 Chr11 27581789 27581790 + RETROSAT4_LTR 13504 0.1265 (317/2505) 0 * Os_TE_708717 Os_TE_708717 Chr11 27581785 27581784 - SZ-35LTR 3853 0.1314 (330/2511) 0 * Os_TE_708718 Os_TE_708716 Chr11 27581501 27581502 - RIRE2_LTR 11306 0.0308 (78/2533) 0 * Os_TE_708715 Os_TE_708715 Chr11 27581497 27581496 + RIRE2_LTR 11306 0.0303 (76/2511) 0 * Os_TE_708716 Os_TE_708714 Chr11 27581426 27581427 + ORSgTEMT04600032 273 0.0082 (21/2546) 0 * * Os_TE_708713 Chr11 27581384 27581385 + OSTE33 1012 0.0063 (16/2527) 0 * Os_TE_708712 Os_TE_708712 Chr11 27581375 27581374 - OSTE33 1012 0.0067 (17/2528) 0 * Os_TE_708713 Os_TE_708707 Chr11 27580661 27580662 - SZ-35LTR 3853 0.0020 (5/2442) 0 * Os_TE_708706 Os_TE_708706 Chr11 27580657 27580656 + RETROSAT4_LTR 13504 0.0020 (5/2538) 0 * Os_TE_708707 Os_TE_708702 Chr11 27579557 27579558 + SPMLIKE 10989 0.0035 (10/2875) 0 * Os_TE_708701 Os_TE_708701 Chr11 27579555 27579554 - ORSgTETN00200001 10994 0.0034 (10/2932) 0 * Os_TE_708702 Os_TE_708700 Chr11 27578432 27578433 + ORSgTEMT01602181 239 0.0011 (2/1813) 0 * * Os_TE_708699 Chr11 27578418 27578419 - RIREX_LTR 8828 0.0003 (1/2961) 0 * * Os_TE_708697 Chr11 27578330 27578329 + DS-RICE3N 525 0.0044 (13/2975) 0 * * Os_TE_708696 Chr11 27578231 27578230 - ORSgTEMT01601432 239 0.0013 (4/2982) 0 * * Os_TE_708695 Chr11 27577929 27577928 + TREP215 239 0.4504 (1199/2662) 0 * * Os_TE_708694 Chr11 27577926 27577927 - ORSgTEMT01601564 233 0.4006 (1175/2933) 0 * Os_TE_708693 Os_TE_708693 Chr11 27577921 27577920 + TYPEU4 402 0.0057 (10/1759) 0 * Os_TE_708694 Os_TE_708691 Chr11 27577825 27577826 + RETROSAT4_LTR 13504 0.0015 (4/2654) 0 * Os_TE_708690 Os_TE_708690 Chr11 27577821 27577820 - RETROSAT4_LTR 13504 0.0014 (4/2772) 0 * Os_TE_708691 Os_TE_708689 Chr11 27577803 27577804 + SZ-48LTR 3632 0.1111 (323/2907) 0 * Os_TE_708688 Os_TE_708688 Chr11 27577799 27577798 - SZ-48LTR 3632 0.1137 (329/2893) 0 * Os_TE_708689 Os_TE_708680 Chr11 27575001 27577464 - GYPSI_LTR 18003 0.3317 (940/2834) 1 Solo_LTR * Os_TE_708678 Chr11 27574370 27574371 + ENSPM5_OS 9581 0.0110 (29/2629) 0 * * Os_TE_708674 Chr11 27572838 27572839 - RETRO2_LTR 12874 0.1173 (337/2873) 0 * * Os_TE_708671 Chr11 27572671 27572670 + COPIA2-LTR_OS 6433 0.0003 (1/2959) 0 * * Os_TE_708669 Chr11 27572479 27572480 + RETROSAT4_LTR 13504 0.0024 (7/2897) 0 * * Os_TE_708666 Chr11 27570699 27570698 + ORSgTEMT01602188 240 0.5596 (1595/2850) 0 * Os_TE_708665 Os_TE_708665 Chr11 27570696 27570697 - ORSgTEMT01601770 238 0.5741 (1616/2815) 0 * Os_TE_708666 Os_TE_708663 Chr11 27570287 27569945 - ORSgTEMT00101304 350 0.4277 (1227/2869) 1 Intact * Os_TE_708656 Chr11 27568290 27568289 + MERMITE 1401 0.1092 (129/1181) 0 * * Os_TE_708654 Chr11 27566383 27566384 - COPIA2-LTR_OS 6433 0.0068 (10/1470) 0 * Os_TE_708653 Os_TE_708653 Chr11 27566379 27566378 + COPIA2-LTR_OS 6433 0.0068 (10/1470) 0 * Os_TE_708654 Os_TE_708652 Chr11 27566333 27566334 + OSR3_LTR 5201 0.0065 (9/1388) 0 * * Os_TE_708649 Chr11 27565395 27565396 + COPI2_LTR 4733 0.0014 (2/1458) 0 * * Os_TE_708641 Chr11 27562310 27562311 - RETRO2A_LTR 12895 0.0183 (18/985) 0 * Os_TE_708640 Os_TE_708640 Chr11 27562306 27562305 + RETRO2A_LTR 12895 0.0172 (17/990) 0 * Os_TE_708641 Os_TE_708634 Chr11 27560349 27556592 + RETROSAT4_LTR 13504 0.8671 (959/1106) 1 Solo_LTR * Os_TE_708627 Chr11 27556401 27556402 + SZ-67LTR 1540 0.0036 (4/1125) 0 * * Os_TE_708623 Chr11 27553639 27553638 - CACTA-Q 2268 0.0709 (80/1129) 0 * * Os_TE_708617 Chr11 27552429 27552430 - ORSgTEMT01400014 209 0.0241 (13/540) 0 * * Os_TE_708608 Chr11 27550390 27550391 - RETRO2_LTR 12874 0.0199 (11/554) 0 * * Os_TE_708603 Chr11 27547691 27547690 - DS-RICE2N 613 0.0092 (5/546) 0 * * Os_TE_708602 Chr11 27547336 27547337 + DS-RICE4N 715 0.0095 (5/529) 0 * * Os_TE_708596 Chr11 27546906 27547143 - ORSgTEMT01600747 238 0.2671 (528/1977) 1 Intact * Os_TE_708595 Chr11 27546793 27546792 + ORSgTEMT01601934 207 0.7406 (1502/2028) 0 * * Os_TE_708592 Chr11 27546555 27546556 + RIRE2_LTR 11306 0.0005 (1/2125) 0 * Os_TE_708591 Os_TE_708591 Chr11 27546551 27546550 - RIRE2_LTR 11306 0.0005 (1/2137) 0 * Os_TE_708592 Os_TE_708589 Chr11 27546055 27546056 + RIRE2_LTR 11306 0.0111 (24/2154) 0 * * Os_TE_708587 Chr11 27545996 27545997 - SZ-55_LTR 10318 0.0029 (7/2420) 0 * Os_TE_708586 Os_TE_708586 Chr11 27545992 27545991 + SZ-55_LTR 10318 0.0032 (7/2181) 0 * Os_TE_708587 Os_TE_708557 Chr11 27529037 27529038 - STOWAWAY13_OS 251 0.0240 (8/334) 0 * * Os_TE_708519 Chr11 27505364 27505365 - ORSgTEMT00501447 126 0.2210 (411/1860) 0 * Os_TE_708518 Os_TE_708518 Chr11 27505362 27505361 + ORSgTETNOOT00544 147 0.5302 (412/777) 0 * Os_TE_708519 Os_TE_708506 Chr11 27498124 27498123 + MERMITE18B 1306 0.1392 (408/2932) 0 * * Os_TE_708503 Chr11 27493900 27493899 - ORSgTETNOOT00118 134 0.0080 (23/2862) 0 * * Os_TE_708487 Chr11 27488918 27488917 + ENSPM4_OS 11610 0.0180 (46/2556) 0 * * Os_TE_708480 Chr11 27485990 27485991 + ORSiTERTOOT00226 792 0.0003 (1/2981) 0 * Os_TE_708479 Os_TE_708479 Chr11 27485986 27485985 - SZ-22_LTR 4403 0.0003 (1/2985) 0 * Os_TE_708480 Os_TE_708478 Chr11 27485517 27485518 + SPMLIKE 10989 0.0364 (105/2885) 0 * Os_TE_708477 Os_TE_708477 Chr11 27485515 27485514 - ORSgTETN00200001 10994 0.0286 (83/2903) 0 * Os_TE_708478 Os_TE_708476 Chr11 27485172 27485173 - INDITTO 263 0.0188 (53/2820) 0 * Os_TE_708475 Os_TE_708475 Chr11 27485170 27485169 + INDITTO 263 0.0183 (53/2901) 0 * Os_TE_708476 Os_TE_708471 Chr11 27484428 27484429 + RETRO2_LTR 12874 0.2057 (594/2887) 0 * Os_TE_708470 Os_TE_708470 Chr11 27484424 27484423 - RETRO2_LTR 12874 0.2190 (633/2891) 0 * Os_TE_708471 Os_TE_708467 Chr11 27483469 27483468 - SEVERIN-2 1952 0.0339 (101/2977) 0 * * Os_TE_708466 Chr11 27483392 27483391 - SEVERIN-2 1952 0.2970 (725/2441) 0 * * Os_TE_708464 Chr11 27482331 27482332 + RIRE2_LTR 11306 0.0010 (3/2979) 0 * Os_TE_708463 Os_TE_708463 Chr11 27482327 27482326 - RIRE2_LTR 11306 0.0010 (3/2977) 0 * Os_TE_708464 Os_TE_708462 Chr11 27482046 27482045 + RIRE2_LTR 11306 0.0003 (1/2994) 0 * * Os_TE_708461 Chr11 27481684 27481685 - RETRO2_LTR 12874 0.0107 (32/2985) 0 * Os_TE_708460 Os_TE_708460 Chr11 27481680 27481679 + RETRO2_LTR 12874 0.0104 (31/2992) 0 * Os_TE_708461 Os_TE_708457 Chr11 27478602 27478603 + EnSpm-13_OS 11171 0.0404 (98/2425) 0 * Os_TE_708456 Os_TE_708456 Chr11 27478599 27478598 - EnSpm-13_OS 11171 0.0338 (98/2901) 0 * Os_TE_708457 Os_TE_708453 Chr11 27478070 27478071 + SPMLIKE 10989 0.0193 (47/2433) 0 * Os_TE_708452 Os_TE_708452 Chr11 27478067 27478066 - ORSgTETN00200001 10994 0.0193 (47/2431) 0 * Os_TE_708453 Os_TE_708449 Chr11 27476606 27476607 - RIREX_LTR 8828 0.0013 (3/2391) 0 * Os_TE_708448 Os_TE_708448 Chr11 27476602 27476601 + RIREX_LTR 8828 0.0013 (3/2391) 0 * Os_TE_708449 Os_TE_708431 Chr11 27473100 27473099 + RIREX_LTR 8828 0.0169 (41/2424) 0 * * Os_TE_708426 Chr11 27472485 27472484 - TRUNCATOR 2918 0.0013 (3/2357) 0 * Os_TE_708425 Os_TE_708425 Chr11 27472484 27472485 + TRUNCATOR 2918 0.0013 (3/2347) 0 * Os_TE_708426 Os_TE_708424 Chr11 27472088 27472089 + RETRO1_LTR 8314 0.0319 (77/2414) 0 * Os_TE_708423 Os_TE_708423 Chr11 27472084 27472083 - RETRO1_LTR 8314 0.0318 (77/2425) 0 * Os_TE_708424 Os_TE_708417 Chr11 27471739 27471740 + ORSiTERTOOT00034 791 0.0316 (77/2440) 0 * * Os_TE_708414 Chr11 27471332 27471333 - RETROSAT4_LTR 13504 0.2081 (506/2432) 0 * * Os_TE_708408 Chr11 27470155 27470156 - ORSgTERT00201216 11284 0.0194 (44/2270) 0 * * Os_TE_708391 Chr11 27468566 27468567 + RIRE2_LTR 11306 0.0353 (81/2296) 0 * Os_TE_708390 Os_TE_708390 Chr11 27468562 27468561 - RIRE2_LTR 11306 0.0337 (78/2317) 0 * Os_TE_708391 Os_TE_708387 Chr11 27467566 27467567 + RIRE2_LTR 11306 0.0279 (52/1866) 0 * Os_TE_708386 Os_TE_708386 Chr11 27467562 27467561 - RIRE2_LTR 11306 0.0238 (55/2311) 0 * Os_TE_708387 Os_TE_708381 Chr11 27466647 27466648 - RIREX_LTR 8828 0.0395 (91/2305) 0 * Os_TE_708380 Os_TE_708380 Chr11 27466643 27466642 + RIREX_LTR 8828 0.0411 (95/2311) 0 * Os_TE_708381 Os_TE_708379 Chr11 27466596 27466597 + ORSiCMCM00100019 2717 0.0017 (4/2295) 0 * Os_TE_708378 Os_TE_708378 Chr11 27466592 27466591 - TRUNCATOR2_LTR 2904 0.0022 (5/2297) 0 * Os_TE_708379 Os_TE_708372 Chr11 27465943 27465942 + CACTA-B 1103 0.4779 (1094/2289) 0 * Os_TE_708371 Os_TE_708371 Chr11 27465942 27465943 - CACTA-I 1124 0.4750 (1083/2280) 0 * Os_TE_708372 Os_TE_708370 Chr11 27465699 27465700 - RIRE3A_LTR 10580 0.0235 (54/2294) 0 * Os_TE_708369 Os_TE_708369 Chr11 27465695 27465694 + ORSiTERTOOT00027 10853 0.0217 (50/2307) 0 * Os_TE_708370 Os_TE_708365 Chr11 27463978 27463979 + RETRO1_LTR 8314 0.0525 (115/2190) 0 * * Os_TE_708363 Chr11 27463637 27462267 - CACTA-I 1124 0.4676 (1046/2237) 1 Intact Os_TE_708362 Os_TE_708362 Chr11 27462267 27463637 + CACTA-H 1152 0.4897 (1114/2275) 1 Intact Os_TE_708363 Os_TE_708359 Chr11 27461774 27461775 - CACTA-H 1152 0.4653 (1046/2248) 0 * Os_TE_708358 Os_TE_708358 Chr11 27461772 27461771 + CACTA-H 1152 0.4745 (1088/2293) 0 * Os_TE_708359 Os_TE_708357 Chr11 27461093 27461094 + RETROSAT4_LTR 13504 0.0177 (40/2254) 0 * * Os_TE_708354 Chr11 27460693 27460694 + COPI2_LTR 4733 0.0432 (98/2266) 0 * Os_TE_708353 Os_TE_708353 Chr11 27460689 27460688 - COPI2_LTR 4733 0.0424 (96/2265) 0 * Os_TE_708354 Os_TE_708349 Chr11 27459952 27459951 - SZ-35LTR 3853 0.1544 (347/2248) 0 * * Os_TE_708332 Chr11 27453780 27458062 - SZ-48LTR 3632 0.2116 (408/1928) 1 Intact * Os_TE_708326 Chr11 27452965 27452966 - HATOS1 3488 0.1486 (336/2261) 0 * Os_TE_708325 Os_TE_708325 Chr11 27452958 27452957 + QINNIU 528 0.1409 (317/2250) 0 * Os_TE_708326 Os_TE_708324 Chr11 27452104 27452105 + RIRE5-LTR_OS 6427 0.0184 (42/2278) 0 * Os_TE_708323 Os_TE_708323 Chr11 27452097 27452096 - RIRE5-LTR_OS 6427 0.0193 (44/2279) 0 * Os_TE_708324 Os_TE_708317 Chr11 27450064 27450065 + SPMLIKE 10989 0.0467 (93/1993) 0 * * Os_TE_708316 Chr11 27449887 27449886 + TRUNCATOR 2918 0.0215 (44/2042) 0 * Os_TE_708315 Os_TE_708315 Chr11 27449886 27449887 - TRUNCATOR 2918 0.0046 (9/1941) 0 * Os_TE_708316 Os_TE_708310 Chr11 27449100 27449101 - RIREX_LTR 8828 0.0018 (4/2188) 0 * * Os_TE_708308 Chr11 27447988 27447989 - RETROSAT4_LTR 13504 0.1134 (265/2337) 0 * * Os_TE_708302 Chr11 27446840 27446841 - ORSgTETN00200001 10994 0.0575 (134/2331) 0 * * Os_TE_708294 Chr11 27445143 27445142 - STOWAWAY13_OS 251 0.0252 (74/2938) 0 * * Os_TE_708293 Chr11 27445035 27445036 + SPMLIKE 10989 0.0031 (9/2940) 0 * Os_TE_708292 Os_TE_708292 Chr11 27445034 27445033 - ORSgTETN00200001 10994 0.0024 (7/2936) 0 * Os_TE_708293 Os_TE_708291 Chr11 27444907 27444908 - RETRO2_LTR 12874 0.0221 (65/2939) 0 * Os_TE_708290 Os_TE_708290 Chr11 27444903 27444902 + ORSgTERTOOT00009 12852 0.0224 (66/2941) 0 * Os_TE_708291 Os_TE_708289 Chr11 27444813 27444812 - MERMITE18B 1306 0.0003 (1/2929) 0 * * Os_TE_708288 Chr11 27444799 27444798 + ORSgTEMT01700505 154 0.1782 (521/2923) 0 * * Os_TE_708287 Chr11 27444776 27444775 + MERMITEB 1610 0.0309 (76/2461) 0 * * Os_TE_708277 Chr11 27442604 27442603 - RIREX_LTR 8828 0.2167 (174/803) -1 * * Os_TE_708269 Chr11 27441635 27441636 - ORSgTETN00200001 10994 0.0013 (4/2971) 0 * Os_TE_708268 Os_TE_708268 Chr11 27441633 27441632 + SPMLIKE 10989 0.0014 (4/2897) 0 * Os_TE_708269 Os_TE_708263 Chr11 27440411 27440412 - RIREX_LTR 8828 0.0468 (140/2993) 0 * Os_TE_708262 Os_TE_708262 Chr11 27440407 27440406 + RIREX_LTR 8828 0.0468 (140/2992) 0 * Os_TE_708263 Os_TE_708256 Chr11 27439978 27439977 - ORSgTETN00200001 10994 0.0138 (17/1228) 0 * * Os_TE_708255 Chr11 27438938 27439989 + YIREN 905 0.4740 (1213/2559) 1 Intact * Os_TE_708253 Chr11 27437516 27437515 - ORSgTEMT00900935 248 0.5466 (1407/2574) 0 * Os_TE_708252 Os_TE_708252 Chr11 27437512 27437513 + ORSgTEMT00900053 249 0.5196 (1270/2444) 0 * Os_TE_708253 Os_TE_708250 Chr11 27437442 27437441 + COPI2_LTR 4733 0.0005 (1/2081) 0 * * Os_TE_708248 Chr11 27436753 27436754 - RIRE2_LTR 11306 0.0197 (20/1015) 0 * Os_TE_708247 Os_TE_708247 Chr11 27436749 27436748 - ORSgTERT00201216 11284 0.0166 (20/1207) 0 * Os_TE_708248 Os_TE_708246 Chr11 27436660 27436661 - MuDR4_OS 7610 0.0114 (14/1229) 0 * Os_TE_708245 Os_TE_708245 Chr11 27436653 27436652 - MuDR4_OS 7610 0.0122 (15/1232) 0 * Os_TE_708246 Os_TE_708225 Chr11 27430535 27430536 - ORSgTETN00200001 10994 0.0041 (5/1223) 0 * * Os_TE_708224 Chr11 27429356 27429355 + SEVERIN-2 1952 0.0348 (42/1208) 0 * * Os_TE_708187 Chr11 27419432 27419431 + RETROSAT4_LTR 13504 0.4923 (479/973) 0 * * Os_TE_708184 Chr11 27417688 27417689 + ENSPM4_OS 11610 0.0043 (12/2809) 0 * * Os_TE_708179 Chr11 27417231 27417230 - OSTE15 1168 0.0014 (4/2876) 0 * * Os_TE_708178 Chr11 27417128 27417129 - ORSgTEMT00502171 134 0.1314 (387/2946) 0 * * Os_TE_708177 Chr11 27417124 27417123 + ORSgTEMT00502327 143 0.1877 (557/2968) 0 * * Os_TE_708176 Chr11 27417120 27417121 + ORSgTEMT00500201 140 0.1404 (390/2778) 0 * * Os_TE_708174 Chr11 27416794 27416795 - AMYLTP 383 0.0922 (254/2756) 0 * * Os_TE_708171 Chr11 27416249 27416250 + ORSgTETNOOT02577 232 0.1277 (364/2850) 0 * * Os_TE_708168 Chr11 27415944 27415943 + DS-RICE4N 715 0.0144 (43/2981) 0 * * Os_TE_708167 Chr11 27413346 27413347 - ORSiTERT00200154 9386 0.0037 (11/2936) 0 * Os_TE_708166 Os_TE_708166 Chr11 27413340 27413339 + TRUNCATOR 2918 0.0041 (12/2933) 0 * Os_TE_708167 Os_TE_708154 Chr11 27410412 27410413 + TELIA 141 0.0501 (143/2853) 0 * * Os_TE_708148 Chr11 27410096 27410097 - RIREX_LTR 8828 0.0170 (50/2947) 0 * Os_TE_708147 Os_TE_708147 Chr11 27410092 27410091 + RIREX_LTR 8828 0.0153 (45/2943) 0 * Os_TE_708148 Os_TE_708142 Chr11 27408382 27408383 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * * Os_TE_708140 Chr11 27407874 27407875 - ORSiTETNOOT00200 3563 0.0094 (28/2991) 0 * Os_TE_708139 Os_TE_708139 Chr11 27407867 27407866 + TWIFBIG 3567 0.0087 (26/2991) 0 * Os_TE_708140 Os_TE_708129 Chr11 27406318 27406317 - ORSiTERTOOT00333 4719 0.0010 (3/2994) 0 * * Os_TE_708124 Chr11 27398999 27399000 - ORSgTETNOOT01028 232 0.1706 (496/2908) 0 * Os_TE_708123 Os_TE_708123 Chr11 27398985 27398984 + ORSgTETNOOT01668 244 0.1837 (543/2956) 0 * Os_TE_708124 Os_TE_708120 Chr11 27398861 27398862 - ORSgTEMT01601696 238 0.0891 (251/2818) 0 * * Os_TE_708113 Chr11 27398033 27398034 + RIREX_LTR 8828 0.0622 (184/2956) 0 * * Os_TE_708110 Chr11 27397807 27397808 - F770 284 0.2240 (662/2955) 0 * * Os_TE_708103 Chr11 27396832 27396833 + SPMLIKE 10989 0.0003 (1/2884) 0 * * Os_TE_708102 Chr11 27396708 27396709 - RIREX_LTR 8828 0.0147 (43/2922) 0 * Os_TE_708101 Os_TE_708101 Chr11 27396704 27396703 + RIREX_LTR 8828 0.0150 (44/2933) 0 * Os_TE_708102 Os_TE_708098 Chr11 27396659 27396660 + RIREX_LTR 8828 0.1083 (315/2909) 0 * Os_TE_708097 Os_TE_708097 Chr11 27396653 27396652 - RIREX_LTR 8828 0.1091 (320/2934) 0 * Os_TE_708098 Os_TE_708096 Chr11 27396635 27396636 + SEVERIN-2 1952 0.0274 (80/2920) 0 * * Os_TE_708095 Chr11 27395843 27395842 - ORSgTEMT01601493 303 0.0003 (1/2960) 0 * Os_TE_708094 Os_TE_708094 Chr11 27395834 27395835 - ORSgTEMT01601432 239 0.0003 (1/2958) 0 * Os_TE_708095 Os_TE_708093 Chr11 27395685 27395686 - RIREX_LTR 8828 0.0020 (6/2968) 0 * Os_TE_708092 Os_TE_708092 Chr11 27395681 27395680 + RIREX_LTR 8828 0.0017 (5/2971) 0 * Os_TE_708093 Os_TE_708082 Chr11 27394135 27394136 - STOWAWAY44_OS 240 0.0010 (3/2881) 0 * * Os_TE_708081 Chr11 27394048 27394049 + SPMLIKE 10989 0.1051 (308/2930) 0 * Os_TE_708080 Os_TE_708080 Chr11 27394046 27394045 - ORSgTETN00200001 10994 0.1111 (327/2943) 0 * Os_TE_708081 Os_TE_708079 Chr11 27393946 27393947 + SPMLIKE 10989 0.0003 (1/2935) 0 * Os_TE_708078 Os_TE_708078 Chr11 27393944 27393943 - SPMLIKE 10989 0.0003 (1/2919) 0 * Os_TE_708079 Os_TE_708062 Chr11 27390786 27390785 + OSTONOR1_LTR 6440 0.0040 (12/2992) 0 * * Os_TE_708061 Chr11 27390657 27390658 - RIRE2_LTR 11306 0.0010 (3/2995) 0 * * Os_TE_708058 Chr11 27390569 27390568 - DS-RICE2N 613 0.0123 (37/2999) 0 * * Os_TE_708056 Chr11 27389700 27389701 - RIRE2_LTR 11306 0.0003 (1/2946) 0 * * Os_TE_708053 Chr11 27389624 27389623 - CACTA-I 1124 0.0034 (10/2957) 0 * * Os_TE_708052 Chr11 27388987 27388988 - OSTE24 683 0.0014 (4/2842) 0 * * Os_TE_708051 Chr11 27388978 27388977 - ORSgTEMT01601834 234 0.0017 (5/2924) 0 * * Os_TE_708047 Chr11 27388949 27388950 + MuDR3_OS 8604 0.3431 (994/2897) 0 * Os_TE_708046 Os_TE_708046 Chr11 27388942 27388941 + MuDR3_OS 8604 0.3382 (972/2874) 0 * Os_TE_708047 Os_TE_708045 Chr11 27388872 27388871 + OSTE21 1271 0.0024 (7/2883) 0 * * Os_TE_708044 Chr11 27388460 27388461 + TWIFBIG 3567 0.0004 (1/2687) 0 * Os_TE_708043 Os_TE_708043 Chr11 27388453 27388452 - ORSiTETNOOT00216 3569 0.0004 (1/2728) 0 * Os_TE_708044 Os_TE_708036 Chr11 27382550 27382551 + RETRO1_LTR 8314 0.1824 (543/2977) 0 * Os_TE_708035 Os_TE_708035 Chr11 27382546 27382545 - RETRO1_LTR 8314 0.1826 (542/2968) 0 * Os_TE_708036 Os_TE_708029 Chr11 27381252 27381251 - SZ-52_LTR 13107 0.0031 (9/2897) 0 * * Os_TE_708010 Chr11 27368542 27368543 - SINE9_OS 293 0.0057 (17/2990) 0 * * Os_TE_708008 Chr11 27366702 27366701 - RIRE2_LTR 11306 0.0027 (8/2991) 0 * * Os_TE_708006 Chr11 27365577 27365576 - RIRE2_LTR 11306 0.0365 (109/2984) 0 * * Os_TE_708005 Chr11 27365230 27365231 + RIREX_LTR 8828 0.0240 (72/2994) 0 * Os_TE_708004 Os_TE_708004 Chr11 27365226 27365225 - RIREX_LTR 8828 0.0230 (69/2997) 0 * Os_TE_708005 Os_TE_708003 Chr11 27364763 27364764 - TRUNCATOR 2918 0.0013 (4/2991) 0 * * Os_TE_708001 Chr11 27364471 27364472 + RIREX_LTR 8828 0.0107 (32/2997) 0 * Os_TE_708000 Os_TE_708000 Chr11 27364467 27364466 - RIREX_LTR 8828 0.0114 (34/2995) 0 * Os_TE_708001 Os_TE_707999 Chr11 27364109 27364110 - ORSgTEMT01601432 239 0.0367 (109/2966) 0 * * Os_TE_707997 Chr11 27363703 27363450 - ORSgTEMT00900892 250 0.7554 (2255/2985) 1 Intact * Os_TE_707992 Chr11 27363446 27363447 + STOWAWAY47_OS 148 0.0927 (230/2480) 0 * * Os_TE_707990 Chr11 27362969 27362970 - SEVERIN-2 1952 0.0137 (34/2473) 0 * * Os_TE_707989 Chr11 27362804 27362803 + TREP215 239 0.1321 (326/2468) 0 * * Os_TE_707988 Chr11 27362800 27362801 - ORSgTEMT01601881 239 0.1273 (311/2443) 0 * * Os_TE_707987 Chr11 27362797 27362796 + ORSgTEMT01601525 239 0.0004 (1/2460) 0 * * Os_TE_707985 Chr11 27362315 27362316 - SZ-35LTR 3853 0.0029 (7/2446) 0 * Os_TE_707984 Os_TE_707984 Chr11 27362311 27362310 + RETROSAT4_LTR 13504 0.0028 (7/2465) 0 * Os_TE_707985 Os_TE_707983 Chr11 27362276 27362275 + OSMU5 4881 0.0434 (107/2465) 0 * * Os_TE_707980 Chr11 27361961 27361960 - OSTONOR1_LTR 6440 0.0169 (42/2491) 0 * * Os_TE_707979 Chr11 27361865 27361866 - RIREX_LTR 8828 0.0328 (71/2163) 0 * * Os_TE_707976 Chr11 27361833 27361832 + RIRE2_LTR 11306 0.0144 (31/2155) 0 * * Os_TE_707967 Chr11 27357761 27357762 + SZ-48LTR 3632 0.0227 (49/2155) 0 * * Os_TE_707965 Chr11 27357695 27357696 - RETROSAT4_LTR 13504 0.1671 (349/2089) 0 * * Os_TE_707912 Chr11 27331503 27331504 - RIREX_LTR 8828 0.0056 (10/1784) 0 * * Os_TE_707907 Chr11 27331180 27331181 + RIREX_LTR 8828 0.0005 (1/1852) 0 * * Os_TE_707901 Chr11 27330376 27330375 + SZ-55_LTR 10318 0.0217 (44/2031) 0 * * Os_TE_707898 Chr11 27328622 27328621 + SZ-48LTR 3632 0.0215 (40/1858) 0 * * Os_TE_707876 Chr11 27325050 27325049 + TRSA_OS 353 0.0005 (1/2016) 0 * * Os_TE_707874 Chr11 27325040 27325041 + RIREX_LTR 8828 0.0020 (4/2018) 0 * * Os_TE_707863 Chr11 27320104 27320105 - RIREX_LTR 8828 0.0005 (1/1820) 0 * Os_TE_707862 Os_TE_707862 Chr11 27320100 27320099 + RIREX_LTR 8828 0.0005 (1/1821) 0 * Os_TE_707863 Os_TE_707861 Chr11 27319606 27319605 + ENSPM4_OS 11610 0.0005 (1/2219) 0 * * Os_TE_707841 Chr11 27315001 27315002 - RETROFIT7_LTR 4788 0.0033 (6/1809) 0 * Os_TE_707840 Os_TE_707840 Chr11 27314997 27314996 + RETROFIT7_LTR 4788 0.0036 (6/1678) 0 * Os_TE_707841 Os_TE_707832 Chr11 27313995 27313996 + COPI2_LTR 4733 0.0005 (1/1822) 0 * Os_TE_707831 Os_TE_707831 Chr11 27313991 27313990 - COPI2_LTR 4733 0.0005 (1/1832) 0 * Os_TE_707832 Os_TE_707821 Chr11 27313214 27313215 - ORSiTERT00200154 9386 0.2595 (469/1807) 0 * Os_TE_707820 Os_TE_707820 Chr11 27313208 27313207 + TRUNCATOR 2918 0.2609 (474/1817) 0 * Os_TE_707821 Os_TE_707786 Chr11 27297882 27297883 + RIREX_LTR 8828 0.0006 (1/1795) 0 * Os_TE_707785 Os_TE_707785 Chr11 27297878 27297877 - RIREX_LTR 8828 0.0006 (1/1793) 0 * Os_TE_707786 Os_TE_707724 Chr11 27281655 27281656 + RIREX_LTR 8828 0.0027 (8/2945) 0 * * Os_TE_707723 Chr11 27281062 27281063 - RIREX_LTR 8828 0.5690 (742/1304) 0 * * Os_TE_707721 Chr11 27281023 27281022 - ORSgTEMT01400022 212 0.0019 (5/2624) 0 * Os_TE_707720 Os_TE_707720 Chr11 27281017 27281018 - ORSgTEMT01400019 216 0.0028 (5/1784) 0 * Os_TE_707721 Os_TE_707717 Chr11 27279891 27279890 - OSTE33 1012 0.3739 (421/1126) 0 * * Os_TE_707716 Chr11 27279725 27279726 - COPIA2-LTR_OS 6433 0.0379 (43/1134) 0 * Os_TE_707715 Os_TE_707715 Chr11 27279721 27279720 + COPIA2-LTR_OS 6433 0.0361 (41/1136) 0 * Os_TE_707716 Os_TE_707670 Chr11 27259907 27259908 - F569 228 0.0008 (2/2596) 0 * Os_TE_707669 Os_TE_707669 Chr11 27259906 27259905 + F569 228 0.0008 (2/2600) 0 * Os_TE_707670 Os_TE_707649 Chr11 27252942 27252941 - SZ-35LTR 3853 0.0031 (8/2556) 0 * * Os_TE_707643 Chr11 27251985 27251986 + SZ-62LTR 3649 0.0039 (10/2596) 0 * Os_TE_707642 Os_TE_707642 Chr11 27251981 27251980 - SZ-62LTR 3649 0.0040 (10/2496) 0 * Os_TE_707643 Os_TE_707612 Chr11 27237261 27237262 + CACTA-D 1038 0.0023 (6/2649) 0 * * Os_TE_707607 Chr11 27233765 27233766 + TWIFBIG 3567 0.0033 (3/918) 0 * * Os_TE_707591 Chr11 27229564 27229565 - TRUNCATOR2_LTR 2904 0.0026 (7/2670) 0 * * Os_TE_707582 Chr11 27227521 27227522 - SZ-62LTR 3649 0.2105 (285/1354) 0 * * Os_TE_707578 Chr11 27227028 27227027 - Cassandra_OS-LTR 764 0.0038 (8/2092) 0 * * Os_TE_707547 Chr11 27220993 27220994 - RIREX_LTR 8828 0.0153 (34/2226) 0 * Os_TE_707546 Os_TE_707546 Chr11 27220989 27220988 + RIREX_LTR 8828 0.0218 (48/2197) 0 * Os_TE_707547 Os_TE_707536 Chr11 27219511 27219512 - RIRE2_LTR 11306 0.0011 (1/918) 0 * Os_TE_707535 Os_TE_707535 Chr11 27219507 27219506 - ORSgTERT00201216 11284 0.0011 (1/911) 0 * Os_TE_707536 Os_TE_707520 Chr11 27213038 27213039 - COPIA2-LTR_OS 6433 0.0053 (16/2996) 0 * Os_TE_707519 Os_TE_707519 Chr11 27213034 27213033 + COPIA2-LTR_OS 6433 0.0053 (16/2995) 0 * Os_TE_707520 Os_TE_707518 Chr11 27213013 27213014 + COPI2_LTR 4733 0.0003 (1/2997) 0 * Os_TE_707517 Os_TE_707517 Chr11 27213009 27213008 - COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_707518 Os_TE_707515 Chr11 27212229 27212230 - RIREX_LTR 8828 0.0003 (1/2981) 0 * Os_TE_707514 Os_TE_707514 Chr11 27212225 27212224 + RIREX_LTR 8828 0.0003 (1/2981) 0 * Os_TE_707515 Os_TE_707513 Chr11 27212065 27212066 + ORSgTEMT03400012 238 0.3799 (1132/2980) 0 * Os_TE_707512 Os_TE_707512 Chr11 27212060 27212059 - TAMI2 254 0.3810 (1137/2984) 0 * Os_TE_707513 Os_TE_707510 Chr11 27211342 27211343 - MDR2 6967 0.0030 (9/2979) 0 * Os_TE_707509 Os_TE_707509 Chr11 27211334 27211333 + MDR2 6967 0.0034 (10/2979) 0 * Os_TE_707510 Os_TE_707499 Chr11 27207820 27207821 + DS-RICE2N 613 0.0817 (232/2840) 0 * * Os_TE_707498 Chr11 27207376 27207375 + STOWAWAY51_OS 246 0.0201 (59/2933) 0 * * Os_TE_707492 Chr11 27203767 27203766 - SEVERIN-2 1952 0.0013 (4/2977) 0 * Os_TE_707491 Os_TE_707491 Chr11 27203766 27203767 + SEVERIN-2 1952 0.0013 (4/2987) 0 * Os_TE_707492 Os_TE_707490 Chr11 27203660 27203661 - NDNA1TNA_OS 334 0.0983 (273/2777) 0 * Os_TE_707489 Os_TE_707489 Chr11 27203658 27203657 + NDNA1TNA_OS 334 0.0903 (270/2991) 0 * Os_TE_707490 Os_TE_707488 Chr11 27203590 27203591 - MDR2 6967 0.1423 (426/2994) 0 * Os_TE_707487 Os_TE_707487 Chr11 27203583 27203582 + MDR2 6967 0.1430 (428/2992) 0 * Os_TE_707488 Os_TE_707478 Chr11 27201219 27201218 - DS-RICE2N 613 0.0100 (30/2997) 0 * * Os_TE_707476 Chr11 27201123 27201124 - COPIA2-LTR_OS 6433 0.0003 (1/2983) 0 * * Os_TE_707474 Chr11 27200357 27200358 + RIREX_LTR 8828 0.0013 (4/2983) 0 * Os_TE_707473 Os_TE_707473 Chr11 27200353 27200352 - RIREX_LTR 8828 0.0013 (4/2982) 0 * Os_TE_707474 Os_TE_707470 Chr11 27197441 27197442 - SC-8_LTR 4951 0.0003 (1/2899) 0 * * Os_TE_707464 Chr11 27197099 27197098 + ORSiTERTOOT00381 4988 0.0007 (2/2960) 0 * * Os_TE_707462 Chr11 27196831 27196832 + ORSgTEMT00500526 152 0.0020 (6/2971) 0 * Os_TE_707461 Os_TE_707461 Chr11 27196829 27196828 + ORSgTEMT00500361 192 0.0017 (5/2974) 0 * Os_TE_707462 Os_TE_707460 Chr11 27196423 27196424 - SC-3_LTR 5748 0.0003 (1/2975) 0 * * Os_TE_707458 Chr11 27195519 27195520 - NDNA1TNA_OS 334 0.0903 (270/2990) 0 * Os_TE_707457 Os_TE_707457 Chr11 27195517 27195516 + NDNA1TNA_OS 334 0.0905 (271/2994) 0 * Os_TE_707458 Os_TE_707456 Chr11 27194511 27194510 - NDNA1TNA_OS 334 0.0779 (219/2813) 0 * Os_TE_707455 Os_TE_707455 Chr11 27194510 27194511 + NDNA1TNA_OS 334 0.0591 (171/2894) 0 * Os_TE_707456 Os_TE_707454 Chr11 27193914 27193913 + ORSgTEMT00502171 134 0.0814 (244/2996) 0 * * Os_TE_707451 Chr11 27193702 27193701 + ORSgTEMT01601591 242 0.0338 (94/2782) 0 * * Os_TE_707450 Chr11 27193699 27193700 + ORSgTEMT01601591 242 0.0317 (95/2995) 0 * Os_TE_707449 Os_TE_707449 Chr11 27193694 27193693 + ORSgTEMT01600726 235 0.0314 (94/2992) 0 * Os_TE_707450 Os_TE_707448 Chr11 27193411 27193412 + NDNA1TNA_OS 334 0.0134 (40/2988) 0 * Os_TE_707447 Os_TE_707447 Chr11 27193409 27193408 - NDNA1TNA_OS 334 0.0130 (39/2994) 0 * Os_TE_707448 Os_TE_707445 Chr11 27193162 27193163 + OLO24 345 0.0154 (46/2985) 0 * Os_TE_707444 Os_TE_707444 Chr11 27193160 27193159 - OLO24 345 0.0154 (46/2990) 0 * Os_TE_707445 Os_TE_707442 Chr11 27193140 27193141 - STOWAWAY51_OS 246 0.0003 (1/2988) 0 * * Os_TE_707440 Chr11 27192656 27192657 - STOWAWAY45_OS 266 0.0025 (7/2758) 0 * * Os_TE_707432 Chr11 27190553 27190554 + NDNA1TNA_OS 334 0.0224 (67/2994) 0 * Os_TE_707431 Os_TE_707431 Chr11 27190551 27190550 - ORSgTEMT00101341 314 0.0656 (68/1036) 0 * Os_TE_707432 Os_TE_707429 Chr11 27190349 27190350 - NDNA1TNA_OS 334 0.0020 (6/2992) 0 * Os_TE_707428 Os_TE_707428 Chr11 27190347 27190346 + NDNA1TNA_OS 334 0.0020 (6/2995) 0 * Os_TE_707429 Os_TE_707426 Chr11 27189646 27189400 + STOWAWAY51_OS 246 0.8804 (2629/2986) 1 Intact * Os_TE_707419 Chr11 27189171 27188874 - UNIQUE 158 0.8987 (2590/2882) 1 Intact * Os_TE_707413 Chr11 27188854 27188855 - CLOUD 734 0.0861 (245/2844) 0 * * Os_TE_707399 Chr11 27187696 27187697 + MDR2 6967 0.0027 (8/2913) 0 * Os_TE_707398 Os_TE_707398 Chr11 27187685 27187684 - MDR2 6967 0.0027 (8/2911) 0 * Os_TE_707399 Os_TE_707397 Chr11 27187651 27187652 + MDR2 6967 0.0025 (7/2773) 0 * Os_TE_707396 Os_TE_707396 Chr11 27187642 27187641 - MDR2 6967 0.0020 (6/2930) 0 * Os_TE_707397 Os_TE_707395 Chr11 27187536 27187535 - OSTE18 129 0.1330 (391/2940) 0 * * Os_TE_707394 Chr11 27187535 27187536 + NDNA1TNA_OS 334 0.0024 (6/2453) 0 * * Os_TE_707383 Chr11 27186949 27186950 + NDNA1TNA_OS 334 0.0115 (34/2962) 0 * * Os_TE_707380 Chr11 27186888 27186889 + NDNA1TNA_OS 334 0.0095 (28/2962) 0 * Os_TE_707379 Os_TE_707379 Chr11 27186886 27186885 - NDNA1TNA_OS 334 0.0104 (31/2967) 0 * Os_TE_707380 Os_TE_707361 Chr11 27184542 27184543 - RIREX_LTR 8828 0.0014 (4/2864) 0 * Os_TE_707360 Os_TE_707360 Chr11 27184538 27184537 + RIREX_LTR 8828 0.0013 (4/2974) 0 * Os_TE_707361 Os_TE_707354 Chr11 27183992 27183993 - COPIA2-LTR_OS 6433 0.0013 (4/2965) 0 * Os_TE_707353 Os_TE_707353 Chr11 27183988 27183987 + COPIA2-LTR_OS 6433 0.0014 (4/2962) 0 * Os_TE_707354 Os_TE_707352 Chr11 27183673 27183674 + COPIA2-LTR_OS 6433 0.0007 (2/2981) 0 * Os_TE_707351 Os_TE_707351 Chr11 27183669 27183668 - COPIA2-LTR_OS 6433 0.0007 (2/2983) 0 * Os_TE_707352 Os_TE_707350 Chr11 27183619 27183620 - RIREX_LTR 8828 0.0003 (1/2987) 0 * Os_TE_707349 Os_TE_707349 Chr11 27183615 27183614 + RIREX_LTR 8828 0.0003 (1/2987) 0 * Os_TE_707350 Os_TE_707338 Chr11 27179269 27179270 + SC-3_LTR 5748 0.1295 (387/2988) 0 * Os_TE_707337 Os_TE_707337 Chr11 27179265 27179264 - SC-3_LTR 5748 0.1332 (398/2987) 0 * Os_TE_707338 Os_TE_707330 Chr11 27177230 27177231 + RIRE2_LTR 11306 0.0003 (1/2992) 0 * Os_TE_707329 Os_TE_707329 Chr11 27177226 27177225 - RIRE2_LTR 11306 0.0003 (1/2992) 0 * Os_TE_707330 Os_TE_707328 Chr11 27176458 27176459 - RIRE5-LTR_OS 6427 0.0656 (196/2986) 0 * Os_TE_707327 Os_TE_707327 Chr11 27176451 27176450 + RIRE5-LTR_OS 6427 0.0622 (185/2973) 0 * Os_TE_707328 Os_TE_707326 Chr11 27175429 27175430 + TRUNCATOR 2918 0.0640 (190/2971) 0 * * Os_TE_707324 Chr11 27174668 27174669 - ORSgTERT00201216 11284 0.0020 (6/2988) 0 * Os_TE_707323 Os_TE_707323 Chr11 27174664 27174663 - RIRE2_LTR 11306 0.0023 (7/2990) 0 * Os_TE_707324 Os_TE_707322 Chr11 27174308 27170439 - RETROSAT4_LTR 13504 0.0318 (95/2988) 1 Solo_LTR Os_TE_707320 Os_TE_707320 Chr11 27170439 27174308 + RETROSAT4_LTR 13504 0.0311 (93/2988) 1 Solo_LTR Os_TE_707322 Os_TE_707319 Chr11 27169910 27169911 + RETROSAT4_LTR 13504 0.0251 (74/2944) 0 * Os_TE_707318 Os_TE_707318 Chr11 27169906 27169905 - RETROSAT4_LTR 13504 0.0269 (80/2973) 0 * Os_TE_707319 Os_TE_707317 Chr11 27169612 27169613 + TWIFBIG 3567 0.0030 (9/2959) 0 * Os_TE_707316 Os_TE_707316 Chr11 27169605 27169604 - ORSiTETNOOT00216 3569 0.0027 (8/2958) 0 * Os_TE_707317 Os_TE_707315 Chr11 27169595 27169596 + ORSiTERTOOT00367 5639 0.0003 (1/2961) 0 * Os_TE_707314 Os_TE_707314 Chr11 27169591 27169590 - ORSiTERTOOT00367 5639 0.0003 (1/2960) 0 * Os_TE_707315 Os_TE_707312 Chr11 27169408 27169409 + SZ-52_LTR 13107 0.0020 (6/2975) 0 * Os_TE_707311 Os_TE_707311 Chr11 27169404 27169403 - SZ-52_LTR 13107 0.0020 (6/2975) 0 * Os_TE_707312 Os_TE_707310 Chr11 27169260 27169261 - RETROSAT2LTRA 3112 0.0131 (39/2967) 0 * Os_TE_707309 Os_TE_707309 Chr11 27169256 27169255 + RETROSAT3_LTR 11537 0.0129 (38/2954) 0 * Os_TE_707310 Os_TE_707308 Chr11 27168270 27168271 - SC-4_LTR 5218 0.0003 (1/2895) 0 * Os_TE_707307 Os_TE_707307 Chr11 27168266 27168265 + SC-4_LTR 5218 0.0003 (1/2879) 0 * Os_TE_707308 Os_TE_707306 Chr11 27167815 27167816 - DS-RICE2N 613 0.0020 (6/2953) 0 * Os_TE_707305 Os_TE_707305 Chr11 27167808 27167807 + DS-RICE4N 715 0.0020 (6/2950) 0 * Os_TE_707306 Os_TE_707304 Chr11 27167790 27167791 + TWIFBIG 3567 0.0014 (4/2949) 0 * * Os_TE_707302 Chr11 27167708 27167709 + TWIFBIG 3567 0.0726 (212/2920) 0 * Os_TE_707301 Os_TE_707301 Chr11 27167701 27167700 - ORSiTETNOOT00200 3563 0.0891 (264/2962) 0 * Os_TE_707302 Os_TE_707300 Chr11 27167269 27167270 - RIRE2_LTR 11306 0.0037 (11/2997) 0 * Os_TE_707299 Os_TE_707299 Chr11 27167265 27167264 + RIRE2_LTR 11306 0.0037 (11/2994) 0 * Os_TE_707300 Os_TE_707297 Chr11 27167067 27167066 - ORSgTEMT01602413 239 0.0017 (5/2989) 0 * Os_TE_707296 Os_TE_707296 Chr11 27167064 27167065 - ORSgTEMT01600507 239 0.0013 (4/2995) 0 * Os_TE_707297 Os_TE_707294 Chr11 27166758 27166759 + SEVERIN-2 1952 0.0254 (76/2987) 0 * * Os_TE_707293 Chr11 27166477 27166478 + RIRE2_LTR 11306 0.0040 (12/2986) 0 * Os_TE_707292 Os_TE_707292 Chr11 27166473 27166472 - RIRE2_LTR 11306 0.0040 (12/2982) 0 * Os_TE_707293 Os_TE_707285 Chr11 27158186 27158187 + SC-8_LTR 4951 0.0013 (4/2992) 0 * Os_TE_707284 Os_TE_707284 Chr11 27158182 27158181 - SC-8_LTR 4951 0.0013 (4/2995) 0 * Os_TE_707285 Os_TE_707282 Chr11 27157063 27157064 - TOS17LTR 138 0.0047 (14/2961) 0 * Os_TE_707281 Os_TE_707281 Chr11 27157059 27157058 + TOS17LTR 138 0.0047 (14/2956) 0 * Os_TE_707282 Os_TE_707280 Chr11 27157002 27157003 - COPIA2-LTR_OS 6433 0.0017 (5/2967) 0 * Os_TE_707279 Os_TE_707279 Chr11 27156998 27156997 + COPIA2-LTR_OS 6433 0.0014 (4/2952) 0 * Os_TE_707280 Os_TE_707278 Chr11 27156679 27156680 - SZ-48LTR 3632 0.0561 (166/2961) 0 * Os_TE_707277 Os_TE_707277 Chr11 27156675 27156674 + SZ-48LTR 3632 0.0545 (161/2956) 0 * Os_TE_707278 Os_TE_707266 Chr11 27154027 27154028 + MERMITEA 1710 0.1314 (390/2968) 0 * Os_TE_707265 Os_TE_707265 Chr11 27154019 27154018 + MERMITEA 1710 0.1326 (395/2978) 0 * Os_TE_707266 Os_TE_707264 Chr11 27153979 27153980 - MERMITED 1572 0.0319 (95/2979) 0 * Os_TE_707263 Os_TE_707263 Chr11 27153977 27153976 - MERMITED 1572 0.0238 (70/2941) 0 * Os_TE_707264 Os_TE_707246 Chr11 27150294 27150295 + RETRO2A_LTR 12895 0.0007 (2/2943) 0 * Os_TE_707245 Os_TE_707245 Chr11 27150290 27150289 - RETRO1_LTR 8314 0.0007 (2/2979) 0 * Os_TE_707246 Os_TE_707234 Chr11 27148420 27148419 - SZ-35LTR 3853 0.0004 (1/2836) 0 * * Os_TE_707221 Chr11 27146170 27148041 + Cassandra_OS-LTR 764 0.0325 (89/2738) 1 Intact * Os_TE_707214 Chr11 27145866 27145865 + SEVERIN-2 1952 0.0010 (3/2871) 0 * * Os_TE_707200 Chr11 27143098 27143099 - RETROSAT2LTR 12796 0.0004 (1/2736) 0 * * Os_TE_707195 Chr11 27142182 27142183 - COPI2_LTR 4733 0.0011 (3/2803) 0 * Os_TE_707194 Os_TE_707194 Chr11 27142178 27142177 + COPI2_LTR 4733 0.0011 (3/2800) 0 * Os_TE_707195 Os_TE_707172 Chr11 27123321 27123322 - RIREX_LTR 8828 0.0003 (1/2906) 0 * * Os_TE_707169 Chr11 27122559 27122558 + OSTE20 496 0.7709 (2184/2833) 0 * * Os_TE_707167 Chr11 27120886 27120887 + ENSPM6_OS 9815 0.0028 (8/2905) 0 * Os_TE_707166 Os_TE_707166 Chr11 27120884 27120883 - ENSPM5_OS 9581 0.0028 (8/2906) 0 * Os_TE_707167 Os_TE_707164 Chr11 27120481 27120480 + OSTE33 1012 0.0039 (11/2846) 0 * * Os_TE_707158 Chr11 27119471 27119472 + OSTE33 1012 0.0072 (21/2905) 0 * Os_TE_707157 Os_TE_707157 Chr11 27119462 27119461 + OSTE33 1012 0.0171 (49/2860) 0 * Os_TE_707158 Os_TE_707156 Chr11 27118878 27118879 + NDNA1TNA_OS 334 0.0169 (6/356) 0 * Os_TE_707155 Os_TE_707155 Chr11 27118876 27118875 - NDNA1TNA_OS 334 0.0017 (5/2959) 0 * Os_TE_707156 Os_TE_707146 Chr11 27116268 27116267 - TESS 244 0.0007 (2/2759) 0 * * Os_TE_707142 Chr11 27115369 27115368 - SEVERIN-2 1952 0.0397 (82/2067) 0 * * Os_TE_707140 Chr11 27114526 27114525 + RETROFIT4_LTR 4809 0.0005 (1/2124) 0 * * Os_TE_707138 Chr11 27113627 27113626 + F524 291 0.5317 (578/1087) 0 * * Os_TE_707137 Chr11 27112736 27112737 + MDR2 6967 0.0790 (236/2989) 0 * Os_TE_707136 Os_TE_707136 Chr11 27112728 27112727 - MDR2 6967 0.0363 (104/2864) 0 * Os_TE_707137 Os_TE_707134 Chr11 27111851 27111612 - ORSgTEMT01600639 228 0.6851 (2039/2976) 1 Intact Os_TE_707132 Os_TE_707132 Chr11 27111612 27111851 - ORSgTEMT01601208 238 0.6835 (2021/2957) 1 Intact Os_TE_707134 Os_TE_707128 Chr11 27110536 27110774 + ORSgTEMT01602181 239 0.2148 (461/2146) 1 Intact * Os_TE_707127 Chr11 27110491 27110492 + RETROSAT2LTR 12796 0.0079 (17/2153) 0 * * Os_TE_707123 Chr11 27109366 27109367 - SZ-52_LTR 13107 0.0003 (1/2990) 0 * * Os_TE_707115 Chr11 27107087 27107088 + RIREX_LTR 8828 0.0003 (1/2992) 0 * * Os_TE_707109 Chr11 27101194 27101193 - SC-7_LTR 4431 0.0005 (1/2183) 0 * * Os_TE_707094 Chr11 27089410 27089409 - SZ-35LTR 3853 0.0208 (58/2792) 0 * * Os_TE_707093 Chr11 27089316 27089317 - SZ-48LTR 3632 0.0003 (1/2987) 0 * * Os_TE_707086 Chr11 27088142 27081053 - LINE-7_OS 7090 0.0721 (201/2786) 1 Intact Os_TE_707085 Os_TE_707085 Chr11 27081053 27088142 + LINE-7_OS 7090 0.0686 (204/2974) 1 Intact Os_TE_707086 Os_TE_707080 Chr11 27079993 27079992 - ORSiTERTOOT00402 2660 0.0004 (1/2767) 0 * * Os_TE_707077 Chr11 27078979 27078980 + OSTONOR1_LTR 6440 0.0004 (1/2790) 0 * Os_TE_707076 Os_TE_707076 Chr11 27078975 27078974 - ORSiTERT00100062 5674 0.0004 (1/2785) 0 * Os_TE_707077 Os_TE_707075 Chr11 27078868 27078867 + SEVERIN-2 1952 0.0193 (55/2856) 0 * * Os_TE_707074 Chr11 27078805 27078804 - Cassandra_OS-LTR 764 0.0011 (3/2788) 0 * * Os_TE_707073 Chr11 27078526 27078527 + RIREX_LTR 8828 0.0239 (67/2798) 0 * Os_TE_707072 Os_TE_707072 Chr11 27078522 27078521 - RIREX_LTR 8828 0.0236 (66/2796) 0 * Os_TE_707073 Os_TE_707067 Chr11 27077909 27077746 + ORSgTEMT01701478 178 0.6380 (1785/2798) 1 Intact Os_TE_707066 Os_TE_707066 Chr11 27077746 27077909 - ORSgTEMT01700507 154 0.7246 (1794/2476) 1 Intact Os_TE_707067 Os_TE_707025 Chr11 27035148 27035147 + SEVERIN-2 1952 0.0021 (6/2901) 0 * * Os_TE_707021 Chr11 27034772 27034030 - CLOUD 734 0.1645 (486/2955) 1 Intact * Os_TE_707018 Chr11 27034004 27034003 + RETROSAT4_LTR 13504 0.0011 (2/1819) 0 * * Os_TE_707013 Chr11 27031241 27031242 - TYPEM 227 0.0784 (232/2958) 0 * Os_TE_707012 Os_TE_707012 Chr11 27031240 27031239 - ORSgTEMT02400179 221 0.0791 (235/2971) 0 * Os_TE_707013 Os_TE_707006 Chr11 27030371 27030372 + RIREX_LTR 8828 0.0003 (1/2942) 0 * * Os_TE_706990 Chr11 27028883 27028882 + SEVERIN-2 1952 0.1843 (469/2545) 0 * * Os_TE_706987 Chr11 27027760 27027759 - ORSgTEMT01601493 303 0.0010 (3/2984) 0 * * Os_TE_706986 Chr11 27027209 27027210 - RIREX_LTR 8828 0.0003 (1/2995) 0 * * Os_TE_706981 Chr11 27026610 27026609 - COPI2_LTR 4733 0.0003 (1/2990) 0 * * Os_TE_706977 Chr11 27025454 27025455 - ORSiTERTOOT00333 4719 0.0020 (6/2984) 0 * Os_TE_706976 Os_TE_706976 Chr11 27025451 27025450 + ORSiTERTOOT00333 4719 0.0020 (6/2979) 0 * Os_TE_706977 Os_TE_706967 Chr11 27024854 27024855 - OSTONOR1_LTR 6440 0.0013 (4/2994) 0 * Os_TE_706966 Os_TE_706966 Chr11 27024850 27024849 + OSTONOR1_LTR 6440 0.0013 (4/2998) 0 * Os_TE_706967 Os_TE_706965 Chr11 27023979 27023980 + RPO_OS 1983 0.2373 (698/2941) 0 * * Os_TE_706955 Chr11 27021446 27021447 - ORSgTEMT02400246 177 0.0789 (234/2966) 0 * * Os_TE_706954 Chr11 27021398 27021399 - MUDRN1_OS 764 0.2577 (766/2973) 0 * Os_TE_706953 Os_TE_706953 Chr11 27021390 27021389 - MUDRN1_OS 764 0.2575 (765/2971) 0 * Os_TE_706954 Os_TE_706952 Chr11 27021312 27021311 - DNAUN1_OS 408 0.0030 (9/2978) 0 * * Os_TE_706947 Chr11 27020404 27020405 + ORSgTETNOOT00908 242 0.0183 (54/2955) 0 * Os_TE_706946 Os_TE_706946 Chr11 27020402 27020401 - ORSgTETNOOT00908 242 0.0176 (51/2893) 0 * Os_TE_706947 Os_TE_706944 Chr11 27019776 27019777 + RIREX_LTR 8828 0.0141 (42/2989) 0 * * Os_TE_706942 Chr11 27019551 27019550 + RPO_OS 1983 0.0037 (11/2983) 0 * * Os_TE_706937 Chr11 27018401 27018400 - ORSiTERTOOT00311 8241 0.0003 (1/2977) 0 * * Os_TE_706936 Chr11 27017718 27017717 + STOWAWAY51_OS 246 0.0509 (151/2966) 0 * * Os_TE_706934 Chr11 27017530 27017531 + ORSiTERTOOT00226 792 0.0003 (1/2968) 0 * * Os_TE_706931 Chr11 27016912 27016911 - RETRO2_LTR 12874 0.0003 (1/2938) 0 * * Os_TE_706929 Chr11 27015667 27015666 - RIRE2_LTR 11306 0.0296 (84/2842) 0 * * Os_TE_706915 Chr11 27008100 27008099 + SEVERIN-2 1952 0.0004 (1/2815) 0 * * Os_TE_706911 Chr11 27006776 27006777 - COPIA2-LTR_OS 6433 0.0161 (46/2862) 0 * Os_TE_706910 Os_TE_706910 Chr11 27006772 27006771 + COPIA2-LTR_OS 6433 0.0154 (44/2858) 0 * Os_TE_706911 Os_TE_706900 Chr11 27005531 27005530 + MERMITE18E 1528 0.0283 (57/2015) 0 * * Os_TE_706891 Chr11 27001208 27001209 - ORSgTEMT02400064 212 0.0009 (1/1073) 0 * * Os_TE_706888 Chr11 27000088 26996591 - SZ-67LTR 1540 0.3508 (871/2483) 1 Intact * Os_TE_706873 Chr11 26990463 26989059 + SZ-45LTR 2474 0.3874 (1065/2749) 1 Intact * Os_TE_706864 Chr11 26987285 26987284 - TRUNCATOR 2918 0.1123 (95/846) 0 * * Os_TE_706862 Chr11 26986816 26986815 - ORSgTEMT00600484 344 0.3012 (802/2663) 0 * * Os_TE_706861 Chr11 26986777 26986778 - MuDR4_OS 7610 0.0018 (2/1088) 0 * Os_TE_706860 Os_TE_706860 Chr11 26986771 26986770 + MuDR4_OS 7610 0.0018 (2/1082) 0 * Os_TE_706861 Os_TE_706859 Chr11 26986678 26986677 + ORSgTEMT01400031 216 0.1274 (186/1460) 0 * * Os_TE_706858 Chr11 26986676 26986677 - ORSgTEMT00901345 248 0.0297 (32/1078) 0 * * Os_TE_706857 Chr11 26985884 26985883 - RETROFIT3_LTR 5391 0.0202 (58/2870) 0 * * Os_TE_706853 Chr11 26983587 26983588 - RIRE2_LTR 11306 0.0538 (81/1506) 0 * Os_TE_706852 Os_TE_706852 Chr11 26983583 26983582 - ORSgTERT00201216 11284 0.0533 (80/1502) 0 * Os_TE_706853 Os_TE_706851 Chr11 26983287 26983288 + STOWAWAY11_OS 292 0.3460 (519/1500) 0 * * Os_TE_706843 Chr11 26980771 26980770 - ORSgTEMT01600639 228 0.4764 (1332/2796) 0 * Os_TE_706842 Os_TE_706842 Chr11 26980768 26980769 - ORSgTEMT01601208 238 0.4916 (1399/2846) 0 * Os_TE_706843 Os_TE_706840 Chr11 26980641 26980642 - F770 284 0.0067 (19/2839) 0 * Os_TE_706839 Os_TE_706839 Chr11 26980639 26980638 + F770 284 0.0068 (19/2797) 0 * Os_TE_706840 Os_TE_706838 Chr11 26980498 26980497 + ENSPM4_OS 11610 0.0021 (6/2899) 0 * * Os_TE_706837 Chr11 26979926 26979925 - SINE03_OS 360 0.0032 (8/2535) 0 * * Os_TE_706823 Chr11 26975664 26975665 + COPI2_LTR 4733 0.0276 (82/2975) 0 * Os_TE_706822 Os_TE_706822 Chr11 26975659 26975658 - COPI2_LTR 4733 0.0262 (78/2972) 0 * Os_TE_706823 Os_TE_706819 Chr11 26974318 26974319 + SEVERIN-2 1952 0.0007 (2/2836) 0 * * Os_TE_706816 Chr11 26972937 26972699 - ORSgTEMT01601696 238 0.4456 (1306/2931) 1 Intact Os_TE_706815 Os_TE_706815 Chr11 26972699 26972937 - ORSgTEMT01601432 239 0.4454 (1310/2941) 1 Intact Os_TE_706816 Os_TE_706814 Chr11 26972623 26968715 + RETROSAT4_LTR 13504 0.0749 (220/2938) 1 Solo_LTR Os_TE_706809 Os_TE_706809 Chr11 26968715 26972623 - SZ-35LTR 3853 0.0989 (272/2751) 1 Intact Os_TE_706814 Os_TE_706806 Chr11 26968639 26968640 + SZ-62LTR 3649 0.0007 (1/1399) 0 * Os_TE_706805 Os_TE_706805 Chr11 26968635 26968634 - SZ-62LTR 3649 0.0003 (1/2980) 0 * Os_TE_706806 Os_TE_706803 Chr11 26968601 26968600 - RETROSAT2LTRA 3112 0.0118 (35/2960) 0 * * Os_TE_706800 Chr11 26967328 26967329 - STOWAWAY50_OS 174 0.0890 (256/2875) 0 * * Os_TE_706793 Chr11 26966725 26966726 - ORSgTEMT00501730 148 0.0232 (69/2973) 0 * * Os_TE_706791 Chr11 26966621 26966620 + AMYLTP 383 0.0004 (1/2746) 0 * * Os_TE_706789 Chr11 26966525 26966524 + DITTO3 260 0.0310 (84/2708) 0 * Os_TE_706787 Os_TE_706787 Chr11 26966487 26966488 + DITTO3 260 0.0262 (77/2935) 0 * Os_TE_706789 Os_TE_706775 Chr11 26965964 26965965 - RETRO2_LTR 12874 0.0016 (2/1225) 0 * * Os_TE_706772 Chr11 26965938 26966330 - ORSgTEMT01701882 154 0.8191 (1277/1559) 1 Intact * Os_TE_706771 Chr11 26965918 26965919 + ORSgTEMT00901309 238 0.0285 (79/2776) 0 * * Os_TE_706770 Chr11 26965863 26965864 + ORSgTETNOOT00032 218 0.0007 (2/2704) 0 * * Os_TE_706769 Chr11 26965816 26965815 + STOWAWAY51_OS 246 0.0022 (6/2763) 0 * * Os_TE_706767 Chr11 26965750 26965751 + ORSgTEMT00502327 143 0.4817 (1223/2539) 0 * * Os_TE_706766 Chr11 26965747 26965746 + NDNA1TNA_OS 334 0.0073 (18/2464) 0 * * Os_TE_706765 Chr11 26965698 26965697 + NDNA1TNA_OS 334 0.0160 (44/2743) 0 * Os_TE_706764 Os_TE_706764 Chr11 26965685 26965686 - NDNA1TNA_OS 334 0.0157 (44/2811) 0 * Os_TE_706765 Os_TE_706763 Chr11 26965540 26965541 - STOWAWAY9_OS 235 0.0268 (75/2796) 0 * * Os_TE_706762 Chr11 26965315 26965314 - ORSgTEMT01601111 238 0.0011 (3/2815) 0 * Os_TE_706761 Os_TE_706761 Chr11 26965312 26965313 - ORSgTEMT01600374 210 0.0011 (3/2821) 0 * Os_TE_706762 Os_TE_706758 Chr11 26965062 26965063 - ORSiTETNOOT00134 607 0.0316 (86/2722) 0 * Os_TE_706757 Os_TE_706757 Chr11 26965055 26965054 + TWIF 586 0.0297 (83/2795) 0 * Os_TE_706758 Os_TE_706756 Chr11 26964965 26964966 + ORSgTETNOOT02316 263 0.0169 (48/2832) 0 * Os_TE_706755 Os_TE_706755 Chr11 26964963 26964962 - INDITTO 263 0.0159 (45/2822) 0 * Os_TE_706756 Os_TE_706754 Chr11 26964951 26964950 + F524 291 0.0305 (85/2788) 0 * * Os_TE_706743 Chr11 26964352 26964351 + OLO24 345 0.0469 (118/2517) 0 * * Os_TE_706742 Chr11 26964335 26964336 - MUDR_N7_OS 1283 0.2555 (726/2841) 0 * Os_TE_706741 Os_TE_706741 Chr11 26964327 26964326 + MUDR_N7_OS 1283 0.2626 (732/2787) 0 * Os_TE_706742 Os_TE_706740 Chr11 26964115 26964114 + MuDR3_OS 8604 0.0278 (79/2840) 0 * * Os_TE_706732 Chr11 26963503 26963752 - ORSgTETNOOT02565 240 0.8701 (2464/2832) 1 Intact * Os_TE_706731 Chr11 26963436 26963437 + COPIA2-LTR_OS 6433 0.0014 (4/2836) 0 * Os_TE_706730 Os_TE_706730 Chr11 26963432 26963431 - COPIA2-LTR_OS 6433 0.0014 (4/2879) 0 * Os_TE_706731 Os_TE_706729 Chr11 26963148 26963149 - ORSgTETN00200001 10994 0.0016 (4/2486) 0 * Os_TE_706728 Os_TE_706728 Chr11 26963146 26963145 + SPMLIKE 10989 0.0018 (5/2840) 0 * Os_TE_706729 Os_TE_706727 Chr11 26963140 26963139 + ORSgTEMT01601934 207 0.0021 (6/2837) 0 * * Os_TE_706725 Chr11 26963080 26963081 - NDNA1TNA_OS 334 0.0266 (77/2895) 0 * Os_TE_706724 Os_TE_706724 Chr11 26963078 26963077 + NDNA1TNA_OS 334 0.0299 (79/2646) 0 * Os_TE_706725 Os_TE_706723 Chr11 26962935 26962936 + RIREX_LTR 8828 0.0087 (26/2981) 0 * Os_TE_706722 Os_TE_706722 Chr11 26962931 26962930 - RIREX_LTR 8828 0.0098 (26/2646) 0 * Os_TE_706723 Os_TE_706711 Chr11 26960393 26960394 + COPIA2-LTR_OS 6433 0.0004 (1/2684) 0 * * Os_TE_706708 Chr11 26958655 26958654 + ORSgTETNOOT00072 203 0.0004 (1/2562) 0 * * Os_TE_706706 Chr11 26955319 26955318 - TRUNCATOR 2918 0.0116 (30/2590) 0 * * Os_TE_706702 Chr11 26955196 26955197 - ORSiTERTOOT00329 5144 0.0042 (11/2631) 0 * * Os_TE_706695 Chr11 26952733 26952732 - TYPEM 227 0.0045 (12/2653) 0 * * Os_TE_706694 Chr11 26952678 26952677 + SZ-55_LTR 10318 0.0317 (84/2647) 0 * * Os_TE_706689 Chr11 26951301 26951302 - RETRO1_LTR 8314 0.0106 (28/2641) 0 * Os_TE_706688 Os_TE_706688 Chr11 26951297 26951296 + RETRO1_LTR 8314 0.0102 (27/2642) 0 * Os_TE_706689 Os_TE_706687 Chr11 26951030 26951031 + MDR2 6967 0.0045 (12/2648) 0 * * Os_TE_706684 Chr11 26949095 26949094 + ORSgTETNOOT00221 261 0.0012 (3/2581) 0 * * Os_TE_706681 Chr11 26947538 26947539 + COPIA2-LTR_OS 6433 0.0147 (42/2861) 0 * Os_TE_706680 Os_TE_706680 Chr11 26947534 26947533 - COPIA2-LTR_OS 6433 0.0165 (48/2905) 0 * Os_TE_706681 Os_TE_706675 Chr11 26947252 26947251 + SZ-67LTR 1540 0.0265 (78/2938) 0 * * Os_TE_706672 Chr11 26946993 26946994 + RIREX_LTR 8828 0.0003 (1/2946) 0 * Os_TE_706671 Os_TE_706671 Chr11 26946989 26946988 - RIREX_LTR 8828 0.0003 (1/2939) 0 * Os_TE_706672 Os_TE_706670 Chr11 26946825 26946824 + ORSgTETNOOT00707 140 0.0153 (45/2935) 0 * Os_TE_706669 Os_TE_706669 Chr11 26946807 26946808 + ORSgTEMT00502327 143 0.0145 (43/2965) 0 * Os_TE_706670 Os_TE_706664 Chr11 26942375 26942376 + ORSgTEMT00300064 397 0.1003 (269/2682) 0 * * Os_TE_706661 Chr11 26942061 26941812 + ORSgTETNOOT01834 251 0.8534 (2060/2414) 1 Intact Os_TE_706660 Os_TE_706660 Chr11 26941808 26942011 - TOURIST-XI 219 0.8377 (2091/2496) 1 Intact Os_TE_706661 Os_TE_706656 Chr11 26941427 26941428 - SZ-9LTR 965 0.0208 (44/2116) 0 * Os_TE_706655 Os_TE_706655 Chr11 26941423 26941422 - SZ-9LTR 965 0.0213 (45/2116) 0 * Os_TE_706656 Os_TE_706654 Chr11 26940920 26940921 - RIREX_LTR 8828 0.1306 (276/2113) 0 * * Os_TE_706633 Chr11 26935280 26935281 - RIREX_LTR 8828 0.0667 (156/2339) 0 * Os_TE_706632 Os_TE_706632 Chr11 26935276 26935275 + RIREX_LTR 8828 0.0662 (155/2340) 0 * Os_TE_706633 Os_TE_706631 Chr11 26935240 26935239 + ORSgTEMT00300064 397 0.1029 (241/2342) 0 * * Os_TE_706609 Chr11 26923924 26923923 - ENSPM_OS 9843 0.3663 (836/2282) 0 * * Os_TE_706605 Chr11 26923053 26923052 + RETRO1_LTR 8314 0.0793 (163/2055) 0 * * Os_TE_706598 Chr11 26921357 26921358 + ORSgTEMT01602181 239 0.1069 (277/2590) 0 * * Os_TE_706596 Chr11 26921233 26921232 - TYPEU1 380 0.0031 (8/2560) 0 * * Os_TE_706594 Chr11 26921051 26921052 - SZ-52_LTR 13107 0.1177 (294/2498) 0 * * Os_TE_706589 Chr11 26920303 26920304 - MERMITE18D 1491 0.1143 (263/2300) 0 * * Os_TE_706587 Chr11 26920217 26920216 + ORSgTEMT01601122 212 0.7432 (1673/2251) 0 * * Os_TE_706582 Chr11 26917030 26917031 + SEVERIN-2 1952 0.0012 (3/2513) 0 * * Os_TE_706577 Chr11 26916318 26916319 - SZ-48LTR 3632 0.0006 (1/1735) 0 * * Os_TE_706576 Chr11 26916294 26916293 + ORSgTEMT00101674 340 0.1204 (289/2400) 0 * * Os_TE_706573 Chr11 26915682 26904532 + SZ-48LTR 3632 0.6610 (234/354) 1 Intact Os_TE_706571 Os_TE_706571 Chr11 26904532 26915682 - SZ-48LTR 3632 0.6667 (236/354) 1 Intact Os_TE_706573 Os_TE_706560 Chr11 26897595 26896179 + TESSBIG 4057 0.8367 (292/349) 1 Intact Os_TE_706559 Os_TE_706559 Chr11 26896179 26897595 - TESSBIG 4057 0.7837 (308/393) 1 Intact Os_TE_706560 Os_TE_706558 Chr11 26895868 26894784 + RETRO2_LTR 12874 0.7484 (235/314) 1 Solo_LTR Os_TE_706556 Os_TE_706556 Chr11 26894784 26895868 - RETRO2_LTR 12874 0.7532 (235/312) 1 Solo_LTR Os_TE_706558 Os_TE_706554 Chr11 26894251 26882773 - ORSgTETN00200001 10994 0.5764 (215/373) 1 Intact * Os_TE_706550 Chr11 26880852 26881154 - ORSgTEMT01601493 303 0.7778 (301/387) 1 Intact * Os_TE_706531 Chr11 26873313 26873312 - SINE03_OS 360 0.0405 (72/1779) 0 * * Os_TE_706522 Chr11 26864009 26863395 - DS-RICE2N 613 0.2368 (382/1613) 1 Intact Os_TE_706521 Os_TE_706521 Chr11 26863395 26864009 + DS-RICE2N 613 0.2414 (392/1624) 1 Intact Os_TE_706522 Os_TE_706518 Chr11 26857398 26863039 + SPMLIKE 10989 0.2428 (398/1639) 1 Intact * Os_TE_706492 Chr11 26849606 26849605 + COPI2_LTR 4733 0.0005 (1/2022) 0 * * Os_TE_706487 Chr11 26845081 26849442 - SZ-48LTR 3632 0.2000 (405/2025) 1 Intact * Os_TE_706479 Chr11 26843414 26843415 + ENSPM6_OS 9815 0.1285 (295/2295) 0 * * Os_TE_706467 Chr11 26840120 26840121 + RIRE2_LTR 11306 0.0032 (7/2198) 0 * Os_TE_706466 Os_TE_706466 Chr11 26840116 26840115 - RIRE2_LTR 11306 0.0036 (8/2203) 0 * Os_TE_706467 Os_TE_706465 Chr11 26839865 26839864 - ENSPM4_OS 11610 0.0750 (172/2294) 0 * * Os_TE_706445 Chr11 26833983 26833984 - SZ-35LTR 3853 0.1314 (306/2329) 0 * * Os_TE_706425 Chr11 26831368 26831367 - RPO_OS 1983 0.0029 (7/2379) 0 * Os_TE_706424 Os_TE_706424 Chr11 26831367 26831368 + RPO_OS 1983 0.0029 (7/2386) 0 * Os_TE_706425 Os_TE_706417 Chr11 26829515 26829516 + ORSgTEMT01600726 235 0.1237 (292/2361) 0 * * Os_TE_706412 Chr11 26828416 26828417 - ORSiTERT00200154 9386 0.0106 (25/2352) 0 * Os_TE_706411 Os_TE_706411 Chr11 26828410 26828409 + TRUNCATOR 2918 0.0119 (28/2351) 0 * Os_TE_706412 Os_TE_706403 Chr11 26827519 26827520 - RETROSAT2LTR 12796 0.0004 (1/2333) 0 * * Os_TE_706395 Chr11 26826032 26826031 + ORSiCMCM00100019 2717 0.0063 (15/2375) 0 * * Os_TE_706393 Chr11 26825155 26825156 - SZ-40LTR 2465 0.0025 (6/2376) 0 * * Os_TE_706387 Chr11 26823118 26823119 - ORSiTERT00200154 9386 0.0114 (27/2376) 0 * * Os_TE_706375 Chr11 26820470 26820469 - ORSgTEMT00502171 134 0.0004 (1/2369) 0 * * Os_TE_706371 Chr11 26819878 26819879 - SZ-22_LTR 4403 0.0038 (9/2359) 0 * Os_TE_706370 Os_TE_706370 Chr11 26819874 26819873 + ORSiTERTOOT00226 792 0.0038 (9/2360) 0 * Os_TE_706371 Os_TE_706344 Chr11 26813164 26813165 + TRUNCATOR2_LTR 2904 0.0145 (37/2555) 0 * * Os_TE_706338 Chr11 26810371 26810372 - RIRE2_LTR 11306 0.0218 (52/2386) 0 * Os_TE_706337 Os_TE_706337 Chr11 26810367 26810366 + RIRE2_LTR 11306 0.0214 (51/2379) 0 * Os_TE_706338 Os_TE_706335 Chr11 26808629 26808628 + SEVERIN-2 1952 0.0047 (11/2342) 0 * * Os_TE_706333 Chr11 26807392 26807393 - CLOUD-6 508 0.1534 (350/2282) 0 * Os_TE_706332 Os_TE_706332 Chr11 26807384 26807383 - CLOUD-6 508 0.1526 (348/2280) 0 * Os_TE_706333 Os_TE_706302 Chr11 26798816 26798815 + ORSiTERTOOT00296 5553 0.0017 (4/2347) 0 * * Os_TE_706266 Chr11 26785394 26785395 + NDNA1TNA_OS 334 0.0004 (1/2554) 0 * * Os_TE_706265 Chr11 26784852 26784851 - RIRE2_LTR 11306 0.0008 (2/2519) 0 * * Os_TE_706258 Chr11 26777971 26777970 + SC-7_LTR 4431 0.1618 (206/1273) 0 * * Os_TE_706247 Chr11 26776596 26776597 + MDM2 312 0.0019 (2/1052) 0 * * Os_TE_706245 Chr11 26776536 26776537 + RETRO2A_LTR 12895 0.0106 (30/2827) 0 * * Os_TE_706239 Chr11 26775928 26775929 - ORSgTEMT01800105 452 0.1496 (422/2821) 0 * * Os_TE_706238 Chr11 26775855 26775856 - STOWAWAY8_OS 259 0.6441 (1797/2790) 0 * Os_TE_706237 Os_TE_706237 Chr11 26775854 26775853 + STOWAWAY8_OS 259 0.6132 (1785/2911) 0 * Os_TE_706238 Os_TE_706233 Chr11 26775396 26775251 + TNR2A 152 0.1436 (422/2938) 1 Intact Os_TE_706232 Os_TE_706232 Chr11 26775250 26775394 - TNR2A 152 0.1387 (399/2877) 1 Intact Os_TE_706233 Os_TE_706231 Chr11 26773798 26773799 - ORSgTETN00200001 10994 0.1232 (76/617) 0 * Os_TE_706230 Os_TE_706230 Chr11 26773796 26773795 + SPMLIKE 10989 0.1304 (81/621) 0 * Os_TE_706231 Os_TE_706229 Chr11 26773728 26773388 + ORSgTEMT00101674 340 0.6839 (424/620) 1 Intact Os_TE_706228 Os_TE_706228 Chr11 26773391 26773725 + NDNA1TNA_OS 334 0.7124 (426/598) 1 Intact Os_TE_706229 Os_TE_706227 Chr11 26772955 26772756 + TAMI2 254 0.6948 (437/629) 1 Intact * Os_TE_706215 Chr11 26770288 26770287 + SZ-67LTR 1540 0.0198 (13/656) 0 * * Os_TE_706197 Chr11 26761889 26761746 - ORSgTEMT01701302 154 0.6910 (436/631) 1 Intact Os_TE_706193 Os_TE_706193 Chr11 26761748 26761887 + STOWAWAY1_OS 149 0.3017 (429/1422) 1 Intact Os_TE_706197 Os_TE_706189 Chr11 26761307 26761308 + ORSgTEMT01602188 240 0.3037 (181/596) 0 * * Os_TE_706170 Chr11 26751207 26751206 - RIREX_LTR 8828 0.0146 (34/2323) 0 * * Os_TE_706151 Chr11 26745378 26745531 - ORSgTEMT01701182 145 0.5458 (435/797) 1 Intact * Os_TE_706144 Chr11 26741634 26740927 + BAJIELTR 4500 0.3994 (433/1084) 1 Solo_LTR Os_TE_706141 Os_TE_706141 Chr11 26740930 26741634 - BAJIELTR 4500 0.7793 (452/580) 1 Solo_LTR Os_TE_706144 Os_TE_706118 Chr11 26724649 26724650 - SZ-55_LTR 10318 0.0149 (8/536) 0 * Os_TE_706117 Os_TE_706117 Chr11 26724645 26724644 + SZ-55_LTR 10318 0.0168 (9/535) 0 * Os_TE_706118 Os_TE_706116 Chr11 26724128 26724127 - RETRO1_LTR 8314 0.0131 (8/610) 0 * Os_TE_706115 Os_TE_706115 Chr11 26724118 26724119 + RETRO1_LTR 8314 0.0100 (6/601) 0 * Os_TE_706116 Os_TE_706114 Chr11 26724107 26724108 + RIREX_LTR 8828 0.0099 (6/605) 0 * Os_TE_706113 Os_TE_706113 Chr11 26724103 26724102 - RIREX_LTR 8828 0.0101 (6/596) 0 * Os_TE_706114 Os_TE_706094 Chr11 26720157 26719886 + STOWAWAY11_OS 292 0.8793 (408/464) 1 Intact * Os_TE_706089 Chr11 26719711 26719712 + RIRE2_LTR 11306 0.0101 (6/597) 0 * Os_TE_706088 Os_TE_706088 Chr11 26719707 26719706 - RIRE2_LTR 11306 0.0112 (6/535) 0 * Os_TE_706089 Os_TE_706082 Chr11 26717874 26716375 + SZ-19LTR 1513 0.8940 (548/613) 1 Intact * Os_TE_706072 Chr11 26715931 26715932 + RIREX_LTR 8828 0.1111 (70/630) 0 * Os_TE_706071 Os_TE_706071 Chr11 26715927 26715926 - RIREX_LTR 8828 0.1106 (69/624) 0 * Os_TE_706072 Os_TE_706066 Chr11 26714358 26714359 + OSTE20 496 0.1514 (81/535) 0 * Os_TE_706065 Os_TE_706065 Chr11 26714354 26714353 + OSTE20 496 0.1458 (78/535) 0 * Os_TE_706066 Os_TE_706063 Chr11 26713459 26713458 - ORSiTERTOOT00183 3603 0.0016 (1/637) 0 * * Os_TE_706043 Chr11 26706267 26706386 - ORSgTEMT00502214 125 0.8876 (537/605) 1 Intact * Os_TE_706035 Chr11 26697154 26697155 + RIREX_LTR 8828 0.0063 (4/635) 0 * Os_TE_706034 Os_TE_706034 Chr11 26697150 26697149 - RIREX_LTR 8828 0.0032 (2/628) 0 * Os_TE_706035 Os_TE_706032 Chr11 26696363 26696468 + STOWAWAY1_OS 149 0.8863 (530/598) 1 Intact * Os_TE_706030 Chr11 26681397 26681141 - STOWAWAY41_OS 264 0.7388 (591/800) 1 Intact * Os_TE_706027 Chr11 26680739 26680952 - ORSgTEMT02400246 177 0.6057 (550/908) 1 Intact * Os_TE_706026 Chr11 26680342 26680341 + TRUNCATOR 2918 0.0037 (2/545) 0 * Os_TE_706025 Os_TE_706025 Chr11 26680341 26680342 - TRUNCATOR 2918 0.0007 (2/2978) 0 * Os_TE_706026 Os_TE_706011 Chr11 26669758 26669757 + MuDR2_OS 6770 0.0041 (2/490) 0 * * Os_TE_705994 Chr11 26660919 26660920 - RIRE3A_LTR 10580 0.1575 (80/508) 0 * Os_TE_705993 Os_TE_705993 Chr11 26660915 26660914 + ORSiTERTOOT00027 10853 0.1561 (79/506) 0 * Os_TE_705994 Os_TE_705961 Chr11 26633126 26633125 - RETROFIT2_LTR 4774 0.0006 (1/1775) 0 * * Os_TE_705959 Chr11 26633056 26621757 - ORSgTERT00201216 11284 0.2005 (352/1756) 1 Intact * Os_TE_705935 Chr11 26621603 26621604 - ORSgTEMT00100582 334 0.0037 (2/545) 0 * Os_TE_705934 Os_TE_705934 Chr11 26621591 26621590 - ORSgTEMT00900145 249 0.7215 (1373/1903) 0 * Os_TE_705935 Os_TE_705928 Chr11 26620103 26620104 + NDNA1TNA_OS 334 0.0052 (10/1905) 0 * Os_TE_705927 Os_TE_705927 Chr11 26620101 26620100 - NDNA1TNA_OS 334 0.0048 (9/1864) 0 * Os_TE_705928 Os_TE_705925 Chr11 26618350 26618351 + ORSgTEMT01601809 239 0.0011 (2/1860) 0 * * Os_TE_705923 Chr11 26618221 26618220 - ORSgTETN00200001 10994 0.0439 (83/1889) 0 * * Os_TE_705921 Chr11 26617937 26617936 - ORSgTEMT00501204 149 0.7241 (1378/1903) 0 * * Os_TE_705919 Chr11 26617262 26617263 + SPMLIKE 10989 0.0005 (1/1990) 0 * Os_TE_705918 Os_TE_705918 Chr11 26617261 26617260 - ORSgTETN00200001 10994 0.0005 (1/1985) 0 * Os_TE_705919 Os_TE_705916 Chr11 26616830 26616831 - COPIA2-LTR_OS 6433 0.0010 (2/1966) 0 * * Os_TE_705915 Chr11 26616663 26616510 + ORSgTEMT01701591 154 0.2467 (473/1917) 1 Intact * Os_TE_705909 Chr11 26614753 26614752 - UNIQUE 158 0.0020 (4/1964) 0 * * Os_TE_705907 Chr11 26614337 26614336 - OSTE28 298 0.0004 (1/2248) 0 * * Os_TE_705905 Chr11 26613990 26613989 + TRSA_OS 353 0.0447 (87/1948) 0 * * Os_TE_705904 Chr11 26613696 26613697 + ORSgTEMT01601122 212 0.0010 (2/1972) 0 * * Os_TE_705900 Chr11 26611911 26611912 + RPO_OS 1983 0.0005 (1/1930) 0 * * Os_TE_705895 Chr11 26611213 26611214 - SZ-48LTR 3632 0.0057 (11/1916) 0 * * Os_TE_705893 Chr11 26611168 26611169 - ORSgTEMT01601208 238 0.0005 (1/1852) 0 * * Os_TE_705891 Chr11 26611078 26611079 - RIREX_LTR 8828 0.0022 (4/1796) 0 * Os_TE_705890 Os_TE_705890 Chr11 26611076 26611075 + RIREX_LTR 8828 0.0026 (5/1924) 0 * Os_TE_705891 Os_TE_705889 Chr11 26611072 26611073 + RETROSAT4_LTR 13504 0.0519 (98/1889) 0 * Os_TE_705888 Os_TE_705888 Chr11 26611068 26611067 - SZ-35LTR 3853 0.0550 (104/1891) 0 * Os_TE_705889 Os_TE_705887 Chr11 26610986 26610987 - RIREX_LTR 8828 0.0064 (12/1879) 0 * Os_TE_705886 Os_TE_705886 Chr11 26610982 26610981 + RIREX_LTR 8828 0.0063 (12/1906) 0 * Os_TE_705887 Os_TE_705885 Chr11 26610823 26610824 + SPMLIKE 10989 0.0922 (177/1920) 0 * Os_TE_705884 Os_TE_705884 Chr11 26610821 26610820 - ORSgTETN00200001 10994 0.0033 (3/912) 0 * Os_TE_705885 Os_TE_705878 Chr11 26609687 26609688 + SEVERIN-2 1952 0.0012 (2/1684) 0 * Os_TE_705877 Os_TE_705877 Chr11 26609684 26609683 - SEVERIN-2 1952 0.0010 (2/1951) 0 * Os_TE_705878 Os_TE_705876 Chr11 26609611 26609612 - CACTA-M 1129 0.0803 (157/1956) 0 * * Os_TE_705875 Chr11 26609384 26609385 - CACTA-M 1129 0.0017 (1/583) 0 * Os_TE_705874 Os_TE_705874 Chr11 26609381 26609380 + CACTA-I 1124 0.0017 (1/590) 0 * Os_TE_705875 Os_TE_705873 Chr11 26609345 26609346 - EnSpm-10_OS 11265 0.0005 (1/1983) 0 * * Os_TE_705870 Chr11 26607430 26607431 + CACTA-I 1124 0.0533 (98/1839) 0 * Os_TE_705869 Os_TE_705869 Chr11 26607428 26607427 - CACTA-M 1129 0.0586 (110/1878) 0 * Os_TE_705870 Os_TE_705867 Chr11 26607338 26607339 - ORSgTEMT00100854 331 0.7063 (1325/1876) 0 * * Os_TE_705865 Chr11 26607200 26606964 - ORSgTEMT01602413 239 0.3144 (570/1813) 1 Intact * Os_TE_705860 Chr11 26606768 26606767 - ORSgTETNOOT01930 140 0.0005 (1/1917) 0 * Os_TE_705859 Os_TE_705859 Chr11 26606767 26606768 + ORSgTEMT00500201 140 0.0005 (1/1893) 0 * Os_TE_705860 Os_TE_705855 Chr11 26604116 26604437 - OLO24 345 0.5531 (589/1065) 1 Intact * Os_TE_705830 Chr11 26585962 26585961 - Cassandra_OS-LTR 764 0.0014 (4/2952) 0 * * Os_TE_705826 Chr11 26585224 26585223 - ORSgTEMT02400246 177 0.8073 (2329/2885) 0 * * Os_TE_705821 Chr11 26584695 26584694 + ORSgTEMT01602181 239 0.0003 (1/2995) 0 * * Os_TE_705809 Chr11 26581614 26581613 + ORSgTEMT01602413 239 0.0009 (1/1074) 0 * * Os_TE_705799 Chr11 26578584 26578583 - SEVERIN-2 1952 0.0011 (1/934) 0 * * Os_TE_705794 Chr11 26574321 26574322 - SZ-25LTR 330 0.0007 (2/2942) 0 * Os_TE_705793 Os_TE_705793 Chr11 26574318 26574317 + ORSiTERT00100071 4657 0.0007 (2/2966) 0 * Os_TE_705794 Os_TE_705789 Chr11 26573472 26573471 + COPI2_LTR 4733 0.0037 (11/2971) 0 * * Os_TE_705786 Chr11 26572149 26572148 - STOWAWAY51_OS 246 0.0027 (8/2999) 0 * Os_TE_705785 Os_TE_705785 Chr11 26572146 26572147 - STOWAWAY51_OS 246 0.0027 (8/2959) 0 * Os_TE_705786 Os_TE_705782 Chr11 26571521 26571520 - ORSgTETN00200001 10994 0.0512 (153/2988) 0 * Os_TE_705781 Os_TE_705781 Chr11 26571520 26571521 + CACTA-B 1103 0.0549 (164/2987) 0 * Os_TE_705782 Os_TE_705770 Chr11 26569167 26569168 + OSTONOR1_LTR 6440 0.0004 (1/2691) 0 * * Os_TE_705768 Chr11 26568418 26568419 - RIRE2_LTR 11306 0.0033 (10/2994) 0 * Os_TE_705767 Os_TE_705767 Chr11 26568414 26568413 - ORSgTERT00201216 11284 0.0033 (10/2995) 0 * Os_TE_705768 Os_TE_705766 Chr11 26568097 26568098 - NDNA1TNA_OS 334 0.0003 (1/2996) 0 * Os_TE_705765 Os_TE_705765 Chr11 26568095 26568094 + NDNA1TNA_OS 334 0.0003 (1/2995) 0 * Os_TE_705766 Os_TE_705746 Chr11 26562161 26562162 + ORSiTERTOOT00296 5553 0.0013 (4/2994) 0 * Os_TE_705745 Os_TE_705745 Chr11 26562157 26562156 - SC-3_LTR 5748 0.0013 (4/2993) 0 * Os_TE_705746 Os_TE_705743 Chr11 26558710 26558709 - OSTE15 1168 0.0003 (1/2982) 0 * * Os_TE_705736 Chr11 26556111 26556112 + ORSiTERTOOT00296 5553 0.0003 (1/2992) 0 * Os_TE_705735 Os_TE_705735 Chr11 26556107 26556106 - SC-3_LTR 5748 0.0003 (1/2989) 0 * Os_TE_705736 Os_TE_705726 Chr11 26549997 26549996 + ORSgTERT00200139 1329 0.0004 (1/2846) 0 * * Os_TE_705716 Chr11 26542546 26542547 - SZ-62LTR 3649 0.1289 (317/2459) 0 * * Os_TE_705709 Chr11 26541314 26541315 + TRUNCATOR2_LTR 2904 0.0258 (77/2989) 0 * Os_TE_705708 Os_TE_705708 Chr11 26541310 26541309 - TRUNCATOR2_LTR 2904 0.0265 (79/2985) 0 * Os_TE_705709 Os_TE_705707 Chr11 26541076 26541077 + RIREX_LTR 8828 0.0003 (1/2994) 0 * Os_TE_705706 Os_TE_705706 Chr11 26541072 26541071 - RIREX_LTR 8828 0.0003 (1/2987) 0 * Os_TE_705707 Os_TE_705680 Chr11 26526401 26526400 - ORSgTEMT01701266 154 0.2035 (609/2993) 0 * Os_TE_705679 Os_TE_705679 Chr11 26526398 26526399 + ORSgTEMT01701591 154 0.2063 (618/2996) 0 * Os_TE_705680 Os_TE_705677 Chr11 26525643 26525642 + ORSiTERTOOT00034 791 0.0047 (14/2987) 0 * Os_TE_705676 Os_TE_705676 Chr11 26525642 26525643 - SZ-22_LTR 4403 0.0043 (13/2996) 0 * Os_TE_705677 Os_TE_705668 Chr11 26525430 26525429 + ORSgTETNOOT00908 242 0.0222 (66/2975) 0 * * Os_TE_705664 Chr11 26524347 26524346 + SZ-67LTR 1540 0.1103 (296/2684) 0 * * Os_TE_705661 Chr11 26522787 26522788 - OSTONOR1_LTR 6440 0.0005 (1/1988) 0 * Os_TE_705660 Os_TE_705660 Chr11 26522783 26522782 + OSTONOR1_LTR 6440 0.0005 (1/1987) 0 * Os_TE_705661 Os_TE_705657 Chr11 26522058 26522057 + TRUNCATOR 2918 0.0166 (33/1991) 0 * * Os_TE_705639 Chr11 26518103 26518104 - RETRO1_LTR 8314 0.0039 (7/1777) 0 * * Os_TE_705633 Chr11 26516998 26516997 + STOWAWAY51_OS 246 0.0003 (1/2991) 0 * Os_TE_705632 Os_TE_705632 Chr11 26516992 26516993 - STOWAWAY51_OS 246 0.0003 (1/2992) 0 * Os_TE_705633 Os_TE_705624 Chr11 26510263 26510262 + ORSgTETNOOT00908 242 0.0034 (5/1478) 0 * * Os_TE_705602 Chr11 26499875 26499874 + RPO_OS 1983 0.0020 (6/2961) 0 * Os_TE_705601 Os_TE_705601 Chr11 26499874 26499875 - RPO_OS 1983 0.0020 (6/2955) 0 * Os_TE_705602 Os_TE_705600 Chr11 26499649 26499650 - RETROSAT4_LTR 13504 0.0003 (1/2920) 0 * * Os_TE_705599 Chr11 26499592 26499593 - TRUNCATOR2_LTR 2904 0.0311 (90/2895) 0 * * Os_TE_705592 Chr11 26498320 26498319 + ORSgTEMT00101341 314 0.0666 (198/2973) 0 * * Os_TE_705581 Chr11 26496051 26492443 - ORSiTETNOOT00200 3563 0.0171 (40/2340) -1 Intact Os_TE_705580 Os_TE_705580 Chr11 26492442 26496049 + TWIF 586 0.0854 (222/2599) 1 Intact Os_TE_705581 Os_TE_705554 Chr11 26484598 26484599 - ORSgTEMT00501568 147 0.0011 (3/2781) 0 * * Os_TE_705550 Chr11 26482855 26482856 - SZ-40LTR 2465 0.0004 (1/2652) 0 * Os_TE_705549 Os_TE_705549 Chr11 26482851 26482850 + SZ-40LTR 2465 0.0004 (1/2633) 0 * Os_TE_705550 Os_TE_705548 Chr11 26482407 26482408 + RIRE5-LTR_OS 6427 0.2346 (487/2076) 0 * * Os_TE_705545 Chr11 26481598 26481599 - COPIA2-LTR_OS 6433 0.0007 (2/2779) 0 * Os_TE_705544 Os_TE_705544 Chr11 26481594 26481593 + COPIA2-LTR_OS 6433 0.0007 (2/2794) 0 * Os_TE_705545 Os_TE_705538 Chr11 26479791 26479792 + ORSgTETNOOT00908 242 0.0022 (5/2293) 0 * Os_TE_705537 Os_TE_705537 Chr11 26479789 26479788 + ORSgTETNOOT02019 240 0.0017 (4/2303) 0 * Os_TE_705538 Os_TE_705534 Chr11 26478830 26478831 + RETRO2_LTR 12874 0.0139 (32/2308) 0 * * Os_TE_705509 Chr11 26475522 26475523 + SPMLIKE 10989 0.0200 (56/2806) 0 * Os_TE_705508 Os_TE_705508 Chr11 26475520 26475519 - ORSgTETN00200001 10994 0.0199 (56/2808) 0 * Os_TE_705509 Os_TE_705506 Chr11 26475032 26475033 - SZ-62LTR 3649 0.0018 (5/2785) 0 * Os_TE_705505 Os_TE_705505 Chr11 26475028 26475027 + SZ-62LTR 3649 0.0014 (4/2785) 0 * Os_TE_705506 Os_TE_705458 Chr11 26454569 26454570 - SZ-35LTR 3853 0.0037 (11/2947) 0 * Os_TE_705457 Os_TE_705457 Chr11 26454565 26454564 + RETROSAT4_LTR 13504 0.0042 (12/2888) 0 * Os_TE_705458 Os_TE_705453 Chr11 26452727 26452728 + ORSgTEMT01600756 231 0.0182 (54/2961) 0 * Os_TE_705452 Os_TE_705452 Chr11 26452723 26452722 - ORSgTEMT01601696 238 0.0209 (62/2964) 0 * Os_TE_705453 Os_TE_705451 Chr11 26452720 26452721 - ORSgTEMT01601493 303 0.0193 (57/2956) 0 * * Os_TE_705450 Chr11 26452603 26452604 - OLO24 345 0.0003 (1/2970) 0 * Os_TE_705449 Os_TE_705449 Chr11 26452601 26452600 + OLO24 345 0.0003 (1/2977) 0 * Os_TE_705450 Os_TE_705441 Chr11 26452047 26452048 + ORSgTETNOOT00908 242 0.0041 (12/2960) 0 * * Os_TE_705420 Chr11 26446624 26446623 + TRUNCATOR 2918 0.0010 (3/2940) 0 * Os_TE_705419 Os_TE_705419 Chr11 26446620 26446621 - TRUNCATOR 2918 0.0010 (3/2916) 0 * Os_TE_705420 Os_TE_705414 Chr11 26443984 26443985 + TOS17LTR 138 0.0672 (201/2990) 0 * * Os_TE_705412 Chr11 26443846 26443847 - RETROSAT4_LTR 13504 0.0010 (3/2980) 0 * Os_TE_705411 Os_TE_705411 Chr11 26443842 26443841 + RETROSAT4_LTR 13504 0.0007 (2/2980) 0 * Os_TE_705412 Os_TE_705410 Chr11 26442449 26442450 - TYPEU1 380 0.0013 (2/1533) 0 * Os_TE_705409 Os_TE_705409 Chr11 26442440 26442439 + TYPEU1 380 0.0010 (1/1035) 0 * Os_TE_705410 Os_TE_705407 Chr11 26441866 26441865 + CACTA-H 1152 0.0031 (9/2876) 0 * Os_TE_705406 Os_TE_705406 Chr11 26441865 26441866 + ORSgTETN00200005 1121 0.0031 (9/2899) 0 * Os_TE_705407 Os_TE_705404 Chr11 26441453 26441454 + RETROSAT3_LTR 11537 0.0007 (2/2932) 0 * * Os_TE_705383 Chr11 26438352 26438353 + TESS 244 0.4039 (1179/2919) 0 * Os_TE_705382 Os_TE_705382 Chr11 26438345 26438344 - TESS 244 0.4051 (1185/2925) 0 * Os_TE_705383 Os_TE_705380 Chr11 26438203 26438204 - ORSgTEMT02000040 196 0.1125 (332/2951) 0 * * Os_TE_705375 Chr11 26433753 26433754 + SPMLIKE 10989 0.0683 (203/2973) 0 * Os_TE_705374 Os_TE_705374 Chr11 26433751 26433750 - ORSgTETN00200001 10994 0.0619 (183/2957) 0 * Os_TE_705375 Os_TE_705373 Chr11 26433411 26433412 + SZ-67LTR 1540 0.0837 (249/2974) 0 * Os_TE_705372 Os_TE_705372 Chr11 26433407 26433406 - RETROSAT5_LTR 13878 0.0877 (262/2988) 0 * Os_TE_705373 Os_TE_705348 Chr11 26429907 26429906 - NDNA1TNA_OS 334 0.0003 (1/2921) 0 * * Os_TE_705345 Chr11 26427544 26427543 - RETRO2_LTR 12874 0.0122 (36/2941) 0 * * Os_TE_705311 Chr11 26412191 26412190 - ORSiTETNOOT00216 3569 0.0144 (43/2981) 0 * * Os_TE_705247 Chr11 26402653 26402654 - RIREX_LTR 8828 0.0041 (9/2195) 0 * Os_TE_705246 Os_TE_705246 Chr11 26402649 26402648 + RIREX_LTR 8828 0.0041 (9/2205) 0 * Os_TE_705247 Os_TE_705240 Chr11 26401113 26401114 - RETRO2_LTR 12874 0.0043 (13/2991) 0 * * Os_TE_705232 Chr11 26399350 26399351 + MPING 430 0.0034 (10/2983) 0 * Os_TE_705231 Os_TE_705231 Chr11 26399348 26399347 - MPING 430 0.0034 (10/2970) 0 * Os_TE_705232 Os_TE_705229 Chr11 26399181 26399180 + EnSpm-13_OS 11171 0.0007 (2/2855) 0 * * Os_TE_705228 Chr11 26399027 26399026 + ORSgTEMT04300005 293 0.0007 (2/2947) 0 * * Os_TE_705220 Chr11 26397165 26397166 + RETRO1_LTR 8314 0.0003 (1/2999) 0 * Os_TE_705219 Os_TE_705219 Chr11 26397161 26397160 - RETRO1_LTR 8314 0.0003 (1/2997) 0 * Os_TE_705220 Os_TE_705214 Chr11 26396937 26396938 - SZ-48LTR 3632 0.0716 (213/2974) 0 * Os_TE_705213 Os_TE_705213 Chr11 26396933 26396932 + SZ-48LTR 3632 0.0701 (208/2966) 0 * Os_TE_705214 Os_TE_705205 Chr11 26395606 26395607 + RETROSAT4_LTR 13504 0.0017 (5/2993) 0 * Os_TE_705204 Os_TE_705204 Chr11 26395602 26395601 - RETROSAT4_LTR 13504 0.0017 (5/2991) 0 * Os_TE_705205 Os_TE_705203 Chr11 26395229 26395230 - SZ-48LTR 3632 0.0017 (5/2984) 0 * Os_TE_705202 Os_TE_705202 Chr11 26395225 26395224 + SZ-48LTR 3632 0.0017 (5/2987) 0 * Os_TE_705203 Os_TE_705201 Chr11 26394656 26394657 + SPMLIKE 10989 0.0117 (34/2899) 0 * Os_TE_705200 Os_TE_705200 Chr11 26394654 26394653 - ORSgTETN00200001 10994 0.0318 (94/2952) 0 * Os_TE_705201 Os_TE_705197 Chr11 26394283 26394284 + TRUNCATOR 2918 0.0015 (4/2667) 0 * * Os_TE_705194 Chr11 26393230 26393231 - OLO24 345 0.0027 (8/2978) 0 * Os_TE_705193 Os_TE_705193 Chr11 26393228 26393227 + OLO24 345 0.0027 (8/2982) 0 * Os_TE_705194 Os_TE_705189 Chr11 26391856 26391857 + SPMLIKE 10989 0.0003 (1/2986) 0 * Os_TE_705188 Os_TE_705188 Chr11 26391854 26391853 - ORSgTETN00200001 10994 0.0003 (1/2991) 0 * Os_TE_705189 Os_TE_705184 Chr11 26391397 26391398 + SPMLIKE 10989 0.0024 (7/2920) 0 * Os_TE_705183 Os_TE_705183 Chr11 26391395 26391394 - ORSgTETN00200001 10994 0.0175 (52/2973) 0 * Os_TE_705184 Os_TE_705182 Chr11 26391238 26391237 + ORSgTEMT02400245 225 0.0027 (8/2970) 0 * Os_TE_705181 Os_TE_705181 Chr11 26391237 26391238 - TYPEM 227 0.0031 (9/2924) 0 * Os_TE_705182 Os_TE_705180 Chr11 26391203 26391202 - TRUNCATOR 2918 0.1236 (366/2960) 0 * Os_TE_705179 Os_TE_705179 Chr11 26391202 26391203 + TRUNCATOR 2918 0.1293 (384/2970) 0 * Os_TE_705180 Os_TE_705178 Chr11 26390589 26390590 + ORSgTETNOOT01998 254 0.0706 (211/2987) 0 * Os_TE_705177 Os_TE_705177 Chr11 26390587 26390586 + ORSgTETNOOT01834 251 0.0710 (212/2985) 0 * Os_TE_705178 Os_TE_705176 Chr11 26390076 26390077 - STOWAWAY11_OS 292 0.0003 (1/2904) 0 * * Os_TE_705174 Chr11 26389842 26389841 - SZ-48LTR 3632 0.0236 (62/2627) 0 * * Os_TE_705173 Chr11 26389841 26389842 - RIREX_LTR 8828 0.0764 (201/2630) 0 * * Os_TE_705167 Chr11 26388228 26388229 + RETROSAT4_LTR 13504 0.0889 (263/2960) 0 * Os_TE_705166 Os_TE_705166 Chr11 26388224 26388223 - SZ-35LTR 3853 0.0976 (291/2982) 0 * Os_TE_705167 Os_TE_705165 Chr11 26387351 26387350 - TYPEM 227 0.0023 (7/2985) 0 * Os_TE_705164 Os_TE_705164 Chr11 26387350 26387351 - ORSgTEMT02400246 177 0.0023 (7/2988) 0 * Os_TE_705165 Os_TE_705163 Chr11 26387163 26387164 - MuDR4_OS 7610 0.0020 (6/2982) 0 * Os_TE_705162 Os_TE_705162 Chr11 26387157 26387156 - MuDR4_OS 7610 0.0023 (7/2987) 0 * Os_TE_705163 Os_TE_705161 Chr11 26387136 26387137 + STOWAWAY1_OS 149 0.0020 (6/2987) 0 * * Os_TE_705160 Chr11 26386792 26386793 + RETROSAT4_LTR 13504 0.0244 (73/2986) 0 * Os_TE_705159 Os_TE_705159 Chr11 26386788 26386787 - RETROSAT4_LTR 13504 0.0261 (78/2986) 0 * Os_TE_705160 Os_TE_705155 Chr11 26385316 26385315 + SEVERIN-2 1952 0.0003 (1/2993) 0 * * Os_TE_705154 Chr11 26385292 26385293 + EnSpm-10_OS 11265 0.0013 (4/2991) 0 * * Os_TE_705153 Chr11 26384461 26384462 + SZ-55_LTR 10318 0.0084 (25/2975) 0 * Os_TE_705152 Os_TE_705152 Chr11 26384457 26384456 - SZ-55_LTR 10318 0.0084 (25/2969) 0 * Os_TE_705153 Os_TE_705144 Chr11 26382930 26382931 + RETROSAT4_LTR 13504 0.0359 (104/2899) 0 * Os_TE_705143 Os_TE_705143 Chr11 26382926 26382925 - SZ-35LTR 3853 0.0548 (161/2939) 0 * Os_TE_705144 Os_TE_705130 Chr11 26381001 26381000 + ORSgTEMT01601983 238 0.0020 (6/2971) 0 * Os_TE_705129 Os_TE_705129 Chr11 26380998 26380999 + ORSgTEMT01602181 239 0.0007 (2/2724) 0 * Os_TE_705130 Os_TE_705128 Chr11 26379601 26379602 - F804 170 0.0003 (1/2975) 0 * * Os_TE_705123 Chr11 26376187 26376188 - MuDR4_OS 7610 0.0048 (14/2894) 0 * * Os_TE_705110 Chr11 26374586 26374587 - RIREX_LTR 8828 0.0020 (6/2993) 0 * Os_TE_705109 Os_TE_705109 Chr11 26374582 26374581 + RIREX_LTR 8828 0.0020 (6/2988) 0 * Os_TE_705110 Os_TE_705108 Chr11 26374013 26374014 - COPI2_LTR 4733 0.0010 (3/2982) 0 * Os_TE_705107 Os_TE_705107 Chr11 26374009 26374008 + COPI2_LTR 4733 0.0010 (3/2972) 0 * Os_TE_705108 Os_TE_705098 Chr11 26357277 26357278 - SZ-48LTR 3632 0.0041 (12/2901) 0 * * Os_TE_705088 Chr11 26349912 26349913 - TREP215 239 0.0026 (7/2745) 0 * * Os_TE_705087 Chr11 26349900 26349901 + RIRE3_LTR 12054 0.0452 (130/2875) 0 * * Os_TE_705078 Chr11 26349089 26349090 - RIREX_LTR 8828 0.0898 (268/2983) 0 * Os_TE_705077 Os_TE_705077 Chr11 26349085 26349084 + RIREX_LTR 8828 0.0876 (261/2978) 0 * Os_TE_705078 Os_TE_705076 Chr11 26349005 26349006 - MuDR4_OS 7610 0.0164 (49/2981) 0 * Os_TE_705075 Os_TE_705075 Chr11 26348998 26348997 - MuDR4_OS 7610 0.0161 (48/2986) 0 * Os_TE_705076 Os_TE_705073 Chr11 26348600 26348599 + RIRE2_LTR 11306 0.0017 (5/2990) 0 * * Os_TE_705064 Chr11 26343962 26343963 - STOWAWAY9_OS 235 0.0011 (3/2817) 0 * Os_TE_705063 Os_TE_705063 Chr11 26343961 26343960 + STOWAWAY9_OS 235 0.0025 (7/2856) 0 * Os_TE_705064 Os_TE_705052 Chr11 26337653 26337652 + COPI2_LTR 4733 0.0076 (21/2750) 0 * * Os_TE_705048 Chr11 26337251 26337250 + RETROSAT4_LTR 13504 0.0004 (1/2832) 0 * * Os_TE_705046 Chr11 26337181 26337182 + EnSpm-10_OS 11265 0.0030 (8/2679) 0 * Os_TE_705045 Os_TE_705045 Chr11 26337179 26337178 - EnSpm-10_OS 11265 0.0034 (9/2681) 0 * Os_TE_705046 Os_TE_705039 Chr11 26334846 26334847 - COPIA2-LTR_OS 6433 0.0345 (103/2987) 0 * * Os_TE_705036 Chr11 26334771 26334770 + EnSpm-10_OS 11265 0.0010 (3/2967) 0 * * Os_TE_705033 Chr11 26334414 26334413 - RIREX_LTR 8828 0.0003 (1/2988) 0 * * Os_TE_705025 Chr11 26332579 26332578 - SEVERIN-2 1952 0.2061 (605/2936) 0 * * Os_TE_705020 Chr11 26331680 26331679 + SEVERIN-2 1952 0.0211 (62/2942) 0 * * Os_TE_705013 Chr11 26328806 26328807 - ORSgTETN00200001 10994 0.0017 (5/2994) 0 * * Os_TE_705009 Chr11 26327871 26327870 + ORSgTEMT01601445 230 0.0003 (1/2941) 0 * * Os_TE_705008 Chr11 26327775 26327776 - SZ-48LTR 3632 0.1680 (495/2947) 0 * Os_TE_705007 Os_TE_705007 Chr11 26327771 26327770 + SZ-48LTR 3632 0.1658 (488/2944) 0 * Os_TE_705008 Os_TE_705004 Chr11 26326456 26326455 - COPI2_LTR 4733 0.0003 (1/2984) 0 * * Os_TE_705003 Chr11 26326045 26326046 - MDR2 6967 0.0045 (11/2459) 0 * * Os_TE_705000 Chr11 26323155 26323156 + OSTONOR1_LTR 6440 0.0004 (1/2851) 0 * * Os_TE_704991 Chr11 26311302 26311303 + SC-8_LTR 4951 0.0020 (6/2992) 0 * Os_TE_704990 Os_TE_704990 Chr11 26311298 26311297 - SC-8_LTR 4951 0.0020 (6/2993) 0 * Os_TE_704991 Os_TE_704984 Chr11 26305709 26305710 - SZ-22_LTR 4403 0.0003 (1/2987) 0 * Os_TE_704983 Os_TE_704983 Chr11 26305705 26305704 + ORSiTERTOOT00034 791 0.0003 (1/2988) 0 * Os_TE_704984 Os_TE_704978 Chr11 26300007 26300008 + OLO24 345 0.0017 (5/2975) 0 * Os_TE_704977 Os_TE_704977 Chr11 26300005 26300004 - OLO24 345 0.0020 (6/2981) 0 * Os_TE_704978 Os_TE_704975 Chr11 26299302 26299303 + CACTA-H 1152 0.0017 (5/2868) 0 * * Os_TE_704962 Chr11 26296351 26296350 - TNR2A 152 0.0003 (1/2962) 0 * * Os_TE_704958 Chr11 26295825 26295826 + ORSgTEMT01602181 239 0.0024 (3/1257) 0 * * Os_TE_704955 Chr11 26292553 26292552 + SZ-67LTR 1540 0.0124 (37/2988) 0 * Os_TE_704954 Os_TE_704954 Chr11 26292528 26292529 + RIRE5-LTR_OS 6427 0.0154 (38/2467) 0 * Os_TE_704955 Os_TE_704952 Chr11 26291577 26286825 + SC-4_LTR 5218 0.2053 (309/1505) 1 Intact * Os_TE_704939 Chr11 26274126 26274125 + ORSgTEMT01601122 212 0.5092 (1521/2987) 0 * * Os_TE_704936 Chr11 26273272 26273271 - STOWAWAY51_OS 246 0.0003 (1/2999) 0 * * Os_TE_704935 Chr11 26272754 26272516 - STOWAWAY9_OS 235 0.6837 (2043/2988) 1 Intact * Os_TE_704920 Chr11 26269420 26269655 + ORSgTEMT01602004 234 0.6473 (1786/2759) 1 Intact * Os_TE_704916 Chr11 26268808 26268570 - ORSgTEMT01601208 238 0.6775 (1947/2874) 1 Intact Os_TE_704915 Os_TE_704915 Chr11 26268570 26268808 + ORSgTEMT01601488 239 0.6789 (2017/2971) 1 Intact Os_TE_704916 Os_TE_704914 Chr11 26268444 26268443 + OLO24 345 0.0003 (1/2982) 0 * * Os_TE_704909 Chr11 26263761 26263762 + TNR2A 152 0.0180 (54/2994) 0 * * Os_TE_704908 Chr11 26263034 26262670 - ORSgTEMT04800063 360 0.7224 (1986/2749) 1 Intact Os_TE_704907 Os_TE_704907 Chr11 26262669 26263034 + ORSgTEMT04800085 366 0.6728 (1960/2913) 1 Intact Os_TE_704908 Os_TE_704900 Chr11 26260532 26260531 - ORSgTEMT02400167 203 0.1599 (423/2646) 0 * * Os_TE_704896 Chr11 26258636 26258635 - MuDR3_OS 8604 0.1057 (300/2837) 0 * * Os_TE_704888 Chr11 26255084 26255085 - ORSiTERTOOT00392 5205 0.0670 (109/1628) 0 * Os_TE_704887 Os_TE_704887 Chr11 26255080 26255079 + ORSiTERTOOT00392 5205 0.0673 (109/1620) 0 * Os_TE_704888 Os_TE_704886 Chr11 26254449 26254450 - COPI2_LTR 4733 0.0012 (2/1602) 0 * Os_TE_704885 Os_TE_704885 Chr11 26254445 26254444 + COPI2_LTR 4733 0.0043 (7/1610) 0 * Os_TE_704886 Os_TE_704865 Chr11 26252005 26225039 + SPMLIKE 10989 0.1210 (307/2538) 1 Intact Os_TE_704846 Os_TE_704846 Chr11 26225039 26252005 - ORSgTETN00200001 10994 0.0728 (177/2432) 1 Intact Os_TE_704865 Os_TE_704845 Chr11 26224820 26224577 + ORSgTEMT01602669 216 0.6221 (1462/2350) 1 Intact Os_TE_704844 Os_TE_704844 Chr11 26224577 26224803 - ORSgTEMT01602413 239 0.6097 (1434/2352) 1 Intact Os_TE_704845 Os_TE_704842 Chr11 26224494 26224493 + ORSgTERT00201382 11280 0.0018 (4/2256) 0 * * Os_TE_704841 Chr11 26224300 26224301 + RETROSAT2LTR 12796 0.0039 (9/2314) 0 * Os_TE_704840 Os_TE_704840 Chr11 26224298 26224297 - RETROSAT2LTR 12796 0.0099 (23/2327) 0 * Os_TE_704841 Os_TE_704837 Chr11 26223371 26223372 + NDNA1TNA_OS 334 0.1755 (419/2388) 0 * * Os_TE_704834 Chr11 26223258 26223259 + HARB-1_OS 5166 0.0009 (2/2346) 0 * Os_TE_704833 Os_TE_704833 Chr11 26223256 26223255 - HARB-1_OS 5166 0.0009 (2/2294) 0 * Os_TE_704834 Os_TE_704826 Chr11 26222150 26222149 + ORSgTEMT00900053 249 0.3804 (899/2363) 0 * Os_TE_704825 Os_TE_704825 Chr11 26222147 26222148 + ORSgTEMT00901862 245 0.3353 (741/2210) 0 * Os_TE_704826 Os_TE_704822 Chr11 26220760 26220759 + SC-1_LTR 6888 0.4774 (1170/2451) 0 * * Os_TE_704821 Chr11 26218723 26218724 - ORSiTERTOOT00271 11428 0.1593 (459/2881) 0 * Os_TE_704820 Os_TE_704820 Chr11 26218719 26218718 - SZ-10LTR 1412 0.1587 (457/2880) 0 * Os_TE_704821 Os_TE_704818 Chr11 26217278 26217279 - TOS17LTR 138 0.1224 (353/2883) 0 * Os_TE_704817 Os_TE_704817 Chr11 26217274 26217273 + TOS17LTR 138 0.1173 (338/2881) 0 * Os_TE_704818 Os_TE_704815 Chr11 26213726 26213727 + RETROSAT2LTR 12796 0.0021 (6/2891) 0 * Os_TE_704814 Os_TE_704814 Chr11 26213724 26213723 - RETROSAT2LTR 12796 0.0024 (7/2889) 0 * Os_TE_704815 Os_TE_704804 Chr11 26208326 26208325 - ORSgTEMT01601834 234 0.2715 (699/2575) 0 * * Os_TE_704775 Chr11 26196964 26196965 - CLOUD 734 0.0028 (6/2160) 0 * * Os_TE_704774 Chr11 26196958 26196959 - OSTE20 496 0.0162 (35/2161) 0 * Os_TE_704773 Os_TE_704773 Chr11 26196954 26196953 - OSTE20 496 0.0162 (35/2164) 0 * Os_TE_704774 Os_TE_704772 Chr11 26196630 26196629 + RIRE2_LTR 11306 0.0120 (24/2003) 0 * * Os_TE_704771 Chr11 26194732 26193717 + CACTA-B 1103 0.5800 (1541/2657) 1 Intact * Os_TE_704768 Chr11 26192775 26192776 - COPI2_LTR 4733 0.0009 (2/2185) 0 * * Os_TE_704748 Chr11 26179739 26177884 - MERMITEA 1710 0.8678 (1497/1725) 1 Intact * Os_TE_704746 Chr11 26177492 26177491 - TRUNCATOR 2918 0.0353 (98/2780) 0 * Os_TE_704745 Os_TE_704745 Chr11 26177491 26177492 + TRUNCATOR 2918 0.0347 (99/2857) 0 * Os_TE_704746 Os_TE_704721 Chr11 26172187 26172188 - ORSgTETNOOT02539 260 0.5228 (1376/2632) 0 * * Os_TE_704720 Chr11 26172147 26171923 - ORSiTEMT01600009 249 0.5469 (1480/2706) 1 Intact * Os_TE_704718 Chr11 26171644 26171643 - RIRE2_LTR 11306 0.0110 (31/2818) 0 * * Os_TE_704712 Chr11 26168555 26161816 - MuDR2_OS 6770 0.0886 (142/1603) 1 Intact Os_TE_704711 Os_TE_704711 Chr11 26161816 26168555 + MuDR2_OS 6770 0.0834 (133/1595) 1 Intact Os_TE_704712 Os_TE_704664 Chr11 26129381 26129382 - RETROSAT2LTR 12796 0.1435 (252/1756) 0 * * Os_TE_704662 Chr11 26128765 26128764 - ORSgTERT00201216 11284 0.0089 (10/1124) 0 * * Os_TE_704625 Chr11 26108643 26108644 - RETRO2_LTR 12874 0.0024 (5/2091) 0 * * Os_TE_704603 Chr11 26096729 26096730 + COPIA2-LTR_OS 6433 0.0022 (3/1349) 0 * * Os_TE_704593 Chr11 26089467 26089468 + COPIA2-LTR_OS 6433 0.0021 (6/2908) 0 * * Os_TE_704576 Chr11 26084242 26084243 + OLO24B 335 0.0052 (7/1347) 0 * * Os_TE_704575 Chr11 26083988 26083987 - TRUNCATOR 2918 0.0405 (55/1359) 0 * Os_TE_704574 Os_TE_704574 Chr11 26083987 26083988 - TRUNCATOR2_LTR 2904 0.0402 (55/1368) 0 * Os_TE_704575 Os_TE_704573 Chr11 26083833 26083834 + MUDR_N7_OS 1283 0.0044 (6/1349) 0 * Os_TE_704572 Os_TE_704572 Chr11 26083825 26083824 - MUDR_N7_OS 1283 0.0045 (6/1348) 0 * Os_TE_704573 Os_TE_704571 Chr11 26083728 26083729 - EnSpm-10_OS 11265 0.0015 (2/1358) 0 * Os_TE_704570 Os_TE_704570 Chr11 26083726 26083725 + EnSpm-10_OS 11265 0.0015 (2/1348) 0 * Os_TE_704571 Os_TE_704569 Chr11 26083700 26083701 + ORSgTETNOOT00908 242 0.0052 (7/1348) 0 * * Os_TE_704568 Chr11 26083325 26083326 + RIREX_LTR 8828 0.0269 (36/1338) 0 * * Os_TE_704552 Chr11 26076732 26076733 - COPI2_LTR 4733 0.0007 (1/1454) 0 * Os_TE_704551 Os_TE_704551 Chr11 26076728 26076727 + COPI2_LTR 4733 0.0007 (1/1428) 0 * Os_TE_704552 Os_TE_704550 Chr11 26076316 26076317 + SZ-9LTR 965 0.0301 (41/1360) 0 * Os_TE_704549 Os_TE_704549 Chr11 26076312 26076311 - SZ-9LTR 965 0.0301 (41/1360) 0 * Os_TE_704550 Os_TE_704548 Chr11 26076090 26076091 + COPIA2-LTR_OS 6433 0.0059 (8/1345) 0 * Os_TE_704547 Os_TE_704547 Chr11 26076086 26076085 - COPIA2-LTR_OS 6433 0.0052 (7/1350) 0 * Os_TE_704548 Os_TE_704539 Chr11 26074676 26074675 + SPMLIKE 10989 0.0295 (40/1355) 0 * * Os_TE_704516 Chr11 26067306 26070501 - GYPSY-A_LTR 8951 0.6031 (746/1237) 1 Solo_LTR * Os_TE_704510 Chr11 26061961 26060575 - CACTA-M 1129 0.3010 (400/1329) 1 Intact Os_TE_704509 Os_TE_704509 Chr11 26060575 26061961 + CACTA-H 1152 0.2943 (390/1325) 1 Intact Os_TE_704510 Os_TE_704492 Chr11 26055199 26055200 - RIREX_LTR 8828 0.0067 (19/2822) 0 * * Os_TE_704487 Chr11 26054674 26054673 - RETROSAT2LTR 12796 0.0207 (59/2853) 0 * * Os_TE_704486 Chr11 26054613 26054614 + COPI2_LTR 4733 0.0007 (2/2859) 0 * Os_TE_704485 Os_TE_704485 Chr11 26054609 26054608 - COPI2_LTR 4733 0.0007 (2/2862) 0 * Os_TE_704486 Os_TE_704476 Chr11 26050204 26050205 - COPIA2-LTR_OS 6433 0.0010 (3/2859) 0 * Os_TE_704475 Os_TE_704475 Chr11 26050200 26050199 + COPIA2-LTR_OS 6433 0.0007 (2/2856) 0 * Os_TE_704476 Os_TE_704474 Chr11 26048881 26048882 + ENSPM5_OS 9581 0.0779 (217/2786) 0 * Os_TE_704473 Os_TE_704473 Chr11 26048879 26048878 - ENSPM5_OS 9581 0.0753 (210/2789) 0 * Os_TE_704474 Os_TE_704456 Chr11 26038936 26038935 - SZ-48LTR 3632 0.0026 (7/2699) 0 * * Os_TE_704446 Chr11 26035906 26035907 - GYPSY-A_LTR 8951 0.0003 (1/2990) 0 * * Os_TE_704430 Chr11 26032474 26032475 - RPO_OS 1983 0.0236 (66/2796) 0 * * Os_TE_704429 Chr11 26031166 26031167 + RIREX_LTR 8828 0.0007 (2/2854) 0 * Os_TE_704428 Os_TE_704428 Chr11 26031162 26031161 - RIREX_LTR 8828 0.0007 (2/2853) 0 * Os_TE_704429 Os_TE_704426 Chr11 26031108 26031107 + RIRE2_LTR 11306 0.0025 (7/2851) 0 * * Os_TE_704424 Chr11 26030642 26030641 + RIREX_LTR 8828 0.0025 (7/2852) 0 * * Os_TE_704416 Chr11 26027666 26019282 + RIREX_LTR 8828 0.3185 (908/2851) 1 Intact Os_TE_704413 Os_TE_704413 Chr11 26019282 26027666 - RIREX_LTR 8828 0.3135 (896/2858) 1 Intact Os_TE_704416 Os_TE_704366 Chr11 25969447 25969448 + RIREX_LTR 8828 0.0004 (1/2835) 0 * * Os_TE_704361 Chr11 25968512 25968513 - RETRO2_LTR 12874 0.1225 (308/2515) 0 * * Os_TE_704353 Chr11 25965806 25965807 + CACTA-H 1152 0.0263 (67/2547) 0 * Os_TE_704352 Os_TE_704352 Chr11 25965803 25965802 + ORSgTETN00200005 1121 0.0303 (85/2809) 0 * Os_TE_704353 Os_TE_704338 Chr11 25962641 25962642 + RIREX_LTR 8828 0.0018 (5/2850) 0 * * Os_TE_704318 Chr11 25955841 25955840 - DS-RICE2N 613 0.0007 (2/2873) 0 * * Os_TE_704303 Chr11 25954770 25954771 - RIRE2_LTR 11306 0.0014 (4/2771) 0 * Os_TE_704302 Os_TE_704302 Chr11 25954766 25954765 - ORSgTERT00201216 11284 0.0014 (4/2768) 0 * Os_TE_704303 Os_TE_704296 Chr11 25953892 25953893 + ORSiTERTOOT00074 4935 0.0314 (91/2898) 0 * * Os_TE_704282 Chr11 25950045 25950046 + OSTONOR1_LTR 6440 0.0010 (3/2890) 0 * Os_TE_704281 Os_TE_704281 Chr11 25950041 25950040 - ORSiTERT00100062 5674 0.0014 (4/2890) 0 * Os_TE_704282 Os_TE_704267 Chr11 25948742 25948743 + ORSgTETNOOT00032 218 0.0342 (93/2722) 0 * * Os_TE_704265 Chr11 25948721 25948720 - INDITTO 263 0.0004 (1/2684) 0 * * Os_TE_704214 Chr11 25934279 25934280 + Cassandra_OS-LTR 764 0.0004 (1/2608) 0 * * Os_TE_704212 Chr11 25934178 25934177 + RIRE3_LTR 12054 0.0015 (4/2616) 0 * * Os_TE_704211 Chr11 25934014 25934015 + COPIA2-LTR_OS 6433 0.0004 (1/2593) 0 * * Os_TE_704194 Chr11 25914219 25914220 + RIREX_LTR 8828 0.0023 (6/2644) 0 * Os_TE_704193 Os_TE_704193 Chr11 25914215 25914214 - RIREX_LTR 8828 0.0023 (6/2617) 0 * Os_TE_704194 Os_TE_704162 Chr11 25898050 25898051 - MDR2 6967 0.0184 (52/2832) 0 * * Os_TE_704144 Chr11 25893173 25893174 - OSLINE1-2 7128 0.6115 (1801/2945) 0 * * Os_TE_704142 Chr11 25893024 25893025 - ORSgTEMT00501356 145 0.0007 (2/2970) 0 * * Os_TE_704129 Chr11 25887430 25887429 - ORSgTEMT01602413 239 0.0017 (5/2997) 0 * Os_TE_704128 Os_TE_704128 Chr11 25887427 25887428 - ORSgTEMT01600079 232 0.0013 (4/2994) 0 * Os_TE_704129 Os_TE_704127 Chr11 25885921 25885922 + ORSgTEMT01601934 207 0.7671 (2029/2645) 0 * * Os_TE_704124 Chr11 25885609 25885608 - RIRE2_LTR 11306 0.0003 (1/2957) 0 * * Os_TE_704116 Chr11 25884609 25884610 - ORSiTERT00200154 9386 0.0007 (2/2834) 0 * Os_TE_704115 Os_TE_704115 Chr11 25884603 25884602 + TRUNCATOR 2918 0.0010 (3/2861) 0 * Os_TE_704116 Os_TE_704105 Chr11 25881130 25881129 - RETROSAT2LTR 12796 0.0003 (1/2978) 0 * * Os_TE_704103 Chr11 25880546 25880545 + ENSPM4_OS 11610 0.0034 (10/2927) 0 * * Os_TE_704101 Chr11 25879807 25879806 + SEVERIN-2 1952 0.0017 (5/2967) 0 * Os_TE_704100 Os_TE_704100 Chr11 25879806 25879807 - SEVERIN-2 1952 0.0010 (3/2993) 0 * Os_TE_704101 Os_TE_704069 Chr11 25868454 25867633 - ORSgTETNOOT00356 266 0.8698 (1697/1951) 1 Intact * Os_TE_704064 Chr11 25860285 25860516 + STOWAWAY41_OS 264 0.6857 (1741/2539) 1 Intact * Os_TE_704061 Chr11 25859408 25859407 + CASGRANDA 465 0.0011 (3/2802) 0 * * Os_TE_704038 Chr11 25854728 25854727 - ORSgTEMT01400033 210 0.0027 (8/2916) 0 * * Os_TE_704037 Chr11 25854676 25854677 - ORSgTEMT01400022 212 0.3833 (1079/2815) 0 * Os_TE_704036 Os_TE_704036 Chr11 25854675 25854674 + ORSgTEMT01400003 213 0.3467 (926/2671) 0 * Os_TE_704037 Os_TE_704000 Chr11 25848937 25848938 + INDITTO 263 0.0027 (8/2983) 0 * Os_TE_703999 Os_TE_703999 Chr11 25848935 25848934 - INDITTO 263 0.0030 (9/2983) 0 * Os_TE_704000 Os_TE_703996 Chr11 25848551 25848308 + ORSgTETNOOT01668 244 0.2049 (550/2684) 1 Intact * Os_TE_703984 Chr11 25844692 25844693 - ORSgTERT00100663 207 0.0007 (2/2970) 0 * * Os_TE_703979 Chr11 25840193 25840192 - COPIA2-LTR_OS 6433 0.0003 (1/2960) 0 * * Os_TE_703976 Chr11 25838665 25838664 + SPMLIKE 10989 0.0024 (7/2905) 0 * * Os_TE_703965 Chr11 25838047 25837440 - DS-RICE2N 613 0.6212 (1640/2640) 1 Intact * Os_TE_703957 Chr11 25836085 25836084 + ORSgTEMT00901844 250 0.0040 (12/2985) 0 * Os_TE_703956 Os_TE_703956 Chr11 25836081 25836082 - ORSgTEMT00900099 250 0.0043 (13/2990) 0 * Os_TE_703957 Os_TE_703946 Chr11 25831708 25831709 - LINE-4_OS 3662 0.0007 (2/2976) 0 * * Os_TE_703931 Chr11 25826125 25826124 + ORSgTEMT01701104 154 0.0017 (5/2957) 0 * Os_TE_703930 Os_TE_703930 Chr11 25826122 25826123 - ORSgTEMT01701418 151 0.0018 (5/2799) 0 * Os_TE_703931 Os_TE_703929 Chr11 25826076 25826075 + OLO24 345 0.4021 (1164/2895) 0 * * Os_TE_703928 Chr11 25826022 25826023 + ORSgTETNOOT01668 244 0.0003 (1/2892) 0 * * Os_TE_703925 Chr11 25825379 25825380 + ORSgTEMT01400031 216 0.4123 (1140/2765) 0 * * Os_TE_703920 Chr11 25822232 25822233 - MPING 430 0.0185 (51/2758) 0 * * Os_TE_703915 Chr11 25822098 25822099 - COPIA2-LTR_OS 6433 0.0003 (1/2929) 0 * Os_TE_703914 Os_TE_703914 Chr11 25822094 25822093 + COPIA2-LTR_OS 6433 0.0003 (1/2901) 0 * Os_TE_703915 Os_TE_703907 Chr11 25819020 25819021 + DASIA-2 1198 0.0004 (1/2771) 0 * * Os_TE_703904 Chr11 25816113 25816114 + ORSiTERTOOT00402 2660 0.0218 (65/2988) 0 * Os_TE_703903 Os_TE_703903 Chr11 25816109 25816108 - ORSiTERTOOT00402 2660 0.0231 (69/2991) 0 * Os_TE_703904 Os_TE_703901 Chr11 25813570 25813571 - SZ-55_LTR 10318 0.0003 (1/2986) 0 * Os_TE_703900 Os_TE_703900 Chr11 25813566 25813565 + SZ-55_LTR 10318 0.0003 (1/2981) 0 * Os_TE_703901 Os_TE_703899 Chr11 25812573 25812315 + ORSgTETNOOT01225 240 0.8626 (2562/2970) 1 Intact * Os_TE_703895 Chr11 25812259 25812258 - HARB-1_OS 5166 0.0191 (56/2929) 0 * * Os_TE_703892 Chr11 25811693 25811694 - MPING 430 0.0007 (2/2978) 0 * Os_TE_703891 Os_TE_703891 Chr11 25811691 25811690 + MPING 430 0.0007 (2/2976) 0 * Os_TE_703892 Os_TE_703890 Chr11 25811573 25811574 + COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_703889 Os_TE_703889 Chr11 25811569 25811568 - COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * Os_TE_703890 Os_TE_703882 Chr11 25810435 25810434 - TYPEM 227 0.0066 (19/2887) 0 * Os_TE_703881 Os_TE_703881 Chr11 25810434 25810435 - ORSgTEMT02400246 177 0.0068 (20/2921) 0 * Os_TE_703882 Os_TE_703875 Chr11 25805684 25805685 - SZ-62LTR 3649 0.0020 (6/2989) 0 * Os_TE_703874 Os_TE_703874 Chr11 25805680 25805679 + SZ-62LTR 3649 0.0020 (6/2990) 0 * Os_TE_703875 Os_TE_703869 Chr11 25805131 25805132 + TRUNCATOR 2918 0.0557 (162/2910) 0 * * Os_TE_703830 Chr11 25788808 25788809 - ORSgTERT00201216 11284 0.0161 (40/2488) 0 * * Os_TE_703825 Chr11 25788367 25788368 - OSR3_LTR 5201 0.0020 (6/2979) 0 * * Os_TE_703822 Chr11 25787784 25787785 + TELIA 141 0.0003 (1/2976) 0 * * Os_TE_703814 Chr11 25786408 25786407 + RIREX_LTR 8828 0.0005 (1/2058) 0 * * Os_TE_703811 Chr11 25786014 25785833 + ORSgTEMT01701879 145 0.5123 (1290/2518) 1 Intact Os_TE_703810 Os_TE_703810 Chr11 25785831 25786009 - ORSgTEMT01701348 105 0.5262 (1347/2560) 1 Intact Os_TE_703811 Os_TE_703808 Chr11 25785274 25785273 + NDNA1TNA_OS 334 0.0280 (66/2357) 0 * * Os_TE_703798 Chr11 25783944 25783945 - ORSgTEMT01400033 210 0.1275 (378/2964) 0 * * Os_TE_703797 Chr11 25783798 25783799 + ORSgTETNOOT01522 239 0.0125 (37/2960) 0 * Os_TE_703796 Os_TE_703796 Chr11 25783796 25783795 + ORSgTETNOOT00908 242 0.0121 (36/2978) 0 * Os_TE_703797 Os_TE_703795 Chr11 25783270 25782945 - ORSgTEMT00100582 334 0.2145 (640/2983) 1 Intact Os_TE_703793 Os_TE_703793 Chr11 25782938 25783269 + NDNA1TNA_OS 334 0.2283 (632/2768) 1 Intact Os_TE_703795 Os_TE_703792 Chr11 25782767 25782518 + ORSgTEMT01601525 239 0.8809 (2612/2965) 1 Intact * Os_TE_703790 Chr11 25782749 25782518 + ORSgTEMT01601018 231 0.4811 (1131/2351) 1 Intact Os_TE_703789 Os_TE_703789 Chr11 25782518 25782756 - ORSgTEMT01602413 239 0.5551 (1515/2729) -1 Intact Os_TE_703790 Os_TE_703786 Chr11 25781646 25781647 + WUWU 113 0.1284 (384/2990) 0 * * Os_TE_703785 Chr11 25781265 25781264 - ORSgTEMT00501356 145 0.1156 (345/2985) 0 * Os_TE_703784 Os_TE_703784 Chr11 25781264 25781265 + ORSgTETNOOT01930 140 0.1152 (344/2985) 0 * Os_TE_703785 Os_TE_703782 Chr11 25775795 25775794 + STOWAWAY50_OS 174 0.0017 (5/2983) 0 * Os_TE_703781 Os_TE_703781 Chr11 25775792 25775793 - ORSgTEMT01701882 154 0.0017 (5/2987) 0 * Os_TE_703782 Os_TE_703780 Chr11 25775714 25775715 + F770 284 0.0074 (22/2992) 0 * * Os_TE_703779 Chr11 25774610 25775125 - ORSiTERTOOT00294 1794 0.2552 (755/2959) 1 Intact * Os_TE_703776 Chr11 25773967 25773966 - ORSgTEMT00502293 151 0.7345 (2136/2908) 0 * * Os_TE_703775 Chr11 25773936 25773937 + ORSgTEMT00501222 152 0.0025 (2/788) 0 * * Os_TE_703774 Chr11 25773824 25773825 + ORSiTERT00100071 4657 0.5871 (1139/1940) 0 * Os_TE_703773 Os_TE_703773 Chr11 25773821 25773820 - SZ-25LTR 330 0.3721 (1108/2978) 0 * Os_TE_703774 Os_TE_703771 Chr11 25773247 25772910 + ORSgTEMT00101674 340 0.2698 (769/2850) 1 Intact Os_TE_703770 Os_TE_703770 Chr11 25772910 25773245 + ORSgTEMT00101341 314 0.2385 (679/2847) 1 Intact Os_TE_703771 Os_TE_703767 Chr11 25772782 25772783 - STOWAWAY11_OS 292 0.4381 (1129/2577) 0 * * Os_TE_703746 Chr11 25754353 25755008 - Cassandra_OS-LTR 764 0.5870 (577/983) 1 Intact * Os_TE_703743 Chr11 25753815 25758154 - RETROSAT4_LTR 13504 0.4436 (562/1267) 1 Solo_LTR * Os_TE_703717 Chr11 25733370 25733369 - TRUNCATOR 2918 0.2702 (157/581) 0 * * Os_TE_703714 Chr11 25732306 25729406 - TRUNCATOR2_LTR 2904 0.4164 (244/586) 1 Intact * Os_TE_703680 Chr11 25703456 25703455 + RIRE3A_LTR 10580 0.0017 (1/590) 0 * * Os_TE_703675 Chr11 25700736 25700455 - Cassandra_OS-LTR 764 0.3976 (569/1431) 1 Solo_LTR * Os_TE_703672 Chr11 25699482 25699483 - TYPEU1 380 0.0033 (2/603) 0 * * Os_TE_703667 Chr11 25694059 25694060 + OSTE33 1012 0.4895 (257/525) 0 * Os_TE_703666 Os_TE_703666 Chr11 25694050 25694049 + OSTE33 1012 0.5037 (270/536) 0 * Os_TE_703667 Os_TE_703659 Chr11 25681273 25681272 + NDNA1TNA_OS 334 0.2776 (166/598) 0 * Os_TE_703658 Os_TE_703658 Chr11 25681268 25681269 + ORSgTEMT00100531 325 0.2729 (164/601) 0 * Os_TE_703659 Os_TE_703657 Chr11 25681169 25681170 - SZ-52_LTR 13107 0.0422 (25/592) 0 * Os_TE_703656 Os_TE_703656 Chr11 25681165 25681164 + SZ-52_LTR 13107 0.0405 (24/593) 0 * Os_TE_703657 Os_TE_703650 Chr11 25677513 25677514 - SZ-62LTR 3649 0.0010 (2/2012) 0 * * Os_TE_703645 Chr11 25674689 25674688 + ORSiTERTOOT00027 10853 0.0014 (3/2088) 0 * * Os_TE_703623 Chr11 25669799 25669798 + TRUNCATOR 2918 0.0098 (19/1933) 0 * Os_TE_703622 Os_TE_703622 Chr11 25669798 25669799 - TRUNCATOR 2918 0.0098 (22/2237) 0 * Os_TE_703623 Os_TE_703620 Chr11 25668167 25668168 - RIRE3A_LTR 10580 0.0005 (1/2048) 0 * * Os_TE_703606 Chr11 25660050 25660051 + TRUNCATOR2_LTR 2904 0.0035 (7/2013) 0 * Os_TE_703605 Os_TE_703605 Chr11 25660046 25660045 - TRUNCATOR2_LTR 2904 0.0030 (6/2006) 0 * Os_TE_703606 Os_TE_703604 Chr11 25660040 25660039 + RIREX_LTR 8828 0.0035 (7/1999) 0 * * Os_TE_703582 Chr11 25645410 25645411 + RIREX_LTR 8828 0.0272 (15/551) 0 * Os_TE_703581 Os_TE_703581 Chr11 25645406 25645405 - RIREX_LTR 8828 0.0307 (17/554) 0 * Os_TE_703582 Os_TE_703576 Chr11 25639877 25639878 - RIRE3_LTR 12054 0.0037 (7/1909) 0 * Os_TE_703575 Os_TE_703575 Chr11 25639873 25639872 + ORSiTERTOOT00027 10853 0.0056 (9/1613) 0 * Os_TE_703576 Os_TE_703534 Chr11 25623762 25623763 + OSTE33 1012 0.0497 (146/2940) 0 * Os_TE_703533 Os_TE_703533 Chr11 25623753 25623752 + OSTE33 1012 0.0401 (117/2919) 0 * Os_TE_703534 Os_TE_703528 Chr11 25622578 25622577 + ORSiTERTOOT00004 4000 0.0004 (1/2838) 0 * * Os_TE_703526 Chr11 25621225 25621226 + SZ-48LTR 3632 0.0490 (146/2979) 0 * * Os_TE_703521 Chr11 25620407 25620406 - SZ-55_LTR 10318 0.1702 (470/2762) 0 * * Os_TE_703517 Chr11 25613949 25613950 - ORSgTERT00201216 11284 0.0003 (1/2989) 0 * Os_TE_703516 Os_TE_703516 Chr11 25613945 25613944 - RIRE2_LTR 11306 0.0003 (1/2992) 0 * Os_TE_703517 Os_TE_703515 Chr11 25612992 25612993 + SZ-48LTR 3632 0.0730 (214/2930) 0 * * Os_TE_703504 Chr11 25610395 25610394 + SZLTR 1249 0.0007 (2/2913) 0 * * Os_TE_703497 Chr11 25609881 25609880 + SPMLIKE 10989 0.0003 (1/2944) 0 * * Os_TE_703490 Chr11 25607213 25607214 + RETROSAT4_LTR 13504 0.0245 (73/2977) 0 * * Os_TE_703481 Chr11 25605435 25605436 + RETROSAT2LTR 12796 0.0248 (74/2986) 0 * Os_TE_703480 Os_TE_703480 Chr11 25605433 25605432 - RETROSAT2LTR 12796 0.0255 (76/2981) 0 * Os_TE_703481 Os_TE_703479 Chr11 25605127 25605126 - TYPEM 227 0.0070 (21/2985) 0 * Os_TE_703478 Os_TE_703478 Chr11 25605126 25605127 - ORSgTEMT02400246 177 0.0064 (19/2983) 0 * Os_TE_703479 Os_TE_703473 Chr11 25604321 25604320 + ORSgTETNOOT00221 261 0.0050 (15/2988) 0 * * Os_TE_703450 Chr11 25596499 25596498 - OSLINE1-2 7128 0.0007 (2/2971) 0 * * Os_TE_703449 Chr11 25596308 25596309 + ORSgTEMT00600272 361 0.1146 (339/2958) 0 * Os_TE_703448 Os_TE_703448 Chr11 25596306 25596305 - CASTAWAY 364 0.1113 (330/2966) 0 * Os_TE_703449 Os_TE_703447 Chr11 25596105 25596106 - ORSgTEMT00600524 364 0.1464 (421/2875) 0 * Os_TE_703446 Os_TE_703446 Chr11 25596103 25596102 + ORSgTEMT00600272 361 0.1436 (427/2974) 0 * Os_TE_703447 Os_TE_703444 Chr11 25595177 25595176 + SPMLIKE 10989 0.0003 (1/2926) 0 * * Os_TE_703440 Chr11 25592436 25592437 + SC-1_LTR 6888 0.0197 (59/2993) 0 * * Os_TE_703439 Chr11 25592188 25592189 - RIRE2_LTR 11306 0.0037 (11/2983) 0 * Os_TE_703438 Os_TE_703438 Chr11 25592184 25592183 - ORSgTERT00201216 11284 0.0037 (11/2994) 0 * Os_TE_703439 Os_TE_703437 Chr11 25591835 25591836 - COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_703436 Os_TE_703436 Chr11 25591831 25591830 + COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_703437 Os_TE_703435 Chr11 25591650 25591651 + STOWAWAY1_OS 149 0.0040 (12/2996) 0 * * Os_TE_703434 Chr11 25591173 25591174 - RIREX_LTR 8828 0.0017 (5/2997) 0 * Os_TE_703433 Os_TE_703433 Chr11 25591169 25591168 + RIREX_LTR 8828 0.0017 (5/2997) 0 * Os_TE_703434 Os_TE_703402 Chr11 25583300 25583301 + AMYLTP 383 0.0062 (18/2906) 0 * Os_TE_703401 Os_TE_703401 Chr11 25583292 25583291 - AMYLTP 383 0.0062 (18/2913) 0 * Os_TE_703402 Os_TE_703399 Chr11 25583211 25583210 - INDITTO 263 0.0004 (1/2760) 0 * * Os_TE_703392 Chr11 25582758 25582757 - ORSgTEMT02400246 177 0.0031 (9/2928) 0 * * Os_TE_703388 Chr11 25582273 25582272 - ORSgTEMT01601834 234 0.0043 (13/2995) 0 * Os_TE_703387 Os_TE_703387 Chr11 25582270 25582271 + ORSgTEMT01601934 207 0.0040 (12/2994) 0 * Os_TE_703388 Os_TE_703381 Chr11 25579134 25579135 + GYPSY-A_LTR 8951 0.0017 (5/2988) 0 * * Os_TE_703379 Chr11 25577425 25577424 + STOWAWAY51_OS 246 0.0003 (1/2943) 0 * Os_TE_703378 Os_TE_703378 Chr11 25577419 25577420 - STOWAWAY51_OS 246 0.0007 (2/2931) 0 * Os_TE_703379 Os_TE_703366 Chr11 25570338 25570339 + STOWAWAY11_OS 292 0.6501 (1856/2855) 0 * Os_TE_703365 Os_TE_703365 Chr11 25570337 25570336 - STOWAWAY11_OS 292 0.6154 (1717/2790) 0 * Os_TE_703366 Os_TE_703361 Chr11 25566519 25566520 + SZ-62LTR 3649 0.0442 (132/2984) 0 * * Os_TE_703359 Chr11 25565808 25565809 - TRUNCATOR2_LTR 2904 0.0003 (1/2929) 0 * Os_TE_703358 Os_TE_703358 Chr11 25565804 25565803 + ORSiTERTOOT00028 8600 0.0003 (1/2929) 0 * Os_TE_703359 Os_TE_703341 Chr11 25556784 25556785 - ORSgTEMT00500321 149 0.0004 (1/2857) 0 * * Os_TE_703327 Chr11 25550356 25550357 + COPI2_LTR 4733 0.0003 (1/2990) 0 * Os_TE_703326 Os_TE_703326 Chr11 25550352 25550351 - COPI2_LTR 4733 0.0003 (1/2988) 0 * Os_TE_703327 Os_TE_703324 Chr11 25548301 25548302 + MPING 430 0.0003 (1/2985) 0 * Os_TE_703323 Os_TE_703323 Chr11 25548299 25548298 - MPING 430 0.0003 (1/2989) 0 * Os_TE_703324 Os_TE_703311 Chr11 25545160 25545159 - TYPEM 227 0.0124 (37/2994) 0 * * Os_TE_703296 Chr11 25540640 25540641 + OSR3_LTR 5201 0.0020 (6/2997) 0 * Os_TE_703295 Os_TE_703295 Chr11 25540636 25540635 - OSR3_LTR 5201 0.0020 (6/2997) 0 * Os_TE_703296 Os_TE_703292 Chr11 25536793 25536794 + F569 228 0.0010 (3/2987) 0 * Os_TE_703291 Os_TE_703291 Chr11 25536791 25536790 - F569 228 0.0010 (3/2983) 0 * Os_TE_703292 Os_TE_703278 Chr11 25523827 25523828 - DITAILA 257 0.0942 (278/2950) 0 * * Os_TE_703277 Chr11 25522149 25522150 - STOWAWAY11_OS 292 0.0003 (1/2957) 0 * * Os_TE_703271 Chr11 25520239 25518594 + ENSPM4_OS 11610 0.5458 (1603/2937) 1 Intact * Os_TE_703268 Chr11 25518473 25518472 - ORSgTETNOOT02162 259 0.4761 (1407/2955) 0 * Os_TE_703267 Os_TE_703267 Chr11 25518472 25518473 - ORSgTETNOOT02549 250 0.4760 (1418/2979) 0 * Os_TE_703268 Os_TE_703255 Chr11 25517289 25517288 - HARB-1_OS 5166 0.0190 (31/1635) 0 * * Os_TE_703248 Chr11 25515558 25515321 - ORSgTEMT01600639 228 0.5255 (1546/2942) 1 Intact Os_TE_703246 Os_TE_703246 Chr11 25515321 25515558 - ORSgTEMT01601208 238 0.5099 (1472/2887) 1 Intact Os_TE_703248 Os_TE_703216 Chr11 25507107 25507108 - ORSgTETN00200001 10994 0.0031 (5/1623) 0 * Os_TE_703215 Os_TE_703215 Chr11 25507105 25507104 + SPMLIKE 10989 0.0031 (5/1631) 0 * Os_TE_703216 Os_TE_703214 Chr11 25505509 25505510 - SZ-40LTR 2465 0.0007 (2/2757) 0 * Os_TE_703213 Os_TE_703213 Chr11 25505505 25505504 + SZ-40LTR 2465 0.0007 (2/2882) 0 * Os_TE_703214 Os_TE_703201 Chr11 25500559 25500558 + RIREX_LTR 8828 0.0003 (1/2923) 0 * * Os_TE_703188 Chr11 25498773 25496758 - CLOUD-7 495 0.5348 (1597/2986) 1 Intact * Os_TE_703185 Chr11 25498269 25498270 - COPIA2-LTR_OS 6433 0.0038 (9/2363) 0 * * Os_TE_703183 Chr11 25496758 25498772 - CLOUD-7 495 0.5367 (1595/2972) 1 Intact * Os_TE_703178 Chr11 25490951 25479649 - RIRE2_LTR 11306 0.5862 (942/1607) 1 Intact Os_TE_703161 Os_TE_703161 Chr11 25479649 25490951 - ORSgTERT00201216 11284 0.5947 (967/1626) 1 Intact Os_TE_703178 Os_TE_703160 Chr11 25477936 25477935 - RETROSAT3_LTR 11537 0.0586 (173/2952) 0 * * Os_TE_703156 Chr11 25476413 25476412 - COPI1_LTR 4721 0.0103 (17/1657) 0 * * Os_TE_703153 Chr11 25473862 25473861 + TELIA 141 0.0425 (125/2941) 0 * * Os_TE_703140 Chr11 25469979 25469758 + ORSgTETNOOT02577 232 0.6284 (1608/2559) 1 Intact Os_TE_703137 Os_TE_703137 Chr11 25469749 25469979 + ORSgTETNOOT01791 245 0.7633 (1622/2125) 1 Intact Os_TE_703140 Os_TE_703136 Chr11 25469724 25469725 - YOUREN 286 0.4643 (1354/2916) 0 * * Os_TE_703133 Chr11 25469440 25469439 - RIREX_LTR 8828 0.1846 (529/2866) 0 * * Os_TE_703127 Chr11 25464574 25464573 + COPI1_LTR 4721 0.0017 (5/2993) 0 * * Os_TE_703125 Chr11 25463037 25463036 + TRUNCATOR 2918 0.0685 (198/2889) 0 * * Os_TE_703095 Chr11 25443146 25443147 + STOWAWAY50_OS 174 0.0003 (1/2980) 0 * * Os_TE_703092 Chr11 25440439 25440440 + RETRO1_LTR 8314 0.0581 (173/2977) 0 * Os_TE_703091 Os_TE_703091 Chr11 25440435 25440434 - RETRO1_LTR 8314 0.0584 (174/2979) 0 * Os_TE_703092 Os_TE_703082 Chr11 25434703 25434702 + ENSPM4_OS 11610 0.0195 (58/2982) 0 * * Os_TE_703080 Chr11 25431516 25431515 + OSTE20 496 0.0095 (28/2945) 0 * * Os_TE_703079 Chr11 25430169 25430170 - OSTE20 496 0.0096 (28/2919) 0 * * Os_TE_703069 Chr11 25426103 25426102 + NDNA1TNA_OS 334 0.0137 (41/2992) 0 * Os_TE_703068 Os_TE_703068 Chr11 25426102 25426103 - ORSgTEMT00100799 337 0.0143 (41/2862) 0 * Os_TE_703069 Os_TE_703037 Chr11 25418313 25418312 + SZLTR 1249 0.0915 (273/2984) 0 * * Os_TE_703034 Chr11 25417154 25403859 + SPMLIKE 10989 0.2059 (584/2836) 1 Intact Os_TE_703031 Os_TE_703031 Chr11 25403859 25417155 - ORSgTETN00200001 10994 0.1962 (553/2818) 1 Intact Os_TE_703034 Os_TE_703030 Chr11 25403750 25403749 + ORSgTETN00200005 1121 0.4816 (1358/2820) 0 * * Os_TE_703023 Chr11 25396327 25396328 - SC-3_LTR 5748 0.0003 (1/2993) 0 * Os_TE_703022 Os_TE_703022 Chr11 25396323 25396322 + ORSiTERTOOT00296 5553 0.0003 (1/2992) 0 * Os_TE_703023 Os_TE_702983 Chr11 25387873 25387874 + ORSiCMCM00100019 2717 0.0648 (194/2994) 0 * Os_TE_702982 Os_TE_702982 Chr11 25387869 25387868 - TRUNCATOR2_LTR 2904 0.0648 (194/2996) 0 * Os_TE_702983 Os_TE_702981 Chr11 25387861 25387860 + DS-RICE3N 525 0.0039 (11/2818) 0 * * Os_TE_702971 Chr11 25383147 25370238 + RETRO2A_LTR 12895 0.2073 (588/2836) 1 Intact Os_TE_702968 Os_TE_702968 Chr11 25370238 25383147 - RETRO1_LTR 8314 0.1946 (542/2785) 1 Intact Os_TE_702971 Os_TE_702960 Chr11 25367860 25367976 - ORSgTEMT00500012 128 0.6866 (655/954) 1 Intact * Os_TE_702957 Chr11 25367767 25367768 + STOWAWAY14_OS 258 0.0015 (1/684) 0 * * Os_TE_702953 Chr11 25367413 25367263 - UNIQUE 158 0.7480 (659/881) 1 Intact * Os_TE_702950 Chr11 25366851 25366640 - ORSgTEMT01400019 216 0.6823 (655/960) 1 Intact * Os_TE_702945 Chr11 25366407 25366540 + ORSgTEMT00502544 146 0.7469 (664/889) 1 Intact * Os_TE_702937 Chr11 25363758 25363993 + F569 228 0.7912 (663/838) 1 Intact * Os_TE_702936 Chr11 25363480 25363479 + COWARD-2 350 0.1094 (169/1545) 0 * * Os_TE_702931 Chr11 25360764 25360763 - ORSgTEMT01700947 154 0.0031 (5/1620) 0 * Os_TE_702930 Os_TE_702930 Chr11 25360761 25360762 + ORSgTEMT01700789 143 0.0031 (5/1620) 0 * Os_TE_702931 Os_TE_702929 Chr11 25360454 25360453 - ORSgTEMT01701882 154 0.1093 (176/1610) 0 * * Os_TE_702927 Chr11 25360123 25360124 + SC-1_LTR 6888 0.0735 (119/1619) 0 * * Os_TE_702914 Chr11 25353982 25353727 - STOWAWAY34_OS 256 0.4164 (785/1885) 0.88 Intact * Os_TE_702894 Chr11 25342231 25342232 - ORSiTERTOOT00367 5639 0.0086 (7/812) 0 * Os_TE_702893 Os_TE_702893 Chr11 25342227 25342226 + ORSiTERTOOT00367 5639 0.0086 (7/813) 0 * Os_TE_702894 Os_TE_702859 Chr11 25328325 25328043 + ORSgTEMT04600039 283 0.7488 (611/816) 1 Intact * Os_TE_702839 Chr11 25316094 25316093 - ORSgTEMT01400019 216 0.7449 (1463/1964) 0 * Os_TE_702838 Os_TE_702838 Chr11 25316089 25316090 - ORSgTEMT01400014 209 0.7278 (1329/1826) 0 * Os_TE_702839 Os_TE_702811 Chr11 25305393 25305392 - ORSgTETN00200001 10994 0.0005 (1/1963) 0 * * Os_TE_702809 Chr11 25304330 25304331 + TWIFBIG 3567 0.0097 (1/103) -1 * * Os_TE_702752 Chr11 25294505 25294506 - COPIA2-LTR_OS 6433 0.0887 (141/1590) 0 * * Os_TE_702746 Chr11 25294042 25294043 + STOWAWAY48_OS 261 0.0009 (1/1112) 0 * * Os_TE_702745 Chr11 25291678 25291679 - SZ-22_LTR 4403 0.0005 (1/1997) 0 * Os_TE_702744 Os_TE_702744 Chr11 25291674 25291673 + ORSiTERTOOT00034 791 0.0005 (1/1994) 0 * Os_TE_702745 Os_TE_702743 Chr11 25291611 25291612 - SC-3_LTR 5748 0.0055 (11/1998) 0 * Os_TE_702742 Os_TE_702742 Chr11 25291607 25291606 + ORSiTERTOOT00296 5553 0.0055 (11/2000) 0 * Os_TE_702743 Os_TE_702706 Chr11 25280859 25280614 - ORSgTEMT01400022 212 0.7421 (1226/1652) 1 Intact Os_TE_702704 Os_TE_702704 Chr11 25280612 25280823 - ORSgTEMT01400011 212 0.6248 (1354/2167) 1 Intact Os_TE_702706 Os_TE_702646 Chr11 25264465 25264326 + ORSgTEMT00501356 145 0.6581 (1967/2989) 1 Intact Os_TE_702643 Os_TE_702643 Chr11 25264324 25264460 - ORSgTETNOOT00544 147 0.6560 (1966/2997) 1 Intact Os_TE_702646 Os_TE_702642 Chr11 25263313 25263314 + OSTE33 1012 0.1294 (386/2983) 0 * Os_TE_702641 Os_TE_702641 Chr11 25263304 25263303 + OSTE33 1012 0.1221 (362/2964) 0 * Os_TE_702642 Os_TE_702635 Chr11 25259537 25259538 - COPIA3-LTR_OS 5061 0.0094 (28/2974) 0 * Os_TE_702634 Os_TE_702634 Chr11 25259533 25259532 + COPIA3-LTR_OS 5061 0.0087 (26/2981) 0 * Os_TE_702635 Os_TE_702630 Chr11 25256997 25256998 + OSTE14 885 0.0084 (25/2965) 0 * Os_TE_702629 Os_TE_702629 Chr11 25256996 25256995 + OSTE1 801 0.0098 (29/2963) 0 * Os_TE_702630 Os_TE_702616 Chr11 25254567 25254566 + ORSgTEMT00600192 355 0.0091 (27/2973) 0 * * Os_TE_702609 Chr11 25253734 25253735 - ORSgTEMT00501568 147 0.0003 (1/2951) 0 * * Os_TE_702605 Chr11 25252836 25252837 - TNR2A 152 0.0375 (73/1947) -1 * Os_TE_702604 Os_TE_702604 Chr11 25252823 25252822 + TNR2A 152 0.0403 (78/1934) -1 * Os_TE_702605 Os_TE_702603 Chr11 25252384 25252385 - RETROSAT2LTR 12796 0.0134 (6/447) -1 * * Os_TE_702600 Chr11 25250974 25250973 - ORSgTEMT02400246 177 0.0368 (110/2993) 0 * Os_TE_702599 Os_TE_702599 Chr11 25250970 25250971 - ORSgTEMT02400092 225 0.0361 (108/2994) 0 * Os_TE_702600 Os_TE_702596 Chr11 25248101 25248102 + ORSiTERTOOT00296 5553 0.0003 (1/2979) 0 * Os_TE_702595 Os_TE_702595 Chr11 25248097 25248096 - SC-3_LTR 5748 0.0003 (1/2972) 0 * Os_TE_702596 Os_TE_702581 Chr11 25244828 25244829 + RETROSAT4_LTR 13504 0.4202 (1063/2530) 0 * * Os_TE_702564 Chr11 25238275 25238276 - SC-8_LTR 4951 0.0010 (2/1993) 0 * Os_TE_702563 Os_TE_702563 Chr11 25238271 25238270 + SC-8_LTR 4951 0.0010 (2/1993) 0 * Os_TE_702564 Os_TE_702525 Chr11 25224110 25224109 + ORSgTEMT01400032 215 0.3460 (1014/2931) 0 * * Os_TE_702523 Chr11 25224063 25224064 + ORSgTETNOOT00908 242 0.0003 (1/2986) 0 * * Os_TE_702520 Chr11 25221558 25221557 + ORSgTEMT00500201 140 0.5541 (1649/2976) 0 * * Os_TE_702509 Chr11 25217017 25217018 - ORSgTEMT04200023 393 0.0010 (3/2926) 0 * * Os_TE_702504 Chr11 25214483 25214484 - SC-3_LTR 5748 0.0003 (1/2992) 0 * Os_TE_702503 Os_TE_702503 Chr11 25214479 25214478 + ORSiTERTOOT00296 5553 0.0003 (1/2998) 0 * Os_TE_702504 Os_TE_702497 Chr11 25210428 25210429 + OSTE33 1012 0.0007 (2/2835) 0 * Os_TE_702496 Os_TE_702496 Chr11 25210419 25210418 + OSTE33 1012 0.0004 (1/2857) 0 * Os_TE_702497 Os_TE_702486 Chr11 25208986 25208985 - STOWAWAY51_OS 246 0.0003 (1/2989) 0 * Os_TE_702485 Os_TE_702485 Chr11 25208980 25208981 + STOWAWAY51_OS 246 0.0003 (1/2975) 0 * Os_TE_702486 Os_TE_702481 Chr11 25208205 25207966 - ORSgTETNOOT02565 240 0.3393 (1011/2980) 1 Intact * Os_TE_702475 Chr11 25207722 25207962 + ORSgTETNOOT00012 241 0.3381 (1008/2981) 1 Intact * Os_TE_702463 Chr11 25205992 25205993 - ORSgTEMT00101129 160 0.0003 (1/2985) 0 * * Os_TE_702443 Chr11 25191622 25191623 + OSTE20 496 0.0179 (53/2960) 0 * * Os_TE_702435 Chr11 25188974 25188975 - TYPEM 227 0.0024 (7/2927) 0 * Os_TE_702434 Os_TE_702434 Chr11 25188973 25188972 - ORSgTEMT02400179 221 0.0024 (7/2931) 0 * Os_TE_702435 Os_TE_702433 Chr11 25188605 25188606 - OSTE28 298 0.0014 (4/2869) 0 * Os_TE_702432 Os_TE_702432 Chr11 25188597 25188596 - OSTE28 298 0.0017 (5/2872) 0 * Os_TE_702433 Os_TE_702425 Chr11 25186756 25186755 - COPIA2-LTR_OS 6433 0.0003 (1/2965) 0 * * Os_TE_702417 Chr11 25184200 25184201 - ORSgTEMT02400179 221 0.0720 (215/2988) 0 * Os_TE_702416 Os_TE_702416 Chr11 25184199 25184198 - TYPEM 227 0.0698 (208/2978) 0 * Os_TE_702417 Os_TE_702412 Chr11 25180024 25180023 + RIREX_LTR 8828 0.0003 (1/2975) 0 * * Os_TE_702411 Chr11 25177343 25177344 - RETRO2_LTR 12874 0.0010 (3/2992) 0 * Os_TE_702410 Os_TE_702410 Chr11 25177339 25177338 + RETRO2_LTR 12874 0.0010 (3/2989) 0 * Os_TE_702411 Os_TE_702409 Chr11 25176567 25176568 + RIREX_LTR 8828 0.0004 (1/2854) 0 * Os_TE_702408 Os_TE_702408 Chr11 25176563 25176562 - RIREX_LTR 8828 0.0003 (1/2858) 0 * Os_TE_702409 Os_TE_702398 Chr11 25173561 25173562 - RIRE5-LTR_OS 6427 0.0044 (13/2935) 0 * Os_TE_702397 Os_TE_702397 Chr11 25173555 25173554 + RIRE5-LTR_OS 6427 0.0044 (13/2973) 0 * Os_TE_702398 Os_TE_702396 Chr11 25173535 25173536 + OSTONOR1_LTR 6440 0.0987 (295/2989) 0 * Os_TE_702395 Os_TE_702395 Chr11 25173531 25173530 - ORSiTERT00100062 5674 0.0982 (293/2983) 0 * Os_TE_702396 Os_TE_702387 Chr11 25171383 25171382 + NDNA1TNA_OS 334 0.0006 (1/1803) 0 * * Os_TE_702386 Chr11 25171332 25171333 - CPSC4A_LTR 5182 0.0546 (99/1813) 0 * Os_TE_702385 Os_TE_702385 Chr11 25171325 25171324 + CPSC4A_LTR 5182 0.0562 (99/1762) 0 * Os_TE_702386 Os_TE_702363 Chr11 25167749 25167950 - ORSgTEMT02000003 197 0.7285 (2165/2972) 1 Intact * Os_TE_702362 Chr11 25166104 25166103 + ORSgTEMT01602181 239 0.0007 (2/2989) 0 * Os_TE_702361 Os_TE_702361 Chr11 25166101 25166102 - ORSgTEMT01602404 253 0.0007 (2/2987) 0 * Os_TE_702362 Os_TE_702355 Chr11 25164383 25164382 - TYPEM 227 0.2041 (608/2979) 0 * Os_TE_702354 Os_TE_702354 Chr11 25164382 25164383 - ORSgTEMT02400246 177 0.2062 (615/2983) 0 * Os_TE_702355 Os_TE_702327 Chr11 25156759 25156760 + ORSgTEMT01400009 212 0.0004 (1/2836) 0 * * Os_TE_702311 Chr11 25148571 25148570 + ORSgTEMT01601122 212 0.0017 (5/2871) 0 * Os_TE_702310 Os_TE_702310 Chr11 25148570 25148571 + STOWAWAY21_OS 243 0.0007 (2/2914) 0 * Os_TE_702311 Os_TE_702309 Chr11 25148534 25148535 + MERMITEB 1610 0.0014 (4/2910) 0 * * Os_TE_702305 Chr11 25147775 25147776 + ORSgTETNOOT01219 231 0.0195 (53/2716) 0 * Os_TE_702304 Os_TE_702304 Chr11 25147769 25147768 + ORSgTETNOOT00908 242 0.0202 (55/2718) 0 * Os_TE_702305 Os_TE_702300 Chr11 25145881 25145880 - ORSgTETNOOT02000 263 0.0080 (24/2995) 0 * * Os_TE_702298 Chr11 25143380 25143379 - EnSpm-10_OS 11265 0.0003 (1/2990) 0 * * Os_TE_702297 Chr11 25143292 25143293 - RETROSAT2LTRA 3112 0.0017 (5/2989) 0 * Os_TE_702296 Os_TE_702296 Chr11 25143288 25143287 + RETROSAT3_LTR 11537 0.0017 (5/2989) 0 * Os_TE_702297 Os_TE_702291 Chr11 25142609 25142608 + RIREX_LTR 8828 0.0003 (1/2977) 0 * * Os_TE_702278 Chr11 25139992 25139993 + ORSgTEMT01602181 239 0.0016 (4/2573) 0 * * Os_TE_702277 Chr11 25139545 25139544 + CACTA-B 1103 0.0004 (1/2603) 0 * * Os_TE_702271 Chr11 25136703 25136702 + STOWAWAY9_OS 235 0.0037 (10/2739) 0 * Os_TE_702270 Os_TE_702270 Chr11 25136702 25136703 + ORSgTEMT01400031 216 0.0036 (10/2780) 0 * Os_TE_702271 Os_TE_702268 Chr11 25133464 25133465 + COPIA2-LTR_OS 6433 0.0050 (15/2985) 0 * Os_TE_702267 Os_TE_702267 Chr11 25133460 25133459 - COPIA2-LTR_OS 6433 0.0054 (16/2983) 0 * Os_TE_702268 Os_TE_702266 Chr11 25132623 25132624 + SPMLIKE 10989 0.0003 (1/2998) 0 * Os_TE_702265 Os_TE_702265 Chr11 25132621 25132620 - ORSgTETN00200001 10994 0.0003 (1/2999) 0 * Os_TE_702266 Os_TE_702260 Chr11 25130275 25130276 + SEVERIN-2 1952 0.0050 (15/2984) 0 * * Os_TE_702259 Chr11 25130043 25130044 - COPIA1-LTR_OS 9292 0.0007 (2/2976) 0 * Os_TE_702258 Os_TE_702258 Chr11 25130039 25130038 + COPIA1-LTR_OS 9292 0.0007 (2/2982) 0 * Os_TE_702259 Os_TE_702257 Chr11 25129964 25129965 - ENSPM3_OS 10837 0.0017 (5/2982) 0 * Os_TE_702256 Os_TE_702256 Chr11 25129962 25129961 - TNR3 1536 0.0017 (5/2981) 0 * Os_TE_702257 Os_TE_702254 Chr11 25128232 25128231 - ORSgTEMT01601696 238 0.0007 (2/2911) 0 * * Os_TE_702249 Chr11 25126474 25126475 - RIREX_LTR 8828 0.0050 (15/2973) 0 * Os_TE_702248 Os_TE_702248 Chr11 25126470 25126469 + RIREX_LTR 8828 0.0051 (15/2969) 0 * Os_TE_702249 Os_TE_702241 Chr11 25124279 25124280 - ORSgTEMT01602170 250 0.0024 (7/2914) 0 * * Os_TE_702234 Chr11 25123567 25123566 + ENSPM4_OS 11610 0.2024 (597/2949) 0 * * Os_TE_702232 Chr11 25122759 25122760 + SZ-48LTR 3632 0.0003 (1/2940) 0 * * Os_TE_702229 Chr11 25121936 25121935 + RETROSAT4_LTR 13504 0.0010 (3/2970) 0 * * Os_TE_702226 Chr11 25121532 25121531 - MERMITE18D 1491 0.0151 (45/2982) 0 * * Os_TE_702222 Chr11 25120024 25120023 + COPI2_LTR 4733 0.0003 (1/2968) 0 * * Os_TE_702200 Chr11 25110056 25110055 + ORSiCMCM00100019 2717 0.0464 (135/2910) 0 * * Os_TE_702186 Chr11 25099462 25099461 + ORSgTEMT00901798 232 0.0027 (8/2975) 0 * Os_TE_702185 Os_TE_702185 Chr11 25099458 25099459 - ORSgTEMT00900099 250 0.0027 (8/2968) 0 * Os_TE_702186 Os_TE_702182 Chr11 25098894 25098895 - RETROSAT4_LTR 13504 0.0017 (5/2980) 0 * Os_TE_702181 Os_TE_702181 Chr11 25098890 25098889 + RETROSAT4_LTR 13504 0.0013 (4/2979) 0 * Os_TE_702182 Os_TE_702180 Chr11 25098418 25098419 + COPIA1-LTR_OS 9292 0.0027 (8/2985) 0 * Os_TE_702179 Os_TE_702179 Chr11 25098414 25098413 - COPIA1-LTR_OS 9292 0.0023 (7/2985) 0 * Os_TE_702180 Os_TE_702170 Chr11 25096124 25096125 - MUDRN1_OS 764 0.0118 (35/2975) 0 * * Os_TE_702166 Chr11 25095362 25095361 - RETROSAT4_LTR 13504 0.0003 (1/2954) 0 * * Os_TE_702160 Chr11 25093355 25093356 - COPIA2-LTR_OS 6433 0.0003 (1/2922) 0 * * Os_TE_702151 Chr11 25090922 25090921 - ORSgTETN00200001 10994 0.0003 (1/2985) 0 * * Os_TE_702146 Chr11 25089344 25089345 + RIRE3_LTR 12054 0.0962 (236/2453) 0 * Os_TE_702145 Os_TE_702145 Chr11 25089340 25089339 - RIRE3_LTR 12054 0.1650 (289/1751) 0 * Os_TE_702146 Os_TE_702142 Chr11 25088699 25088698 + RETRO2A_LTR 12895 0.0046 (13/2821) 0 * * Os_TE_702135 Chr11 25085544 25085543 + ENSPM4_OS 11610 0.0007 (2/2797) 0 * * Os_TE_702127 Chr11 25084633 25084634 - SZ-35LTR 3853 0.0007 (2/2963) 0 * * Os_TE_702122 Chr11 25083577 25083576 - SZ-52_LTR 13107 0.0040 (12/2965) 0 * * Os_TE_702119 Chr11 25082866 25082867 - MuDR4_OS 7610 0.1362 (405/2973) 0 * Os_TE_702118 Os_TE_702118 Chr11 25082860 25082859 - MuDR4_OS 7610 0.1355 (399/2945) 0 * Os_TE_702119 Os_TE_702113 Chr11 25082330 25082329 - RETROSAT4_LTR 13504 0.1397 (414/2963) 0 * * Os_TE_702092 Chr11 25078490 25078491 - ORSgTERT00201216 11284 0.0460 (132/2867) 0 * * Os_TE_702080 Chr11 25065941 25064854 - RETRO1_LTR 8314 0.2189 (631/2882) 1 Solo_LTR * Os_TE_702070 Chr11 25049710 25049711 + RETROSAT4_LTR 13504 0.0042 (12/2830) 0 * * Os_TE_702065 Chr11 25048871 25048872 + SPMLIKE 10989 0.0356 (103/2895) 0 * Os_TE_702064 Os_TE_702064 Chr11 25048869 25048868 - ORSgTETN00200001 10994 0.0336 (97/2891) 0 * Os_TE_702065 Os_TE_702061 Chr11 25047769 25047770 - RIREX_LTR 8828 0.0042 (12/2891) 0 * Os_TE_702060 Os_TE_702060 Chr11 25047765 25047764 + RIREX_LTR 8828 0.0041 (12/2901) 0 * Os_TE_702061 Os_TE_702002 Chr11 25026250 25026249 + SPMLIKE 10989 0.0007 (2/2802) 0 * * Os_TE_702001 Chr11 25025595 25025596 - ORSgTETN00200001 10994 0.0007 (2/2825) 0 * * Os_TE_701947 Chr11 25010748 25010747 - ORSgTEMT00100854 331 0.0004 (1/2576) 0 * * Os_TE_701946 Chr11 25010709 25009914 + CACTA-G1 797 0.2314 (654/2826) 1 Intact * Os_TE_701937 Chr11 25007715 25007716 + SPMLIKE 10989 0.0541 (152/2808) 0 * Os_TE_701936 Os_TE_701936 Chr11 25007713 25007712 - ORSgTETN00200001 10994 0.0466 (128/2746) 0 * Os_TE_701937 Os_TE_701935 Chr11 25007137 25007138 - SPMLIKE 10989 0.0004 (1/2819) 0 * Os_TE_701934 Os_TE_701934 Chr11 25007135 25007134 + SPMLIKE 10989 0.0004 (1/2820) 0 * Os_TE_701935 Os_TE_701898 Chr11 25003065 25003064 - GYPSY-A_LTR 8951 0.0839 (223/2658) 0 * * Os_TE_701873 Chr11 24991638 24991639 + OLO24 345 0.0084 (25/2979) 0 * Os_TE_701872 Os_TE_701872 Chr11 24991636 24991635 - OLO24 345 0.0084 (25/2981) 0 * Os_TE_701873 Os_TE_701867 Chr11 24991441 24991442 + ORSgTEMT01400031 216 0.0391 (116/2964) 0 * * Os_TE_701862 Chr11 24990726 24990727 - STOWAWAY17_OS 259 0.0057 (17/2961) 0 * Os_TE_701861 Os_TE_701861 Chr11 24990725 24990724 - ORSgTETNOOT01413 258 0.0054 (16/2956) 0 * Os_TE_701862 Os_TE_701860 Chr11 24990108 24990107 + ORSgTEMT01601591 242 0.0007 (2/2950) 0 * Os_TE_701859 Os_TE_701859 Chr11 24990102 24990103 + STOWAWAY51_OS 246 0.0003 (1/2947) 0 * Os_TE_701860 Os_TE_701848 Chr11 24988247 24988246 - ORSgTEMT01701858 154 0.0084 (24/2860) 0 * * Os_TE_701831 Chr11 24983082 24983083 + COPIA2-LTR_OS 6433 0.0007 (2/2995) 0 * Os_TE_701830 Os_TE_701830 Chr11 24983078 24983077 - COPIA2-LTR_OS 6433 0.0007 (2/2995) 0 * Os_TE_701831 Os_TE_701814 Chr11 24973105 24973106 - COPIA2-LTR_OS 6433 0.0162 (45/2784) 0 * * Os_TE_701812 Chr11 24971584 24971585 - COPIA1-LTR_OS 9292 0.0392 (117/2983) 0 * Os_TE_701811 Os_TE_701811 Chr11 24971582 24971581 + SZ-5LTR 1223 0.0409 (122/2982) 0 * Os_TE_701812 Os_TE_701810 Chr11 24971486 24971487 + ENSPM4_OS 11610 0.0010 (3/2988) 0 * * Os_TE_701783 Chr11 24964720 24964719 - ORSgTEMT02400179 221 0.1548 (445/2875) 0 * Os_TE_701782 Os_TE_701782 Chr11 24964715 24964716 + ORSgTEMT02400034 225 0.1640 (473/2884) 0 * Os_TE_701783 Os_TE_701781 Chr11 24964657 24964656 - ORSgTEMT02400246 177 0.0450 (126/2800) 0 * Os_TE_701780 Os_TE_701780 Chr11 24964656 24964657 - TYPEM 227 0.0443 (126/2842) 0 * Os_TE_701781 Os_TE_701778 Chr11 24963184 24963183 + STOWAWAY1_OS 149 0.0017 (5/2871) 0 * Os_TE_701777 Os_TE_701777 Chr11 24963183 24963184 - ORSgTEMT01702177 127 0.0014 (4/2843) 0 * Os_TE_701778 Os_TE_701775 Chr11 24961281 24961282 + RIRE5-LTR_OS 6427 0.0074 (22/2977) 0 * Os_TE_701774 Os_TE_701774 Chr11 24961274 24961273 - RIRE5-LTR_OS 6427 0.0081 (24/2976) 0 * Os_TE_701775 Os_TE_701773 Chr11 24960852 24960853 + RIREX_LTR 8828 0.0003 (1/2899) 0 * Os_TE_701772 Os_TE_701772 Chr11 24960848 24960847 - RIREX_LTR 8828 0.0003 (1/2894) 0 * Os_TE_701773 Os_TE_701771 Chr11 24960435 24960436 - SZ-35LTR 3853 0.0007 (2/2962) 0 * * Os_TE_701768 Chr11 24960194 24960195 - SPMLIKE 10989 0.0003 (1/2978) 0 * Os_TE_701767 Os_TE_701767 Chr11 24960190 24960189 + SPMLIKE 10989 0.0003 (1/2972) 0 * Os_TE_701768 Os_TE_701763 Chr11 24958562 24954657 - RETROSAT4_LTR 13504 0.8684 (2586/2978) 1 Solo_LTR Os_TE_701759 Os_TE_701759 Chr11 24954659 24958554 + RETROSAT4_LTR 13504 0.8674 (2570/2963) 1 Solo_LTR Os_TE_701763 Os_TE_701756 Chr11 24950474 24950473 + NDNA1TNA_OS 334 0.0497 (148/2980) 0 * Os_TE_701755 Os_TE_701755 Chr11 24950471 24950472 - NDNA1TNA_OS 334 0.0493 (147/2982) 0 * Os_TE_701756 Os_TE_701754 Chr11 24949799 24949800 + COPI2_LTR 4733 0.0003 (1/2960) 0 * * Os_TE_701733 Chr11 24937569 24937568 + RETROSAT4_LTR 13504 0.0043 (13/2997) 0 * * Os_TE_701729 Chr11 24936339 24936338 + HELITRON7_OS 10153 0.0678 (202/2981) 0 * Os_TE_701728 Os_TE_701728 Chr11 24936333 24936334 - HELITRON7_OS 10153 0.0662 (197/2976) 0 * Os_TE_701729 Os_TE_701716 Chr11 24935124 24935123 + WUWU 113 0.0803 (238/2965) 0 * * Os_TE_701711 Chr11 24930261 24930262 - OSR3_LTR 5201 0.0690 (205/2973) 0 * Os_TE_701710 Os_TE_701710 Chr11 24930257 24930256 + OSR3_LTR 5201 0.0697 (207/2971) 0 * Os_TE_701711 Os_TE_701706 Chr11 24926966 24926967 - ORSgTETN00200001 10994 0.0018 (5/2785) 0 * Os_TE_701705 Os_TE_701705 Chr11 24926964 24926963 + SPMLIKE 10989 0.0014 (4/2790) 0 * Os_TE_701706 Os_TE_701694 Chr11 24923857 24923858 + Hopscotch_LTR 4876 0.0673 (201/2985) 0 * Os_TE_701693 Os_TE_701693 Chr11 24923853 24923852 - Hopscotch_LTR 4876 0.0666 (199/2986) 0 * Os_TE_701694 Os_TE_701672 Chr11 24920213 24920212 + ORSgTETNOOT00032 218 0.0013 (4/2993) 0 * * Os_TE_701665 Chr11 24917455 24917456 - F770 284 0.0005 (1/2015) 0 * Os_TE_701664 Os_TE_701664 Chr11 24917453 24917452 + F770 284 0.0005 (1/2012) 0 * Os_TE_701665 Os_TE_701657 Chr11 24913408 24913409 - SC-3_LTR 5748 0.0003 (1/2996) 0 * Os_TE_701656 Os_TE_701656 Chr11 24913404 24913403 + ORSiTERTOOT00296 5553 0.0003 (1/2996) 0 * Os_TE_701657 Os_TE_701654 Chr11 24911533 24911534 - MuDR4_OS 7610 0.2568 (756/2944) 0 * * Os_TE_701652 Chr11 24911416 24911417 - TYPEM 227 0.0007 (2/2973) 0 * Os_TE_701651 Os_TE_701651 Chr11 24911415 24911414 - ORSgTEMT02400179 221 0.0007 (2/2974) 0 * Os_TE_701652 Os_TE_701640 Chr11 24908802 24908803 - ORSgTEMT00600085 364 0.0347 (103/2966) 0 * Os_TE_701639 Os_TE_701639 Chr11 24908801 24908800 + CASTAWAY 364 0.0387 (108/2791) 0 * Os_TE_701640 Os_TE_701636 Chr11 24908569 24908568 + SPMLIKE 10989 0.0003 (1/2987) 0 * * Os_TE_701635 Chr11 24908540 24908541 - RIRE2_LTR 11306 0.0013 (4/2984) 0 * Os_TE_701634 Os_TE_701634 Chr11 24908536 24908535 + RIRE2_LTR 11306 0.0013 (4/2986) 0 * Os_TE_701635 Os_TE_701588 Chr11 24893323 24893324 + RIRE3_LTR 12054 0.0003 (1/2947) 0 * Os_TE_701587 Os_TE_701587 Chr11 24893319 24893318 - RIRE3_LTR 12054 0.0007 (2/2976) 0 * Os_TE_701588 Os_TE_701586 Chr11 24893164 24893165 + RIREX_LTR 8828 0.0037 (11/2975) 0 * Os_TE_701585 Os_TE_701585 Chr11 24893160 24893159 - RIREX_LTR 8828 0.0097 (11/1131) 0 * Os_TE_701586 Os_TE_701584 Chr11 24892810 24892811 + ORSgTETNOOT00012 241 0.0014 (4/2962) 0 * Os_TE_701583 Os_TE_701583 Chr11 24892808 24892807 + ORSgTETNOOT00908 242 0.0017 (5/2911) 0 * Os_TE_701584 Os_TE_701576 Chr11 24891720 24891721 - TRUNCATOR2_LTR 2904 0.0040 (11/2763) 0 * * Os_TE_701559 Chr11 24888169 24888168 - SZ-22_LTR 4403 0.0003 (1/2989) 0 * * Os_TE_701532 Chr11 24880372 24880373 + RIREX_LTR 8828 0.0037 (11/2992) 0 * Os_TE_701531 Os_TE_701531 Chr11 24880368 24880367 - RIREX_LTR 8828 0.0037 (11/2992) 0 * Os_TE_701532 Os_TE_701530 Chr11 24879992 24879993 + RIRE3_LTR 12054 0.0361 (108/2993) 0 * Os_TE_701529 Os_TE_701529 Chr11 24879988 24879987 - RIRE3_LTR 12054 0.0351 (105/2992) 0 * Os_TE_701530 Os_TE_701528 Chr11 24879982 24879983 + RIRE3_LTR 12054 0.0355 (106/2984) 0 * * Os_TE_701499 Chr11 24871956 24871955 - TRUNCATOR2_LTR 2904 0.5265 (1559/2961) 0 * * Os_TE_701453 Chr11 24863069 24863068 - RETROSAT2LTRA 3112 0.0008 (2/2390) 0 * * Os_TE_701440 Chr11 24855996 24855997 - Cassandra_OS-LTR 764 0.0643 (145/2256) 0 * * Os_TE_701414 Chr11 24848797 24848798 - TRUNCATOR2_LTR 2904 0.0230 (68/2952) 0 * Os_TE_701413 Os_TE_701413 Chr11 24848793 24848792 + ORSiTERTOOT00028 8600 0.0230 (68/2953) 0 * Os_TE_701414 Os_TE_701409 Chr11 24845540 24845541 - SZ-67LTR 1540 0.0037 (11/2958) 0 * * Os_TE_701406 Chr11 24843485 24843486 - MPING 430 0.0003 (1/2957) 0 * Os_TE_701405 Os_TE_701405 Chr11 24843483 24843482 + MPING 430 0.0003 (1/2947) 0 * Os_TE_701406 Os_TE_701398 Chr11 24837577 24837578 + ORSiCMCM00100019 2717 0.0003 (1/2993) 0 * Os_TE_701397 Os_TE_701397 Chr11 24837573 24837572 - TRUNCATOR2_LTR 2904 0.0003 (1/2992) 0 * Os_TE_701398 Os_TE_701396 Chr11 24837386 24837385 + CACTA-B 1103 0.1170 (349/2984) 0 * Os_TE_701395 Os_TE_701395 Chr11 24837385 24837386 - ORSgTETN00200001 10994 0.1124 (334/2972) 0 * Os_TE_701396 Os_TE_701394 Chr11 24837208 24837207 + SEVERIN-2 1952 0.0037 (11/2980) 0 * * Os_TE_701393 Chr11 24835367 24835366 + ORSgTEMT01601934 207 0.0241 (72/2990) 0 * Os_TE_701392 Os_TE_701392 Chr11 24835364 24835365 + ORSgTEMT01601934 207 0.0248 (74/2980) 0 * Os_TE_701393 Os_TE_701385 Chr11 24834053 24834052 + RETROSAT4_LTR 13504 0.6201 (1810/2919) 0 * * Os_TE_701383 Chr11 24832517 24832518 - RIRE2_LTR 11306 0.0242 (72/2974) 0 * * Os_TE_701381 Chr11 24832507 24832508 + ORSiTERTOOT00027 10853 0.0034 (10/2980) 0 * * Os_TE_701373 Chr11 24827051 24827052 + ORSgTETNOOT00032 218 0.1324 (394/2976) 0 * * Os_TE_701372 Chr11 24826729 24826730 + ORSgTEMT01602181 239 0.0449 (125/2787) 0 * Os_TE_701371 Os_TE_701371 Chr11 24826726 24826725 + ORSgTEMT01602181 239 0.0442 (123/2785) 0 * Os_TE_701372 Os_TE_701369 Chr11 24826386 24826387 + HARB-1_OS 5166 0.0077 (23/2980) 0 * * Os_TE_701356 Chr11 24813460 24813461 + COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_701355 Os_TE_701355 Chr11 24813456 24813455 - COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_701356 Os_TE_701344 Chr11 24810880 24810881 + ORSgTEMT01600402 237 0.0013 (4/2976) 0 * * Os_TE_701341 Chr11 24809432 24809431 - COPI2_LTR 4733 0.0003 (1/2939) 0 * * Os_TE_701328 Chr11 24808119 24808118 + SPMLIKE 10989 0.0017 (5/2986) 0 * * Os_TE_701327 Chr11 24807740 24807739 + RETROSAT4_LTR 13504 0.0007 (2/2957) 0 * * Os_TE_701322 Chr11 24806844 24806843 + ORSgTETNOOT00908 242 0.5613 (1667/2970) 0 * * Os_TE_701292 Chr11 24801074 24801073 + ORSgTETNOOT00032 218 0.0017 (5/2877) 0 * * Os_TE_701261 Chr11 24797207 24797208 - RIREX_LTR 8828 0.0225 (67/2984) 0 * Os_TE_701260 Os_TE_701260 Chr11 24797203 24797202 + RIREX_LTR 8828 0.0225 (67/2982) 0 * Os_TE_701261 Os_TE_701259 Chr11 24796987 24796988 + COPI2_LTR 4733 0.0003 (1/2960) 0 * Os_TE_701258 Os_TE_701258 Chr11 24796983 24796982 - COPI2_LTR 4733 0.0003 (1/2968) 0 * Os_TE_701259 Os_TE_701257 Chr11 24796599 24796598 - TRUNCATOR 2918 0.0017 (5/2973) 0 * Os_TE_701256 Os_TE_701256 Chr11 24796597 24796598 + TRUNCATOR 2918 0.0017 (5/2972) 0 * Os_TE_701257 Os_TE_701248 Chr11 24793920 24793921 - RETROSAT4_LTR 13504 0.0004 (1/2851) 0 * Os_TE_701247 Os_TE_701247 Chr11 24793916 24793915 + RETROSAT4_LTR 13504 0.0004 (1/2852) 0 * Os_TE_701248 Os_TE_701241 Chr11 24793445 24793444 - RETROSAT2LTR 12796 0.0030 (9/2987) 0 * * Os_TE_701225 Chr11 24788945 24788946 + SPMLIKE 10989 0.0014 (3/2071) 0 * * Os_TE_701211 Chr11 24785483 24785482 + ORSgTEMT01601591 242 0.0551 (162/2942) 0 * Os_TE_701210 Os_TE_701210 Chr11 24785477 24785478 + STOWAWAY51_OS 246 0.0354 (102/2885) 0 * Os_TE_701211 Os_TE_701185 Chr11 24780493 24780494 - ORSgTETN00200001 10994 0.0003 (1/2952) 0 * Os_TE_701184 Os_TE_701184 Chr11 24780491 24780490 + SPMLIKE 10989 0.0003 (1/2950) 0 * Os_TE_701185 Os_TE_701180 Chr11 24778749 24778750 - SZ-35LTR 3853 0.0144 (43/2985) 0 * * Os_TE_701179 Chr11 24777724 24773848 + RETROSAT4_LTR 13504 0.3795 (1124/2962) 1 Solo_LTR Os_TE_701173 Os_TE_701173 Chr11 24773846 24777724 - RETROSAT4_LTR 13504 0.2842 (737/2593) 1 Solo_LTR Os_TE_701179 Os_TE_701164 Chr11 24771334 24771333 - ENSPM4_OS 11610 0.0021 (6/2898) 0 * * Os_TE_701162 Chr11 24770739 24770740 + RIREX_LTR 8828 0.0003 (1/2989) 0 * Os_TE_701161 Os_TE_701161 Chr11 24770735 24770734 - RIREX_LTR 8828 0.0003 (1/2988) 0 * Os_TE_701162 Os_TE_701155 Chr11 24768531 24768530 - ORSgTEMT01601432 239 0.0034 (10/2982) 0 * Os_TE_701154 Os_TE_701154 Chr11 24768528 24768529 + ORSgTEMT01602181 239 0.0040 (12/2978) 0 * Os_TE_701155 Os_TE_701152 Chr11 24766549 24766548 + MPING 430 0.0003 (1/2957) 0 * * Os_TE_701148 Chr11 24765956 24765957 - COPIA2-LTR_OS 6433 0.0458 (137/2991) 0 * Os_TE_701147 Os_TE_701147 Chr11 24765952 24765951 + COPIA2-LTR_OS 6433 0.0436 (130/2985) 0 * Os_TE_701148 Os_TE_701146 Chr11 24765884 24765885 + SPMLIKE 10989 0.0003 (1/2992) 0 * Os_TE_701145 Os_TE_701145 Chr11 24765882 24765881 - ORSgTETN00200001 10994 0.0003 (1/2991) 0 * Os_TE_701146 Os_TE_701143 Chr11 24765465 24765466 - ORSgTETN00200001 10994 0.0003 (1/2984) 0 * Os_TE_701142 Os_TE_701142 Chr11 24765463 24765462 + SPMLIKE 10989 0.0003 (1/2985) 0 * Os_TE_701143 Os_TE_701141 Chr11 24765080 24765081 + ENSPM4_OS 11610 0.0219 (65/2970) 0 * * Os_TE_701128 Chr11 24761479 24761478 + RIRE2_LTR 11306 0.0080 (24/2997) 0 * * Os_TE_701116 Chr11 24754882 24754883 - SZ-35LTR 3853 0.0007 (2/2760) 0 * * Os_TE_701114 Chr11 24754769 24754768 + Cassandra_OS-LTR 764 0.0099 (15/1513) 0 * * Os_TE_701109 Chr11 24753227 24753228 + Cassandra_OS-LTR 764 0.0592 (175/2954) 0 * * Os_TE_701100 Chr11 24750078 24750077 - RETROSAT2LTR 12796 0.0010 (3/2985) 0 * * Os_TE_701090 Chr11 24744478 24744479 - RETRO2A_LTR 12895 0.0017 (5/2993) 0 * * Os_TE_701062 Chr11 24737973 24737974 - SZ-35LTR 3853 0.0015 (4/2652) 0 * * Os_TE_701059 Chr11 24737913 24737914 + TRUNCATOR 2918 0.0257 (72/2801) 0 * * Os_TE_701050 Chr11 24733831 24733830 + JOUZHEN 596 0.0051 (15/2921) 0 * * Os_TE_701044 Chr11 24731025 24731026 - OSTE20 496 0.0003 (1/2976) 0 * * Os_TE_701035 Chr11 24724886 24724887 - ORSgTERT00201216 11284 0.0003 (1/2936) 0 * * Os_TE_701031 Chr11 24724130 24724129 + COPIA2-LTR_OS 6433 0.0007 (2/2985) 0 * * Os_TE_701027 Chr11 24723321 24723322 + RETROSAT4_LTR 13504 0.0294 (88/2990) 0 * Os_TE_701026 Os_TE_701026 Chr11 24723317 24723316 - SZ-35LTR 3853 0.0301 (90/2986) 0 * Os_TE_701027 Os_TE_701023 Chr11 24722892 24722891 + RIRE2_LTR 11306 0.0007 (1/1370) 0 * * Os_TE_701006 Chr11 24719563 24719564 - ORSgTETN00200001 10994 0.0014 (2/1399) 0 * * Os_TE_701004 Chr11 24718787 24718788 + GYPSY-B_LTR 7068 0.0010 (3/2990) 0 * * Os_TE_701001 Chr11 24717273 24717274 - ORSgTETN00200001 10994 0.0010 (3/2986) 0 * * Os_TE_701000 Chr11 24717032 24717033 + SPMLIKE 10989 0.0007 (2/2985) 0 * * Os_TE_700998 Chr11 24716547 24716548 + RIREX_LTR 8828 0.0040 (12/2992) 0 * Os_TE_700997 Os_TE_700997 Chr11 24716543 24716542 - RIREX_LTR 8828 0.0040 (12/2992) 0 * Os_TE_700998 Os_TE_700993 Chr11 24714876 24714877 - COPIA2-LTR_OS 6433 0.0740 (219/2961) 0 * * Os_TE_700986 Chr11 24713768 24713767 - ORSgTETNOOT00908 242 0.0021 (5/2420) 0 * * Os_TE_700975 Chr11 24708541 24708542 + ORSgTETNOOT01668 244 0.1146 (341/2976) 0 * * Os_TE_700972 Chr11 24707932 24707931 + SPMLIKE 10989 0.0010 (3/2998) 0 * Os_TE_700971 Os_TE_700971 Chr11 24707912 24707913 - ORSgTETN00200001 10994 0.0010 (3/2990) 0 * Os_TE_700972 Os_TE_700951 Chr11 24703177 24703178 - ORSgTEMT01601208 238 0.0047 (14/2996) 0 * * Os_TE_700948 Chr11 24700941 24700942 - SZ-48LTR 3632 0.0003 (1/2980) 0 * * Os_TE_700947 Chr11 24700610 24700611 + RIRE2_LTR 11306 0.0004 (1/2648) 0 * Os_TE_700946 Os_TE_700946 Chr11 24700606 24700605 - RIRE2_LTR 11306 0.0004 (1/2646) 0 * Os_TE_700947 Os_TE_700940 Chr11 24684771 24684772 + SZ-62LTR 3649 0.0004 (1/2653) 0 * Os_TE_700939 Os_TE_700939 Chr11 24684767 24684766 - SZ-62LTR 3649 0.0004 (1/2657) 0 * Os_TE_700940 Os_TE_700933 Chr11 24683067 24683068 - MuDR4_OS 7610 0.0638 (173/2710) 0 * Os_TE_700932 Os_TE_700932 Chr11 24683060 24683059 - MuDR4_OS 7610 0.0628 (170/2709) 0 * Os_TE_700933 Os_TE_700931 Chr11 24682794 24682795 - MPING 430 0.0310 (93/2998) 0 * Os_TE_700930 Os_TE_700930 Chr11 24682792 24682791 + MPING 430 0.0310 (93/2998) 0 * Os_TE_700931 Os_TE_700929 Chr11 24682480 24682481 - ORSgTEMT01601493 303 0.0018 (5/2812) 0 * * Os_TE_700928 Chr11 24682235 24682234 + SEVERIN-2 1952 0.0003 (1/2948) 0 * * Os_TE_700927 Chr11 24682092 24682091 - COPIA2-LTR_OS 6433 0.0007 (2/2772) 0 * * Os_TE_700926 Chr11 24680768 24680767 - TRUNCATOR 2918 0.0013 (4/2969) 0 * Os_TE_700925 Os_TE_700925 Chr11 24680767 24680768 + TRUNCATOR 2918 0.0017 (5/2956) 0 * Os_TE_700926 Os_TE_700923 Chr11 24679673 24679674 + DS-RICE2N 613 0.6404 (1898/2964) 0 * * Os_TE_700922 Chr11 24679300 24679301 - SZ-9LTR 965 0.0866 (96/1109) 0 * Os_TE_700921 Os_TE_700921 Chr11 24679296 24679295 + SZ-9LTR 965 0.0857 (97/1132) 0 * Os_TE_700922 Os_TE_700919 Chr11 24678229 24678230 - RIRE3A_LTR 10580 0.0026 (3/1139) 0 * Os_TE_700918 Os_TE_700918 Chr11 24678225 24678224 + ORSiTERTOOT00027 10853 0.0017 (2/1144) 0 * Os_TE_700919 Os_TE_700909 Chr11 24675465 24675262 - ORSgTEMT01601942 222 0.2071 (169/816) 1 Intact * Os_TE_700904 Chr11 24674498 24674499 + ORSgTEMT01600662 238 0.8584 (958/1116) 0 * * Os_TE_700903 Chr11 24674287 24674288 - RPO_OS 1983 0.5349 (1220/2281) 0 * * Os_TE_700901 Chr11 24669659 24669660 + RIREX_LTR 8828 0.0013 (4/2998) 0 * Os_TE_700900 Os_TE_700900 Chr11 24669655 24669654 - RIREX_LTR 8828 0.0013 (4/2998) 0 * Os_TE_700901 Os_TE_700899 Chr11 24668506 24668505 - SZ-54_LTR 5203 0.0003 (1/2993) 0 * * Os_TE_700898 Chr11 24668338 24668337 + ORSgTEMT00500201 140 0.7642 (2006/2625) 0 * * Os_TE_700897 Chr11 24667970 24667971 + COPIA1-LTR_OS 9292 0.7840 (2225/2838) 0 * Os_TE_700896 Os_TE_700896 Chr11 24667966 24667965 - COPIA1-LTR_OS 9292 0.6835 (1354/1981) 0 * Os_TE_700897 Os_TE_700891 Chr11 24663895 24663896 - ORSiTETNOOT00156 3648 0.0010 (3/2920) 0 * Os_TE_700890 Os_TE_700890 Chr11 24663888 24663887 + TWIFBIG 3567 0.0010 (3/2885) 0 * Os_TE_700891 Os_TE_700874 Chr11 24660060 24660059 + ORSgTEMT00901844 250 0.0081 (24/2959) 0 * Os_TE_700873 Os_TE_700873 Chr11 24660056 24660057 + ORSgTEMT00900913 260 0.0078 (23/2964) 0 * Os_TE_700874 Os_TE_700863 Chr11 24654238 24654237 + F1275 157 0.0007 (2/2989) 0 * * Os_TE_700859 Chr11 24648019 24648020 + DS-RICE3N 525 0.0471 (132/2803) 0 * * Os_TE_700854 Chr11 24647345 24647346 + ORSgTEMT00101341 314 0.0471 (140/2970) 0 * * Os_TE_700853 Chr11 24645782 24645783 + ORSiTERTOOT00296 5553 0.0003 (1/2984) 0 * Os_TE_700852 Os_TE_700852 Chr11 24645778 24645777 - SC-3_LTR 5748 0.0003 (1/2987) 0 * Os_TE_700853 Os_TE_700846 Chr11 24642412 24642411 - ORSgTEMT01601432 239 0.0584 (162/2775) 0 * * Os_TE_700843 Chr11 24638377 24638378 - TYPEM 227 0.0004 (1/2730) 0 * * Os_TE_700840 Chr11 24637100 24637099 + MDR2 6967 0.0054 (16/2979) 0 * * Os_TE_700839 Chr11 24637061 24637060 + STOWAWAY1_OS 149 0.0015 (2/1371) 0 * * Os_TE_700838 Chr11 24636987 24636986 + MDR2 6967 0.0096 (23/2392) 0 * * Os_TE_700830 Chr11 24636315 24636316 + MDR2 6967 0.0054 (16/2960) 0 * * Os_TE_700829 Chr11 24635943 24635942 + TELIA 141 0.0003 (1/2982) 0 * * Os_TE_700825 Chr11 24634501 24634500 + ORSgTETNOOT00908 242 0.0003 (1/2972) 0 * * Os_TE_700814 Chr11 24632963 24632964 + ORSgTEMT01602275 229 0.0010 (3/2858) 0 * * Os_TE_700806 Chr11 24626721 24626720 + ENSPM4_OS 11610 0.0015 (4/2747) -1 * * Os_TE_700802 Chr11 24625795 24625796 + RIREX_LTR 8828 0.0007 (2/2963) 0 * Os_TE_700801 Os_TE_700801 Chr11 24625791 24625790 - RIREX_LTR 8828 0.0007 (2/2962) 0 * Os_TE_700802 Os_TE_700800 Chr11 24625494 24625495 - RIREX_LTR 8828 0.0003 (1/2963) 0 * Os_TE_700799 Os_TE_700799 Chr11 24625490 24625489 + RIREX_LTR 8828 0.0003 (1/2961) 0 * Os_TE_700800 Os_TE_700798 Chr11 24625447 24625446 + ENSPM4_OS 11610 0.0014 (4/2955) 0 * * Os_TE_700796 Chr11 24624748 24624747 - MIDWAY 985 0.0671 (197/2937) 0 * * Os_TE_700794 Chr11 24624280 24624279 - MUDRN4_OS 332 0.0011 (3/2646) 0 * * Os_TE_700793 Chr11 24624241 24624240 + SEVERIN-2 1952 0.0019 (5/2654) 0 * * Os_TE_700792 Chr11 24624177 24624178 + AMYLTP 383 0.0611 (162/2652) 0 * Os_TE_700791 Os_TE_700791 Chr11 24624173 24624172 - AMYLTP 383 0.0596 (158/2652) 0 * Os_TE_700792 Os_TE_700787 Chr11 24623197 24623196 - OSTE33 1012 0.0218 (65/2988) 0 * * Os_TE_700785 Chr11 24622965 24622964 - TYPEU1 380 0.0007 (2/2981) 0 * * Os_TE_700782 Chr11 24621988 24621989 + TRUNCATOR2_LTR 2904 0.2035 (577/2836) 0 * Os_TE_700781 Os_TE_700781 Chr11 24621984 24621983 - TRUNCATOR2_LTR 2904 0.2008 (580/2888) 0 * Os_TE_700782 Os_TE_700780 Chr11 24621865 24621866 + COPIA2-LTR_OS 6433 0.0003 (1/2899) 0 * Os_TE_700779 Os_TE_700779 Chr11 24621861 24621860 - COPIA2-LTR_OS 6433 0.0003 (1/2961) 0 * Os_TE_700780 Os_TE_700778 Chr11 24621750 24621751 - ORSiTETN00200006 8216 0.0405 (120/2960) 0 * Os_TE_700777 Os_TE_700777 Chr11 24621748 24621747 + ORSiTETN00200006 8216 0.0402 (119/2958) 0 * Os_TE_700778 Os_TE_700774 Chr11 24621644 24621645 + ORSgTETN00100092 209 0.6876 (2049/2980) 0 * * Os_TE_700717 Chr11 24590987 24590986 - OSTE20 496 0.2281 (255/1118) 0 * * Os_TE_700716 Chr11 24590614 24590615 - RETROSAT4_LTR 13504 0.0018 (2/1091) 0 * Os_TE_700715 Os_TE_700715 Chr11 24590610 24590609 + RETROSAT4_LTR 13504 0.0021 (2/966) 0 * Os_TE_700716 Os_TE_700699 Chr11 24586149 24586150 - ORMOSIA 482 0.1931 (570/2952) 0 * * Os_TE_700697 Chr11 24586017 24586018 - ORSgTEMT01601564 233 0.0414 (121/2926) 0 * * Os_TE_700696 Chr11 24585641 24583590 - ORSgTETN00200001 10994 0.4076 (949/2328) 1 Intact * Os_TE_700693 Chr11 24583669 24582761 + CACTA-D 1038 0.6494 (1463/2253) 1 Intact Os_TE_700691 Os_TE_700691 Chr11 24582709 24583666 - CACTA-I 1124 0.6101 (1455/2385) 1 Intact Os_TE_700693 Os_TE_700688 Chr11 24582635 24582397 - ORSgTEMT01601696 238 0.4036 (952/2359) 1 Intact Os_TE_700687 Os_TE_700687 Chr11 24582397 24582635 - ORSgTEMT01601493 303 0.6059 (973/1606) 1 Intact Os_TE_700688 Os_TE_700686 Chr11 24582292 24582293 + SPMLIKE 10989 0.0033 (8/2396) 0 * Os_TE_700685 Os_TE_700685 Chr11 24582290 24582289 - ORSgTETN00200001 10994 0.0040 (9/2277) 0 * Os_TE_700686 Os_TE_700684 Chr11 24582229 24582228 - STOWAWAY43_OS 233 0.0043 (10/2303) 0 * * Os_TE_700683 Chr11 24582188 24582187 + ORSgTEMT01602188 240 0.2371 (463/1953) 0 * * Os_TE_700676 Chr11 24578936 24578937 + ORSiTERTOOT00345 5324 0.0756 (157/2077) 0 * * Os_TE_700674 Chr11 24578800 24578801 - RIREX_LTR 8828 0.0077 (14/1820) 0 * Os_TE_700673 Os_TE_700673 Chr11 24578796 24578795 + RIREX_LTR 8828 0.0086 (13/1506) 0 * Os_TE_700674 Os_TE_700667 Chr11 24574445 24574446 - SZ-67LTR 1540 0.0038 (2/526) 0 * * Os_TE_700664 Chr11 24573946 24573945 + SEVERIN-2 1952 0.0172 (9/522) 0 * * Os_TE_700663 Chr11 24573760 24573759 + SPMLIKE 10989 0.4383 (508/1159) 0 * * Os_TE_700647 Chr11 24569468 24569187 + ORSgTEMT01601143 237 0.8974 (385/429) 1 Intact * Os_TE_700644 Chr11 24568095 24568096 - OSTE20 496 0.0108 (7/648) 0 * * Os_TE_700633 Chr11 24564908 24566299 + OSTE21 1271 0.0876 (120/1370) 1 Intact * Os_TE_700632 Chr11 24564623 24564624 + DS-RICE4N 715 0.0052 (7/1357) 0 * Os_TE_700631 Os_TE_700631 Chr11 24564616 24564615 - DS-RICE2N 613 0.0051 (7/1363) 0 * Os_TE_700632 Os_TE_700630 Chr11 24564120 24564121 - ENSPM4_OS 11610 0.0007 (1/1344) 0 * * Os_TE_700556 Chr11 24532656 24532655 + SZ-50_LTR 11691 0.0374 (25/668) 0 * * Os_TE_700552 Chr11 24531713 24531714 - ORSgTETN00200001 10994 0.1599 (251/1570) 0 * * Os_TE_700497 Chr11 24506586 24506364 + ORSgTEMT01601404 229 0.8054 (629/781) 1 Intact Os_TE_700496 Os_TE_700496 Chr11 24506348 24506583 + ORSgTEMT01602083 237 0.7865 (582/740) 1 Intact Os_TE_700497 Os_TE_700495 Chr11 24506316 24506317 - MIDWAY 985 0.0054 (4/740) 0 * * Os_TE_700491 Chr11 24505096 24505227 - ORSgTEMT00501003 148 0.7666 (555/724) 1 Intact * Os_TE_700480 Chr11 24500223 24500224 - ORSgTETN00200001 10994 0.0241 (19/788) 0 * Os_TE_700479 Os_TE_700479 Chr11 24500221 24500220 + SPMLIKE 10989 0.0326 (22/674) 0 * Os_TE_700480 Os_TE_700478 Chr11 24500168 24491097 + HELITRON8_OS 8831 0.1751 (117/668) 1 Intact * Os_TE_700477 Chr11 24483481 24483243 - ORSgTEMT01601493 303 0.8723 (635/728) 1 Intact * Os_TE_700468 Chr11 24476890 24476891 - COPI2_LTR 4733 0.0004 (1/2315) 0 * * Os_TE_700466 Chr11 24474267 24474268 + AMYLTP 383 0.0020 (4/2047) 0 * * Os_TE_700462 Chr11 24473493 24473256 - ORSgTEMT01602413 239 0.3781 (653/1727) 1 Intact * Os_TE_700442 Chr11 24464570 24464571 - RIRE5-LTR_OS 6427 0.0051 (10/1968) 0 * * Os_TE_700426 Chr11 24457179 24457180 + ENSPM4_OS 11610 0.0024 (5/2053) 0 * * Os_TE_700424 Chr11 24456460 24456461 + CACTA-L 1162 0.0371 (91/2450) 0 * * Os_TE_700422 Chr11 24456020 24456021 - ORSgTETN00200001 10994 0.0030 (7/2363) 0 * Os_TE_700421 Os_TE_700421 Chr11 24456018 24456017 + SPMLIKE 10989 0.0042 (10/2393) 0 * Os_TE_700422 Os_TE_700417 Chr11 24454845 24454846 + Mudr5_OS 5952 0.0333 (94/2824) 0 * * Os_TE_700414 Chr11 24454021 24454020 + RIRE3_LTR 12054 0.3227 (957/2966) 0 * * Os_TE_700413 Chr11 24453268 24453267 - SZ-35LTR 3853 0.0017 (5/2991) 0 * * Os_TE_700409 Chr11 24452436 24452435 + ORSgTEMT01700791 134 0.0317 (95/2994) 0 * * Os_TE_700407 Chr11 24452425 24452424 + RIREX_LTR 8828 0.0186 (54/2900) 0 * * Os_TE_700406 Chr11 24452372 24452373 - RIRE2_LTR 11306 0.0017 (5/2993) 0 * Os_TE_700405 Os_TE_700405 Chr11 24452368 24452367 + RIRE2_LTR 11306 0.0017 (5/2974) 0 * Os_TE_700406 Os_TE_700404 Chr11 24452273 24452274 + RIREX_LTR 8828 0.0583 (166/2846) 0 * Os_TE_700403 Os_TE_700403 Chr11 24452269 24452268 - RIREX_LTR 8828 0.0570 (170/2985) 0 * Os_TE_700404 Os_TE_700395 Chr11 24451639 24451640 + SZ-35LTR 3853 0.0003 (1/2896) 0 * Os_TE_700394 Os_TE_700394 Chr11 24451635 24451634 - SZ-35LTR 3853 0.0003 (1/2901) 0 * Os_TE_700395 Os_TE_700393 Chr11 24451471 24451470 + ENSPM4_OS 11610 0.0661 (192/2904) 0 * * Os_TE_700392 Chr11 24451287 24451288 + COPIA2-LTR_OS 6433 0.0189 (54/2855) 0 * Os_TE_700391 Os_TE_700391 Chr11 24451283 24451282 - COPIA2-LTR_OS 6433 0.0190 (55/2900) 0 * Os_TE_700392 Os_TE_700390 Chr11 24451264 24451265 - ORSgTETN00200001 10994 0.0608 (176/2897) 0 * Os_TE_700389 Os_TE_700389 Chr11 24451262 24451261 + SPMLIKE 10989 0.0629 (182/2893) 0 * Os_TE_700390 Os_TE_700388 Chr11 24451233 24451234 + SPMLIKE 10989 0.0007 (2/2891) 0 * Os_TE_700387 Os_TE_700387 Chr11 24451231 24451230 - SPMLIKE 10989 0.0007 (2/2868) 0 * Os_TE_700388 Os_TE_700386 Chr11 24450759 24450760 + RETRO2_LTR 12874 0.0787 (189/2401) 0 * Os_TE_700385 Os_TE_700385 Chr11 24450755 24450754 - RETRO2_LTR 12874 0.0774 (186/2402) 0 * Os_TE_700386 Os_TE_700379 Chr11 24448310 24448309 - ORSgTEMT01701676 156 0.2330 (653/2803) 0 * * Os_TE_700377 Chr11 24448112 24448111 - ORSgTETN00200001 10994 0.0153 (44/2867) 0 * * Os_TE_700349 Chr11 24440845 24440846 - ORSgTERT00200842 1080 0.0003 (1/2907) 0 * * Os_TE_700346 Chr11 24437030 24424052 - RETRO2_LTR 12874 0.0712 (213/2990) 1 Intact Os_TE_700324 Os_TE_700324 Chr11 24424052 24435674 + ORSgTERTOOT00009 12852 0.0705 (211/2992) 1 Intact Os_TE_700346 Os_TE_700320 Chr11 24420864 24419960 + ORSiTETNOOT00107 906 0.6473 (1879/2903) 1 Intact * Os_TE_700317 Chr11 24418595 24418594 + RETROSAT5_LTR 13878 0.0013 (4/2989) 0 * * Os_TE_700316 Chr11 24418274 24418275 + RETROSAT4_LTR 13504 0.0007 (2/2988) 0 * Os_TE_700315 Os_TE_700315 Chr11 24418270 24418269 - RETROSAT4_LTR 13504 0.0007 (2/2986) 0 * Os_TE_700316 Os_TE_700314 Chr11 24417530 24417531 + RETRO1_LTR 8314 0.0024 (7/2965) 0 * Os_TE_700313 Os_TE_700313 Chr11 24417526 24417525 - RETRO1_LTR 8314 0.0020 (6/2981) 0 * Os_TE_700314 Os_TE_700312 Chr11 24417171 24417170 - ORSgTETN00200001 10994 0.0010 (3/2983) 0 * * Os_TE_700310 Chr11 24416291 24416292 + STOWAWAY1_OS 149 0.2618 (614/2345) 0 * Os_TE_700309 Os_TE_700309 Chr11 24416290 24416289 + STOWAWAY1_OS 149 0.3996 (1132/2833) 0 * Os_TE_700310 Os_TE_700308 Chr11 24416043 24416042 - TRUNCATOR 2918 0.2245 (602/2681) 0 * Os_TE_700307 Os_TE_700307 Chr11 24416042 24416043 + TRUNCATOR 2918 0.2352 (532/2262) 0 * Os_TE_700308 Os_TE_700305 Chr11 24416009 24416008 + ORSgTEMT01602119 229 0.8412 (1086/1291) 0 * * Os_TE_700289 Chr11 24409827 24409826 + SZ-67LTR 1540 0.3790 (1118/2950) 0 * * Os_TE_700285 Chr11 24409317 24409316 + RIREX_LTR 8828 0.0007 (2/2982) 0 * * Os_TE_700270 Chr11 24406680 24406681 - SZ-48LTR 3632 0.1481 (404/2727) 0 * * Os_TE_700256 Chr11 24401476 24401477 + COPIA2-LTR_OS 6433 0.0013 (4/2975) 0 * Os_TE_700255 Os_TE_700255 Chr11 24401472 24401471 - COPIA2-LTR_OS 6433 0.0013 (4/2982) 0 * Os_TE_700256 Os_TE_700253 Chr11 24399040 24399039 - ENSPM4_OS 11610 0.0030 (9/2981) 0 * Os_TE_700252 Os_TE_700252 Chr11 24399034 24399035 + ENSPM4_OS 11610 0.0030 (9/2977) 0 * Os_TE_700253 Os_TE_700249 Chr11 24396053 24396257 - COPIA2-LTR_OS 6433 0.2378 (709/2982) 1 Intact * Os_TE_700238 Chr11 24387132 24387131 - SZ-35LTR 3853 0.1043 (275/2636) 0 * * Os_TE_700237 Chr11 24386999 24387000 - SZ-43LTR 4039 0.2090 (561/2684) 0 * * Os_TE_700223 Chr11 24379932 24379933 - RIREX_LTR 8828 0.0032 (5/1577) 0 * Os_TE_700222 Os_TE_700222 Chr11 24379928 24379927 + RIREX_LTR 8828 0.0029 (5/1713) 0 * Os_TE_700223 Os_TE_700214 Chr11 24373484 24373485 + SZ-48LTR 3632 0.7769 (512/659) 0 * Os_TE_700213 Os_TE_700213 Chr11 24373480 24373479 - SZ-48LTR 3632 0.7870 (521/662) 0 * Os_TE_700214 Os_TE_700202 Chr11 24370694 24370695 - MPING 430 0.0015 (1/664) 0 * Os_TE_700201 Os_TE_700201 Chr11 24370692 24370691 + MPING 430 0.0015 (1/663) 0 * Os_TE_700202 Os_TE_700189 Chr11 24364019 24350194 + RETROSAT4_LTR 13504 0.2102 (628/2987) 1 Intact Os_TE_700178 Os_TE_700178 Chr11 24350194 24364019 - RETROSAT4_LTR 13504 0.2187 (654/2991) 1 Intact Os_TE_700189 Os_TE_700175 Chr11 24348858 24348857 - ENSPM4_OS 11610 0.0021 (6/2888) 0 * * Os_TE_700158 Chr11 24342362 24342363 - SZ-35LTR 3853 0.0003 (1/2982) 0 * * Os_TE_700147 Chr11 24338115 24338114 + SZ-55_LTR 10318 0.0357 (99/2770) 0 * * Os_TE_700146 Chr11 24337762 24337763 + CACTA-H 1152 0.0014 (4/2772) 0 * * Os_TE_700145 Chr11 24337731 24337730 + ORSgTEMT01602181 239 0.0004 (1/2758) 0 * * Os_TE_700144 Chr11 24337472 24337473 - RIRE2_LTR 11306 0.0482 (133/2761) 0 * Os_TE_700143 Os_TE_700143 Chr11 24337468 24337467 + RIRE2_LTR 11306 0.0475 (131/2759) 0 * Os_TE_700144 Os_TE_700142 Chr11 24336641 24336642 - MIDWAY 985 0.0010 (1/974) 0 * * Os_TE_700139 Chr11 24335503 24335504 + ORSgTETN00200005 1121 0.0324 (95/2932) 0 * * Os_TE_700138 Chr11 24334917 24334918 - COPI2_LTR 4733 0.0773 (226/2925) 0 * Os_TE_700137 Os_TE_700137 Chr11 24334913 24334912 + COPI2_LTR 4733 0.0769 (225/2926) 0 * Os_TE_700138 Os_TE_700134 Chr11 24333290 24333291 + SZ-35LTR 3853 0.0014 (4/2932) 0 * Os_TE_700133 Os_TE_700133 Chr11 24333286 24333285 - SZ-35LTR 3853 0.0010 (3/2931) 0 * Os_TE_700134 Os_TE_700127 Chr11 24331731 24331732 - CACTA-M 1129 0.0899 (258/2870) 0 * Os_TE_700126 Os_TE_700126 Chr11 24331729 24331728 + CACTA-M 1129 0.0894 (256/2865) 0 * Os_TE_700127 Os_TE_700123 Chr11 24330868 24330867 + ENSPM4_OS 11610 0.0331 (97/2931) 0 * * Os_TE_700122 Chr11 24330451 24330450 - ENSPM4_OS 11610 0.0663 (194/2928) 0 * Os_TE_700121 Os_TE_700121 Chr11 24330450 24330451 + ENSPM4_OS 11610 0.0662 (194/2929) 0 * Os_TE_700122 Os_TE_700116 Chr11 24327873 24327874 + RETROSAT4_LTR 13504 0.2422 (703/2903) 0 * * Os_TE_700114 Chr11 24326961 24326962 - SZ-35LTR 3853 0.0383 (99/2584) 0 * Os_TE_700113 Os_TE_700113 Chr11 24326957 24326956 + RETROSAT4_LTR 13504 0.0317 (91/2871) 0 * Os_TE_700114 Os_TE_700103 Chr11 24326307 24326308 + RETROSAT4_LTR 13504 0.0010 (3/2883) 0 * Os_TE_700102 Os_TE_700102 Chr11 24326303 24326302 - RETROSAT4_LTR 13504 0.0010 (3/2885) 0 * Os_TE_700103 Os_TE_700100 Chr11 24326011 24323531 + SPMLIKE 10989 0.1345 (392/2914) 1 Intact * Os_TE_700095 Chr11 24323247 24323248 - SZ-48LTR 3632 0.0021 (6/2921) 0 * Os_TE_700094 Os_TE_700094 Chr11 24323243 24323242 + SZ-48LTR 3632 0.0021 (6/2921) 0 * Os_TE_700095 Os_TE_700076 Chr11 24313674 24313675 + SPMLIKE 10989 0.2517 (745/2960) 0 * Os_TE_700075 Os_TE_700075 Chr11 24313672 24313671 - ORSgTETN00200001 10994 0.0083 (19/2280) 0 * Os_TE_700076 Os_TE_700065 Chr11 24307897 24307898 - RIRE2_LTR 11306 0.0324 (92/2837) 0 * Os_TE_700064 Os_TE_700064 Chr11 24307893 24307892 + RIRE2_LTR 11306 0.0349 (98/2810) 0 * Os_TE_700065 Os_TE_700032 Chr11 24303160 24303161 + COPI2_LTR 4733 0.0007 (2/2957) 0 * Os_TE_700031 Os_TE_700031 Chr11 24303156 24303155 - COPI2_LTR 4733 0.0007 (2/2965) 0 * Os_TE_700032 Os_TE_700014 Chr11 24300557 24300558 - ORSgTEMT00500439 153 0.0094 (26/2771) 0 * * Os_TE_699992 Chr11 24293697 24293698 + SPMLIKE 10989 0.0604 (169/2799) 0 * Os_TE_699991 Os_TE_699991 Chr11 24293695 24293694 - ORSgTETN00200001 10994 0.0549 (153/2788) 0 * Os_TE_699992 Os_TE_699989 Chr11 24293213 24293214 + GYPSY-A_LTR 8951 0.0180 (51/2833) 0 * * Os_TE_699979 Chr11 24291319 24291318 + CACTA-I 1124 0.0355 (100/2818) 0 * * Os_TE_699965 Chr11 24290058 24290057 - ORSgTETN00200001 10994 0.0343 (97/2831) 0 * * Os_TE_699961 Chr11 24289096 24289097 + MDR2 6967 0.0139 (39/2807) 0 * Os_TE_699960 Os_TE_699960 Chr11 24289088 24289087 - MDR2 6967 0.0141 (40/2827) 0 * Os_TE_699961 Os_TE_699958 Chr11 24288773 24288772 + NDNA1TNA_OS 334 0.0035 (10/2820) 0 * * Os_TE_699957 Chr11 24288388 24288389 + TRUNCATOR 2918 0.3152 (887/2814) 0 * * Os_TE_699942 Chr11 24282008 24282009 + SPMLIKE 10989 0.0004 (1/2817) 0 * * Os_TE_699928 Chr11 24278284 24278285 + RETROSAT4_LTR 13504 0.0851 (254/2983) 0 * * Os_TE_699925 Chr11 24278147 24278146 - TRUNCATOR 2918 0.0582 (174/2990) 0 * * Os_TE_699920 Chr11 24276697 24276696 - ORSgTERT00201216 11284 0.0004 (1/2522) -1 * * Os_TE_699904 Chr11 24270722 24270723 + RIRE2_LTR 11306 0.0003 (1/2906) 0 * * Os_TE_699878 Chr11 24265016 24265015 + ORSgTEMT01601591 242 0.0010 (3/2938) 0 * * Os_TE_699866 Chr11 24260513 24260514 - CACTA-G1 797 0.0618 (184/2978) 0 * * Os_TE_699859 Chr11 24259033 24259034 - ORSgTETN00200001 10994 0.0091 (26/2851) 0 * * Os_TE_699857 Chr11 24258896 24258897 - ENSPM4_OS 11610 0.0150 (43/2876) 0 * * Os_TE_699856 Chr11 24258767 24258768 + OSTE33 1012 0.0123 (36/2919) 0 * Os_TE_699855 Os_TE_699855 Chr11 24258758 24258757 + OSTE33 1012 0.0116 (34/2928) 0 * Os_TE_699856 Os_TE_699852 Chr11 24257217 24257216 - ENSPM6_OS 9815 0.0849 (253/2980) 0 * * Os_TE_699850 Chr11 24256551 24256552 + ORSgTERT00100155 267 0.0013 (4/2975) 0 * * Os_TE_699839 Chr11 24245336 24245337 + RIREX_LTR 8828 0.0043 (13/2997) 0 * Os_TE_699838 Os_TE_699838 Chr11 24245332 24245331 - RIREX_LTR 8828 0.0043 (13/2997) 0 * Os_TE_699839 Os_TE_699830 Chr11 24243108 24243109 - SNAP-OL3 189 0.0003 (1/2942) 0 * * Os_TE_699828 Chr11 24242821 24242822 - COPIA2-LTR_OS 6433 0.0590 (174/2951) 0 * * Os_TE_699820 Chr11 24241633 24241634 - TRUNCATOR2_LTR 2904 0.0151 (43/2849) 0 * Os_TE_699819 Os_TE_699819 Chr11 24241629 24241628 + ORSiCMCM00100019 2717 0.0074 (21/2836) 0 * Os_TE_699820 Os_TE_699806 Chr11 24240316 24240317 + F1275 157 0.0003 (1/2988) 0 * Os_TE_699805 Os_TE_699805 Chr11 24240314 24240313 - F1275 157 0.0003 (1/2986) 0 * Os_TE_699806 Os_TE_699802 Chr11 24239055 24239056 + TOS17LTR 138 0.0050 (15/2990) 0 * Os_TE_699801 Os_TE_699801 Chr11 24239051 24239050 - TOS17LTR 138 0.0050 (15/2994) 0 * Os_TE_699802 Os_TE_699800 Chr11 24238994 24238995 + COPI2_LTR 4733 0.0003 (1/2991) 0 * Os_TE_699799 Os_TE_699799 Chr11 24238990 24238989 - COPI2_LTR 4733 0.0003 (1/2991) 0 * Os_TE_699800 Os_TE_699793 Chr11 24234815 24234816 + COPIA3-LTR_OS 5061 0.0003 (1/2889) 0 * * Os_TE_699791 Chr11 24230363 24230140 - ORSgTEMT02400248 224 0.0712 (209/2935) 1 Intact Os_TE_699790 Os_TE_699790 Chr11 24230139 24230362 - ORSgTEMT02400246 177 0.0697 (207/2969) 1 Intact Os_TE_699791 Os_TE_699783 Chr11 24229221 24229222 + COPI2_LTR 4733 0.0004 (1/2724) 0 * * Os_TE_699781 Chr11 24229178 24229179 + OsSN3 183 0.0871 (258/2961) 0 * * Os_TE_699772 Chr11 24224557 24224556 + STOWAWAY51_OS 246 0.0003 (1/2966) 0 * Os_TE_699771 Os_TE_699771 Chr11 24224551 24224552 - STOWAWAY51_OS 246 0.0003 (1/2983) 0 * Os_TE_699772 Os_TE_699767 Chr11 24218874 24218875 + TELIA 141 0.6004 (1668/2778) 0 * Os_TE_699766 Os_TE_699766 Chr11 24218866 24218865 - TELIA 141 0.5988 (1667/2784) 0 * Os_TE_699767 Os_TE_699765 Chr11 24218803 24218802 - DITTO 244 0.5373 (1462/2721) 0 * * Os_TE_699763 Chr11 24217390 24217391 - NDNA1TNA_OS 334 0.0020 (6/2953) 0 * Os_TE_699762 Os_TE_699762 Chr11 24217388 24217387 + NDNA1TNA_OS 334 0.0018 (5/2837) 0 * Os_TE_699763 Os_TE_699760 Chr11 24217289 24216897 + TYPEU2 382 0.3875 (1157/2986) 1 Intact * Os_TE_699722 Chr11 24206308 24206309 + RETRO1_LTR 8314 0.0003 (1/2996) 0 * Os_TE_699721 Os_TE_699721 Chr11 24206304 24206303 - RETRO1_LTR 8314 0.0010 (3/2993) 0 * Os_TE_699722 Os_TE_699709 Chr11 24201483 24201482 - ORSgTETN00200001 10994 0.1874 (261/1393) 0 * * Os_TE_699708 Chr11 24201456 24201457 - RIRE2_LTR 11306 0.1441 (163/1131) 0 * Os_TE_699707 Os_TE_699707 Chr11 24201452 24201451 - ORSgTERT00201216 11284 0.1495 (170/1137) 0 * Os_TE_699708 Os_TE_699705 Chr11 24201437 24201436 - RIREX_LTR 8828 0.0040 (4/1012) 0 * * Os_TE_699701 Chr11 24200587 24200588 + OSMU5 4881 0.0009 (1/1061) 0 * Os_TE_699700 Os_TE_699700 Chr11 24200579 24200578 + OSMU5 4881 0.0009 (1/1061) 0 * Os_TE_699701 Os_TE_699699 Chr11 24200364 24200365 - MuDR4_OS 7610 0.2562 (239/933) 0 * Os_TE_699698 Os_TE_699698 Chr11 24200356 24200355 - MuDR4_OS 7610 0.3763 (412/1095) 0 * Os_TE_699699 Os_TE_699697 Chr11 24200302 24200303 - ORSgTETN00200001 10994 0.0467 (46/985) 0 * Os_TE_699696 Os_TE_699696 Chr11 24200300 24200299 + SPMLIKE 10989 0.0024 (4/1668) 0 * Os_TE_699697 Os_TE_699693 Chr11 24199148 24199149 + Cassandra_OS-LTR 764 0.0348 (51/1464) 0 * Os_TE_699692 Os_TE_699692 Chr11 24199144 24199143 - Cassandra_OS-LTR 764 0.0351 (51/1452) 0 * Os_TE_699693 Os_TE_699658 Chr11 24185427 24185426 - RIRE2_LTR 11306 0.0010 (3/2987) 0 * * Os_TE_699643 Chr11 24183102 24183103 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_699642 Os_TE_699642 Chr11 24183098 24183097 - COPIA2-LTR_OS 6433 0.0003 (1/2945) 0 * Os_TE_699643 Os_TE_699640 Chr11 24182615 24182616 - ORSgTEMT00500026 147 0.5757 (1655/2875) 0 * * Os_TE_699639 Chr11 24181598 24181599 + YOUREN 286 0.0679 (187/2753) 0 * * Os_TE_699637 Chr11 24181573 24181574 + SZ-67LTR 1540 0.0783 (224/2859) 0 * * Os_TE_699635 Chr11 24179604 24179603 - ORSgTEMT01600201 236 0.0010 (3/2950) 0 * Os_TE_699634 Os_TE_699634 Chr11 24179601 24179602 - ORSgTEMT01601432 239 0.0010 (3/2979) 0 * Os_TE_699635 Os_TE_699633 Chr11 24178647 24178648 + RIRE3A_LTR 10580 0.0154 (46/2990) 0 * Os_TE_699632 Os_TE_699632 Chr11 24178643 24178642 - RIRE3A_LTR 10580 0.0154 (46/2991) 0 * Os_TE_699633 Os_TE_699628 Chr11 24177816 24177817 + RIREX_LTR 8828 0.0182 (54/2974) 0 * Os_TE_699627 Os_TE_699627 Chr11 24177812 24177811 - RIREX_LTR 8828 0.0188 (56/2979) 0 * Os_TE_699628 Os_TE_699613 Chr11 24171565 24171564 + ORSgTETNOOT01668 244 0.0187 (56/2994) 0 * * Os_TE_699605 Chr11 24166032 24166031 + SPMLIKE 10989 0.0988 (293/2967) 0 * * Os_TE_699592 Chr11 24160222 24160223 - CLOUD 734 0.0050 (15/2973) 0 * * Os_TE_699580 Chr11 24159486 24159485 + MPING 430 0.0003 (1/2983) 0 * * Os_TE_699567 Chr11 24155211 24155212 + SPMLIKE 10989 0.0008 (1/1312) 0 * * Os_TE_699566 Chr11 24155187 24155186 - SEVERIN-2 1952 0.0708 (97/1371) 0 * * Os_TE_699534 Chr11 24123952 24123953 - F569 228 0.0003 (1/2952) 0 * * Os_TE_699531 Chr11 24122710 24122711 - SZ-9LTR 965 0.0394 (118/2996) 0 * * Os_TE_699528 Chr11 24121453 24121454 - ORSgTERT00201216 11284 0.0053 (16/2995) 0 * Os_TE_699527 Os_TE_699527 Chr11 24121449 24121448 - RIRE2_LTR 11306 0.0057 (17/2995) 0 * Os_TE_699528 Os_TE_699511 Chr11 24115176 24115177 + ORSiTERTOOT00296 5553 0.0003 (1/2967) 0 * Os_TE_699510 Os_TE_699510 Chr11 24115172 24115171 - SC-3_LTR 5748 0.0003 (1/2973) 0 * Os_TE_699511 Os_TE_699509 Chr11 24114603 24114604 - SC-3_LTR 5748 0.0003 (1/2990) 0 * Os_TE_699508 Os_TE_699508 Chr11 24114599 24114598 + SC-3_LTR 5748 0.0003 (1/2985) 0 * Os_TE_699509 Os_TE_699491 Chr11 24109795 24109794 - ENSPM_OS 9843 0.2002 (518/2588) 0 * * Os_TE_699484 Chr11 24106687 24107034 + ORSgTEMT00800035 370 0.7398 (2112/2855) 1 Intact * Os_TE_699483 Chr11 24106478 24106477 - RIRE2_LTR 11306 0.0003 (1/2891) 0 * * Os_TE_699479 Chr11 24104996 24104997 - ORSgTETN00200001 10994 0.1002 (214/2136) 0 * * Os_TE_699464 Chr11 24103024 24103025 - ORSiTERT00200154 9386 0.1025 (304/2966) 0 * Os_TE_699463 Os_TE_699463 Chr11 24103018 24103017 + TRUNCATOR 2918 0.1069 (313/2928) 0 * Os_TE_699464 Os_TE_699458 Chr11 24098755 24098754 - SC-8_LTR 4951 0.0007 (2/2964) 0 * * Os_TE_699451 Chr11 24095938 24095939 + AMYLTP 383 0.0003 (1/2990) 0 * * Os_TE_699417 Chr11 24087659 24087658 + ORSgTEMT01601122 212 0.6288 (1418/2255) 0 * Os_TE_699416 Os_TE_699416 Chr11 24087658 24087659 + STOWAWAY21_OS 243 0.5021 (1441/2870) 0 * Os_TE_699417 Os_TE_699413 Chr11 24085765 24085764 - LINE-6_OS 4886 0.0010 (3/2986) 0 * * Os_TE_699412 Chr11 24085306 24085305 - CLOUD-4 520 0.4843 (1436/2965) 0 * * Os_TE_699409 Chr11 24085091 24085092 + SINE1OS 127 0.0619 (184/2973) 0 * * Os_TE_699408 Chr11 24084055 24084054 + ORSgTEMT01400018 210 0.0006 (1/1575) 0 * Os_TE_699407 Os_TE_699407 Chr11 24084052 24084053 + ORSgTEMT01400040 213 0.0025 (4/1614) 0 * Os_TE_699408 Os_TE_699405 Chr11 24083581 24083580 - ORSgTEMT01400022 212 0.3123 (501/1604) 0 * Os_TE_699404 Os_TE_699404 Chr11 24083572 24083573 - ORSgTEMT01400015 213 0.3151 (507/1609) 0 * Os_TE_699405 Os_TE_699403 Chr11 24082813 24083473 + BAJIELTR 4500 0.2963 (470/1586) 1 Solo_LTR * Os_TE_699392 Chr11 24076804 24076805 - ORSiTERTOOT00402 2660 0.0039 (7/1780) 0 * * Os_TE_699389 Chr11 24075117 24075116 + OsSN3 183 0.0853 (186/2181) 0 * * Os_TE_699388 Chr11 24074958 24074959 - SC-8_LTR 4951 0.0037 (8/2175) 0 * Os_TE_699387 Os_TE_699387 Chr11 24074954 24074953 + SC-8_LTR 4951 0.0037 (8/2167) 0 * Os_TE_699388 Os_TE_699386 Chr11 24074189 24074188 - ORSgTEMT01600639 228 0.0089 (19/2132) 0 * * Os_TE_699385 Chr11 24072699 24072700 - ORSgTEMT01601208 238 0.0078 (17/2172) 0 * * Os_TE_699383 Chr11 24072012 24072013 + RIRE2_LTR 11306 0.0032 (7/2185) 0 * Os_TE_699382 Os_TE_699382 Chr11 24072008 24072007 - RIRE2_LTR 11306 0.0032 (7/2169) 0 * Os_TE_699383 Os_TE_699374 Chr11 24070308 24070307 + RPO_OS 1983 0.0022 (4/1821) 0 * * Os_TE_699373 Chr11 24069773 24069774 - INDITTO 263 0.0005 (1/1861) 0 * * Os_TE_699372 Chr11 24069743 24069744 + INDITTO 263 0.0187 (27/1440) 0 * * Os_TE_699371 Chr11 24069172 24069173 - RIREX_LTR 8828 0.0011 (2/1816) 0 * Os_TE_699370 Os_TE_699370 Chr11 24069168 24069167 + RIREX_LTR 8828 0.0011 (2/1821) 0 * Os_TE_699371 Os_TE_699369 Chr11 24069017 24069016 + COPIA1-LTR_OS 9292 0.0005 (1/1827) 0 * * Os_TE_699365 Chr11 24066975 24066976 + TYPEU4 402 0.0018 (3/1704) 0 * * Os_TE_699364 Chr11 24066253 24062687 - HATORY 3570 0.5268 (471/894) 1 Intact * Os_TE_699355 Chr11 24056770 24056771 - MERMITED 1572 0.0059 (3/508) 0 * * Os_TE_699336 Chr11 24046480 24046481 + EnSpm-13_OS 11171 0.0011 (1/933) 0 * Os_TE_699335 Os_TE_699335 Chr11 24046478 24046477 - EnSpm-13_OS 11171 0.0011 (1/890) 0 * Os_TE_699336 Os_TE_699333 Chr11 24045470 24041706 - SZ-67LTR 1540 0.7626 (668/876) 1 Intact Os_TE_699327 Os_TE_699327 Chr11 24041706 24045470 + SZ-67LTR 1540 0.7526 (642/853) 1 Intact Os_TE_699333 Os_TE_699324 Chr11 24038705 24038706 - ORSgTETN00200001 10994 0.0011 (1/888) 0 * Os_TE_699323 Os_TE_699323 Chr11 24038703 24038702 + SPMLIKE 10989 0.0022 (2/890) 0 * Os_TE_699324 Os_TE_699322 Chr11 24038505 24038506 + COPIA2-LTR_OS 6433 0.0068 (6/883) 0 * Os_TE_699321 Os_TE_699321 Chr11 24038501 24038500 - COPIA2-LTR_OS 6433 0.0068 (6/887) 0 * Os_TE_699322 Os_TE_699273 Chr11 24015744 24015743 + TREP220 109 0.0012 (1/837) 0 * * Os_TE_699262 Chr11 24005509 24005508 + SZ-52_LTR 13107 0.0073 (14/1905) 0 * * Os_TE_699249 Chr11 24001990 24001989 + RIREX_LTR 8828 0.0010 (2/2104) 0 * * Os_TE_699241 Chr11 23997483 23997714 + ORSgTEMT01602511 237 0.3457 (644/1863) 1 Intact * Os_TE_699237 Chr11 23995891 23995890 + ORSgTEMT01400031 216 0.4207 (613/1457) 0 * * Os_TE_699236 Chr11 23995871 23995077 - Cassandra_OS-LTR 764 0.5272 (446/846) 1 Intact * Os_TE_699233 Chr11 23994727 23999677 + MERMITEA 1710 0.6966 (1995/2864) 1 Intact * Os_TE_699231 Chr11 23994650 23994649 + SZ-9LTR 965 0.0112 (33/2948) 0 * * Os_TE_699229 Chr11 23994303 23994302 + ORSiTERTOOT00404 4839 0.0101 (30/2979) 0 * * Os_TE_699224 Chr11 23992041 23992042 + RETRO2A_LTR 12895 0.0004 (1/2598) 0 * * Os_TE_699223 Chr11 23991443 23991444 - ENSPM4_OS 11610 0.0011 (3/2671) 0 * * Os_TE_699221 Chr11 23991042 23991043 + COPIA2-LTR_OS 6433 0.0021 (4/1900) 0 * * Os_TE_699212 Chr11 23990215 23990216 - ORSgTETNOOT01930 140 0.4168 (1235/2963) 0 * * Os_TE_699211 Chr11 23989822 23989823 - STOWAWAY1_OS 149 0.6539 (1179/1803) 0 * * Os_TE_699210 Chr11 23989592 23989353 - COPI1_LTR 4721 0.2111 (622/2947) 1 Intact Os_TE_699208 Os_TE_699208 Chr11 23989353 23989590 + COPI1_LTR 4721 0.2114 (629/2975) 1 Intact Os_TE_699210 Os_TE_699207 Chr11 23989270 23989269 + ORSgTEMT00500385 153 0.3893 (1161/2982) 0 * Os_TE_699206 Os_TE_699206 Chr11 23989265 23989266 - GAIJIN 147 0.4250 (1195/2812) 0 * Os_TE_699207 Os_TE_699205 Chr11 23989238 23989237 - ORSgTEMT00501356 145 0.4435 (1259/2839) 0 * Os_TE_699204 Os_TE_699204 Chr11 23989223 23989224 + ORSgTEMT00500201 140 0.4172 (1250/2996) 0 * Os_TE_699205 Os_TE_699203 Chr11 23988242 23988243 + ORSgTEMT00101674 340 0.0013 (4/2995) 0 * * Os_TE_699195 Chr11 23987875 23987876 + RETROSAT4_LTR 13504 0.0430 (128/2979) 0 * Os_TE_699194 Os_TE_699194 Chr11 23987871 23987870 - SZ-35LTR 3853 0.0464 (138/2973) 0 * Os_TE_699195 Os_TE_699190 Chr11 23987521 23987520 + STOWAWAY51_OS 246 0.0024 (7/2961) 0 * Os_TE_699189 Os_TE_699189 Chr11 23987515 23987516 - STOWAWAY51_OS 246 0.0017 (5/2984) 0 * Os_TE_699190 Os_TE_699188 Chr11 23987437 23987438 - NDNA1TNA_OS 334 0.0017 (5/2983) 0 * Os_TE_699187 Os_TE_699187 Chr11 23987435 23987434 + NDNA1TNA_OS 334 0.0017 (5/2987) 0 * Os_TE_699188 Os_TE_699186 Chr11 23987316 23987317 + ORSgTETNOOT01930 140 0.0033 (10/2991) 0 * * Os_TE_699185 Chr11 23987246 23987245 + RIREX_LTR 8828 0.0003 (1/2998) 0 * * Os_TE_699182 Chr11 23987158 23987159 + ORSgTETNOOT00908 242 0.0007 (2/2995) 0 * * Os_TE_699178 Chr11 23983266 23983267 + ORSgTEMT00502327 143 0.4028 (1198/2974) 0 * Os_TE_699177 Os_TE_699177 Chr11 23983262 23983261 + ORSgTETNOOT00323 125 0.3926 (1122/2858) 0 * Os_TE_699178 Os_TE_699173 Chr11 23982132 23982131 + RIRE2_LTR 11306 0.0060 (18/2988) 0 * * Os_TE_699170 Chr11 23980930 23980716 - STOWAWAY50_OS 174 0.4656 (1382/2968) 1 Intact * Os_TE_699166 Chr11 23980126 23980125 + STOWAWAY20_OS 278 0.0003 (1/2996) 0 * * Os_TE_699165 Chr11 23979587 23979586 + SZ-54_LTR 5203 0.0007 (2/2995) 0 * * Os_TE_699160 Chr11 23976762 23976761 + AMYLTP 383 0.0003 (1/2942) 0 * * Os_TE_699135 Chr11 23971706 23971707 + HELITRON8_OS 8831 0.0010 (2/2043) 0 * * Os_TE_699123 Chr11 23968477 23968478 - ORSgTEMT04800063 360 0.0425 (88/2070) 0 * Os_TE_699122 Os_TE_699122 Chr11 23968476 23968475 + ORSgTEMT04800085 366 0.0436 (90/2062) 0 * Os_TE_699123 Os_TE_699116 Chr11 23966684 23967366 - CLOUD-2 711 0.7390 (2010/2720) 1 Intact * Os_TE_699113 Chr11 23965994 23966372 - TYPEU3 380 0.7527 (2076/2758) 1 Intact * Os_TE_699103 Chr11 23964021 23964743 - OSTE17 734 0.7831 (1939/2476) 1 Intact Os_TE_699102 Os_TE_699102 Chr11 23963976 23963738 - ORSgTEMT01602413 239 0.8319 (2148/2582) 1 Intact Os_TE_699103 Os_TE_699089 Chr11 23958000 23957260 - CLOUD 734 0.6720 (1438/2140) 1 Intact * Os_TE_699081 Chr11 23953519 23953518 + CACTA-N 987 0.2114 (527/2493) 0 * * Os_TE_699079 Chr11 23952973 23952972 - COPIA2-LTR_OS 6433 0.1208 (280/2317) 0 * * Os_TE_699076 Chr11 23950880 23950879 - SC-3_LTR 5748 0.0005 (1/2169) 0 * * Os_TE_699070 Chr11 23947366 23947365 - INDITTO 263 0.0660 (151/2288) 0 * * Os_TE_699069 Chr11 23947316 23947317 - ORSgTEMT00901288 246 0.1225 (273/2229) 0 * Os_TE_699068 Os_TE_699068 Chr11 23947315 23947314 + ORSgTEMT00900649 253 0.1273 (285/2239) 0 * Os_TE_699069 Os_TE_699067 Chr11 23947174 23947173 + QINNIU 528 0.0940 (186/1978) 0 * Os_TE_699066 Os_TE_699066 Chr11 23947165 23947166 - HATOS1 3488 0.0949 (196/2066) 0 * Os_TE_699067 Os_TE_699060 Chr11 23939698 23939699 + ORSiTERTOOT00296 5553 0.0582 (85/1460) 0 * Os_TE_699059 Os_TE_699059 Chr11 23939694 23939693 - SC-3_LTR 5748 0.0581 (85/1462) 0 * Os_TE_699060 Os_TE_699052 Chr11 23937261 23937260 + ORSgTETNOOT00908 242 0.0007 (1/1434) 0 * * Os_TE_699035 Chr11 23931001 23931002 + ORSgTETNOOT02577 232 0.0389 (78/2006) 0 * * Os_TE_699032 Chr11 23930877 23930878 + AMYLTP 383 0.1833 (292/1593) 0 * * Os_TE_699031 Chr11 23930874 23930873 + TYPEU4 402 0.2633 (703/2670) 0 * * Os_TE_699030 Chr11 23930867 23930866 - AMYLTP 383 0.1746 (349/1999) 0 * * Os_TE_699024 Chr11 23927839 23927840 - SZ-67LTR 1540 0.0024 (5/2050) 0 * * Os_TE_699018 Chr11 23923857 23923856 + ORSgTEMT01601122 212 0.0031 (8/2617) 0 * Os_TE_699017 Os_TE_699017 Chr11 23923854 23923855 + ORSgTEMT01601122 212 0.0027 (8/2994) 0 * Os_TE_699018 Os_TE_699008 Chr11 23921715 23921716 + ORSgTETNOOT00908 242 0.0013 (4/2964) 0 * Os_TE_699007 Os_TE_699007 Chr11 23921713 23921712 - INDITTO 263 0.0013 (4/2969) 0 * Os_TE_699008 Os_TE_699006 Chr11 23921610 23921611 - STOWAWAY51_OS 246 0.0500 (147/2941) 0 * * Os_TE_699005 Chr11 23921609 23921608 - ORSgTEMT01601432 239 0.0030 (9/2951) 0 * * Os_TE_699004 Chr11 23921354 23921355 - ORSgTEMT01601955 198 0.0527 (155/2942) 0 * * Os_TE_698994 Chr11 23919862 23919863 + F569 228 0.2139 (632/2955) 0 * Os_TE_698993 Os_TE_698993 Chr11 23919860 23919859 - F569 228 0.2121 (622/2932) 0 * Os_TE_698994 Os_TE_698990 Chr11 23918705 23918706 + OSTE33 1012 0.0020 (6/2935) 0 * Os_TE_698989 Os_TE_698989 Chr11 23918696 23918695 + OSTE33 1012 0.0010 (3/2934) 0 * Os_TE_698990 Os_TE_698987 Chr11 23918113 23918114 - RETRO1_LTR 8314 0.0014 (4/2861) 0 * Os_TE_698986 Os_TE_698986 Chr11 23918109 23918108 + RETRO1_LTR 8314 0.0014 (4/2860) 0 * Os_TE_698987 Os_TE_698976 Chr11 23907733 23907734 - SC-3_LTR 5748 0.0003 (1/2993) 0 * * Os_TE_698963 Chr11 23901820 23901821 + ORSgTETNOOT00908 242 0.0011 (3/2667) 0 * * Os_TE_698951 Chr11 23900125 23900126 - RETROSAT2LTR 12796 0.0003 (1/2977) 0 * Os_TE_698950 Os_TE_698950 Chr11 23900123 23900122 + RETROSAT2LTR 12796 0.0003 (1/2982) 0 * Os_TE_698951 Os_TE_698949 Chr11 23899914 23899913 - NDNA1TNA_OS 334 0.0013 (4/2993) 0 * Os_TE_698948 Os_TE_698948 Chr11 23899895 23899896 + NDNA1TNA_OS 334 0.0013 (4/2995) 0 * Os_TE_698949 Os_TE_698942 Chr11 23899431 23899432 + RIREX_LTR 8828 0.0010 (3/2996) 0 * Os_TE_698941 Os_TE_698941 Chr11 23899427 23899426 - RIREX_LTR 8828 0.0007 (2/2991) 0 * Os_TE_698942 Os_TE_698939 Chr11 23897819 23897820 - ORSgTETN00200001 10994 0.0010 (3/2893) 0 * Os_TE_698938 Os_TE_698938 Chr11 23897817 23897816 + SPMLIKE 10989 0.0010 (3/2897) 0 * Os_TE_698939 Os_TE_698927 Chr11 23895928 23895929 - TELIA 141 0.0003 (1/2993) 0 * Os_TE_698926 Os_TE_698926 Chr11 23895920 23895919 + TELIA 141 0.0003 (1/2993) 0 * Os_TE_698927 Os_TE_698924 Chr11 23894941 23894940 + TWIFBIG 3567 0.0023 (7/2986) 0 * * Os_TE_698922 Chr11 23892472 23892473 + ORSiTERTOOT00074 4935 0.0003 (1/2976) 0 * * Os_TE_698921 Chr11 23892276 23892277 - INDITTO 263 0.0014 (4/2962) 0 * * Os_TE_698918 Chr11 23891848 23891849 - RETRO1_LTR 8314 0.0215 (64/2982) 0 * * Os_TE_698914 Chr11 23891510 23891511 - INDITTO 263 0.0003 (1/2975) 0 * Os_TE_698913 Os_TE_698913 Chr11 23891508 23891507 + INDITTO 263 0.0003 (1/2991) 0 * Os_TE_698914 Os_TE_698912 Chr11 23891341 23891342 - NDNA1TNA_OS 334 0.0017 (5/2970) 0 * Os_TE_698911 Os_TE_698911 Chr11 23891339 23891338 + NDNA1TNA_OS 334 0.0020 (6/2961) 0 * Os_TE_698912 Os_TE_698910 Chr11 23891238 23891239 + ORSgTEMT00500209 122 0.0003 (1/2914) 0 * * Os_TE_698877 Chr11 23871837 23871836 - RETRO2_LTR 12874 0.0511 (72/1408) 0 * * Os_TE_698864 Chr11 23869047 23869046 + ORSiTERT00400066 124 0.0013 (4/2987) 0 * * Os_TE_698843 Chr11 23858639 23858640 - TESS 244 0.0015 (2/1342) -1 * * Os_TE_698835 Chr11 23855024 23855023 - SEVERIN-2 1952 0.0086 (24/2797) 0 * * Os_TE_698834 Chr11 23854105 23854106 - MuDR4_OS 7610 0.1068 (292/2734) 0 * * Os_TE_698831 Chr11 23852683 23852684 + SEVERIN-2 1952 0.0014 (3/2069) 0 * * Os_TE_698810 Chr11 23848683 23848682 - NDNA1TNA_OS 334 0.1053 (297/2821) 0 * * Os_TE_698802 Chr11 23846361 23846362 + F770 284 0.0010 (2/2050) 0 * Os_TE_698801 Os_TE_698801 Chr11 23846359 23846358 - F770 284 0.0007 (2/2931) 0 * Os_TE_698802 Os_TE_698792 Chr11 23841510 23841509 + WUWU 113 0.3227 (955/2959) 0 * * Os_TE_698791 Chr11 23841403 23841402 - STOWAWAY51_OS 246 0.0456 (134/2939) 0 * * Os_TE_698790 Chr11 23841207 23841208 - TRUNCATOR 2918 0.2836 (811/2860) 0 * * Os_TE_698786 Chr11 23840486 23840487 - SNAP-OL3 189 0.0065 (13/1995) 0 * * Os_TE_698785 Chr11 23839938 23839937 - RIRE2_LTR 11306 0.3457 (1013/2930) 0 * * Os_TE_698764 Chr11 23829637 23839508 - COPIA1-LTR_OS 9292 0.5501 (1092/1985) 1 Intact * Os_TE_698755 Chr11 23825564 23825565 + SPMLIKE 10989 0.0338 (39/1154) 0 * * Os_TE_698734 Chr11 23821297 23821296 + RIREX_LTR 8828 0.0866 (141/1628) 0 * * Os_TE_698725 Chr11 23817447 23828718 + SZ-43LTR 4039 0.5733 (1122/1957) 1 Intact * Os_TE_698721 Chr11 23816623 23795537 + ENSPM_OS 9843 0.4175 (1172/2807) 1 Intact * Os_TE_698689 Chr11 23790741 23790740 - RIREX_LTR 8828 0.0013 (4/2974) 0 * * Os_TE_698688 Chr11 23790664 23790541 + ORSgTETNOOT01227 140 0.7535 (2201/2921) 1 Intact Os_TE_698687 Os_TE_698687 Chr11 23790530 23790659 - ORSgTEMT00501356 145 0.7442 (2115/2842) 1 Intact Os_TE_698688 Os_TE_698683 Chr11 23790202 23790201 - RETRO1_LTR 8314 0.0089 (26/2932) 0 * * Os_TE_698675 Chr11 23788216 23788215 + ORSiTETNOOT00107 906 0.0057 (17/2973) 0 * * Os_TE_698670 Chr11 23787729 23787730 + ORSgTEMT00901405 217 0.3272 (961/2937) 0 * * Os_TE_698652 Chr11 23785386 23785387 + SZ-62LTR 3649 0.0041 (6/1479) 0 * * Os_TE_698644 Chr11 23783791 23783557 + ORSgTEMT01600527 241 0.7466 (2045/2739) 1 Intact * Os_TE_698640 Chr11 23783454 23783453 + TEOS1 476 0.1369 (247/1804) 0 * * Os_TE_698611 Chr11 23758758 23758759 + ORSgTEMT00700017 386 0.0004 (1/2327) 0 * * Os_TE_698597 Chr11 23757951 23757952 + Cassandra_OS-LTR 764 0.0015 (4/2740) 0 * Os_TE_698596 Os_TE_698596 Chr11 23757947 23757946 - Cassandra_OS-LTR 764 0.0015 (4/2706) 0 * Os_TE_698597 Os_TE_698585 Chr11 23756968 23756305 + TWIFB1 3737 0.2198 (597/2716) 1 Intact * Os_TE_698583 Chr11 23754559 23754558 + F1275 157 0.0019 (4/2114) 0 * * Os_TE_698582 Chr11 23754447 23754448 + MuDR4_OS 7610 0.0200 (57/2848) 0 * * Os_TE_698580 Chr11 23754276 23754277 + NDNA1TNA_OS 334 0.0011 (3/2857) 0 * Os_TE_698579 Os_TE_698579 Chr11 23754274 23754273 - NDNA1TNA_OS 334 0.0011 (3/2852) 0 * Os_TE_698580 Os_TE_698578 Chr11 23754082 23754081 - DITAILA 257 0.2710 (776/2863) 0 * Os_TE_698577 Os_TE_698577 Chr11 23754078 23754079 - ORSgTEMT00901138 254 0.2697 (773/2866) 0 * Os_TE_698578 Os_TE_698570 Chr11 23753324 23753092 + ORSgTEMT01601934 207 0.7420 (2111/2845) 1 Intact Os_TE_698569 Os_TE_698569 Chr11 23753091 23753324 - ORSgTEMT01600675 238 0.7402 (2108/2848) 1 Intact Os_TE_698570 Os_TE_698567 Chr11 23752902 23752901 + ORSgTEMT00500201 140 0.2721 (775/2848) 0 * Os_TE_698566 Os_TE_698566 Chr11 23752901 23752902 + ORSgTETNOOT00317 139 0.2723 (773/2839) 0 * Os_TE_698567 Os_TE_698556 Chr11 23751129 23751128 + ORSgTEMT01601591 242 0.0003 (1/2860) 0 * * Os_TE_698551 Chr11 23747737 23747736 + ORSiTERTOOT00074 4935 0.0011 (3/2806) 0 * * Os_TE_698540 Chr11 23743499 23743500 - CACTA-Q 2268 0.0241 (49/2034) 0 * * Os_TE_698533 Chr11 23741926 23741925 - RETROSAT5_LTR 13878 0.2637 (549/2082) 0 * * Os_TE_698524 Chr11 23739992 23740956 + SZ-9LTR 965 0.3816 (582/1525) 1 Intact * Os_TE_698523 Chr11 23739964 23739965 + ORSiTERTOOT00034 791 0.3709 (789/2127) 0 * Os_TE_698522 Os_TE_698522 Chr11 23739960 23739959 - SZ-22_LTR 4403 0.1308 (195/1491) 0 * Os_TE_698523 Os_TE_698521 Chr11 23739276 23739277 - CACTA-H 1152 0.0057 (12/2094) 0 * Os_TE_698520 Os_TE_698520 Chr11 23739274 23739273 + CACTA-H 1152 0.0067 (14/2094) 0 * Os_TE_698521 Os_TE_698519 Chr11 23738842 23738843 - RIREX_LTR 8828 0.0004 (1/2596) 0 * Os_TE_698518 Os_TE_698518 Chr11 23738838 23738837 + RIREX_LTR 8828 0.0007 (1/1465) 0 * Os_TE_698519 Os_TE_698514 Chr11 23737142 23737143 - ORSgTETN00200001 10994 0.0011 (3/2691) 0 * * Os_TE_698508 Chr11 23735952 23735953 + STOWAWAY51_OS 246 0.0919 (137/1491) 0 * * Os_TE_698506 Chr11 23735575 23735576 - INDITTO 263 0.0027 (4/1476) 0 * * Os_TE_698504 Chr11 23735519 23735520 + RIRE3A_LTR 10580 0.0020 (3/1489) 0 * * Os_TE_698500 Chr11 23732563 23732562 - ORSgTERT00201216 11284 0.0003 (1/2989) 0 * * Os_TE_698493 Chr11 23729431 23729430 + ORSgTEMT00500560 148 0.0014 (4/2821) 0 * Os_TE_698492 Os_TE_698492 Chr11 23729425 23729426 - ORSgTEMT00501639 147 0.0017 (5/2983) 0 * Os_TE_698493 Os_TE_698491 Chr11 23729320 23729321 + ORSgTERT00200486 3946 0.3575 (1069/2990) 0.94 * * Os_TE_698486 Chr11 23727589 23727590 - CACTA-H 1152 0.0007 (2/2979) 0 * * Os_TE_698483 Chr11 23727504 23727505 + ORSiTERTOOT00441 4741 0.1733 (438/2527) 0 * * Os_TE_698469 Chr11 23725670 23725671 + RIRE2_LTR 11306 0.0030 (7/2367) 0 * * Os_TE_698464 Chr11 23723861 23710427 + RETROSAT4_LTR 13504 0.1726 (414/2399) 0.92 Intact Os_TE_698458 Os_TE_698458 Chr11 23710427 23723861 - RETROSAT4_LTR 13504 0.1844 (448/2429) 1 Intact Os_TE_698464 Os_TE_698440 Chr11 23707282 23707283 - TELIA 141 0.2831 (845/2985) 0 * Os_TE_698439 Os_TE_698439 Chr11 23707276 23707275 + TELIA 141 0.2811 (837/2978) 0 * Os_TE_698440 Os_TE_698429 Chr11 23704235 23704236 + RIREX_LTR 8828 0.0074 (22/2992) 0 * Os_TE_698428 Os_TE_698428 Chr11 23704231 23704230 - RIREX_LTR 8828 0.0067 (20/2967) 0 * Os_TE_698429 Os_TE_698426 Chr11 23702745 23702600 - TNR2A 152 0.2146 (616/2870) 1 Intact Os_TE_698425 Os_TE_698425 Chr11 23702599 23702743 - TNR2A 152 0.2132 (612/2870) 1 Intact Os_TE_698426 Os_TE_698424 Chr11 23702484 23702485 + ORSgTETNOOT01930 140 0.0413 (123/2980) 0 * Os_TE_698423 Os_TE_698423 Chr11 23702479 23702478 - ORSgTEMT00502257 142 0.0400 (119/2977) 0 * Os_TE_698424 Os_TE_698412 Chr11 23700698 23700697 + RETROSAT4_LTR 13504 0.0086 (22/2555) 0 * * Os_TE_698409 Chr11 23700181 23700182 + RIREX_LTR 8828 0.0004 (1/2719) 0 * Os_TE_698408 Os_TE_698408 Chr11 23700177 23700176 - RIREX_LTR 8828 0.0004 (1/2720) 0 * Os_TE_698409 Os_TE_698338 Chr11 23683373 23683374 - TRUNCATOR2_LTR 2904 0.0041 (11/2693) 0 * Os_TE_698337 Os_TE_698337 Chr11 23683369 23683368 + ORSiTERTOOT00028 8600 0.0037 (10/2702) 0 * Os_TE_698338 Os_TE_698335 Chr11 23682863 23682862 - CLOUD 734 0.1147 (228/1988) 0 * * Os_TE_698333 Chr11 23682406 23682407 - INDITTO 263 0.0008 (2/2651) 0 * Os_TE_698332 Os_TE_698332 Chr11 23682404 23682403 - ORSgTETNOOT00053 263 0.0008 (2/2654) 0 * Os_TE_698333 Os_TE_698331 Chr11 23682345 23682346 - ORSgTEMT02400179 221 0.0040 (9/2225) 0 * Os_TE_698330 Os_TE_698330 Chr11 23682344 23682343 - TYPEM 227 0.0037 (10/2679) 0 * Os_TE_698331 Os_TE_698327 Chr11 23678718 23678719 + TRUNCATOR2_LTR 2904 0.0036 (10/2741) 0 * Os_TE_698326 Os_TE_698326 Chr11 23678714 23678713 - TRUNCATOR2_LTR 2904 0.0042 (11/2605) 0 * Os_TE_698327 Os_TE_698324 Chr11 23677722 23677721 - COPI2_LTR 4733 0.1380 (378/2739) 0 * * Os_TE_698321 Chr11 23675003 23675004 + SZ-52_LTR 13107 0.0803 (219/2728) 0 * Os_TE_698320 Os_TE_698320 Chr11 23674999 23674998 - SZ-52_LTR 13107 0.0776 (212/2731) 0 * Os_TE_698321 Os_TE_698303 Chr11 23665732 23665733 + ORSiCMCM00100019 2717 0.0014 (4/2955) 0 * Os_TE_698302 Os_TE_698302 Chr11 23665728 23665727 - TRUNCATOR2_LTR 2904 0.0017 (5/2987) 0 * Os_TE_698303 Os_TE_698249 Chr11 23640798 23640797 - ORSgTERT00200486 3946 0.0026 (7/2722) 0 * * Os_TE_698239 Chr11 23638487 23638488 - OSTONOR1_LTR 6440 0.0414 (118/2849) 0 * Os_TE_698238 Os_TE_698238 Chr11 23638483 23638482 + OSTONOR1_LTR 6440 0.0414 (123/2970) 0 * Os_TE_698239 Os_TE_698227 Chr11 23635178 23635177 + RIRE2_LTR 11306 0.0017 (5/2957) 0 * * Os_TE_698206 Chr11 23632161 23632160 + MDR2 6967 0.0007 (2/2995) 0 * * Os_TE_698201 Chr11 23628207 23628208 + DASIA-2 1198 0.0389 (96/2467) 0 * Os_TE_698200 Os_TE_698200 Chr11 23628199 23628198 + DASIA-2 1198 0.0227 (62/2732) 0 * Os_TE_698201 Os_TE_698198 Chr11 23628060 23628059 - TYPEM 227 0.0140 (41/2923) 0 * * Os_TE_698193 Chr11 23627547 23627546 + SZ-40LTR 2465 0.0003 (1/2983) 0 * * Os_TE_698177 Chr11 23621329 23621330 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_698176 Os_TE_698176 Chr11 23621325 23621324 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_698177 Os_TE_698170 Chr11 23619805 23619806 + TELIA 141 0.0030 (9/2993) 0 * * Os_TE_698164 Chr11 23614374 23614373 + STOWAWAY51_OS 246 0.0004 (1/2571) 0 * Os_TE_698163 Os_TE_698163 Chr11 23614368 23614369 - STOWAWAY51_OS 246 0.0003 (1/2986) 0 * Os_TE_698164 Os_TE_698162 Chr11 23614056 23614055 - TYPEM 227 0.1260 (377/2993) 0 * * Os_TE_698155 Chr11 23607510 23607511 - OLO24 345 0.0013 (4/2964) 0 * * Os_TE_698154 Chr11 23607072 23607071 + ORSgTEMT00100272 356 0.3145 (884/2811) 0.83 * * Os_TE_698151 Chr11 23606669 23607071 + OSTE18 129 0.6854 (1022/1491) 1 Intact * Os_TE_698144 Chr11 23565690 23565691 + ORSgTEMT03000039 377 0.0013 (4/2992) 0 * Os_TE_698143 Os_TE_698143 Chr11 23565682 23565681 - ORSgTEMT03000007 372 0.0013 (4/2990) 0 * Os_TE_698144 Os_TE_698141 Chr11 23564895 23564894 + COPIA2-LTR_OS 6433 0.0003 (1/2904) 0 * * Os_TE_698140 Chr11 23564558 23564557 + ORSgTEMT00502215 139 0.0867 (243/2804) 0 * Os_TE_698139 Os_TE_698139 Chr11 23564557 23564558 + ORSgTEMT00501023 149 0.0587 (161/2742) 0 * Os_TE_698140 Os_TE_698136 Chr11 23563810 23563811 + RIREX_LTR 8828 0.0007 (2/2832) 0 * Os_TE_698135 Os_TE_698135 Chr11 23563806 23563805 - RIREX_LTR 8828 0.0007 (2/2847) 0 * Os_TE_698136 Os_TE_698134 Chr11 23563280 23563281 + SPMLIKE 10989 0.1658 (470/2835) 0 * * Os_TE_698132 Chr11 23563091 23563090 + SPMLIKE 10989 0.0014 (4/2838) 0 * * Os_TE_698131 Chr11 23562969 23562968 + DITAILA 257 0.0004 (1/2785) 0 * Os_TE_698130 Os_TE_698130 Chr11 23562965 23562966 - DITAILA 257 0.0004 (1/2833) 0 * Os_TE_698131 Os_TE_698112 Chr11 23560031 23560032 - RIREX_LTR 8828 0.0042 (11/2630) 0 * * Os_TE_698111 Chr11 23559394 23559395 - ORSgTETNOOT01760 137 0.0900 (254/2823) 0 * Os_TE_698110 Os_TE_698110 Chr11 23559392 23559391 - ORSgTETNOOT01930 140 0.0892 (258/2891) 0 * Os_TE_698111 Os_TE_698108 Chr11 23559098 23559099 + ORSgTETNOOT00908 242 0.0108 (26/2413) 0 * * Os_TE_698106 Chr11 23558399 23558400 - RIREX_LTR 8828 0.0011 (3/2829) 0 * * Os_TE_698104 Chr11 23558278 23558279 - RIREX_LTR 8828 0.0007 (2/2851) 0 * Os_TE_698103 Os_TE_698103 Chr11 23558274 23558273 + RIREX_LTR 8828 0.0007 (2/2851) 0 * Os_TE_698104 Os_TE_698100 Chr11 23553293 23553292 - ORSgTEMT02400246 177 0.0165 (46/2796) 0 * * Os_TE_698093 Chr11 23551770 23551771 - COPIA1-LTR_OS 9292 0.0061 (4/660) 0 * Os_TE_698092 Os_TE_698092 Chr11 23551766 23551765 + COPIA1-LTR_OS 9292 0.0053 (3/565) 0 * Os_TE_698093 Os_TE_698080 Chr11 23546376 23545714 + COPIA2-LTR_OS 6433 0.7840 (646/824) 1 Intact Os_TE_698079 Os_TE_698079 Chr11 23545712 23546375 - COPIA2-LTR_OS 6433 0.6546 (667/1019) 1 Intact Os_TE_698080 Os_TE_698077 Chr11 23545599 23545598 + RIREX_LTR 8828 0.0010 (1/1004) 0 * * Os_TE_698074 Chr11 23544996 23545149 - ORSgTEMT01701458 154 0.6643 (643/968) 1 Intact * Os_TE_698070 Chr11 23544076 23543792 + ORSgTEMT05200107 272 0.6585 (669/1016) 1 Intact * Os_TE_698065 Chr11 23543441 23543440 - ZM13-2_OS 108 0.3452 (348/1008) 0 * * Os_TE_698058 Chr11 23540743 23540742 - OSMAR1 5265 0.0020 (2/1011) 0 * Os_TE_698057 Os_TE_698057 Chr11 23540740 23540741 + OSMAR1 5265 0.0010 (1/1020) 0 * Os_TE_698058 Os_TE_698036 Chr11 23533756 23533755 - OSTE24 683 0.0010 (1/997) 0 * * Os_TE_698021 Chr11 23523916 23523917 + ORSiCMCM00100019 2717 0.0196 (18/917) 0 * Os_TE_698020 Os_TE_698020 Chr11 23523912 23523911 - TRUNCATOR2_LTR 2904 0.0198 (18/910) 0 * Os_TE_698021 Os_TE_698008 Chr11 23518112 23518113 + OSTONOR1_LTR 6440 0.0011 (1/933) 0 * * Os_TE_698001 Chr11 23516200 23516201 - RIREX_LTR 8828 0.0503 (48/955) 0 * Os_TE_698000 Os_TE_698000 Chr11 23516196 23516195 + RIREX_LTR 8828 0.0514 (50/972) 0 * Os_TE_698001 Os_TE_697994 Chr11 23514592 23514593 - F569 228 0.0018 (2/1085) 0 * * Os_TE_697992 Chr11 23514456 23514455 - ENSPM4_OS 11610 0.0007 (1/1370) 0 * * Os_TE_697988 Chr11 23513144 23513145 - MUDRN3_OS 903 0.0010 (1/1013) 0 * Os_TE_697987 Os_TE_697987 Chr11 23513136 23513135 - MUDRN3_OS 903 0.0010 (1/1011) 0 * Os_TE_697988 Os_TE_697981 Chr11 23508518 23508517 + SEVERIN-2 1952 0.0039 (4/1016) 0 * * Os_TE_697977 Chr11 23507029 23507030 + ORSgTEMT00600272 361 0.0294 (30/1019) 0 * Os_TE_697976 Os_TE_697976 Chr11 23507025 23507024 + ORSgTEMT00600376 329 0.0295 (30/1016) 0 * Os_TE_697977 Os_TE_697975 Chr11 23506806 23506807 - CASTAWAY 364 0.0309 (31/1002) 0 * Os_TE_697974 Os_TE_697974 Chr11 23506803 23506802 - ORSgTEMT00600304 361 0.0288 (29/1008) 0 * Os_TE_697975 Os_TE_697973 Chr11 23506695 23506696 + SPMLIKE 10989 0.0199 (20/1007) 0 * Os_TE_697972 Os_TE_697972 Chr11 23506693 23506692 - ORSgTETN00200001 10994 0.0161 (16/994) 0 * Os_TE_697973 Os_TE_697933 Chr11 23495713 23495714 - OLO24 345 0.0039 (4/1031) 0 * Os_TE_697932 Os_TE_697932 Chr11 23495711 23495710 + OLO24 345 0.0039 (4/1025) 0 * Os_TE_697933 Os_TE_697923 Chr11 23493894 23493895 + SEVERIN-2 1952 0.0414 (61/1473) 0 * * Os_TE_697912 Chr11 23491771 23491533 - ORSgTEMT01601432 239 0.5839 (807/1382) 1 Intact Os_TE_697911 Os_TE_697911 Chr11 23491532 23491771 - ORSgTEMT01600152 226 0.8431 (806/956) 1 Intact Os_TE_697912 Os_TE_697909 Chr11 23491423 23491424 - TELIA 141 0.1493 (145/971) 0 * * Os_TE_697900 Chr11 23488179 23488178 - STOWAWAY21_OS 243 0.1787 (180/1007) 0 * * Os_TE_697867 Chr11 23475412 23475411 - RIREX_LTR 8828 0.0512 (51/996) 0 * * Os_TE_697864 Chr11 23474654 23475254 - CLOUD-2 711 0.6177 (971/1572) 1 Intact * Os_TE_697844 Chr11 23466787 23467232 - ORSgTEMT00901723 248 0.8896 (1007/1132) 1 Intact * Os_TE_697829 Chr11 23463176 23463177 + ORSgTEMT01600768 234 0.0007 (2/2809) 0 * * Os_TE_697828 Chr11 23463023 23463024 - NDNA1TNA_OS 334 0.0019 (4/2094) 0 * Os_TE_697827 Os_TE_697827 Chr11 23463021 23463020 + NDNA1TNA_OS 334 0.0014 (4/2780) 0 * Os_TE_697828 Os_TE_697826 Chr11 23462881 23462882 - ORSgTEMT01601834 234 0.4122 (406/985) 0 * * Os_TE_697825 Chr11 23462266 23462265 - COPIA2-LTR_OS 6433 0.0004 (1/2381) 0 * * Os_TE_697823 Chr11 23461573 23461574 - ORSgTEMT01600314 233 0.0227 (23/1015) 0 * * Os_TE_697821 Chr11 23460362 23460363 - ORSiTERT00100062 5674 0.0018 (3/1685) 0 * Os_TE_697820 Os_TE_697820 Chr11 23460358 23460357 + OSTONOR1_LTR 6440 0.0029 (3/1029) 0 * Os_TE_697821 Os_TE_697818 Chr11 23459897 23459778 - ORSgTEMT00502214 125 0.8267 (854/1033) 1 Intact * Os_TE_697817 Chr11 23459886 23459885 - SZ-9LTR 965 0.2605 (192/737) 0 * * Os_TE_697815 Chr11 23459755 23459894 + ORSgTEMT00502094 140 0.8271 (847/1024) 1 Intact * Os_TE_697808 Chr11 23456687 23456688 + RETROSAT3_LTR 11537 0.0010 (1/1028) 0 * Os_TE_697807 Os_TE_697807 Chr11 23456683 23456682 - RETROSAT2LTRA 3112 0.0010 (1/965) 0 * Os_TE_697808 Os_TE_697806 Chr11 23456350 23456351 + RIREX_LTR 8828 0.0215 (22/1021) 0 * Os_TE_697805 Os_TE_697805 Chr11 23456346 23456345 - RIREX_LTR 8828 0.0215 (22/1024) 0 * Os_TE_697806 Os_TE_697801 Chr11 23455790 23456134 + OLO24 345 0.8288 (823/993) 1 Intact * Os_TE_697798 Chr11 23455027 23454831 + ORSgTEMT02000020 195 0.8347 (818/980) 1 Intact * Os_TE_697776 Chr11 23444875 23444876 - MuDR3_OS 8604 0.0078 (23/2965) 0 * * Os_TE_697774 Chr11 23444695 23444696 - SZ-17_LTR 3387 0.0194 (56/2894) 0 * * Os_TE_697762 Chr11 23442633 23442632 + RETROSAT2LTR 12796 0.3765 (1017/2701) 0 * * Os_TE_697761 Chr11 23442227 23442228 - SZ-40LTR 2465 0.0007 (2/2845) 0 * Os_TE_697760 Os_TE_697760 Chr11 23442223 23442222 + SZ-40LTR 2465 0.0007 (2/2824) 0 * Os_TE_697761 Os_TE_697757 Chr11 23441877 23442086 - COWARD-3 221 0.8352 (948/1135) 1 Intact * Os_TE_697755 Chr11 23441578 23441577 + ORSgTEMT01601591 242 0.0017 (5/2995) 0 * Os_TE_697754 Os_TE_697754 Chr11 23441575 23441576 + ORSgTEMT01601591 242 0.0017 (5/2990) 0 * Os_TE_697755 Os_TE_697751 Chr11 23441085 23441086 - RIREX_LTR 8828 0.0003 (1/2973) 0 * Os_TE_697750 Os_TE_697750 Chr11 23441081 23441080 + RIREX_LTR 8828 0.0003 (1/2989) 0 * Os_TE_697751 Os_TE_697747 Chr11 23439781 23439782 + INDITTO 263 0.0080 (24/2985) 0 * Os_TE_697746 Os_TE_697746 Chr11 23439779 23439778 - INDITTO 263 0.0077 (23/2974) 0 * Os_TE_697747 Os_TE_697744 Chr11 23439584 23439583 - RIRE2_LTR 11306 0.0003 (1/2973) 0 * * Os_TE_697739 Chr11 23438532 23438531 + ORSgTEMT00502437 145 0.5840 (1735/2971) 0 * * Os_TE_697737 Chr11 23438300 23438299 + ORSgTEMT01601525 239 0.0007 (2/2973) 0 * Os_TE_697736 Os_TE_697736 Chr11 23438297 23438298 - ORSgTEMT01602413 239 0.0013 (4/2975) 0 * Os_TE_697737 Os_TE_697732 Chr11 23437817 23437818 + ORSgTETNOOT00908 242 0.0020 (6/2956) 0 * * Os_TE_697719 Chr11 23427193 23427192 - STOWAWAY11_OS 292 0.1522 (285/1872) 0 * * Os_TE_697714 Chr11 23426570 23426571 - MuDR4_OS 7610 0.0006 (1/1708) 0 * * Os_TE_697713 Chr11 23426058 23426059 + NDNA1TNA_OS 334 0.0008 (2/2520) 0 * Os_TE_697712 Os_TE_697712 Chr11 23426057 23426056 - NDNA1TNA_OS 334 0.0007 (2/2975) 0 * Os_TE_697713 Os_TE_697710 Chr11 23424518 23424519 + SZ-40LTR 2465 0.3286 (976/2970) 0 * * Os_TE_697708 Chr11 23422979 23422978 - COPI2_LTR 4733 0.0003 (1/2996) 0 * * Os_TE_697707 Chr11 23419248 23419247 - ORSgTEMT01602152 236 0.0070 (21/2985) 0 * * Os_TE_697706 Chr11 23419008 23419009 + MPING 430 0.0011 (3/2746) 0 * Os_TE_697705 Os_TE_697705 Chr11 23419006 23419005 - MPING 430 0.0007 (2/2996) 0 * Os_TE_697706 Os_TE_697697 Chr11 23415501 23415502 + ORSgTEMT03000028 382 0.0123 (33/2688) 0 * * Os_TE_697687 Chr11 23408920 23408921 + SZ-62LTR 3649 0.0015 (1/680) 0 * Os_TE_697686 Os_TE_697686 Chr11 23408916 23408915 - SZ-62LTR 3649 0.0514 (37/720) 0 * Os_TE_697687 Os_TE_697672 Chr11 23399170 23399169 - TREP215 239 0.0541 (85/1572) 0 * Os_TE_697671 Os_TE_697671 Chr11 23399161 23399162 + ORSgTEMT01602083 237 0.0527 (83/1575) 0 * Os_TE_697672 Os_TE_697669 Chr11 23398806 23398805 + TWIFBIG 3567 0.0013 (2/1538) 0 * * Os_TE_697665 Chr11 23398645 23398227 - ORSgTEMT00300160 419 0.5212 (1145/2197) 1 Intact * Os_TE_697661 Chr11 23397933 23397783 - ORSgTEMT00500110 151 0.5474 (1329/2428) 1 Intact Os_TE_697660 Os_TE_697660 Chr11 23397781 23397931 - ORSgTEMT00502293 151 0.5638 (1330/2359) 1 Intact Os_TE_697661 Os_TE_697659 Chr11 23396823 23396824 + OSTONOR1_LTR 6440 0.0080 (10/1249) 0 * * Os_TE_697631 Chr11 23390040 23390041 + COPIA2-LTR_OS 6433 0.0008 (1/1225) 0 * * Os_TE_697629 Chr11 23389740 23389282 + CASTAWAY 364 0.5758 (703/1221) 1 Intact Os_TE_697628 Os_TE_697628 Chr11 23389281 23389740 - CASTAWAY 364 0.6384 (701/1098) 1 Intact Os_TE_697629 Os_TE_697624 Chr11 23388395 23388264 - ORSgTETNOOT00118 134 0.5733 (684/1193) 1 Intact Os_TE_697621 Os_TE_697621 Chr11 23388179 23388393 - ORSgTEMT00502171 134 0.7708 (713/925) 1 Intact Os_TE_697624 Os_TE_697616 Chr11 23388015 23388152 - ORSgTETNOOT01930 140 0.5318 (593/1115) 1 Intact * Os_TE_697614 Chr11 23387915 23387916 + STOWAWAY21_OS 243 0.0017 (2/1199) 0 * * Os_TE_697613 Chr11 23387879 23387878 + STOWAWAY51_OS 246 0.0008 (1/1196) 0 * * Os_TE_697604 Chr11 23387168 23386828 - OLO24 345 0.6929 (704/1016) 1 Intact * Os_TE_697596 Chr11 23386460 23386822 - ORSgTEMT00600484 344 0.5724 (680/1188) 1 Intact * Os_TE_697581 Chr11 23380656 23382167 - ATLANTYS-LTR_OS 13740 0.8058 (668/829) 1 Solo_LTR * Os_TE_697575 Chr11 23378669 23378668 - ORSiTETNOOT00134 607 0.0008 (1/1200) 0 * * Os_TE_697557 Chr11 23373371 23373035 + ORSgTEMT00100949 340 0.2320 (676/2914) 1 Intact * Os_TE_697544 Chr11 23361689 23361690 - RIREX_LTR 8828 0.0007 (2/2924) 0 * Os_TE_697543 Os_TE_697543 Chr11 23361685 23361684 + RIREX_LTR 8828 0.0007 (2/2926) 0 * Os_TE_697544 Os_TE_697542 Chr11 23361250 23361249 - ORSgTEMT02400248 224 0.3457 (1008/2916) 0 * * Os_TE_697541 Chr11 23361249 23361250 - TYPEM 227 0.3451 (1007/2918) 0 * Os_TE_697540 Os_TE_697540 Chr11 23361244 23361243 + ORSgTEMT02400054 220 0.3457 (1009/2919) 0 * Os_TE_697541 Os_TE_697535 Chr11 23360882 23360733 - ORSgTETNOOT01243 137 0.5147 (1086/2110) 1 Intact * Os_TE_697519 Chr11 23359866 23359867 - ORSgTETNOOT01930 140 0.0003 (1/2902) 0 * Os_TE_697518 Os_TE_697518 Chr11 23359864 23359863 - ORSgTETNOOT01760 137 0.0003 (1/2904) 0 * Os_TE_697519 Os_TE_697517 Chr11 23359665 23359664 - ORSgTEMT01601768 238 0.0010 (3/2905) 0 * * Os_TE_697515 Chr11 23359485 23359484 + RIREX_LTR 8828 0.0003 (1/2883) 0 * * Os_TE_697512 Chr11 23359131 23358992 + ORSgTEMT00500095 150 0.4637 (1285/2771) 1 Intact * Os_TE_697506 Chr11 23358572 23358571 + ORSgTEMT01601122 212 0.0185 (54/2926) 0 * Os_TE_697505 Os_TE_697505 Chr11 23358569 23358570 + ORSgTEMT01601122 212 0.0168 (50/2980) 0 * Os_TE_697506 Os_TE_697503 Chr11 23357743 23357744 - ORSgTEMT01800062 435 0.0024 (7/2937) 0 * * Os_TE_697485 Chr11 23349008 23349007 + ORSgTEMT01700376 152 0.7508 (678/903) 0 * * Os_TE_697408 Chr11 23290068 23290069 + HELITRON3_OS 12693 0.0861 (204/2369) 0 * * Os_TE_697401 Chr11 23289532 23289531 + CACTA-B 1103 0.0178 (51/2867) 0 * * Os_TE_697392 Chr11 23287607 23287608 + INDITTO 263 0.0008 (2/2581) 0 * Os_TE_697391 Os_TE_697391 Chr11 23287605 23287604 - INDITTO 263 0.0008 (2/2579) 0 * Os_TE_697392 Os_TE_697386 Chr11 23286910 23286911 + RIRE2_LTR 11306 0.0028 (8/2850) 0 * Os_TE_697385 Os_TE_697385 Chr11 23286906 23286905 - RIRE2_LTR 11306 0.0036 (9/2491) 0 * Os_TE_697386 Os_TE_697379 Chr11 23285577 23285576 + RIRE2_LTR 11306 0.0004 (1/2509) 0 * * Os_TE_697376 Chr11 23284926 23284927 + OSTE33 1012 0.0190 (53/2796) 0 * * Os_TE_697374 Chr11 23284166 23284167 - TYPEM 227 0.0397 (119/2994) 0 * Os_TE_697373 Os_TE_697373 Chr11 23284165 23284164 - ORSgTEMT02400179 221 0.0399 (119/2983) 0 * Os_TE_697374 Os_TE_697371 Chr11 23283660 23283659 - GYPSY-A_LTR 8951 0.0451 (135/2992) 0 * * Os_TE_697369 Chr11 23279893 23279894 + ORSgTEMT03400012 238 0.1334 (399/2991) 0 * * Os_TE_697350 Chr11 23276028 23276029 + Cassandra_OS-LTR 764 0.0008 (2/2631) 0 * * Os_TE_697349 Chr11 23275878 23275879 - RIREX_LTR 8828 0.0008 (2/2555) 0 * Os_TE_697348 Os_TE_697348 Chr11 23275874 23275873 + RIREX_LTR 8828 0.0008 (2/2620) 0 * Os_TE_697349 Os_TE_697345 Chr11 23273601 23273602 + MUDRN3_OS 903 0.0193 (49/2545) 0 * * Os_TE_697337 Chr11 23271315 23271314 - OSLINE1-2 7128 0.3685 (1082/2936) 0 * * Os_TE_697336 Chr11 23271146 23271145 - ORSgTEMT01601432 239 0.1497 (448/2992) 0 * * Os_TE_697325 Chr11 23266585 23266586 - RIREX_LTR 8828 0.0854 (255/2985) 0 * Os_TE_697324 Os_TE_697324 Chr11 23266581 23266580 + RIREX_LTR 8828 0.0868 (259/2984) 0 * Os_TE_697325 Os_TE_697323 Chr11 23266380 23266381 - ORSgTETN00200001 10994 0.0043 (13/2991) 0 * Os_TE_697322 Os_TE_697322 Chr11 23266378 23266377 + SPMLIKE 10989 0.0040 (12/2991) 0 * Os_TE_697323 Os_TE_697312 Chr11 23262812 23262811 + CACTA-H 1152 0.0022 (6/2704) 0 * * Os_TE_697305 Chr11 23262124 23262125 - MUDRN3_OS 903 0.0377 (109/2889) 0 * * Os_TE_697296 Chr11 23261344 23261345 - INDITTO 263 0.0098 (28/2861) 0 * Os_TE_697294 Os_TE_697294 Chr11 23261331 23261330 + ORSgTETNOOT00032 218 0.0004 (1/2835) 0 * Os_TE_697296 Os_TE_697292 Chr11 23260577 23256905 - SZ-35LTR 3853 0.7725 (2150/2783) 1 Intact * Os_TE_697279 Chr11 23255242 23255243 + MuDR4_OS 7610 0.0004 (1/2700) 0 * * Os_TE_697274 Chr11 23252720 23252721 - ORSgTEMT02400179 221 0.0003 (1/2994) 0 * Os_TE_697273 Os_TE_697273 Chr11 23252718 23252717 - ORSgTEMT01602413 239 0.0010 (3/2992) 0 * Os_TE_697274 Os_TE_697264 Chr11 23251974 23251233 + CLOUD 734 0.5346 (1461/2733) 1 Intact Os_TE_697262 Os_TE_697262 Chr11 23251233 23251969 + CLOUD 734 0.5417 (1461/2697) 1 Intact Os_TE_697264 Os_TE_697260 Chr11 23251154 23251153 - ORSgTETN00200001 10994 0.0015 (4/2742) 0 * * Os_TE_697258 Chr11 23250621 23250620 + ORSgTEMT02400041 225 0.1519 (400/2634) 0 * Os_TE_697257 Os_TE_697257 Chr11 23250619 23250620 - ORSgTEMT02400179 221 0.1566 (395/2522) 0 * Os_TE_697258 Os_TE_697250 Chr11 23249072 23249073 - TRUNCATOR2_LTR 2904 0.4459 (1149/2577) 0 * * Os_TE_697249 Chr11 23249029 23248671 - ORSgTEMT03800066 376 0.5223 (1429/2736) 1 Intact * Os_TE_697247 Chr11 23248603 23248602 + DS-RICE4N 715 0.0040 (10/2491) 0 * * Os_TE_697242 Chr11 23247768 23247767 - COPIA2-LTR_OS 6433 0.0003 (1/2905) 0 * * Os_TE_697241 Chr11 23247592 23247593 - ORSgTERT00201216 11284 0.0622 (172/2764) 0 * * Os_TE_697238 Chr11 23247051 23247052 - ORSgTETN00200001 10994 0.0003 (1/2966) 0 * * Os_TE_697236 Chr11 23246907 23246908 - ORSgTETN00200001 10994 0.0010 (3/2914) 0 * Os_TE_697235 Os_TE_697235 Chr11 23246905 23246904 + SPMLIKE 10989 0.0011 (3/2811) 0 * Os_TE_697236 Os_TE_697234 Chr11 23246411 23246410 - ENSPM4_OS 11610 0.1658 (495/2985) 0 * * Os_TE_697229 Chr11 23246106 23246105 - COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * * Os_TE_697227 Chr11 23246065 23246066 + TRUNCATOR 2918 0.0358 (107/2988) 0 * * Os_TE_697225 Chr11 23245994 23245995 - NDNA2TNA_OS 346 0.0124 (37/2991) 0 * * Os_TE_697200 Chr11 23240195 23240194 - SEVERIN-2 1952 0.0107 (32/2982) 0 * * Os_TE_697198 Chr11 23240012 23240011 + NDNA1TNA_OS 334 0.0008 (2/2502) 0 * * Os_TE_697197 Chr11 23239660 23239661 - OSTE33 1012 0.0014 (4/2949) 0 * Os_TE_697196 Os_TE_697196 Chr11 23239652 23239651 + OSTE33 1012 0.0014 (4/2945) 0 * Os_TE_697197 Os_TE_697192 Chr11 23237864 23237865 - RIREX_LTR 8828 0.0093 (28/2995) 0 * * Os_TE_697188 Chr11 23234573 23234574 + ORSgTETNOOT00908 242 0.0154 (46/2995) 0 * * Os_TE_697186 Chr11 23233977 23233976 - OSTE20 496 0.0020 (6/2996) 0 * Os_TE_697185 Os_TE_697185 Chr11 23233953 23233954 + OSTE20 496 0.0020 (6/2994) 0 * Os_TE_697186 Os_TE_697181 Chr11 23228457 23228458 - RIRE2_LTR 11306 0.0034 (10/2982) 0 * * Os_TE_697178 Chr11 23228357 23228358 - RIREX_LTR 8828 0.0020 (6/2994) 0 * Os_TE_697177 Os_TE_697177 Chr11 23228353 23228352 + RIREX_LTR 8828 0.0020 (6/2981) 0 * Os_TE_697178 Os_TE_697170 Chr11 23225808 23225807 + SEVERIN-2 1952 0.0007 (2/2981) 0 * * Os_TE_697169 Chr11 23225046 23225047 + COWARD-3 221 0.0010 (3/2970) 0 * * Os_TE_697167 Chr11 23224148 23224147 - CACTA-H 1152 0.0033 (10/2986) 0 * Os_TE_697166 Os_TE_697166 Chr11 23224147 23224148 + CACTA-B 1103 0.0030 (9/2981) 0 * Os_TE_697167 Os_TE_697157 Chr11 23219471 23219108 + CASTAWAY 364 0.5656 (750/1326) 1 Intact Os_TE_697154 Os_TE_697154 Chr11 23219108 23219470 - ORSgTEMT00600085 364 0.5670 (749/1321) 1 Intact Os_TE_697157 Os_TE_697153 Chr11 23219075 23219076 - ORSgTERT00201216 11284 0.0083 (11/1331) 0 * Os_TE_697152 Os_TE_697152 Chr11 23219071 23219070 - RIRE2_LTR 11306 0.0055 (7/1267) 0 * Os_TE_697153 Os_TE_697151 Chr11 23218563 23218564 - RETROSAT3_LTR 11537 0.0030 (4/1318) 0 * Os_TE_697150 Os_TE_697150 Chr11 23218559 23218558 + RETROSAT2LTRA 3112 0.0030 (4/1312) 0 * Os_TE_697151 Os_TE_697142 Chr11 23215068 23215067 - STOWAWAY1_OS 149 0.5800 (1715/2957) 0 * Os_TE_697141 Os_TE_697141 Chr11 23215067 23215068 + STOWAWAY50_OS 174 0.5825 (1729/2968) 0 * Os_TE_697142 Os_TE_697130 Chr11 23211203 23211202 - GAIJIN 147 0.5774 (1716/2972) 0 * Os_TE_697129 Os_TE_697129 Chr11 23211202 23211203 + ORSgTEMT00500512 153 0.5817 (1730/2974) 0 * Os_TE_697130 Os_TE_697127 Chr11 23210688 23210689 - MuDR-5_OS 17471 0.0010 (3/2981) 0 * * Os_TE_697119 Chr11 23209435 23209434 - ORSgTEMT01600374 210 0.5765 (1714/2973) 0 * * Os_TE_697118 Chr11 23209421 23209422 + ORSgTETNOOT00792 273 0.0414 (123/2974) 0 * * Os_TE_697115 Chr11 23208744 23208745 - RIRE2_LTR 11306 0.0013 (4/2975) 0 * * Os_TE_697111 Chr11 23207854 23207855 + SPMLIKE 10989 0.0003 (1/2862) 0 * Os_TE_697110 Os_TE_697110 Chr11 23207852 23207851 - ORSgTETN00200001 10994 0.0004 (1/2778) 0 * Os_TE_697111 Os_TE_697108 Chr11 23206870 23206871 + RIREX_LTR 8828 0.0047 (14/2976) 0 * Os_TE_697107 Os_TE_697107 Chr11 23206866 23206865 - RIREX_LTR 8828 0.0044 (13/2983) 0 * Os_TE_697108 Os_TE_697106 Chr11 23206444 23206445 - INDITTO 263 0.0078 (23/2944) 0 * Os_TE_697105 Os_TE_697105 Chr11 23206442 23206441 + INDITTO 263 0.0081 (24/2951) 0 * Os_TE_697106 Os_TE_697096 Chr11 23205596 23205595 + OSMU5 4881 0.1645 (461/2802) 0 * Os_TE_697095 Os_TE_697095 Chr11 23205590 23205591 + OSTE15 1168 0.1611 (465/2887) 0 * Os_TE_697096 Os_TE_697093 Chr11 23204035 23204036 + RETRO2_LTR 12874 0.0596 (176/2955) 0 * Os_TE_697092 Os_TE_697092 Chr11 23204031 23204030 - RETRO2_LTR 12874 0.0640 (190/2969) 0 * Os_TE_697093 Os_TE_697090 Chr11 23203638 23203637 - ORSgTEMT01600559 234 0.0015 (2/1315) 0 * * Os_TE_697088 Chr11 23203129 23203128 - RIREX_LTR 8828 0.0003 (1/2995) 0 * * Os_TE_697086 Chr11 23203028 23203029 + DS-RICE4N 715 0.2012 (594/2953) 0 * Os_TE_697085 Os_TE_697085 Chr11 23203021 23203020 - DS-RICE2N 613 0.2055 (609/2964) 0 * Os_TE_697086 Os_TE_697084 Chr11 23202741 23202742 + RETRO2_LTR 12874 0.2556 (654/2559) 0 * Os_TE_697083 Os_TE_697083 Chr11 23202737 23202736 - RETRO2_LTR 12874 0.3650 (1075/2945) 0 * Os_TE_697084 Os_TE_697081 Chr11 23202726 23202725 - RETROSAT5_LTR 13878 0.0016 (3/1919) 0 * * Os_TE_697079 Chr11 23202374 23202373 + ORSiTERT00200145 12238 0.0145 (41/2830) 0 * * Os_TE_697078 Chr11 23201747 23201748 + INDITTO 263 0.0010 (3/2888) 0 * Os_TE_697077 Os_TE_697077 Chr11 23201745 23201744 - INDITTO 263 0.0010 (3/2896) 0 * Os_TE_697078 Os_TE_697072 Chr11 23200534 23200105 + MPING 430 0.0316 (93/2946) 1 Intact Os_TE_697071 Os_TE_697071 Chr11 23200105 23200534 - MPING 430 0.0317 (94/2962) 1 Intact Os_TE_697072 Os_TE_697065 Chr11 23190389 23190390 - ORSgTEMT02400179 221 0.0010 (3/2911) 0 * Os_TE_697064 Os_TE_697064 Chr11 23190388 23190387 - TYPEM 227 0.0010 (3/2903) 0 * Os_TE_697065 Os_TE_697062 Chr11 23188125 23188126 + ORSgTETNOOT01219 231 0.0687 (203/2954) 0 * Os_TE_697060 Os_TE_697060 Chr11 23188117 23188116 + ORSgTETNOOT00908 242 0.0700 (208/2971) 0 * Os_TE_697062 Os_TE_697040 Chr11 23176597 23176596 + MuDR2_OS 6770 0.0107 (31/2910) 0 * * Os_TE_697039 Chr11 23176377 23176378 - RETRO1_LTR 8314 0.0050 (15/2984) 0 * Os_TE_697038 Os_TE_697038 Chr11 23176373 23176372 + RETRO2A_LTR 12895 0.0047 (14/2983) 0 * Os_TE_697039 Os_TE_697034 Chr11 23172384 23172383 - COPIA2-LTR_OS 6433 0.0004 (1/2818) 0 * * Os_TE_697033 Chr11 23171702 23171703 + NDNA1TNA_OS 334 0.0010 (3/2966) 0 * Os_TE_697032 Os_TE_697032 Chr11 23171700 23171699 - NDNA1TNA_OS 334 0.0010 (3/2967) 0 * Os_TE_697033 Os_TE_697028 Chr11 23171482 23171483 + INDITTO 263 0.0003 (1/2998) 0 * * Os_TE_697012 Chr11 23168495 23168496 + MPING 430 0.0003 (1/2996) 0 * Os_TE_697011 Os_TE_697011 Chr11 23168493 23168492 - MPING 430 0.0003 (1/2994) 0 * Os_TE_697012 Os_TE_696988 Chr11 23157202 23157201 - MuDR4_OS 7610 0.0010 (3/2937) 0 * Os_TE_696987 Os_TE_696987 Chr11 23157187 23157188 - MuDR4_OS 7610 0.0010 (3/2921) 0 * Os_TE_696988 Os_TE_696984 Chr11 23156546 23156545 - AMYLTP 383 0.0004 (1/2444) 0 * * Os_TE_696983 Chr11 23156462 23156463 - AMYLTP 383 0.0206 (54/2622) 0 * * Os_TE_696980 Chr11 23156314 23156313 + ORSgTEMT01602181 239 0.0016 (4/2471) -1 * * Os_TE_696975 Chr11 23155478 23155479 - RIREX_LTR 8828 0.0034 (4/1184) 0 * * Os_TE_696967 Chr11 23154232 23154233 + RIREX_LTR 8828 0.0003 (1/2990) 0 * * Os_TE_696963 Chr11 23153269 23153270 - RIREX_LTR 8828 0.0003 (1/2994) 0 * Os_TE_696962 Os_TE_696962 Chr11 23153265 23153264 + RIREX_LTR 8828 0.0003 (1/2956) 0 * Os_TE_696963 Os_TE_696947 Chr11 23146482 23146481 - INDITTO 263 0.0165 (46/2793) 0 * * Os_TE_696945 Chr11 23145847 23145848 + RETRO1_LTR 8314 0.0185 (54/2912) 0 * Os_TE_696944 Os_TE_696944 Chr11 23145843 23145842 - RETRO1_LTR 8314 0.0182 (53/2915) 0 * Os_TE_696945 Os_TE_696932 Chr11 23139259 23139260 + RIREX_LTR 8828 0.0258 (66/2559) 0 * Os_TE_696931 Os_TE_696931 Chr11 23139255 23139254 - RIREX_LTR 8828 0.0226 (67/2964) 0 * Os_TE_696932 Os_TE_696930 Chr11 23139238 23139237 + STOWAWAY51_OS 246 0.4197 (1228/2926) 0 * Os_TE_696929 Os_TE_696929 Chr11 23139232 23139233 - STOWAWAY51_OS 246 0.4170 (1238/2969) 0 * Os_TE_696930 Os_TE_696890 Chr11 23123750 23123751 + COPI2_LTR 4733 0.0003 (1/2982) 0 * Os_TE_696889 Os_TE_696889 Chr11 23123746 23123745 - COPI2_LTR 4733 0.0003 (1/2985) 0 * Os_TE_696890 Os_TE_696888 Chr11 23123261 23123262 + OSTONOR1_LTR 6440 0.0003 (1/2988) 0 * * Os_TE_696870 Chr11 23114066 23114067 - TRUNCATOR 2918 0.2815 (838/2977) 0 * * Os_TE_696869 Chr11 23113353 23113354 - SPMLIKE 10989 0.0003 (1/2993) 0 * * Os_TE_696854 Chr11 23109072 23109073 - COPIA2-LTR_OS 6433 0.0344 (99/2877) 0 * Os_TE_696853 Os_TE_696853 Chr11 23109068 23109067 + COPIA2-LTR_OS 6433 0.0301 (85/2820) 0 * Os_TE_696854 Os_TE_696847 Chr11 23107262 23107263 - GAIJIN 147 0.0017 (5/2889) 0 * * Os_TE_696846 Chr11 23106149 23106150 - ORSgTETN00200001 10994 0.0018 (5/2726) 0 * Os_TE_696845 Os_TE_696845 Chr11 23106147 23106146 + SPMLIKE 10989 0.0200 (55/2752) 0 * Os_TE_696846 Os_TE_696844 Chr11 23105904 23105905 - ORSgTETNOOT00762 266 0.0169 (47/2785) 0 * Os_TE_696843 Os_TE_696843 Chr11 23105902 23105901 - INDITTO 263 0.0159 (44/2768) 0 * Os_TE_696844 Os_TE_696840 Chr11 23105339 23105340 + ORSgTEMT01602181 239 0.0017 (5/2889) 0 * * Os_TE_696834 Chr11 23101495 23101496 + RETROSAT4_LTR 13504 0.0064 (19/2959) 0 * Os_TE_696833 Os_TE_696833 Chr11 23101491 23101490 - SZ-35LTR 3853 0.0070 (20/2869) 0 * Os_TE_696834 Os_TE_696831 Chr11 23101297 23101298 + TRUNCATOR 2918 0.0275 (81/2947) 0 * * Os_TE_696829 Chr11 23100793 23100792 - RETROSAT2LTR 12796 0.2377 (710/2987) 0 * * Os_TE_696828 Chr11 23100722 23086791 - SZ-67LTR 1540 0.3122 (925/2963) 1 Intact * Os_TE_696820 Chr11 23086791 23100722 + RETROSAT5_LTR 13878 0.1218 (356/2922) 1 Intact * Os_TE_696818 Chr11 23085732 23085733 + SZ-67LTR 1540 0.0013 (4/2975) 0 * * Os_TE_696797 Chr11 23077020 23077021 + STOWAWAY9_OS 235 0.0007 (2/2920) 0 * * Os_TE_696795 Chr11 23076669 23076670 - COPIA2-LTR_OS 6433 0.0017 (5/2966) 0 * Os_TE_696794 Os_TE_696794 Chr11 23076665 23076664 + COPIA2-LTR_OS 6433 0.0017 (5/2962) 0 * Os_TE_696795 Os_TE_696793 Chr11 23076239 23076240 - RETRO2_LTR 12874 0.0284 (84/2961) 0 * Os_TE_696792 Os_TE_696792 Chr11 23076235 23076234 + RETRO2_LTR 12874 0.0297 (87/2932) 0 * Os_TE_696793 Os_TE_696789 Chr11 23075522 23075523 - ORSgTEMT02400179 221 0.0013 (4/2978) 0 * * Os_TE_696783 Chr11 23074261 23074262 + ORSgTEMT06100010 269 0.0276 (82/2969) 0 * * Os_TE_696782 Chr11 23074055 23074056 - MuDR2_OS 6770 0.0004 (1/2849) 0 * * Os_TE_696764 Chr11 23069486 23069485 + ORSgTETNOOT00032 218 0.0013 (4/2997) 0 * * Os_TE_696757 Chr11 23067621 23067622 - SC-8_LTR 4951 0.0007 (2/2981) 0 * Os_TE_696756 Os_TE_696756 Chr11 23067617 23067616 + ORSiTERTOOT00381 4988 0.0007 (2/2979) 0 * Os_TE_696757 Os_TE_696746 Chr11 23059706 23059553 - ORSgTEMT01701624 178 0.2564 (549/2141) 1 Intact * Os_TE_696738 Chr11 23059258 23059257 - RETRO1_LTR 8314 0.1594 (470/2949) 0 * * Os_TE_696735 Chr11 23058052 23058053 + WUWU 113 0.8267 (2456/2971) 0 * * Os_TE_696731 Chr11 23057081 23057414 + NDNA1TNA_OS 334 0.1292 (384/2971) 1 Intact * Os_TE_696724 Chr11 23054363 23054364 + COPI2_LTR 4733 0.0481 (142/2952) 0 * Os_TE_696723 Os_TE_696723 Chr11 23054359 23054358 - COPI2_LTR 4733 0.0548 (163/2972) 0 * Os_TE_696724 Os_TE_696703 Chr11 23050911 23050912 - ORSgTEMT01400006 213 0.0008 (2/2508) 0 * * Os_TE_696698 Chr11 23050302 23050303 + RETROSAT4_LTR 13504 0.0013 (3/2315) 0 * * Os_TE_696694 Chr11 23049852 23049853 + RETROSAT4_LTR 13504 0.0016 (4/2572) 0 * Os_TE_696693 Os_TE_696693 Chr11 23049848 23049847 - RETROSAT4_LTR 13504 0.0016 (4/2524) 0 * Os_TE_696694 Os_TE_696679 Chr11 23046330 23046329 + RETROSAT4_LTR 13504 0.0030 (8/2629) 0 * * Os_TE_696677 Chr11 23045997 23045996 + SPMLIKE 10989 0.0004 (1/2618) 0 * * Os_TE_696670 Chr11 23041810 23041811 - RETRO2_LTR 12874 0.0003 (1/2934) 0 * Os_TE_696669 Os_TE_696669 Chr11 23041806 23041805 + RETRO2A_LTR 12895 0.0007 (2/2931) 0 * Os_TE_696670 Os_TE_696659 Chr11 23036641 23039796 - RETROSAT2LTR 12796 0.3823 (1008/2637) 1 Solo_LTR * Os_TE_696630 Chr11 23021463 23021462 + COPI2_LTR 4733 0.0208 (56/2687) 0 * * Os_TE_696625 Chr11 23019001 23019000 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * * Os_TE_696622 Chr11 23016474 23017791 + OSTE33 1012 0.2855 (851/2981) 1 Intact * Os_TE_696613 Chr11 23011912 23011911 + RETROSAT4_LTR 13504 0.0004 (1/2699) 0 * * Os_TE_696610 Chr11 23011226 23011227 - SZ-62LTR 3649 0.3382 (910/2691) 0 * * Os_TE_696608 Chr11 23011190 23011191 + SZ-62LTR 3649 0.0022 (6/2692) 0 * Os_TE_696607 Os_TE_696607 Chr11 23011186 23011185 - SZ-62LTR 3649 0.0034 (9/2670) 0 * Os_TE_696608 Os_TE_696603 Chr11 23010762 23015912 - ORSiTERTOOT00435 5151 0.8980 (2686/2991) 1 Intact * Os_TE_696601 Chr11 23010166 23010167 + WUWU 113 0.0007 (2/2994) 0 * * Os_TE_696599 Chr11 23009635 23009634 + SEVERIN-2 1952 0.0555 (166/2989) 0 * Os_TE_696598 Os_TE_696598 Chr11 23009634 23009635 - SEVERIN-2 1952 0.0543 (162/2982) 0 * Os_TE_696599 Os_TE_696595 Chr11 23008019 23007427 + RIRE1_LTR 8322 0.8980 (2686/2991) 1 Intact * Os_TE_696588 Chr11 23005575 23005576 - ORSgTETN00200001 10994 0.0248 (70/2821) 0 * Os_TE_696587 Os_TE_696587 Chr11 23005573 23005572 + SPMLIKE 10989 0.0224 (58/2588) 0 * Os_TE_696588 Os_TE_696578 Chr11 23001439 23001438 + OLO24 345 0.0010 (3/2983) 0 * * Os_TE_696576 Chr11 23001257 23001258 - COPIA1-LTR_OS 9292 0.5315 (1579/2971) 0 * * Os_TE_696573 Chr11 23001101 23001102 - RIREX_LTR 8828 0.0003 (1/2982) 0 * Os_TE_696572 Os_TE_696572 Chr11 23001097 23001096 + RIREX_LTR 8828 0.0003 (1/2979) 0 * Os_TE_696573 Os_TE_696571 Chr11 23001032 23001033 - RIRE2_LTR 11306 0.0024 (7/2973) 0 * Os_TE_696570 Os_TE_696570 Chr11 23001028 23001027 - ORSgTERT00201216 11284 0.0027 (8/2985) 0 * Os_TE_696571 Os_TE_696552 Chr11 22997562 22997802 + STOWAWAY51_OS 246 0.8944 (2651/2964) 1 Intact * Os_TE_696550 Chr11 22996876 22996875 + SPMLIKE 10989 0.0301 (85/2825) 0 * * Os_TE_696548 Chr11 22996457 22996458 + ORSgTEMT00500201 140 0.4822 (1302/2700) 0 * * Os_TE_696546 Chr11 22995666 22995667 - ORSgTETN00200001 10994 0.0080 (24/2991) 0 * Os_TE_696545 Os_TE_696545 Chr11 22995664 22995663 + SPMLIKE 10989 0.0080 (24/2992) 0 * Os_TE_696546 Os_TE_696541 Chr11 22993980 22993981 + ORSgTEMT01602671 234 0.0114 (34/2979) 0 * * Os_TE_696540 Chr11 22993683 22993684 - ORSiTERT00100062 5674 0.3831 (1142/2981) 0 * Os_TE_696539 Os_TE_696539 Chr11 22993679 22993678 + OSTONOR1_LTR 6440 0.3616 (1053/2912) 0 * Os_TE_696540 Os_TE_696538 Chr11 22993401 22993400 - ORSgTETN00200001 10994 0.0861 (257/2984) 0 * Os_TE_696537 Os_TE_696537 Chr11 22993398 22993399 + SPMLIKE 10989 0.0900 (269/2990) 0 * Os_TE_696538 Os_TE_696533 Chr11 22991610 22991611 + SZ-58LTR 114 0.3479 (1038/2984) 0 * Os_TE_696532 Os_TE_696532 Chr11 22991606 22991605 - SZ-58LTR 114 0.3482 (1039/2984) 0 * Os_TE_696533 Os_TE_696519 Chr11 22990309 22990308 - ORSgTETN00200001 10994 0.0030 (9/2990) 0 * * Os_TE_696515 Chr11 22989493 22989494 + SPMLIKE 10989 0.0044 (9/2049) 0 * * Os_TE_696512 Chr11 22989016 22989015 - TYPEM 227 0.0003 (1/2988) 0 * Os_TE_696511 Os_TE_696511 Chr11 22989015 22989016 - ORSgTEMT02400246 177 0.0005 (1/2036) 0 * Os_TE_696512 Os_TE_696509 Chr11 22988590 22988436 + SNAP-OL3 189 0.6693 (1975/2951) 1 Intact Os_TE_696507 Os_TE_696507 Chr11 22988434 22988589 + SNAP-OL3 189 0.6869 (1992/2900) 1 Intact Os_TE_696509 Os_TE_696504 Chr11 22987375 22987376 + ORSgTEMT00900402 248 0.2684 (793/2955) 0 * * Os_TE_696503 Chr11 22987299 22987300 - COWARD 200 0.0007 (2/2966) 0 * * Os_TE_696499 Chr11 22986272 22986273 + SPMLIKE 10989 0.0030 (6/2012) 0 * Os_TE_696498 Os_TE_696498 Chr11 22986270 22986269 - ORSgTETN00200001 10994 0.0025 (5/2005) 0 * Os_TE_696499 Os_TE_696496 Chr11 22985866 22985867 - NDNA1TNA_OS 334 0.0570 (105/1843) 0 * Os_TE_696495 Os_TE_696495 Chr11 22985864 22985863 + NDNA1TNA_OS 334 0.0517 (103/1991) 0 * Os_TE_696496 Os_TE_696483 Chr11 22984868 22985308 - RIRE2_LTR 11306 0.2466 (526/2133) 1 Solo_LTR * Os_TE_696482 Chr11 22983007 22983008 + COPIA2-LTR_OS 6433 0.0399 (101/2529) 0 * Os_TE_696481 Os_TE_696481 Chr11 22983003 22983002 - COPIA2-LTR_OS 6433 0.0495 (105/2120) 0 * Os_TE_696482 Os_TE_696479 Chr11 22982658 22982659 - ORSgTERT00201216 11284 0.0005 (1/1985) 0 * * Os_TE_696471 Chr11 22979451 22978964 + OSTE20 496 0.3354 (717/2138) 1 Intact Os_TE_696470 Os_TE_696470 Chr11 22978962 22979450 - OSTE20 496 0.3365 (719/2137) 1 Intact Os_TE_696471 Os_TE_696469 Chr11 22978875 22978874 + OSTE1 801 0.0009 (2/2136) 0 * * Os_TE_696441 Chr11 22959920 22959921 - CRM-LTR_OS 7749 0.0011 (3/2719) 0 * * Os_TE_696434 Chr11 22956647 22956648 + GYPSY-A_LTR 8951 0.0384 (110/2867) 0 * Os_TE_696433 Os_TE_696433 Chr11 22956643 22956642 - SZ-40LTR 2465 0.0383 (111/2900) 0 * Os_TE_696434 Os_TE_696432 Chr11 22956634 22956635 - RIRE2_LTR 11306 0.0134 (39/2903) 0 * Os_TE_696431 Os_TE_696431 Chr11 22956630 22956629 + RIRE2_LTR 11306 0.0129 (36/2794) 0 * Os_TE_696432 Os_TE_696412 Chr11 22946693 22946694 - RETRO2_LTR 12874 0.1076 (283/2629) -1 * Os_TE_696411 Os_TE_696411 Chr11 22946689 22946688 + RETRO2_LTR 12874 0.1508 (392/2599) 0 * Os_TE_696412 Os_TE_696407 Chr11 22945699 22945698 - MERMITE18B 1306 0.0051 (10/1967) 0 * * Os_TE_696388 Chr11 22940081 22940082 - OSLINE1_1 4159 0.0021 (5/2333) 0 * * Os_TE_696374 Chr11 22938296 22938297 - RIREX_LTR 8828 0.0027 (8/2957) 0 * * Os_TE_696373 Chr11 22938240 22938239 - ORSgTEMT01601834 234 0.0256 (75/2929) 0 * * Os_TE_696366 Chr11 22937240 22937241 + SEVERIN-2 1952 0.0099 (29/2943) 0 * * Os_TE_696359 Chr11 22935351 22935350 - ORSgTEMT01602413 239 0.0010 (3/2979) 0 * Os_TE_696358 Os_TE_696358 Chr11 22935348 22935349 - ORSgTEMT01602413 239 0.0010 (3/2970) 0 * Os_TE_696359 Os_TE_696340 Chr11 22932695 22932696 + RETRO2_LTR 12874 0.0228 (68/2982) 0 * Os_TE_696339 Os_TE_696339 Chr11 22932691 22932690 - RETRO2_LTR 12874 0.0205 (61/2981) 0 * Os_TE_696340 Os_TE_696338 Chr11 22932566 22932567 - INDITTO 263 0.0296 (88/2969) 0 * Os_TE_696337 Os_TE_696337 Chr11 22932564 22932563 + ORSgTETNOOT02316 263 0.0302 (90/2976) 0 * Os_TE_696338 Os_TE_696336 Chr11 22932472 22932471 - ORSgTEMT00501356 145 0.0010 (3/2968) 0 * * Os_TE_696332 Chr11 22930847 22930848 + GYPSY-A_LTR 8951 0.0102 (30/2945) 0 * Os_TE_696331 Os_TE_696331 Chr11 22930843 22930842 - GYPSY-A_LTR 8951 0.0102 (30/2953) 0 * Os_TE_696332 Os_TE_696326 Chr11 22930179 22930180 - RETRO2_LTR 12874 0.0139 (38/2743) 0 * Os_TE_696325 Os_TE_696325 Chr11 22930175 22930174 + RETRO2_LTR 12874 0.0136 (37/2729) 0 * Os_TE_696326 Os_TE_696324 Chr11 22929420 22929421 - NDNA1TNA_OS 334 0.0027 (8/2928) 0 * Os_TE_696323 Os_TE_696323 Chr11 22929418 22929417 + NDNA1TNA_OS 334 0.0024 (7/2927) 0 * Os_TE_696324 Os_TE_696322 Chr11 22929383 22929384 + CACTA-M 1129 0.0014 (4/2939) 0 * Os_TE_696321 Os_TE_696321 Chr11 22929381 22929380 - ORSgTETN00200001 10994 0.0017 (5/2930) 0 * Os_TE_696322 Os_TE_696317 Chr11 22925541 22925542 + AMYLTP 383 0.0210 (62/2958) 0 * Os_TE_696316 Os_TE_696316 Chr11 22925533 22925532 - AMYLTP 383 0.0223 (66/2961) 0 * Os_TE_696317 Os_TE_696307 Chr11 22924801 22924802 + OLO24 345 0.0003 (1/2984) 0 * * Os_TE_696305 Chr11 22924667 22924668 - RIREX_LTR 8828 0.0060 (18/2995) 0 * Os_TE_696304 Os_TE_696304 Chr11 22924663 22924662 + RIREX_LTR 8828 0.0053 (16/2994) 0 * Os_TE_696305 Os_TE_696303 Chr11 22924451 22924452 - OLO24 345 0.0003 (1/2995) 0 * Os_TE_696302 Os_TE_696302 Chr11 22924449 22924448 + OLO24 345 0.0003 (1/2995) 0 * Os_TE_696303 Os_TE_696297 Chr11 22923631 22923632 + ORSiTERT00200145 12238 0.1127 (330/2929) 0 * * Os_TE_696293 Chr11 22922293 22922292 + MuDR4_OS 7610 0.1157 (339/2931) 0 * * Os_TE_696285 Chr11 22920993 22920992 + CACTA-H 1152 0.0948 (283/2985) 0 * * Os_TE_696278 Chr11 22920687 22920686 + SPMLIKE 10989 0.0545 (159/2915) 0 * * Os_TE_696271 Chr11 22917839 22917840 + RIRE2_LTR 11306 0.0037 (10/2723) 0 * Os_TE_696270 Os_TE_696270 Chr11 22917835 22917834 - RIRE2_LTR 11306 0.0034 (10/2959) 0 * Os_TE_696271 Os_TE_696265 Chr11 22916839 22916840 + AMYLTP 383 0.0347 (103/2972) 0 * * Os_TE_696258 Chr11 22914368 22914367 + TNR12 528 0.0071 (21/2959) 0 * * Os_TE_696253 Chr11 22910285 22910286 + F1275 157 0.0003 (1/2975) 0 * * Os_TE_696231 Chr11 22899961 22899962 + ORSgTEMT00600376 329 0.0856 (248/2898) 0 * Os_TE_696230 Os_TE_696230 Chr11 22899956 22899955 + ORSgTEMT00600272 361 0.0888 (258/2904) 0 * Os_TE_696231 Os_TE_696228 Chr11 22899424 22899425 + RIREX_LTR 8828 0.0007 (2/2944) 0 * Os_TE_696227 Os_TE_696227 Chr11 22899420 22899419 - RIREX_LTR 8828 0.0007 (2/2952) 0 * Os_TE_696228 Os_TE_696223 Chr11 22898987 22898986 - ORSgTEMT01701266 154 0.2151 (586/2724) 0 * * Os_TE_696218 Chr11 22897506 22897505 + ORSgTEMT00900319 250 0.0010 (3/2958) 0 * * Os_TE_696216 Chr11 22897452 22897453 + YOUREN 286 0.0099 (29/2936) 0 * * Os_TE_696214 Chr11 22897158 22897396 - STOWAWAY51_OS 246 0.0704 (211/2997) 1 Intact * Os_TE_696199 Chr11 22893669 22893670 + ORSiTERTOOT00296 5553 0.0020 (6/2933) 0 * Os_TE_696198 Os_TE_696198 Chr11 22893665 22893664 - SC-3_LTR 5748 0.0017 (5/2946) 0 * Os_TE_696199 Os_TE_696197 Chr11 22893298 22893299 + COPIA2-LTR_OS 6433 0.0003 (1/2984) 0 * * Os_TE_696196 Chr11 22892714 22892715 - STOWAWAY14_OS 258 0.0003 (1/2992) 0 * * Os_TE_696194 Chr11 22890714 22890715 - SC-3_LTR 5748 0.0003 (1/2981) 0 * Os_TE_696193 Os_TE_696193 Chr11 22890710 22890709 + ORSiTERTOOT00296 5553 0.0003 (1/2987) 0 * Os_TE_696194 Os_TE_696191 Chr11 22888075 22888076 - RIREX_LTR 8828 0.0013 (4/2996) 0 * Os_TE_696190 Os_TE_696190 Chr11 22888071 22888070 + RIREX_LTR 8828 0.0013 (4/2998) 0 * Os_TE_696191 Os_TE_696186 Chr11 22886303 22885216 - JOUZHEN 596 0.2751 (819/2977) 1 Intact Os_TE_696185 Os_TE_696185 Chr11 22885216 22886303 + JOUZHEN 596 0.2786 (831/2983) 1 Intact Os_TE_696186 Os_TE_696184 Chr11 22884938 22884937 - ORSgTEMT01601208 238 0.0007 (2/2980) 0 * Os_TE_696183 Os_TE_696183 Chr11 22884935 22884936 + ORSgTEMT01601488 239 0.0010 (3/2871) 0 * Os_TE_696184 Os_TE_696180 Chr11 22881489 22881488 + ORSgTEMT01601122 212 0.1709 (505/2955) 0 * Os_TE_696179 Os_TE_696179 Chr11 22881486 22881487 + ORSgTEMT01601122 212 0.1650 (486/2946) 0 * Os_TE_696180 Os_TE_696176 Chr11 22879762 22879763 - ORSiTERTOOT00333 4719 0.0031 (9/2901) 0 * Os_TE_696175 Os_TE_696175 Chr11 22879759 22879758 + ORSiTERTOOT00333 4719 0.0031 (9/2905) 0 * Os_TE_696176 Os_TE_696119 Chr11 22849125 22850235 + ORSgTETN00200005 1121 0.2079 (335/1611) 1 Intact * Os_TE_696103 Chr11 22841782 22841643 - ORSgTEMT01702186 155 0.8970 (1959/2184) 1 Intact * Os_TE_696063 Chr11 22814307 22814306 - ORSgTERT00201216 11284 0.0317 (38/1197) 0 * * Os_TE_696000 Chr11 22772598 22772597 - TRUNCATOR 2918 0.0836 (103/1232) 0 * * Os_TE_695997 Chr11 22768486 22768487 + ORSgTEMT01602051 240 0.1424 (238/1671) 0 * * Os_TE_695993 Chr11 22763555 22763554 + STOWAWAY50_OS 174 0.1683 (482/2864) 0 * * Os_TE_695992 Chr11 22763552 22763553 - ORSgTEMT01701882 154 0.4633 (417/900) 0 * Os_TE_695991 Os_TE_695991 Chr11 22763548 22763547 + ORSgTEMT01701265 147 0.1619 (478/2953) 0 * Os_TE_695992 Os_TE_695990 Chr11 22763510 22763509 - ORSgTETNOOT02245 144 0.0026 (7/2688) 0 * * Os_TE_695981 Chr11 22762491 22762119 + ORSgTEMT04800085 366 0.1753 (471/2687) 1 Intact Os_TE_695979 Os_TE_695979 Chr11 22762119 22762490 - ORSgTEMT04800063 360 0.6013 (469/780) 1 Intact Os_TE_695981 Os_TE_695978 Chr11 22762054 22762053 - ORSgTEMT00901723 248 0.3787 (295/779) 0 * * Os_TE_695972 Chr11 22760571 22760572 - SZ-40LTR 2465 0.6492 (1386/2135) 0 * * Os_TE_695970 Chr11 22757926 22754371 - ORSiTETNOOT00200 3563 0.0423 (106/2505) 1 Intact Os_TE_695969 Os_TE_695969 Chr11 22754371 22757925 + TWIFBIG 3567 0.0580 (115/1982) 1 Intact Os_TE_695970 Os_TE_695967 Chr11 22754088 22754089 + OSTE15 1168 0.0020 (5/2505) 0 * * Os_TE_695965 Chr11 22753179 22753956 + CACTA-D 1038 0.1886 (471/2497) 1 Intact * Os_TE_695941 Chr11 22738734 22738735 - RIRE2_LTR 11306 0.0032 (3/935) 0 * Os_TE_695940 Os_TE_695940 Chr11 22738730 22738729 + RIRE2_LTR 11306 0.0031 (3/953) 0 * Os_TE_695941 Os_TE_695939 Chr11 22738180 22738181 + STOWAWAY44_OS 240 0.0705 (68/965) 0 * * Os_TE_695937 Chr11 22737970 22737971 + ORSiTERT00200145 12238 0.0287 (19/662) 0 * * Os_TE_695921 Chr11 22735677 22735678 - Cassandra_OS-LTR 764 0.1895 (184/971) 0 * * Os_TE_695919 Chr11 22734698 22734699 + GAIJIN 147 0.0007 (2/2672) 0 * * Os_TE_695911 Chr11 22733070 22733071 + ORSiTERTOOT00074 4935 0.7243 (1952/2695) 0 * * Os_TE_695895 Chr11 22728946 22728945 + EnSpm-13_OS 11171 0.0087 (24/2750) 0 * * Os_TE_695882 Chr11 22711580 22711581 - SC-3_LTR 5748 0.0003 (1/2875) 0 * Os_TE_695881 Os_TE_695881 Chr11 22711576 22711575 + ORSiTERTOOT00296 5553 0.0004 (1/2789) 0 * Os_TE_695882 Os_TE_695873 Chr11 22704666 22704665 + SEVERIN-2 1952 0.0067 (1/149) 0 * * Os_TE_695868 Chr11 22697618 22697619 + TWIFBIG 3567 0.0019 (5/2573) 0 * * Os_TE_695867 Chr11 22697596 22697597 + TWIF 586 0.0004 (1/2362) -1 * * Os_TE_695865 Chr11 22697518 22693875 + TWIF 586 0.0250 (68/2724) 1 Intact Os_TE_695864 Os_TE_695864 Chr11 22693870 22697518 - ORSiTETNOOT00169 3649 0.0423 (105/2485) -1 Intact Os_TE_695865 Os_TE_695858 Chr11 22692759 22692760 + NDNA1TNA_OS 334 0.2427 (141/581) 0 * Os_TE_695857 Os_TE_695857 Chr11 22692757 22692756 - NDNA1TNA_OS 334 0.2470 (144/583) 0 * Os_TE_695858 Os_TE_695844 Chr11 22689852 22689853 + RETROSAT2LTR 12796 0.0257 (71/2765) 0 * * Os_TE_695841 Chr11 22689588 22689589 + ORSgTEMT00501629 149 0.8389 (2452/2923) 0 * * Os_TE_695840 Chr11 22689513 22667810 - ORSgTEMT00901138 254 0.1803 (515/2857) 1 Intact * Os_TE_695820 Chr11 22667801 22667802 + ORSgTEMT01601591 242 0.0471 (141/2991) 0 * * Os_TE_695815 Chr11 22667085 22667287 + ORSgTEMT01601122 212 0.2004 (563/2809) 1 Intact * Os_TE_695814 Chr11 22666960 22666961 - RIRE2_LTR 11306 0.0777 (230/2961) 0 * Os_TE_695813 Os_TE_695813 Chr11 22666956 22666955 - ORSgTERT00201216 11284 0.0756 (225/2977) 0 * Os_TE_695814 Os_TE_695812 Chr11 22666882 22666883 + ORSgTEMT00600272 361 0.0007 (2/2993) 0 * Os_TE_695811 Os_TE_695811 Chr11 22666877 22666876 + ORSgTEMT00600376 329 0.0007 (2/2992) 0 * Os_TE_695812 Os_TE_695806 Chr11 22665687 22665688 - NDNA1TNA_OS 334 0.0010 (3/2996) 0 * Os_TE_695805 Os_TE_695805 Chr11 22665685 22665684 + NDNA1TNA_OS 334 0.0010 (3/2906) 0 * Os_TE_695806 Os_TE_695804 Chr11 22665534 22665535 + OSTE33 1012 0.0020 (6/2992) 0 * Os_TE_695803 Os_TE_695803 Chr11 22665525 22665524 + OSTE33 1012 0.0020 (6/2993) 0 * Os_TE_695804 Os_TE_695801 Chr11 22665310 22665311 + NDNA1TNA_OS 334 0.0170 (51/2997) 0 * Os_TE_695800 Os_TE_695800 Chr11 22665309 22665308 - NDNA1TNA_OS 334 0.0173 (52/2998) 0 * Os_TE_695801 Os_TE_695797 Chr11 22664176 22664177 - MPING 430 0.0003 (1/2936) 0 * Os_TE_695796 Os_TE_695796 Chr11 22664174 22664173 + MPING 430 0.0004 (1/2570) 0 * Os_TE_695797 Os_TE_695794 Chr11 22663821 22663822 + CASTAWAY-3 314 0.0104 (24/2301) 0 * * Os_TE_695787 Chr11 22663343 22663344 - COPIA2-LTR_OS 6433 0.0004 (1/2838) 0 * Os_TE_695786 Os_TE_695786 Chr11 22663339 22663338 + COPIA2-LTR_OS 6433 0.0003 (1/2900) 0 * Os_TE_695787 Os_TE_695781 Chr11 22662934 22662935 + ORSgTEMT04600010 284 0.2394 (714/2983) 0 * Os_TE_695780 Os_TE_695780 Chr11 22662932 22662931 + ID-4 284 0.2354 (692/2940) 0 * Os_TE_695781 Os_TE_695779 Chr11 22662871 22662872 - ORSgTETNOOT00754 253 0.0285 (85/2980) 0 * Os_TE_695778 Os_TE_695778 Chr11 22662867 22662866 + ORSgTETNOOT01686 252 0.0282 (84/2979) 0 * Os_TE_695779 Os_TE_695777 Chr11 22662175 22662174 + NDNA1TNA_OS 334 0.4212 (1251/2970) 0 * Os_TE_695776 Os_TE_695776 Chr11 22662174 22662175 - ORSgTEMT00100799 337 0.4290 (1284/2993) 0 * Os_TE_695777 Os_TE_695774 Chr11 22661726 22661725 + RIREX_LTR 8828 0.0013 (4/2999) 0 * * Os_TE_695773 Chr11 22661305 22661306 + ORSiTEMT00300001 383 0.4419 (1288/2915) 0 * Os_TE_695772 Os_TE_695772 Chr11 22661303 22661302 - ORSgTEMT00300160 419 0.4595 (1377/2997) 0 * Os_TE_695773 Os_TE_695762 Chr11 22656864 22656865 + RIREX_LTR 8828 0.0023 (7/2994) 0 * Os_TE_695761 Os_TE_695761 Chr11 22656860 22656859 - RIREX_LTR 8828 0.0023 (7/2994) 0 * Os_TE_695762 Os_TE_695760 Chr11 22656820 22656821 - ORSgTETNOOT00477 252 0.0048 (14/2892) 0 * Os_TE_695759 Os_TE_695759 Chr11 22656815 22656814 + ORSgTETNOOT01531 255 0.0047 (14/2994) 0 * Os_TE_695760 Os_TE_695757 Chr11 22656763 22656764 - ORSgTETNOOT00754 253 0.6589 (1706/2589) 0 * Os_TE_695756 Os_TE_695756 Chr11 22656758 22656757 - ORSgTETNOOT00477 252 0.6619 (1715/2591) 0 * Os_TE_695757 Os_TE_695753 Chr11 22656590 22656591 + ORSgTEMT00501356 145 0.0080 (24/2982) 0 * * Os_TE_695740 Chr11 22650527 22650526 - ORSgTEMT01700299 212 0.1037 (307/2961) 0 * Os_TE_695739 Os_TE_695739 Chr11 22650524 22650525 + ORSgTEMT01701104 154 0.1036 (306/2955) 0 * Os_TE_695740 Os_TE_695734 Chr11 22648744 22648743 - STOWAWAY46_OS 154 0.0505 (148/2930) 0 * * Os_TE_695730 Chr11 22647148 22647147 - RIRE2_LTR 11306 0.1803 (389/2158) 0 * * Os_TE_695725 Chr11 22641865 22641866 - ORSgTEMT02000041 194 0.0236 (70/2962) 0 * * Os_TE_695724 Chr11 22641529 22641530 + ORSiTEMT00300001 383 0.0187 (47/2514) 0 * * Os_TE_695723 Chr11 22641241 22641242 + MERMITE18B 1306 0.2622 (686/2616) 0 * Os_TE_695722 Os_TE_695722 Chr11 22641233 22641232 + MERMITEB 1610 0.3646 (1042/2858) 0 * Os_TE_695723 Os_TE_695721 Chr11 22641218 22641219 + MERMITEA 1710 0.3653 (1088/2978) 0 * Os_TE_695720 Os_TE_695720 Chr11 22641210 22641209 + MERMITEA 1710 0.2631 (675/2566) 0 * Os_TE_695721 Os_TE_695719 Chr11 22638600 22638601 + F524 291 0.0018 (5/2841) 0 * * Os_TE_695716 Chr11 22637930 22637931 + STOWAWAY1_OS 149 0.2356 (627/2661) 0 * * Os_TE_695708 Chr11 22628704 22628705 + ORSgTEMT00500201 140 0.1234 (359/2910) 0 * * Os_TE_695706 Chr11 22628603 22628602 + ORSgTETN00200005 1121 0.2557 (765/2992) 0 * Os_TE_695705 Os_TE_695705 Chr11 22628599 22628600 + CACTA-M 1129 0.2539 (759/2989) 0 * Os_TE_695706 Os_TE_695704 Chr11 22628309 22628310 + RIREX_LTR 8828 0.0059 (16/2729) 0 * Os_TE_695703 Os_TE_695703 Chr11 22628305 22628304 - RIREX_LTR 8828 0.0059 (14/2370) 0 * Os_TE_695704 Os_TE_695684 Chr11 22617469 22617155 - MDM2 312 0.3525 (712/2020) 1 Intact Os_TE_695683 Os_TE_695683 Chr11 22617155 22617469 + MDM2 312 0.2863 (525/1834) 1 Intact Os_TE_695684 Os_TE_695682 Chr11 22616897 22616898 + TWIFBIG 3567 0.0714 (148/2074) 0 * Os_TE_695681 Os_TE_695681 Chr11 22616890 22616889 - ORSiTETNOOT00200 3563 0.0618 (127/2054) 0 * Os_TE_695682 Os_TE_695677 Chr11 22614045 22614046 + F804 170 0.7425 (2122/2858) 0 * * Os_TE_695676 Chr11 22613848 22613849 - RETROSAT2LTR 12796 0.0067 (20/2981) 0 * * Os_TE_695675 Chr11 22611652 22611653 - SC-10_LTR 4920 0.0064 (18/2803) 0 * * Os_TE_695671 Chr11 22610868 22610867 + TYPEU4 402 0.0029 (8/2784) 0 * * Os_TE_695670 Chr11 22609890 22609889 + CACTA-B 1103 0.0519 (144/2773) 0 * * Os_TE_695668 Chr11 22608852 22608618 - ORSgTEMT01400014 209 0.6930 (1598/2306) 1 Intact * Os_TE_695664 Chr11 22608527 22608526 + CACTA-B 1103 0.0502 (139/2769) 0 * * Os_TE_695659 Chr11 22606565 22606566 + STOWAWAY11_OS 292 0.0029 (8/2800) 0 * * Os_TE_695657 Chr11 22605877 22605878 - COPI2_LTR 4733 0.0086 (24/2805) 0 * * Os_TE_695652 Chr11 22604001 22604000 + STOWAWAY51_OS 246 0.8566 (2359/2754) 0 * * Os_TE_695651 Chr11 22602136 22602135 - ORSgTEMT01601432 239 0.0179 (8/446) 0 * Os_TE_695650 Os_TE_695650 Chr11 22602133 22602134 - ORSgTEMT01602539 240 0.0027 (8/2989) 0 * Os_TE_695651 Os_TE_695627 Chr11 22595744 22583145 + RETROSAT2LTR 12796 0.0614 (179/2916) 1 Intact Os_TE_695621 Os_TE_695621 Chr11 22583143 22595744 - RETROSAT2LTR 12796 0.0665 (190/2856) 1 Intact Os_TE_695627 Os_TE_695620 Chr11 22582819 22582820 + DS-RICE2N 613 0.0021 (6/2915) 0 * Os_TE_695619 Os_TE_695619 Chr11 22582812 22582811 - DS-RICE2N 613 0.0020 (6/2928) 0 * Os_TE_695620 Os_TE_695618 Chr11 22582305 22582306 - RETROSAT2LTRA 3112 0.3419 (998/2919) 0 * Os_TE_695617 Os_TE_695617 Chr11 22582301 22582300 + RETROSAT2LTRA 3112 0.3381 (985/2913) 0 * Os_TE_695618 Os_TE_695613 Chr11 22580360 22580361 - JOUZHENA 607 0.5099 (1489/2920) 0 * Os_TE_695612 Os_TE_695612 Chr11 22580353 22580352 + JOUZHENA 607 0.5294 (1539/2907) 0 * Os_TE_695613 Os_TE_695609 Chr11 22580193 22580194 - ENSPM4_OS 11610 0.0220 (64/2907) 0 * * Os_TE_695604 Chr11 22579687 22579686 + ORSgTETN00200005 1121 0.0244 (58/2376) 0 * Os_TE_695603 Os_TE_695603 Chr11 22579686 22579687 + CACTA-H 1152 0.0196 (56/2857) 0 * Os_TE_695604 Os_TE_695602 Chr11 22577834 22577835 - MuDR3_OS 8604 0.0027 (8/2982) 0 * Os_TE_695601 Os_TE_695601 Chr11 22577826 22577825 - MuDR3_OS 8604 0.0030 (9/2983) 0 * Os_TE_695602 Os_TE_695582 Chr11 22571674 22571675 - ORSgTEMT01702216 170 0.0019 (3/1552) 0 * * Os_TE_695581 Chr11 22571650 22571502 - ORSgTEMT01702216 170 0.7406 (1493/2016) 1 Intact * Os_TE_695573 Chr11 22570010 22570011 + COPI2_LTR 4733 0.0003 (1/2997) 0 * Os_TE_695572 Os_TE_695572 Chr11 22570006 22570005 - COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_695573 Os_TE_695558 Chr11 22564401 22564400 - ORSgTEMT01602467 227 0.0013 (4/2988) 0 * Os_TE_695557 Os_TE_695557 Chr11 22564400 22564401 + ORSgTEMT01602051 240 0.0020 (6/2988) 0 * Os_TE_695558 Os_TE_695556 Chr11 22564372 22564373 + SC-8_LTR 4951 0.0003 (1/2987) 0 * Os_TE_695555 Os_TE_695555 Chr11 22564368 22564367 - SC-8_LTR 4951 0.0003 (1/2989) 0 * Os_TE_695556 Os_TE_695554 Chr11 22562766 22562765 + OsSN3 183 0.0017 (5/2993) 0 * * Os_TE_695553 Chr11 22561804 22561805 - F569 228 0.0362 (108/2984) 0 * Os_TE_695552 Os_TE_695552 Chr11 22561802 22561801 + F569 228 0.0372 (111/2987) 0 * Os_TE_695553 Os_TE_695547 Chr11 22557873 22557874 + ORSiTERTOOT00296 5553 0.0284 (85/2995) 0 * * Os_TE_695535 Chr11 22552486 22552485 - SC-7_LTR 4431 0.0003 (1/2996) 0 * Os_TE_695534 Os_TE_695534 Chr11 22552485 22552486 + SC-7_LTR 4431 0.0003 (1/2996) 0 * Os_TE_695535 Os_TE_695532 Chr11 22551463 22551464 - COPI2_LTR 4733 0.0003 (1/2986) 0 * * Os_TE_695529 Chr11 22550120 22550121 - OLO24 345 0.0010 (3/2982) 0 * Os_TE_695528 Os_TE_695528 Chr11 22550118 22550117 + OLO24 345 0.0011 (3/2777) 0 * Os_TE_695529 Os_TE_695515 Chr11 22547355 22547356 + HELITRON8_OS 8831 0.0003 (1/2962) 0 * * Os_TE_695514 Chr11 22545509 22545147 - MDM1 326 0.8831 (2590/2933) 1 Intact * Os_TE_695508 Chr11 22544517 22544516 - ORSgTEMT01400023 211 0.0726 (215/2961) 0 * Os_TE_695507 Os_TE_695507 Chr11 22544511 22544512 - ORSgTEMT01400019 216 0.0690 (202/2929) 0 * Os_TE_695508 Os_TE_695502 Chr11 22544132 22544467 + ORSgTEMT00101121 331 0.8842 (2626/2970) 1 Intact * Os_TE_695499 Chr11 22543745 22543895 + ORSgTEMT00501960 150 0.8353 (2439/2920) 1 Intact * Os_TE_695497 Chr11 22543261 22543369 - UNIQUE 158 0.8772 (2437/2778) 1 Intact * Os_TE_695491 Chr11 22541980 22541981 + RETRO2A_LTR 12895 0.0008 (2/2491) 0 * Os_TE_695490 Os_TE_695490 Chr11 22541976 22541975 - RETRO1_LTR 8314 0.0010 (3/2859) 0 * Os_TE_695491 Os_TE_695489 Chr11 22541951 22541465 + TEOS1 476 0.8648 (2265/2619) 1 Intact Os_TE_695486 Os_TE_695486 Chr11 22541464 22541951 - TEOS1 476 0.8058 (2353/2920) 1 Intact Os_TE_695489 Os_TE_695483 Chr11 22540908 22540756 + ORSgTEMT01701591 154 0.8126 (2419/2977) 1 Intact Os_TE_695481 Os_TE_695481 Chr11 22540754 22540908 + ORSgTEMT01702045 137 0.8147 (2427/2979) 1 Intact Os_TE_695483 Os_TE_695480 Chr11 22540579 22540578 - ORSgTEMT01601696 238 0.0749 (223/2978) 0 * Os_TE_695479 Os_TE_695479 Chr11 22540576 22540577 + ORSgTEMT01602606 192 0.0766 (228/2976) 0 * Os_TE_695480 Os_TE_695474 Chr11 22537796 22537557 - ORSgTETNOOT02565 240 0.8106 (2423/2989) 1 Intact Os_TE_695473 Os_TE_695473 Chr11 22537557 22537797 + ORSgTETNOOT01642 241 0.8137 (2432/2989) 1 Intact Os_TE_695474 Os_TE_695466 Chr11 22532365 22532364 - ORSgTEMT01701254 154 0.0010 (3/2985) 0 * Os_TE_695465 Os_TE_695465 Chr11 22532362 22532363 + ORSgTEMT01701104 154 0.0010 (3/2979) 0 * Os_TE_695466 Os_TE_695459 Chr11 22531307 22531308 - RIRE2_LTR 11306 0.0442 (131/2965) 0 * Os_TE_695458 Os_TE_695458 Chr11 22531303 22531302 - ORSgTERT00201216 11284 0.0464 (138/2971) 0 * Os_TE_695459 Os_TE_695454 Chr11 22530852 22531197 + NDNA2TNA_OS 346 0.2702 (619/2291) 1 Intact * Os_TE_695437 Chr11 22524296 22524297 + NDNA1TNA_OS 334 0.0007 (2/2999) 0 * Os_TE_695436 Os_TE_695436 Chr11 22524294 22524293 - NDNA1TNA_OS 334 0.0003 (1/2999) 0 * Os_TE_695437 Os_TE_695435 Chr11 22523540 22523541 + NDNA1TNA_OS 334 0.0050 (15/2998) 0 * Os_TE_695434 Os_TE_695434 Chr11 22523538 22523537 - NDNA1TNA_OS 334 0.0050 (15/2998) 0 * Os_TE_695435 Os_TE_695426 Chr11 22521689 22521690 + SEVERIN-2 1952 0.0020 (6/2958) 0 * * Os_TE_695425 Chr11 22521405 22520199 - COPIA2-LTR_OS 6433 0.7582 (2254/2973) 1 Intact Os_TE_695420 Os_TE_695420 Chr11 22520199 22521399 + COPIA2-LTR_OS 6433 0.7548 (2238/2965) 1 Intact Os_TE_695425 Os_TE_695417 Chr11 22519578 22519577 - ORSgTEMT01602074 239 0.0939 (281/2991) 0 * * Os_TE_695416 Chr11 22519575 22519576 - ORSgTEMT01600742 234 0.0809 (239/2953) 0 * Os_TE_695415 Os_TE_695415 Chr11 22519568 22519567 - ORSgTEMT01600953 233 0.0935 (279/2984) 0 * Os_TE_695416 Os_TE_695410 Chr11 22513445 22513444 + OSTE33 1012 0.0017 (5/2979) 0 * * Os_TE_695407 Chr11 22510588 22510587 - ATLANTYS-LTR_OS 13740 0.0003 (1/2961) 0 * * Os_TE_695390 Chr11 22507404 22507403 - NDNA1TNA_OS 334 0.0047 (14/2977) 0 * * Os_TE_695388 Chr11 22506898 22506899 + ORSgTETNOOT00908 242 0.4742 (1398/2948) 0 * Os_TE_695387 Os_TE_695387 Chr11 22506896 22506895 - ORSiTEMT01000002 221 0.4785 (1421/2970) 0 * Os_TE_695388 Os_TE_695376 Chr11 22504991 22504992 + OLO24 345 0.0046 (13/2848) 0 * Os_TE_695375 Os_TE_695375 Chr11 22504984 22504983 - TYPEM 227 0.0045 (13/2858) 0 * Os_TE_695376 Os_TE_695367 Chr11 22503322 22503323 + RIRE2_LTR 11306 0.0013 (4/2973) 0 * Os_TE_695366 Os_TE_695366 Chr11 22503318 22503317 - RIRE2_LTR 11306 0.0016 (4/2553) 0 * Os_TE_695367 Os_TE_695360 Chr11 22501691 22501690 - ORSgTEMT02400179 221 0.0996 (294/2952) 0 * Os_TE_695359 Os_TE_695359 Chr11 22501686 22501687 - TYPEM 227 0.0986 (291/2950) 0 * Os_TE_695360 Os_TE_695355 Chr11 22500745 22500744 - TREP215 239 0.0016 (4/2432) 0 * * Os_TE_695352 Chr11 22500551 22500552 + SEVERIN-2 1952 0.0010 (3/2985) 0 * * Os_TE_695345 Chr11 22499475 22499476 - Cassandra_OS-LTR 764 0.0323 (95/2945) 0 * * Os_TE_695343 Chr11 22498323 22498322 - ID-3 289 0.0886 (260/2936) 0 * * Os_TE_695341 Chr11 22497698 22497699 - RETROSAT5_LTR 13878 0.0026 (7/2738) 0 * Os_TE_695340 Os_TE_695340 Chr11 22497694 22497693 + ORSiTERT00200145 12238 0.0022 (6/2744) 0 * Os_TE_695341 Os_TE_695328 Chr11 22495029 22495028 + SEVERIN-2 1952 0.0663 (197/2972) 0 * * Os_TE_695324 Chr11 22491404 22491403 - RIRE2_LTR 11306 0.0354 (72/2034) 0 * * Os_TE_695301 Chr11 22486870 22486871 + RETROSAT4_LTR 13504 0.2771 (812/2930) 0 * Os_TE_695300 Os_TE_695300 Chr11 22486866 22486865 - RETROSAT4_LTR 13504 0.2902 (862/2970) 0 * Os_TE_695301 Os_TE_695299 Chr11 22486695 22486694 - TRUNCATOR 2918 0.0125 (37/2958) 0 * Os_TE_695298 Os_TE_695298 Chr11 22486694 22486695 + TRUNCATOR 2918 0.0182 (54/2966) 0 * Os_TE_695299 Os_TE_695281 Chr11 22482079 22482080 - HARB-1_OS 5166 0.0054 (16/2986) 0 * Os_TE_695280 Os_TE_695280 Chr11 22482077 22482076 + HARB-1_OS 5166 0.0054 (16/2980) 0 * Os_TE_695281 Os_TE_695268 Chr11 22477679 22477678 - ORSgTEMT01601432 239 0.0194 (58/2996) 0 * Os_TE_695267 Os_TE_695267 Chr11 22477676 22477677 + ORSgTEMT01602181 239 0.0197 (59/2993) 0 * Os_TE_695268 Os_TE_695265 Chr11 22476728 22476727 + RETROSAT4_LTR 13504 0.0271 (81/2984) 0 * * Os_TE_695262 Chr11 22475263 22475264 + ORSgTETNOOT00908 242 0.0003 (1/2885) 0 * Os_TE_695261 Os_TE_695261 Chr11 22475256 22475255 + ORSgTETNOOT01219 231 0.0003 (1/2895) 0 * Os_TE_695262 Os_TE_695259 Chr11 22474086 22474085 + RETRO2_LTR 12874 0.0028 (7/2458) 0 * * Os_TE_695258 Chr11 22474038 22474037 - CLOUD-6 508 0.0032 (8/2519) 0 * * Os_TE_695257 Chr11 22473554 22473555 - MuDR4_OS 7610 0.0210 (51/2432) 0 * Os_TE_695256 Os_TE_695256 Chr11 22473546 22473545 - MuDR4_OS 7610 0.0219 (54/2471) 0 * Os_TE_695257 Os_TE_695240 Chr11 22471492 22471493 - MuDR2_OS 6770 0.0029 (5/1752) -1 * * Os_TE_695238 Chr11 22469546 22469545 + ORSgTEMT00900266 245 0.0004 (1/2603) 0 * * Os_TE_695234 Chr11 22468197 22468198 - MuDR2_OS 6770 0.0146 (43/2953) 0 * Os_TE_695233 Os_TE_695233 Chr11 22468188 22468187 + MuDR2_OS 6770 0.0132 (39/2954) 0 * Os_TE_695234 Os_TE_695227 Chr11 22466873 22466874 - OSCOPIA1_LTR 4754 0.3280 (931/2838) 0 * Os_TE_695226 Os_TE_695226 Chr11 22466869 22466868 + OSCOPIA1_LTR 4754 0.3211 (948/2952) 0 * Os_TE_695227 Os_TE_695212 Chr11 22466240 22466241 - ORSgTETN00200001 10994 0.0213 (63/2951) 0 * Os_TE_695211 Os_TE_695211 Chr11 22466238 22466237 + SPMLIKE 10989 0.0222 (65/2929) 0 * Os_TE_695212 Os_TE_695205 Chr11 22465460 22465461 - TRUNCATOR2_LTR 2904 0.0007 (2/2859) 0 * Os_TE_695204 Os_TE_695204 Chr11 22465456 22465455 + ORSiTERTOOT00028 8600 0.0003 (1/2888) 0 * Os_TE_695205 Os_TE_695166 Chr11 22449927 22449928 - COPI2_LTR 4733 0.0003 (1/2985) 0 * * Os_TE_695163 Chr11 22449234 22449233 + RIREX_LTR 8828 0.0863 (243/2816) 0 * * Os_TE_695153 Chr11 22444634 22444635 - EnSpm-11_OS 13126 0.0047 (14/2997) 0 * Os_TE_695152 Os_TE_695152 Chr11 22444632 22444631 + EnSpm-11_OS 13126 0.0047 (14/2997) 0 * Os_TE_695153 Os_TE_695147 Chr11 22442229 22442230 - TRUNCATOR 2918 0.0017 (5/2988) 0 * * Os_TE_695143 Chr11 22441187 22441188 - TRUNCATOR2_LTR 2904 0.0007 (2/2989) 0 * Os_TE_695142 Os_TE_695142 Chr11 22441183 22441182 + ORSiTERTOOT00028 8600 0.0007 (2/2991) 0 * Os_TE_695143 Os_TE_695141 Chr11 22440431 22440432 - RETRO2_LTR 12874 0.5194 (1551/2986) 0 * Os_TE_695140 Os_TE_695140 Chr11 22440427 22440426 + RETRO2_LTR 12874 0.5207 (1556/2988) 0 * Os_TE_695141 Os_TE_695138 Chr11 22440202 22440201 + COPI2_LTR 4733 0.0003 (1/2994) 0 * * Os_TE_695124 Chr11 22437007 22437008 + TYPEU4 402 0.0327 (69/2112) 0 * Os_TE_695123 Os_TE_695123 Chr11 22436999 22436998 - TYPEU1 380 0.0290 (73/2513) 0 * Os_TE_695124 Os_TE_695117 Chr11 22435275 22435274 + RIREX_LTR 8828 0.0151 (45/2985) 0 * * Os_TE_695115 Chr11 22432313 22432314 + MUDRN1_OS 764 0.1057 (315/2980) 0 * Os_TE_695114 Os_TE_695114 Chr11 22432305 22432304 - MUDRN1_OS 764 0.1096 (326/2975) 0 * Os_TE_695115 Os_TE_695113 Chr11 22432097 22432098 - ORSgTEMT00500099 142 0.0024 (7/2975) 0 * * Os_TE_695108 Chr11 22429604 22429603 + CACTA-B 1103 0.7559 (2193/2901) 0 * Os_TE_695107 Os_TE_695107 Chr11 22429598 22429599 + ORSgTETN00200005 1121 0.7346 (2009/2735) 0 * Os_TE_695108 Os_TE_695104 Chr11 22428136 22428135 + SEVERIN-2 1952 0.8370 (2305/2754) 0 * * Os_TE_695103 Chr11 22426501 22426500 + NDNA1TNA_OS 334 0.0285 (79/2773) 0 * Os_TE_695102 Os_TE_695102 Chr11 22426499 22426500 + ORSgTEMT00100531 325 0.0403 (77/1911) 0 * Os_TE_695103 Os_TE_695098 Chr11 22425915 22425914 + EnSpm-12_OS 12603 0.0367 (101/2755) 0 * * Os_TE_695096 Chr11 22425780 22425779 + TRUNCATOR 2918 0.0259 (61/2355) 0 * Os_TE_695095 Os_TE_695095 Chr11 22425779 22425780 - TRUNCATOR 2918 0.0214 (50/2337) 0 * Os_TE_695096 Os_TE_695090 Chr11 22422657 22422656 + SZ-COM 1308 0.0003 (1/2866) 0 * * Os_TE_695088 Chr11 22419126 22419127 + MUDRN3_OS 903 0.0318 (90/2827) 0 * Os_TE_695087 Os_TE_695087 Chr11 22419118 22419117 + MUDRN3_OS 903 0.0328 (91/2772) 0 * Os_TE_695088 Os_TE_695084 Chr11 22417482 22417728 + STOWAWAY51_OS 246 0.8014 (444/554) 1 Intact * Os_TE_695079 Chr11 22417359 22417038 + NDNA1TNA_OS 334 0.1610 (442/2746) 1 Intact Os_TE_695077 Os_TE_695077 Chr11 22417035 22417362 + ORSgTEMT00101674 340 0.1605 (441/2747) 1 Intact Os_TE_695079 Os_TE_695058 Chr11 22412422 22412421 - INDITTO 263 0.0139 (13/932) 0 * * Os_TE_695016 Chr11 22387868 22387869 + EnSpm-13_OS 11171 0.0121 (10/825) 0 * Os_TE_695015 Os_TE_695015 Chr11 22387866 22387865 - EnSpm-13_OS 11171 0.0116 (9/775) 0 * Os_TE_695016 Os_TE_695012 Chr11 22385880 22385881 - ORSgTETN00200001 10994 0.0673 (52/773) 0 * * Os_TE_695007 Chr11 22381576 22381575 - SZ-22_LTR 4403 0.0018 (2/1126) 0 * * Os_TE_695000 Chr11 22378962 22378724 + ORSgTEMT01602181 239 0.5417 (649/1198) 1 Intact Os_TE_694999 Os_TE_694999 Chr11 22378724 22378957 - ORSgTEMT01602404 253 0.5267 (602/1143) 1 Intact Os_TE_695000 Os_TE_694988 Chr11 22373358 22373838 - ORMOSIA 482 0.6509 (798/1226) 1 Intact * Os_TE_694987 Chr11 22373303 22371794 - CLOUD-6 508 0.6485 (799/1232) 1 Intact Os_TE_694986 Os_TE_694986 Chr11 22371793 22373303 - CLOUD-6 508 0.6352 (780/1228) 1 Intact Os_TE_694987 Os_TE_694982 Chr11 22370591 22370590 + SZ-9LTR 965 0.0153 (19/1243) 0 * * Os_TE_694978 Chr11 22366556 22366557 + SEVERIN-2 1952 0.0721 (90/1248) 0 * * Os_TE_694957 Chr11 22355237 22355236 - OSTONOR1_LTR 6440 0.0042 (4/951) 0 * * Os_TE_694898 Chr11 22335956 22335957 + TWIFB1 3737 0.0011 (1/902) 0 * * Os_TE_694897 Chr11 22335504 22335505 + RIREX_LTR 8828 0.0974 (90/924) 0 * * Os_TE_694859 Chr11 22319724 22319723 + HELITRON7_OS 10153 0.0161 (45/2795) 0 * * Os_TE_694821 Chr11 22305631 22305630 - ORSgTEMT00901723 248 0.0057 (17/2970) 0 * Os_TE_694820 Os_TE_694820 Chr11 22305627 22305628 - ORSgTEMT00900099 250 0.0054 (16/2951) 0 * Os_TE_694821 Os_TE_694816 Chr11 22305017 22305016 - DS-RICE2N 613 0.0071 (21/2971) 0 * * Os_TE_694815 Chr11 22304088 22304089 - ORSiTERTOOT00074 4935 0.0007 (2/2948) 0 * Os_TE_694814 Os_TE_694814 Chr11 22304084 22304083 + ORSiTERTOOT00074 4935 0.0007 (2/2942) 0 * Os_TE_694815 Os_TE_694813 Chr11 22304080 22304081 - ORSiTERTOOT00138 2740 0.0010 (3/2955) 0 * * Os_TE_694812 Chr11 22303750 22303751 + COPIA2-LTR_OS 6433 0.0551 (164/2976) 0 * Os_TE_694811 Os_TE_694811 Chr11 22303746 22303745 - COPIA2-LTR_OS 6433 0.0584 (174/2980) 0 * Os_TE_694812 Os_TE_694801 Chr11 22299318 22299319 + SEVERIN-2 1952 0.0022 (6/2775) 0 * * Os_TE_694792 Chr11 22297056 22297055 - ORSgTEMT01601493 303 0.7067 (2019/2857) 0 * * Os_TE_694781 Chr11 22288129 22288130 - ENSPM6_OS 9815 0.0158 (47/2979) 0 * * Os_TE_694769 Chr11 22285243 22285104 - ORSgTEMT00500205 140 0.4218 (1235/2928) 1 Intact Os_TE_694768 Os_TE_694768 Chr11 22285098 22285240 - ORSgTEMT00501356 145 0.4249 (1231/2897) 1 Intact Os_TE_694769 Os_TE_694764 Chr11 22284777 22284778 + STOWAWAY13_OS 251 0.0004 (1/2664) 0 * * Os_TE_694763 Chr11 22284199 22282929 - MERMITE18C 1473 0.4597 (1238/2693) 1 Intact Os_TE_694760 Os_TE_694760 Chr11 22282929 22284198 + MERMITE18C 1473 0.4706 (1312/2788) 1 Intact Os_TE_694763 Os_TE_694756 Chr11 22281441 22281442 - AMYLTP 383 0.0040 (12/2970) 0 * Os_TE_694755 Os_TE_694755 Chr11 22281433 22281432 + AMYLTP 383 0.0051 (15/2964) 0 * Os_TE_694756 Os_TE_694754 Chr11 22281281 22281282 + ORSgTETNOOT00032 218 0.0625 (182/2912) 0 * * Os_TE_694752 Chr11 22280859 22280858 - ORSgTEMT00501259 146 0.0010 (3/2861) 0 * * Os_TE_694751 Chr11 22280582 22280581 - ORSgTEMT01400015 213 0.0188 (55/2931) 0 * Os_TE_694750 Os_TE_694750 Chr11 22280576 22280577 + ORSgTEMT01400031 216 0.0198 (58/2936) 0 * Os_TE_694751 Os_TE_694749 Chr11 22280010 22280011 + ORSgTEMT05000092 279 0.0208 (62/2987) 0 * Os_TE_694748 Os_TE_694748 Chr11 22280008 22280007 - SUSU 279 0.0201 (60/2990) 0 * Os_TE_694749 Os_TE_694743 Chr11 22276762 22276763 + ORSiTERTOOT00174 2237 0.0010 (3/2982) 0 * * Os_TE_694732 Chr11 22269773 22269774 + ORSiTERTOOT00296 5553 0.0013 (4/2989) 0 * Os_TE_694731 Os_TE_694731 Chr11 22269769 22269768 - SC-3_LTR 5748 0.0014 (4/2916) 0 * Os_TE_694732 Os_TE_694724 Chr11 22266970 22266971 - MUDRN3_OS 903 0.0610 (177/2901) 0 * * Os_TE_694719 Chr11 22264791 22264792 - ORSgTEMT01602292 239 0.0551 (162/2940) 0 * * Os_TE_694716 Chr11 22263984 22263983 + INDITTO 263 0.0297 (89/2993) 0 * * Os_TE_694708 Chr11 22263291 22263290 + NDNA1TNA_OS 334 0.0013 (4/2987) 0 * Os_TE_694707 Os_TE_694707 Chr11 22263284 22263285 + ORSgTEMT00100272 356 0.0013 (4/2989) 0 * Os_TE_694708 Os_TE_694704 Chr11 22261644 22261645 - SC-3_LTR 5748 0.0003 (1/2997) 0 * Os_TE_694703 Os_TE_694703 Chr11 22261640 22261639 + ORSiTERTOOT00296 5553 0.0003 (1/2996) 0 * Os_TE_694704 Os_TE_694702 Chr11 22261564 22261565 + ORSiTERTOOT00296 5553 0.0003 (1/2996) 0 * Os_TE_694701 Os_TE_694701 Chr11 22261560 22261559 - SC-3_LTR 5748 0.0003 (1/2994) 0 * Os_TE_694702 Os_TE_694700 Chr11 22261518 22261519 + MPING 430 0.0003 (1/2998) 0 * Os_TE_694699 Os_TE_694699 Chr11 22261516 22261515 - MPING 430 0.0003 (1/2997) 0 * Os_TE_694700 Os_TE_694698 Chr11 22261435 22261436 - F569 228 0.0184 (55/2994) 0 * Os_TE_694697 Os_TE_694697 Chr11 22261434 22261433 + F569 228 0.0177 (53/2995) 0 * Os_TE_694698 Os_TE_694681 Chr11 22255510 22255511 + ORSiTEMT00100001 540 0.0032 (8/2497) 0 * * Os_TE_694678 Chr11 22254785 22254786 - NDNA1TNA_OS 334 0.0052 (15/2896) 0 * Os_TE_694677 Os_TE_694677 Chr11 22254783 22254782 + NDNA1TNA_OS 334 0.0052 (15/2893) 0 * Os_TE_694678 Os_TE_694672 Chr11 22253634 22253635 - MPING 430 0.0003 (1/2990) 0 * Os_TE_694671 Os_TE_694671 Chr11 22253632 22253631 + MPING 430 0.0003 (1/2991) 0 * Os_TE_694672 Os_TE_694670 Chr11 22253209 22253210 - ORSgTETNOOT00754 253 0.0010 (3/2979) 0 * Os_TE_694669 Os_TE_694669 Chr11 22253205 22253204 + ORSgTETNOOT01686 252 0.0010 (3/2979) 0 * Os_TE_694670 Os_TE_694659 Chr11 22250182 22250183 - OSTE20 496 0.0027 (8/2998) 0 * Os_TE_694658 Os_TE_694658 Chr11 22250178 22250177 + OSTE20 496 0.0023 (7/2999) 0 * Os_TE_694659 Os_TE_694644 Chr11 22246251 22246252 + RETRO2A_LTR 12895 0.0051 (15/2932) 0 * * Os_TE_694630 Chr11 22244559 22244558 - STOWAWAY51_OS 246 0.0003 (1/2989) 0 * Os_TE_694629 Os_TE_694629 Chr11 22244556 22244557 + ORSgTEMT01601591 242 0.0003 (1/2991) 0 * Os_TE_694630 Os_TE_694628 Chr11 22241660 22241661 + OLO24 345 0.0047 (14/2970) 0 * Os_TE_694627 Os_TE_694627 Chr11 22241658 22241657 - OLO24 345 0.0047 (14/2976) 0 * Os_TE_694628 Os_TE_694615 Chr11 22240152 22240153 + OSTE33 1012 0.0313 (93/2972) 0 * Os_TE_694614 Os_TE_694614 Chr11 22240143 22240142 + OSTE33 1012 0.0286 (85/2970) 0 * Os_TE_694615 Os_TE_694579 Chr11 22231281 22231282 - RIREX_LTR 8828 0.0114 (34/2985) 0 * * Os_TE_694568 Chr11 22222474 22222473 + ORSgTETNOOT00221 261 0.0024 (7/2974) 0 * * Os_TE_694567 Chr11 22222407 22222408 - NDNA1TNA_OS 334 0.1360 (407/2993) 0 * * Os_TE_694559 Chr11 22219743 22219744 + ORSgTEMT01602181 239 0.0043 (13/2995) 0 * * Os_TE_694555 Chr11 22215808 22215807 - OSTE17 734 0.0047 (14/2995) 0 * * Os_TE_694552 Chr11 22215180 22215179 - TRUNCATOR 2918 0.5291 (1217/2300) 0 * * Os_TE_694535 Chr11 22205331 22205332 - RIRE3A_LTR 10580 0.0200 (25/1248) 0 * * Os_TE_694532 Chr11 22204383 22204382 + MDR2 6967 0.5009 (555/1108) 0 * Os_TE_694531 Os_TE_694531 Chr11 22204381 22204382 - MDR2 6967 0.4790 (421/879) 0 * Os_TE_694532 Os_TE_694505 Chr11 22188293 22188292 + HELITRON3_OS 12693 0.0993 (144/1450) 0 * Os_TE_694504 Os_TE_694504 Chr11 22188292 22188293 - HELITRON3_OS 12693 0.0991 (143/1443) 0 * Os_TE_694505 Os_TE_694492 Chr11 22182096 22182097 - ORSiTERTOOT00074 4935 0.0007 (1/1437) 0 * Os_TE_694491 Os_TE_694491 Chr11 22182092 22182091 + ORSiTERTOOT00074 4935 0.0007 (1/1430) 0 * Os_TE_694492 Os_TE_694490 Chr11 22181861 22181862 - NDNA2TNA_OS 346 0.1014 (126/1243) 0 * Os_TE_694489 Os_TE_694489 Chr11 22181859 22181858 + NDNA2TNA_OS 346 0.0842 (122/1449) 0 * Os_TE_694490 Os_TE_694488 Chr11 22181824 22181825 + RIRE2_LTR 11306 0.1404 (201/1432) 0 * Os_TE_694487 Os_TE_694487 Chr11 22181820 22181819 - RIRE2_LTR 11306 0.0956 (130/1360) 0 * Os_TE_694488 Os_TE_694486 Chr11 22181796 22181797 - TYPEU1 380 0.4938 (1149/2327) 0 * * Os_TE_694484 Chr11 22180533 22180532 + OSTE33 1012 0.1389 (329/2369) 0 * * Os_TE_694476 Chr11 22173439 22173192 - STOWAWAY51_OS 246 0.1355 (402/2966) 1 Intact Os_TE_694472 Os_TE_694472 Chr11 22173190 22173439 + STOWAWAY51_OS 246 0.1337 (397/2969) 1 Intact Os_TE_694476 Os_TE_694470 Chr11 22172690 22172689 - ORSgTEMT02400246 177 0.0043 (3/705) 0 * Os_TE_694469 Os_TE_694469 Chr11 22172689 22172690 - TYPEM 227 0.0010 (3/2965) 0 * Os_TE_694470 Os_TE_694457 Chr11 22168890 22168889 - SC-8_LTR 4951 0.0007 (2/2911) 0 * * Os_TE_694449 Chr11 22161407 22161408 - AMYLTP 383 0.0174 (52/2981) 0 * Os_TE_694448 Os_TE_694448 Chr11 22161399 22161398 + AMYLTP 383 0.0168 (50/2975) 0 * Os_TE_694449 Os_TE_694447 Chr11 22161049 22161050 + ORSiTERTOOT00296 5553 0.0003 (1/2992) 0 * Os_TE_694446 Os_TE_694446 Chr11 22161045 22161044 - SC-3_LTR 5748 0.0003 (1/2992) 0 * Os_TE_694447 Os_TE_694441 Chr11 22159321 22159322 - MERMITEB 1610 0.8587 (2328/2711) 0 * * Os_TE_694439 Chr11 22158892 22157521 + MERMITE18B 1306 0.1716 (410/2389) 1 Intact Os_TE_694434 Os_TE_694434 Chr11 22157521 22158892 - MERMITE18B 1306 0.1537 (410/2668) 1 Intact Os_TE_694439 Os_TE_694423 Chr11 22146752 22146753 - NDNA1TNA_OS 334 0.3525 (907/2573) 0 * Os_TE_694422 Os_TE_694422 Chr11 22146751 22146750 + ORSgTEMT00101341 314 0.2950 (854/2895) 0 * Os_TE_694423 Os_TE_694419 Chr11 22146066 22146067 + ORSgTETNOOT01219 231 0.0340 (102/2997) 0 * * Os_TE_694403 Chr11 22137103 22137102 + RETRO1_LTR 8314 0.0004 (1/2782) 0 * * Os_TE_694388 Chr11 22129216 22129217 + TWIF 586 0.0057 (13/2268) 0 * Os_TE_694387 Os_TE_694387 Chr11 22129209 22129208 - ORSiTETNOOT00200 3563 0.0057 (13/2269) 0 * Os_TE_694388 Os_TE_694385 Chr11 22129040 22129039 + RETROFIT5_LTR 4785 0.4691 (1064/2268) 0 * * Os_TE_694363 Chr11 22120254 22120255 - ORSiTEMT01300001 950 0.0278 (35/1260) 0 * Os_TE_694362 Os_TE_694362 Chr11 22120249 22120248 + KRISPIE 956 0.0253 (34/1345) 0 * Os_TE_694363 Os_TE_694309 Chr11 22084070 22084071 - ORSiTEMT01300001 950 0.0066 (9/1358) 0 * * Os_TE_694285 Chr11 22071494 22071495 - RETRO1_LTR 8314 0.1092 (295/2701) 0 * Os_TE_694284 Os_TE_694284 Chr11 22071490 22071489 + RETRO2A_LTR 12895 0.1054 (283/2685) 0 * Os_TE_694285 Os_TE_694262 Chr11 22065514 22065515 + RIREX_LTR 8828 0.0032 (9/2795) 0 * Os_TE_694261 Os_TE_694261 Chr11 22065510 22065509 - RIREX_LTR 8828 0.0031 (9/2945) 0 * Os_TE_694262 Os_TE_694259 Chr11 22064957 22064958 - COPIA2-LTR_OS 6433 0.0004 (1/2768) 0 * * Os_TE_694250 Chr11 22062619 22062620 + GYPSY-A_LTR 8951 0.0004 (1/2680) 0 * Os_TE_694249 Os_TE_694249 Chr11 22062615 22062614 - GYPSY-A_LTR 8951 0.0004 (1/2652) 0 * Os_TE_694250 Os_TE_694222 Chr11 22051595 22051596 - COPIA2-LTR_OS 6433 0.0004 (1/2775) 0 * Os_TE_694221 Os_TE_694221 Chr11 22051591 22051590 + COPIA2-LTR_OS 6433 0.0004 (1/2776) 0 * Os_TE_694222 Os_TE_694211 Chr11 22046322 22046323 - RIREX_LTR 8828 0.0010 (3/2961) 0 * Os_TE_694210 Os_TE_694210 Chr11 22046318 22046317 + RIREX_LTR 8828 0.0013 (4/2967) 0 * Os_TE_694211 Os_TE_694192 Chr11 22037007 22037008 + RETRO1_LTR 8314 0.0004 (1/2842) 0 * Os_TE_694191 Os_TE_694191 Chr11 22037003 22037002 - RETRO1_LTR 8314 0.0004 (1/2844) 0 * Os_TE_694192 Os_TE_694171 Chr11 22034141 22034142 + RIREX_LTR 8828 0.0027 (8/2994) 0 * Os_TE_694170 Os_TE_694170 Chr11 22034137 22034136 - RIREX_LTR 8828 0.0030 (9/2992) 0 * Os_TE_694171 Os_TE_694165 Chr11 22031184 22031185 + ORSiTERTOOT00033 4884 0.0007 (2/2763) 0 * Os_TE_694164 Os_TE_694164 Chr11 22031181 22031180 - RETROFIT_LTR 4866 0.0007 (2/2762) 0 * Os_TE_694165 Os_TE_694163 Chr11 22030500 22030499 - ORSgTEMT01900024 348 0.0742 (222/2993) 0 * * Os_TE_694162 Chr11 22030009 22030008 + ORSgTEMT00600272 361 0.0134 (40/2993) 0 * * Os_TE_694161 Chr11 22029675 22029674 - ORSgTEMT01600639 228 0.0748 (224/2995) 0 * Os_TE_694160 Os_TE_694160 Chr11 22029672 22029673 - ORSgTEMT01601208 238 0.0752 (225/2994) 0 * Os_TE_694161 Os_TE_694148 Chr11 22024685 22024686 - TELIA 141 0.0027 (8/2984) 0 * Os_TE_694147 Os_TE_694147 Chr11 22024677 22024676 + TELIA 141 0.0027 (8/2971) 0 * Os_TE_694148 Os_TE_694146 Chr11 22024613 22024614 - ENSPM4_OS 11610 0.0945 (281/2975) 0 * * Os_TE_694126 Chr11 22019921 22019922 + INDITTO 263 0.0436 (91/2085) 0 * Os_TE_694125 Os_TE_694125 Chr11 22019919 22019918 + ORSgTETNOOT00221 261 0.0341 (92/2700) 0 * Os_TE_694126 Os_TE_694117 Chr11 22018443 22018442 + SEVERIN-2 1952 0.0643 (186/2891) 0 * * Os_TE_694115 Chr11 22018008 22018007 - SZ-COM 1308 0.0007 (2/2748) 0 * * Os_TE_694114 Chr11 22016865 22016866 + COPI2_LTR 4733 0.0007 (2/2953) 0 * Os_TE_694113 Os_TE_694113 Chr11 22016861 22016860 - COPI2_LTR 4733 0.0007 (2/2766) 0 * Os_TE_694114 Os_TE_694106 Chr11 22015701 22015702 + RETROSAT2LTR 12796 0.0030 (9/2969) 0 * Os_TE_694105 Os_TE_694105 Chr11 22015699 22015698 - RETROSAT2LTR 12796 0.0034 (10/2903) 0 * Os_TE_694106 Os_TE_694102 Chr11 22014871 22014870 - NDNA1TNA_OS 334 0.0788 (230/2920) 0 * * Os_TE_694101 Chr11 22014061 22014060 + ORSgTEMT03000039 377 0.1337 (224/1675) 0 * * Os_TE_694095 Chr11 22011133 22011132 + STOWAWAY21_OS 243 0.0485 (145/2992) 0 * * Os_TE_694092 Chr11 22010682 22010683 - ORSiTERTOOT00074 4935 0.0003 (1/2998) 0 * Os_TE_694091 Os_TE_694091 Chr11 22010678 22010677 + ORSiTERTOOT00074 4935 0.0003 (1/2997) 0 * Os_TE_694092 Os_TE_694090 Chr11 22007758 22007759 + ORSiTERTOOT00296 5553 0.0003 (1/2993) 0 * * Os_TE_694087 Chr11 22006972 22006971 - SC-8_LTR 4951 0.0007 (2/2975) 0 * * Os_TE_694084 Chr11 22004490 22004491 - AMYLTP 383 0.0421 (126/2995) 0 * Os_TE_694083 Os_TE_694083 Chr11 22004482 22004481 + AMYLTP 383 0.0421 (126/2994) 0 * Os_TE_694084 Os_TE_694073 Chr11 22002441 22002440 + TRUNCATOR2_LTR 2904 0.0007 (2/2757) 0 * * Os_TE_694072 Chr11 22002192 22002193 - TRUNCATOR2_LTR 2904 0.0007 (2/2940) 0 * * Os_TE_694067 Chr11 22001503 22001504 + GYPSY-A_LTR 8951 0.0048 (14/2927) 0 * * Os_TE_694058 Chr11 22000451 22000452 + RIREX_LTR 8828 0.0003 (1/2988) 0 * * Os_TE_694050 Chr11 21997343 21997344 + RIREX_LTR 8828 0.0004 (1/2762) 0 * Os_TE_694049 Os_TE_694049 Chr11 21997339 21997338 - RIREX_LTR 8828 0.0003 (1/2983) 0 * Os_TE_694050 Os_TE_694039 Chr11 21995563 21995564 + ORSgTETNOOT01834 251 0.0007 (2/2945) 0 * Os_TE_694038 Os_TE_694038 Chr11 21995559 21995558 + ORSgTETNOOT01686 252 0.0007 (2/2949) 0 * Os_TE_694039 Os_TE_694031 Chr11 21991861 21991860 + OSTE18 129 0.0013 (4/2989) 0 * * Os_TE_694020 Chr11 21990915 21990916 + NDNA1TNA_OS 334 0.0523 (153/2923) 0 * * Os_TE_694019 Chr11 21990638 21990637 - ORSgTEMT02400246 177 0.0050 (15/2985) 0 * Os_TE_694018 Os_TE_694018 Chr11 21990637 21990638 - TYPEM 227 0.0054 (16/2990) 0 * Os_TE_694019 Os_TE_693980 Chr11 21980119 21980118 + ORSgTEMT00100531 325 0.0259 (77/2974) 0 * Os_TE_693979 Os_TE_693979 Chr11 21980118 21980119 + ORSgTEMT00101674 340 0.0255 (76/2983) 0 * Os_TE_693980 Os_TE_693976 Chr11 21979615 21979614 - ORSgTEMT00900099 250 0.0751 (224/2984) 0 * * Os_TE_693974 Chr11 21979418 21979417 + ORSgTEMT00901844 250 0.8315 (2478/2980) 0 * * Os_TE_693973 Chr11 21978896 21978897 - ORSgTETNOOT00477 252 0.0004 (1/2775) 0 * Os_TE_693972 Os_TE_693972 Chr11 21978891 21978890 + ORSgTETNOOT01531 255 0.0004 (1/2781) 0 * Os_TE_693973 Os_TE_693964 Chr11 21977852 21977853 - ORSgTEMT01601493 303 0.0484 (142/2934) 0 * * Os_TE_693961 Chr11 21977406 21977407 - MDR2 6967 0.0003 (1/2986) 0 * Os_TE_693960 Os_TE_693960 Chr11 21977398 21977397 + MDR2 6967 0.0003 (1/2989) 0 * Os_TE_693961 Os_TE_693956 Chr11 21977057 21977056 + TRUNCATOR 2918 0.3686 (1102/2990) 0 * Os_TE_693955 Os_TE_693955 Chr11 21977056 21977057 - TRUNCATOR 2918 0.3634 (1085/2986) 0 * Os_TE_693956 Os_TE_693954 Chr11 21976976 21976977 + COPIA2-LTR_OS 6433 0.0074 (22/2968) 0 * Os_TE_693953 Os_TE_693953 Chr11 21976972 21976971 - COPIA2-LTR_OS 6433 0.0082 (23/2810) 0 * Os_TE_693954 Os_TE_693950 Chr11 21976703 21976702 - NDNA1TNA_OS 334 0.0958 (285/2974) 0 * * Os_TE_693944 Chr11 21975468 21975467 - NDNA1TNA_OS 334 0.0768 (227/2955) 0 * * Os_TE_693942 Chr11 21973149 21973150 + NDNA1TNA_OS 334 0.0717 (211/2942) 0 * * Os_TE_693935 Chr11 21972231 21972232 - ORSgTEMT01602413 239 0.0718 (210/2926) 0 * * Os_TE_693932 Chr11 21971778 21971777 - ORSgTEMT01600662 238 0.0593 (172/2900) 0 * * Os_TE_693931 Chr11 21971636 21971635 + TEOS1 476 0.0004 (1/2741) 0 * * Os_TE_693920 Chr11 21970986 21970987 + ORSgTEMT01400032 215 0.0694 (205/2955) 0 * * Os_TE_693914 Chr11 21970195 21970194 + ORSgTEMT01600726 235 0.0011 (3/2812) 0 * * Os_TE_693905 Chr11 21967786 21967785 - ORSgTETNOOT01607 258 0.0766 (229/2989) 0 * * Os_TE_693903 Chr11 21966537 21966536 - STOWAWAY51_OS 246 0.0003 (1/2981) 0 * Os_TE_693902 Os_TE_693902 Chr11 21966531 21966532 + STOWAWAY51_OS 246 0.0004 (1/2654) 0 * Os_TE_693903 Os_TE_693896 Chr11 21965439 21965440 + ORSgTETNOOT00908 242 0.0758 (210/2771) 0 * Os_TE_693895 Os_TE_693895 Chr11 21965433 21965432 + ORSgTETNOOT01219 231 0.0704 (195/2768) 0 * Os_TE_693896 Os_TE_693894 Chr11 21964408 21964407 + ORSgTEMT01400039 200 0.8364 (2465/2947) 0 * * Os_TE_693893 Chr11 21964188 21964187 + ORSgTEMT00101046 330 0.0004 (1/2739) 0 * * Os_TE_693890 Chr11 21963633 21963634 + ORSgTEMT01701024 150 0.0777 (230/2960) 0 * Os_TE_693889 Os_TE_693889 Chr11 21963630 21963629 - STOWAWAY1_OS 149 0.0767 (227/2960) 0 * Os_TE_693890 Os_TE_693887 Chr11 21962588 21962589 + SPMLIKE 10989 0.0165 (49/2969) 0 * Os_TE_693886 Os_TE_693886 Chr11 21962586 21962585 - ORSgTETN00200001 10994 0.0140 (39/2785) 0 * Os_TE_693887 Os_TE_693885 Chr11 21962444 21962443 - TEMPINDAS 4259 0.0484 (145/2995) 0 * * Os_TE_693884 Chr11 21962088 21962089 + EnSpm-13_OS 11171 0.0007 (2/2997) 0 * Os_TE_693883 Os_TE_693883 Chr11 21962086 21962085 - EnSpm-13_OS 11171 0.0007 (2/2995) 0 * Os_TE_693884 Os_TE_693882 Chr11 21962035 21962036 + ORSgTETNOOT01834 251 0.0656 (194/2957) 0 * Os_TE_693881 Os_TE_693881 Chr11 21962031 21962030 + ORSgTETNOOT01686 252 0.0759 (226/2979) 0 * Os_TE_693882 Os_TE_693879 Chr11 21961730 21961731 - ORSgTEMT00500753 148 0.0708 (211/2980) 0 * * Os_TE_693861 Chr11 21959048 21959049 + TRUNCATOR 2918 0.0010 (3/2954) 0 * * Os_TE_693746 Chr11 21920286 21920287 - OLO24 345 0.0434 (130/2992) 0 * * Os_TE_693741 Chr11 21919564 21919563 + SZ-67LTR 1540 0.0552 (127/2301) 0 * * Os_TE_693729 Chr11 21915935 21915936 - OSTE24 683 0.0027 (8/2986) 0 * * Os_TE_693725 Chr11 21915647 21915646 + COPIA2-LTR_OS 6433 0.0018 (5/2776) 0 * * Os_TE_693697 Chr11 21905870 21905869 - STOWAWAY51_OS 246 0.0179 (53/2967) 0 * * Os_TE_693694 Chr11 21905338 21905339 + SZ-62LTR 3649 0.0216 (62/2877) 0 * * Os_TE_693673 Chr11 21901895 21901896 + STOWAWAY45_OS 266 0.0232 (69/2980) 0 * * Os_TE_693670 Chr11 21901824 21901303 - ORSgTEMT00900099 250 0.1888 (563/2982) 1 Intact Os_TE_693663 Os_TE_693663 Chr11 21901301 21901822 + ORSgTEMT00901844 250 0.1931 (576/2983) 1 Intact Os_TE_693670 Os_TE_693648 Chr11 21899214 21899213 + ORSiTETNOOT00107 906 0.8480 (2433/2869) 0 * * Os_TE_693642 Chr11 21897944 21897945 - RIRE2_LTR 11306 0.1064 (48/451) 0 * Os_TE_693641 Os_TE_693641 Chr11 21897940 21897939 - ORSgTERT00201216 11284 0.0185 (46/2488) 0 * Os_TE_693642 Os_TE_693632 Chr11 21893017 21893018 - MUDRN1_OS 764 0.0200 (60/2993) 0 * Os_TE_693631 Os_TE_693631 Chr11 21893009 21893008 + MUDRN1_OS 764 0.0204 (61/2992) 0 * Os_TE_693632 Os_TE_693626 Chr11 21889118 21889119 + STOWAWAY43_OS 233 0.1270 (97/764) 0 * * Os_TE_693616 Chr11 21867180 21867181 - NDNA1TNA_OS 334 0.0018 (1/548) 0 * * Os_TE_693590 Chr11 21853164 21853165 + ENSPM4_OS 11610 0.0003 (1/2993) 0 * * Os_TE_693589 Chr11 21853042 21852689 + ORSgTEMT00600124 361 0.0804 (240/2984) 1 Intact Os_TE_693587 Os_TE_693587 Chr11 21852685 21853042 + CASTAWAY 364 0.0783 (234/2989) 1 Intact Os_TE_693589 Os_TE_693585 Chr11 21852610 21852247 - ORSgTEMT00600524 364 0.0780 (233/2989) 1 Intact Os_TE_693583 Os_TE_693583 Chr11 21852247 21852607 + ORSgTEMT00600272 361 0.0797 (238/2987) 1 Intact Os_TE_693585 Os_TE_693582 Chr11 21850147 21850146 + ORSgTEMT01600474 238 0.4785 (1237/2585) 0 * Os_TE_693581 Os_TE_693581 Chr11 21850142 21850143 - ORSgTEMT01600520 239 0.4896 (1362/2782) 0 * Os_TE_693582 Os_TE_693559 Chr11 21839121 21839122 + ORSgTETNOOT01145 249 0.2490 (710/2851) 0 * * Os_TE_693547 Chr11 21837590 21837589 + OSTE20 496 0.0003 (1/2888) 0 * * Os_TE_693543 Chr11 21826480 21837500 + SPMLIKE 10989 0.0728 (211/2898) 1 Intact * Os_TE_693522 Chr11 21811541 21811542 + ORSgTEMT00901844 250 0.1079 (117/1084) 0 * * Os_TE_693520 Chr11 21811301 21811300 + STOWAWAY13_OS 251 0.5455 (828/1518) 0 * * Os_TE_693516 Chr11 21809886 21809885 - TYPEM 227 0.0363 (108/2979) 0 * Os_TE_693515 Os_TE_693515 Chr11 21809885 21809886 - ORSgTEMT02400246 177 0.0374 (111/2971) 0 * Os_TE_693516 Os_TE_693495 Chr11 21802152 21802153 - AMYLTP 383 0.0007 (2/2979) 0 * Os_TE_693494 Os_TE_693494 Chr11 21802144 21802143 + AMYLTP 383 0.0008 (2/2629) 0 * Os_TE_693495 Os_TE_693491 Chr11 21800345 21800346 + TWIFBIG 3567 0.0998 (258/2584) 0 * Os_TE_693490 Os_TE_693490 Chr11 21800338 21800337 - ORSiTETNOOT00200 3563 0.1000 (266/2660) 0 * Os_TE_693491 Os_TE_693469 Chr11 21789504 21789505 + ORSgTETNOOT01998 254 0.0839 (213/2540) 0 * * Os_TE_693463 Chr11 21788603 21788602 - ORSgTETN00200001 10994 0.0004 (1/2586) 0 * * Os_TE_693461 Chr11 21786755 21786756 - COPIA2-LTR_OS 6433 0.0023 (6/2574) 0 * Os_TE_693460 Os_TE_693460 Chr11 21786751 21786750 + COPIA2-LTR_OS 6433 0.0023 (6/2572) 0 * Os_TE_693461 Os_TE_693459 Chr11 21786316 21786317 + SZ-54_LTR 5203 0.0003 (1/2870) 0 * * Os_TE_693458 Chr11 21786023 21786022 + SEVERIN-2 1952 0.0712 (201/2825) 0 * * Os_TE_693455 Chr11 21785547 21785548 + RETRO1_LTR 8314 0.0215 (55/2562) 0 * Os_TE_693454 Os_TE_693454 Chr11 21785543 21785542 - RETRO1_LTR 8314 0.0211 (54/2556) 0 * Os_TE_693455 Os_TE_693452 Chr11 21784095 21784096 - GYPSY1-LTR_OS 8900 0.0031 (8/2581) 0 * Os_TE_693451 Os_TE_693451 Chr11 21784091 21784090 + GYPSY-B_LTR 7068 0.0031 (8/2583) 0 * Os_TE_693452 Os_TE_693416 Chr11 21755048 21755047 + SETARIA2 1142 0.0036 (10/2787) 0 * * Os_TE_693413 Chr11 21752152 21752153 - OSLINE1-3 6101 0.0004 (1/2242) 0 * * Os_TE_693391 Chr11 21739254 21739255 + RIRE2_LTR 11306 0.0171 (42/2459) 0 * Os_TE_693390 Os_TE_693390 Chr11 21739250 21739249 - RIRE2_LTR 11306 0.0183 (45/2457) 0 * Os_TE_693391 Os_TE_693388 Chr11 21739111 21739110 + TRUNCATOR 2918 0.4735 (1145/2418) 0 * * Os_TE_693387 Chr11 21738410 21738411 - RETRO1_LTR 8314 0.0271 (67/2471) 0 * * Os_TE_693382 Chr11 21737604 21737603 - TRUNCATOR 2918 0.0025 (6/2418) 0 * Os_TE_693381 Os_TE_693381 Chr11 21737603 21737604 + TRUNCATOR 2918 0.0025 (6/2389) 0 * Os_TE_693382 Os_TE_693365 Chr11 21729436 21729437 + NDNA2TNA_OS 346 0.0860 (219/2547) 0 * Os_TE_693364 Os_TE_693364 Chr11 21729434 21729433 - NDNA2TNA_OS 346 0.0837 (213/2545) 0 * Os_TE_693365 Os_TE_693340 Chr11 21722202 21718641 - ORSiTETNOOT00200 3563 0.0771 (222/2881) 1 Intact Os_TE_693339 Os_TE_693339 Chr11 21718641 21722201 + TWIFBIG 3567 0.0413 (116/2807) 1 Intact Os_TE_693340 Os_TE_693329 Chr11 21717511 21717664 + ORSgTEMT01701591 154 0.8721 (2379/2728) 1 Intact * Os_TE_693328 Chr11 21717450 21717449 + ORSgTEMT01601591 242 0.0028 (8/2837) 0 * * Os_TE_693310 Chr11 21713430 21713429 - TYPEM 227 0.0422 (108/2559) 0 * Os_TE_693309 Os_TE_693309 Chr11 21713429 21713430 - ORSgTEMT02400246 177 0.0421 (108/2565) 0 * Os_TE_693310 Os_TE_693299 Chr11 21706524 21706525 - SZ-9LTR 965 0.0003 (1/2990) 0 * Os_TE_693298 Os_TE_693298 Chr11 21706520 21706519 - SZ-9LTR 965 0.0003 (1/2981) 0 * Os_TE_693299 Os_TE_693286 Chr11 21699019 21699020 - RETROSAT3_LTR 11537 0.0007 (2/2948) 0 * * Os_TE_693284 Chr11 21698456 21696525 - TNR3 1536 0.8141 (2418/2970) 1 Intact Os_TE_693281 Os_TE_693281 Chr11 21696525 21698456 + TNR3 1536 0.8210 (2444/2977) 1 Intact Os_TE_693284 Os_TE_693279 Chr11 21695231 21695232 - ORSgTETNOOT00553 140 0.2026 (599/2957) 0 * Os_TE_693278 Os_TE_693278 Chr11 21695229 21695228 - ORSgTEMT00501447 126 0.2045 (604/2953) 0 * Os_TE_693279 Os_TE_693267 Chr11 21686953 21686954 + NDNA1TNA_OS 334 0.4524 (1303/2880) 0 * * Os_TE_693266 Chr11 21686886 21686887 + ORSgTETNOOT01930 140 0.0004 (1/2518) 0 * * Os_TE_693259 Chr11 21686163 21686406 + ORSgTEMT01400032 215 0.6609 (1707/2583) 1 Intact * Os_TE_693258 Chr11 21685980 21685981 + MDR2 6967 0.0522 (111/2127) 0 * Os_TE_693257 Os_TE_693257 Chr11 21685973 21685972 - MDR2 6967 0.0420 (118/2811) 0 * Os_TE_693258 Os_TE_693256 Chr11 21685745 21685746 + MDR2 6967 0.0663 (191/2879) 0 * * Os_TE_693254 Chr11 21685216 21685217 + TESS 244 0.3802 (1041/2738) 0 * * Os_TE_693252 Chr11 21684329 21684330 - TRUNCATOR2_LTR 2904 0.0006 (1/1775) 0 * * Os_TE_693249 Chr11 21683453 21683452 - COPI2_LTR 4733 0.0006 (1/1806) 0 * * Os_TE_693247 Chr11 21682034 21682035 + RPO_OS 1983 0.1050 (218/2077) 0 * * Os_TE_693242 Chr11 21681691 21681902 + ORSgTEMT01601122 212 0.8479 (1382/1630) 1 Intact * Os_TE_693241 Chr11 21681449 21681450 - RETROFIT_LTR 4866 0.0287 (50/1745) 0 * Os_TE_693240 Os_TE_693240 Chr11 21681446 21681445 + ORSiTERTOOT00033 4884 0.0269 (47/1746) 0 * Os_TE_693241 Os_TE_693227 Chr11 21676677 21680907 - TRUNCATOR2_LTR 2904 0.8172 (1408/1723) 1 Intact * Os_TE_693226 Chr11 21676628 21676629 + GYPSY1-LTR_OS 8900 0.2009 (350/1742) 0 * Os_TE_693225 Os_TE_693225 Chr11 21676624 21676623 - GYPSY1-LTR_OS 8900 0.1912 (330/1726) 0 * Os_TE_693226 Os_TE_693221 Chr11 21674976 21674977 - ORSgTEMT00100865 348 0.1927 (337/1749) 0 * * Os_TE_693213 Chr11 21671523 21670211 - OSTE33 1012 0.8160 (1397/1712) 1 Intact Os_TE_693212 Os_TE_693212 Chr11 21670206 21671517 - OSTE33 1012 0.8078 (1404/1738) 1 Intact Os_TE_693213 Os_TE_693210 Chr11 21669591 21669323 - STOWAWAY11_OS 292 0.8090 (1423/1759) 1 Intact * Os_TE_693209 Chr11 21669316 21669317 + ORSgTEMT01701861 113 0.0012 (2/1725) 0 * * Os_TE_693207 Chr11 21669276 21669275 - COPIA2-LTR_OS 6433 0.1814 (310/1709) 0 * * Os_TE_693206 Chr11 21669088 21669087 - INDITTO 263 0.0469 (82/1750) 0 * * Os_TE_693205 Chr11 21669081 21669082 - ORSgTETNOOT01930 140 0.1796 (307/1709) 0 * * Os_TE_693202 Chr11 21666267 21666266 - COPI2_LTR 4733 0.0006 (1/1771) 0 * * Os_TE_693153 Chr11 21652327 21652328 + TRUNCATOR 2918 0.0016 (2/1225) 0 * * Os_TE_693109 Chr11 21636567 21636568 - ORSiTERT00200154 9386 0.0031 (2/643) 0 * * Os_TE_693106 Chr11 21636228 21636227 + COPIA1-LTR_OS 9292 0.0060 (12/2005) 0 * * Os_TE_693051 Chr11 21608623 21608624 + RIREX_LTR 8828 0.0005 (1/1958) 0 * Os_TE_693050 Os_TE_693050 Chr11 21608619 21608618 - RIREX_LTR 8828 0.0005 (1/1961) 0 * Os_TE_693051 Os_TE_693049 Chr11 21608378 21608379 - COPIA2-LTR_OS 6433 0.0010 (2/1976) 0 * Os_TE_693048 Os_TE_693048 Chr11 21608374 21608373 + COPIA2-LTR_OS 6433 0.0010 (2/1974) 0 * Os_TE_693049 Os_TE_693047 Chr11 21608325 21608324 - OSMAR1 5265 0.0051 (10/1957) 0 * Os_TE_693046 Os_TE_693046 Chr11 21608322 21608323 + OSMAR1 5265 0.0041 (8/1939) 0 * Os_TE_693047 Os_TE_693001 Chr11 21580433 21580432 + RIREX_LTR 8828 0.0012 (3/2575) 0 * * Os_TE_692953 Chr11 21560277 21560278 - SZ-48LTR 3632 0.0596 (101/1695) 0 * * Os_TE_692945 Chr11 21559000 21559001 + COPIA2-LTR_OS 6433 0.0006 (1/1689) 0 * Os_TE_692944 Os_TE_692944 Chr11 21558996 21558995 - COPIA2-LTR_OS 6433 0.0006 (1/1747) 0 * Os_TE_692945 Os_TE_692942 Chr11 21558808 21558809 - RETROSAT4_LTR 13504 0.0071 (14/1966) 0 * * Os_TE_692934 Chr11 21556720 21556719 + ORSgTETNOOT01055 267 0.0006 (1/1759) 0 * * Os_TE_692912 Chr11 21545063 21545064 - SC-3_LTR 5748 0.0007 (2/2859) 0 * Os_TE_692911 Os_TE_692911 Chr11 21545059 21545058 + ORSiTERTOOT00296 5553 0.0007 (2/2858) 0 * Os_TE_692912 Os_TE_692901 Chr11 21542488 21542489 + COPIA2-LTR_OS 6433 0.0039 (11/2839) 0 * * Os_TE_692899 Chr11 21542280 21542281 - RIRE2_LTR 11306 0.0094 (24/2565) 0 * * Os_TE_692861 Chr11 21530365 21530364 + MuDR3_OS 8604 0.0011 (2/1748) 0 * * Os_TE_692858 Chr11 21528866 21527915 - CACTA-F 1118 0.6629 (1758/2652) 1 Intact * Os_TE_692848 Chr11 21523092 21523091 - RETRO1_LTR 8314 0.0031 (9/2909) 0 * * Os_TE_692847 Chr11 21522939 21522940 + CLOUD-6 508 0.0468 (135/2887) 0 * Os_TE_692846 Os_TE_692846 Chr11 21522931 21522930 - CLOUD-6 508 0.0435 (124/2851) 0 * Os_TE_692847 Os_TE_692845 Chr11 21522689 21522690 - ORSgTETNOOT02000 263 0.4422 (1307/2956) 0 * Os_TE_692844 Os_TE_692844 Chr11 21522687 21522686 - INDITTO 263 0.4398 (1294/2942) 0 * Os_TE_692845 Os_TE_692840 Chr11 21521916 21521917 + INDITTO 263 0.0003 (1/2863) 0 * Os_TE_692839 Os_TE_692839 Chr11 21521914 21521913 - INDITTO 263 0.0003 (1/2864) 0 * Os_TE_692840 Os_TE_692816 Chr11 21509758 21509757 + SEVERIN-2 1952 0.0007 (2/2981) 0 * * Os_TE_692811 Chr11 21504915 21504916 + SC-8_LTR 4951 0.0003 (1/2989) 0 * Os_TE_692810 Os_TE_692810 Chr11 21504911 21504910 - SC-8_LTR 4951 0.0003 (1/2993) 0 * Os_TE_692811 Os_TE_692801 Chr11 21498081 21498082 - RIREX_LTR 8828 0.0033 (6/1800) 0 * Os_TE_692800 Os_TE_692800 Chr11 21498077 21498076 + RIREX_LTR 8828 0.0023 (7/2996) 0 * Os_TE_692801 Os_TE_692797 Chr11 21494887 21494886 - ORSgTEMT01600750 238 0.3492 (927/2655) 0 * * Os_TE_692795 Chr11 21494731 21494732 - RIRE2_LTR 11306 0.0007 (2/2936) 0 * Os_TE_692794 Os_TE_692794 Chr11 21494727 21494726 - ORSgTERT00201216 11284 0.0007 (2/2798) 0 * Os_TE_692795 Os_TE_692793 Chr11 21494133 21494132 + TRUNCATOR 2918 0.0108 (30/2768) 0 * Os_TE_692792 Os_TE_692792 Chr11 21494132 21494133 - TRUNCATOR 2918 0.0146 (25/1711) 0 * Os_TE_692793 Os_TE_692786 Chr11 21490643 21490642 - COWARD-3 221 0.4234 (1251/2955) 0 * * Os_TE_692768 Chr11 21474923 21474922 + ORSgTEMT00901844 250 0.3888 (1070/2752) 0 * * Os_TE_692763 Chr11 21474565 21474564 - RETROSAT3_LTR 11537 0.0667 (187/2805) 0 * * Os_TE_692762 Chr11 21473906 21473647 - FOCUS 257 0.5936 (1738/2928) 1 Intact * Os_TE_692756 Chr11 21471272 21471273 - DNAUN1_OS 408 0.3923 (1100/2804) 0 * * Os_TE_692755 Chr11 21470499 21470500 - RIRE2_LTR 11306 0.0007 (2/2825) 0 * Os_TE_692754 Os_TE_692754 Chr11 21470495 21470494 + RIRE2_LTR 11306 0.0007 (2/2824) 0 * Os_TE_692755 Os_TE_692752 Chr11 21468956 21468671 + YOUREN 286 0.6430 (1821/2832) 1 Intact Os_TE_692746 Os_TE_692746 Chr11 21468671 21468956 - YOUREN 286 0.6411 (1813/2828) 1 Intact Os_TE_692752 Os_TE_692739 Chr11 21465035 21465034 + TRUNCATOR 2918 0.0807 (221/2740) 0 * * Os_TE_692722 Chr11 21459259 21459260 - ORSgTEMT00901071 248 0.0375 (105/2799) 0 * * Os_TE_692718 Chr11 21459186 21459187 - MPING 430 0.0305 (21/688) 0 * * Os_TE_692675 Chr11 21443060 21443059 + DS-RICE3N 525 0.0004 (1/2628) 0 * * Os_TE_692674 Chr11 21443029 21443028 - TYPEM 227 0.1267 (345/2724) 0 * Os_TE_692673 Os_TE_692673 Chr11 21443024 21443025 - ORSgTEMT02400179 221 0.1359 (362/2664) 0 * Os_TE_692674 Os_TE_692669 Chr11 21441322 21441321 - RIRE2_LTR 11306 0.0046 (13/2836) 0 * * Os_TE_692668 Chr11 21441208 21420838 + ORSgTERTOOT00009 12852 0.2398 (675/2815) 1 Intact Os_TE_692657 Os_TE_692657 Chr11 21420838 21441208 - RETRO2_LTR 12874 0.2433 (687/2824) 1 Intact Os_TE_692668 Os_TE_692656 Chr11 21419128 21419129 - ORSgTERT00201216 11284 0.0014 (4/2813) 0 * * Os_TE_692651 Chr11 21416832 21416833 + SEVERIN-2 1952 0.0007 (2/2995) 0 * * Os_TE_692647 Chr11 21412449 21412448 - ORSgTEMT00100124 360 0.0669 (165/2465) 0 * * Os_TE_692633 Chr11 21409990 21409989 + ENSPM4_OS 11610 0.0472 (134/2839) 0 * * Os_TE_692615 Chr11 21403522 21403521 - NDNA1TNA_OS 334 0.0047 (14/2988) 0 * * Os_TE_692599 Chr11 21402272 21402273 - ORSgTETNOOT00754 253 0.0351 (105/2992) 0 * Os_TE_692598 Os_TE_692598 Chr11 21402270 21402269 + ORSgTETNOOT01834 251 0.0351 (105/2992) 0 * Os_TE_692599 Os_TE_692596 Chr11 21401842 21401841 - ORSgTEMT00901345 248 0.2470 (720/2915) 0 * * Os_TE_692589 Chr11 21400761 21401223 + ORSgTEMT04600039 283 0.8304 (2198/2647) 1 Intact * Os_TE_692586 Chr11 21400259 21400260 - RETRO1_LTR 8314 0.0049 (13/2654) 0 * * Os_TE_692564 Chr11 21395636 21395637 - EnSpm-13_OS 11171 0.0098 (29/2972) 0 * * Os_TE_692562 Chr11 21394496 21394495 + TYPEH 309 0.0007 (2/2927) 0 * * Os_TE_692559 Chr11 21393804 21393805 + ENSPM4_OS 11610 0.0049 (14/2846) 0 * * Os_TE_692556 Chr11 21393530 21393323 + ORSgTEMT01601122 212 0.7544 (2233/2960) 1 Intact Os_TE_692554 Os_TE_692554 Chr11 21393295 21393530 + ORSgTEMT01601122 212 0.7468 (2085/2792) 1 Intact Os_TE_692556 Os_TE_692550 Chr11 21392502 21392501 - ORSgTEMT00502258 148 0.0007 (2/2949) 0 * * Os_TE_692549 Chr11 21392470 21392469 - STOWAWAY51_OS 246 0.0003 (1/2966) 0 * * Os_TE_692546 Chr11 21390130 21390131 - MuDR4_OS 7610 0.0010 (3/2925) 0 * Os_TE_692545 Os_TE_692545 Chr11 21390122 21390121 + MuDR4_OS 7610 0.0014 (4/2926) 0 * Os_TE_692546 Os_TE_692515 Chr11 21384627 21384628 - ORSgTEMT00501447 126 0.0007 (2/2913) 0 * Os_TE_692514 Os_TE_692514 Chr11 21384625 21384624 - ORSgTEMT00500675 140 0.0007 (2/2922) 0 * Os_TE_692515 Os_TE_692505 Chr11 21384003 21384002 + TRUNCATOR 2918 0.0058 (17/2945) 0 * Os_TE_692504 Os_TE_692504 Chr11 21384002 21384003 - TRUNCATOR 2918 0.0059 (17/2882) 0 * Os_TE_692505 Os_TE_692490 Chr11 21374698 21374699 + RIRE3_LTR 12054 0.0017 (4/2362) 0 * Os_TE_692489 Os_TE_692489 Chr11 21374694 21374693 - RIRE3_LTR 12054 0.0038 (9/2383) 0 * Os_TE_692490 Os_TE_692455 Chr11 21367330 21355902 + CACTA-B 1103 0.7367 (2076/2818) 1 Intact * Os_TE_692406 Chr11 21354021 21354022 - CPSC4A_LTR 5182 0.0357 (104/2915) 0 * * Os_TE_692365 Chr11 21337697 21337696 - COPIA2-LTR_OS 6433 0.0049 (14/2880) 0 * * Os_TE_692363 Chr11 21335754 21335755 + ENSPM5_OS 9581 0.0115 (33/2875) 0 * Os_TE_692362 Os_TE_692362 Chr11 21335752 21335751 - ENSPM6_OS 9815 0.0094 (27/2871) 0 * Os_TE_692363 Os_TE_692355 Chr11 21334725 21334724 - STOWAWAY11_OS 292 0.0004 (1/2844) 0 * * Os_TE_692251 Chr11 21301050 21301051 - ORSiTERTOOT00363 4650 0.0031 (9/2906) 0 * * Os_TE_692249 Chr11 21298349 21298350 + SZ-55_LTR 10318 0.0433 (126/2910) 0 * Os_TE_692248 Os_TE_692248 Chr11 21298345 21298344 - SZ-55_LTR 10318 0.0416 (121/2910) 0 * Os_TE_692249 Os_TE_692245 Chr11 21297773 21297772 - ORSiTERTOOT00367 5639 0.0107 (31/2900) 0 * * Os_TE_692243 Chr11 21296505 21296506 + ORSiTERTOOT00226 792 0.0019 (4/2074) 0 * Os_TE_692242 Os_TE_692242 Chr11 21296501 21296500 - SZ-22_LTR 4403 0.0014 (4/2822) 0 * Os_TE_692243 Os_TE_692241 Chr11 21296175 21292243 + RETROSAT4_LTR 13504 0.3357 (956/2848) 1 Solo_LTR Os_TE_692237 Os_TE_692237 Chr11 21292244 21296177 - RETROSAT4_LTR 13504 0.3354 (973/2901) 1 Solo_LTR Os_TE_692241 Os_TE_692232 Chr11 21290860 21290859 - OSLINE1-2 7128 0.0544 (65/1195) 0 * * Os_TE_692228 Chr11 21289547 21289548 + NDNA1TNA_OS 334 0.0092 (11/1191) 0 * * Os_TE_692208 Chr11 21280744 21281079 + OLO24 345 0.7594 (2071/2727) 1 Intact * Os_TE_692207 Chr11 21280635 21280323 + ORSgTEMT00101588 319 0.7410 (2046/2761) 1 Intact * Os_TE_692201 Chr11 21280256 21280255 - ORSgTEMT00100312 345 0.2495 (664/2661) 0 * * Os_TE_692197 Chr11 21280026 21280027 + MERMITE18C 1473 0.2738 (721/2633) 0 * * Os_TE_692194 Chr11 21279783 21279784 - ORSiTETNOOT00216 3569 0.0008 (2/2443) -1 * Os_TE_692193 Os_TE_692193 Chr11 21279776 21279775 + TWIFBIG 3567 0.0014 (3/2137) -1 * Os_TE_692194 Os_TE_692188 Chr11 21279176 21279177 - MUDR_N7_OS 1283 0.0004 (1/2666) 0 * * Os_TE_692183 Chr11 21278751 21278902 + ORSgTEMT00501222 152 0.8826 (2113/2394) 1 Intact * Os_TE_692156 Chr11 21274626 21274625 + KRISPIE 956 0.0010 (3/2865) 0 * Os_TE_692155 Os_TE_692155 Chr11 21274625 21274626 - KRISPIE 956 0.0010 (3/2865) 0 * Os_TE_692156 Os_TE_692153 Chr11 21274223 21274224 + SPMLIKE 10989 0.0092 (26/2814) 0 * Os_TE_692152 Os_TE_692152 Chr11 21274221 21274220 - ORSgTETN00200001 10994 0.0096 (27/2822) 0 * Os_TE_692153 Os_TE_692143 Chr11 21272000 21271999 + TYPEU4 402 0.0022 (2/915) -1 * * Os_TE_692135 Chr11 21266645 21266646 + ORSgTEMT01601571 232 0.0009 (2/2248) 0 * * Os_TE_692131 Chr11 21265035 21265036 + RETROFIT5_LTR 4785 0.2090 (450/2153) 0 * Os_TE_692130 Os_TE_692130 Chr11 21265031 21265030 - RETROFIT5_LTR 4785 0.2069 (445/2151) 0 * Os_TE_692131 Os_TE_692125 Chr11 21262051 21261791 - STOWAWAY13_OS 251 0.5038 (1055/2094) 1 Intact * Os_TE_692120 Chr11 21261064 21261063 - TELIA 141 0.0011 (1/947) 0 * * Os_TE_692115 Chr11 21260052 21260053 - MPING 430 0.0010 (2/2023) 0 * Os_TE_692114 Os_TE_692114 Chr11 21260050 21260049 + MPING 430 0.0005 (1/2124) 0 * Os_TE_692115 Os_TE_692108 Chr11 21258851 21258852 + RIRE2_LTR 11306 0.0739 (156/2111) 0 * * Os_TE_692091 Chr11 21256862 21256863 + BAJIELTR 4500 0.7706 (2271/2947) 0 * * Os_TE_692090 Chr11 21256822 21256823 + TNR12 528 0.0007 (2/2745) 0 * Os_TE_692089 Os_TE_692089 Chr11 21256815 21256814 - TNR12 528 0.0007 (2/2673) 0 * Os_TE_692090 Os_TE_692072 Chr11 21248931 21248932 + COPIA2-LTR_OS 6433 0.0204 (60/2936) 0 * * Os_TE_692064 Chr11 21243371 21243372 + SEVERIN-2 1952 0.0017 (5/2941) 0 * * Os_TE_692063 Chr11 21242961 21242960 + TWIFB1 3737 0.0003 (1/2928) 0 * * Os_TE_692058 Chr11 21241486 21241487 - ORSiTERT00100062 5674 0.0010 (3/2949) 0 * Os_TE_692057 Os_TE_692057 Chr11 21241482 21241481 + OSTONOR1_LTR 6440 0.0010 (3/2907) 0 * Os_TE_692058 Os_TE_692049 Chr11 21240248 21240247 + SEVERIN-2 1952 0.0007 (2/2939) 0 * * Os_TE_692037 Chr11 21232725 21223782 - ORSiTERTOOT00329 5144 0.4042 (1186/2934) 1 Intact Os_TE_692032 Os_TE_692032 Chr11 21223782 21232725 + ORSiTERTOOT00329 5144 0.3978 (1169/2939) 1 Intact Os_TE_692037 Os_TE_692029 Chr11 21221796 21221797 + RETRO1_LTR 8314 0.0003 (1/2861) 0 * * Os_TE_692026 Chr11 21221090 21221089 - COPIA2-LTR_OS 6433 0.0003 (1/2952) 0 * * Os_TE_691993 Chr11 21215868 21215869 + SC-1_LTR 6888 0.0007 (2/2970) 0 * * Os_TE_691953 Chr11 21200045 21200044 - ORSgTEMT00901312 242 0.0071 (21/2961) 0 * * Os_TE_691942 Chr11 21198697 21198698 - COPIA2-LTR_OS 6433 0.0010 (3/2966) 0 * Os_TE_691941 Os_TE_691941 Chr11 21198693 21198692 + COPIA2-LTR_OS 6433 0.0010 (3/2970) 0 * Os_TE_691942 Os_TE_691938 Chr11 21197866 21197867 - ORSgTEMT01600747 238 0.0027 (8/2981) 0 * * Os_TE_691917 Chr11 21183290 21183291 + RETRO2_LTR 12874 0.0003 (1/2995) 0 * Os_TE_691916 Os_TE_691916 Chr11 21183286 21183285 - RETRO2_LTR 12874 0.0003 (1/2994) 0 * Os_TE_691917 Os_TE_691909 Chr11 21178480 21178235 - ORSgTEMT00900099 250 0.6165 (1847/2996) 1 Intact * Os_TE_691903 Chr11 21177859 21177860 + SPMLIKE 10989 0.0010 (3/2996) 0 * Os_TE_691902 Os_TE_691902 Chr11 21177857 21177856 - ORSgTETN00200001 10994 0.0010 (3/2992) 0 * Os_TE_691903 Os_TE_691901 Chr11 21176599 21176600 + SEVERIN-2 1952 0.1817 (535/2945) 0 * * Os_TE_691897 Chr11 21175607 21175280 + ORSgTEMT00101583 342 0.8662 (2532/2923) 1 Intact * Os_TE_691877 Chr11 21171417 21171418 + RETROSAT4_LTR 13504 0.1136 (289/2543) 0 * * Os_TE_691874 Chr11 21171081 21167352 - SZ-35LTR 3853 0.5364 (1371/2556) 1 Intact * Os_TE_691867 Chr11 21167216 21167217 + ORSgTEMT01602413 239 0.1341 (387/2885) 0 * * Os_TE_691860 Chr11 21165940 21165939 + ORSiOTOT00000037 220 0.0267 (68/2545) 0 * * Os_TE_691854 Chr11 21164473 21164474 - COPIA2-LTR_OS 6433 0.0004 (1/2608) 0 * * Os_TE_691850 Chr11 21162680 21162681 - BAJIELTR 4500 0.2066 (504/2440) 0 * * Os_TE_691827 Chr11 21156420 21156421 + OLO24 345 0.0348 (91/2614) 0 * * Os_TE_691826 Chr11 21156236 21156237 - ORSgTEMT00502257 142 0.0347 (91/2625) 0 * * Os_TE_691823 Chr11 21155095 21151691 - TRUNCATOR2_LTR 2904 0.4661 (1211/2598) 1 Intact Os_TE_691821 Os_TE_691821 Chr11 21151691 21155091 - TRUNCATOR2_LTR 2904 0.4456 (1135/2547) -1 Intact Os_TE_691823 Os_TE_691812 Chr11 21150006 21150007 - TRUNCATOR2_LTR 2904 0.0012 (3/2588) 0 * Os_TE_691811 Os_TE_691811 Chr11 21150002 21150001 + ORSiCMCM00100019 2717 0.0012 (3/2593) 0 * Os_TE_691812 Os_TE_691806 Chr11 21147830 21147829 - ORSiTERT00100062 5674 0.0004 (1/2605) 0 * * Os_TE_691801 Chr11 21146196 21146197 - ORSgTEMT00100242 351 0.2130 (558/2620) 0 * * Os_TE_691800 Chr11 21145910 21145911 + RIREX_LTR 8828 0.0004 (1/2629) 0 * * Os_TE_691799 Chr11 21145698 21145697 + ENSPM4_OS 11610 0.0004 (1/2629) 0 * * Os_TE_691736 Chr11 21115083 21115082 - ORSgTERT00200919 424 0.0006 (1/1780) 0 * * Os_TE_691729 Chr11 21113198 21113197 - ORSgTETN00200001 10994 0.0003 (1/2960) 0 * * Os_TE_691727 Chr11 21112961 21112962 + ORSgTETNOOT00908 242 0.0014 (4/2844) 0 * * Os_TE_691725 Chr11 21112656 21104874 - ORSgTETN00200001 10994 0.4604 (1157/2513) 1 Intact Os_TE_691717 Os_TE_691717 Chr11 21104871 21112656 + CACTA-B 1103 0.4172 (1234/2958) 1 Intact Os_TE_691725 Os_TE_691706 Chr11 21103114 21103113 + NDNA1TNA_OS 334 0.1516 (391/2580) 0 * * Os_TE_691700 Chr11 21101554 21101553 + ORSgTEMT01602051 240 0.0121 (27/2227) 0 * * Os_TE_691690 Chr11 21099994 21099995 - INDITTO 263 0.0326 (67/2058) 0 * * Os_TE_691644 Chr11 21085956 21085957 - ORSgTETN00200001 10994 0.0202 (47/2327) 0 * Os_TE_691643 Os_TE_691643 Chr11 21085954 21085953 + SPMLIKE 10989 0.0238 (55/2308) 0 * Os_TE_691644 Os_TE_691642 Chr11 21085901 21085900 + ORSgTEMT00900230 250 0.0030 (7/2323) 0 * * Os_TE_691636 Chr11 21083679 21083678 + ORSgTETNOOT00032 218 0.0175 (18/1030) 0 * * Os_TE_691629 Chr11 21081155 21081156 - COPIA2-LTR_OS 6433 0.0048 (11/2315) 0 * Os_TE_691628 Os_TE_691628 Chr11 21081151 21081150 + COPIA2-LTR_OS 6433 0.0038 (11/2901) 0 * Os_TE_691629 Os_TE_691627 Chr11 21080712 21080711 + ORSiTERT00200076 3543 0.8882 (2607/2935) 0 * * Os_TE_691626 Chr11 21080505 21080504 + ORSgTETN00200005 1121 0.0004 (1/2312) 0 * Os_TE_691625 Os_TE_691625 Chr11 21080504 21080505 + CACTA-H 1152 0.0004 (1/2314) 0 * Os_TE_691626 Os_TE_691611 Chr11 21068306 21068307 - COPIA2-LTR_OS 6433 0.0004 (1/2310) 0 * Os_TE_691610 Os_TE_691610 Chr11 21068302 21068301 + COPIA2-LTR_OS 6433 0.0004 (1/2303) 0 * Os_TE_691611 Os_TE_691608 Chr11 21067824 21067823 - ORSgTERT00201216 11284 0.4151 (926/2231) 0 * * Os_TE_691602 Chr11 21064740 21064739 - ORSgTEMT01602413 239 0.3792 (841/2218) 0 * * Os_TE_691585 Chr11 21059416 21059417 + OSTE18 129 0.0257 (56/2183) 0 * * Os_TE_691581 Chr11 21058055 21057817 - TREP215 239 0.2658 (638/2400) 1 Intact * Os_TE_691576 Chr11 21056991 21056990 + ID-4 284 0.3022 (873/2889) 0 * * Os_TE_691568 Chr11 21056356 21056357 + MERMITEB 1610 0.0010 (3/2957) 0 * * Os_TE_691567 Chr11 21056209 21056210 + TWIFBIG 3567 0.0090 (27/2990) 0 * Os_TE_691566 Os_TE_691566 Chr11 21056202 21056201 - ORSiTETNOOT00216 3569 0.0077 (23/2990) 0 * Os_TE_691567 Os_TE_691558 Chr11 21050776 21050777 - ORSgTEMT02300007 256 0.0010 (3/2986) 0 * * Os_TE_691556 Chr11 21050321 21050066 + ORSgTETNOOT01791 245 0.4723 (1387/2937) 1 Intact Os_TE_691553 Os_TE_691553 Chr11 21050053 21050324 + STOWAWAY17_OS 259 0.4659 (1395/2994) 1 Intact Os_TE_691556 Os_TE_691552 Chr11 21050025 21050024 - MIDWAY 985 0.0018 (5/2794) 0 * * Os_TE_691548 Chr11 21049434 21049435 - STOWAWAY41_OS 264 0.0028 (8/2872) 0 * * Os_TE_691547 Chr11 21048809 21048810 - MDR2 6967 0.0175 (52/2975) 0 * * Os_TE_691545 Chr11 21048651 21048652 - SZ-55_LTR 10318 0.0080 (24/2993) 0 * Os_TE_691544 Os_TE_691544 Chr11 21048647 21048646 + SZ-55_LTR 10318 0.0080 (24/2987) 0 * Os_TE_691545 Os_TE_691532 Chr11 21044906 21044907 + SZ-30_LTR 6377 0.0003 (1/2971) 0 * * Os_TE_691530 Chr11 21044179 21044180 - LINE-6_OS 4886 0.0030 (9/2989) 0 * * Os_TE_691522 Chr11 21039859 21039858 + ORSiTERT00200145 12238 0.0060 (17/2829) 0 * * Os_TE_691514 Chr11 21038885 21038884 - ORSgTEMT01700507 154 0.0038 (8/2093) 0 * Os_TE_691513 Os_TE_691513 Chr11 21038882 21038883 - ORSgTEMT01700216 124 0.0021 (6/2830) 0 * Os_TE_691514 Os_TE_691512 Chr11 21037843 21037844 + SZ-55_LTR 10318 0.0434 (88/2029) 0 * Os_TE_691511 Os_TE_691511 Chr11 21037839 21037838 - SZ-55_LTR 10318 0.0458 (88/1922) 0 * Os_TE_691512 Os_TE_691507 Chr11 21036238 21036239 - SC-8_LTR 4951 0.0004 (1/2235) 0 * Os_TE_691506 Os_TE_691506 Chr11 21036234 21036233 + SC-8_LTR 4951 0.0004 (1/2229) 0 * Os_TE_691507 Os_TE_691505 Chr11 21036101 21036102 + RIRE2_LTR 11306 0.0005 (1/2222) 0 * Os_TE_691504 Os_TE_691504 Chr11 21036097 21036096 - RIRE2_LTR 11306 0.0005 (1/2216) 0 * Os_TE_691505 Os_TE_691501 Chr11 21030348 21030349 - CACTA-B 1103 0.0018 (3/1673) 0 * * Os_TE_691500 Chr11 21030140 21030141 - RPO_OS 1983 0.0345 (55/1593) 0 * * Os_TE_691494 Chr11 21029365 21029468 + TREP219 104 0.7830 (1530/1954) 1 Intact * Os_TE_691492 Chr11 21029008 21029007 + WUWU 113 0.0685 (135/1970) 0 * * Os_TE_691490 Chr11 21028838 21028837 - STOWAWAY46_OS 154 0.0021 (4/1892) 0 * * Os_TE_691476 Chr11 21023181 21023420 + STOWAWAY44_OS 240 0.8949 (1473/1646) 1 Intact * Os_TE_691468 Chr11 21019613 21019614 - COPIA2-LTR_OS 6433 0.0012 (2/1710) 0 * * Os_TE_691466 Chr11 21018796 21018797 + RIREX_LTR 8828 0.0046 (8/1725) 0 * Os_TE_691465 Os_TE_691465 Chr11 21018792 21018791 - RIREX_LTR 8828 0.0047 (8/1720) 0 * Os_TE_691466 Os_TE_691440 Chr11 21009239 21009240 + TRUNCATOR 2918 0.0061 (7/1142) 0 * * Os_TE_691435 Chr11 21008089 21008090 - COPIA1-LTR_OS 9292 0.0013 (3/2287) 0 * * Os_TE_691432 Chr11 21006582 21006583 - SZ-67LTR 1540 0.0231 (54/2339) 0 * * Os_TE_691420 Chr11 21000918 21000919 - RIRE3A_LTR 10580 0.0004 (1/2449) 0 * * Os_TE_691394 Chr11 20987124 20987125 - MUDRN3_OS 903 0.0024 (7/2877) 0 * * Os_TE_691389 Chr11 20986093 20986092 + MUDRN5_OS 374 0.0003 (1/2884) 0 * * Os_TE_691375 Chr11 20974494 20974495 + ORSgTEMT00101674 340 0.0830 (240/2892) 0 * * Os_TE_691364 Chr11 20972181 20972182 - RIREX_LTR 8828 0.0004 (1/2745) 0 * Os_TE_691363 Os_TE_691363 Chr11 20972177 20972176 + RIREX_LTR 8828 0.0004 (1/2751) 0 * Os_TE_691364 Os_TE_691304 Chr11 20958760 20958759 - MPING 430 0.0003 (1/2933) 0 * * Os_TE_691293 Chr11 20954300 20954301 - SC-8_LTR 4951 0.0014 (4/2925) 0 * Os_TE_691292 Os_TE_691292 Chr11 20954296 20954295 + SC-8_LTR 4951 0.0014 (4/2939) 0 * Os_TE_691293 Os_TE_691286 Chr11 20953079 20953078 + COPI2_LTR 4733 0.0003 (1/2942) 0 * * Os_TE_691266 Chr11 20948529 20948530 - RIRE3_LTR 12054 0.0076 (22/2902) 0 * * Os_TE_691257 Chr11 20947167 20947168 + SZ-4_LTR 5991 0.0007 (2/2935) 0 * * Os_TE_691244 Chr11 20944974 20944973 - EnSpm-13_OS 11171 0.0008 (2/2631) 0 * * Os_TE_691241 Chr11 20943734 20943733 + CACTA-D 1038 0.0033 (9/2766) 0 * Os_TE_691240 Os_TE_691240 Chr11 20943733 20943734 - CACTA-M 1129 0.0044 (12/2748) 0 * Os_TE_691241 Os_TE_691236 Chr11 20942177 20942178 - ORSgTETNOOT00053 263 0.1055 (196/1858) 0 * * Os_TE_691235 Chr11 20942118 20942117 + ORSgTEMT01601591 242 0.0039 (7/1812) 0 * * Os_TE_691232 Chr11 20940976 20940977 + SZ-36LTR 5825 0.3836 (1121/2922) 0 * * Os_TE_691230 Chr11 20940912 20940913 + RIREX_LTR 8828 0.0041 (12/2926) 0 * Os_TE_691229 Os_TE_691229 Chr11 20940908 20940907 - RIREX_LTR 8828 0.0041 (12/2924) 0 * Os_TE_691230 Os_TE_691142 Chr11 20909524 20909525 + SPMLIKE 10989 0.0003 (1/2968) 0 * Os_TE_691141 Os_TE_691141 Chr11 20909522 20909521 - ORSgTETN00200001 10994 0.0003 (1/2941) 0 * Os_TE_691142 Os_TE_691115 Chr11 20895087 20895088 + WUWU 113 0.4038 (1125/2786) 0 * * Os_TE_691114 Chr11 20894846 20894847 - SZ-9LTR 965 0.0025 (7/2823) 0 * Os_TE_691113 Os_TE_691113 Chr11 20894842 20894841 + SZ-9LTR 965 0.0029 (8/2789) 0 * Os_TE_691114 Os_TE_691112 Chr11 20893971 20893972 + ORSgTEMT00901485 203 0.0130 (36/2776) 0 * * Os_TE_691111 Chr11 20893925 20893924 + ORSgTEMT00901844 250 0.4133 (1151/2785) 0 * * Os_TE_691109 Chr11 20893535 20893536 - ORSgTEMT00900099 250 0.3441 (962/2796) 0 * * Os_TE_691103 Chr11 20887970 20893200 - ORSiTERTOOT00333 4719 0.6267 (1852/2955) 1 Intact * Os_TE_691100 Chr11 20886202 20886203 - TELIA 141 0.0003 (1/2899) 0 * Os_TE_691099 Os_TE_691099 Chr11 20886194 20886193 + TELIA 141 0.0003 (1/2894) 0 * Os_TE_691100 Os_TE_691088 Chr11 20884973 20884114 - SETARIA1 1293 0.3067 (903/2944) 1 Intact Os_TE_691087 Os_TE_691087 Chr11 20884114 20884973 + SETARIA1 1293 0.3007 (823/2737) 1 Intact Os_TE_691088 Os_TE_691086 Chr11 20883891 20883892 - MIDWAY 985 0.3764 (1045/2776) 0 * * Os_TE_691084 Chr11 20883763 20883764 + MERMITEB 1610 0.0372 (53/1424) 0 * * Os_TE_691067 Chr11 20875104 20875105 + AMYLTP 383 0.0028 (8/2882) 0 * Os_TE_691066 Os_TE_691066 Chr11 20875096 20875095 - AMYLTP 383 0.0028 (8/2887) 0 * Os_TE_691067 Os_TE_691059 Chr11 20867874 20867875 - NDNA1TNA_OS 334 0.0003 (1/2911) 0 * Os_TE_691058 Os_TE_691058 Chr11 20867872 20867871 + NDNA1TNA_OS 334 0.0003 (1/2910) 0 * Os_TE_691059 Os_TE_691053 Chr11 20867405 20867623 + STOWAWAY51_OS 246 0.6363 (1641/2579) 1 Intact * Os_TE_691047 Chr11 20866000 20866001 - OSTE33 1012 0.1521 (444/2919) 0 * Os_TE_691046 Os_TE_691046 Chr11 20865990 20865989 - OSTE33 1012 0.1404 (407/2899) 0 * Os_TE_691047 Os_TE_690987 Chr11 20837860 20837861 + COPI2_LTR 4733 0.5383 (1552/2883) 0 * Os_TE_690986 Os_TE_690986 Chr11 20837856 20837855 - COPI2_LTR 4733 0.5367 (1542/2873) 0 * Os_TE_690987 Os_TE_690950 Chr11 20822084 20822085 - RIRE3_LTR 12054 0.0028 (8/2903) 0 * * Os_TE_690947 Chr11 20821333 20821332 - RIRE3A_LTR 10580 0.0021 (6/2883) 0 * * Os_TE_690924 Chr11 20813234 20813233 - ORSgTEMT04600010 284 0.0039 (11/2825) 0 * * Os_TE_690885 Chr11 20803548 20803549 - SZ-17_LTR 3387 0.0003 (1/2995) 0 * Os_TE_690884 Os_TE_690884 Chr11 20803544 20803543 + SZ-17_LTR 3387 0.0003 (1/2990) 0 * Os_TE_690885 Os_TE_690856 Chr11 20796626 20785430 + SPMLIKE 10989 0.3263 (958/2936) 1 Intact Os_TE_690854 Os_TE_690854 Chr11 20785430 20796626 - ORSgTETN00200001 10994 0.3143 (912/2902) 1 Intact Os_TE_690856 Os_TE_690813 Chr11 20777237 20774465 - COPIA2-LTR_OS 6433 0.3216 (957/2976) 1 Intact Os_TE_690811 Os_TE_690811 Chr11 20774471 20777237 - ORSgTERT00100363 6446 0.3187 (943/2959) 1 Intact Os_TE_690813 Os_TE_690794 Chr11 20766282 20766281 - COPI2_LTR 4733 0.0003 (1/2983) 0 * * Os_TE_690788 Chr11 20764082 20764083 + MERMITEA 1710 0.0236 (61/2587) 0 * * Os_TE_690777 Chr11 20758379 20758380 + ORSgTEMT00600272 361 0.0150 (45/2991) 0 * Os_TE_690776 Os_TE_690776 Chr11 20758374 20758373 - ORSgTEMT00600478 361 0.0147 (44/2989) 0 * Os_TE_690777 Os_TE_690775 Chr11 20757134 20757135 - SC-8_LTR 4951 0.0003 (1/2968) 0 * Os_TE_690774 Os_TE_690774 Chr11 20757130 20757129 + SC-8_LTR 4951 0.0003 (1/2970) 0 * Os_TE_690775 Os_TE_690758 Chr11 20753984 20753983 - ORSgTEMT01900024 348 0.0223 (66/2961) 0 * * Os_TE_690757 Chr11 20753883 20753884 - ORSiTETNOOT00199 3501 0.0048 (14/2905) 0 * Os_TE_690756 Os_TE_690756 Chr11 20753876 20753875 + TWIF 586 0.0058 (16/2767) 0 * Os_TE_690757 Os_TE_690754 Chr11 20753669 20753668 - ORSgTEMT01602292 239 0.0209 (62/2969) 0 * * Os_TE_690747 Chr11 20752187 20752188 - MuDR-5_OS 17471 0.0004 (1/2758) 0 * * Os_TE_690746 Chr11 20752107 20752108 + TWIF 586 0.0004 (1/2736) 0 * Os_TE_690745 Os_TE_690745 Chr11 20752100 20752099 - ORSiTETNOOT00134 607 0.0007 (2/2738) 0 * Os_TE_690746 Os_TE_690744 Chr11 20752068 20752069 + NDNA1TNA_OS 334 0.0035 (10/2821) 0 * Os_TE_690743 Os_TE_690743 Chr11 20752066 20752065 - NDNA1TNA_OS 334 0.0039 (11/2805) 0 * Os_TE_690744 Os_TE_690741 Chr11 20751691 20751690 - ORSiTERTOOT00396 5939 0.0461 (68/1474) 0 * * Os_TE_690731 Chr11 20742181 20742182 - AMYLTP 383 0.0007 (2/2949) 0 * * Os_TE_690727 Chr11 20741134 20741135 + JOUZHENA 607 0.0150 (43/2858) 0 * * Os_TE_690719 Chr11 20740483 20740484 + COPIA2-LTR_OS 6433 0.0007 (2/2983) 0 * Os_TE_690718 Os_TE_690718 Chr11 20740479 20740478 - COPIA2-LTR_OS 6433 0.0007 (2/2979) 0 * Os_TE_690719 Os_TE_690717 Chr11 20739438 20739437 - COPI2_LTR 4733 0.0003 (1/2984) 0 * Os_TE_690716 Os_TE_690716 Chr11 20739377 20739378 + COPI2_LTR 4733 0.0003 (1/2992) 0 * Os_TE_690717 Os_TE_690708 Chr11 20736723 20736724 + ORSgTEMT01700637 157 0.0229 (68/2972) 0 * * Os_TE_690697 Chr11 20730458 20730459 - ORSgTEMT01602425 234 0.0007 (1/1420) 0 * * Os_TE_690665 Chr11 20721468 20721469 - SZ-37_LTR 12001 0.0003 (1/2984) 0 * * Os_TE_690664 Chr11 20720537 20720538 + RPO_OS 1983 0.0004 (1/2854) 0 * * Os_TE_690655 Chr11 20716020 20716021 + NDNA1TNA_OS 334 0.0007 (2/2988) 0 * * Os_TE_690651 Chr11 20715765 20715764 + TWIF 586 0.0037 (11/2986) 0 * * Os_TE_690650 Chr11 20715655 20715656 - TESSBIG 4057 0.0007 (2/2895) 0 * Os_TE_690649 Os_TE_690649 Chr11 20715648 20715647 + TESSBIG 4057 0.0007 (2/2931) 0 * Os_TE_690650 Os_TE_690646 Chr11 20714793 20714794 + NDNA1TNA_OS 334 0.0039 (10/2588) 0 * Os_TE_690645 Os_TE_690645 Chr11 20714791 20714790 - NDNA1TNA_OS 334 0.0041 (10/2465) 0 * Os_TE_690646 Os_TE_690643 Chr11 20714500 20714501 - ORSgTERT00201216 11284 0.0025 (3/1222) 0 * * Os_TE_690641 Chr11 20714397 20714398 + ORSgTETNOOT01686 252 0.0007 (2/2883) 0 * Os_TE_690640 Os_TE_690640 Chr11 20714393 20714392 + ORSgTETNOOT01531 255 0.0007 (2/2880) 0 * Os_TE_690641 Os_TE_690634 Chr11 20709461 20709460 + INDITTO 263 0.0080 (24/2985) 0 * * Os_TE_690633 Chr11 20709362 20709363 + ORSgTETNOOT00032 218 0.0003 (1/2939) 0 * * Os_TE_690630 Chr11 20708717 20708718 - RIRE5-LTR_OS 6427 0.0007 (2/2878) 0 * * Os_TE_690623 Chr11 20708025 20708026 + ORSgTEMT01601143 237 0.0007 (2/2744) 0 * * Os_TE_690616 Chr11 20707441 20707440 + JOUZHENA 607 0.0097 (26/2675) 0 * * Os_TE_690615 Chr11 20707353 20707352 - ORSgTEMT02400246 177 0.0085 (23/2708) 0 * * Os_TE_690602 Chr11 20705379 20705378 - COPI2_LTR 4733 0.0003 (1/2976) 0 * * Os_TE_690584 Chr11 20701873 20701874 + SZ-62LTR 3649 0.0009 (2/2184) 0 * * Os_TE_690577 Chr11 20700011 20700010 + BUHUI 375 0.0010 (3/2872) 0 * * Os_TE_690566 Chr11 20698000 20697999 - ORSgTEMT00501204 149 0.0198 (59/2977) 0 * * Os_TE_690500 Chr11 20685824 20685825 + COPI2_LTR 4733 0.0068 (20/2924) 0 * Os_TE_690499 Os_TE_690499 Chr11 20685820 20685819 - COPI2_LTR 4733 0.0058 (17/2935) 0 * Os_TE_690500 Os_TE_690484 Chr11 20680100 20680101 - SPMLIKE 10989 0.0027 (8/2970) 0 * Os_TE_690483 Os_TE_690483 Chr11 20680098 20680097 + SPMLIKE 10989 0.0037 (11/2977) 0 * Os_TE_690484 Os_TE_690469 Chr11 20676667 20676668 + ENSPM4_OS 11610 0.0054 (16/2982) 0 * * Os_TE_690467 Chr11 20676629 20676628 + SPMLIKE 10989 0.0037 (11/2975) 0 * * Os_TE_690454 Chr11 20667048 20661086 - ORSiTERT00100062 5674 0.3662 (1051/2870) 1 Intact Os_TE_690449 Os_TE_690449 Chr11 20661086 20667048 + OSTONOR1_LTR 6440 0.3549 (1055/2973) 1 Intact Os_TE_690454 Os_TE_690447 Chr11 20660794 20660795 - ORSgTETN00200001 10994 0.0067 (20/2970) 0 * Os_TE_690446 Os_TE_690446 Chr11 20660792 20660791 + SPMLIKE 10989 0.0072 (19/2622) 0 * Os_TE_690447 Os_TE_690445 Chr11 20660251 20660250 - ORSgTEMT01700299 212 0.1392 (415/2981) 0 * Os_TE_690444 Os_TE_690444 Chr11 20660248 20660249 - ORSgTEMT01701521 154 0.0128 (34/2657) 0 * Os_TE_690445 Os_TE_690436 Chr11 20659096 20659097 - RIREX_LTR 8828 0.0004 (1/2586) 0 * Os_TE_690435 Os_TE_690435 Chr11 20659092 20659091 + RIREX_LTR 8828 0.0004 (1/2590) 0 * Os_TE_690436 Os_TE_690419 Chr11 20651791 20651790 + ORSiTERTOOT00296 5553 0.0003 (1/2994) 0 * * Os_TE_690373 Chr11 20635341 20635340 - ORSgTERT00201216 11284 0.0003 (1/2981) 0 * * Os_TE_690371 Chr11 20635285 20635286 + RIRE2_LTR 11306 0.0007 (2/2932) 0 * * Os_TE_690366 Chr11 20634876 20634875 + MERMITEB 1610 0.0065 (18/2777) 0 * * Os_TE_690365 Chr11 20634406 20634407 - ORSgTETN00200001 10994 0.0118 (33/2785) 0 * * Os_TE_690353 Chr11 20622204 20633789 - RIRE3A_LTR 10580 0.2827 (782/2766) 1 Intact * Os_TE_690343 Chr11 20618849 20618848 + RIREX_LTR 8828 0.0063 (18/2876) 0 * * Os_TE_690342 Chr11 20618795 20618796 + MUDRN5_OS 374 0.0014 (4/2835) 0 * * Os_TE_690310 Chr11 20608232 20608233 + ORSgTEMT04600037 279 0.0004 (1/2726) 0 * * Os_TE_690305 Chr11 20607839 20607840 - ORSgTETN00200001 10994 0.0007 (2/2941) 0 * Os_TE_690304 Os_TE_690304 Chr11 20607837 20607836 + SPMLIKE 10989 0.0027 (8/2913) 0 * Os_TE_690305 Os_TE_690290 Chr11 20605143 20605144 - RIREX_LTR 8828 0.0007 (2/2751) 0 * Os_TE_690289 Os_TE_690289 Chr11 20605139 20605138 + RIREX_LTR 8828 0.0007 (2/2742) 0 * Os_TE_690290 Os_TE_690285 Chr11 20604802 20604801 - DS-RICE4N 715 0.4881 (1357/2780) 0 * * Os_TE_690283 Chr11 20604741 20604742 - ORSgTEMT01601432 239 0.0018 (5/2735) 0 * * Os_TE_690282 Chr11 20604478 20604479 - SZ-40LTR 2465 0.0091 (25/2746) 0 * Os_TE_690281 Os_TE_690281 Chr11 20604474 20604473 + GYPSY-A_LTR 8951 0.0084 (23/2723) 0 * Os_TE_690282 Os_TE_690279 Chr11 20604302 20604301 - TEMPINDAS 4259 0.0036 (10/2752) 0 * * Os_TE_690275 Chr11 20594090 20594091 + SEVERIN-2 1952 0.0029 (8/2754) 0 * * Os_TE_690255 Chr11 20591370 20591371 - RIREX_LTR 8828 0.0022 (6/2780) 0 * Os_TE_690254 Os_TE_690254 Chr11 20591366 20591365 + RIREX_LTR 8828 0.0022 (6/2782) 0 * Os_TE_690255 Os_TE_690253 Chr11 20590331 20590332 - SC-8_LTR 4951 0.1149 (322/2803) 0 * Os_TE_690252 Os_TE_690252 Chr11 20590327 20590326 + SC-8_LTR 4951 0.1153 (323/2802) 0 * Os_TE_690253 Os_TE_690246 Chr11 20587256 20587255 + GYPSY-A_LTR 8951 0.0011 (3/2803) 0 * * Os_TE_690245 Chr11 20587129 20587128 + ORSgTEMT00300063 413 0.0086 (24/2807) 0 * * Os_TE_690240 Chr11 20583767 20583768 + ORSgTEMT00901844 250 0.0021 (6/2897) 0 * * Os_TE_690236 Chr11 20582656 20582655 - SZ-35LTR 3853 0.0007 (2/2683) 0 * * Os_TE_690233 Chr11 20581435 20581436 + ORSgTEMT01602413 239 0.0011 (3/2757) 0 * * Os_TE_690232 Chr11 20581188 20581189 + STOWAWAY9_OS 235 0.0011 (3/2788) 0 * * Os_TE_690229 Chr11 20579736 20579737 - ORSiTETNOOT00134 607 0.0025 (7/2803) 0 * Os_TE_690228 Os_TE_690228 Chr11 20579729 20579728 + ORSiTETNOOT00170 3566 0.0021 (6/2803) 0 * Os_TE_690229 Os_TE_690227 Chr11 20579189 20579188 - DITTO 244 0.0025 (7/2805) 0 * * Os_TE_690221 Chr11 20577470 20577469 + TWIFB1 3737 0.0023 (5/2156) 0 * * Os_TE_690218 Chr11 20576081 20576082 + CLOUD-4 520 0.0164 (49/2991) 0 * Os_TE_690217 Os_TE_690217 Chr11 20576073 20576072 - CLOUD-4 520 0.0154 (46/2988) 0 * Os_TE_690218 Os_TE_690214 Chr11 20574998 20574635 - ORSgTEMT00600524 364 0.7615 (2257/2964) 1 Intact Os_TE_690212 Os_TE_690212 Chr11 20574635 20574995 + ORSgTEMT00600272 361 0.7561 (2247/2972) 1 Intact Os_TE_690214 Os_TE_690178 Chr11 20560011 20560010 + RETRO2_LTR 12874 0.0021 (6/2918) 0 * * Os_TE_690176 Chr11 20558889 20558890 - TRUNCATOR2_LTR 2904 0.0037 (11/2980) 0 * Os_TE_690175 Os_TE_690175 Chr11 20558885 20558884 + ORSiCMCM00100019 2717 0.0037 (11/2991) 0 * Os_TE_690176 Os_TE_690120 Chr11 20549043 20549044 + RETRO1_LTR 8314 0.0007 (2/2992) 0 * Os_TE_690119 Os_TE_690119 Chr11 20549039 20549038 - RETRO1_LTR 8314 0.0007 (2/2993) 0 * Os_TE_690120 Os_TE_690082 Chr11 20539140 20539141 - NDNA1TNA_OS 334 0.0119 (33/2779) 0 * * Os_TE_690078 Chr11 20537171 20537170 - ORSgTEMT00700002 381 0.0035 (10/2888) 0 * * Os_TE_690072 Chr11 20536282 20536281 + SC-8_LTR 4951 0.0077 (23/2988) 0 * * Os_TE_690054 Chr11 20529862 20529863 - CASTAWAY 364 0.0386 (115/2980) 0 * Os_TE_690053 Os_TE_690053 Chr11 20529861 20529860 + ORSgTEMT00600360 369 0.0391 (116/2968) 0 * Os_TE_690054 Os_TE_690030 Chr11 20521257 20521258 + TWIFBIG 3567 0.0161 (47/2917) 0 * Os_TE_690029 Os_TE_690029 Chr11 20521250 20521249 - ORSiTETNOOT00216 3569 0.0168 (49/2916) 0 * Os_TE_690030 Os_TE_690028 Chr11 20521106 20521107 + OSTE33 1012 0.4816 (1271/2639) 0 * Os_TE_690027 Os_TE_690027 Chr11 20521096 20521095 - OSTE33 1012 0.5370 (1575/2933) 0 * Os_TE_690028 Os_TE_690020 Chr11 20520384 20520383 + SEVERIN-2 1952 0.0413 (122/2954) 0 * * Os_TE_690019 Chr11 20520193 20520194 - ORSgTEMT06100010 269 0.0003 (1/2970) 0 * Os_TE_690018 Os_TE_690018 Chr11 20520191 20520190 + ORSgTEMT06100010 269 0.0003 (1/2969) 0 * Os_TE_690019 Os_TE_690003 Chr11 20513403 20513404 + SZ-22_LTR 4403 0.0024 (7/2970) 0 * Os_TE_690002 Os_TE_690002 Chr11 20513399 20513398 - SZ-22_LTR 4403 0.0024 (7/2975) 0 * Os_TE_690003 Os_TE_689997 Chr11 20511606 20511607 + RETRO2A_LTR 12895 0.0003 (1/2956) 0 * * Os_TE_689977 Chr11 20506938 20506689 - ORSgTEMT00901469 250 0.7808 (2219/2842) 1 Intact Os_TE_689972 Os_TE_689972 Chr11 20506689 20506936 - ORSgTEMT00901723 248 0.7688 (2198/2859) 1 Intact Os_TE_689977 Os_TE_689958 Chr11 20503211 20503212 - MERMITE18B 1306 0.0337 (91/2698) 0 * Os_TE_689957 Os_TE_689957 Chr11 20503203 20503202 + MERMITE18B 1306 0.0447 (118/2642) 0 * Os_TE_689958 Os_TE_689956 Chr11 20499381 20499382 + SC-8_LTR 4951 0.0008 (2/2647) 0 * Os_TE_689955 Os_TE_689955 Chr11 20499377 20499376 - SC-8_LTR 4951 0.0008 (2/2647) 0 * Os_TE_689956 Os_TE_689946 Chr11 20490427 20490428 + MPING 430 0.0196 (51/2600) 0 * Os_TE_689945 Os_TE_689945 Chr11 20490425 20490424 - MPING 430 0.0189 (49/2594) 0 * Os_TE_689946 Os_TE_689938 Chr11 20489718 20488111 + MERMITEB 1610 0.8503 (2233/2626) 1 Intact Os_TE_689933 Os_TE_689933 Chr11 20488110 20489718 + MERMITEB 1610 0.8459 (2195/2595) 1 Intact Os_TE_689938 Os_TE_689927 Chr11 20483775 20483776 - SC-3_LTR 5748 0.0004 (1/2665) 0 * Os_TE_689926 Os_TE_689926 Chr11 20483771 20483770 + ORSiTERTOOT00296 5553 0.0003 (1/2977) 0 * Os_TE_689927 Os_TE_689916 Chr11 20481126 20480845 - OSTE19 162 0.8507 (2234/2626) 1 Intact * Os_TE_689908 Chr11 20480680 20480681 + ORSgTEMT01601122 212 0.1572 (405/2577) 0 * * Os_TE_689890 Chr11 20473064 20473063 + COPI2_LTR 4733 0.0004 (1/2248) 0 * * Os_TE_689887 Chr11 20471272 20464839 + COPIA2-LTR_OS 6433 0.2247 (506/2252) 1 Intact Os_TE_689883 Os_TE_689883 Chr11 20464839 20471272 - COPIA2-LTR_OS 6433 0.2287 (516/2256) 1 Intact Os_TE_689887 Os_TE_689879 Chr11 20463529 20463530 + COPI2_LTR 4733 0.0038 (10/2653) 0 * Os_TE_689878 Os_TE_689878 Chr11 20463525 20463524 - COPI2_LTR 4733 0.0045 (12/2665) 0 * Os_TE_689879 Os_TE_689875 Chr11 20462956 20462955 + COPI2_LTR 4733 0.0004 (1/2665) 0 * * Os_TE_689874 Chr11 20462501 20462502 + ORSgTEMT02900076 336 0.1627 (433/2662) 0 * * Os_TE_689872 Chr11 20461765 20461764 - COPI2_LTR 4733 0.0004 (1/2651) 0 * * Os_TE_689871 Chr11 20461629 20461630 - COPIA2-LTR_OS 6433 0.0004 (1/2260) 0 * Os_TE_689870 Os_TE_689870 Chr11 20461625 20461624 + COPIA2-LTR_OS 6433 0.0004 (1/2266) 0 * Os_TE_689871 Os_TE_689847 Chr11 20451984 20451983 + GYPSY-A_LTR 8951 0.0021 (4/1863) 0 * * Os_TE_689842 Chr11 20450728 20450729 + TELIA 141 0.0004 (1/2236) 0 * * Os_TE_689838 Chr11 20447199 20447198 - SZ-43LTR 4039 0.0076 (17/2249) 0 * * Os_TE_689800 Chr11 20437282 20437495 + ORSgTEMT01400024 215 0.7467 (2223/2977) 1 Intact * Os_TE_689798 Chr11 20437141 20437142 - F524 291 0.0042 (12/2829) 0 * * Os_TE_689788 Chr11 20436367 20435036 - MERMITE18C 1473 0.7513 (2169/2887) 1 Intact Os_TE_689787 Os_TE_689787 Chr11 20435036 20436367 + MERMITE18C 1473 0.7370 (2068/2806) 1 Intact Os_TE_689788 Os_TE_689777 Chr11 20432577 20432578 - ORSgTETNOOT00908 242 0.0027 (8/2988) 0 * Os_TE_689776 Os_TE_689776 Chr11 20432575 20432574 + ORSgTETNOOT00908 242 0.0027 (8/2971) 0 * Os_TE_689777 Os_TE_689765 Chr11 20425400 20425399 - ORSgTEMT01500002 239 0.0011 (3/2809) 0 * * Os_TE_689761 Chr11 20423663 20423662 + ORSgTEMT00300063 413 0.0086 (25/2906) 0 * * Os_TE_689750 Chr11 20419414 20419415 - MuDR3_OS 8604 0.0245 (72/2939) 0 * Os_TE_689749 Os_TE_689749 Chr11 20419405 20419404 - MuDR3_OS 8604 0.0268 (79/2950) 0 * Os_TE_689750 Os_TE_689746 Chr11 20406117 20406118 - COPI2_LTR 4733 0.1279 (111/868) 0 * Os_TE_689745 Os_TE_689745 Chr11 20406113 20406112 + COPI2_LTR 4733 0.1324 (116/876) 0 * Os_TE_689746 Os_TE_689724 Chr11 20398072 20398073 + RIREX_LTR 8828 0.0408 (41/1006) 0 * Os_TE_689723 Os_TE_689723 Chr11 20398068 20398067 - RIREX_LTR 8828 0.0389 (39/1002) 0 * Os_TE_689724 Os_TE_689713 Chr11 20393902 20393901 + TWIFBIG 3567 0.0377 (37/981) 0 * * Os_TE_689711 Chr11 20392464 20392465 + TWIF 586 0.0133 (12/902) 0 * * Os_TE_689705 Chr11 20390714 20390715 + MPING 430 0.0010 (1/1014) 0 * Os_TE_689704 Os_TE_689704 Chr11 20390712 20390711 - MPING 430 0.0010 (1/1014) 0 * Os_TE_689705 Os_TE_689703 Chr11 20388944 20388945 + TWIFB1 3737 0.0010 (1/992) 0 * * Os_TE_689693 Chr11 20383660 20383973 + STOWAWAY41_OS 264 0.6699 (1043/1557) 1 Intact * Os_TE_689691 Chr11 20381971 20381972 - NDNA1TNA_OS 334 0.0671 (62/924) 0 * Os_TE_689690 Os_TE_689690 Chr11 20381969 20381968 + NDNA1TNA_OS 334 0.1224 (122/997) 0 * Os_TE_689691 Os_TE_689689 Chr11 20381854 20381855 + TWIF 586 0.0467 (48/1027) 0 * Os_TE_689688 Os_TE_689688 Chr11 20381847 20381846 - ORSiTETNOOT00134 607 0.0456 (47/1030) 0 * Os_TE_689689 Os_TE_689666 Chr11 20376284 20376697 + ORSgTEMT00300063 413 0.5319 (551/1036) 1 Intact * Os_TE_689655 Chr11 20359662 20359661 - SZ-22_LTR 4403 0.0007 (2/2962) 0 * * Os_TE_689645 Chr11 20356069 20356068 - ORSgTEMT02400179 221 0.0537 (160/2981) 0 * Os_TE_689644 Os_TE_689644 Chr11 20356066 20356067 - TYPEM 227 0.0540 (161/2983) 0 * Os_TE_689645 Os_TE_689643 Chr11 20355181 20355182 + SEVERIN-2 1952 0.1238 (369/2980) 0 * * Os_TE_689638 Chr11 20354291 20354290 + ORSgTETNOOT01834 251 0.0003 (1/2964) 0 * * Os_TE_689633 Chr11 20352700 20351419 + RETRO2_LTR 12874 0.1854 (553/2982) 1 Solo_LTR Os_TE_689630 Os_TE_689630 Chr11 20351419 20352700 - RETRO2_LTR 12874 0.1864 (555/2977) 1 Solo_LTR Os_TE_689633 Os_TE_689628 Chr11 20351014 20351013 + TREP219 104 0.0041 (12/2954) 0 * * Os_TE_689618 Chr11 20347299 20347300 + INDITTO 263 0.0044 (13/2935) 0 * Os_TE_689617 Os_TE_689617 Chr11 20347297 20347296 - INDITTO 263 0.0041 (12/2935) 0 * Os_TE_689618 Os_TE_689616 Chr11 20346660 20345546 + OSTE33 1012 0.1811 (536/2960) 1 Intact * Os_TE_689614 Chr11 20345515 20345516 + SEVERIN-2 1952 0.0170 (50/2939) 0 * * Os_TE_689607 Chr11 20342235 20341938 - ORSgTEMT00101177 333 0.5129 (1468/2862) 1 Intact * Os_TE_689603 Chr11 20341517 20341516 - ORSgTEMT04800089 367 0.0027 (8/2983) 0 * * Os_TE_689599 Chr11 20340757 20340758 - ORSgTEMT01601432 239 0.0250 (74/2963) 0 * * Os_TE_689595 Chr11 20339745 20339744 - RETRO1_LTR 8314 0.4416 (1266/2867) 0 * * Os_TE_689579 Chr11 20335054 20335053 - ORSgTEMT00501758 147 0.0010 (3/2973) 0 * * Os_TE_689574 Chr11 20334341 20334342 - NDNA1TNA_OS 334 0.0029 (8/2714) 0 * Os_TE_689573 Os_TE_689573 Chr11 20334339 20334338 + NDNA1TNA_OS 334 0.0026 (7/2737) 0 * Os_TE_689574 Os_TE_689567 Chr11 20326622 20326621 - TYPEU1 380 0.0027 (8/2957) 0 * * Os_TE_689562 Chr11 20322588 20322589 - SC-3_LTR 5748 0.0040 (12/2996) 0 * Os_TE_689561 Os_TE_689561 Chr11 20322584 20322583 + ORSiTERTOOT00296 5553 0.0040 (12/2995) 0 * Os_TE_689562 Os_TE_689558 Chr11 20321288 20321289 - ORSiTETNOOT00134 607 0.0005 (1/2077) 0 * * Os_TE_689534 Chr11 20318370 20318371 + ORSiCMCM00100019 2717 0.6643 (1666/2508) 0 * * Os_TE_689533 Chr11 20318366 20318365 - TRUNCATOR2_LTR 2904 0.4861 (1396/2872) 0 * * Os_TE_689531 Chr11 20316950 20316951 - RIREX_LTR 8828 0.0003 (1/2992) 0 * Os_TE_689530 Os_TE_689530 Chr11 20316946 20316945 + RIREX_LTR 8828 0.0003 (1/2987) 0 * Os_TE_689531 Os_TE_689527 Chr11 20314603 20314602 + ORSgTEMT01602669 216 0.0031 (8/2576) 0 * Os_TE_689526 Os_TE_689526 Chr11 20314600 20314601 - ORSgTEMT01602413 239 0.0027 (8/2924) 0 * Os_TE_689527 Os_TE_689520 Chr11 20313046 20313283 - ORSgTEMT01600639 228 0.8776 (1484/1691) 1 Intact * Os_TE_689519 Chr11 20312693 20312692 - CACTA-J 1159 0.0044 (7/1578) 0 * * Os_TE_689504 Chr11 20304744 20304387 - OLO24 345 0.7398 (1220/1649) 1 Intact * Os_TE_689499 Chr11 20304266 20297940 + RIRE5-LTR_OS 6427 0.3614 (566/1566) 1 Intact * Os_TE_689488 Chr11 20297680 20297679 + EXPLORER 210 0.0006 (1/1587) 0 * * Os_TE_689487 Chr11 20297514 20297515 - COPI2_LTR 4733 0.0040 (6/1500) -1 * Os_TE_689486 Os_TE_689486 Chr11 20297510 20297509 + COPI2_LTR 4733 0.0047 (7/1498) -1 * Os_TE_689487 Os_TE_689485 Chr11 20297423 20297422 + STOWAWAY44_OS 240 0.0041 (6/1477) 0 * Os_TE_689484 Os_TE_689484 Chr11 20297420 20297421 + STOWAWAY44_OS 240 0.0034 (5/1472) 0 * Os_TE_689485 Os_TE_689465 Chr11 20291871 20291872 + ORSgTEMT01700471 151 0.0049 (8/1636) 0 * * Os_TE_689459 Chr11 20291001 20291000 + STOWAWAY9_OS 235 0.0048 (8/1652) 0 * * Os_TE_689445 Chr11 20289645 20289646 + RETRO2A_LTR 12895 0.0499 (82/1643) 0 * Os_TE_689444 Os_TE_689444 Chr11 20289641 20289640 - RETRO2_LTR 12874 0.0497 (81/1631) 0 * Os_TE_689445 Os_TE_689441 Chr11 20289547 20289298 - ORSgTEMT00901723 248 0.8940 (1467/1641) 1 Intact * Os_TE_689434 Chr11 20288684 20288685 - CLOUD 734 0.0019 (3/1586) 0 * * Os_TE_689421 Chr11 20284913 20284912 - ORSgTEMT00900099 250 0.0051 (8/1569) 0 * Os_TE_689420 Os_TE_689420 Chr11 20284911 20284912 - ORSgTEMT00901345 248 0.0051 (8/1582) 0 * Os_TE_689421 Os_TE_689419 Chr11 20284863 20284864 - MPING 430 0.0332 (52/1565) 0 * Os_TE_689418 Os_TE_689418 Chr11 20284861 20284860 + MPING 430 0.0332 (52/1567) 0 * Os_TE_689419 Os_TE_689414 Chr11 20282878 20282877 - SZ-10LTR 1412 0.0055 (8/1466) 0 * * Os_TE_689401 Chr11 20276304 20276305 - TELIA 141 0.0007 (1/1481) 0 * Os_TE_689400 Os_TE_689400 Chr11 20276296 20276295 + TELIA 141 0.0007 (1/1486) 0 * Os_TE_689401 Os_TE_689386 Chr11 20273930 20273442 - MERMITE18A 532 0.8557 (1560/1823) 0.6 Intact * Os_TE_689376 Chr11 20272064 20272063 + EnSpm-N1_OS 4256 0.0012 (2/1615) 0 * * Os_TE_689367 Chr11 20267948 20267947 - ORSgTEMT00100124 360 0.0051 (8/1572) 0 * Os_TE_689366 Os_TE_689366 Chr11 20267946 20267947 + NDNA1TNA_OS 334 0.0051 (8/1568) 0 * Os_TE_689367 Os_TE_689365 Chr11 20267748 20267747 + SPMLIKE 10989 0.0050 (8/1587) 0 * * Os_TE_689355 Chr11 20266421 20266190 + STOWAWAY42_OS 242 0.7628 (1566/2053) 1 Intact * Os_TE_689344 Chr11 20265684 20265685 + STOWAWAY9_OS 235 0.3453 (808/2340) 0 * * Os_TE_689332 Chr11 20260625 20260624 + TRUNCATOR 2918 0.0724 (102/1408) 0 * Os_TE_689331 Os_TE_689331 Chr11 20260624 20260625 - TRUNCATOR 2918 0.0758 (99/1306) 0 * Os_TE_689332 Os_TE_689316 Chr11 20257420 20257421 + ORSgTEMT00600499 352 0.0038 (6/1587) 0 * Os_TE_689315 Os_TE_689315 Chr11 20257414 20257413 + ORSgTEMT00600376 329 0.0044 (7/1587) 0 * Os_TE_689316 Os_TE_689310 Chr11 20256515 20256514 - TREP219 104 0.0009 (2/2219) 0 * * Os_TE_689308 Chr11 20256423 20256422 + SEVERIN-2 1952 0.3648 (560/1535) 0 * * Os_TE_689244 Chr11 20199889 20203748 - SZ-35LTR 3853 0.3617 (570/1576) 1 Intact * Os_TE_689177 Chr11 20182030 20182031 + HARB-1_OS 5166 0.0014 (4/2935) 0 * Os_TE_689176 Os_TE_689176 Chr11 20182028 20182027 - HARB-1_OS 5166 0.0013 (4/2978) 0 * Os_TE_689177 Os_TE_689170 Chr11 20178110 20178111 - ORSgTEMT02400179 221 0.0154 (43/2788) 0 * * Os_TE_689168 Chr11 20177919 20177782 + ORSgTEMT01700632 122 0.6717 (1958/2915) 1 Intact * Os_TE_689165 Chr11 20177776 20177777 - RIRE2_LTR 11306 0.4380 (1303/2975) 0.07 * * Os_TE_689163 Chr11 20177201 20177202 - RIRE2_LTR 11306 0.4382 (1304/2976) 0 * Os_TE_689162 Os_TE_689162 Chr11 20177197 20177196 + RIRE2_LTR 11306 0.4348 (1298/2985) 0 * Os_TE_689163 Os_TE_689159 Chr11 20176982 20176981 - COWARD 200 0.3426 (1020/2977) 0 * * Os_TE_689158 Chr11 20176955 20176956 + MERMITEB 1610 0.3332 (984/2953) 0 * Os_TE_689157 Os_TE_689157 Chr11 20176949 20176948 - MERMITE18B 1306 0.2363 (617/2611) 0 * Os_TE_689158 Os_TE_689156 Chr11 20175348 20175349 - RETRO2_LTR 12874 0.0251 (74/2954) 0 * * Os_TE_689152 Chr11 20174467 20174468 + ORSiTERT00100080 6173 0.0024 (7/2977) 0 * Os_TE_689151 Os_TE_689151 Chr11 20174462 20174461 - ORSiTERT00100080 6173 0.0024 (7/2977) 0 * Os_TE_689152 Os_TE_689149 Chr11 20174283 20174282 + ORSgTETNOOT01998 254 0.0007 (2/2960) 0 * * Os_TE_689103 Chr11 20151253 20151252 + ORSgTEMT00101674 340 0.1015 (238/2345) 0 * * Os_TE_689102 Chr11 20151195 20151196 + RIRE2_LTR 11306 0.0007 (2/2723) 0 * * Os_TE_689100 Chr11 20151148 20151149 - INDITTO 263 0.0692 (206/2979) 0 * * Os_TE_689098 Chr11 20150977 20150978 - F770 284 0.5384 (1318/2448) 0 * Os_TE_689097 Os_TE_689097 Chr11 20150975 20150974 + F770 284 0.4390 (1302/2966) 0 * Os_TE_689098 Os_TE_689096 Chr11 20150958 20150959 + ORSgTEMT00500385 153 0.2000 (596/2980) 0 * * Os_TE_689095 Chr11 20150587 20150588 - COWARD-3 221 0.2021 (604/2988) 0 * * Os_TE_689094 Chr11 20150007 20150008 + LTR10_OS 202 0.0017 (5/2989) 0 * Os_TE_689093 Os_TE_689093 Chr11 20149999 20149998 - LTR10_OS 202 0.0013 (4/2987) 0 * Os_TE_689094 Os_TE_689092 Chr11 20149764 20149765 - ORSgTEMT00101174 225 0.1970 (574/2914) 0 * * Os_TE_689082 Chr11 20146920 20146919 - OSTONOR1_LTR 6440 0.0003 (1/2991) 0 * * Os_TE_689081 Chr11 20145534 20145533 + ORSgTETNOOT01930 140 0.0003 (1/2988) 0 * * Os_TE_689080 Chr11 20145302 20145301 + ORSgTEMT01602083 237 0.0023 (7/2989) 0 * Os_TE_689079 Os_TE_689079 Chr11 20145299 20145300 - TREP215 239 0.0027 (8/2990) 0 * Os_TE_689080 Os_TE_689077 Chr11 20144826 20144825 + ORSiTERTOOT00226 792 0.0003 (1/2998) 0 * * Os_TE_689073 Chr11 20141307 20141308 - STOWAWAY44_OS 240 0.0003 (1/2917) 0 * * Os_TE_689019 Chr11 20117085 20117086 + TRUNCATOR2_LTR 2904 0.0668 (199/2977) 0 * Os_TE_689018 Os_TE_689018 Chr11 20117081 20117080 - TRUNCATOR2_LTR 2904 0.0724 (216/2982) 0 * Os_TE_689019 Os_TE_689014 Chr11 20116115 20116116 - ORSiTETNOOT00134 607 0.2365 (530/2241) 0 * * Os_TE_689012 Chr11 20116035 20116036 + MPING 430 0.0030 (6/1992) 0 * Os_TE_689011 Os_TE_689011 Chr11 20116033 20116032 - MPING 430 0.0039 (8/2071) 0 * Os_TE_689012 Os_TE_689003 Chr11 20109244 20109245 - TYPEH 309 0.0024 (7/2959) 0 * * Os_TE_688932 Chr11 20070524 20070523 + STOWAWAY47_OS 148 0.0070 (4/568) 0 * * Os_TE_688917 Chr11 20063437 20063438 + F770 284 0.5006 (1230/2457) 0 * Os_TE_688916 Os_TE_688916 Chr11 20063435 20063434 - F770 284 0.4670 (1272/2724) 0 * Os_TE_688917 Os_TE_688904 Chr11 20062622 20062623 + ORSgTEMT00600502 360 0.0004 (1/2760) 0 * Os_TE_688903 Os_TE_688903 Chr11 20062620 20062619 - ORSgTEMT00600085 364 0.0004 (1/2752) 0 * Os_TE_688904 Os_TE_688846 Chr11 20044702 20044501 - COWARD 200 0.8595 (2367/2754) 1 Intact * Os_TE_688802 Chr11 20033376 20033113 + STOWAWAY45_OS 266 0.2048 (611/2984) 1 Intact Os_TE_688801 Os_TE_688801 Chr11 20033113 20033376 - STOWAWAY45_OS 266 0.2053 (614/2991) 1 Intact Os_TE_688802 Os_TE_688783 Chr11 20019801 20019802 + ORSiTERTOOT00296 5553 0.0003 (1/2938) 0 * Os_TE_688782 Os_TE_688782 Chr11 20019797 20019796 - SC-3_LTR 5748 0.0003 (1/2972) 0 * Os_TE_688783 Os_TE_688774 Chr11 20015475 20017046 + SZ-37_LTR 12001 0.6171 (1845/2990) 1 Solo_LTR * Os_TE_688771 Chr11 20014255 20014256 + TRUNCATOR 2918 0.1806 (533/2952) 0 * * Os_TE_688768 Chr11 20013403 20013404 - ORSgTEMT00901723 248 0.4127 (1140/2762) 0 * * Os_TE_688761 Chr11 20007785 20007786 + RIRE5-LTR_OS 6427 0.0007 (2/2932) 0 * * Os_TE_688705 Chr11 19984523 19984522 - RPO_OS 1983 0.8026 (2314/2883) 0 * * Os_TE_688704 Chr11 19984416 19984417 + COPIA2-LTR_OS 6433 0.0004 (1/2624) 0 * Os_TE_688703 Os_TE_688703 Chr11 19984412 19984411 - COPIA2-LTR_OS 6433 0.0004 (1/2725) 0 * Os_TE_688704 Os_TE_688701 Chr11 19984291 19984059 + ORSgTETNOOT01219 231 0.2626 (587/2235) 1 Intact Os_TE_688700 Os_TE_688700 Chr11 19984055 19984297 + ORSgTETNOOT00908 242 0.2093 (561/2680) 1 Intact Os_TE_688701 Os_TE_688684 Chr11 19976185 19976186 + SC-8_LTR 4951 0.0003 (1/2986) 0 * * Os_TE_688642 Chr11 19962801 19962800 + ORSgTEMT01602181 239 0.0603 (179/2970) 0 * * Os_TE_688634 Chr11 19959523 19959524 - COPI2_LTR 4733 0.0003 (1/2987) 0 * Os_TE_688633 Os_TE_688633 Chr11 19959519 19959518 + COPI2_LTR 4733 0.0003 (1/2990) 0 * Os_TE_688634 Os_TE_688618 Chr11 19948997 19948998 - ORSgTEMT01600032 240 0.6119 (1764/2883) 0 * * Os_TE_688614 Chr11 19948741 19948742 + COPIA2-LTR_OS 6433 0.0040 (12/2983) 0 * Os_TE_688613 Os_TE_688613 Chr11 19948737 19948736 - COPIA2-LTR_OS 6433 0.0044 (12/2725) 0 * Os_TE_688614 Os_TE_688597 Chr11 19946301 19946300 - MERMITE18B 1306 0.6181 (1811/2930) 0 * * Os_TE_688590 Chr11 19941570 19941569 + ORSgTEMT01601122 212 0.0040 (12/2975) 0 * Os_TE_688589 Os_TE_688589 Chr11 19941569 19941570 + STOWAWAY21_OS 243 0.0034 (10/2983) 0 * Os_TE_688590 Os_TE_688588 Chr11 19940958 19940957 + ORSgTEMT01601591 242 0.0003 (1/2862) 0 * * Os_TE_688586 Chr11 19939651 19939652 + COPIA2-LTR_OS 6433 0.0004 (1/2750) 0 * Os_TE_688585 Os_TE_688585 Chr11 19939647 19939646 - COPIA2-LTR_OS 6433 0.0004 (1/2507) 0 * Os_TE_688586 Os_TE_688582 Chr11 19939047 19939048 - MPING 430 0.0087 (23/2649) 0 * Os_TE_688581 Os_TE_688581 Chr11 19939045 19939044 + MPING 430 0.0086 (24/2782) 0 * Os_TE_688582 Os_TE_688580 Chr11 19938928 19938929 - MPING 430 0.0032 (9/2855) 0 * * Os_TE_688565 Chr11 19934029 19934030 - DS-RICE2N 613 0.0017 (5/2996) 0 * Os_TE_688564 Os_TE_688564 Chr11 19934022 19934021 + DS-RICE2N 613 0.0020 (6/2997) 0 * Os_TE_688565 Os_TE_688549 Chr11 19928711 19928712 + MUDRN5_OS 374 0.0003 (1/2990) 0 * * Os_TE_688539 Chr11 19925429 19925576 - ORSgTEMT00501204 149 0.8625 (2579/2990) 1 Intact * Os_TE_688528 Chr11 19922498 19922499 + INDITTO 263 0.0050 (14/2803) 0 * * Os_TE_688500 Chr11 19914306 19914305 + CACTA-B 1103 0.2264 (670/2959) 0 * Os_TE_688499 Os_TE_688499 Chr11 19914305 19914306 - ORSgTETN00200001 10994 0.2306 (685/2970) 0 * Os_TE_688500 Os_TE_688475 Chr11 19902119 19902120 - RETRO2_LTR 12874 0.1999 (586/2931) 0 * Os_TE_688474 Os_TE_688474 Chr11 19902115 19902114 + RETRO2_LTR 12874 0.1120 (303/2705) 0 * Os_TE_688475 Os_TE_688459 Chr11 19898051 19898050 - ORSgTEMT01601493 303 0.2227 (653/2932) 0 * Os_TE_688458 Os_TE_688458 Chr11 19898048 19898049 - ORSgTEMT01601493 303 0.2109 (614/2911) 0 * Os_TE_688459 Os_TE_688453 Chr11 19895142 19895143 - STOWAWAY44_OS 240 0.0003 (1/2982) 0 * * Os_TE_688451 Chr11 19894455 19894456 + SPMLIKE 10989 0.0094 (28/2990) 0 * Os_TE_688450 Os_TE_688450 Chr11 19894453 19894452 - ORSgTETN00200001 10994 0.0087 (26/2990) 0 * Os_TE_688451 Os_TE_688438 Chr11 19887698 19887699 + ORSgTEMT00700017 386 0.0003 (1/2988) 0 * * Os_TE_688431 Chr11 19884323 19884324 + OSTE20 496 0.6161 (1802/2925) 0 * * Os_TE_688428 Chr11 19883361 19883360 + NDNA2TNA_OS 346 0.0097 (29/2993) 0 * * Os_TE_688413 Chr11 19878028 19878027 + STOWAWAY45_OS 266 0.1834 (534/2911) 0 * Os_TE_688412 Os_TE_688412 Chr11 19878022 19878023 + STOWAWAY45_OS 266 0.2071 (616/2974) 0 * Os_TE_688413 Os_TE_688398 Chr11 19873878 19873877 + MERMITE18E 1528 0.0007 (2/2946) 0 * * Os_TE_688397 Chr11 19873780 19873781 - ORSiTERT00200154 9386 0.7698 (2280/2962) 0 * Os_TE_688396 Os_TE_688396 Chr11 19873774 19873773 + TRUNCATOR 2918 0.7731 (2297/2971) 0 * Os_TE_688397 Os_TE_688394 Chr11 19873107 19873106 - ORSgTEMT01602592 236 0.0017 (5/2991) 0 * * Os_TE_688391 Chr11 19871023 19871022 - STOWAWAY10_OS 259 0.0024 (7/2957) 0 * * Os_TE_688389 Chr11 19870150 19870151 - COPIA2-LTR_OS 6433 0.0209 (62/2963) 0 * Os_TE_688388 Os_TE_688388 Chr11 19870146 19870145 + COPIA2-LTR_OS 6433 0.0199 (59/2961) 0 * Os_TE_688389 Os_TE_688387 Chr11 19869919 19869918 + OSTE18 129 0.0007 (2/2894) 0 * * Os_TE_688360 Chr11 19860328 19860327 + RETROSAT4_LTR 13504 0.1959 (570/2910) 0 * * Os_TE_688335 Chr11 19853932 19853933 + HARB-1_OS 5166 0.0003 (1/2898) 0 * Os_TE_688334 Os_TE_688334 Chr11 19853930 19853929 - HARB-1_OS 5166 0.0003 (1/2957) 0 * Os_TE_688335 Os_TE_688329 Chr11 19849515 19849676 - OsSN3 183 0.5334 (1511/2833) 1 Intact * Os_TE_688326 Chr11 19844130 19844131 + COPIA2-LTR_OS 6433 0.1627 (426/2618) 0 * Os_TE_688325 Os_TE_688325 Chr11 19844126 19844125 - COPIA2-LTR_OS 6433 0.1584 (433/2734) 0 * Os_TE_688326 Os_TE_688323 Chr11 19844109 19844108 - ORSgTETN00200001 10994 0.1714 (450/2626) 0 * * Os_TE_688315 Chr11 19839085 19839086 - ORSgTETN00200001 10994 0.2738 (417/1523) 0 * Os_TE_688314 Os_TE_688314 Chr11 19839083 19839082 + SPMLIKE 10989 0.2089 (454/2173) 0 * Os_TE_688315 Os_TE_688292 Chr11 19832271 19832270 - RIREX_LTR 8828 0.0003 (1/2895) 0 * * Os_TE_688290 Chr11 19832068 19832069 + ORSgTEMT01700513 151 0.0006 (1/1639) 0 * * Os_TE_688286 Chr11 19831274 19831474 + COWARD 200 0.6655 (1496/2248) 1 Intact Os_TE_688284 Os_TE_688284 Chr11 19831205 19822353 + EnSpm-15_OS 8871 0.6497 (1495/2301) 1 Intact Os_TE_688286 Os_TE_688264 Chr11 19814338 19813671 - STOWAWAY41_OS 264 0.8591 (1756/2044) 1 Intact * Os_TE_688254 Chr11 19811277 19811278 - SUSU 279 0.0997 (175/1756) 0 * Os_TE_688253 Os_TE_688253 Chr11 19811275 19811274 + ORSgTEMT05000092 279 0.0996 (175/1757) 0 * Os_TE_688254 Os_TE_688251 Chr11 19808971 19808970 - ORSgTEMT01601696 238 0.0039 (7/1782) 0 * Os_TE_688250 Os_TE_688250 Chr11 19808968 19808969 - ORSgTEMT01601834 234 0.0039 (7/1782) 0 * Os_TE_688251 Os_TE_688239 Chr11 19804896 19804897 - ORSgTEMT00900402 248 0.2602 (722/2775) 0 * * Os_TE_688231 Chr11 19803202 19803203 + TRUNCATOR 2918 0.2115 (613/2898) 0.06 * * Os_TE_688209 Chr11 19780383 19780384 - ORSiTERT00200154 9386 0.0011 (2/1751) 0 * * Os_TE_688206 Chr11 19779349 19779350 + RIREX_LTR 8828 0.0024 (4/1687) 0 * Os_TE_688205 Os_TE_688205 Chr11 19779345 19779344 - RIREX_LTR 8828 0.0024 (4/1689) 0 * Os_TE_688206 Os_TE_688190 Chr11 19773137 19773138 - COPI2_LTR 4733 0.0017 (3/1751) 0 * Os_TE_688189 Os_TE_688189 Chr11 19773133 19773132 + COPI2_LTR 4733 0.0006 (1/1759) 0 * Os_TE_688190 Os_TE_688183 Chr11 19770807 19770808 + RIRE2_LTR 11306 0.0168 (9/535) 0 * Os_TE_688182 Os_TE_688182 Chr11 19770803 19770802 - RIRE2_LTR 11306 0.0146 (8/547) 0 * Os_TE_688183 Os_TE_688180 Chr11 19770557 19770558 - MERMITE18D 1491 0.6652 (1059/1592) 0 * * Os_TE_688179 Chr11 19770174 19770175 + SPMLIKE 10989 0.0052 (9/1745) 0 * Os_TE_688178 Os_TE_688178 Chr11 19770172 19770171 - ORSgTETN00200001 10994 0.0046 (8/1752) 0 * Os_TE_688179 Os_TE_688177 Chr11 19770111 19770110 - ORSgTEMT00901138 254 0.7011 (1229/1753) 0 * Os_TE_688176 Os_TE_688176 Chr11 19770110 19770111 + ORSgTEMT00900288 216 0.6977 (1214/1740) 0 * Os_TE_688177 Os_TE_688173 Chr11 19769611 19769612 - ORSgTEMT01400033 210 0.0007 (2/2815) 0 * * Os_TE_688172 Chr11 19769544 19769543 - OLO24 345 0.7766 (1745/2247) 0 * * Os_TE_688170 Chr11 19769298 19769299 - ORSgTEMT00100921 319 0.5969 (779/1305) 0 * * Os_TE_688169 Chr11 19769291 19769290 - ORSgTETNOOT02208 262 0.0370 (42/1136) 0 * * Os_TE_688168 Chr11 19769290 19769291 + ORSgTEMT00901844 250 0.0273 (37/1354) 0 * Os_TE_688167 Os_TE_688167 Chr11 19769277 19769276 + ORSgTETNOOT01275 140 0.0009 (1/1108) 0 * Os_TE_688168 Os_TE_688165 Chr11 19768964 19768965 + CACTA-B 1103 0.0162 (27/1663) 0 * Os_TE_688164 Os_TE_688164 Chr11 19768960 19768959 - CACTA-H 1152 0.0222 (27/1215) 0 * Os_TE_688165 Os_TE_688156 Chr11 19766571 19766572 - CACTA-M 1129 0.2548 (321/1260) 0 * * Os_TE_688150 Chr11 19763553 19766191 + DS-RICE4N 715 0.1416 (191/1349) 1 Intact * Os_TE_688149 Chr11 19763444 19763443 - ORSgTEMT01601696 238 0.2532 (431/1702) 0 * Os_TE_688148 Os_TE_688148 Chr11 19763441 19763442 - ORSgTEMT01601696 238 0.2510 (445/1773) 0 * Os_TE_688149 Os_TE_688147 Chr11 19763333 19763332 - ORSgTEMT00901723 248 0.0007 (2/2931) 0 * * Os_TE_688086 Chr11 19748403 19748610 - LTR10_OS 202 0.8573 (1964/2291) 1 Intact * Os_TE_688083 Chr11 19748138 19748139 + TWIFBIG 3567 0.3490 (469/1344) 0 * * Os_TE_688049 Chr11 19735989 19735988 - ORSgTEMT00901345 248 0.2332 (581/2491) 0 * * Os_TE_688048 Chr11 19735791 19735790 + ORSgTEMT00900319 250 0.2640 (711/2693) 0 * * Os_TE_688047 Chr11 19735583 19735584 - ORSgTEMT00900760 239 0.2603 (703/2701) 0 * * Os_TE_688041 Chr11 19732668 19732669 + SC-8_LTR 4951 0.0005 (1/1953) 0 * * Os_TE_687994 Chr11 19713714 19713715 - STOWAWAY17_OS 259 0.0003 (1/2906) 0 * * Os_TE_687993 Chr11 19713588 19713587 - STOWAWAY12_OS 312 0.0007 (2/2954) 0 * * Os_TE_687988 Chr11 19710450 19710302 - STOWAWAY46_OS 154 0.6584 (1941/2948) 1 Intact * Os_TE_687983 Chr11 19708537 19708538 - ORSiTERTOOT00385 6000 0.0007 (1/1454) 0 * * Os_TE_687982 Chr11 19707427 19707198 - ORSgTEMT02400179 221 0.6541 (1959/2995) 1 Intact Os_TE_687980 Os_TE_687980 Chr11 19707193 19707418 - TYPEM 227 0.4648 (904/1945) 1 Intact Os_TE_687982 Os_TE_687970 Chr11 19700754 19700755 - SZ-22_LTR 4403 0.0003 (1/2972) 0 * Os_TE_687969 Os_TE_687969 Chr11 19700750 19700749 + ORSiTERTOOT00226 792 0.0003 (1/2984) 0 * Os_TE_687970 Os_TE_687967 Chr11 19700145 19700144 - SZ-67LTR 1540 0.0166 (49/2943) 0 * * Os_TE_687965 Chr11 19699685 19699686 - RIRE2_LTR 11306 0.0032 (9/2795) 0 * * Os_TE_687959 Chr11 19699381 19699229 + ORSgTEMT01701016 130 0.6847 (1991/2908) 1 Intact Os_TE_687957 Os_TE_687957 Chr11 19699236 19699381 + ORSgTEMT01701265 147 0.7090 (1981/2794) 1 Intact Os_TE_687959 Os_TE_687946 Chr11 19697602 19697603 + TRUNCATOR2_LTR 2904 0.0351 (83/2368) 0 * Os_TE_687945 Os_TE_687945 Chr11 19697598 19697597 - TRUNCATOR2_LTR 2904 0.0323 (93/2876) 0 * Os_TE_687946 Os_TE_687942 Chr11 19695984 19695985 - COPIA2-LTR_OS 6433 0.0012 (3/2606) 0 * Os_TE_687941 Os_TE_687941 Chr11 19695980 19695979 + COPIA2-LTR_OS 6433 0.0012 (3/2588) 0 * Os_TE_687942 Os_TE_687939 Chr11 19694551 19694550 - ORSgTEMT01601696 238 0.5109 (912/1785) 0 * * Os_TE_687932 Chr11 19693801 19693800 - COPIA1-LTR_OS 9292 0.0295 (53/1799) 0 * * Os_TE_687924 Chr11 19686318 19686078 - TREP215 239 0.8412 (805/957) 1 Intact * Os_TE_687920 Chr11 19685619 19685470 - ORSgTEMT00502293 151 0.5931 (809/1364) 1 Intact Os_TE_687919 Os_TE_687919 Chr11 19685467 19685616 - ORSgTEMT00500110 151 0.4114 (801/1947) 1 Intact Os_TE_687920 Os_TE_687916 Chr11 19684476 19684475 - MuDR2_OS 6770 0.0033 (3/907) 0 * * Os_TE_687905 Chr11 19680166 19680167 + NDNA1TNA_OS 334 0.2031 (569/2801) 0 * * Os_TE_687904 Chr11 19680082 19679855 + ORSgTEMT01400009 212 0.5379 (795/1478) 1 Intact * Os_TE_687898 Chr11 19679413 19679756 + OLO24 345 0.4086 (791/1936) 1 Intact * Os_TE_687897 Chr11 19679295 19679294 - DS-RICE4N 715 0.3234 (903/2792) 0 * * Os_TE_687894 Chr11 19678707 19678706 + ORSgTEMT04600010 284 0.3783 (1111/2937) 0 * * Os_TE_687893 Chr11 19678697 19678696 + STOWAWAY51_OS 246 0.0269 (51/1898) 0 * * Os_TE_687892 Chr11 19678691 19678692 - STOWAWAY51_OS 246 0.0224 (53/2371) 0 * * Os_TE_687891 Chr11 19678681 19678680 - MuDR-5_OS 17471 0.3485 (630/1808) 0 * * Os_TE_687889 Chr11 19678426 19678427 + ORSgTEMT03000039 377 0.0016 (3/1860) 0 * * Os_TE_687887 Chr11 19678115 19678116 - SINE03_OS 360 0.3972 (1163/2928) 0 * * Os_TE_687876 Chr11 19676377 19676378 - TYPEM 227 0.0007 (2/2963) 0 * Os_TE_687875 Os_TE_687875 Chr11 19676376 19676375 - ORSgTEMT02400179 221 0.0007 (2/2959) 0 * Os_TE_687876 Os_TE_687874 Chr11 19676277 19676276 + ORSgTEMT00502327 143 0.0091 (27/2965) 0 * Os_TE_687873 Os_TE_687873 Chr11 19676273 19676274 - ORSgTEMT00501504 140 0.0096 (27/2826) 0 * Os_TE_687874 Os_TE_687859 Chr11 19673773 19673772 - STOWAWAY51_OS 246 0.0007 (2/2900) 0 * Os_TE_687858 Os_TE_687858 Chr11 19673767 19673768 + STOWAWAY51_OS 246 0.0007 (2/2964) 0 * Os_TE_687859 Os_TE_687857 Chr11 19673609 19673610 + F569 228 0.1050 (152/1448) 0 * Os_TE_687856 Os_TE_687856 Chr11 19673607 19673606 - F569 228 0.0501 (149/2977) 0 * Os_TE_687857 Os_TE_687855 Chr11 19673579 19673580 + ORSgTETNOOT00072 203 0.5299 (1559/2942) 0 * * Os_TE_687854 Chr11 19673358 19673219 + ORSiTEMT03300001 145 0.4877 (1431/2934) 1 Intact * Os_TE_687852 Chr11 19673215 19673216 + F569 228 0.0007 (2/2922) 0 * * Os_TE_687821 Chr11 19666560 19666421 + ORSgTEMT00500201 140 0.4737 (1403/2962) 1 Intact Os_TE_687819 Os_TE_687819 Chr11 19666415 19666557 + ORSgTEMT00502327 143 0.4672 (1390/2975) 1 Intact Os_TE_687821 Os_TE_687817 Chr11 19664893 19664894 - OSTE9 421 0.0042 (6/1417) 0 * Os_TE_687816 Os_TE_687816 Chr11 19664889 19664888 + OSTE9 421 0.0007 (2/2980) 0 * Os_TE_687817 Os_TE_687815 Chr11 19664883 19664884 - ORSgTEMT00901363 251 0.5431 (1608/2961) 0 * * Os_TE_687814 Chr11 19664417 19664418 + RETROSAT3_LTR 11537 0.0878 (121/1378) 0 * Os_TE_687813 Os_TE_687813 Chr11 19664413 19664412 - RETROSAT2LTRA 3112 0.1119 (157/1403) 0 * Os_TE_687814 Os_TE_687809 Chr11 19661575 19661576 - RETRO2_LTR 12874 0.0014 (2/1430) 0 * * Os_TE_687769 Chr11 19636187 19636186 - RIRE2_LTR 11306 0.0008 (2/2586) 0 * * Os_TE_687768 Chr11 19635279 19635278 + ORSgTEMT01602413 239 0.0007 (2/2974) 0 * * Os_TE_687765 Chr11 19634241 19634242 - RETRO1_LTR 8314 0.0007 (2/2970) 0 * Os_TE_687764 Os_TE_687764 Chr11 19634237 19634236 + RETRO2A_LTR 12895 0.0007 (2/2969) 0 * Os_TE_687765 Os_TE_687763 Chr11 19634105 19634106 - COPI2_LTR 4733 0.0003 (1/2971) 0 * Os_TE_687762 Os_TE_687762 Chr11 19634101 19634100 + COPI2_LTR 4733 0.0003 (1/2975) 0 * Os_TE_687763 Os_TE_687749 Chr11 19627426 19627427 - OSR3_LTR 5201 0.3162 (942/2979) 0 * Os_TE_687748 Os_TE_687748 Chr11 19627419 19627418 + OSR3_LTR 5201 0.3201 (956/2987) 0 * Os_TE_687749 Os_TE_687744 Chr11 19626608 19626609 - ORSgTEMT00600085 364 0.0020 (6/2993) 0 * Os_TE_687743 Os_TE_687743 Chr11 19626606 19626605 + CASTAWAY 364 0.0023 (7/2994) 0 * Os_TE_687744 Os_TE_687739 Chr11 19623540 19623541 - ORSgTERT00200916 5990 0.0005 (1/2051) 0 * * Os_TE_687730 Chr11 19620726 19620725 + STOWAWAY15-2_OS 145 0.3234 (962/2975) 0 * * Os_TE_687707 Chr11 19614882 19614881 - TYPEM 227 0.0022 (6/2749) 0 * * Os_TE_687705 Chr11 19614026 19614027 + ORSgTEMT01600421 237 0.0010 (3/2885) 0 * * Os_TE_687673 Chr11 19602977 19602978 - NDNA1TNA_OS 334 0.0007 (2/2982) 0 * * Os_TE_687672 Chr11 19602951 19602952 + MuDR4_OS 7610 0.0124 (37/2981) 0 * * Os_TE_687664 Chr11 19602104 19602105 + RIREX_LTR 8828 0.0007 (2/2985) 0 * Os_TE_687663 Os_TE_687663 Chr11 19602100 19602099 - RIREX_LTR 8828 0.0007 (2/2985) 0 * Os_TE_687664 Os_TE_687649 Chr11 19600874 19600875 + RETRO2A_LTR 12895 0.0003 (1/2982) 0 * Os_TE_687648 Os_TE_687648 Chr11 19600870 19600869 - RETRO2A_LTR 12895 0.0003 (1/2976) 0 * Os_TE_687649 Os_TE_687633 Chr11 19591866 19591867 + OLO24 345 0.0027 (8/2994) 0 * * Os_TE_687618 Chr11 19577340 19577341 - INDITTO 263 0.0010 (3/2985) 0 * Os_TE_687617 Os_TE_687617 Chr11 19577338 19577337 + INDITTO 263 0.0010 (3/2982) 0 * Os_TE_687618 Os_TE_687586 Chr11 19560612 19560613 + AMYLTP 383 0.0077 (23/2972) 0 * Os_TE_687585 Os_TE_687585 Chr11 19560604 19560603 - AMYLTP 383 0.0081 (24/2974) 0 * Os_TE_687586 Os_TE_687581 Chr11 19559772 19559771 - ORSgTEMT01701850 150 0.0004 (1/2662) 0 * * Os_TE_687579 Chr11 19559545 19559546 + RIREX_LTR 8828 0.0007 (2/2840) 0 * Os_TE_687578 Os_TE_687578 Chr11 19559541 19559540 - RIREX_LTR 8828 0.0007 (2/2842) 0 * Os_TE_687579 Os_TE_687500 Chr11 19534926 19534925 + ORSgTEMT01601591 242 0.0004 (1/2374) 0 * * Os_TE_687493 Chr11 19529458 19529459 - INDITTO 263 0.4693 (1377/2934) 0 * Os_TE_687492 Os_TE_687492 Chr11 19529456 19529455 + INDITTO 263 0.4801 (1421/2960) 0 * Os_TE_687493 Os_TE_687478 Chr11 19525257 19525258 - COPI2_LTR 4733 0.0003 (1/2986) 0 * Os_TE_687477 Os_TE_687477 Chr11 19525253 19525252 + COPI2_LTR 4733 0.0003 (1/2979) 0 * Os_TE_687478 Os_TE_687476 Chr11 19524426 19524427 + ORSgTERT00201027 424 0.0034 (10/2916) 0 * * Os_TE_687473 Chr11 19522055 19522054 + ORSgTEMT01602181 239 0.0031 (8/2588) 0 * Os_TE_687472 Os_TE_687472 Chr11 19522052 19522053 - ORSgTEMT01601432 239 0.0023 (6/2586) 0 * Os_TE_687473 Os_TE_687465 Chr11 19510439 19510440 - TELIA 141 0.0004 (1/2401) 0 * * Os_TE_687464 Chr11 19510135 19510136 - GYPSY-A_LTR 8951 0.0010 (1/1012) 0 * * Os_TE_687451 Chr11 19505832 19505833 + ORSiTERTOOT00350 5275 0.0271 (81/2984) 0 * Os_TE_687450 Os_TE_687450 Chr11 19505828 19505827 - ORSiTERTOOT00350 5275 0.0268 (80/2990) 0 * Os_TE_687451 Os_TE_687448 Chr11 19505399 19505400 + OLO24 345 0.0003 (1/2993) 0 * * Os_TE_687445 Chr11 19503196 19503195 - ORSgTEMT02600002 356 0.0024 (7/2940) 0 * Os_TE_687444 Os_TE_687444 Chr11 19503186 19503187 - ORSgTEMT00101174 225 0.0007 (2/2932) 0 * Os_TE_687445 Os_TE_687438 Chr11 19500423 19500424 - ORSiTERTOOT00402 2660 0.0164 (49/2984) 0 * Os_TE_687437 Os_TE_687437 Chr11 19500419 19500418 + ORSiTERTOOT00402 2660 0.0164 (49/2982) 0 * Os_TE_687438 Os_TE_687424 Chr11 19492339 19492338 + RETROSAT4_LTR 13504 0.0008 (2/2633) 0 * * Os_TE_687421 Chr11 19492065 19492064 - COPIA2-LTR_OS 6433 0.0004 (1/2795) 0 * * Os_TE_687412 Chr11 19481694 19481693 - TRUNCATOR2_LTR 2904 0.0004 (1/2498) 0 * * Os_TE_687402 Chr11 19477629 19477630 - COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * * Os_TE_687389 Chr11 19474176 19474177 - ORSgTEMT00900293 223 0.0034 (10/2909) 0 * * Os_TE_687302 Chr11 19447682 19447683 + RIRE2_LTR 11306 0.0206 (46/2235) 0 * Os_TE_687301 Os_TE_687301 Chr11 19447678 19447677 - RIRE2_LTR 11306 0.0216 (48/2220) 0 * Os_TE_687302 Os_TE_687287 Chr11 19443175 19443176 - RETRO1_LTR 8314 0.0070 (21/2982) 0 * * Os_TE_687279 Chr11 19442029 19442030 + ORSgTETNOOT01998 254 0.0013 (4/2994) 0 * Os_TE_687278 Os_TE_687278 Chr11 19442027 19442026 + ORSgTETNOOT01834 251 0.0013 (4/2994) 0 * Os_TE_687279 Os_TE_687276 Chr11 19440205 19440206 + TWIF 586 0.0007 (2/2995) 0 * Os_TE_687275 Os_TE_687275 Chr11 19440198 19440197 - ORSiTETNOOT00134 607 0.0007 (2/2995) 0 * Os_TE_687276 Os_TE_687273 Chr11 19438549 19438550 + ORSiTERTOOT00296 5553 0.0003 (1/2952) 0 * Os_TE_687272 Os_TE_687272 Chr11 19438545 19438544 - SC-3_LTR 5748 0.0003 (1/2952) 0 * Os_TE_687273 Os_TE_687259 Chr11 19432018 19432017 - ORSgTEMT00200082 142 0.0004 (1/2333) -1 * * Os_TE_687162 Chr11 19374019 19374020 - MuDR2_OS 6770 0.0007 (2/2853) 0 * Os_TE_687161 Os_TE_687161 Chr11 19374010 19374009 + MuDR2_OS 6770 0.0007 (2/2868) 0 * Os_TE_687162 Os_TE_687148 Chr11 19370185 19370186 + COPIA2-LTR_OS 6433 0.0014 (4/2826) 0 * * Os_TE_687143 Chr11 19365214 19365215 + STOWAWAY1_OS 149 0.0021 (2/940) 0 * * Os_TE_687141 Chr11 19363279 19363280 + RETRO1_LTR 8314 0.0087 (8/921) 0 * Os_TE_687140 Os_TE_687140 Chr11 19363275 19363274 - RETRO1_LTR 8314 0.0087 (8/921) 0 * Os_TE_687141 Os_TE_687116 Chr11 19350100 19350099 + SEVERIN-2 1952 0.0003 (1/2959) 0 * * Os_TE_687114 Chr11 19349273 19349274 + RIREX_LTR 8828 0.0010 (3/2926) 0 * * Os_TE_687095 Chr11 19343509 19343510 + COPI2_LTR 4733 0.0014 (4/2957) 0 * * Os_TE_687086 Chr11 19343056 19343057 + AMYLTP 383 0.6318 (1874/2966) 0 * Os_TE_687085 Os_TE_687085 Chr11 19343048 19343047 - AMYLTP 383 0.6009 (1682/2799) 0 * Os_TE_687086 Os_TE_687084 Chr11 19342978 19342979 + INDITTO 263 0.1045 (120/1148) 0 * Os_TE_687083 Os_TE_687083 Chr11 19342976 19342975 - INDITTO 263 0.0395 (117/2964) 0 * Os_TE_687084 Os_TE_687068 Chr11 19337303 19336547 - ORSiTEMT01300001 950 0.5523 (1646/2980) 1 Intact Os_TE_687066 Os_TE_687066 Chr11 19336546 19337302 + KRISPIE 956 0.5485 (1633/2977) 1 Intact Os_TE_687068 Os_TE_687007 Chr11 19321378 19321379 + SPMLIKE 10989 0.0003 (1/2983) 0 * * Os_TE_687001 Chr11 19320711 19320712 + RIRE2_LTR 11306 0.1066 (316/2965) 0 * Os_TE_687000 Os_TE_687000 Chr11 19320707 19320706 - RIRE2_LTR 11306 0.1103 (327/2964) 0 * Os_TE_687001 Os_TE_686975 Chr11 19312344 19312345 + RIRE2_LTR 11306 0.0101 (30/2983) 0 * Os_TE_686974 Os_TE_686974 Chr11 19312340 19312339 - RIRE2_LTR 11306 0.0136 (31/2273) 0 * Os_TE_686975 Os_TE_686966 Chr11 19310585 19310586 - ORSgTERT00201216 11284 0.0179 (53/2962) 0 * Os_TE_686965 Os_TE_686965 Chr11 19310581 19310580 - RIRE2_LTR 11306 0.0179 (53/2960) 0 * Os_TE_686966 Os_TE_686957 Chr11 19308990 19308991 - RETROSAT2LTRA 3112 0.0669 (197/2945) 0 * * Os_TE_686954 Chr11 19307742 19307741 - TRUNCATOR 2918 0.0014 (4/2847) 0 * Os_TE_686953 Os_TE_686953 Chr11 19307741 19307742 + TRUNCATOR 2918 0.0014 (4/2861) 0 * Os_TE_686954 Os_TE_686917 Chr11 19294480 19294481 - RIRE3_LTR 12054 0.0034 (10/2916) 0 * Os_TE_686916 Os_TE_686916 Chr11 19294476 19294475 + RIRE3_LTR 12054 0.0027 (8/2918) 0 * Os_TE_686917 Os_TE_686909 Chr11 19293086 19293085 + TRUNCATOR 2918 0.1476 (436/2953) 0 * Os_TE_686908 Os_TE_686908 Chr11 19293085 19293086 - TRUNCATOR 2918 0.1402 (412/2938) 0 * Os_TE_686909 Os_TE_686903 Chr11 19290806 19290805 + SZ-62LTR 3649 0.0020 (6/2997) 0 * * Os_TE_686899 Chr11 19289941 19289942 + TRUNCATOR 2918 0.0405 (121/2991) 0 * * Os_TE_686875 Chr11 19282419 19282420 + ORSgTETN00200005 1121 0.0007 (2/2965) 0 * * Os_TE_686856 Chr11 19276619 19276618 + SPMLIKE 10989 0.0005 (1/1855) 0 * * Os_TE_686853 Chr11 19274707 19274706 - ORSgTETN00200001 10994 0.0164 (49/2984) 0 * Os_TE_686852 Os_TE_686852 Chr11 19274691 19274692 + SPMLIKE 10989 0.0158 (47/2978) 0 * Os_TE_686853 Os_TE_686848 Chr11 19272889 19272890 + RETROSAT4_LTR 13504 0.0128 (38/2975) 0 * Os_TE_686847 Os_TE_686847 Chr11 19272885 19272884 - SZ-35LTR 3853 0.0127 (38/2982) 0 * Os_TE_686848 Os_TE_686838 Chr11 19268573 19268574 - ORSgTEMT00700002 381 0.0003 (1/2937) 0 * Os_TE_686837 Os_TE_686837 Chr11 19268572 19268571 + MUDRN5_OS 374 0.0003 (1/2932) 0 * Os_TE_686838 Os_TE_686824 Chr11 19263171 19263172 + TRUNCATOR 2918 0.0003 (1/2989) 0 * * Os_TE_686821 Chr11 19259613 19259614 + AMYLTP 383 0.0023 (7/2994) 0 * Os_TE_686820 Os_TE_686820 Chr11 19259605 19259604 - AMYLTP 383 0.0023 (7/2992) 0 * Os_TE_686821 Os_TE_686738 Chr11 19229166 19229167 - INDITTO 263 0.0034 (10/2975) 0 * Os_TE_686737 Os_TE_686737 Chr11 19229164 19229163 - INDITTO 263 0.0034 (10/2974) 0 * Os_TE_686738 Os_TE_686736 Chr11 19229082 19229083 - INDITTO 263 0.0010 (3/2988) 0 * Os_TE_686735 Os_TE_686735 Chr11 19229080 19229079 + ORSgTETNOOT02316 263 0.0010 (3/2988) 0 * Os_TE_686736 Os_TE_686717 Chr11 19221850 19221851 - TRUNCATOR 2918 0.0007 (2/2703) 0 * * Os_TE_686687 Chr11 19208635 19208634 + RIRE2_LTR 11306 0.0076 (22/2904) 0 * * Os_TE_686683 Chr11 19206925 19206926 - ORSgTERT00201216 11284 0.0114 (34/2977) 0 * * Os_TE_686653 Chr11 19195928 19195929 + ORSgTEMT00901798 232 0.0024 (7/2977) 0 * * Os_TE_686652 Chr11 19194109 19194108 + SEVERIN-2 1952 0.0281 (84/2991) 0 * * Os_TE_686617 Chr11 19173672 19173673 + SC-8_LTR 4951 0.0003 (1/2995) 0 * Os_TE_686616 Os_TE_686616 Chr11 19173668 19173667 - SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_686617 Os_TE_686615 Chr11 19173588 19173589 - STOLAB 312 0.5625 (1669/2967) 0 * Os_TE_686614 Os_TE_686614 Chr11 19173586 19173585 + STOLAB 312 0.5644 (1686/2987) 0 * Os_TE_686615 Os_TE_686612 Chr11 19172310 19172311 + ORSgTEMT01701101 133 0.5681 (1701/2994) 0 * * Os_TE_686602 Chr11 19164804 19164805 + TWIFBIG 3567 0.0676 (193/2857) 0 * Os_TE_686601 Os_TE_686601 Chr11 19164797 19164796 - ORSiTETNOOT00216 3569 0.0781 (227/2907) 0 * Os_TE_686602 Os_TE_686572 Chr11 19151094 19150694 + OLO24B 335 0.4286 (1258/2935) 1 Intact * Os_TE_686558 Chr11 19149032 19149033 + SZ-55_LTR 10318 0.5836 (1735/2973) 0 * * Os_TE_686556 Chr11 19148810 19148811 + SINE03_OS 360 0.5685 (1640/2885) 0 * * Os_TE_686555 Chr11 19148729 19148728 + RIREX_LTR 8828 0.6034 (1742/2887) 0 * * Os_TE_686550 Chr11 19145265 19145266 - OSTE33 1012 0.0040 (5/1259) 0 * Os_TE_686549 Os_TE_686549 Chr11 19145256 19145255 - OSTE33 1012 0.0040 (5/1255) 0 * Os_TE_686550 Os_TE_686547 Chr11 19137553 19145216 - MuDR3_OS 8604 0.4063 (1186/2919) 1 Intact * Os_TE_686546 Chr11 19134221 19134220 + F569 228 0.0024 (7/2968) 0 * * Os_TE_686545 Chr11 19131318 19131319 - ORSgTEMT02400179 221 0.0055 (16/2933) 0 * Os_TE_686544 Os_TE_686544 Chr11 19131317 19131316 - TYPEM 227 0.0061 (18/2938) 0 * Os_TE_686545 Os_TE_686535 Chr11 19125516 19125517 + ORSiTERTOOT00296 5553 0.0024 (7/2976) 0 * Os_TE_686534 Os_TE_686534 Chr11 19125512 19125511 - SC-3_LTR 5748 0.0024 (7/2975) 0 * Os_TE_686535 Os_TE_686527 Chr11 19120928 19120929 + ORSiCMCM00100019 2717 0.4841 (1443/2981) 0 * Os_TE_686526 Os_TE_686526 Chr11 19120925 19120924 - TRUNCATOR2_LTR 2904 0.4871 (1456/2989) 0 * Os_TE_686527 Os_TE_686505 Chr11 19116771 19116770 - F569 228 0.0104 (29/2787) 0 * Os_TE_686504 Os_TE_686504 Chr11 19116761 19116762 + F569 228 0.0105 (30/2860) 0 * Os_TE_686505 Os_TE_686502 Chr11 19116122 19116121 + ORSgTEMT00100496 339 0.0024 (7/2925) 0 * * Os_TE_686494 Chr11 19110341 19110342 + RIRE2_LTR 11306 0.0042 (11/2633) -1 * * Os_TE_686492 Chr11 19109782 19109783 - SZ-67LTR 1540 0.0007 (2/2961) 0 * Os_TE_686491 Os_TE_686491 Chr11 19109778 19109777 + SZ-67LTR 1540 0.0007 (2/2964) 0 * Os_TE_686492 Os_TE_686485 Chr11 19104113 19104114 + ORSiTERTOOT00097 759 0.0040 (12/2998) 0 * Os_TE_686484 Os_TE_686484 Chr11 19104109 19104108 - SZ-22_LTR 4403 0.0040 (12/2990) 0 * Os_TE_686485 Os_TE_686458 Chr11 19095215 19095216 + AMYLTP 383 0.0037 (11/2983) 0 * Os_TE_686457 Os_TE_686457 Chr11 19095207 19095206 - AMYLTP 383 0.0034 (10/2982) 0 * Os_TE_686458 Os_TE_686422 Chr11 19083400 19083399 - OSCOPIA2_LTR 5476 0.0004 (1/2441) 0 * * Os_TE_686412 Chr11 19076332 19076331 - ORSgTEMT01600768 234 0.0003 (1/2886) 0 * * Os_TE_686403 Chr11 19070945 19070946 + ORSiTERTOOT00296 5553 0.0017 (5/2982) 0 * Os_TE_686402 Os_TE_686402 Chr11 19070941 19070940 - SC-3_LTR 5748 0.0017 (5/2985) 0 * Os_TE_686403 Os_TE_686401 Chr11 19069327 19069328 - SZ-7A_LTR 11400 0.0004 (1/2657) 0 * * Os_TE_686374 Chr11 19058194 19058195 + NDNA1TNA_OS 334 0.0491 (144/2935) 0 * Os_TE_686373 Os_TE_686373 Chr11 19058192 19058191 - NDNA1TNA_OS 334 0.0506 (150/2963) 0 * Os_TE_686374 Os_TE_686365 Chr11 19055737 19055738 + AMYLTP 383 0.1260 (372/2953) 0 * Os_TE_686364 Os_TE_686364 Chr11 19055729 19055728 - AMYLTP 383 0.1282 (379/2957) 0 * Os_TE_686365 Os_TE_686339 Chr11 19047566 19047567 + ORSiTETNOOT00147 3619 0.0023 (7/2980) 0 * Os_TE_686338 Os_TE_686338 Chr11 19047559 19047558 - ORSiTETNOOT00147 3619 0.0020 (6/2986) 0 * Os_TE_686339 Os_TE_686318 Chr11 19043071 19043070 - ORSgTEMT01601432 239 0.1080 (312/2889) 0 * * Os_TE_686306 Chr11 19040705 19040704 + ORSgTEMT00600272 361 0.0034 (10/2982) 0 * * Os_TE_686209 Chr11 19000867 19000868 - ORSiCMCM00100014 10855 0.0004 (1/2354) 0 * * Os_TE_686195 Chr11 18992146 18992384 - ORSgTEMT01601432 239 0.2702 (799/2957) 1 Intact * Os_TE_686179 Chr11 18988694 18988693 + SZ-67LTR 1540 0.0017 (5/2994) 0 * * Os_TE_686174 Chr11 18984091 18984092 - SC-3_LTR 5748 0.0003 (1/2983) 0 * Os_TE_686173 Os_TE_686173 Chr11 18984087 18984086 + ORSiTERTOOT00296 5553 0.0003 (1/2976) 0 * Os_TE_686174 Os_TE_686170 Chr11 18981804 18981803 + MDR2 6967 0.0053 (14/2651) 0 * * Os_TE_686167 Chr11 18981368 18981369 - ORSiTETNOOT00156 3648 0.0177 (50/2825) 0 * Os_TE_686166 Os_TE_686166 Chr11 18981361 18981360 + TWIF 586 0.0193 (55/2844) 0 * Os_TE_686167 Os_TE_686145 Chr11 18977952 18977951 - SZ-22_LTR 4403 0.2557 (766/2996) 0 * * Os_TE_686143 Chr11 18977571 18966555 - ORSgTETN00200001 10994 0.0594 (177/2981) 1 Intact Os_TE_686137 Os_TE_686137 Chr11 18966556 18977571 + SPMLIKE 10989 0.0530 (157/2960) 1 Intact Os_TE_686143 Os_TE_686121 Chr11 18963769 18962400 + ORSgTETN00200005 1121 0.0579 (172/2973) 1 Intact * Os_TE_686119 Chr11 18962059 18962060 + ORSgTETNOOT01219 231 0.0962 (285/2963) 0 * Os_TE_686118 Os_TE_686118 Chr11 18962054 18962053 + ORSgTETNOOT00908 242 0.0973 (289/2969) 0 * Os_TE_686119 Os_TE_686116 Chr11 18961401 18961402 - INDITTO 263 0.0007 (2/2952) 0 * Os_TE_686115 Os_TE_686115 Chr11 18961399 18961398 + INDITTO 263 0.0007 (2/2946) 0 * Os_TE_686116 Os_TE_686071 Chr11 18951895 18951896 + MPING 430 0.0060 (18/2988) 0 * Os_TE_686070 Os_TE_686070 Chr11 18951893 18951892 - MPING 430 0.0064 (19/2982) 0 * Os_TE_686071 Os_TE_686063 Chr11 18950223 18950224 - DS-RICE2N 613 0.0105 (31/2964) 0 * Os_TE_686062 Os_TE_686062 Chr11 18950216 18950215 + DS-RICE2N 613 0.0105 (31/2964) 0 * Os_TE_686063 Os_TE_686051 Chr11 18949186 18949185 + COPI2_LTR 4733 0.0003 (1/2909) 0 * * Os_TE_686050 Chr11 18948711 18948710 - NDNA1TNA_OS 334 0.0064 (19/2959) 0 * * Os_TE_686038 Chr11 18945206 18945207 - RETROSAT2LTR 12796 0.0007 (2/2701) 0 * * Os_TE_686034 Chr11 18943540 18943541 + ORSgTETNOOT00908 242 0.0157 (45/2875) -1 * * Os_TE_685992 Chr11 18928303 18928304 + STOWAWAY10_OS 259 0.0003 (1/2949) 0 * * Os_TE_685964 Chr11 18916769 18917993 + CACTA-D 1038 0.3435 (1006/2929) 1 Intact * Os_TE_685956 Chr11 18914017 18914016 - RETRO1_LTR 8314 0.0017 (5/2918) 0 * * Os_TE_685939 Chr11 18909509 18909510 + ORSgTEMT01601591 242 0.0003 (1/2982) 0 * * Os_TE_685925 Chr11 18906935 18906936 - RIREX_LTR 8828 0.0011 (3/2785) 0 * Os_TE_685924 Os_TE_685924 Chr11 18906931 18906930 + RIREX_LTR 8828 0.0011 (3/2798) 0 * Os_TE_685925 Os_TE_685910 Chr11 18902615 18902614 + MERMITEA 1710 0.0382 (114/2983) 0 * * Os_TE_685872 Chr11 18886501 18886502 - COPI2_LTR 4733 0.0007 (2/2954) 0 * Os_TE_685871 Os_TE_685871 Chr11 18886497 18886496 + COPI2_LTR 4733 0.0007 (2/2952) 0 * Os_TE_685872 Os_TE_685854 Chr11 18881535 18881536 - TRUNCATOR2_LTR 2904 0.0074 (22/2992) 0 * Os_TE_685853 Os_TE_685853 Chr11 18881531 18881530 + ORSiTERTOOT00028 8600 0.0077 (23/2993) 0 * Os_TE_685854 Os_TE_685850 Chr11 18880328 18880327 - GYPSY-A_LTR 8951 0.0010 (3/2989) 0 * * Os_TE_685849 Chr11 18879320 18879321 - RIRE2_LTR 11306 0.0072 (21/2918) 0 * Os_TE_685848 Os_TE_685848 Chr11 18879316 18879315 - ORSgTERT00201216 11284 0.0074 (22/2981) 0 * Os_TE_685849 Os_TE_685845 Chr11 18879133 18879134 - ORSgTETN00200001 10994 0.1614 (468/2899) 0 * Os_TE_685844 Os_TE_685844 Chr11 18879131 18879130 + SPMLIKE 10989 0.1635 (476/2911) 0 * Os_TE_685845 Os_TE_685841 Chr11 18878622 18878623 - ORSgTETN00200001 10994 0.0007 (2/2981) 0 * * Os_TE_685839 Chr11 18876902 18876903 - RIRE2_LTR 11306 0.0021 (6/2842) 0 * Os_TE_685838 Os_TE_685838 Chr11 18876898 18876897 - ORSgTERT00201216 11284 0.0021 (6/2875) 0 * Os_TE_685839 Os_TE_685809 Chr11 18871540 18871541 - ORSiTERT00200154 9386 0.0084 (25/2976) 0 * Os_TE_685808 Os_TE_685808 Chr11 18871534 18871533 + TRUNCATOR 2918 0.0087 (26/2973) 0 * Os_TE_685809 Os_TE_685779 Chr11 18863660 18863661 + COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_685778 Os_TE_685778 Chr11 18863656 18863655 - COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * Os_TE_685779 Os_TE_685743 Chr11 18845650 18845651 + RIRE2_LTR 11306 0.0064 (19/2970) 0 * Os_TE_685742 Os_TE_685742 Chr11 18845646 18845645 - RIRE2_LTR 11306 0.0067 (20/2981) 0 * Os_TE_685743 Os_TE_685725 Chr11 18839056 18839057 - SZ-67LTR 1540 0.0144 (41/2851) 0 * * Os_TE_685706 Chr11 18836627 18836626 - DITTO 244 0.0003 (1/2970) 0 * * Os_TE_685680 Chr11 18827299 18827300 - MPING 430 0.0003 (1/2947) 0 * Os_TE_685679 Os_TE_685679 Chr11 18827297 18827296 + MPING 430 0.0003 (1/2973) 0 * Os_TE_685680 Os_TE_685675 Chr11 18826309 18826310 + ORSgTERTOOT00009 12852 0.0610 (182/2985) 0 * Os_TE_685674 Os_TE_685674 Chr11 18826305 18826304 - RETRO2_LTR 12874 0.0593 (177/2986) 0 * Os_TE_685675 Os_TE_685642 Chr11 18818581 18818580 - NDNA1TNA_OS 334 0.0364 (109/2996) 0 * * Os_TE_685641 Chr11 18818396 18820506 - CACTA-H 1152 0.2897 (868/2996) 1 Intact * Os_TE_685638 Chr11 18817539 18817540 - HARB-1_OS 5166 0.0037 (11/2993) 0 * Os_TE_685637 Os_TE_685637 Chr11 18817537 18817536 + HARB-1_OS 5166 0.0037 (11/2995) 0 * Os_TE_685638 Os_TE_685610 Chr11 18811713 18811714 + ORSgTETNOOT00908 242 0.0068 (19/2805) 0 * Os_TE_685609 Os_TE_685609 Chr11 18811709 18811708 + ORSgTETNOOT01219 231 0.0071 (20/2802) 0 * Os_TE_685610 Os_TE_685607 Chr11 18811148 18811147 + CASTAWAY 364 0.0011 (3/2829) 0 * * Os_TE_685587 Chr11 18807757 18807758 - RIREX_LTR 8828 0.0027 (8/2969) 0 * Os_TE_685586 Os_TE_685586 Chr11 18807753 18807752 + RIREX_LTR 8828 0.0027 (8/2979) 0 * Os_TE_685587 Os_TE_685584 Chr11 18806496 18806497 + RETRO2_LTR 12874 0.0594 (177/2982) 0 * Os_TE_685583 Os_TE_685583 Chr11 18806492 18806491 - RETRO2_LTR 12874 0.0591 (177/2993) 0 * Os_TE_685584 Os_TE_685574 Chr11 18803650 18803651 + COPI2_LTR 4733 0.0003 (1/2976) 0 * Os_TE_685573 Os_TE_685573 Chr11 18803646 18803645 - COPI2_LTR 4733 0.0003 (1/2976) 0 * Os_TE_685574 Os_TE_685533 Chr11 18790949 18790948 + RIRE2_LTR 11306 0.2020 (599/2965) 0 * * Os_TE_685512 Chr11 18789364 18789365 - ORSgTEMT02400179 221 0.0057 (17/2987) 0 * Os_TE_685511 Os_TE_685511 Chr11 18789363 18789362 - TYPEM 227 0.0060 (18/2987) 0 * Os_TE_685512 Os_TE_685490 Chr11 18780365 18780364 + MPING 430 0.0029 (8/2731) 0 * * Os_TE_685471 Chr11 18777564 18777563 + F770 284 0.0007 (2/2981) 0 * * Os_TE_685459 Chr11 18773381 18773380 + ORSiTERTOOT00028 8600 0.0272 (80/2937) 0 * * Os_TE_685458 Chr11 18772009 18772010 - COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_685457 Os_TE_685457 Chr11 18772005 18772004 + COPI2_LTR 4733 0.0003 (1/2997) 0 * Os_TE_685458 Os_TE_685443 Chr11 18769127 18769128 + RETRO2_LTR 12874 0.0367 (110/2994) 0 * * Os_TE_685441 Chr11 18768516 18768517 - RIRE2_LTR 11306 0.0050 (15/2987) 0 * * Os_TE_685431 Chr11 18767028 18754142 + RETRO2_LTR 12874 0.3213 (959/2985) 1 Intact Os_TE_685399 Os_TE_685399 Chr11 18754142 18767028 - RETRO2_LTR 12874 0.3231 (966/2990) 1 Intact Os_TE_685431 Os_TE_685391 Chr11 18752833 18752832 + ORSgTEMT00100531 325 0.0305 (91/2986) 0 * Os_TE_685390 Os_TE_685390 Chr11 18752826 18752827 + NDNA1TNA_OS 334 0.0298 (89/2991) 0 * Os_TE_685391 Os_TE_685376 Chr11 18747720 18747719 + INDITTO 263 0.0794 (226/2846) 0 * * Os_TE_685366 Chr11 18739586 18739587 + CLOUD-7 495 0.0004 (1/2643) 0 * * Os_TE_685334 Chr11 18733847 18733846 + HARB-1_OS 5166 0.0101 (30/2985) 0 * * Os_TE_685300 Chr11 18721564 18721565 - INDITTO 263 0.0014 (4/2948) 0 * Os_TE_685299 Os_TE_685299 Chr11 18721562 18721561 + INDITTO 263 0.0014 (3/2216) 0 * Os_TE_685300 Os_TE_685294 Chr11 18720334 18720698 - CASTAWAY 364 0.6911 (2031/2939) 1 Intact * Os_TE_685281 Chr11 18709292 18704626 - OSTE33 1012 0.3162 (931/2944) 1 Intact Os_TE_685275 Os_TE_685275 Chr11 18704627 18709292 - OSTE33 1012 0.3295 (983/2983) 1 Intact Os_TE_685281 Os_TE_685260 Chr11 18697519 18697520 + OSR3_LTR 5201 0.0007 (2/2996) 0 * Os_TE_685259 Os_TE_685259 Chr11 18697515 18697514 - OSR3_LTR 5201 0.0007 (2/2994) 0 * Os_TE_685260 Os_TE_685255 Chr11 18695310 18695311 + NDNA1TNA_OS 334 0.0023 (7/2982) 0 * * Os_TE_685252 Chr11 18695225 18695224 + DS-RICE4N 715 0.1885 (557/2955) 0 * * Os_TE_685249 Chr11 18694087 18694088 - SC-3_LTR 5748 0.0102 (30/2939) 0 * Os_TE_685248 Os_TE_685248 Chr11 18694083 18694082 + ORSiTERTOOT00296 5553 0.0105 (31/2939) 0 * Os_TE_685249 Os_TE_685247 Chr11 18693336 18693337 + ORSiTERTOOT00296 5553 0.0035 (10/2896) 0 * Os_TE_685246 Os_TE_685246 Chr11 18693332 18693331 - SC-3_LTR 5748 0.0035 (10/2886) 0 * Os_TE_685247 Os_TE_685225 Chr11 18686441 18686440 + ORSgTEMT00600192 355 0.2188 (651/2976) 0 * * Os_TE_685193 Chr11 18676532 18676533 + RIREX_LTR 8828 0.0009 (2/2344) 0 * * Os_TE_685191 Chr11 18675866 18675867 + COPI2_LTR 4733 0.0479 (113/2359) 0 * Os_TE_685190 Os_TE_685190 Chr11 18675862 18675861 - COPI2_LTR 4733 0.0481 (114/2368) 0 * Os_TE_685191 Os_TE_685154 Chr11 18668384 18668383 - RETRO2A_LTR 12895 0.0047 (11/2333) 0 * * Os_TE_685141 Chr11 18666953 18666952 + RIREX_LTR 8828 0.0042 (10/2388) 0 * * Os_TE_685140 Chr11 18666737 18666738 - COPIA2-LTR_OS 6433 0.0004 (1/2388) 0 * Os_TE_685139 Os_TE_685139 Chr11 18666733 18666732 + COPIA2-LTR_OS 6433 0.0004 (1/2388) 0 * Os_TE_685140 Os_TE_685125 Chr11 18660797 18660798 - COPIA2-LTR_OS 6433 0.0024 (7/2974) 0 * Os_TE_685124 Os_TE_685124 Chr11 18660793 18660792 + COPIA2-LTR_OS 6433 0.0020 (6/2980) 0 * Os_TE_685125 Os_TE_685122 Chr11 18659915 18659916 - COPIA1-LTR_OS 9292 0.2239 (668/2984) 0 * Os_TE_685121 Os_TE_685121 Chr11 18659911 18659910 + COPIA1-LTR_OS 9292 0.2240 (667/2978) 0 * Os_TE_685122 Os_TE_685111 Chr11 18652835 18652834 - TRUNCATOR 2918 0.2017 (583/2890) 0 * Os_TE_685110 Os_TE_685110 Chr11 18652834 18652835 + TRUNCATOR 2918 0.2165 (633/2924) 0 * Os_TE_685111 Os_TE_685088 Chr11 18648637 18648636 - INDITTO 263 0.0010 (3/2973) 0 * * Os_TE_685086 Chr11 18647843 18647844 + SC-3_LTR 5748 0.0023 (7/2981) 0 * Os_TE_685085 Os_TE_685085 Chr11 18647839 18647838 - SC-3_LTR 5748 0.0023 (7/2984) 0 * Os_TE_685086 Os_TE_685084 Chr11 18647500 18647501 - SC-8_LTR 4951 0.0003 (1/2989) 0 * Os_TE_685083 Os_TE_685083 Chr11 18647496 18647495 + ORSiTERTOOT00381 4988 0.0003 (1/2985) 0 * Os_TE_685084 Os_TE_685067 Chr11 18638302 18638303 - SC-3_LTR 5748 0.2217 (661/2982) 0 * * Os_TE_685063 Chr11 18636370 18636371 - ORSiTETNOOT00216 3569 0.0008 (2/2367) 0 * * Os_TE_685060 Chr11 18636183 18636329 + TNR2A 152 0.7980 (2311/2896) 1 Intact * Os_TE_685059 Chr11 18636099 18636100 - CENTRE 280 0.0009 (2/2339) 0 * * Os_TE_685053 Chr11 18635268 18627578 + MDR2 6967 0.3968 (1177/2966) 1 Intact Os_TE_685048 Os_TE_685048 Chr11 18627578 18635268 - MDR2 6967 0.3973 (1180/2970) 1 Intact Os_TE_685053 Os_TE_685047 Chr11 18626130 18626131 - MuDR4_OS 7610 0.2400 (590/2458) 0 * Os_TE_685046 Os_TE_685046 Chr11 18626124 18626123 - MuDR4_OS 7610 0.1994 (590/2959) 0 * Os_TE_685047 Os_TE_685045 Chr11 18626116 18626117 + SPMLIKE 10989 0.1834 (543/2961) 0 * Os_TE_685044 Os_TE_685044 Chr11 18626114 18626113 - ORSgTETN00200001 10994 0.2197 (532/2422) 0 * Os_TE_685045 Os_TE_685038 Chr11 18623306 18623307 + NDNA1TNA_OS 334 0.0007 (2/2965) 0 * Os_TE_685037 Os_TE_685037 Chr11 18623304 18623303 - NDNA1TNA_OS 334 0.0007 (2/2962) 0 * Os_TE_685038 Os_TE_685012 Chr11 18611641 18611640 - ORSgTEMT02400246 177 0.0024 (7/2978) 0 * Os_TE_685011 Os_TE_685011 Chr11 18611640 18611641 - TYPEM 227 0.0020 (6/2988) 0 * Os_TE_685012 Os_TE_685009 Chr11 18608203 18608202 + JOUZHEN 596 0.0393 (106/2700) 0 * * Os_TE_685008 Chr11 18608072 18608073 + RPO_OS 1983 0.0004 (1/2819) 0 * * Os_TE_685007 Chr11 18607991 18607992 + HARB-1_OS 5166 0.0324 (94/2901) 0 * Os_TE_685006 Os_TE_685006 Chr11 18607989 18607988 - HARB-1_OS 5166 0.0298 (87/2915) 0 * Os_TE_685007 Os_TE_685003 Chr11 18607572 18607134 - ORSgTEMT01800105 452 0.7787 (2249/2888) 1 Intact * Os_TE_684994 Chr11 18606483 18606760 - SZ-22_LTR 4403 0.7931 (2373/2992) 1 Intact * Os_TE_684992 Chr11 18606313 18606314 + ORSiCMCM00100019 2717 0.0100 (30/2995) 0 * Os_TE_684991 Os_TE_684991 Chr11 18606309 18606308 - TRUNCATOR2_LTR 2904 0.0104 (31/2994) 0 * Os_TE_684992 Os_TE_684990 Chr11 18605919 18605920 - SZ-40LTR 2465 0.0281 (84/2993) 0 * Os_TE_684989 Os_TE_684989 Chr11 18605915 18605914 + GYPSY-A_LTR 8951 0.0284 (85/2989) 0 * Os_TE_684990 Os_TE_684982 Chr11 18604571 18604310 + SZ-28LTR 262 0.7928 (2373/2993) 1 Intact Os_TE_684980 Os_TE_684980 Chr11 18603834 18604571 - SZ-28LTR 262 0.7898 (2356/2983) 1 Intact Os_TE_684982 Os_TE_684976 Chr11 18603109 18601958 + SZ-5LTR 1223 0.7899 (2354/2980) 1 Intact Os_TE_684964 Os_TE_684964 Chr11 18594024 18603107 - COPIA1-LTR_OS 9292 0.7882 (2334/2961) 1 Intact Os_TE_684976 Os_TE_684949 Chr11 18588949 18588708 - ORSgTEMT00900563 246 0.7897 (2340/2963) 1 Intact Os_TE_684945 Os_TE_684945 Chr11 18588713 18588918 + ORSgTEMT00900917 208 0.7931 (2354/2968) 1 Intact Os_TE_684949 Os_TE_684939 Chr11 18588318 18588319 - ORSiTETNOOT00134 607 0.0088 (26/2960) 0 * Os_TE_684938 Os_TE_684938 Chr11 18588311 18588310 + TWIF 586 0.0088 (26/2959) 0 * Os_TE_684939 Os_TE_684918 Chr11 18586479 18586480 + STOWAWAY51_OS 246 0.0014 (4/2957) 0 * * Os_TE_684917 Chr11 18586381 18586382 - ORSgTERT00100409 3526 0.0010 (3/2970) 0 * * Os_TE_684916 Chr11 18586267 18586266 + ORSgTEMT02400206 225 0.0007 (2/2975) 0 * * Os_TE_684914 Chr11 18586148 18586149 + TWIFBIG 3567 0.0275 (81/2944) 0 * Os_TE_684913 Os_TE_684913 Chr11 18586141 18586140 - ORSiTETNOOT00216 3569 0.0414 (98/2369) 0 * Os_TE_684914 Os_TE_684911 Chr11 18585024 18585023 - COPIA2-LTR_OS 6433 0.0003 (1/2983) 0 * * Os_TE_684909 Chr11 18584394 18584393 + ORSgTEMT00900648 236 0.2230 (665/2982) 0 * Os_TE_684908 Os_TE_684908 Chr11 18584392 18584393 + ORSgTEMT00901844 250 0.2221 (663/2985) 0 * Os_TE_684909 Os_TE_684904 Chr11 18583867 18583868 + CACTA-M 1129 0.0206 (61/2954) 0 * Os_TE_684903 Os_TE_684903 Chr11 18583865 18583864 - CACTA-M 1129 0.0239 (71/2971) 0 * Os_TE_684904 Os_TE_684900 Chr11 18581974 18578877 - SEVERIN-2 1952 0.7793 (2232/2864) 1 Intact Os_TE_684894 Os_TE_684894 Chr11 18578853 18581974 + SEVERIN-2 1952 0.7902 (2335/2955) 1 Intact Os_TE_684900 Os_TE_684892 Chr11 18577842 18577843 + SPMLIKE 10989 0.0103 (30/2905) 0 * Os_TE_684891 Os_TE_684891 Chr11 18577840 18577839 - ORSgTETN00200001 10994 0.0100 (29/2913) 0 * Os_TE_684892 Os_TE_684887 Chr11 18576978 18576979 + CASINE 174 0.1950 (581/2979) 0 * * Os_TE_684886 Chr11 18576880 18575687 - OSTE14 885 0.7920 (2364/2985) 1 Intact * Os_TE_684881 Chr11 18575674 18575675 + ORSgTEMT01602181 239 0.0028 (7/2459) 0 * * Os_TE_684877 Chr11 18573581 18573582 + ORSiTERTOOT00239 695 0.0003 (1/2946) 0 * * Os_TE_684844 Chr11 18570203 18570465 - ORSgTETNOOT02417 265 0.7557 (2181/2886) 1 Intact * Os_TE_684843 Chr11 18570184 18570185 - ORSgTEMT04600010 284 0.0021 (6/2812) 0 * * Os_TE_684806 Chr11 18543076 18543077 + ORSiCMCM00100019 2717 0.2105 (616/2926) 0 * Os_TE_684805 Os_TE_684805 Chr11 18543072 18543071 - TRUNCATOR2_LTR 2904 0.1887 (548/2904) 0 * Os_TE_684806 Os_TE_684800 Chr11 18540751 18540752 - SC-3_LTR 5748 0.1876 (559/2980) 0 * Os_TE_684799 Os_TE_684799 Chr11 18540747 18540746 + ORSiTERTOOT00296 5553 0.1884 (561/2978) 0 * Os_TE_684800 Os_TE_684798 Chr11 18540013 18540014 - SC-3_LTR 5748 0.0004 (1/2379) 0 * Os_TE_684797 Os_TE_684797 Chr11 18540009 18540008 + ORSiTERTOOT00296 5553 0.0003 (1/2975) 0 * Os_TE_684798 Os_TE_684796 Chr11 18538825 18538826 + NDNA1TNA_OS 334 0.0003 (1/2974) 0 * Os_TE_684795 Os_TE_684795 Chr11 18538823 18538822 - NDNA1TNA_OS 334 0.0003 (1/2977) 0 * Os_TE_684796 Os_TE_684794 Chr11 18538505 18538506 + F770 284 0.0013 (4/2968) 0 * Os_TE_684793 Os_TE_684793 Chr11 18538503 18538502 - F770 284 0.0013 (4/2971) 0 * Os_TE_684794 Os_TE_684786 Chr11 18533196 18533195 - ORSgTEMT02400246 177 0.0007 (2/2974) 0 * Os_TE_684785 Os_TE_684785 Chr11 18533195 18533196 - TYPEM 227 0.0007 (2/2979) 0 * Os_TE_684786 Os_TE_684784 Chr11 18533072 18533073 + RETRO2A_LTR 12895 0.0256 (76/2972) 0 * Os_TE_684783 Os_TE_684783 Chr11 18533068 18533067 - RETRO2_LTR 12874 0.0249 (74/2972) 0 * Os_TE_684784 Os_TE_684782 Chr11 18533023 18533024 + COPI2_LTR 4733 0.0003 (1/2955) 0 * Os_TE_684781 Os_TE_684781 Chr11 18533019 18533018 - COPI2_LTR 4733 0.0007 (2/2965) 0 * Os_TE_684782 Os_TE_684780 Chr11 18532896 18532897 - SC-3_LTR 5748 0.0007 (2/2960) 0 * Os_TE_684779 Os_TE_684779 Chr11 18532892 18532891 + ORSiTERTOOT00296 5553 0.0007 (2/2965) 0 * Os_TE_684780 Os_TE_684752 Chr11 18513739 18513740 + TWIFBIG 3567 0.0015 (4/2596) 0 * * Os_TE_684724 Chr11 18502056 18501708 - OLO24 345 0.8191 (2314/2825) 1 Intact Os_TE_684721 Os_TE_684721 Chr11 18501708 18502053 + OLO24 345 0.8108 (2396/2955) 1 Intact Os_TE_684724 Os_TE_684717 Chr11 18501243 18501242 - ORSgTEMT01600639 228 0.2009 (590/2937) 0 * * Os_TE_684715 Chr11 18500516 18500517 - RIREX_LTR 8828 0.0248 (73/2942) 0 * Os_TE_684714 Os_TE_684714 Chr11 18500512 18500511 + RIREX_LTR 8828 0.0252 (74/2933) 0 * Os_TE_684715 Os_TE_684710 Chr11 18499623 18499622 + ORSgTEMT01601122 212 0.2057 (596/2897) 0 * * Os_TE_684709 Chr11 18499615 18499616 - MPING 430 0.0003 (1/2901) 0 * * Os_TE_684707 Chr11 18499423 18499424 - RIRE2_LTR 11306 0.0007 (2/2942) 0 * Os_TE_684706 Os_TE_684706 Chr11 18499419 18499418 + RIRE2_LTR 11306 0.0007 (2/2932) 0 * Os_TE_684707 Os_TE_684699 Chr11 18498200 18498199 - ORSgTEMT00100799 337 0.6730 (1850/2749) 0 * * Os_TE_684688 Chr11 18491933 18491934 - ORSgTETNOOT01413 258 0.1791 (527/2943) 0 * Os_TE_684687 Os_TE_684687 Chr11 18491932 18491931 - ORSgTETNOOT02156 266 0.1794 (530/2955) 0 * Os_TE_684688 Os_TE_684683 Chr11 18487013 18487014 + ORSiTERTOOT00296 5553 0.0003 (1/2997) 0 * Os_TE_684682 Os_TE_684682 Chr11 18487009 18487008 - SC-3_LTR 5748 0.0003 (1/2997) 0 * Os_TE_684683 Os_TE_684670 Chr11 18485009 18485008 - ORSgTEMT01601432 239 0.1771 (523/2953) 0 * Os_TE_684669 Os_TE_684669 Chr11 18485006 18485007 + ORSgTEMT01602181 239 0.1760 (521/2961) 0 * Os_TE_684670 Os_TE_684640 Chr11 18482152 18482151 + RETRO1_LTR 8314 0.0007 (2/2946) 0 * * Os_TE_684629 Chr11 18480574 18480573 - COPIA1-LTR_OS 9292 0.0003 (1/2894) 0 * * Os_TE_684592 Chr11 18462277 18462278 + STOWAWAY21_OS 243 0.0027 (8/2991) 0 * * Os_TE_684577 Chr11 18459643 18459644 - MPING 430 0.0017 (5/2966) 0 * Os_TE_684576 Os_TE_684576 Chr11 18459641 18459640 + MPING 430 0.0017 (5/2980) 0 * Os_TE_684577 Os_TE_684568 Chr11 18456558 18456559 - COPIA2-LTR_OS 6433 0.0024 (7/2941) 0 * Os_TE_684567 Os_TE_684567 Chr11 18456554 18456553 + COPIA2-LTR_OS 6433 0.0014 (4/2941) 0 * Os_TE_684568 Os_TE_684563 Chr11 18454841 18453821 + ORSgTETN00200005 1121 0.3393 (1010/2977) 1 Intact Os_TE_684561 Os_TE_684561 Chr11 18453822 18454838 + CACTA-I 1124 0.3459 (1009/2917) 1 Intact Os_TE_684563 Os_TE_684559 Chr11 18453254 18453253 - ORSgTEMT00900075 250 0.0031 (9/2888) 0 * Os_TE_684557 Os_TE_684557 Chr11 18453246 18453247 - ORSgTEMT00901138 254 0.0031 (9/2919) 0 * Os_TE_684559 Os_TE_684556 Chr11 18453165 18452862 - ORSgTEMT03800066 376 0.3643 (1027/2819) 1 Intact * Os_TE_684554 Chr11 18451814 18451815 + ORSgTEMT00501005 147 0.6712 (2005/2987) 0 * Os_TE_684553 Os_TE_684553 Chr11 18451812 18451811 + ORSgTEMT00501356 145 0.6699 (1997/2981) 0 * Os_TE_684554 Os_TE_684552 Chr11 18448270 18448269 - TREP215 239 0.0027 (8/2963) 0 * * Os_TE_684542 Chr11 18445016 18445017 + RIREX_LTR 8828 0.0017 (5/2954) 0 * * Os_TE_684538 Chr11 18443774 18443775 - ENSPM4_OS 11610 0.0003 (1/2985) 0 * * Os_TE_684531 Chr11 18441713 18441714 - ORSgTEMT01602074 239 0.0092 (27/2942) 0 * * Os_TE_684524 Chr11 18440532 18440533 - SEVERIN-2 1952 0.0017 (5/2869) 0 * * Os_TE_684503 Chr11 18434071 18434070 + F118 179 0.0039 (9/2304) 0 * * Os_TE_684493 Chr11 18430193 18430194 - ORSgTETN00100395 205 0.0003 (1/2984) 0 * * Os_TE_684486 Chr11 18428615 18428616 - SC-8_LTR 4951 0.2091 (623/2980) 0 * Os_TE_684485 Os_TE_684485 Chr11 18428611 18428610 + SC-8_LTR 4951 0.2075 (618/2979) 0 * Os_TE_684486 Os_TE_684472 Chr11 18426494 18426495 + SEVERIN-2 1952 0.0310 (92/2967) 0 * * Os_TE_684464 Chr11 18422558 18422559 - MuDR2_OS 6770 0.0110 (33/2988) 0 * Os_TE_684463 Os_TE_684463 Chr11 18422549 18422548 + MuDR2_OS 6770 0.0087 (26/2980) 0 * Os_TE_684464 Os_TE_684455 Chr11 18421706 18421705 + MPING 430 0.0155 (44/2832) 0 * * Os_TE_684449 Chr11 18415865 18415547 - STOWAWAY12_OS 312 0.3912 (1084/2771) 1 Intact Os_TE_684447 Os_TE_684447 Chr11 18415545 18415867 - ORSgTEMT02900061 318 0.3597 (1074/2986) 1 Intact Os_TE_684449 Os_TE_684445 Chr11 18411225 18411226 + ORSiTERTOOT00381 4988 0.0003 (1/2996) 0 * Os_TE_684444 Os_TE_684444 Chr11 18411221 18411220 - SC-8_LTR 4951 0.0003 (1/2993) 0 * Os_TE_684445 Os_TE_684421 Chr11 18406108 18406109 + DITTO3 260 0.3983 (1159/2910) 0 * * Os_TE_684411 Chr11 18405223 18405222 + ORSgTEMT00700017 386 0.0014 (4/2852) 0 * * Os_TE_684388 Chr11 18398733 18398580 + ORSgTEMT01701591 154 0.6814 (2038/2991) 1 Intact Os_TE_684387 Os_TE_684387 Chr11 18398580 18398733 + ORSgTEMT01702111 154 0.6788 (2035/2998) 1 Intact Os_TE_684388 Os_TE_684385 Chr11 18397508 18397507 - ORSgTEMT02600002 356 0.0111 (33/2976) 0 * * Os_TE_684380 Chr11 18396321 18396320 + ORSiTERTOOT00296 5553 0.0003 (1/2997) 0 * * Os_TE_684378 Chr11 18395899 18395898 - SC-3_LTR 5748 0.0003 (1/2996) 0 * * Os_TE_684377 Chr11 18394235 18394236 - ORSiTERTOOT00035 413 0.0003 (1/2993) 0 * * Os_TE_684372 Chr11 18391312 18391313 - SZ-9LTR 965 0.0037 (7/1910) 0 * Os_TE_684371 Os_TE_684371 Chr11 18391308 18391307 + SZ-9LTR 965 0.0023 (7/2981) 0 * Os_TE_684372 Os_TE_684370 Chr11 18390957 18390958 - AMYLTP 383 0.0643 (190/2955) 0 * Os_TE_684369 Os_TE_684369 Chr11 18390949 18390948 + AMYLTP 383 0.0666 (197/2959) 0 * Os_TE_684370 Os_TE_684337 Chr11 18377678 18377679 - SC-3_LTR 5748 0.0563 (108/1920) 0 * * Os_TE_684334 Chr11 18374338 18374339 + ORSiTERTOOT00381 4988 0.0037 (7/1909) 0 * Os_TE_684333 Os_TE_684333 Chr11 18374334 18374333 - SC-8_LTR 4951 0.0031 (6/1906) 0 * Os_TE_684334 Os_TE_684327 Chr11 18372680 18372679 - SZ-30_LTR 6377 0.0005 (1/1897) 0 * * Os_TE_684323 Chr11 18372475 18372563 + ORSgTETNOOT01834 251 0.2508 (475/1894) 1 Intact * Os_TE_684284 Chr11 18358346 18358345 - SC-3_LTR 5748 0.0005 (1/1906) 0 * * Os_TE_684237 Chr11 18330652 18335381 - ORSiTERT00100077 4724 0.6334 (1890/2984) 1 Intact * Os_TE_684229 Chr11 18324365 18324366 + COPI2_LTR 4733 0.1106 (317/2865) 0 * Os_TE_684228 Os_TE_684228 Chr11 18324361 18324360 - COPI2_LTR 4733 0.1048 (313/2987) 0 * Os_TE_684229 Os_TE_684220 Chr11 18321435 18321436 - SZ-62LTR 3649 0.0007 (2/2971) 0 * Os_TE_684219 Os_TE_684219 Chr11 18321431 18321430 + SZ-62LTR 3649 0.0007 (2/2964) 0 * Os_TE_684220 Os_TE_684214 Chr11 18317916 18317682 - ORSgTEMT01601834 234 0.6294 (1878/2984) 1 Intact Os_TE_684213 Os_TE_684213 Chr11 18317679 18317916 + ORSgTEMT01601934 207 0.6271 (1865/2974) 1 Intact Os_TE_684214 Os_TE_684212 Chr11 18316986 18316985 - TRUNCATOR 2918 0.0109 (32/2946) 0 * Os_TE_684211 Os_TE_684211 Chr11 18316985 18316986 + TRUNCATOR 2918 0.0122 (36/2955) 0 * Os_TE_684212 Os_TE_684210 Chr11 18316209 18316208 + HELITRON8_OS 8831 0.1217 (359/2950) 0 * * Os_TE_684206 Chr11 18311292 18311291 - TRUNCATOR 2918 0.0596 (178/2989) 0 * Os_TE_684205 Os_TE_684205 Chr11 18311290 18311291 + TRUNCATOR 2918 0.0608 (182/2992) 0 * Os_TE_684206 Os_TE_684202 Chr11 18308768 18308767 + CACTA-I 1124 0.0268 (80/2990) 0 * * Os_TE_684198 Chr11 18306101 18306102 + SPMLIKE 10989 0.0007 (2/2990) 0 * Os_TE_684197 Os_TE_684197 Chr11 18306099 18306098 - ORSgTETN00200001 10994 0.0007 (2/2989) 0 * Os_TE_684198 Os_TE_684184 Chr11 18301194 18301195 + RIRE2_LTR 11306 0.0033 (10/2996) 0 * * Os_TE_684174 Chr11 18293298 18293299 + F569 228 0.0094 (28/2984) 0 * Os_TE_684173 Os_TE_684173 Chr11 18293296 18293295 - F569 228 0.0094 (28/2993) 0 * Os_TE_684174 Os_TE_684172 Chr11 18292374 18292375 + COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_684171 Os_TE_684171 Chr11 18292370 18292369 - COPI2_LTR 4733 0.0003 (1/2992) 0 * Os_TE_684172 Os_TE_684169 Chr11 18291043 18290883 + WUWU 113 0.6489 (1939/2988) 1 Intact Os_TE_684166 Os_TE_684166 Chr11 18290880 18291043 + WUWU 113 0.6532 (1944/2976) 1 Intact Os_TE_684169 Os_TE_684153 Chr11 18280762 18279586 - CACTA-H 1152 0.1883 (561/2980) 1 Intact Os_TE_684152 Os_TE_684152 Chr11 18279583 18280764 + CACTA-B 1103 0.1861 (551/2960) 1 Intact Os_TE_684153 Os_TE_684141 Chr11 18279063 18279062 + TRUNCATOR2_LTR 2904 0.3219 (912/2833) 0 * * Os_TE_684135 Chr11 18277485 18277486 - OSTE20 496 0.0034 (10/2985) 0 * Os_TE_684134 Os_TE_684134 Chr11 18277481 18277480 - OSTE20 496 0.0034 (10/2975) 0 * Os_TE_684135 Os_TE_684113 Chr11 18268333 18268334 + RIREX_LTR 8828 0.0030 (6/1971) 0 * Os_TE_684112 Os_TE_684112 Chr11 18268329 18268328 - RIREX_LTR 8828 0.0030 (6/1974) 0 * Os_TE_684113 Os_TE_684110 Chr11 18268045 18268044 + TWIF 586 0.0005 (1/1968) 0 * * Os_TE_684107 Chr11 18266736 18266737 + ORSiCMCM00100019 2717 0.3911 (751/1920) 0 * * Os_TE_684059 Chr11 18245930 18245931 - CACTA-H 1152 0.3638 (1079/2966) 0 * Os_TE_684058 Os_TE_684058 Chr11 18245928 18245927 + CACTA-H 1152 0.3657 (1086/2970) 0 * Os_TE_684059 Os_TE_684043 Chr11 18238844 18238845 - ORSgTERT00201216 11284 0.0077 (23/2970) 0 * Os_TE_684042 Os_TE_684042 Chr11 18238840 18238839 - RIRE2_LTR 11306 0.0071 (21/2954) 0 * Os_TE_684043 Os_TE_684034 Chr11 18236195 18236196 - DS-RICE2N 613 0.0004 (1/2515) 0 * * Os_TE_684014 Chr11 18227616 18227617 + SZ-67LTR 1540 0.0020 (6/2969) 0 * Os_TE_684013 Os_TE_684013 Chr11 18227612 18227611 - SZ-67LTR 1540 0.0023 (7/2981) 0 * Os_TE_684014 Os_TE_683981 Chr11 18203396 18184439 - MDR2 6967 0.1980 (588/2969) 1 Intact Os_TE_683966 Os_TE_683966 Chr11 18184439 18203396 + MDR2 6967 0.1958 (581/2968) 1 Intact Os_TE_683981 Os_TE_683959 Chr11 18182392 18182391 + SEVERIN-2 1952 0.0027 (8/2968) 0 * * Os_TE_683958 Chr11 18182006 18182007 - CACTA-M 1129 0.0150 (43/2865) 0 * Os_TE_683957 Os_TE_683957 Chr11 18182004 18182003 + CACTA-I 1124 0.0181 (52/2874) 0 * Os_TE_683958 Os_TE_683950 Chr11 18178299 18178300 + ORSiTERTOOT00097 759 0.0003 (1/2982) 0 * * Os_TE_683930 Chr11 18171650 18171651 + MUDR_N7_OS 1283 0.0010 (3/2988) 0 * Os_TE_683929 Os_TE_683929 Chr11 18171642 18171641 - MUDR_N7_OS 1283 0.0007 (2/2987) 0 * Os_TE_683930 Os_TE_683927 Chr11 18171028 18171027 + MERMITE18E 1528 0.0050 (15/2981) 0 * * Os_TE_683925 Chr11 18170994 18170993 - SZ-62LTR 3649 0.0003 (1/2959) 0 * * Os_TE_683923 Chr11 18169985 18169986 + ENSPM4_OS 11610 0.0010 (3/2951) 0 * * Os_TE_683892 Chr11 18158560 18158559 + ENSPM4_OS 11610 0.0862 (257/2983) 0 * * Os_TE_683890 Chr11 18158484 18158483 - CACTA-I 1124 0.0070 (21/2994) 0 * * Os_TE_683889 Chr11 18158189 18158190 + F569 228 0.0031 (9/2893) 0 * * Os_TE_683888 Chr11 18157995 18157996 + F569 228 0.0068 (20/2945) 0 * * Os_TE_683855 Chr11 18138588 18138589 + SPMLIKE 10989 0.0010 (3/2972) 0 * Os_TE_683854 Os_TE_683854 Chr11 18138586 18138585 - ORSgTETN00200001 10994 0.0010 (3/2975) 0 * Os_TE_683855 Os_TE_683845 Chr11 18135318 18135319 - ORSgTETN00200001 10994 0.0123 (34/2766) 0 * Os_TE_683844 Os_TE_683844 Chr11 18135316 18135315 + SPMLIKE 10989 0.0043 (11/2579) 0 * Os_TE_683845 Os_TE_683841 Chr11 18134838 18134839 + AMYLTP 383 0.0010 (3/2974) 0 * * Os_TE_683813 Chr11 18127018 18127019 - RPO_OS 1983 0.0030 (9/2951) 0 * * Os_TE_683798 Chr11 18123419 18123418 + ORSiTEMT00300001 383 0.0051 (15/2966) 0 * * Os_TE_683766 Chr11 18115869 18115870 + AMYLTP 383 0.0020 (6/2986) 0 * Os_TE_683765 Os_TE_683765 Chr11 18115861 18115860 - AMYLTP 383 0.0020 (6/2970) 0 * Os_TE_683766 Os_TE_683756 Chr11 18111016 18111017 - SZ-55_LTR 10318 0.0010 (3/2975) 0 * Os_TE_683755 Os_TE_683755 Chr11 18111012 18111011 + SZ-55_LTR 10318 0.0010 (3/2983) 0 * Os_TE_683756 Os_TE_683753 Chr11 18109879 18109880 - SC-8_LTR 4951 0.0013 (4/2989) 0 * Os_TE_683752 Os_TE_683752 Chr11 18109875 18109874 + SC-8_LTR 4951 0.0013 (4/2986) 0 * Os_TE_683753 Os_TE_683749 Chr11 18106356 18106355 + ORSgTEMT01601591 242 0.0013 (4/2972) 0 * Os_TE_683748 Os_TE_683748 Chr11 18106350 18106351 + STOWAWAY51_OS 246 0.0013 (4/2978) 0 * Os_TE_683749 Os_TE_683736 Chr11 18100688 18100689 + SEVERIN-2 1952 0.5132 (1463/2851) 0 * Os_TE_683735 Os_TE_683735 Chr11 18100685 18100684 - SEVERIN-2 1952 0.5329 (1573/2952) 0 * Os_TE_683736 Os_TE_683730 Chr11 18098355 18098612 + STOWAWAY32_OS 261 0.4309 (1148/2664) 1 Intact * Os_TE_683729 Chr11 18096692 18096691 - STOWAWAY8_OS 259 0.7201 (2063/2865) 0 * * Os_TE_683726 Chr11 18096473 18096094 - ORSgTEMT03000049 380 0.2882 (815/2828) 1 Intact Os_TE_683723 Os_TE_683723 Chr11 18096092 18096452 - TYPEU 362 0.3078 (881/2862) 1 Intact Os_TE_683726 Os_TE_683720 Chr11 18095595 18095594 - RIRE2_LTR 11306 0.1620 (482/2976) 0 * * Os_TE_683683 Chr11 18076491 18076492 + MDR2 6967 0.1013 (285/2814) 0 * Os_TE_683682 Os_TE_683682 Chr11 18076482 18076481 - MDR2 6967 0.0989 (285/2883) 0 * Os_TE_683683 Os_TE_683680 Chr11 18076072 18076073 - RIREX_LTR 8828 0.0255 (73/2864) 0 * Os_TE_683679 Os_TE_683679 Chr11 18076068 18076067 + RIREX_LTR 8828 0.0260 (75/2889) 0 * Os_TE_683680 Os_TE_683677 Chr11 18075991 18075990 - COPIA2-LTR_OS 6433 0.0003 (1/2875) 0 * * Os_TE_683659 Chr11 18072464 18072463 + TRUNCATOR 2918 0.0328 (97/2957) 0 * Os_TE_683658 Os_TE_683658 Chr11 18072463 18072464 - TRUNCATOR 2918 0.0321 (84/2617) 0 * Os_TE_683659 Os_TE_683646 Chr11 18067754 18067753 - SZ-35LTR 3853 0.0929 (278/2992) 0 * * Os_TE_683645 Chr11 18065824 18065825 + TRUNCATOR 2918 0.1260 (377/2993) 0 * * Os_TE_683642 Chr11 18064748 18064749 - RIREX_LTR 8828 0.0003 (1/2993) 0 * Os_TE_683641 Os_TE_683641 Chr11 18064744 18064743 + RIREX_LTR 8828 0.0003 (1/2994) 0 * Os_TE_683642 Os_TE_683623 Chr11 18060914 18060915 + ORSiTERTOOT00074 4935 0.0003 (1/2981) 0 * * Os_TE_683611 Chr11 18057691 18057690 - SZ-9LTR 965 0.0057 (17/2966) 0 * * Os_TE_683604 Chr11 18055220 18055221 - ORSgTEMT01601208 238 0.0013 (1/768) 0 * * Os_TE_683600 Chr11 18054367 18054368 + ORSgTEMT01600768 234 0.7079 (1820/2571) 0 * Os_TE_683599 Os_TE_683599 Chr11 18054364 18054363 - ORSgTEMT01600768 234 0.7476 (2186/2924) 0 * Os_TE_683600 Os_TE_683589 Chr11 18050488 18050489 + SPMLIKE 10989 0.0020 (6/2960) 0 * * Os_TE_683585 Chr11 18048476 18048477 + ORSgTEMT01701104 154 0.0007 (2/2796) 0 * * Os_TE_683583 Chr11 18046571 18046572 + SPMLIKE 10989 0.0039 (11/2846) 0 * Os_TE_683582 Os_TE_683582 Chr11 18046569 18046568 - ORSgTETN00200001 10994 0.0039 (11/2847) 0 * Os_TE_683583 Os_TE_683577 Chr11 18041651 18041314 + OLO24C 356 0.3351 (989/2951) 1 Intact * Os_TE_683560 Chr11 18037500 18040207 + ORSiCMCM00100019 2717 0.7554 (704/932) 1 Intact * Os_TE_683558 Chr11 18035500 18035351 - STOWAWAY1_OS 149 0.7771 (889/1144) 1 Intact * Os_TE_683554 Chr11 18034943 18034944 - MPING 430 0.0090 (9/1001) 0 * * Os_TE_683550 Chr11 18033150 18033149 - ORSgTEMT01601432 239 0.0797 (81/1016) 0 * Os_TE_683549 Os_TE_683549 Chr11 18033147 18033148 + ORSgTEMT01601983 238 0.0845 (86/1018) 0 * Os_TE_683550 Os_TE_683542 Chr11 18031216 18031217 - RIREX_LTR 8828 0.0071 (7/982) 0 * Os_TE_683541 Os_TE_683541 Chr11 18031212 18031211 + RIREX_LTR 8828 0.0071 (7/988) 0 * Os_TE_683542 Os_TE_683462 Chr11 17985808 17985809 - RIRE2_LTR 11306 0.0332 (96/2894) 0 * * Os_TE_683454 Chr11 17982124 17982123 + SPMLIKE 10989 0.0028 (8/2890) 0 * Os_TE_683453 Os_TE_683453 Chr11 17982123 17982124 - ORSgTETN00200001 10994 0.0018 (5/2793) 0 * Os_TE_683454 Os_TE_683452 Chr11 17982111 17982112 + STOWAWAY9_OS 235 0.0326 (94/2882) 0 * * Os_TE_683450 Chr11 17981984 17981983 - ENSPM4_OS 11610 0.0055 (16/2890) 0 * * Os_TE_683448 Chr11 17981959 17981960 + TELIA 141 0.0983 (284/2889) 0 * Os_TE_683447 Os_TE_683447 Chr11 17981951 17981950 - TELIA 141 0.1021 (283/2772) 0 * Os_TE_683448 Os_TE_683446 Chr11 17981552 17981553 - SZ-35LTR 3853 0.0061 (17/2774) 0 * * Os_TE_683428 Chr11 17977553 17977554 + TRUNCATOR2_LTR 2904 0.1294 (351/2713) 0 * Os_TE_683427 Os_TE_683427 Chr11 17977549 17977548 - TRUNCATOR2_LTR 2904 0.1391 (378/2718) 0 * Os_TE_683428 Os_TE_683419 Chr11 17974173 17974174 + F118 179 0.0391 (112/2866) 0 * Os_TE_683418 Os_TE_683418 Chr11 17974166 17974165 - F118 179 0.0395 (113/2864) 0 * Os_TE_683419 Os_TE_683376 Chr11 17952845 17952844 - ORSgTEMT01601834 234 0.0385 (105/2726) 0 * Os_TE_683375 Os_TE_683375 Chr11 17952844 17952845 + ORSgTEMT01601463 239 0.0382 (104/2724) 0 * Os_TE_683376 Os_TE_683363 Chr11 17945340 17945341 - RIRE2_LTR 11306 0.0358 (107/2990) 0 * Os_TE_683362 Os_TE_683362 Chr11 17945336 17945335 + RIRE2_LTR 11306 0.0338 (101/2988) 0 * Os_TE_683363 Os_TE_683360 Chr11 17944093 17944092 - ORSgTEMT00300141 415 0.0947 (283/2989) 0 * * Os_TE_683356 Chr11 17941624 17941625 + ORSiTERTOOT00028 8600 0.0003 (1/2992) 0 * Os_TE_683355 Os_TE_683355 Chr11 17941620 17941619 - TRUNCATOR2_LTR 2904 0.0003 (1/2994) 0 * Os_TE_683356 Os_TE_683352 Chr11 17940056 17940057 - COPIA2-LTR_OS 6433 0.0027 (8/2948) 0 * Os_TE_683351 Os_TE_683351 Chr11 17940052 17940051 + COPIA2-LTR_OS 6433 0.0023 (7/2995) 0 * Os_TE_683352 Os_TE_683349 Chr11 17938239 17938240 + TRUNCATOR 2918 0.2842 (834/2935) 0 * * Os_TE_683339 Chr11 17934386 17934385 + ORSgTETNOOT01998 254 0.1385 (411/2968) 0 * * Os_TE_683314 Chr11 17924848 17924847 + ORSgTEMT01601122 212 0.0024 (6/2507) 0 * * Os_TE_683290 Chr11 17919118 17919117 - TRUNCATOR 2918 0.4680 (1382/2953) 0 * Os_TE_683289 Os_TE_683289 Chr11 17919117 17919118 + TRUNCATOR 2918 0.4685 (1378/2941) 0 * Os_TE_683290 Os_TE_683264 Chr11 17909959 17909960 - SZ-22_LTR 4403 0.0003 (1/2986) 0 * Os_TE_683263 Os_TE_683263 Chr11 17909955 17909954 + ORSiTERTOOT00226 792 0.0003 (1/2987) 0 * Os_TE_683264 Os_TE_683247 Chr11 17905315 17905316 + COPI2_LTR 4733 0.0261 (75/2879) 0 * Os_TE_683246 Os_TE_683246 Chr11 17905311 17905310 - COPI2_LTR 4733 0.0311 (90/2898) 0 * Os_TE_683247 Os_TE_683203 Chr11 17886965 17886964 + EnSpm-12_OS 12603 0.0017 (5/2959) 0 * * Os_TE_683200 Chr11 17885228 17885229 - TRUNCATOR2_LTR 2904 0.0281 (83/2950) 0 * * Os_TE_683188 Chr11 17877636 17877637 + COPI2_LTR 4733 0.0088 (26/2962) 0 * * Os_TE_683185 Chr11 17877365 17877366 + RIREX_LTR 8828 0.0003 (1/2936) 0 * Os_TE_683184 Os_TE_683184 Chr11 17877361 17877360 - RIREX_LTR 8828 0.0003 (1/2938) 0 * Os_TE_683185 Os_TE_683183 Chr11 17877190 17877191 + SPMLIKE 10989 0.0306 (73/2389) 0 * Os_TE_683182 Os_TE_683182 Chr11 17877188 17877187 - ORSgTETN00200001 10994 0.2182 (633/2901) 0 * Os_TE_683183 Os_TE_683153 Chr11 17867047 17867048 + SPMLIKE 10989 0.0070 (17/2418) 0 * Os_TE_683152 Os_TE_683152 Chr11 17867045 17867044 - ORSgTETN00200001 10994 0.0054 (13/2416) 0 * Os_TE_683153 Os_TE_683136 Chr11 17863986 17863987 - INDITTO 263 0.0008 (2/2407) 0 * * Os_TE_683124 Chr11 17858250 17858249 + STOWAWAY1_OS 149 0.0025 (6/2402) 0 * * Os_TE_683099 Chr11 17848203 17848204 - RIRE3_LTR 12054 0.0058 (14/2419) 0 * Os_TE_683098 Os_TE_683098 Chr11 17848199 17848198 + RIRE3_LTR 12054 0.0058 (14/2422) 0 * Os_TE_683099 Os_TE_683081 Chr11 17840558 17840559 - TRUNCATOR 2918 0.0050 (12/2383) 0 * * Os_TE_683069 Chr11 17839284 17839283 + RIRE3A_LTR 10580 0.3759 (910/2421) 0 * * Os_TE_683064 Chr11 17836559 17836560 + ORSiTERTOOT00028 8600 0.3609 (811/2247) 0 * * Os_TE_683061 Chr11 17835626 17835625 - F524 291 0.0025 (6/2363) 0 * * Os_TE_683056 Chr11 17834232 17834233 - ORSgTEMT01600639 228 0.7610 (1818/2389) 0 * * Os_TE_683053 Chr11 17832831 17832832 + SPMLIKE 10989 0.3349 (833/2487) 0 * Os_TE_683052 Os_TE_683052 Chr11 17832829 17832828 - ORSgTETN00200001 10994 0.2900 (663/2286) 0 * Os_TE_683053 Os_TE_683051 Chr11 17832535 17832536 + SPMLIKE 10989 0.1235 (337/2729) 0 * * Os_TE_683038 Chr11 17831423 17831424 - STOWAWAY51_OS 246 0.0020 (6/2971) 0 * * Os_TE_683020 Chr11 17823347 17823348 - INDITTO 263 0.0017 (5/2944) 0 * Os_TE_683019 Os_TE_683019 Chr11 17823345 17823344 + INDITTO 263 0.0017 (5/2978) 0 * Os_TE_683020 Os_TE_683017 Chr11 17823263 17823262 + INDITTO 263 0.0536 (156/2910) 0 * * Os_TE_683016 Chr11 17823243 17823244 + INDITTO 263 0.1410 (419/2972) 0 * * Os_TE_683008 Chr11 17822757 17822758 - INDITTO 263 0.5957 (1768/2968) 0 * * Os_TE_683007 Chr11 17822755 17822754 + INDITTO 263 0.4987 (1356/2719) 0 * * Os_TE_683002 Chr11 17821202 17821201 + ORSgTEMT01601092 239 0.5379 (1596/2967) 0 * Os_TE_683001 Os_TE_683001 Chr11 17821199 17821200 - ORSgTEMT01602413 239 0.5383 (1595/2963) 0 * Os_TE_683002 Os_TE_682999 Chr11 17821019 17821018 + SPMLIKE 10989 0.0027 (8/2967) 0 * * Os_TE_682998 Chr11 17820761 17820760 + SEVERIN-2 1952 0.0048 (7/1468) 0 * * Os_TE_682997 Chr11 17820097 17820098 + COPIA2-LTR_OS 6433 0.0014 (4/2958) 0 * Os_TE_682996 Os_TE_682996 Chr11 17820093 17820092 - COPIA2-LTR_OS 6433 0.0010 (3/2965) 0 * Os_TE_682997 Os_TE_682995 Chr11 17820034 17820035 - RIRE2_LTR 11306 0.0275 (81/2950) 0 * Os_TE_682994 Os_TE_682994 Chr11 17820030 17820029 + RIRE2_LTR 11306 0.0282 (82/2904) 0 * Os_TE_682995 Os_TE_682992 Chr11 17819761 17819762 - RIREX_LTR 8828 0.0010 (3/2929) 0 * Os_TE_682991 Os_TE_682991 Chr11 17819757 17819756 + RIREX_LTR 8828 0.0010 (3/2926) 0 * Os_TE_682992 Os_TE_682982 Chr11 17817710 17817709 + ORSiTETNOOT00107 906 0.3706 (813/2194) 0 * Os_TE_682981 Os_TE_682981 Chr11 17817707 17817708 - ORSiTETNOOT00107 906 0.5347 (1541/2882) 0 * Os_TE_682982 Os_TE_682979 Chr11 17816464 17816465 + SPMLIKE 10989 0.0020 (6/2978) 0 * Os_TE_682978 Os_TE_682978 Chr11 17816462 17816461 - ORSgTETN00200001 10994 0.0024 (7/2976) 0 * Os_TE_682979 Os_TE_682974 Chr11 17814131 17814132 + CACTA-L 1162 0.5145 (1474/2865) 0 * * Os_TE_682966 Chr11 17812546 17807115 + MERMITEB 1610 0.4818 (1407/2920) 1 Intact Os_TE_682961 Os_TE_682961 Chr11 17807115 17812544 + MERMITE18B 1306 0.4657 (1343/2884) 1 Intact Os_TE_682966 Os_TE_682960 Chr11 17807105 17807106 - MuDR3_OS 8604 0.0027 (8/2941) 0 * Os_TE_682959 Os_TE_682959 Chr11 17807096 17807095 - MuDR3_OS 8604 0.0044 (6/1365) 0 * Os_TE_682960 Os_TE_682955 Chr11 17805450 17805451 + DS-RICE4N 715 0.0074 (22/2963) 0 * * Os_TE_682949 Chr11 17804667 17804668 + COPIA2-LTR_OS 6433 0.0027 (8/2985) 0 * Os_TE_682948 Os_TE_682948 Chr11 17804663 17804662 - COPIA2-LTR_OS 6433 0.0027 (8/2965) 0 * Os_TE_682949 Os_TE_682934 Chr11 17797542 17797543 - ORSgTETN00200001 10994 0.0280 (83/2965) 0 * Os_TE_682933 Os_TE_682933 Chr11 17797540 17797539 + SPMLIKE 10989 0.0305 (91/2982) 0 * Os_TE_682934 Os_TE_682929 Chr11 17796730 17796729 - ORSgTEMT02400246 177 0.0270 (80/2964) 0 * Os_TE_682928 Os_TE_682928 Chr11 17796729 17796730 - TYPEM 227 0.0286 (85/2968) 0 * Os_TE_682929 Os_TE_682920 Chr11 17795383 17795384 - TRUNCATOR2_LTR 2904 0.0003 (1/2994) 0 * * Os_TE_682908 Chr11 17791226 17791225 + STOWAWAY44_OS 240 0.0007 (2/2996) 0 * Os_TE_682907 Os_TE_682907 Chr11 17791223 17791224 - STOWAWAY44_OS 240 0.0007 (2/2995) 0 * Os_TE_682908 Os_TE_682905 Chr11 17790843 17790844 - INDITTO 263 0.1269 (380/2995) 0 * Os_TE_682904 Os_TE_682904 Chr11 17790841 17790840 + INDITTO 263 0.1282 (384/2995) 0 * Os_TE_682905 Os_TE_682901 Chr11 17790431 17790570 - ORSgTETNOOT01930 140 0.1979 (592/2991) 1 Intact * Os_TE_682900 Chr11 17789587 17789588 + INDITTO 263 0.0003 (1/2986) 0 * Os_TE_682899 Os_TE_682899 Chr11 17789585 17789584 - INDITTO 263 0.0003 (1/2985) 0 * Os_TE_682900 Os_TE_682885 Chr11 17787802 17787801 + HARB-1_OS 5166 0.0003 (1/2993) 0 * * Os_TE_682884 Chr11 17787656 17787657 - MPING 430 0.0004 (1/2808) 0 * Os_TE_682883 Os_TE_682883 Chr11 17787654 17787653 + MPING 430 0.0003 (1/2987) 0 * Os_TE_682884 Os_TE_682882 Chr11 17787628 17787627 - ORSgTEMT00100799 337 0.1052 (312/2967) 0 * Os_TE_682881 Os_TE_682881 Chr11 17787627 17787628 + NDNA1TNA_OS 334 0.0739 (127/1718) 0 * Os_TE_682882 Os_TE_682847 Chr11 17772774 17772775 - DITAIL 271 0.0004 (1/2565) 0 * * Os_TE_682806 Chr11 17765000 17765001 + COPI2_LTR 4733 0.0100 (30/2990) 0 * Os_TE_682805 Os_TE_682805 Chr11 17764996 17764995 - COPI2_LTR 4733 0.0104 (31/2993) 0 * Os_TE_682806 Os_TE_682804 Chr11 17764994 17764995 + ORSiCMCM00100019 2717 0.0017 (5/2995) 0 * Os_TE_682803 Os_TE_682803 Chr11 17764990 17764989 - TRUNCATOR2_LTR 2904 0.0017 (5/2995) 0 * Os_TE_682804 Os_TE_682800 Chr11 17764393 17764392 + RETRO2_LTR 12874 0.0010 (3/2884) 0 * * Os_TE_682760 Chr11 17748308 17748309 - MPING 430 0.1214 (337/2775) 0 * Os_TE_682759 Os_TE_682759 Chr11 17748306 17748305 + MPING 430 0.1294 (364/2813) 0 * Os_TE_682760 Os_TE_682732 Chr11 17737632 17737633 - MPING 430 0.0003 (1/2993) 0 * Os_TE_682731 Os_TE_682731 Chr11 17737630 17737629 + MPING 430 0.0003 (1/2994) 0 * Os_TE_682732 Os_TE_682707 Chr11 17727859 17727860 + MuDR2_OS 6770 0.0207 (61/2940) 0 * Os_TE_682706 Os_TE_682706 Chr11 17727850 17727849 - MuDR2_OS 6770 0.0251 (74/2954) 0 * Os_TE_682707 Os_TE_682703 Chr11 17726786 17726785 + CACTA-B 1103 0.0079 (8/1011) 0 * Os_TE_682702 Os_TE_682702 Chr11 17726785 17726786 - ORSgTETN00200001 10994 0.0081 (8/993) 0 * Os_TE_682703 Os_TE_682695 Chr11 17725858 17725859 - MDR2 6967 0.0263 (77/2925) 0 * Os_TE_682694 Os_TE_682694 Chr11 17725850 17725849 + MDR2 6967 0.0266 (78/2930) 0 * Os_TE_682695 Os_TE_682679 Chr11 17721570 17721571 + TWIFBIG 3567 0.0114 (33/2898) 0 * Os_TE_682678 Os_TE_682678 Chr11 17721563 17721562 - ORSiTETNOOT00216 3569 0.0028 (8/2883) 0 * Os_TE_682679 Os_TE_682654 Chr11 17714807 17714806 + OLO24 345 0.0067 (20/2991) 0 * * Os_TE_682652 Chr11 17713045 17713044 - ENSPM4_OS 11610 0.0047 (14/2955) 0 * * Os_TE_682647 Chr11 17712233 17712232 + TRUNCATOR 2918 0.0027 (8/2958) 0 * Os_TE_682646 Os_TE_682646 Chr11 17712232 17712233 - TRUNCATOR 2918 0.0024 (7/2958) 0 * Os_TE_682647 Os_TE_682609 Chr11 17696246 17696245 + ORSgTEMT01601591 242 0.0003 (1/2956) 0 * * Os_TE_682591 Chr11 17691184 17691185 - COPI2_LTR 4733 0.0003 (1/2975) 0 * * Os_TE_682585 Chr11 17689656 17689657 - RETROSAT3_LTR 11537 0.0047 (13/2756) 0 * * Os_TE_682571 Chr11 17683872 17683873 - OSTONOR1_LTR 6440 0.4897 (1429/2918) 0 * Os_TE_682570 Os_TE_682570 Chr11 17683868 17683867 + OSTONOR1_LTR 6440 0.4678 (1394/2980) 0 * Os_TE_682571 Os_TE_682556 Chr11 17682118 17682119 - ORSgTETN00200001 10994 0.0003 (1/2992) 0 * Os_TE_682555 Os_TE_682555 Chr11 17682116 17682115 + SPMLIKE 10989 0.0003 (1/2982) 0 * Os_TE_682556 Os_TE_682554 Chr11 17681758 17681759 + NDNA1TNA_OS 334 0.0017 (5/2964) 0 * * Os_TE_682541 Chr11 17677223 17677224 - SC-3_LTR 5748 0.0040 (12/2976) 0 * Os_TE_682540 Os_TE_682540 Chr11 17677219 17677218 + ORSiTERTOOT00296 5553 0.0047 (14/2975) 0 * Os_TE_682541 Os_TE_682532 Chr11 17675494 17675495 - SC-3_LTR 5748 0.0003 (1/2988) 0 * Os_TE_682531 Os_TE_682531 Chr11 17675490 17675489 + ORSiTERTOOT00296 5553 0.0003 (1/2985) 0 * Os_TE_682532 Os_TE_682498 Chr11 17665811 17665810 - TRUNCATOR 2918 0.0230 (69/2996) 0 * Os_TE_682497 Os_TE_682497 Chr11 17665810 17665811 + TRUNCATOR 2918 0.0240 (72/2997) 0 * Os_TE_682498 Os_TE_682496 Chr11 17665261 17665262 - MuDR4_OS 7610 0.0040 (12/2983) 0 * Os_TE_682495 Os_TE_682495 Chr11 17665255 17665254 - MuDR4_OS 7610 0.0040 (12/2985) 0 * Os_TE_682496 Os_TE_682482 Chr11 17658761 17658760 + STOWAWAY51_OS 246 0.0261 (78/2986) 0 * Os_TE_682481 Os_TE_682481 Chr11 17658755 17658756 + ORSgTEMT01601591 242 0.0248 (74/2987) 0 * Os_TE_682482 Os_TE_682479 Chr11 17657735 17657736 + TRUNCATOR 2918 0.0355 (104/2926) 0 * * Os_TE_682478 Chr11 17657684 17657685 + INDITTO 263 0.3047 (904/2967) 0 * Os_TE_682477 Os_TE_682477 Chr11 17657682 17657681 - INDITTO 263 0.3051 (904/2963) 0 * Os_TE_682478 Os_TE_682448 Chr11 17649607 17649606 + ORSgTETNOOT00032 218 0.0041 (12/2954) 0 * * Os_TE_682447 Chr11 17649364 17649365 - OSTE20 496 0.0048 (14/2912) 0 * Os_TE_682446 Os_TE_682446 Chr11 17649359 17649358 + OSTE20 496 0.0055 (16/2911) 0 * Os_TE_682447 Os_TE_682443 Chr11 17648958 17648957 + ORSiTERTOOT00028 8600 0.2860 (750/2622) 0 * * Os_TE_682440 Chr11 17648310 17648311 - TRUNCATOR 2918 0.0314 (91/2897) 0 * * Os_TE_682434 Chr11 17647235 17647236 - INDITTO 263 0.0020 (6/2945) 0 * Os_TE_682433 Os_TE_682433 Chr11 17647233 17647232 + INDITTO 263 0.0017 (5/2948) 0 * Os_TE_682434 Os_TE_682416 Chr11 17645241 17645003 - ORSgTEMT01601432 239 0.3117 (901/2891) 1 Intact Os_TE_682415 Os_TE_682415 Chr11 17645003 17645241 + ORSgTEMT01602181 239 0.3164 (923/2917) 1 Intact Os_TE_682416 Os_TE_682413 Chr11 17644563 17644564 - INDITTO 263 0.0088 (26/2954) 0 * * Os_TE_682408 Chr11 17644326 17644325 + COPI2_LTR 4733 0.0003 (1/2974) 0 * * Os_TE_682404 Chr11 17643185 17643186 - RIREX_LTR 8828 0.0013 (4/2977) 0 * Os_TE_682403 Os_TE_682403 Chr11 17643181 17643180 + RIREX_LTR 8828 0.0013 (4/2985) 0 * Os_TE_682404 Os_TE_682400 Chr11 17641585 17641586 - DS-RICE2N 613 0.0013 (4/2991) 0 * * Os_TE_682398 Chr11 17640062 17640063 + ORSiTERTOOT00296 5553 0.0003 (1/2987) 0 * Os_TE_682397 Os_TE_682397 Chr11 17640058 17640057 - SC-3_LTR 5748 0.0003 (1/2992) 0 * Os_TE_682398 Os_TE_682377 Chr11 17625864 17625863 + SPMLIKE 10989 0.0003 (1/2982) 0 * * Os_TE_682364 Chr11 17616611 17614595 + OSTE14 885 0.7488 (2152/2874) 1 Intact Os_TE_682359 Os_TE_682361 Chr11 17615298 17615299 - COPIA2-LTR_OS 6433 0.0031 (7/2264) 0 * Os_TE_682360 Os_TE_682360 Chr11 17615294 17615293 + COPIA2-LTR_OS 6433 0.0026 (6/2278) 0 * Os_TE_682361 Os_TE_682359 Chr11 17614591 17616609 - OSTE14 885 0.7549 (2211/2929) 1 Intact Os_TE_682364 Os_TE_682355 Chr11 17613769 17613770 + TWIFBIG 3567 0.0283 (83/2934) 0 * * Os_TE_682350 Chr11 17611366 17611367 + RIRE3_LTR 12054 0.0010 (3/2907) 0 * * Os_TE_682338 Chr11 17608817 17608818 + ORSgTEMT02000020 195 0.2536 (533/2102) 0 * * Os_TE_682331 Chr11 17608279 17608519 - ORSgTEMT01600768 234 0.7519 (2237/2975) 1 Intact * Os_TE_682329 Chr11 17608053 17608054 - CLOUD 734 0.0373 (111/2978) 0 * Os_TE_682328 Os_TE_682328 Chr11 17608045 17608044 - CLOUD 734 0.0422 (105/2488) 0 * Os_TE_682329 Os_TE_682327 Chr11 17607822 17607821 - ORSgTEMT00901723 248 0.4796 (1414/2948) 0 * * Os_TE_682325 Chr11 17607770 17607771 - INDITTO 263 0.0007 (2/2979) 0 * Os_TE_682324 Os_TE_682324 Chr11 17607768 17607767 + INDITTO 263 0.0003 (1/2963) 0 * Os_TE_682325 Os_TE_682321 Chr11 17607571 17607572 - COPI2_LTR 4733 0.0003 (1/2977) 0 * Os_TE_682320 Os_TE_682320 Chr11 17607567 17607566 + COPI2_LTR 4733 0.0003 (1/2972) 0 * Os_TE_682321 Os_TE_682299 Chr11 17601767 17601766 - ORSiTETNOOT00107 906 0.0201 (60/2989) 0 * * Os_TE_682298 Chr11 17601747 17601746 + ORSgTEMT01600227 232 0.0007 (2/2933) 0 * * Os_TE_682297 Chr11 17601693 17601694 + NDNA1TNA_OS 334 0.2774 (830/2992) 0 * Os_TE_682296 Os_TE_682296 Chr11 17601691 17601690 - NDNA1TNA_OS 334 0.2979 (836/2806) 0 * Os_TE_682297 Os_TE_682294 Chr11 17601097 17601096 + SC-4_LTR 5218 0.0024 (6/2498) 0 * * Os_TE_682288 Chr11 17597159 17597158 - F569 228 0.0004 (1/2723) 0 * * Os_TE_682286 Chr11 17596360 17596359 - ORSgTEMT02900061 318 0.6760 (1947/2880) 0 * Os_TE_682285 Os_TE_682285 Chr11 17596359 17596360 - STOWAWAY12_OS 312 0.6654 (1857/2791) 0 * Os_TE_682286 Os_TE_682284 Chr11 17596222 17596221 + ORSgTEMT00100962 160 0.0010 (1/1012) 0 * * Os_TE_682269 Chr11 17584525 17584526 + RIRE2_LTR 11306 0.0028 (8/2854) 0 * Os_TE_682268 Os_TE_682268 Chr11 17584521 17584520 - RIRE2_LTR 11306 0.0031 (9/2865) 0 * Os_TE_682269 Os_TE_682261 Chr11 17582635 17582634 - LINE1-7_OS 7306 0.5683 (1693/2979) 0 * * Os_TE_682258 Chr11 17580150 17580151 + COPI2_LTR 4733 0.0020 (6/2993) 0 * * Os_TE_682257 Chr11 17578662 17578663 + RIRE2_LTR 11306 0.0033 (10/2990) 0 * Os_TE_682256 Os_TE_682256 Chr11 17578658 17578657 - RIRE2_LTR 11306 0.0033 (10/2989) 0 * Os_TE_682257 Os_TE_682249 Chr11 17575151 17575152 + TRUNCATOR 2918 0.0027 (8/2988) 0 * * Os_TE_682246 Chr11 17573750 17573751 + RIREX_LTR 8828 0.0027 (8/2999) 0 * Os_TE_682245 Os_TE_682245 Chr11 17573746 17573745 - RIREX_LTR 8828 0.0027 (8/2999) 0 * Os_TE_682246 Os_TE_682231 Chr11 17570412 17570411 - TRUNCATOR2_LTR 2904 0.0017 (5/2996) 0 * * Os_TE_682227 Chr11 17567853 17567639 - COWARD 200 0.5238 (1563/2984) 1 Intact Os_TE_682226 Os_TE_682226 Chr11 17567639 17567853 + COWARD-3 221 0.5251 (1567/2984) 1 Intact Os_TE_682227 Os_TE_682206 Chr11 17564665 17564666 + MDR2 6967 0.0018 (5/2819) 0 * Os_TE_682205 Os_TE_682205 Chr11 17564656 17564655 - MDR2 6967 0.0018 (5/2828) 0 * Os_TE_682206 Os_TE_682147 Chr11 17526900 17533140 + SC-6_LTR 6317 0.8219 (1398/1701) 1 Intact * Os_TE_682125 Chr11 17514898 17514899 - ORSiTETNOOT00107 906 0.0017 (5/2996) 0 * * Os_TE_682123 Chr11 17512774 17512775 + SZ-30_LTR 6377 0.4005 (1053/2629) 0 * * Os_TE_682115 Chr11 17510764 17510765 + RIREX_LTR 8828 0.0007 (2/2685) 0 * Os_TE_682114 Os_TE_682114 Chr11 17510760 17510759 - RIREX_LTR 8828 0.0007 (2/2790) 0 * Os_TE_682115 Os_TE_682110 Chr11 17509250 17509251 + COPIA2-LTR_OS 6433 0.0021 (6/2847) 0 * * Os_TE_682106 Chr11 17508454 17508455 + COPI2_LTR 4733 0.0025 (7/2823) 0 * Os_TE_682105 Os_TE_682105 Chr11 17508450 17508449 - COPI2_LTR 4733 0.0025 (7/2821) 0 * Os_TE_682106 Os_TE_682103 Chr11 17508310 17508309 - INDITTO 263 0.0004 (1/2817) 0 * * Os_TE_682100 Chr11 17508083 17508082 - MUDRN3_OS 903 0.0110 (31/2807) 0 * * Os_TE_682099 Chr11 17508011 17508012 - HARB-1_OS 5166 0.0004 (1/2664) 0 * Os_TE_682098 Os_TE_682098 Chr11 17508009 17508008 + HARB-1_OS 5166 0.0004 (1/2809) 0 * Os_TE_682099 Os_TE_682087 Chr11 17494439 17505781 + SPMLIKE 10989 0.4355 (1076/2471) -1 Intact * Os_TE_682085 Chr11 17493412 17493411 + ENSPM4_OS 11610 0.1196 (335/2800) 0 * * Os_TE_682069 Chr11 17488062 17488061 - COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * * Os_TE_682067 Chr11 17486610 17486611 - SZ-50_LTR 11691 0.0505 (83/1645) 0 * * Os_TE_682065 Chr11 17486595 17486596 - ORSgTEMT01900052 340 0.4553 (1325/2910) 0 * * Os_TE_682061 Chr11 17486212 17486472 - STOWAWAY13_OS 251 0.6074 (1536/2529) 1 Intact * Os_TE_682035 Chr11 17481477 17481478 + SPMLIKE 10989 0.0762 (222/2912) 0 * Os_TE_682034 Os_TE_682034 Chr11 17481475 17481474 - ORSgTETN00200001 10994 0.0723 (210/2906) 0 * Os_TE_682035 Os_TE_682033 Chr11 17481003 17481004 - COPIA2-LTR_OS 6433 0.0779 (228/2927) 0 * Os_TE_682032 Os_TE_682032 Chr11 17480999 17480998 + COPIA2-LTR_OS 6433 0.1375 (228/1658) 0 * Os_TE_682033 Os_TE_682031 Chr11 17480765 17480766 + F524 291 0.4592 (1339/2916) 0 * Os_TE_682030 Os_TE_682030 Chr11 17480750 17480749 - F524 291 0.4533 (1340/2956) 0 * Os_TE_682031 Os_TE_682029 Chr11 17480585 17480586 + COPI2_LTR 4733 0.0003 (1/2911) 0 * Os_TE_682028 Os_TE_682028 Chr11 17480581 17480580 - COPI2_LTR 4733 0.0003 (1/2925) 0 * Os_TE_682029 Os_TE_682027 Chr11 17480202 17480203 + SPMLIKE 10989 0.0027 (8/2910) 0 * Os_TE_682026 Os_TE_682026 Chr11 17480200 17480199 - ORSgTETN00200001 10994 0.0027 (8/2911) 0 * Os_TE_682027 Os_TE_682025 Chr11 17480082 17480081 + CACTA-B 1103 0.0024 (7/2915) 0 * Os_TE_682024 Os_TE_682024 Chr11 17480078 17480079 + ORSgTETN00200005 1121 0.0024 (7/2913) 0 * Os_TE_682025 Os_TE_682023 Chr11 17479981 17479982 - SZ-5LTR 1223 0.0007 (2/2915) 0 * Os_TE_682022 Os_TE_682022 Chr11 17479980 17479979 + COPIA1-LTR_OS 9292 0.0007 (2/2917) 0 * Os_TE_682023 Os_TE_682021 Chr11 17479722 17479723 + SPMLIKE 10989 0.0007 (2/2840) 0 * * Os_TE_681998 Chr11 17472595 17471213 + OSTE33 1012 0.2392 (699/2922) 1 Intact Os_TE_681997 Os_TE_681997 Chr11 17471213 17472595 - OSTE33 1012 0.2362 (689/2917) 1 Intact Os_TE_681998 Os_TE_681972 Chr11 17466466 17466467 + RETRO1_LTR 8314 0.1231 (359/2917) 0 * Os_TE_681971 Os_TE_681971 Chr11 17466462 17466461 - RETRO2A_LTR 12895 0.1198 (349/2912) 0 * Os_TE_681972 Os_TE_681957 Chr11 17463523 17463522 - RETROSAT2LTR 12796 0.1709 (501/2931) 0 * * Os_TE_681946 Chr11 17461733 17455310 + COPIA2-LTR_OS 6433 0.2378 (696/2927) 1 Intact Os_TE_681939 Os_TE_681939 Chr11 17455310 17461733 - COPIA2-LTR_OS 6433 0.2401 (705/2936) 1 Intact Os_TE_681946 Os_TE_681938 Chr11 17454053 17454054 - SZ-55_LTR 10318 0.0024 (7/2932) 0 * Os_TE_681937 Os_TE_681937 Chr11 17454049 17454048 + SZ-55_LTR 10318 0.0024 (7/2935) 0 * Os_TE_681938 Os_TE_681908 Chr11 17441697 17441696 - RETROSAT4_LTR 13504 0.0027 (7/2566) 0 * * Os_TE_681890 Chr11 17439918 17439919 + KRISPIE 956 0.0003 (1/2997) 0 * * Os_TE_681889 Chr11 17439765 17439766 + CACTA-M 1129 0.0274 (82/2995) 0 * Os_TE_681888 Os_TE_681888 Chr11 17439763 17439762 - ORSgTETN00200001 10994 0.0274 (82/2997) 0 * Os_TE_681889 Os_TE_681886 Chr11 17438574 17438575 + ORSiTERTOOT00074 4935 0.0003 (1/2998) 0 * Os_TE_681885 Os_TE_681885 Chr11 17438570 17438569 - ORSiTERTOOT00074 4935 0.0003 (1/2996) 0 * Os_TE_681886 Os_TE_681884 Chr11 17438512 17438511 + ORSiTERT00100080 6173 0.0029 (8/2801) 0 * * Os_TE_681882 Chr11 17437260 17437259 + ORSgTEMT01602181 239 0.0003 (1/2885) 0 * Os_TE_681881 Os_TE_681881 Chr11 17437257 17437258 - ORSgTEMT01601432 239 0.0003 (1/2980) 0 * Os_TE_681882 Os_TE_681875 Chr11 17432065 17432066 - RIREX_LTR 8828 0.0080 (24/2998) 0 * Os_TE_681874 Os_TE_681874 Chr11 17432061 17432060 + RIREX_LTR 8828 0.0091 (23/2522) 0 * Os_TE_681875 Os_TE_681855 Chr11 17427109 17427108 - COPIA2-LTR_OS 6433 0.0023 (7/2997) 0 * * Os_TE_681852 Chr11 17426165 17426166 - SZ-55_LTR 10318 0.0003 (1/2999) 0 * Os_TE_681851 Os_TE_681851 Chr11 17426161 17426160 + SZ-55_LTR 10318 0.0003 (1/2997) 0 * Os_TE_681852 Os_TE_681834 Chr11 17418803 17418804 + ORSiTERTOOT00226 792 0.0830 (22/265) -1 * * Os_TE_681816 Chr11 17416642 17416643 + SEVERIN-2 1952 0.0282 (84/2984) 0 * * Os_TE_681805 Chr11 17414973 17414974 + SPMLIKE 10989 0.0010 (3/2986) 0 * Os_TE_681804 Os_TE_681804 Chr11 17414971 17414970 - ORSgTETN00200001 10994 0.0010 (3/2985) 0 * Os_TE_681805 Os_TE_681801 Chr11 17411497 17411498 + SZ-55_LTR 10318 0.0023 (7/2990) 0 * Os_TE_681800 Os_TE_681800 Chr11 17411493 17411492 - SZ-55_LTR 10318 0.0027 (8/2986) 0 * Os_TE_681801 Os_TE_681799 Chr11 17410823 17405333 + ORSiTERTOOT00329 5144 0.0771 (230/2985) 1 Intact Os_TE_681798 Os_TE_681798 Chr11 17405333 17410823 - ORSiTERTOOT00329 5144 0.0821 (244/2973) 1 Intact Os_TE_681799 Os_TE_681786 Chr11 17401656 17401657 + TRUNCATOR 2918 0.0126 (26/2058) 0 * * Os_TE_681775 Chr11 17397885 17397884 - COPIA2-LTR_OS 6433 0.0003 (1/2942) 0 * * Os_TE_681774 Chr11 17397469 17397470 + STOWAWAY51_OS 246 0.0040 (1/253) 0 * * Os_TE_681755 Chr11 17389450 17389451 - OSR3_LTR 5201 0.0017 (5/2997) 0 * Os_TE_681754 Os_TE_681754 Chr11 17389446 17389445 + OSR3_LTR 5201 0.0017 (5/2995) 0 * Os_TE_681755 Os_TE_681751 Chr11 17388310 17388309 - ORSgTEMT01600639 228 0.1965 (587/2988) 0 * * Os_TE_681746 Chr11 17387473 17387472 + ORSgTEMT00300063 413 0.2460 (736/2992) 0 * * Os_TE_681745 Chr11 17384809 17384810 + ORSgTETNOOT00908 242 0.0003 (1/2981) 0 * * Os_TE_681710 Chr11 17368095 17356503 - SZ-50_LTR 11691 0.2995 (884/2952) 1 Intact Os_TE_681689 Os_TE_681689 Chr11 17356503 17368095 + RETROSOR2_LTR 11699 0.3001 (891/2969) 1 Intact Os_TE_681710 Os_TE_681681 Chr11 17351419 17351177 - ORSgTEMT00901723 248 0.5394 (1607/2979) 1 Intact * Os_TE_681676 Chr11 17350236 17350237 + STOWAWAY11_OS 292 0.4623 (1343/2905) 0 * Os_TE_681675 Os_TE_681675 Chr11 17350235 17350234 - STOWAWAY11_OS 292 0.4806 (1422/2959) 0 * Os_TE_681676 Os_TE_681668 Chr11 17349453 17349452 + ORSgTEMT01601122 212 0.4530 (1316/2905) 0 * * Os_TE_681663 Chr11 17347430 17347202 + ORSgTEMT01602119 229 0.4729 (1376/2910) 1 Intact Os_TE_681661 Os_TE_681661 Chr11 17347192 17347430 + ORSgTEMT01601525 239 0.7680 (1367/1780) 1 Intact Os_TE_681663 Os_TE_681660 Chr11 17346605 17346604 + RETROSAT4_LTR 13504 0.0003 (1/2976) 0 * * Os_TE_681657 Chr11 17346555 17346216 + ORSgTEMT00101341 314 0.4663 (1384/2968) 1 Intact Os_TE_681655 Os_TE_681655 Chr11 17346214 17346555 + ORSgTEMT00100272 356 0.5098 (1382/2711) 1 Intact Os_TE_681657 Os_TE_681652 Chr11 17345851 17345852 + MERMITE18D 1491 0.5475 (1597/2917) 0 * * Os_TE_681636 Chr11 17339971 17339972 - GYPSY1-LTR_OS 8900 0.5510 (1637/2971) 0 * Os_TE_681635 Os_TE_681635 Chr11 17339967 17339966 + GYPSY-B_LTR 7068 0.5350 (1553/2903) 0 * Os_TE_681636 Os_TE_681634 Chr11 17339790 17339789 - ORSgTEMT01700029 143 0.0132 (19/1439) 0 * Os_TE_681633 Os_TE_681633 Chr11 17339783 17339784 - ORSgTEMT01701728 154 0.5478 (1622/2961) 0 * Os_TE_681634 Os_TE_681632 Chr11 17338329 17337973 + ORSgTEMT00100291 345 0.4712 (1393/2956) 1 Intact Os_TE_681624 Os_TE_681631 Chr11 17338322 17337973 - ORSgTEMT00100363 345 0.4680 (1388/2966) 1 Intact Os_TE_681626 Os_TE_681626 Chr11 17337979 17338320 + ORSgTEMT00100883 334 0.4690 (1394/2972) 1 Intact Os_TE_681631 Os_TE_681624 Chr11 17337971 17338315 - ORSgTEMT00100813 345 0.4668 (1387/2971) 1 Intact Os_TE_681632 Os_TE_681613 Chr11 17329483 17329482 + MuDR2_OS 6770 0.0004 (1/2656) 0 * * Os_TE_681609 Chr11 17328108 17328107 + STOWAWAY47_OS 148 0.4438 (1311/2954) 0 * * Os_TE_681608 Chr11 17327213 17327214 - RIREX_LTR 8828 0.0003 (1/2990) 0 * * Os_TE_681606 Chr11 17325545 17325546 - ORSgTEMT02900061 318 0.4514 (1329/2944) 0 * * Os_TE_681599 Chr11 17322365 17322366 + SZ-58LTR 114 0.4613 (1359/2946) 0 * Os_TE_681598 Os_TE_681598 Chr11 17322361 17322360 - SZ-58LTR 114 0.4576 (1361/2974) 0 * Os_TE_681599 Os_TE_681591 Chr11 17319787 17319788 + AMYLTP 383 0.0024 (7/2918) 0 * Os_TE_681590 Os_TE_681590 Chr11 17319778 17319777 - AMYLTP 383 0.0024 (7/2893) 0 * Os_TE_681591 Os_TE_681589 Chr11 17318697 17318698 - MuDR4_OS 7610 0.0007 (2/2950) 0 * Os_TE_681588 Os_TE_681588 Chr11 17318690 17318689 - MuDR4_OS 7610 0.0007 (2/2948) 0 * Os_TE_681589 Os_TE_681572 Chr11 17317706 17317707 + EnSpm-13_OS 11171 0.0014 (4/2953) 0 * Os_TE_681571 Os_TE_681571 Chr11 17317703 17317702 - EnSpm-13_OS 11171 0.0014 (4/2962) 0 * Os_TE_681572 Os_TE_681563 Chr11 17316355 17314864 - ORSiCMCM00100013 9728 0.5739 (1685/2936) 1 Intact Os_TE_681554 Os_TE_681554 Chr11 17314864 17316355 + ORSiCMCM00100013 9728 0.5658 (1690/2987) 1 Intact Os_TE_681563 Os_TE_681553 Chr11 17314741 17314742 + RETROSAT2LTR 12796 0.0354 (103/2908) 0 * Os_TE_681552 Os_TE_681552 Chr11 17314739 17314738 - RETROSAT2LTR 12796 0.0394 (116/2945) 0 * Os_TE_681553 Os_TE_681551 Chr11 17314011 17314012 + ORSiTERTOOT00074 4935 0.0003 (1/2932) 0 * Os_TE_681550 Os_TE_681550 Chr11 17314007 17314006 - ORSiTERTOOT00074 4935 0.0003 (1/2967) 0 * Os_TE_681551 Os_TE_681548 Chr11 17312645 17312646 - ORSgTEMT00502257 142 0.4555 (1361/2988) 0 * * Os_TE_681544 Chr11 17312054 17312295 - ORSiTERTOOT00273 5419 0.5649 (1681/2976) 1 Intact * Os_TE_681543 Chr11 17311776 17311777 + ORSgTEMT00500852 140 0.4552 (1362/2992) 0 * * Os_TE_681542 Chr11 17311739 17311738 + ORSiTERTOOT00226 792 0.0003 (1/2958) 0 * * Os_TE_681541 Chr11 17311705 17311706 + ORSiTERTOOT00226 792 0.0023 (7/2986) 0 * Os_TE_681540 Os_TE_681540 Chr11 17311701 17311700 - SZ-22_LTR 4403 0.0023 (7/2998) 0 * Os_TE_681541 Os_TE_681511 Chr11 17305767 17305768 - ORSgTEMT03800066 376 0.4868 (1293/2656) 0 * * Os_TE_681509 Chr11 17305351 17305577 + ORSgTETNOOT00670 249 0.7194 (1195/1661) 1 Intact * Os_TE_681491 Chr11 17300409 17300410 - MPING 430 0.0007 (2/2922) 0 * Os_TE_681490 Os_TE_681490 Chr11 17300407 17300406 + MPING 430 0.0007 (2/2886) 0 * Os_TE_681491 Os_TE_681489 Chr11 17300254 17300014 + ORSgTEMT01602181 239 0.5562 (1649/2965) 1 Intact * Os_TE_681486 Chr11 17298618 17298619 - MuDR4_OS 7610 0.5442 (1318/2422) -1 * Os_TE_681485 Os_TE_681485 Chr11 17298611 17298610 - MuDR4_OS 7610 0.4673 (1158/2478) 0 * Os_TE_681486 Os_TE_681483 Chr11 17298183 17297799 + AMYLTP 383 0.5765 (1575/2732) 1 Intact * Os_TE_681477 Chr11 17297537 17297538 - ORSgTERT00201216 11284 0.0024 (4/1661) 0 * Os_TE_681476 Os_TE_681476 Chr11 17297533 17297532 - RIRE2_LTR 11306 0.0015 (4/2747) 0 * Os_TE_681477 Os_TE_681472 Chr11 17291529 17291530 + RETROSAT2LTR 12796 0.4447 (1319/2966) 0 * Os_TE_681471 Os_TE_681471 Chr11 17291527 17291526 - RETROSAT2LTR 12796 0.4585 (1371/2990) 0 * Os_TE_681472 Os_TE_681462 Chr11 17288456 17288457 - NDNA1TNA_OS 334 0.0010 (3/2938) 0 * Os_TE_681461 Os_TE_681461 Chr11 17288455 17288454 + NDNA1TNA_OS 334 0.0010 (3/2941) 0 * Os_TE_681462 Os_TE_681459 Chr11 17288268 17288269 - ORSgTEMT01900024 348 0.4538 (1346/2966) 0 * * Os_TE_681449 Chr11 17286142 17286143 + ORSgTETNOOT01834 251 0.0010 (3/2933) 0 * Os_TE_681448 Os_TE_681448 Chr11 17286140 17286139 + ORSgTETNOOT01834 251 0.0010 (3/2982) 0 * Os_TE_681449 Os_TE_681443 Chr11 17283013 17283012 - ORSgTEMT00900892 250 0.6537 (1942/2971) 0 * Os_TE_681442 Os_TE_681442 Chr11 17283009 17283010 + ORSgTEMT00901798 232 0.6507 (1924/2957) 0 * Os_TE_681443 Os_TE_681439 Chr11 17282711 17282710 - STOWAWAY51_OS 246 0.6047 (1580/2613) 0 * * Os_TE_681429 Chr11 17279727 17279726 + OSTE18 129 0.6326 (1810/2861) 0 * * Os_TE_681428 Chr11 17279726 17279727 - NDNA1TNA_OS 334 0.0021 (6/2820) 0 * * Os_TE_681425 Chr11 17279305 17279006 - ORSgTEMT00100560 340 0.4203 (1089/2591) 1 Intact Os_TE_681420 Os_TE_681420 Chr11 17278966 17279278 + ORSgTEMT00101588 319 0.4687 (1047/2234) 1 Intact Os_TE_681425 Os_TE_681418 Chr11 17278632 17278633 - NDNA1TNA_OS 334 0.6177 (1690/2736) 0 * * Os_TE_681414 Chr11 17278025 17278026 + RIREX_LTR 8828 0.0843 (229/2718) 0 * * Os_TE_681407 Chr11 17276930 17276931 + RIREX_LTR 8828 0.4593 (1365/2972) 0 * Os_TE_681406 Os_TE_681406 Chr11 17276926 17276925 - RIREX_LTR 8828 0.4549 (1322/2906) 0 * Os_TE_681407 Os_TE_681405 Chr11 17276826 17276827 - COPI1_LTR 4721 0.6464 (1903/2944) 0 * * Os_TE_681400 Chr11 17275939 17275940 - TELIA 141 0.6181 (1688/2731) 0 * Os_TE_681399 Os_TE_681399 Chr11 17275931 17275930 + TELIA 141 0.6461 (1868/2891) 0 * Os_TE_681400 Os_TE_681398 Chr11 17275538 17275539 + RETRO2_LTR 12874 0.0054 (6/1102) 0 * * Os_TE_681386 Chr11 17271389 17271195 - COWARD-3 221 0.2839 (837/2948) 1 Intact Os_TE_681385 Os_TE_681385 Chr11 17271194 17271389 + COWARD-3 221 0.2851 (841/2950) 1 Intact Os_TE_681386 Os_TE_681372 Chr11 17265156 17265157 - ORSiTETNOOT00134 607 0.0003 (1/2986) 0 * Os_TE_681371 Os_TE_681371 Chr11 17265149 17265148 + TWIF 586 0.0003 (1/2991) 0 * Os_TE_681372 Os_TE_681369 Chr11 17264567 17264568 + SC-8_LTR 4951 0.0013 (4/2980) 0 * Os_TE_681368 Os_TE_681368 Chr11 17264563 17264562 - SC-8_LTR 4951 0.0013 (4/2990) 0 * Os_TE_681369 Os_TE_681344 Chr11 17257055 17256861 - ORSgTEMT01602031 238 0.4299 (1227/2854) 1 Intact * Os_TE_681341 Chr11 17256553 17256554 + COPIA2-LTR_OS 6433 0.0007 (1/1363) 0 * Os_TE_681340 Os_TE_681340 Chr11 17256549 17256548 - COPIA2-LTR_OS 6433 0.0004 (1/2753) 0 * Os_TE_681341 Os_TE_681335 Chr11 17255630 17256177 - GYPSY1-LTR_OS 8900 0.5419 (1527/2818) 1 Solo_LTR * Os_TE_681330 Chr11 17254856 17254458 + OSTE9 421 0.1904 (281/1476) 1 Intact * Os_TE_681326 Chr11 17253248 17253249 - TYPEM 227 0.1418 (190/1340) 0 * Os_TE_681325 Os_TE_681325 Chr11 17253247 17253246 - ORSgTEMT02400179 221 0.1702 (243/1428) 0 * Os_TE_681326 Os_TE_681321 Chr11 17251880 17251881 - RIRE2_LTR 11306 0.0007 (2/2772) 0 * Os_TE_681320 Os_TE_681320 Chr11 17251876 17251875 + RIRE2_LTR 11306 0.0007 (2/2942) 0 * Os_TE_681321 Os_TE_681319 Chr11 17251864 17251863 - RIREX_LTR 8828 0.0004 (1/2780) 0 * * Os_TE_681317 Chr11 17251754 17251753 - OSTONOR1_LTR 6440 0.3254 (902/2772) 0 * * Os_TE_681316 Chr11 17250164 17250165 + RIREX_LTR 8828 0.0007 (2/2979) 0 * Os_TE_681315 Os_TE_681315 Chr11 17250160 17250159 - RIREX_LTR 8828 0.0007 (2/2984) 0 * Os_TE_681316 Os_TE_681314 Chr11 17249207 17248991 - ORSgTEMT03400004 256 0.6099 (1546/2535) 1 Intact * Os_TE_681284 Chr11 17238409 17238410 - MuDR3_OS 8604 0.0003 (1/2994) 0 * * Os_TE_681271 Chr11 17235479 17235480 + INDITTO 263 0.0247 (74/2997) 0 * Os_TE_681270 Os_TE_681270 Chr11 17235477 17235476 - INDITTO 263 0.0240 (72/2997) 0 * Os_TE_681271 Os_TE_681256 Chr11 17228942 17228943 - SZ-9LTR 965 0.0003 (1/2983) 0 * Os_TE_681255 Os_TE_681255 Chr11 17228938 17228937 + SZ-9LTR 965 0.0003 (1/2984) 0 * Os_TE_681256 Os_TE_681252 Chr11 17227302 17227303 + RETROSAT2LTR 12796 0.5879 (1705/2900) 0 * Os_TE_681251 Os_TE_681251 Chr11 17227300 17227299 - RETROSAT2LTR 12796 0.6061 (1808/2983) 0 * Os_TE_681252 Os_TE_681230 Chr11 17216109 17216108 + ORSgTEMT01601591 242 0.0007 (2/2970) 0 * Os_TE_681229 Os_TE_681229 Chr11 17216103 17216104 + STOWAWAY51_OS 246 0.0007 (2/2974) 0 * Os_TE_681230 Os_TE_681226 Chr11 17214562 17214563 - TELIA 141 0.0003 (1/2985) 0 * * Os_TE_681224 Chr11 17214144 17214143 - ORSgTEMT02400246 177 0.0757 (225/2972) 0 * * Os_TE_681222 Chr11 17213683 17213684 + CASTAWAY 364 0.0252 (75/2974) 0 * Os_TE_681221 Os_TE_681221 Chr11 17213682 17213681 - ORSgTEMT00600085 364 0.0235 (70/2978) 0 * Os_TE_681222 Os_TE_681211 Chr11 17208355 17208354 - ORSgTEMT01701591 154 0.0023 (7/2986) 0 * Os_TE_681210 Os_TE_681210 Chr11 17208352 17208353 + ORSgTEMT01700702 154 0.0023 (7/2988) 0 * Os_TE_681211 Os_TE_681206 Chr11 17206801 17206800 + ORSiTETNOOT00170 3566 0.0764 (217/2841) 0 * * Os_TE_681198 Chr11 17203376 17203377 + ORSgTETNOOT00323 125 0.0745 (220/2955) 0 * * Os_TE_681191 Chr11 17202096 17202097 + MERMITED 1572 0.0720 (211/2929) 0 * * Os_TE_681180 Chr11 17198249 17198250 - ORSgTEMT01600244 239 0.0024 (7/2925) 0 * * Os_TE_681174 Chr11 17197000 17197001 - ORSgTETN00200001 10994 0.0013 (4/2984) 0 * Os_TE_681173 Os_TE_681173 Chr11 17196998 17196997 + SPMLIKE 10989 0.0020 (6/2985) 0 * Os_TE_681174 Os_TE_681165 Chr11 17196252 17196253 + ORSiTERTOOT00226 792 0.0027 (8/2970) 0 * Os_TE_681164 Os_TE_681164 Chr11 17196248 17196247 - SZ-22_LTR 4403 0.0027 (8/2970) 0 * Os_TE_681165 Os_TE_681162 Chr11 17195915 17195914 - SEVERIN-2 1952 0.0753 (221/2933) 0 * * Os_TE_681161 Chr11 17195050 17195051 - ORSgTEMT01700794 153 0.0022 (6/2746) 0 * Os_TE_681160 Os_TE_681160 Chr11 17195048 17195047 - ORSgTEMT01700299 212 0.0025 (7/2747) 0 * Os_TE_681161 Os_TE_681158 Chr11 17194897 17183819 + SPMLIKE 10989 0.3101 (849/2738) 1 Intact * Os_TE_681153 Chr11 17183796 17183795 - SZ-67LTR 1540 0.0006 (1/1811) 0 * * Os_TE_681151 Chr11 17182193 17182192 + ORSgTEMT01602181 239 0.1987 (589/2964) 0 * Os_TE_681150 Os_TE_681150 Chr11 17182192 17182193 + ORSgTEMT01602288 241 0.2240 (518/2313) 0 * Os_TE_681151 Os_TE_681133 Chr11 17178252 17177969 + YOUREN 286 0.7937 (2351/2962) 1 Intact Os_TE_681131 Os_TE_681131 Chr11 17177968 17178248 - YOUREN 286 0.7984 (2372/2971) 1 Intact Os_TE_681133 Os_TE_681129 Chr11 17177760 17177761 + COPI1_LTR 4721 0.2251 (673/2990) 0 * * Os_TE_681109 Chr11 17170177 17176814 + RIRE5-LTR_OS 6427 0.8697 (2370/2725) 1 Intact * Os_TE_681092 Chr11 17161649 17164974 - RIRE3A_LTR 10580 0.8927 (1714/1920) 1 Solo_LTR * Os_TE_681066 Chr11 17148179 17159033 - RIRE2_LTR 11306 0.5952 (1776/2984) 1 Intact * Os_TE_681058 Chr11 17145493 17145492 + TRUNCATOR 2918 0.0516 (110/2132) 0 * * Os_TE_681019 Chr11 17134346 17134345 - ORSgTEMT00900099 250 0.5086 (1243/2444) 0 * Os_TE_681018 Os_TE_681018 Chr11 17134342 17134343 - ORSgTEMT00901723 248 0.5055 (1240/2453) 0 * Os_TE_681019 Os_TE_681014 Chr11 17133714 17133454 + STOWAWAY13_OS 251 0.5463 (1275/2334) 1 Intact Os_TE_681010 Os_TE_681010 Chr11 17133454 17133714 - STOWAWAY13_OS 251 0.5082 (1264/2487) 1 Intact Os_TE_681014 Os_TE_681008 Chr11 17133388 17133389 - SC-4_LTR 5218 0.0976 (243/2491) 0 * Os_TE_681007 Os_TE_681007 Chr11 17133384 17133383 + SC-4_LTR 5218 0.0976 (243/2489) 0 * Os_TE_681008 Os_TE_681000 Chr11 17126287 17126060 - STOWAWAY41_OS 264 0.5135 (1065/2074) 1 Intact * Os_TE_680994 Chr11 17124829 17124828 + DITTO 244 0.1455 (184/1265) 0 * Os_TE_680993 Os_TE_680993 Chr11 17124828 17124829 - ORSgTEMT00900760 239 0.4481 (863/1926) 0 * Os_TE_680994 Os_TE_680984 Chr11 17119857 17119858 + TRUNCATOR2_LTR 2904 0.0112 (33/2955) 0 * * Os_TE_680979 Chr11 17117099 17115634 - EnSpm-N2_OS 1282 0.8053 (2386/2963) 1 Intact * Os_TE_680978 Chr11 17116743 17116744 + TWIFBIG 3567 0.0010 (2/1985) 0 * Os_TE_680977 Os_TE_680977 Chr11 17116736 17116735 - ORSiTETNOOT00216 3569 0.0005 (1/2212) 0 * Os_TE_680978 Os_TE_680976 Chr11 17116714 17116715 - ORSiTETNOOT00216 3569 0.1022 (227/2222) 0 * Os_TE_680975 Os_TE_680975 Chr11 17116707 17116706 + TWIFBIG 3567 0.1249 (250/2002) 0 * Os_TE_680976 Os_TE_680972 Chr11 17115318 17115317 + ORSgTEMT01601591 242 0.0054 (16/2959) 0 * Os_TE_680971 Os_TE_680971 Chr11 17115315 17115316 + ORSgTEMT01601591 242 0.0057 (17/2983) 0 * Os_TE_680972 Os_TE_680955 Chr11 17107869 17107870 - ORSiTETNOOT00200 3563 0.0362 (106/2930) 0 * * Os_TE_680954 Chr11 17107868 17107867 + RIRE3_LTR 12054 0.0007 (2/2939) 0 * * Os_TE_680953 Chr11 17107862 17107861 + TWIF 586 0.0369 (108/2930) 0 * * Os_TE_680950 Chr11 17106568 17106569 - RETROSAT2LTRA 3112 0.0007 (2/2975) 0 * * Os_TE_680949 Chr11 17106061 17104663 + MERMITE18E 1528 0.4997 (1454/2910) 1 Intact Os_TE_680948 Os_TE_680948 Chr11 17104663 17106059 - MERMITE18E 1528 0.6049 (1563/2584) 1 Intact Os_TE_680949 Os_TE_680947 Chr11 17103013 17103014 - ORSgTETN00200001 10994 0.0006 (1/1552) 0 * Os_TE_680946 Os_TE_680946 Chr11 17103011 17103010 + SPMLIKE 10989 0.0013 (2/1567) 0 * Os_TE_680947 Os_TE_680907 Chr11 17087150 17087149 + SEVERIN-2 1952 0.4949 (780/1576) 0 * * Os_TE_680902 Chr11 17085596 17084434 - CACTA-I 1124 0.6512 (1555/2388) 1 Intact * Os_TE_680888 Chr11 17081834 17081835 + ORSgTEMT01602637 232 0.2893 (855/2955) 0 * * Os_TE_680887 Chr11 17081679 17081680 - COPIA2-LTR_OS 6433 0.0003 (1/2979) 0 * Os_TE_680886 Os_TE_680886 Chr11 17081675 17081674 + COPIA2-LTR_OS 6433 0.0003 (1/2900) 0 * Os_TE_680887 Os_TE_680885 Chr11 17081010 17081009 - ORSgTEMT01601493 303 0.5159 (1460/2830) 0 * * Os_TE_680879 Chr11 17077171 17076946 - STOWAWAY43_OS 233 0.3161 (932/2948) 1 Intact Os_TE_680874 Os_TE_680874 Chr11 17076946 17077171 + STOWAWAY43_OS 233 0.3120 (932/2987) 1 Intact Os_TE_680879 Os_TE_680866 Chr11 17070127 17070128 - SC-3_LTR 5748 0.0027 (8/2990) 0 * Os_TE_680865 Os_TE_680865 Chr11 17070123 17070122 + ORSiTERTOOT00296 5553 0.0027 (8/2993) 0 * Os_TE_680866 Os_TE_680864 Chr11 17068579 17068578 - COPIA2-LTR_OS 6433 0.0003 (1/2981) 0 * * Os_TE_680863 Chr11 17068302 17068303 + ORSiTERTOOT00296 5553 0.1915 (571/2981) 0 * Os_TE_680862 Os_TE_680862 Chr11 17068298 17068297 - SC-3_LTR 5748 0.1902 (568/2986) 0 * Os_TE_680863 Os_TE_680860 Chr11 17066850 17066851 + SC-8_LTR 4951 0.0003 (1/2988) 0 * Os_TE_680859 Os_TE_680859 Chr11 17066846 17066845 - SC-8_LTR 4951 0.0003 (1/2993) 0 * Os_TE_680860 Os_TE_680858 Chr11 17066633 17066634 + ORSiTERTOOT00296 5553 0.0003 (1/2994) 0 * Os_TE_680857 Os_TE_680857 Chr11 17066629 17066628 - SC-3_LTR 5748 0.0003 (1/2995) 0 * Os_TE_680858 Os_TE_680847 Chr11 17062352 17062624 + ORSgTEMT00100994 341 0.3205 (919/2867) 1 Intact * Os_TE_680845 Chr11 17061920 17061723 + ORSgTEMT01701829 198 0.3350 (895/2672) 1 Intact * Os_TE_680836 Chr11 17057293 17057294 - SC-8_LTR 4951 0.0010 (3/2986) 0 * Os_TE_680835 Os_TE_680835 Chr11 17057289 17057288 + SC-8_LTR 4951 0.0010 (3/2988) 0 * Os_TE_680836 Os_TE_680790 Chr11 17039278 17039279 - SC-3_LTR 5748 0.0020 (6/2997) 0 * * Os_TE_680786 Chr11 17036103 17036102 - ORSiTETNOOT00216 3569 0.0020 (6/2990) 0 * * Os_TE_680785 Chr11 17035385 17035386 + RETRO2_LTR 12874 0.0013 (4/2989) 0 * Os_TE_680784 Os_TE_680784 Chr11 17035381 17035380 - SZLTR 1249 0.0013 (4/2993) 0 * Os_TE_680785 Os_TE_680738 Chr11 17023132 17023131 + CACTA-B 1103 0.0014 (4/2939) 0 * Os_TE_680737 Os_TE_680737 Chr11 17023131 17023132 - CACTA-H 1152 0.0014 (4/2937) 0 * Os_TE_680738 Os_TE_680717 Chr11 17020092 17020093 - TELIA 141 0.0003 (1/2988) 0 * Os_TE_680716 Os_TE_680716 Chr11 17020084 17020083 + TELIA 141 0.0003 (1/2988) 0 * Os_TE_680717 Os_TE_680634 Chr11 16988946 16988947 + COPI2_LTR 4733 0.0081 (24/2971) 0 * Os_TE_680633 Os_TE_680633 Chr11 16988942 16988941 - COPI2_LTR 4733 0.0077 (23/2968) 0 * Os_TE_680634 Os_TE_680632 Chr11 16987658 16987657 - ORSgTEMT02400179 221 0.0454 (135/2974) 0 * * Os_TE_680610 Chr11 16981154 16981155 - ORSgTETNOOT00368 257 0.0274 (74/2705) 0 * Os_TE_680609 Os_TE_680609 Chr11 16981146 16981145 - INDITTO 263 0.0263 (73/2771) 0 * Os_TE_680610 Os_TE_680608 Chr11 16981145 16981146 - INDITTO 263 0.0144 (40/2776) 0 * * Os_TE_680561 Chr11 16967691 16967692 - TNR2A 152 0.0580 (160/2759) 0 * Os_TE_680560 Os_TE_680560 Chr11 16967675 16967674 - TNR2A 152 0.0577 (158/2738) 0 * Os_TE_680561 Os_TE_680548 Chr11 16965420 16965419 + RIREX_LTR 8828 0.0007 (2/2817) 0 * * Os_TE_680527 Chr11 16958897 16958898 + DS-RICE3N 525 0.0003 (1/2951) 0 * * Os_TE_680522 Chr11 16958192 16958193 - TRUNCATOR 2918 0.1167 (173/1482) 0 * * Os_TE_680517 Chr11 16957218 16957219 - AMYLTP 383 0.0007 (2/2735) 0 * Os_TE_680516 Os_TE_680516 Chr11 16957210 16957209 + AMYLTP 383 0.0007 (2/2736) 0 * Os_TE_680517 Os_TE_680487 Chr11 16947077 16947078 - ORSgTETNOOT02565 240 0.0790 (235/2973) 0 * * Os_TE_680480 Chr11 16942166 16942165 + NDNA1TNA_OS 334 0.0007 (2/2873) 0 * * Os_TE_680469 Chr11 16931805 16931804 + ORSgTEMT00501279 126 0.0003 (1/2963) 0 * * Os_TE_680437 Chr11 16923430 16923431 + SZ-40LTR 2465 0.0003 (1/2981) 0 * Os_TE_680436 Os_TE_680436 Chr11 16923426 16923425 - SZ-40LTR 2465 0.0003 (1/2976) 0 * Os_TE_680437 Os_TE_680395 Chr11 16900118 16900119 + COPIA2-LTR_OS 6433 0.0004 (1/2829) 0 * Os_TE_680394 Os_TE_680394 Chr11 16900114 16900113 - COPIA2-LTR_OS 6433 0.0004 (1/2828) 0 * Os_TE_680395 Os_TE_680389 Chr11 16895413 16895262 + ORSgTEMT01701104 154 0.5664 (627/1107) 1 Intact Os_TE_680387 Os_TE_680387 Chr11 16895260 16895413 + ORSgTEMT01701016 130 0.5723 (625/1092) 1 Intact Os_TE_680389 Os_TE_680385 Chr11 16894774 16894775 + MPING 430 0.0018 (2/1093) 0 * Os_TE_680384 Os_TE_680384 Chr11 16894772 16894771 - MPING 430 0.0018 (2/1094) 0 * Os_TE_680385 Os_TE_680376 Chr11 16887583 16886877 + ORSiTETN00100018 738 0.7248 (603/832) 1 Intact * Os_TE_680373 Chr11 16886776 16886777 - NDNA1TNA_OS 334 0.0113 (7/621) 0 * Os_TE_680372 Os_TE_680372 Chr11 16886774 16886773 + NDNA1TNA_OS 334 0.0269 (17/631) 0 * Os_TE_680373 Os_TE_680365 Chr11 16881787 16881786 - ORSgTEMT01601432 239 0.0159 (10/628) 0 * Os_TE_680364 Os_TE_680364 Chr11 16881784 16881785 + ORSgTEMT01602181 239 0.0204 (13/636) 0 * Os_TE_680365 Os_TE_680357 Chr11 16879255 16879256 + TRUNCATOR 2918 0.0082 (4/490) 0 * * Os_TE_680354 Chr11 16877757 16877756 - SZ-37_LTR 12001 0.0146 (7/481) 0 * * Os_TE_680351 Chr11 16876925 16876924 - ORSiCMCM00100013 9728 0.0264 (13/492) 0 * * Os_TE_680347 Chr11 16873982 16873983 - RIREX_LTR 8828 0.0038 (11/2915) 0 * Os_TE_680346 Os_TE_680346 Chr11 16873978 16873977 + RIREX_LTR 8828 0.0041 (12/2918) 0 * Os_TE_680347 Os_TE_680341 Chr11 16873593 16873594 - ORSgTETN00200001 10994 0.1512 (438/2897) 0.14 * Os_TE_680340 Os_TE_680340 Chr11 16873591 16873590 + SPMLIKE 10989 0.1477 (423/2864) 0 * Os_TE_680341 Os_TE_680338 Chr11 16873479 16873478 - CLOUD-4 520 0.0017 (5/2920) 0 * * Os_TE_680337 Chr11 16873165 16873166 - TRUNCATOR 2918 0.2440 (700/2869) 0 * * Os_TE_680327 Chr11 16865559 16865558 + ORSgTEMT01701591 154 0.0440 (127/2886) 0 * * Os_TE_680315 Chr11 16859785 16858551 - ORSgTEMT00700002 381 0.2742 (559/2039) 1 Intact Os_TE_680314 Os_TE_680314 Chr11 16858543 16859778 + ORSgTEMT00700017 386 0.2701 (548/2029) 1 Intact Os_TE_680315 Os_TE_680313 Chr11 16858334 16858070 + STOWAWAY17_OS 259 0.2895 (552/1907) 1 Intact Os_TE_680310 Os_TE_680310 Chr11 16858070 16858333 + ORSgTETNOOT00670 249 0.2692 (536/1991) 1 Intact Os_TE_680313 Os_TE_680274 Chr11 16825770 16825771 - SZ-55_LTR 10318 0.0005 (1/1898) 0 * Os_TE_680273 Os_TE_680273 Chr11 16825766 16825765 + SZ-55_LTR 10318 0.0005 (1/1904) 0 * Os_TE_680274 Os_TE_680219 Chr11 16807818 16807817 + SPMLIKE 10989 0.0121 (23/1896) 0 * Os_TE_680218 Os_TE_680218 Chr11 16807813 16807814 - ORSgTETN00200001 10994 0.0131 (25/1903) 0 * Os_TE_680219 Os_TE_680213 Chr11 16805692 16805693 + DS-RICE4N 715 0.0055 (11/2017) 0 * Os_TE_680212 Os_TE_680212 Chr11 16805685 16805684 - DS-RICE2N 613 0.0058 (11/1882) 0 * Os_TE_680213 Os_TE_680206 Chr11 16801419 16801420 - SPMLIKE 10989 0.0005 (1/1893) 0 * * Os_TE_680194 Chr11 16796227 16796228 + COPIA2-LTR_OS 6433 0.0032 (6/1897) 0 * Os_TE_680193 Os_TE_680193 Chr11 16796223 16796222 - COPIA2-LTR_OS 6433 0.0032 (6/1896) 0 * Os_TE_680194 Os_TE_680190 Chr11 16793899 16793898 - ORSgTEMT01601696 238 0.0047 (9/1903) 0 * * Os_TE_680171 Chr11 16782630 16782631 + ORSiTERTOOT00296 5553 0.0005 (1/1902) 0 * Os_TE_680170 Os_TE_680170 Chr11 16782626 16782625 - SC-3_LTR 5748 0.0005 (1/1903) 0 * Os_TE_680171 Os_TE_680169 Chr11 16782495 16782496 - SZ-55_LTR 10318 0.0032 (6/1899) 0 * Os_TE_680168 Os_TE_680168 Chr11 16782491 16782490 + SZ-55_LTR 10318 0.0037 (7/1903) 0 * Os_TE_680169 Os_TE_680167 Chr11 16781667 16781666 + STOWAWAY43_OS 233 0.0005 (1/1885) 0 * Os_TE_680166 Os_TE_680166 Chr11 16781664 16781665 - STOWAWAY43_OS 233 0.0042 (8/1887) 0 * Os_TE_680167 Os_TE_680165 Chr11 16780993 16780994 + SEVERIN-2 1952 0.4844 (898/1854) 0 * * Os_TE_680161 Chr11 16778410 16778411 - SC-8_LTR 4951 0.0003 (1/2989) 0 * Os_TE_680160 Os_TE_680160 Chr11 16778406 16778405 + ORSiTERTOOT00381 4988 0.0003 (1/2987) 0 * Os_TE_680161 Os_TE_680157 Chr11 16774868 16774869 + TWIFBIG 3567 0.0013 (3/2250) 0 * * Os_TE_680143 Chr11 16772579 16772580 + ORSgTEMT00901844 250 0.0004 (1/2857) 0 * * Os_TE_680142 Chr11 16772388 16772387 - ORSgTEMT01700299 212 0.0421 (126/2993) 0 * * Os_TE_680117 Chr11 16761037 16761038 + SINE9_OS 293 0.0014 (4/2893) 0 * Os_TE_680116 Os_TE_680116 Chr11 16761023 16761022 - SINE9_OS 293 0.0024 (7/2959) 0 * Os_TE_680117 Os_TE_680115 Chr11 16761014 16761013 - GYPSO_LTR 9828 0.0024 (7/2959) 0 * * Os_TE_680113 Chr11 16759116 16759117 - SC-3_LTR 5748 0.0013 (4/2994) 0 * Os_TE_680112 Os_TE_680112 Chr11 16759112 16759111 + ORSiTERTOOT00296 5553 0.0013 (4/2994) 0 * Os_TE_680113 Os_TE_680110 Chr11 16757970 16757971 - SC-3_LTR 5748 0.0003 (1/2989) 0 * Os_TE_680109 Os_TE_680109 Chr11 16757966 16757965 + ORSiTERTOOT00296 5553 0.0003 (1/2994) 0 * Os_TE_680110 Os_TE_680107 Chr11 16757200 16757201 - SC-8_LTR 4951 0.0073 (8/1093) 0 * Os_TE_680106 Os_TE_680106 Chr11 16757196 16757195 + SC-8_LTR 4951 0.0030 (9/2975) 0 * Os_TE_680107 Os_TE_680083 Chr11 16743767 16743766 - ORSgTEMT01600152 226 0.0011 (1/939) 0 * Os_TE_680082 Os_TE_680082 Chr11 16743764 16743765 - ORSgTEMT01601696 238 0.0011 (1/943) 0 * Os_TE_680083 Os_TE_680073 Chr11 16740639 16740638 - ENSPM4_OS 11610 0.1633 (487/2983) 0 * * Os_TE_680071 Chr11 16740622 16740623 + SZ-9LTR 965 0.0528 (134/2537) 0 * Os_TE_680070 Os_TE_680070 Chr11 16740618 16740617 - SZ-9LTR 965 0.0506 (128/2529) 0 * Os_TE_680071 Os_TE_680053 Chr11 16737535 16737534 - ORSgTEMT01602413 239 0.1566 (461/2944) 0 * * Os_TE_680052 Chr11 16737379 16737380 - MuDR3_OS 8604 0.0007 (2/2995) 0 * Os_TE_680051 Os_TE_680051 Chr11 16737370 16737369 - MuDR3_OS 8604 0.0007 (2/2993) 0 * Os_TE_680052 Os_TE_679990 Chr11 16710985 16710986 - NDNA1TNA_OS 334 0.0010 (3/2995) 0 * Os_TE_679989 Os_TE_679989 Chr11 16710983 16710982 + NDNA1TNA_OS 334 0.0007 (2/2997) 0 * Os_TE_679990 Os_TE_679988 Chr11 16710754 16710753 - ORSiTERTOOT00327 5186 0.0023 (7/2995) 0 * * Os_TE_679987 Chr11 16710482 16710481 + ORSgTEMT01601122 212 0.0023 (7/2979) 0 * Os_TE_679986 Os_TE_679986 Chr11 16710479 16710480 + ORSgTEMT01601122 212 0.0023 (7/2981) 0 * Os_TE_679987 Os_TE_679977 Chr11 16706756 16706757 + TRUNCATOR2_LTR 2904 0.1700 (496/2918) 0 * Os_TE_679976 Os_TE_679976 Chr11 16706752 16706751 - TRUNCATOR2_LTR 2904 0.1856 (548/2952) 0 * Os_TE_679977 Os_TE_679929 Chr11 16685192 16685191 - TRUNCATOR 2918 0.0004 (1/2768) 0 * Os_TE_679928 Os_TE_679928 Chr11 16685191 16685192 + TRUNCATOR 2918 0.0007 (2/2794) 0 * Os_TE_679929 Os_TE_679866 Chr11 16668684 16668685 + ORSgTEMT00700002 381 0.0031 (9/2871) 0 * * Os_TE_679855 Chr11 16668144 16668145 - STOWAWAY51_OS 246 0.0003 (1/2958) 0 * * Os_TE_679810 Chr11 16659885 16659886 + SZ-62LTR 3649 0.0003 (1/2980) 0 * * Os_TE_679796 Chr11 16652133 16652132 - OSTE33 1012 0.0010 (3/2990) 0 * * Os_TE_679785 Chr11 16647632 16647633 + RETROSAT2LTRA 3112 0.0020 (6/2966) 0 * * Os_TE_679774 Chr11 16645162 16645161 + TRUNCATOR 2918 0.0024 (7/2947) 0 * Os_TE_679773 Os_TE_679773 Chr11 16645159 16645160 - TRUNCATOR 2918 0.0024 (7/2930) 0 * Os_TE_679774 Os_TE_679771 Chr11 16644709 16644710 - GYPSIA_LTR 20595 0.0007 (2/2945) 0 * * Os_TE_679747 Chr11 16631177 16624277 - RIREX_LTR 8828 0.1437 (423/2944) 1 Intact Os_TE_679742 Os_TE_679742 Chr11 16624277 16631177 + RIREX_LTR 8828 0.1434 (422/2942) 1 Intact Os_TE_679747 Os_TE_679730 Chr11 16621508 16610591 - ORSgTERT00201216 11284 0.1419 (424/2989) 1 Intact Os_TE_679718 Os_TE_679718 Chr11 16610591 16621508 - RIRE2_LTR 11306 0.1411 (422/2991) 1 Intact Os_TE_679730 Os_TE_679717 Chr11 16610479 16610480 - ORSgTETN00200001 10994 0.0582 (174/2991) 0 * * Os_TE_679710 Chr11 16608134 16608135 - SEVERIN-2 1952 0.0007 (2/2985) 0 * * Os_TE_679697 Chr11 16605774 16605773 - ORSgTETN00200001 10994 0.0020 (6/2968) 0 * * Os_TE_679696 Chr11 16605531 16605530 - TRUNCATOR 2918 0.0007 (2/2985) 0 * Os_TE_679695 Os_TE_679695 Chr11 16605530 16605531 + TRUNCATOR 2918 0.0007 (2/2983) 0 * Os_TE_679696 Os_TE_679692 Chr11 16604714 16604715 - ORSgTETN00200001 10994 0.1652 (492/2979) 0 * * Os_TE_679687 Chr11 16603429 16603430 - ORSgTETN00200001 10994 0.1782 (522/2930) 0 * Os_TE_679686 Os_TE_679686 Chr11 16603427 16603426 + SPMLIKE 10989 0.1840 (546/2967) 0 * Os_TE_679687 Os_TE_679679 Chr11 16599598 16599597 + ORSgTETNOOT00221 261 0.0043 (13/2990) 0 * Os_TE_679678 Os_TE_679678 Chr11 16599595 16599596 - ORSgTETNOOT00951 263 0.0047 (14/2993) 0 * Os_TE_679679 Os_TE_679677 Chr11 16599384 16599385 - ORSgTERT00201216 11284 0.1716 (513/2989) 0 * * Os_TE_679674 Chr11 16599249 16587945 - ORSgTERT00201216 11284 0.1437 (425/2957) 1 Intact Os_TE_679665 Os_TE_679665 Chr11 16587945 16599249 - RIRE2_LTR 11306 0.1389 (414/2981) 1 Intact Os_TE_679674 Os_TE_679660 Chr11 16586056 16586057 + MUDRN3_OS 903 0.0047 (14/2987) 0 * Os_TE_679659 Os_TE_679659 Chr11 16586048 16586047 + MUDRN3_OS 903 0.0047 (14/2987) 0 * Os_TE_679660 Os_TE_679650 Chr11 16584353 16584352 - SZ-46LTR 3360 0.0027 (7/2627) 0 * * Os_TE_679636 Chr11 16579316 16579317 + ORSiCMCM00100019 2717 0.0008 (2/2559) 0 * Os_TE_679635 Os_TE_679635 Chr11 16579312 16579311 - TRUNCATOR2_LTR 2904 0.0008 (2/2560) 0 * Os_TE_679636 Os_TE_679618 Chr11 16566518 16566519 + EnSpm-10_OS 11265 0.0013 (2/1587) 0 * * Os_TE_679616 Chr11 16565782 16565781 + CACTA-M 1129 0.0139 (22/1581) 0 * * Os_TE_679615 Chr11 16565726 16565725 + ORSgTEMT00700017 386 0.0038 (6/1560) 0 * * Os_TE_679589 Chr11 16559634 16559974 + ORSgTEMT00101341 314 0.3192 (951/2979) 1 Intact * Os_TE_679549 Chr11 16527109 16527110 + SPMLIKE 10989 0.1656 (495/2989) 0 * Os_TE_679548 Os_TE_679548 Chr11 16527107 16527106 - SPMLIKE 10989 0.1688 (505/2992) 0 * Os_TE_679549 Os_TE_679540 Chr11 16523411 16523412 - ORSgTEMT02400179 221 0.0003 (1/2983) 0 * * Os_TE_679535 Chr11 16521540 16521541 - INDITTO 263 0.0138 (40/2901) 0 * Os_TE_679534 Os_TE_679534 Chr11 16521538 16521537 + INDITTO 263 0.0138 (40/2907) 0 * Os_TE_679535 Os_TE_679533 Chr11 16521499 16521500 + RIREX_LTR 8828 0.0003 (1/2954) 0 * Os_TE_679532 Os_TE_679532 Chr11 16521495 16521494 - RIREX_LTR 8828 0.0003 (1/2950) 0 * Os_TE_679533 Os_TE_679520 Chr11 16519056 16516826 + COPIA1-LTR_OS 9292 0.3101 (927/2989) 1 Intact * Os_TE_679507 Chr11 16514884 16514885 + ORSgTEMT01701965 154 0.6998 (2091/2988) 0 * Os_TE_679506 Os_TE_679506 Chr11 16514879 16514878 + STOWAWAY1_OS 149 0.6996 (2087/2983) 0 * Os_TE_679507 Os_TE_679501 Chr11 16513133 16513132 + ORSgTEMT01700715 134 0.6916 (1994/2883) 0 * * Os_TE_679500 Chr11 16509884 16509883 - ORSgTETN00200001 10994 0.0008 (2/2469) 0 * * Os_TE_679491 Chr11 16507488 16507487 - TRUNCATOR 2918 0.3166 (944/2982) 0 * * Os_TE_679461 Chr11 16496303 16499260 + TRUNCATOR 2918 0.4464 (936/2097) 1 Intact * Os_TE_679455 Chr11 16495700 16495701 - TRUNCATOR2_LTR 2904 0.0005 (1/2096) 0 * * Os_TE_679436 Chr11 16491737 16491736 - ORSgTEMT00900099 250 0.5251 (681/1297) 0 * * Os_TE_679434 Chr11 16491631 16491632 + MDM2 312 0.0584 (171/2928) 0 * * Os_TE_679432 Chr11 16491611 16491610 - ORSgTERT00201216 11284 0.0039 (11/2847) 0 * * Os_TE_679374 Chr11 16466992 16466991 + CLOUD-4 520 0.0485 (144/2970) 0 * * Os_TE_679359 Chr11 16465431 16465432 + OSTE33 1012 0.0020 (6/2982) 0 * Os_TE_679358 Os_TE_679358 Chr11 16465422 16465421 - OSTE33 1012 0.0024 (7/2977) 0 * Os_TE_679359 Os_TE_679341 Chr11 16463227 16463228 + TRUNCATOR 2918 0.0008 (2/2467) 0 * * Os_TE_679340 Chr11 16463094 16463093 + TRUNCATOR 2918 0.0343 (97/2832) 0 * Os_TE_679339 Os_TE_679339 Chr11 16463093 16463094 - TRUNCATOR 2918 0.0248 (70/2826) 0 * Os_TE_679340 Os_TE_679313 Chr11 16453695 16453696 + JOUZHENA 607 0.0020 (6/2988) 0 * Os_TE_679312 Os_TE_679312 Chr11 16453688 16453687 - JOUZHENA 607 0.0020 (6/2988) 0 * Os_TE_679313 Os_TE_679289 Chr11 16447298 16447297 - SEVERIN-2 1952 0.0323 (94/2910) 0 * Os_TE_679288 Os_TE_679288 Chr11 16447296 16447297 + SEVERIN-2 1952 0.0302 (87/2884) 0 * Os_TE_679289 Os_TE_679264 Chr11 16438273 16438038 - ORSgTEMT01602143 236 0.1594 (433/2716) 0.94 Intact * Os_TE_679246 Chr11 16431650 16431649 + SPMLIKE 10989 0.0025 (7/2853) 0 * * Os_TE_679242 Chr11 16430246 16430245 + COPIA1-LTR_OS 9292 0.0022 (6/2746) 0 * * Os_TE_679231 Chr11 16426486 16426487 - TRUNCATOR2_LTR 2904 0.0138 (7/509) 0 * * Os_TE_679219 Chr11 16420703 16420702 - SZ-20LTR 1395 0.0010 (3/2949) 0 * * Os_TE_679206 Chr11 16418153 16418152 - TRUNCATOR 2918 0.0037 (7/1890) -1 * * Os_TE_679193 Chr11 16415306 16415307 + RIREX_LTR 8828 0.0045 (13/2870) 0 * Os_TE_679192 Os_TE_679192 Chr11 16415302 16415301 - RIREX_LTR 8828 0.0045 (13/2866) 0 * Os_TE_679193 Os_TE_679187 Chr11 16413452 16413451 - ORSgTETN00200001 10994 0.1512 (429/2838) 0 * * Os_TE_679180 Chr11 16409635 16410226 - DS-RICE2N 613 0.1736 (500/2880) 1 Intact * Os_TE_679176 Chr11 16408815 16408816 - TRUNCATOR2_LTR 2904 0.0045 (13/2862) 0 * * Os_TE_679174 Chr11 16408566 16408567 + CASTAWAY 364 0.8305 (2347/2826) 0 * Os_TE_679173 Os_TE_679173 Chr11 16408564 16408563 - CASTAWAY 364 0.8226 (2244/2728) 0 * Os_TE_679174 Os_TE_679165 Chr11 16402256 16402255 + SPMLIKE 10989 0.0007 (2/2835) 0 * * Os_TE_679164 Chr11 16402073 16401106 - CACTA-H 1152 0.1829 (500/2734) 1 Intact * Os_TE_679146 Chr11 16396886 16396885 + STOWAWAY50_OS 174 0.8333 (2399/2879) 0 * Os_TE_679145 Os_TE_679145 Chr11 16396883 16396884 - STOWAWAY50_OS 174 0.8328 (2385/2864) 0 * Os_TE_679146 Os_TE_679129 Chr11 16392227 16392069 + SNAP-OL3 189 0.1996 (509/2550) 1 Intact Os_TE_679128 Os_TE_679128 Chr11 16392068 16392225 - SNAP-OL3 189 0.1921 (512/2665) 1 Intact Os_TE_679129 Os_TE_679127 Chr11 16390823 16390824 - SZ-9LTR 965 0.0070 (21/2979) 0 * Os_TE_679126 Os_TE_679126 Chr11 16390819 16390818 + SZ-9LTR 965 0.0325 (21/647) 0 * Os_TE_679127 Os_TE_679125 Chr11 16390792 16390791 + DS-RICE4N 715 0.0345 (103/2985) 0 * * Os_TE_679120 Chr11 16387925 16387924 + ORSgTEMT01700715 134 0.1953 (124/635) 0 * Os_TE_679119 Os_TE_679119 Chr11 16387924 16387925 + ORSgTEMT01700505 154 0.1876 (118/629) 0 * Os_TE_679120 Os_TE_679113 Chr11 16385700 16385701 + TRUNCATOR2_LTR 2904 0.0106 (7/658) 0 * Os_TE_679112 Os_TE_679112 Chr11 16385696 16385695 - TRUNCATOR2_LTR 2904 0.0123 (8/649) 0 * Os_TE_679113 Os_TE_679106 Chr11 16381998 16381999 - STOWAWAY11_OS 292 0.0227 (14/617) 0 * Os_TE_679105 Os_TE_679105 Chr11 16381997 16381996 + STOWAWAY11_OS 292 0.0191 (12/627) 0 * Os_TE_679106 Os_TE_679079 Chr11 16367900 16367901 - RIREX_LTR 8828 0.0020 (1/504) 0 * Os_TE_679078 Os_TE_679078 Chr11 16367896 16367895 + RIREX_LTR 8828 0.0019 (1/525) 0 * Os_TE_679079 Os_TE_679074 Chr11 16363039 16363040 - SINE9_OS 293 0.0075 (21/2802) 0 * * Os_TE_679071 Chr11 16362700 16362701 - ORSgTEMT01601955 198 0.7863 (1843/2344) 0 * * Os_TE_679069 Chr11 16361152 16361151 + Mudr5_OS 5952 0.8282 (2352/2840) 0 * * Os_TE_679067 Chr11 16359235 16359236 + OSTONOR1_LTR 6440 0.0139 (7/504) 0 * Os_TE_679066 Os_TE_679066 Chr11 16359231 16359230 - OSTONOR1_LTR 6440 0.0139 (7/504) 0 * Os_TE_679067 Os_TE_679065 Chr11 16357867 16357866 - OSTE28 298 0.0187 (20/1069) 0 * * Os_TE_679064 Chr11 16355937 16355938 + CACTA-J 1159 0.8219 (2289/2785) 0 * * Os_TE_679062 Chr11 16355518 16355519 + MPING 430 0.0003 (1/2929) 0 * * Os_TE_679060 Chr11 16355197 16355198 + TELIA 141 0.0014 (4/2889) 0 * Os_TE_679059 Os_TE_679059 Chr11 16355189 16355188 + TELIA 141 0.0014 (4/2887) 0 * Os_TE_679060 Os_TE_679057 Chr11 16354201 16354200 + CLOUD-7 495 0.1627 (469/2883) 0 * * Os_TE_679055 Chr11 16353359 16353360 + SEVERIN-2 1952 0.1529 (454/2970) 0 * * Os_TE_679047 Chr11 16352067 16343197 - GYPSY1-LTR_OS 8900 0.2242 (663/2957) 1 Intact Os_TE_679024 Os_TE_679024 Chr11 16343197 16352067 + GYPSY1-LTR_OS 8900 0.2182 (650/2979) 1 Intact Os_TE_679047 Os_TE_679023 Chr11 16343033 16343032 + RIRE1_LTR 8322 0.7988 (2370/2967) 0 * * Os_TE_679022 Chr11 16342815 16342814 - Cassandra_OS-LTR 764 0.0030 (2/674) 0 * * Os_TE_678999 Chr11 16333424 16333423 + TRUNCATOR 2918 0.0087 (26/2988) 0 * * Os_TE_678994 Chr11 16330962 16330963 + RIREX_LTR 8828 0.0171 (51/2980) 0 * Os_TE_678993 Os_TE_678993 Chr11 16330958 16330957 - RIREX_LTR 8828 0.0164 (49/2979) 0 * Os_TE_678994 Os_TE_678963 Chr11 16323181 16323180 - SC-8_LTR 4951 0.0003 (1/2991) 0 * * Os_TE_678961 Chr11 16318255 16317987 - ORSgTEMT06100010 269 0.2097 (628/2995) 1 Intact Os_TE_678959 Os_TE_678959 Chr11 16317987 16318255 + ORSgTEMT06100010 269 0.2113 (632/2991) 1 Intact Os_TE_678961 Os_TE_678945 Chr11 16305558 16305559 - OSTE24 683 0.0106 (23/2162) 0 * * Os_TE_678938 Chr11 16304051 16304052 - INDITTO 263 0.0400 (119/2977) 0 * Os_TE_678937 Os_TE_678937 Chr11 16304049 16304048 - ORSgTETNOOT02000 263 0.0417 (124/2971) 0 * Os_TE_678938 Os_TE_678936 Chr11 16303938 16303937 - ORSgTEMT00900099 250 0.0404 (120/2967) 0 * * Os_TE_678934 Chr11 16303751 16303752 + ORSiTERTOOT00250 3262 0.5643 (1237/2192) 0 * * Os_TE_678933 Chr11 16303209 16303210 + SINE03_OS 360 0.0348 (95/2731) 0 * * Os_TE_678906 Chr11 16298386 16298387 + NDNA1TNA_OS 334 0.0003 (1/2904) 0 * Os_TE_678905 Os_TE_678905 Chr11 16298384 16298383 - NDNA1TNA_OS 334 0.0004 (1/2851) 0 * Os_TE_678906 Os_TE_678904 Chr11 16298355 16298354 - MERMITE18B 1306 0.0113 (33/2910) 0 * * Os_TE_678902 Chr11 16298097 16298098 - COPI2_LTR 4733 0.0003 (1/2970) 0 * * Os_TE_678891 Chr11 16295900 16295901 - SZ-22_LTR 4403 0.0043 (13/2992) 0 * Os_TE_678890 Os_TE_678890 Chr11 16295896 16295895 + ORSiTERTOOT00226 792 0.0043 (13/2995) 0 * Os_TE_678891 Os_TE_678889 Chr11 16295339 16295340 + RIRE3A_LTR 10580 0.0003 (1/2997) 0 * * Os_TE_678878 Chr11 16293432 16293431 + ORSgTEMT00901862 245 0.0382 (110/2878) 0 * * Os_TE_678874 Chr11 16291447 16291446 - MPING 430 0.0003 (1/2996) 0 * * Os_TE_678872 Chr11 16291289 16291288 + MPING 430 0.0015 (1/671) 0 * * Os_TE_678869 Chr11 16289974 16289975 + ORSgTEMT01601122 212 0.0007 (2/2990) 0 * * Os_TE_678867 Chr11 16287921 16287922 - TYPEM 227 0.1103 (329/2982) 0 * Os_TE_678866 Os_TE_678866 Chr11 16287920 16287919 - ORSgTEMT02400179 221 0.1110 (330/2974) 0 * Os_TE_678867 Os_TE_678863 Chr11 16286873 16286874 - SC-8_LTR 4951 0.0014 (4/2893) 0 * Os_TE_678862 Os_TE_678862 Chr11 16286869 16286868 + SC-8_LTR 4951 0.0010 (3/2879) 0 * Os_TE_678863 Os_TE_678857 Chr11 16284639 16284640 + COPI2_LTR 4733 0.0007 (2/2982) 0 * Os_TE_678856 Os_TE_678856 Chr11 16284635 16284634 - COPI2_LTR 4733 0.0007 (2/2986) 0 * Os_TE_678857 Os_TE_678852 Chr11 16282742 16282741 - ORSgTETNOOT01534 208 0.0381 (114/2989) 0 * Os_TE_678851 Os_TE_678851 Chr11 16282735 16282736 - ORSgTETNOOT01534 208 0.0395 (118/2985) 0 * Os_TE_678852 Os_TE_678793 Chr11 16260691 16260690 + COPIA2-LTR_OS 6433 0.0003 (1/2946) 0 * * Os_TE_678775 Chr11 16247997 16247996 + TWIF 586 0.0188 (55/2933) 0 * * Os_TE_678761 Chr11 16242193 16242192 + RIRE3A_LTR 10580 0.0007 (2/2960) 0 * * Os_TE_678735 Chr11 16226493 16226492 + RIREX_LTR 8828 0.2614 (782/2992) 0 * * Os_TE_678732 Chr11 16225978 16225979 - TELIA 141 0.0007 (2/2900) 0 * Os_TE_678731 Os_TE_678731 Chr11 16225970 16225969 + TELIA 141 0.0007 (2/2917) 0 * Os_TE_678732 Os_TE_678625 Chr11 16196861 16196860 + ORSiTERTOOT00296 5553 0.0003 (1/2985) 0 * * Os_TE_678602 Chr11 16191019 16191018 + ORSiCMCM00100016 1387 0.0007 (2/2989) 0 * * Os_TE_678584 Chr11 16183858 16174277 + ENSPM6_OS 9815 0.2981 (859/2882) 1 Intact Os_TE_678582 Os_TE_678582 Chr11 16174277 16183858 - ENSPM6_OS 9815 0.3181 (945/2971) 1 Intact Os_TE_678584 Os_TE_678581 Chr11 16174125 16174124 - TYPEM 227 0.0010 (3/2991) 0 * * Os_TE_678579 Chr11 16173534 16173533 + MPING 430 0.0003 (1/2990) 0 * * Os_TE_678567 Chr11 16171834 16171835 + ORSgTEMT04800085 366 0.0003 (1/2942) 0 * * Os_TE_678556 Chr11 16168765 16168766 - COPIA2-LTR_OS 6433 0.0003 (1/2938) 0 * * Os_TE_678552 Chr11 16168429 16168428 - COPIA2-LTR_OS 6433 0.0003 (1/2973) 0 * * Os_TE_678541 Chr11 16162819 16162818 - RIRE3_LTR 12054 0.0007 (2/2926) 0 * * Os_TE_678470 Chr11 16133725 16133726 + SEVERIN-2 1952 0.2249 (670/2979) 0 * * Os_TE_678468 Chr11 16132354 16132355 + SPMLIKE 10989 0.1212 (343/2829) 0.12 * Os_TE_678467 Os_TE_678467 Chr11 16132352 16132351 - ORSgTETN00200001 10994 0.1460 (429/2938) 0 * Os_TE_678468 Os_TE_678464 Chr11 16131625 16131626 - SPMLIKE 10989 0.0007 (2/2931) 0 * * Os_TE_678462 Chr11 16130128 16130129 - RIREX_LTR 8828 0.0023 (7/2991) 0 * Os_TE_678461 Os_TE_678461 Chr11 16130124 16130123 + RIREX_LTR 8828 0.0023 (7/2990) 0 * Os_TE_678462 Os_TE_678427 Chr11 16115218 16115217 + TRUNCATOR 2918 0.0153 (44/2878) 0 * * Os_TE_678421 Chr11 16114118 16114117 + RIREX_LTR 8828 0.0007 (2/2983) 0 * * Os_TE_678398 Chr11 16104759 16104760 - RIRE3_LTR 12054 0.0010 (3/2995) 0 * * Os_TE_678375 Chr11 16098393 16098394 - COPIA2-LTR_OS 6433 0.0007 (2/2989) 0 * Os_TE_678374 Os_TE_678374 Chr11 16098389 16098388 + COPIA2-LTR_OS 6433 0.0007 (2/2986) 0 * Os_TE_678375 Os_TE_678373 Chr11 16098358 16098359 - COPI2_LTR 4733 0.0003 (1/2986) 0 * Os_TE_678372 Os_TE_678372 Chr11 16098354 16098353 + COPI2_LTR 4733 0.0003 (1/2986) 0 * Os_TE_678373 Os_TE_678369 Chr11 16096129 16096130 - RIRE3_LTR 12054 0.0013 (4/2998) 0 * Os_TE_678368 Os_TE_678368 Chr11 16096125 16096124 + RIRE3_LTR 12054 0.0013 (4/2997) 0 * Os_TE_678369 Os_TE_678346 Chr11 16088535 16088536 - ORSgTETN00200001 10994 0.0144 (43/2989) 0 * * Os_TE_678319 Chr11 16074061 16074062 + RETROSAT2LTR 12796 0.0030 (9/2995) 0 * Os_TE_678318 Os_TE_678318 Chr11 16074059 16074058 - RETROSAT2LTR 12796 0.0030 (9/2991) 0 * Os_TE_678319 Os_TE_678317 Chr11 16072744 16072745 + COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_678316 Os_TE_678316 Chr11 16072740 16072739 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_678317 Os_TE_678315 Chr11 16070206 16070207 - RIREX_LTR 8828 0.0023 (7/2989) 0 * Os_TE_678314 Os_TE_678314 Chr11 16070202 16070201 + RIREX_LTR 8828 0.0023 (7/2989) 0 * Os_TE_678315 Os_TE_678313 Chr11 16069763 16069764 + RIREX_LTR 8828 0.0024 (7/2931) 0 * Os_TE_678312 Os_TE_678312 Chr11 16069759 16069758 - RIREX_LTR 8828 0.0023 (7/2989) 0 * Os_TE_678313 Os_TE_678138 Chr11 16009112 16009111 - TRUNCATOR 2918 0.4360 (1223/2805) 0 * * Os_TE_678111 Chr11 15997775 15997776 + TRUNCATOR 2918 0.4079 (1200/2942) 0 * * Os_TE_678105 Chr11 15996296 15996295 + TRUNCATOR2_LTR 2904 0.2190 (637/2909) 0 * * Os_TE_678042 Chr11 15964187 15964188 + STOWAWAY9_OS 235 0.0028 (3/1073) 0 * * Os_TE_678022 Chr11 15956633 15956634 - RIRE2_LTR 11306 0.0071 (7/983) 0 * Os_TE_678021 Os_TE_678021 Chr11 15956629 15956628 - ORSgTERT00201216 11284 0.0071 (7/986) 0 * Os_TE_678022 Os_TE_677945 Chr11 15919230 15925658 + COPIA2-LTR_OS 6433 0.3259 (952/2921) 1 Intact * Os_TE_677927 Chr11 15909025 15909024 - ORSgTEMT00501204 149 0.0184 (55/2991) 0 * * Os_TE_677911 Chr11 15906721 15906720 - OSTE24 683 0.0009 (2/2114) 0 * * Os_TE_677822 Chr11 15861988 15861987 + ORSgTEMT01601591 242 0.0010 (3/2906) 0 * Os_TE_677821 Os_TE_677821 Chr11 15861982 15861983 + STOWAWAY51_OS 246 0.0010 (3/2892) 0 * Os_TE_677822 Os_TE_677812 Chr11 15860700 15860701 - ENSPM4_OS 11610 0.1780 (530/2977) 0 * * Os_TE_677810 Chr11 15860336 15860335 - COPI2_LTR 4733 0.0047 (14/2953) 0 * * Os_TE_677809 Chr11 15860196 15860195 + SPMLIKE 10989 0.0003 (1/2968) 0 * * Os_TE_677808 Chr11 15859941 15859942 - RIREX_LTR 8828 0.0014 (4/2826) 0 * Os_TE_677807 Os_TE_677807 Chr11 15859937 15859936 + RIREX_LTR 8828 0.0014 (4/2817) 0 * Os_TE_677808 Os_TE_677801 Chr11 15857197 15857198 - TRUNCATOR2_LTR 2904 0.2409 (720/2989) 0 * Os_TE_677800 Os_TE_677800 Chr11 15857191 15857190 + TRUNCATOR2_LTR 2904 0.2218 (653/2944) 0 * Os_TE_677801 Os_TE_677784 Chr11 15849612 15849613 + MUDRN1_OS 764 0.0007 (2/2975) 0 * Os_TE_677783 Os_TE_677783 Chr11 15849604 15849603 - MUDRN1_OS 764 0.0007 (2/2974) 0 * Os_TE_677784 Os_TE_677777 Chr11 15848154 15848155 - RIRE5-LTR_OS 6427 0.0007 (2/2846) 0 * * Os_TE_677763 Chr11 15839133 15839134 + RIRE3_LTR 12054 0.0004 (1/2792) 0 * * Os_TE_677761 Chr11 15839115 15839116 + RIRE2_LTR 11306 0.2356 (701/2976) 0 * Os_TE_677760 Os_TE_677760 Chr11 15839111 15839110 - RIRE2_LTR 11306 0.2304 (689/2991) 0 * Os_TE_677761 Os_TE_677758 Chr11 15839035 15838932 + DEBOAT 110 0.7561 (2251/2977) 1 Intact * Os_TE_677755 Chr11 15838842 15838843 - RETRO1_LTR 8314 0.0024 (7/2970) 0 * Os_TE_677754 Os_TE_677754 Chr11 15838838 15838837 + RETRO1_LTR 8314 0.0020 (6/2983) 0 * Os_TE_677755 Os_TE_677753 Chr11 15838415 15838414 - CACTA-H 1152 0.2586 (767/2966) 0 * * Os_TE_677752 Chr11 15838193 15837636 + XIKE 594 0.7643 (2205/2885) 1 Intact * Os_TE_677750 Chr11 15837378 15837136 + DITTO-2 235 0.8128 (2266/2788) 1 Intact * Os_TE_677742 Chr11 15836300 15836301 - ORSiTERTOOT00274 4749 0.7569 (763/1008) -1 * * Os_TE_677739 Chr11 15835409 15835408 + TRUNCATOR 2918 0.0173 (50/2897) 0 * * Os_TE_677738 Chr11 15835408 15835409 - TRUNCATOR 2918 0.0029 (7/2398) 0 * * Os_TE_677737 Chr11 15835391 15819681 + CACTA-B 1103 0.7519 (2173/2890) 1 Intact * Os_TE_677706 Chr11 15819681 15835389 - ORSgTETN00200001 10994 0.7344 (2079/2831) 1 Intact * Os_TE_677698 Chr11 15815649 15815648 + ORSiTERTOOT00028 8600 0.0024 (7/2958) 0 * * Os_TE_677685 Chr11 15809166 15809165 - TRUNCATOR 2918 0.0179 (41/2290) 0 * Os_TE_677684 Os_TE_677684 Chr11 15809165 15809166 + TRUNCATOR 2918 0.0175 (40/2280) 0 * Os_TE_677685 Os_TE_677677 Chr11 15807656 15807657 - ORSgTERT00201216 11284 0.0007 (2/2959) 0 * Os_TE_677676 Os_TE_677676 Chr11 15807652 15807651 - RIRE2_LTR 11306 0.0007 (2/2972) 0 * Os_TE_677677 Os_TE_677667 Chr11 15805153 15805154 + ORSgTEMT01701101 133 0.0151 (44/2911) 0 * * Os_TE_677666 Chr11 15804458 15804459 - AMYLTP 383 0.0023 (7/2990) 0 * Os_TE_677665 Os_TE_677665 Chr11 15804450 15804449 + AMYLTP 383 0.0020 (6/2977) 0 * Os_TE_677666 Os_TE_677641 Chr11 15782147 15782146 + TNR2A 152 0.0148 (44/2981) 0 * * Os_TE_677603 Chr11 15763085 15763084 - STOWAWAY51_OS 246 0.0044 (13/2981) 0 * Os_TE_677602 Os_TE_677602 Chr11 15763079 15763080 + STOWAWAY51_OS 246 0.0044 (13/2982) 0 * Os_TE_677603 Os_TE_677600 Chr11 15763027 15763026 + RIRE2_LTR 11306 0.0007 (2/2980) 0 * * Os_TE_677597 Chr11 15761471 15761472 - SZ-22_LTR 4403 0.0003 (1/2948) 0 * * Os_TE_677593 Chr11 15760930 15760931 - STOWAWAY51_OS 246 0.0003 (1/2965) 0 * * Os_TE_677565 Chr11 15751627 15751628 - RIREX_LTR 8828 0.0003 (1/2965) 0 * * Os_TE_677535 Chr11 15739012 15739013 - RIREX_LTR 8828 0.2200 (641/2913) 0 * Os_TE_677534 Os_TE_677534 Chr11 15739010 15739009 + RIREX_LTR 8828 0.2348 (693/2952) 0 * Os_TE_677535 Os_TE_677518 Chr11 15726959 15726960 + SZ-62LTR 3649 0.0185 (55/2975) 0 * * Os_TE_677507 Chr11 15720007 15720006 - INDITTO 263 0.0623 (184/2952) 0 * * Os_TE_677495 Chr11 15711394 15711395 - SZ-22_LTR 4403 0.0006 (1/1707) 0 * Os_TE_677494 Os_TE_677494 Chr11 15711390 15711389 + ORSiTERTOOT00226 792 0.0003 (1/2940) 0 * Os_TE_677495 Os_TE_677492 Chr11 15711382 15711381 - RETROSAT3_LTR 11537 0.4449 (1303/2929) 0 * * Os_TE_677482 Chr11 15706678 15706679 - SPMLIKE 10989 0.0020 (6/2975) 0 * Os_TE_677481 Os_TE_677481 Chr11 15706676 15706675 + SPMLIKE 10989 0.0030 (9/2976) 0 * Os_TE_677482 Os_TE_677416 Chr11 15681918 15681917 + ORSiCMCM00100019 2717 0.0073 (7/961) 0 * * Os_TE_677405 Chr11 15675850 15675851 - STOWAWAY1_OS 149 0.0004 (1/2277) 0 * * Os_TE_677392 Chr11 15669811 15669721 + DEBOAT 110 0.8843 (2193/2480) 1 Intact * Os_TE_677386 Chr11 15664947 15664946 - COPI2_LTR 4733 0.0809 (185/2288) 0 * * Os_TE_677385 Chr11 15664824 15664823 + COPI2_LTR 4733 0.0019 (5/2663) 0 * * Os_TE_677330 Chr11 15640355 15640354 + TRUNCATOR2_LTR 2904 0.0139 (41/2960) 0 * * Os_TE_677297 Chr11 15626171 15626172 - RIRE3_LTR 12054 0.0009 (2/2115) 0 * * Os_TE_677250 Chr11 15614590 15614591 - TRUNCATOR 2918 0.2474 (736/2975) 0 * * Os_TE_677243 Chr11 15611596 15611597 - ORSgTETN00200001 10994 0.0021 (6/2800) 0 * Os_TE_677242 Os_TE_677242 Chr11 15611594 15611593 + SPMLIKE 10989 0.0025 (7/2798) 0 * Os_TE_677243 Os_TE_677203 Chr11 15597515 15597516 - COPIA3-LTR_OS 5061 0.0549 (164/2988) 0 * Os_TE_677202 Os_TE_677202 Chr11 15597511 15597510 + COPIA3-LTR_OS 5061 0.0543 (162/2984) 0 * Os_TE_677203 Os_TE_677107 Chr11 15565469 15576165 + ORSiTERT00200145 12238 0.3142 (936/2979) 1 Intact * Os_TE_677095 Chr11 15562062 15562063 + GYPSY-A_LTR 8951 0.0003 (1/2995) 0 * * Os_TE_677069 Chr11 15553384 15553385 - COPI2_LTR 4733 0.0003 (1/2981) 0 * * Os_TE_677037 Chr11 15545141 15545142 - ORSgTEMT00501568 147 0.0003 (1/2947) 0 * * Os_TE_676990 Chr11 15538390 15538391 - F770 284 0.0003 (1/2997) 0 * * Os_TE_676968 Chr11 15528278 15528279 + SZ-40LTR 2465 0.0126 (9/713) 0 * * Os_TE_676917 Chr11 15504880 15504879 + ORSgTETNOOT01998 254 0.3823 (1078/2820) 0 * * Os_TE_676866 Chr11 15491818 15491819 + RETRO1_LTR 8314 0.0003 (1/2936) 0 * Os_TE_676865 Os_TE_676865 Chr11 15491814 15491813 - RETRO2A_LTR 12895 0.0003 (1/2933) 0 * Os_TE_676866 Os_TE_676774 Chr11 15452172 15452171 + MUDRN5_OS 374 0.0003 (1/2977) 0 * * Os_TE_676762 Chr11 15450355 15450354 - ORSgTEMT00500520 147 0.0007 (2/2956) 0 * * Os_TE_676761 Chr11 15450259 15450258 - ORSgTEMT02500013 183 0.0007 (2/2890) 0 * * Os_TE_676759 Chr11 15446630 15446631 - ORSgTETNOOT01760 137 0.0007 (2/2964) 0 * * Os_TE_676743 Chr11 15441443 15441444 + COPIA2-LTR_OS 6433 0.0223 (66/2966) 0 * Os_TE_676742 Os_TE_676742 Chr11 15441439 15441438 - COPIA2-LTR_OS 6433 0.0233 (69/2966) 0 * Os_TE_676743 Os_TE_676731 Chr11 15435614 15435613 + RIREX_LTR 8828 0.0003 (1/2968) 0 * * Os_TE_676727 Chr11 15434589 15434590 - CLOUD 734 0.0229 (68/2972) 0 * Os_TE_676726 Os_TE_676726 Chr11 15434580 15434579 - CLOUD 734 0.0212 (63/2967) 0 * Os_TE_676727 Os_TE_676718 Chr11 15431836 15431837 + TRUNCATOR 2918 0.1388 (387/2789) 0 * * Os_TE_676708 Chr11 15428876 15428877 - ORSgTEMT01700410 135 0.0007 (2/2986) 0 * Os_TE_676707 Os_TE_676707 Chr11 15428874 15428873 - ORSgTEMT01700507 154 0.0007 (2/2983) 0 * Os_TE_676708 Os_TE_676696 Chr11 15427278 15427279 - MuDR4_OS 7610 0.0318 (93/2923) 0 * Os_TE_676695 Os_TE_676695 Chr11 15427271 15427270 - MuDR4_OS 7610 0.0321 (94/2928) 0 * Os_TE_676696 Os_TE_676687 Chr11 15425591 15425592 - ORSiTERT00100062 5674 0.0003 (1/2997) 0 * Os_TE_676686 Os_TE_676686 Chr11 15425587 15425586 + OSTONOR1_LTR 6440 0.0003 (1/2994) 0 * Os_TE_676687 Os_TE_676649 Chr11 15409384 15409385 + RIREX_LTR 8828 0.0007 (2/2988) 0 * Os_TE_676648 Os_TE_676648 Chr11 15409380 15409379 - RIREX_LTR 8828 0.0003 (1/2989) 0 * Os_TE_676649 Os_TE_676628 Chr11 15393926 15393927 - ORSgTETN00200001 10994 0.0023 (7/2984) 0 * Os_TE_676627 Os_TE_676627 Chr11 15393924 15393923 + SPMLIKE 10989 0.0027 (8/2991) 0 * Os_TE_676628 Os_TE_676614 Chr11 15389680 15389679 - HELITRON4_OS 13190 0.2736 (812/2968) 0 * * Os_TE_676613 Chr11 15389019 15389018 - ORSgTEMT00501447 126 0.0003 (1/2951) 0 * * Os_TE_676593 Chr11 15384387 15384388 - RETRO1_LTR 8314 0.0003 (1/2985) 0 * Os_TE_676592 Os_TE_676592 Chr11 15384383 15384382 + RETRO1_LTR 8314 0.0003 (1/2979) 0 * Os_TE_676593 Os_TE_676556 Chr11 15378208 15378209 + TRUNCATOR 2918 0.0004 (1/2445) 0 * * Os_TE_676532 Chr11 15370276 15370275 + RETRO2_LTR 12874 0.6439 (1790/2780) 0 * * Os_TE_676523 Chr11 15364918 15364917 - MERMITE-18 1263 0.0256 (76/2970) 0 * * Os_TE_676521 Chr11 15363935 15363934 - ORSiTETNOOT00107 906 0.0227 (68/2997) 0 * Os_TE_676520 Os_TE_676520 Chr11 15363931 15363932 + ORSiTETNOOT00107 906 0.0237 (71/2996) 0 * Os_TE_676521 Os_TE_676506 Chr11 15361229 15361228 + ORSgTEMT01601122 212 0.0216 (64/2964) 0 * * Os_TE_676504 Chr11 15360998 15360999 + OLO24 345 0.0003 (1/2979) 0 * * Os_TE_676487 Chr11 15357811 15357812 - COPI2_LTR 4733 0.0003 (1/2983) 0 * * Os_TE_676468 Chr11 15350395 15350396 - RIREX_LTR 8828 0.0222 (66/2979) 0 * * Os_TE_676450 Chr11 15342965 15342966 + COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_676449 Os_TE_676449 Chr11 15342961 15342960 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_676450 Os_TE_676448 Chr11 15342524 15342525 + ORSgTEMT01601122 212 0.0003 (1/2976) 0 * * Os_TE_676440 Chr11 15339315 15339314 + BAJIELTR 4500 0.0024 (7/2911) 0 * * Os_TE_676428 Chr11 15336118 15336119 - DS-RICE4N 715 0.0020 (6/2989) 0 * * Os_TE_676417 Chr11 15329168 15329169 - ORSgTERT00201216 11284 0.0007 (2/2979) 0 * Os_TE_676416 Os_TE_676416 Chr11 15329164 15329163 - RIRE2_LTR 11306 0.0007 (2/2935) 0 * Os_TE_676417 Os_TE_676414 Chr11 15328801 15328800 + COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * * Os_TE_676395 Chr11 15319209 15319210 + ORSiTERTOOT00034 791 0.0010 (3/2866) 0 * Os_TE_676394 Os_TE_676394 Chr11 15319205 15319204 - SZ-22_LTR 4403 0.0010 (3/2925) 0 * Os_TE_676395 Os_TE_676393 Chr11 15319147 15319148 + TRUNCATOR 2918 0.0003 (1/2946) 0 * Os_TE_676392 Os_TE_676392 Chr11 15319141 15319140 - ORSiTERT00200154 9386 0.0003 (1/2958) 0 * Os_TE_676393 Os_TE_676382 Chr11 15316628 15316629 - RETROFIT3_LTR 5391 0.0040 (12/2993) 0 * * Os_TE_676371 Chr11 15314319 15314320 + RIRE3_LTR 12054 0.0134 (40/2983) 0 * Os_TE_676370 Os_TE_676370 Chr11 15314315 15314314 - RIRE3_LTR 12054 0.0130 (39/2996) 0 * Os_TE_676371 Os_TE_676368 Chr11 15313487 15313486 + TRUNCATOR 2918 0.0043 (13/2997) 0 * * Os_TE_676366 Chr11 15313207 15313208 - ENSPM5_OS 9581 0.2558 (759/2967) 0 * Os_TE_676365 Os_TE_676365 Chr11 15313205 15313204 + ENSPM5_OS 9581 0.2540 (753/2964) 0 * Os_TE_676366 Os_TE_676353 Chr11 15306172 15306173 - RETRO2_LTR 12874 0.0513 (152/2964) 0 * * Os_TE_676345 Chr11 15303310 15303311 - COPI2_LTR 4733 0.0003 (1/2986) 0 * * Os_TE_676344 Chr11 15302405 15302406 - ORSgTERT00201216 11284 0.0007 (2/2974) 0 * Os_TE_676343 Os_TE_676343 Chr11 15302401 15302400 - RIRE2_LTR 11306 0.0007 (2/2964) 0 * Os_TE_676344 Os_TE_676336 Chr11 15298379 15298378 + CPSC4B_LTR 5343 0.0037 (11/2998) 0 * * Os_TE_676333 Chr11 15297626 15297625 + TRUNCATOR 2918 0.0010 (3/2994) 0 * * Os_TE_676329 Chr11 15295919 15295920 - DS-RICE4N 715 0.2932 (876/2988) 0 * Os_TE_676328 Os_TE_676328 Chr11 15295912 15295911 + DS-RICE4N 715 0.2854 (850/2978) 0 * Os_TE_676329 Os_TE_676324 Chr11 15295604 15295603 + COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * * Os_TE_676323 Chr11 15295441 15295440 + AMYLTP 383 0.0007 (2/2965) 0 * * Os_TE_676322 Chr11 15294722 15294723 + RIREX_LTR 8828 0.0003 (1/2973) 0 * Os_TE_676321 Os_TE_676321 Chr11 15294718 15294717 - RIREX_LTR 8828 0.0003 (1/2984) 0 * Os_TE_676322 Os_TE_676315 Chr11 15291287 15291286 + TYPEH 309 0.0040 (12/2992) 0 * Os_TE_676314 Os_TE_676314 Chr11 15291273 15291274 - TYPEH 309 0.0013 (4/2985) 0 * Os_TE_676315 Os_TE_676313 Chr11 15291134 15291135 + Cassandra_OS-LTR 764 0.0003 (1/2991) 0 * Os_TE_676312 Os_TE_676312 Chr11 15291130 15291129 - Cassandra_OS-LTR 764 0.0003 (1/2985) 0 * Os_TE_676313 Os_TE_676256 Chr11 15262868 15262867 + TRUNCATOR 2918 0.0020 (2/1007) 0 * * Os_TE_676246 Chr11 15257264 15257263 - ORSgTETN00200001 10994 0.6767 (1955/2889) 0 * Os_TE_676245 Os_TE_676245 Chr11 15257263 15257264 + CACTA-B 1103 0.6881 (2030/2950) 0 * Os_TE_676246 Os_TE_676241 Chr11 15256616 15256615 - SZ-22_LTR 4403 0.0044 (13/2940) 0 * * Os_TE_676236 Chr11 15253532 15253533 - ORSgTETN00200001 10994 0.0525 (157/2988) 0 * Os_TE_676235 Os_TE_676235 Chr11 15253530 15253529 + SPMLIKE 10989 0.0512 (153/2987) 0 * Os_TE_676236 Os_TE_676230 Chr11 15248788 15248789 + CACTA-I 1124 0.0150 (42/2805) 0 * Os_TE_676229 Os_TE_676229 Chr11 15248786 15248785 - CACTA-M 1129 0.0133 (37/2791) 0 * Os_TE_676230 Os_TE_676196 Chr11 15234739 15234738 - RIRE3_LTR 12054 0.0012 (3/2505) 0 * * Os_TE_676173 Chr11 15223368 15223369 + OSTE33 1012 0.0024 (7/2951) 0 * Os_TE_676172 Os_TE_676172 Chr11 15223358 15223357 - OSTE33 1012 0.0020 (6/2937) 0 * Os_TE_676173 Os_TE_675996 Chr11 15167146 15167145 - TRUNCATOR 2918 0.1001 (289/2888) 0 * Os_TE_675995 Os_TE_675995 Chr11 15167145 15167146 + TRUNCATOR 2918 0.1308 (386/2952) 0 * Os_TE_675996 Os_TE_675961 Chr11 15149715 15149716 - ORSgTETN00200001 10994 0.6300 (1570/2492) 0 * * Os_TE_675914 Chr11 15138154 15138153 - RIRE3A_LTR 10580 0.0425 (86/2025) 0 * * Os_TE_675881 Chr11 15127678 15127679 - RIRE3A_LTR 10580 0.0073 (7/964) 0 * * Os_TE_675852 Chr11 15116415 15116416 + CACTA-H 1152 0.0024 (7/2934) 0 * * Os_TE_675791 Chr11 15082298 15078043 - EnSpm-N1_OS 4256 0.3083 (906/2939) 1 Intact * Os_TE_675789 Chr11 15075679 15075680 - ORSgTETN00200001 10994 0.0037 (11/2981) 0 * * Os_TE_675750 Chr11 15063281 15063280 + RIRE3_LTR 12054 0.0010 (3/2949) 0 * * Os_TE_675627 Chr11 15007377 15007378 - RETRO2_LTR 12874 0.0274 (81/2958) 0 * Os_TE_675626 Os_TE_675626 Chr11 15007373 15007372 + RETRO2A_LTR 12895 0.0274 (81/2960) 0 * Os_TE_675627 Os_TE_675625 Chr11 15005790 15005789 - COPIA2-LTR_OS 6433 0.0003 (1/2962) 0 * * Os_TE_675620 Chr11 15005126 15005127 + COPIA2-LTR_OS 6433 0.0150 (13/867) 0 * Os_TE_675619 Os_TE_675619 Chr11 15005122 15005121 - COPIA2-LTR_OS 6433 0.0085 (7/825) 0 * Os_TE_675620 Os_TE_675615 Chr11 15003019 15003020 - MERMITED 1572 0.0041 (12/2903) 0 * * Os_TE_675613 Chr11 15002992 15002993 + MuDR2_OS 6770 0.0003 (1/2923) 0 * Os_TE_675612 Os_TE_675612 Chr11 15002983 15002982 - MuDR2_OS 6770 0.0003 (1/2905) 0 * Os_TE_675613 Os_TE_675590 Chr11 14995963 14995964 - TRUNCATOR 2918 0.0004 (1/2840) 0 * * Os_TE_675552 Chr11 14978385 14978386 - ORSgTEMT02400179 221 0.0043 (13/2996) 0 * Os_TE_675551 Os_TE_675551 Chr11 14978384 14978383 - TYPEM 227 0.0037 (11/2993) 0 * Os_TE_675552 Os_TE_675524 Chr11 14965345 14965346 + ORSiTERTOOT00296 5553 0.0003 (1/2988) 0 * Os_TE_675523 Os_TE_675523 Chr11 14965341 14965340 - SC-3_LTR 5748 0.0003 (1/2988) 0 * Os_TE_675524 Os_TE_675522 Chr11 14964375 14964376 - SC-8_LTR 4951 0.0007 (2/2970) 0 * Os_TE_675521 Os_TE_675521 Chr11 14964371 14964370 + SC-8_LTR 4951 0.0007 (2/2974) 0 * Os_TE_675522 Os_TE_675520 Chr11 14964147 14964148 - ORSiTERTOOT00385 6000 0.0003 (1/2969) 0 * * Os_TE_675506 Chr11 14959612 14959613 - F770 284 0.0020 (6/2977) 0 * Os_TE_675505 Os_TE_675505 Chr11 14959610 14959609 + F770 284 0.0020 (6/2973) 0 * Os_TE_675506 Os_TE_675503 Chr11 14959323 14959322 - ORSgTEMT02400246 177 0.0262 (78/2981) 0 * * Os_TE_675424 Chr11 14935885 14935884 + TRUNCATOR 2918 0.3964 (765/1930) 0 * Os_TE_675423 Os_TE_675423 Chr11 14935884 14935885 - TRUNCATOR 2918 0.3923 (756/1927) 0 * Os_TE_675424 Os_TE_675421 Chr11 14935168 14935169 - ENSPM3_OS 10837 0.0865 (167/1930) 0 * * Os_TE_675412 Chr11 14924646 14924645 - TRUNCATOR 2918 0.3789 (1115/2943) 0 * * Os_TE_675326 Chr11 14892350 14892351 - AMYLTP 383 0.0023 (7/2991) 0 * Os_TE_675325 Os_TE_675325 Chr11 14892342 14892341 + AMYLTP 383 0.0023 (7/2991) 0 * Os_TE_675326 Os_TE_675312 Chr11 14881990 14881991 - MPING 430 0.0003 (1/2993) 0 * Os_TE_675311 Os_TE_675311 Chr11 14881988 14881987 + MPING 430 0.0003 (1/2982) 0 * Os_TE_675312 Os_TE_675277 Chr11 14865167 14865166 - ENSPM4_OS 11610 0.0023 (7/2993) 0 * * Os_TE_675276 Chr11 14865011 14865012 + RIREX_LTR 8828 0.0007 (2/2993) 0 * Os_TE_675275 Os_TE_675275 Chr11 14865007 14865006 - RIREX_LTR 8828 0.0007 (2/2989) 0 * Os_TE_675276 Os_TE_675271 Chr11 14863658 14863659 - RIREX_LTR 8828 0.0003 (1/2914) 0 * * Os_TE_675243 Chr11 14855955 14855956 + ORSgTERTOOT00009 12852 0.0003 (1/2998) 0 * Os_TE_675242 Os_TE_675242 Chr11 14855951 14855950 - RETRO2_LTR 12874 0.0003 (1/2998) 0 * Os_TE_675243 Os_TE_675239 Chr11 14855631 14855632 + ORSiTERTOOT00427 5125 0.0020 (6/2983) 0 * Os_TE_675238 Os_TE_675238 Chr11 14855627 14855626 - ORSiTERTOOT00427 5125 0.0020 (6/2981) 0 * Os_TE_675239 Os_TE_675229 Chr11 14852788 14852787 + ORSgTETN00200005 1121 0.3047 (900/2954) 0 * Os_TE_675228 Os_TE_675228 Chr11 14852784 14852785 + CACTA-B 1103 0.3120 (926/2968) 0 * Os_TE_675229 Os_TE_675223 Chr11 14851618 14851617 + COPI2_LTR 4733 0.0003 (1/2940) 0 * * Os_TE_675198 Chr11 14833336 14833337 + ORSiTERTOOT00296 5553 0.0030 (9/2983) 0 * Os_TE_675197 Os_TE_675197 Chr11 14833332 14833331 - SC-3_LTR 5748 0.0027 (8/2981) 0 * Os_TE_675198 Os_TE_675177 Chr11 14825236 14825237 + ORSiTERTOOT00296 5553 0.0003 (1/2989) 0 * * Os_TE_675141 Chr11 14810909 14810910 - JOUZHENA 607 0.0025 (7/2817) 0 * Os_TE_675140 Os_TE_675140 Chr11 14810902 14810901 + JOUZHENA 607 0.0018 (5/2781) 0 * Os_TE_675141 Os_TE_675074 Chr11 14790085 14790086 + ORSgTEMT01601591 242 0.0003 (1/2980) 0 * * Os_TE_675059 Chr11 14786538 14786537 + ORSgTEMT01601591 242 0.0605 (181/2993) 0 * Os_TE_675058 Os_TE_675058 Chr11 14786532 14786533 + STOWAWAY51_OS 246 0.0584 (174/2982) 0 * Os_TE_675059 Os_TE_675056 Chr11 14786469 14786468 - INDITTO 263 0.0122 (36/2961) 0 * * Os_TE_675023 Chr11 14773278 14773279 - RETRO2_LTR 12874 0.0024 (7/2962) 0 * * Os_TE_674994 Chr11 14759028 14759027 - RIREX_LTR 8828 0.0020 (6/2929) 0 * * Os_TE_674993 Chr11 14758111 14758112 - ORSgTEMT00900099 250 0.0003 (1/2937) 0 * * Os_TE_674970 Chr11 14753195 14753194 - COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * * Os_TE_674952 Chr11 14748387 14748388 - TRUNCATOR2_LTR 2904 0.0023 (7/2994) 0 * Os_TE_674951 Os_TE_674951 Chr11 14748383 14748382 + ORSiCMCM00100019 2717 0.0020 (6/2993) 0 * Os_TE_674952 Os_TE_674949 Chr11 14747382 14747383 - SZ-22_LTR 4403 0.0629 (188/2989) 0 * Os_TE_674948 Os_TE_674948 Chr11 14747378 14747377 + ORSiTERTOOT00226 792 0.0641 (192/2994) 0 * Os_TE_674949 Os_TE_674947 Chr11 14746560 14746561 - SZ-48LTR 3632 0.0017 (5/2957) 0 * * Os_TE_674935 Chr11 14744993 14744994 + RETRO2_LTR 12874 0.6897 (2054/2978) 0 * * Os_TE_674924 Chr11 14742083 14742084 - ORSgTETN00200001 10994 0.3025 (881/2912) 0 * Os_TE_674923 Os_TE_674923 Chr11 14742081 14742080 + SPMLIKE 10989 0.3249 (969/2982) 0 * Os_TE_674924 Os_TE_674920 Chr11 14741351 14741350 - ORSgTEMT02400246 177 0.0007 (2/2956) 0 * Os_TE_674919 Os_TE_674919 Chr11 14741350 14741351 - TYPEM 227 0.0007 (2/2941) 0 * Os_TE_674920 Os_TE_674843 Chr11 14715062 14715063 + MPING 430 0.0004 (1/2739) 0 * * Os_TE_674840 Chr11 14714877 14714878 + RIREX_LTR 8828 0.0004 (1/2704) 0 * Os_TE_674839 Os_TE_674839 Chr11 14714873 14714872 - RIREX_LTR 8828 0.0004 (1/2721) 0 * Os_TE_674840 Os_TE_674801 Chr11 14705894 14705893 + RIREX_LTR 8828 0.0003 (1/2994) 0 * * Os_TE_674778 Chr11 14695213 14695214 + RIREX_LTR 8828 0.0591 (177/2994) 0 * Os_TE_674777 Os_TE_674777 Chr11 14695209 14695208 - RIREX_LTR 8828 0.0584 (175/2995) 0 * Os_TE_674778 Os_TE_674751 Chr11 14686956 14686955 - RETROSAT2LTRA 3112 0.0003 (1/2954) 0 * * Os_TE_674721 Chr11 14673992 14673993 - COPI2_LTR 4733 0.6981 (2081/2981) 0 * * Os_TE_674720 Chr11 14673988 14673987 + COPI2_LTR 4733 0.0663 (195/2943) 0 * * Os_TE_674719 Chr11 14673613 14673614 - ENSPM4_OS 11610 0.0023 (7/2995) 0 * * Os_TE_674714 Chr11 14670840 14670841 + RETRO1_LTR 8314 0.0003 (1/2973) 0 * Os_TE_674713 Os_TE_674713 Chr11 14670836 14670835 - RETRO1_LTR 8314 0.0003 (1/2970) 0 * Os_TE_674714 Os_TE_674697 Chr11 14663496 14663497 - MuDR2_OS 6770 0.0003 (1/2983) 0 * Os_TE_674696 Os_TE_674696 Chr11 14663487 14663486 + MuDR2_OS 6770 0.0003 (1/2982) 0 * Os_TE_674697 Os_TE_674690 Chr11 14660819 14660820 + COPIA2-LTR_OS 6433 0.0003 (1/2984) 0 * Os_TE_674689 Os_TE_674689 Chr11 14660815 14660814 - COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * Os_TE_674690 Os_TE_674645 Chr11 14636929 14636930 + RIRE2_LTR 11306 0.0007 (2/2995) 0 * Os_TE_674644 Os_TE_674644 Chr11 14636925 14636924 - RIRE2_LTR 11306 0.0007 (2/2995) 0 * Os_TE_674645 Os_TE_674634 Chr11 14634767 14634768 + ORSiTERTOOT00226 792 0.3283 (933/2842) 0 * Os_TE_674633 Os_TE_674633 Chr11 14634763 14634762 - SZ-22_LTR 4403 0.3367 (904/2685) 0 * Os_TE_674634 Os_TE_674628 Chr11 14633725 14633724 + TRUNCATOR 2918 0.0590 (175/2964) 0 * * Os_TE_674572 Chr11 14610087 14610086 + TRUNCATOR 2918 0.3779 (865/2289) 0 * Os_TE_674571 Os_TE_674571 Chr11 14610084 14610085 - TRUNCATOR 2918 0.3468 (764/2203) 0 * Os_TE_674572 Os_TE_674569 Chr11 14609457 14609458 - MERMITE18C 1473 0.3750 (1084/2891) 0 * Os_TE_674568 Os_TE_674568 Chr11 14609455 14609454 + MERMITE18D 1491 0.3874 (1132/2922) 0 * Os_TE_674569 Os_TE_674516 Chr11 14586329 14586330 + RETROSAT2LTR 12796 0.2800 (809/2889) 0 * * Os_TE_674502 Chr11 14582548 14582033 - CLOUD-6 508 0.3188 (940/2949) 1 Intact Os_TE_674500 Os_TE_674500 Chr11 14582033 14582548 + CLOUD-6 508 0.3209 (944/2942) 1 Intact Os_TE_674502 Os_TE_674492 Chr11 14580725 14580726 - INDITTO 263 0.0588 (174/2959) 0 * * Os_TE_674486 Chr11 14577536 14577535 + ORSiTETNOOT00107 906 0.0030 (9/2971) 0 * Os_TE_674485 Os_TE_674485 Chr11 14577534 14577535 - ORSiTETNOOT00107 906 0.0029 (8/2767) 0 * Os_TE_674486 Os_TE_674483 Chr11 14576995 14576994 + COPIA2-LTR_OS 6433 0.0003 (1/2899) 0 * * Os_TE_674478 Chr11 14575806 14574621 + CACTA-J 1159 0.3312 (929/2805) 1 Intact * Os_TE_674470 Chr11 14570200 14570201 + RIREX_LTR 8828 0.0004 (1/2701) 0 * * Os_TE_674463 Chr11 14566242 14566243 - ORSgTEMT01700794 153 0.6903 (2062/2987) 0 * * Os_TE_674450 Chr11 14562807 14562808 - MuDR4_OS 7610 0.6851 (2006/2928) 0 * Os_TE_674449 Os_TE_674449 Chr11 14562801 14562800 - MuDR4_OS 7610 0.6898 (2048/2969) 0 * Os_TE_674450 Os_TE_674386 Chr11 14529674 14529673 - ORSgTETN00200001 10994 0.0023 (7/2993) 0 * * Os_TE_674385 Chr11 14528724 14528723 + CACTA-B 1103 0.6466 (1905/2946) 0 * * Os_TE_674371 Chr11 14525688 14525689 + COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_674370 Os_TE_674370 Chr11 14525684 14525683 - COPI2_LTR 4733 0.0003 (1/2999) 0 * Os_TE_674371 Os_TE_674323 Chr11 14505860 14505861 + SZ-9LTR 965 0.0024 (7/2916) 0 * Os_TE_674322 Os_TE_674322 Chr11 14505856 14505855 - SZ-9LTR 965 0.0024 (7/2913) 0 * Os_TE_674323 Os_TE_674318 Chr11 14505086 14505085 + TRUNCATOR 2918 0.0088 (26/2945) 0 * Os_TE_674317 Os_TE_674317 Chr11 14505085 14505086 - TRUNCATOR 2918 0.0088 (26/2960) 0 * Os_TE_674318 Os_TE_674285 Chr11 14494803 14493389 + OSTE33 1012 0.3108 (930/2992) 1 Intact Os_TE_674283 Os_TE_674283 Chr11 14493389 14494803 + OSTE33 1012 0.3118 (932/2989) 1 Intact Os_TE_674285 Os_TE_674279 Chr11 14491101 14491100 + ATLANTYS-LTR_OS 13740 0.0130 (39/2991) 0 * * Os_TE_674124 Chr11 14398787 14398786 + ORSiTERTOOT00027 10853 0.0025 (7/2804) 0 * * Os_TE_674120 Chr11 14398464 14398465 + COPIA2-LTR_OS 6433 0.0025 (7/2785) 0 * * Os_TE_674118 Chr11 14398188 14398187 - ORSgTEMT01601432 239 0.0025 (7/2786) 0 * Os_TE_674117 Os_TE_674117 Chr11 14398186 14398187 + ORSgTEMT01602609 233 0.0021 (6/2795) 0 * Os_TE_674118 Os_TE_674055 Chr11 14369416 14369417 - MIDWAY 985 0.0015 (4/2695) 0 * * Os_TE_674054 Chr11 14369394 14369395 + F569 228 0.1529 (256/1674) 0 * Os_TE_674053 Os_TE_674053 Chr11 14369392 14369391 - F569 228 0.2481 (737/2970) 0 * Os_TE_674054 Os_TE_674023 Chr11 14360899 14360898 - TRUNCATOR 2918 0.3332 (891/2674) 0 * Os_TE_674022 Os_TE_674022 Chr11 14360898 14360899 + TRUNCATOR 2918 0.4081 (1179/2889) 0 * Os_TE_674023 Os_TE_673961 Chr11 14335019 14335020 + F569 228 0.0273 (81/2962) 0 * Os_TE_673960 Os_TE_673960 Chr11 14335017 14335016 - F569 228 0.0276 (82/2974) 0 * Os_TE_673961 Os_TE_673956 Chr11 14331832 14331831 - AMYLTP 383 0.0024 (7/2928) 0 * Os_TE_673955 Os_TE_673955 Chr11 14331830 14331831 + ORSgTEMT00800058 376 0.0021 (6/2918) 0 * Os_TE_673956 Os_TE_673952 Chr11 14331665 14331664 + INDITTO 263 0.0007 (2/2863) 0 * * Os_TE_673938 Chr11 14321852 14321851 - ORSgTERT00201216 11284 0.0087 (26/2990) 0 * * Os_TE_673936 Chr11 14321362 14321363 + TWIFB1 3737 0.0023 (7/2985) 0 * * Os_TE_673927 Chr11 14316116 14316115 - RIRE2_LTR 11306 0.0017 (5/2966) 0 * * Os_TE_673923 Chr11 14315183 14315184 + ORSiTERTOOT00226 792 0.0011 (3/2838) 0 * * Os_TE_673901 Chr11 14307389 14307390 - CRM-LTR_OS 7749 0.0003 (1/2932) 0 * Os_TE_673900 Os_TE_673900 Chr11 14307385 14307384 + CRM-LTR_OS 7749 0.0003 (1/2929) 0 * Os_TE_673901 Os_TE_673873 Chr11 14290742 14290743 + CACTA-H 1152 0.0003 (1/2964) 0 * Os_TE_673872 Os_TE_673872 Chr11 14290740 14290739 - CACTA-H 1152 0.0003 (1/2948) 0 * Os_TE_673873 Os_TE_673870 Chr11 14287423 14290169 + SEVERIN-2 1952 0.6240 (1741/2790) 1 Intact * Os_TE_673869 Chr11 14287358 14287197 - ORSgTEMT00501384 148 0.6244 (1820/2915) 1 Intact Os_TE_673866 Os_TE_673866 Chr11 14287196 14287354 + ORSgTEMT00501441 144 0.6589 (1856/2817) 1 Intact Os_TE_673869 Os_TE_673831 Chr11 14277535 14277534 - TRUNCATOR2_LTR 2904 0.0057 (17/2998) 0 * * Os_TE_673830 Chr11 14277277 14277278 - RIRE2_LTR 11306 0.0007 (2/2991) 0 * * Os_TE_673818 Chr11 14268733 14268734 + STOWAWAY21_OS 243 0.0060 (18/2991) 0 * * Os_TE_673817 Chr11 14268665 14268666 + COPIA2-LTR_OS 6433 0.0007 (2/2990) 0 * Os_TE_673816 Os_TE_673816 Chr11 14268661 14268660 - COPIA2-LTR_OS 6433 0.0007 (2/2985) 0 * Os_TE_673817 Os_TE_673815 Chr11 14267742 14267743 - MPING 430 0.0014 (4/2884) 0 * Os_TE_673814 Os_TE_673814 Chr11 14267740 14267739 + MPING 430 0.0017 (5/2925) 0 * Os_TE_673815 Os_TE_673808 Chr11 14264631 14264632 + SPMLIKE 10989 0.0003 (1/2965) 0 * * Os_TE_673787 Chr11 14249121 14249120 - COPIA2-LTR_OS 6433 0.0010 (3/2939) 0 * * Os_TE_673757 Chr11 14226921 14226922 + CRM-LTR_OS 7749 0.0003 (1/2895) 0 * Os_TE_673756 Os_TE_673756 Chr11 14226917 14226916 - CRM-LTR_OS 7749 0.0003 (1/2921) 0 * Os_TE_673757 Os_TE_673754 Chr11 14226881 14226880 - ORSiTETNOOT00200 3563 0.0017 (5/2878) 0 * * Os_TE_673750 Chr11 14226363 14226362 - ORSgTETNOOT02565 240 0.0024 (7/2966) 0 * * Os_TE_673749 Chr11 14225718 14225719 + RIRE3_LTR 12054 0.0023 (7/2982) 0 * Os_TE_673748 Os_TE_673748 Chr11 14225714 14225713 - RIRE3_LTR 12054 0.0023 (7/2987) 0 * Os_TE_673749 Os_TE_673743 Chr11 14222060 14222061 - TRUNCATOR2_LTR 2904 0.0080 (24/2982) 0 * Os_TE_673742 Os_TE_673742 Chr11 14222056 14222055 + TRUNCATOR2_LTR 2904 0.0084 (25/2980) 0 * Os_TE_673743 Os_TE_673710 Chr11 14207335 14206998 + ORSgTEMT00100949 340 0.3120 (934/2994) 1 Intact Os_TE_673709 Os_TE_673709 Chr11 14206997 14207317 + ORSgTEMT00100531 325 0.3139 (941/2998) 1 Intact Os_TE_673710 Os_TE_673702 Chr11 14204551 14204552 + ENSPM3_OS 10837 0.0020 (6/2976) 0 * Os_TE_673701 Os_TE_673701 Chr11 14204549 14204548 - ENSPM3_OS 10837 0.0020 (6/2977) 0 * Os_TE_673702 Os_TE_673695 Chr11 14202397 14202398 - ORSgTETN00200001 10994 0.4028 (1078/2676) 0 * * Os_TE_673641 Chr11 14183974 14183975 + ORSgTEMT01602181 239 0.0020 (6/2957) 0 * * Os_TE_673632 Chr11 14181836 14170375 - ORSgTETN00200001 10994 0.2857 (822/2877) 1 Intact * Os_TE_673620 Chr11 14170129 14170130 + SEVERIN-2 1952 0.0037 (11/2979) 0 * * Os_TE_673613 Chr11 14167309 14167308 - ORSgTEMT01601493 303 0.0024 (7/2972) 0 * Os_TE_673612 Os_TE_673612 Chr11 14167306 14167307 + ORSgTEMT01601934 207 0.0027 (8/2975) 0 * Os_TE_673613 Os_TE_673610 Chr11 14165883 14165882 - CACTA-I 1124 0.0024 (7/2875) 0 * * Os_TE_673608 Chr11 14164469 14164470 - SZ-36LTR 5825 0.0023 (7/2996) 0 * Os_TE_673607 Os_TE_673607 Chr11 14164465 14164464 + SZ-36LTR 5825 0.0023 (7/2991) 0 * Os_TE_673608 Os_TE_673596 Chr11 14160516 14154081 + RIRE5-LTR_OS 6427 0.3011 (882/2929) 1 Intact Os_TE_673594 Os_TE_673594 Chr11 14154081 14160516 - RIRE5-LTR_OS 6427 0.3173 (943/2972) 1 Intact Os_TE_673596 Os_TE_673591 Chr11 14153464 14153463 + DASIA-2 1198 0.0007 (2/2958) 0 * * Os_TE_673545 Chr11 14135116 14135115 + SZ-9LTR 965 0.3229 (756/2341) 0 * * Os_TE_673519 Chr11 14128432 14128431 - SC-3_LTR 5748 0.0003 (1/2974) 0 * * Os_TE_673509 Chr11 14125922 14125923 - SZ-46LTR 3360 0.0022 (6/2787) 0 * * Os_TE_673506 Chr11 14125617 14125616 + ORSgTERT00200063 5773 0.0004 (1/2292) 0 * * Os_TE_673494 Chr11 14123002 14123001 + SZ-61LTR 2410 0.0027 (8/2977) 0 * * Os_TE_673493 Chr11 14122564 14122563 - RIRE2_LTR 11306 0.1518 (447/2945) 0 * * Os_TE_673492 Chr11 14122221 14122560 + ORSgTEMT00101674 340 0.4506 (1071/2377) 1 Intact * Os_TE_673491 Chr11 14121974 14121975 + RIRE2_LTR 11306 0.1520 (455/2993) 0 * * Os_TE_673478 Chr11 14114042 14114043 + ORSiCMCM00100019 2717 0.0007 (2/2980) 0 * * Os_TE_673477 Chr11 14113967 14113966 - TRUNCATOR2_LTR 2904 0.0007 (2/2973) 0 * * Os_TE_673467 Chr11 14110678 14110677 + ORSgTEMT01701591 154 0.0003 (1/2918) 0 * * Os_TE_673466 Chr11 14110655 14109354 - CLOUD-7 495 0.7995 (2369/2963) 1 Intact * Os_TE_673463 Chr11 14110339 14110338 - ATLANTYS-LTR_OS 13740 0.0033 (8/2402) 0 * * Os_TE_673449 Chr11 14101363 14101070 + OSTE28 298 0.8077 (2361/2923) 1 Intact Os_TE_673446 Os_TE_673446 Chr11 14101070 14101363 + OSTE28 298 0.8488 (2336/2752) 1 Intact Os_TE_673449 Os_TE_673434 Chr11 14096032 14096033 + RIRE2_LTR 11306 0.3045 (903/2966) 0 * Os_TE_673433 Os_TE_673433 Chr11 14096028 14096027 - RIRE2_LTR 11306 0.3032 (892/2942) 0 * Os_TE_673434 Os_TE_673426 Chr11 14090475 14090476 - INDITTO 263 0.0024 (6/2508) 0 * Os_TE_673425 Os_TE_673425 Chr11 14090473 14090472 + INDITTO 263 0.0029 (7/2381) 0 * Os_TE_673426 Os_TE_673367 Chr11 14071400 14071401 + SEVERIN-2 1952 0.0020 (3/1470) 0 * * Os_TE_673337 Chr11 14054432 14054433 - CRM-LTR_OS 7749 0.0006 (1/1597) -1 * * Os_TE_673323 Chr11 14051869 14051868 - ORSgTEMT00101174 225 0.2037 (601/2950) 0 * Os_TE_673322 Os_TE_673322 Chr11 14051866 14051867 - ORSgTEMT02600002 356 0.2098 (624/2974) 0 * Os_TE_673323 Os_TE_673312 Chr11 14046291 14047567 - OSTE15 1168 0.8585 (2378/2770) 1 Intact * Os_TE_673311 Chr11 14046264 14046263 + ORSgTEMT00600287 363 0.1499 (414/2761) 0 * * Os_TE_673307 Chr11 14045131 14045130 + ORSgTEMT01701858 154 0.2214 (661/2986) 0 * * Os_TE_673275 Chr11 14035257 14035258 + ORSgTEMT01700513 151 0.0020 (6/2980) 0 * * Os_TE_673271 Chr11 14033525 14033338 - STOWAWAY18_OS 216 0.8052 (2393/2972) 1 Intact Os_TE_673269 Os_TE_673269 Chr11 14033327 14033525 + STOWAWAY18_OS 216 0.8020 (2385/2974) 1 Intact Os_TE_673271 Os_TE_673268 Chr11 14032720 14031328 + ORSgTEMT00600192 355 0.8060 (2377/2949) 1 Intact * Os_TE_673263 Chr11 14031171 14029925 + OSTE15 1168 0.7771 (2183/2809) -1 Intact * Os_TE_673257 Chr11 14024827 14024828 - RETROSAT2LTR 12796 0.0007 (2/2992) 0 * * Os_TE_673256 Chr11 14024473 14024474 + TEMPINDAS 4259 0.2223 (654/2942) 0 * Os_TE_673255 Os_TE_673255 Chr11 14024466 14024465 - TEMPINDAS 4259 0.2035 (587/2885) 0 * Os_TE_673256 Os_TE_673254 Chr11 14024173 14024174 - TRUNCATOR2_LTR 2904 0.6112 (1467/2400) 0 * * Os_TE_673251 Chr11 14023209 14023208 - STOWAWAY30_OS 147 0.3683 (660/1792) 0 * Os_TE_673249 Os_TE_673249 Chr11 14023179 14023180 - STOWAWAY46_OS 154 0.2252 (673/2988) 0 * Os_TE_673251 Os_TE_673237 Chr11 14011478 14011479 - ORSgTEMT01800105 452 0.0032 (9/2854) 0 * Os_TE_673236 Os_TE_673236 Chr11 14011475 14011474 - TYPEG 427 0.0032 (9/2845) 0 * Os_TE_673237 Os_TE_673230 Chr11 14009291 14009292 + DS-RICE4N 715 0.0024 (7/2921) 0 * Os_TE_673229 Os_TE_673229 Chr11 14009284 14009283 - DS-RICE2N 613 0.0024 (7/2924) 0 * Os_TE_673230 Os_TE_673185 Chr11 13993108 13993107 - MDR2 6967 0.0008 (2/2573) 0 * * Os_TE_673174 Chr11 13991705 13991704 - ORSgTEMT02400246 177 0.0030 (9/2988) 0 * Os_TE_673173 Os_TE_673173 Chr11 13991704 13991705 - TYPEM 227 0.0030 (9/2990) 0 * Os_TE_673174 Os_TE_673171 Chr11 13991028 13991029 + GYPSY-A_LTR 8951 0.0003 (1/2982) 0 * Os_TE_673170 Os_TE_673170 Chr11 13991024 13991023 - GYPSY-A_LTR 8951 0.0003 (1/2980) 0 * Os_TE_673171 Os_TE_673154 Chr11 13983659 13983660 - RETROSAT2LTRA 3112 0.0023 (7/2992) 0 * * Os_TE_673150 Chr11 13981806 13981805 + NDNA1TNA_OS 334 0.0021 (6/2830) 0 * * Os_TE_673123 Chr11 13967996 13967997 + SZ-40LTR 2465 0.0057 (17/2997) 0 * Os_TE_673122 Os_TE_673122 Chr11 13967992 13967991 - GYPSY-A_LTR 8951 0.0057 (17/2996) 0 * Os_TE_673123 Os_TE_673115 Chr11 13964247 13964248 + COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_673114 Os_TE_673114 Chr11 13964243 13964242 - COPI2_LTR 4733 0.0003 (1/2992) 0 * Os_TE_673115 Os_TE_673111 Chr11 13963132 13963131 + COPI2_LTR 4733 0.0003 (1/2993) 0 * * Os_TE_673049 Chr11 13929962 13929963 + ORSiTERTOOT00020 2547 0.0007 (2/2806) 0 * Os_TE_673048 Os_TE_673048 Chr11 13929958 13929957 - OSCOPIA1_LTR 4754 0.0012 (3/2464) 0 * Os_TE_673049 Os_TE_673037 Chr11 13927225 13927224 + RETRO2A_LTR 12895 0.0024 (7/2932) 0 * * Os_TE_672998 Chr11 13913550 13913551 - AMYLTP 383 0.0027 (8/2957) 0 * Os_TE_672997 Os_TE_672997 Chr11 13913542 13913541 + AMYLTP 383 0.0030 (9/2955) 0 * Os_TE_672998 Os_TE_672965 Chr11 13894830 13894831 + RETRO1_LTR 8314 0.0025 (7/2824) 0 * Os_TE_672964 Os_TE_672964 Chr11 13894826 13894825 - RETRO1_LTR 8314 0.0018 (5/2839) 0 * Os_TE_672965 Os_TE_672962 Chr11 13893638 13893639 - COPIA2-LTR_OS 6433 0.0003 (1/2973) 0 * Os_TE_672961 Os_TE_672961 Chr11 13893634 13893633 + COPIA2-LTR_OS 6433 0.0003 (1/2978) 0 * Os_TE_672962 Os_TE_672934 Chr11 13883642 13883641 + SPMLIKE 10989 0.0003 (1/2942) 0 * * Os_TE_672922 Chr11 13878164 13878163 - RETROSAT2LTR 12796 0.0024 (7/2968) 0 * * Os_TE_672896 Chr11 13870480 13870479 + SPMLIKE 10989 0.0027 (8/2953) 0 * * Os_TE_672891 Chr11 13868718 13868719 - SZ-9LTR 965 0.0007 (2/2988) 0 * * Os_TE_672888 Chr11 13867919 13867920 - RIREX_LTR 8828 0.0007 (2/2983) 0 * Os_TE_672887 Os_TE_672887 Chr11 13867915 13867914 + RIREX_LTR 8828 0.0007 (2/2988) 0 * Os_TE_672888 Os_TE_672875 Chr11 13864971 13864972 - MPING 430 0.0037 (11/2955) 0 * Os_TE_672873 Os_TE_672873 Chr11 13864955 13864954 + STOWAWAY51_OS 246 0.0010 (3/2949) 0 * Os_TE_672875 Os_TE_672871 Chr11 13864399 13864398 - ORSgTETN00200001 10994 0.0007 (2/2950) 0 * * Os_TE_672820 Chr11 13839609 13839610 - RIRE2_LTR 11306 0.0013 (4/2979) 0 * * Os_TE_672781 Chr11 13810294 13810295 - SZ-9LTR 965 0.5226 (1200/2296) 0 * Os_TE_672780 Os_TE_672780 Chr11 13810290 13810289 + SZ-9LTR 965 0.5260 (1213/2306) 0 * Os_TE_672781 Os_TE_672775 Chr11 13809409 13809408 - RETRO2_LTR 12874 0.5222 (1188/2275) 0 * * Os_TE_672774 Chr11 13808633 13808634 + RIREX_LTR 8828 0.0061 (14/2290) 0 * * Os_TE_672772 Chr11 13807928 13807927 + SZ-58LTR 114 0.0004 (1/2309) 0 * * Os_TE_672770 Chr11 13807442 13807443 + TRUNCATOR 2918 0.5079 (994/1957) 0 * * Os_TE_672713 Chr11 13787463 13787462 + RIRE2_LTR 11306 0.0020 (2/981) 0 * * Os_TE_672711 Chr11 13786820 13786821 + MuDR-5_OS 17471 0.6889 (2059/2989) 0 * * Os_TE_672692 Chr11 13775343 13775344 + RIREX_LTR 8828 0.0138 (40/2896) -1 * Os_TE_672691 Os_TE_672691 Chr11 13775339 13775338 - RIREX_LTR 8828 0.0128 (37/2901) 0 * Os_TE_672692 Os_TE_672652 Chr11 13763683 13763682 + SZ-22_LTR 4403 0.0007 (2/2978) 0 * * Os_TE_672625 Chr11 13752772 13752771 + SZ-4_LTR 5991 0.0013 (4/2969) 0 * * Os_TE_672561 Chr11 13723474 13723704 - ORSgTEMT01602467 227 0.3149 (941/2988) 1 Intact * Os_TE_672551 Chr11 13716450 13716451 - MuDR3_OS 8604 0.0010 (3/2893) 0 * * Os_TE_672533 Chr11 13709678 13709679 + TRUNCATOR 2918 0.0160 (27/1686) 0 * * Os_TE_672532 Chr11 13709302 13709303 - SC-3_LTR 5748 0.6920 (2067/2987) 0 * * Os_TE_672524 Chr11 13705799 13705798 - CACTA-M 1129 0.3888 (1159/2981) 0 * Os_TE_672523 Os_TE_672523 Chr11 13705798 13705799 + CACTA-B 1103 0.3937 (1176/2987) 0 * Os_TE_672524 Os_TE_672490 Chr11 13682004 13682005 - RIREX_LTR 8828 0.0003 (1/2952) 0 * Os_TE_672489 Os_TE_672489 Chr11 13682000 13681999 + RIREX_LTR 8828 0.0003 (1/2915) 0 * Os_TE_672490 Os_TE_672454 Chr11 13671311 13671310 - TRUNCATOR2_LTR 2904 0.1993 (597/2996) 0 * * Os_TE_672437 Chr11 13664168 13664167 - STOWAWAY44_OS 240 0.4373 (1266/2895) 0 * * Os_TE_672431 Chr11 13660216 13660217 + ORSiTERTOOT00226 792 0.0003 (1/2988) 0 * Os_TE_672430 Os_TE_672430 Chr11 13660212 13660211 - SZ-22_LTR 4403 0.0003 (1/2988) 0 * Os_TE_672431 Os_TE_672426 Chr11 13658881 13658882 - COPIA2-LTR_OS 6433 0.0003 (1/2976) 0 * Os_TE_672425 Os_TE_672425 Chr11 13658877 13658876 + COPIA2-LTR_OS 6433 0.0003 (1/2975) 0 * Os_TE_672426 Os_TE_672417 Chr11 13652738 13652739 - MuDR4_OS 7610 0.0017 (5/2972) 0 * Os_TE_672416 Os_TE_672416 Chr11 13652732 13652731 - MuDR4_OS 7610 0.0017 (5/2976) 0 * Os_TE_672417 Os_TE_672414 Chr11 13652149 13652150 - COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * * Os_TE_672404 Chr11 13648239 13648240 + JOUZHENA 607 0.6932 (2067/2982) 0 * * Os_TE_672380 Chr11 13639742 13639741 - COPI2_LTR 4733 0.0003 (1/2981) 0 * * Os_TE_672370 Chr11 13636104 13636105 + ORSiTERTOOT00226 792 0.0003 (1/2993) 0 * Os_TE_672369 Os_TE_672369 Chr11 13636100 13636099 - SZ-22_LTR 4403 0.0003 (1/2991) 0 * Os_TE_672370 Os_TE_672366 Chr11 13632341 13632340 + TRUNCATOR 2918 0.4001 (1196/2989) 0 * * Os_TE_672138 Chr11 13555210 13555211 - RETROSAT2LTR 12796 0.0003 (1/2996) 0 * * Os_TE_672123 Chr11 13549139 13549140 - RIRE2_LTR 11306 0.0024 (7/2978) 0 * Os_TE_672122 Os_TE_672122 Chr11 13549135 13549134 - ORSgTERT00201216 11284 0.0017 (5/2981) 0 * Os_TE_672123 Os_TE_672111 Chr11 13546043 13546044 + TRUNCATOR2_LTR 2904 0.2394 (708/2957) 0 * Os_TE_672110 Os_TE_672110 Chr11 13546039 13546038 - TRUNCATOR2_LTR 2904 0.2566 (769/2997) 0 * Os_TE_672111 Os_TE_672098 Chr11 13543395 13543394 + TRUNCATOR 2918 0.0040 (12/2989) 0 * Os_TE_672097 Os_TE_672097 Chr11 13543394 13543395 - TRUNCATOR 2918 0.0037 (11/2989) 0 * Os_TE_672098 Os_TE_672094 Chr11 13542996 13542997 + TRUNCATOR 2918 0.0542 (162/2990) 0 * * Os_TE_672041 Chr11 13524535 13524534 - SZ-54C_LTR 5249 0.0044 (13/2976) 0 * * Os_TE_672000 Chr11 13511211 13511210 + TRUNCATOR 2918 0.4071 (1208/2967) 0 * Os_TE_671999 Os_TE_671999 Chr11 13511210 13511211 - TRUNCATOR 2918 0.4073 (1210/2971) 0 * Os_TE_672000 Os_TE_671841 Chr11 13451579 13451578 - TRUNCATOR 2918 0.2406 (720/2993) 0 * * Os_TE_671828 Chr11 13447685 13447684 - SZ-22_LTR 4403 0.0007 (2/2972) 0 * * Os_TE_671822 Chr11 13447191 13447190 - TNR12 528 0.0010 (3/2891) 0 * * Os_TE_671795 Chr11 13425718 13425719 - ORSiTETNOOT00156 3648 0.0007 (2/2969) 0 * * Os_TE_671792 Chr11 13424429 13424430 - ORSgTEMT02400179 221 0.4564 (1356/2971) 0 * * Os_TE_671754 Chr11 13400913 13400912 - TRUNCATOR2_LTR 2904 0.0209 (62/2973) 0 * * Os_TE_671684 Chr11 13363581 13363582 - TRUNCATOR2_LTR 2904 0.7098 (2059/2901) 0 * Os_TE_671683 Os_TE_671683 Chr11 13363575 13363574 - ORSiTERT00200154 9386 0.4718 (777/1647) 0 * Os_TE_671684 Os_TE_671674 Chr11 13358837 13358838 - TELIA 141 0.0003 (1/2980) 0 * Os_TE_671673 Os_TE_671673 Chr11 13358829 13358828 + TELIA 141 0.0003 (1/2979) 0 * Os_TE_671674 Os_TE_671670 Chr11 13358703 13357912 + ORSiTERTOOT00226 792 0.3086 (921/2984) 1 Intact Os_TE_671658 Os_TE_671658 Chr11 13354289 13358703 - SZ-22_LTR 4403 0.3087 (920/2980) 1 Intact Os_TE_671670 Os_TE_671648 Chr11 13345208 13345209 - GYPSY-A_LTR 8951 0.0051 (15/2962) 0 * Os_TE_671647 Os_TE_671647 Chr11 13345204 13345203 + SZ-40LTR 2465 0.0051 (15/2965) 0 * Os_TE_671648 Os_TE_671642 Chr11 13340459 13340458 - SC-3_LTR 5748 0.0003 (1/2999) 0 * * Os_TE_671496 Chr11 13288608 13288609 - MUDRN3_OS 903 0.0014 (4/2949) 0 * Os_TE_671495 Os_TE_671495 Chr11 13288600 13288599 + MUDRN2_OS 756 0.0017 (5/2951) 0 * Os_TE_671496 Os_TE_671494 Chr11 13288576 13288577 + ORSiTERTOOT00027 10853 0.0007 (2/2952) 0 * Os_TE_671493 Os_TE_671493 Chr11 13288572 13288571 - RIRE3A_LTR 10580 0.0007 (2/2956) 0 * Os_TE_671494 Os_TE_671463 Chr11 13279646 13279647 - TRUNCATOR2_LTR 2904 0.0006 (1/1783) 0 * * Os_TE_671462 Chr11 13278543 13278544 - OSTE15 1168 0.0073 (13/1770) 0 * * Os_TE_671303 Chr11 13220504 13220503 + CACTA-F 1118 0.0007 (2/2976) 0 * * Os_TE_671266 Chr11 13207413 13207414 + ORSiTERTOOT00097 759 0.0003 (1/2983) 0 * Os_TE_671265 Os_TE_671265 Chr11 13207409 13207408 - SZ-22_LTR 4403 0.0003 (1/2985) 0 * Os_TE_671266 Os_TE_671236 Chr11 13198104 13198103 + RIRE3A_LTR 10580 0.0007 (2/2988) 0 * * Os_TE_671203 Chr11 13191310 13191309 + RIRE3_LTR 12054 0.2497 (743/2975) 0 * * Os_TE_671202 Chr11 13190525 13190526 - RIRE3A_LTR 10580 0.0007 (2/2975) 0 * * Os_TE_671163 Chr11 13177125 13177124 - TRUNCATOR 2918 0.0570 (170/2980) 0 * * Os_TE_671140 Chr11 13173031 13173032 - TRUNCATOR 2918 0.4310 (1243/2884) 0 * * Os_TE_670924 Chr11 13123439 13123440 + ORSiTERTOOT00226 792 0.0293 (85/2901) 0 * * Os_TE_670909 Chr11 13121296 13121297 + ORSiTERTOOT00226 792 0.0003 (1/2876) 0 * * Os_TE_670904 Chr11 13119281 13119282 - ORSgTERT00201216 11284 0.0566 (165/2916) 0 * Os_TE_670903 Os_TE_670903 Chr11 13119277 13119276 - RIRE2_LTR 11306 0.0567 (165/2910) 0 * Os_TE_670904 Os_TE_670902 Chr11 13119113 13115922 - TRUNCATOR2_LTR 2904 0.3159 (917/2903) 1 Intact Os_TE_670901 Os_TE_670901 Chr11 13115922 13119113 + ORSiCMCM00100019 2717 0.3090 (896/2900) 1 Intact Os_TE_670902 Os_TE_670900 Chr11 13115729 13115730 + ORSiTERTOOT00226 792 0.0003 (1/2898) 0 * Os_TE_670899 Os_TE_670899 Chr11 13115725 13115724 - SZ-22_LTR 4403 0.0003 (1/2901) 0 * Os_TE_670900 Os_TE_670852 Chr11 13097993 13097994 + AMYLTP 383 0.4509 (1336/2963) 0 * Os_TE_670851 Os_TE_670851 Chr11 13097986 13097985 - AMYLTP 383 0.4389 (1272/2898) 0 * Os_TE_670852 Os_TE_670841 Chr11 13092894 13092895 - OSLINE1-2 7128 0.0003 (1/2935) 0 * * Os_TE_670704 Chr11 13057090 13057089 - ORSgTETNOOT02565 240 0.0062 (14/2274) 0 * * Os_TE_670695 Chr11 13056718 13056717 - ORSgTEMT05100007 257 0.5365 (1199/2235) 0 * * Os_TE_670370 Chr11 12948876 12948877 + STOWAWAY1_OS 149 0.0054 (9/1659) 0 * Os_TE_670369 Os_TE_670369 Chr11 12948870 12948869 + ORSgTEMT01701591 154 0.0078 (13/1659) 0 * Os_TE_670370 Os_TE_670366 Chr11 12947732 12947733 + SZ-22_LTR 4403 0.1172 (170/1451) 0 * * Os_TE_670257 Chr11 12910384 12910383 + TRUNCATOR 2918 0.0019 (5/2609) 0 * * Os_TE_670235 Chr11 12899164 12899163 - TRUNCATOR2_LTR 2904 0.5285 (1021/1932) 0 * * Os_TE_670080 Chr11 12840847 12840846 - RETROSAT3_LTR 11537 0.0217 (65/2989) 0 * * Os_TE_670074 Chr11 12839425 12839426 - TRUNCATOR2_LTR 2904 0.0040 (12/2995) 0 * * Os_TE_670067 Chr11 12834190 12834191 + ORSiCMCM00100019 2717 0.3670 (969/2640) 0 * * Os_TE_670063 Chr11 12833425 12833426 + ORSiTERTOOT00034 791 0.0003 (1/2985) 0 * Os_TE_670062 Os_TE_670062 Chr11 12833421 12833420 - SZ-22_LTR 4403 0.0003 (1/2986) 0 * Os_TE_670063 Os_TE_670052 Chr11 12823389 12829842 + COPIA2-LTR_OS 6433 0.3001 (894/2979) 1 Intact * Os_TE_670030 Chr11 12812355 12812356 + ORSiTERTOOT00226 792 0.0003 (1/2984) 0 * * Os_TE_670026 Chr11 12811851 12811852 + RIREX_LTR 8828 0.0003 (1/2997) 0 * Os_TE_670025 Os_TE_670025 Chr11 12811847 12811846 - RIREX_LTR 8828 0.0003 (1/2996) 0 * Os_TE_670026 Os_TE_669951 Chr11 12780697 12780696 - TRUNCATOR 2918 0.0003 (1/2868) 0 * * Os_TE_669922 Chr11 12771803 12771804 + ORSiTERTOOT00226 792 0.0217 (64/2948) 0 * Os_TE_669921 Os_TE_669921 Chr11 12771799 12771798 - SZ-22_LTR 4403 0.0219 (65/2970) 0 * Os_TE_669922 Os_TE_669711 Chr11 12676836 12676837 - ORSiTETNOOT00107 906 0.0030 (2/673) -1 * * Os_TE_669668 Chr11 12665474 12665475 + ORSiTERTOOT00085 785 0.0107 (10/935) 0 * * Os_TE_669667 Chr11 12665469 12668592 + RETROSAT2LTR 12796 0.3048 (909/2982) 1 Solo_LTR * Os_TE_669666 Chr11 12665459 12665460 + SZ-22_LTR 4403 0.7113 (2119/2979) 0 * * Os_TE_669590 Chr11 12629980 12629981 - TEMPINDAS 4259 0.0010 (3/2975) 0 * * Os_TE_669525 Chr11 12597630 12597629 - SZ-22_LTR 4403 0.0004 (1/2826) 0 * * Os_TE_669284 Chr11 12191826 12191827 - ENSPM4_OS 11610 0.0578 (172/2975) 0 * * Os_TE_669283 Chr11 12191497 12191498 + ORSiTERTOOT00226 792 0.0004 (1/2553) 0 * Os_TE_669282 Os_TE_669282 Chr11 12191493 12191492 - SZ-22_LTR 4403 0.0003 (1/2969) 0 * Os_TE_669283 Os_TE_669234 Chr11 12143902 12143903 - SC-3_LTR 5748 0.0010 (3/2945) 0 * Os_TE_669233 Os_TE_669233 Chr11 12143898 12143897 + ORSiTERTOOT00296 5553 0.0010 (3/2947) 0 * Os_TE_669234 Os_TE_669146 Chr11 12075583 12075584 - RIREX_LTR 8828 0.0007 (2/2994) 0 * Os_TE_669145 Os_TE_669145 Chr11 12075579 12075578 + RIREX_LTR 8828 0.0007 (2/2997) 0 * Os_TE_669146 Os_TE_669062 Chr11 12002092 11997614 - SZ-22_LTR 4403 0.3074 (918/2986) 1 Intact Os_TE_669054 Os_TE_669054 Chr11 11997614 11998405 + ORSiTERTOOT00226 792 0.3096 (926/2991) 1 Intact Os_TE_669062 Os_TE_669018 Chr11 11980987 11980988 - ORSiTETN00200009 10063 0.0007 (2/2983) 0 * * Os_TE_668974 Chr11 11962292 11962293 + RIRE2_LTR 11306 0.0017 (4/2304) 0 * * Os_TE_668868 Chr11 11911470 11911471 - SC-3_LTR 5748 0.2510 (750/2988) 0 * * Os_TE_668836 Chr11 11898736 11898737 + CRM-LTR_OS 7749 0.0003 (1/2999) 0 * * Os_TE_668831 Chr11 11895426 11895427 - RIREX_LTR 8828 0.0019 (5/2580) 0 * * Os_TE_668779 Chr11 11875785 11875786 - SC-3_LTR 5748 0.0211 (63/2992) 0 * * Os_TE_668569 Chr11 11791016 11791017 - SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_668568 Os_TE_668568 Chr11 11791012 11791011 + SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_668569 Os_TE_668559 Chr11 11785734 11785735 + RIREX_LTR 8828 0.0007 (2/2990) 0 * Os_TE_668558 Os_TE_668558 Chr11 11785730 11785729 - RIREX_LTR 8828 0.0007 (2/2988) 0 * Os_TE_668559 Os_TE_668546 Chr11 11782286 11782287 - RIREX_LTR 8828 0.0003 (1/2971) 0 * Os_TE_668545 Os_TE_668545 Chr11 11782282 11782281 + RIREX_LTR 8828 0.0007 (2/2981) 0 * Os_TE_668546 Os_TE_668530 Chr11 11774580 11774581 + MPING 430 0.0003 (1/2864) 0 * * Os_TE_668467 Chr11 11734536 11721703 - RETRO2_LTR 12874 0.5447 (927/1702) 1 Intact Os_TE_668459 Os_TE_668459 Chr11 11721703 11734536 + RETRO2A_LTR 12895 0.5425 (925/1705) 1 Intact Os_TE_668467 Os_TE_668446 Chr11 11715798 11715799 + RIREX_LTR 8828 0.0003 (1/2972) 0 * Os_TE_668445 Os_TE_668445 Chr11 11715794 11715793 - RIREX_LTR 8828 0.0003 (1/2969) 0 * Os_TE_668446 Os_TE_668404 Chr11 11693236 11693237 - OSTONOR1_LTR 6440 0.0007 (2/2990) 0 * * Os_TE_668327 Chr11 11666220 11666221 - NDNA1TNA_OS 334 0.0030 (9/2976) 0 * * Os_TE_668315 Chr11 11660284 11660285 + GYPSY-A_LTR 8951 0.2137 (564/2639) 0 * Os_TE_668314 Os_TE_668314 Chr11 11660280 11660279 - SZ-40LTR 2465 0.2206 (590/2674) 0 * Os_TE_668315 Os_TE_668290 Chr11 11650988 11650987 + RIRE2_LTR 11306 0.0007 (2/2990) 0 * * Os_TE_668284 Chr11 11648470 11648471 - CACTA-H 1152 0.0549 (163/2970) 0 * * Os_TE_668281 Chr11 11647904 11647903 - TRUNCATOR 2918 0.0566 (169/2988) 0 * * Os_TE_668177 Chr11 11605315 11605316 - OSLINE1-2 7128 0.0003 (1/2971) 0 * * Os_TE_668157 Chr11 11599401 11599402 - SZ-22_LTR 4403 0.0573 (170/2969) 0 * Os_TE_668156 Os_TE_668156 Chr11 11599397 11599396 + ORSiTERTOOT00034 791 0.0578 (172/2976) 0 * Os_TE_668157 Os_TE_668152 Chr11 11598803 11598802 - MDR2 6967 0.1425 (421/2954) 0 * * Os_TE_668147 Chr11 11597645 11597646 + SZ-30_LTR 6377 0.0004 (1/2783) 0 * * Os_TE_668131 Chr11 11592921 11592922 + INDITTO 263 0.0024 (7/2901) 0 * Os_TE_668130 Os_TE_668130 Chr11 11592919 11592918 - INDITTO 263 0.0024 (7/2894) 0 * Os_TE_668131 Os_TE_668129 Chr11 11591673 11591674 + RIRE5-LTR_OS 6427 0.0007 (2/2981) 0 * Os_TE_668128 Os_TE_668128 Chr11 11591666 11591665 - RIRE5-LTR_OS 6427 0.0007 (2/2982) 0 * Os_TE_668129 Os_TE_668121 Chr11 11588699 11588700 + ORSgTEMT01601143 237 0.0003 (1/2869) 0 * * Os_TE_668119 Chr11 11587850 11587851 - COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * Os_TE_668118 Os_TE_668118 Chr11 11587846 11587845 + COPIA2-LTR_OS 6433 0.0003 (1/2984) 0 * Os_TE_668119 Os_TE_668103 Chr11 11581987 11581986 - TRUNCATOR 2918 0.0040 (12/2992) 0 * Os_TE_668102 Os_TE_668102 Chr11 11581986 11581987 + TRUNCATOR 2918 0.0040 (12/2992) 0 * Os_TE_668103 Os_TE_668101 Chr11 11581089 11581090 - COPIA2-LTR_OS 6433 0.0003 (1/2984) 0 * * Os_TE_667991 Chr11 11541470 11541469 - RETROSAT2LTR 12796 0.0499 (149/2986) 0 * * Os_TE_667841 Chr11 11486545 11486544 + ORSgTEMT00700017 386 0.0003 (1/2940) 0 * * Os_TE_667759 Chr11 11455038 11455039 - RIREX_LTR 8828 0.0003 (1/2993) 0 * * Os_TE_667742 Chr11 11441880 11436715 + HARB-1_OS 5166 0.0474 (141/2977) 1 Intact Os_TE_667741 Os_TE_667741 Chr11 11436715 11441880 - HARB-1_OS 5166 0.0477 (142/2976) 1 Intact Os_TE_667742 Os_TE_667736 Chr11 11433696 11433697 + MPING 430 0.0003 (1/2939) 0 * * Os_TE_667722 Chr11 11431548 11431549 - TYPEM 227 0.0007 (2/2826) 0 * * Os_TE_667716 Chr11 11428978 11428979 - NDNA1TNA_OS 334 0.0003 (1/2972) 0 * Os_TE_667715 Os_TE_667715 Chr11 11428976 11428975 + NDNA1TNA_OS 334 0.0003 (1/2965) 0 * Os_TE_667716 Os_TE_667679 Chr11 11406625 11406626 + ORSgTEMT00600124 361 0.0003 (1/2960) 0 * * Os_TE_667674 Chr11 11405877 11405876 - COPIA2-LTR_OS 6433 0.6997 (2092/2990) 0 * * Os_TE_667671 Chr11 11405077 11405076 - OSTE33 1012 0.0525 (154/2931) 0 * * Os_TE_667660 Chr11 11401163 11401162 - CLOUD 734 0.0003 (1/2914) 0 * * Os_TE_667627 Chr11 11384691 11384692 + TRUNCATOR 2918 0.1993 (597/2995) 0 * * Os_TE_667622 Chr11 11382898 11382897 + TWIF 586 0.0003 (1/2995) 0 * * Os_TE_667610 Chr11 11377823 11378478 - OSTE24 683 0.3022 (856/2833) 1 Intact * Os_TE_667602 Chr11 11369165 11369166 - RIRE3_LTR 12054 0.1982 (592/2987) 0 * Os_TE_667601 Os_TE_667601 Chr11 11369161 11369160 + RIRE3_LTR 12054 0.1981 (592/2988) 0 * Os_TE_667602 Os_TE_667552 Chr11 11351246 11351247 - RIRE2_LTR 11306 0.0024 (7/2907) 0 * Os_TE_667551 Os_TE_667551 Chr11 11351242 11351241 + RIRE2_LTR 11306 0.0024 (7/2901) 0 * Os_TE_667552 Os_TE_667546 Chr11 11345726 11345727 - RETRO1_LTR 8314 0.0003 (1/2961) 0 * * Os_TE_667523 Chr11 11337034 11337035 + ORSgTETNOOT00032 218 0.0030 (9/2994) 0 * * Os_TE_667509 Chr11 11334537 11334536 + ORSiTERTOOT00028 8600 0.0003 (1/2979) 0 * * Os_TE_667352 Chr11 11260829 11260830 - ORSgTETN00200001 10994 0.2979 (736/2471) 0 * * Os_TE_667344 Chr11 11257458 11257459 - ORSgTEMT00600484 344 0.6475 (1637/2528) 0 * Os_TE_667343 Os_TE_667343 Chr11 11257456 11257455 - ORSgTEMT00600085 364 0.6576 (1709/2599) 0 * Os_TE_667344 Os_TE_667336 Chr11 11254748 11254747 - TRUNCATOR 2918 0.2254 (591/2622) 0 * Os_TE_667335 Os_TE_667335 Chr11 11254747 11254748 + TRUNCATOR 2918 0.2251 (591/2625) 0 * Os_TE_667336 Os_TE_667298 Chr11 11230486 11230487 + RIREX_LTR 8828 0.0004 (1/2454) 0 * * Os_TE_667295 Chr11 11227224 11227225 + MUDRN5_OS 374 0.0004 (1/2365) 0 * Os_TE_667294 Os_TE_667294 Chr11 11227223 11227222 - ORSgTEMT00700002 381 0.0004 (1/2358) 0 * Os_TE_667295 Os_TE_667292 Chr11 11224585 11224586 + ORSgTETNOOT01219 231 0.0030 (9/2979) 0 * Os_TE_667291 Os_TE_667291 Chr11 11224577 11224576 + ORSgTETNOOT00908 242 0.0030 (9/2980) 0 * Os_TE_667292 Os_TE_667285 Chr11 11223946 11223947 - CACTA-H 1152 0.6755 (1838/2721) 0 * Os_TE_667284 Os_TE_667284 Chr11 11223944 11223943 + CACTA-I 1124 0.7054 (2071/2936) 0 * Os_TE_667285 Os_TE_667268 Chr11 11210445 11210444 + TRUNCATOR 2918 0.3756 (1122/2987) 0 * Os_TE_667267 Os_TE_667267 Chr11 11210444 11210445 - TRUNCATOR 2918 0.3669 (1087/2963) 0 * Os_TE_667268 Os_TE_667259 Chr11 11207705 11207706 - SC-3_LTR 5748 0.0003 (1/2986) 0 * Os_TE_667258 Os_TE_667258 Chr11 11207701 11207700 + ORSiTERTOOT00296 5553 0.0003 (1/2987) 0 * Os_TE_667259 Os_TE_667257 Chr11 11205786 11205787 - SC-3_LTR 5748 0.0003 (1/2985) 0 * Os_TE_667256 Os_TE_667256 Chr11 11205782 11205781 + ORSiTERTOOT00296 5553 0.0003 (1/2983) 0 * Os_TE_667257 Os_TE_667246 Chr11 11199290 11199289 + TRUNCATOR 2918 0.0265 (79/2976) 0 * * Os_TE_667238 Chr11 11193560 11193559 - MuDR4_OS 7610 0.0023 (7/2989) 0 * * Os_TE_667224 Chr11 11191974 11191973 - RIREX_LTR 8828 0.0003 (1/2971) 0 * * Os_TE_667222 Chr11 11191121 11191120 + GYPSY-A_LTR 8951 0.0023 (7/2987) 0 * * Os_TE_667072 Chr11 11130786 11130787 + TRUNCATOR 2918 0.4578 (1368/2988) 0 * * Os_TE_667021 Chr11 11115737 11115738 - RIREX_LTR 8828 0.0007 (2/2987) 0 * Os_TE_667020 Os_TE_667020 Chr11 11115733 11115732 + RIREX_LTR 8828 0.0007 (2/2981) 0 * Os_TE_667021 Os_TE_666998 Chr11 11107256 11107257 - MPING 430 0.0007 (2/2972) 0 * Os_TE_666997 Os_TE_666997 Chr11 11107254 11107253 + MPING 430 0.0007 (2/2981) 0 * Os_TE_666998 Os_TE_666990 Chr11 11106238 11106239 - SZ-67LTR 1540 0.0021 (6/2915) -1 * Os_TE_666989 Os_TE_666989 Chr11 11106234 11106233 + SZ-67LTR 1540 0.0017 (5/2893) -1 * Os_TE_666990 Os_TE_666987 Chr11 11105765 11105766 - COPIA2-LTR_OS 6433 0.0003 (1/2970) 0 * * Os_TE_666985 Chr11 11103430 11103431 - ORSgTETN00200001 10994 0.0179 (53/2954) 0 * Os_TE_666984 Os_TE_666984 Chr11 11103428 11103427 + SPMLIKE 10989 0.0176 (52/2951) 0 * Os_TE_666985 Os_TE_666983 Chr11 11103421 11103422 + AMYLTP 383 0.0017 (5/2957) 0 * Os_TE_666982 Os_TE_666982 Chr11 11103413 11103412 - AMYLTP 383 0.0017 (5/2907) 0 * Os_TE_666983 Os_TE_666976 Chr11 11100951 11100952 + ORSiTERTOOT00174 2237 0.0017 (5/2905) 0 * * Os_TE_666975 Chr11 11100391 11100392 - RIREX_LTR 8828 0.0007 (2/2981) 0 * Os_TE_666974 Os_TE_666974 Chr11 11100387 11100386 + RIREX_LTR 8828 0.0007 (2/2986) 0 * Os_TE_666975 Os_TE_666967 Chr11 11097579 11097580 - ENSPM4_OS 11610 0.0193 (57/2949) 0 * * Os_TE_666928 Chr11 11081161 11081162 - AMYLTP 383 0.0017 (5/2967) 0 * Os_TE_666927 Os_TE_666927 Chr11 11081153 11081152 + AMYLTP 383 0.0017 (5/2964) 0 * Os_TE_666928 Os_TE_666926 Chr11 11080303 11080302 + EnSpm-N1_OS 4256 0.0013 (4/2963) 0 * Os_TE_666925 Os_TE_666925 Chr11 11080299 11080300 - EnSpm-N1_OS 4256 0.0017 (5/2955) 0 * Os_TE_666926 Os_TE_666886 Chr11 11067578 11067579 + COPI2_LTR 4733 0.3411 (559/1639) 0 * Os_TE_666885 Os_TE_666885 Chr11 11067574 11067573 - COPI2_LTR 4733 0.6519 (1944/2982) 0 * Os_TE_666886 Os_TE_666884 Chr11 11067333 11067334 - RIRE3_LTR 12054 0.0010 (1/1043) 0 * * Os_TE_666874 Chr11 11062792 11062793 + RETROSAT2LTR 12796 0.0003 (1/2996) 0 * Os_TE_666873 Os_TE_666873 Chr11 11062790 11062789 - RETROSAT2LTR 12796 0.0003 (1/2994) 0 * Os_TE_666874 Os_TE_666838 Chr11 11050290 11050289 + COPI2_LTR 4733 0.0003 (1/2960) 0 * * Os_TE_666806 Chr11 11041307 11041306 - RETROSAT2LTR 12796 0.6544 (1956/2989) 0 * Os_TE_666805 Os_TE_666805 Chr11 11041304 11041305 - TRUNCATOR 2918 0.6632 (1786/2693) 0 * Os_TE_666806 Os_TE_666793 Chr11 11038425 11038426 - CRM-LTR_OS 7749 0.0025 (7/2827) 0 * * Os_TE_666791 Chr11 11037542 11037543 + RETROSAT2LTR 12796 0.2220 (93/419) 0 * * Os_TE_666772 Chr11 11033109 11033110 + MPING 430 0.0145 (43/2970) 0 * Os_TE_666771 Os_TE_666771 Chr11 11033107 11033106 - MPING 430 0.0145 (43/2964) 0 * Os_TE_666772 Os_TE_666743 Chr11 11021313 11021312 + ORSiTERTOOT00174 2237 0.0007 (2/2976) 0 * * Os_TE_666742 Chr11 11020662 11020663 + ORSgTEMT00900024 245 0.0003 (1/2934) 0 * * Os_TE_666738 Chr11 11019101 11019102 - SC-8_LTR 4951 0.0003 (1/2948) 0 * Os_TE_666737 Os_TE_666737 Chr11 11019097 11019096 + SC-8_LTR 4951 0.0003 (1/2958) 0 * Os_TE_666738 Os_TE_666736 Chr11 11019045 11019044 - TNR3 1536 0.0003 (1/2971) 0 * * Os_TE_666711 Chr11 11000125 11000126 - COPIA2-LTR_OS 6433 0.0003 (1/2978) 0 * Os_TE_666710 Os_TE_666710 Chr11 11000121 11000120 + COPIA2-LTR_OS 6433 0.0003 (1/2983) 0 * Os_TE_666711 Os_TE_666707 Chr11 10998507 10998508 - ORSgTETN00200001 10994 0.0013 (4/2998) 0 * Os_TE_666706 Os_TE_666706 Chr11 10998505 10998504 + SPMLIKE 10989 0.0017 (5/2999) 0 * Os_TE_666707 Os_TE_666687 Chr11 10990662 10990663 + ENSPM6_OS 9815 0.0023 (7/2992) 0 * Os_TE_666686 Os_TE_666686 Chr11 10990660 10990659 - ENSPM6_OS 9815 0.0027 (8/2992) 0 * Os_TE_666687 Os_TE_666672 Chr11 10980760 10980761 - SC-8_LTR 4951 0.0003 (1/2947) 0 * Os_TE_666671 Os_TE_666671 Chr11 10980756 10980755 + SC-8_LTR 4951 0.0003 (1/2959) 0 * Os_TE_666672 Os_TE_666669 Chr11 10980513 10980514 + RPO_OS 1983 0.0017 (5/2943) 0 * * Os_TE_666662 Chr11 10975125 10975126 - CACTA-M 1129 0.0010 (3/2989) 0 * Os_TE_666661 Os_TE_666661 Chr11 10975123 10975122 + CACTA-M 1129 0.0010 (3/2987) 0 * Os_TE_666662 Os_TE_666624 Chr11 10954155 10954154 - TRUNCATOR 2918 0.4013 (1187/2958) 0 * Os_TE_666623 Os_TE_666623 Chr11 10954154 10954155 + TRUNCATOR 2918 0.4115 (1226/2979) 0 * Os_TE_666624 Os_TE_666612 Chr11 10951379 10951378 + TRUNCATOR 2918 0.0647 (194/2997) 0 * Os_TE_666611 Os_TE_666611 Chr11 10951378 10951379 - TRUNCATOR 2918 0.0620 (185/2983) 0 * Os_TE_666612 Os_TE_666588 Chr11 10945423 10945424 + TRUNCATOR 2918 0.0034 (10/2979) 0 * * Os_TE_666586 Chr11 10944521 10944522 - SZ-22_LTR 4403 0.0988 (296/2997) 0 * * Os_TE_666564 Chr11 10939675 10939676 - ORSgTETN00200001 10994 0.0007 (2/2948) 0 * Os_TE_666563 Os_TE_666563 Chr11 10939673 10939672 + SPMLIKE 10989 0.0007 (2/2954) 0 * Os_TE_666564 Os_TE_666561 Chr11 10939615 10939614 + SPMLIKE 10989 0.0003 (1/2930) 0 * * Os_TE_666553 Chr11 10933468 10933467 + GYPSY-A_LTR 8951 0.0005 (1/1825) 0 * * Os_TE_666548 Chr11 10932306 10932307 - MPING 430 0.0003 (1/2977) 0 * Os_TE_666547 Os_TE_666547 Chr11 10932304 10932303 + MPING 430 0.0003 (1/2982) 0 * Os_TE_666548 Os_TE_666540 Chr11 10928798 10928797 - TYPEM 227 0.0259 (77/2977) 0 * * Os_TE_666516 Chr11 10919983 10919984 - ENSPM4_OS 11610 0.0023 (7/2982) 0 * * Os_TE_666508 Chr11 10911534 10911535 - SZ-50_LTR 11691 0.0003 (1/2943) 0 * * Os_TE_666441 Chr11 10890216 10890217 - SC-8_LTR 4951 0.0013 (4/2970) 0 * Os_TE_666440 Os_TE_666440 Chr11 10890212 10890211 + ORSiTERTOOT00381 4988 0.0013 (4/2976) 0 * Os_TE_666441 Os_TE_666434 Chr11 10888439 10888438 - GAIJIN 147 0.0004 (1/2659) 0 * * Os_TE_666411 Chr11 10879312 10879313 + RETROSAT2LTRA 3112 0.0057 (17/2994) 0 * Os_TE_666410 Os_TE_666410 Chr11 10879308 10879307 - RETROSAT3_LTR 11537 0.0053 (16/2992) 0 * Os_TE_666411 Os_TE_666391 Chr11 10871254 10871255 - COPIA2-LTR_OS 6433 0.0010 (3/2997) 0 * Os_TE_666390 Os_TE_666390 Chr11 10871250 10871249 + COPIA2-LTR_OS 6433 0.0010 (3/2997) 0 * Os_TE_666391 Os_TE_666382 Chr11 10869591 10869592 - RIREX_LTR 8828 0.0007 (2/2995) 0 * Os_TE_666381 Os_TE_666381 Chr11 10869587 10869586 + RIREX_LTR 8828 0.0003 (1/2996) 0 * Os_TE_666382 Os_TE_666378 Chr11 10867678 10867679 + ORSiTERTOOT00097 759 0.0003 (1/2997) 0 * * Os_TE_666361 Chr11 10862995 10862994 + AMYLTP 383 0.0010 (3/2883) 0 * * Os_TE_666348 Chr11 10860819 10861164 + NDNA2TNA_OS 346 0.8863 (2626/2963) 1 Intact * Os_TE_666345 Chr11 10860162 10860161 + RETROSAT2LTR 12796 0.1784 (519/2909) 0 * * Os_TE_666334 Chr11 10857005 10857004 + RETROSAT2LTR 12796 0.0010 (3/2957) 0 * * Os_TE_666269 Chr11 10833232 10833233 + MPING 430 0.0003 (1/2970) 0 * Os_TE_666268 Os_TE_666268 Chr11 10833230 10833229 - MPING 430 0.0003 (1/2974) 0 * Os_TE_666269 Os_TE_666251 Chr11 10831850 10831851 - MERMITEJ 1498 0.0003 (1/2969) 0 * Os_TE_666250 Os_TE_666250 Chr11 10831845 10831844 + MERMITED 1572 0.0003 (1/2968) 0 * Os_TE_666251 Os_TE_666236 Chr11 10822725 10819499 - TRUNCATOR2_LTR 2904 0.3388 (1010/2981) 1 Intact Os_TE_666231 Os_TE_666231 Chr11 10819499 10822725 + ORSiTERTOOT00028 8600 0.3311 (984/2972) 1 Intact Os_TE_666236 Os_TE_666225 Chr11 10816828 10816829 - TRUNCATOR 2918 0.3434 (1013/2950) 0 * * Os_TE_666191 Chr11 10810311 10798969 + SPMLIKE 10989 0.3349 (992/2962) 1 Intact Os_TE_666188 Os_TE_666188 Chr11 10798969 10810312 - ORSgTETN00200001 10994 0.3206 (933/2910) 1 Intact Os_TE_666191 Os_TE_666174 Chr11 10796989 10796990 + ORSgTEMT04500003 289 0.0003 (1/2943) 0 * * Os_TE_666147 Chr11 10791955 10791956 - ORSgTEMT00700002 381 0.0003 (1/2962) 0 * * Os_TE_666145 Chr11 10789468 10789469 + SC-8_LTR 4951 0.0010 (3/2977) 0 * Os_TE_666144 Os_TE_666144 Chr11 10789464 10789463 - SC-8_LTR 4951 0.0010 (3/2983) 0 * Os_TE_666145 Os_TE_666135 Chr11 10779759 10779760 - MPING 430 0.0003 (1/2984) 0 * Os_TE_666134 Os_TE_666134 Chr11 10779757 10779756 + MPING 430 0.0003 (1/2980) 0 * Os_TE_666135 Os_TE_666133 Chr11 10779054 10779055 - SC-3_LTR 5748 0.0007 (2/2983) 0 * Os_TE_666132 Os_TE_666132 Chr11 10779050 10779049 + ORSiTERTOOT00296 5553 0.0003 (1/2985) 0 * Os_TE_666133 Os_TE_666128 Chr11 10776967 10776968 + ORSiTERTOOT00296 5553 0.0070 (21/2994) 0 * Os_TE_666127 Os_TE_666127 Chr11 10776963 10776962 - SC-3_LTR 5748 0.0070 (21/2987) 0 * Os_TE_666128 Os_TE_666112 Chr11 10771851 10771852 - SC-8_LTR 4951 0.0003 (1/2923) 0 * Os_TE_666111 Os_TE_666111 Chr11 10771847 10771846 + SC-8_LTR 4951 0.0003 (1/2938) 0 * Os_TE_666112 Os_TE_666110 Chr11 10771834 10771835 - ORSgTEMT00900892 250 0.0003 (1/2933) 0 * * Os_TE_666109 Chr11 10771138 10771137 + ORSgTETNOOT00908 242 0.0013 (4/2993) 0 * * Os_TE_666099 Chr11 10768803 10768804 - AMYLTP 383 0.0007 (2/2886) 0 * Os_TE_666098 Os_TE_666098 Chr11 10768795 10768794 + AMYLTP 383 0.0007 (2/2888) 0 * Os_TE_666099 Os_TE_666083 Chr11 10767452 10767453 + RIRE2_LTR 11306 0.1350 (399/2955) 0 * * Os_TE_666075 Chr11 10766981 10766980 + RIREX_LTR 8828 0.0022 (6/2734) 0 * * Os_TE_666068 Chr11 10764698 10764699 - RETRO2A_LTR 12895 0.0020 (6/2981) 0 * * Os_TE_666031 Chr11 10750851 10750850 + CRATA 4786 0.6703 (1980/2954) 0 * Os_TE_666030 Os_TE_666030 Chr11 10750849 10750850 - CRATA 4786 0.6671 (1950/2923) 0 * Os_TE_666031 Os_TE_666027 Chr11 10749829 10749828 - RETROSAT2LTRA 3112 0.0027 (8/2984) 0 * * Os_TE_666015 Chr11 10744675 10744676 - SC-3_LTR 5748 0.0352 (103/2922) 0 * * Os_TE_665992 Chr11 10737952 10737953 - SZ-22_LTR 4403 0.0003 (1/2955) 0 * * Os_TE_665970 Chr11 10730564 10730565 + ORSgTEMT00502544 146 0.0003 (1/2948) 0 * * Os_TE_665969 Chr11 10730478 10730479 + NDNA1TNA_OS 334 0.0020 (6/2967) 0 * Os_TE_665968 Os_TE_665968 Chr11 10730476 10730475 - NDNA1TNA_OS 334 0.0027 (8/2964) 0 * Os_TE_665969 Os_TE_665953 Chr11 10726482 10726481 - ORSiTERTOOT00274 4749 0.0003 (1/2981) 0 * * Os_TE_665927 Chr11 10712413 10711448 - SZ-9LTR 965 0.3067 (914/2980) 1 Intact Os_TE_665926 Os_TE_665926 Chr11 10711448 10712413 + SZ-9LTR 965 0.3039 (903/2971) 1 Intact Os_TE_665927 Os_TE_665925 Chr11 10711311 10711312 - ORSgTETN00200001 10994 0.0217 (64/2955) 0 * * Os_TE_665917 Chr11 10710030 10710029 + ENSPM4_OS 11610 0.0038 (11/2902) 0 * * Os_TE_665883 Chr11 10696876 10696877 + ORSiTERTOOT00296 5553 0.0003 (1/2962) 0 * Os_TE_665882 Os_TE_665882 Chr11 10696872 10696871 - SC-3_LTR 5748 0.0003 (1/2963) 0 * Os_TE_665883 Os_TE_665868 Chr11 10688369 10688368 + TRUNCATOR 2918 0.0243 (73/2998) 0 * Os_TE_665867 Os_TE_665867 Chr11 10688368 10688369 - TRUNCATOR 2918 0.0237 (71/2999) 0 * Os_TE_665868 Os_TE_665863 Chr11 10686873 10686872 + RIRE3A_LTR 10580 0.0224 (67/2990) 0 * * Os_TE_665859 Chr11 10685054 10685055 - TRUNCATOR2_LTR 2904 0.2671 (718/2688) -1 * Os_TE_665858 Os_TE_665858 Chr11 10685050 10685049 + ORSiCMCM00100019 2717 0.1367 (300/2194) -1 * Os_TE_665859 Os_TE_665699 Chr11 10633080 10633081 - COPI2_LTR 4733 0.0003 (1/2946) 0 * Os_TE_665698 Os_TE_665698 Chr11 10633076 10633075 + COPI2_LTR 4733 0.0003 (1/2971) 0 * Os_TE_665699 Os_TE_665687 Chr11 10626844 10626843 + ORSgTEMT00700017 386 0.0007 (2/2956) 0 * * Os_TE_665683 Chr11 10624779 10624780 + GYPSY-A_LTR 8951 0.0024 (7/2968) 0 * Os_TE_665682 Os_TE_665682 Chr11 10624775 10624774 - SZ-40LTR 2465 0.0023 (7/2988) 0 * Os_TE_665683 Os_TE_665661 Chr11 10613197 10613198 + COPIA2-LTR_OS 6433 0.0007 (2/2996) 0 * Os_TE_665660 Os_TE_665660 Chr11 10613193 10613192 - COPIA2-LTR_OS 6433 0.0007 (2/2996) 0 * Os_TE_665661 Os_TE_665655 Chr11 10609351 10609352 - COPI1_LTR 4721 0.0014 (4/2823) 0 * Os_TE_665654 Os_TE_665654 Chr11 10609347 10609346 + COPI1_LTR 4721 0.0025 (7/2778) 0 * Os_TE_665655 Os_TE_665638 Chr11 10604417 10604418 + ORSiTERTOOT00226 792 0.0003 (1/2991) 0 * * Os_TE_665635 Chr11 10602221 10602222 + RIRE3_LTR 12054 0.0201 (60/2982) 0 * * Os_TE_665629 Chr11 10600449 10600448 + TRUNCATOR2_LTR 2904 0.2565 (760/2963) 0 * * Os_TE_665585 Chr11 10575667 10575668 - RIREX_LTR 8828 0.0003 (1/2975) 0 * * Os_TE_665559 Chr11 10566788 10566787 + ORSgTEMT01601018 231 0.0004 (1/2565) 0 * * Os_TE_665552 Chr11 10564718 10564717 + COPI2_LTR 4733 0.0004 (1/2831) 0 * * Os_TE_665522 Chr11 10560051 10560052 - SZ-22_LTR 4403 0.0003 (1/2863) 0 * * Os_TE_665519 Chr11 10558409 10558410 - RETRO2_LTR 12874 0.0010 (3/2922) 0 * Os_TE_665518 Os_TE_665518 Chr11 10558405 10558404 + ORSgTERTOOT00009 12852 0.0010 (3/2925) 0 * Os_TE_665519 Os_TE_665511 Chr11 10553132 10553133 + TRUNCATOR 2918 0.0014 (4/2920) 0 * * Os_TE_665465 Chr11 10530438 10530439 + TNR3 1536 0.0026 (3/1151) 0 * * Os_TE_665423 Chr11 10518272 10518271 - ORSgTETN00200001 10994 0.0926 (108/1166) 0 * * Os_TE_665375 Chr11 10480932 10480931 + ORSiTERTOOT00034 791 0.0005 (1/1914) 0 * * Os_TE_665290 Chr11 10442630 10442629 - ENSPM4_OS 11610 0.0024 (7/2899) 0 * * Os_TE_665230 Chr11 10425947 10425946 + ORSiTERTOOT00027 10853 0.0007 (2/2909) 0 * * Os_TE_665198 Chr11 10415899 10415898 + TRUNCATOR 2918 0.0058 (17/2910) 0 * * Os_TE_665092 Chr11 10388278 10385139 + RIRE3_LTR 12054 0.3049 (886/2906) 1 Solo_LTR Os_TE_665083 Os_TE_665083 Chr11 10385139 10388278 - RIRE3_LTR 12054 0.3099 (903/2914) 1 Solo_LTR Os_TE_665092 Os_TE_665080 Chr11 10383826 10383827 - RIRE3_LTR 12054 0.0021 (6/2909) 0 * Os_TE_665079 Os_TE_665079 Chr11 10383822 10383821 + RIRE3_LTR 12054 0.0021 (6/2908) 0 * Os_TE_665080 Os_TE_665065 Chr11 10372511 10372510 + ENSPM4_OS 11610 0.0018 (5/2833) 0 * * Os_TE_665063 Chr11 10371295 10371294 + ORSgTEMT00901844 250 0.0007 (2/2757) 0 * * Os_TE_664988 Chr11 10342712 10342713 + MPING 430 0.0017 (5/2920) 0 * * Os_TE_664974 Chr11 10330208 10330207 + ORSgTEMT01701591 154 0.0252 (75/2976) 0 * * Os_TE_664944 Chr11 10312368 10312369 - TRUNCATOR2_LTR 2904 0.0004 (1/2775) 0 * Os_TE_664943 Os_TE_664943 Chr11 10312364 10312363 + ORSiTERTOOT00028 8600 0.0004 (1/2776) 0 * Os_TE_664944 Os_TE_664866 Chr11 10275882 10275881 - RIRE3_LTR 12054 0.0007 (2/2763) 0 * * Os_TE_664865 Chr11 10275759 10275760 - ORSgTETN00200001 10994 0.2055 (541/2633) 0 * * Os_TE_664848 Chr11 10271575 10271576 + TRUNCATOR 2918 0.0273 (76/2779) 0 * * Os_TE_664844 Chr11 10268968 10268969 - RIREX_LTR 8828 0.0174 (48/2766) 0 * Os_TE_664843 Os_TE_664843 Chr11 10268964 10268963 + RIREX_LTR 8828 0.0174 (48/2759) 0 * Os_TE_664844 Os_TE_664825 Chr11 10267900 10267901 - ORSiTERT00200154 9386 0.0166 (46/2776) 0 * Os_TE_664824 Os_TE_664824 Chr11 10267894 10267893 + TRUNCATOR 2918 0.0162 (45/2778) 0 * Os_TE_664825 Os_TE_664822 Chr11 10267318 10267317 - TRUNCATOR 2918 0.0018 (5/2783) 0 * Os_TE_664821 Os_TE_664821 Chr11 10267317 10267318 + TRUNCATOR 2918 0.0025 (7/2772) 0 * Os_TE_664822 Os_TE_664820 Chr11 10266760 10266759 + SEVERIN-2 1952 0.0023 (6/2665) 0 * * Os_TE_664819 Chr11 10266692 10266693 - RETRO1_LTR 8314 0.0004 (1/2720) 0 * Os_TE_664818 Os_TE_664818 Chr11 10266688 10266687 + RETRO2A_LTR 12895 0.0004 (1/2732) 0 * Os_TE_664819 Os_TE_664809 Chr11 10264301 10264302 + MPING 430 0.0013 (4/2974) 0 * Os_TE_664808 Os_TE_664808 Chr11 10264299 10264298 - MPING 430 0.0013 (4/2969) 0 * Os_TE_664809 Os_TE_664779 Chr11 10255006 10255007 - TRSA_OS 353 0.0003 (1/2969) 0 * * Os_TE_664778 Chr11 10254659 10254658 + TRUNCATOR 2918 0.2513 (749/2981) 0 * * Os_TE_664776 Chr11 10251126 10251125 + TRUNCATOR 2918 0.0048 (14/2892) 0 * * Os_TE_664769 Chr11 10246029 10246030 + COPI2_LTR 4733 0.0003 (1/2974) 0 * * Os_TE_664765 Chr11 10244631 10244630 - JOUZHENA 607 0.4217 (1246/2955) 0 * Os_TE_664764 Os_TE_664764 Chr11 10244618 10244619 + JOUZHENA 607 0.4119 (1204/2923) 0 * Os_TE_664765 Os_TE_664762 Chr11 10244462 10244085 - ORSgTEMT00300122 416 0.7243 (2107/2909) 1 Intact * Os_TE_664750 Chr11 10238604 10238603 - AMYLTP 383 0.0024 (7/2947) 0 * * Os_TE_664742 Chr11 10235466 10235465 + RIRE5-LTR_OS 6427 0.0021 (6/2818) 0 * * Os_TE_664741 Chr11 10235461 10235462 + TNR2A 152 0.0005 (1/1970) 0 * * Os_TE_664739 Chr11 10235128 10235129 - COPIA2-LTR_OS 6433 0.0041 (12/2930) 0 * Os_TE_664738 Os_TE_664738 Chr11 10235124 10235123 + COPIA2-LTR_OS 6433 0.0020 (6/2940) 0 * Os_TE_664739 Os_TE_664683 Chr11 10215561 10209101 + COPIA2-LTR_OS 6433 0.0534 (159/2980) 1 Intact Os_TE_664681 Os_TE_664681 Chr11 10209101 10215561 - COPIA2-LTR_OS 6433 0.0556 (166/2985) 1 Intact Os_TE_664683 Os_TE_664680 Chr11 10207855 10207856 - COPI2_LTR 4733 0.0003 (1/2973) 0 * Os_TE_664679 Os_TE_664679 Chr11 10207851 10207850 + COPI2_LTR 4733 0.0003 (1/2975) 0 * Os_TE_664680 Os_TE_664672 Chr11 10204984 10204985 - TRUNCATOR 2918 0.0020 (6/2984) 0 * * Os_TE_664631 Chr11 10173661 10173662 - MPING 430 0.0003 (1/2967) 0 * Os_TE_664630 Os_TE_664630 Chr11 10173659 10173658 + MPING 430 0.0003 (1/2969) 0 * Os_TE_664631 Os_TE_664627 Chr11 10169372 10169371 + TRUNCATOR 2918 0.3528 (627/1777) 0 * * Os_TE_664577 Chr11 10155948 10155949 - RIRE3_LTR 12054 0.4259 (1245/2923) 0 * Os_TE_664576 Os_TE_664576 Chr11 10155944 10155943 + RIRE3_LTR 12054 0.4419 (1320/2987) 0 * Os_TE_664577 Os_TE_664575 Chr11 10155707 10155708 + RIRE3_LTR 12054 0.0017 (5/2925) 0 * Os_TE_664574 Os_TE_664574 Chr11 10155703 10155702 - RIRE3_LTR 12054 0.0017 (5/2963) 0 * Os_TE_664575 Os_TE_664566 Chr11 10150513 10150512 + COPIA2-LTR_OS 6433 0.0040 (9/2223) 0 * * Os_TE_664547 Chr11 10143804 10143805 - ORSgTEMT01601525 239 0.0247 (74/2995) 0 * * Os_TE_664541 Chr11 10139536 10135505 + COPIA2-LTR_OS 6433 0.3069 (919/2994) 1 Intact Os_TE_664538 Os_TE_664538 Chr11 10135505 10139536 - COPIA2-LTR_OS 6433 0.3003 (888/2957) 1 Intact Os_TE_664541 Os_TE_664502 Chr11 10124457 10120894 + GYPSY-A_LTR 8951 0.3021 (899/2976) 1 Solo_LTR Os_TE_664498 Os_TE_664498 Chr11 10120894 10124457 - SZ-40LTR 2465 0.3082 (922/2992) 1 Intact Os_TE_664502 Os_TE_664491 Chr11 10118544 10118545 - COPI2_LTR 4733 0.0003 (1/2931) 0 * Os_TE_664490 Os_TE_664490 Chr11 10118540 10118539 + COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_664491 Os_TE_664485 Chr11 10116441 10116442 + TRUNCATOR 2918 0.0013 (4/2998) 0 * * Os_TE_664460 Chr11 10103886 10103887 + RIREX_LTR 8828 0.3054 (914/2993) 0 * Os_TE_664459 Os_TE_664459 Chr11 10103882 10103881 - RIREX_LTR 8828 0.3042 (896/2945) 0 * Os_TE_664460 Os_TE_664453 Chr11 10101635 10101636 - SEVERIN-2 1952 0.0003 (1/2942) 0 * * Os_TE_664451 Chr11 10101323 10101322 - COPIA2-LTR_OS 6433 0.0003 (1/2902) -1 * * Os_TE_664430 Chr11 10094113 10094114 + ORSiTERTOOT00074 4935 0.0004 (1/2804) 0 * * Os_TE_664410 Chr11 10085843 10085844 - ORSgTERT00201216 11284 0.0110 (32/2909) 0 * Os_TE_664409 Os_TE_664409 Chr11 10085839 10085838 - RIRE2_LTR 11306 0.0117 (34/2911) 0 * Os_TE_664410 Os_TE_664407 Chr11 10085347 10085348 - Cassandra_OS-LTR 764 0.0521 (150/2881) 0 * Os_TE_664406 Os_TE_664406 Chr11 10085343 10085342 + Cassandra_OS-LTR 764 0.0527 (151/2864) 0 * Os_TE_664407 Os_TE_664405 Chr11 10083698 10083699 - CRM-LTR_OS 7749 0.0003 (1/2927) 0 * * Os_TE_664404 Chr11 10081267 10081268 + SZ-9LTR 965 0.0003 (1/2964) 0 * Os_TE_664403 Os_TE_664403 Chr11 10081263 10081262 - SZ-9LTR 965 0.0003 (1/2964) 0 * Os_TE_664404 Os_TE_664397 Chr11 10078307 10078990 - OSTE24 683 0.8994 (1171/1302) -1 Intact * Os_TE_664379 Chr11 10073556 10073555 + GYPSY-A_LTR 8951 0.0027 (8/2995) 0 * * Os_TE_664377 Chr11 10073250 10073249 - COPIA2-LTR_OS 6433 0.0003 (1/2955) 0 * * Os_TE_664372 Chr11 10069751 10069752 + RIREX_LTR 8828 0.0007 (2/2997) 0 * Os_TE_664371 Os_TE_664371 Chr11 10069747 10069746 - RIRE2_LTR 11306 0.0007 (2/2997) 0 * Os_TE_664372 Os_TE_664368 Chr11 10066218 10066217 + NDNA1TNA_OS 334 0.0003 (1/2988) 0 * * Os_TE_664367 Chr11 10066207 10065961 - ORSgTEMT00901723 248 0.3355 (1002/2987) 1 Intact Os_TE_664365 Os_TE_664365 Chr11 10065958 10066205 + ORSgTEMT00900533 246 0.3344 (1001/2993) 1 Intact Os_TE_664367 Os_TE_664350 Chr11 10061876 10061877 - SZ-22_LTR 4403 0.0010 (3/2933) 0 * Os_TE_664349 Os_TE_664349 Chr11 10061872 10061871 + ORSiTERTOOT00034 791 0.0014 (4/2938) 0 * Os_TE_664350 Os_TE_664339 Chr11 10056912 10056913 - ORSgTETN00200001 10994 0.2961 (812/2742) -1 * Os_TE_664338 Os_TE_664338 Chr11 10056910 10056909 + SPMLIKE 10989 0.3161 (895/2831) -1 * Os_TE_664339 Os_TE_664336 Chr11 10055870 10055871 + ENSPM6_OS 9815 0.5322 (1332/2503) 0 * * Os_TE_664335 Chr11 10054856 10054855 + CASBIG 811 0.5639 (1544/2738) 0 * * Os_TE_664325 Chr11 10051510 10051511 + ORSgTEMT01601591 242 0.0011 (3/2838) 0 * * Os_TE_664323 Chr11 10050774 10050775 - JOUZHENA 607 0.2195 (347/1581) 0 * * Os_TE_664317 Chr11 10048638 10048637 + ORSgTEMT01602669 216 0.0260 (32/1233) 0 * * Os_TE_664316 Chr11 10048610 10048611 + TEMPINDAS 4259 0.2043 (593/2902) 0 * * Os_TE_664315 Chr11 10047529 10047528 - SINE9_OS 293 0.1042 (128/1228) 0 * * Os_TE_664312 Chr11 10046284 10046283 + ORSgTEMT01702268 154 0.6003 (1786/2975) 0 * Os_TE_664311 Os_TE_664311 Chr11 10046281 10046282 - ORSgTEMT01700051 137 0.5619 (1544/2748) 0 * Os_TE_664312 Os_TE_664310 Chr11 10046181 10046182 + EnSpm-15_OS 8871 0.5942 (1750/2945) 0 * Os_TE_664309 Os_TE_664309 Chr11 10046179 10046178 - EnSpm-15_OS 8871 0.6002 (1788/2979) 0 * Os_TE_664310 Os_TE_664285 Chr11 10037878 10030384 - GYPSY1-LTR_OS 8900 0.8748 (1097/1254) 1 Intact Os_TE_664274 Os_TE_664274 Chr11 10030384 10037878 + GYPSY-B_LTR 7068 0.8734 (1083/1240) 1 Intact Os_TE_664285 Os_TE_664266 Chr11 10028963 10028962 - COPI2_LTR 4733 0.0008 (1/1205) 0 * * Os_TE_664265 Chr11 10028048 10027708 - ORSgTEMT01900023 299 0.8773 (1072/1222) 1 Intact Os_TE_664263 Os_TE_664263 Chr11 10027700 10028048 - ORSgTEMT01900024 348 0.8731 (1053/1206) 1 Intact Os_TE_664265 Os_TE_664233 Chr11 10012846 10012847 - TRUNCATOR2_LTR 2904 0.0110 (14/1278) 0 * * Os_TE_664215 Chr11 10008624 10008625 - ORSgTEMT01601208 238 0.1194 (144/1206) 0 * * Os_TE_664211 Chr11 10004822 10004823 - HATOS1 3488 0.0088 (11/1251) 0 * Os_TE_664210 Os_TE_664210 Chr11 10004815 10004814 + QINNIU 528 0.0088 (11/1244) 0 * Os_TE_664211 Os_TE_664206 Chr11 10002429 10002430 - SZ-62LTR 3649 0.0113 (14/1243) 0 * Os_TE_664205 Os_TE_664205 Chr11 10002425 10002424 + SZ-62LTR 3649 0.0113 (14/1244) 0 * Os_TE_664206 Os_TE_664204 Chr11 10002174 10002175 - RIREX_LTR 8828 0.0016 (2/1236) 0 * Os_TE_664203 Os_TE_664203 Chr11 10002114 10002113 + RIREX_LTR 8828 0.0016 (2/1232) 0 * Os_TE_664204 Os_TE_664202 Chr11 10001928 10001927 + ORSgTETNOOT00908 242 0.0114 (14/1231) 0 * * Os_TE_664198 Chr11 9998228 9986221 + TNR2A 152 0.5056 (1225/2423) 1 Intact Os_TE_664174 Os_TE_664174 Chr11 9986220 9998227 + TNR2A 152 0.4946 (1154/2333) 1 Intact Os_TE_664198 Os_TE_664150 Chr11 9970310 9970309 + SPMLIKE 10989 0.0127 (29/2291) 0 * * Os_TE_664135 Chr11 9964690 9964689 + ORSgTEMT00501601 153 0.6584 (1858/2822) 0 * Os_TE_664134 Os_TE_664134 Chr11 9964689 9964690 + ORSgTETNOOT01930 140 0.6604 (1867/2827) 0 * Os_TE_664135 Os_TE_664128 Chr11 9961426 9961425 - RETROSAT5_LTR 13878 0.0005 (1/2218) 0 * * Os_TE_664127 Chr11 9961154 9961155 - ORSiTERTOOT00385 6000 0.6695 (1870/2793) 0 * * Os_TE_664090 Chr11 9936362 9936363 + TWIFB1 3737 0.0095 (27/2838) 0 * Os_TE_664089 Os_TE_664089 Chr11 9936355 9936354 - TWIFB1 3737 0.0095 (27/2852) 0 * Os_TE_664090 Os_TE_664085 Chr11 9933693 9933692 - ORSgTEMT01600152 226 0.6554 (1839/2806) 0 * Os_TE_664084 Os_TE_664084 Chr11 9933690 9933691 - ORSgTEMT01601834 234 0.6673 (1905/2855) 0 * Os_TE_664085 Os_TE_664081 Chr11 9931805 9931806 - SZ-14LTR 1193 0.6637 (1879/2831) 0 * * Os_TE_664070 Chr11 9927019 9926781 - ORSgTEMT01601208 238 0.4171 (986/2364) 1 Intact Os_TE_664069 Os_TE_664069 Chr11 9926781 9927019 - ORSgTEMT01600639 228 0.3363 (954/2837) 1 Intact Os_TE_664070 Os_TE_663923 Chr11 9864353 9864354 - SZ-35LTR 3853 0.1036 (118/1139) 0 * * Os_TE_663921 Chr11 9864301 9864300 + RIRE3_LTR 12054 0.0333 (38/1141) 0 * * Os_TE_663916 Chr11 9859456 9859457 - TRUNCATOR2_LTR 2904 0.0270 (80/2966) 0 * Os_TE_663915 Os_TE_663915 Chr11 9859452 9859451 + ORSiTERTOOT00028 8600 0.0254 (75/2948) 0 * Os_TE_663916 Os_TE_663888 Chr11 9852664 9852938 - STOWAWAY11_OS 292 0.7844 (993/1266) 1 Intact * Os_TE_663886 Chr11 9852077 9852076 + ORSgTEMT00500385 153 0.6307 (1887/2992) 0 * Os_TE_663885 Os_TE_663885 Chr11 9852075 9852076 + ORSgTEMT00502437 145 0.6301 (1884/2990) 0 * Os_TE_663886 Os_TE_663878 Chr11 9850742 9850741 + TRUNCATOR2_LTR 2904 0.0092 (27/2939) 0 * * Os_TE_663874 Chr11 9849765 9849764 + RETROSAT2LTR 12796 0.0003 (1/2987) 0 * * Os_TE_663870 Chr11 9847620 9847619 + SZ-9LTR 965 0.0053 (16/2993) 0 * * Os_TE_663865 Chr11 9846428 9846429 + SPMLIKE 10989 0.6035 (1758/2913) 0 * Os_TE_663864 Os_TE_663864 Chr11 9846426 9846425 - ORSgTETN00200001 10994 0.5836 (1633/2798) 0 * Os_TE_663865 Os_TE_663858 Chr11 9842017 9842018 + RIREX_LTR 8828 0.0017 (5/2881) 0 * Os_TE_663857 Os_TE_663857 Chr11 9842013 9842012 - RIREX_LTR 8828 0.0017 (5/2954) 0 * Os_TE_663858 Os_TE_663856 Chr11 9840939 9840787 - F804 170 0.7586 (1169/1541) 1 Intact * Os_TE_663848 Chr11 9838665 9838666 - RIREX_LTR 8828 0.0003 (1/2991) 0 * Os_TE_663847 Os_TE_663847 Chr11 9838661 9838660 + RIREX_LTR 8828 0.0003 (1/2991) 0 * Os_TE_663848 Os_TE_663802 Chr11 9814850 9811744 - RETROSAT3_LTR 11537 0.5229 (1564/2991) 1 Solo_LTR Os_TE_663795 Os_TE_663795 Chr11 9811744 9814850 + RETROSAT2LTRA 3112 0.5200 (1550/2981) 1 Intact Os_TE_663802 Os_TE_663794 Chr11 9810185 9810186 + ORSgTETNOOT00908 242 0.0003 (1/2967) 0 * * Os_TE_663793 Chr11 9808506 9808507 + ORSiTERTOOT00296 5553 0.0007 (2/2998) 0 * Os_TE_663792 Os_TE_663792 Chr11 9808502 9808501 - SC-3_LTR 5748 0.0007 (2/2997) 0 * Os_TE_663793 Os_TE_663788 Chr11 9806095 9806096 - SC-3_LTR 5748 0.0003 (1/2975) 0 * Os_TE_663787 Os_TE_663787 Chr11 9806091 9806090 + ORSiTERTOOT00296 5553 0.0003 (1/2975) 0 * Os_TE_663788 Os_TE_663784 Chr11 9803402 9803403 - SC-8_LTR 4951 0.0010 (3/2987) 0 * * Os_TE_663730 Chr11 9782307 9782306 + RIRE3_LTR 12054 0.0007 (2/2982) 0 * * Os_TE_663648 Chr11 9741311 9741312 + OLO24 345 0.0003 (1/2968) 0 * Os_TE_663647 Os_TE_663647 Chr11 9741309 9741308 - OLO24 345 0.0003 (1/2971) 0 * Os_TE_663648 Os_TE_663614 Chr11 9728696 9728695 + SZ-62LTR 3649 0.0337 (99/2935) 0 * * Os_TE_663612 Chr11 9727052 9727053 - COPIA2-LTR_OS 6433 0.0003 (1/2877) 0 * Os_TE_663611 Os_TE_663611 Chr11 9727048 9727047 + COPIA2-LTR_OS 6433 0.0003 (1/2895) 0 * Os_TE_663612 Os_TE_663610 Chr11 9726720 9726721 - TRUNCATOR 2918 0.0173 (32/1851) 0 * * Os_TE_663604 Chr11 9725767 9725768 - MPING 430 0.0010 (3/2983) 0 * Os_TE_663603 Os_TE_663603 Chr11 9725765 9725764 + MPING 430 0.0010 (3/2986) 0 * Os_TE_663604 Os_TE_663597 Chr11 9712565 9712566 + RIREX_LTR 8828 0.0010 (3/2929) 0 * * Os_TE_663564 Chr11 9701945 9701944 + ORSgTEMT01601591 242 0.0022 (6/2776) 0 * * Os_TE_663559 Chr11 9697135 9701876 - COPI2_LTR 4733 0.3160 (869/2750) 1 Intact * Os_TE_663531 Chr11 9688635 9688634 + EnSpm-10_OS 11265 0.0004 (1/2830) 0 * * Os_TE_663451 Chr11 9629937 9629936 + TRUNCATOR 2918 0.0008 (1/1308) 0 * * Os_TE_663449 Chr11 9627099 9627098 + SZ-43LTR 4039 0.1195 (92/770) 0 * * Os_TE_663402 Chr11 9595749 9595748 - TRUNCATOR 2918 0.0597 (176/2950) 0 * Os_TE_663401 Os_TE_663401 Chr11 9595748 9595749 + TRUNCATOR 2918 0.0691 (177/2561) 0 * Os_TE_663402 Os_TE_663391 Chr11 9591998 9591999 - COPI2_LTR 4733 0.0003 (1/2954) 0 * Os_TE_663390 Os_TE_663390 Chr11 9591994 9591993 + COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_663391 Os_TE_663379 Chr11 9586713 9580228 + COPIA2-LTR_OS 6433 0.2938 (866/2948) 1 Intact Os_TE_663373 Os_TE_663373 Chr11 9580228 9586673 - COPIA2-LTR_OS 6433 0.2952 (848/2873) 1 Intact Os_TE_663379 Os_TE_663351 Chr11 9572458 9572457 + TRUNCATOR 2918 0.0304 (85/2797) 0 * * Os_TE_663344 Chr11 9571197 9571198 - COPI2_LTR 4733 0.0003 (1/2962) 0 * Os_TE_663343 Os_TE_663343 Chr11 9571193 9571192 + COPI2_LTR 4733 0.0003 (1/2958) 0 * Os_TE_663344 Os_TE_663298 Chr11 9550349 9550350 - RIRE2_LTR 11306 0.0354 (102/2880) 0 * Os_TE_663297 Os_TE_663297 Chr11 9550345 9550344 + RIRE2_LTR 11306 0.0356 (102/2869) 0 * Os_TE_663298 Os_TE_663195 Chr11 9504099 9504100 - SZ-37_LTR 12001 0.0440 (42/955) 0 * * Os_TE_663180 Chr11 9495880 9495879 + RPO_OS 1983 0.0039 (5/1271) 0 * * Os_TE_663135 Chr11 9475067 9475068 - COPI1_LTR 4721 0.0003 (1/2928) 0 * * Os_TE_663122 Chr11 9469331 9469330 + HELITRON2_OS 15167 0.3073 (881/2867) 0 * Os_TE_663121 Os_TE_663121 Chr11 9469330 9469331 - HELITRON2_OS 15167 0.3201 (933/2915) 0 * Os_TE_663122 Os_TE_663111 Chr11 9465434 9465435 - NDNA2TNA_OS 346 0.0017 (5/2963) 0 * * Os_TE_663079 Chr11 9450576 9450577 + RIREX_LTR 8828 0.0003 (1/2940) 0 * Os_TE_663078 Os_TE_663078 Chr11 9450572 9450571 - RIRE2_LTR 11306 0.0003 (1/2946) 0 * Os_TE_663079 Os_TE_663075 Chr11 9448708 9448709 - ORSgTETN00200001 10994 0.0027 (8/2927) 0 * Os_TE_663074 Os_TE_663074 Chr11 9448706 9448705 + SPMLIKE 10989 0.0024 (7/2930) 0 * Os_TE_663075 Os_TE_663073 Chr11 9447842 9447843 - CACTA-H 1152 0.0014 (4/2934) 0 * Os_TE_663072 Os_TE_663072 Chr11 9447840 9447839 + CACTA-I 1124 0.0007 (2/2941) 0 * Os_TE_663073 Os_TE_663065 Chr11 9444756 9444757 - SZ-19LTR 1513 0.0014 (4/2821) 0 * Os_TE_663064 Os_TE_663064 Chr11 9444752 9444751 + ATLANTYS-LTR_OS 13740 0.0014 (4/2820) 0 * Os_TE_663065 Os_TE_663052 Chr11 9440141 9440140 - TRUNCATOR 2918 0.1267 (372/2935) 0 * * Os_TE_663043 Chr11 9437874 9437875 - SEVERIN-2 1952 0.0014 (4/2961) 0 * * Os_TE_663027 Chr11 9430434 9430433 - COPIA2-LTR_OS 6433 0.0003 (1/2956) 0 * * Os_TE_662989 Chr11 9418117 9418116 + ORSgTEMT01601599 239 0.0004 (1/2807) 0 * * Os_TE_662984 Chr11 9416202 9416203 - RETROSAT2LTR 12796 0.0017 (5/2918) 0 * * Os_TE_662911 Chr11 9388803 9388804 - TRUNCATOR2_LTR 2904 0.1954 (354/1812) 0 * * Os_TE_662906 Chr11 9385558 9385559 + SZ-35LTR 3853 0.0026 (5/1958) 0 * * Os_TE_662900 Chr11 9382671 9382670 - COPIA2-LTR_OS 6433 0.0005 (1/1960) 0 * * Os_TE_662868 Chr11 9377467 9377468 + RIRE3A_LTR 10580 0.0007 (2/2965) 0 * Os_TE_662867 Os_TE_662867 Chr11 9377463 9377462 - RIRE3A_LTR 10580 0.0007 (2/2965) 0 * Os_TE_662868 Os_TE_662846 Chr11 9368710 9368711 - SZ-22_LTR 4403 0.0017 (5/2900) 0 * * Os_TE_662782 Chr11 9334123 9334124 - RIREX_LTR 8828 0.0003 (1/2982) 0 * * Os_TE_662779 Chr11 9333494 9333495 - COPI2_LTR 4733 0.0124 (37/2973) 0 * * Os_TE_662773 Chr11 9332636 9332635 + RIREX_LTR 8828 0.0010 (3/2995) 0 * * Os_TE_662769 Chr11 9329532 9329533 + SPMLIKE 10989 0.0271 (81/2994) 0 * Os_TE_662768 Os_TE_662768 Chr11 9329530 9329529 - ORSgTETN00200001 10994 0.0260 (78/2995) 0 * Os_TE_662769 Os_TE_662765 Chr11 9328849 9328850 - COPIA2-LTR_OS 6433 0.0017 (5/2954) 0 * * Os_TE_662763 Chr11 9328815 9328816 - ORSgTETN00200001 10994 0.1063 (314/2953) 0 * * Os_TE_662761 Chr11 9328751 9327471 + CACTA-B 1103 0.3713 (1092/2941) 1 Intact * Os_TE_662754 Chr11 9325830 9325831 + COPIA2-LTR_OS 6433 0.0020 (6/2991) 0 * Os_TE_662753 Os_TE_662753 Chr11 9325826 9325825 - COPIA2-LTR_OS 6433 0.0023 (7/2992) 0 * Os_TE_662754 Os_TE_662745 Chr11 9323753 9323754 + SPMLIKE 10989 0.0107 (32/2978) 0 * Os_TE_662744 Os_TE_662744 Chr11 9323751 9323750 - ORSgTETN00200001 10994 0.0104 (31/2974) 0 * Os_TE_662745 Os_TE_662717 Chr11 9319103 9311933 + CACTA-B 1103 0.3674 (1068/2907) 1 Intact Os_TE_662707 Os_TE_662707 Chr11 9311933 9319101 - ORSgTETN00200001 10994 0.3448 (975/2828) 1 Intact Os_TE_662717 Os_TE_662704 Chr11 9311394 9311393 - ORSgTETN00200001 10994 0.1799 (436/2424) 0 * * Os_TE_662679 Chr11 9303703 9303704 - INDITTO 263 0.1156 (346/2994) 0 * Os_TE_662678 Os_TE_662678 Chr11 9303701 9303700 + INDITTO 263 0.1129 (338/2993) 0 * Os_TE_662679 Os_TE_662675 Chr11 9302473 9302474 - SZ-22_LTR 4403 0.0003 (1/2987) 0 * Os_TE_662674 Os_TE_662674 Chr11 9302469 9302468 + ORSiTERTOOT00226 792 0.0003 (1/2983) 0 * Os_TE_662675 Os_TE_662667 Chr11 9298895 9298896 + ORSiTERTOOT00034 791 0.0003 (1/2979) 0 * Os_TE_662666 Os_TE_662666 Chr11 9298891 9298890 - SZ-22_LTR 4403 0.0003 (1/2980) 0 * Os_TE_662667 Os_TE_662659 Chr11 9295317 9295316 - OSTE15 1168 0.0646 (191/2958) 0 * Os_TE_662658 Os_TE_662658 Chr11 9295291 9295292 - OSTE15 1168 0.0655 (193/2948) 0 * Os_TE_662659 Os_TE_662633 Chr11 9289648 9289649 - RIRE2_LTR 11306 0.0255 (76/2982) 0 * * Os_TE_662618 Chr11 9283507 9283506 - TYPEM 227 0.0016 (3/1912) 0 * * Os_TE_662606 Chr11 9280377 9280378 + TRUNCATOR 2918 0.1848 (352/1905) 0 * * Os_TE_662605 Chr11 9279286 9279287 - RIREX_LTR 8828 0.0003 (1/2995) 0 * * Os_TE_662577 Chr11 9269856 9269857 + ORSiCMCM00100019 2717 0.0714 (131/1836) 0 * * Os_TE_662539 Chr11 9256403 9256404 + ORSgTEMT01700789 143 0.0007 (2/2859) 0 * * Os_TE_662506 Chr11 9247224 9247223 + YOUREN 286 0.0977 (282/2887) 0 * * Os_TE_662505 Chr11 9247136 9247137 - GAIJIN 147 0.0003 (1/2901) 0 * * Os_TE_662482 Chr11 9243150 9243151 - ORSgTEMT02400179 221 0.0003 (1/2881) 0 * Os_TE_662481 Os_TE_662481 Chr11 9243149 9243148 - TYPEM 227 0.0003 (1/2891) 0 * Os_TE_662482 Os_TE_662479 Chr11 9242960 9242961 + ORSiTETN00100011 676 0.0011 (2/1775) 0 * Os_TE_662477 Os_TE_662477 Chr11 9242947 9242946 + DS-RICE4N 715 0.3109 (892/2869) 0 * Os_TE_662479 Os_TE_662476 Chr11 9242946 9242947 + ORSiTETN00100018 738 0.3314 (969/2924) 0 * * Os_TE_662439 Chr11 9233650 9233651 + TRUNCATOR 2918 0.0124 (37/2993) 0 * * Os_TE_662437 Chr11 9232824 9232823 - COPIA3-LTR_OS 5061 0.0027 (8/2988) 0 * * Os_TE_662397 Chr11 9221671 9221672 + COPIA1-LTR_OS 9292 0.0027 (8/2964) 0 * * Os_TE_662381 Chr11 9218003 9218002 - TRUNCATOR 2918 0.2947 (880/2986) 0 * Os_TE_662380 Os_TE_662380 Chr11 9218002 9218003 + TRUNCATOR 2918 0.2944 (876/2976) 0 * Os_TE_662381 Os_TE_662350 Chr11 9203653 9203654 - RIRE2_LTR 11306 0.0024 (7/2915) 0 * Os_TE_662349 Os_TE_662349 Chr11 9203650 9203649 - ORSgTERT00201216 11284 0.0031 (9/2930) 0 * Os_TE_662350 Os_TE_662343 Chr11 9201651 9201652 - SZ-67LTR 1540 0.0267 (79/2958) 0 * Os_TE_662342 Os_TE_662342 Chr11 9201647 9201646 + SZ-67LTR 1540 0.0219 (63/2883) 0 * Os_TE_662343 Os_TE_662319 Chr11 9184284 9184285 - MuDR4_OS 7610 0.0093 (27/2917) 0 * Os_TE_662318 Os_TE_662318 Chr11 9184276 9184275 - MuDR4_OS 7610 0.0100 (29/2908) 0 * Os_TE_662319 Os_TE_662312 Chr11 9179107 9179108 + SC-8_LTR 4951 0.0007 (2/2993) 0 * Os_TE_662311 Os_TE_662311 Chr11 9179103 9179102 - SC-8_LTR 4951 0.0007 (2/2994) 0 * Os_TE_662312 Os_TE_662300 Chr11 9175028 9175029 + ORSgTERT00200919 424 0.0004 (1/2512) -1 * * Os_TE_662295 Chr11 9167712 9167713 - SC-3_LTR 5748 0.0003 (1/2975) 0 * Os_TE_662294 Os_TE_662294 Chr11 9167708 9167707 + ORSiTERTOOT00296 5553 0.0003 (1/2979) 0 * Os_TE_662295 Os_TE_662289 Chr11 9163420 9163421 + ORSiTERTOOT00296 5553 0.0003 (1/2971) 0 * Os_TE_662288 Os_TE_662288 Chr11 9163416 9163415 - SC-3_LTR 5748 0.0003 (1/2975) 0 * Os_TE_662289 Os_TE_662277 Chr11 9155712 9155713 + TYPEU4 402 0.0017 (5/2967) 0 * Os_TE_662276 Os_TE_662276 Chr11 9155704 9155703 - TYPEU1 380 0.0017 (5/2951) 0 * Os_TE_662277 Os_TE_662249 Chr11 9147903 9147902 - ORSgTEMT02000041 194 0.0010 (3/2972) 0 * * Os_TE_662138 Chr11 9104012 9104013 + TRUNCATOR 2918 0.0236 (70/2965) 0 * * Os_TE_662132 Chr11 9102967 9102968 - SC-4_LTR 5218 0.0003 (1/2996) 0 * * Os_TE_662118 Chr11 9097919 9097918 - TRUNCATOR2_LTR 2904 0.1908 (572/2998) 0 * * Os_TE_662110 Chr11 9095449 9095450 - RETROSAT2LTR 12796 0.0117 (35/2985) 0 * * Os_TE_662109 Chr11 9095240 9095241 - TRUNCATOR2_LTR 2904 0.5385 (1600/2971) 0 * Os_TE_662108 Os_TE_662108 Chr11 9095236 9095235 + TRUNCATOR2_LTR 2904 0.5399 (1604/2971) 0 * Os_TE_662109 Os_TE_662101 Chr11 9089356 9089355 - MDR1 7383 0.8842 (2649/2996) 0 * * Os_TE_662097 Chr11 9089146 9089147 - RETROSAT2LTR 12796 0.0157 (47/2991) 0 * * Os_TE_662084 Chr11 9085554 9085553 + RETRO2A_LTR 12895 0.0120 (35/2905) 0 * * Os_TE_662080 Chr11 9084690 9084691 - SC-3_LTR 5748 0.0003 (1/2965) 0 * Os_TE_662079 Os_TE_662079 Chr11 9084686 9084685 + ORSiTERTOOT00296 5553 0.0003 (1/2966) 0 * Os_TE_662080 Os_TE_662056 Chr11 9070301 9070300 - TYPEH 309 0.0004 (1/2674) 0 * * Os_TE_662045 Chr11 9068885 9068886 + RIREX_LTR 8828 0.0144 (43/2982) 0 * * Os_TE_662039 Chr11 9067959 9067960 + TELIA 141 0.0007 (2/2942) 0 * Os_TE_662038 Os_TE_662038 Chr11 9067951 9067950 - TELIA 141 0.0007 (2/2945) 0 * Os_TE_662039 Os_TE_662037 Chr11 9065961 9065962 - ORSgTEMT02400179 221 0.0010 (3/2884) 0 * * Os_TE_661992 Chr11 9043577 9043576 - TRUNCATOR 2918 0.0553 (137/2477) 0 * * Os_TE_661986 Chr11 9042517 9042516 + HELITRON2_OS 15167 0.0014 (4/2952) 0 * * Os_TE_661979 Chr11 9036395 9036396 + ORSiTERTOOT00296 5553 0.0054 (16/2989) 0 * Os_TE_661978 Os_TE_661978 Chr11 9036391 9036390 - SC-3_LTR 5748 0.0053 (16/2992) 0 * Os_TE_661979 Os_TE_661953 Chr11 9029032 9029033 - RETRO1_LTR 8314 0.0234 (69/2946) 0 * Os_TE_661952 Os_TE_661952 Chr11 9029028 9029027 + RETRO2A_LTR 12895 0.0237 (70/2951) 0 * Os_TE_661953 Os_TE_661925 Chr11 9019779 9018648 - CLOUD-6 508 0.7754 (2210/2850) 1 Intact Os_TE_661922 Os_TE_661922 Chr11 9018648 9019779 - CLOUD-6 508 0.8148 (2323/2851) 1 Intact Os_TE_661925 Os_TE_661921 Chr11 9018393 9018392 + OSMU5 4881 0.2287 (682/2982) 0 * * Os_TE_661912 Chr11 9016396 9016395 + TRUNCATOR 2918 0.4157 (1221/2937) 0 * * Os_TE_661900 Chr11 9011956 9011957 + ORSiTERTOOT00034 791 0.0003 (1/2981) 0 * * Os_TE_661888 Chr11 9004969 9004970 - RETROSAT2LTR 12796 0.2251 (673/2990) 0 * * Os_TE_661865 Chr11 8989587 8989586 - INDITTO 263 0.1530 (411/2686) 0 * * Os_TE_661853 Chr11 8986803 8986804 - HARB-1_OS 5166 0.0013 (4/2984) 0 * * Os_TE_661852 Chr11 8986689 8986690 - INDITTO 263 0.0010 (3/2964) 0 * Os_TE_661851 Os_TE_661851 Chr11 8986683 8986682 - ORSgTETNOOT00053 263 0.0007 (2/2971) 0 * Os_TE_661852 Os_TE_661849 Chr11 8986446 8986445 + ORSgTEMT00101542 317 0.3343 (560/1675) 0 * * Os_TE_661832 Chr11 8984359 8984360 - RETRO2_LTR 12874 0.2030 (587/2892) 0 * * Os_TE_661825 Chr11 8981276 8981275 - ORSgTEMT01601432 239 0.0208 (62/2978) 0 * Os_TE_661824 Os_TE_661824 Chr11 8981273 8981274 + ORSgTEMT01601934 207 0.0215 (64/2980) 0 * Os_TE_661825 Os_TE_661823 Chr11 8981186 8981185 - ORSgTEMT01602404 253 0.0264 (79/2989) 0 * Os_TE_661822 Os_TE_661822 Chr11 8981183 8981184 + ORSgTEMT01602181 239 0.0278 (83/2988) 0 * Os_TE_661823 Os_TE_661820 Chr11 8980363 8980364 + RIREX_LTR 8828 0.0079 (19/2390) 0 * Os_TE_661819 Os_TE_661819 Chr11 8980359 8980358 - RIREX_LTR 8828 0.0078 (19/2446) 0 * Os_TE_661820 Os_TE_661813 Chr11 8979860 8979859 - ORSgTEMT02400246 177 0.0012 (3/2427) 0 * Os_TE_661812 Os_TE_661812 Chr11 8979859 8979860 - TYPEM 227 0.0013 (3/2347) 0 * Os_TE_661813 Os_TE_661766 Chr11 8954887 8954888 + TRUNCATOR 2918 0.0003 (1/2867) 0 * * Os_TE_661743 Chr11 8945427 8946634 - COPIA1-LTR_OS 9292 0.8130 (1187/1460) 1 Solo_LTR * Os_TE_661736 Chr11 8943504 8943503 - COPI2_LTR 4733 0.0003 (1/2976) 0 * * Os_TE_661717 Chr11 8934752 8934753 + INDITTO 263 0.0095 (28/2952) 0 * Os_TE_661716 Os_TE_661716 Chr11 8934750 8934749 + ORSgTETNOOT00221 261 0.0017 (5/2938) 0 * Os_TE_661717 Os_TE_661710 Chr11 8933653 8933652 - ORSgTEMT01400038 210 0.0054 (16/2979) 0 * * Os_TE_661709 Chr11 8933192 8933191 - ECR 394 0.0037 (11/2977) 0 * * Os_TE_661704 Chr11 8931578 8931579 + ORSgTEMT00501279 126 0.0030 (9/2970) 0 * Os_TE_661703 Os_TE_661703 Chr11 8931576 8931575 + GAIJIN 147 0.0030 (9/2971) 0 * Os_TE_661704 Os_TE_661682 Chr11 8917737 8917738 + RIREX_LTR 8828 0.0029 (3/1042) 0 * * Os_TE_661641 Chr11 8898235 8886232 + TRUNCATOR 2918 0.4398 (1012/2301) 1 Intact Os_TE_661621 Os_TE_661621 Chr11 8886227 8898235 - TRUNCATOR 2918 0.4321 (986/2282) 1 Intact Os_TE_661641 Os_TE_661619 Chr11 8885723 8885724 + COPIA2-LTR_OS 6433 0.0004 (1/2296) 0 * Os_TE_661618 Os_TE_661618 Chr11 8885719 8885718 - COPIA2-LTR_OS 6433 0.0004 (1/2300) 0 * Os_TE_661619 Os_TE_661615 Chr11 8882056 8882055 + DS-RICE3N 525 0.0481 (141/2931) 0 * * Os_TE_661580 Chr11 8863590 8863836 - ORSgTEMT00900099 250 0.7182 (2128/2963) 1 Intact * Os_TE_661577 Chr11 8862738 8862737 - ORSgTEMT01601208 238 0.2882 (844/2929) 0 * Os_TE_661576 Os_TE_661576 Chr11 8862735 8862736 - ORSgTEMT01600639 228 0.2947 (869/2949) 0 * Os_TE_661577 Os_TE_661568 Chr11 8855846 8855847 + SZ-46LTR 3360 0.0027 (8/2993) 0 * Os_TE_661567 Os_TE_661567 Chr11 8855842 8855841 - SZ-46LTR 3360 0.0030 (9/2992) 0 * Os_TE_661568 Os_TE_661565 Chr11 8854769 8854768 + ORSiCMCM00100016 1387 0.0032 (9/2797) 0 * * Os_TE_661559 Chr11 8850177 8850176 - COPI2_LTR 4733 0.0003 (1/2990) 0 * * Os_TE_661558 Chr11 8849979 8849980 + SZ-30_LTR 6377 0.0027 (8/2987) 0 * * Os_TE_661554 Chr11 8848696 8848695 + TRSA_OS 353 0.0003 (1/2960) 0 * * Os_TE_661553 Chr11 8847678 8847679 + RIRE5-LTR_OS 6427 0.0030 (9/2973) 0 * * Os_TE_661551 Chr11 8847027 8847026 + RETROSAT6_LTR 10490 0.0032 (9/2829) 0 * * Os_TE_661549 Chr11 8845180 8845181 - ORSgTERT00201216 11284 0.0142 (40/2825) 0 * Os_TE_661548 Os_TE_661548 Chr11 8845176 8845175 - RIRE2_LTR 11306 0.0149 (42/2827) 0 * Os_TE_661549 Os_TE_661538 Chr11 8836524 8836525 - COPI2_LTR 4733 0.0033 (4/1199) 0 * Os_TE_661537 Os_TE_661537 Chr11 8836520 8836519 + COPI2_LTR 4733 0.0034 (4/1184) 0 * Os_TE_661538 Os_TE_661490 Chr11 8824035 8824036 - COPIA2-LTR_OS 6433 0.0003 (1/2984) 0 * Os_TE_661489 Os_TE_661489 Chr11 8824031 8824030 + COPIA2-LTR_OS 6433 0.0003 (1/2982) 0 * Os_TE_661490 Os_TE_661424 Chr11 8802638 8802747 + OSTE18 129 0.3948 (1173/2971) 1 Intact * Os_TE_661423 Chr11 8802291 8801572 - BAJIELTR 4500 0.3935 (1177/2991) 1 Solo_LTR * Os_TE_661400 Chr11 8796676 8796677 - COPI2_LTR 4733 0.0010 (3/2951) 0 * Os_TE_661399 Os_TE_661399 Chr11 8796672 8796671 + COPI2_LTR 4733 0.0007 (2/2970) 0 * Os_TE_661400 Os_TE_661397 Chr11 8793371 8793372 - SC-8_LTR 4951 0.0003 (1/2935) 0 * * Os_TE_661391 Chr11 8791875 8791874 - ORSgTEMT00900099 250 0.6157 (1812/2943) 0 * * Os_TE_661384 Chr11 8787914 8787915 + ORSiTERTOOT00226 792 0.0003 (1/2863) 0 * Os_TE_661383 Os_TE_661383 Chr11 8787910 8787909 - SZ-22_LTR 4403 0.0003 (1/2985) 0 * Os_TE_661384 Os_TE_661372 Chr11 8784730 8784731 + RETROSOR2_LTR 11699 0.2228 (668/2998) 0 * Os_TE_661371 Os_TE_661371 Chr11 8784726 8784725 - SZ-50_LTR 11691 0.2238 (671/2998) 0 * Os_TE_661372 Os_TE_661368 Chr11 8780952 8780951 + ORSgTEMT01700791 134 0.0208 (62/2986) 0 * Os_TE_661367 Os_TE_661367 Chr11 8780949 8780950 + ORSgTEMT01701016 130 0.0208 (62/2986) 0 * Os_TE_661368 Os_TE_661366 Chr11 8780310 8780309 - EnSpm-10_OS 11265 0.0043 (13/2995) 0 * * Os_TE_661326 Chr11 8770125 8770126 + COPIA2-LTR_OS 6433 0.0010 (3/2987) 0 * Os_TE_661325 Os_TE_661325 Chr11 8770121 8770120 - COPIA2-LTR_OS 6433 0.0010 (3/2987) 0 * Os_TE_661326 Os_TE_661310 Chr11 8763309 8763308 + COPIA2-LTR_OS 6433 0.1913 (572/2990) 0 * * Os_TE_661306 Chr11 8762326 8762327 + TRUNCATOR 2918 0.1341 (357/2662) 0 * * Os_TE_661302 Chr11 8760731 8760730 + TRUNCATOR 2918 0.0094 (27/2858) 0 * Os_TE_661301 Os_TE_661301 Chr11 8760730 8760731 - TRUNCATOR 2918 0.0083 (24/2880) 0 * Os_TE_661302 Os_TE_661274 Chr11 8750334 8750333 - TRUNCATOR2_LTR 2904 0.3942 (1093/2773) 0 * * Os_TE_661266 Chr11 8747830 8747831 - MuDR4_OS 7610 0.0278 (60/2157) 0 * * Os_TE_661255 Chr11 8739959 8739960 + ORSiTERTOOT00027 10853 0.4659 (1100/2361) 0 * * Os_TE_661253 Chr11 8739700 8739701 + TRUNCATOR 2918 0.0853 (201/2356) 0 * * Os_TE_661237 Chr11 8733874 8733875 - RIREX_LTR 8828 0.0007 (2/2798) 0 * Os_TE_661236 Os_TE_661236 Chr11 8733870 8733869 + RIREX_LTR 8828 0.0009 (2/2282) 0 * Os_TE_661237 Os_TE_661235 Chr11 8732303 8732047 - STOWAWAY34_OS 256 0.8026 (2309/2877) 1 Intact * Os_TE_661230 Chr11 8731949 8730089 - TNR3 1536 0.5340 (1224/2292) 1 Intact Os_TE_661229 Os_TE_661229 Chr11 8730089 8731949 - ENSPM3_OS 10837 0.4367 (1267/2901) 1 Intact Os_TE_661230 Os_TE_661228 Chr11 8728866 8728865 + TRUNCATOR 2918 0.0538 (153/2843) 0 * * Os_TE_661227 Chr11 8728782 8728783 + RIREX_LTR 8828 0.0269 (62/2302) 0 * Os_TE_661226 Os_TE_661226 Chr11 8728778 8728777 - RIREX_LTR 8828 0.0264 (62/2352) 0 * Os_TE_661227 Os_TE_661214 Chr11 8722189 8728602 - COPIA3-LTR_OS 5061 0.8612 (2295/2665) 1 Intact * Os_TE_661196 Chr11 8714951 8714952 + COPIA2-LTR_OS 6433 0.0004 (1/2363) 0 * * Os_TE_661194 Chr11 8714665 8714666 - RETRO1_LTR 8314 0.3589 (702/1956) 0 * * Os_TE_661160 Chr11 8708541 8707954 + SZ-7_LTR 11457 0.5102 (1277/2503) 1 Solo_LTR * Os_TE_661153 Chr11 8705143 8705144 - INDITTO 263 0.4696 (1106/2355) 0 * * Os_TE_661149 Chr11 8701044 8701045 - AMYLTP 383 0.4620 (1076/2329) 0 * Os_TE_661148 Os_TE_661148 Chr11 8701036 8701035 + AMYLTP 383 0.4601 (1068/2321) 0 * Os_TE_661149 Os_TE_661140 Chr11 8689199 8700261 + SPMLIKE 10989 0.4019 (879/2187) 1 Intact * Os_TE_661109 Chr11 8679865 8679866 + ORSgTETNOOT00908 242 0.0004 (1/2272) 0 * * Os_TE_661106 Chr11 8679572 8679571 - OLO24 345 0.0004 (1/2330) 0 * * Os_TE_661098 Chr11 8674816 8674817 + SPMLIKE 10989 0.0239 (56/2342) 0 * * Os_TE_661095 Chr11 8673625 8673626 - COPI2_LTR 4733 0.0009 (2/2352) 0 * Os_TE_661094 Os_TE_661094 Chr11 8673621 8673620 + COPI2_LTR 4733 0.0004 (1/2352) 0 * Os_TE_661095 Os_TE_661041 Chr11 8652333 8652332 + ORSgTEMT00300122 416 0.0004 (1/2335) 0 * * Os_TE_660983 Chr11 8612559 8612558 + TRUNCATOR 2918 0.0341 (102/2993) 0 * Os_TE_660982 Os_TE_660982 Chr11 8612558 8612559 - TRUNCATOR 2918 0.0331 (99/2994) 0 * Os_TE_660983 Os_TE_660962 Chr11 8601444 8601445 + ORSiTERTOOT00226 792 0.0003 (1/2998) 0 * * Os_TE_660952 Chr11 8599270 8599271 + ORSgTEMT01601591 242 0.0003 (1/2872) 0 * * Os_TE_660951 Chr11 8598976 8598977 + RIREX_LTR 8828 0.0039 (11/2853) 0 * Os_TE_660950 Os_TE_660950 Chr11 8598972 8598971 - RIREX_LTR 8828 0.0037 (11/2991) 0 * Os_TE_660951 Os_TE_660925 Chr11 8589962 8589963 - COPIA2-LTR_OS 6433 0.0003 (1/2979) 0 * * Os_TE_660874 Chr11 8576135 8576136 + SZ-62LTR 3649 0.1673 (475/2839) 0 * * Os_TE_660855 Chr11 8564821 8564820 + RETROSAT4_LTR 13504 0.1796 (529/2946) 0 * * Os_TE_660849 Chr11 8558308 8558307 - ORSgTETN00200001 10994 0.1316 (387/2941) 0 * * Os_TE_660848 Chr11 8557040 8557041 + ORSgTETNOOT00221 261 0.0003 (1/2989) 0 * * Os_TE_660835 Chr11 8545536 8553153 + MuDR4_OS 7610 0.3481 (1043/2996) 1 Intact * Os_TE_660834 Chr11 8545342 8545343 + HARB-1_OS 5166 0.0003 (1/2886) 0 * Os_TE_660833 Os_TE_660833 Chr11 8545340 8545339 - HARB-1_OS 5166 0.0003 (1/2987) 0 * Os_TE_660834 Os_TE_660832 Chr11 8544942 8544941 - TRUNCATOR 2918 0.0033 (10/2997) 0 * Os_TE_660831 Os_TE_660831 Chr11 8544941 8544942 + TRUNCATOR 2918 0.0033 (10/2996) 0 * Os_TE_660832 Os_TE_660806 Chr11 8533114 8533115 + ORSiCMCM00100019 2717 0.2226 (658/2956) 0 * * Os_TE_660773 Chr11 8525061 8525060 - TEOS1 476 0.6544 (1931/2951) 0 * * Os_TE_660768 Chr11 8522394 8522393 - RIREX_LTR 8828 0.0003 (1/2952) 0 * * Os_TE_660758 Chr11 8518944 8518945 - RIREX_LTR 8828 0.0003 (1/2993) 0 * * Os_TE_660753 Chr11 8518002 8518001 + SZ-19LTR 1513 0.0030 (9/2981) 0 * * Os_TE_660669 Chr11 8476401 8476400 + TRUNCATOR 2918 0.0059 (17/2893) 0 * * Os_TE_660621 Chr11 8461296 8461295 - OSTE33 1012 0.6511 (1935/2972) 0 * * Os_TE_660616 Chr11 8459104 8459105 + AMYLTP 383 0.0038 (11/2911) 0 * * Os_TE_660613 Chr11 8457204 8457203 - RIREX_LTR 8828 0.0003 (1/2963) 0 * * Os_TE_660606 Chr11 8454961 8454962 + SPMLIKE 10989 0.0044 (13/2985) 0 * * Os_TE_660599 Chr11 8451571 8451072 - MuDR4_OS 7610 0.3323 (972/2925) 1 Intact Os_TE_660597 Os_TE_660597 Chr11 8451068 8451567 - MuDR4_OS 7610 0.3479 (1035/2975) 1 Intact Os_TE_660599 Os_TE_660585 Chr11 8439171 8439170 + ORSgTEMT00600272 361 0.0204 (61/2988) 0 * * Os_TE_660581 Chr11 8436512 8423654 + RETRO2A_LTR 12895 0.3667 (1048/2858) 1 Intact Os_TE_660576 Os_TE_660576 Chr11 8423654 8436512 - RETRO1_LTR 8314 0.3621 (1031/2847) 1 Intact Os_TE_660581 Os_TE_660555 Chr11 8418925 8418926 + SC-8_LTR 4951 0.0003 (1/2985) 0 * * Os_TE_660538 Chr11 8412670 8412671 + TRUNCATOR 2918 0.0038 (11/2878) 0 * * Os_TE_660521 Chr11 8390554 8390555 - ORSgTETN00200001 10994 0.2877 (849/2951) 0 * Os_TE_660520 Os_TE_660520 Chr11 8390552 8390551 + SPMLIKE 10989 0.2912 (861/2957) 0 * Os_TE_660521 Os_TE_660359 Chr11 8325147 8325148 - F118 179 0.0032 (9/2797) 0 * * Os_TE_660358 Chr11 8325124 8325125 + TRUNCATOR 2918 0.0545 (160/2935) 0 * * Os_TE_660313 Chr11 8305602 8305603 - TRUNCATOR2_LTR 2904 0.0024 (7/2889) 0 * * Os_TE_660278 Chr11 8288949 8288948 - COPIA2-LTR_OS 6433 0.0061 (18/2945) 0 * * Os_TE_660268 Chr11 8275955 8275956 - COPIA2-LTR_OS 6433 0.0003 (1/2862) 0 * * Os_TE_660260 Chr11 8273258 8273259 - RETROSAT5_LTR 13878 0.7907 (2324/2939) 0.97 * * Os_TE_660255 Chr11 8271520 8271521 + CACTA-I 1124 0.0061 (18/2939) 0 * Os_TE_660254 Os_TE_660254 Chr11 8271518 8271517 - ORSgTETN00200001 10994 0.0061 (18/2940) 0 * Os_TE_660255 Os_TE_660187 Chr11 8244895 8244894 - TEMPINDAS 4259 0.0066 (16/2419) 0 * * Os_TE_660186 Chr11 8244582 8244581 - UNIQUE 158 0.1897 (556/2931) 0 * * Os_TE_660173 Chr11 8239768 8239769 + HARB-1_OS 5166 0.0066 (19/2898) 0 * * Os_TE_660172 Chr11 8239619 8239618 - ORSgTEMT01602413 239 0.1970 (562/2853) 0 * * Os_TE_660170 Chr11 8239258 8239515 - ORSgTEMT00101342 258 0.8186 (2342/2861) 1 Intact * Os_TE_660072 Chr11 8190298 8187500 + TRUNCATOR 2918 0.3568 (1043/2923) 1 Intact * Os_TE_660046 Chr11 8181858 8181857 - TRUNCATOR 2918 0.0685 (205/2991) 0 * Os_TE_660045 Os_TE_660045 Chr11 8181857 8181858 + TRUNCATOR 2918 0.0712 (211/2965) 0 * Os_TE_660046 Os_TE_660044 Chr11 8181785 8181786 - TRUNCATOR2_LTR 2904 0.0050 (15/2976) 0 * Os_TE_660043 Os_TE_660043 Chr11 8181781 8181780 + TRUNCATOR2_LTR 2904 0.0040 (12/2969) 0 * Os_TE_660044 Os_TE_660041 Chr11 8180616 8170628 + SPMLIKE 10989 0.3479 (1041/2992) 1 Intact Os_TE_660028 Os_TE_660028 Chr11 8170628 8180616 - ORSgTETN00200001 10994 0.3433 (1024/2983) 1 Intact Os_TE_660041 Os_TE_660026 Chr11 8169991 8169990 + TRUNCATOR 2918 0.0277 (73/2633) 0 * * Os_TE_660024 Chr11 8169074 8169073 + SEVERIN-2 1952 0.5841 (1455/2491) 0 * Os_TE_660023 Os_TE_660023 Chr11 8169068 8169069 - SEVERIN-2 1952 0.6594 (1963/2977) 0 * Os_TE_660024 Os_TE_660019 Chr11 8166708 8166709 - SC-3_LTR 5748 0.0003 (1/2985) 0 * Os_TE_660018 Os_TE_660018 Chr11 8166704 8166703 + ORSiTERTOOT00296 5553 0.0003 (1/2985) 0 * Os_TE_660019 Os_TE_660017 Chr11 8166496 8166497 - TRUNCATOR 2918 0.0020 (6/2994) 0 * * Os_TE_660016 Chr11 8165217 8165216 + TRUNCATOR 2918 0.0020 (6/2994) 0 * * Os_TE_660013 Chr11 8162827 8162826 - DS-RICE4N 715 0.0201 (60/2987) 0 * * Os_TE_660006 Chr11 8159436 8159435 - ORSgTEMT00501356 145 0.6417 (1809/2819) 0 * Os_TE_660005 Os_TE_660005 Chr11 8159435 8159436 + ORSgTETNOOT00686 140 0.0224 (24/1073) 0 * Os_TE_660006 Os_TE_660003 Chr11 8156216 8156217 - SC-8_LTR 4951 0.0037 (4/1067) 0 * Os_TE_660002 Os_TE_660002 Chr11 8156212 8156211 + SC-8_LTR 4951 0.0028 (3/1061) 0 * Os_TE_660003 Os_TE_659978 Chr11 8137102 8137103 + COPIA2-LTR_OS 6433 0.0019 (2/1069) 0 * * Os_TE_659976 Chr11 8136870 8136871 + COPIA2-LTR_OS 6433 0.0084 (9/1070) 0 * Os_TE_659975 Os_TE_659975 Chr11 8136866 8136865 - COPIA2-LTR_OS 6433 0.0084 (9/1067) 0 * Os_TE_659976 Os_TE_659910 Chr11 8105546 8105545 - ORSgTEMT00100455 329 0.6175 (1734/2808) 0 * * Os_TE_659909 Chr11 8105469 8105470 - ORSgTEMT00100578 341 0.6361 (1865/2932) 0 * * Os_TE_659908 Chr11 8105441 8105442 + ORSgTEMT00300063 413 0.0017 (5/2956) 0 * * Os_TE_659896 Chr11 8093952 8093953 - ORSgTEMT02300007 256 0.6165 (1749/2837) 0 * * Os_TE_659895 Chr11 8093868 8093869 + RIREX_LTR 8828 0.0057 (14/2472) 0 * * Os_TE_659891 Chr11 8092622 8092845 - ORSgTEMT01602467 227 0.3831 (1050/2741) 1 Intact * Os_TE_659884 Chr11 8088703 8088704 + SZ-7_LTR 11457 0.0270 (80/2960) 0 * * Os_TE_659880 Chr11 8088309 8088310 - BAJIELTR 4500 0.0271 (79/2913) 0 * * Os_TE_659878 Chr11 8085025 8085026 + ORSgTEMT00300093 396 0.6255 (1812/2897) 0 * * Os_TE_659877 Chr11 8084731 8084732 - COPI2_LTR 4733 0.0003 (1/2980) 0 * Os_TE_659876 Os_TE_659876 Chr11 8084727 8084726 + COPI2_LTR 4733 0.0003 (1/2974) 0 * Os_TE_659877 Os_TE_659852 Chr11 8077384 8077383 + STOWAWAY49_OS 241 0.5854 (1703/2909) 0 * * Os_TE_659848 Chr11 8076484 8076485 + ENSPM5_OS 9581 0.0223 (44/1971) 0 * * Os_TE_659837 Chr11 8072517 8072518 - RIREX_LTR 8828 0.0003 (1/2922) 0 * Os_TE_659836 Os_TE_659836 Chr11 8072513 8072512 + RIREX_LTR 8828 0.0003 (1/2927) 0 * Os_TE_659837 Os_TE_659835 Chr11 8072381 8072382 - RIREX_LTR 8828 0.0003 (1/2918) 0 * Os_TE_659834 Os_TE_659834 Chr11 8072377 8072376 + RIREX_LTR 8828 0.0003 (1/2917) 0 * Os_TE_659835 Os_TE_659738 Chr11 8038476 8046018 - CRMA1_LTR 7543 0.5575 (1052/1887) 1 Intact * Os_TE_659702 Chr11 8028673 8028674 - ORSiTERTOOT00274 4749 0.0031 (9/2917) 0 * * Os_TE_659682 Chr11 8018652 8018651 - ORSgTEMT02400246 177 0.0003 (1/2956) 0 * Os_TE_659681 Os_TE_659681 Chr11 8018651 8018652 - TYPEM 227 0.0003 (1/2998) 0 * Os_TE_659682 Os_TE_659622 Chr11 7985994 7985993 + CACTA-B 1103 0.0933 (279/2991) 0 * Os_TE_659621 Os_TE_659621 Chr11 7985993 7985994 - ORSgTETN00200001 10994 0.0873 (260/2977) 0 * Os_TE_659622 Os_TE_659620 Chr11 7985971 7985972 + ORSiTERTOOT00396 5939 0.0017 (5/2986) 0 * Os_TE_659619 Os_TE_659619 Chr11 7985967 7985966 - ORSiTERTOOT00396 5939 0.0017 (5/2896) 0 * Os_TE_659620 Os_TE_659617 Chr11 7985388 7985387 - EnSpm-13_OS 11171 0.0033 (10/2997) 0 * * Os_TE_659602 Chr11 7982687 7982688 + SEVERIN-2 1952 0.0004 (1/2433) -1 * * Os_TE_659599 Chr11 7981474 7981475 + TESSBIG 4057 0.0200 (56/2799) 0 * Os_TE_659598 Os_TE_659598 Chr11 7981467 7981466 - TESSBIG 4057 0.0214 (60/2805) 0 * Os_TE_659599 Os_TE_659530 Chr11 7952440 7952441 - COPI2_LTR 4733 0.0003 (1/2974) 0 * * Os_TE_659509 Chr11 7944503 7944502 + ORSgTEMT02400245 225 0.0007 (2/2976) 0 * Os_TE_659508 Os_TE_659508 Chr11 7944502 7944503 - TYPEM 227 0.0007 (2/2974) 0 * Os_TE_659509 Os_TE_659475 Chr11 7934269 7934270 - SC-3_LTR 5748 0.0030 (9/2980) 0 * Os_TE_659474 Os_TE_659474 Chr11 7934265 7934264 + ORSiTERTOOT00296 5553 0.0030 (9/2981) 0 * Os_TE_659475 Os_TE_659452 Chr11 7921830 7921831 + CASGRANDA 465 0.0250 (62/2476) 0 * * Os_TE_659451 Chr11 7921679 7921680 + OSTE20 496 0.0064 (1/157) -1 * * Os_TE_659450 Chr11 7921304 7919886 + OSTE33 1012 0.1596 (343/2149) -1 Intact * Os_TE_659417 Chr11 7906262 7906263 + ORSiTERTOOT00402 2660 0.0040 (12/2999) 0 * Os_TE_659416 Os_TE_659416 Chr11 7906258 7906257 - ORSiTERTOOT00402 2660 0.0037 (11/2998) 0 * Os_TE_659417 Os_TE_659390 Chr11 7897035 7897036 - RIRE2_LTR 11306 0.0017 (5/2996) 0 * Os_TE_659389 Os_TE_659389 Chr11 7897031 7897030 - ORSgTERT00201216 11284 0.0017 (5/2996) 0 * Os_TE_659390 Os_TE_659381 Chr11 7895066 7895067 - RIRE2_LTR 11306 0.1757 (498/2834) 0 * Os_TE_659380 Os_TE_659380 Chr11 7895062 7895061 - ORSgTERT00201216 11284 0.1762 (497/2821) 0 * Os_TE_659381 Os_TE_659374 Chr11 7894626 7894625 + RETRO2_LTR 12874 0.0025 (6/2360) 0 * * Os_TE_659361 Chr11 7889564 7889563 - ORSgTEMT00901870 238 0.0017 (2/1148) 0 * * Os_TE_659342 Chr11 7886728 7886729 - COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * Os_TE_659341 Os_TE_659341 Chr11 7886724 7886723 + COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * Os_TE_659342 Os_TE_659331 Chr11 7881991 7881990 - OSTE18 129 0.6398 (1908/2982) 0 * * Os_TE_659329 Chr11 7881696 7881553 + TNR2A 152 0.8658 (1103/1274) 1 Intact Os_TE_659327 Os_TE_659327 Chr11 7881553 7881694 - TNR2A 152 0.3860 (1117/2894) 1 Intact Os_TE_659329 Os_TE_659326 Chr11 7881476 7881475 - ORSgTEMT00900349 250 0.6136 (1715/2795) 0 * * Os_TE_659325 Chr11 7881356 7881357 - STOWAWAY11_OS 292 0.6320 (1848/2924) 0 * Os_TE_659324 Os_TE_659324 Chr11 7881355 7881354 + STOWAWAY11_OS 292 0.5971 (1611/2698) 0 * Os_TE_659325 Os_TE_659317 Chr11 7877106 7877250 - ORSgTEMT00500639 148 0.3879 (1106/2851) 1 Intact * Os_TE_659316 Chr11 7876853 7876609 - STOWAWAY51_OS 246 0.4035 (1115/2763) 1 Intact Os_TE_659310 Os_TE_659310 Chr11 7876612 7876853 - ORSgTEMT01602204 242 0.3858 (1125/2916) 1 Intact Os_TE_659316 Os_TE_659309 Chr11 7876164 7876025 + ORSgTEMT00502094 140 0.3819 (1129/2956) 1 Intact Os_TE_659308 Os_TE_659308 Chr11 7876019 7876161 + ORSgTEMT00502327 143 0.3729 (1116/2993) 1 Intact Os_TE_659309 Os_TE_659301 Chr11 7874432 7874431 + ORSgTETNOOT01225 240 0.0030 (8/2689) -1 * * Os_TE_659292 Chr11 7872539 7872540 + ORSgTEMT01700759 147 0.0030 (9/2991) 0 * * Os_TE_659281 Chr11 7864201 7864200 - SZ-22_LTR 4403 0.0003 (1/2929) 0 * * Os_TE_659274 Chr11 7862930 7862929 - ORSgTEMT00900075 250 0.1209 (359/2969) 0 * * Os_TE_659253 Chr11 7857152 7857153 - SC-3_LTR 5748 0.0003 (1/2991) 0 * * Os_TE_659248 Chr11 7855876 7855877 - ZM13-2_OS 108 0.0017 (5/2973) 0 * Os_TE_659247 Os_TE_659247 Chr11 7855874 7855873 + ORSiTETNOOT00011 98 0.0030 (9/2977) 0 * Os_TE_659248 Os_TE_659246 Chr11 7854722 7854602 + STOWAWAY46_OS 154 0.5387 (1516/2814) 1 Intact * Os_TE_659244 Chr11 7854417 7854418 - ORMOSIA 482 0.4973 (1485/2986) 0 * * Os_TE_659234 Chr11 7850956 7850957 + STOWAWAY43_OS 233 0.0058 (9/1564) 0 * * Os_TE_659232 Chr11 7849693 7849694 + DEBOAT 110 0.4938 (1476/2989) 0 * Os_TE_659231 Os_TE_659231 Chr11 7849686 7849685 - DEBOAT 110 0.4973 (1488/2992) 0 * Os_TE_659232 Os_TE_659228 Chr11 7849374 7840416 + GYPSY1-LTR_OS 8900 0.5270 (1570/2979) 1 Intact Os_TE_659216 Os_TE_659216 Chr11 7840416 7849374 - GYPSY1-LTR_OS 8900 0.5225 (1553/2972) 1 Intact Os_TE_659228 Os_TE_659200 Chr11 7833540 7833541 + COPI2_LTR 4733 0.0003 (1/2980) 0 * Os_TE_659199 Os_TE_659199 Chr11 7833536 7833535 - COPI2_LTR 4733 0.0003 (1/2980) 0 * Os_TE_659200 Os_TE_659194 Chr11 7830973 7830974 + COPIA2-LTR_OS 6433 0.0007 (2/2942) 0 * Os_TE_659193 Os_TE_659193 Chr11 7830969 7830968 - COPIA2-LTR_OS 6433 0.0007 (2/2940) 0 * Os_TE_659194 Os_TE_659174 Chr11 7822749 7822750 - ORSgTETNOOT02565 240 0.6161 (1810/2938) 0 * * Os_TE_659163 Chr11 7821929 7821928 + ORSgTEMT01601591 242 0.0010 (3/2965) 0 * Os_TE_659162 Os_TE_659162 Chr11 7821923 7821924 + STOWAWAY51_OS 246 0.0010 (3/2991) 0 * Os_TE_659163 Os_TE_659161 Chr11 7821497 7821498 + F770 284 0.0209 (62/2973) 0 * * Os_TE_659156 Chr11 7819030 7819031 - RIRE3_LTR 12054 0.0011 (2/1784) -1 * * Os_TE_659147 Chr11 7815441 7815442 - RIREX_LTR 8828 0.0190 (56/2954) 0 * Os_TE_659146 Os_TE_659146 Chr11 7815437 7815436 + RIREX_LTR 8828 0.0180 (53/2952) 0 * Os_TE_659147 Os_TE_659140 Chr11 7812058 7812057 - F569 228 0.0110 (33/2989) 0 * * Os_TE_659103 Chr11 7794296 7794297 - SC-3_LTR 5748 0.0003 (1/2997) 0 * * Os_TE_659100 Chr11 7792986 7792985 + COPI2_LTR 4733 0.0024 (7/2974) 0 * * Os_TE_659097 Chr11 7792635 7792636 - COPIA2-LTR_OS 6433 0.0085 (25/2942) 0 * Os_TE_659096 Os_TE_659096 Chr11 7792631 7792630 + COPIA2-LTR_OS 6433 0.0078 (23/2944) 0 * Os_TE_659097 Os_TE_659095 Chr11 7792603 7792602 + CACTA-H 1152 0.0139 (41/2949) 0 * Os_TE_659094 Os_TE_659094 Chr11 7792602 7792603 + ORSgTETN00200005 1121 0.0109 (32/2938) 0 * Os_TE_659095 Os_TE_659089 Chr11 7789492 7789493 - COPIA2-LTR_OS 6433 0.0003 (1/2986) 0 * * Os_TE_659076 Chr11 7780442 7780443 + SC-8_LTR 4951 0.0007 (2/2989) 0 * Os_TE_659075 Os_TE_659075 Chr11 7780438 7780437 - SC-8_LTR 4951 0.0007 (2/2981) 0 * Os_TE_659076 Os_TE_659005 Chr11 7741428 7741429 - ORSiTERT00200154 9386 0.0115 (34/2957) 0 * Os_TE_659004 Os_TE_659004 Chr11 7741422 7741421 + TRUNCATOR 2918 0.0129 (38/2955) 0 * Os_TE_659005 Os_TE_659003 Chr11 7740582 7740581 - ORSgTERT00201216 11284 0.0127 (38/2986) 0 * * Os_TE_658993 Chr11 7735867 7735868 - MERMITE18D 1491 0.0027 (8/2991) 0 * Os_TE_658992 Os_TE_658992 Chr11 7735861 7735860 - MERMITE-18 1263 0.0030 (9/2993) 0 * Os_TE_658993 Os_TE_658986 Chr11 7735018 7735017 + ORSgTEMT01701591 154 0.0030 (9/2959) 0 * Os_TE_658985 Os_TE_658985 Chr11 7735015 7735016 + ORSgTEMT01700789 143 0.0020 (6/2969) 0 * Os_TE_658986 Os_TE_658976 Chr11 7731797 7731796 + ORSgTERT00200924 3299 0.0003 (1/2983) 0 * * Os_TE_658946 Chr11 7724690 7724691 - MERMITE-18 1263 0.0017 (5/2923) 0 * * Os_TE_658930 Chr11 7718767 7718768 - DS-RICE4N 715 0.0021 (6/2923) 0 * * Os_TE_658929 Chr11 7718758 7718759 - TELIA 141 0.0007 (2/2903) 0 * Os_TE_658928 Os_TE_658928 Chr11 7718750 7718749 + TELIA 141 0.0007 (2/2943) 0 * Os_TE_658929 Os_TE_658923 Chr11 7718266 7718265 + STOWAWAY51_OS 246 0.0007 (2/2921) 0 * Os_TE_658922 Os_TE_658922 Chr11 7718260 7718261 + ORSgTEMT01601591 242 0.0007 (2/2921) 0 * Os_TE_658923 Os_TE_658921 Chr11 7717941 7717940 + ORSgTEMT00600120 364 0.0024 (7/2959) 0 * Os_TE_658920 Os_TE_658920 Chr11 7717933 7717934 - CASTAWAY 364 0.0030 (9/2980) 0 * Os_TE_658921 Os_TE_658913 Chr11 7711533 7711532 + STOWAWAY44_OS 240 0.0003 (1/2964) 0 * * Os_TE_658912 Chr11 7709622 7709623 + RETRO2A_LTR 12895 0.0115 (34/2965) 0 * Os_TE_658911 Os_TE_658911 Chr11 7709618 7709617 - RETRO1_LTR 8314 0.0114 (34/2975) 0 * Os_TE_658912 Os_TE_658888 Chr11 7697553 7697552 + ORSgTETNOOT00908 242 0.0003 (1/2983) 0 * * Os_TE_658878 Chr11 7693297 7684227 + HELITRON8_OS 8831 0.3893 (1162/2985) 1 Intact * Os_TE_658814 Chr11 7667416 7667415 - COPI2_LTR 4733 0.0003 (1/2961) 0 * * Os_TE_658807 Chr11 7663756 7663757 - RETRO2_LTR 12874 0.5168 (1492/2887) 0 * Os_TE_658806 Os_TE_658806 Chr11 7663752 7663751 + RETRO2A_LTR 12895 0.5320 (1587/2983) 0 * Os_TE_658807 Os_TE_658805 Chr11 7662258 7662257 - SEVERIN-2 1952 0.0727 (217/2984) 0 * * Os_TE_658790 Chr11 7652495 7652496 + ORSgTEMT00600376 329 0.0003 (1/2989) 0 * Os_TE_658789 Os_TE_658789 Chr11 7652490 7652489 + ORSgTEMT00600272 361 0.0003 (1/2985) 0 * Os_TE_658790 Os_TE_658765 Chr11 7637152 7637151 - COPIA2-LTR_OS 6433 0.5301 (1586/2992) 0 * * Os_TE_658757 Chr11 7635374 7635373 + AMYLTP 383 0.0027 (7/2617) 0 * * Os_TE_658742 Chr11 7633803 7633804 - COPIA2-LTR_OS 6433 0.0003 (1/2873) 0 * Os_TE_658741 Os_TE_658741 Chr11 7633799 7633798 + COPIA2-LTR_OS 6433 0.0003 (1/2886) 0 * Os_TE_658742 Os_TE_658728 Chr11 7630461 7630462 - RIREX_LTR 8828 0.0003 (1/2942) 0 * Os_TE_658727 Os_TE_658727 Chr11 7630457 7630456 + RIREX_LTR 8828 0.0003 (1/2962) 0 * Os_TE_658728 Os_TE_658720 Chr11 7626743 7626742 - COPI2_LTR 4733 0.0900 (254/2821) 0 * * Os_TE_658659 Chr11 7601871 7601872 + ORSiTERTOOT00296 5553 0.0003 (1/2972) 0 * Os_TE_658658 Os_TE_658658 Chr11 7601867 7601866 - SC-3_LTR 5748 0.0003 (1/2976) 0 * Os_TE_658659 Os_TE_658657 Chr11 7599711 7599712 - SC-8_LTR 4951 0.0003 (1/2972) 0 * Os_TE_658656 Os_TE_658656 Chr11 7599707 7599706 + SC-8_LTR 4951 0.0003 (1/2973) 0 * Os_TE_658657 Os_TE_658644 Chr11 7593909 7593910 + SPMLIKE 10989 0.0010 (3/2983) 0 * Os_TE_658643 Os_TE_658643 Chr11 7593907 7593906 - ORSgTETN00200001 10994 0.0003 (1/2922) 0 * Os_TE_658644 Os_TE_658626 Chr11 7590045 7590044 - ORSgTEMT01601493 303 0.0003 (1/2981) 0 * Os_TE_658625 Os_TE_658625 Chr11 7590042 7590043 - ORSgTEMT01601432 239 0.0007 (2/2978) 0 * Os_TE_658626 Os_TE_658614 Chr11 7586897 7586898 - SC-3_LTR 5748 0.0007 (2/2969) 0 * Os_TE_658613 Os_TE_658613 Chr11 7586893 7586892 + ORSiTERTOOT00296 5553 0.0007 (2/2969) 0 * Os_TE_658614 Os_TE_658605 Chr11 7583061 7577531 + RETRO2_LTR 12874 0.3903 (1122/2875) 1 Intact * Os_TE_658576 Chr11 7569630 7569629 + HARB-N1_OS 2589 0.0007 (2/2952) 0 * * Os_TE_658565 Chr11 7554089 7565007 - ORSgTETN00200001 10994 0.3631 (961/2647) 1 Intact * Os_TE_658552 Chr11 7551683 7551684 + ORSiTEMT00300001 383 0.0057 (17/2972) 0 * * Os_TE_658524 Chr11 7541051 7541052 - RETRO1_LTR 8314 0.0007 (2/2965) 0 * * Os_TE_658507 Chr11 7533166 7533167 - COPIA2-LTR_OS 6433 0.0010 (3/2981) 0 * Os_TE_658506 Os_TE_658506 Chr11 7533162 7533161 + COPIA2-LTR_OS 6433 0.0010 (3/2982) 0 * Os_TE_658507 Os_TE_658505 Chr11 7532162 7532161 + ORSgTEMT01600726 235 0.0007 (2/2923) 0 * * Os_TE_658497 Chr11 7526645 7526646 + ORSiTERTOOT00296 5553 0.0003 (1/2957) 0 * Os_TE_658496 Os_TE_658496 Chr11 7526641 7526640 - SC-3_LTR 5748 0.0003 (1/2954) 0 * Os_TE_658497 Os_TE_658485 Chr11 7515359 7515360 - SC-3_LTR 5748 0.0003 (1/2987) 0 * Os_TE_658484 Os_TE_658484 Chr11 7515355 7515354 + ORSiTERTOOT00296 5553 0.0003 (1/2991) 0 * Os_TE_658485 Os_TE_658465 Chr11 7508203 7508202 - RETROSAT5_LTR 13878 0.0013 (4/2997) 0 * * Os_TE_658457 Chr11 7506491 7506492 - RETRO2_LTR 12874 0.0050 (15/2992) 0 * Os_TE_658456 Os_TE_658456 Chr11 7506487 7506486 + RETRO2_LTR 12874 0.0047 (14/2992) 0 * Os_TE_658457 Os_TE_658450 Chr11 7505262 7505261 - COPIA2-LTR_OS 6433 0.0004 (1/2351) 0 * * Os_TE_658449 Chr11 7504540 7504539 - ORSgTEMT00500512 153 0.0007 (2/2948) 0 * * Os_TE_658441 Chr11 7502414 7502415 + ORSiTERTOOT00291 11421 0.8723 (2603/2984) 0 * * Os_TE_658411 Chr11 7495664 7495665 - JOUZHENA 607 0.0007 (2/2897) 0 * Os_TE_658410 Os_TE_658410 Chr11 7495657 7495656 + JOUZHENA 607 0.0007 (2/2891) 0 * Os_TE_658411 Os_TE_658409 Chr11 7495628 7495629 + MPING 430 0.0007 (2/2919) 0 * Os_TE_658408 Os_TE_658408 Chr11 7495626 7495625 - MPING 430 0.0007 (2/2924) 0 * Os_TE_658409 Os_TE_658377 Chr11 7487982 7487983 - MPING 430 0.0007 (2/2891) 0 * Os_TE_658376 Os_TE_658376 Chr11 7487980 7487979 + MPING 430 0.0007 (2/2886) 0 * Os_TE_658377 Os_TE_658375 Chr11 7487779 7487780 - RIRE2_LTR 11306 0.0141 (42/2975) 0 * Os_TE_658374 Os_TE_658374 Chr11 7487775 7487774 - ORSgTERT00201216 11284 0.0138 (41/2969) 0 * Os_TE_658375 Os_TE_658372 Chr11 7487422 7487421 + DS-RICE4N 715 0.0037 (11/2992) 0 * * Os_TE_658371 Chr11 7487027 7487028 - RETROSAT2LTR 12796 0.0847 (253/2986) 0 * * Os_TE_658364 Chr11 7484104 7484105 - ORSgTEMT02400179 221 0.0003 (1/2943) 0 * Os_TE_658363 Os_TE_658363 Chr11 7484103 7484102 - TYPEM 227 0.0003 (1/2947) 0 * Os_TE_658364 Os_TE_658326 Chr11 7475800 7475801 + RIREX_LTR 8828 0.0007 (2/2870) 0 * * Os_TE_658309 Chr11 7473143 7473142 + ORSgTEMT01601591 242 0.0007 (2/2980) 0 * Os_TE_658308 Os_TE_658308 Chr11 7473140 7473141 + ORSgTEMT01601591 242 0.0010 (3/2986) 0 * Os_TE_658309 Os_TE_658296 Chr11 7471776 7471777 + INDITTO 263 0.3084 (864/2802) 0 * Os_TE_658295 Os_TE_658295 Chr11 7471774 7471773 - INDITTO 263 0.3151 (920/2920) 0 * Os_TE_658296 Os_TE_658293 Chr11 7471733 7464124 + MuDR4_OS 7610 0.3908 (1127/2884) 1 Intact Os_TE_658292 Os_TE_658292 Chr11 7464123 7471732 - MuDR4_OS 7610 0.3551 (1029/2898) 1 Intact Os_TE_658293 Os_TE_658266 Chr11 7443619 7443618 - COPIA2-LTR_OS 6433 0.0027 (8/2974) 0 * * Os_TE_658245 Chr11 7437681 7437680 + STOWAWAY51_OS 246 0.0031 (9/2940) 0 * Os_TE_658244 Os_TE_658244 Chr11 7437675 7437676 + ORSgTEMT01601591 242 0.0027 (8/2934) 0 * Os_TE_658245 Os_TE_658243 Chr11 7436038 7436039 - Cassandra_OS-LTR 764 0.0007 (2/2997) 0 * * Os_TE_658241 Chr11 7435645 7435646 + OsSN3 183 0.0030 (9/2988) 0 * * Os_TE_658240 Chr11 7435574 7435575 - DNAUN1_OS 408 0.0040 (12/2998) 0 * * Os_TE_658204 Chr11 7414931 7414930 + ORSiTERTOOT00034 791 0.0003 (1/2905) 0 * * Os_TE_658096 Chr11 7359677 7359676 + CACTA-B 1103 0.0215 (64/2979) 0 * Os_TE_658095 Os_TE_658095 Chr11 7359676 7359677 - ORSgTETN00200001 10994 0.0251 (75/2990) 0 * Os_TE_658096 Os_TE_658090 Chr11 7352242 7352243 + RETROSAT2LTRA 3112 0.2070 (559/2700) 0 * * Os_TE_658084 Chr11 7349699 7349700 + RETROSAT2LTR 12796 0.3699 (1097/2966) 0 * Os_TE_658083 Os_TE_658083 Chr11 7349697 7349696 - RETROSAT2LTR 12796 0.3778 (1130/2991) 0 * Os_TE_658084 Os_TE_658032 Chr11 7332525 7332526 - COPIA2-LTR_OS 6433 0.0003 (1/2978) 0 * Os_TE_658031 Os_TE_658031 Chr11 7332521 7332520 + COPIA2-LTR_OS 6433 0.0003 (1/2954) 0 * Os_TE_658032 Os_TE_658026 Chr11 7331496 7331495 + ORSgTEMT00300064 397 0.0061 (18/2965) 0 * * Os_TE_658022 Chr11 7329545 7329546 + ORSgTEMT00600272 361 0.0003 (1/2988) 0 * * Os_TE_658021 Chr11 7329442 7329443 + COPI2_LTR 4733 0.0017 (5/2978) 0 * Os_TE_658020 Os_TE_658020 Chr11 7329438 7329437 - COPI2_LTR 4733 0.0017 (5/2993) 0 * Os_TE_658021 Os_TE_658017 Chr11 7328390 7328389 - ORSgTEMT01600639 228 0.0226 (67/2959) 0 * * Os_TE_658014 Chr11 7327790 7327791 - ORSgTEMT01601208 238 0.0294 (84/2857) 0 * * Os_TE_658012 Chr11 7327715 7327716 + STOWAWAY11_OS 292 0.4198 (1257/2994) 0 * * Os_TE_657999 Chr11 7320266 7320265 - ORSgTEMT00500578 129 0.0049 (8/1631) 0 * Os_TE_657998 Os_TE_657998 Chr11 7320264 7320265 + ORSgTEMT00501786 149 0.0025 (7/2812) 0 * Os_TE_657999 Os_TE_657992 Chr11 7319521 7319522 + ORSgTEMT00100272 356 0.0244 (43/1761) 0 * * Os_TE_657982 Chr11 7316463 7317150 - GYPSY-B_LTR 7068 0.5842 (1658/2838) 1 Solo_LTR * Os_TE_657979 Chr11 7315922 7315923 + ORSgTEMT01602181 239 0.4301 (1242/2888) 0 * * Os_TE_657958 Chr11 7278635 7278636 + CASTAWAY-3 314 0.0083 (23/2755) 0 * * Os_TE_657957 Chr11 7278597 7278596 + SEVERIN-2 1952 0.2728 (764/2801) 0 * * Os_TE_657954 Chr11 7278258 7278257 - RIRE2_LTR 11306 0.3135 (516/1646) 0 * * Os_TE_657928 Chr11 7271552 7271553 + TRUNCATOR2_LTR 2904 0.0013 (2/1514) 0 * * Os_TE_657926 Chr11 7270853 7270854 + ORSgTETNOOT01242 259 0.0394 (117/2969) 0 * Os_TE_657925 Os_TE_657925 Chr11 7270850 7270849 + ORSgTETNOOT02577 232 0.0440 (131/2974) 0 * Os_TE_657926 Os_TE_657919 Chr11 7269611 7269612 - SZ-48LTR 3632 0.0259 (77/2978) 0 * Os_TE_657918 Os_TE_657918 Chr11 7269607 7269606 - Cassandra_OS-LTR 764 0.0385 (87/2257) 0 * Os_TE_657919 Os_TE_657917 Chr11 7269287 7269286 - CLOUD-7 495 0.0291 (87/2988) 0 * * Os_TE_657901 Chr11 7264256 7265684 - RPO_OS 1983 0.5605 (1538/2744) 1 Intact * Os_TE_657887 Chr11 7255335 7255336 + RIREX_LTR 8828 0.0003 (1/2921) 0 * * Os_TE_657857 Chr11 7247760 7247759 + ORSgTEMT01600726 235 0.0007 (2/2699) 0 * * Os_TE_657849 Chr11 7242831 7242832 + ENSPM4_OS 11610 0.2367 (674/2848) 0 * * Os_TE_657848 Chr11 7242633 7242634 + STOWAWAY18_OS 216 0.0003 (1/2917) 0 * * Os_TE_657827 Chr11 7228454 7228453 + COWARD 200 0.0019 (5/2571) 0 * * Os_TE_657814 Chr11 7221085 7221086 + ORSgTETNOOT00908 242 0.3168 (944/2980) 0 * Os_TE_657813 Os_TE_657813 Chr11 7221083 7221082 - ORSiTEMT01000008 242 0.0005 (1/2093) 0 * Os_TE_657814 Os_TE_657811 Chr11 7220964 7220963 + ORSgTEMT00600287 363 0.0030 (9/2986) 0 * * Os_TE_657804 Chr11 7217078 7217079 - RIREX_LTR 8828 0.0179 (51/2856) 0 * * Os_TE_657782 Chr11 7208423 7208422 - ORSgTEMT02400246 177 0.3343 (992/2967) 0 * * Os_TE_657781 Chr11 7207794 7207795 + ORSiTERTOOT00296 5553 0.0007 (2/2979) 0 * Os_TE_657780 Os_TE_657780 Chr11 7207790 7207789 - SC-3_LTR 5748 0.0007 (2/2979) 0 * Os_TE_657781 Os_TE_657751 Chr11 7199545 7199544 - SEVERIN-2 1952 0.0003 (1/2992) 0 * * Os_TE_657743 Chr11 7192790 7192791 + ORSgTEMT01601122 212 0.0003 (1/2957) 0 * * Os_TE_657741 Chr11 7191972 7190492 + MERMITE18C 1473 0.1762 (525/2979) 1 Intact Os_TE_657740 Os_TE_657740 Chr11 7190490 7191972 + MERMITE18C 1473 0.1779 (530/2979) 1 Intact Os_TE_657741 Os_TE_657738 Chr11 7190141 7189842 - ORSgTEMT04200023 393 0.1829 (533/2914) 1 Intact * Os_TE_657736 Chr11 7189808 7189809 + STOWAWAY41_OS 264 0.8278 (2423/2927) 0 * * Os_TE_657734 Chr11 7189505 7177909 + ENSPM4_OS 11610 0.1689 (491/2907) 1 Intact Os_TE_657691 Os_TE_657691 Chr11 7177908 7189505 - ENSPM4_OS 11610 0.1835 (542/2953) 1 Intact Os_TE_657734 Os_TE_657687 Chr11 7177196 7177459 - ORSgTEMT00101174 225 0.1793 (530/2956) 1 Intact * Os_TE_657679 Chr11 7175547 7175401 + ORSgTEMT00501035 149 0.8925 (2649/2968) 1 Intact Os_TE_657676 Os_TE_657676 Chr11 7175397 7175540 - ORSgTEMT00501204 149 0.8941 (2668/2984) 1 Intact Os_TE_657679 Os_TE_657662 Chr11 7159762 7159761 - STOWAWAY11_OS 292 0.2466 (720/2920) 0 * * Os_TE_657654 Chr11 7158448 7158449 - ORSgTETN00200001 10994 0.4066 (1029/2531) 0 * Os_TE_657653 Os_TE_657653 Chr11 7158446 7158445 + SPMLIKE 10989 0.4650 (1284/2761) 0 * Os_TE_657654 Os_TE_657651 Chr11 7158315 7158316 - ORSgTEMT01601208 238 0.2487 (682/2742) 0 * * Os_TE_657630 Chr11 7147192 7147193 + ORSgTETNOOT00323 125 0.4860 (1406/2893) 0 * Os_TE_657629 Os_TE_657629 Chr11 7147191 7147190 + ORSgTEMT00500095 150 0.4952 (1447/2922) 0 * Os_TE_657630 Os_TE_657625 Chr11 7145850 7145849 - ORSgTEMT00501443 152 0.2526 (727/2878) 0 * Os_TE_657624 Os_TE_657624 Chr11 7145848 7145849 + ORSgTEMT00500201 140 0.2567 (748/2914) 0 * Os_TE_657625 Os_TE_657622 Chr11 7143866 7143867 - ORSgTEMT06100010 269 0.0003 (1/2958) 0 * * Os_TE_657620 Chr11 7143218 7132558 - MuDR3_OS 8604 0.1531 (451/2946) 1 Intact Os_TE_657617 Os_TE_657617 Chr11 7132555 7143218 - MuDR3_OS 8604 0.1464 (428/2923) 1 Intact Os_TE_657620 Os_TE_657614 Chr11 7132036 7132035 - ORSgTETNOOT00754 253 0.0003 (1/2961) 0 * * Os_TE_657604 Chr11 7130091 7130092 + RETROSAT2LTR 12796 0.0050 (15/2971) 0 * * Os_TE_657603 Chr11 7129968 7129967 - ORSgTEMT00101588 319 0.0007 (2/2922) 0 * * Os_TE_657601 Chr11 7129359 7129360 - TELIA 141 0.0031 (9/2942) 0 * * Os_TE_657598 Chr11 7128176 7127901 + ORSgTEMT05000092 279 0.4672 (1297/2776) 1 Intact * Os_TE_657581 Chr11 7115141 7115140 + TRUNCATOR2_LTR 2904 0.0017 (5/2986) 0 * * Os_TE_657576 Chr11 7113976 7113977 - BAJIELTR 4500 0.0017 (5/2992) 0 * * Os_TE_657573 Chr11 7113497 7113496 + SZ-4_LTR 5991 0.0007 (2/2987) 0 * * Os_TE_657570 Chr11 7110256 7110257 - MPING 430 0.0171 (51/2984) 0 * Os_TE_657569 Os_TE_657569 Chr11 7110254 7110253 + MPING 430 0.0168 (50/2985) 0 * Os_TE_657570 Os_TE_657568 Chr11 7109065 7109066 + MPING 430 0.0074 (22/2991) 0 * Os_TE_657567 Os_TE_657567 Chr11 7109063 7109062 - MPING 430 0.0074 (22/2990) 0 * Os_TE_657568 Os_TE_657553 Chr11 7104141 7104142 + COPIA2-LTR_OS 6433 0.0013 (4/2973) 0 * Os_TE_657552 Os_TE_657552 Chr11 7104137 7104136 - COPIA2-LTR_OS 6433 0.0013 (4/2984) 0 * Os_TE_657553 Os_TE_657544 Chr11 7100470 7100708 - ORSgTEMT01600443 272 0.3007 (898/2986) 1 Intact * Os_TE_657543 Chr11 7098978 7098977 + TREP220 109 0.7204 (2139/2969) 0 * Os_TE_657542 Os_TE_657542 Chr11 7098975 7098976 - STOWAWAY47_OS 148 0.7111 (2104/2959) 0 * Os_TE_657543 Os_TE_657532 Chr11 7097703 7097702 - ORSgTEMT00100921 319 0.7142 (2122/2971) 0 * * Os_TE_657528 Chr11 7097396 7097395 - STOWAWAY51_OS 246 0.0004 (1/2681) 0 * * Os_TE_657520 Chr11 7095250 7095249 + ORSgTEMT01400032 215 0.4031 (628/1558) 0 * Os_TE_657519 Os_TE_657519 Chr11 7095244 7095245 - ORSgTEMT01400011 212 0.6744 (1858/2755) 0 * Os_TE_657520 Os_TE_657518 Chr11 7094891 7094892 - RETRO1_LTR 8314 0.0460 (133/2893) 0 * Os_TE_657517 Os_TE_657517 Chr11 7094887 7094886 + RETRO2A_LTR 12895 0.0456 (132/2897) 0 * Os_TE_657518 Os_TE_657506 Chr11 7092222 7092223 - STOWAWAY1_OS 149 0.0004 (1/2386) 0 * * Os_TE_657498 Chr11 7091301 7091302 - ORSgTETN00200001 10994 0.0017 (5/2970) 0 * Os_TE_657497 Os_TE_657497 Chr11 7091299 7091298 + SPMLIKE 10989 0.0017 (5/2971) 0 * Os_TE_657498 Os_TE_657473 Chr11 7081387 7081388 + MERMITE18E 1528 0.0015 (4/2668) 0 * * Os_TE_657456 Chr11 7072828 7072827 - ORSgTETNOOT01072 229 0.0003 (1/2985) 0 * * Os_TE_657451 Chr11 7071779 7071780 + AMYLTP 383 0.0191 (57/2992) 0 * * Os_TE_657441 Chr11 7063067 7063066 - ORSiTETNOOT00200 3563 0.0905 (227/2507) 0 * * Os_TE_657436 Chr11 7060942 7060941 + SPMLIKE 10989 0.0077 (23/2985) 0 * * Os_TE_657416 Chr11 7055090 7055091 + SPMLIKE 10989 0.0407 (119/2921) 0 * Os_TE_657415 Os_TE_657415 Chr11 7055088 7055087 - ORSgTETN00200001 10994 0.0410 (120/2930) 0 * Os_TE_657416 Os_TE_657413 Chr11 7054873 7054874 + RETRO2_LTR 12874 0.0108 (32/2951) 0 * * Os_TE_657405 Chr11 7054153 7054152 + OSTE20 496 0.0014 (4/2834) 0 * * Os_TE_657399 Chr11 7052847 7052846 + RETROSAT4_LTR 13504 0.0207 (61/2942) 0 * * Os_TE_657376 Chr11 7048903 7048904 - SINE9_OS 293 0.2138 (622/2909) 0 * * Os_TE_657374 Chr11 7048371 7041218 - RIREX_LTR 8828 0.0160 (47/2939) 1 Intact Os_TE_657365 Os_TE_657365 Chr11 7041218 7048371 + RIREX_LTR 8828 0.0160 (47/2937) 1 Intact Os_TE_657374 Os_TE_657360 Chr11 7039948 7039947 - ORSgTEMT00101174 225 0.0003 (1/2914) 0 * Os_TE_657359 Os_TE_657359 Chr11 7039947 7039948 - STOWAWAY10_OS 259 0.0003 (1/2935) 0 * Os_TE_657360 Os_TE_657343 Chr11 7026478 7029801 - SZ-40LTR 2465 0.0152 (45/2958) 1 Intact * Os_TE_657336 Chr11 7024433 7024434 - COPI2_LTR 4733 0.0003 (1/2986) 0 * Os_TE_657335 Os_TE_657335 Chr11 7024429 7024428 + COPI2_LTR 4733 0.0003 (1/2981) 0 * Os_TE_657336 Os_TE_657327 Chr11 7022636 7019640 + TRUNCATOR 2918 0.3049 (911/2988) 1 Intact Os_TE_657321 Os_TE_657321 Chr11 7019635 7022636 - TRUNCATOR 2918 0.2863 (839/2931) 1 Intact Os_TE_657327 Os_TE_657316 Chr11 7015790 7015400 - TYPEU1 380 0.7738 (1953/2524) 1 Intact Os_TE_657315 Os_TE_657315 Chr11 7015400 7015790 + TYPEU4 402 0.7377 (2199/2981) 1 Intact Os_TE_657316 Os_TE_657308 Chr11 7011652 7011651 - F770 284 0.0007 (2/2929) 0 * * Os_TE_657305 Chr11 7011381 7011242 + ORSgTEMT00500201 140 0.6605 (1922/2910) 1 Intact * Os_TE_657288 Chr11 7007377 7007378 - COPI2_LTR 4733 0.0027 (8/2994) 0 * * Os_TE_657277 Chr11 7001445 7001444 - SZ-40LTR 2465 0.0599 (179/2990) 0 * * Os_TE_657276 Chr11 7001271 7001272 + RETROSAT4_LTR 13504 0.0003 (1/2994) 0 * Os_TE_657275 Os_TE_657275 Chr11 7001267 7001266 - SZ-35LTR 3853 0.0003 (1/2995) 0 * Os_TE_657276 Os_TE_657258 Chr11 6981283 6999193 + MuDR-5_OS 17471 0.7124 (1964/2757) 1 Intact * Os_TE_657256 Chr11 6979658 6979659 - COPIA1-LTR_OS 9292 0.0004 (1/2831) 0 * * Os_TE_657234 Chr11 6969770 6969771 - COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_657233 Os_TE_657233 Chr11 6969766 6969765 + COPI2_LTR 4733 0.0003 (1/2997) 0 * Os_TE_657234 Os_TE_657231 Chr11 6969678 6969679 - INDITTO 263 0.0172 (51/2973) 0 * Os_TE_657230 Os_TE_657230 Chr11 6969676 6969675 + INDITTO 263 0.0174 (52/2995) 0 * Os_TE_657231 Os_TE_657227 Chr11 6968948 6968947 - STOWAWAY11_OS 292 0.2002 (594/2967) 0 * * Os_TE_657226 Chr11 6968489 6968490 + STOWAWAY47_OS 148 0.1959 (577/2946) 0 * * Os_TE_657225 Chr11 6968313 6968113 - ORSgTETNOOT01600 224 0.7761 (1938/2497) 1 Intact * Os_TE_657213 Chr11 6965536 6965535 + RETRO2A_LTR 12895 0.2017 (575/2851) 0 * * Os_TE_657212 Chr11 6964931 6964932 + ORSgTETNOOT00906 136 0.1265 (361/2854) 0 * * Os_TE_657211 Chr11 6964910 6964911 + ORSgTETNOOT02179 137 0.1600 (470/2938) 0 * * Os_TE_657209 Chr11 6964904 6964905 + ORSgTEMT00500201 140 0.1619 (478/2952) 0 * * Os_TE_657208 Chr11 6964810 6964809 + ORSgTEMT01701104 154 0.2428 (596/2455) 0 * * Os_TE_657192 Chr11 6960045 6948974 + ENSPM4_OS 11610 0.0301 (90/2993) 0.92 Intact Os_TE_657187 Os_TE_657187 Chr11 6948974 6960044 - ENSPM4_OS 11610 0.0318 (95/2990) 1 Intact Os_TE_657192 Os_TE_657186 Chr11 6948675 6948676 - ORSgTERT00201216 11284 0.0007 (2/2990) 0 * Os_TE_657185 Os_TE_657185 Chr11 6948671 6948670 - RIRE2_LTR 11306 0.0007 (2/2993) 0 * Os_TE_657186 Os_TE_657182 Chr11 6946535 6946534 - TRUNCATOR2_LTR 2904 0.0412 (123/2988) 0 * * Os_TE_657177 Chr11 6944335 6944334 - TRUNCATOR 2918 0.2808 (734/2614) 0 * * Os_TE_657175 Chr11 6944278 6944279 - SZ-48LTR 3632 0.0007 (2/2870) 0 * * Os_TE_657167 Chr11 6942694 6942548 - ORSgTEMT00500081 146 0.6352 (1405/2212) 1 Intact Os_TE_657165 Os_TE_657165 Chr11 6942546 6942694 + ORSgTEMT00500260 149 0.6591 (1547/2347) 1 Intact Os_TE_657167 Os_TE_657157 Chr11 6939689 6939690 + TNR2A 152 0.0019 (3/1603) 0 * * Os_TE_657156 Chr11 6939036 6939035 + ORSgTEMT00501279 126 0.0046 (3/655) 0 * * Os_TE_657145 Chr11 6937173 6937174 - ORSgTEMT01601432 239 0.0011 (3/2655) 0 * * Os_TE_657136 Chr11 6934842 6934841 - ORSiTERTOOT00339 13842 0.0010 (3/2980) 0 * * Os_TE_657134 Chr11 6934803 6934802 + ENSPM4_OS 11610 0.0010 (3/2985) 0 * * Os_TE_657132 Chr11 6934796 6934795 + RIREX_LTR 8828 0.0007 (2/2984) 0 * * Os_TE_657121 Chr11 6933062 6933061 + RETROSAT2LTR 12796 0.0647 (160/2472) 0 * * Os_TE_657119 Chr11 6932699 6932700 - RETROSAT2LTR 12796 0.0064 (19/2984) 0 * * Os_TE_657104 Chr11 6925238 6924864 + TYPEU4 402 0.7139 (1729/2422) 1 Intact * Os_TE_657092 Chr11 6923283 6923282 - RETROSAT2LTRA 3112 0.0171 (50/2917) 0 * * Os_TE_657090 Chr11 6922368 6922369 - COPIA2-LTR_OS 6433 0.0003 (1/2906) 0 * Os_TE_657089 Os_TE_657089 Chr11 6922364 6922363 + COPIA2-LTR_OS 6433 0.0003 (1/2965) 0 * Os_TE_657090 Os_TE_657087 Chr11 6921726 6921334 + TYPEU4 402 0.5896 (1744/2958) 1 Intact Os_TE_657086 Os_TE_657086 Chr11 6921334 6921726 - TYPEU1 380 0.5881 (1755/2984) 1 Intact Os_TE_657087 Os_TE_657084 Chr11 6921017 6921016 + QINNIU 528 0.2011 (597/2968) 0 * * Os_TE_657078 Chr11 6919790 6919789 - ORSgTEMT01602404 253 0.0003 (1/2911) 0 * Os_TE_657077 Os_TE_657077 Chr11 6919787 6919788 - ORSgTEMT01601696 238 0.0007 (2/2898) 0 * Os_TE_657078 Os_TE_657067 Chr11 6918075 6918074 - MIDWAY 985 0.0195 (58/2981) 0 * * Os_TE_657063 Chr11 6916760 6917419 - OSTE24 683 0.0171 (51/2975) 1 Intact * Os_TE_657062 Chr11 6916216 6916215 + SEVERIN-2 1952 0.0829 (246/2969) 0 * * Os_TE_657057 Chr11 6912112 6912113 - COPIA1-LTR_OS 9292 0.1811 (535/2954) 0 * Os_TE_657056 Os_TE_657056 Chr11 6912110 6912109 + SZ-5LTR 1223 0.1937 (579/2989) 0 * Os_TE_657057 Os_TE_657055 Chr11 6911951 6911952 - ORSgTETN00200001 10994 0.0338 (99/2928) 0 * Os_TE_657054 Os_TE_657054 Chr11 6911949 6911948 + SPMLIKE 10989 0.0387 (114/2943) 0 * Os_TE_657055 Os_TE_657053 Chr11 6911916 6911917 + SPMLIKE 10989 0.0051 (15/2941) 0 * Os_TE_657052 Os_TE_657052 Chr11 6911914 6911913 - ORSgTETN00200001 10994 0.0068 (20/2920) 0 * Os_TE_657053 Os_TE_657040 Chr11 6900252 6911251 - ORSgTETN00200001 10994 0.8939 (59/66) 1 Intact * Os_TE_657036 Chr11 6897456 6897455 + OsSN3 183 0.0051 (8/1580) 0 * * Os_TE_657035 Chr11 6897229 6897230 - TWIFB1 3737 0.2333 (293/1256) 0 * Os_TE_657034 Os_TE_657034 Chr11 6897222 6897221 + TWIFB1 3737 0.3773 (578/1532) 0 * Os_TE_657035 Os_TE_657033 Chr11 6897215 6897216 - MERMITED 1572 0.2566 (428/1668) 0 * * Os_TE_657017 Chr11 6887786 6887787 - MuDR4_OS 7610 0.1207 (245/2030) 0 * * Os_TE_657014 Chr11 6887715 6887714 + TRUNCATOR2_LTR 2904 0.0568 (115/2026) 0 * * Os_TE_657012 Chr11 6887480 6887481 - ENSPM4_OS 11610 0.0007 (2/2683) 0 * * Os_TE_657004 Chr11 6881713 6881714 - MUDROS1 4932 0.2926 (811/2772) 0 * Os_TE_657003 Os_TE_657003 Chr11 6881705 6881704 + CLOUD-3 550 0.2954 (822/2783) 0 * Os_TE_657004 Os_TE_656964 Chr11 6851095 6851096 + RIRE2_LTR 11306 0.5164 (63/122) 0 * * Os_TE_656961 Chr11 6850638 6850832 - ORSgTEMT02000040 196 0.4545 (55/121) 1 Intact * Os_TE_656943 Chr11 6833478 6833479 - TNR3 1536 0.8022 (1184/1476) 0.41 * * Os_TE_656940 Chr11 6833323 6833324 + MUDRN2_OS 756 0.1961 (30/153) 0 * * Os_TE_656861 Chr11 6784223 6777264 - RIREX_LTR 8828 0.4733 (62/131) 1 Intact Os_TE_656857 Os_TE_656857 Chr11 6777264 6784223 + RIREX_LTR 8828 0.4651 (60/129) 1 Intact Os_TE_656861 Os_TE_656705 Chr11 6727279 6751768 - RIRE2_LTR 11306 0.0723 (126/1743) 1 Intact * Os_TE_656691 Chr11 6722174 6725406 + TRUNCATOR2_LTR 2904 0.4500 (54/120) 1 Intact * Os_TE_656661 Chr11 6707371 6707370 - KRISPIE 956 0.0308 (46/1492) 0 * * Os_TE_656622 Chr11 6682260 6682261 + SZ-48LTR 3632 0.0036 (2/555) 0 * Os_TE_656621 Os_TE_656621 Chr11 6682256 6682255 - SZ-48LTR 3632 0.0036 (2/556) 0 * Os_TE_656622 Os_TE_656606 Chr11 6676526 6676527 + RIREX_LTR 8828 0.0040 (7/1755) 0 * Os_TE_656605 Os_TE_656605 Chr11 6676522 6676521 - RIREX_LTR 8828 0.0040 (7/1745) 0 * Os_TE_656606 Os_TE_656582 Chr11 6671935 6673088 + RPO_OS 1983 0.7342 (1312/1787) 1 Intact * Os_TE_656581 Chr11 6671537 6671538 + OLO24 345 0.2545 (463/1819) 0 * * Os_TE_656580 Chr11 6671247 6670622 + OSTE30 529 0.7257 (1529/2107) 0.5 Intact * Os_TE_656559 Chr11 6665800 6665801 + COPIA2-LTR_OS 6433 0.0010 (2/1991) 0 * * Os_TE_656553 Chr11 6665303 6665304 - SZLTR 1249 0.1511 (301/1992) 0 * Os_TE_656552 Os_TE_656552 Chr11 6665299 6665298 + SZLTR 1249 0.1487 (295/1984) 0 * Os_TE_656553 Os_TE_656545 Chr11 6663786 6663785 + SPMLIKE 10989 0.0022 (6/2759) 0 * * Os_TE_656529 Chr11 6659760 6659761 - COPIA2-LTR_OS 6433 0.0003 (1/2865) 0 * Os_TE_656528 Os_TE_656528 Chr11 6659756 6659755 + COPIA2-LTR_OS 6433 0.0004 (1/2851) 0 * Os_TE_656529 Os_TE_656527 Chr11 6659642 6659643 - SZ-55_LTR 10318 0.2937 (816/2778) 0 * * Os_TE_656516 Chr11 6653838 6653837 + ORSgTEMT00101116 321 0.0042 (9/2120) 0 * * Os_TE_656515 Chr11 6653802 6653803 - RIREX_LTR 8828 0.0006 (1/1730) 0 * * Os_TE_656514 Chr11 6652968 6652969 + TOS17LTR 138 0.0008 (2/2419) 0 * Os_TE_656513 Os_TE_656513 Chr11 6652964 6652963 - TOS17LTR 138 0.0008 (2/2553) 0 * Os_TE_656514 Os_TE_656510 Chr11 6652484 6652340 - TNR2A 152 0.6084 (1457/2395) 1 Intact * Os_TE_656501 Chr11 6650467 6650466 + ORSiTERT00100063 7723 0.0336 (100/2979) 0 * * Os_TE_656499 Chr11 6648775 6648774 + NDNA1TNA_OS 334 0.1137 (340/2990) 0 * Os_TE_656498 Os_TE_656498 Chr11 6648774 6648775 + ORSgTEMT00100531 325 0.1121 (335/2988) 0 * Os_TE_656499 Os_TE_656496 Chr11 6648368 6648266 + TREP219 104 0.8431 (2326/2759) 1 Intact * Os_TE_656493 Chr11 6648141 6648140 + CASTAWAY 364 0.0022 (6/2777) 0 * Os_TE_656492 Os_TE_656492 Chr11 6648132 6648133 - ORSgTEMT00600085 364 0.0021 (6/2791) 0 * Os_TE_656493 Os_TE_656491 Chr11 6647986 6647837 - ORSgTEMT00501911 152 0.8421 (2346/2786) 1 Intact Os_TE_656488 Os_TE_656488 Chr11 6647835 6647986 - ORSgTEMT00500439 153 0.8511 (2532/2975) 1 Intact Os_TE_656491 Os_TE_656457 Chr11 6638146 6638145 + COWARD-3 221 0.0022 (6/2741) 0 * * Os_TE_656454 Chr11 6637499 6637500 - ORSiTETNOOT00200 3563 0.0496 (120/2420) 0 * * Os_TE_656452 Chr11 6637328 6637329 + TWIF 586 0.0004 (1/2721) 0 * Os_TE_656451 Os_TE_656451 Chr11 6637321 6637320 - ORSiTETNOOT00209 3624 0.0004 (1/2650) 0 * Os_TE_656452 Os_TE_656433 Chr11 6626378 6626379 + RETROSAT4_LTR 13504 0.1620 (373/2303) -1 * Os_TE_656432 Os_TE_656432 Chr11 6626374 6626373 - SZ-35LTR 3853 0.1743 (404/2318) -1 * Os_TE_656433 Os_TE_656431 Chr11 6623750 6623749 + TRUNCATOR 2918 0.1078 (254/2357) -1 * Os_TE_656430 Os_TE_656430 Chr11 6623749 6623750 - TRUNCATOR 2918 0.1008 (236/2342) -1 * Os_TE_656431 Os_TE_656426 Chr11 6621964 6621965 + COPI2_LTR 4733 0.0082 (19/2315) -1 * Os_TE_656425 Os_TE_656425 Chr11 6621960 6621959 - COPI2_LTR 4733 0.0095 (22/2317) -1 * Os_TE_656426 Os_TE_656407 Chr11 6617447 6617446 - ORSgTEMT00100865 348 0.1095 (198/1809) -1 * * Os_TE_656402 Chr11 6616095 6616096 + TWIFBIG 3567 0.0751 (116/1545) -1 * Os_TE_656401 Os_TE_656401 Chr11 6616088 6616087 - ORSiTETNOOT00216 3569 0.0043 (10/2340) 0 * Os_TE_656402 Os_TE_656373 Chr11 6601068 6601069 - OSR3_LTR 5201 0.0003 (1/2980) 0 * Os_TE_656372 Os_TE_656372 Chr11 6601064 6601063 + OSR3_LTR 5201 0.0007 (2/2984) 0 * Os_TE_656373 Os_TE_656371 Chr11 6601043 6601044 + ORSgTEMT00101338 161 0.0003 (1/2984) 0 * * Os_TE_656359 Chr11 6598461 6598460 - SZ-5LTR 1223 0.0018 (3/1706) -1 * * Os_TE_656353 Chr11 6594853 6594852 + SEVERIN-2 1952 0.0012 (2/1688) -1 * * Os_TE_656351 Chr11 6594089 6594090 + ORSiTERTOOT00296 5553 0.0023 (4/1750) -1 * Os_TE_656350 Os_TE_656350 Chr11 6594085 6594084 - SC-3_LTR 5748 0.0023 (4/1748) -1 * Os_TE_656351 Os_TE_656347 Chr11 6593449 6593450 + ORSgTEMT00901798 232 0.0006 (1/1706) -1 * * Os_TE_656255 Chr11 6553511 6553510 + MPING 430 0.0010 (1/1023) -1 * * Os_TE_656204 Chr11 6545335 6545334 + TRUNCATOR 2918 0.0027 (8/2959) 0 * * Os_TE_656190 Chr11 6538683 6538682 + ORSgTEMT01601525 239 0.0012 (2/1632) -1 * * Os_TE_656184 Chr11 6537859 6537860 + SC-3_LTR 5748 0.2359 (431/1827) -1 * Os_TE_656183 Os_TE_656183 Chr11 6537855 6537854 - SC-3_LTR 5748 0.1586 (430/2711) -1 * Os_TE_656184 Os_TE_656132 Chr11 6517815 6517814 - RETROFIT_LTR 4866 0.0003 (1/2976) 0 * * Os_TE_656116 Chr11 6512697 6512698 + RETROSAT4_LTR 13504 0.0440 (131/2979) 0 * Os_TE_656115 Os_TE_656115 Chr11 6512693 6512692 - RETROSAT4_LTR 13504 0.0497 (148/2977) 0 * Os_TE_656116 Os_TE_656104 Chr11 6508880 6508881 - COPIA2-LTR_OS 6433 0.0003 (1/2897) 0 * * Os_TE_656101 Chr11 6508857 6508856 - RIRE2_LTR 11306 0.0392 (115/2931) 0 * * Os_TE_656092 Chr11 6504366 6504367 + SZ-40LTR 2465 0.0665 (177/2662) 0 * Os_TE_656091 Os_TE_656091 Chr11 6504362 6504361 - GYPSY-A_LTR 8951 0.0676 (180/2664) 0 * Os_TE_656092 Os_TE_656088 Chr11 6502876 6502875 - RETROSAT2LTR 12796 0.4455 (1190/2671) 0 * * Os_TE_656087 Chr11 6502533 6502534 - RETROSAT2LTR 12796 0.5279 (1409/2669) 0 * Os_TE_656086 Os_TE_656086 Chr11 6502531 6502530 + RETROSAT2LTR 12796 0.5137 (1350/2628) 0 * Os_TE_656087 Os_TE_656085 Chr11 6502292 6502293 + RETROSAT2LTR 12796 0.0013 (3/2262) 0 * Os_TE_656084 Os_TE_656084 Chr11 6502290 6502289 - RETROSAT2LTR 12796 0.0016 (4/2491) 0 * Os_TE_656085 Os_TE_656083 Chr11 6502258 6498925 + SZ-40LTR 2465 0.3015 (799/2650) 1 Intact * Os_TE_656077 Chr11 6497314 6497194 - SINE1R5_OS 121 0.8615 (784/910) 1 Intact * Os_TE_656071 Chr11 6496071 6496207 - ORSgTEMT01700659 156 0.8511 (829/974) 1 Intact * Os_TE_656070 Chr11 6496010 6496009 - RIRE2_LTR 11306 0.0014 (4/2906) 0 * * Os_TE_656064 Chr11 6493480 6493481 - CLOUD-4 520 0.0014 (4/2762) 0 * Os_TE_656063 Os_TE_656063 Chr11 6493472 6493471 + CLOUD-4 520 0.0018 (5/2780) 0 * Os_TE_656064 Os_TE_656026 Chr11 6484505 6484506 - RETROSAT2LTR 12796 0.0694 (196/2824) 0 * Os_TE_656025 Os_TE_656025 Chr11 6484502 6484501 + RETROSAT2LTR 12796 0.0647 (182/2812) 0 * Os_TE_656026 Os_TE_656011 Chr11 6473970 6473971 - ENSPM6_OS 9815 0.0061 (17/2769) 0 * Os_TE_656010 Os_TE_656010 Chr11 6473968 6473967 + ENSPM6_OS 9815 0.0054 (15/2769) 0 * Os_TE_656011 Os_TE_656009 Chr11 6473713 6473714 - OSTE20 496 0.3087 (877/2841) 0 * * Os_TE_656008 Chr11 6473453 6473454 - RIRE2_LTR 11306 0.0004 (1/2849) 0 * * Os_TE_655993 Chr11 6472474 6472475 - ORSgTETN00200001 10994 0.0093 (26/2790) 0 * Os_TE_655992 Os_TE_655992 Chr11 6472472 6472471 + SPMLIKE 10989 0.0068 (19/2793) 0 * Os_TE_655993 Os_TE_655950 Chr11 6449380 6449379 + RIREX_LTR 8828 0.0031 (3/969) 0 * * Os_TE_655936 Chr11 6439706 6439705 - ORSgTEMT00100583 156 0.0088 (8/912) 0 * * Os_TE_655924 Chr11 6438744 6438743 - ORSiTERTOOT00269 10834 0.0032 (3/952) 0 * * Os_TE_655890 Chr11 6416629 6416628 - GLUTEL1LIKE 273 0.0046 (5/1097) 0 * * Os_TE_655887 Chr11 6415925 6415926 + STOWAWAY9_OS 235 0.0045 (5/1119) 0 * Os_TE_655886 Os_TE_655886 Chr11 6415924 6415923 - STOWAWAY9_OS 235 0.0017 (5/2958) 0 * Os_TE_655887 Os_TE_655883 Chr11 6414893 6414892 + ORSgTEMT01602188 240 0.0057 (6/1045) 0 * * Os_TE_655882 Chr11 6413443 6413444 + YOUREN 286 0.1834 (205/1118) 0 * Os_TE_655881 Os_TE_655881 Chr11 6413441 6413440 - YOUREN 286 0.1834 (206/1123) 0 * Os_TE_655882 Os_TE_655844 Chr11 6398084 6398083 - CACTA-M 1129 0.0020 (6/2947) 0 * * Os_TE_655838 Chr11 6397067 6397222 + UNIQUE 158 0.3697 (1029/2783) 1 Intact * Os_TE_655836 Chr11 6397028 6397029 + TNR8-1 418 0.0029 (3/1042) 0 * Os_TE_655835 Os_TE_655835 Chr11 6397020 6397019 - TYPEG 427 0.6402 (1774/2771) 0 * Os_TE_655836 Os_TE_655834 Chr11 6396898 6396897 + ORSgTETNOOT00908 242 0.0007 (2/2954) 0 * * Os_TE_655825 Chr11 6391303 6390381 - OSTE17 734 0.2789 (832/2983) 1 Intact Os_TE_655824 Os_TE_655824 Chr11 6390381 6391303 - OSTE17 734 0.2791 (832/2981) 1 Intact Os_TE_655825 Os_TE_655816 Chr11 6386560 6386561 + EnSpm-8_OS 5607 0.0004 (1/2853) 0 * Os_TE_655815 Os_TE_655815 Chr11 6386558 6386557 - EnSpm-8_OS 5607 0.0003 (1/2983) 0 * Os_TE_655816 Os_TE_655806 Chr11 6380017 6380018 + OLO24 345 0.0641 (181/2824) 0 * Os_TE_655804 Os_TE_655804 Chr11 6379958 6379957 - ORSgTEMT01601432 239 0.0758 (215/2838) 0 * Os_TE_655806 Os_TE_655739 Chr11 6363546 6363547 - SZ-35LTR 3853 0.0010 (3/2964) 0 * Os_TE_655738 Os_TE_655738 Chr11 6363542 6363541 + RETROSAT4_LTR 13504 0.0007 (2/2960) 0 * Os_TE_655739 Os_TE_655735 Chr11 6362894 6362893 + COPI2_LTR 4733 0.0007 (2/2967) 0 * * Os_TE_655721 Chr11 6359169 6359168 + SPMLIKE 10989 0.0003 (1/2878) 0 * * Os_TE_655720 Chr11 6359085 6359086 - Cassandra_OS-LTR 764 0.0302 (89/2944) 0 * Os_TE_655719 Os_TE_655719 Chr11 6359081 6359080 + RETROSAT4_LTR 13504 0.0307 (90/2935) 0 * Os_TE_655720 Os_TE_655718 Chr11 6358579 6358580 - SUSU 279 0.0019 (3/1577) 0 * Os_TE_655717 Os_TE_655717 Chr11 6358577 6358576 + ORSgTEMT05000092 279 0.0033 (6/1834) 0 * Os_TE_655718 Os_TE_655705 Chr11 6348083 6348084 - Cassandra_OS-LTR 764 0.0007 (2/2983) 0 * Os_TE_655704 Os_TE_655704 Chr11 6348079 6348078 + TRUNCATOR2_LTR 2904 0.0007 (2/2982) 0 * Os_TE_655705 Os_TE_655691 Chr11 6342315 6342316 - MPING 430 0.0003 (1/2976) 0 * Os_TE_655690 Os_TE_655690 Chr11 6342313 6342312 + MPING 430 0.0003 (1/2977) 0 * Os_TE_655691 Os_TE_655689 Chr11 6342220 6342221 + ORSgTEMT01701591 154 0.0030 (9/2983) 0 * * Os_TE_655686 Chr11 6340458 6340457 + ORSiTERTOOT00097 759 0.0004 (1/2675) 0 * * Os_TE_655644 Chr11 6312839 6312840 - RETRO2_LTR 12874 0.0324 (97/2995) 0 * * Os_TE_655640 Chr11 6311969 6311968 + COPI2_LTR 4733 0.0003 (1/2991) 0 * * Os_TE_655638 Chr11 6308455 6308456 + ORSgTETNOOT00032 218 0.0072 (21/2906) 0 * * Os_TE_655626 Chr11 6299672 6299671 - SZ-22_LTR 4403 0.0007 (2/2883) 0 * * Os_TE_655608 Chr11 6288488 6288487 + ORSgTETNOOT01219 231 0.0007 (2/2987) 0 * * Os_TE_655568 Chr11 6272652 6272651 + OSTE18 129 0.1979 (591/2986) 0 * * Os_TE_655567 Chr11 6272648 6272649 - OSTE18 129 0.0131 (39/2986) 0 * * Os_TE_655558 Chr11 6265621 6265620 + TRUNCATOR 2918 0.1863 (556/2985) 0 * * Os_TE_655555 Chr11 6265498 6265497 + RETROSAT2LTR 12796 0.0073 (21/2881) 0 * * Os_TE_655553 Chr11 6264831 6264830 - OSTE28 298 0.0007 (2/2945) 0 * * Os_TE_655547 Chr11 6263359 6263358 - RIREX_LTR 8828 0.0007 (2/2924) 0 * * Os_TE_655535 Chr11 6256963 6256964 + MUDRN3_OS 903 0.2151 (560/2604) 0 * Os_TE_655534 Os_TE_655534 Chr11 6256955 6256954 + MUDRN3_OS 903 0.2093 (544/2599) 0 * Os_TE_655535 Os_TE_655531 Chr11 6256838 6256837 + TRUNCATOR 2918 0.0007 (2/2979) 0 * * Os_TE_655498 Chr11 6244757 6244756 + COPIA2-LTR_OS 6433 0.0003 (1/2872) 0 * * Os_TE_655483 Chr11 6242844 6242845 + CACTA-B 1103 0.0148 (32/2164) 0 * * Os_TE_655482 Chr11 6242499 6242500 + ORSiTERT00400043 479 0.2869 (853/2973) 0 * * Os_TE_655476 Chr11 6241927 6241928 + DS-RICE4N 715 0.0037 (11/2990) 0 * Os_TE_655475 Os_TE_655475 Chr11 6241920 6241919 - DS-RICE2N 613 0.0030 (9/2991) 0 * Os_TE_655476 Os_TE_655445 Chr11 6227012 6227011 - STOWAWAY51_OS 246 0.0003 (1/2995) 0 * Os_TE_655444 Os_TE_655444 Chr11 6227006 6227007 + STOWAWAY51_OS 246 0.0004 (1/2625) 0 * Os_TE_655445 Os_TE_655443 Chr11 6226903 6226904 + INDITTO 263 0.0003 (1/2989) 0 * Os_TE_655442 Os_TE_655442 Chr11 6226901 6226900 - INDITTO 263 0.0003 (1/2991) 0 * Os_TE_655443 Os_TE_655426 Chr11 6222113 6222114 - TEMPINDAS 4259 0.2485 (744/2994) 0 * Os_TE_655425 Os_TE_655425 Chr11 6222106 6222105 + TEMPINDAS 4259 0.2467 (737/2988) 0 * Os_TE_655426 Os_TE_655416 Chr11 6216617 6216616 + TRUNCATOR 2918 0.0007 (2/2969) 0 * Os_TE_655415 Os_TE_655415 Chr11 6216616 6216617 - TRUNCATOR 2918 0.0007 (2/2964) 0 * Os_TE_655416 Os_TE_655368 Chr11 6201946 6201945 - STOWAWAY50_OS 174 0.0003 (1/2989) 0 * * Os_TE_655344 Chr11 6197379 6197380 + CRM-LTR_OS 7749 0.0007 (1/1476) 0 * Os_TE_655343 Os_TE_655343 Chr11 6197373 6197372 - CRM-LTR_OS 7749 0.0004 (1/2338) 0 * Os_TE_655344 Os_TE_655342 Chr11 6196267 6196268 - BAJIELTR 4500 0.0023 (7/2993) 0 * * Os_TE_655341 Chr11 6195994 6195995 + RIREX_LTR 8828 0.0033 (10/2991) 0 * Os_TE_655340 Os_TE_655340 Chr11 6195990 6195989 - RIREX_LTR 8828 0.0033 (10/2991) 0 * Os_TE_655341 Os_TE_655338 Chr11 6195908 6195907 + ORSiTERTOOT00028 8600 0.0167 (50/2991) 0 * * Os_TE_655333 Chr11 6193905 6193904 - TRUNCATOR 2918 0.0552 (165/2991) 0 * * Os_TE_655276 Chr11 6155352 6149363 - ORSiTERT00100062 5674 0.2825 (844/2988) 1 Intact Os_TE_655275 Os_TE_655275 Chr11 6149363 6155335 + OSTONOR1_LTR 6440 0.2775 (824/2969) 1 Intact Os_TE_655276 Os_TE_655273 Chr11 6148568 6148569 + ORSgTEMT00300063 413 0.0036 (10/2754) 0 * Os_TE_655272 Os_TE_655272 Chr11 6148562 6148561 + ORSiTEMT00300001 383 0.0036 (10/2758) 0 * Os_TE_655273 Os_TE_655266 Chr11 6142246 6142245 - MICROPON-LIKE-1 428 0.0942 (158/1678) 0 * * Os_TE_655254 Chr11 6137699 6137700 - RIRE2_LTR 11306 0.0024 (7/2876) -1 * Os_TE_655253 Os_TE_655253 Chr11 6137695 6137694 - ORSgTERT00201216 11284 0.0028 (8/2868) -1 * Os_TE_655254 Os_TE_655230 Chr11 6132191 6132192 - RIRE2_LTR 11306 0.0225 (52/2311) 0 * * Os_TE_655225 Chr11 6130965 6130964 - RIRE2_LTR 11306 0.0017 (4/2331) 0 * * Os_TE_655212 Chr11 6126969 6126968 + ORSgTETNOOT01668 244 0.0048 (14/2915) 0 * * Os_TE_655192 Chr11 6113577 6113578 + ORSgTETNOOT00908 242 0.0532 (157/2950) 0 * * Os_TE_655185 Chr11 6110350 6110349 + TYPEH 309 0.7331 (2197/2997) 0 * * Os_TE_655183 Chr11 6109929 6109930 + NDNA1TNA_OS 334 0.0028 (8/2822) 0 * Os_TE_655182 Os_TE_655182 Chr11 6109927 6109926 - NDNA1TNA_OS 334 0.0030 (9/2986) 0 * Os_TE_655183 Os_TE_655181 Chr11 6109554 6109555 - TNR2A 152 0.1921 (559/2910) 0 * * Os_TE_655145 Chr11 6093172 6093173 - NDNA1TNA_OS 334 0.0020 (6/2992) 0 * Os_TE_655144 Os_TE_655144 Chr11 6093170 6093169 + NDNA1TNA_OS 334 0.0020 (6/2986) 0 * Os_TE_655145 Os_TE_655134 Chr11 6085176 6085177 - TELIA 141 0.0003 (1/2997) 0 * * Os_TE_655128 Chr11 6084056 6084055 + ORSgTEMT00700017 386 0.0004 (1/2853) 0 * * Os_TE_655116 Chr11 6079819 6075801 - OSLINE1-4 4779 0.2886 (857/2969) 1 Intact * Os_TE_655058 Chr11 6042939 6042726 + ORSgTEMT01601122 212 0.7889 (2223/2818) 1 Intact * Os_TE_655052 Chr11 6042144 6042145 - COPIA2-LTR_OS 6433 0.0013 (2/1531) 0 * Os_TE_655051 Os_TE_655051 Chr11 6042140 6042139 + COPIA2-LTR_OS 6433 0.0007 (2/2978) 0 * Os_TE_655052 Os_TE_655048 Chr11 6041329 6041330 - SZ-7A_LTR 11400 0.0243 (71/2925) 0 * * Os_TE_655045 Chr11 6040572 6040571 - SEVERIN-2 1952 0.1952 (583/2987) 0 * Os_TE_655044 Os_TE_655044 Chr11 6040519 6040520 + ORSgTEMT01602181 239 0.1903 (566/2974) 0 * Os_TE_655045 Os_TE_655043 Chr11 6039870 6039871 - RIREX_LTR 8828 0.0010 (3/2984) 0 * * Os_TE_655040 Chr11 6039093 6039092 - COPIA2-LTR_OS 6433 0.0003 (1/2926) 0 * * Os_TE_655023 Chr11 6035284 6035285 + RETROSAT2LTR 12796 0.4690 (1375/2932) 0 * Os_TE_655022 Os_TE_655022 Chr11 6035282 6035281 - RETROSAT2LTR 12796 0.4837 (1442/2981) 0 * Os_TE_655023 Os_TE_655007 Chr11 6024779 6024780 + SEVERIN-2 1952 0.0020 (6/2934) 0 * * Os_TE_655006 Chr11 6024640 6024639 + MuDR-N6_OS 836 0.4266 (1261/2956) 0 * * Os_TE_654986 Chr11 6006819 6006820 + OSTE15 1168 0.0027 (5/1849) -1 * * Os_TE_654979 Chr11 6004700 6004701 - MuDR4_OS 7610 0.0918 (236/2571) 0 * Os_TE_654978 Os_TE_654978 Chr11 6004693 6004692 - MuDR4_OS 7610 0.1310 (339/2588) 0 * Os_TE_654979 Os_TE_654976 Chr11 6004180 6004179 + DS-RICE4N 715 0.0110 (13/1185) -1 * * Os_TE_654969 Chr11 6002230 6002231 + RETRO2_LTR 12874 0.4206 (1253/2979) 0 * * Os_TE_654938 Chr11 5997138 5997139 + COPIA2-LTR_OS 6433 0.0004 (1/2680) 0 * Os_TE_654937 Os_TE_654937 Chr11 5997134 5997133 - COPIA2-LTR_OS 6433 0.0004 (1/2641) 0 * Os_TE_654938 Os_TE_654931 Chr11 5995508 5995507 + AMYLTP 383 0.0043 (3/695) -1 * * Os_TE_654907 Chr11 5990760 5990761 + SPMLIKE 10989 0.0011 (1/919) -1 * * Os_TE_654880 Chr11 5975348 5975349 - COPIA2-LTR_OS 6433 0.0008 (1/1281) -1 * * Os_TE_654835 Chr11 5957546 5957545 + SPMLIKE 10989 0.2884 (750/2601) -1 * * Os_TE_654834 Chr11 5957287 5957286 - ORSiTEMT01000008 242 0.0113 (12/1062) -1 * * Os_TE_654827 Chr11 5954852 5954853 + OLO24 345 0.5940 (1226/2064) -1 * Os_TE_654826 Os_TE_654826 Chr11 5954844 5954843 - OSTE21 1271 0.2527 (286/1132) -1 * Os_TE_654827 Os_TE_654821 Chr11 5947166 5946990 - STOWAWAY50_OS 174 0.3807 (814/2138) -1 Intact Os_TE_654819 Os_TE_654819 Chr11 5946990 5947166 - ORSgTEMT01702320 154 0.7227 (740/1024) -1 Intact Os_TE_654821 Os_TE_654787 Chr11 5938836 5938837 + COPIA2-LTR_OS 6433 0.0008 (1/1234) -1 * Os_TE_654786 Os_TE_654786 Chr11 5938832 5938831 - COPIA2-LTR_OS 6433 0.0056 (7/1240) -1 * Os_TE_654787 Os_TE_654772 Chr11 5936499 5936498 + ORSgTEMT01601934 207 0.2336 (303/1297) -1 * * Os_TE_654768 Chr11 5935854 5935853 - TRUNCATOR 2918 0.1842 (236/1281) -1 * * Os_TE_654767 Chr11 5935853 5935854 + TRUNCATOR 2918 0.1875 (239/1275) -1 * * Os_TE_654766 Chr11 5935848 5935847 - RIRE2_LTR 11306 0.0141 (18/1275) -1 * * Os_TE_654753 Chr11 5928278 5928279 - RETROSAT4_LTR 13504 0.0016 (3/1863) -1 * Os_TE_654752 Os_TE_654752 Chr11 5928274 5928273 + RETROSAT4_LTR 13504 0.0016 (2/1287) -1 * Os_TE_654753 Os_TE_654744 Chr11 5926491 5926490 + MuDR2_OS 6770 0.0823 (238/2892) 0 * * Os_TE_654742 Chr11 5926355 5926356 - MuDR2_OS 6770 0.0184 (43/2343) 0 * * Os_TE_654722 Chr11 5919178 5919177 - INDITTO 263 0.0077 (20/2609) -1 * * Os_TE_654704 Chr11 5911824 5911825 - SC-3_LTR 5748 0.0007 (2/2986) 0 * Os_TE_654703 Os_TE_654703 Chr11 5911820 5911819 + ORSiTERTOOT00296 5553 0.0007 (2/2989) 0 * Os_TE_654704 Os_TE_654702 Chr11 5910921 5910922 + MDR2 6967 0.0013 (4/2988) 0 * Os_TE_654701 Os_TE_654701 Chr11 5910913 5910912 + MDR2 6967 0.0013 (4/2988) 0 * Os_TE_654702 Os_TE_654694 Chr11 5907699 5907487 - ORSgTEMT01601976 234 0.6355 (1850/2911) 1 Intact * Os_TE_654687 Chr11 5906536 5906176 + ORSgTEMT00600272 361 0.2853 (844/2958) 1 Intact Os_TE_654686 Os_TE_654686 Chr11 5906176 5906536 + ORSgTEMT00600376 329 0.3675 (835/2272) 1 Intact Os_TE_654687 Os_TE_654675 Chr11 5901614 5901615 - OSTE18 129 0.0919 (275/2993) 0 * * Os_TE_654674 Chr11 5901339 5901338 - STOWAWAY51_OS 246 0.0010 (3/2991) 0 * Os_TE_654673 Os_TE_654673 Chr11 5901336 5901337 - STOWAWAY44_OS 240 0.0010 (3/2986) 0 * Os_TE_654674 Os_TE_654656 Chr11 5890131 5890130 - SZ-25LTR 330 0.0003 (1/2989) 0 * * Os_TE_654649 Chr11 5887340 5887341 + RETROSAT4_LTR 13504 0.0181 (54/2980) 0 * Os_TE_654648 Os_TE_654648 Chr11 5887336 5887335 - SZ-35LTR 3853 0.0246 (73/2967) 0 * Os_TE_654649 Os_TE_654641 Chr11 5885955 5885956 - STOWAWAY51_OS 246 0.0003 (1/2978) 0 * * Os_TE_654640 Chr11 5885453 5885454 + DS-RICE4N 715 0.0325 (97/2982) 0 * Os_TE_654639 Os_TE_654639 Chr11 5885446 5885445 - DS-RICE2N 613 0.0332 (99/2981) 0 * Os_TE_654640 Os_TE_654635 Chr11 5883326 5883325 + MPING 430 0.0003 (1/2937) 0 * * Os_TE_654621 Chr11 5881723 5881724 + MPING 430 0.0030 (9/2957) 0 * Os_TE_654620 Os_TE_654620 Chr11 5881721 5881720 - MPING 430 0.0031 (9/2935) 0 * Os_TE_654621 Os_TE_654619 Chr11 5880051 5880052 - BAJIELTR 4500 0.7429 (2193/2952) -1 * * Os_TE_654600 Chr11 5872785 5872786 - F524 291 0.6946 (1988/2862) 0 * * Os_TE_654596 Chr11 5870651 5870652 + OSTE33 1012 0.0022 (6/2788) 0 * * Os_TE_654594 Chr11 5869943 5869942 - INDITTO 263 0.0027 (8/2931) 0 * * Os_TE_654583 Chr11 5862082 5862081 + STOWAWAY1_OS 149 0.0003 (1/2912) 0 * * Os_TE_654573 Chr11 5858571 5858570 + TRUNCATOR2_LTR 2904 0.1293 (220/1702) 0 * * Os_TE_654572 Chr11 5857227 5857226 - TRUNCATOR 2918 0.0015 (4/2697) 0 * * Os_TE_654554 Chr11 5852609 5852610 + SPMLIKE 10989 0.1259 (217/1724) 0 * Os_TE_654553 Os_TE_654553 Chr11 5852607 5852606 - ORSgTETN00200001 10994 0.1255 (216/1721) 0 * Os_TE_654554 Os_TE_654552 Chr11 5850532 5850531 - CACTA-H 1152 0.0211 (36/1705) 0 * Os_TE_654551 Os_TE_654551 Chr11 5850528 5850529 + CACTA-I 1124 0.0229 (37/1615) 0 * Os_TE_654552 Os_TE_654549 Chr11 5849777 5849776 - SZ-48LTR 3632 0.0018 (3/1709) 0 * * Os_TE_654544 Chr11 5848588 5848587 + RETROSAT4_LTR 13504 0.3245 (550/1695) 0 * * Os_TE_654511 Chr11 5841634 5841633 + SETARIA2 1142 0.0018 (5/2797) 0 * * Os_TE_654503 Chr11 5836146 5836147 - OLO24 345 0.0451 (135/2991) 0 * * Os_TE_654492 Chr11 5834820 5834819 + KIDDOC 275 0.0003 (1/2981) 0 * * Os_TE_654491 Chr11 5834691 5834692 + SZ-62LTR 3649 0.0411 (122/2968) 0 * Os_TE_654490 Os_TE_654490 Chr11 5834687 5834686 - SZ-62LTR 3649 0.0441 (131/2972) 0 * Os_TE_654491 Os_TE_654488 Chr11 5831239 5836681 + SC-3_LTR 5748 0.5503 (821/1492) 1 Intact * Os_TE_654485 Chr11 5830436 5830435 - MPING 430 0.0103 (15/1462) 0 * * Os_TE_654482 Chr11 5829859 5829860 + OSTE33 1012 0.0040 (6/1489) 0 * Os_TE_654481 Os_TE_654481 Chr11 5829850 5829849 + OSTE33 1012 0.0040 (6/1489) 0 * Os_TE_654482 Os_TE_654479 Chr11 5829240 5829241 - SZ-55_LTR 10318 0.0007 (1/1497) 0 * Os_TE_654478 Os_TE_654478 Chr11 5829236 5829235 + SZ-55_LTR 10318 0.0007 (1/1495) 0 * Os_TE_654479 Os_TE_654470 Chr11 5825916 5825917 - MPING 430 0.0077 (23/2983) 0 * Os_TE_654469 Os_TE_654469 Chr11 5825914 5825913 + MPING 430 0.0097 (23/2372) 0 * Os_TE_654470 Os_TE_654434 Chr11 5809692 5809693 - TYPEU1 380 0.0022 (6/2677) 0 * Os_TE_654433 Os_TE_654433 Chr11 5809684 5809683 + TYPEU4 402 0.0022 (6/2680) 0 * Os_TE_654434 Os_TE_654430 Chr11 5808635 5808636 - SZ-55_LTR 10318 0.0010 (3/2973) 0 * Os_TE_654429 Os_TE_654429 Chr11 5808631 5808630 + SZ-55_LTR 10318 0.0010 (3/2971) 0 * Os_TE_654430 Os_TE_654428 Chr11 5807985 5807986 + COPIA2-LTR_OS 6433 0.0006 (1/1742) 0 * * Os_TE_654427 Chr11 5807854 5807855 - ENSPM4_OS 11610 0.0010 (3/2991) 0 * * Os_TE_654426 Chr11 5807565 5807564 + ORSiTEMT00300001 383 0.0010 (3/2990) 0 * * Os_TE_654425 Chr11 5807421 5807422 - RIRE2_LTR 11306 0.0010 (3/2978) 0 * Os_TE_654424 Os_TE_654424 Chr11 5807417 5807416 - ORSgTERT00201216 11284 0.0007 (2/2981) 0 * Os_TE_654425 Os_TE_654419 Chr11 5802206 5802060 + ORSgTEMT00501601 153 0.6061 (1054/1739) 1 Intact * Os_TE_654414 Chr11 5800252 5800251 + RIREX_LTR 8828 0.0931 (98/1053) 0 * * Os_TE_654413 Chr11 5799807 5799808 + TAMI2 254 0.0785 (104/1325) 0 * * Os_TE_654409 Chr11 5796345 5796608 - STOWAWAY17_OS 259 0.6326 (1021/1614) 1 Intact * Os_TE_654408 Chr11 5795926 5795925 - SZ-50_LTR 11691 0.0006 (1/1664) 0 * * Os_TE_654375 Chr11 5781164 5780829 + ORSgTEMT00101341 314 0.3829 (783/2045) 1 Intact * Os_TE_654364 Chr11 5774872 5774633 - STOWAWAY51_OS 246 0.7321 (765/1045) 1 Intact Os_TE_654363 Os_TE_654363 Chr11 5774633 5774870 - STOWAWAY51_OS 246 0.7399 (785/1061) 1 Intact Os_TE_654364 Os_TE_654352 Chr11 5768466 5768465 + TRUNCATOR 2918 0.0013 (4/2997) 0 * * Os_TE_654339 Chr11 5761264 5761263 + ORSgTETNOOT00908 242 0.6594 (1971/2989) 0 * * Os_TE_654337 Chr11 5760742 5760743 - TRUNCATOR 2918 0.0013 (4/2968) 0 * Os_TE_654336 Os_TE_654336 Chr11 5760737 5760736 + TRUNCATOR 2918 0.0013 (4/2970) 0 * Os_TE_654337 Os_TE_654335 Chr11 5760677 5760676 + ORSgTEMT00300063 413 0.0157 (47/2990) 0 * * Os_TE_654334 Chr11 5760669 5760670 + COPIA2-LTR_OS 6433 0.0010 (3/2992) 0 * Os_TE_654333 Os_TE_654333 Chr11 5760665 5760664 - COPIA2-LTR_OS 6433 0.0010 (3/2948) 0 * Os_TE_654334 Os_TE_654331 Chr11 5760238 5760237 + CACTA-H 1152 0.0369 (110/2985) 0 * Os_TE_654330 Os_TE_654330 Chr11 5760237 5760238 + ORSgTETN00200005 1121 0.0384 (115/2993) 0 * Os_TE_654331 Os_TE_654325 Chr11 5758265 5758264 + JINHUA 479 0.1885 (562/2982) 0 * * Os_TE_654322 Chr11 5757899 5757900 + UNIQUE 158 0.1712 (495/2891) 0 * Os_TE_654321 Os_TE_654321 Chr11 5757847 5757846 - STOWAWAY15-2_OS 145 0.1854 (537/2897) 0 * Os_TE_654322 Os_TE_654315 Chr11 5755040 5754800 + WANDERER 232 0.8151 (2425/2975) 1 Intact * Os_TE_654305 Chr11 5753150 5753151 - RETRO1_LTR 8314 0.0007 (2/2985) 0 * Os_TE_654304 Os_TE_654304 Chr11 5753146 5753145 + RETRO2A_LTR 12895 0.0007 (2/2989) 0 * Os_TE_654305 Os_TE_654282 Chr11 5748809 5748551 + ORSiTEMT02700001 259 0.3171 (757/2387) 1 Intact * Os_TE_654275 Chr11 5748146 5748147 - COPIA2-LTR_OS 6433 0.0004 (1/2723) 0 * * Os_TE_654252 Chr11 5735569 5735568 + STOWAWAY13_OS 251 0.0030 (7/2341) 0 * * Os_TE_654211 Chr11 5712462 5712463 + F770 284 0.0181 (53/2922) 0 * Os_TE_654210 Os_TE_654210 Chr11 5712460 5712459 - F770 284 0.0190 (56/2947) 0 * Os_TE_654211 Os_TE_654199 Chr11 5708753 5708754 + GYPSY-A_LTR 8951 0.0232 (68/2928) 0 * * Os_TE_654193 Chr11 5708400 5708401 + MUDRN3_OS 903 0.0370 (110/2969) 0 * * Os_TE_654178 Chr11 5706073 5705637 - ORSgTEMT01800062 435 0.8338 (2303/2762) 1 Intact * Os_TE_654177 Chr11 5705625 5705626 + AMYLTP 383 0.0172 (49/2851) 0 * * Os_TE_654173 Chr11 5705094 5705095 - SZ-22_LTR 4403 0.0003 (1/2966) 0 * Os_TE_654172 Os_TE_654172 Chr11 5705090 5705089 + ORSiTERTOOT00226 792 0.0003 (1/2940) 0 * Os_TE_654173 Os_TE_654171 Chr11 5704478 5704477 - ORSgTEMT01601834 234 0.1008 (300/2976) 0 * * Os_TE_654169 Chr11 5703090 5703089 - NDNA1TNA_OS 334 0.0013 (4/2991) 0 * Os_TE_654168 Os_TE_654168 Chr11 5703071 5703072 + NDNA1TNA_OS 334 0.0010 (3/2988) 0 * Os_TE_654169 Os_TE_654166 Chr11 5700238 5700237 + F770 284 0.0013 (4/2969) 0 * * Os_TE_654164 Chr11 5699798 5699799 + SEVERIN-2 1952 0.2627 (772/2939) 0 * * Os_TE_654135 Chr11 5686320 5686321 + MDR2 6967 0.0231 (69/2985) 0 * * Os_TE_654129 Chr11 5685080 5685081 - RIRE2_LTR 11306 0.0007 (2/2980) 0 * Os_TE_654128 Os_TE_654128 Chr11 5685076 5685075 + RIRE2_LTR 11306 0.0007 (2/2965) 0 * Os_TE_654129 Os_TE_654115 Chr11 5678122 5678123 + SPMLIKE 10989 0.0010 (3/2929) 0 * Os_TE_654114 Os_TE_654114 Chr11 5678120 5678119 - ORSgTETN00200001 10994 0.0010 (3/2965) 0 * Os_TE_654115 Os_TE_654048 Chr11 5665124 5665123 + ORSgTEMT01602119 229 0.0003 (1/2980) 0 * * Os_TE_654047 Chr11 5665100 5665101 - SZ-40LTR 2465 0.0003 (1/2977) 0 * Os_TE_654046 Os_TE_654046 Chr11 5665096 5665095 + SZ-40LTR 2465 0.0003 (1/2980) 0 * Os_TE_654047 Os_TE_654045 Chr11 5664985 5664986 - RETRO1_LTR 8314 0.3435 (1024/2981) 0 * Os_TE_654044 Os_TE_654044 Chr11 5664981 5664980 + RETRO2A_LTR 12895 0.3424 (1020/2979) 0 * Os_TE_654045 Os_TE_654041 Chr11 5664105 5664106 + Mudr5_OS 5952 0.0026 (7/2708) 0 * * Os_TE_654036 Chr11 5655399 5655400 - SC-3_LTR 5748 0.0003 (1/2978) 0 * Os_TE_654035 Os_TE_654035 Chr11 5655395 5655394 + ORSiTERTOOT00296 5553 0.0003 (1/2969) 0 * Os_TE_654036 Os_TE_654026 Chr11 5652553 5652552 + RIREX_LTR 8828 0.0057 (17/2996) 0 * * Os_TE_654025 Chr11 5650160 5650161 + SZ-62LTR 3649 0.0010 (3/2999) 0 * Os_TE_654024 Os_TE_654024 Chr11 5650156 5650155 - SZ-62LTR 3649 0.0010 (3/2999) 0 * Os_TE_654025 Os_TE_654017 Chr11 5648232 5648233 - ORSgTERT00201216 11284 0.0007 (2/2998) 0 * Os_TE_654016 Os_TE_654016 Chr11 5648228 5648227 - RIRE2_LTR 11306 0.0007 (2/2996) 0 * Os_TE_654017 Os_TE_654014 Chr11 5647713 5647712 + OSTONOR1_LTR 6440 0.0003 (1/2997) 0 * * Os_TE_654013 Chr11 5646649 5646650 - SC-3_LTR 5748 0.0013 (4/2986) 0 * Os_TE_654012 Os_TE_654012 Chr11 5646645 5646644 + ORSiTERTOOT00296 5553 0.0017 (5/2985) 0 * Os_TE_654013 Os_TE_654001 Chr11 5640070 5640071 + ORSgTEMT00300122 416 0.0013 (4/2995) 0 * * Os_TE_653973 Chr11 5629433 5629434 + OSTE15 1168 0.0169 (50/2957) 0 * * Os_TE_653970 Chr11 5629225 5629226 + TWIF 586 0.0065 (19/2931) 0 * * Os_TE_653962 Chr11 5625047 5625046 - ORSgTEMT01400033 210 0.7423 (2183/2941) 0 * * Os_TE_653930 Chr11 5613807 5613808 - TYPEM 227 0.0010 (3/2990) 0 * * Os_TE_653928 Chr11 5611505 5611506 + ORSgTETNOOT01668 244 0.0010 (3/2975) 0 * * Os_TE_653927 Chr11 5611323 5611324 + SINE03_OS 360 0.1077 (322/2991) 0 * * Os_TE_653911 Chr11 5605411 5605412 + COPIA2-LTR_OS 6433 0.0011 (3/2670) 0 * * Os_TE_653869 Chr11 5592407 5592408 + INDITTO 263 0.0219 (59/2688) 0 * Os_TE_653868 Os_TE_653868 Chr11 5592405 5592404 - INDITTO 263 0.0216 (58/2691) 0 * Os_TE_653869 Os_TE_653866 Chr11 5589893 5589892 + ORSiTERTOOT00296 5553 0.0004 (1/2612) 0 * * Os_TE_653864 Chr11 5589881 5589880 + STOWAWAY1_OS 149 0.6334 (1856/2930) 0 * * Os_TE_653858 Chr11 5585643 5585644 + ORSgTEMT00101674 340 0.0024 (7/2973) 0 * * Os_TE_653838 Chr11 5572967 5580033 - GYPSY-B_LTR 7068 0.4727 (1411/2985) 1 Intact * Os_TE_653836 Chr11 5572924 5572923 - COPIA2-LTR_OS 6433 0.0224 (66/2943) 0 * * Os_TE_653835 Chr11 5572678 5572679 + COPIA1-LTR_OS 9292 0.0007 (2/2986) 0 * * Os_TE_653834 Chr11 5572428 5572293 + ORSgTEMT00502228 149 0.4739 (1416/2988) 1 Intact Os_TE_653831 Os_TE_653831 Chr11 5572286 5572426 + ORSgTEMT00500260 149 0.4707 (1407/2989) 1 Intact Os_TE_653834 Os_TE_653819 Chr11 5566019 5566020 + STOWAWAY21_OS 243 0.3093 (916/2962) 0 * * Os_TE_653816 Chr11 5565759 5565758 - ORSgTEMT00500081 146 0.0023 (7/2980) 0 * * Os_TE_653815 Chr11 5565551 5565550 - ORSgTEMT00901723 248 0.0024 (7/2977) 0 * * Os_TE_653812 Chr11 5563188 5563189 + RIRE5-LTR_OS 6427 0.0023 (7/2990) 0 * Os_TE_653811 Os_TE_653811 Chr11 5563184 5563183 - SZ-14LTR 1193 0.0023 (7/2996) 0 * Os_TE_653812 Os_TE_653810 Chr11 5562530 5562531 + RIREX_LTR 8828 0.0201 (60/2984) 0 * Os_TE_653809 Os_TE_653809 Chr11 5562526 5562525 - RIREX_LTR 8828 0.0214 (64/2993) 0 * Os_TE_653810 Os_TE_653808 Chr11 5562409 5562410 - SZ-9LTR 965 0.0286 (67/2345) 0 * Os_TE_653807 Os_TE_653807 Chr11 5562405 5562404 + SZ-9LTR 965 0.2605 (778/2987) 0 * Os_TE_653808 Os_TE_653806 Chr11 5562402 5562403 - SZ-9LTR 965 0.2580 (770/2985) 0 * * Os_TE_653805 Chr11 5562219 5561884 + ORSgTEMT00101341 314 0.2807 (834/2971) 1 Intact Os_TE_653804 Os_TE_653804 Chr11 5561883 5562221 + ORSgTEMT00100531 325 0.2601 (752/2891) 1 Intact Os_TE_653805 Os_TE_653799 Chr11 5561075 5561074 + UNIQUE 158 0.0024 (7/2867) 0 * * Os_TE_653794 Chr11 5559374 5559375 + INDITTO 263 0.2031 (609/2999) 0 * * Os_TE_653779 Chr11 5555976 5555977 + MERMITEB 1610 0.0020 (6/2996) 0 * Os_TE_653778 Os_TE_653778 Chr11 5555965 5555964 - MERMITE18B 1306 0.0023 (7/2996) 0 * Os_TE_653779 Os_TE_653773 Chr11 5555556 5555555 - ORSiTEMT00900006 229 0.0007 (2/2995) 0.07 * * Os_TE_653755 Chr11 5553092 5547217 + OSTONOR1_LTR 6440 0.2035 (606/2978) 1 Intact Os_TE_653754 Os_TE_653754 Chr11 5547217 5553092 - ORSiTERT00100062 5674 0.2022 (602/2977) 1 Intact Os_TE_653755 Os_TE_653749 Chr11 5545461 5545462 - SC-8_LTR 4951 0.0492 (147/2989) 0 * Os_TE_653748 Os_TE_653748 Chr11 5545457 5545456 + SC-8_LTR 4951 0.0492 (147/2985) 0 * Os_TE_653749 Os_TE_653747 Chr11 5545091 5544849 + ORSgTEMT01601591 242 0.3612 (1042/2885) 1 Intact Os_TE_653745 Os_TE_653745 Chr11 5544846 5545091 + STOWAWAY51_OS 246 0.3706 (1086/2930) 1 Intact Os_TE_653747 Os_TE_653697 Chr11 5537433 5536133 + ORSgTETN00200004 1343 0.2618 (760/2903) 1 Intact * Os_TE_653692 Chr11 5535249 5535248 + RETRO2A_LTR 12895 0.0219 (64/2918) 0 * * Os_TE_653685 Chr11 5534300 5534301 + CASGRANDA 465 0.0131 (39/2972) 0 * * Os_TE_653659 Chr11 5526072 5520810 + OSMAR1 5265 0.2062 (590/2861) 1 Intact * Os_TE_653650 Chr11 5517401 5517400 + ORSiTERT00200069 6058 0.0007 (2/2761) 0 * * Os_TE_653647 Chr11 5516775 5516774 - ORSgTEMT02900061 318 0.0809 (239/2955) 0 * * Os_TE_653644 Chr11 5514133 5514134 + MERMITE18D 1491 0.6504 (1879/2889) 0 * * Os_TE_653640 Chr11 5513928 5513927 + DS-RICE4N 715 0.6668 (1989/2983) 0 * * Os_TE_653639 Chr11 5513725 5512820 - ORSgTEMT00600085 364 0.8117 (858/1057) 1 Intact * Os_TE_653628 Chr11 5512380 5512379 + OSMU5 4881 0.0625 (186/2974) 0 * * Os_TE_653622 Chr11 5499691 5511224 + RETROSAT3_LTR 11537 0.1951 (579/2967) 1 Intact * Os_TE_653615 Chr11 5494965 5493638 + CACTA-B 1103 0.2594 (775/2988) 1 Intact * Os_TE_653594 Chr11 5486463 5486462 - ORSiTETNOOT00216 3569 0.0474 (140/2954) 0 * * Os_TE_653591 Chr11 5486309 5486308 + OSMAR1 5265 0.0179 (53/2967) 0 * * Os_TE_653590 Chr11 5486290 5486291 - MERMITEA 1710 0.0171 (51/2982) 0 * Os_TE_653589 Os_TE_653589 Chr11 5486282 5486281 + MERMITEA 1710 0.0159 (47/2963) 0 * Os_TE_653590 Os_TE_653587 Chr11 5483915 5483916 - ORSiTETN00200006 8216 0.0077 (23/2978) 0 * * Os_TE_653562 Chr11 5470053 5470052 - ORSgTEMT04800063 360 0.2331 (696/2986) 0 * * Os_TE_653556 Chr11 5460636 5460637 + COPIO_LTR 11693 0.0017 (5/2887) 0 * * Os_TE_653552 Chr11 5458959 5458958 + NDNA1TNA_OS 334 0.0007 (2/2994) 0 * * Os_TE_653548 Chr11 5458089 5458090 + ORSgTEMT00101231 340 0.0025 (5/1974) 0 * * Os_TE_653534 Chr11 5452918 5452917 - STOWAWAY21_OS 243 0.0003 (1/2883) 0 * * Os_TE_653505 Chr11 5440625 5440626 + SPMLIKE 10989 0.0020 (6/2951) 0 * Os_TE_653504 Os_TE_653504 Chr11 5440623 5440622 - ORSgTETN00200001 10994 0.0024 (7/2952) 0 * Os_TE_653505 Os_TE_653496 Chr11 5436466 5436467 + RETRO2_LTR 12874 0.0007 (2/2812) 0 * * Os_TE_653478 Chr11 5431498 5431499 + ORSiCMCM00100019 2717 0.0037 (11/2987) 0 * Os_TE_653477 Os_TE_653477 Chr11 5431494 5431493 - TRUNCATOR2_LTR 2904 0.0043 (13/2989) 0 * Os_TE_653478 Os_TE_653476 Chr11 5431457 5431458 + ORSgTETNOOT00032 218 0.0211 (63/2979) 0 * * Os_TE_653474 Chr11 5431369 5431368 + ORSgTETNOOT01998 254 0.1366 (408/2987) 0 * * Os_TE_653466 Chr11 5430179 5430180 - STOWAWAY44_OS 240 0.0280 (78/2781) 0 * * Os_TE_653456 Chr11 5419157 5419158 + OSMU5 4881 0.0037 (10/2698) 0 * * Os_TE_653447 Chr11 5416680 5416681 + ORSiTERTOOT00167 1524 0.0013 (4/2968) 0 * * Os_TE_653446 Chr11 5416606 5416607 - RETRO1_LTR 8314 0.0003 (1/2961) 0 * Os_TE_653445 Os_TE_653445 Chr11 5416602 5416601 + RETRO2A_LTR 12895 0.0003 (1/2950) 0 * Os_TE_653446 Os_TE_653431 Chr11 5413450 5413449 - ORSgTEMT01800042 449 0.0004 (1/2821) 0 * * Os_TE_653426 Chr11 5411631 5411630 + COPIA2-LTR_OS 6433 0.0017 (5/2955) 0 * * Os_TE_653393 Chr11 5392574 5392575 + MERMITE18F 1175 0.0003 (1/2969) 0 * * Os_TE_653383 Chr11 5390466 5390467 - COPIA2-LTR_OS 6433 0.0010 (3/2979) 0 * * Os_TE_653367 Chr11 5387539 5387538 - RIRE2_LTR 11306 0.0010 (3/2987) 0 * * Os_TE_653355 Chr11 5384695 5384696 + RETRO2A_LTR 12895 0.0003 (1/2992) 0 * Os_TE_653354 Os_TE_653354 Chr11 5384691 5384690 - RETRO1_LTR 8314 0.0003 (1/2990) 0 * Os_TE_653355 Os_TE_653328 Chr11 5371720 5371721 + TRUNCATOR 2918 0.1790 (536/2994) 0 * * Os_TE_653264 Chr11 5348878 5348879 - TYPEM 227 0.0079 (4/509) -1 * * Os_TE_653250 Chr11 5346711 5346710 + STOWAWAY17_OS 259 0.6161 (1788/2902) 0 * * Os_TE_653191 Chr11 5327741 5327742 + MuDR2_OS 6770 0.0046 (13/2849) 0 * Os_TE_653190 Os_TE_653190 Chr11 5327733 5327732 - MuDR2_OS 6770 0.0042 (12/2846) 0 * Os_TE_653191 Os_TE_653090 Chr11 5272474 5272475 + RIREX_LTR 8828 0.0013 (3/2356) 0 * Os_TE_653089 Os_TE_653089 Chr11 5272470 5272469 - RIREX_LTR 8828 0.0013 (3/2337) 0 * Os_TE_653090 Os_TE_653031 Chr11 5245650 5245651 + COPIA2-LTR_OS 6433 0.0006 (1/1592) -1 * Os_TE_653030 Os_TE_653030 Chr11 5245646 5245645 - COPIA2-LTR_OS 6433 0.0006 (1/1595) -1 * Os_TE_653031 Os_TE_653008 Chr11 5239191 5239192 - OSTE15 1168 0.0006 (1/1589) -1 * * Os_TE_652979 Chr11 5222518 5222519 + ORSgTETNOOT00012 241 0.0008 (1/1326) -1 * * Os_TE_652978 Chr11 5221940 5221941 + SPMLIKE 10989 0.1514 (208/1374) -1 * Os_TE_652977 Os_TE_652977 Chr11 5221938 5221937 - ORSgTETN00200001 10994 0.1077 (141/1309) -1 * Os_TE_652978 Os_TE_652973 Chr11 5220246 5220247 - ORSgTETNOOT01072 229 0.0006 (1/1600) -1 * Os_TE_652972 Os_TE_652972 Chr11 5220243 5220242 - INDITTO 263 0.0006 (1/1602) -1 * Os_TE_652973 Os_TE_652969 Chr11 5218825 5218824 - SZ-5LTR 1223 0.0006 (1/1585) -1 * * Os_TE_652935 Chr11 5198396 5198397 + INDITTO 263 0.0932 (250/2683) 0 * Os_TE_652934 Os_TE_652934 Chr11 5198395 5198394 - INDITTO 263 0.0931 (252/2707) 0 * Os_TE_652935 Os_TE_652916 Chr11 5194239 5192985 - SZ-19LTR 1513 0.8886 (2153/2423) 1 Intact * Os_TE_652862 Chr11 5178451 5178452 + TRUNCATOR 2918 0.0424 (86/2026) 0 * * Os_TE_652848 Chr11 5174063 5174062 - COPIA2-LTR_OS 6433 0.0004 (1/2834) 0 * * Os_TE_652831 Chr11 5167527 5167528 - TYPEM 227 0.0007 (2/2968) 0 * Os_TE_652830 Os_TE_652830 Chr11 5167526 5167525 - ORSgTEMT02400179 221 0.0007 (2/2963) 0 * Os_TE_652831 Os_TE_652821 Chr11 5163576 5163577 - ORSiTETNOOT00216 3569 0.0037 (11/2973) 0 * Os_TE_652820 Os_TE_652820 Chr11 5163569 5163568 + TWIFBIG 3567 0.0034 (10/2968) 0 * Os_TE_652821 Os_TE_652790 Chr11 5148814 5148813 - SC-3_LTR 5748 0.0470 (141/2997) 0 * * Os_TE_652778 Chr11 5143323 5143322 + ORSiTERTOOT00296 5553 0.0047 (14/2989) 0 * * Os_TE_652760 Chr11 5135857 5135858 + HATOS1 3488 0.0010 (3/2989) 0 * Os_TE_652759 Os_TE_652759 Chr11 5135850 5135849 - HATOS1 3488 0.0010 (3/2991) 0 * Os_TE_652760 Os_TE_652733 Chr11 5127974 5127975 - ORSgTERT00201216 11284 0.0455 (135/2966) 0 * * Os_TE_652728 Chr11 5126773 5126774 + EnSpm-13_OS 11171 0.0003 (1/2995) 0 * * Os_TE_652726 Chr11 5116842 5116843 + SPMLIKE 10989 0.0007 (2/2822) 0 * Os_TE_652725 Os_TE_652725 Chr11 5116840 5116839 - ORSgTETN00200001 10994 0.0007 (2/2672) 0 * Os_TE_652726 Os_TE_652714 Chr11 5113985 5113986 - TRUNCATOR2_LTR 2904 0.2499 (743/2973) 0 * Os_TE_652713 Os_TE_652713 Chr11 5113981 5113980 + ORSiCMCM00100019 2717 0.2385 (704/2952) 0 * Os_TE_652714 Os_TE_652683 Chr11 5097184 5097185 + ORSiTERTOOT00296 5553 0.0004 (1/2373) -1 * * Os_TE_652670 Chr11 5090945 5090944 + ORSgTEMT01602051 240 0.0017 (5/2968) 0 * Os_TE_652669 Os_TE_652669 Chr11 5090942 5090943 - TREP215 239 0.0024 (7/2942) 0 * Os_TE_652670 Os_TE_652666 Chr11 5089412 5089413 - MDM1 326 0.5620 (1667/2966) 0 * Os_TE_652665 Os_TE_652665 Chr11 5089404 5089403 - MDM1 326 0.5696 (1699/2983) 0 * Os_TE_652666 Os_TE_652657 Chr11 5087331 5087330 + OSTONOR1_LTR 6440 0.0003 (1/2967) 0 * * Os_TE_652637 Chr11 5073680 5073681 - TELIA 141 0.0003 (1/2939) 0 * * Os_TE_652625 Chr11 5070341 5070340 - COPIA2-LTR_OS 6433 0.0007 (2/2895) 0 * * Os_TE_652598 Chr11 5056989 5056990 + ORSiTERTOOT00097 759 0.0017 (5/2930) 0 * * Os_TE_652569 Chr11 5032510 5032509 - CLOUD-6 508 0.2396 (712/2971) 0 * * Os_TE_652559 Chr11 5027303 5027302 + ORSgTEMT00502094 140 0.0043 (13/2993) 0 * * Os_TE_652558 Chr11 5027045 5027044 - ORSgTEMT01700029 143 0.0043 (13/2998) 0 * Os_TE_652557 Os_TE_652557 Chr11 5027044 5027045 + STOWAWAY1_OS 149 0.0040 (12/2994) 0 * Os_TE_652558 Os_TE_652556 Chr11 5026666 5026665 - ORSgTEMT00501711 149 0.0017 (5/2995) 0 * * Os_TE_652554 Chr11 5026142 5026143 + ORSgTEMT03000039 377 0.0020 (6/2992) 0 * * Os_TE_652546 Chr11 5024904 5024905 - ORSgTEMT00101341 314 0.0003 (1/2973) 0 * * Os_TE_652545 Chr11 5024502 5024501 - ORSgTETNOOT00118 134 0.0023 (7/2994) 0 * Os_TE_652544 Os_TE_652544 Chr11 5024501 5024502 - ORSgTEMT00500675 140 0.0020 (6/2987) 0 * Os_TE_652545 Os_TE_652543 Chr11 5024369 5024370 + STOWAWAY44_OS 240 0.0003 (1/2988) 0 * * Os_TE_652537 Chr11 5023748 5023747 + ORSgTEMT00501682 146 0.0071 (21/2977) 0 * * Os_TE_652533 Chr11 5022948 5022949 + COWARD-3 221 0.0008 (2/2444) -1 * * Os_TE_652528 Chr11 5022530 5022529 + ORSgTEMT00501005 147 0.0061 (18/2930) 0 * * Os_TE_652514 Chr11 5020058 5020057 + MERMITE-18 1263 0.0029 (7/2386) -1 * Os_TE_652513 Os_TE_652513 Chr11 5020051 5020052 - MERMITE18D 1491 0.0021 (6/2876) 0 * Os_TE_652514 Os_TE_652511 Chr11 5019706 5019707 - MPING 430 0.0003 (1/2973) 0 * * Os_TE_652510 Chr11 5019612 5019613 + COPIA2-LTR_OS 6433 0.0003 (1/2965) 0 * Os_TE_652509 Os_TE_652509 Chr11 5019608 5019607 - COPIA2-LTR_OS 6433 0.0003 (1/2956) 0 * Os_TE_652510 Os_TE_652504 Chr11 5016827 5016826 + NDNA1TNA_OS 334 0.0037 (11/2953) 0 * Os_TE_652503 Os_TE_652503 Chr11 5016824 5016825 + ORSgTEMT00101674 340 0.0040 (12/2965) 0 * Os_TE_652504 Os_TE_652495 Chr11 5014099 5014098 + MPING 430 0.0003 (1/2915) 0 * * Os_TE_652472 Chr11 5006292 5006293 + NDNA1TNA_OS 334 0.0003 (1/2897) 0 * * Os_TE_652467 Chr11 5004031 5004030 - OLO24C 356 0.0034 (10/2968) 0 * * Os_TE_652463 Chr11 5003672 4998210 - SC-3_LTR 5748 0.4142 (1236/2984) 1 Intact Os_TE_652457 Os_TE_652457 Chr11 4997935 5003672 + ORSiTERTOOT00296 5553 0.4146 (1238/2986) 1 Intact Os_TE_652463 Os_TE_652454 Chr11 4993082 4993083 + ORSgTEMT05000092 279 0.2578 (768/2979) 0 * Os_TE_652453 Os_TE_652453 Chr11 4993080 4993079 - SUSU 279 0.2512 (746/2970) 0 * Os_TE_652454 Os_TE_652445 Chr11 4990723 4990724 + SINE9_OS 293 0.0424 (127/2995) 0 * * Os_TE_652394 Chr11 4965571 4965570 - CPSC5_LTR 5141 0.0029 (6/2046) -1 * * Os_TE_652393 Chr11 4965001 4965000 - F524 291 0.0005 (1/1980) -1 * * Os_TE_652392 Chr11 4963569 4963570 - KIDDOC 275 0.2830 (795/2809) 0.92 * * Os_TE_652381 Chr11 4962824 4962823 + ORSgTETNOOT00032 218 0.0044 (8/1837) -1 * * Os_TE_652364 Chr11 4948387 4961267 + RETRO2A_LTR 12895 0.2358 (475/2014) -1 Intact * Os_TE_652298 Chr11 4924218 4924217 - ORSgTETNOOT01930 140 0.0003 (1/2979) 0 * * Os_TE_652291 Chr11 4916188 4916189 + RETROFIT4_LTR 4809 0.3081 (922/2993) 0 * Os_TE_652290 Os_TE_652290 Chr11 4916184 4916183 - RETROFIT4_LTR 4809 0.3047 (912/2993) 0 * Os_TE_652291 Os_TE_652224 Chr11 4888688 4888689 - COPI2_LTR 4733 0.0020 (6/2975) 0 * Os_TE_652223 Os_TE_652223 Chr11 4888684 4888683 + COPI2_LTR 4733 0.0020 (6/2977) 0 * Os_TE_652224 Os_TE_652219 Chr11 4886999 4885762 + RETRO2_LTR 12874 0.4278 (1257/2938) 1 Solo_LTR Os_TE_652218 Os_TE_652218 Chr11 4885762 4886999 - RETRO2_LTR 12874 0.4266 (1269/2975) 1 Solo_LTR Os_TE_652219 Os_TE_652208 Chr11 4882322 4882321 + RETRO2_LTR 12874 0.0342 (101/2954) 0 * * Os_TE_652185 Chr11 4876435 4876436 - MPING 430 0.0027 (8/2959) 0 * Os_TE_652184 Os_TE_652184 Chr11 4876433 4876432 + MPING 430 0.0027 (8/2959) 0 * Os_TE_652185 Os_TE_652176 Chr11 4874709 4873368 + OSTE33 1012 0.3753 (1116/2974) 1 Intact Os_TE_652174 Os_TE_652174 Chr11 4873368 4874709 + OSTE33 1012 0.3737 (1109/2968) 1 Intact Os_TE_652176 Os_TE_652172 Chr11 4873064 4873063 - STOWAWAY17_OS 259 0.0023 (7/2988) 0 * * Os_TE_652168 Chr11 4871690 4871689 - ORSgTEMT00600484 344 0.0315 (91/2892) 0 * * Os_TE_652161 Chr11 4864198 4866097 + MERMITEB 1610 0.3880 (1153/2972) 1 Intact * Os_TE_652160 Chr11 4860969 4860970 + OSR3_LTR 5201 0.0003 (1/2997) 0 * * Os_TE_652158 Chr11 4859666 4859667 - MUDRN3_OS 903 0.0010 (3/2942) 0 * * Os_TE_652153 Chr11 4854091 4854092 - ORSgTERT00200396 7338 0.0003 (1/2998) 0 * * Os_TE_652133 Chr11 4846516 4846515 + ORSiTETNOOT00170 3566 0.0044 (13/2928) 0 * * Os_TE_652083 Chr11 4829042 4829043 + ORSgTEMT02400245 225 0.0017 (5/2980) 0 * * Os_TE_652022 Chr11 4799040 4798296 + KRISPIE 956 0.1746 (518/2967) 1 Intact * Os_TE_652012 Chr11 4797267 4797266 - STOWAWAY51_OS 246 0.0003 (1/2959) 0 * * Os_TE_652010 Chr11 4797144 4797143 + GAIJIN 147 0.2658 (780/2935) 0 * * Os_TE_652008 Chr11 4797032 4796902 + ORSgTEMT00501455 153 0.4992 (1477/2959) 1 Intact Os_TE_652007 Os_TE_652007 Chr11 4796900 4797032 - ORSgTEMT00502135 148 0.5630 (1474/2618) 1 Intact Os_TE_652008 Os_TE_652006 Chr11 4796874 4796875 - ENSPM4_OS 11610 0.5264 (1564/2971) 0 * * Os_TE_652004 Chr11 4795025 4795024 - ORSgTEMT01702216 170 0.5197 (1533/2950) 0 * * Os_TE_652003 Chr11 4794527 4794286 + TREP215 239 0.4861 (1383/2845) 1 Intact Os_TE_652001 Os_TE_652001 Chr11 4794286 4794527 - ORSgTEMT01601696 238 0.4835 (1366/2825) 1 Intact Os_TE_652003 Os_TE_651998 Chr11 4793881 4794089 - ORSgTEMT01400038 210 0.4868 (1417/2911) 1 Intact * Os_TE_651994 Chr11 4791450 4791449 + ORSgTEMT01602637 232 0.4373 (1095/2504) 0 * * Os_TE_651984 Chr11 4785100 4785101 - MPING 430 0.0004 (1/2807) 0 * Os_TE_651983 Os_TE_651983 Chr11 4785098 4785097 + MPING 430 0.0003 (1/2913) 0 * Os_TE_651984 Os_TE_651973 Chr11 4783038 4779383 + TWIF 586 0.2353 (685/2911) 1 Intact Os_TE_651972 Os_TE_651972 Chr11 4779381 4783038 - ORSiTETNOOT00200 3563 0.2352 (688/2925) 1 Intact Os_TE_651973 Os_TE_651969 Chr11 4778066 4776599 - OSTE21 1271 0.2563 (753/2938) 1 Intact Os_TE_651968 Os_TE_651968 Chr11 4776600 4778058 + MDM2 312 0.2413 (699/2897) 1 Intact Os_TE_651969 Os_TE_651955 Chr11 4775581 4775582 - COPI2_LTR 4733 0.0014 (4/2940) 0 * Os_TE_651954 Os_TE_651954 Chr11 4775577 4775576 + COPI2_LTR 4733 0.0010 (3/2956) 0 * Os_TE_651955 Os_TE_651950 Chr11 4773072 4773071 - ORSgTEMT01400022 212 0.2696 (803/2979) 0 * Os_TE_651949 Os_TE_651949 Chr11 4773068 4773069 - ORSgTEMT01400014 209 0.2720 (813/2989) 0 * Os_TE_651950 Os_TE_651942 Chr11 4772362 4772361 - ORSgTEMT00900099 250 0.0018 (4/2228) 0 * Os_TE_651941 Os_TE_651941 Chr11 4772360 4772361 + ORSgTEMT00901422 244 0.0023 (7/2994) 0 * Os_TE_651942 Os_TE_651930 Chr11 4760372 4760373 - GYPSY1-LTR_OS 8900 0.2779 (826/2972) 0 * Os_TE_651929 Os_TE_651929 Chr11 4760368 4760367 + GYPSY-B_LTR 7068 0.2689 (795/2957) 0 * Os_TE_651930 Os_TE_651925 Chr11 4759179 4758683 - ORSgTEMT00100365 345 0.7362 (2143/2911) 1 Intact Os_TE_651919 Os_TE_651919 Chr11 4758638 4759175 - ORSgTEMT00100986 341 0.7404 (2193/2962) 1 Intact Os_TE_651925 Os_TE_651918 Chr11 4758482 4758481 - SZ-9LTR 965 0.2659 (781/2937) 0 * * Os_TE_651909 Chr11 4756841 4756842 - ORSgTEMT01602225 230 0.2512 (696/2771) -1 * * Os_TE_651901 Chr11 4754639 4754378 - ORSgTETNOOT02000 263 0.5642 (1076/1907) 1 Intact * Os_TE_651896 Chr11 4754126 4754374 - INDITTO 263 0.6517 (1452/2228) 1 Intact * Os_TE_651886 Chr11 4752939 4752938 + TREP215 239 0.2630 (756/2875) 0 * Os_TE_651885 Os_TE_651885 Chr11 4752936 4752937 - ORSgTEMT01600750 238 0.2657 (771/2902) 0 * Os_TE_651886 Os_TE_651884 Chr11 4752422 4752423 + ORSgTETNOOT00908 242 0.0008 (2/2501) 0 * * Os_TE_651871 Chr11 4744982 4744981 - ORSgTEMT02000012 196 0.5539 (1628/2939) 0 * * Os_TE_651870 Chr11 4744370 4744371 + COPIA2-LTR_OS 6433 0.0014 (4/2939) 0 * Os_TE_651869 Os_TE_651869 Chr11 4744366 4744365 - COPIA2-LTR_OS 6433 0.0020 (6/2933) 0 * Os_TE_651870 Os_TE_651868 Chr11 4743937 4743938 + INDITTO 263 0.0020 (6/2984) 0 * Os_TE_651867 Os_TE_651867 Chr11 4743935 4743934 - INDITTO 263 0.0020 (6/2982) 0 * Os_TE_651868 Os_TE_651858 Chr11 4740856 4740539 + ORSgTEMT00100474 336 0.4699 (1367/2909) 1 Intact * Os_TE_651851 Chr11 4739639 4739640 + ORSgTEMT01400032 215 0.5547 (1628/2935) 0 * * Os_TE_651799 Chr11 4661026 4661025 - RIRE3_LTR 12054 0.7805 (1650/2114) 0.89 * * Os_TE_651790 Chr11 4631290 4631291 - OSTE33 1012 0.0013 (4/2993) 0 * Os_TE_651789 Os_TE_651789 Chr11 4631281 4631280 - OSTE33 1012 0.0010 (3/2991) 0 * Os_TE_651790 Os_TE_651786 Chr11 4630147 4630146 + ORSiTERTOOT00296 5553 0.0003 (1/2995) 0 * * Os_TE_651767 Chr11 4622955 4622956 - ORSgTEMT00501610 129 0.0017 (5/2992) 0 * * Os_TE_651701 Chr11 4604681 4604680 + ORSgTEMT02400014 229 0.5306 (1568/2955) 0 * Os_TE_651700 Os_TE_651700 Chr11 4604679 4604680 - ORSgTEMT02400179 221 0.5306 (1562/2944) 0 * Os_TE_651701 Os_TE_651698 Chr11 4603460 4603459 - COPIA2-LTR_OS 6433 0.0003 (1/2974) 0 * * Os_TE_651680 Chr11 4594290 4594291 + ORSiCMCM00100019 2717 0.1585 (436/2750) 0 * * Os_TE_651678 Chr11 4593935 4593936 - TRUNCATOR 2918 0.2649 (635/2397) 0 * * Os_TE_651618 Chr11 4561924 4561925 + ORSiTERTOOT00296 5553 0.0003 (1/2977) 0 * * Os_TE_651599 Chr11 4556413 4556412 + ORSgTEMT01602181 239 0.7162 (1971/2752) 0 * Os_TE_651598 Os_TE_651598 Chr11 4556410 4556411 + ORSgTEMT01600662 238 0.7426 (2207/2972) 0 * Os_TE_651599 Os_TE_651596 Chr11 4555257 4555015 + DITTO-2 235 0.2691 (803/2984) 1 Intact * Os_TE_651590 Chr11 4554519 4554757 + ORSgTEMT01600486 232 0.2339 (638/2728) 1 Intact * Os_TE_651577 Chr11 4550053 4550189 - ORSgTEMT00501846 149 0.2915 (811/2782) 1 Intact * Os_TE_651576 Chr11 4550000 4550001 + ORSgTETNOOT02316 263 0.0067 (20/2974) 0 * Os_TE_651575 Os_TE_651575 Chr11 4549998 4549997 - INDITTO 263 0.0088 (21/2399) 0 * Os_TE_651576 Os_TE_651574 Chr11 4549686 4549685 - ORSgTEMT01800105 452 0.0064 (19/2953) 0 * * Os_TE_651573 Chr11 4549510 4549511 + RETROSAT2LTR 12796 0.0011 (1/896) 0 * * Os_TE_651570 Chr11 4548644 4548782 - ORSgTEMT00501060 144 0.2648 (766/2893) 1 Intact * Os_TE_651566 Chr11 4547790 4547789 - ORSgTEMT04200023 393 0.7399 (2188/2957) 0 * * Os_TE_651564 Chr11 4546619 4546356 - INDITTO 263 0.2720 (802/2949) 1 Intact * Os_TE_651559 Chr11 4546102 4546352 - DITAIL 271 0.2722 (795/2921) 1 Intact * Os_TE_651557 Chr11 4545825 4545824 + ORSgTEMT02900114 314 0.7428 (2207/2971) 0 * * Os_TE_651556 Chr11 4545636 4545637 + HARB-1_OS 5166 0.0003 (1/2901) 0 * Os_TE_651555 Os_TE_651555 Chr11 4545634 4545633 - HARB-1_OS 5166 0.0007 (2/2954) 0 * Os_TE_651556 Os_TE_651554 Chr11 4545588 4545587 + ORSgTETNOOT02019 240 0.2932 (862/2940) 0 * * Os_TE_651528 Chr11 4536428 4536427 + RIRE5-LTR_OS 6427 0.0156 (41/2624) 0 * * Os_TE_651527 Chr11 4536327 4536328 + ORSgTEMT00600272 361 0.0067 (20/2969) 0 * * Os_TE_651525 Chr11 4536182 4536183 - ORSgTETNOOT02417 265 0.0047 (4/859) 0 * * Os_TE_651523 Chr11 4535999 4536000 + MPING 430 0.0012 (1/861) 0 * Os_TE_651522 Os_TE_651522 Chr11 4535997 4535996 - MPING 430 0.0012 (1/862) 0 * Os_TE_651523 Os_TE_651521 Chr11 4535787 4535788 + ORSgTEMT01400018 210 0.0246 (21/854) 0 * * Os_TE_651513 Chr11 4535153 4535154 + INDITTO 263 0.0037 (11/2950) 0 * * Os_TE_651510 Chr11 4534872 4535002 + ORSgTEMT00500610 153 0.2708 (803/2965) 1 Intact * Os_TE_651509 Chr11 4534585 4533255 - TNR3 1536 0.2515 (735/2923) 1 Intact * Os_TE_651491 Chr11 4527764 4527765 + AMYLTP 383 0.7335 (2174/2964) 0 * * Os_TE_651488 Chr11 4527549 4527550 - RIREX_LTR 8828 0.0003 (1/2945) 0 * Os_TE_651487 Os_TE_651487 Chr11 4527545 4527544 + RIREX_LTR 8828 0.0003 (1/2965) 0 * Os_TE_651488 Os_TE_651473 Chr11 4524514 4524513 - INDITTO 263 0.0035 (10/2876) 0 * * Os_TE_651470 Chr11 4522964 4522807 + ORSgTEMT01700741 196 0.2775 (811/2923) 1 Intact Os_TE_651468 Os_TE_651468 Chr11 4522807 4522964 + ORSgTEMT01701668 154 0.2970 (818/2754) 1 Intact Os_TE_651470 Os_TE_651464 Chr11 4519772 4519773 - ORSgTEMT00901723 248 0.0012 (1/829) 0 * * Os_TE_651444 Chr11 4503505 4503504 - ORSgTEMT00900737 249 0.7427 (2194/2954) 0 * * Os_TE_651434 Chr11 4501763 4501764 - TNR3 1536 0.0103 (17/1653) 0 * Os_TE_651433 Os_TE_651433 Chr11 4501761 4501760 + TNR3 1536 0.0172 (14/813) 0 * Os_TE_651434 Os_TE_651431 Chr11 4501734 4501235 - ORSgTEMT00900099 250 0.3570 (795/2227) 1 Intact Os_TE_651425 Os_TE_651425 Chr11 4501235 4501332 - ORSgTEMT00901723 248 0.2729 (812/2975) 1 Intact Os_TE_651431 Os_TE_651415 Chr11 4500633 4500873 + DITTO3 260 0.2856 (816/2857) 1 Intact * Os_TE_651413 Chr11 4500578 4500579 - STOWAWAY10_OS 259 0.7292 (2119/2906) 0 * * Os_TE_651409 Chr11 4499472 4499473 + ORSgTEMT00900453 262 0.0241 (19/787) 0 * * Os_TE_651401 Chr11 4496604 4496603 - SZ-37_LTR 12001 0.8683 (2222/2559) 0 * * Os_TE_651377 Chr11 4487141 4487836 + STOWAWAY18_OS 216 0.2702 (809/2994) 1 Intact * Os_TE_651365 Chr11 4483509 4483667 - ORSgTEMT01701195 144 0.2736 (773/2825) 1 Intact * Os_TE_651355 Chr11 4479115 4479114 + ORSgTEMT01601525 239 0.0010 (3/2930) 0 * * Os_TE_651313 Chr11 4470948 4470949 - MPING 430 0.0004 (1/2457) 0 * Os_TE_651312 Os_TE_651312 Chr11 4470946 4470945 + MPING 430 0.0008 (2/2463) 0 * Os_TE_651313 Os_TE_651298 Chr11 4468567 4468566 - ORSgTEMT00901723 248 0.1731 (508/2934) 0 * Os_TE_651297 Os_TE_651297 Chr11 4468566 4468567 - DITTO 244 0.1763 (515/2921) 0 * Os_TE_651298 Os_TE_651296 Chr11 4468464 4468463 + NDNA1TNA_OS 334 0.1867 (551/2951) 0 * * Os_TE_651295 Chr11 4468212 4468213 + ORSgTEMT00101674 340 0.0057 (17/2972) 0 * * Os_TE_651290 Chr11 4462860 4459083 + COPIA2-LTR_OS 6433 0.2567 (697/2715) 1 Intact Os_TE_651287 Os_TE_651287 Chr11 4459081 4462860 - COPIA2-LTR_OS 6433 0.2851 (703/2466) 1 Intact Os_TE_651290 Os_TE_651275 Chr11 4453165 4453166 - DS-RICE2N 613 0.0047 (11/2317) 0 * Os_TE_651274 Os_TE_651274 Chr11 4453158 4453157 + DS-RICE2N 613 0.1973 (563/2853) 0 * Os_TE_651275 Os_TE_651266 Chr11 4450081 4449844 - ORSgTEMT01602413 239 0.6749 (2001/2965) 1 Intact * Os_TE_651264 Chr11 4449774 4449629 + ORSgTEMT00502094 140 0.6645 (1911/2876) 1 Intact Os_TE_651262 Os_TE_651262 Chr11 4449629 4449771 + ORSgTEMT00502327 143 0.8028 (1974/2459) 1 Intact Os_TE_651264 Os_TE_651250 Chr11 4446421 4446422 + ORSgTETNOOT00908 242 0.0024 (7/2938) 0 * * Os_TE_651249 Chr11 4446296 4446295 - ORSgTEMT01602467 227 0.3359 (1002/2983) 0 * Os_TE_651248 Os_TE_651248 Chr11 4446294 4446295 - ORSgTEMT01602467 227 0.3231 (958/2965) 0 * Os_TE_651249 Os_TE_651246 Chr11 4446223 4446222 + NDNA1TNA_OS 334 0.1839 (546/2969) 0 * * Os_TE_651245 Chr11 4445907 4445906 - ORSgTEMT01602413 239 0.0024 (5/2058) 0 * * Os_TE_651242 Chr11 4445747 4445900 + ORSgTEMT01700513 151 0.6821 (2034/2982) 1 Intact * Os_TE_651222 Chr11 4441654 4441416 + ORSgTEMT01602181 239 0.8207 (1977/2409) 1 Intact Os_TE_651221 Os_TE_651221 Chr11 4441416 4441654 + ORSgTEMT01602181 239 0.7339 (1227/1672) -1 Intact Os_TE_651222 Os_TE_651210 Chr11 4437027 4437026 - STOWAWAY51_OS 246 0.0003 (1/2967) 0 * * Os_TE_651202 Chr11 4434832 4434833 + CACTA-H 1152 0.0014 (4/2922) 0 * Os_TE_651201 Os_TE_651201 Chr11 4434830 4434829 - CACTA-M 1129 0.0014 (4/2924) 0 * Os_TE_651202 Os_TE_651200 Chr11 4434463 4434462 - ORSgTEMT01600639 228 0.3365 (985/2927) 0 * Os_TE_651199 Os_TE_651199 Chr11 4434461 4434462 + ORSgTEMT01600102 237 0.3210 (922/2872) 0 * Os_TE_651200 Os_TE_651198 Chr11 4431671 4431672 + MPING 430 0.0003 (1/2992) 0 * Os_TE_651197 Os_TE_651197 Chr11 4431669 4431668 - MPING 430 0.0004 (1/2771) 0 * Os_TE_651198 Os_TE_651189 Chr11 4427502 4427501 + STOWAWAY51_OS 246 0.4481 (1309/2921) 0 * * Os_TE_651186 Chr11 4425985 4425986 + WUWU 113 0.4483 (1340/2989) 0 * Os_TE_651185 Os_TE_651185 Chr11 4425977 4425976 + WUWU 113 0.4340 (1275/2938) 0 * Os_TE_651186 Os_TE_651172 Chr11 4423938 4423738 - ORSgTEMT01400038 210 0.2226 (661/2970) 1 Intact Os_TE_651171 Os_TE_651171 Chr11 4423703 4423937 - ORSgTEMT01400014 209 0.2227 (664/2982) 1 Intact Os_TE_651172 Os_TE_651148 Chr11 4410581 4410580 - OSLINE1-2 7128 0.0017 (5/2993) 0 * * Os_TE_651141 Chr11 4407149 4407148 - ORSgTETN00100078 209 0.0003 (1/2983) 0 * * Os_TE_651132 Chr11 4405191 4405192 - ORMOSIA 482 0.0024 (7/2929) 0 * * Os_TE_651119 Chr11 4401417 4401418 + ORSgTEMT01700012 149 0.0023 (7/2986) 0 * * Os_TE_651118 Chr11 4401396 4401395 + ORSgTEMT01701056 154 0.0020 (6/2981) 0 * * Os_TE_651116 Chr11 4401382 4401383 + RIREX_LTR 8828 0.0044 (13/2986) 0 * Os_TE_651115 Os_TE_651115 Chr11 4401378 4401377 - RIREX_LTR 8828 0.0044 (13/2985) 0 * Os_TE_651116 Os_TE_651094 Chr11 4386395 4386396 - COWARD-3 221 0.6692 (2003/2993) 0 * * Os_TE_651090 Chr11 4385147 4384427 + MUDRN1_OS 764 0.7384 (1050/1422) 1 Intact * Os_TE_651070 Chr11 4377691 4377692 - NDNA1TNA_OS 334 0.0057 (17/2979) 0 * Os_TE_651069 Os_TE_651069 Chr11 4377689 4377688 + NDNA1TNA_OS 334 0.0057 (17/2975) 0 * Os_TE_651070 Os_TE_651067 Chr11 4376213 4376214 + NDNA1TNA_OS 334 0.0502 (132/2631) 0 * Os_TE_651066 Os_TE_651066 Chr11 4376211 4376210 - NDNA1TNA_OS 334 0.0424 (112/2639) 0 * Os_TE_651067 Os_TE_651061 Chr11 4374435 4374297 + ORSgTEMT00500476 150 0.8457 (2444/2890) 1 Intact * Os_TE_651059 Chr11 4372994 4372750 - STOWAWAY44_OS 240 0.8135 (2351/2890) 1 Intact * Os_TE_651056 Chr11 4372667 4372668 - STOWAWAY15_OS 145 0.0478 (117/2447) 0 * * Os_TE_651027 Chr11 4368461 4368462 + ORSgTETNOOT00908 242 0.0054 (16/2956) 0 * * Os_TE_651026 Chr11 4368339 4368340 - COPI2_LTR 4733 0.0003 (1/2974) 0 * * Os_TE_651023 Chr11 4367791 4367792 + COPIA2-LTR_OS 6433 0.0004 (1/2486) -1 * * Os_TE_651019 Chr11 4366546 4366547 - TRUNCATOR 2918 0.0519 (142/2737) 0 * * Os_TE_651010 Chr11 4363604 4363605 + COPIA2-LTR_OS 6433 0.0003 (1/2986) 0 * Os_TE_651009 Os_TE_651009 Chr11 4363600 4363599 - COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * Os_TE_651010 Os_TE_650958 Chr11 4349854 4349855 - INDITTO 263 0.0071 (21/2946) 0 * * Os_TE_650923 Chr11 4342410 4342411 - ORSgTETN00200001 10994 0.0017 (5/2992) 0 * Os_TE_650922 Os_TE_650922 Chr11 4342408 4342407 + SPMLIKE 10989 0.0020 (6/2994) 0 * Os_TE_650923 Os_TE_650899 Chr11 4334789 4334788 + SPMLIKE 10989 0.0020 (6/2998) 0 * * Os_TE_650896 Chr11 4333431 4333432 + COPI1_LTR 4721 0.0007 (2/2980) 0 * * Os_TE_650895 Chr11 4331951 4331950 + STOWAWAY50_OS 174 0.0007 (2/2992) 0 * * Os_TE_650893 Chr11 4330846 4330845 - ORSgTEMT02400246 177 0.1125 (333/2961) 0 * Os_TE_650892 Os_TE_650892 Chr11 4330842 4330843 + ORSgTEMT02400014 229 0.1131 (336/2970) 0 * Os_TE_650893 Os_TE_650870 Chr11 4317397 4318500 + ORSgTETN00200005 1121 0.3923 (1035/2638) 1 Intact * Os_TE_650868 Chr11 4316815 4316816 + WUWU 113 0.6632 (1949/2939) 0 * Os_TE_650867 Os_TE_650867 Chr11 4316807 4316806 + WUWU 113 0.6650 (1971/2964) 0 * Os_TE_650868 Os_TE_650848 Chr11 4307276 4310365 - SEVERIN-2 1952 0.3331 (991/2975) 1 Intact * Os_TE_650845 Chr11 4306330 4306673 - OLO24 345 0.3349 (998/2980) 1 Intact * Os_TE_650842 Chr11 4305279 4305280 + MUDRN2_OS 756 0.4559 (1343/2946) 0 * Os_TE_650841 Os_TE_650841 Chr11 4305276 4305275 - MUDRN1_OS 764 0.4486 (1321/2945) 0 * Os_TE_650842 Os_TE_650837 Chr11 4298382 4298150 - ORSgTEMT01601564 233 0.3997 (1034/2587) 1 Intact * Os_TE_650833 Chr11 4292777 4292936 + STOWAWAY47_OS 148 0.4911 (1049/2136) 1 Intact * Os_TE_650831 Chr11 4289771 4289770 - CACTA-J 1159 0.0003 (1/2936) 0 * * Os_TE_650829 Chr11 4287810 4287809 + ORSgTEMT00900266 245 0.0003 (1/2942) 0 * * Os_TE_650822 Chr11 4286376 4286377 + COPI2_LTR 4733 0.0171 (51/2984) 0 * Os_TE_650821 Os_TE_650821 Chr11 4286372 4286371 - COPI2_LTR 4733 0.0184 (55/2987) 0 * Os_TE_650822 Os_TE_650817 Chr11 4284674 4284673 + STOWAWAY21_OS 243 0.0024 (7/2922) 0 * * Os_TE_650813 Chr11 4284477 4284478 + Mudr5_OS 5952 0.6777 (1966/2901) 0 * * Os_TE_650810 Chr11 4282819 4265353 - RETROSAT4_LTR 13504 0.3456 (1036/2998) 1 Intact Os_TE_650795 Os_TE_650795 Chr11 4265353 4282819 + RETROSAT4_LTR 13504 0.3427 (1022/2982) 1 Intact Os_TE_650810 Os_TE_650793 Chr11 4264289 4264288 - COPI2_LTR 4733 0.0003 (1/2989) 0 * * Os_TE_650790 Chr11 4264144 4264143 - COPIA2-LTR_OS 6433 0.0017 (5/2998) 0 * * Os_TE_650788 Chr11 4262600 4262599 + ORSgTEMT01602181 239 0.6689 (1990/2975) 0 * * Os_TE_650784 Chr11 4259010 4258543 + OSMU5 4881 0.3399 (989/2910) 1 Intact Os_TE_650783 Os_TE_650783 Chr11 4258543 4259010 + OSMU5 4881 0.3549 (1037/2922) 1 Intact Os_TE_650784 Os_TE_650770 Chr11 4248396 4248063 + NDNA1TNA_OS 334 0.3595 (1015/2823) 1 Intact Os_TE_650769 Os_TE_650769 Chr11 4248060 4248397 + ORSgTEMT00101674 340 0.3398 (1011/2975) 1 Intact Os_TE_650770 Os_TE_650761 Chr11 4246255 4246254 + STOWAWAY44_OS 240 0.0004 (1/2527) 0 * * Os_TE_650757 Chr11 4245793 4245792 + ORSgTEMT00502094 140 0.0025 (7/2808) 0 * * Os_TE_650756 Chr11 4245781 4245782 + ORSgTEMT01601122 212 0.6538 (1898/2903) 0 * * Os_TE_650753 Chr11 4245049 4245309 + ORSgTETNOOT00908 242 0.3303 (972/2943) 1 Intact * Os_TE_650751 Chr11 4244900 4244901 - YOUREN 286 0.6830 (1989/2912) 0 * * Os_TE_650738 Chr11 4232750 4232597 + ORSgTEMT01701591 154 0.3467 (1004/2896) 1 Intact * Os_TE_650734 Chr11 4232473 4232474 - MPING 430 0.0044 (13/2976) 0 * Os_TE_650733 Os_TE_650733 Chr11 4232471 4232470 + MPING 430 0.0048 (14/2931) 0 * Os_TE_650734 Os_TE_650731 Chr11 4231708 4231291 + ORSgTEMT00300069 394 0.3388 (1011/2984) 1 Intact Os_TE_650729 Os_TE_650729 Chr11 4231289 4231702 + ORSgTEMT00300063 413 0.3552 (995/2801) 1 Intact Os_TE_650731 Os_TE_650728 Chr11 4231251 4231250 - OSTE17 734 0.6375 (1757/2756) 0 * * Os_TE_650723 Chr11 4230431 4230432 - COPIA2-LTR_OS 6433 0.0121 (13/1070) 0 * Os_TE_650722 Os_TE_650722 Chr11 4230427 4230426 + COPIA2-LTR_OS 6433 0.0125 (13/1041) 0 * Os_TE_650723 Os_TE_650710 Chr11 4226135 4225606 - CLOUD-4 520 0.4400 (1038/2359) 1 Intact * Os_TE_650707 Chr11 4224832 4224569 - STOWAWAY41_OS 264 0.4644 (997/2147) 1 Intact Os_TE_650704 Os_TE_650704 Chr11 4224576 4224832 - STOWAWAY41_OS 264 0.3449 (1017/2949) 1 Intact Os_TE_650707 Os_TE_650699 Chr11 4218899 4218900 + COPIA2-LTR_OS 6433 0.0011 (1/935) -1 * Os_TE_650698 Os_TE_650698 Chr11 4218895 4218894 - COPIA2-LTR_OS 6433 0.0011 (1/939) -1 * Os_TE_650699 Os_TE_650687 Chr11 4215230 4214118 + SZ-5LTR 1223 0.3462 (1015/2932) 1 Intact Os_TE_650684 Os_TE_650684 Chr11 4214118 4215228 - SZ-5LTR 1223 0.3527 (1045/2963) 1 Intact Os_TE_650687 Os_TE_650666 Chr11 4206799 4207574 - MUDRN1_OS 764 0.3311 (982/2966) 1 Intact * Os_TE_650665 Chr11 4206108 4193338 + SZ-43LTR 4039 0.3407 (1015/2979) 1 Intact Os_TE_650660 Os_TE_650660 Chr11 4193338 4206108 - SZ-43LTR 4039 0.3416 (1014/2968) 1 Intact Os_TE_650665 Os_TE_650656 Chr11 4192724 4192723 - SINE6_OS 119 0.6728 (1986/2952) 0 * * Os_TE_650652 Chr11 4192096 4192432 + ORSgTEMT00100428 339 0.3414 (1016/2976) 1 Intact * Os_TE_650642 Chr11 4186544 4186545 - MERMITE18A 532 0.5140 (1048/2039) 0 * * Os_TE_650641 Chr11 4186177 4186178 - ORSgTEMT01600742 234 0.6638 (1773/2671) -1 * * Os_TE_650639 Chr11 4185558 4185557 - TAMI2 254 0.5255 (1104/2101) 0 * * Os_TE_650623 Chr11 4178660 4178659 - SEVERIN-2 1952 0.0048 (5/1043) 0 * * Os_TE_650619 Chr11 4176297 4176296 + SPMLIKE 10989 0.0003 (1/2949) 0 * * Os_TE_650612 Chr11 4175300 4175299 + TNR3 1536 0.0029 (7/2418) 0 * * Os_TE_650605 Chr11 4174053 4173215 - COPIA2-LTR_OS 6433 0.2600 (702/2700) 1 Solo_LTR Os_TE_650604 Os_TE_650604 Chr11 4173215 4174053 + COPIA2-LTR_OS 6433 0.2696 (731/2711) 1 Solo_LTR Os_TE_650605 Os_TE_650599 Chr11 4172587 4172586 - ORSgTEMT00502478 130 0.0209 (57/2727) 0 * * Os_TE_650598 Chr11 4172567 4172568 + SPMLIKE 10989 0.0004 (1/2725) 0 * * Os_TE_650596 Chr11 4172461 4172246 - STOWAWAY18_OS 216 0.2784 (760/2730) 1 Intact Os_TE_650594 Os_TE_650594 Chr11 4172246 4172461 + STOWAWAY18_OS 216 0.2777 (759/2733) 1 Intact Os_TE_650596 Os_TE_650570 Chr11 4168341 4168342 - ORSgTETN00200001 10994 0.0195 (58/2982) 0 * Os_TE_650569 Os_TE_650569 Chr11 4168339 4168338 + SPMLIKE 10989 0.0221 (66/2987) 0 * Os_TE_650570 Os_TE_650556 Chr11 4167420 4167419 + ORSgTEMT00500560 148 0.0020 (6/2987) 0 * * Os_TE_650548 Chr11 4166905 4166906 - TRUNCATOR2_LTR 2904 0.1183 (353/2984) 0 * * Os_TE_650491 Chr11 4154975 4154976 + COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * * Os_TE_650487 Chr11 4153923 4154184 - ORSgTEMT00100758 259 0.4518 (979/2167) 1 Intact * Os_TE_650481 Chr11 4150614 4150613 - COPI2_LTR 4733 0.0020 (6/2996) 0 * * Os_TE_650467 Chr11 4141768 4141767 + COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * * Os_TE_650441 Chr11 4130863 4130862 + STOWAWAY49_OS 241 0.0033 (10/2989) 0 * * Os_TE_650431 Chr11 4127650 4127651 + ORSiTERTOOT00226 792 0.0003 (1/2971) 0 * * Os_TE_650419 Chr11 4125296 4125295 + ORSiTERTOOT00320 3349 0.6035 (1808/2996) 0 * * Os_TE_650376 Chr11 4108792 4108793 - OSLINE1-5 4688 0.6208 (1829/2946) 0 * * Os_TE_650337 Chr11 4091057 4091058 + F770 284 0.2177 (646/2968) 0 * * Os_TE_650327 Chr11 4085181 4085180 + ORSiTERTOOT00004 4000 0.0004 (1/2826) 0 * * Os_TE_650326 Chr11 4083654 4083653 + STOWAWAY51_OS 246 0.0003 (1/2998) 0 * Os_TE_650325 Os_TE_650325 Chr11 4083648 4083649 + ORSgTEMT01601591 242 0.0003 (1/2999) 0 * Os_TE_650326 Os_TE_650320 Chr11 4082447 4082448 + SC-8_LTR 4951 0.0003 (1/2996) 0 * * Os_TE_650303 Chr11 4072269 4072268 - SC-8_LTR 4951 0.0004 (1/2772) 0 * * Os_TE_650298 Chr11 4067550 4067549 + SEVERIN-2 1952 0.0020 (6/2984) 0 * * Os_TE_650297 Chr11 4066867 4066868 - SC-8_LTR 4951 0.0007 (2/2983) 0 * * Os_TE_650294 Chr11 4065549 4065550 - OSR3_LTR 5201 0.0017 (5/2995) 0 * Os_TE_650293 Os_TE_650293 Chr11 4065545 4065544 + OSR3_LTR 5201 0.0017 (5/2994) 0 * Os_TE_650294 Os_TE_650289 Chr11 4064563 4064564 + SC-8_LTR 4951 0.0013 (4/2990) 0 * Os_TE_650288 Os_TE_650288 Chr11 4064559 4064558 - SC-8_LTR 4951 0.0013 (4/2990) 0 * Os_TE_650289 Os_TE_650275 Chr11 4061053 4051830 - ORSgTETN00200001 10994 0.2626 (777/2959) 1 Intact Os_TE_650271 Os_TE_650271 Chr11 4051831 4061053 + SPMLIKE 10989 0.2694 (800/2970) 1 Intact Os_TE_650275 Os_TE_650270 Chr11 4051702 4051701 - TYPEH 309 0.0020 (6/2983) 0 * * Os_TE_650258 Chr11 4047699 4047698 - INDITTO 263 0.0003 (1/2984) 0 * * Os_TE_650241 Chr11 4043977 4043978 - MPING 430 0.0014 (4/2960) 0 * Os_TE_650240 Os_TE_650240 Chr11 4043975 4043974 + MPING 430 0.0007 (2/2956) 0 * Os_TE_650241 Os_TE_650220 Chr11 4033683 4033684 - SC-7_LTR 4431 0.0003 (1/2992) 0 * Os_TE_650219 Os_TE_650219 Chr11 4033679 4033678 + SC-7_LTR 4431 0.0003 (1/2985) 0 * Os_TE_650220 Os_TE_650213 Chr11 4030055 4030056 + ORSiTERTOOT00112 4608 0.0003 (1/2977) 0 * * Os_TE_650211 Chr11 4029743 4029744 + ORSiTERTOOT00333 4719 0.0003 (1/2979) 0 * Os_TE_650210 Os_TE_650210 Chr11 4029740 4029739 - ORSiTERTOOT00333 4719 0.0003 (1/2974) 0 * Os_TE_650211 Os_TE_650209 Chr11 4028639 4028640 - SZ-54_LTR 5203 0.0003 (1/2968) 0 * * Os_TE_650200 Chr11 4022649 4022650 - ORSiTETNOOT00134 607 0.0060 (17/2829) 0 * * Os_TE_650169 Chr11 4012927 4012928 - MPING 430 0.0020 (6/2940) 0 * Os_TE_650168 Os_TE_650168 Chr11 4012925 4012924 + MPING 430 0.0020 (6/2954) 0 * Os_TE_650169 Os_TE_650167 Chr11 4012759 4012760 - RIREX_LTR 8828 0.0010 (3/2986) 0 * Os_TE_650166 Os_TE_650166 Chr11 4012755 4012754 + RIREX_LTR 8828 0.0007 (2/2984) 0 * Os_TE_650167 Os_TE_650163 Chr11 4012264 4012265 + ORSgTEMT00600272 361 0.0018 (5/2762) 0 * Os_TE_650162 Os_TE_650162 Chr11 4012262 4012261 - ORSgTEMT00600085 364 0.0017 (5/2858) 0 * Os_TE_650163 Os_TE_650150 Chr11 4009650 4009649 + STOWAWAY45_OS 266 0.0024 (7/2976) 0 * Os_TE_650149 Os_TE_650149 Chr11 4009647 4009648 + STOWAWAY45_OS 266 0.0024 (7/2976) 0 * Os_TE_650150 Os_TE_650137 Chr11 4004098 4004099 + MPING 430 0.0003 (1/2994) 0 * Os_TE_650136 Os_TE_650136 Chr11 4004096 4004095 - MPING 430 0.0003 (1/2991) 0 * Os_TE_650137 Os_TE_650106 Chr11 3986526 3986527 + JINHUA 479 0.0440 (131/2977) 0 * * Os_TE_650073 Chr11 3961434 3977063 + RETROSAT2LTR 12796 0.2709 (800/2953) 1 Intact * Os_TE_650065 Chr11 3957954 3957955 + COPIA2-LTR_OS 6433 0.0003 (1/2869) 0 * Os_TE_650064 Os_TE_650064 Chr11 3957950 3957949 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_650065 Os_TE_650062 Chr11 3957078 3957077 - RIREX_LTR 8828 0.0022 (6/2723) 0 * * Os_TE_650060 Chr11 3956628 3956629 + COPIA2-LTR_OS 6433 0.0025 (7/2753) 0 * Os_TE_650059 Os_TE_650059 Chr11 3956624 3956623 - COPIA2-LTR_OS 6433 0.0025 (7/2838) 0 * Os_TE_650060 Os_TE_650050 Chr11 3954770 3954771 - OSLINE1-4 4779 0.0455 (136/2987) 0 * * Os_TE_650039 Chr11 3949929 3949930 - ENSPM3_OS 10837 0.0025 (7/2847) 0 * * Os_TE_649998 Chr11 3933172 3933171 + ORSgTEMT00300122 416 0.0415 (120/2893) 0 * * Os_TE_649964 Chr11 3923508 3923509 + COPIA2-LTR_OS 6433 0.0003 (1/2959) 0 * Os_TE_649963 Os_TE_649963 Chr11 3923504 3923503 - COPIA2-LTR_OS 6433 0.0003 (1/2951) 0 * Os_TE_649964 Os_TE_649962 Chr11 3923240 3923239 - ORSgTEMT02400246 177 0.0004 (1/2837) 0 * Os_TE_649961 Os_TE_649961 Chr11 3923239 3923240 - TYPEM 227 0.0003 (1/2938) 0 * Os_TE_649962 Os_TE_649960 Chr11 3922967 3922968 - ORSgTETNOOT00053 263 0.0395 (117/2964) 0 * Os_TE_649959 Os_TE_649959 Chr11 3922965 3922964 - INDITTO 263 0.0406 (120/2957) 0 * Os_TE_649960 Os_TE_649933 Chr11 3913335 3913334 + STOWAWAY13_OS 251 0.0004 (1/2798) 0 * * Os_TE_649901 Chr11 3903185 3903186 - RIRE2_LTR 11306 0.0003 (1/2913) 0 * * Os_TE_649876 Chr11 3893067 3893068 - COPI2_LTR 4733 0.0020 (6/2994) 0 * Os_TE_649875 Os_TE_649875 Chr11 3893063 3893062 + COPI2_LTR 4733 0.0020 (6/2994) 0 * Os_TE_649876 Os_TE_649867 Chr11 3891874 3891875 + COPI2_LTR 4733 0.0010 (3/2995) 0 * Os_TE_649866 Os_TE_649866 Chr11 3891870 3891869 - COPI2_LTR 4733 0.0008 (2/2588) 0 * Os_TE_649867 Os_TE_649860 Chr11 3888410 3888411 - SZ-35LTR 3853 0.6261 (1855/2963) 0 * * Os_TE_649855 Chr11 3887668 3887669 - RETROSAT4_LTR 13504 0.6357 (1888/2970) 0 * Os_TE_649854 Os_TE_649854 Chr11 3887664 3887663 + RETROSAT4_LTR 13504 0.6082 (1703/2800) 0 * Os_TE_649855 Os_TE_649851 Chr11 3887501 3887500 + RIREX_LTR 8828 0.0003 (1/2990) 0 * * Os_TE_649839 Chr11 3881024 3879611 + OSTE33 1012 0.2267 (663/2925) 1 Intact Os_TE_649838 Os_TE_649838 Chr11 3879611 3881024 + OSTE33 1012 0.2401 (713/2969) 1 Intact Os_TE_649839 Os_TE_649834 Chr11 3878429 3878430 - RIREX_LTR 8828 0.0007 (2/2952) 0 * Os_TE_649833 Os_TE_649833 Chr11 3878425 3878424 + RIREX_LTR 8828 0.0007 (2/2943) 0 * Os_TE_649834 Os_TE_649831 Chr11 3878382 3878381 - COPIA2-LTR_OS 6433 0.0003 (1/2935) 0 * * Os_TE_649818 Chr11 3875484 3875485 - TEMPINDAS 4259 0.0003 (1/2981) 0 * * Os_TE_649810 Chr11 3873578 3873579 + MPING 430 0.0003 (1/2981) 0 * Os_TE_649809 Os_TE_649809 Chr11 3873576 3873575 - MPING 430 0.0003 (1/2981) 0 * Os_TE_649810 Os_TE_649807 Chr11 3872554 3872553 + CACTA-B 1103 0.0057 (17/2984) 0 * Os_TE_649806 Os_TE_649806 Chr11 3872553 3872554 - CACTA-H 1152 0.0057 (17/2984) 0 * Os_TE_649807 Os_TE_649789 Chr11 3867805 3867806 + GYPSY-A_LTR 8951 0.0140 (17/1216) 0 * * Os_TE_649782 Chr11 3866679 3866680 + MPING 430 0.0003 (1/2980) 0 * Os_TE_649781 Os_TE_649781 Chr11 3866677 3866676 - MPING 430 0.0003 (1/2987) 0 * Os_TE_649782 Os_TE_649769 Chr11 3863538 3863537 + CACTA-H 1152 0.0054 (16/2985) 0 * * Os_TE_649756 Chr11 3860064 3860065 - ORSgTETNOOT00053 263 0.0723 (215/2973) 0 * Os_TE_649755 Os_TE_649755 Chr11 3860062 3860061 - INDITTO 263 0.0704 (209/2967) 0 * Os_TE_649756 Os_TE_649746 Chr11 3858368 3858367 - ORSgTETNOOT00790 253 0.7979 (2385/2989) 0 * * Os_TE_649739 Chr11 3855458 3855459 + COPIA2-LTR_OS 6433 0.0003 (1/2983) 0 * Os_TE_649738 Os_TE_649738 Chr11 3855454 3855453 - COPIA2-LTR_OS 6433 0.0003 (1/2982) 0 * Os_TE_649739 Os_TE_649733 Chr11 3852524 3852523 - ORSiTERTOOT00136 528 0.0003 (1/2974) 0 * * Os_TE_649720 Chr11 3845773 3845774 - HARB-1_OS 5166 0.0007 (2/2986) 0 * * Os_TE_649696 Chr11 3834940 3834941 - NDNA1TNA_OS 334 0.0535 (142/2652) 0 * * Os_TE_649693 Chr11 3833960 3833959 + ORSgTEMT01602511 237 0.7861 (2304/2931) 0 * * Os_TE_649675 Chr11 3829240 3829241 - TRUNCATOR2_LTR 2904 0.0010 (3/2966) 0 * Os_TE_649674 Os_TE_649674 Chr11 3829236 3829235 + ORSiCMCM00100019 2717 0.0007 (2/2959) 0 * Os_TE_649675 Os_TE_649651 Chr11 3821103 3821104 + TYPEU2 382 0.0188 (18/958) 0 * * Os_TE_649623 Chr11 3808765 3808766 - OSTE24 683 0.5865 (1552/2646) 0 * Os_TE_649622 Os_TE_649622 Chr11 3808754 3808753 - OSTE24 683 0.3949 (740/1874) 0 * Os_TE_649623 Os_TE_649619 Chr11 3806211 3806210 - TRSA_OS 353 0.0007 (2/2966) 0 * * Os_TE_649605 Chr11 3801439 3801440 + ORSgTEMT01701547 160 0.0023 (7/2987) 0 * * Os_TE_649593 Chr11 3795049 3795050 - RETRO2_LTR 12874 0.0003 (1/2982) 0 * Os_TE_649592 Os_TE_649592 Chr11 3795045 3795044 + RETRO2_LTR 12874 0.0003 (1/2970) 0 * Os_TE_649593 Os_TE_649586 Chr11 3794392 3794393 - INDITTO 263 0.0010 (3/2992) 0 * Os_TE_649585 Os_TE_649585 Chr11 3794390 3794389 + INDITTO 263 0.0010 (3/2996) 0 * Os_TE_649586 Os_TE_649573 Chr11 3787432 3787433 + TWIFB1 3737 0.0003 (1/2995) 0 * * Os_TE_649571 Chr11 3786358 3786359 - SC-3_LTR 5748 0.0003 (1/2983) 0 * Os_TE_649570 Os_TE_649570 Chr11 3786354 3786353 + ORSiTERTOOT00296 5553 0.0003 (1/2979) 0 * Os_TE_649571 Os_TE_649568 Chr11 3784346 3784347 + TELIA 141 0.0003 (1/2976) 0 * Os_TE_649567 Os_TE_649567 Chr11 3784338 3784337 - TELIA 141 0.0003 (1/2974) 0 * Os_TE_649568 Os_TE_649563 Chr11 3781784 3781783 + ORSgTEMT01701591 154 0.6522 (1945/2982) 0 * * Os_TE_649550 Chr11 3780064 3780063 + ORSgTEMT01602181 239 0.0483 (144/2980) 0 * Os_TE_649549 Os_TE_649549 Chr11 3780061 3780062 - ORSgTEMT01601432 239 0.0484 (144/2978) 0 * Os_TE_649550 Os_TE_649538 Chr11 3775804 3775803 + ORSgTEMT00502101 146 0.0004 (1/2570) 0 * * Os_TE_649524 Chr11 3773468 3773469 - COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_649523 Os_TE_649523 Chr11 3773464 3773463 + COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_649524 Os_TE_649513 Chr11 3771920 3771919 + SZ-62LTR 3649 0.6290 (1863/2962) 0 * * Os_TE_649512 Chr11 3771640 3771641 + MDR2 6967 0.0084 (24/2841) 0 * Os_TE_649511 Os_TE_649511 Chr11 3771631 3771630 - MDR2 6967 0.0081 (23/2841) 0 * Os_TE_649512 Os_TE_649479 Chr11 3763340 3763341 + MPING 430 0.0003 (1/2988) 0 * * Os_TE_649477 Chr11 3762881 3762882 + RIREX_LTR 8828 0.0003 (1/2994) 0 * Os_TE_649476 Os_TE_649476 Chr11 3762877 3762876 - RIREX_LTR 8828 0.0003 (1/2993) 0 * Os_TE_649477 Os_TE_649466 Chr11 3751861 3751862 - SC-3_LTR 5748 0.0003 (1/2975) 0 * Os_TE_649465 Os_TE_649465 Chr11 3751857 3751856 + ORSiTERTOOT00296 5553 0.0003 (1/2979) 0 * Os_TE_649466 Os_TE_649458 Chr11 3744382 3744383 - TYPEM 227 0.0077 (22/2870) 0 * * Os_TE_649449 Chr11 3737362 3737363 + AMYLTP 383 0.0544 (163/2997) 0 * Os_TE_649448 Os_TE_649448 Chr11 3737354 3737353 - AMYLTP 383 0.0557 (167/2996) 0 * Os_TE_649449 Os_TE_649444 Chr11 3736101 3736100 - SZ-35LTR 3853 0.0090 (27/2991) 0 * * Os_TE_649429 Chr11 3725103 3725104 + SZ-48LTR 3632 0.4618 (1361/2947) 0 * Os_TE_649428 Os_TE_649428 Chr11 3725099 3725098 - SZ-48LTR 3632 0.4498 (1308/2908) 0 * Os_TE_649429 Os_TE_649427 Chr11 3723456 3724802 - ENSPM4_OS 11610 0.3876 (1161/2995) 1 Intact * Os_TE_649426 Chr11 3722303 3722304 - COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_649425 Os_TE_649425 Chr11 3722299 3722298 + COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_649426 Os_TE_649394 Chr11 3707868 3707869 + RIREX_LTR 8828 0.0003 (1/2961) 0 * Os_TE_649393 Os_TE_649393 Chr11 3707864 3707863 - RIREX_LTR 8828 0.0003 (1/2957) 0 * Os_TE_649394 Os_TE_649377 Chr11 3698713 3698714 + TRUNCATOR2_LTR 2904 0.0025 (7/2852) 0 * * Os_TE_649375 Chr11 3698552 3698553 - GYPSY-A_LTR 8951 0.0010 (3/2982) 0 * * Os_TE_649352 Chr11 3685526 3685527 + XIKE 594 0.0025 (7/2839) 0 * * Os_TE_649318 Chr11 3675105 3675104 - RIREX_LTR 8828 0.0003 (1/2950) 0 * * Os_TE_649305 Chr11 3666569 3666568 - SC-3_LTR 5748 0.0003 (1/2986) 0 * * Os_TE_649287 Chr11 3657622 3657621 + MERMITEA 1710 0.0124 (37/2986) 0 * * Os_TE_649278 Chr11 3648951 3648950 - ORSgTETNOOT01930 140 0.0161 (35/2172) 0 * Os_TE_649277 Os_TE_649277 Chr11 3648940 3648941 + ORSgTEMT00502094 140 0.0140 (38/2721) 0 * Os_TE_649278 Os_TE_649256 Chr11 3645465 3645464 + COPIA2-LTR_OS 6433 0.0013 (4/2977) 0 * * Os_TE_649247 Chr11 3639666 3639390 - KIDDOC 275 0.7697 (2286/2970) 1 Intact Os_TE_649246 Os_TE_649246 Chr11 3639390 3639666 + KIDDOC 275 0.7617 (2273/2984) 1 Intact Os_TE_649247 Os_TE_649243 Chr11 3637497 3637496 - SC-3_LTR 5748 0.0003 (1/2991) 0 * * Os_TE_649241 Chr11 3635645 3635644 + ORSiTERTOOT00296 5553 0.0003 (1/2994) 0 * * Os_TE_649240 Chr11 3635074 3635075 - SZ-54_LTR 5203 0.0014 (4/2947) 0 * * Os_TE_649239 Chr11 3635045 3635046 - SC-3_LTR 5748 0.0003 (1/2978) 0 * Os_TE_649238 Os_TE_649238 Chr11 3635041 3635040 + ORSiTERTOOT00296 5553 0.0003 (1/2978) 0 * Os_TE_649239 Os_TE_649224 Chr11 3632587 3632688 - OSTE18 129 0.7658 (2259/2950) 1 Intact * Os_TE_649206 Chr11 3626583 3626582 - CACTA-N 987 0.0017 (5/2937) 0 * * Os_TE_649202 Chr11 3625535 3625536 - ORSgTEMT02400246 177 0.1768 (524/2964) 0 * * Os_TE_649186 Chr11 3615617 3611300 + SZ-48LTR 3632 0.4557 (1338/2936) 1 Intact * Os_TE_649172 Chr11 3610059 3610060 + ORSgTEMT01702128 149 0.0004 (1/2853) 0 * * Os_TE_649167 Chr11 3608637 3608638 - CACTA-H 1152 0.0007 (2/2874) 0 * * Os_TE_649139 Chr11 3603236 3602875 + CASTAWAY 364 0.8895 (2206/2480) 1 Intact Os_TE_649135 Os_TE_649135 Chr11 3602875 3603234 + ORSgTEMT00600171 361 0.8566 (2305/2691) 1 Intact Os_TE_649139 Os_TE_649130 Chr11 3602082 3602083 + GYPSY1-LTR_OS 8900 0.0005 (1/1972) 0 * * Os_TE_649115 Chr11 3600442 3599256 - COPIA1-LTR_OS 9292 0.8549 (2415/2825) 1 Solo_LTR * Os_TE_649104 Chr11 3597045 3597046 - STOWAWAY13_OS 251 0.1682 (475/2824) 0 * * Os_TE_649095 Chr11 3596159 3596160 - RIRE2_LTR 11306 0.1719 (497/2891) 0 * Os_TE_649094 Os_TE_649094 Chr11 3596155 3596154 + RIRE2_LTR 11306 0.1746 (505/2893) 0 * Os_TE_649095 Os_TE_649080 Chr11 3592704 3592705 - COPI2_LTR 4733 0.3707 (1075/2900) 0 * Os_TE_649079 Os_TE_649079 Chr11 3592700 3592699 + COPI2_LTR 4733 0.3548 (1017/2866) 0 * Os_TE_649080 Os_TE_649074 Chr11 3589218 3589219 + ORSgTEMT01602637 232 0.1451 (418/2880) 0 * * Os_TE_649072 Chr11 3588948 3588949 - ORSgTEMT00502194 153 0.1449 (417/2877) 0 * Os_TE_649071 Os_TE_649071 Chr11 3588947 3588946 + GAIJIN 147 0.1472 (421/2861) 0 * Os_TE_649072 Os_TE_649070 Chr11 3588887 3588734 - ORSgTEMT01700507 154 0.8632 (2480/2873) 1 Intact * Os_TE_649054 Chr11 3585141 3585142 - CLOUD-2 711 0.1493 (425/2846) 0 * * Os_TE_649053 Chr11 3584824 3584825 + SZ-33LTR 575 0.1477 (424/2871) 0 * * Os_TE_649036 Chr11 3578081 3581083 - TRUNCATOR 2918 0.2043 (574/2809) 1 Intact * Os_TE_649016 Chr11 3574536 3574535 - MPING 430 0.0003 (1/2882) 0 * * Os_TE_649008 Chr11 3573668 3573669 + YOUREN 286 0.3051 (865/2835) 0 * Os_TE_649007 Os_TE_649007 Chr11 3573666 3573665 - YOUREN 286 0.3146 (899/2858) 0 * Os_TE_649008 Os_TE_649002 Chr11 3572911 3572910 - RETROSAT4_LTR 13504 0.0007 (2/2768) 0 * * Os_TE_648987 Chr11 3568945 3568944 + KRISPIE 956 0.0024 (7/2865) 0 * * Os_TE_648946 Chr11 3558328 3558329 + COPI2_LTR 4733 0.0080 (23/2891) 0 * Os_TE_648945 Os_TE_648945 Chr11 3558324 3558323 - COPI2_LTR 4733 0.0079 (23/2895) 0 * Os_TE_648946 Os_TE_648936 Chr11 3549600 3549601 - SC-3_LTR 5748 0.0003 (1/2988) 0 * Os_TE_648935 Os_TE_648935 Chr11 3549596 3549595 + ORSiTERTOOT00296 5553 0.0003 (1/2983) 0 * Os_TE_648936 Os_TE_648934 Chr11 3549345 3549346 - SC-3_LTR 5748 0.0043 (13/2990) 0 * Os_TE_648933 Os_TE_648933 Chr11 3549341 3549340 + ORSiTERTOOT00296 5553 0.0044 (13/2987) 0 * Os_TE_648934 Os_TE_648904 Chr11 3537311 3537310 + ORSiTERTOOT00381 4988 0.0004 (1/2289) 0 * * Os_TE_648901 Chr11 3534621 3534620 + ORSgTEMT01602083 237 0.2589 (758/2928) 0 * * Os_TE_648897 Chr11 3534099 3534098 - ORSgTEMT01702039 162 0.1715 (453/2641) 0 * * Os_TE_648891 Chr11 3533410 3533409 - CPSC2_LTR 5202 0.0004 (1/2579) 0 * * Os_TE_648868 Chr11 3522904 3522903 - ORSgTEMT01600993 233 0.0017 (5/2967) 0 * * Os_TE_648864 Chr11 3519949 3519948 - SC-3_LTR 5748 0.0003 (1/2983) 0 * * Os_TE_648862 Chr11 3518090 3518091 - ORSiTERT00200154 9386 0.1651 (493/2986) 0 * Os_TE_648861 Os_TE_648861 Chr11 3518084 3518083 + TRUNCATOR 2918 0.1683 (504/2994) 0 * Os_TE_648862 Os_TE_648850 Chr11 3517190 3517191 + COPI2_LTR 4733 0.0879 (258/2934) 0 * * Os_TE_648839 Chr11 3512912 3512911 - MERMITEJ 1498 0.0003 (1/2963) 0 * * Os_TE_648836 Chr11 3510768 3510769 + SC-8_LTR 4951 0.0007 (2/2995) 0 * Os_TE_648835 Os_TE_648835 Chr11 3510764 3510763 - SC-8_LTR 4951 0.0007 (2/2996) 0 * Os_TE_648836 Os_TE_648833 Chr11 3505898 3505899 + INDITTO 263 0.0007 (2/2935) 0 * Os_TE_648832 Os_TE_648832 Chr11 3505896 3505895 - INDITTO 263 0.0010 (3/2918) 0 * Os_TE_648833 Os_TE_648816 Chr11 3502874 3502875 + RIREX_LTR 8828 0.0017 (5/2990) 0 * Os_TE_648815 Os_TE_648815 Chr11 3502870 3502869 - RIREX_LTR 8828 0.0020 (6/2992) 0 * Os_TE_648816 Os_TE_648798 Chr11 3496866 3496867 + ORSiTERTOOT00296 5553 0.0003 (1/2993) 0 * Os_TE_648797 Os_TE_648797 Chr11 3496862 3496861 - SC-3_LTR 5748 0.0003 (1/2994) 0 * Os_TE_648798 Os_TE_648788 Chr11 3485678 3486535 - MUDRN1_OS 764 0.2662 (777/2919) 1 Intact * Os_TE_648783 Chr11 3484081 3484082 - RIREX_LTR 8828 0.0007 (2/2944) 0 * Os_TE_648782 Os_TE_648782 Chr11 3484077 3484076 + RIREX_LTR 8828 0.0007 (2/2945) 0 * Os_TE_648783 Os_TE_648779 Chr11 3483657 3483658 + SZ-55_LTR 10318 0.0003 (1/2995) 0 * Os_TE_648778 Os_TE_648778 Chr11 3483653 3483652 - SZ-55_LTR 10318 0.0003 (1/2952) 0 * Os_TE_648779 Os_TE_648763 Chr11 3473171 3474906 - SZ-55_LTR 10318 0.2685 (797/2968) 1 Solo_LTR * Os_TE_648737 Chr11 3460293 3460292 - OSLINE1_1 4159 0.1498 (310/2069) 0 * * Os_TE_648720 Chr11 3450798 3451940 - OSMU10 1143 0.4444 (827/1861) 1 Intact * Os_TE_648691 Chr11 3435437 3435438 + STOWAWAY9_OS 235 0.0011 (1/932) 0 * * Os_TE_648678 Chr11 3424104 3424105 + TWIFB1 3737 0.0003 (1/2974) 0 * * Os_TE_648676 Chr11 3422529 3422530 + ORSiTERTOOT00381 4988 0.0011 (3/2823) 0 * Os_TE_648675 Os_TE_648675 Chr11 3422525 3422524 - SC-8_LTR 4951 0.0010 (3/2987) 0 * Os_TE_648676 Os_TE_648670 Chr11 3418439 3418438 - ORSgTETN00200001 10994 0.0003 (1/2972) 0 * * Os_TE_648668 Chr11 3417100 3415940 - RETRO2_LTR 12874 0.2704 (805/2977) 1 Solo_LTR Os_TE_648664 Os_TE_648664 Chr11 3415940 3417100 + RETRO2_LTR 12874 0.2671 (794/2973) 1 Solo_LTR Os_TE_648668 Os_TE_648658 Chr11 3414796 3414797 + MPING 430 0.0003 (1/2912) 0 * Os_TE_648657 Os_TE_648657 Chr11 3414794 3414793 - MPING 430 0.0003 (1/2920) 0 * Os_TE_648658 Os_TE_648656 Chr11 3414122 3414121 + ORSgTETNOOT00908 242 0.0003 (1/2992) 0 * * Os_TE_648625 Chr11 3398227 3412155 + RETROSAT4_LTR 13504 0.2541 (726/2857) 1 Intact * Os_TE_648608 Chr11 3389043 3389042 - NDNA1TNA_OS 334 0.0010 (3/2992) 0 * Os_TE_648607 Os_TE_648607 Chr11 3389042 3389043 - ORSgTEMT00100272 356 0.0010 (3/2993) 0 * Os_TE_648608 Os_TE_648606 Chr11 3388705 3388706 - COPI2_LTR 4733 0.0003 (1/2980) 0 * * Os_TE_648602 Chr11 3385173 3385172 + ORSgTEMT01602637 232 0.0010 (3/2956) 0 * * Os_TE_648579 Chr11 3372306 3372307 - TNR2A 152 0.0011 (3/2703) 0 * * Os_TE_648547 Chr11 3364226 3364227 - ORSgTEMT01400027 210 0.0023 (7/2990) 0 * * Os_TE_648525 Chr11 3357029 3357028 - ORSiTETNOOT00216 3569 0.0003 (1/2995) 0 * * Os_TE_648517 Chr11 3354702 3354703 - COPIA2-LTR_OS 6433 0.0003 (1/2980) 0 * Os_TE_648516 Os_TE_648516 Chr11 3354698 3354697 + COPIA2-LTR_OS 6433 0.0003 (1/2977) 0 * Os_TE_648517 Os_TE_648510 Chr11 3351982 3351983 + STOWAWAY9_OS 235 0.0024 (7/2911) 0 * * Os_TE_648503 Chr11 3348994 3348995 + OSTONOR1_LTR 6440 0.0003 (1/2946) 0 * Os_TE_648502 Os_TE_648502 Chr11 3348990 3348989 - OSTONOR1_LTR 6440 0.0003 (1/2952) 0 * Os_TE_648503 Os_TE_648494 Chr11 3347272 3347273 + SPMLIKE 10989 0.1069 (316/2956) 0 * * Os_TE_648493 Chr11 3346717 3346443 - SZ-25LTR 330 0.2816 (839/2979) 1 Intact Os_TE_648492 Os_TE_648492 Chr11 3346447 3346717 + COPI1_LTR 4721 0.2802 (834/2976) 1 Solo_LTR Os_TE_648493 Os_TE_648477 Chr11 3335431 3335432 + SC-8_LTR 4951 0.0003 (1/2978) 0 * Os_TE_648476 Os_TE_648476 Chr11 3335427 3335426 - SC-8_LTR 4951 0.0003 (1/2986) 0 * Os_TE_648477 Os_TE_648426 Chr11 3320725 3320726 - COPI2_LTR 4733 0.0037 (11/2940) 0 * Os_TE_648425 Os_TE_648425 Chr11 3320721 3320720 + COPI2_LTR 4733 0.0027 (8/2943) 0 * Os_TE_648426 Os_TE_648412 Chr11 3313364 3313365 + ORSgTETNOOT01668 244 0.5689 (1593/2800) 0 * * Os_TE_648409 Chr11 3313113 3313114 + ORSgTETNOOT01834 251 0.0612 (181/2958) 0 * Os_TE_648408 Os_TE_648408 Chr11 3313111 3313110 + ORSgTETNOOT01834 251 0.0620 (183/2951) 0.1 * Os_TE_648409 Os_TE_648404 Chr11 3310837 3310836 - COPIA2-LTR_OS 6433 0.0007 (2/2989) 0 * Os_TE_648403 Os_TE_648403 Chr11 3310836 3310837 + COPIA2-LTR_OS 6433 0.0007 (2/2993) 0 * Os_TE_648404 Os_TE_648402 Chr11 3310695 3310696 - COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_648401 Os_TE_648401 Chr11 3310691 3310690 + COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_648402 Os_TE_648373 Chr11 3298200 3298201 + ORSiOTOT00000037 220 0.0003 (1/2912) 0 * * Os_TE_648356 Chr11 3291880 3291879 - RETROSAT2LTR 12796 0.0003 (1/2988) 0 * * Os_TE_648330 Chr11 3282482 3282483 + HARB-1_OS 5166 0.0057 (17/2971) 0 * Os_TE_648329 Os_TE_648329 Chr11 3282480 3282479 - HARB-1_OS 5166 0.0060 (18/2976) 0 * Os_TE_648330 Os_TE_648321 Chr11 3281569 3281568 + DS-RICE4N 715 0.5835 (1744/2989) 0 * * Os_TE_648318 Chr11 3280275 3280274 - SZ-48LTR 3632 0.0193 (57/2949) 0 * * Os_TE_648317 Chr11 3280191 3280192 + RIREX_LTR 8828 0.0003 (1/2971) 0 * Os_TE_648316 Os_TE_648316 Chr11 3280187 3280186 - RIREX_LTR 8828 0.0003 (1/2966) 0 * Os_TE_648317 Os_TE_648302 Chr11 3268664 3268665 + COPIA2-LTR_OS 6433 0.0017 (5/2981) 0 * Os_TE_648301 Os_TE_648301 Chr11 3268660 3268659 - COPIA2-LTR_OS 6433 0.0017 (5/2980) 0 * Os_TE_648302 Os_TE_648266 Chr11 3256421 3256422 - MERMITE18B 1306 0.0007 (2/2812) 0 * * Os_TE_648227 Chr11 3241824 3241825 + AMYLTP 383 0.0003 (1/2985) 0 * Os_TE_648226 Os_TE_648226 Chr11 3241816 3241815 - AMYLTP 383 0.0003 (1/2983) 0 * Os_TE_648227 Os_TE_648225 Chr11 3241679 3241680 - ENSPM4_OS 11610 0.0206 (61/2966) 0 * * Os_TE_648220 Chr11 3239878 3239879 - OSTE20 496 0.0017 (5/2943) 0 * Os_TE_648219 Os_TE_648219 Chr11 3239874 3239873 - OSTE20 496 0.0014 (4/2919) 0 * Os_TE_648220 Os_TE_648190 Chr11 3231406 3231407 - NDNA1TNA_OS 334 0.0610 (179/2934) 0 * Os_TE_648189 Os_TE_648189 Chr11 3231404 3231403 + NDNA1TNA_OS 334 0.0642 (190/2958) 0 * Os_TE_648190 Os_TE_648184 Chr11 3230063 3222770 + SPMLIKE 10989 0.2758 (815/2955) 1 Intact * Os_TE_648164 Chr11 3221250 3221251 - COPIA2-LTR_OS 6433 0.0007 (2/2920) 0 * Os_TE_648163 Os_TE_648163 Chr11 3221246 3221245 + COPIA2-LTR_OS 6433 0.0007 (2/2918) 0 * Os_TE_648164 Os_TE_648155 Chr11 3218531 3218532 + RIRE2_LTR 11306 0.0209 (61/2922) 0 * Os_TE_648154 Os_TE_648154 Chr11 3218527 3218526 - RIRE2_LTR 11306 0.0206 (60/2918) 0 * Os_TE_648155 Os_TE_648150 Chr11 3217050 3217049 - NDNA2TNA_OS 346 0.0190 (55/2902) 0 * * Os_TE_648144 Chr11 3216067 3214825 + CACTA-M 1129 0.2705 (750/2773) 1 Intact * Os_TE_648141 Chr11 3212565 3212564 + ORSgTEMT01400031 216 0.0015 (4/2596) 0 * * Os_TE_648137 Chr11 3211390 3201262 - ORSgTETN00200001 10994 0.4248 (1232/2900) 1 Intact * Os_TE_648127 Chr11 3200793 3200792 + ORSgTEMT01600486 232 0.0008 (1/1276) 0 * * Os_TE_648085 Chr11 3175207 3175208 - COPIA2-LTR_OS 6433 0.0007 (2/2935) 0 * Os_TE_648084 Os_TE_648084 Chr11 3175203 3175202 + COPIA2-LTR_OS 6433 0.0007 (2/2936) 0 * Os_TE_648085 Os_TE_648083 Chr11 3173496 3162381 - ORSgTETN00200001 10994 0.0771 (138/1791) -1 Intact Os_TE_648078 Os_TE_648078 Chr11 3162378 3173496 + CACTA-B 1103 0.4556 (1278/2805) 1 Intact Os_TE_648083 Os_TE_648052 Chr11 3155618 3155471 + ORSgTEMT00501996 141 0.4451 (1325/2977) 1 Intact Os_TE_648049 Os_TE_648049 Chr11 3155476 3155616 - ORSgTEMT00502171 134 0.4459 (1326/2974) 1 Intact Os_TE_648052 Os_TE_648045 Chr11 3154467 3154466 - MERMITE18D 1491 0.5641 (1681/2980) 0 * * Os_TE_648022 Chr11 3146802 3148445 + MERMITEB 1610 0.6209 (1351/2176) 1 Intact * Os_TE_648020 Chr11 3145003 3145004 - RIREX_LTR 8828 0.0089 (12/1353) 0 * Os_TE_648019 Os_TE_648019 Chr11 3144999 3144998 + RIREX_LTR 8828 0.0103 (14/1353) 0 * Os_TE_648020 Os_TE_648000 Chr11 3135115 3135114 - SEVERIN-2 1952 0.0085 (11/1288) 0 * * Os_TE_647997 Chr11 3134798 3134799 - ORSgTEMT01601696 238 0.0031 (4/1270) 0 * * Os_TE_647985 Chr11 3128125 3128124 - ENSPM4_OS 11610 0.0064 (1/156) -1 * * Os_TE_647970 Chr11 3124127 3124128 - RIREX_LTR 8828 0.0007 (1/1357) 0 * Os_TE_647969 Os_TE_647969 Chr11 3124123 3124122 + RIREX_LTR 8828 0.0007 (1/1356) 0 * Os_TE_647970 Os_TE_647968 Chr11 3123257 3123258 - COWARD-3 221 0.0097 (13/1344) 0 * * Os_TE_647952 Chr11 3115472 3115473 - COWARD-3 221 0.0104 (14/1345) 0 * * Os_TE_647948 Chr11 3114055 3114056 + SZ-48LTR 3632 0.0172 (51/2966) 0 * * Os_TE_647946 Chr11 3113949 3113950 - ORSgTEMT00901041 237 0.0047 (14/2994) 0 * * Os_TE_647941 Chr11 3109855 3109854 + ORSgTEMT01602181 239 0.0003 (1/2983) 0 * Os_TE_647940 Os_TE_647940 Chr11 3109852 3109853 - ORSgTEMT01601432 239 0.0003 (1/2995) 0 * Os_TE_647941 Os_TE_647899 Chr11 3095586 3095585 - TYPEM 227 0.0037 (11/2993) 0 * Os_TE_647898 Os_TE_647898 Chr11 3095585 3095586 - ORSgTEMT02400246 177 0.0037 (11/2993) 0 * Os_TE_647899 Os_TE_647843 Chr11 3073959 3073958 - SZ-35LTR 3853 0.0005 (1/2222) 0 * * Os_TE_647835 Chr11 3064812 3064811 + STOWAWAY41_OS 264 0.0244 (73/2996) 0 * * Os_TE_647834 Chr11 3064601 3064310 - STOWAWAY11_OS 292 0.4583 (1370/2989) 1 Intact Os_TE_647833 Os_TE_647833 Chr11 3064310 3064601 + STOWAWAY11_OS 292 0.4577 (1365/2982) 1 Intact Os_TE_647834 Os_TE_647775 Chr11 3041691 3041692 - SZ-59_LTR 5600 0.1024 (306/2987) 0 * Os_TE_647774 Os_TE_647774 Chr11 3041687 3041686 + SZ-59_LTR 5600 0.1014 (303/2987) 0 * Os_TE_647775 Os_TE_647773 Chr11 3040672 3040673 - ORSgTEMT00500471 125 0.0244 (73/2987) 0 * Os_TE_647772 Os_TE_647772 Chr11 3040667 3040666 + ORSgTEMT00500209 122 0.0251 (75/2985) 0 * Os_TE_647773 Os_TE_647751 Chr11 3029273 3029274 + COWARD-3 221 0.3458 (1021/2953) 0 * Os_TE_647750 Os_TE_647750 Chr11 3029271 3029270 - COWARD 200 0.3490 (1035/2966) 0 * Os_TE_647751 Os_TE_647745 Chr11 3026077 3026076 - STOWAWAY13_OS 251 0.0005 (1/1847) -1 * * Os_TE_647736 Chr11 3022671 3022670 + ORSiTERTOOT00226 792 0.0007 (2/2984) 0 * * Os_TE_647734 Chr11 3019367 3019368 + RIREX_LTR 8828 0.0005 (1/1976) 0 * * Os_TE_647712 Chr11 2976098 2976099 + ORSgTEMT01701071 170 0.0024 (5/2099) 0 * * Os_TE_647708 Chr11 2975219 2975218 + TRUNCATOR 2918 0.0144 (30/2079) 0 * * Os_TE_647701 Chr11 2971058 2971059 - SZ-62LTR 3649 0.0227 (66/2910) 0 * Os_TE_647700 Os_TE_647700 Chr11 2971054 2971053 + SZ-62LTR 3649 0.0210 (61/2905) 0 * Os_TE_647701 Os_TE_647694 Chr11 2969481 2969340 + ORSgTEMT00501005 147 0.6953 (2054/2954) 1 Intact Os_TE_647691 Os_TE_647691 Chr11 2969339 2969479 - ORSgTETNOOT01113 138 0.7150 (2075/2902) 1 Intact Os_TE_647694 Os_TE_647689 Chr11 2969288 2969289 - ORSgTEMT00500111 145 0.3165 (932/2945) 0 * * Os_TE_647683 Chr11 2968262 2968263 - SZ-55_LTR 10318 0.0007 (2/2992) 0 * Os_TE_647682 Os_TE_647682 Chr11 2968258 2968257 + SZ-55_LTR 10318 0.0007 (2/2995) 0 * Os_TE_647683 Os_TE_647680 Chr11 2967840 2967839 + TNR2A 152 0.0013 (4/2984) 0 * * Os_TE_647679 Chr11 2967780 2967781 - TNR2A 152 0.0191 (57/2985) 0 * Os_TE_647678 Os_TE_647678 Chr11 2967764 2967763 + TNR2A 152 0.0174 (52/2987) 0 * Os_TE_647679 Os_TE_647673 Chr11 2965293 2965294 - COPIA2-LTR_OS 6433 0.0007 (2/2975) 0 * Os_TE_647672 Os_TE_647672 Chr11 2965289 2965288 + COPIA2-LTR_OS 6433 0.0007 (2/2976) 0 * Os_TE_647673 Os_TE_647660 Chr11 2961155 2961156 + TWIFB1 3737 0.0054 (16/2977) 0 * * Os_TE_647651 Chr11 2958908 2958907 - OSTE20 496 0.0013 (4/2978) 0 * * Os_TE_647650 Chr11 2958061 2958062 - SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_647649 Os_TE_647649 Chr11 2958057 2958056 + SC-8_LTR 4951 0.0003 (1/2994) 0 * Os_TE_647650 Os_TE_647644 Chr11 2950956 2950957 - SC-3_LTR 5748 0.0003 (1/2998) 0 * Os_TE_647643 Os_TE_647643 Chr11 2950952 2950951 + ORSiTERTOOT00296 5553 0.0003 (1/2997) 0 * Os_TE_647644 Os_TE_647642 Chr11 2950426 2950427 - SC-8_LTR 4951 0.0020 (6/2998) 0 * Os_TE_647641 Os_TE_647641 Chr11 2950422 2950421 + SC-8_LTR 4951 0.0020 (6/2999) 0 * Os_TE_647642 Os_TE_647617 Chr11 2936282 2936283 - ORSiTERT00100062 5674 0.0037 (11/2989) 0 * Os_TE_647616 Os_TE_647616 Chr11 2936278 2936277 + OSTONOR1_LTR 6440 0.0037 (11/2987) 0 * Os_TE_647617 Os_TE_647607 Chr11 2932459 2932460 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_647606 Os_TE_647606 Chr11 2932455 2932454 + COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_647607 Os_TE_647593 Chr11 2929828 2929827 + TRUNCATOR 2918 0.0003 (1/2944) 0 * * Os_TE_647572 Chr11 2918473 2918474 - ORSiTERTOOT00333 4719 0.0010 (3/2989) 0 * Os_TE_647571 Os_TE_647571 Chr11 2918470 2918469 + ORSiTERTOOT00333 4719 0.0010 (3/2989) 0 * Os_TE_647572 Os_TE_647560 Chr11 2905040 2905039 + ORSgTETNOOT00032 218 0.0995 (298/2996) 0 * * Os_TE_647543 Chr11 2898880 2898881 + RETRO2_LTR 12874 0.0217 (65/2996) 0 * * Os_TE_647539 Chr11 2897076 2898232 + ORSgTETN00200005 1121 0.6579 (1962/2982) 1 Intact * Os_TE_647532 Chr11 2892853 2892854 + INDITTO 263 0.1235 (369/2988) 0 * Os_TE_647531 Os_TE_647531 Chr11 2892851 2892850 - INDITTO 263 0.1561 (369/2364) 0 * Os_TE_647532 Os_TE_647520 Chr11 2889701 2889700 + HELITRON3_OS 12693 0.1223 (365/2984) 0 * Os_TE_647519 Os_TE_647519 Chr11 2889700 2889701 - HELITRON3_OS 12693 0.1228 (367/2988) 0 * Os_TE_647520 Os_TE_647473 Chr11 2881374 2881375 + SPMLIKE 10989 0.0010 (3/2983) 0 * Os_TE_647472 Os_TE_647472 Chr11 2881372 2881371 - ORSgTETN00200001 10994 0.0010 (3/2982) 0 * Os_TE_647473 Os_TE_647420 Chr11 2871574 2871575 + GYPSY-B_LTR 7068 0.0003 (1/2983) 0 * Os_TE_647419 Os_TE_647419 Chr11 2871570 2871569 - GYPSY-B_LTR 7068 0.0003 (1/2983) 0 * Os_TE_647420 Os_TE_647401 Chr11 2856893 2856894 + Cassandra_OS-LTR 764 0.1636 (489/2989) 0 * Os_TE_647400 Os_TE_647400 Chr11 2856889 2856888 - Cassandra_OS-LTR 764 0.1631 (487/2985) 0 * Os_TE_647401 Os_TE_647399 Chr11 2856517 2856518 - INDITTO 263 0.0023 (7/2995) 0 * Os_TE_647398 Os_TE_647398 Chr11 2856515 2856514 + INDITTO 263 0.0023 (7/2993) 0 * Os_TE_647399 Os_TE_647396 Chr11 2856423 2856422 + STOWAWAY51_OS 246 0.0017 (5/2996) 0 * Os_TE_647395 Os_TE_647395 Chr11 2856417 2856418 - STOWAWAY51_OS 246 0.0017 (5/2993) 0 * Os_TE_647396 Os_TE_647387 Chr11 2854553 2854554 + RIREX_LTR 8828 0.0010 (3/2993) 0 * Os_TE_647386 Os_TE_647386 Chr11 2854549 2854548 - RIREX_LTR 8828 0.0013 (4/2995) 0 * Os_TE_647387 Os_TE_647381 Chr11 2852150 2852149 - RETRO2_LTR 12874 0.1604 (476/2967) 0 * * Os_TE_647357 Chr11 2845894 2845895 + ORSgTEMT01601591 242 0.0003 (1/2988) 0 * * Os_TE_647343 Chr11 2835574 2835575 + ORSiTERTOOT00296 5553 0.0003 (1/2998) 0 * Os_TE_647342 Os_TE_647342 Chr11 2835570 2835569 - SC-3_LTR 5748 0.0003 (1/2998) 0 * Os_TE_647343 Os_TE_647323 Chr11 2823822 2823823 + STOWAWAY21_OS 243 0.0010 (3/2993) 0 * Os_TE_647322 Os_TE_647322 Chr11 2823821 2823820 + STOWAWAY21_OS 243 0.0003 (1/2988) 0 * Os_TE_647323 Os_TE_647254 Chr11 2794941 2794942 - RIREX_LTR 8828 0.0037 (11/2994) 0 * Os_TE_647253 Os_TE_647253 Chr11 2794937 2794936 + RIREX_LTR 8828 0.0033 (10/2994) 0 * Os_TE_647254 Os_TE_647240 Chr11 2785968 2785969 + ORSiTERTOOT00027 10853 0.0036 (10/2766) 0 * Os_TE_647239 Os_TE_647239 Chr11 2785964 2785963 - RIRE3A_LTR 10580 0.0033 (9/2747) 0 * Os_TE_647240 Os_TE_647228 Chr11 2767820 2778557 + CACTA-B 1103 0.7214 (2147/2976) 1 Intact * Os_TE_647226 Chr11 2767584 2767585 - ORSgTETNOOT00053 263 0.0003 (1/2987) 0 * Os_TE_647225 Os_TE_647225 Chr11 2767582 2767581 + ORSgTETNOOT00221 261 0.0003 (1/2986) 0 * Os_TE_647226 Os_TE_647223 Chr11 2766792 2766793 - MERMITE18B 1306 0.0003 (1/2954) 0 * Os_TE_647222 Os_TE_647222 Chr11 2766786 2766785 + MERMITEB 1610 0.0003 (1/2955) 0 * Os_TE_647223 Os_TE_647220 Chr11 2765173 2765174 - ORSgTEMT02000041 194 0.0190 (57/2994) 0 * * Os_TE_647218 Chr11 2759692 2759693 - DITTO 244 0.0004 (1/2855) 0 * * Os_TE_647197 Chr11 2753019 2753020 - STOWAWAY9_OS 235 0.0003 (1/2958) 0 * Os_TE_647196 Os_TE_647196 Chr11 2753018 2753017 + STOWAWAY9_OS 235 0.0003 (1/2963) 0 * Os_TE_647197 Os_TE_647195 Chr11 2752931 2752930 - STOWAWAY9_OS 235 0.0169 (50/2965) 0 * * Os_TE_647191 Chr11 2751249 2751248 - ORSgTEMT00502257 142 0.0003 (1/2986) 0 * * Os_TE_647188 Chr11 2750985 2750984 + AMYLTP 383 0.0214 (64/2985) 0 * * Os_TE_647174 Chr11 2742942 2742943 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_647173 Os_TE_647173 Chr11 2742938 2742937 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_647174 Os_TE_647172 Chr11 2742756 2742757 + ORSgTEMT00500020 148 0.0003 (1/2992) 0 * Os_TE_647171 Os_TE_647171 Chr11 2742752 2742751 - ORSgTEMT00500099 142 0.0003 (1/2992) 0 * Os_TE_647172 Os_TE_647164 Chr11 2736788 2736787 + DITAILA 257 0.0003 (1/2999) 0 * Os_TE_647163 Os_TE_647163 Chr11 2736787 2736788 - DITAIL 271 0.0003 (1/2999) 0 * Os_TE_647164 Os_TE_647157 Chr11 2730000 2729999 - NDNA1TNA_OS 334 0.0192 (57/2974) 0 * * Os_TE_647156 Chr11 2729933 2729934 + MuDR3_OS 8604 0.0198 (59/2978) 0 * Os_TE_647155 Os_TE_647155 Chr11 2729925 2729924 - MuDR3_OS 8604 0.0175 (52/2973) 0 * Os_TE_647156 Os_TE_647132 Chr11 2723363 2723364 - RIREX_LTR 8828 0.0197 (59/2994) 0 * Os_TE_647131 Os_TE_647131 Chr11 2723359 2723358 + RIREX_LTR 8828 0.0194 (58/2995) 0 * Os_TE_647132 Os_TE_647130 Chr11 2723293 2723294 - TRUNCATOR2_LTR 2904 0.2487 (744/2991) 0 * Os_TE_647129 Os_TE_647129 Chr11 2723289 2723288 + TRUNCATOR2_LTR 2904 0.2478 (740/2986) 0 * Os_TE_647130 Os_TE_647102 Chr11 2707927 2707926 + STOWAWAY51_OS 246 0.0010 (3/2972) 0 * Os_TE_647101 Os_TE_647101 Chr11 2707921 2707922 - STOWAWAY51_OS 246 0.0010 (3/2965) 0 * Os_TE_647102 Os_TE_647100 Chr11 2707666 2707667 - COPIA2-LTR_OS 6433 0.0003 (1/2978) 0 * * Os_TE_647085 Chr11 2704015 2704016 + ORSgTETNOOT01668 244 0.0197 (58/2947) 0 * * Os_TE_647070 Chr11 2696563 2696564 - ORSgTERT00201385 8846 0.0017 (5/2913) 0 * * Os_TE_647062 Chr11 2692048 2692049 - ORSiTERTOOT00361 5627 0.0003 (1/2979) 0 * Os_TE_647061 Os_TE_647061 Chr11 2692044 2692043 + ORSiTERTOOT00361 5627 0.0003 (1/2983) 0 * Os_TE_647062 Os_TE_647045 Chr11 2686350 2686351 + ORSgTEMT00500498 155 0.3889 (1165/2996) 0 * * Os_TE_647040 Chr11 2683604 2683605 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_647039 Os_TE_647039 Chr11 2683600 2683599 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_647040 Os_TE_647032 Chr11 2681450 2681451 + COPIA2-LTR_OS 6433 0.0003 (1/2955) 0 * * Os_TE_647027 Chr11 2679564 2679565 - COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_647026 Os_TE_647026 Chr11 2679560 2679559 + COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * Os_TE_647027 Os_TE_647002 Chr11 2673175 2673174 + NDNA1TNA_OS 334 0.0007 (2/2983) 0 * * Os_TE_646983 Chr11 2664516 2664515 + RPO_OS 1983 0.0199 (58/2921) 0 * * Os_TE_646980 Chr11 2663198 2663199 + OLO24 345 0.0590 (177/2999) 0 * Os_TE_646979 Os_TE_646979 Chr11 2663196 2663195 - OLO24 345 0.0587 (176/2997) 0 * Os_TE_646980 Os_TE_646957 Chr11 2658140 2658141 - SZ-35LTR 3853 0.0010 (3/2945) 0 * Os_TE_646956 Os_TE_646956 Chr11 2658136 2658135 + RETROSAT4_LTR 13504 0.0010 (3/2954) 0 * Os_TE_646957 Os_TE_646951 Chr11 2657117 2657118 + MPING 430 0.0003 (1/2981) 0 * Os_TE_646950 Os_TE_646950 Chr11 2657115 2657114 - MPING 430 0.0003 (1/2961) 0 * Os_TE_646951 Os_TE_646931 Chr11 2652151 2652150 - RETRO1_LTR 8314 0.0593 (176/2970) 0 * * Os_TE_646884 Chr11 2640554 2640555 - MUDRN1_OS 764 0.0604 (180/2978) 0 * Os_TE_646883 Os_TE_646883 Chr11 2640546 2640545 + MUDRN2_OS 756 0.0552 (164/2969) 0 * Os_TE_646884 Os_TE_646863 Chr11 2638819 2638820 - OSTONOR1_LTR 6440 0.0003 (1/2991) 0 * Os_TE_646862 Os_TE_646862 Chr11 2638815 2638814 + OSTONOR1_LTR 6440 0.0003 (1/2991) 0 * Os_TE_646863 Os_TE_646857 Chr11 2637834 2637835 - ORSgTETNOOT01243 137 0.0003 (1/2998) 0 * Os_TE_646856 Os_TE_646856 Chr11 2637832 2637831 - ORSgTETNOOT00118 134 0.0003 (1/2997) 0 * Os_TE_646857 Os_TE_646851 Chr11 2634023 2634024 - SC-3_LTR 5748 0.0279 (83/2980) 0 * Os_TE_646850 Os_TE_646850 Chr11 2634019 2634018 + ORSiTERTOOT00296 5553 0.0274 (82/2990) 0 * Os_TE_646851 Os_TE_646846 Chr11 2629352 2629017 + ORSgTEMT00100531 325 0.5124 (1525/2976) 1 Intact Os_TE_646845 Os_TE_646845 Chr11 2629016 2629350 + NDNA1TNA_OS 334 0.5172 (1545/2987) 1 Intact Os_TE_646846 Os_TE_646844 Chr11 2628198 2628199 + OSCOPIA2_LTR 5476 0.0010 (3/2996) 0 * Os_TE_646843 Os_TE_646843 Chr11 2628194 2628193 - OSCOPIA2_LTR 5476 0.0010 (3/2997) 0 * Os_TE_646844 Os_TE_646842 Chr11 2628164 2628165 - CLOUD 734 0.0254 (76/2994) 0 * Os_TE_646841 Os_TE_646841 Chr11 2628161 2628160 - CLOUD 734 0.0254 (76/2995) 0 * Os_TE_646842 Os_TE_646837 Chr11 2626655 2626654 + ORSgTEMT00500201 140 0.0847 (241/2844) 0 * Os_TE_646836 Os_TE_646836 Chr11 2626654 2626655 - ORSgTETNOOT00118 134 0.0793 (225/2839) 0 * Os_TE_646837 Os_TE_646819 Chr11 2617120 2617119 + RIREX_LTR 8828 0.0119 (31/2616) 0 * * Os_TE_646799 Chr11 2607104 2607105 + ORSiTERTOOT00296 5553 0.0003 (1/2991) 0 * Os_TE_646798 Os_TE_646798 Chr11 2607100 2607099 - SC-3_LTR 5748 0.0003 (1/2993) 0 * Os_TE_646799 Os_TE_646797 Chr11 2606675 2606676 + ORSgTEMT05000092 279 0.1312 (383/2919) 0 * Os_TE_646796 Os_TE_646796 Chr11 2606673 2606672 - SUSU 279 0.1341 (398/2969) 0 * Os_TE_646797 Os_TE_646790 Chr11 2604534 2604535 - NDNA1TNA_OS 334 0.0581 (174/2994) 0 * Os_TE_646789 Os_TE_646789 Chr11 2604532 2604531 + NDNA1TNA_OS 334 0.0588 (176/2994) 0 * Os_TE_646790 Os_TE_646788 Chr11 2602987 2602986 - ORSgTEMT01601208 238 0.0017 (5/2982) 0 * Os_TE_646787 Os_TE_646787 Chr11 2602984 2602985 - ORSgTEMT01600639 228 0.0017 (5/2982) 0 * Os_TE_646788 Os_TE_646783 Chr11 2601656 2601655 + ORSgTEMT01602083 237 0.0024 (7/2966) 0 * * Os_TE_646782 Chr11 2601537 2601538 + COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * Os_TE_646781 Os_TE_646781 Chr11 2601533 2601532 - COPIA2-LTR_OS 6433 0.0007 (2/2988) 0 * Os_TE_646782 Os_TE_646780 Chr11 2601012 2601013 + COPIA2-LTR_OS 6433 0.0003 (1/2980) 0 * Os_TE_646779 Os_TE_646779 Chr11 2601008 2601007 - COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * Os_TE_646780 Os_TE_646737 Chr11 2591004 2591005 - ORSgTEMT01600152 226 0.0004 (1/2777) 0 * * Os_TE_646735 Chr11 2590921 2590920 + OLO24 345 0.0044 (12/2718) 0 * * Os_TE_646721 Chr11 2588461 2587328 + MDM2 312 0.4616 (1378/2985) 1 Intact Os_TE_646720 Os_TE_646720 Chr11 2587328 2588461 + MDM2 312 0.4607 (1373/2980) 1 Intact Os_TE_646721 Os_TE_646710 Chr11 2586134 2586133 + JOUZHEN 596 0.1789 (481/2688) 0 * * Os_TE_646706 Chr11 2584900 2584899 - ORSgTEMT00901654 233 0.0040 (12/2989) 0 * * Os_TE_646705 Chr11 2584779 2584780 - ORSgTEMT00901327 242 0.0040 (12/2990) 0 * * Os_TE_646703 Chr11 2584508 2584509 - RIRE2_LTR 11306 0.0631 (189/2995) 0 * Os_TE_646702 Os_TE_646702 Chr11 2584504 2584503 + RIREX_LTR 8828 0.0638 (191/2995) 0 * Os_TE_646703 Os_TE_646698 Chr11 2582694 2582695 + NDNA1TNA_OS 334 0.0061 (10/1630) 0 * Os_TE_646697 Os_TE_646697 Chr11 2582692 2582691 - NDNA1TNA_OS 334 0.0062 (10/1623) 0 * Os_TE_646698 Os_TE_646692 Chr11 2582077 2582076 + ORSgTEMT01601591 242 0.0030 (9/2993) 0 * Os_TE_646691 Os_TE_646691 Chr11 2582074 2582075 - STOWAWAY51_OS 246 0.0037 (11/2988) 0 * Os_TE_646692 Os_TE_646690 Chr11 2581723 2581724 + COPI2_LTR 4733 0.0017 (5/2996) 0 * Os_TE_646689 Os_TE_646689 Chr11 2581719 2581718 - COPI2_LTR 4733 0.0017 (5/2993) 0 * Os_TE_646690 Os_TE_646678 Chr11 2580927 2580928 - OLO24 345 0.0003 (1/2979) 0 * Os_TE_646677 Os_TE_646677 Chr11 2580925 2580924 + OLO24 345 0.0003 (1/2975) 0 * Os_TE_646678 Os_TE_646669 Chr11 2579886 2579887 + COPI2_LTR 4733 0.0007 (2/2990) 0 * Os_TE_646668 Os_TE_646668 Chr11 2579882 2579881 - COPI2_LTR 4733 0.0007 (2/2989) 0 * Os_TE_646669 Os_TE_646651 Chr11 2573840 2573839 + ORSgTEMT01601591 242 0.0007 (2/2988) 0 * * Os_TE_646645 Chr11 2571631 2571632 - COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_646644 Os_TE_646644 Chr11 2571627 2571626 + COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_646645 Os_TE_646641 Chr11 2566400 2566399 - RCH2 1201 0.0003 (1/2989) 0 * * Os_TE_646637 Chr11 2561819 2561818 - TEMPINDAS 4259 0.0194 (56/2880) 0 * * Os_TE_646633 Chr11 2560292 2560293 + HARB-1_OS 5166 0.0003 (1/2945) 0 * Os_TE_646632 Os_TE_646632 Chr11 2560290 2560289 - HARB-1_OS 5166 0.0007 (2/2958) 0 * Os_TE_646633 Os_TE_646622 Chr11 2558775 2558774 + TRUNCATOR 2918 0.0020 (6/2940) 0 * Os_TE_646621 Os_TE_646621 Chr11 2558774 2558775 - TRUNCATOR 2918 0.0020 (6/2937) 0 * Os_TE_646622 Os_TE_646620 Chr11 2558674 2558673 + ORSgTEMT01601122 212 0.0761 (221/2905) 0 * Os_TE_646619 Os_TE_646619 Chr11 2558671 2558672 + ORSgTEMT01601122 212 0.0898 (265/2952) 0 * Os_TE_646620 Os_TE_646617 Chr11 2558484 2558483 - TYPEH 309 0.0003 (1/2963) 0 * * Os_TE_646598 Chr11 2551813 2551814 + INDITTO 263 0.0532 (159/2990) 0 * Os_TE_646597 Os_TE_646597 Chr11 2551811 2551810 - INDITTO 263 0.0530 (158/2980) 0 * Os_TE_646598 Os_TE_646595 Chr11 2551013 2551012 - COPIA2-LTR_OS 6433 0.0003 (1/2976) 0 * * Os_TE_646576 Chr11 2548244 2548245 - INDITTO 263 0.0007 (2/2921) 0 * Os_TE_646575 Os_TE_646575 Chr11 2548242 2548241 + INDITTO 263 0.0007 (2/2922) 0 * Os_TE_646576 Os_TE_646573 Chr11 2547864 2547863 + RETRO2A_LTR 12895 0.1082 (320/2957) 0 * * Os_TE_646558 Chr11 2545494 2545493 - ORSgTEMT01600559 234 0.1266 (255/2015) 0 * * Os_TE_646549 Chr11 2543462 2543461 + ORSgTEMT00500610 153 0.0017 (5/2993) 0 * Os_TE_646548 Os_TE_646548 Chr11 2543453 2543454 - ORSgTEMT00502287 149 0.0017 (5/2995) 0 * Os_TE_646549 Os_TE_646538 Chr11 2537400 2537401 - TEMPINDAS 4259 0.0281 (84/2988) 0 * * Os_TE_646533 Chr11 2536733 2536732 - MPING 430 0.0004 (1/2673) 0 * * Os_TE_646518 Chr11 2529280 2529281 - HARB-1_OS 5166 0.0004 (1/2607) 0 * Os_TE_646517 Os_TE_646517 Chr11 2529278 2529277 + HARB-1_OS 5166 0.0003 (1/2987) 0 * Os_TE_646518 Os_TE_646495 Chr11 2515088 2515089 - SZ-22_LTR 4403 0.0003 (1/2983) 0 * Os_TE_646494 Os_TE_646494 Chr11 2515084 2515083 + ORSiTERTOOT00034 791 0.0003 (1/2984) 0 * Os_TE_646495 Os_TE_646493 Chr11 2514918 2514919 + SC-8_LTR 4951 0.0003 (1/2994) 0 * Os_TE_646492 Os_TE_646492 Chr11 2514914 2514913 - SC-8_LTR 4951 0.0003 (1/2999) 0 * Os_TE_646493 Os_TE_646484 Chr11 2512927 2513299 - MDM1 326 0.8783 (2598/2958) 1 Intact * Os_TE_646469 Chr11 2508972 2508973 - RIREX_LTR 8828 0.0003 (1/2959) 0 * Os_TE_646468 Os_TE_646468 Chr11 2508968 2508967 + RIREX_LTR 8828 0.0003 (1/2901) 0 * Os_TE_646469 Os_TE_646455 Chr11 2500154 2500155 + NDNA1TNA_OS 334 0.0044 (13/2987) 0 * * Os_TE_646447 Chr11 2499427 2499141 - ORSgTEMT01400023 211 0.8776 (2165/2467) 1 Intact * Os_TE_646441 Chr11 2497990 2497883 + OSTE18 129 0.8734 (2614/2993) 1 Intact * Os_TE_646436 Chr11 2497474 2497333 + ORSiTEMT03300001 145 0.8755 (2616/2988) 1 Intact * Os_TE_646435 Chr11 2497342 2497343 + ORSgTEMT00101542 317 0.0004 (1/2650) 0 * * Os_TE_646433 Chr11 2497319 2497473 - ORSiTEMT03300001 145 0.8769 (2621/2989) 1 Intact * Os_TE_646425 Chr11 2494525 2494526 - COPIA2-LTR_OS 6433 0.0004 (1/2293) 0 * Os_TE_646424 Os_TE_646424 Chr11 2494521 2494520 + COPIA2-LTR_OS 6433 0.0004 (1/2267) 0 * Os_TE_646425 Os_TE_646423 Chr11 2494101 2494100 - ORSgTEMT00900034 246 0.0192 (56/2912) 0 * Os_TE_646422 Os_TE_646422 Chr11 2494099 2494100 - ORSgTEMT00901071 248 0.0235 (70/2973) 0 * Os_TE_646423 Os_TE_646398 Chr11 2486925 2486924 - SZ-22_LTR 4403 0.0003 (1/2989) 0 * * Os_TE_646395 Chr11 2486154 2486155 + COPI2_LTR 4733 0.0193 (57/2961) 0 * Os_TE_646394 Os_TE_646394 Chr11 2486150 2486149 - COPI2_LTR 4733 0.0228 (68/2978) 0 * Os_TE_646395 Os_TE_646351 Chr11 2475408 2475409 - RIREX_LTR 8828 0.0003 (1/2963) 0 * Os_TE_646350 Os_TE_646350 Chr11 2475404 2475403 + RIREX_LTR 8828 0.0003 (1/2969) 0 * Os_TE_646351 Os_TE_646325 Chr11 2467389 2467390 + OSTE18 129 0.0017 (5/2999) 0 * * Os_TE_646315 Chr11 2460956 2460957 - TYPEH 309 0.0003 (1/2992) 0 * * Os_TE_646299 Chr11 2454955 2454956 - SC-8_LTR 4951 0.0007 (2/2963) 0 * Os_TE_646298 Os_TE_646298 Chr11 2454951 2454950 + SC-8_LTR 4951 0.0007 (2/2963) 0 * Os_TE_646299 Os_TE_646280 Chr11 2444916 2444917 - DS-RICE2N 613 0.3942 (1164/2953) 0 * Os_TE_646279 Os_TE_646279 Chr11 2444909 2444908 + DS-RICE2N 613 0.3960 (1167/2947) 0 * Os_TE_646280 Os_TE_646277 Chr11 2444222 2444223 + COPIA2-LTR_OS 6433 0.0010 (3/2986) 0 * Os_TE_646276 Os_TE_646276 Chr11 2444218 2444217 - COPIA2-LTR_OS 6433 0.0010 (3/2988) 0 * Os_TE_646277 Os_TE_646268 Chr11 2442237 2442238 - MPING 430 0.0003 (1/2996) 0 * * Os_TE_646266 Chr11 2442148 2442149 + HARB-1_OS 5166 0.0030 (9/2993) 0 * Os_TE_646265 Os_TE_646265 Chr11 2442146 2442145 - HARB-1_OS 5166 0.0030 (9/2995) 0 * Os_TE_646266 Os_TE_646264 Chr11 2442030 2442031 + INDITTO 263 0.0003 (1/2986) 0 * Os_TE_646263 Os_TE_646263 Chr11 2442028 2442027 - INDITTO 263 0.0003 (1/2992) 0 * Os_TE_646264 Os_TE_646262 Chr11 2441921 2441922 - ORSgTETNOOT00477 252 0.0202 (60/2973) 0 * Os_TE_646261 Os_TE_646261 Chr11 2441916 2441915 - ORSgTETNOOT00754 253 0.0208 (62/2986) 0 * Os_TE_646262 Os_TE_646247 Chr11 2440778 2440779 - INDITTO 263 0.0003 (1/2965) 0 * * Os_TE_646220 Chr11 2429281 2429280 - TELIA 141 0.0007 (2/2925) 0 * * Os_TE_646208 Chr11 2419896 2419895 - SC-8_LTR 4951 0.0007 (2/2987) 0 * * Os_TE_646203 Chr11 2416598 2416599 + ORSiTERTOOT00296 5553 0.0224 (67/2993) 0 * Os_TE_646202 Os_TE_646202 Chr11 2416594 2416593 - SC-3_LTR 5748 0.0234 (70/2996) 0 * Os_TE_646203 Os_TE_646200 Chr11 2415957 2415958 + ORSiTERTOOT00296 5553 0.0020 (6/2989) 0 * Os_TE_646199 Os_TE_646199 Chr11 2415953 2415952 - SC-3_LTR 5748 0.0020 (6/2992) 0 * Os_TE_646200 Os_TE_646182 Chr11 2410575 2410574 - MuDR4_OS 7610 0.0020 (6/2948) 0 * * Os_TE_646169 Chr11 2408740 2408739 + TRUNCATOR 2918 0.0022 (6/2778) 0 * Os_TE_646168 Os_TE_646168 Chr11 2408739 2408740 - TRUNCATOR 2918 0.0022 (6/2783) 0 * Os_TE_646169 Os_TE_646167 Chr11 2407471 2407472 - AMYLTP 383 0.0014 (4/2902) 0 * Os_TE_646166 Os_TE_646166 Chr11 2407463 2407462 + AMYLTP 383 0.0017 (5/2909) 0 * Os_TE_646167 Os_TE_646159 Chr11 2405584 2405583 + CACTA-B 1103 0.0021 (6/2872) 0 * * Os_TE_646152 Chr11 2404783 2404784 + INDITTO 263 0.0024 (6/2486) 0 * * Os_TE_646142 Chr11 2399908 2399907 - TNR2A 152 0.0003 (1/2968) 0 * * Os_TE_646137 Chr11 2398208 2398209 + CACTA-B 1103 0.0018 (5/2857) 0 * * Os_TE_646136 Chr11 2397008 2397009 + COPIA2-LTR_OS 6433 0.0027 (4/1495) 0 * Os_TE_646135 Os_TE_646135 Chr11 2397004 2397003 - COPIA2-LTR_OS 6433 0.0059 (11/1866) 0 * Os_TE_646136 Os_TE_646106 Chr11 2388160 2388161 - MPING 430 0.0003 (1/2986) 0 * Os_TE_646105 Os_TE_646105 Chr11 2388158 2388157 + MPING 430 0.0003 (1/2983) 0 * Os_TE_646106 Os_TE_646103 Chr11 2387439 2387438 + ORSgTETNOOT00032 218 0.0007 (2/2969) 0 * * Os_TE_646078 Chr11 2378302 2378301 - ORSgTEMT01600520 239 0.0033 (10/2994) 0 * Os_TE_646077 Os_TE_646077 Chr11 2378299 2378300 - ORSgTEMT01602082 215 0.0033 (10/2995) 0 * Os_TE_646078 Os_TE_646069 Chr11 2376474 2376473 - COPIA2-LTR_OS 6433 0.0107 (32/2991) 0 * * Os_TE_646062 Chr11 2372964 2372965 + ORSgTEMT01601367 239 0.0028 (8/2822) 0 * * Os_TE_646053 Chr11 2367336 2367335 + ORSgTERT00200981 4035 0.0010 (1/992) 0 * * Os_TE_646052 Chr11 2366750 2366749 + ORSiTERTOOT00381 4988 0.0004 (1/2312) 0 * * Os_TE_646050 Chr11 2362717 2362718 + COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_646049 Os_TE_646049 Chr11 2362713 2362712 - COPIA2-LTR_OS 6433 0.0004 (1/2502) 0 * Os_TE_646050 Os_TE_646041 Chr11 2361635 2361890 + STOWAWAY8_OS 259 0.3424 (947/2766) 1 Intact * Os_TE_646040 Chr11 2361064 2361065 + F569 228 0.0034 (10/2933) 0 * Os_TE_646039 Os_TE_646039 Chr11 2361062 2361061 - F569 228 0.0031 (9/2912) 0 * Os_TE_646040 Os_TE_646030 Chr11 2358164 2358165 + ORSgTETNOOT00908 242 0.0003 (1/2983) 0 * * Os_TE_646029 Chr11 2357543 2357544 - INDITTO 263 0.0003 (1/2992) 0 * Os_TE_646028 Os_TE_646028 Chr11 2357541 2357540 + INDITTO 263 0.0003 (1/2990) 0 * Os_TE_646029 Os_TE_646002 Chr11 2350026 2350027 - RETRO2A_LTR 12895 0.0031 (9/2914) 0 * Os_TE_646001 Os_TE_646001 Chr11 2350022 2350021 + RETRO2A_LTR 12895 0.0035 (10/2872) 0 * Os_TE_646002 Os_TE_645999 Chr11 2349257 2349258 + GYPSY-A_LTR 8951 0.0031 (9/2938) 0 * Os_TE_645998 Os_TE_645998 Chr11 2349253 2349252 - SZ-40LTR 2465 0.0027 (8/2927) 0 * Os_TE_645999 Os_TE_645994 Chr11 2348375 2348376 + ORSgTEMT02400245 225 0.0035 (9/2608) 0 * * Os_TE_645992 Chr11 2345758 2345759 + RETROSAT3_LTR 11537 0.0003 (1/2996) 0 * Os_TE_645991 Os_TE_645991 Chr11 2345754 2345753 - RETROSAT3_LTR 11537 0.0003 (1/2993) 0 * Os_TE_645992 Os_TE_645989 Chr11 2341658 2341659 - COPI2_LTR 4733 0.0007 (2/2997) 0 * Os_TE_645988 Os_TE_645988 Chr11 2341654 2341653 + COPI2_LTR 4733 0.0007 (2/2998) 0 * Os_TE_645989 Os_TE_645981 Chr11 2338665 2338666 - ORSgTEMT00501447 126 0.0003 (1/2903) 0 * * Os_TE_645969 Chr11 2336948 2336949 + ORSiTERTOOT00296 5553 0.0003 (1/2991) 0 * Os_TE_645968 Os_TE_645968 Chr11 2336944 2336943 - SC-3_LTR 5748 0.0003 (1/2989) 0 * Os_TE_645969 Os_TE_645967 Chr11 2333783 2333782 - SC-3_LTR 5748 0.0017 (5/2997) 0 * * Os_TE_645965 Chr11 2333249 2333250 - SZ-22_LTR 4403 0.0003 (1/2998) 0 * Os_TE_645964 Os_TE_645964 Chr11 2333245 2333244 + ORSiTERTOOT00226 792 0.0003 (1/2998) 0 * Os_TE_645965 Os_TE_645939 Chr11 2318448 2309873 - MuDR3_OS 8604 0.3759 (1086/2889) 1 Intact Os_TE_645933 Os_TE_645933 Chr11 2309870 2318442 - MuDR3_OS 8604 0.2970 (768/2586) -1 Intact Os_TE_645939 Os_TE_645920 Chr11 2306901 2306902 + GYPSY-A_LTR 8951 0.0017 (5/2979) 0 * Os_TE_645919 Os_TE_645919 Chr11 2306897 2306896 - SZ-40LTR 2465 0.0017 (5/2994) 0 * Os_TE_645920 Os_TE_645786 Chr11 2279343 2279344 + ORSiTERTOOT00296 5553 0.0003 (1/2991) 0 * Os_TE_645785 Os_TE_645785 Chr11 2279339 2279338 - SC-3_LTR 5748 0.0003 (1/2994) 0 * Os_TE_645786 Os_TE_645784 Chr11 2275769 2275770 - ORSgTEMT00400012 148 0.0003 (1/2925) 0 * * Os_TE_645783 Chr11 2274859 2274858 + DS-RICE4N 715 0.0138 (41/2979) 0 * * Os_TE_645770 Chr11 2268556 2268557 + MPING 430 0.0003 (1/2989) 0 * Os_TE_645769 Os_TE_645769 Chr11 2268554 2268553 - MPING 430 0.0003 (1/2993) 0 * Os_TE_645770 Os_TE_645765 Chr11 2264329 2264328 - ORSgTERT00201216 11284 0.0010 (2/2044) 0 * * Os_TE_645759 Chr11 2263223 2263224 - RETROSAT2LTR 12796 0.0027 (8/2996) 0 * * Os_TE_645745 Chr11 2244428 2244429 + ORSgTEMT00700017 386 0.0003 (1/2956) 0 * * Os_TE_645736 Chr11 2238952 2238951 + STOWAWAY51_OS 246 0.2808 (833/2967) 0 * * Os_TE_645726 Chr11 2229933 2229934 - ORSiTETNOOT00134 607 0.0003 (1/2948) 0 * Os_TE_645725 Os_TE_645725 Chr11 2229926 2229925 + TWIF 586 0.0003 (1/2940) 0 * Os_TE_645726 Os_TE_645716 Chr11 2228795 2228794 + INDITTO 263 0.3793 (1135/2992) 0 * * Os_TE_645706 Chr11 2222957 2222958 - SZ-67LTR 1540 0.0017 (5/2974) 0 * Os_TE_645705 Os_TE_645705 Chr11 2222953 2222952 + SZ-67LTR 1540 0.0017 (5/2972) 0 * Os_TE_645706 Os_TE_645693 Chr11 2219837 2219836 - STOWAWAY51_OS 246 0.0003 (1/2997) 0 * Os_TE_645692 Os_TE_645692 Chr11 2219834 2219835 - STOWAWAY51_OS 246 0.0003 (1/2992) 0 * Os_TE_645693 Os_TE_645685 Chr11 2215241 2215242 + RIREX_LTR 8828 0.0023 (7/2986) 0 * Os_TE_645684 Os_TE_645684 Chr11 2215237 2215236 - RIREX_LTR 8828 0.0023 (7/2990) 0 * Os_TE_645685 Os_TE_645666 Chr11 2200526 2204171 - ORSiTETNOOT00200 3563 0.3256 (971/2982) 1 Intact * Os_TE_645632 Chr11 2194591 2193983 - JOUZHENA 607 0.3072 (883/2874) 1 Intact Os_TE_645630 Os_TE_645630 Chr11 2193983 2194591 + JOUZHENA 607 0.3307 (979/2960) 1 Intact Os_TE_645632 Os_TE_645616 Chr11 2192666 2192667 - INDITTO 263 0.0037 (11/2989) 0 * Os_TE_645615 Os_TE_645615 Chr11 2192664 2192663 + INDITTO 263 0.0037 (11/2990) 0 * Os_TE_645616 Os_TE_645603 Chr11 2191196 2191197 - BUHUI 375 0.6664 (1950/2926) 0 * * Os_TE_645601 Chr11 2191071 2191070 - ORSgTEMT01601768 238 0.0004 (1/2815) 0 * * Os_TE_645572 Chr11 2185536 2185537 - ORSgTEMT01400014 209 0.0017 (5/2932) 0 * * Os_TE_645541 Chr11 2177121 2177122 + ORSiTERTOOT00226 792 0.0003 (1/2999) 0 * * Os_TE_645539 Chr11 2175330 2175331 - RETROSAT2LTR 12796 0.0030 (9/2986) 0 * * Os_TE_645522 Chr11 2172248 2172249 + MPING 430 0.0003 (1/2994) 0 * * Os_TE_645509 Chr11 2165421 2165420 + SETARIA2 1142 0.0004 (1/2339) 0 * * Os_TE_645499 Chr11 2163761 2163762 + RETROSAT2LTR 12796 0.0010 (3/2980) 0 * * Os_TE_645489 Chr11 2162100 2162101 + ORSgTETN00200005 1121 0.0007 (2/2975) 0 * * Os_TE_645467 Chr11 2157970 2157969 - SC-3_LTR 5748 0.0060 (18/2992) 0 * * Os_TE_645442 Chr11 2143349 2143350 - COPI2_LTR 4733 0.0003 (1/2994) 0 * * Os_TE_645434 Chr11 2141893 2141894 + GYPSY-A_LTR 8951 0.0025 (7/2816) 0 * * Os_TE_645417 Chr11 2131605 2131604 + INDITTO 263 0.0067 (20/2990) 0 * * Os_TE_645386 Chr11 2110057 2110058 + RIREX_LTR 8828 0.0003 (1/2987) 0 * Os_TE_645385 Os_TE_645385 Chr11 2110053 2110052 - RIREX_LTR 8828 0.0003 (1/2987) 0 * Os_TE_645386 Os_TE_645376 Chr11 2103100 2103099 - RETROSAT5_LTR 13878 0.3028 (440/1453) 0 * * Os_TE_645374 Chr11 2102827 2102826 - RETROSAT2LTR 12796 0.0321 (46/1435) 0 * * Os_TE_645339 Chr11 2091585 2091586 - TOS17LTR 138 0.0034 (5/1473) 0 * Os_TE_645338 Os_TE_645338 Chr11 2091581 2091580 + TOS17LTR 138 0.0034 (5/1475) 0 * Os_TE_645339 Os_TE_645316 Chr11 2074528 2074529 - TWIFB1 3737 0.0017 (5/2976) 0 * Os_TE_645315 Os_TE_645315 Chr11 2074520 2074519 + TWIFB1 3737 0.0034 (10/2984) 0 * Os_TE_645316 Os_TE_645314 Chr11 2074507 2074508 + TWIF 586 0.0010 (3/2960) 0 * Os_TE_645313 Os_TE_645313 Chr11 2074500 2074499 - ORSiTETNOOT00134 607 0.0014 (4/2959) 0 * Os_TE_645314 Os_TE_645290 Chr11 2070170 2070171 + TWIF 586 0.0020 (6/2947) 0 * Os_TE_645289 Os_TE_645289 Chr11 2070163 2070162 - ORSiTETNOOT00134 607 0.0020 (6/2947) 0 * Os_TE_645290 Os_TE_645283 Chr11 2067411 2067412 - RETROSAT4_LTR 13504 0.0748 (223/2982) 0 * Os_TE_645282 Os_TE_645282 Chr11 2067407 2067406 + RETROSAT4_LTR 13504 0.0702 (209/2976) 0 * Os_TE_645283 Os_TE_645263 Chr11 2050607 2050606 + COPI2_LTR 4733 0.0003 (1/2954) 0 * * Os_TE_645259 Chr11 2048539 2048540 + RETROSAT4_LTR 13504 0.0023 (7/2993) 0 * Os_TE_645258 Os_TE_645258 Chr11 2048535 2048534 - SZ-35LTR 3853 0.0023 (7/2991) 0 * Os_TE_645259 Os_TE_645173 Chr11 1971329 1971330 + SC9A_LTR 5300 0.0020 (6/2981) 0 * * Os_TE_645127 Chr11 1956507 1956506 + ORSiTERTOOT00291 11421 0.0009 (2/2317) 0 * * Os_TE_645110 Chr11 1946926 1946927 + ORSiTERT00200145 12238 0.0059 (17/2903) 0 * * Os_TE_645105 Chr11 1945770 1945769 - RIRE2_LTR 11306 0.0003 (1/2992) 0 * * Os_TE_645082 Chr11 1932187 1932186 - LINE-7_OS 7090 0.0017 (5/2992) 0 * * Os_TE_645061 Chr11 1928368 1928369 - MERMITEA 1710 0.0013 (4/2983) 0 * Os_TE_645060 Os_TE_645060 Chr11 1928360 1928359 - MERMITEA 1710 0.0017 (5/2984) 0 * Os_TE_645061 Os_TE_645056 Chr11 1926895 1923194 - SZ-35LTR 3853 0.3053 (912/2987) 1 Intact Os_TE_645052 Os_TE_645052 Chr11 1923194 1926895 + RETROSAT4_LTR 13504 0.3045 (908/2982) 1 Solo_LTR Os_TE_645056 Os_TE_644981 Chr11 1879222 1879223 + MuDR2_OS 6770 0.0020 (6/2992) 0 * * Os_TE_644948 Chr11 1867959 1867958 - TRUNCATOR 2918 0.0003 (1/2995) 0 * * Os_TE_644938 Chr11 1859213 1859214 - ORSiTETNOOT00199 3501 0.0003 (1/2989) 0 * * Os_TE_644936 Chr11 1858877 1858876 + F1275 157 0.0050 (15/2976) 0 * * Os_TE_644912 Chr11 1847832 1847833 + ORSgTERT00200961 124 0.6914 (1994/2884) 0 * * Os_TE_644901 Chr11 1842383 1842382 - OSTE20 496 0.0003 (1/2910) 0 * * Os_TE_644863 Chr11 1817951 1817952 - RETROSAT4_LTR 13504 0.0022 (4/1780) 0 * * Os_TE_644850 Chr11 1812926 1812927 - STOWAWAY49_OS 241 0.7011 (2097/2991) 0 * * Os_TE_644819 Chr11 1797776 1797777 + STOWAWAY51_OS 246 0.0118 (11/929) 0 * * Os_TE_644781 Chr11 1761946 1761945 - INDITTO 263 0.0195 (55/2816) 0 * * Os_TE_644765 Chr11 1749183 1749184 + ORSgTEMT01601591 242 0.0003 (1/2988) 0 * Os_TE_644764 Os_TE_644764 Chr11 1749182 1749181 + ORSgTEMT01601591 242 0.0003 (1/2986) 0 * Os_TE_644765 Os_TE_644758 Chr11 1746037 1746036 + ORSiTERTOOT00296 5553 0.0013 (4/2988) 0 * * Os_TE_644742 Chr11 1717849 1717848 - ORSgTEMT01601493 303 0.0013 (4/2994) 0 * * Os_TE_644711 Chr11 1701969 1701970 - HARB-1_OS 5166 0.0051 (14/2751) 0 * * Os_TE_644641 Chr11 1656885 1652839 + SZ-67LTR 1540 0.2624 (742/2828) 1 Intact Os_TE_644639 Os_TE_644639 Chr11 1652839 1656840 - RETROSAT5_LTR 13878 0.3025 (898/2969) 1 Solo_LTR Os_TE_644641 Os_TE_644618 Chr11 1637573 1637574 + ENSPM4_OS 11610 0.1302 (390/2996) 0 * * Os_TE_644616 Chr11 1633861 1633862 - ORSiTERTOOT00441 4741 0.0010 (3/2989) 0 * * Os_TE_644587 Chr11 1610753 1610754 + MUDRN5_OS 374 0.0003 (1/2998) 0 * * Os_TE_644584 Chr11 1610154 1610153 + MPING 430 0.0003 (1/2997) 0 * * Os_TE_644554 Chr11 1597953 1597954 + STOWAWAY51_OS 246 0.0004 (1/2742) 0 * * Os_TE_644553 Chr11 1597898 1589419 + SPMLIKE 10989 0.3031 (850/2804) 1 Intact Os_TE_644552 Os_TE_644552 Chr11 1589419 1597899 - ORSgTETN00200001 10994 0.2736 (736/2690) 1 Intact Os_TE_644553 Os_TE_644535 Chr11 1584064 1582982 + ORSgTETN00200005 1121 0.2963 (873/2946) 1 Intact Os_TE_644534 Os_TE_644534 Chr11 1582979 1584061 + CACTA-B 1103 0.2991 (885/2959) 1 Intact Os_TE_644535 Os_TE_644533 Chr11 1582511 1582512 - MPING 430 0.0003 (1/2991) 0 * * Os_TE_644506 Chr11 1571472 1571473 + TRUNCATOR 2918 0.0480 (143/2980) 0 * * Os_TE_644505 Chr11 1571209 1571210 + SPMLIKE 10989 0.0087 (26/2993) 0 * Os_TE_644504 Os_TE_644504 Chr11 1571207 1571206 - ORSgTETN00200001 10994 0.0084 (25/2993) 0 * Os_TE_644505 Os_TE_644503 Chr11 1571049 1571050 + COPIA2-LTR_OS 6433 0.0003 (1/2980) 0 * Os_TE_644502 Os_TE_644502 Chr11 1571045 1571044 - COPIA2-LTR_OS 6433 0.0003 (1/2984) 0 * Os_TE_644503 Os_TE_644494 Chr11 1567153 1567154 + TNR2A 152 0.0037 (11/2980) 0 * Os_TE_644493 Os_TE_644493 Chr11 1567139 1567138 - TNR2A 152 0.0037 (11/2974) 0 * Os_TE_644494 Os_TE_644369 Chr11 1485632 1485633 + ORSgTEMT00100272 356 0.0003 (1/2980) 0 * * Os_TE_644343 Chr11 1477649 1477648 + TWIFB1 3737 0.0009 (1/1083) 0 * * Os_TE_644330 Chr11 1471005 1471006 - RETRO2A_LTR 12895 0.0161 (48/2981) 0 * * Os_TE_644312 Chr11 1454794 1454795 + CLOUD 734 0.0017 (5/2984) 0 * Os_TE_644311 Os_TE_644311 Chr11 1454786 1454785 - CLOUD 734 0.0017 (5/2984) 0 * Os_TE_644312 Os_TE_644297 Chr11 1442512 1442511 + ORSgTEMT01601591 242 0.0003 (1/2997) 0 * * Os_TE_644261 Chr11 1407092 1407091 + SC-7_LTR 4431 0.0177 (53/2990) 0 * * Os_TE_644240 Chr11 1396877 1396876 + STOWAWAY51_OS 246 0.0010 (3/2986) 0 * * Os_TE_644226 Chr11 1390297 1390296 - SZ-35LTR 3853 0.6791 (2027/2985) 0 * * Os_TE_644197 Chr11 1370801 1370802 + HELIA 293 0.0287 (86/2995) 0 * * Os_TE_644173 Chr11 1352998 1352999 + SZ-9LTR 965 0.6643 (1989/2994) 0 * Os_TE_644172 Os_TE_644172 Chr11 1352994 1352993 - SZ-9LTR 965 0.6638 (1976/2977) 0 * Os_TE_644173 Os_TE_644171 Chr11 1352523 1352524 - F569 228 0.0037 (11/2984) 0 * * Os_TE_644140 Chr11 1322664 1322665 + EnSpm-13_OS 11171 0.0003 (1/2919) 0 * Os_TE_644139 Os_TE_644139 Chr11 1322662 1322661 - EnSpm-13_OS 11171 0.0003 (1/2929) 0 * Os_TE_644140 Os_TE_644120 Chr11 1315204 1315203 - HELITRON3_OS 12693 0.0017 (5/2993) 0 * * Os_TE_644108 Chr11 1309925 1309309 - DS-RICE2N 613 0.3018 (903/2992) 1 Intact Os_TE_644107 Os_TE_644107 Chr11 1309309 1309925 + DS-RICE2N 613 0.2976 (887/2981) 1 Intact Os_TE_644108 Os_TE_644045 Chr11 1276814 1276813 - SC-8_LTR 4951 0.0010 (3/2997) 0 * * Os_TE_644016 Chr11 1260728 1260727 + MUDRN1_OS 764 0.0021 (6/2868) 0 * * Os_TE_643965 Chr11 1231983 1231984 - TRUNCATOR2_LTR 2904 0.0007 (2/2932) 0 * * Os_TE_643869 Chr11 1175761 1175762 + RIREX_LTR 8828 0.0003 (1/2995) 0 * Os_TE_643868 Os_TE_643868 Chr11 1175757 1175756 - RIREX_LTR 8828 0.0003 (1/2996) 0 * Os_TE_643869 Os_TE_643847 Chr11 1158364 1158365 - ORSgTEMT01602676 227 0.0334 (100/2995) 0 * Os_TE_643846 Os_TE_643846 Chr11 1158357 1158356 - TREP215 239 0.0340 (102/2996) 0 * Os_TE_643847 Os_TE_643827 Chr11 1157297 1157298 - AMYLTP 383 0.0013 (4/2977) 0 * Os_TE_643826 Os_TE_643826 Chr11 1157288 1157287 + AMYLTP 383 0.0013 (4/2975) 0 * Os_TE_643827 Os_TE_643729 Chr11 1125652 1125651 + JOUZHEN 596 0.0020 (6/2998) 0 * * Os_TE_643701 Chr11 1112066 1112065 + ORSgTEMT01601591 242 0.0020 (6/2997) 0 * * Os_TE_643682 Chr11 1097649 1097648 - STOWAWAY44_OS 240 0.0003 (1/2989) 0 * * Os_TE_643680 Chr11 1095825 1095826 + COPI2_LTR 4733 0.0007 (2/2874) 0 * * Os_TE_643648 Chr11 1077045 1077046 - MPING 430 0.0003 (1/2992) 0 * * Os_TE_643615 Chr11 1052209 1052210 + RIREX_LTR 8828 0.0007 (2/2900) 0 * Os_TE_643614 Os_TE_643614 Chr11 1052205 1052204 - RIREX_LTR 8828 0.0007 (2/2903) 0 * Os_TE_643615 Os_TE_643613 Chr11 1052171 1052172 - COPIA2-LTR_OS 6433 0.0003 (1/2867) 0 * Os_TE_643612 Os_TE_643612 Chr11 1052167 1052166 - COPIA2-LTR_OS 6433 0.0003 (1/2905) 0 * Os_TE_643613 Os_TE_643574 Chr11 1039817 1039816 - TRUNCATOR 2918 0.0010 (3/2903) 0 * Os_TE_643573 Os_TE_643573 Chr11 1039816 1039817 + TRUNCATOR 2918 0.0017 (5/2903) 0 * Os_TE_643574 Os_TE_643571 Chr11 1037361 1037362 + RIRE3_LTR 12054 0.0007 (2/2901) 0 * * Os_TE_643558 Chr11 1033343 1033344 - RIRE3A_LTR 10580 0.0014 (4/2936) 0 * * Os_TE_643524 Chr11 1020074 1020075 - RIREX_LTR 8828 0.0048 (14/2900) 0 * Os_TE_643523 Os_TE_643523 Chr11 1020070 1020069 + RIREX_LTR 8828 0.0045 (13/2890) 0 * Os_TE_643524 Os_TE_643518 Chr11 1017848 1017849 + RIRE2_LTR 11306 0.0004 (1/2855) 0 * Os_TE_643517 Os_TE_643517 Chr11 1017845 1017844 + TRUNCATOR 2918 0.0007 (2/2855) 0 * Os_TE_643518 Os_TE_643508 Chr11 1015897 1015896 - RIREX_LTR 8828 0.0046 (13/2826) 0 * * Os_TE_643251 Chr11 870827 870826 - COPI2_LTR 4733 0.0010 (3/2999) 0 * * Os_TE_643135 Chr11 801351 801350 + MPING 430 0.0054 (16/2982) 0 * * Os_TE_643129 Chr11 796741 796740 + MICROPON-LIKE-2 102 0.5980 (1556/2602) 0 * * Os_TE_643098 Chr11 792133 792134 - INDITTO 263 0.0007 (2/2981) 0 * * Os_TE_643016 Chr11 748333 747957 - TOUNJ-30 377 0.3992 (1160/2906) 1 Intact Os_TE_643015 Os_TE_643015 Chr11 747957 748333 + TOUNJ-30 377 0.3956 (1152/2912) 1 Intact Os_TE_643016 Os_TE_642921 Chr11 715007 715008 - INDITTO 263 0.0003 (1/2959) 0 * * Os_TE_642902 Chr11 712823 712824 + MERMITE18D 1491 0.0003 (1/2944) 0 * * Os_TE_642782 Chr11 650280 650281 - ORSgTEMT01601770 238 0.0017 (5/2994) 0 * * Os_TE_642762 Chr11 638795 638796 + Cassandra_OS-LTR 764 0.0003 (1/2941) 0 * * Os_TE_642699 Chr11 579471 579472 + OSTE20 496 0.1172 (345/2943) 0 * * Os_TE_642644 Chr11 552150 552151 - ORSiTEMT01300001 950 0.0003 (1/2975) 0 * * Os_TE_642633 Chr11 550811 550810 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * * Os_TE_642613 Chr11 544654 544655 - RIREX_LTR 8828 0.0611 (176/2881) 0 * Os_TE_642612 Os_TE_642612 Chr11 544650 544649 + RIREX_LTR 8828 0.0659 (188/2851) 0 * Os_TE_642613 Os_TE_642611 Chr11 544467 544466 + TRUNCATOR 2918 0.0696 (183/2631) 0 * * Os_TE_642590 Chr11 540701 540702 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * * Os_TE_642548 Chr11 525987 525988 + COPI2_LTR 4733 0.0003 (1/2893) 0 * Os_TE_642547 Os_TE_642547 Chr11 525983 525982 - COPI2_LTR 4733 0.0003 (1/2858) 0 * Os_TE_642548 Os_TE_642504 Chr11 510059 510060 + RIREX_LTR 8828 0.0003 (1/2993) 0 * Os_TE_642503 Os_TE_642503 Chr11 510055 510054 - RIREX_LTR 8828 0.0003 (1/2995) 0 * Os_TE_642504 Os_TE_642458 Chr11 480728 480729 + TWIF 586 0.0101 (30/2980) 0 * * Os_TE_642455 Chr11 480338 480339 - SZ-22_LTR 4403 0.0003 (1/2986) 0 * Os_TE_642454 Os_TE_642454 Chr11 480334 480333 + ORSiTERTOOT00226 792 0.0003 (1/2984) 0 * Os_TE_642455 Os_TE_642414 Chr11 438913 438914 - TRUNCATOR 2918 0.0003 (1/2992) 0 * * Os_TE_642411 Chr11 438204 438203 - SZ-55_LTR 10318 0.2800 (836/2986) 0 * * Os_TE_642330 Chr11 403121 403120 + RIREX_LTR 8828 0.0017 (5/2974) 0 * * Os_TE_642325 Chr11 401969 401968 + NDNA1TNA_OS 334 0.0010 (2/1978) 0 * * Os_TE_642319 Chr11 390742 390741 - ORSgTEMT01600790 236 0.0446 (133/2984) 0 * * Os_TE_642261 Chr11 349394 349395 + ORSiTERTOOT00296 5553 0.0023 (7/2986) 0 * Os_TE_642260 Os_TE_642260 Chr11 349390 349389 - SC-3_LTR 5748 0.0023 (7/2988) 0 * Os_TE_642261 Os_TE_642232 Chr11 334229 334230 - COPIA2-LTR_OS 6433 0.0003 (1/2981) 0 * * Os_TE_642177 Chr11 292292 292291 - AMYLTP 383 0.0013 (4/2970) 0 * * Os_TE_642159 Chr11 280705 280706 - SZ-52_LTR 13107 0.0003 (1/2958) 0 * * Os_TE_642151 Chr11 274269 274268 + SZ-62LTR 3649 0.0024 (7/2949) 0 * * Os_TE_642106 Chr11 262719 262718 - SZ-22_LTR 4403 0.0070 (21/2982) 0 * * Os_TE_642102 Chr11 256834 256833 - ORSgTEMT01602467 227 0.0013 (4/2975) 0 * * Os_TE_642101 Chr11 256805 256806 - ORSiTERTOOT00333 4719 0.0003 (1/2977) 0 * * Os_TE_642092 Chr11 251982 251981 + AMYLTP 383 0.0027 (8/2978) 0 * * Os_TE_642037 Chr11 219672 219673 + ORSgTETNOOT01834 251 0.0004 (1/2794) 0 * * Os_TE_642021 Chr11 212453 212454 - CACTA-J 1159 0.0013 (4/2964) 0 * * Os_TE_642011 Chr11 209811 204437 - SZ-62LTR 3649 0.3967 (1154/2909) 1 Intact * Os_TE_641997 Chr11 196004 196003 + ORSgTETNOOT00032 218 0.0027 (8/2961) 0 * * Os_TE_641910 Chr11 162607 162606 - OSLINE1-2 7128 0.0003 (1/2959) 0 * * Os_TE_641902 Chr11 157534 157535 - INDITTO 263 0.0007 (2/2955) 0 * Os_TE_641901 Os_TE_641901 Chr11 157532 157531 + INDITTO 263 0.0007 (2/2952) 0 * Os_TE_641902 Os_TE_641895 Chr11 152115 152116 + ORSgTETNOOT00908 242 0.0042 (12/2877) 0 * * Os_TE_641892 Chr11 152073 152074 - SZ-62LTR 3649 0.6137 (1808/2946) 0 * Os_TE_641891 Os_TE_641891 Chr11 152069 152068 + SZ-62LTR 3649 0.6085 (1780/2925) 0 * Os_TE_641892 Os_TE_641786 Chr11 1039 1040 + RIRE1_LTR 8322 0.0020 (5/2481) 0 * * Os_TE_766875 Chr10 23194389 23194388 + ORSgTEMT00101341 314 0.0737 (220/2986) 0 * Os_TE_766874 Os_TE_766874 Chr10 23194385 23194386 + ORSgTEMT00100428 339 0.0735 (220/2992) 0 * Os_TE_766875 Os_TE_766826 Chr10 23155559 23155558 + RETRO2A_LTR 12895 0.0003 (1/2991) 0 * * Os_TE_766814 Chr10 23145818 23145819 + ORSgTETNOOT01998 254 0.6976 (2081/2983) 0 * * Os_TE_766808 Chr10 23144693 23144694 - CACTA-H 1152 0.0003 (1/2947) 0 * * Os_TE_766801 Chr10 23139010 23131291 - MDR2 6967 0.3128 (924/2954) 1 Intact Os_TE_766796 Os_TE_766796 Chr10 23131291 23139010 + MDR2 6967 0.3143 (930/2959) 1 Intact Os_TE_766801 Os_TE_766790 Chr10 23128900 23128899 + ORSgTETNOOT00908 242 0.0742 (222/2990) 0 * * Os_TE_766779 Chr10 23125324 23125323 + RETROSAT4_LTR 13504 0.6590 (1971/2991) 0 * * Os_TE_766761 Chr10 23116468 23116469 - STOWAWAY51_OS 246 0.0731 (219/2996) 0 * * Os_TE_766758 Chr10 23115392 23115393 - STOWAWAY51_OS 246 0.0003 (1/2987) 0 * * Os_TE_766722 Chr10 23100800 23100801 - SC-8_LTR 4951 0.0003 (1/2990) 0 * Os_TE_766721 Os_TE_766721 Chr10 23100796 23100795 + SC-8_LTR 4951 0.0003 (1/2987) 0 * Os_TE_766722 Os_TE_766692 Chr10 23084570 23084571 + ORSgTETNOOT00908 242 0.0003 (1/2996) 0 * * Os_TE_766673 Chr10 23075680 23075681 - OLO24 345 0.0003 (1/2964) 0 * Os_TE_766672 Os_TE_766672 Chr10 23075678 23075677 + OLO24 345 0.0003 (1/2969) 0 * Os_TE_766673 Os_TE_766661 Chr10 23066452 23066451 - ORSiTETNOOT00216 3569 0.0007 (2/2946) 0 * * Os_TE_766659 Chr10 23061693 23061692 - LINE-05_OS 6739 0.0017 (5/2996) 0 * * Os_TE_766654 Chr10 23054578 23054579 - SC-3_LTR 5748 0.0003 (1/2995) 0 * Os_TE_766653 Os_TE_766653 Chr10 23054574 23054573 + ORSiTERTOOT00296 5553 0.0003 (1/2994) 0 * Os_TE_766654 Os_TE_766590 Chr10 23018738 23018739 + STOWAWAY51_OS 246 0.0010 (3/2913) 0 * * Os_TE_766588 Chr10 23016928 23016929 - ORSgTEMT01602267 239 0.0076 (4/526) -1 * * Os_TE_766579 Chr10 23014475 23014476 + ORSgTETN00200005 1121 0.0003 (1/2977) 0 * * Os_TE_766577 Chr10 23014201 23014202 + TELIA 141 0.0007 (2/2989) 0 * Os_TE_766576 Os_TE_766576 Chr10 23014193 23014192 - TELIA 141 0.0007 (2/2991) 0 * Os_TE_766577 Os_TE_766569 Chr10 23011831 23011832 - ORSgTEMT01600902 239 0.0003 (1/2988) 0 * * Os_TE_766566 Chr10 23010792 23010793 + ORSgTEMT01602004 234 0.0010 (3/2997) 0 * * Os_TE_766562 Chr10 23010001 23010002 - ORSgTEMT01601208 238 0.0017 (5/2974) 0 * * Os_TE_766544 Chr10 23001049 23001050 - ORSgTEMT01700661 151 0.6711 (1863/2776) 0 * * Os_TE_766540 Chr10 22995599 22995600 - TNR2A 152 0.0003 (1/2997) 0 * * Os_TE_766535 Chr10 22990087 22990086 - ORSgTEMT02400246 177 0.0010 (3/2974) 0 * * Os_TE_766529 Chr10 22985250 22984760 + OSTE20 496 0.3105 (929/2992) 1 Intact Os_TE_766528 Os_TE_766528 Chr10 22984759 22985247 - OSTE20 496 0.3129 (937/2995) 1 Intact Os_TE_766529 Os_TE_766511 Chr10 22981411 22981173 + ORSgTEMT01602181 239 0.7571 (717/947) 1 Intact Os_TE_766509 Os_TE_766509 Chr10 22981173 22981411 - ORSgTEMT01601432 239 0.7585 (716/944) 1 Intact Os_TE_766511 Os_TE_766508 Chr10 22980407 22980408 + ORSiTERTOOT00367 5639 0.0010 (3/2948) 0 * Os_TE_766507 Os_TE_766507 Chr10 22980403 22980402 - ORSiTERTOOT00367 5639 0.0010 (3/2956) 0 * Os_TE_766508 Os_TE_766506 Chr10 22979424 22979423 + COPI2_LTR 4733 0.0003 (1/2979) 0 * * Os_TE_766483 Chr10 22972533 22972534 + COPI2_LTR 4733 0.0164 (48/2925) 0 * Os_TE_766482 Os_TE_766482 Chr10 22972529 22972528 - COPI2_LTR 4733 0.0034 (10/2899) 0 * Os_TE_766483 Os_TE_766439 Chr10 22954406 22954405 - OSTE24 683 0.0340 (101/2972) 0 * * Os_TE_766438 Chr10 22953238 22953239 - COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_766437 Os_TE_766437 Chr10 22953234 22953233 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_766438 Os_TE_766435 Chr10 22951647 22951648 + ORSiCMCM00100017 5674 0.0013 (4/2988) 0 * Os_TE_766434 Os_TE_766434 Chr10 22951643 22951642 - SZ-36LTR 5825 0.0013 (4/2998) 0 * Os_TE_766435 Os_TE_766424 Chr10 22946968 22946969 + ORSiCMCM00100019 2717 0.6558 (1949/2972) 0 * Os_TE_766423 Os_TE_766423 Chr10 22946966 22946965 - RETROSAT2LTR 12796 0.6604 (1974/2989) 0 * Os_TE_766424 Os_TE_766383 Chr10 22926304 22926305 - ORSgTEMT04800063 360 0.0003 (1/2950) 0 * * Os_TE_766373 Chr10 22919087 22919086 + ORSgTEMT01601983 238 0.0213 (64/2999) 0 * Os_TE_766372 Os_TE_766372 Chr10 22919084 22919085 - ORSgTEMT01601432 239 0.0207 (62/2997) 0 * Os_TE_766373 Os_TE_766361 Chr10 22917173 22917174 + ORSiTERTOOT00034 791 0.0003 (1/2984) 0 * Os_TE_766360 Os_TE_766360 Chr10 22917169 22917168 - SZ-22_LTR 4403 0.0003 (1/2988) 0 * Os_TE_766361 Os_TE_766314 Chr10 22888556 22888557 - SZ-40LTR 2465 0.0010 (3/2992) 0 * * Os_TE_766310 Chr10 22885267 22888276 + ORSiTERTOOT00028 8600 0.3372 (1009/2992) 1 Intact * Os_TE_766309 Chr10 22884729 22884730 + RETRO2A_LTR 12895 0.0187 (56/2999) 0 * Os_TE_766308 Os_TE_766308 Chr10 22884725 22884724 - RETRO2_LTR 12874 0.0180 (54/2999) 0 * Os_TE_766309 Os_TE_766306 Chr10 22884366 22880519 - SZ-35LTR 3853 0.3388 (1016/2999) 1 Intact Os_TE_766303 Os_TE_766303 Chr10 22880519 22884367 + RETROSAT4_LTR 13504 0.3283 (975/2970) 1 Solo_LTR Os_TE_766306 Os_TE_766284 Chr10 22870076 22870075 - ORSgTERT00201216 11284 0.0003 (1/2990) 0 * * Os_TE_766282 Chr10 22868752 22868751 - ORSgTEMT00900741 219 0.0010 (3/2986) 0 * * Os_TE_766243 Chr10 22850654 22850655 + ORSiTERTOOT00226 792 0.0030 (8/2709) 0 * Os_TE_766242 Os_TE_766242 Chr10 22850650 22850649 - SZ-22_LTR 4403 0.0034 (9/2683) 0 * Os_TE_766243 Os_TE_766240 Chr10 22849833 22849595 - ORSgTEMT01601493 303 0.2915 (866/2971) 1 Intact * Os_TE_766214 Chr10 22846689 22846688 + TREP219 104 0.0021 (6/2908) 0 * * Os_TE_766172 Chr10 22833328 22833329 - COPIA2-LTR_OS 6433 0.0003 (1/2986) 0 * Os_TE_766171 Os_TE_766171 Chr10 22833324 22833323 + COPIA2-LTR_OS 6433 0.0003 (1/2982) 0 * Os_TE_766172 Os_TE_766164 Chr10 22831072 22831073 - ORSgTEMT02400179 221 0.0003 (1/2992) 0 * Os_TE_766163 Os_TE_766163 Chr10 22831071 22831070 - TYPEM 227 0.0003 (1/2994) 0 * Os_TE_766164 Os_TE_766159 Chr10 22829774 22829775 - MPING 430 0.0003 (1/2990) 0 * Os_TE_766158 Os_TE_766158 Chr10 22829772 22829771 + MPING 430 0.0003 (1/2987) 0 * Os_TE_766159 Os_TE_766133 Chr10 22817240 22816142 - RETRO2_LTR 12874 0.3268 (963/2947) 1 Solo_LTR Os_TE_766132 Os_TE_766132 Chr10 22816148 22817240 + RETRO2_LTR 12874 0.3140 (913/2908) 1 Solo_LTR Os_TE_766133 Os_TE_766085 Chr10 22794846 22794845 - RIREX_LTR 8828 0.0003 (1/2991) 0 * * Os_TE_766082 Chr10 22793848 22793847 - RIREX_LTR 8828 0.0003 (1/2999) 0 * * Os_TE_766064 Chr10 22788556 22788555 + TRUNCATOR 2918 0.1438 (421/2927) 0 * Os_TE_766063 Os_TE_766063 Chr10 22788555 22788556 - TRUNCATOR 2918 0.1446 (423/2926) 0 * Os_TE_766064 Os_TE_766056 Chr10 22787374 22787375 - MPING 430 0.0003 (1/2976) 0 * Os_TE_766055 Os_TE_766055 Chr10 22787372 22787371 + MPING 430 0.0003 (1/2985) 0 * Os_TE_766056 Os_TE_766025 Chr10 22767955 22767956 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_766024 Os_TE_766024 Chr10 22767951 22767950 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_766025 Os_TE_766019 Chr10 22764203 22764204 + INDITTO 263 0.0623 (185/2971) 0 * Os_TE_766018 Os_TE_766018 Chr10 22764201 22764200 - INDITTO 263 0.0613 (182/2971) 0 * Os_TE_766019 Os_TE_766017 Chr10 22763445 22763444 + NDNA1TNA_OS 334 0.5419 (1599/2951) 0 * Os_TE_766016 Os_TE_766016 Chr10 22763444 22763445 + ORSgTEMT00101674 340 0.5493 (1638/2982) 0 * Os_TE_766017 Os_TE_766005 Chr10 22762600 22762601 - RIRE3A_LTR 10580 0.0769 (229/2977) 0 * Os_TE_766004 Os_TE_766004 Chr10 22762596 22762595 + RIRE3A_LTR 10580 0.0735 (218/2966) 0 * Os_TE_766005 Os_TE_765989 Chr10 22758780 22758166 - DS-RICE2N 613 0.3270 (977/2988) 1 Intact Os_TE_765986 Os_TE_765986 Chr10 22758166 22758780 + DS-RICE2N 613 0.3271 (979/2993) -1 Intact Os_TE_765989 Os_TE_765974 Chr10 22749062 22749063 - RETRO1_LTR 8314 0.0010 (3/2865) 0 * * Os_TE_765959 Chr10 22747983 22747984 - MPING 430 0.0023 (7/2995) 0 * Os_TE_765958 Os_TE_765958 Chr10 22747981 22747980 + MPING 430 0.0023 (7/2998) 0 * Os_TE_765959 Os_TE_765955 Chr10 22746133 22746132 + ORSgTEMT00500476 150 0.0004 (1/2775) 0 * * Os_TE_765949 Chr10 22745430 22745431 + MPING 430 0.0003 (1/2970) 0 * Os_TE_765948 Os_TE_765948 Chr10 22745428 22745427 - MPING 430 0.0003 (1/2923) 0 * Os_TE_765949 Os_TE_765944 Chr10 22742819 22742818 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * * Os_TE_765940 Chr10 22741206 22741207 - COPI2_LTR 4733 0.0542 (137/2528) 0 * Os_TE_765939 Os_TE_765939 Chr10 22741202 22741201 + COPI2_LTR 4733 0.0603 (151/2504) 0 * Os_TE_765940 Os_TE_765936 Chr10 22740275 22740276 + RETRO2_LTR 12874 0.0010 (3/2987) 0 * Os_TE_765935 Os_TE_765935 Chr10 22740271 22740270 - RETRO2_LTR 12874 0.0010 (3/2991) 0 * Os_TE_765936 Os_TE_765921 Chr10 22729522 22729521 - STOWAWAY51_OS 246 0.0003 (1/2979) 0 * Os_TE_765920 Os_TE_765920 Chr10 22729519 22729520 - STOWAWAY44_OS 240 0.0003 (1/2975) 0 * Os_TE_765921 Os_TE_765905 Chr10 22725611 22725610 - ORSgTETNOOT02574 189 0.0200 (24/1201) 0 * * Os_TE_765904 Chr10 22725243 22725244 - COPI2_LTR 4733 0.0027 (8/2976) 0 * Os_TE_765903 Os_TE_765903 Chr10 22725235 22725234 + COPI2_LTR 4733 0.0013 (4/2971) 0 * Os_TE_765904 Os_TE_765898 Chr10 22724490 22724489 + ORSgTEMT01602413 239 0.0007 (2/2924) 0 * * Os_TE_765850 Chr10 22708943 22708944 - CACTA-H 1152 0.1160 (347/2991) 0 * * Os_TE_765847 Chr10 22707754 22707753 - SINE8_OS 120 0.0007 (2/2944) 0 * * Os_TE_765844 Chr10 22705323 22705322 - ORSgTETNOOT01534 208 0.0003 (1/2993) 0 * * Os_TE_765824 Chr10 22689272 22689273 - FOCUS 257 0.0017 (5/2860) 0 * Os_TE_765823 Os_TE_765823 Chr10 22689270 22689269 + FOCUS 257 0.0017 (5/2954) 0 * Os_TE_765824 Os_TE_765822 Chr10 22689229 22689230 - OSTONOR1_LTR 6440 0.6879 (2050/2980) 0 * Os_TE_765821 Os_TE_765821 Chr10 22689225 22689224 + OSTONOR1_LTR 6440 0.6817 (2011/2950) 0 * Os_TE_765822 Os_TE_765814 Chr10 22687394 22687395 + ORSgTEMT01601591 242 0.0003 (1/2962) 0 * * Os_TE_765813 Chr10 22686866 22686867 + ORSgTETNOOT01834 251 0.0061 (18/2961) 0 * * Os_TE_765804 Chr10 22680051 22680050 + ORSgTETNOOT00908 242 0.6006 (1788/2977) 0 * * Os_TE_765772 Chr10 22663498 22659636 - SZ-35LTR 3853 0.1770 (530/2994) 1 Intact Os_TE_765770 Os_TE_765770 Chr10 22659636 22663498 + RETROSAT4_LTR 13504 0.1814 (541/2983) 1 Solo_LTR Os_TE_765772 Os_TE_765650 Chr10 22608689 22624540 - SZ-35LTR 3853 0.3225 (955/2961) 1 Intact * Os_TE_765645 Chr10 22607613 22607614 - INDITTO 263 0.0027 (8/2943) 0 * * Os_TE_765628 Chr10 22601273 22601274 - RETROSAT5_LTR 13878 0.5064 (1512/2986) 0 * Os_TE_765627 Os_TE_765627 Chr10 22601269 22601268 + ORSiTERT00200145 12238 0.4937 (1441/2919) 0 * Os_TE_765628 Os_TE_765621 Chr10 22600189 22600190 + RIREX_LTR 8828 0.0003 (1/2978) 0 * Os_TE_765620 Os_TE_765620 Chr10 22600185 22600184 - RIREX_LTR 8828 0.0003 (1/2990) 0 * Os_TE_765621 Os_TE_765619 Chr10 22600018 22600019 + COPIA2-LTR_OS 6433 0.0197 (59/2994) 0 * Os_TE_765618 Os_TE_765618 Chr10 22600014 22600013 - COPIA2-LTR_OS 6433 0.0210 (63/2993) 0 * Os_TE_765619 Os_TE_765615 Chr10 22599785 22599786 - ORSiTETNOOT00216 3569 0.1838 (545/2965) 0 * Os_TE_765614 Os_TE_765614 Chr10 22599778 22599777 + TWIFBIG 3567 0.1810 (534/2950) 0 * Os_TE_765615 Os_TE_765596 Chr10 22595003 22595002 + MERMITEA 1710 0.3822 (592/1549) 0 * * Os_TE_765591 Chr10 22592142 22592143 + COPIA2-LTR_OS 6433 0.0007 (2/2975) 0 * Os_TE_765590 Os_TE_765590 Chr10 22592138 22592137 - COPIA2-LTR_OS 6433 0.0007 (2/2981) 0 * Os_TE_765591 Os_TE_765577 Chr10 22585585 22585584 - RETRO1_LTR 8314 0.1769 (525/2968) 0 * * Os_TE_765576 Chr10 22584944 22584945 + MuDR2_OS 6770 0.0813 (241/2964) 0 * Os_TE_765575 Os_TE_765575 Chr10 22584935 22584934 - MuDR2_OS 6770 0.0788 (234/2968) 0 * Os_TE_765576 Os_TE_765568 Chr10 22581883 22581882 + ORSgTEMT01602181 239 0.0013 (2/1495) 0 * * Os_TE_765542 Chr10 22578383 22578382 + ORSgTETNOOT02577 232 0.3252 (481/1479) 0 * * Os_TE_765540 Chr10 22577862 22577863 + TWIFB1 3737 0.0007 (1/1479) 0 * * Os_TE_765523 Chr10 22573277 22573278 - ORSgTEMT01601493 303 0.0017 (5/2994) 0 * Os_TE_765522 Os_TE_765522 Chr10 22573274 22573273 + ORSgTEMT01601627 228 0.0010 (3/2994) 0 * Os_TE_765523 Os_TE_765519 Chr10 22572896 22572897 - COPI2_LTR 4733 0.0013 (4/2996) 0 * Os_TE_765518 Os_TE_765518 Chr10 22572892 22572891 + COPI2_LTR 4733 0.0013 (4/2997) 0 * Os_TE_765519 Os_TE_765512 Chr10 22568329 22568330 + ORSgTETNOOT01219 231 0.0003 (1/2946) 0 * Os_TE_765511 Os_TE_765511 Chr10 22568321 22568320 + ORSgTETNOOT00908 242 0.0003 (1/2947) 0 * Os_TE_765512 Os_TE_765503 Chr10 22563299 22563300 - TOURIST6A_OS 214 0.0003 (1/2981) 0 * * Os_TE_765455 Chr10 22546787 22546788 + MPING 430 0.0003 (1/2996) 0 * Os_TE_765454 Os_TE_765454 Chr10 22546785 22546784 - MPING 430 0.0003 (1/2994) 0 * Os_TE_765455 Os_TE_765453 Chr10 22546706 22546707 - COPIA2-LTR_OS 6433 0.0017 (5/2992) 0 * Os_TE_765452 Os_TE_765452 Chr10 22546702 22546701 + COPIA2-LTR_OS 6433 0.0017 (5/2990) 0 * Os_TE_765453 Os_TE_765451 Chr10 22545761 22545762 - COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_765450 Os_TE_765450 Chr10 22545757 22545756 + COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_765451 Os_TE_765449 Chr10 22545647 22545648 - ORSgTETN00200001 10994 0.0003 (1/2993) 0 * Os_TE_765448 Os_TE_765448 Chr10 22545645 22545644 + SPMLIKE 10989 0.0003 (1/2993) 0 * Os_TE_765449 Os_TE_765447 Chr10 22544833 22544832 + ORSgTEMT01602051 240 0.0013 (4/2991) 0 * * Os_TE_765421 Chr10 22536069 22536070 + MPING 430 0.0003 (1/2997) 0 * Os_TE_765420 Os_TE_765420 Chr10 22536067 22536066 - MPING 430 0.0003 (1/2998) 0 * Os_TE_765421 Os_TE_765417 Chr10 22533603 22533604 + RETROSAT2LTR 12796 0.0003 (1/2997) 0 * * Os_TE_765415 Chr10 22533594 22533595 + RIREX_LTR 8828 0.0003 (1/2998) 0 * * Os_TE_765407 Chr10 22531911 22531912 + HARB-1_OS 5166 0.2030 (607/2990) 0 * Os_TE_765406 Os_TE_765406 Chr10 22531909 22531908 - HARB-1_OS 5166 0.2071 (620/2994) 0 * Os_TE_765407 Os_TE_765400 Chr10 22525158 22525159 + ORSiTERTOOT00296 5553 0.0007 (2/2998) 0 * Os_TE_765399 Os_TE_765399 Chr10 22525154 22525153 - SC-3_LTR 5748 0.0007 (2/2998) 0 * Os_TE_765400 Os_TE_765361 Chr10 22512178 22512177 + CRM-LTR_OS 7749 0.0003 (1/2998) 0 * * Os_TE_765351 Chr10 22506451 22506450 - ORSgTEMT00700002 381 0.0003 (1/2977) 0 * Os_TE_765350 Os_TE_765350 Chr10 22506445 22506446 + ORSgTEMT00700017 386 0.0003 (1/2977) 0 * Os_TE_765351 Os_TE_765337 Chr10 22501750 22501751 + RIREX_LTR 8828 0.0003 (1/2994) 0 * * Os_TE_765335 Chr10 22501213 22501212 + ORSgTEMT06100010 269 0.0007 (2/2998) 0 * Os_TE_765334 Os_TE_765334 Chr10 22501193 22501194 - ORSgTEMT06100010 269 0.0007 (2/2996) 0 * Os_TE_765335 Os_TE_765332 Chr10 22500122 22500123 + SINE1OS 127 0.0600 (179/2984) 0 * * Os_TE_765299 Chr10 22487571 22487572 - STOWAWAY50_OS 174 0.0687 (177/2577) 0 * * Os_TE_765291 Chr10 22477344 22477345 - MuDR2_OS 6770 0.0003 (1/2998) 0 * Os_TE_765290 Os_TE_765290 Chr10 22477335 22477334 - MuDR3_OS 8604 0.0003 (1/2998) 0 * Os_TE_765291 Os_TE_765274 Chr10 22468650 22468651 - RIRE3A_LTR 10580 0.0020 (6/2997) 0 * Os_TE_765273 Os_TE_765273 Chr10 22468646 22468645 + RIRE3A_LTR 10580 0.0020 (6/2999) 0 * Os_TE_765274 Os_TE_765249 Chr10 22459011 22459012 + INDITTO 263 0.0017 (5/2991) 0 * Os_TE_765248 Os_TE_765248 Chr10 22459009 22459008 - INDITTO 263 0.0017 (5/2993) 0 * Os_TE_765249 Os_TE_765236 Chr10 22453807 22453806 - ORSgTEMT01602413 239 0.1680 (502/2988) 0 * * Os_TE_765214 Chr10 22444273 22444272 - TYPEM 227 0.1084 (315/2905) 0 * * Os_TE_765202 Chr10 22440809 22439420 + OSTE33 1012 0.8337 (2442/2929) 1 Intact Os_TE_765200 Os_TE_765200 Chr10 22439420 22440809 + OSTE33 1012 0.8363 (2478/2963) 1 Intact Os_TE_765202 Os_TE_765184 Chr10 22433383 22433382 + INDITTO 263 0.1684 (498/2957) 0 * * Os_TE_765158 Chr10 22424327 22424328 + COPI2_LTR 4733 0.0003 (1/2992) 0 * * Os_TE_765156 Chr10 22424009 22424010 + ORSiTERT00200145 12238 0.0007 (2/2964) 0 * * Os_TE_765154 Chr10 22423798 22423799 - RETROSAT2LTR 12796 0.0004 (1/2611) 0 * * Os_TE_765125 Chr10 22412321 22412322 + ORSiTERTOOT00296 5553 0.0003 (1/2990) 0 * Os_TE_765124 Os_TE_765124 Chr10 22412317 22412316 - SC-3_LTR 5748 0.0003 (1/2991) 0 * Os_TE_765125 Os_TE_765121 Chr10 22408572 22408573 - SC-8_LTR 4951 0.0010 (3/2993) 0 * Os_TE_765120 Os_TE_765120 Chr10 22408568 22408567 + SC-8_LTR 4951 0.0010 (3/2994) 0 * Os_TE_765121 Os_TE_765118 Chr10 22408473 22402726 + SC-3_LTR 5748 0.8776 (2623/2989) 1 Intact Os_TE_765116 Os_TE_765116 Chr10 22402726 22408473 - SC-3_LTR 5748 0.8769 (2622/2990) 1 Intact Os_TE_765118 Os_TE_765114 Chr10 22401533 22401534 + SC-8_LTR 4951 0.0010 (3/2953) 0 * * Os_TE_765108 Chr10 22399747 22399748 - NDNA2TNA_OS 346 0.0017 (5/2935) 0 * Os_TE_765107 Os_TE_765107 Chr10 22399745 22399744 + NDNA2TNA_OS 346 0.0017 (5/2951) 0 * Os_TE_765108 Os_TE_765103 Chr10 22397388 22397389 - COPIA2-LTR_OS 6433 0.0003 (1/2932) 0 * * Os_TE_765097 Chr10 22393874 22393873 - SC-8_LTR 4951 0.0003 (1/2971) 0 * * Os_TE_765084 Chr10 22387077 22387078 - Hopscotch_LTR 4876 0.1273 (381/2993) 0 * Os_TE_765083 Os_TE_765083 Chr10 22387073 22387072 + Hopscotch_LTR 4876 0.1274 (381/2991) 0 * Os_TE_765084 Os_TE_765082 Chr10 22385810 22385809 - STOWAWAY51_OS 246 0.0017 (5/2976) 0 * * Os_TE_765079 Chr10 22384033 22384032 + ORSgTEMT01601591 242 0.0067 (20/2998) 0 * Os_TE_765078 Os_TE_765078 Chr10 22384027 22384028 + STOWAWAY51_OS 246 0.0057 (17/2994) 0 * Os_TE_765079 Os_TE_765076 Chr10 22383567 22383566 + ORSgTEMT01601591 242 0.0147 (44/2994) 0 * Os_TE_765075 Os_TE_765075 Chr10 22383561 22383562 + STOWAWAY51_OS 246 0.0147 (44/2987) 0 * Os_TE_765076 Os_TE_765048 Chr10 22379016 22379015 - STOWAWAY51_OS 246 0.0003 (1/2997) 0 * Os_TE_765047 Os_TE_765047 Chr10 22379010 22379011 + STOWAWAY51_OS 246 0.0003 (1/2998) 0 * Os_TE_765048 Os_TE_765039 Chr10 22377027 22377028 - INDITTO 263 0.0017 (5/2941) 0 * Os_TE_765038 Os_TE_765038 Chr10 22377025 22377024 + INDITTO 263 0.0017 (5/2925) 0 * Os_TE_765039 Os_TE_765026 Chr10 22372815 22372379 + ORSiTERTOOT00368 5673 0.8822 (2643/2996) 1 Intact Os_TE_765025 Os_TE_765025 Chr10 22372379 22372814 - ORSiTERTOOT00368 5673 0.8807 (2629/2985) 1 Intact Os_TE_765026 Os_TE_765018 Chr10 22369777 22369778 - INDITTO 263 0.0041 (11/2705) 0 * Os_TE_765017 Os_TE_765017 Chr10 22369775 22369774 + INDITTO 263 0.0040 (11/2736) 0 * Os_TE_765018 Os_TE_765013 Chr10 22369109 22369451 - NDNA2TNA_OS 346 0.8791 (2618/2978) 1 Intact * Os_TE_765012 Chr10 22368700 22368701 - MPING 430 0.0030 (9/2997) 0 * Os_TE_765011 Os_TE_765011 Chr10 22368698 22368697 + MPING 430 0.0027 (8/2998) 0 * Os_TE_765012 Os_TE_765010 Chr10 22368615 22368616 + AMYLTP 383 0.1114 (333/2989) 0 * Os_TE_765009 Os_TE_765009 Chr10 22368607 22368606 - AMYLTP 383 0.1156 (346/2994) 0 * Os_TE_765010 Os_TE_764981 Chr10 22351595 22351596 + ORSiTERTOOT00296 5553 0.0034 (10/2977) 0 * * Os_TE_764974 Chr10 22347037 22347038 + ORSiTEMT00100001 540 0.0007 (2/2986) 0 * * Os_TE_764966 Chr10 22340338 22340339 + SC-8_LTR 4951 0.0007 (2/2955) 0 * * Os_TE_764949 Chr10 22331726 22331727 - ORSgTETNOOT00908 242 0.0007 (2/2991) 0 * Os_TE_764948 Os_TE_764948 Chr10 22331724 22331723 + ORSgTETNOOT00908 242 0.0007 (2/2994) 0 * Os_TE_764949 Os_TE_764914 Chr10 22313711 22313712 + MPING 430 0.0003 (1/2995) 0 * Os_TE_764913 Os_TE_764913 Chr10 22313709 22313708 - MPING 430 0.0003 (1/2992) 0 * Os_TE_764914 Os_TE_764903 Chr10 22306180 22300481 + ORSiTERTOOT00296 5553 0.5978 (1788/2991) 1 Intact Os_TE_764900 Os_TE_764900 Chr10 22300481 22305948 - SC-3_LTR 5748 0.6017 (1804/2998) 1 Intact Os_TE_764903 Os_TE_764884 Chr10 22293596 22293595 - TYPEM 227 0.0003 (1/2888) 0 * * Os_TE_764878 Chr10 22290334 22290335 + COPI2_LTR 4733 0.0013 (4/2974) 0 * Os_TE_764877 Os_TE_764877 Chr10 22290330 22290329 - COPI2_LTR 4733 0.0013 (4/2991) 0 * Os_TE_764878 Os_TE_764862 Chr10 22283210 22283211 - TYPEM 227 0.7847 (2343/2986) 0.93 * * Os_TE_764834 Chr10 22271612 22271611 + STOWAWAY51_OS 246 0.0007 (2/2980) 0 * Os_TE_764833 Os_TE_764833 Chr10 22271606 22271607 - STOWAWAY51_OS 246 0.0003 (1/2972) 0 * Os_TE_764834 Os_TE_764826 Chr10 22269406 22269407 - MPING 430 0.0010 (3/2996) 0 * Os_TE_764825 Os_TE_764825 Chr10 22269404 22269403 + MPING 430 0.0013 (4/2996) 0 * Os_TE_764826 Os_TE_764821 Chr10 22266973 22266974 - COPI2_LTR 4733 0.0003 (1/2998) 0 * * Os_TE_764819 Chr10 22265970 22265971 + COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_764818 Os_TE_764818 Chr10 22265966 22265965 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_764819 Os_TE_764817 Chr10 22265912 22265913 + STOWAWAY49_OS 241 0.0003 (1/2990) 0 * * Os_TE_764807 Chr10 22264240 22264241 - COPI2_LTR 4733 0.0003 (1/2984) 0 * Os_TE_764806 Os_TE_764806 Chr10 22264236 22264235 + COPI2_LTR 4733 0.0003 (1/2990) 0 * Os_TE_764807 Os_TE_764757 Chr10 22236036 22236037 - ORSgTETN00100078 209 0.0010 (1/1012) -1 * * Os_TE_764737 Chr10 22219371 22219372 - SC-8_LTR 4951 0.0003 (1/2990) 0 * Os_TE_764736 Os_TE_764736 Chr10 22219367 22219366 + SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_764737 Os_TE_764727 Chr10 22214097 22214098 + COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_764726 Os_TE_764726 Chr10 22214093 22214092 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_764727 Os_TE_764725 Chr10 22213789 22213790 + COPIA2-LTR_OS 6433 0.0770 (218/2831) 0 * Os_TE_764724 Os_TE_764724 Chr10 22213785 22213784 - COPIA2-LTR_OS 6433 0.1024 (306/2989) 0 * Os_TE_764725 Os_TE_764723 Chr10 22213782 22213783 + SZ-55_LTR 10318 0.0289 (84/2902) 0 * Os_TE_764722 Os_TE_764722 Chr10 22213778 22213777 - SZ-55_LTR 10318 0.0304 (82/2697) 0 * Os_TE_764723 Os_TE_764703 Chr10 22210031 22210289 + ORSgTEMT01601934 207 0.7905 (1668/2110) 1 Intact * Os_TE_764684 Chr10 22204492 22204493 + COPI2_LTR 4733 0.0003 (1/2992) 0 * * Os_TE_764680 Chr10 22200270 22200271 + SC-8_LTR 4951 0.0003 (1/2990) 0 * Os_TE_764679 Os_TE_764679 Chr10 22200266 22200265 - SC-8_LTR 4951 0.0003 (1/2990) 0 * Os_TE_764680 Os_TE_764669 Chr10 22195760 22195759 + MERMITEB 1610 0.0013 (4/2990) 0 * * Os_TE_764644 Chr10 22188933 22188934 + NDNA1TNA_OS 334 0.0017 (5/2991) 0 * Os_TE_764643 Os_TE_764643 Chr10 22188931 22188930 - NDNA1TNA_OS 334 0.0017 (5/2993) 0 * Os_TE_764644 Os_TE_764632 Chr10 22183515 22183516 - COPIA2-LTR_OS 6433 0.0010 (3/2929) 0 * * Os_TE_764627 Chr10 22180691 22180690 + MPING 430 0.0186 (54/2896) 0 * * Os_TE_764618 Chr10 22178608 22178607 + TRUNCATOR 2918 0.4695 (1400/2982) 0 * Os_TE_764617 Os_TE_764617 Chr10 22178607 22178608 - TRUNCATOR 2918 0.4661 (1387/2976) 0 * Os_TE_764618 Os_TE_764614 Chr10 22178276 22178038 + ORSgTEMT01602029 239 0.5359 (1591/2969) 1 Intact Os_TE_764613 Os_TE_764613 Chr10 22178038 22178276 + ORSgTEMT01601934 207 0.5375 (1591/2960) 1 Intact Os_TE_764614 Os_TE_764605 Chr10 22174198 22174199 + COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_764604 Os_TE_764604 Chr10 22174194 22174193 - COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_764605 Os_TE_764602 Chr10 22172918 22172919 + RIREX_LTR 8828 0.0003 (1/2916) 0 * * Os_TE_764528 Chr10 22145431 22145430 - COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * * Os_TE_764517 Chr10 22143431 22143691 - INDITTO 263 0.4861 (1433/2948) 1 Intact * Os_TE_764514 Chr10 22143253 22143254 - ORSiTERTOOT00074 4935 0.0003 (1/2878) 0 * Os_TE_764513 Os_TE_764513 Chr10 22143249 22143248 + ORSiTERTOOT00074 4935 0.0003 (1/2862) 0 * Os_TE_764514 Os_TE_764508 Chr10 22142616 22142617 + MPING 430 0.0003 (1/2988) 0 * Os_TE_764507 Os_TE_764507 Chr10 22142614 22142613 - MPING 430 0.0003 (1/2993) 0 * Os_TE_764508 Os_TE_764506 Chr10 22142472 22142473 - MPING 430 0.0037 (11/2992) 0 * Os_TE_764505 Os_TE_764505 Chr10 22142470 22142469 + MPING 430 0.0037 (11/2996) 0 * Os_TE_764506 Os_TE_764486 Chr10 22128870 22128871 - SC-8_LTR 4951 0.0003 (1/2997) 0 * Os_TE_764485 Os_TE_764485 Chr10 22128866 22128865 + SC-8_LTR 4951 0.0003 (1/2996) 0 * Os_TE_764486 Os_TE_764464 Chr10 22119501 22119502 + SEVERIN-2 1952 0.0017 (5/2998) 0 * * Os_TE_764445 Chr10 22110687 22110688 - COPIA2-LTR_OS 6433 0.0003 (1/2967) 0 * * Os_TE_764419 Chr10 22094357 22094358 - SZ-22_LTR 4403 0.0017 (5/2993) 0 * Os_TE_764418 Os_TE_764418 Chr10 22094353 22094352 + ORSiTERTOOT00226 792 0.0017 (5/2993) 0 * Os_TE_764419 Os_TE_764413 Chr10 22093455 22093454 - STOWAWAY51_OS 246 0.0003 (1/2979) 0 * Os_TE_764412 Os_TE_764412 Chr10 22093449 22093450 + STOWAWAY51_OS 246 0.0003 (1/2971) 0 * Os_TE_764413 Os_TE_764404 Chr10 22087982 22087983 + SC-8_LTR 4951 0.0017 (5/2998) 0 * Os_TE_764403 Os_TE_764403 Chr10 22087978 22087977 - SC-8_LTR 4951 0.0017 (5/2995) 0 * Os_TE_764404 Os_TE_764390 Chr10 22079687 22079686 + ORSgTEMT01601591 242 0.0010 (3/2998) 0 * Os_TE_764389 Os_TE_764389 Chr10 22079684 22079685 - STOWAWAY51_OS 246 0.0010 (3/2995) 0 * Os_TE_764390 Os_TE_764377 Chr10 22077662 22077663 - RIREX_LTR 8828 0.0003 (1/2968) 0 * Os_TE_764376 Os_TE_764376 Chr10 22077658 22077657 + RIREX_LTR 8828 0.0003 (1/2961) 0 * Os_TE_764377 Os_TE_764369 Chr10 22077181 22077180 + OSTE21 1271 0.0320 (94/2940) 0 * * Os_TE_764361 Chr10 22074819 22074818 - MPING 430 0.0003 (1/2986) 0 * * Os_TE_764346 Chr10 22072455 22072456 - HARB-1_OS 5166 0.0003 (1/2968) 0 * Os_TE_764345 Os_TE_764345 Chr10 22072453 22072452 + HARB-1_OS 5166 0.0003 (1/2967) 0 * Os_TE_764346 Os_TE_764341 Chr10 22070348 22070347 + COPI2_LTR 4733 0.0003 (1/2988) 0 * * Os_TE_764319 Chr10 22059323 22059322 - CPSC2_LTR 5202 0.0003 (1/2991) 0 * * Os_TE_764318 Chr10 22054818 22054817 + ORSgTEMT01601122 212 0.0013 (4/2994) 0 * Os_TE_764317 Os_TE_764317 Chr10 22054817 22054818 - STOWAWAY21_OS 243 0.0013 (4/2993) 0 * Os_TE_764318 Os_TE_764316 Chr10 22054579 22054580 - TYPEM 227 0.0037 (11/2997) 0 * Os_TE_764315 Os_TE_764315 Chr10 22054578 22054577 - ORSgTEMT02400179 221 0.0033 (10/2996) 0 * Os_TE_764316 Os_TE_764302 Chr10 22049664 22049665 + Cassandra_OS-LTR 764 0.0003 (1/2949) 0 * * Os_TE_764291 Chr10 22044829 22044828 - ORSgTEMT00900099 250 0.0017 (5/2945) 0 * Os_TE_764290 Os_TE_764290 Chr10 22044825 22044826 - ORSgTEMT00900563 246 0.0017 (5/2951) 0 * Os_TE_764291 Os_TE_764258 Chr10 22020056 22020057 - COPIA2-LTR_OS 6433 0.0017 (5/2994) 0 * Os_TE_764257 Os_TE_764257 Chr10 22020052 22020051 + COPIA2-LTR_OS 6433 0.0013 (4/2999) 0 * Os_TE_764258 Os_TE_764224 Chr10 22003492 22003491 - COPIA2-LTR_OS 6433 0.0017 (5/2946) 0 * * Os_TE_764202 Chr10 21998729 21998730 + COPIA2-LTR_OS 6433 0.0013 (4/2986) 0 * Os_TE_764201 Os_TE_764201 Chr10 21998725 21998724 - COPIA2-LTR_OS 6433 0.0013 (4/2987) 0 * Os_TE_764202 Os_TE_764193 Chr10 21993986 21993987 + COPI1_LTR 4721 0.0017 (5/2976) 0 * Os_TE_764192 Os_TE_764192 Chr10 21993982 21993981 - COPI1_LTR 4721 0.0017 (5/2980) 0 * Os_TE_764193 Os_TE_764178 Chr10 21988296 21988297 - SC-3_LTR 5748 0.0004 (1/2836) 0 * * Os_TE_764155 Chr10 21978475 21978476 - SZ-35LTR 3853 0.2584 (767/2968) 0 * Os_TE_764154 Os_TE_764154 Chr10 21978471 21978470 + RETROSAT4_LTR 13504 0.1034 (259/2505) 0 * Os_TE_764155 Os_TE_764137 Chr10 21973123 21973124 + COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_764136 Os_TE_764136 Chr10 21973119 21973118 - COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_764137 Os_TE_764085 Chr10 21947970 21947971 + CASTAWAY-3 314 0.0017 (5/2991) 0 * Os_TE_764084 Os_TE_764084 Chr10 21947968 21947967 - CASTAWAY-3 314 0.0017 (5/2987) 0 * Os_TE_764085 Os_TE_764068 Chr10 21932735 21932736 - INDITTO 263 0.0003 (1/2974) 0 * Os_TE_764067 Os_TE_764067 Chr10 21932733 21932732 + INDITTO 263 0.0003 (1/2977) 0 * Os_TE_764068 Os_TE_764026 Chr10 21923714 21923715 + INDITTO 263 0.0013 (4/2995) 0 * Os_TE_764025 Os_TE_764025 Chr10 21923712 21923711 - INDITTO 263 0.0013 (4/2982) 0 * Os_TE_764026 Os_TE_764024 Chr10 21921895 21917177 + ORSiTERTOOT00277 4619 0.6455 (1932/2993) 1 Intact Os_TE_764021 Os_TE_764021 Chr10 21917177 21921882 - RETROFIT6_LTR 4799 0.6444 (1928/2992) 1 Intact Os_TE_764024 Os_TE_763994 Chr10 21902871 21902872 + TELIA 141 0.0007 (2/2995) 0 * Os_TE_763993 Os_TE_763993 Chr10 21902863 21902862 - TELIA 141 0.0007 (2/2994) 0 * Os_TE_763994 Os_TE_763979 Chr10 21893640 21893641 + SC-8_LTR 4951 0.0053 (16/2994) 0 * Os_TE_763978 Os_TE_763978 Chr10 21893636 21893635 - SC-8_LTR 4951 0.0053 (16/2994) 0 * Os_TE_763979 Os_TE_763926 Chr10 21866640 21866639 + ORSgTEMT01601591 242 0.0003 (1/2904) 0 * * Os_TE_763916 Chr10 21864269 21864268 + ORSgTEMT01601983 238 0.0032 (7/2155) 0 * * Os_TE_763908 Chr10 21861189 21861188 + STOWAWAY51_OS 246 0.0007 (2/2990) 0 * Os_TE_763907 Os_TE_763907 Chr10 21861183 21861184 - STOWAWAY51_OS 246 0.0007 (2/2987) 0 * Os_TE_763908 Os_TE_763903 Chr10 21858355 21858356 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * * Os_TE_763899 Chr10 21855736 21855737 + COPI2_LTR 4733 0.0057 (17/2996) 0 * Os_TE_763898 Os_TE_763898 Chr10 21855732 21855731 - COPI2_LTR 4733 0.0053 (16/2993) 0 * Os_TE_763899 Os_TE_763886 Chr10 21853625 21853626 - AMYLTP 383 0.0017 (5/2996) 0 * Os_TE_763885 Os_TE_763885 Chr10 21853617 21853616 + AMYLTP 383 0.0017 (5/2997) 0 * Os_TE_763886 Os_TE_763870 Chr10 21844262 21844263 + COPI2_LTR 4733 0.0007 (2/2992) 0 * Os_TE_763869 Os_TE_763869 Chr10 21844258 21844257 - COPI2_LTR 4733 0.0007 (2/2992) 0 * Os_TE_763870 Os_TE_763865 Chr10 21842785 21842014 + MUDRN1_OS 764 0.6544 (1956/2989) 1 Intact Os_TE_763864 Os_TE_763864 Chr10 21842014 21842785 - MUDRN1_OS 764 0.6527 (1945/2980) 1 Intact Os_TE_763865 Os_TE_763828 Chr10 21831083 21831084 + STOWAWAY51_OS 246 0.0003 (1/2995) 0 * * Os_TE_763826 Chr10 21829456 21829457 - COPI2_LTR 4733 0.0003 (1/2990) 0 * Os_TE_763825 Os_TE_763825 Chr10 21829452 21829451 + COPI2_LTR 4733 0.0003 (1/2992) 0 * Os_TE_763826 Os_TE_763823 Chr10 21829030 21829031 + MPING 430 0.0003 (1/2993) 0 * Os_TE_763822 Os_TE_763822 Chr10 21829028 21829027 - MPING 430 0.0003 (1/2997) 0 * Os_TE_763823 Os_TE_763821 Chr10 21829006 21829007 + COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_763820 Os_TE_763820 Chr10 21829002 21829001 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_763821 Os_TE_763819 Chr10 21828926 21828927 - INDITTO 263 0.0003 (1/2998) 0 * Os_TE_763818 Os_TE_763818 Chr10 21828924 21828923 + INDITTO 263 0.0003 (1/2997) 0 * Os_TE_763819 Os_TE_763795 Chr10 21818705 21818706 + ORSiTERTOOT00004 4000 0.0004 (1/2805) 0 * * Os_TE_763763 Chr10 21801705 21801704 - SC-3_LTR 5748 0.0003 (1/2997) 0 * * Os_TE_763739 Chr10 21795919 21795920 - ORSgTEMT00101144 336 0.5884 (1760/2991) 0 * * Os_TE_763726 Chr10 21792887 21793771 + COPIA2-LTR_OS 6433 0.4206 (1260/2996) 1 Solo_LTR * Os_TE_763721 Chr10 21788319 21788320 + ORSiTERTOOT00101 3870 0.0003 (1/2993) 0 * * Os_TE_763710 Chr10 21785112 21785113 - TRUNCATOR2_LTR 2904 0.0003 (1/2896) 0 * * Os_TE_763688 Chr10 21772932 21772933 - AMYLTP 383 0.5886 (1754/2980) 0 * Os_TE_763687 Os_TE_763687 Chr10 21772924 21772923 + AMYLTP 383 0.5834 (1721/2950) 0 * Os_TE_763688 Os_TE_763679 Chr10 21769701 21769700 + STOWAWAY51_OS 246 0.0003 (1/2989) 0 * Os_TE_763678 Os_TE_763678 Chr10 21769695 21769696 - STOWAWAY51_OS 246 0.0003 (1/2944) 0 * Os_TE_763679 Os_TE_763673 Chr10 21765561 21765560 + TNR11 811 0.0013 (4/2983) 0 * Os_TE_763672 Os_TE_763672 Chr10 21765560 21765561 - STOWAWAY51_OS 246 0.0013 (4/2983) 0 * Os_TE_763673 Os_TE_763664 Chr10 21762330 21762329 - COPI2_LTR 4733 0.0003 (1/2993) 0 * * Os_TE_763661 Chr10 21760245 21760244 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * * Os_TE_763658 Chr10 21756738 21756739 + ORSiTERTOOT00028 8600 0.0003 (1/2970) 0 * * Os_TE_763652 Chr10 21755716 21755717 - RETROSAT4_LTR 13504 0.0007 (2/2982) 0 * Os_TE_763651 Os_TE_763651 Chr10 21755712 21755711 + RETROSAT4_LTR 13504 0.0007 (2/2988) 0 * Os_TE_763652 Os_TE_763648 Chr10 21752832 21752833 - GYPSY-A_LTR 8951 0.0003 (1/2991) 0 * Os_TE_763647 Os_TE_763647 Chr10 21752828 21752827 + SZ-40LTR 2465 0.0003 (1/2988) 0 * Os_TE_763648 Os_TE_763646 Chr10 21751726 21751727 - SC-8_LTR 4951 0.0003 (1/2984) 0 * Os_TE_763645 Os_TE_763645 Chr10 21751722 21751721 + SC-8_LTR 4951 0.0003 (1/2983) 0 * Os_TE_763646 Os_TE_763640 Chr10 21747702 21747701 - STOWAWAY51_OS 246 0.0703 (210/2986) 0 * Os_TE_763639 Os_TE_763639 Chr10 21747696 21747697 + STOWAWAY51_OS 246 0.0702 (210/2992) 0 * Os_TE_763640 Os_TE_763636 Chr10 21746497 21746259 + ORSgTEMT01602181 239 0.3327 (997/2997) 1 Intact Os_TE_763635 Os_TE_763635 Chr10 21746259 21746496 - ORSgTEMT01601432 239 0.3278 (981/2993) 1 Intact Os_TE_763636 Os_TE_763618 Chr10 21736579 21736578 - ORSiTERTOOT00214 738 0.0014 (4/2962) 0 * * Os_TE_763576 Chr10 21716819 21716391 - MPING 430 0.0010 (3/2996) 1 Intact Os_TE_763575 Os_TE_763575 Chr10 21716391 21716819 + MPING 430 0.0010 (3/2997) 1 Intact Os_TE_763576 Os_TE_763519 Chr10 21692591 21692592 + ORSgTETNOOT00908 242 0.0003 (1/2992) 0 * * Os_TE_763511 Chr10 21685059 21689542 + SZ-48LTR 3632 0.3435 (1005/2926) 1 Intact * Os_TE_763503 Chr10 21683447 21683448 + RETROSAT4_LTR 13504 0.0003 (1/2992) 0 * Os_TE_763502 Os_TE_763502 Chr10 21683443 21683442 - RETROSAT4_LTR 13504 0.0003 (1/2985) 0 * Os_TE_763503 Os_TE_763501 Chr10 21683199 21683200 + RETROSAT4_LTR 13504 0.5733 (1693/2953) 0 * Os_TE_763500 Os_TE_763500 Chr10 21683195 21683194 - SZ-35LTR 3853 0.5803 (1727/2976) 0 * Os_TE_763501 Os_TE_763476 Chr10 21673372 21673654 - Cassandra_OS-LTR 764 0.3367 (990/2940) 1 Solo_LTR * Os_TE_763451 Chr10 21665877 21665876 + SZ-48LTR 3632 0.0020 (5/2563) 0 * * Os_TE_763450 Chr10 21665704 21665705 - YIREN 905 0.0017 (5/2917) 0 * * Os_TE_763449 Chr10 21664800 21664801 - RIREX_LTR 8828 0.5719 (1670/2920) 0 * Os_TE_763448 Os_TE_763448 Chr10 21664796 21664795 + RIREX_LTR 8828 0.5845 (1725/2951) 0 * Os_TE_763449 Os_TE_763438 Chr10 21659698 21659699 + RIREX_LTR 8828 0.0010 (3/2945) 0 * Os_TE_763437 Os_TE_763437 Chr10 21659694 21659693 - RIREX_LTR 8828 0.0007 (2/2934) 0 * Os_TE_763438 Os_TE_763422 Chr10 21653907 21653908 + ORSgTEMT01701324 144 0.0003 (1/2992) 0 * * Os_TE_763411 Chr10 21652802 21652803 - ORSgTEMT00600304 361 0.0896 (268/2992) 0 * Os_TE_763410 Os_TE_763410 Chr10 21652799 21652798 - CASTAWAY 364 0.0889 (266/2992) 0 * Os_TE_763411 Os_TE_763392 Chr10 21649318 21649317 - ORSgTEMT00900892 250 0.0003 (1/2997) 0 * * Os_TE_763389 Chr10 21648020 21648021 - SZLTR 1249 0.5892 (1764/2994) 0 * Os_TE_763388 Os_TE_763388 Chr10 21648017 21648016 + RETRO2_LTR 12874 0.5856 (1744/2978) 0 * Os_TE_763389 Os_TE_763370 Chr10 21640435 21640434 + ORSgTETNOOT00908 242 0.0007 (2/2982) 0 * * Os_TE_763367 Chr10 21640005 21640004 + ORSiTERTOOT00402 2660 0.0003 (1/2979) 0 * * Os_TE_763357 Chr10 21634853 21634854 + OSTE18 129 0.0013 (4/2963) 0 * * Os_TE_763348 Chr10 21631524 21631525 - INDITTO 263 0.0013 (4/2999) 0 * Os_TE_763347 Os_TE_763347 Chr10 21631522 21631521 + INDITTO 263 0.0017 (5/2999) 0 * Os_TE_763348 Os_TE_763327 Chr10 21622547 21622548 + RIREX_LTR 8828 0.0004 (1/2246) 0 * * Os_TE_763257 Chr10 21596054 21596055 - COPIA2-LTR_OS 6433 0.0003 (1/2980) 0 * Os_TE_763256 Os_TE_763256 Chr10 21596050 21596049 + COPIA2-LTR_OS 6433 0.0003 (1/2972) 0 * Os_TE_763257 Os_TE_763224 Chr10 21569581 21569582 + SC-8_LTR 4951 0.0003 (1/2972) 0 * * Os_TE_763216 Chr10 21567042 21567041 - BAJIELTR 4500 0.0010 (3/2987) 0 * * Os_TE_763207 Chr10 21564442 21564443 + TELIA 141 0.0003 (1/2977) 0 * * Os_TE_763200 Chr10 21553595 21553594 + ORSgTETNOOT00908 242 0.0003 (1/2994) 0 * * Os_TE_763197 Chr10 21550609 21550610 - RETROSAT4_LTR 13504 0.0013 (4/2991) 0 * Os_TE_763196 Os_TE_763196 Chr10 21550605 21550604 + RETROSAT4_LTR 13504 0.0013 (4/2985) 0 * Os_TE_763197 Os_TE_763189 Chr10 21544433 21544434 + ORSgTEMT00500260 149 0.3394 (1010/2976) 0.83 * * Os_TE_763171 Chr10 21539229 21539228 + RETROSAT4_LTR 13504 0.0023 (7/2989) 0 * * Os_TE_763156 Chr10 21535210 21535211 + COPIA2-LTR_OS 6433 0.0007 (2/2981) 0 * * Os_TE_763143 Chr10 21531190 21527214 + SZ-67LTR 1540 0.3311 (977/2951) 1 Intact Os_TE_763136 Os_TE_763136 Chr10 21527214 21531190 - SZ-67LTR 1540 0.3375 (1004/2975) 1 Intact Os_TE_763143 Os_TE_763135 Chr10 21526503 21526504 - TYPEH 309 0.0010 (3/2997) 0 * Os_TE_763134 Os_TE_763134 Chr10 21526501 21526500 + TYPEH 309 0.0007 (2/2997) 0 * Os_TE_763135 Os_TE_763043 Chr10 21472692 21472693 - RIREX_LTR 8828 0.0003 (1/2914) 0 * Os_TE_763042 Os_TE_763042 Chr10 21472688 21472687 - RIREX_LTR 8828 0.0003 (1/2906) 0 * Os_TE_763043 Os_TE_763037 Chr10 21466036 21466035 - COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * * Os_TE_763035 Chr10 21465805 21465806 - MPING 430 0.0054 (16/2981) 0 * Os_TE_763034 Os_TE_763034 Chr10 21465803 21465802 + MPING 430 0.0054 (16/2983) 0 * Os_TE_763035 Os_TE_763021 Chr10 21458637 21458638 - ORSgTEMT00700002 381 0.0003 (1/2995) 0 * * Os_TE_763017 Chr10 21456836 21456837 - SC-8_LTR 4951 0.0007 (2/2992) 0 * Os_TE_763016 Os_TE_763016 Chr10 21456832 21456831 + SC-8_LTR 4951 0.0007 (2/2993) 0 * Os_TE_763017 Os_TE_763013 Chr10 21454550 21454551 - SC-3_LTR 5748 0.0003 (1/2995) 0 * Os_TE_763012 Os_TE_763012 Chr10 21454546 21454545 + ORSiTERTOOT00296 5553 0.0003 (1/2997) 0 * Os_TE_763013 Os_TE_763011 Chr10 21453639 21453640 - TNR2A 152 0.0017 (5/2990) 0 * * Os_TE_763008 Chr10 21451966 21451967 - STOWAWAY13_OS 251 0.0017 (5/2998) 0 * Os_TE_763007 Os_TE_763007 Chr10 21451965 21451964 - STOWAWAY13_OS 251 0.0017 (5/2996) 0 * Os_TE_763008 Os_TE_762999 Chr10 21444416 21444417 + STOWAWAY18_OS 216 0.0027 (8/2919) 0 * * Os_TE_762996 Chr10 21443441 21443442 - OSTONOR1_LTR 6440 0.0003 (1/2998) 0 * Os_TE_762995 Os_TE_762995 Chr10 21443437 21443436 + OSTONOR1_LTR 6440 0.0003 (1/2998) 0 * Os_TE_762996 Os_TE_762989 Chr10 21438611 21438612 - LINE-7_OS 7090 0.1596 (475/2977) 0 * * Os_TE_762985 Chr10 21435048 21435047 + ORSgTEMT02400014 229 0.4561 (1362/2986) 0 * Os_TE_762984 Os_TE_762984 Chr10 21435044 21435045 - ORSgTEMT02400246 177 0.4572 (1366/2988) 0 * Os_TE_762985 Os_TE_762983 Chr10 21434459 21434460 - TRUNCATOR2_LTR 2904 0.0003 (1/2967) 0 * * Os_TE_762955 Chr10 21427275 21427276 - RIREX_LTR 8828 0.0003 (1/2990) 0 * Os_TE_762954 Os_TE_762954 Chr10 21427271 21427270 + RIREX_LTR 8828 0.0003 (1/2998) 0 * Os_TE_762955 Os_TE_762945 Chr10 21424378 21424379 - COPI2_LTR 4733 0.0003 (1/2982) 0 * * Os_TE_762933 Chr10 21419969 21419968 + COPI2_LTR 4733 0.0003 (1/2994) 0 * * Os_TE_762900 Chr10 21405911 21405912 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_762899 Os_TE_762899 Chr10 21405907 21405906 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_762900 Os_TE_762870 Chr10 21390364 21390365 + SC-8_LTR 4951 0.0003 (1/2994) 0 * Os_TE_762869 Os_TE_762869 Chr10 21390360 21390359 - SC-8_LTR 4951 0.0003 (1/2994) 0 * Os_TE_762870 Os_TE_762772 Chr10 21339939 21339940 - RETRO2_LTR 12874 0.6776 (2020/2981) 0 * Os_TE_762771 Os_TE_762771 Chr10 21339935 21339934 + RETRO2_LTR 12874 0.6539 (1840/2814) 0 * Os_TE_762772 Os_TE_762746 Chr10 21325311 21325312 - SC-3_LTR 5748 0.0003 (1/2992) 0 * Os_TE_762745 Os_TE_762745 Chr10 21325307 21325306 + ORSiTERTOOT00296 5553 0.0003 (1/2993) 0 * Os_TE_762746 Os_TE_762737 Chr10 21317681 21317682 + ORSiTERTOOT00226 792 0.0003 (1/2996) 0 * Os_TE_762736 Os_TE_762736 Chr10 21317677 21317676 + ORSiTERTOOT00226 792 0.0003 (1/2996) 0 * Os_TE_762737 Os_TE_762733 Chr10 21314824 21314825 - SC-3_LTR 5748 0.0130 (39/2998) 0 * Os_TE_762732 Os_TE_762732 Chr10 21314820 21314819 + ORSiTERTOOT00296 5553 0.0133 (40/2997) 0 * Os_TE_762733 Os_TE_762708 Chr10 21304193 21304192 + ORSgTETNOOT00012 241 0.0003 (1/2993) 0 * * Os_TE_762705 Chr10 21295366 21295367 + SC-8_LTR 4951 0.0007 (2/2988) 0 * Os_TE_762704 Os_TE_762704 Chr10 21295362 21295361 - SC-8_LTR 4951 0.0007 (2/2988) 0 * Os_TE_762705 Os_TE_762691 Chr10 21289124 21289125 + INDITTO 263 0.0010 (3/2965) 0 * Os_TE_762690 Os_TE_762690 Chr10 21289122 21289121 - INDITTO 263 0.0007 (2/2964) 0 * Os_TE_762691 Os_TE_762677 Chr10 21279941 21279940 + SZ-67LTR 1540 0.0035 (3/868) 0 * * Os_TE_762668 Chr10 21277401 21277402 + ORSgTEMT00500201 140 0.6044 (1804/2985) 0 * * Os_TE_762646 Chr10 21269619 21269618 - STOWAWAY51_OS 246 0.0003 (1/2983) 0 * * Os_TE_762586 Chr10 21248986 21248987 + DS-RICE2N 613 0.0678 (177/2610) 0 * Os_TE_762585 Os_TE_762585 Chr10 21248979 21248978 - DS-RICE2N 613 0.0618 (169/2734) 0 * Os_TE_762586 Os_TE_762582 Chr10 21248159 21248158 + COPI2_LTR 4733 0.0003 (1/2998) 0 * * Os_TE_762543 Chr10 21234661 21234662 - CLOUD-7 495 0.0010 (3/2945) 0 * * Os_TE_762538 Chr10 21233069 21233070 + ORSiTERTOOT00367 5639 0.0003 (1/2978) 0 * * Os_TE_762485 Chr10 21220561 21220562 + ORSgTETNOOT00908 242 0.0010 (1/985) 0 * * Os_TE_762444 Chr10 21199229 21199230 - RETRO1_LTR 8314 0.0003 (1/2966) 0 * Os_TE_762443 Os_TE_762443 Chr10 21199225 21199224 + RETRO2A_LTR 12895 0.0003 (1/2983) 0 * Os_TE_762444 Os_TE_762441 Chr10 21198549 21198550 + COPI2_LTR 4733 0.0007 (2/2988) 0 * Os_TE_762440 Os_TE_762440 Chr10 21198545 21198544 - COPI2_LTR 4733 0.0007 (2/2993) 0 * Os_TE_762441 Os_TE_762430 Chr10 21197734 21197733 - RETROSAT3_LTR 11537 0.0007 (2/2984) 0 * * Os_TE_762376 Chr10 21185938 21185939 + COPI1_LTR 4721 0.0003 (1/2980) 0 * * Os_TE_762349 Chr10 21177046 21177047 - GYPSY-A_LTR 8951 0.0013 (4/2994) 0 * Os_TE_762348 Os_TE_762348 Chr10 21177042 21177041 + SZ-40LTR 2465 0.0013 (4/2994) 0 * Os_TE_762349 Os_TE_762312 Chr10 21157235 21157234 - MuDR3_OS 8604 0.6768 (1979/2924) 0 * * Os_TE_762286 Chr10 21146246 21146245 + CRM-LTR_OS 7749 0.0740 (221/2985) 0 * * Os_TE_762226 Chr10 21126063 21126064 + ORSgTETNOOT00221 261 0.0003 (1/2973) 0 * Os_TE_762225 Os_TE_762225 Chr10 21126061 21126060 + ORSgTETNOOT02316 263 0.0003 (1/2973) 0 * Os_TE_762226 Os_TE_762223 Chr10 21124911 21124912 + COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_762222 Os_TE_762222 Chr10 21124907 21124906 - COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_762223 Os_TE_762221 Chr10 21124656 21124655 + STOWAWAY21_OS 243 0.2347 (697/2970) 0 * * Os_TE_762212 Chr10 21122909 21118174 + ORSiTERTOOT00020 2547 0.3211 (951/2962) 1 Intact Os_TE_762211 Os_TE_762211 Chr10 21118174 21122909 - OSCOPIA1_LTR 4754 0.3212 (949/2955) 1 Intact Os_TE_762212 Os_TE_762209 Chr10 21117743 21117744 - INDITTO 263 0.0003 (1/2993) 0 * * Os_TE_762208 Chr10 21116797 21116796 - ORSgTEMT00502122 149 0.6882 (2053/2983) 0 * * Os_TE_762150 Chr10 21099533 21099906 + BUHUI 375 0.5789 (1203/2078) 1 Intact * Os_TE_762148 Chr10 21099365 21099366 - TESS 244 0.0010 (3/2975) 0 * * Os_TE_762146 Chr10 21096728 21096727 + TWIFB1 3737 0.0003 (1/2991) 0 * * Os_TE_762140 Chr10 21091375 21091376 + SZ-40LTR 2465 0.0010 (3/2987) 0 * * Os_TE_762124 Chr10 21085158 21085159 + ORSgTETNOOT00032 218 0.5964 (1748/2931) 0 * * Os_TE_762122 Chr10 21080817 21083897 - RETROSAT3_LTR 11537 0.3631 (1053/2900) 1 Solo_LTR * Os_TE_762117 Chr10 21080124 21080123 - SZ-17_LTR 3387 0.0004 (1/2853) 0 * * Os_TE_762110 Chr10 21074790 21074791 - ORSiTETNOOT00134 607 0.0003 (1/2993) 0 * Os_TE_762109 Os_TE_762109 Chr10 21074783 21074782 + TWIF 586 0.0003 (1/2992) 0 * Os_TE_762110 Os_TE_762105 Chr10 21070603 21070604 + RETROSAT3_LTR 11537 0.1179 (146/1238) 0 * Os_TE_762104 Os_TE_762104 Chr10 21070599 21070598 - RETROSAT3_LTR 11537 0.1268 (158/1246) 0 * Os_TE_762105 Os_TE_762100 Chr10 21068914 21068915 - OSTE9 421 0.0923 (112/1214) 0 * Os_TE_762099 Os_TE_762099 Chr10 21068908 21068907 + OSTE9 421 0.0764 (89/1165) 0 * Os_TE_762100 Os_TE_762093 Chr10 21063180 21061802 + OSTE33 1012 0.8551 (1056/1235) 1 Intact * Os_TE_762071 Chr10 21044289 21044290 + MPING 430 0.0040 (12/2990) 0 * * Os_TE_762061 Chr10 21040920 21040921 - COPIA2-LTR_OS 6433 0.0017 (5/2981) 0 * Os_TE_762060 Os_TE_762060 Chr10 21040916 21040915 + COPIA2-LTR_OS 6433 0.0017 (5/2984) 0 * Os_TE_762061 Os_TE_762012 Chr10 21023236 21023235 + SINE1OS 127 0.5705 (1699/2978) 0 * * Os_TE_762002 Chr10 21018672 21018671 + ORSgTEMT01400003 213 0.0010 (3/2990) 0 * * Os_TE_761998 Chr10 21010707 21010708 - RETRO2_LTR 12874 0.5654 (1669/2952) 0 * Os_TE_761997 Os_TE_761997 Chr10 21010703 21010702 + RETRO2A_LTR 12895 0.5714 (1688/2954) 0 * Os_TE_761998 Os_TE_761978 Chr10 21006122 21006123 + COPI2_LTR 4733 0.0003 (1/2979) 0 * Os_TE_761977 Os_TE_761977 Chr10 21006118 21006117 - COPI2_LTR 4733 0.0003 (1/2981) 0 * Os_TE_761978 Os_TE_761966 Chr10 20999407 20999408 + INDITTO 263 0.5773 (1702/2948) 0 * Os_TE_761965 Os_TE_761965 Chr10 20999405 20999404 - INDITTO 263 0.5746 (1694/2948) 0 * Os_TE_761966 Os_TE_761963 Chr10 20999341 20999340 + AMYLTP 383 0.0010 (3/2934) 0 * * Os_TE_761955 Chr10 20998679 20998680 - SZ-62LTR 3649 0.0251 (74/2950) 0 * Os_TE_761954 Os_TE_761954 Chr10 20998675 20998674 + SZ-62LTR 3649 0.0250 (74/2957) 0 * Os_TE_761955 Os_TE_761936 Chr10 20990402 20990403 - COPI2_LTR 4733 0.0003 (1/2934) 0 * * Os_TE_761902 Chr10 20981100 20981101 - ORSgTEMT02900061 318 0.0017 (5/2974) 0 * * Os_TE_761890 Chr10 20973389 20973388 - RETROSAT4_LTR 13504 0.6344 (1834/2891) 0 * * Os_TE_761883 Chr10 20968211 20968210 - RETROSAT3_LTR 11537 0.0010 (3/2913) 0 * * Os_TE_761855 Chr10 20963399 20963400 + ORSgTEMT01601036 240 0.0010 (3/2899) 0 * * Os_TE_761853 Chr10 20962361 20962360 + ORSgTEMT03000021 369 0.0048 (14/2912) 0 * Os_TE_761852 Os_TE_761852 Chr10 20962351 20962352 - TYPEU 362 0.0048 (14/2909) 0 * Os_TE_761853 Os_TE_761813 Chr10 20927723 20927724 + HARB-1_OS 5166 0.0007 (2/2849) 0 * Os_TE_761812 Os_TE_761812 Chr10 20927721 20927720 - HARB-1_OS 5166 0.0007 (2/2848) 0 * Os_TE_761813 Os_TE_761810 Chr10 20926961 20926960 - ORSgTEMT01700317 132 0.0003 (1/2985) 0 * * Os_TE_761803 Chr10 20922528 20922529 + NDNA1TNA_OS 334 0.0012 (3/2551) 0 * * Os_TE_761794 Chr10 20921494 20921493 - COPI2_LTR 4733 0.0306 (89/2904) 0 * * Os_TE_761787 Chr10 20918190 20918191 - MPING 430 0.0044 (13/2988) 0 * Os_TE_761786 Os_TE_761786 Chr10 20918188 20918187 + MPING 430 0.0044 (13/2984) 0 * Os_TE_761787 Os_TE_761780 Chr10 20912882 20912804 - ORSgTEMT01700639 106 0.7682 (1402/1825) 1 Intact * Os_TE_761756 Chr10 20908368 20908369 + RETRO2_LTR 12874 0.6164 (1830/2969) 0 * Os_TE_761755 Os_TE_761755 Chr10 20908364 20908363 - RETRO2_LTR 12874 0.6175 (1831/2965) 0 * Os_TE_761756 Os_TE_761747 Chr10 20903894 20903895 - COPIA2-LTR_OS 6433 0.0007 (2/2997) 0 * Os_TE_761746 Os_TE_761746 Chr10 20903890 20903889 + COPIA2-LTR_OS 6433 0.0007 (2/2995) 0 * Os_TE_761747 Os_TE_761736 Chr10 20897951 20897950 - MIDWAY 985 0.0010 (3/2989) 0 * * Os_TE_761713 Chr10 20890084 20890085 - ORSgTEMT00101339 336 0.0007 (2/2759) 0 * Os_TE_761712 Os_TE_761712 Chr10 20890077 20890076 + OLO24C 356 0.0007 (2/2976) 0 * Os_TE_761713 Os_TE_761711 Chr10 20890076 20890077 - ORSgTEMT00100986 341 0.0012 (3/2555) 0 * * Os_TE_761710 Chr10 20890057 20890058 + AMYLTP 383 0.5781 (1721/2977) 0 * * Os_TE_761709 Chr10 20890052 20890051 - MPING 430 0.0003 (1/2976) 0 * * Os_TE_761707 Chr10 20889963 20889962 - ORSgTEMT00900099 250 0.0010 (3/2978) 0 * * Os_TE_761683 Chr10 20881667 20881668 - DNAUN1_OS 408 0.0003 (1/2994) 0 * * Os_TE_761678 Chr10 20879153 20879154 - RETROSAT3_LTR 11537 0.0184 (55/2994) 0 * * Os_TE_761667 Chr10 20875630 20875631 - RIREX_LTR 8828 0.0010 (3/2981) 0 * * Os_TE_761665 Chr10 20874449 20874450 + MERMITEB 1610 0.0010 (3/2988) 0 * * Os_TE_761658 Chr10 20873482 20873483 + ORSgTEMT00900230 250 0.0007 (2/2996) 0 * * Os_TE_761650 Chr10 20870319 20870320 - OsSN3 183 0.0010 (3/2989) 0 * * Os_TE_761633 Chr10 20865228 20865227 + STOWAWAY51_OS 246 0.0007 (2/2960) 0 * Os_TE_761632 Os_TE_761632 Chr10 20865222 20865223 + ORSgTEMT01601591 242 0.0007 (2/2960) 0 * Os_TE_761633 Os_TE_761629 Chr10 20864959 20864958 + STOWAWAY51_OS 246 0.0020 (6/2963) 0 * Os_TE_761628 Os_TE_761628 Chr10 20864953 20864954 - STOWAWAY51_OS 246 0.0020 (6/2960) 0 * Os_TE_761629 Os_TE_761617 Chr10 20862005 20862006 - SZ-67LTR 1540 0.0030 (9/2989) 0 * Os_TE_761616 Os_TE_761616 Chr10 20862001 20862000 + SZ-67LTR 1540 0.0027 (8/2984) 0 * Os_TE_761617 Os_TE_761615 Chr10 20861798 20861799 - SZ-35LTR 3853 0.0027 (8/2987) 0 * Os_TE_761614 Os_TE_761614 Chr10 20861794 20861793 + RETROSAT4_LTR 13504 0.0027 (8/2991) 0 * Os_TE_761615 Os_TE_761526 Chr10 20824399 20824400 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_761525 Os_TE_761525 Chr10 20824395 20824394 + COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_761526 Os_TE_761516 Chr10 20821929 20821930 + MERMITEA 1710 0.0003 (1/2932) 0 * Os_TE_761515 Os_TE_761515 Chr10 20821921 20821920 + MERMITEA 1710 0.0003 (1/2923) 0 * Os_TE_761516 Os_TE_761500 Chr10 20810879 20810880 + AMYLTP 383 0.0010 (3/2963) 0 * Os_TE_761499 Os_TE_761499 Chr10 20810871 20810870 - AMYLTP 383 0.0008 (1/1221) 0 * Os_TE_761500 Os_TE_761497 Chr10 20810325 20810326 + RETRO2_LTR 12874 0.0010 (3/2979) 0 * Os_TE_761496 Os_TE_761496 Chr10 20810321 20810320 - RETRO2_LTR 12874 0.0010 (3/2978) 0 * Os_TE_761497 Os_TE_761465 Chr10 20799737 20799736 - RETROSAT2LTRA 3112 0.0003 (1/2997) 0 * * Os_TE_761450 Chr10 20783626 20783627 + TWIFB1 3737 0.0042 (12/2828) 0 * * Os_TE_761425 Chr10 20767106 20767107 + JOUZHENA 607 0.0017 (5/2980) 0 * Os_TE_761424 Os_TE_761424 Chr10 20767099 20767098 - JOUZHENA 607 0.0013 (4/2983) 0 * Os_TE_761425 Os_TE_761387 Chr10 20755565 20755328 + Cassandra_OS-LTR 764 0.3426 (860/2510) 1 Solo_LTR Os_TE_761384 Os_TE_761384 Chr10 20755331 20755565 - Cassandra_OS-LTR 764 0.3387 (948/2799) 1 Solo_LTR Os_TE_761387 Os_TE_761374 Chr10 20747136 20747137 + COPIA2-LTR_OS 6433 0.0007 (2/2995) 0 * Os_TE_761373 Os_TE_761373 Chr10 20747132 20747131 - COPIA2-LTR_OS 6433 0.0007 (2/2994) 0 * Os_TE_761374 Os_TE_761346 Chr10 20736792 20736793 + NDNA1TNA_OS 334 0.0010 (3/2995) 0 * Os_TE_761345 Os_TE_761345 Chr10 20736790 20736789 - NDNA1TNA_OS 334 0.0010 (3/2996) 0 * Os_TE_761346 Os_TE_761326 Chr10 20724447 20724446 - RETRO2_LTR 12874 0.0013 (4/2997) 0 * * Os_TE_761321 Chr10 20723893 20723892 + RETROSAT4_LTR 13504 0.0424 (124/2925) 0 * * Os_TE_761295 Chr10 20714340 20714341 + ORSgTETNOOT00908 242 0.6766 (1998/2953) 0 * Os_TE_761294 Os_TE_761294 Chr10 20714334 20714333 + ORSgTETNOOT01219 231 0.6777 (2008/2963) 0 * Os_TE_761295 Os_TE_761293 Chr10 20713361 20713362 + COPIA2-LTR_OS 6433 0.0017 (5/2995) 0 * Os_TE_761292 Os_TE_761292 Chr10 20713357 20713356 - COPIA2-LTR_OS 6433 0.0017 (5/2995) 0 * Os_TE_761293 Os_TE_761288 Chr10 20709324 20709325 - COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_761287 Os_TE_761287 Chr10 20709320 20709319 + COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * Os_TE_761288 Os_TE_761286 Chr10 20709128 20709127 - SEVERIN-2 1952 0.6784 (1987/2929) 0 * * Os_TE_761209 Chr10 20680330 20680329 + RIREX_LTR 8828 0.0007 (2/2981) 0 * * Os_TE_761202 Chr10 20677473 20677474 + COPIA2-LTR_OS 6433 0.0003 (1/2888) 0 * * Os_TE_761169 Chr10 20669803 20669804 - SZ-35LTR 3853 0.6824 (2043/2994) 0 * * Os_TE_761150 Chr10 20664605 20664604 + ORSgTEMT00501601 153 0.0003 (1/2959) 0 * * Os_TE_761132 Chr10 20657950 20657951 + COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_761131 Os_TE_761131 Chr10 20657946 20657945 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_761132 Os_TE_761079 Chr10 20638956 20638957 + SZ-67LTR 1540 0.0013 (4/2992) 0 * Os_TE_761078 Os_TE_761078 Chr10 20638952 20638951 - RETROSAT5_LTR 13878 0.0017 (5/2992) 0 * Os_TE_761079 Os_TE_761057 Chr10 20635734 20635733 - RETROSAT4_LTR 13504 0.6572 (1957/2978) 0 * * Os_TE_761051 Chr10 20631503 20631502 - Cassandra_OS-LTR 764 0.0003 (1/2989) 0 * * Os_TE_761046 Chr10 20630905 20630906 - ORSiTERTOOT00402 2660 0.0003 (1/2989) 0 * Os_TE_761045 Os_TE_761045 Chr10 20630901 20630900 + ORSiTERTOOT00402 2660 0.0003 (1/2964) 0 * Os_TE_761046 Os_TE_761044 Chr10 20630460 20630459 - STOWAWAY51_OS 246 0.0003 (1/2986) 0 * Os_TE_761043 Os_TE_761043 Chr10 20630454 20630455 + STOWAWAY51_OS 246 0.0003 (1/2979) 0 * Os_TE_761044 Os_TE_761041 Chr10 20629007 20629006 - ORSgTEMT01600317 232 0.0017 (5/2994) 0 * * Os_TE_761032 Chr10 20627073 20627072 + STOWAWAY51_OS 246 0.0003 (1/2990) 0 * * Os_TE_761031 Chr10 20626969 20626968 - STOWAWAY51_OS 246 0.0003 (1/2978) 0 * * Os_TE_761016 Chr10 20622472 20622471 + TRUNCATOR 2918 0.0017 (5/2995) 0 * * Os_TE_760963 Chr10 20595998 20595999 - COPIA3-LTR_OS 5061 0.0013 (4/2989) 0 * * Os_TE_760961 Chr10 20595041 20595042 - ORSgTEMT01601834 234 0.0017 (5/2995) 0 * Os_TE_760960 Os_TE_760960 Chr10 20595040 20595039 - ORSgTEMT01601493 303 0.0017 (5/2994) 0 * Os_TE_760961 Os_TE_760959 Chr10 20595016 20595015 - ORSgTEMT00100799 337 0.0003 (1/2993) 0 * Os_TE_760958 Os_TE_760958 Chr10 20595015 20595016 + NDNA1TNA_OS 334 0.0017 (5/2997) 0 * Os_TE_760959 Os_TE_760957 Chr10 20594615 20594616 + WUWU 113 0.0017 (5/2969) 0 * Os_TE_760956 Os_TE_760956 Chr10 20594607 20594606 + WUWU 113 0.0017 (5/2965) 0 * Os_TE_760957 Os_TE_760955 Chr10 20592223 20592222 + RPO_OS 1983 0.0014 (4/2905) 0 * * Os_TE_760954 Chr10 20592041 20592042 + Cassandra_OS-LTR 764 0.7082 (1888/2666) 0 * Os_TE_760953 Os_TE_760953 Chr10 20592037 20592036 - Cassandra_OS-LTR 764 0.6980 (1796/2573) 0 * Os_TE_760954 Os_TE_760945 Chr10 20590729 20590728 + TRUNCATOR 2918 0.0003 (1/2995) 0 * Os_TE_760944 Os_TE_760944 Chr10 20590728 20590729 - TRUNCATOR 2918 0.0003 (1/2993) 0 * Os_TE_760945 Os_TE_760942 Chr10 20589047 20577425 + SZ-48LTR 3632 0.3051 (907/2973) 1 Intact * Os_TE_760915 Chr10 20565120 20565121 + NDNA1TNA_OS 334 0.0003 (1/2983) 0 * Os_TE_760914 Os_TE_760914 Chr10 20565118 20565117 - NDNA1TNA_OS 334 0.0003 (1/2979) 0 * Os_TE_760915 Os_TE_760891 Chr10 20554890 20554889 - ORSgTETNOOT02462 1789 0.7039 (2097/2979) 0 * * Os_TE_760890 Chr10 20553677 20553678 + ORSiTERTOOT00226 792 0.0003 (1/2995) 0 * Os_TE_760889 Os_TE_760889 Chr10 20553673 20553672 - SZ-22_LTR 4403 0.0003 (1/2994) 0 * Os_TE_760890 Os_TE_760885 Chr10 20550873 20550874 + RETROSAT4_LTR 13504 0.1005 (298/2965) 0 * Os_TE_760884 Os_TE_760884 Chr10 20550869 20550868 - SZ-35LTR 3853 0.1082 (322/2977) 0 * Os_TE_760885 Os_TE_760880 Chr10 20550591 20550592 - SZ-48LTR 3632 0.0007 (2/2985) 0 * Os_TE_760879 Os_TE_760879 Chr10 20550587 20550586 + SZ-48LTR 3632 0.0007 (2/2989) 0 * Os_TE_760880 Os_TE_760875 Chr10 20550160 20542064 + SZ-48LTR 3632 0.3093 (916/2962) 1 Intact Os_TE_760871 Os_TE_760871 Chr10 20542064 20550160 - SZ-48LTR 3632 0.2901 (821/2830) 1 Intact Os_TE_760875 Os_TE_760779 Chr10 20499054 20499055 + SEVERIN-2 1952 0.7022 (2084/2968) 0 * Os_TE_760778 Os_TE_760778 Chr10 20499051 20499050 - SEVERIN-2 1952 0.6427 (1619/2519) 0 * Os_TE_760779 Os_TE_760775 Chr10 20496361 20496362 - TREP215 239 0.7107 (2096/2949) 0 * * Os_TE_760774 Chr10 20496341 20496342 - STOWAWAY51_OS 246 0.0007 (2/2982) 0 * * Os_TE_760771 Chr10 20495771 20495450 - ORSgTEMT00100865 348 0.2954 (864/2925) 0.6 Intact Os_TE_760770 Os_TE_760770 Chr10 20495433 20495768 - ORSgTEMT00100800 341 0.3122 (909/2912) 1 Intact Os_TE_760771 Os_TE_760767 Chr10 20495306 20494387 + Cassandra_OS-LTR 764 0.3214 (907/2822) 1 Intact * Os_TE_760760 Chr10 20493351 20493352 - RETROFIT_LTR 4866 0.0003 (1/2946) 0 * Os_TE_760759 Os_TE_760759 Chr10 20493348 20493347 + ORSiTERTOOT00033 4884 0.0003 (1/2872) 0 * Os_TE_760760 Os_TE_760758 Chr10 20493201 20492840 - TYPEU2 382 0.3121 (915/2932) 1 Intact * Os_TE_760755 Chr10 20492725 20492724 + NINIA 896 0.6984 (2061/2951) 0 * * Os_TE_760749 Chr10 20488619 20488620 + ORSgTEMT01400031 216 0.7022 (2099/2989) 0 * * Os_TE_760748 Chr10 20488063 20488062 - ORSgTEMT00501204 149 0.0158 (15/950) 0 * Os_TE_760747 Os_TE_760747 Chr10 20488061 20488062 + ORSgTEMT00501204 149 0.6854 (1967/2870) 0 * Os_TE_760748 Os_TE_760746 Chr10 20487885 20486629 - MERMITED 1572 0.3011 (894/2969) 1 Intact * Os_TE_760739 Chr10 20448904 20448647 + DITAILA 257 0.3068 (918/2992) 1 Intact * Os_TE_760712 Chr10 20436282 20436281 + WUWU 113 0.7023 (2102/2993) 0 * * Os_TE_760683 Chr10 20421230 20421231 - SZ-9LTR 965 0.7053 (2085/2956) 0 * * Os_TE_760676 Chr10 20419422 20419421 - COWARD 200 0.0010 (3/2978) 0 * * Os_TE_760626 Chr10 20408668 20408669 - SZ-35LTR 3853 0.7039 (2104/2989) 0 * Os_TE_760625 Os_TE_760625 Chr10 20408664 20408663 + RETROSAT4_LTR 13504 0.6994 (2078/2971) 0 * Os_TE_760626 Os_TE_760623 Chr10 20408373 20408374 + RETROSAT4_LTR 13504 0.0017 (5/2992) 0 * Os_TE_760622 Os_TE_760622 Chr10 20408369 20408368 - SZ-35LTR 3853 0.0017 (5/2988) 0 * Os_TE_760623 Os_TE_760603 Chr10 20404244 20404243 - ORSgTETN00200001 10994 0.6770 (1874/2768) 0 * * Os_TE_760580 Chr10 20399946 20399945 - HELITRON7_OS 10153 0.0010 (3/2876) 0 * Os_TE_760579 Os_TE_760579 Chr10 20399942 20399943 + HELITRON7_OS 10153 0.0010 (3/2925) 0 * Os_TE_760580 Os_TE_760577 Chr10 20399355 20399356 - ORSgTEMT01700299 212 0.0010 (3/2991) 0 * * Os_TE_760575 Chr10 20397475 20397476 - COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_760574 Os_TE_760574 Chr10 20397471 20397470 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_760575 Os_TE_760567 Chr10 20394647 20394648 + RETRO2_LTR 12874 0.0007 (2/2999) 0 * Os_TE_760566 Os_TE_760566 Chr10 20394643 20394642 - RETRO2_LTR 12874 0.0007 (2/2996) 0 * Os_TE_760567 Os_TE_760550 Chr10 20376380 20376381 + RETROSAT4_LTR 13504 0.7308 (2158/2953) 0 * Os_TE_760549 Os_TE_760549 Chr10 20376376 20376375 - RETROSAT4_LTR 13504 0.7316 (2178/2977) 0 * Os_TE_760550 Os_TE_760544 Chr10 20374105 20374106 - MPING 430 0.0057 (17/2993) 0 * Os_TE_760543 Os_TE_760543 Chr10 20374103 20374102 + MPING 430 0.0057 (17/2995) 0 * Os_TE_760544 Os_TE_760542 Chr10 20373954 20373955 - MPING 430 0.0007 (2/2987) 0 * Os_TE_760541 Os_TE_760541 Chr10 20373952 20373951 + MPING 430 0.0007 (2/2991) 0 * Os_TE_760542 Os_TE_760531 Chr10 20371136 20371137 + RETROSAT4_LTR 13504 0.0565 (167/2955) 0 * Os_TE_760530 Os_TE_760530 Chr10 20371132 20371131 - SZ-35LTR 3853 0.0592 (175/2954) 0 * Os_TE_760531 Os_TE_760526 Chr10 20368522 20368523 + NDNA1TNA_OS 334 0.0017 (5/2968) 0 * Os_TE_760525 Os_TE_760525 Chr10 20368520 20368519 - NDNA1TNA_OS 334 0.0017 (5/2955) 0 * Os_TE_760526 Os_TE_760520 Chr10 20360958 20360959 - CENTRE 280 0.0010 (3/2986) 0 * * Os_TE_760511 Chr10 20353095 20353096 - MPING 430 0.0003 (1/2991) 0 * Os_TE_760510 Os_TE_760510 Chr10 20353093 20353092 + MPING 430 0.0003 (1/2993) 0 * Os_TE_760511 Os_TE_760509 Chr10 20352731 20352732 + OSTE28 298 0.0010 (3/2882) 0 * * Os_TE_760504 Chr10 20350290 20350289 - STOWAWAY51_OS 246 0.0007 (2/2987) 0 * * Os_TE_760500 Chr10 20349843 20349844 + OSTE33 1012 0.0013 (4/2979) 0 * Os_TE_760499 Os_TE_760499 Chr10 20349834 20349833 - OSTE33 1012 0.0013 (4/2996) 0 * Os_TE_760500 Os_TE_760494 Chr10 20345235 20345234 + COPI2_LTR 4733 0.0003 (1/2994) 0 * * Os_TE_760493 Chr10 20344692 20344691 - ORSgTEMT00901723 248 0.0017 (5/2942) 0 * Os_TE_760492 Os_TE_760492 Chr10 20344684 20344685 + ORSgTEMT00900471 260 0.0017 (5/2957) 0 * Os_TE_760493 Os_TE_760474 Chr10 20339948 20339947 - MUDRN1_OS 764 0.7520 (2205/2932) 0 * * Os_TE_760424 Chr10 20329130 20329131 + ORSgTEMT00502544 146 0.0013 (4/2989) 0 * Os_TE_760423 Os_TE_760423 Chr10 20329129 20329128 - ORSgTEMT00502544 146 0.0013 (4/2989) 0 * Os_TE_760424 Os_TE_760418 Chr10 20327724 20327723 - STOWAWAY1_OS 149 0.7477 (2220/2969) 0 * * Os_TE_760406 Chr10 20325391 20325390 - TRUNCATOR 2918 0.0096 (24/2513) 0 * * Os_TE_760399 Chr10 20316555 20316556 + ORSgTETN00200005 1121 0.0017 (5/2974) 0 * * Os_TE_760390 Chr10 20314635 20313483 + SZ-30_LTR 6377 0.2584 (773/2991) 1 Solo_LTR * Os_TE_760382 Chr10 20311978 20311732 + ORSgTEMT01601122 212 0.8634 (765/886) 1 Intact Os_TE_760378 Os_TE_760378 Chr10 20311732 20311932 + ORSgTEMT01601122 212 0.2602 (769/2955) 1 Intact Os_TE_760382 Os_TE_760375 Chr10 20310942 20310941 + SEVERIN-2 1952 0.7210 (2106/2921) 0 * * Os_TE_760370 Chr10 20309063 20309164 - TREP219 104 0.2615 (773/2956) 1 Intact * Os_TE_760364 Chr10 20305213 20305214 - ORSgTEMT01600559 234 0.7461 (2216/2970) 0 * * Os_TE_760361 Chr10 20304988 20304989 - ORSgTEMT01601696 238 0.7206 (1988/2759) 0 * * Os_TE_760360 Chr10 20304916 20304917 + AMYLTP 383 0.2732 (727/2661) 0 * Os_TE_760359 Os_TE_760359 Chr10 20304908 20304907 - AMYLTP 383 0.2700 (617/2285) 0 * Os_TE_760360 Os_TE_760349 Chr10 20300530 20300320 + TYPEM 227 0.2640 (784/2970) 1 Intact * Os_TE_760339 Chr10 20295068 20294913 - TNR2 157 0.2602 (775/2978) 1 Intact Os_TE_760338 Os_TE_760338 Chr10 20294913 20295068 + TNR2 157 0.2642 (779/2949) 1 Intact Os_TE_760339 Os_TE_760330 Chr10 20292766 20292767 - TYPEH 309 0.0004 (1/2507) 0 * * Os_TE_760322 Chr10 20290443 20290444 - ORSgTEMT01701676 156 0.7497 (2234/2980) 0 * * Os_TE_760314 Chr10 20287223 20287224 + ORSgTEMT01601122 212 0.0014 (4/2948) 0 * * Os_TE_760310 Chr10 20286866 20286681 + SNAP-OL3 189 0.2602 (776/2982) 1 Intact Os_TE_760309 Os_TE_760309 Chr10 20286681 20286864 - SNAP-OL3 189 0.2654 (782/2946) 1 Intact Os_TE_760310 Os_TE_760304 Chr10 20280900 20280899 - ORSgTEMT00900099 250 0.7497 (2243/2992) 0 * Os_TE_760303 Os_TE_760303 Chr10 20280896 20280897 + ORSgTEMT00901844 250 0.7458 (2218/2974) 0 * Os_TE_760304 Os_TE_760301 Chr10 20280454 20280313 + ORSgTEMT00501786 149 0.3841 (805/2096) 1 Intact Os_TE_760300 Os_TE_760300 Chr10 20280312 20280450 + ORSgTEMT00502544 146 0.3895 (797/2046) 1 Intact Os_TE_760301 Os_TE_760299 Chr10 20280090 20280091 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_760298 Os_TE_760298 Chr10 20280086 20280085 - COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_760299 Os_TE_760296 Chr10 20279167 20279168 + COPIA2-LTR_OS 6433 0.0003 (1/2962) 0 * Os_TE_760295 Os_TE_760295 Chr10 20279163 20279162 - COPIA2-LTR_OS 6433 0.0003 (1/2984) 0 * Os_TE_760296 Os_TE_760293 Chr10 20277809 20277810 + COPIA2-LTR_OS 6433 0.0010 (3/2993) 0 * Os_TE_760292 Os_TE_760292 Chr10 20277805 20277804 - COPIA2-LTR_OS 6433 0.0010 (3/2992) 0 * Os_TE_760293 Os_TE_760276 Chr10 20274016 20274015 - ORSgTEMT01700741 196 0.0003 (1/2992) 0 * * Os_TE_760275 Chr10 20273956 20273955 - ORSgTEMT00901408 244 0.0007 (2/2995) 0 * Os_TE_760274 Os_TE_760274 Chr10 20273952 20273953 + ORSgTEMT00900897 248 0.0007 (2/2994) 0 * Os_TE_760275 Os_TE_760268 Chr10 20271386 20271387 + STOWAWAY9_OS 235 0.0003 (1/2982) 0 * * Os_TE_760257 Chr10 20267856 20267857 - ORSgTEMT01400022 212 0.0003 (1/2993) 0 * * Os_TE_760253 Chr10 20264745 20264744 - ORSgTEMT01601696 238 0.0010 (3/2922) 0 * * Os_TE_760250 Chr10 20262916 20262915 + NDNA1TNA_OS 334 0.0003 (1/2985) 0 * * Os_TE_760244 Chr10 20262220 20262219 + STOWAWAY51_OS 246 0.0003 (1/2996) 0 * Os_TE_760243 Os_TE_760243 Chr10 20262214 20262215 - STOWAWAY51_OS 246 0.0003 (1/2995) 0 * Os_TE_760244 Os_TE_760235 Chr10 20256721 20256722 - STOWAWAY44_OS 240 0.0010 (3/2976) 0 * * Os_TE_760223 Chr10 20250224 20250225 - ORSgTERT00201216 11284 0.0007 (2/2963) 0 * * Os_TE_760217 Chr10 20249193 20248973 - ORSgTEMT02400179 221 0.2575 (768/2982) 1 Intact Os_TE_760216 Os_TE_760216 Chr10 20248974 20249192 - TYPEM 227 0.2564 (760/2964) 1 Intact Os_TE_760217 Os_TE_760210 Chr10 20248163 20248164 - TELIA 141 0.0021 (6/2817) 0 * * Os_TE_760175 Chr10 20229715 20229716 + RIREX_LTR 8828 0.0017 (5/2990) 0 * Os_TE_760174 Os_TE_760174 Chr10 20229711 20229710 - RIREX_LTR 8828 0.0013 (4/2988) 0 * Os_TE_760175 Os_TE_760170 Chr10 20228219 20228220 - ORSiTERT00200154 9386 0.1898 (561/2955) 0 * Os_TE_760169 Os_TE_760169 Chr10 20228213 20228212 + TRUNCATOR 2918 0.1947 (579/2974) 0 * Os_TE_760170 Os_TE_760159 Chr10 20224099 20224098 - TYPEM 227 0.0010 (3/2998) 0 * * Os_TE_760143 Chr10 20219597 20219596 + RETROSAT2LTR 12796 0.0270 (76/2813) 0 * * Os_TE_760130 Chr10 20216219 20215149 - RETRO2_LTR 12874 0.2580 (770/2984) 1 Solo_LTR Os_TE_760129 Os_TE_760129 Chr10 20215150 20216219 + RETRO2_LTR 12874 0.2567 (763/2972) 1 Solo_LTR Os_TE_760130 Os_TE_760124 Chr10 20212697 20212698 + ORSgTEMT00400010 151 0.0018 (3/1656) 0 * * Os_TE_760115 Chr10 20208732 20208731 + ORSgTEMT01601591 242 0.0350 (105/2997) 0 * Os_TE_760114 Os_TE_760114 Chr10 20208726 20208727 + STOWAWAY51_OS 246 0.0347 (104/2996) 0 * Os_TE_760115 Os_TE_760053 Chr10 20183714 20183715 - ORSgTEMT02400179 221 0.0003 (1/2995) 0 * Os_TE_760052 Os_TE_760052 Chr10 20183713 20183712 - TYPEM 227 0.0003 (1/2992) 0 * Os_TE_760053 Os_TE_760032 Chr10 20175038 20175039 + SZ-48LTR 3632 0.0013 (4/2980) 0 * Os_TE_760031 Os_TE_760031 Chr10 20175033 20175032 - SZ-48LTR 3632 0.0017 (5/2981) 0 * Os_TE_760032 Os_TE_760000 Chr10 20163107 20162763 - NDNA2TNA_OS 346 0.4656 (1138/2444) 1 Intact * Os_TE_759992 Chr10 20160515 20160516 + F569 228 0.0007 (2/2980) 0 * Os_TE_759991 Os_TE_759991 Chr10 20160513 20160512 - F569 228 0.0007 (2/2979) 0 * Os_TE_759992 Os_TE_759990 Chr10 20160471 20160472 - COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_759989 Os_TE_759989 Chr10 20160467 20160466 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_759990 Os_TE_759982 Chr10 20153216 20153215 + TRUNCATOR 2918 0.0007 (2/2958) 0 * Os_TE_759981 Os_TE_759981 Chr10 20153215 20153216 - TRUNCATOR 2918 0.0007 (2/2753) 0 * Os_TE_759982 Os_TE_759980 Chr10 20153183 20153184 - SZ-35LTR 3853 0.4643 (1385/2983) 0 * Os_TE_759979 Os_TE_759979 Chr10 20153179 20153178 + RETROSAT4_LTR 13504 0.4467 (1307/2926) 0 * Os_TE_759980 Os_TE_759964 Chr10 20147708 20147709 + RIREX_LTR 8828 0.0007 (2/2949) 0 * Os_TE_759963 Os_TE_759963 Chr10 20147704 20147703 - RIREX_LTR 8828 0.0007 (2/2948) 0 * Os_TE_759964 Os_TE_759958 Chr10 20144892 20144893 - ORSiTETNOOT00216 3569 0.0003 (1/2975) 0 * Os_TE_759957 Os_TE_759957 Chr10 20144885 20144884 + TWIFBIG 3567 0.0003 (1/2968) 0 * Os_TE_759958 Os_TE_759901 Chr10 20114888 20114889 - HELITRON7_OS 10153 0.5706 (1657/2904) 0 * * Os_TE_759893 Chr10 20110061 20110062 - ORSgTETN00200001 10994 0.0003 (1/2990) 0 * Os_TE_759892 Os_TE_759892 Chr10 20110059 20110058 + SPMLIKE 10989 0.0003 (1/2991) 0 * Os_TE_759893 Os_TE_759880 Chr10 20108062 20108063 + ORSgTEMT00501795 147 0.0017 (5/2985) 0 * * Os_TE_759879 Chr10 20107873 20103926 - OSTE33 1012 0.2171 (649/2989) 1 Intact * Os_TE_759858 Chr10 20098466 20098467 + COPIA2-LTR_OS 6433 0.0004 (1/2774) 0 * Os_TE_759857 Os_TE_759857 Chr10 20098462 20098461 - COPIA2-LTR_OS 6433 0.0004 (1/2746) 0 * Os_TE_759858 Os_TE_759855 Chr10 20098018 20098017 + MUDRN5_OS 374 0.0003 (1/2988) 0 * * Os_TE_759846 Chr10 20087102 20087103 - INDITTO 263 0.0588 (155/2634) 0 * Os_TE_759845 Os_TE_759845 Chr10 20087100 20087099 + INDITTO 263 0.0604 (157/2598) 0 * Os_TE_759846 Os_TE_759844 Chr10 20086220 20086221 + MPING 430 0.0023 (7/2999) 0 * Os_TE_759843 Os_TE_759843 Chr10 20086218 20086217 - MPING 430 0.0023 (7/2996) 0 * Os_TE_759844 Os_TE_759842 Chr10 20085746 20085745 + ORSgTEMT01601591 242 0.0010 (3/2985) 0 * Os_TE_759841 Os_TE_759841 Chr10 20085743 20085744 - STOWAWAY51_OS 246 0.0010 (3/2986) 0 * Os_TE_759842 Os_TE_759839 Chr10 20084821 20084822 - NDNA1TNA_OS 334 0.0003 (1/2985) 0 * Os_TE_759838 Os_TE_759838 Chr10 20084819 20084818 + NDNA1TNA_OS 334 0.0007 (2/2984) 0 * Os_TE_759839 Os_TE_759822 Chr10 20081456 20081457 + STOWAWAY44_OS 240 0.0003 (1/2996) 0 * * Os_TE_759819 Chr10 20080708 20080707 - RIREX_LTR 8828 0.0003 (1/2974) 0 * * Os_TE_759772 Chr10 20058499 20058500 - NDNA1TNA_OS 334 0.0003 (1/2998) 0 * Os_TE_759771 Os_TE_759771 Chr10 20058498 20058497 + NDNA1TNA_OS 334 0.0003 (1/2996) 0 * Os_TE_759772 Os_TE_759768 Chr10 20058183 20058182 - RETRO2_LTR 12874 0.6484 (1942/2995) 0 * * Os_TE_759767 Chr10 20056976 20056977 + ORSgTETNOOT01668 244 0.0003 (1/2991) 0 * * Os_TE_759766 Chr10 20055979 20049574 + RIRE5-LTR_OS 6427 0.2108 (595/2823) 1 Intact * Os_TE_759750 Chr10 20046880 20046879 - RETRO2_LTR 12874 0.0003 (1/2997) 0 * * Os_TE_759748 Chr10 20044853 20044854 + ORSiTERTOOT00398 5651 0.0003 (1/2991) 0 * * Os_TE_759721 Chr10 20022470 20022471 - RIREX_LTR 8828 0.0003 (1/2962) 0 * * Os_TE_759706 Chr10 20011176 20011177 + HARB-1_OS 5166 0.0017 (5/2983) 0 * * Os_TE_759700 Chr10 20010028 20009038 - COPIA2-LTR_OS 6433 0.1908 (566/2967) 1 Solo_LTR Os_TE_759698 Os_TE_759698 Chr10 20009038 20010028 + COPIA2-LTR_OS 6433 0.1848 (546/2955) 1 Solo_LTR Os_TE_759700 Os_TE_759686 Chr10 20007746 20007745 - STOWAWAY18_OS 216 0.0017 (5/2989) 0 * Os_TE_759685 Os_TE_759685 Chr10 20007744 20007745 + STOWAWAY18_OS 216 0.0017 (5/2993) 0 * Os_TE_759686 Os_TE_759684 Chr10 20007520 20007521 - ORSgTETNOOT00754 253 0.0003 (1/2951) 0 * Os_TE_759683 Os_TE_759683 Chr10 20007515 20007514 - ORSgTETNOOT00477 252 0.0003 (1/2948) 0 * Os_TE_759684 Os_TE_759604 Chr10 19985836 19985837 - F770 284 0.0003 (1/2996) 0 * Os_TE_759603 Os_TE_759603 Chr10 19985834 19985833 + F770 284 0.0003 (1/2999) 0 * Os_TE_759604 Os_TE_759602 Chr10 19985385 19985386 + SZ-55_LTR 10318 0.0007 (2/2994) 0 * Os_TE_759601 Os_TE_759601 Chr10 19985381 19985380 - SZ-55_LTR 10318 0.0007 (2/2992) 0 * Os_TE_759602 Os_TE_759562 Chr10 19976741 19976742 + RETRO2_LTR 12874 0.2585 (737/2851) 0 * Os_TE_759561 Os_TE_759561 Chr10 19976737 19976736 - RETRO2_LTR 12874 0.1024 (215/2099) 0 * Os_TE_759562 Os_TE_759557 Chr10 19972680 19972681 + ORSgTETNOOT00032 218 0.0013 (4/2975) 0 * * Os_TE_759514 Chr10 19953252 19953253 - SC-8_LTR 4951 0.0027 (8/2986) 0 * Os_TE_759513 Os_TE_759513 Chr10 19953248 19953247 + SC-8_LTR 4951 0.0027 (8/2987) 0 * Os_TE_759514 Os_TE_759512 Chr10 19951937 19951938 + MERMITED 1572 0.0057 (17/2993) 0 * Os_TE_759511 Os_TE_759511 Chr10 19951936 19951935 + MERMITED 1572 0.0060 (18/2993) 0 * Os_TE_759512 Os_TE_759507 Chr10 19947480 19947481 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_759506 Os_TE_759506 Chr10 19947476 19947475 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_759507 Os_TE_759480 Chr10 19942798 19942797 + CACTA-B 1103 0.0007 (2/2995) 0 * Os_TE_759479 Os_TE_759479 Chr10 19942794 19942795 + ORSgTETN00200005 1121 0.0007 (2/2991) 0 * Os_TE_759480 Os_TE_759470 Chr10 19941842 19941841 + ORSiTEMT01000008 242 0.0007 (2/2949) 0 * * Os_TE_759453 Chr10 19936651 19936652 + ORSgTETNOOT00908 242 0.0010 (3/2995) 0 * * Os_TE_759429 Chr10 19922162 19922163 + ORSiTERTOOT00296 5553 0.0003 (1/2995) 0 * Os_TE_759428 Os_TE_759428 Chr10 19922158 19922157 - SC-3_LTR 5748 0.0003 (1/2997) 0 * Os_TE_759429 Os_TE_759418 Chr10 19914187 19914186 + TNR2A 152 0.0003 (1/2987) 0 * * Os_TE_759403 Chr10 19905275 19905276 + COPIA2-LTR_OS 6433 0.0003 (1/3000) 0 * Os_TE_759402 Os_TE_759402 Chr10 19905271 19905270 - COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_759403 Os_TE_759399 Chr10 19901802 19901803 - AMYLTP 383 0.0017 (5/2989) 0 * Os_TE_759398 Os_TE_759398 Chr10 19901794 19901793 + AMYLTP 383 0.0013 (4/2987) 0 * Os_TE_759399 Os_TE_759397 Chr10 19901213 19901214 + OSMU5 4881 0.4830 (1403/2905) 0 * * Os_TE_759387 Chr10 19897320 19897321 - ORSgTEMT01601770 238 0.0004 (1/2582) 0 * * Os_TE_759381 Chr10 19890885 19890884 + F770 284 0.2397 (713/2974) 0 * * Os_TE_759380 Chr10 19889964 19889965 - INDITTO 263 0.0017 (5/2887) 0 * * Os_TE_759362 Chr10 19880288 19880064 - STOWAWAY9_OS 235 0.1892 (561/2965) 0.86 Intact Os_TE_759359 Os_TE_759359 Chr10 19880062 19880285 - ORSgTEMT01400014 209 0.1939 (577/2975) 0.89 Intact Os_TE_759362 Os_TE_759345 Chr10 19876285 19876284 + COPI2_LTR 4733 0.0003 (1/2976) 0 * * Os_TE_759330 Chr10 19868821 19867290 - MERMITE-17 2759 0.1875 (556/2966) 1 Intact Os_TE_759329 Os_TE_759329 Chr10 19867288 19868821 + MERMITE18D 1491 0.1078 (292/2709) 1 Intact Os_TE_759330 Os_TE_759328 Chr10 19867266 19867265 + ORSiTEMT00100001 540 0.0033 (1/307) 0 * * Os_TE_759326 Chr10 19866421 19867088 + TWIFB1 3737 0.1768 (523/2958) 1 Intact * Os_TE_759318 Chr10 19862907 19862908 + ORSgTEMT01602181 239 0.0101 (30/2956) 0 * * Os_TE_759317 Chr10 19862779 19862542 - ORSgTEMT01601432 239 0.1851 (543/2933) 1 Intact Os_TE_759316 Os_TE_759316 Chr10 19862542 19862779 + ORSgTEMT01602181 239 0.1864 (555/2978) 1 Intact Os_TE_759317 Os_TE_759310 Chr10 19860906 19860905 - NDNA2TNA_OS 346 0.7851 (2061/2625) 0 * Os_TE_759309 Os_TE_759309 Chr10 19860889 19860890 + NDNA2TNA_OS 346 0.8138 (2434/2991) 0 * Os_TE_759310 Os_TE_759308 Chr10 19860469 19860468 + STOWAWAY21_OS 243 0.0007 (2/2991) 0 * Os_TE_759307 Os_TE_759307 Chr10 19860468 19860469 + ORSgTEMT01601122 212 0.0007 (2/2990) 0 * Os_TE_759308 Os_TE_759300 Chr10 19855582 19855583 - ORSiTERT00100062 5674 0.0035 (4/1158) 0 * * Os_TE_759297 Chr10 19855484 19855483 - TEMPINDAS 4259 0.0006 (1/1585) 0 * * Os_TE_759293 Chr10 19853554 19851725 + MERMITEB 1610 0.1894 (566/2989) 1 Intact * Os_TE_759283 Chr10 19848963 19848733 + ORSgTEMT01601934 207 0.1876 (556/2963) 1 Intact * Os_TE_759280 Chr10 19847229 19847230 + COPI2_LTR 4733 0.0971 (244/2513) 0 * * Os_TE_759276 Chr10 19846992 19845041 - RPO_OS 1983 0.1970 (562/2853) 1 Intact * Os_TE_759272 Chr10 19844333 19844332 - RIREX_LTR 8828 0.0017 (4/2407) 0 * * Os_TE_759244 Chr10 19835485 19835096 + TYPEU4 402 0.1697 (489/2881) 1 Intact * Os_TE_759242 Chr10 19834978 19834979 + SZ-40LTR 2465 0.0007 (2/2912) 0 * * Os_TE_759232 Chr10 19833918 19833917 + OSTE33 1012 0.8283 (2330/2813) 0 * * Os_TE_759215 Chr10 19825928 19824633 - MERMITE18D 1491 0.1803 (510/2828) 1 Intact Os_TE_759214 Os_TE_759214 Chr10 19824631 19825928 + MERMITE18C 1473 0.1817 (489/2691) 1 Intact Os_TE_759215 Os_TE_759212 Chr10 19823957 19823956 + ORSgTEMT01600102 237 0.8096 (2386/2947) 0 * Os_TE_759211 Os_TE_759211 Chr10 19823955 19823956 + ORSgTEMT01602665 238 0.8100 (2405/2969) 0 * Os_TE_759212 Os_TE_759210 Chr10 19823654 19823653 - ORSgTETNOOT02497 262 0.0083 (5/605) 0 * * Os_TE_759197 Chr10 19812760 19812761 - SZ-22_LTR 4403 0.0017 (1/590) 0 * Os_TE_759196 Os_TE_759196 Chr10 19812756 19812755 + SZ-22_LTR 4403 0.0003 (1/2907) 0 * Os_TE_759197 Os_TE_759192 Chr10 19812125 19812335 - ORSgTEMT01400023 211 0.2004 (583/2909) 1 Intact * Os_TE_759190 Chr10 19810189 19810190 - COWARD 200 0.8152 (2417/2965) 0 * * Os_TE_759189 Chr10 19810047 19808901 + DASIA-2 1198 0.1964 (583/2968) 1 Intact * Os_TE_759180 Chr10 19806939 19806940 - MUDRN4_OS 332 0.7533 (1771/2351) 0 * * Os_TE_759175 Chr10 19803825 19803826 - COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_759174 Os_TE_759174 Chr10 19803821 19803820 + COPIA2-LTR_OS 6433 0.0003 (1/2922) 0 * Os_TE_759175 Os_TE_759172 Chr10 19800868 19800867 - TRUNCATOR 2918 0.5751 (1202/2090) 0 * * Os_TE_759168 Chr10 19794923 19800611 + SZ-56A_LTR 5689 0.1931 (576/2983) 1 Intact * Os_TE_759167 Chr10 19794799 19794800 - SZ-7A_LTR 11400 0.6070 (885/1458) 0 * * Os_TE_759139 Chr10 19780950 19780949 - ORSgTEMT00100799 337 0.4919 (1466/2980) 0 * Os_TE_759138 Os_TE_759138 Chr10 19780948 19780949 + NDNA1TNA_OS 334 0.6073 (1483/2442) 0 * Os_TE_759139 Os_TE_759126 Chr10 19778065 19778066 - RIREX_LTR 8828 0.0007 (2/2989) 0 * Os_TE_759125 Os_TE_759125 Chr10 19778061 19778060 + RIREX_LTR 8828 0.0007 (2/2990) 0 * Os_TE_759126 Os_TE_759103 Chr10 19770482 19770483 - STOWAWAY51_OS 246 0.0003 (1/2985) 0 * * Os_TE_759090 Chr10 19765308 19765307 - SC-8_LTR 4951 0.0003 (1/2927) 0 * * Os_TE_759084 Chr10 19759550 19759551 - ORSgTEMT00901709 212 0.8117 (2401/2958) 0 * * Os_TE_759052 Chr10 19745894 19745893 + ORSgTEMT02400041 225 0.5741 (1709/2977) 0 * Os_TE_759051 Os_TE_759051 Chr10 19745890 19745891 - ORSgTEMT02400246 177 0.5777 (1725/2986) 0 * Os_TE_759052 Os_TE_759037 Chr10 19738174 19738173 + ORSgTETNOOT01668 244 0.0024 (7/2938) 0 * * Os_TE_759025 Chr10 19733018 19733017 - ORSgTEMT00901723 248 0.0017 (5/2990) 0 * * Os_TE_759020 Chr10 19731062 19731061 + ORSgTETNOOT00908 242 0.0010 (3/2976) 0 * * Os_TE_758986 Chr10 19723539 19723540 - AMYLTP 383 0.0177 (53/2989) 0 * Os_TE_758985 Os_TE_758985 Chr10 19723531 19723530 + AMYLTP 383 0.0167 (50/2988) 0 * Os_TE_758986 Os_TE_758975 Chr10 19715246 19715247 + TWIF 586 0.0005 (1/2195) 0 * * Os_TE_758959 Chr10 19703310 19699720 - ORSiTETNOOT00200 3563 0.1794 (507/2826) 1 Intact * Os_TE_758923 Chr10 19695586 19695585 - ORSgTERT00200486 3946 0.0004 (1/2775) 0 * * Os_TE_758917 Chr10 19695258 19695257 + RETRO2_LTR 12874 0.0032 (7/2218) -1 * * Os_TE_758892 Chr10 19684868 19684869 - NDNA2TNA_OS 346 0.0805 (241/2995) 0 * * Os_TE_758891 Chr10 19684866 19684865 + NDNA1TNA_OS 334 0.0003 (1/2991) 0 * * Os_TE_758870 Chr10 19667891 19667890 - STOWAWAY51_OS 246 0.0003 (1/2971) 0 * * Os_TE_758868 Chr10 19667690 19667691 - COPIA2-LTR_OS 6433 0.0003 (1/2980) 0 * * Os_TE_758851 Chr10 19664233 19664232 + STOWAWAY51_OS 246 0.0017 (5/2994) 0 * Os_TE_758850 Os_TE_758850 Chr10 19664227 19664228 - STOWAWAY51_OS 246 0.0017 (5/2993) 0 * Os_TE_758851 Os_TE_758849 Chr10 19664164 19664163 - STOWAWAY51_OS 246 0.0003 (1/2971) 0 * * Os_TE_758784 Chr10 19646829 19646828 - INDITTO 263 0.0285 (85/2987) 0 * * Os_TE_758780 Chr10 19641188 19641189 + ORSiTERTOOT00296 5553 0.0003 (1/2963) 0 * Os_TE_758779 Os_TE_758779 Chr10 19641184 19641183 - SC-3_LTR 5748 0.0003 (1/2966) 0 * Os_TE_758780 Os_TE_758735 Chr10 19630799 19630800 + ORSgTEMT00600376 329 0.0010 (3/2952) 0 * * Os_TE_758713 Chr10 19622647 19622648 + ORSgTETNOOT01219 231 0.0003 (1/2991) 0 * * Os_TE_758698 Chr10 19613623 19613622 + OSMAR1 5265 0.0003 (1/2992) 0 * Os_TE_758697 Os_TE_758697 Chr10 19613620 19613621 - OSMAR1 5265 0.0003 (1/2985) 0 * Os_TE_758698 Os_TE_758689 Chr10 19610748 19610749 + RIREX_LTR 8828 0.0007 (2/2986) 0 * * Os_TE_758680 Chr10 19605867 19605866 - ORSgTEMT02400167 203 0.8089 (2404/2972) 0 * * Os_TE_758660 Chr10 19602718 19602719 + RETRO1_LTR 8314 0.0004 (1/2839) 0 * Os_TE_758659 Os_TE_758659 Chr10 19602714 19602713 - RETRO2_LTR 12874 0.0004 (1/2839) 0 * Os_TE_758660 Os_TE_758639 Chr10 19597600 19597601 + COPI2_LTR 4733 0.0003 (1/2992) 0 * Os_TE_758638 Os_TE_758638 Chr10 19597596 19597595 - COPI2_LTR 4733 0.0003 (1/2993) 0 * Os_TE_758639 Os_TE_758637 Chr10 19597080 19597081 + ORSiCMCM00100019 2717 0.0070 (21/2985) 0 * Os_TE_758636 Os_TE_758636 Chr10 19597076 19597075 - TRUNCATOR2_LTR 2904 0.0077 (23/2995) 0 * Os_TE_758637 Os_TE_758618 Chr10 19591534 19591174 + ORSgTEMT00600272 361 0.8657 (2539/2933) 1 Intact * Os_TE_758601 Chr10 19588874 19588873 - HELITRON7_OS 10153 0.0004 (1/2423) 0 * Os_TE_758600 Os_TE_758600 Chr10 19588870 19588871 + HELITRON7_OS 10153 0.0004 (1/2443) 0 * Os_TE_758601 Os_TE_758599 Chr10 19588800 19588801 + AMYLTP 383 0.0011 (3/2674) 0 * * Os_TE_758579 Chr10 19583655 19583654 - INDITTO 263 0.5905 (1749/2962) 0 * * Os_TE_758512 Chr10 19570973 19570974 + OSTE20 496 0.0003 (1/2900) 0 * * Os_TE_758509 Chr10 19568502 19568503 - NDNA1TNA_OS 334 0.0013 (4/2998) 0 * Os_TE_758508 Os_TE_758508 Chr10 19568500 19568499 + NDNA1TNA_OS 334 0.0017 (5/2996) 0 * Os_TE_758509 Os_TE_758470 Chr10 19554569 19554568 + ORSgTETNOOT01219 231 0.0822 (241/2933) -1 * * Os_TE_758469 Chr10 19554568 19554569 + ORSgTETNOOT00908 242 0.0836 (246/2944) 0 * Os_TE_758468 Os_TE_758468 Chr10 19554560 19554559 + ORSgTETNOOT01219 231 0.0058 (16/2738) 0 * Os_TE_758469 Os_TE_758464 Chr10 19553719 19553720 + MPING 430 0.0007 (2/2953) 0 * Os_TE_758463 Os_TE_758463 Chr10 19553717 19553716 - MPING 430 0.0007 (2/2957) 0 * Os_TE_758464 Os_TE_758462 Chr10 19553531 19553532 + NDNA1TNA_OS 334 0.0003 (1/2943) 0 * * Os_TE_758459 Chr10 19553422 19553421 - MPING 430 0.0003 (1/2996) 0 * * Os_TE_758457 Chr10 19553179 19553421 + ORSgTETNOOT00908 242 0.1974 (588/2979) 1 Intact * Os_TE_758449 Chr10 19550142 19550141 + STOWAWAY51_OS 246 0.0003 (1/2995) 0 * Os_TE_758448 Os_TE_758448 Chr10 19550136 19550137 - STOWAWAY51_OS 246 0.0003 (1/2996) 0 * Os_TE_758449 Os_TE_758445 Chr10 19546768 19546769 + ORSiTERTOOT00296 5553 0.0010 (3/2990) 0 * Os_TE_758444 Os_TE_758444 Chr10 19546764 19546763 - SC-3_LTR 5748 0.0010 (3/2988) 0 * Os_TE_758445 Os_TE_758428 Chr10 19538797 19538796 - JOUZHENA 607 0.0003 (1/2982) 0 * * Os_TE_758427 Chr10 19538129 19538130 + RIRE2_LTR 11306 0.0003 (1/2994) 0 * * Os_TE_758402 Chr10 19531231 19531232 - STOWAWAY1_OS 149 0.0003 (1/2993) 0 * * Os_TE_758367 Chr10 19502437 19502438 + COPIA2-LTR_OS 6433 0.0003 (1/2898) 0 * Os_TE_758366 Os_TE_758366 Chr10 19502433 19502432 - COPIA2-LTR_OS 6433 0.0003 (1/2894) 0 * Os_TE_758367 Os_TE_758365 Chr10 19501753 19486305 - RETRO2_LTR 12874 0.2103 (606/2881) 1 Intact * Os_TE_758353 Chr10 19485428 19484326 + ORSgTERTOOT00009 12852 0.5943 (621/1045) 1 Intact Os_TE_758350 Os_TE_758350 Chr10 19484326 19485428 - RETRO2_LTR 12874 0.6873 (578/841) 1 Solo_LTR Os_TE_758353 Os_TE_758349 Chr10 19484104 19484105 + COPI2_LTR 4733 0.0003 (1/2898) 0 * * Os_TE_758313 Chr10 19476430 19476431 + SZ-40LTR 2465 0.0003 (1/2993) 0 * Os_TE_758312 Os_TE_758312 Chr10 19476426 19476425 - GYPSY-A_LTR 8951 0.0003 (1/2988) 0 * Os_TE_758313 Os_TE_758302 Chr10 19472449 19472116 + NDNA1TNA_OS 334 0.2041 (602/2950) 1 Intact * Os_TE_758297 Chr10 19472058 19472057 - RIREX_LTR 8828 0.0003 (1/2871) 0 * * Os_TE_758286 Chr10 19469036 19469035 - ORSgTEMT02400246 177 0.0017 (5/2977) 0 * Os_TE_758285 Os_TE_758285 Chr10 19469021 19469022 - TYPEM 227 0.0017 (5/2984) 0 * Os_TE_758286 Os_TE_758275 Chr10 19467291 19467292 + STOWAWAY43_OS 233 0.2070 (613/2962) 0.89 * * Os_TE_758268 Chr10 19465531 19465532 - COPIA2-LTR_OS 6433 0.0003 (1/2977) 0 * Os_TE_758267 Os_TE_758267 Chr10 19465527 19465526 + COPIA2-LTR_OS 6433 0.0003 (1/2981) 0 * Os_TE_758268 Os_TE_758266 Chr10 19462476 19462475 - SC-5 3770 0.0009 (2/2213) 0 * * Os_TE_758205 Chr10 19428781 19428782 - ORSgTEMT02400179 221 0.0037 (11/2971) 0 * Os_TE_758204 Os_TE_758204 Chr10 19428780 19428779 - TYPEM 227 0.0040 (12/2972) 0 * Os_TE_758205 Os_TE_758191 Chr10 19426193 19426192 - COPIA2-LTR_OS 6433 0.0004 (1/2771) 0 * * Os_TE_758175 Chr10 19421311 19421312 - SZ-22_LTR 4403 0.0020 (6/2979) 0 * Os_TE_758174 Os_TE_758174 Chr10 19421307 19421306 + ORSiTERTOOT00226 792 0.0020 (6/2983) 0 * Os_TE_758175 Os_TE_758159 Chr10 19419353 19419352 + ORSgTEMT00101674 340 0.8022 (2369/2953) 0 * Os_TE_758158 Os_TE_758158 Chr10 19419340 19419341 + NDNA1TNA_OS 334 0.7976 (2306/2891) 0 * Os_TE_758159 Os_TE_758134 Chr10 19401645 19401646 + ORSgTEMT01601934 207 0.6749 (1262/1870) 0 * * Os_TE_758133 Chr10 19400151 19400152 - COPIA2-LTR_OS 6433 0.0005 (1/1904) 0 * Os_TE_758132 Os_TE_758132 Chr10 19400147 19400146 + COPIA2-LTR_OS 6433 0.0016 (1/630) 0 * Os_TE_758133 Os_TE_758130 Chr10 19399621 19399620 - COPIA2-LTR_OS 6433 0.0137 (20/1464) 0 * * Os_TE_758129 Chr10 19399227 19399228 - SZ-55_LTR 10318 0.0005 (1/1891) 0 * * Os_TE_758127 Chr10 19399219 19399220 + TRUNCATOR 2918 0.0042 (8/1886) 0 * Os_TE_758126 Os_TE_758126 Chr10 19399213 19399212 - ORSiTERT00200154 9386 0.0037 (7/1897) 0 * Os_TE_758127 Os_TE_758125 Chr10 19398858 19398574 + STOLAB 312 0.3266 (615/1883) 1 Intact Os_TE_758122 Os_TE_758122 Chr10 19398574 19398853 - STOLAB 312 0.3256 (616/1892) 1 Intact Os_TE_758125 Os_TE_758119 Chr10 19398300 19398301 + STOWAWAY51_OS 246 0.0043 (8/1882) 0 * * Os_TE_758106 Chr10 19389401 19389400 + ORSgTEMT01700715 134 0.6807 (1279/1879) 0 * Os_TE_758105 Os_TE_758105 Chr10 19389400 19389401 - ORSgTEMT01702320 154 0.6714 (1228/1829) 0 * Os_TE_758106 Os_TE_758102 Chr10 19387779 19386598 - MERMITE18C 1473 0.3189 (598/1875) 1 Intact Os_TE_758101 Os_TE_758101 Chr10 19386599 19387777 - MERMITE18D 1491 0.3147 (587/1865) 1 Intact Os_TE_758102 Os_TE_758100 Chr10 19385033 19385034 + RETROSAT4_LTR 13504 0.0042 (8/1920) 0 * Os_TE_758099 Os_TE_758099 Chr10 19385029 19385028 - SZ-35LTR 3853 0.0042 (8/1918) 0 * Os_TE_758100 Os_TE_758095 Chr10 19383656 19383491 + STOWAWAY1_OS 149 0.3230 (607/1879) 1 Intact * Os_TE_758089 Chr10 19380657 19380658 - ORSiTERTOOT00366 5449 0.5709 (813/1424) 0 * * Os_TE_758084 Chr10 19378749 19378750 + STOWAWAY41_OS 264 0.3786 (1131/2987) 0 * * Os_TE_758081 Chr10 19376478 19376789 - ORSgTEMT02900061 318 0.2095 (616/2940) 1 Intact * Os_TE_758080 Chr10 19375951 19375952 + OSTE18 129 0.0044 (13/2975) 0 * * Os_TE_758077 Chr10 19375105 19375104 + SZ-55_LTR 10318 0.0003 (1/2995) 0 * * Os_TE_758076 Chr10 19374401 19374400 - ORSgTETNOOT01930 140 0.1467 (439/2992) 0 * Os_TE_758075 Os_TE_758075 Chr10 19374400 19374401 + ORSgTEMT00501356 145 0.1376 (409/2973) 0 * Os_TE_758076 Os_TE_758059 Chr10 19370070 19370071 + NDNA1TNA_OS 334 0.0007 (2/2994) 0 * * Os_TE_758044 Chr10 19360515 19360516 + TOS17LTR 138 0.1967 (588/2990) 0 * Os_TE_758043 Os_TE_758043 Chr10 19360511 19360510 - TOS17LTR 138 0.2001 (599/2993) 0 * Os_TE_758044 Os_TE_758029 Chr10 19349906 19349907 + MDR2 6967 0.0007 (2/2916) 0 * * Os_TE_758027 Chr10 19349485 19349486 - OSTE21 1271 0.0003 (1/2944) 0 * * Os_TE_758012 Chr10 19344837 19344838 + RIRE2_LTR 11306 0.0003 (1/2970) 0 * * Os_TE_758003 Chr10 19342454 19342455 - ORSgTETN00200001 10994 0.0007 (2/2946) 0 * Os_TE_758002 Os_TE_758002 Chr10 19342452 19342451 + SPMLIKE 10989 0.0007 (2/2943) 0 * Os_TE_758003 Os_TE_757987 Chr10 19340872 19340873 - TELIA 141 0.4012 (1174/2926) 0 * * Os_TE_757986 Chr10 19340799 19340234 + ORSgTEMT01900023 299 0.7550 (2188/2898) 1 Intact * Os_TE_757980 Chr10 19340235 19340791 + ORSgTEMT01900020 226 0.3534 (1004/2841) 1 Intact * Os_TE_757971 Chr10 19337572 19337571 + ORSgTEMT00501165 134 0.8121 (2381/2932) 0 * Os_TE_757970 Os_TE_757970 Chr10 19337556 19337557 - ORSgTEMT00501512 150 0.7956 (2265/2847) 0 * Os_TE_757971 Os_TE_757966 Chr10 19335806 19335805 + ORSgTEMT01601143 237 0.8193 (2194/2678) 0 * * Os_TE_757963 Chr10 19335016 19334701 + ORSgTEMT00101116 321 0.1981 (562/2837) 1 Intact * Os_TE_757959 Chr10 19333333 19333334 - TYPEM 227 0.0033 (2/611) 0 * * Os_TE_757954 Chr10 19332958 19332959 + RIREX_LTR 8828 0.0016 (1/625) 0 * * Os_TE_757950 Chr10 19329234 19329235 - MUDRN1_OS 764 0.7416 (1705/2299) 0 * Os_TE_757949 Os_TE_757949 Chr10 19329229 19329228 + MUDRN1_OS 764 0.7999 (2307/2884) 0 * Os_TE_757950 Os_TE_757941 Chr10 19328335 19328334 - ORSgTEMT00501204 149 0.8029 (2395/2983) 0 * * Os_TE_757939 Chr10 19328253 19328125 - ORSgTEMT00501644 152 0.2066 (615/2977) 1 Intact * Os_TE_757935 Chr10 19327829 19327683 + ORSgTEMT01701265 147 0.2272 (619/2724) 1 Intact * Os_TE_757913 Chr10 19308305 19308306 - F569 228 0.7920 (2300/2904) 0 * * Os_TE_757883 Chr10 19301910 19301911 + INDITTO 263 0.0014 (4/2872) 0 * Os_TE_757882 Os_TE_757882 Chr10 19301908 19301907 - INDITTO 263 0.0014 (4/2842) 0 * Os_TE_757883 Os_TE_757878 Chr10 19297436 19297435 + ORSgTEMT01602051 240 0.0027 (2/753) 0 * * Os_TE_757877 Chr10 19297428 19297429 - AMYLTP 383 0.1808 (141/780) 0 * * Os_TE_757876 Chr10 19297264 19297265 + ORSgTEMT00500201 140 0.0039 (3/778) 0 * * Os_TE_757874 Chr10 19297072 19297071 - ORSgTEMT01601432 239 0.1871 (145/775) 0 * Os_TE_757873 Os_TE_757873 Chr10 19297069 19297070 + ORSgTEMT01602181 239 0.0518 (140/2703) 0 * Os_TE_757874 Os_TE_757793 Chr10 19266403 19266402 - RIREX_LTR 8828 0.0010 (3/2995) 0 * * Os_TE_757778 Chr10 19264141 19264142 + ORSgTEMT00101532 332 0.0424 (127/2997) 0 * * Os_TE_757765 Chr10 19258182 19258183 + MuDR2_OS 6770 0.0003 (1/2944) 0 * * Os_TE_757764 Chr10 19257929 19257928 - TYPEM 227 0.0010 (3/2986) 0 * * Os_TE_757757 Chr10 19254253 19254252 - ORSgTEMT02400246 177 0.0646 (188/2911) 0 * * Os_TE_757726 Chr10 19245186 19245187 + ORSiTERTOOT00332 5395 0.0023 (7/2996) 0 * Os_TE_757725 Os_TE_757725 Chr10 19245182 19245181 - ORSiTERTOOT00332 5395 0.0023 (7/2995) 0 * Os_TE_757726 Os_TE_757724 Chr10 19244980 19244981 - MPING 430 0.0010 (3/2897) 0 * Os_TE_757723 Os_TE_757723 Chr10 19244978 19244977 + MPING 430 0.0010 (3/2960) 0 * Os_TE_757724 Os_TE_757722 Chr10 19244933 19244934 + ORSgTETNOOT02577 232 0.5683 (1680/2956) 0 * * Os_TE_757681 Chr10 19222248 19222247 + ORSgTERT00100619 256 0.0003 (1/2984) 0 * * Os_TE_757671 Chr10 19217656 19217657 + INDITTO 263 0.5265 (1571/2984) 0 * * Os_TE_757667 Chr10 19215994 19215995 - SC-4_LTR 5218 0.0007 (2/2977) 0 * * Os_TE_757664 Chr10 19215718 19215717 - STOWAWAY44_OS 240 0.0800 (236/2949) 0 * Os_TE_757663 Os_TE_757663 Chr10 19215715 19215716 + STOWAWAY44_OS 240 0.0646 (188/2910) 0 * Os_TE_757664 Os_TE_757637 Chr10 19196264 19196265 + ORSgTETNOOT00908 242 0.0003 (1/2952) 0 * Os_TE_757636 Os_TE_757636 Chr10 19196256 19196255 + ORSgTETNOOT01219 231 0.0003 (1/2962) 0 * Os_TE_757637 Os_TE_757620 Chr10 19194521 19194522 + STOWAWAY51_OS 246 0.0004 (1/2810) 0 * * Os_TE_757616 Chr10 19189946 19176917 + HELITRON3_OS 12693 0.2023 (605/2990) 1 Intact Os_TE_757612 Os_TE_757612 Chr10 19176917 19188781 - HELITRON3_OS 12693 0.2026 (606/2991) 1 Intact Os_TE_757616 Os_TE_757611 Chr10 19176379 19174943 + SETARIA2 1142 0.1915 (561/2929) -1 Intact Os_TE_757608 Os_TE_757608 Chr10 19174942 19176377 + SETARIA2 1142 0.1921 (566/2947) 1 Intact Os_TE_757611 Os_TE_757607 Chr10 19174310 19174309 + STOWAWAY51_OS 246 0.0010 (3/2965) 0 * Os_TE_757606 Os_TE_757606 Chr10 19174304 19174305 - STOWAWAY51_OS 246 0.0010 (3/2977) 0 * Os_TE_757607 Os_TE_757566 Chr10 19158800 19158799 - STOWAWAY51_OS 246 0.0007 (2/2887) 0 * * Os_TE_757558 Chr10 19153644 19153645 - COPI2_LTR 4733 0.0003 (1/2993) 0 * Os_TE_757557 Os_TE_757557 Chr10 19153640 19153639 + COPI2_LTR 4733 0.0003 (1/2993) 0 * Os_TE_757558 Os_TE_757523 Chr10 19135750 19135751 + ORSgTEMT02000018 177 0.8051 (2251/2796) 0 * * Os_TE_757499 Chr10 19129405 19129406 - SZ-22_LTR 4403 0.0003 (1/2966) 0 * Os_TE_757498 Os_TE_757498 Chr10 19129401 19129400 + ORSiTERTOOT00034 791 0.0003 (1/2947) 0 * Os_TE_757499 Os_TE_757485 Chr10 19125477 19125478 - MuDR2_OS 6770 0.0724 (215/2971) 0 * Os_TE_757484 Os_TE_757484 Chr10 19125468 19125467 + MuDR2_OS 6770 0.0662 (196/2960) 0 * Os_TE_757485 Os_TE_757474 Chr10 19123682 19123681 - SZ-55_LTR 10318 0.0008 (1/1223) 0 * * Os_TE_757473 Chr10 19123270 19123269 + STOWAWAY51_OS 246 0.0003 (1/2988) 0 * Os_TE_757472 Os_TE_757472 Chr10 19123264 19123265 - STOWAWAY51_OS 246 0.0003 (1/2985) 0 * Os_TE_757473 Os_TE_757469 Chr10 19122649 19122648 + ORSgTETNOOT01219 231 0.7887 (2321/2943) 0 * * Os_TE_757463 Chr10 19120779 19120780 - NDNA1TNA_OS 334 0.0134 (40/2996) 0 * Os_TE_757462 Os_TE_757462 Chr10 19120778 19120777 + NDNA1TNA_OS 334 0.0134 (40/2995) 0 * Os_TE_757463 Os_TE_757460 Chr10 19119794 19119795 + RETRO2A_LTR 12895 0.0009 (2/2319) 0 * Os_TE_757459 Os_TE_757459 Chr10 19119790 19119789 - RETRO1_LTR 8314 0.0009 (2/2310) 0 * Os_TE_757460 Os_TE_757451 Chr10 19118472 19118473 - SZ-55_LTR 10318 0.0003 (1/2988) 0 * Os_TE_757450 Os_TE_757450 Chr10 19118468 19118467 + SZ-55_LTR 10318 0.0003 (1/2986) 0 * Os_TE_757451 Os_TE_757445 Chr10 19112024 19112025 + MuDR2_OS 6770 0.0037 (11/2990) 0 * Os_TE_757444 Os_TE_757444 Chr10 19112015 19112014 - MuDR2_OS 6770 0.0030 (9/2993) 0 * Os_TE_757445 Os_TE_757443 Chr10 19111532 19111531 + TESS 244 0.0003 (1/2989) 0 * * Os_TE_757437 Chr10 19108742 19108743 - OSTE24 683 0.0657 (181/2757) 0 * Os_TE_757436 Os_TE_757436 Chr10 19108736 19108735 - OSTE24 683 0.0567 (154/2714) 0 * Os_TE_757437 Os_TE_757434 Chr10 19108110 19108111 + DS-RICE4N 715 0.0867 (259/2989) 0 * Os_TE_757433 Os_TE_757433 Chr10 19108103 19108102 - DS-RICE2N 613 0.0876 (262/2990) 0 * Os_TE_757434 Os_TE_757432 Chr10 19107448 19107449 - SZ-54_LTR 5203 0.0003 (1/2987) 0 * Os_TE_757431 Os_TE_757431 Chr10 19107444 19107443 + SZ-54_LTR 5203 0.0003 (1/2985) 0 * Os_TE_757432 Os_TE_757413 Chr10 19094479 19094480 + NDNA1TNA_OS 334 0.0070 (21/2997) 0 * Os_TE_757412 Os_TE_757412 Chr10 19094477 19094476 - NDNA1TNA_OS 334 0.0073 (22/2996) 0 * Os_TE_757413 Os_TE_757375 Chr10 19077079 19077080 - RIREX_LTR 8828 0.0047 (14/2983) 0 * * Os_TE_757373 Chr10 19076150 19076149 + RETRO2_LTR 12874 0.0020 (6/2988) 0 * * Os_TE_757319 Chr10 19050137 19049804 + NDNA1TNA_OS 334 0.2033 (609/2995) 1 Intact * Os_TE_757313 Chr10 19048481 19048480 + RETRO2A_LTR 12895 0.0305 (91/2983) 0 * * Os_TE_757292 Chr10 19041512 19041513 - RIREX_LTR 8828 0.0004 (1/2699) 0 * * Os_TE_757290 Chr10 19041485 19041484 - RIREX_LTR 8828 0.5718 (1708/2987) 0 * * Os_TE_757289 Chr10 19041340 19041341 + RIRE2_LTR 11306 0.0050 (15/2997) 0 * Os_TE_757288 Os_TE_757288 Chr10 19041336 19041335 - RIRE2_LTR 11306 0.0050 (15/2996) 0 * Os_TE_757289 Os_TE_757242 Chr10 19015258 19015259 + RIREX_LTR 8828 0.0027 (8/2944) 0 * Os_TE_757241 Os_TE_757241 Chr10 19015254 19015253 - RIREX_LTR 8828 0.0027 (8/2922) 0 * Os_TE_757242 Os_TE_757236 Chr10 19008760 19008273 + OSTE20 496 0.1897 (561/2957) 1 Intact * Os_TE_757222 Chr10 18997087 18997086 - ORSgTEMT02400246 177 0.0004 (1/2833) 0 * Os_TE_757221 Os_TE_757221 Chr10 18997086 18997087 - TYPEM 227 0.0004 (1/2834) 0 * Os_TE_757222 Os_TE_757208 Chr10 18993496 18993158 + ORSgTEMT00100531 325 0.2114 (633/2994) 1 Intact Os_TE_757207 Os_TE_757207 Chr10 18993161 18993494 + NDNA1TNA_OS 334 0.2109 (630/2987) 1 Intact Os_TE_757208 Os_TE_757200 Chr10 18988922 18988923 - RETRO1_LTR 8314 0.0074 (22/2989) 0 * Os_TE_757199 Os_TE_757199 Chr10 18988918 18988917 + RETRO1_LTR 8314 0.0074 (22/2992) 0 * Os_TE_757200 Os_TE_757186 Chr10 18983833 18983832 - ORSgTEMT00501711 149 0.0003 (1/2882) 0 * * Os_TE_757183 Chr10 18983587 18983588 + ORSgTEMT00500885 144 0.0003 (1/2958) 0 * * Os_TE_757155 Chr10 18975987 18975988 - ORSgTERT00201216 11284 0.0071 (21/2951) 0 * Os_TE_757154 Os_TE_757154 Chr10 18975983 18975982 - RIRE2_LTR 11306 0.0078 (23/2951) 0 * Os_TE_757155 Os_TE_757152 Chr10 18975337 18975338 - SEVERIN-2 1952 0.0044 (13/2985) 0 * Os_TE_757151 Os_TE_757151 Chr10 18975334 18975333 + SEVERIN-2 1952 0.0050 (15/2985) 0 * Os_TE_757152 Os_TE_757128 Chr10 18968769 18968768 + INDITTO 263 0.0498 (149/2992) 0 * * Os_TE_757117 Chr10 18967934 18967933 - STOWAWAY51_OS 246 0.0020 (6/2989) 0 * * Os_TE_757113 Chr10 18967724 18967723 - RIRE2_LTR 11306 0.0081 (24/2961) 0 * * Os_TE_757092 Chr10 18965393 18965392 - RETRO2_LTR 12874 0.7622 (2160/2834) -1 * * Os_TE_757055 Chr10 18954933 18954932 + SC-8_LTR 4951 0.0003 (1/2965) 0 * * Os_TE_757045 Chr10 18950190 18950191 + CLOUD-6 508 0.0018 (5/2814) 0 * * Os_TE_757022 Chr10 18935848 18935849 + COPIA2-LTR_OS 6433 0.0003 (1/2960) 0 * * Os_TE_757015 Chr10 18934647 18934646 - RETRO1_LTR 8314 0.0007 (2/2977) 0 * * Os_TE_757013 Chr10 18934077 18934078 - ORSiTETNOOT00134 607 0.0203 (45/2221) 0 * Os_TE_757012 Os_TE_757012 Chr10 18934070 18934069 + TWIF 586 0.1794 (482/2687) 0 * Os_TE_757013 Os_TE_756989 Chr10 18912142 18912143 + SC-8_LTR 4951 0.0003 (1/2985) 0 * Os_TE_756988 Os_TE_756988 Chr10 18912138 18912137 - SC-8_LTR 4951 0.0003 (1/2984) 0 * Os_TE_756989 Os_TE_756984 Chr10 18906989 18906990 + ORSiTERTOOT00004 4000 0.0004 (1/2464) 0 * * Os_TE_756957 Chr10 18898551 18898552 - RIREX_LTR 8828 0.0006 (1/1756) 0 * * Os_TE_756955 Chr10 18898471 18898470 + RIREX_LTR 8828 0.0003 (1/2935) 0 * * Os_TE_756953 Chr10 18897959 18897958 + DASIA-2 1198 0.0007 (2/2939) 0 * * Os_TE_756951 Chr10 18897241 18897242 - RETRO1_LTR 8314 0.1120 (332/2964) 0 * Os_TE_756950 Os_TE_756950 Chr10 18897237 18897236 + RETRO2A_LTR 12895 0.1075 (318/2959) 0 * Os_TE_756951 Os_TE_756949 Chr10 18897002 18897003 - RETROSAT3_LTR 11537 0.4061 (1217/2997) 0 * Os_TE_756948 Os_TE_756948 Chr10 18896998 18896997 + RETROSAT3_LTR 11537 0.4065 (1217/2994) 0 * Os_TE_756949 Os_TE_756939 Chr10 18892865 18896379 - MDR2 6967 0.7172 (2123/2960) 1 Intact * Os_TE_756917 Chr10 18888032 18888033 + F569 228 0.0020 (6/2996) 0 * Os_TE_756916 Os_TE_756916 Chr10 18888030 18888029 - F569 228 0.0020 (6/2995) 0 * Os_TE_756917 Os_TE_756888 Chr10 18878238 18878237 + STOWAWAY41_OS 264 0.8104 (2094/2584) -1 * * Os_TE_756882 Chr10 18877037 18877038 + RIREX_LTR 8828 0.4358 (1235/2834) 0 * Os_TE_756881 Os_TE_756881 Chr10 18877033 18877032 - RIREX_LTR 8828 0.4316 (1193/2764) 0 * Os_TE_756882 Os_TE_756865 Chr10 18873501 18873500 + RETRO2_LTR 12874 0.0372 (110/2958) 0 * * Os_TE_756861 Chr10 18873203 18873204 - OSTE20 496 0.0184 (55/2982) 0 * Os_TE_756860 Os_TE_756860 Chr10 18873199 18873198 + OSTE20 496 0.0188 (56/2986) 0 * Os_TE_756861 Os_TE_756858 Chr10 18873154 18873155 - STOWAWAY51_OS 246 0.0315 (94/2983) 0 * * Os_TE_756781 Chr10 18836097 18836096 - ORSiTETNOOT00216 3569 0.0038 (9/2374) 0 * * Os_TE_756732 Chr10 18809173 18809174 + ORSiTERTOOT00296 5553 0.0070 (21/2982) 0 * Os_TE_756731 Os_TE_756731 Chr10 18809169 18809168 - SC-3_LTR 5748 0.0071 (21/2976) 0 * Os_TE_756732 Os_TE_756695 Chr10 18793158 18793159 - MPING 430 0.0037 (11/2979) 0 * Os_TE_756694 Os_TE_756694 Chr10 18793156 18793155 + MPING 430 0.0037 (11/2982) 0 * Os_TE_756695 Os_TE_756649 Chr10 18779756 18779423 - NDNA1TNA_OS 334 0.2087 (621/2975) 1 Intact Os_TE_756648 Os_TE_756648 Chr10 18779423 18779756 + NDNA1TNA_OS 334 0.2102 (626/2978) 1 Intact Os_TE_756649 Os_TE_756644 Chr10 18778941 18778940 + SZ-55_LTR 10318 0.0003 (1/2979) 0 * * Os_TE_756642 Chr10 18778374 18778373 - ORSiTERTOOT00333 4719 0.0020 (6/2987) 0 * * Os_TE_756641 Chr10 18778064 18778063 - RIREX_LTR 8828 0.0064 (19/2985) 0 * * Os_TE_756640 Chr10 18776951 18776952 - COPI2_LTR 4733 0.0254 (76/2993) 0 * Os_TE_756639 Os_TE_756639 Chr10 18776947 18776946 + COPI2_LTR 4733 0.0257 (77/2992) 0 * Os_TE_756640 Os_TE_756635 Chr10 18774466 18774467 - RIRE2_LTR 11306 0.0033 (10/2986) 0 * Os_TE_756634 Os_TE_756634 Chr10 18774462 18774461 + RIRE2_LTR 11306 0.0034 (10/2984) 0 * Os_TE_756635 Os_TE_756628 Chr10 18770350 18770349 - RETROSAT2LTR 12796 0.0268 (76/2839) 0 * * Os_TE_756616 Chr10 18765872 18765873 + INDITTO 263 0.0029 (2/687) 0 * Os_TE_756615 Os_TE_756615 Chr10 18765870 18765869 - INDITTO 263 0.0044 (3/686) 0 * Os_TE_756616 Os_TE_756609 Chr10 18765105 18765106 + MPING 430 0.0201 (60/2991) 0 * * Os_TE_756607 Chr10 18765099 18765100 - ORSgTEMT00901723 248 0.7816 (2341/2995) 0 * * Os_TE_756577 Chr10 18749547 18749548 + ORSiTERTOOT00402 2660 0.0003 (1/2998) 0 * Os_TE_756576 Os_TE_756576 Chr10 18749543 18749542 - ORSiTERTOOT00402 2660 0.0003 (1/2997) 0 * Os_TE_756577 Os_TE_756570 Chr10 18746086 18746500 + ORSgTEMT00300122 416 0.2145 (636/2965) 1 Intact * Os_TE_756546 Chr10 18735686 18735685 - NDNA1TNA_OS 334 0.0040 (12/2994) 0 * Os_TE_756545 Os_TE_756545 Chr10 18735666 18735667 + NDNA1TNA_OS 334 0.0040 (12/2995) 0 * Os_TE_756546 Os_TE_756544 Chr10 18735405 18735404 - ORSgTEMT00500989 146 0.0017 (5/2996) 0 * * Os_TE_756534 Chr10 18733075 18733076 + SETARIA 1402 0.0048 (12/2505) 0 * * Os_TE_756531 Chr10 18733043 18733042 - MDR2 6967 0.0004 (1/2740) 0 * * Os_TE_756513 Chr10 18730039 18730040 - SPMLIKE 10989 0.0010 (3/2982) 0 * * Os_TE_756512 Chr10 18729752 18729753 - COPI2_LTR 4733 0.0003 (1/2955) 0 * Os_TE_756511 Os_TE_756511 Chr10 18729748 18729747 + COPI2_LTR 4733 0.0003 (1/2951) 0 * Os_TE_756512 Os_TE_756508 Chr10 18729181 18729180 + COPI2_LTR 4733 0.0004 (1/2771) 0 * * Os_TE_756503 Chr10 18725582 18725583 - ORSiTEMT01000008 242 0.0017 (5/2908) 0 * Os_TE_756502 Os_TE_756502 Chr10 18725580 18725579 + ORSiTEMT01000008 242 0.0017 (5/2891) 0 * Os_TE_756503 Os_TE_756479 Chr10 18714162 18713082 - RETRO2_LTR 12874 0.2185 (646/2956) 1 Solo_LTR * Os_TE_756467 Chr10 18706575 18706576 - INDITTO 263 0.0003 (1/2904) 0 * Os_TE_756466 Os_TE_756466 Chr10 18706573 18706572 + INDITTO 263 0.0003 (1/2930) 0 * Os_TE_756467 Os_TE_756439 Chr10 18693688 18693689 - TYPEM 227 0.0003 (1/2900) 0 * Os_TE_756438 Os_TE_756438 Chr10 18693687 18693686 - ORSgTEMT02400179 221 0.0003 (1/2939) 0 * Os_TE_756439 Os_TE_756426 Chr10 18685609 18685610 + MPING 430 0.0027 (8/2996) 0 * Os_TE_756425 Os_TE_756425 Chr10 18685607 18685606 - MPING 430 0.0027 (8/2990) 0 * Os_TE_756426 Os_TE_756422 Chr10 18682337 18682336 - SUSU 279 0.0017 (5/2991) 0 * * Os_TE_756410 Chr10 18679154 18679153 - TREP215 239 0.0003 (1/2936) 0 * * Os_TE_756405 Chr10 18673850 18673851 - SC-3_LTR 5748 0.0007 (2/2993) 0 * Os_TE_756404 Os_TE_756404 Chr10 18673846 18673845 + ORSiTERTOOT00296 5553 0.0007 (2/2991) 0 * Os_TE_756405 Os_TE_756384 Chr10 18666051 18666052 + SZ-62LTR 3649 0.0103 (30/2914) 0 * Os_TE_756383 Os_TE_756383 Chr10 18666047 18666046 - SZ-62LTR 3649 0.0102 (30/2940) 0 * Os_TE_756384 Os_TE_756381 Chr10 18665897 18665896 + AMYLTP 383 0.0003 (1/2891) 0 * * Os_TE_756377 Chr10 18663938 18663939 - RETRO1_LTR 8314 0.0007 (2/2993) 0 * Os_TE_756376 Os_TE_756376 Chr10 18663934 18663933 + RETRO2A_LTR 12895 0.0007 (2/2991) 0 * Os_TE_756377 Os_TE_756356 Chr10 18661172 18661171 - SZ-9LTR 965 0.0064 (19/2979) 0 * * Os_TE_756351 Chr10 18660052 18660053 - SZ-17_LTR 3387 0.0003 (1/2997) 0 * Os_TE_756350 Os_TE_756350 Chr10 18660048 18660047 + SZ-17_LTR 3387 0.0003 (1/2997) 0 * Os_TE_756351 Os_TE_756333 Chr10 18655266 18655267 + INDITTO 263 0.7049 (2059/2921) 0 * Os_TE_756332 Os_TE_756332 Chr10 18655264 18655263 - INDITTO 263 0.6845 (1918/2802) 0 * Os_TE_756333 Os_TE_756329 Chr10 18654292 18654293 - COPIA2-LTR_OS 6433 0.6951 (2065/2971) 0 * Os_TE_756328 Os_TE_756328 Chr10 18654288 18654287 + COPIA2-LTR_OS 6433 0.6819 (1983/2908) 0 * Os_TE_756329 Os_TE_756325 Chr10 18653457 18653458 + COPI1_LTR 4721 0.0017 (5/2972) 0 * Os_TE_756324 Os_TE_756324 Chr10 18653453 18653452 - SZ-25LTR 330 0.0017 (5/2973) 0 * Os_TE_756325 Os_TE_756321 Chr10 18652611 18652612 + TWIF 586 0.0003 (1/2972) 0 * Os_TE_756320 Os_TE_756320 Chr10 18652604 18652603 - ORSiTETNOOT00134 607 0.0003 (1/2975) 0 * Os_TE_756321 Os_TE_756315 Chr10 18651695 18651696 + RETROSAT4_LTR 13504 0.0616 (168/2728) 0 * * Os_TE_756301 Chr10 18642046 18642047 + TWIF 586 0.0003 (1/2968) 0 * Os_TE_756300 Os_TE_756300 Chr10 18642039 18642038 - ORSiTETNOOT00134 607 0.0003 (1/2966) 0 * Os_TE_756301 Os_TE_756292 Chr10 18640233 18640232 + AMYLTP 383 0.0306 (87/2839) 0 * * Os_TE_756290 Chr10 18639945 18639946 + STOWAWAY11_OS 292 0.0130 (38/2931) 0 * Os_TE_756289 Os_TE_756289 Chr10 18639944 18639943 - STOWAWAY11_OS 292 0.0129 (38/2937) 0 * Os_TE_756290 Os_TE_756288 Chr10 18639138 18639139 - COPI2_LTR 4733 0.0007 (2/2959) 0 * Os_TE_756287 Os_TE_756287 Chr10 18639134 18639133 + COPI2_LTR 4733 0.0007 (2/2981) 0 * Os_TE_756288 Os_TE_756285 Chr10 18639102 18639103 + ORSgTEMT00501279 126 0.0174 (52/2983) 0 * * Os_TE_756283 Chr10 18638931 18638932 - EnSpm-16_OS 13336 0.0003 (1/2975) 0 * Os_TE_756282 Os_TE_756282 Chr10 18638929 18638928 + EnSpm-16_OS 13336 0.0003 (1/2979) 0 * Os_TE_756283 Os_TE_756281 Chr10 18638859 18638860 + NDNA1TNA_OS 334 0.0003 (1/2968) 0 * * Os_TE_756267 Chr10 18635214 18635215 - TREP215 239 0.0195 (54/2765) 0 * * Os_TE_756263 Chr10 18634514 18634515 - ORSiTERTOOT00269 10834 0.0147 (44/2984) 0 * * Os_TE_756248 Chr10 18631063 18631062 + ORSgTEMT01602141 239 0.0170 (51/2998) 0 * * Os_TE_756238 Chr10 18628416 18628417 + STOWAWAY1_OS 149 0.0084 (25/2992) 0 * * Os_TE_756222 Chr10 18605977 18600787 + ORSgTEMT00300069 394 0.8661 (679/784) 1 Intact Os_TE_756219 Os_TE_756219 Chr10 18600783 18605971 + ORSgTEMT00300122 416 0.3027 (681/2250) 1 Intact Os_TE_756222 Os_TE_756217 Chr10 18600099 18600098 + SC-1_LTR 6888 0.0218 (61/2803) 0 * * Os_TE_756215 Chr10 18600077 18600076 + RIREX_LTR 8828 0.0005 (1/2127) 0 * * Os_TE_756204 Chr10 18590999 18591000 + TWIFB1 3737 0.0004 (1/2730) 0 * * Os_TE_756194 Chr10 18582750 18582751 - ORSgTEMT00901312 242 0.0003 (1/2979) 0 * * Os_TE_756177 Chr10 18579393 18579394 + COPIA2-LTR_OS 6433 0.0007 (2/2984) 0 * Os_TE_756176 Os_TE_756176 Chr10 18579389 18579388 - COPIA2-LTR_OS 6433 0.0007 (2/2979) 0 * Os_TE_756177 Os_TE_756140 Chr10 18571166 18571544 + ORSiTEMT00300001 383 0.2254 (673/2986) 1 Intact * Os_TE_756108 Chr10 18561544 18561543 - TYPEM 227 0.0003 (1/2962) 0 * * Os_TE_756106 Chr10 18559878 18559877 - ORSgTEMT02400179 221 0.0004 (1/2396) 0 * * Os_TE_756102 Chr10 18552898 18552899 - TYPEM 227 0.0033 (10/2993) 0 * Os_TE_756101 Os_TE_756101 Chr10 18552897 18552896 - ORSgTEMT02400179 221 0.0030 (9/2984) 0 * Os_TE_756102 Os_TE_756099 Chr10 18545760 18545761 + SZ-55_LTR 10318 0.0003 (1/2978) 0 * Os_TE_756098 Os_TE_756098 Chr10 18545756 18545755 - SZ-55_LTR 10318 0.0003 (1/2975) 0 * Os_TE_756099 Os_TE_756087 Chr10 18530376 18530377 - MuDR4_OS 7610 0.0035 (7/2023) 0 * Os_TE_756086 Os_TE_756086 Chr10 18530370 18530369 - MuDR4_OS 7610 0.0036 (7/1964) 0 * Os_TE_756087 Os_TE_756078 Chr10 18528534 18528535 + HARB-1_OS 5166 0.0010 (3/2959) 0 * Os_TE_756077 Os_TE_756077 Chr10 18528532 18528531 - HARB-1_OS 5166 0.0010 (3/2949) 0 * Os_TE_756078 Os_TE_756068 Chr10 18527551 18527552 - AMYLTP 383 0.0068 (20/2962) 0 * Os_TE_756067 Os_TE_756067 Chr10 18527543 18527542 + AMYLTP 383 0.0067 (20/2965) 0 * Os_TE_756068 Os_TE_756066 Chr10 18527133 18527134 - COPI2_LTR 4733 0.0003 (1/2984) 0 * * Os_TE_756063 Chr10 18526048 18526049 - NDNA1TNA_OS 334 0.0007 (2/2907) 0 * Os_TE_756062 Os_TE_756062 Chr10 18526046 18526045 + NDNA1TNA_OS 334 0.0007 (2/2927) 0 * Os_TE_756063 Os_TE_756059 Chr10 18522238 18522237 + ORSgTETNOOT01531 255 0.0254 (76/2988) 0 * * Os_TE_756055 Chr10 18521522 18521521 - COPI2_LTR 4733 0.0003 (1/2994) 0 * * Os_TE_756053 Chr10 18520920 18520921 + ORSiTEMT03300001 145 0.0003 (1/2996) 0 * * Os_TE_756044 Chr10 18519797 18519798 + STOWAWAY51_OS 246 0.0010 (3/2988) 0 * * Os_TE_756040 Chr10 18514220 18514221 - NDNA1TNA_OS 334 0.0010 (3/2978) 0 * Os_TE_756039 Os_TE_756039 Chr10 18514218 18514217 + NDNA1TNA_OS 334 0.0003 (1/2971) 0 * Os_TE_756040 Os_TE_756032 Chr10 18513739 18513740 + ORSgTETNOOT00908 242 0.0003 (1/2983) 0 * * Os_TE_756020 Chr10 18511021 18511022 + ORSiTEMT01000008 242 0.0131 (39/2988) 0 * * Os_TE_756010 Chr10 18509469 18509470 + STOWAWAY21_OS 243 0.0030 (9/2960) 0 * * Os_TE_756006 Chr10 18507923 18507924 - MPING 430 0.0004 (1/2794) 0 * * Os_TE_755986 Chr10 18500296 18500297 - RIREX_LTR 8828 0.0003 (1/2984) 0 * * Os_TE_755970 Chr10 18497894 18497895 + SEVERIN-2 1952 0.6432 (1871/2909) 0 * * Os_TE_755968 Chr10 18494937 18494938 - COPI2_LTR 4733 0.0017 (5/2964) 0 * * Os_TE_755963 Chr10 18491690 18491691 + ORSiTERTOOT00296 5553 0.0003 (1/2992) 0 * Os_TE_755962 Os_TE_755962 Chr10 18491686 18491685 - SC-3_LTR 5748 0.0007 (2/2992) 0 * Os_TE_755963 Os_TE_755961 Chr10 18491268 18491269 - SC-3_LTR 5748 0.0003 (1/2990) 0 * Os_TE_755960 Os_TE_755960 Chr10 18491264 18491263 + ORSiTERTOOT00296 5553 0.0003 (1/2988) 0 * Os_TE_755961 Os_TE_755950 Chr10 18487984 18487985 + OSR3_LTR 5201 0.0003 (1/2998) 0 * Os_TE_755949 Os_TE_755949 Chr10 18487980 18487979 - OSR3_LTR 5201 0.0003 (1/2995) 0 * Os_TE_755950 Os_TE_755856 Chr10 18442637 18442638 + COPIA2-LTR_OS 6433 0.5938 (1678/2826) 0 * Os_TE_755855 Os_TE_755855 Chr10 18442633 18442632 - COPIA2-LTR_OS 6433 0.6123 (1786/2917) 0 * Os_TE_755856 Os_TE_755852 Chr10 18442366 18442365 + TWIF 586 0.0015 (4/2672) 0 * * Os_TE_755800 Chr10 18417479 18417480 + SZ-9LTR 965 0.0003 (1/2995) 0 * Os_TE_755799 Os_TE_755799 Chr10 18417475 18417474 - SZ-9LTR 965 0.0003 (1/2995) 0 * Os_TE_755800 Os_TE_755770 Chr10 18406543 18406544 - SZ-22_LTR 4403 0.0003 (1/2959) 0 * Os_TE_755769 Os_TE_755769 Chr10 18406539 18406538 + ORSiTERTOOT00226 792 0.0003 (1/2961) 0 * Os_TE_755770 Os_TE_755762 Chr10 18399798 18399799 - COPI2_LTR 4733 0.0003 (1/2988) 0 * Os_TE_755761 Os_TE_755761 Chr10 18399794 18399793 + COPI2_LTR 4733 0.0003 (1/2987) 0 * Os_TE_755762 Os_TE_755759 Chr10 18398234 18398235 + COPI2_LTR 4733 0.0003 (1/2989) 0 * Os_TE_755758 Os_TE_755758 Chr10 18398230 18398229 - COPI2_LTR 4733 0.0003 (1/2987) 0 * Os_TE_755759 Os_TE_755753 Chr10 18395828 18395829 - ORMOSIA 482 0.0014 (4/2933) 0 * * Os_TE_755752 Chr10 18394418 18394419 - GYPSO_LTR 9828 0.0007 (2/2904) 0 * * Os_TE_755741 Chr10 18386966 18386967 + DASIA-2 1198 0.0017 (5/2945) 0 * * Os_TE_755718 Chr10 18380629 18380630 + TNR8-21 428 0.0003 (1/2978) 0 * * Os_TE_755687 Chr10 18369229 18369230 - SC-3_LTR 5748 0.0003 (1/2983) 0 * Os_TE_755686 Os_TE_755686 Chr10 18369225 18369224 + ORSiTERTOOT00296 5553 0.0003 (1/2987) 0 * Os_TE_755687 Os_TE_755662 Chr10 18352784 18352783 - SZ-67LTR 1540 0.7309 (2143/2932) 0 * * Os_TE_755655 Chr10 18347869 18347870 - SC-3_LTR 5748 0.0003 (1/2980) 0 * Os_TE_755654 Os_TE_755654 Chr10 18347865 18347864 + ORSiTERTOOT00296 5553 0.0003 (1/2975) 0 * Os_TE_755655 Os_TE_755643 Chr10 18342796 18342797 - MuDR2_OS 6770 0.0003 (1/2996) 0 * Os_TE_755642 Os_TE_755642 Chr10 18342787 18342786 + MuDR2_OS 6770 0.0003 (1/2996) 0 * Os_TE_755643 Os_TE_755630 Chr10 18335197 18335198 - SC-3_LTR 5748 0.0003 (1/2974) 0 * Os_TE_755629 Os_TE_755629 Chr10 18335193 18335192 + ORSiTERTOOT00296 5553 0.0003 (1/2979) 0 * Os_TE_755630 Os_TE_755613 Chr10 18325171 18325172 + ORSiTERTOOT00296 5553 0.0003 (1/2995) 0 * Os_TE_755612 Os_TE_755612 Chr10 18325167 18325166 - SC-3_LTR 5748 0.0003 (1/2993) 0 * Os_TE_755613 Os_TE_755610 Chr10 18323703 18323702 + STOWAWAY12_OS 312 0.0003 (1/2980) 0 * * Os_TE_755568 Chr10 18297681 18297413 - ORSgTEMT06100010 269 0.2269 (678/2988) 1 Intact Os_TE_755566 Os_TE_755566 Chr10 18297413 18297681 + ORSgTEMT06100010 269 0.2266 (677/2987) 1 Intact Os_TE_755568 Os_TE_755564 Chr10 18294301 18289874 - SC-7_LTR 4431 0.2603 (666/2559) 1 Intact Os_TE_755559 Os_TE_755559 Chr10 18289874 18294301 + SC-7_LTR 4431 0.2452 (619/2524) 1 Intact Os_TE_755564 Os_TE_755546 Chr10 18284628 18284629 + RIREX_LTR 8828 0.0007 (2/2992) 0 * Os_TE_755545 Os_TE_755545 Chr10 18284624 18284623 - RIREX_LTR 8828 0.0007 (2/2991) 0 * Os_TE_755546 Os_TE_755525 Chr10 18278168 18278169 + MPING 430 0.0012 (1/868) 0 * * Os_TE_755507 Chr10 18260154 18260155 - SC-3_LTR 5748 0.0007 (2/2698) 0 * Os_TE_755506 Os_TE_755506 Chr10 18260150 18260149 + ORSiTERTOOT00296 5553 0.0007 (2/2974) 0 * Os_TE_755507 Os_TE_755496 Chr10 18249567 18249568 - SZ-35LTR 3853 0.0507 (150/2957) 0 * Os_TE_755495 Os_TE_755495 Chr10 18249563 18249562 + RETROSAT4_LTR 13504 0.0480 (142/2958) 0 * Os_TE_755496 Os_TE_755470 Chr10 18240591 18240592 - MuDR3_OS 8604 0.0003 (1/2986) 0 * * Os_TE_755416 Chr10 18220052 18220053 + ORSiTERTOOT00027 10853 0.0007 (2/2990) 0 * Os_TE_755415 Os_TE_755415 Chr10 18220048 18220047 - RIRE3A_LTR 10580 0.0010 (3/2994) 0 * Os_TE_755416 Os_TE_755409 Chr10 18217870 18217871 + CLOUD 734 0.0023 (7/2982) 0 * * Os_TE_755354 Chr10 18192968 18192969 - SZ-67LTR 1540 0.0003 (1/2933) 0 * * Os_TE_755321 Chr10 18182468 18182467 + MuDR2_OS 6770 0.0004 (1/2497) 0 * * Os_TE_755303 Chr10 18175616 18175617 + COPIA2-LTR_OS 6433 0.0007 (2/2956) 0 * Os_TE_755302 Os_TE_755302 Chr10 18175612 18175611 - COPIA2-LTR_OS 6433 0.0010 (3/2957) 0 * Os_TE_755303 Os_TE_755299 Chr10 18173738 18173739 - RETROFIT_LTR 4866 0.0003 (1/2962) 0 * Os_TE_755298 Os_TE_755298 Chr10 18173735 18173734 + ORSiTERTOOT00033 4884 0.0003 (1/2962) 0 * Os_TE_755299 Os_TE_755295 Chr10 18171498 18171497 - GYPSY-A_LTR 8951 0.0004 (1/2655) 0 * * Os_TE_755271 Chr10 18163390 18163391 + RIREX_LTR 8828 0.0017 (5/2970) 0 * Os_TE_755270 Os_TE_755270 Chr10 18163386 18163385 - RIREX_LTR 8828 0.0017 (5/2973) 0 * Os_TE_755271 Os_TE_755222 Chr10 18150156 18149918 - ORSgTEMT01601432 239 0.2623 (780/2974) 1 Intact * Os_TE_755171 Chr10 18134387 18134386 + STOWAWAY44_OS 240 0.0003 (1/2962) 0 * Os_TE_755170 Os_TE_755170 Chr10 18134384 18134385 - STOWAWAY44_OS 240 0.0003 (1/2940) 0 * Os_TE_755171 Os_TE_755165 Chr10 18133529 18133530 + ORSiTERTOOT00034 791 0.0007 (2/2963) 0 * * Os_TE_755158 Chr10 18130373 18130372 - ORSiTETNOOT00134 607 0.0005 (1/1845) 0 * * Os_TE_755096 Chr10 18115511 18115512 + ORSgTETNOOT00032 218 0.0487 (144/2954) 0 * * Os_TE_755091 Chr10 18107001 18107002 - MPING 430 0.0007 (2/2981) 0 * Os_TE_755090 Os_TE_755090 Chr10 18106999 18106998 + MPING 430 0.0007 (2/2979) 0 * Os_TE_755091 Os_TE_755048 Chr10 18082788 18082787 + ORSgTETNOOT01686 252 0.0017 (5/2910) 0 * * Os_TE_755043 Chr10 18082501 18082502 + ORSgTEMT01602119 229 0.0024 (7/2892) 0 * * Os_TE_755019 Chr10 18077063 18077064 - COPIA2-LTR_OS 6433 0.0037 (11/2984) 0 * Os_TE_755018 Os_TE_755018 Chr10 18077059 18077058 + COPIA2-LTR_OS 6433 0.0034 (10/2980) 0 * Os_TE_755019 Os_TE_754916 Chr10 18050017 18050016 - DS-RICE2N 613 0.0617 (183/2965) 0 * * Os_TE_754894 Chr10 18044480 18044479 + ORSgTEMT00101674 340 0.0619 (181/2923) 0 * Os_TE_754893 Os_TE_754893 Chr10 18044476 18044477 + NDNA1TNA_OS 334 0.0659 (194/2944) 0 * Os_TE_754894 Os_TE_754891 Chr10 18044389 18044388 + ORSgTETNOOT00908 242 0.0087 (25/2884) 0 * * Os_TE_754890 Chr10 18044304 18044305 + STOWAWAY13_OS 251 0.0003 (1/2960) 0 * * Os_TE_754865 Chr10 18042565 18042564 + SPMLIKE 10989 0.0003 (1/2988) 0 * * Os_TE_754858 Chr10 18031935 18031602 + NDNA1TNA_OS 334 0.2072 (617/2978) 1 Intact Os_TE_754857 Os_TE_754857 Chr10 18031600 18031935 + ORSgTEMT00100531 325 0.2154 (642/2981) 1 Intact Os_TE_754858 Os_TE_754814 Chr10 18019797 18019796 + OSTE18 129 0.4295 (503/1171) 0 * Os_TE_754813 Os_TE_754813 Chr10 18019793 18019794 - OSTE18 129 0.7727 (2070/2679) 0 * Os_TE_754814 Os_TE_754763 Chr10 18001749 18001750 - MPING 430 0.0003 (1/2998) 0 * Os_TE_754762 Os_TE_754762 Chr10 18001747 18001746 + MPING 430 0.0003 (1/2999) 0 * Os_TE_754763 Os_TE_754747 Chr10 17993987 17993988 + INDITTO 263 0.0003 (1/2952) 0 * Os_TE_754746 Os_TE_754746 Chr10 17993985 17993984 - INDITTO 263 0.0003 (1/2954) 0 * Os_TE_754747 Os_TE_754745 Chr10 17993595 17993596 - LTR10_OS 202 0.0017 (5/2975) 0 * Os_TE_754744 Os_TE_754744 Chr10 17993591 17993590 + LTR10_OS 202 0.0017 (5/2980) 0 * Os_TE_754745 Os_TE_754743 Chr10 17993223 17993224 + YOUREN 286 0.0017 (5/2973) 0 * Os_TE_754742 Os_TE_754742 Chr10 17993221 17993220 - YOUREN 286 0.0017 (5/2975) 0 * Os_TE_754743 Os_TE_754741 Chr10 17993090 17993091 - AMYLTP 383 0.0017 (5/2982) 0 * Os_TE_754740 Os_TE_754740 Chr10 17993082 17993081 + AMYLTP 383 0.0017 (5/2983) 0 * Os_TE_754741 Os_TE_754739 Chr10 17992836 17992837 - GAIJIN 147 0.0017 (5/2960) 0 * Os_TE_754738 Os_TE_754738 Chr10 17992835 17992834 + ORSgTEMT00501027 149 0.0014 (4/2947) 0 * Os_TE_754739 Os_TE_754736 Chr10 17991097 17991096 + COPIA2-LTR_OS 6433 0.0003 (1/2943) 0 * * Os_TE_754723 Chr10 17987346 17987347 - ORSiTEMT01300001 950 0.0007 (2/2949) 0 * * Os_TE_754704 Chr10 17978692 17978691 - RETROSAT3_LTR 11537 0.0017 (5/2986) 0 * * Os_TE_754698 Chr10 17975495 17975496 + ORSgTETNOOT01668 244 0.0013 (4/2981) 0 * * Os_TE_754686 Chr10 17973416 17973417 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * * Os_TE_754684 Chr10 17972932 17972933 - COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * Os_TE_754683 Os_TE_754683 Chr10 17972928 17972927 + COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_754684 Os_TE_754660 Chr10 17958637 17958638 + ORSgTETNOOT01834 251 0.0003 (1/2965) 0 * * Os_TE_754644 Chr10 17949802 17949801 - MUDR_N7_OS 1283 0.0007 (2/2984) 0 * Os_TE_754643 Os_TE_754643 Chr10 17949799 17949800 + MUDR_N7_OS 1283 0.0007 (2/2989) 0 * Os_TE_754644 Os_TE_754610 Chr10 17934697 17934698 + ORSgTETNOOT02316 263 0.0003 (1/2994) 0 * * Os_TE_754599 Chr10 17930997 17930998 - INDITTO 263 0.0003 (1/2967) 0 * * Os_TE_754567 Chr10 17921256 17921257 + TWIFB1 3737 0.0004 (1/2823) 0 * * Os_TE_754561 Chr10 17919525 17919526 + RETRO2_LTR 12874 0.0007 (2/2717) 0 * Os_TE_754560 Os_TE_754560 Chr10 17919521 17919520 - RETRO2_LTR 12874 0.0007 (2/2709) 0 * Os_TE_754561 Os_TE_754549 Chr10 17914256 17914257 - YOUREN 286 0.0003 (1/2991) 0 * * Os_TE_754544 Chr10 17911996 17911997 + MPING 430 0.0003 (1/2943) 0 * Os_TE_754543 Os_TE_754543 Chr10 17911994 17911993 - MPING 430 0.0003 (1/2940) 0 * Os_TE_754544 Os_TE_754513 Chr10 17899056 17898717 + ORSgTEMT00101674 340 0.2316 (675/2915) 1 Intact Os_TE_754512 Os_TE_754512 Chr10 17898720 17899053 + NDNA1TNA_OS 334 0.2387 (692/2899) 1 Intact Os_TE_754513 Os_TE_754511 Chr10 17898632 17898278 - NDNA2TNA_OS 346 0.2397 (702/2929) 1 Intact * Os_TE_754504 Chr10 17898088 17898089 + MPING 430 0.0044 (13/2955) 0 * Os_TE_754503 Os_TE_754503 Chr10 17898086 17898085 - MPING 430 0.0051 (15/2950) 0 * Os_TE_754504 Os_TE_754500 Chr10 17897361 17897362 + ORSiTERTOOT00074 4935 0.0082 (24/2915) 0 * * Os_TE_754423 Chr10 17879352 17879351 - ORSgTEMT02400246 177 0.0121 (36/2978) 0 * * Os_TE_754419 Chr10 17878011 17878012 + RIREX_LTR 8828 0.0003 (1/2988) 0 * * Os_TE_754406 Chr10 17873975 17873976 - MDR2 6967 0.1040 (305/2934) 0 * Os_TE_754405 Os_TE_754405 Chr10 17873967 17873966 + MDR2 6967 0.1001 (293/2928) 0 * Os_TE_754406 Os_TE_754403 Chr10 17873743 17873742 - RIREX_LTR 8828 0.0007 (2/2988) 0 * * Os_TE_754402 Chr10 17871210 17871211 + ORSiTERTOOT00296 5553 0.0003 (1/2987) 0 * Os_TE_754401 Os_TE_754401 Chr10 17871206 17871205 - SC-3_LTR 5748 0.0007 (2/2979) 0 * Os_TE_754402 Os_TE_754400 Chr10 17871107 17871108 + SC-8_LTR 4951 0.0003 (1/2987) 0 * Os_TE_754399 Os_TE_754399 Chr10 17871103 17871102 - SC-8_LTR 4951 0.0003 (1/2986) 0 * Os_TE_754400 Os_TE_754394 Chr10 17868963 17868964 + SC-8_LTR 4951 0.0003 (1/2911) 0 * Os_TE_754393 Os_TE_754393 Chr10 17868959 17868958 - SC-8_LTR 4951 0.0003 (1/2923) 0 * Os_TE_754394 Os_TE_754392 Chr10 17868238 17868237 - ORSgTETN00200001 10994 0.0010 (3/2976) 0 * * Os_TE_754388 Chr10 17866013 17866014 + ORSiTERTOOT00296 5553 0.0014 (4/2956) 0 * * Os_TE_754383 Chr10 17862630 17862631 - SC-3_LTR 5748 0.0003 (1/2995) 0 * Os_TE_754382 Os_TE_754382 Chr10 17862626 17862625 + ORSiTERTOOT00296 5553 0.0003 (1/2996) 0 * Os_TE_754383 Os_TE_754365 Chr10 17854917 17854918 + RETROSAT2LTR 12796 0.0007 (2/2972) 0 * Os_TE_754364 Os_TE_754364 Chr10 17854915 17854914 - RETROSAT2LTR 12796 0.0007 (2/2976) 0 * Os_TE_754365 Os_TE_754311 Chr10 17835015 17835016 + NDNA1TNA_OS 334 0.1071 (321/2997) 0 * Os_TE_754310 Os_TE_754310 Chr10 17835013 17835012 - NDNA1TNA_OS 334 0.1052 (315/2993) 0 * Os_TE_754311 Os_TE_754305 Chr10 17833762 17833763 + ORSiTERT00200145 12238 0.0013 (4/2989) 0 * * Os_TE_754304 Chr10 17833272 17833271 + ORSgTEMT01601591 242 0.0003 (1/2969) 0 * * Os_TE_754295 Chr10 17830982 17830981 + MERMITE-18 1263 0.0056 (1/178) -1 * * Os_TE_754294 Chr10 17830829 17819521 + EnSpm-14_OS 11216 0.3340 (777/2326) 1 Intact * Os_TE_754292 Chr10 17828432 17828431 + SETARIA1 1293 0.0011 (1/875) 0 * * Os_TE_754287 Chr10 17819521 17830829 - EnSpm-14_OS 11216 0.3985 (862/2163) 1 Intact * Os_TE_754286 Chr10 17818879 17818880 + SPMLIKE 10989 0.0007 (2/2796) 0 * * Os_TE_754282 Chr10 17818324 17818325 + ORSgTEMT05200054 274 0.0003 (1/2892) 0 * * Os_TE_754277 Chr10 17816494 17816493 - STOWAWAY11_OS 292 0.0014 (4/2882) 0 * * Os_TE_754216 Chr10 17793325 17793326 + HARB-1_OS 5166 0.0126 (37/2948) 0 * Os_TE_754215 Os_TE_754215 Chr10 17793323 17793322 - HARB-1_OS 5166 0.0124 (37/2992) 0 * Os_TE_754216 Os_TE_754194 Chr10 17769013 17769014 + COPI2_LTR 4733 0.0010 (3/2993) 0 * Os_TE_754193 Os_TE_754193 Chr10 17769009 17769008 - COPI2_LTR 4733 0.0010 (3/2991) 0 * Os_TE_754194 Os_TE_754158 Chr10 17751370 17751371 + COWARD 200 0.0003 (1/2976) 0 * * Os_TE_754091 Chr10 17730398 17730399 - ORSiTERTOOT00367 5639 0.0113 (33/2919) 0 * * Os_TE_754073 Chr10 17725312 17725313 + STOWAWAY51_OS 246 0.0003 (1/2994) 0 * * Os_TE_754060 Chr10 17722188 17722189 - RETRO2_LTR 12874 0.0147 (42/2861) 0 * Os_TE_754059 Os_TE_754059 Chr10 17722184 17722183 + RETRO2_LTR 12874 0.0150 (43/2864) 0 * Os_TE_754060 Os_TE_754032 Chr10 17713440 17713441 + RIREX_LTR 8828 0.0007 (2/2981) 0 * Os_TE_754031 Os_TE_754031 Chr10 17713436 17713435 - RIREX_LTR 8828 0.0007 (2/2984) 0 * Os_TE_754032 Os_TE_754030 Chr10 17712966 17712967 + ORSiTERTOOT00033 4884 0.0003 (1/2969) 0 * Os_TE_754029 Os_TE_754029 Chr10 17712963 17712962 - RETROFIT_LTR 4866 0.0003 (1/2965) 0 * Os_TE_754030 Os_TE_754013 Chr10 17711365 17711364 - COPI2_LTR 4733 0.0003 (1/2967) 0 * * Os_TE_753997 Chr10 17707247 17707248 + RIREX_LTR 8828 0.0007 (2/2958) 0 * Os_TE_753996 Os_TE_753996 Chr10 17707243 17707242 - RIREX_LTR 8828 0.0007 (2/2967) 0 * Os_TE_753997 Os_TE_753939 Chr10 17690438 17690439 - RIREX_LTR 8828 0.0151 (45/2988) 0 * Os_TE_753938 Os_TE_753938 Chr10 17690434 17690433 + RIREX_LTR 8828 0.0147 (44/2985) 0 * Os_TE_753939 Os_TE_753907 Chr10 17675926 17675927 - NDNA1TNA_OS 334 0.0224 (67/2993) 0 * * Os_TE_753895 Chr10 17669882 17669883 - RETROSAT3_LTR 11537 0.0005 (1/1883) 0 * * Os_TE_753891 Chr10 17667876 17667877 - TEMPINDAS 4259 0.0017 (5/2973) 0 * * Os_TE_753879 Chr10 17664584 17664583 - TRUNCATOR 2918 0.0878 (256/2916) 0 * Os_TE_753878 Os_TE_753878 Chr10 17664583 17664584 + TRUNCATOR 2918 0.1054 (302/2865) 0 * Os_TE_753879 Os_TE_753876 Chr10 17664431 17664432 - MPING 430 0.0003 (1/2978) 0 * Os_TE_753875 Os_TE_753875 Chr10 17664429 17664428 + MPING 430 0.0003 (1/2988) 0 * Os_TE_753876 Os_TE_753842 Chr10 17655512 17655513 + OSTONOR1_LTR 6440 0.0095 (28/2958) 0 * * Os_TE_753814 Chr10 17642429 17639261 - RETROSAT2LTR 12796 0.2814 (840/2985) 1 Solo_LTR Os_TE_753810 Os_TE_753810 Chr10 17639261 17642427 + RETROSAT2LTR 12796 0.2842 (830/2920) 1 Solo_LTR Os_TE_753814 Os_TE_753805 Chr10 17636874 17624203 - ORSgTETN00200001 10994 0.2769 (820/2961) 1 Intact Os_TE_753800 Os_TE_753800 Chr10 17624204 17636874 + SPMLIKE 10989 0.2599 (758/2917) 1 Intact Os_TE_753805 Os_TE_753797 Chr10 17623296 17623297 - RIREX_LTR 8828 0.0007 (2/2882) 0 * Os_TE_753796 Os_TE_753796 Chr10 17623292 17623291 + RIREX_LTR 8828 0.0007 (2/2900) 0 * Os_TE_753797 Os_TE_753786 Chr10 17618675 17618676 + ORSiTERTOOT00034 791 0.6082 (1810/2976) 0 * * Os_TE_753756 Chr10 17613056 17613055 - ORSgTEMT01600223 220 0.0004 (1/2844) 0 * * Os_TE_753751 Chr10 17604880 17604879 - ORSiTEMT01300001 950 0.0003 (1/2992) 0 * * Os_TE_753741 Chr10 17603252 17603253 + CASTAWAY 364 0.1003 (299/2980) 0 * * Os_TE_753732 Chr10 17599581 17599816 - ORSgTEMT01601834 234 0.3079 (920/2988) 1 Intact * Os_TE_753722 Chr10 17596278 17596277 + MPING 430 0.0004 (1/2808) 0 * * Os_TE_753721 Chr10 17596032 17596033 - DS-RICE4N 715 0.0005 (1/2038) 0 * * Os_TE_753719 Chr10 17594915 17594914 + STOWAWAY51_OS 246 0.0003 (1/2974) 0 * Os_TE_753718 Os_TE_753718 Chr10 17594909 17594910 - STOWAWAY51_OS 246 0.0003 (1/2982) 0 * Os_TE_753719 Os_TE_753711 Chr10 17594604 17594605 - INDITTO 263 0.6993 (2070/2960) 0 * * Os_TE_753657 Chr10 17577336 17577337 - MuDR2_OS 6770 0.5980 (1779/2975) 0 * Os_TE_753656 Os_TE_753656 Chr10 17577329 17577328 - MuDR2_OS 6770 0.5686 (1620/2849) 0 * Os_TE_753657 Os_TE_753635 Chr10 17569358 17569357 + MUDRN5_OS 374 0.0003 (1/2990) 0 * * Os_TE_753623 Chr10 17563251 17563250 + ORSgTEMT01601591 242 0.0007 (2/2975) 0 * * Os_TE_753622 Chr10 17563248 17563249 - ORSgTEMT01600747 238 0.7525 (2250/2990) 0 * * Os_TE_753620 Chr10 17563036 17563037 - MuDR4_OS 7610 0.0295 (87/2950) 0 * Os_TE_753619 Os_TE_753619 Chr10 17563029 17563028 - MuDR4_OS 7610 0.0285 (84/2949) 0 * Os_TE_753620 Os_TE_753570 Chr10 17549894 17549895 - CENTRE 280 0.0003 (1/2913) 0 * * Os_TE_753533 Chr10 17538502 17538501 + MuDR4_OS 7610 0.0017 (5/2991) 0 * * Os_TE_753516 Chr10 17533249 17533248 + ORSgTETN00200005 1121 0.0014 (4/2962) 0 * Os_TE_753515 Os_TE_753515 Chr10 17533248 17533249 + CACTA-H 1152 0.0013 (4/2974) 0 * Os_TE_753516 Os_TE_753487 Chr10 17525515 17525516 + RIREX_LTR 8828 0.0003 (1/2998) 0 * Os_TE_753486 Os_TE_753486 Chr10 17525511 17525510 - RIREX_LTR 8828 0.0003 (1/2996) 0 * Os_TE_753487 Os_TE_753481 Chr10 17524964 17524965 - RETRO1_LTR 8314 0.0095 (28/2956) 0 * Os_TE_753480 Os_TE_753480 Chr10 17524960 17524959 + RETRO2A_LTR 12895 0.0095 (28/2932) 0 * Os_TE_753481 Os_TE_753423 Chr10 17512260 17512259 + RETROSAT4_LTR 13504 0.3015 (524/1738) 0 * * Os_TE_753421 Chr10 17510987 17510988 + ORSgTETNOOT00670 249 0.0064 (19/2987) 0 * Os_TE_753420 Os_TE_753420 Chr10 17510986 17510985 - ORSgTETNOOT01607 258 0.0064 (19/2973) 0 * Os_TE_753421 Os_TE_753419 Chr10 17510911 17510910 + ORSgTEMT01601591 242 0.0007 (2/2984) 0 * Os_TE_753418 Os_TE_753418 Chr10 17510905 17510906 + STOWAWAY51_OS 246 0.0007 (2/2979) 0 * Os_TE_753419 Os_TE_753403 Chr10 17507199 17507198 - Cassandra_OS-LTR 764 0.0068 (20/2955) 0 * * Os_TE_753394 Chr10 17506756 17506755 - NDNA1TNA_OS 334 0.0003 (1/2965) 0 * * Os_TE_753387 Chr10 17498671 17498670 - ORSgTEMT01601432 239 0.0070 (21/2983) 0 * Os_TE_753386 Os_TE_753386 Chr10 17498668 17498669 - ORSgTEMT01601768 238 0.0070 (21/2980) 0 * Os_TE_753387 Os_TE_753374 Chr10 17492556 17491333 + SZLTR 1249 0.2580 (756/2930) 1 Intact * Os_TE_753365 Chr10 17486785 17486784 - ORSgTEMT01601208 238 0.0017 (5/2987) 0 * Os_TE_753364 Os_TE_753364 Chr10 17486782 17486783 - ORSgTEMT01600639 228 0.0013 (4/2983) 0 * Os_TE_753365 Os_TE_753354 Chr10 17479501 17479502 + ORSiTERTOOT00296 5553 0.0007 (2/2995) 0 * Os_TE_753353 Os_TE_753353 Chr10 17479497 17479496 - SC-3_LTR 5748 0.0007 (2/2991) 0 * Os_TE_753354 Os_TE_753348 Chr10 17475005 17475004 - STOWAWAY51_OS 246 0.0003 (1/2985) 0 * * Os_TE_753327 Chr10 17468853 17468852 - NDNA1TNA_OS 334 0.0003 (1/2918) 0 * * Os_TE_753320 Chr10 17467444 17467443 - ORSgTEMT00101174 225 0.0011 (3/2739) 0 * * Os_TE_753308 Chr10 17465422 17465423 + SZ-67LTR 1540 0.0038 (11/2916) 0 * Os_TE_753307 Os_TE_753307 Chr10 17465418 17465417 - SZ-67LTR 1540 0.0052 (15/2906) 0 * Os_TE_753308 Os_TE_753299 Chr10 17463927 17463926 - MPING 430 0.0015 (4/2639) 0 * * Os_TE_753240 Chr10 17446204 17446205 - HARB-1_OS 5166 0.0120 (36/2995) 0 * Os_TE_753239 Os_TE_753239 Chr10 17446202 17446201 + HARB-1_OS 5166 0.0124 (37/2990) 0 * Os_TE_753240 Os_TE_753214 Chr10 17436252 17436253 + ORSiTERTOOT00226 792 0.0003 (1/2995) 0 * Os_TE_753213 Os_TE_753213 Chr10 17436248 17436247 - SZ-22_LTR 4403 0.0003 (1/2994) 0 * Os_TE_753214 Os_TE_753211 Chr10 17435062 17435063 - SC-8_LTR 4951 0.0037 (11/2950) 0 * Os_TE_753210 Os_TE_753210 Chr10 17435058 17435057 + SC-8_LTR 4951 0.0037 (11/2938) 0 * Os_TE_753211 Os_TE_753208 Chr10 17431291 17431292 + SZ-42LTR 958 0.0008 (2/2661) 0 * * Os_TE_753179 Chr10 17416526 17416527 - COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * Os_TE_753178 Os_TE_753178 Chr10 17416522 17416521 + COPIA2-LTR_OS 6433 0.0003 (1/2982) 0 * Os_TE_753179 Os_TE_753177 Chr10 17416474 17416475 + INDITTO 263 0.0007 (2/2992) 0 * Os_TE_753176 Os_TE_753176 Chr10 17416472 17416471 - INDITTO 263 0.0007 (2/2992) 0 * Os_TE_753177 Os_TE_753174 Chr10 17415564 17415565 - RIREX_LTR 8828 0.0007 (2/2985) 0 * Os_TE_753173 Os_TE_753173 Chr10 17415560 17415559 + RIREX_LTR 8828 0.0007 (2/2986) 0 * Os_TE_753174 Os_TE_753168 Chr10 17415159 17415160 - MPING 430 0.0004 (1/2496) 0 * Os_TE_753167 Os_TE_753167 Chr10 17415157 17415156 + MPING 430 0.0004 (1/2545) -1 * Os_TE_753168 Os_TE_753161 Chr10 17414709 17414710 + DS-RICE2N 613 0.0007 (2/2951) 0 * Os_TE_753160 Os_TE_753160 Chr10 17414702 17414701 - DS-RICE2N 613 0.0003 (1/2988) 0 * Os_TE_753161 Os_TE_753140 Chr10 17409648 17409649 + RIREX_LTR 8828 0.0003 (1/2987) 0 * * Os_TE_753135 Chr10 17407454 17407711 + ORSgTETNOOT02298 258 0.8195 (2375/2898) 1 Intact * Os_TE_753134 Chr10 17407308 17407309 - RIREX_LTR 8828 0.0003 (1/2980) 0 * Os_TE_753133 Os_TE_753133 Chr10 17407304 17407303 + RIREX_LTR 8828 0.0003 (1/2983) 0 * Os_TE_753134 Os_TE_753117 Chr10 17406128 17406241 - ORSgTETNOOT00900 112 0.8327 (2478/2976) 1 Intact * Os_TE_753116 Chr10 17405971 17405970 - ORSgTEMT00901138 254 0.1853 (554/2990) 0 * * Os_TE_753115 Chr10 17405694 17405387 - NDNA2TNA_OS 346 0.8309 (2472/2975) 1 Intact * Os_TE_753094 Chr10 17397940 17397939 + GYPSY-A_LTR 8951 0.0003 (1/2932) 0 * * Os_TE_753083 Chr10 17395382 17389590 + SZ-36LTR 5825 0.8902 (2401/2697) 1 Intact * Os_TE_753081 Chr10 17389951 17389952 + SZ-40LTR 2465 0.0025 (6/2446) 0 * * Os_TE_753079 Chr10 17389568 17389569 + ORSiTETNOOT00128 2115 0.0004 (1/2538) 0 * * Os_TE_753076 Chr10 17389164 17389024 - ORSgTEMT01700216 124 0.8151 (2332/2861) 1 Intact * Os_TE_753068 Chr10 17387171 17387170 + ORSgTEMT01700789 143 0.1881 (563/2993) 0 * Os_TE_753067 Os_TE_753067 Chr10 17387168 17387169 - ORSgTEMT01700507 154 0.1889 (566/2996) 0 * Os_TE_753068 Os_TE_753065 Chr10 17386945 17386712 + ORSgTEMT00900266 245 0.8258 (2469/2990) 1 Intact Os_TE_753061 Os_TE_753061 Chr10 17386708 17386935 - ORSgTEMT00900760 239 0.8242 (2470/2997) 1 Intact Os_TE_753065 Os_TE_753055 Chr10 17385665 17385666 - COPIA2-LTR_OS 6433 0.1796 (536/2985) 0 * Os_TE_753054 Os_TE_753054 Chr10 17385661 17385660 + COPIA2-LTR_OS 6433 0.1728 (515/2981) 0 * Os_TE_753055 Os_TE_753012 Chr10 17373083 17373327 - ORSgTEMT00900099 250 0.4082 (1214/2974) 1 Intact * Os_TE_753011 Chr10 17373069 17373070 + HARB-1_OS 5166 0.0003 (1/2981) 0 * * Os_TE_753009 Chr10 17372822 17372823 + CACTA-B 1103 0.0013 (4/2976) 0 * * Os_TE_753007 Chr10 17372185 17372054 + ORSgTEMT00500512 153 0.4083 (1216/2978) 1 Intact * Os_TE_753004 Chr10 17371955 17371747 - ORSgTEMT00901148 230 0.4047 (1194/2950) 1 Intact * Os_TE_752995 Chr10 17368634 17368397 + ORSgTEMT01601122 212 0.3999 (1190/2976) 1 Intact Os_TE_752994 Os_TE_752994 Chr10 17368399 17368632 + STOWAWAY21_OS 243 0.3999 (1190/2976) 1 Intact Os_TE_752995 Os_TE_752975 Chr10 17361962 17361961 + ORSgTETNOOT00032 218 0.4468 (1116/2498) 0 * * Os_TE_752972 Chr10 17357684 17357683 + ORSgTERT00200633 1080 0.0051 (6/1171) 0 * * Os_TE_752963 Chr10 17354763 17353797 - COPIA2-LTR_OS 6433 0.5094 (621/1219) 1 Solo_LTR * Os_TE_752961 Chr10 17353150 17353151 + ORSiTERTOOT00034 791 0.0023 (3/1299) 0 * * Os_TE_752945 Chr10 17345604 17345603 + MERMITE18B 1306 0.0762 (91/1194) 0 * * Os_TE_752924 Chr10 17336826 17336825 + INDITTO 263 0.4523 (541/1196) 0 * * Os_TE_752923 Chr10 17336726 17336727 - ORSgTETNOOT02417 265 0.0008 (1/1178) 0 * Os_TE_752922 Os_TE_752922 Chr10 17336724 17336723 - INDITTO 263 0.0009 (1/1170) 0 * Os_TE_752923 Os_TE_752906 Chr10 17330026 17330027 + TRUNCATOR 2918 0.4590 (549/1196) 0 * * Os_TE_752895 Chr10 17328275 17328490 + ORSgTEMT01602181 239 0.6624 (1099/1659) 1 Intact * Os_TE_752891 Chr10 17326558 17326557 - TRUNCATOR 2918 0.3750 (528/1408) 0 * Os_TE_752890 Os_TE_752890 Chr10 17326556 17326557 + TRUNCATOR 2918 0.3796 (536/1412) 0 * Os_TE_752891 Os_TE_752889 Chr10 17326095 17326094 + AMYLTP 383 0.0007 (1/1400) 0 * * Os_TE_752885 Chr10 17324700 17324701 + ORSgTETNOOT01275 140 0.0050 (6/1195) 0 * Os_TE_752884 Os_TE_752884 Chr10 17324698 17324697 - ORSgTETNOOT01930 140 0.0031 (5/1605) 0 * Os_TE_752885 Os_TE_752876 Chr10 17323975 17324198 + STOWAWAY43_OS 233 0.4372 (1198/2740) 1 Intact * Os_TE_752873 Chr10 17323401 17323400 + MERMITE18D 1491 0.0573 (168/2934) 0 * * Os_TE_752869 Chr10 17318899 17318898 - RPO_OS 1983 0.2057 (609/2960) 0 * * Os_TE_752867 Chr10 17316969 17316968 - RPO_OS 1983 0.1934 (577/2983) 0 * * Os_TE_752866 Chr10 17316964 17316965 - COPIA2-LTR_OS 6433 0.0010 (3/2995) 0 * * Os_TE_752865 Chr10 17316910 17316909 - ORSgTEMT01900023 299 0.2105 (623/2959) 0 * * Os_TE_752862 Chr10 17316054 17316055 - OSTE19 162 0.2392 (579/2421) 0 * Os_TE_752861 Os_TE_752861 Chr10 17316049 17316048 + WUWU 113 0.1918 (574/2993) 0 * Os_TE_752862 Os_TE_752860 Chr10 17315982 17315981 + STOWAWAY51_OS 246 0.0008 (2/2410) 0 * * Os_TE_752852 Chr10 17311479 17311350 + ORSgTEMT00502094 140 0.7546 (2233/2959) 1 Intact * Os_TE_752841 Chr10 17309830 17309829 + CACTA-I 1124 0.0007 (2/2980) 0 * * Os_TE_752837 Chr10 17309196 17309197 - ORSgTEMT01602413 239 0.1708 (472/2763) 0 * * Os_TE_752834 Chr10 17308242 17308064 - F118 179 0.8180 (2440/2983) 1 Intact Os_TE_752833 Os_TE_752833 Chr10 17308064 17308242 + F118 179 0.8188 (2435/2974) 1 Intact Os_TE_752834 Os_TE_752831 Chr10 17307470 17307471 + ORSgTEMT01601591 242 0.0010 (3/2958) 0 * * Os_TE_752827 Chr10 17305374 17305373 + TREP215 239 0.1929 (573/2970) 0 * Os_TE_752826 Os_TE_752826 Chr10 17305371 17305372 - TREP215 239 0.1887 (559/2963) 0 * Os_TE_752827 Os_TE_752825 Chr10 17304876 17304100 + JINHUA 479 0.8170 (2384/2918) 1 Intact * Os_TE_752811 Chr10 17289618 17289619 + OSTONOR1_LTR 6440 0.2485 (743/2990) 0 * * Os_TE_752805 Chr10 17287085 17287086 - RIREX_LTR 8828 0.0003 (1/2995) 0 * * Os_TE_752784 Chr10 17275228 17275448 - ORSgTETNOOT01219 231 0.2140 (639/2986) 1 Intact * Os_TE_752733 Chr10 17243713 17243714 - RIRE2_LTR 11306 0.1286 (381/2962) 0 * Os_TE_752732 Os_TE_752732 Chr10 17243709 17243708 - ORSgTERT00201216 11284 0.1344 (398/2962) 0 * Os_TE_752733 Os_TE_752731 Chr10 17243616 17243617 + RIREX_LTR 8828 0.0007 (2/2961) 0 * Os_TE_752730 Os_TE_752730 Chr10 17243612 17243611 - RIREX_LTR 8828 0.0007 (2/2983) 0 * Os_TE_752731 Os_TE_752712 Chr10 17237895 17237896 + INDITTO 263 0.0003 (1/2996) 0 * * Os_TE_752710 Chr10 17237379 17237380 - COPIA2-LTR_OS 6433 0.0013 (4/2993) 0 * Os_TE_752709 Os_TE_752709 Chr10 17237375 17237374 + COPIA2-LTR_OS 6433 0.0013 (4/2993) 0 * Os_TE_752710 Os_TE_752680 Chr10 17229584 17229583 - MuDR4_OS 7610 0.0305 (26/853) 0 * * Os_TE_752672 Chr10 17225141 17225142 + ORSiTERTOOT00226 792 0.0004 (1/2853) 0 * * Os_TE_752667 Chr10 17222213 17222214 + MPING 430 0.0003 (1/2973) 0 * Os_TE_752666 Os_TE_752666 Chr10 17222211 17222210 - MPING 430 0.0003 (1/2963) 0 * Os_TE_752667 Os_TE_752646 Chr10 17214746 17214745 + RIREX_LTR 8828 0.0003 (1/2997) 0 * * Os_TE_752637 Chr10 17212612 17212249 - TYPEM 227 0.1592 (404/2537) 1 Intact * Os_TE_752623 Chr10 17203436 17203437 + ORSgTETNOOT00908 242 0.0003 (1/2996) 0 * Os_TE_752622 Os_TE_752622 Chr10 17203430 17203429 + ORSgTETNOOT01219 231 0.0003 (1/2996) 0 * Os_TE_752623 Os_TE_752605 Chr10 17196885 17196886 - RETRO2_LTR 12874 0.0007 (2/2909) 0 * * Os_TE_752592 Chr10 17190108 17190109 - MIDWAY 985 0.0110 (33/2994) 0 * * Os_TE_752591 Chr10 17189512 17189513 - MUDRN1_OS 764 0.1254 (373/2974) 0 * Os_TE_752590 Os_TE_752590 Chr10 17189504 17189503 - MUDRN2_OS 756 0.1238 (368/2972) 0 * Os_TE_752591 Os_TE_752587 Chr10 17183758 17183757 + CASTAWAY 364 0.0003 (1/2992) 0 * * Os_TE_752581 Chr10 17179398 17179399 - RIREX_LTR 8828 0.0110 (22/1996) 0 * * Os_TE_752575 Chr10 17176940 17176939 + ORSgTEMT01601591 242 0.0010 (3/2985) 0 * * Os_TE_752573 Chr10 17175205 17175206 - SC-8_LTR 4951 0.0003 (1/2996) 0 * * Os_TE_752569 Chr10 17174628 17174629 - ORSiTERT00200154 9386 0.0087 (26/2996) 0 * Os_TE_752568 Os_TE_752568 Chr10 17174622 17174621 + TRUNCATOR 2918 0.0087 (26/2998) 0 * Os_TE_752569 Os_TE_752564 Chr10 17174362 17174361 + COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * * Os_TE_752554 Chr10 17169164 17169165 - SZ-62LTR 3649 0.0089 (26/2910) 0 * Os_TE_752553 Os_TE_752553 Chr10 17169160 17169159 + SZ-62LTR 3649 0.0090 (26/2878) 0 * Os_TE_752554 Os_TE_752540 Chr10 17164617 17164616 - RETROSAT3_LTR 11537 0.0007 (2/2990) 0 * * Os_TE_752536 Chr10 17164183 17164184 - RIREX_LTR 8828 0.0003 (1/2965) 0 * Os_TE_752535 Os_TE_752535 Chr10 17164179 17164178 + RIREX_LTR 8828 0.0003 (1/2980) 0 * Os_TE_752536 Os_TE_752533 Chr10 17161584 17161585 + ORSiTERTOOT00296 5553 0.0003 (1/2968) 0 * * Os_TE_752530 Chr10 17159035 17159036 - SC-3_LTR 5748 0.0003 (1/2990) 0 * Os_TE_752529 Os_TE_752529 Chr10 17159031 17159030 + ORSiTERTOOT00296 5553 0.0003 (1/2990) 0 * Os_TE_752530 Os_TE_752518 Chr10 17149525 17149524 + TRUNCATOR 2918 0.0007 (2/2979) 0 * Os_TE_752517 Os_TE_752517 Chr10 17149524 17149525 - TRUNCATOR 2918 0.0007 (2/2973) 0 * Os_TE_752518 Os_TE_752481 Chr10 17124728 17124729 + TWIF 586 0.4964 (1161/2339) 0 * Os_TE_752480 Os_TE_752480 Chr10 17124721 17124720 - ORSiTETNOOT00134 607 0.5552 (1473/2653) 0 * Os_TE_752481 Os_TE_752466 Chr10 17115462 17115463 - ORSiTETNOOT00134 607 0.0004 (1/2740) 0 * Os_TE_752465 Os_TE_752465 Chr10 17115455 17115454 + TWIF 586 0.0004 (1/2733) 0 * Os_TE_752466 Os_TE_752432 Chr10 17090725 17090726 - ORSgTEMT00600478 361 0.0003 (1/2950) 0 * Os_TE_752431 Os_TE_752431 Chr10 17090720 17090719 + ORSgTEMT00600272 361 0.0003 (1/2962) 0 * Os_TE_752432 Os_TE_752430 Chr10 17089700 17089701 - COPI2_LTR 4733 0.0003 (1/2983) 0 * Os_TE_752429 Os_TE_752429 Chr10 17089696 17089695 + COPI2_LTR 4733 0.0003 (1/2976) 0 * Os_TE_752430 Os_TE_752394 Chr10 17083346 17083345 - RETRO2_LTR 12874 0.0007 (2/2989) 0 * * Os_TE_752392 Chr10 17082086 17082087 - INDITTO 263 0.0004 (1/2587) 0 * Os_TE_752391 Os_TE_752391 Chr10 17082084 17082083 + INDITTO 263 0.0004 (1/2593) 0 * Os_TE_752392 Os_TE_752389 Chr10 17080405 17080406 - ORSgTETNOOT01909 259 0.0022 (6/2683) 0 * * Os_TE_752365 Chr10 17064748 17064457 + STOWAWAY11_OS 292 0.8785 (2633/2997) 1 Intact * Os_TE_752329 Chr10 17041531 17041532 - NDNA2TNA_OS 346 0.1708 (507/2968) 0 * * Os_TE_752313 Chr10 17035293 17035294 - MPING 430 0.0013 (3/2301) 0 * * Os_TE_752301 Chr10 17031721 17031720 - RIRE2_LTR 11306 0.1408 (420/2984) 0 * * Os_TE_752296 Chr10 17028144 17028145 + ORSgTEMT01601591 242 0.0003 (1/2984) 0 * * Os_TE_752249 Chr10 17009684 17009685 + ORSgTEMT01701663 106 0.0013 (4/2999) 0 * * Os_TE_752248 Chr10 17009309 17009310 - SZ-62LTR 3649 0.1267 (379/2991) 0 * Os_TE_752247 Os_TE_752247 Chr10 17009305 17009304 + SZ-62LTR 3649 0.1266 (379/2994) 0 * Os_TE_752248 Os_TE_752245 Chr10 17008628 17008627 - SC-3_LTR 5748 0.1255 (375/2987) 0 * * Os_TE_752215 Chr10 16996470 16996469 - ORSgTEMT00501144 154 0.0027 (8/2964) 0 * * Os_TE_752196 Chr10 16943271 16943272 + MDR2 6967 0.0003 (1/2994) 0 * * Os_TE_752195 Chr10 16941748 16941749 + OSTE9 421 0.8583 (2563/2986) 0 * Os_TE_752194 Os_TE_752194 Chr10 16941744 16941743 + OSTE9 421 0.8582 (2560/2983) 0 * Os_TE_752195 Os_TE_752192 Chr10 16941161 16941162 + CACTA-Q 2268 0.0003 (1/2986) 0 * Os_TE_752191 Os_TE_752191 Chr10 16941159 16941158 - CACTA-Q 2268 0.0003 (1/2983) 0 * Os_TE_752192 Os_TE_752188 Chr10 16939153 16939154 + COPI2_LTR 4733 0.0004 (1/2575) 0 * Os_TE_752187 Os_TE_752187 Chr10 16939149 16939148 - COPI2_LTR 4733 0.0004 (1/2589) 0 * Os_TE_752188 Os_TE_752186 Chr10 16939131 16939130 + MPING 430 0.0004 (1/2567) 0 * * Os_TE_752184 Chr10 16938299 16938300 - ORSgTERT00201216 11284 0.1541 (459/2978) 0 * Os_TE_752183 Os_TE_752183 Chr10 16938295 16938294 - RIRE2_LTR 11306 0.1576 (471/2989) 0 * Os_TE_752184 Os_TE_752175 Chr10 16937505 16937506 - TRUNCATOR 2918 0.0864 (234/2708) 0 * * Os_TE_752134 Chr10 16917583 16917584 + STOWAWAY51_OS 246 0.0003 (1/2969) 0 * * Os_TE_752110 Chr10 16912976 16912977 + INDITTO 263 0.0037 (11/2987) 0 * * Os_TE_752093 Chr10 16905594 16905593 + SZ-55_LTR 10318 0.0007 (2/2995) 0 * * Os_TE_752087 Chr10 16902738 16902739 - RIRE2_LTR 11306 0.1399 (419/2995) 0 * Os_TE_752086 Os_TE_752086 Chr10 16902734 16902733 + RIRE2_LTR 11306 0.1366 (409/2994) 0 * Os_TE_752087 Os_TE_752085 Chr10 16901705 16901704 + ORSgTEMT01700791 134 0.0017 (5/2970) 0 * Os_TE_752084 Os_TE_752084 Chr10 16901702 16901703 - ORSgTEMT01701254 154 0.0017 (5/2973) 0 * Os_TE_752085 Os_TE_752083 Chr10 16901608 16901609 - COPI2_LTR 4733 0.0141 (42/2975) 0 * Os_TE_752082 Os_TE_752082 Chr10 16901604 16901603 + COPI2_LTR 4733 0.0134 (40/2977) 0 * Os_TE_752083 Os_TE_752077 Chr10 16900367 16900368 + TWIFB1 3737 0.0003 (1/2989) 0 * * Os_TE_752076 Chr10 16900201 16900202 - COPI2_LTR 4733 0.0003 (1/2993) 0 * * Os_TE_752074 Chr10 16899441 16899440 + ORSgTEMT00901844 250 0.0017 (5/2970) 0 * Os_TE_752073 Os_TE_752073 Chr10 16899437 16899438 - ORSgTEMT00900099 250 0.0020 (6/2971) 0 * Os_TE_752074 Os_TE_752072 Chr10 16898962 16898963 + INDITTO 263 0.0114 (34/2971) 0 * Os_TE_752071 Os_TE_752071 Chr10 16898960 16898959 - INDITTO 263 0.0118 (35/2962) 0 * Os_TE_752072 Os_TE_752066 Chr10 16894897 16894898 - ORSgTERT00201216 11284 0.0260 (76/2918) 0 * Os_TE_752065 Os_TE_752065 Chr10 16894893 16894892 - RIRE2_LTR 11306 0.0256 (75/2933) 0 * Os_TE_752066 Os_TE_752063 Chr10 16892775 16892776 - INDITTO 263 0.0104 (31/2988) 0 * Os_TE_752062 Os_TE_752062 Chr10 16892773 16892772 + INDITTO 263 0.0107 (32/2990) 0 * Os_TE_752063 Os_TE_752046 Chr10 16885505 16885506 - DNAUN1_OS 408 0.0017 (5/2992) 0 * * Os_TE_752035 Chr10 16872143 16884052 - SZ-37_LTR 12001 0.1918 (563/2936) 1 Intact * Os_TE_752031 Chr10 16870525 16870526 - RIRE2_LTR 11306 0.5811 (1724/2967) 0 * * Os_TE_752022 Chr10 16868595 16868596 + NDNA1TNA_OS 334 0.0003 (1/2931) 0 * Os_TE_752021 Os_TE_752021 Chr10 16868593 16868592 - NDNA1TNA_OS 334 0.0003 (1/2955) 0 * Os_TE_752022 Os_TE_751989 Chr10 16861031 16861030 + OSTE15 1168 0.0881 (262/2975) 0 * Os_TE_751988 Os_TE_751988 Chr10 16861005 16861006 - OSTE15 1168 0.0866 (258/2979) 0 * Os_TE_751989 Os_TE_751986 Chr10 16860902 16855828 - SZ-62LTR 3649 0.1878 (560/2982) 1 Intact * Os_TE_751956 Chr10 16845785 16845784 + ORSiTERTOOT00226 792 0.0003 (1/2987) 0 * * Os_TE_751955 Chr10 16844988 16844989 - SC-3_LTR 5748 0.0003 (1/2995) 0 * Os_TE_751954 Os_TE_751954 Chr10 16844984 16844983 + ORSiTERTOOT00296 5553 0.0003 (1/2998) 0 * Os_TE_751955 Os_TE_751953 Chr10 16844578 16844577 + ORSgTEMT01602181 239 0.0007 (2/2984) 0 * * Os_TE_751930 Chr10 16825470 16825471 + TRSA_OS 353 0.0003 (1/2928) 0 * * Os_TE_751891 Chr10 16795952 16795953 + ORSiTERTOOT00296 5553 0.0013 (4/2986) 0 * Os_TE_751890 Os_TE_751890 Chr10 16795948 16795947 - SC-3_LTR 5748 0.0013 (4/2989) 0 * Os_TE_751891 Os_TE_751877 Chr10 16787167 16786888 - SUSU 279 0.3394 (996/2935) 1 Intact Os_TE_751874 Os_TE_751874 Chr10 16786886 16787165 + ORSgTEMT05000092 279 0.3359 (985/2932) 1 Intact Os_TE_751877 Os_TE_751850 Chr10 16775083 16775082 + MPING 430 0.0003 (1/2946) 0 * * Os_TE_751799 Chr10 16757990 16757989 - ORSgTEMT02100001 116 0.0003 (1/2978) 0 * * Os_TE_751791 Chr10 16749883 16744139 - RETRO2_LTR 12874 0.2662 (794/2983) 1 Intact Os_TE_751787 Os_TE_751787 Chr10 16744139 16749883 + RETRO2_LTR 12874 0.2625 (781/2975) 1 Intact Os_TE_751791 Os_TE_751786 Chr10 16743356 16743357 - Cassandra_OS-LTR 764 0.0104 (31/2990) 0 * Os_TE_751785 Os_TE_751785 Chr10 16743352 16743351 + SZ-62LTR 3649 0.0100 (30/2990) 0 * Os_TE_751786 Os_TE_751747 Chr10 16717802 16717803 + ORSgTEMT01400031 216 0.0003 (1/2953) 0 * * Os_TE_751746 Chr10 16715165 16715166 - TEOS1 476 0.0003 (1/2977) 0 * * Os_TE_751733 Chr10 16709201 16709202 + COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_751732 Os_TE_751732 Chr10 16709197 16709196 - COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_751733 Os_TE_751676 Chr10 16683930 16683931 - NDNA1TNA_OS 334 0.0007 (2/2963) 0 * * Os_TE_751639 Chr10 16672132 16672133 + ORSiTERTOOT00296 5553 0.0003 (1/2994) 0 * Os_TE_751638 Os_TE_751638 Chr10 16672128 16672127 - SC-3_LTR 5748 0.0003 (1/2993) 0 * Os_TE_751639 Os_TE_751626 Chr10 16664774 16664773 - ORSgTEMT01600152 226 0.0108 (32/2966) 0 * Os_TE_751625 Os_TE_751625 Chr10 16664765 16664766 + ORSgTEMT01602181 239 0.0127 (38/2985) 0 * Os_TE_751626 Os_TE_751616 Chr10 16662617 16662618 + AMYLTP 383 0.0007 (2/2681) 0 * Os_TE_751615 Os_TE_751615 Chr10 16662609 16662608 - AMYLTP 383 0.0007 (2/2757) 0 * Os_TE_751616 Os_TE_751608 Chr10 16660877 16660876 - INDITTO 263 0.0638 (190/2979) 0 * * Os_TE_751604 Chr10 16658144 16658145 + ORSgTEMT01601122 212 0.6844 (1837/2684) 0 * * Os_TE_751597 Chr10 16650257 16648539 + MERMITEB 1610 0.3071 (873/2843) 1 Intact Os_TE_751594 Os_TE_751594 Chr10 16648538 16650256 + MERMITEB 1610 0.3194 (874/2736) 1 Intact Os_TE_751597 Os_TE_751593 Chr10 16648526 16648527 + MuDR2_OS 6770 0.0007 (2/2681) 0 * Os_TE_751592 Os_TE_751592 Chr10 16648517 16648516 - MuDR2_OS 6770 0.0022 (2/890) 0 * Os_TE_751593 Os_TE_751591 Chr10 16648514 16648515 - ORSiTETNOOT00134 607 0.1203 (358/2976) 0 * Os_TE_751590 Os_TE_751590 Chr10 16648507 16648506 + TWIF 586 0.0370 (94/2541) 0 * Os_TE_751591 Os_TE_751580 Chr10 16646189 16646306 - ORSgTEMT00501219 127 0.2976 (884/2970) 1 Intact * Os_TE_751579 Chr10 16646116 16646117 + STOWAWAY15-2_OS 145 0.5979 (1762/2947) 0 * * Os_TE_751575 Chr10 16644644 16644385 - SINE9_OS 293 0.3041 (891/2930) 1 Intact * Os_TE_751574 Chr10 16644626 16644625 + ORSiTEMT03300001 145 0.0008 (1/1302) 0 * * Os_TE_751573 Chr10 16643586 16643587 - TRUNCATOR2_LTR 2904 0.0022 (2/908) 0 * Os_TE_751572 Os_TE_751572 Chr10 16643582 16643581 + TRUNCATOR2_LTR 2904 0.0007 (2/2968) 0 * Os_TE_751573 Os_TE_751566 Chr10 16640535 16640536 + ORSiTERTOOT00226 792 0.0004 (1/2447) 0 * * Os_TE_751561 Chr10 16638028 16638187 + OSTE19 162 0.3004 (895/2979) 1 Intact * Os_TE_751560 Chr10 16637857 16637517 - ORSgTEMT00100578 341 0.2973 (887/2984) 1 Intact * Os_TE_751558 Chr10 16637084 16637085 - OSTE17 734 0.0124 (37/2995) 0 * Os_TE_751557 Os_TE_751557 Chr10 16637076 16637075 - OSTE17 734 0.0121 (36/2964) 0 * Os_TE_751558 Os_TE_751543 Chr10 16632550 16628685 + RETROSAT4_LTR 13504 0.2459 (732/2977) 1 Solo_LTR * Os_TE_751539 Chr10 16628249 16628684 + JINHUA 479 0.3446 (877/2545) 1 Intact * Os_TE_751535 Chr10 16627957 16628206 + ORSgTEMT00900230 250 0.3051 (883/2894) 1 Intact Os_TE_751534 Os_TE_751534 Chr10 16627891 16627602 + STOWAWAY46_OS 154 0.2973 (876/2947) 1 Intact Os_TE_751535 Os_TE_751527 Chr10 16627076 16626852 - ORSgTEMT00900741 219 0.3074 (876/2850) 1 Intact * Os_TE_751522 Chr10 16626784 16626785 - BAJIELTR 4500 0.7206 (2159/2996) 0 * * Os_TE_751494 Chr10 16616732 16616733 + RETROSAT4_LTR 13504 0.0337 (101/2996) 0 * Os_TE_751493 Os_TE_751493 Chr10 16616728 16616727 - RETROSAT4_LTR 13504 0.0360 (108/2997) 0 * Os_TE_751494 Os_TE_751481 Chr10 16610469 16610470 + ORSiTERTOOT00033 4884 0.0003 (1/2976) 0 * Os_TE_751480 Os_TE_751480 Chr10 16610466 16610465 - RETROFIT_LTR 4866 0.0003 (1/2981) 0 * Os_TE_751481 Os_TE_751471 Chr10 16609921 16609920 - TELIA 141 0.0004 (1/2617) 0 * * Os_TE_751455 Chr10 16605828 16605829 + SZ-9LTR 965 0.0024 (7/2964) 0 * Os_TE_751454 Os_TE_751454 Chr10 16605824 16605823 - SZ-9LTR 965 0.0024 (7/2960) 0 * Os_TE_751455 Os_TE_751453 Chr10 16605772 16605771 + ORSiTERTOOT00074 4935 0.0030 (9/2967) 0 * * Os_TE_751451 Chr10 16603005 16603004 + ORSgTEMT01600300 235 0.0007 (2/2991) 0 * * Os_TE_751400 Chr10 16581610 16581609 - TRUNCATOR 2918 0.0551 (164/2976) 0 * Os_TE_751399 Os_TE_751399 Chr10 16581609 16581610 + TRUNCATOR 2918 0.0584 (174/2982) 0 * Os_TE_751400 Os_TE_751393 Chr10 16579768 16579767 + ORSgTEMT00502437 145 0.0049 (5/1020) 0 * * Os_TE_751383 Chr10 16573861 16573860 - TYPEM 227 0.1213 (111/915) 0 * Os_TE_751382 Os_TE_751382 Chr10 16573860 16573861 - ORSgTEMT02400246 177 0.1134 (105/926) 0 * Os_TE_751383 Os_TE_751381 Chr10 16573057 16573056 - ENSPM4_OS 11610 0.1098 (111/1011) 0 * * Os_TE_751380 Chr10 16572894 16572895 + MPING 430 0.0003 (1/2961) 0 * * Os_TE_751320 Chr10 16538233 16538234 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * * Os_TE_751305 Chr10 16536669 16536668 + F524 291 0.0017 (5/2966) 0 * * Os_TE_751304 Chr10 16536523 16536524 - AMYLTP 383 0.1420 (423/2979) 0 * Os_TE_751303 Os_TE_751303 Chr10 16536515 16536514 + AMYLTP 383 0.1410 (420/2979) 0 * Os_TE_751304 Os_TE_751288 Chr10 16529810 16529811 + COPIA2-LTR_OS 6433 0.0007 (2/2938) 0 * Os_TE_751287 Os_TE_751287 Chr10 16529806 16529805 - COPIA2-LTR_OS 6433 0.0007 (2/2759) 0 * Os_TE_751288 Os_TE_751283 Chr10 16528305 16528306 - ORSgTEMT02200001 208 0.0331 (99/2990) 0 * * Os_TE_751278 Chr10 16523485 16523486 + RETROSAT4_LTR 13504 0.0218 (23/1057) 0 * Os_TE_751277 Os_TE_751277 Chr10 16523481 16523480 - SZ-35LTR 3853 0.6834 (2046/2994) 0 * Os_TE_751278 Os_TE_751275 Chr10 16522249 16522250 - ORSgTETNOOT00053 263 0.8124 (2022/2489) 0 * Os_TE_751274 Os_TE_751274 Chr10 16522247 16522246 - INDITTO 263 0.8125 (2032/2501) 0 * Os_TE_751275 Os_TE_751273 Chr10 16522083 16522084 + ORSiTERTOOT00027 10853 0.0108 (32/2972) 0 * Os_TE_751272 Os_TE_751272 Chr10 16522079 16522078 - RIRE3A_LTR 10580 0.0121 (36/2981) 0 * Os_TE_751273 Os_TE_751271 Chr10 16521660 16521661 - ORSgTETN00200001 10994 0.0109 (32/2943) 0 * Os_TE_751270 Os_TE_751270 Chr10 16521658 16521657 + SPMLIKE 10989 0.0119 (35/2944) 0 * Os_TE_751271 Os_TE_751269 Chr10 16521434 16521435 + COPI2_LTR 4733 0.1090 (322/2953) 0 * Os_TE_751268 Os_TE_751268 Chr10 16521430 16521429 - COPI2_LTR 4733 0.1021 (300/2938) 0 * Os_TE_751269 Os_TE_751263 Chr10 16520904 16520905 - ORSgTETN00200001 10994 0.0010 (3/2990) 0 * Os_TE_751262 Os_TE_751262 Chr10 16520902 16520901 + SPMLIKE 10989 0.0013 (4/2991) 0 * Os_TE_751263 Os_TE_751261 Chr10 16520620 16520621 + MPING 430 0.0033 (10/2992) 0 * Os_TE_751260 Os_TE_751260 Chr10 16520618 16520617 - MPING 430 0.0030 (9/2990) 0 * Os_TE_751261 Os_TE_751244 Chr10 16507348 16507347 + ORSgTEMT01601983 238 0.0385 (115/2985) 0 * Os_TE_751243 Os_TE_751243 Chr10 16507345 16507346 - ORSgTEMT01601432 239 0.0367 (109/2972) 0 * Os_TE_751244 Os_TE_751238 Chr10 16504308 16504309 + MPING 430 0.0014 (1/711) 0 * Os_TE_751237 Os_TE_751237 Chr10 16504306 16504305 - MPING 430 0.0003 (1/2972) 0 * Os_TE_751238 Os_TE_751232 Chr10 16502203 16501965 - ORSgTEMT00901723 248 0.8409 (2363/2810) 1 Intact * Os_TE_751224 Chr10 16498868 16498869 - COPI2_LTR 4733 0.0221 (66/2982) 0 * Os_TE_751223 Os_TE_751223 Chr10 16498864 16498863 + COPI2_LTR 4733 0.0215 (64/2982) 0 * Os_TE_751224 Os_TE_751212 Chr10 16495364 16495363 + ORSgTEMT01602181 239 0.1450 (430/2966) 0 * Os_TE_751211 Os_TE_751211 Chr10 16495361 16495362 - ORSgTEMT01601432 239 0.1497 (446/2980) 0 * Os_TE_751212 Os_TE_751201 Chr10 16492988 16492989 - ORSgTETN00200001 10994 0.0959 (284/2960) 0 * Os_TE_751200 Os_TE_751200 Chr10 16492986 16492985 + SPMLIKE 10989 0.1053 (314/2981) 0 * Os_TE_751201 Os_TE_751181 Chr10 16489442 16489207 - ORSgTEMT01600497 234 0.2575 (753/2924) 1 Intact Os_TE_751177 Os_TE_751177 Chr10 16489207 16489442 - TREP215 239 0.2617 (766/2927) 1 Intact Os_TE_751181 Os_TE_751175 Chr10 16489056 16489057 - SPMLIKE 10989 0.0003 (1/2938) 0 * Os_TE_751174 Os_TE_751174 Chr10 16489054 16489053 + SPMLIKE 10989 0.0004 (1/2509) 0 * Os_TE_751175 Os_TE_751169 Chr10 16485221 16484126 + SETARIA2 1142 0.2700 (770/2852) 1 Intact Os_TE_751167 Os_TE_751167 Chr10 16484127 16485219 + SETARIA2 1142 0.2428 (632/2603) 1 Intact Os_TE_751169 Os_TE_751152 Chr10 16476051 16476050 - TRUNCATOR 2918 0.1550 (462/2981) 0 * * Os_TE_751141 Chr10 16460901 16473871 - SZ-35LTR 3853 0.4132 (1235/2989) 1 Intact * Os_TE_751116 Chr10 16451102 16451103 + OLO24 345 0.0012 (1/827) 0 * * Os_TE_751115 Chr10 16450641 16444525 - MERMITEJ 1498 0.3903 (331/848) 1 Intact Os_TE_751114 Os_TE_751114 Chr10 16444525 16450641 + MERMITEJ 1498 0.3816 (319/836) 1 Intact Os_TE_751115 Os_TE_751113 Chr10 16444164 16443955 + ORSgTEMT01602083 237 0.2672 (793/2968) 1 Intact * Os_TE_751107 Chr10 16443566 16443779 - ORSgTEMT01400019 216 0.3721 (825/2217) 1 Intact * Os_TE_751104 Chr10 16443274 16443273 - ORSgTEMT01601834 234 0.7378 (2201/2983) 0 * * Os_TE_751103 Chr10 16443201 16442835 + ORSgTEMT04800085 366 0.2771 (827/2984) 1 Intact Os_TE_751102 Os_TE_751102 Chr10 16442835 16443194 + ORSgTEMT04800018 359 0.4188 (841/2008) 1 Intact Os_TE_751103 Os_TE_751094 Chr10 16434861 16434623 + ORSgTEMT01602188 240 0.2899 (784/2704) 1 Intact Os_TE_751093 Os_TE_751093 Chr10 16434623 16434859 - TREP215 239 0.2713 (765/2820) 1 Intact Os_TE_751094 Os_TE_751091 Chr10 16434265 16434264 - ORSgTEMT01600152 226 0.7085 (1896/2676) 0 * * Os_TE_751089 Chr10 16433860 16433861 - INDITTO 263 0.0003 (1/2966) 0 * * Os_TE_751086 Chr10 16432806 16432667 - ORSgTETNOOT02245 144 0.2629 (782/2974) 1 Intact * Os_TE_751083 Chr10 16432344 16432557 + COWARD-3 221 0.2581 (770/2983) 1 Intact * Os_TE_751081 Chr10 16430926 16430769 - ORSgTEMT01701348 105 0.3190 (795/2492) 1 Intact * Os_TE_751075 Chr10 16428666 16428667 - COPIA2-LTR_OS 6433 0.0010 (3/2980) 0 * Os_TE_751074 Os_TE_751074 Chr10 16428662 16428661 + COPIA2-LTR_OS 6433 0.0011 (3/2741) 0 * Os_TE_751075 Os_TE_751068 Chr10 16425908 16425909 - SZ-5LTR 1223 0.1407 (419/2978) 0 * Os_TE_751067 Os_TE_751067 Chr10 16425904 16425903 + COPIA1-LTR_OS 9292 0.1428 (425/2977) 0 * Os_TE_751068 Os_TE_751066 Chr10 16425749 16425748 - NDNA1TNA_OS 334 0.0007 (2/2987) 0 * * Os_TE_751065 Chr10 16425542 16425397 + ORSgTEMT00500498 155 0.4629 (1383/2988) 1 Intact Os_TE_751063 Os_TE_751063 Chr10 16425394 16425540 - ORSgTEMT00500102 149 0.5651 (1402/2481) 1 Intact Os_TE_751065 Os_TE_751061 Chr10 16425151 16425150 + ORSgTEMT01701115 144 0.0010 (3/2985) 0 * * Os_TE_751060 Chr10 16424806 16424545 - STOWAWAY34_OS 256 0.6236 (1385/2221) 1 Intact * Os_TE_751050 Chr10 16419629 16419630 + ORSiTERTOOT00027 10853 0.0014 (2/1456) 0 * Os_TE_751049 Os_TE_751049 Chr10 16419625 16419624 - RIRE3A_LTR 10580 0.0007 (2/2995) 0 * Os_TE_751050 Os_TE_751047 Chr10 16419528 16419527 - RETROSAT3_LTR 11537 0.0009 (2/2280) 0 * * Os_TE_751009 Chr10 16399530 16399674 - TNR2A 152 0.3520 (315/895) 1 Intact * Os_TE_750977 Chr10 16389454 16389455 + COPI2_LTR 4733 0.0004 (1/2782) 0 * Os_TE_750976 Os_TE_750976 Chr10 16389450 16389449 - COPI2_LTR 4733 0.0003 (1/2899) 0 * Os_TE_750977 Os_TE_750948 Chr10 16378530 16378529 + TRUNCATOR 2918 0.0548 (91/1661) 0 * * Os_TE_750946 Chr10 16377314 16377313 - CACTA-M 1129 0.8204 (1389/1693) 0 * * Os_TE_750931 Chr10 16366183 16366182 - LINE-7_OS 7090 0.0012 (2/1689) 0 * * Os_TE_750910 Chr10 16363407 16363408 - MPING 430 0.0012 (2/1710) 0 * Os_TE_750909 Os_TE_750909 Chr10 16363405 16363404 + MPING 430 0.0012 (2/1706) 0 * Os_TE_750910 Os_TE_750846 Chr10 16342378 16342377 + ORSgTERT00200703 412 0.0032 (7/2207) 0 * * Os_TE_750810 Chr10 16332664 16332665 + CLOUD-3 550 0.0010 (2/2043) 0 * * Os_TE_750808 Chr10 16332487 16332488 + COPIA2-LTR_OS 6433 0.0004 (1/2782) 0 * Os_TE_750807 Os_TE_750807 Chr10 16332483 16332482 - COPIA2-LTR_OS 6433 0.0003 (1/2880) 0 * Os_TE_750808 Os_TE_750806 Chr10 16332440 16332441 + TRUNCATOR2_LTR 2904 0.4368 (1274/2917) 0 * Os_TE_750805 Os_TE_750805 Chr10 16332436 16332435 - TRUNCATOR2_LTR 2904 0.4289 (1243/2898) 0 * Os_TE_750806 Os_TE_750791 Chr10 16327276 16327277 - ORSiTETNOOT00151 3651 0.1414 (416/2943) 0 * Os_TE_750790 Os_TE_750790 Chr10 16327269 16327268 + TWIFB1 3737 0.1368 (401/2931) 0 * Os_TE_750791 Os_TE_750789 Chr10 16325399 16325400 + RETRO2A_LTR 12895 0.1964 (584/2974) 0 * Os_TE_750788 Os_TE_750788 Chr10 16325395 16325394 - RETRO2_LTR 12874 0.1978 (590/2983) 0 * Os_TE_750789 Os_TE_750773 Chr10 16320940 16320939 + TRUNCATOR 2918 0.0144 (43/2989) 0 * Os_TE_750772 Os_TE_750772 Chr10 16320939 16320940 - TRUNCATOR 2918 0.0147 (44/2988) 0 * Os_TE_750773 Os_TE_750769 Chr10 16319901 16319902 + RETRO1_LTR 8314 0.4324 (1282/2965) 0 * * Os_TE_750766 Chr10 16319358 16319359 - Mudr5_OS 5952 0.0374 (110/2938) 0 * Os_TE_750765 Os_TE_750765 Chr10 16319353 16319352 - MUDROS1 4932 0.0357 (105/2938) 0 * Os_TE_750766 Os_TE_750721 Chr10 16305919 16305920 - ORSgTETN00200001 10994 0.0007 (2/2994) 0 * Os_TE_750720 Os_TE_750720 Chr10 16305917 16305916 + SPMLIKE 10989 0.0007 (2/2990) 0 * Os_TE_750721 Os_TE_750712 Chr10 16304049 16304048 + STOWAWAY11_OS 292 0.0014 (3/2216) 0 * * Os_TE_750658 Chr10 16283005 16283006 - COWARD 200 0.7307 (1669/2284) 0 * * Os_TE_750656 Chr10 16282731 16282936 - ORSgTETNOOT00378 231 0.2813 (606/2154) 1 Intact * Os_TE_750653 Chr10 16280096 16280095 - RIRE3_LTR 12054 0.7517 (1801/2396) 0 * * Os_TE_750646 Chr10 16277502 16277503 - ORSgTEMT01602413 239 0.0005 (1/2025) 0 * * Os_TE_750645 Chr10 16277468 16277467 - ORSgTEMT01602413 239 0.7319 (1660/2268) 0 * Os_TE_750644 Os_TE_750644 Chr10 16277467 16277468 + ORSgTEMT01602004 234 0.7407 (1720/2322) 0 * Os_TE_750645 Os_TE_750640 Chr10 16276741 16276591 + ORSgTEMT01700513 151 0.2705 (623/2303) 1 Intact Os_TE_750639 Os_TE_750639 Chr10 16276588 16276741 + ORSgTEMT01701668 154 0.2708 (631/2330) 1 Intact Os_TE_750640 Os_TE_750638 Chr10 16275421 16275176 - ORSgTEMT00900034 246 0.2669 (635/2379) 1 Intact Os_TE_750636 Os_TE_750636 Chr10 16275174 16275421 - ORSgTEMT00900099 250 0.2684 (639/2381) 1 Intact Os_TE_750638 Os_TE_750627 Chr10 16270203 16270202 + TRUNCATOR 2918 0.1382 (336/2431) 0 * Os_TE_750626 Os_TE_750626 Chr10 16270202 16270203 - TRUNCATOR 2918 0.1340 (323/2410) 0 * Os_TE_750627 Os_TE_750615 Chr10 16265778 16265779 - COPI2_LTR 4733 0.0025 (6/2409) 0 * Os_TE_750614 Os_TE_750614 Chr10 16265774 16265773 + COPI2_LTR 4733 0.0021 (5/2405) 0 * Os_TE_750615 Os_TE_750606 Chr10 16262577 16261272 - OSTE14 885 0.1320 (289/2189) 1 Intact Os_TE_750605 Os_TE_750605 Chr10 16261272 16262573 - OSTE14 885 0.1309 (307/2346) 1 Intact Os_TE_750606 Os_TE_750601 Chr10 16259697 16259696 + GYPSY-A_LTR 8951 0.8678 (2002/2307) 0 * * Os_TE_750592 Chr10 16255475 16255474 - ORSgTETN00200001 10994 0.0154 (37/2401) 0 * * Os_TE_750591 Chr10 16254921 16254922 - STOWAWAY8_OS 259 0.0008 (2/2406) 0 * * Os_TE_750589 Chr10 16254334 16254333 - ORSgTEMT00501356 145 0.0007 (2/2911) 0 * * Os_TE_750588 Chr10 16254328 16254327 + ORSgTEMT00501504 140 0.0007 (2/2897) 0 * * Os_TE_750570 Chr10 16252619 16252620 - TRUNCATOR2_LTR 2904 0.0154 (46/2990) 0 * Os_TE_750569 Os_TE_750569 Chr10 16252615 16252614 + TRUNCATOR2_LTR 2904 0.0141 (42/2986) 0 * Os_TE_750570 Os_TE_750568 Chr10 16252177 16252178 + COPI2_LTR 4733 0.0020 (6/2992) 0 * * Os_TE_750543 Chr10 16242165 16242164 + COPIA2-LTR_OS 6433 0.0080 (24/2996) 0 * * Os_TE_750532 Chr10 16234717 16234716 - COWARD 200 0.0022 (3/1394) -1 * * Os_TE_750528 Chr10 16234093 16234094 - ORSgTEMT01602467 227 0.0017 (5/2859) 0 * * Os_TE_750527 Chr10 16233746 16233747 + RIREX_LTR 8828 0.0118 (35/2973) 0 * Os_TE_750526 Os_TE_750526 Chr10 16233742 16233741 - RIREX_LTR 8828 0.0111 (33/2967) 0 * Os_TE_750527 Os_TE_750525 Chr10 16233365 16233366 - ORSgTEMT00502293 151 0.0017 (5/2985) 0 * * Os_TE_750524 Chr10 16232741 16232742 - INDITTO 263 0.0087 (25/2864) 0 * Os_TE_750523 Os_TE_750523 Chr10 16232739 16232738 + INDITTO 263 0.0085 (25/2938) 0 * Os_TE_750524 Os_TE_750520 Chr10 16230663 16230662 - NDNA1TNA_OS 334 0.0361 (102/2823) 0 * * Os_TE_750490 Chr10 16222000 16222001 + INDITTO 263 0.0013 (4/2992) 0 * Os_TE_750489 Os_TE_750489 Chr10 16221998 16221997 - INDITTO 263 0.0013 (4/2993) 0 * Os_TE_750490 Os_TE_750487 Chr10 16219777 16219778 + SPMLIKE 10989 0.0448 (134/2990) 0 * Os_TE_750486 Os_TE_750486 Chr10 16219775 16219774 - ORSgTETN00200001 10994 0.0433 (129/2980) 0 * Os_TE_750487 Os_TE_750484 Chr10 16218291 16218290 - RETROSAT3_LTR 11537 0.0107 (32/2992) 0 * * Os_TE_750483 Chr10 16217984 16214065 + RETROSAT4_LTR 13504 0.1095 (312/2849) 1 Solo_LTR * Os_TE_750476 Chr10 16213907 16213906 - SZ-35LTR 3853 0.1606 (436/2714) 0 * * Os_TE_750470 Chr10 16210423 16210424 - TELIA 141 0.1310 (390/2977) 0 * Os_TE_750469 Os_TE_750469 Chr10 16210415 16210414 + TELIA 141 0.1266 (375/2962) 0 * Os_TE_750470 Os_TE_750454 Chr10 16207754 16207755 + SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_750453 Os_TE_750453 Chr10 16207750 16207749 - SC-8_LTR 4951 0.0003 (1/2995) 0 * Os_TE_750454 Os_TE_750401 Chr10 16185204 16185205 - SINE9_OS 293 0.0889 (262/2946) 0 * * Os_TE_750336 Chr10 16130809 16130808 + MDR2 6967 0.0007 (2/2994) 0 * * Os_TE_750320 Chr10 16121703 16121702 - ORSgTEMT01400012 212 0.0014 (4/2838) 0 * * Os_TE_750316 Chr10 16119605 16119606 - STOWAWAY51_OS 246 0.0007 (2/2982) 0 * * Os_TE_750315 Chr10 16119568 16119569 + MPING 430 0.0003 (1/2974) 0 * Os_TE_750314 Os_TE_750314 Chr10 16119566 16119565 - MPING 430 0.0003 (1/2982) 0 * Os_TE_750315 Os_TE_750294 Chr10 16115947 16115946 + OSTE21 1271 0.0465 (135/2905) 0 * * Os_TE_750270 Chr10 16109908 16109909 + MPING 430 0.0003 (1/2996) 0 * Os_TE_750269 Os_TE_750269 Chr10 16109906 16109905 - MPING 430 0.0003 (1/2994) 0 * Os_TE_750270 Os_TE_750257 Chr10 16104302 16104303 + RIREX_LTR 8828 0.0003 (1/2925) 0 * Os_TE_750256 Os_TE_750256 Chr10 16104298 16104297 - RIREX_LTR 8828 0.0003 (1/2929) 0 * Os_TE_750257 Os_TE_750250 Chr10 16101886 16101885 - RETROSAT2LTR 12796 0.0007 (2/2931) 0 * * Os_TE_750237 Chr10 16095995 16095996 + SC-8_LTR 4951 0.0013 (4/2993) 0 * Os_TE_750236 Os_TE_750236 Chr10 16095991 16095990 - SC-8_LTR 4951 0.0013 (4/2996) 0 * Os_TE_750237 Os_TE_750222 Chr10 16090764 16090765 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * * Os_TE_750214 Chr10 16087870 16087871 - RETRO2_LTR 12874 0.1460 (433/2965) 0 * Os_TE_750213 Os_TE_750213 Chr10 16087866 16087865 + RETRO2_LTR 12874 0.1398 (411/2940) 0 * Os_TE_750214 Os_TE_750203 Chr10 16085240 16085239 + SEVERIN-2 1952 0.4388 (1304/2972) 0 * * Os_TE_750199 Chr10 16083854 16083853 + OSTONOR1_LTR 6440 0.1366 (405/2965) 0 * * Os_TE_750165 Chr10 16075752 16075751 + ORSiTERTOOT00074 4935 0.0003 (1/2994) 0 * * Os_TE_750160 Chr10 16073416 16073417 + RIREX_LTR 8828 0.0007 (2/2991) 0 * Os_TE_750159 Os_TE_750159 Chr10 16073412 16073411 - RIREX_LTR 8828 0.0003 (1/2993) 0 * Os_TE_750160 Os_TE_750156 Chr10 16072419 16072420 + ORSiTERTOOT00226 792 0.0003 (1/2987) 0 * Os_TE_750155 Os_TE_750155 Chr10 16072415 16072414 - SZ-22_LTR 4403 0.0003 (1/2976) 0 * Os_TE_750156 Os_TE_750154 Chr10 16072193 16072192 - RIREX_LTR 8828 0.0003 (1/2994) 0 * * Os_TE_750093 Chr10 16047316 16047317 + RETROSAT2LTR 12796 0.0003 (1/2981) 0 * Os_TE_750092 Os_TE_750092 Chr10 16047314 16047313 - RETROSAT2LTR 12796 0.0003 (1/2985) 0 * Os_TE_750093 Os_TE_750091 Chr10 16046440 16046441 + SZ-62LTR 3649 0.1272 (368/2893) 0 * Os_TE_750090 Os_TE_750090 Chr10 16046436 16046435 - SZ-62LTR 3649 0.1255 (376/2996) 0 * Os_TE_750091 Os_TE_750057 Chr10 16040735 16040736 + COPI2_LTR 4733 0.0003 (1/2993) 0 * * Os_TE_750056 Chr10 16040690 16040691 - COPI2_LTR 4733 0.0003 (1/2970) 0 * Os_TE_750055 Os_TE_750055 Chr10 16040686 16040685 + COPI2_LTR 4733 0.0003 (1/2983) 0 * Os_TE_750056 Os_TE_750050 Chr10 16036129 16036130 - ORSgTEMT00500095 150 0.7617 (2212/2904) 0 * * Os_TE_750048 Chr10 16036079 16035959 + ORSgTETNOOT00317 139 0.2749 (724/2634) 1 Intact Os_TE_750046 Os_TE_750046 Chr10 16035953 16036077 - ORSgTEMT00500471 125 0.2420 (721/2979) 1 Intact Os_TE_750048 Os_TE_750045 Chr10 16035512 16035511 - ORSgTEMT00501087 149 0.7597 (2194/2888) 0 * * Os_TE_750043 Chr10 16034028 16034029 + NDNA1TNA_OS 334 0.3322 (987/2971) 0 * * Os_TE_750028 Chr10 16026367 16026368 + ORSgTEMT00501934 148 0.7680 (2284/2974) 0 * * Os_TE_750011 Chr10 16019527 16019528 - STOWAWAY1_OS 149 0.7715 (2286/2963) 0 * Os_TE_750010 Os_TE_750010 Chr10 16019526 16019525 - STOWAWAY1_OS 149 0.7685 (2247/2924) 0 * Os_TE_750011 Os_TE_749984 Chr10 16004480 16004340 + ORSgTEMT00500560 148 0.3469 (722/2081) 1 Intact * Os_TE_749979 Chr10 16003583 16003446 + ORSgTETNOOT01930 140 0.2444 (707/2893) 1 Intact * Os_TE_749954 Chr10 15998599 15998600 + ORSgTEMT00501165 134 0.6382 (1785/2797) 0 * * Os_TE_749953 Chr10 15998561 15998562 + ORSgTEMT00101532 332 0.7711 (2298/2980) 0 * * Os_TE_749951 Chr10 15998536 15998535 - NDNA1TNA_OS 334 0.0004 (1/2318) 0 * * Os_TE_749950 Chr10 15997498 15996964 + ORSgTEMT05200029 287 0.2412 (708/2935) 1 Intact Os_TE_749945 Os_TE_749945 Chr10 15996964 15997498 + YOUREN 286 0.2403 (639/2659) 1 Intact Os_TE_749950 Os_TE_749927 Chr10 15992512 15992263 - ORSgTETNOOT02565 240 0.2372 (710/2993) 1 Intact * Os_TE_749913 Chr10 15989183 15989182 - ORSiTERTOOT00074 4935 0.2738 (819/2991) 0 * * Os_TE_749910 Chr10 15985921 15985922 + OSTE20 496 0.7676 (2252/2934) 0 * Os_TE_749909 Os_TE_749909 Chr10 15985917 15985916 - OSTE20 496 0.7458 (2027/2718) 0 * Os_TE_749910 Os_TE_749907 Chr10 15984716 15984717 - HATOS1 3488 0.7630 (2237/2932) 0 * * Os_TE_749902 Chr10 15976247 15975877 - ORSgTEMT04800063 360 0.2471 (717/2902) 1 Intact Os_TE_749900 Os_TE_749900 Chr10 15975876 15976247 + ORSgTEMT04800085 366 0.3031 (721/2379) 1 Intact Os_TE_749902 Os_TE_749898 Chr10 15975236 15975665 + TNR12 528 0.2587 (698/2698) 1 Intact * Os_TE_749884 Chr10 15971453 15971192 + STOWAWAY45_OS 266 0.2366 (697/2946) 1 Intact * Os_TE_749879 Chr10 15968824 15968825 + RETROSAT4_LTR 13504 0.0014 (4/2952) 0 * * Os_TE_749855 Chr10 15953020 15965923 - RETRO2_LTR 12874 0.1083 (320/2955) 1 Intact * Os_TE_749853 Chr10 15951425 15951207 - TYPEM 227 0.2407 (680/2825) 1 Intact Os_TE_749851 Os_TE_749851 Chr10 15951206 15951426 - ORSgTEMT02400179 221 0.2466 (654/2652) 1 Intact Os_TE_749853 Os_TE_749827 Chr10 15941181 15941520 + ORSgTEMT00101674 340 0.2371 (710/2995) 1 Intact * Os_TE_749812 Chr10 15935122 15935123 + STOWAWAY1_OS 149 0.7678 (2272/2959) 0 * Os_TE_749811 Os_TE_749811 Chr10 15935121 15935120 - STOWAWAY1_OS 149 0.7676 (2286/2978) 0 * Os_TE_749812 Os_TE_749810 Chr10 15935081 15935082 - SC-3_LTR 5748 0.0003 (1/2965) 0 * Os_TE_749809 Os_TE_749809 Chr10 15935077 15935076 + ORSiTERTOOT00296 5553 0.0003 (1/2885) 0 * Os_TE_749810 Os_TE_749802 Chr10 15928259 15928260 + ORSgTEMT01900014 307 0.7586 (2127/2804) 0 * Os_TE_749801 Os_TE_749801 Chr10 15928258 15928257 - TYPEH 309 0.7555 (2132/2822) 0 * Os_TE_749802 Os_TE_749798 Chr10 15927710 15927711 - OLO24 345 0.7679 (2263/2947) 0 * * Os_TE_749797 Chr10 15927332 15927133 + COWARD-2 350 0.2409 (711/2952) 1 Intact Os_TE_749796 Os_TE_749796 Chr10 15927132 15927332 - COWARD-3 221 0.2475 (706/2852) 1 Intact Os_TE_749797 Os_TE_749795 Chr10 15926944 15926945 + F118 179 0.7681 (2266/2950) 0 * Os_TE_749794 Os_TE_749794 Chr10 15926937 15926936 - F118 179 0.7509 (2092/2786) 0 * Os_TE_749795 Os_TE_749781 Chr10 15918149 15917805 + NDNA2TNA_OS 346 0.1168 (340/2910) 1 Intact * Os_TE_749772 Chr10 15912538 15912539 + ORSiTERTOOT00296 5553 0.0003 (1/2999) 0 * Os_TE_749771 Os_TE_749771 Chr10 15912534 15912533 - SC-3_LTR 5748 0.0003 (1/2998) 0 * Os_TE_749772 Os_TE_749769 Chr10 15910545 15910546 + MERMITEJ 1498 0.0004 (1/2739) 0 * * Os_TE_749767 Chr10 15910431 15910432 - MERMITEA 1710 0.8963 (2670/2979) 0 * * Os_TE_749764 Chr10 15909405 15909404 + ORSgTEMT01602181 239 0.0641 (188/2935) 0 * Os_TE_749763 Os_TE_749763 Chr10 15909404 15909405 - ORSgTEMT01601432 239 0.0507 (147/2899) 0 * Os_TE_749764 Os_TE_749762 Chr10 15907978 15907979 + MPING 430 0.0003 (1/2992) 0 * Os_TE_749761 Os_TE_749761 Chr10 15907976 15907975 - MPING 430 0.0003 (1/2947) 0 * Os_TE_749762 Os_TE_749760 Chr10 15907763 15907762 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * * Os_TE_749747 Chr10 15903767 15903766 + SZLTR 1249 0.6161 (1666/2704) 0 * * Os_TE_749746 Chr10 15903532 15903141 - DNAUN1_OS 408 0.1283 (343/2673) 1 Intact * Os_TE_749743 Chr10 15903073 15903072 + RPO_OS 1983 0.8722 (2334/2676) 0 * * Os_TE_749741 Chr10 15903035 15903034 - TYPEM 227 0.0930 (215/2313) 0 * Os_TE_749740 Os_TE_749740 Chr10 15903034 15903035 - ORSgTEMT02400246 177 0.1314 (391/2975) 0 * Os_TE_749741 Os_TE_749717 Chr10 15897173 15897172 + STOWAWAY51_OS 246 0.7337 (1942/2647) 0 * * Os_TE_749716 Chr10 15897167 15897168 + ORSgTEMT01601591 242 0.0013 (4/2977) 0 * * Os_TE_749715 Chr10 15897040 15897039 + STOWAWAY9_OS 235 0.7628 (2274/2981) 0 * * Os_TE_749709 Chr10 15892372 15892373 + WUWU 113 0.1303 (371/2848) 0 * * Os_TE_749707 Chr10 15888980 15888981 - SC-8_LTR 4951 0.0003 (1/2991) 0 * Os_TE_749706 Os_TE_749706 Chr10 15888976 15888975 + ORSiTERTOOT00381 4988 0.0010 (3/2991) 0 * Os_TE_749707 Os_TE_749704 Chr10 15886834 15886833 + ORSgTEMT01601488 239 0.1270 (375/2953) 0 * Os_TE_749703 Os_TE_749703 Chr10 15886831 15886832 - ORSgTEMT01601208 238 0.1298 (386/2974) 0 * Os_TE_749704 Os_TE_749699 Chr10 15885281 15885280 - INDITTO 263 0.0007 (2/2990) 0 * * Os_TE_749698 Chr10 15884973 15882168 + ORSgTEMT01400009 212 0.1147 (342/2982) 1 Intact Os_TE_749686 Os_TE_749686 Chr10 15882167 15884973 - ORSgTEMT01400022 212 0.1285 (338/2630) 1 Intact Os_TE_749698 Os_TE_749684 Chr10 15881953 15881952 + ORSgTETNOOT01642 241 0.1271 (376/2959) 0 * * Os_TE_749683 Chr10 15881026 15880686 + ORSgTEMT00100291 345 0.2480 (735/2964) 1 Intact * Os_TE_749678 Chr10 15880589 15880590 + CLOUD-7 495 0.5160 (370/717) 0 * * Os_TE_749676 Chr10 15880532 15880185 + OLO24C 356 0.2569 (696/2709) 1 Intact * Os_TE_749671 Chr10 15880177 15880178 - ORSgTEMT00501204 149 0.7638 (2228/2917) 0 * * Os_TE_749669 Chr10 15877559 15877318 - STOWAWAY51_OS 246 0.1028 (307/2985) 1 Intact Os_TE_749668 Os_TE_749668 Chr10 15877315 15877559 + STOWAWAY51_OS 246 0.1047 (312/2979) 1 Intact Os_TE_749669 Os_TE_749667 Chr10 15877224 15877223 - STOWAWAY51_OS 246 0.0004 (1/2597) 0 * * Os_TE_749664 Chr10 15876917 15876918 - NDNA2TNA_OS 346 0.1301 (389/2991) 0 * * Os_TE_749661 Chr10 15873936 15873937 + ORSgTEMT01400012 212 0.0092 (27/2939) 0 * * Os_TE_749660 Chr10 15873906 15873907 + ORSgTEMT00501504 140 0.1319 (394/2986) 0 * Os_TE_749659 Os_TE_749659 Chr10 15873904 15873903 + ORSgTEMT00502094 140 0.1317 (392/2976) 0 * Os_TE_749660 Os_TE_749658 Chr10 15873710 15873709 + STOWAWAY51_OS 246 0.0101 (30/2966) 0 * Os_TE_749657 Os_TE_749657 Chr10 15873704 15873705 + ORSgTEMT01601591 242 0.0104 (31/2986) 0 * Os_TE_749658 Os_TE_749655 Chr10 15873150 15873151 + ORSgTEMT00501653 149 0.1389 (415/2987) 0 * * Os_TE_749653 Chr10 15871171 15871172 - GAIJIN 147 0.1424 (425/2985) 0 * Os_TE_749652 Os_TE_749652 Chr10 15871170 15871169 + ORSgTEMT00500560 148 0.1418 (423/2983) 0 * Os_TE_749653 Os_TE_749650 Chr10 15870324 15870785 + TNR8-21 428 0.8928 (2574/2883) 1 Intact * Os_TE_749637 Chr10 15860545 15860544 + TRUNCATOR 2918 0.2799 (832/2972) 0 * Os_TE_749636 Os_TE_749636 Chr10 15860544 15860545 - TRUNCATOR 2918 0.2798 (832/2974) 0 * Os_TE_749637 Os_TE_749630 Chr10 15858894 15858893 + ORSgTETNOOT01275 140 0.1320 (396/2999) 0 * * Os_TE_749627 Chr10 15858858 15858859 + ORSgTEMT00901844 250 0.0100 (30/2998) 0 * * Os_TE_749619 Chr10 15856049 15856048 - ORSgTEMT00900563 246 0.1415 (424/2996) 0 * Os_TE_749618 Os_TE_749618 Chr10 15856045 15856046 - ORSgTEMT00900099 250 0.0118 (31/2636) 0 * Os_TE_749619 Os_TE_749616 Chr10 15855365 15854778 - ORSiTETNOOT00200 3563 0.1149 (297/2585) 1 Intact Os_TE_749615 Os_TE_749615 Chr10 15854778 15855363 + TWIF 586 0.1028 (263/2559) 1 Intact Os_TE_749616 Os_TE_749612 Chr10 15854334 15854529 - ORSgTEMT02000040 196 0.1418 (410/2891) 1 Intact * Os_TE_749611 Chr10 15854311 15854312 + MUDRN3_OS 903 0.0565 (169/2990) 0 * Os_TE_749610 Os_TE_749610 Chr10 15854303 15854302 + MUDRN3_OS 903 0.0493 (125/2538) 0 * Os_TE_749611 Os_TE_749589 Chr10 15849857 15849858 - INDITTO 263 0.0007 (2/2983) 0 * * Os_TE_749587 Chr10 15849771 15848346 - ORSgTEMT00900790 250 0.8644 (2582/2987) 1 Intact Os_TE_749578 Os_TE_749578 Chr10 15848344 15849773 - ORSgTEMT00901388 250 0.8635 (2537/2938) 1 Intact Os_TE_749587 Os_TE_749576 Chr10 15847745 15847746 - MuDR4_OS 7610 0.1314 (390/2968) 0 * Os_TE_749575 Os_TE_749575 Chr10 15847739 15847738 - MuDR4_OS 7610 0.1313 (390/2970) 0 * Os_TE_749576 Os_TE_749574 Chr10 15847535 15847187 + STOWAWAY11_OS 292 0.8679 (2562/2952) 1 Intact * Os_TE_749566 Chr10 15845354 15845355 + ORSgTETNOOT02309 137 0.1392 (416/2989) 0 * Os_TE_749565 Os_TE_749565 Chr10 15845351 15845350 + ORSgTEMT00501356 145 0.1419 (424/2988) 0 * Os_TE_749566 Os_TE_749564 Chr10 15845348 15845349 + ORSgTEMT00502327 143 0.1401 (419/2990) 0 * * Os_TE_749558 Chr10 15843118 15842911 - ORSgTEMT01400022 212 0.8606 (2513/2920) 1 Intact Os_TE_749555 Os_TE_749555 Chr10 15842870 15843111 + ORSgTEMT01400018 210 0.8382 (2166/2584) -1 Intact Os_TE_749558 Os_TE_749543 Chr10 15841618 15841420 - ORSgTEMT01400015 213 0.8646 (2566/2968) 1 Intact Os_TE_749540 Os_TE_749540 Chr10 15841369 15841615 - ORSgTEMT01400022 212 0.8657 (2573/2972) 1 Intact Os_TE_749543 Os_TE_749538 Chr10 15840442 15840441 + COPI2_LTR 4733 0.0004 (1/2507) 0 * * Os_TE_749535 Chr10 15839004 15839005 + STOWAWAY15-2_OS 145 0.1374 (401/2918) 0 * * Os_TE_749533 Chr10 15838370 15838371 + ORSgTEMT00500526 152 0.0012 (3/2580) 0 * * Os_TE_749525 Chr10 15837178 15837179 - SZ-28LTR 262 0.1411 (422/2991) 0 * * Os_TE_749495 Chr10 15829609 15829796 - COWARD 200 0.8621 (2544/2951) 1 Intact * Os_TE_749476 Chr10 15815074 15815075 - SC-8_LTR 4951 0.0003 (1/2991) 0 * Os_TE_749475 Os_TE_749475 Chr10 15815070 15815069 + SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_749476 Os_TE_749473 Chr10 15812217 15812216 - STOWAWAY51_OS 246 0.0003 (1/2999) 0 * * Os_TE_749462 Chr10 15809789 15809790 - COPI2_LTR 4733 0.0003 (1/2986) 0 * * Os_TE_749428 Chr10 15797284 15797285 - COPIA2-LTR_OS 6433 0.0003 (1/2961) 0 * * Os_TE_749388 Chr10 15774808 15774809 - TELIA 141 0.0094 (28/2990) 0 * Os_TE_749387 Os_TE_749387 Chr10 15774800 15774799 + TELIA 141 0.0104 (31/2992) 0 * Os_TE_749388 Os_TE_749382 Chr10 15773613 15773612 - MERMITE18E 1528 0.0007 (2/2948) 0 * * Os_TE_749378 Chr10 15772549 15769547 - TRUNCATOR 2918 0.0886 (265/2991) 1 Intact Os_TE_749369 Os_TE_749369 Chr10 15769547 15772545 + TRUNCATOR 2918 0.0888 (266/2995) 1 Intact Os_TE_749378 Os_TE_749367 Chr10 15769471 15768394 + CACTA-H 1152 0.2921 (874/2992) 1 Intact * Os_TE_749357 Chr10 15764625 15764626 + COPIA2-LTR_OS 6433 0.0007 (2/2938) 0 * Os_TE_749356 Os_TE_749356 Chr10 15764621 15764620 - COPIA2-LTR_OS 6433 0.0007 (2/2871) 0 * Os_TE_749357 Os_TE_749355 Chr10 15763899 15763898 - MuDR3_OS 8604 0.0094 (28/2992) 0 * * Os_TE_749354 Chr10 15763787 15763786 - ORSgTEMT01601834 234 0.0108 (32/2976) 0 * Os_TE_749353 Os_TE_749353 Chr10 15763778 15763779 - ORSgTEMT01601696 238 0.0104 (31/2987) 0 * Os_TE_749354 Os_TE_749329 Chr10 15757210 15757209 + F770 284 0.0107 (32/2988) 0 * * Os_TE_749314 Chr10 15749462 15749461 + TRUNCATOR 2918 0.0003 (1/2962) 0 * * Os_TE_749240 Chr10 15697477 15697476 - SZ-54_LTR 5203 0.0017 (5/2999) 0 * * Os_TE_749230 Chr10 15693136 15693137 + ORSiTETNOOT00147 3619 0.0003 (1/2880) 0 * Os_TE_749229 Os_TE_749229 Chr10 15693129 15693128 - ORSiTETNOOT00147 3619 0.0003 (1/2886) 0 * Os_TE_749230 Os_TE_749225 Chr10 15691333 15691334 - STOWAWAY51_OS 246 0.0094 (28/2984) 0 * * Os_TE_749202 Chr10 15675856 15675857 + SC-8_LTR 4951 0.0027 (8/2995) 0 * Os_TE_749201 Os_TE_749201 Chr10 15675852 15675851 - SC-8_LTR 4951 0.0027 (8/2993) 0 * Os_TE_749202 Os_TE_749199 Chr10 15672773 15672774 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_749198 Os_TE_749198 Chr10 15672769 15672768 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_749199 Os_TE_749183 Chr10 15664819 15664820 + COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * * Os_TE_749180 Chr10 15663205 15663206 + RIREX_LTR 8828 0.6020 (1786/2967) 0 * * Os_TE_749130 Chr10 15644501 15644500 + TELIA 141 0.0004 (1/2638) 0 * * Os_TE_749110 Chr10 15636530 15636529 - ORSgTEMT00901327 242 0.0004 (1/2386) 0 * * Os_TE_749106 Chr10 15635135 15635136 + ORSiTERTOOT00296 5553 0.0003 (1/2997) 0 * Os_TE_749105 Os_TE_749105 Chr10 15635131 15635130 - SC-3_LTR 5748 0.0003 (1/2997) 0 * Os_TE_749106 Os_TE_749070 Chr10 15620354 15620355 + RIREX_LTR 8828 0.0135 (40/2968) 0 * Os_TE_749069 Os_TE_749069 Chr10 15620350 15620349 - RIREX_LTR 8828 0.0145 (43/2971) 0 * Os_TE_749070 Os_TE_749002 Chr10 15598463 15598464 + AMYLTP 383 0.0141 (42/2981) 0 * Os_TE_749001 Os_TE_749001 Chr10 15598455 15598454 - AMYLTP 383 0.0137 (41/2983) 0 * Os_TE_749002 Os_TE_749000 Chr10 15598161 15598162 - RIRE2_LTR 11306 0.0007 (2/2988) 0 * * Os_TE_748996 Chr10 15596263 15596262 + ENSPM_OS 9843 0.0003 (1/2977) 0 * * Os_TE_748995 Chr10 15595185 15595186 - TRUNCATOR2_LTR 2904 0.0017 (5/2861) 0 * Os_TE_748994 Os_TE_748994 Chr10 15595181 15595180 + TRUNCATOR2_LTR 2904 0.0017 (5/2867) 0 * Os_TE_748995 Os_TE_748991 Chr10 15592519 15592520 + OSTONOR1_LTR 6440 0.0109 (29/2667) 0 * * Os_TE_748932 Chr10 15557480 15551059 + COPIA2-LTR_OS 6433 0.2574 (758/2945) 1 Intact * Os_TE_748880 Chr10 15535233 15535234 - RETROSAT4_LTR 13504 0.6131 (1745/2846) 0 * * Os_TE_748842 Chr10 15506388 15506387 - RIRE2_LTR 11306 0.0003 (1/2995) 0 * * Os_TE_748821 Chr10 15495124 15495125 - RETROSAT2LTR 12796 0.6423 (1805/2810) 0 * * Os_TE_748756 Chr10 15472383 15472382 - OSTE33 1012 0.0011 (3/2802) 0 * * Os_TE_748748 Chr10 15460692 15460693 - RETROSAT4_LTR 13504 0.0014 (4/2954) 0 * * Os_TE_748726 Chr10 15439848 15439849 - RIREX_LTR 8828 0.0003 (1/2998) 0 * Os_TE_748725 Os_TE_748725 Chr10 15439844 15439843 + RIREX_LTR 8828 0.0003 (1/2997) 0 * Os_TE_748726 Os_TE_748718 Chr10 15435114 15435115 + TRSA_OS 353 0.0004 (1/2779) 0 * * Os_TE_748705 Chr10 15424580 15424581 - MuDR4_OS 7610 0.0005 (1/2195) 0 * * Os_TE_748696 Chr10 15420559 15420560 + SC-7_LTR 4431 0.0003 (1/2993) 0 * Os_TE_748695 Os_TE_748695 Chr10 15420555 15420554 - SC-7_LTR 4431 0.0003 (1/2992) 0 * Os_TE_748696 Os_TE_748689 Chr10 15415374 15415511 + TOS17LTR 138 0.2798 (837/2991) 1 Intact * Os_TE_748673 Chr10 15408185 15408186 + COPI2_LTR 4733 0.0010 (3/2962) 0 * Os_TE_748672 Os_TE_748672 Chr10 15408181 15408180 - COPI2_LTR 4733 0.0010 (3/2969) 0 * Os_TE_748673 Os_TE_748631 Chr10 15394615 15394616 - JOUZHENA 607 0.0017 (5/2973) 0 * * Os_TE_748612 Chr10 15384412 15384413 - ENSPM4_OS 11610 0.5653 (1692/2993) 0 * * Os_TE_748611 Chr10 15383862 15383863 + RIREX_LTR 8828 0.0011 (3/2828) 0 * Os_TE_748610 Os_TE_748610 Chr10 15383858 15383857 - RIREX_LTR 8828 0.0011 (3/2845) 0 * Os_TE_748611 Os_TE_748609 Chr10 15383643 15383642 - ORSgTETNOOT02417 265 0.0004 (1/2736) 0 * * Os_TE_748570 Chr10 15371015 15371014 - TRUNCATOR2_LTR 2904 0.1105 (331/2995) 0 * * Os_TE_748551 Chr10 15359490 15359489 + TWIFBIG 3567 0.1069 (319/2985) 0 * * Os_TE_748535 Chr10 15352293 15352292 + TRUNCATOR2_LTR 2904 0.1065 (318/2986) 0 * * Os_TE_748509 Chr10 15333523 15333522 + ORSiTERTOOT00027 10853 0.0004 (1/2845) 0 * * Os_TE_748502 Chr10 15330970 15330971 - COPI2_LTR 4733 0.0300 (89/2967) 0 * Os_TE_748501 Os_TE_748501 Chr10 15330966 15330965 + COPI2_LTR 4733 0.0279 (83/2977) 0 * Os_TE_748502 Os_TE_748498 Chr10 15326697 15326698 + TWIF 586 0.0003 (1/2964) 0 * Os_TE_748497 Os_TE_748497 Chr10 15326690 15326689 - ORSiTETNOOT00134 607 0.0003 (1/2965) 0 * Os_TE_748498 Os_TE_748493 Chr10 15326267 15326266 + OLO24 345 0.0003 (1/2939) 0 * * Os_TE_748433 Chr10 15299570 15299569 + ORSgTETNOOT00032 218 0.0304 (28/920) 0 * * Os_TE_748411 Chr10 15289206 15289207 - ORSgTETN00200001 10994 0.0010 (1/991) 0 * Os_TE_748410 Os_TE_748410 Chr10 15289204 15289203 + SPMLIKE 10989 0.0273 (28/1025) 0 * Os_TE_748411 Os_TE_748403 Chr10 15288150 15288151 + NDNA2TNA_OS 346 0.0291 (31/1064) 0 * Os_TE_748402 Os_TE_748402 Chr10 15288148 15288147 - NDNA2TNA_OS 346 0.0281 (30/1066) 0 * Os_TE_748403 Os_TE_748400 Chr10 15288073 15288072 + ORSgTEMT00100531 325 0.0096 (10/1046) 0 * * Os_TE_748399 Chr10 15287998 15287999 + NDNA1TNA_OS 334 0.0095 (10/1049) 0 * * Os_TE_748382 Chr10 15270455 15270454 + STOWAWAY11_OS 292 0.0347 (35/1009) 0 * * Os_TE_748374 Chr10 15269348 15269347 - COPIA2-LTR_OS 6433 0.0009 (1/1067) 0 * * Os_TE_748371 Chr10 15265555 15265177 - ORSgTEMT03000049 380 0.8701 (918/1055) 1 Intact * Os_TE_748368 Chr10 15264501 15264129 - TYPEU3 380 0.8712 (913/1048) 1 Intact Os_TE_748366 Os_TE_748366 Chr10 15264123 15264498 + TYPEU3 380 0.8748 (915/1046) 1 Intact Os_TE_748368 Os_TE_748365 Chr10 15263991 15263990 - MERMITE18B 1306 0.0018 (2/1126) 0 * * Os_TE_748363 Chr10 15263504 15263505 - RIREX_LTR 8828 0.0019 (2/1056) 0 * Os_TE_748362 Os_TE_748362 Chr10 15263500 15263499 + RIREX_LTR 8828 0.0010 (1/1051) 0 * Os_TE_748363 Os_TE_748361 Chr10 15262317 15262318 + GYPSIA_LTR 20595 0.1301 (136/1045) 0 * Os_TE_748360 Os_TE_748360 Chr10 15262313 15262312 - GYPSIA_LTR 20595 0.1255 (131/1044) 0 * Os_TE_748361 Os_TE_748355 Chr10 15258760 15258502 + ORSgTETNOOT01128 258 0.8694 (905/1041) 1 Intact Os_TE_748353 Os_TE_748353 Chr10 15258511 15258759 - ORSgTETNOOT00361 249 0.7150 (898/1256) 1 Intact Os_TE_748355 Os_TE_748351 Chr10 15257943 15257944 - MDR2 6967 0.0815 (84/1031) 0 * Os_TE_748350 Os_TE_748350 Chr10 15257934 15257933 + MDR2 6967 0.0949 (99/1043) 0 * Os_TE_748351 Os_TE_748349 Chr10 15257776 15257775 - RIREX_LTR 8828 0.0038 (4/1046) 0 * * Os_TE_748334 Chr10 15251170 15251169 + COPI2_LTR 4733 0.0003 (1/2988) 0 * * Os_TE_748322 Chr10 15244889 15244888 + ORSgTEMT00900266 245 0.6921 (1949/2816) 0 * * Os_TE_748320 Chr10 15244316 15244317 - SZ-62LTR 3649 0.0034 (10/2966) 0 * Os_TE_748319 Os_TE_748319 Chr10 15244312 15244311 + SZ-62LTR 3649 0.0105 (10/949) 0 * Os_TE_748320 Os_TE_748318 Chr10 15244289 15244290 - COPIA2-LTR_OS 6433 0.0017 (5/2994) 0 * * Os_TE_748294 Chr10 15223985 15224267 + ID-4 284 0.3491 (900/2578) 1 Intact * Os_TE_748286 Chr10 15218606 15218605 - ORSgTERT00201216 11284 0.0925 (277/2995) 0 * * Os_TE_748281 Chr10 15215499 15215500 + RIREX_LTR 8828 0.0010 (3/2969) 0 * * Os_TE_748280 Chr10 15214958 15214957 + ORSgTETNOOT00186 139 0.0010 (3/2994) 0 * Os_TE_748279 Os_TE_748279 Chr10 15214953 15214954 - ORSgTEMT00501447 126 0.0010 (3/2995) 0 * Os_TE_748280 Os_TE_748278 Chr10 15214849 15214848 - ORSgTEMT01602413 239 0.0010 (3/2997) 0 * Os_TE_748277 Os_TE_748277 Chr10 15214843 15214844 - ORSgTEMT01602413 239 0.0010 (3/2996) 0 * Os_TE_748278 Os_TE_748271 Chr10 15211966 15211967 - OSTE14 885 0.0806 (93/1154) 0 * * Os_TE_748259 Chr10 15205012 15205013 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_748258 Os_TE_748258 Chr10 15205008 15205007 - COPIA2-LTR_OS 6433 0.0011 (1/910) 0 * Os_TE_748259 Os_TE_748257 Chr10 15204944 15204943 + ORSgTEMT01601488 239 0.0010 (3/2993) 0 * Os_TE_748256 Os_TE_748256 Chr10 15204941 15204942 - ORSgTEMT01601208 238 0.0007 (2/2774) 0 * Os_TE_748257 Os_TE_748245 Chr10 15199302 15199301 - MPING 430 0.0011 (1/906) 0 * * Os_TE_748224 Chr10 15190563 15190564 - SZ-35LTR 3853 0.1213 (362/2985) 0 * Os_TE_748223 Os_TE_748223 Chr10 15190559 15190558 + RETROSAT4_LTR 13504 0.1171 (349/2981) 0 * Os_TE_748224 Os_TE_748214 Chr10 15187560 15187559 + OSTONOR1_LTR 6440 0.0034 (10/2984) 0 * * Os_TE_748209 Chr10 15184102 15184103 - RIREX_LTR 8828 0.0930 (278/2988) 0 * Os_TE_748208 Os_TE_748208 Chr10 15184098 15184097 + RIREX_LTR 8828 0.0862 (256/2970) 0 * Os_TE_748209 Os_TE_748191 Chr10 15172339 15172340 - RETROFIT_LTR 4866 0.0003 (1/2996) 0 * * Os_TE_748186 Chr10 15171874 15172245 - ORSgTEMT03000022 377 0.2913 (871/2990) 1 Intact * Os_TE_748181 Chr10 15171016 15171241 + ORSgTEMT01602669 216 0.3655 (870/2380) 1 Intact * Os_TE_748176 Chr10 15167803 15167802 - COPIA2-LTR_OS 6433 0.0197 (59/2991) 0 * * Os_TE_748174 Chr10 15166761 15166760 + TRUNCATOR 2918 0.0191 (57/2991) 0 * * Os_TE_748172 Chr10 15166609 15166608 + ENSPM4_OS 11610 0.0003 (1/2962) 0 * * Os_TE_748159 Chr10 15165001 15165000 - TRUNCATOR 2918 0.0017 (5/2980) 0 * Os_TE_748158 Os_TE_748158 Chr10 15165000 15165001 + TRUNCATOR 2918 0.0017 (5/2982) 0 * Os_TE_748159 Os_TE_748157 Chr10 15164802 15164803 - SZ-67LTR 1540 0.0017 (5/2976) 0 * * Os_TE_748156 Chr10 15164532 15164531 + SINE03_OS 360 0.1133 (338/2983) 0 * * Os_TE_748151 Chr10 15163769 15163530 - TREP215 239 0.8921 (2662/2984) 1 Intact Os_TE_748148 Os_TE_748148 Chr10 15163529 15163769 + ORSgTEMT01602250 243 0.8923 (2642/2961) 1 Intact Os_TE_748151 Os_TE_748081 Chr10 15140415 15140416 - COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * * Os_TE_748078 Chr10 15138433 15138434 + BUHUI 375 0.6343 (1889/2978) 0 * * Os_TE_748076 Chr10 15138288 15138003 + BUHUI 375 0.3732 (1111/2977) 1 Intact Os_TE_748075 Os_TE_748075 Chr10 15138003 15138288 - ORSgTEMT03800066 376 0.7557 (1157/1531) 1 Intact Os_TE_748076 Os_TE_748073 Chr10 15137132 15128873 + SZ-48LTR 3632 0.3773 (1126/2984) 1 Intact Os_TE_748055 Os_TE_748055 Chr10 15128873 15137132 - SZ-48LTR 3632 0.3803 (1133/2979) 1 Intact Os_TE_748073 Os_TE_748049 Chr10 15123090 15123089 - COPIA2-LTR_OS 6433 0.0003 (1/2966) 0 * * Os_TE_748032 Chr10 15111611 15111828 + ORSgTEMT01602051 240 0.3698 (1103/2983) 1 Intact * Os_TE_748018 Chr10 15107463 15107464 + SPMLIKE 10989 0.0003 (1/2983) 0 * * Os_TE_747990 Chr10 15098159 15095167 + TRUNCATOR 2918 0.2966 (881/2970) 1 Intact * Os_TE_747962 Chr10 15057801 15061609 + SZ-67LTR 1540 0.2927 (876/2993) 1 Solo_LTR * Os_TE_747941 Chr10 15047065 15047066 - RIREX_LTR 8828 0.0010 (3/2925) 0 * Os_TE_747940 Os_TE_747940 Chr10 15047061 15047060 + RIREX_LTR 8828 0.0010 (3/2930) 0 * Os_TE_747941 Os_TE_747919 Chr10 15039668 15039667 - NDNA1TNA_OS 334 0.0591 (172/2912) 0 * * Os_TE_747914 Chr10 15038740 15038741 - SZ-35LTR 3853 0.6605 (1934/2928) 0 * Os_TE_747913 Os_TE_747913 Chr10 15038736 15038735 + RETROSAT4_LTR 13504 0.6430 (1805/2807) 0 * Os_TE_747914 Os_TE_747909 Chr10 15035396 15035397 - ORSiTETNOOT00216 3569 0.0010 (3/2995) 0 * * Os_TE_747891 Chr10 15029012 15029013 + ORSiCMCM00100014 10855 0.0005 (1/2004) 0 * * Os_TE_747879 Chr10 15025158 15025159 - SZ-48LTR 3632 0.0040 (12/2974) 0 * * Os_TE_747872 Chr10 15023924 15023925 + DS-RICE4N 715 0.0041 (12/2942) 0 * * Os_TE_747856 Chr10 15019748 15019749 - NDNA1TNA_OS 334 0.0959 (273/2847) 0 * Os_TE_747855 Os_TE_747855 Chr10 15019746 15019745 + NDNA1TNA_OS 334 0.1026 (294/2865) 0 * Os_TE_747856 Os_TE_747826 Chr10 15009483 15007724 - MERMITEB 1610 0.2982 (888/2978) 1 Intact Os_TE_747822 Os_TE_747822 Chr10 15007722 15009481 + MERMITEB 1610 0.3000 (890/2967) 1 Intact Os_TE_747826 Os_TE_747818 Chr10 15005222 15005223 - RETROSAT4_LTR 13504 0.4046 (1207/2983) 0 * Os_TE_747817 Os_TE_747817 Chr10 15005218 15005217 + RETROSAT4_LTR 13504 0.4041 (1199/2967) 0 * Os_TE_747818 Os_TE_747809 Chr10 15003777 15003776 - COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * * Os_TE_747808 Chr10 15003410 15003409 + SC9A_LTR 5300 0.0050 (15/2990) 0 * * Os_TE_747777 Chr10 14980489 14980490 + COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_747776 Os_TE_747776 Chr10 14980485 14980484 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_747777 Os_TE_747774 Chr10 14979562 14979563 + RIREX_LTR 8828 0.0027 (8/2968) 0 * Os_TE_747773 Os_TE_747773 Chr10 14979558 14979557 - RIREX_LTR 8828 0.0027 (8/2969) 0 * Os_TE_747774 Os_TE_747761 Chr10 14975298 14975297 - RETROSAT2LTR 12796 0.0027 (8/2996) 0 * * Os_TE_747758 Chr10 14975118 14975117 - COPIA2-LTR_OS 6433 0.0007 (2/2997) 0 * * Os_TE_747748 Chr10 14972437 14972438 - SZ-35LTR 3853 0.6814 (2030/2979) 0 * Os_TE_747747 Os_TE_747747 Chr10 14972433 14972432 + RETROSAT4_LTR 13504 0.6353 (1700/2676) 0 * Os_TE_747748 Os_TE_747732 Chr10 14965442 14965443 - ORSgTEMT02400246 177 0.6183 (1845/2984) 0 * * Os_TE_747718 Chr10 14955423 14955424 - SC-8_LTR 4951 0.0003 (1/2994) 0 * Os_TE_747717 Os_TE_747717 Chr10 14955419 14955418 + ORSiTERTOOT00381 4988 0.0003 (1/2993) 0 * Os_TE_747718 Os_TE_747693 Chr10 14941134 14941135 - COPI2_LTR 4733 0.0003 (1/2977) 0 * * Os_TE_747680 Chr10 14938463 14938464 - COPIA2-LTR_OS 6433 0.0003 (1/2924) 0 * Os_TE_747679 Os_TE_747679 Chr10 14938459 14938458 + COPIA2-LTR_OS 6433 0.0003 (1/2933) 0 * Os_TE_747680 Os_TE_747678 Chr10 14938294 14938293 - HELITRON2_OS 15167 0.0003 (1/2915) 0 * Os_TE_747677 Os_TE_747677 Chr10 14938293 14938294 + HELITRON2_OS 15167 0.0003 (1/2906) 0 * Os_TE_747678 Os_TE_747667 Chr10 14927860 14927861 + ORSiTERTOOT00296 5553 0.0003 (1/2997) 0 * Os_TE_747666 Os_TE_747666 Chr10 14927856 14927855 - SC-3_LTR 5748 0.0003 (1/2995) 0 * Os_TE_747667 Os_TE_747656 Chr10 14921983 14921984 + TWIFB1 3737 0.0007 (2/2992) 0 * * Os_TE_747638 Chr10 14915979 14916153 - COWARD 200 0.6671 (1990/2983) 1 Intact * Os_TE_747635 Chr10 14915613 14915444 - F804 170 0.3313 (987/2979) 1 Intact * Os_TE_747631 Chr10 14914674 14914675 + STOWAWAY51_OS 246 0.0007 (2/2978) 0 * Os_TE_747630 Os_TE_747630 Chr10 14914660 14914659 - STOWAWAY51_OS 246 0.0007 (2/2977) 0 * Os_TE_747631 Os_TE_747629 Chr10 14914302 14914303 - ORSgTEMT00901345 248 0.6746 (1980/2935) 0 * * Os_TE_747628 Chr10 14913105 14913106 - STOWAWAY51_OS 246 0.0004 (1/2839) 0 * * Os_TE_747606 Chr10 14886037 14886038 + ORSgTETNOOT02179 137 0.4020 (654/1627) 0 * Os_TE_747605 Os_TE_747605 Chr10 14886032 14886031 + ORSgTEMT00502171 134 0.6711 (1934/2882) 0 * Os_TE_747606 Os_TE_747590 Chr10 14882846 14882847 + OSTE33 1012 0.0017 (5/2966) 0 * * Os_TE_747578 Chr10 14879359 14880899 - RPO_OS 1983 0.4056 (1003/2473) 1 Intact * Os_TE_747576 Chr10 14879152 14879153 - STOWAWAY20_OS 278 0.4042 (1206/2984) 0 * * Os_TE_747575 Chr10 14879147 14879146 - STOWAWAY42_OS 242 0.6751 (1993/2952) 0 * * Os_TE_747574 Chr10 14879146 14879147 - ORSgTEMT01400022 212 0.6683 (1997/2988) 0 * * Os_TE_747572 Chr10 14874419 14874420 - SC-3_LTR 5748 0.0014 (4/2864) 0 * * Os_TE_747570 Chr10 14874392 14874393 - ORSiTETNOOT00134 607 0.0913 (269/2945) 0 * Os_TE_747569 Os_TE_747569 Chr10 14874385 14874384 + TWIF 586 0.0954 (283/2968) 0 * Os_TE_747570 Os_TE_747507 Chr10 14845296 14845297 - NDNA1TNA_OS 334 0.4497 (1333/2964) 0 * * Os_TE_747503 Chr10 14844734 14844735 - ORSgTEMT03000049 380 0.0042 (12/2856) 0 * * Os_TE_747488 Chr10 14843280 14843279 + ORSgTEMT00700017 386 0.0017 (5/2991) 0 * Os_TE_747487 Os_TE_747487 Chr10 14843273 14843274 - ORSgTEMT00700002 381 0.0017 (5/2985) 0 * Os_TE_747488 Os_TE_747484 Chr10 14839670 14839671 + RPO_OS 1983 0.1360 (376/2765) 0 * * Os_TE_747483 Chr10 14839405 14839406 + NDNA1TNA_OS 334 0.0047 (14/2997) 0 * Os_TE_747482 Os_TE_747482 Chr10 14839403 14839402 - NDNA1TNA_OS 334 0.0050 (14/2803) 0 * Os_TE_747483 Os_TE_747464 Chr10 14829807 14829808 + AMYLTP 383 0.0044 (13/2973) 0 * Os_TE_747463 Os_TE_747463 Chr10 14829799 14829798 - AMYLTP 383 0.0044 (13/2974) 0 * Os_TE_747464 Os_TE_747445 Chr10 14823130 14823131 + ORSgTEMT00600502 360 0.0003 (1/2993) 0 * * Os_TE_747443 Chr10 14822636 14822635 - ORSgTERTOOT00002 8476 0.0010 (3/2988) 0 * * Os_TE_747409 Chr10 14797102 14797103 - F569 228 0.6907 (2048/2965) 0 * * Os_TE_747407 Chr10 14795397 14795398 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * * Os_TE_747400 Chr10 14792785 14792786 + SZ-40LTR 2465 0.0166 (49/2956) 0 * Os_TE_747399 Os_TE_747399 Chr10 14792781 14792780 - SZ-40LTR 2465 0.0166 (49/2947) 0 * Os_TE_747400 Os_TE_747383 Chr10 14788051 14788052 + RETROSAT4_LTR 13504 0.0920 (192/2087) 0 * * Os_TE_747352 Chr10 14776307 14776306 - ORSgTEMT00501512 150 0.0243 (59/2426) 0 * * Os_TE_747349 Chr10 14775896 14775897 + ORSgTEMT01400030 214 0.2429 (715/2943) 0 * * Os_TE_747348 Chr10 14775524 14775523 - ORSgTEMT01600768 234 0.2687 (783/2914) 0 * * Os_TE_747340 Chr10 14773709 14773564 - ORSgTEMT01701254 154 0.7267 (2148/2956) 1 Intact * Os_TE_747334 Chr10 14771405 14771404 - INDITTO 263 0.3782 (807/2134) 0 * * Os_TE_747319 Chr10 14766954 14766955 - DNAUN1_OS 408 0.6749 (2001/2965) 0 * * Os_TE_747318 Chr10 14766926 14766927 + COPIA2-LTR_OS 6433 0.0007 (2/2966) 0 * Os_TE_747317 Os_TE_747317 Chr10 14766922 14766921 - COPIA2-LTR_OS 6433 0.0008 (2/2663) 0 * Os_TE_747318 Os_TE_747305 Chr10 14764359 14764358 - COPIA2-LTR_OS 6433 0.0004 (1/2687) 0 * * Os_TE_747269 Chr10 14755012 14755013 + CASTAWAY 364 0.2572 (764/2970) 0 * Os_TE_747268 Os_TE_747268 Chr10 14755011 14755010 - ORSgTEMT00600085 364 0.2567 (762/2968) 0 * Os_TE_747269 Os_TE_747266 Chr10 14753695 14753694 + ORSgTEMT00100291 345 0.0003 (1/2986) 0 * * Os_TE_747260 Chr10 14748970 14748717 - ORSgTETNOOT00754 253 0.4390 (1313/2991) 1 Intact Os_TE_747259 Os_TE_747259 Chr10 14748719 14748970 + ORSgTETNOOT01686 252 0.4386 (1310/2987) 1 Intact Os_TE_747260 Os_TE_747254 Chr10 14746211 14746212 - NDNA1TNA_OS 334 0.0043 (13/2996) 0 * Os_TE_747253 Os_TE_747253 Chr10 14746209 14746208 + NDNA1TNA_OS 334 0.0043 (13/2997) 0 * Os_TE_747254 Os_TE_747252 Chr10 14745096 14745095 + ORSiTERTOOT00295 975 0.0003 (1/2989) 0 * * Os_TE_747228 Chr10 14732998 14732999 + COPI2_LTR 4733 0.0017 (5/2996) 0 * Os_TE_747227 Os_TE_747227 Chr10 14732994 14732993 - COPI2_LTR 4733 0.0017 (5/2997) 0 * Os_TE_747228 Os_TE_747216 Chr10 14730183 14730182 + ORSiTERTOOT00034 791 0.0038 (9/2348) 0 * * Os_TE_747211 Chr10 14725126 14731127 + SZ-4_LTR 5991 0.3133 (936/2988) 1 Intact * Os_TE_747210 Chr10 14724359 14724360 - ORSgTEMT00300141 415 0.0061 (18/2945) 0 * * Os_TE_747202 Chr10 14720892 14720893 + CACTA-I 1124 0.1208 (358/2964) 0 * * Os_TE_747190 Chr10 14715668 14715669 + MERMITEB 1610 0.1252 (373/2979) 0 * Os_TE_747189 Os_TE_747189 Chr10 14715664 14715663 + MERMITEB 1610 0.1180 (350/2965) 0 * Os_TE_747190 Os_TE_747176 Chr10 14710276 14710277 - ORSgTEMT01500001 215 0.1247 (372/2984) 0 * * Os_TE_747170 Chr10 14708609 14708608 + ORSgTEMT00900266 245 0.2035 (374/1838) 0 * Os_TE_747169 Os_TE_747169 Chr10 14708607 14708608 - ORSgTEMT00900145 249 0.1985 (364/1834) 0 * Os_TE_747170 Os_TE_747165 Chr10 14708077 14708078 - TRUNCATOR2_LTR 2904 0.0076 (21/2754) 0 * Os_TE_747164 Os_TE_747164 Chr10 14708073 14708072 + ORSiCMCM00100019 2717 0.0061 (17/2802) 0 * Os_TE_747165 Os_TE_747160 Chr10 14706767 14706768 + TRUNCATOR 2918 0.0091 (21/2309) 0 * * Os_TE_747155 Chr10 14705556 14705557 + OSMU5 4881 0.0053 (16/2997) 0 * * Os_TE_747129 Chr10 14699504 14699503 + TEOS1 476 0.0003 (1/2972) 0 * * Os_TE_747127 Chr10 14698569 14698570 - ORSgTETN00200001 10994 0.0003 (1/2949) 0 * Os_TE_747126 Os_TE_747126 Chr10 14698567 14698566 + SPMLIKE 10989 0.0003 (1/2946) 0 * Os_TE_747127 Os_TE_747119 Chr10 14696090 14696089 + ORSgTEMT00500201 140 0.0003 (1/2993) 0 * * Os_TE_747114 Chr10 14693942 14693941 + RETROSAT4_LTR 13504 0.0007 (2/2796) 0 * * Os_TE_747107 Chr10 14690826 14690827 + COPI2_LTR 4733 0.0003 (1/2984) 0 * Os_TE_747106 Os_TE_747106 Chr10 14690822 14690821 - COPI2_LTR 4733 0.0003 (1/2981) 0 * Os_TE_747107 Os_TE_747104 Chr10 14690497 14690496 + ORSgTEMT00100428 339 0.0003 (1/2972) 0 * * Os_TE_747067 Chr10 14680559 14680560 + JOUZHENA 607 0.0044 (13/2975) 0 * Os_TE_747066 Os_TE_747066 Chr10 14680552 14680551 - JOUZHENA 607 0.0040 (12/2984) 0 * Os_TE_747067 Os_TE_747029 Chr10 14667175 14667176 + ORSiTERT00200076 3543 0.0003 (1/2922) 0 * * Os_TE_747028 Chr10 14666991 14666992 + ORSgTETNOOT00908 242 0.0003 (1/2991) 0 * * Os_TE_747006 Chr10 14662956 14662957 - RIRE3A_LTR 10580 0.0003 (1/2993) 0 * * Os_TE_747001 Chr10 14661568 14661569 + RETRO2_LTR 12874 0.2092 (624/2983) 0 * Os_TE_747000 Os_TE_747000 Chr10 14661564 14661563 - RETRO2_LTR 12874 0.2092 (624/2983) 0 * Os_TE_747001 Os_TE_746964 Chr10 14655005 14655006 - INDITTO 263 0.0003 (1/2972) 0 * Os_TE_746963 Os_TE_746963 Chr10 14655003 14655002 + INDITTO 263 0.0003 (1/2981) 0 * Os_TE_746964 Os_TE_746955 Chr10 14654140 14654141 - COPI2_LTR 4733 0.0003 (1/2965) 0 * * Os_TE_746953 Chr10 14654023 14654024 - STOWAWAY51_OS 246 0.0007 (2/2975) 0 * * Os_TE_746952 Chr10 14651601 14651600 - ORSgTEMT01900024 348 0.0017 (5/2983) 0 * Os_TE_746951 Os_TE_746951 Chr10 14651597 14651598 - ORSgTEMT01900024 348 0.0017 (5/2985) 0 * Os_TE_746952 Os_TE_746902 Chr10 14637391 14637392 - ORSgTETNOOT00374 183 0.0003 (1/2982) 0 * * Os_TE_746899 Chr10 14636961 14636960 - RIREX_LTR 8828 0.0008 (2/2375) 0 * * Os_TE_746855 Chr10 14621340 14621339 + CASTAWAY-3 314 0.0030 (4/1312) 0 * * Os_TE_746843 Chr10 14618725 14618458 + TYPEU3 380 0.6113 (1315/2151) 1 Intact * Os_TE_746840 Chr10 14618155 14618156 + OSTE33 1012 0.0030 (4/1313) 0 * Os_TE_746839 Os_TE_746839 Chr10 14618146 14618145 + OSTE33 1012 0.0038 (5/1314) 0 * Os_TE_746840 Os_TE_746833 Chr10 14614775 14614774 + TRUNCATOR 2918 0.0003 (1/2998) 0 * Os_TE_746832 Os_TE_746832 Chr10 14614774 14614775 - TRUNCATOR 2918 0.0003 (1/2997) 0 * Os_TE_746833 Os_TE_746829 Chr10 14613807 14613808 + RIRE3A_LTR 10580 0.0023 (7/2998) 0 * Os_TE_746828 Os_TE_746828 Chr10 14613803 14613802 - RIRE3A_LTR 10580 0.0027 (8/2996) 0 * Os_TE_746829 Os_TE_746783 Chr10 14598199 14598200 + STOWAWAY51_OS 246 0.0003 (1/2930) 0 * * Os_TE_746751 Chr10 14585661 14585662 - SZ-40LTR 2465 0.0003 (1/2958) 0 * Os_TE_746750 Os_TE_746750 Chr10 14585657 14585656 + GYPSY-A_LTR 8951 0.0003 (1/2933) 0 * Os_TE_746751 Os_TE_746745 Chr10 14584180 14583842 + ORSgTEMT00100531 325 0.3078 (887/2882) 1 Intact * Os_TE_746730 Chr10 14581222 14581223 + QIQI 323 0.0010 (2/1973) 0 * * Os_TE_746672 Chr10 14568884 14568883 - NDNA1TNA_OS 334 0.0003 (1/2972) 0 * * Os_TE_746658 Chr10 14564171 14564172 - ORSgTEMT00600304 361 0.0003 (1/2998) 0 * Os_TE_746657 Os_TE_746657 Chr10 14564168 14564167 - CASTAWAY 364 0.0003 (1/2998) 0 * Os_TE_746658 Os_TE_746656 Chr10 14562540 14562323 - ORSgTEMT02400246 177 0.2860 (855/2990) 1 Intact Os_TE_746655 Os_TE_746655 Chr10 14562316 14562538 + ORSgTEMT02400014 229 0.2866 (856/2987) 1 Intact Os_TE_746656 Os_TE_746642 Chr10 14556822 14556821 + ORSgTETNOOT01313 249 0.0017 (5/2965) 0 * * Os_TE_746625 Chr10 14542297 14542298 - SC-8_LTR 4951 0.0003 (1/2968) 0 * Os_TE_746624 Os_TE_746624 Chr10 14542293 14542292 + SC-8_LTR 4951 0.0003 (1/2968) 0 * Os_TE_746625 Os_TE_746607 Chr10 14532732 14532731 - ORSgTEMT01602413 239 0.0003 (1/2938) 0 * * Os_TE_746564 Chr10 14517583 14517584 - SC-3_LTR 5748 0.0020 (6/2992) 0 * Os_TE_746563 Os_TE_746563 Chr10 14517579 14517578 + ORSiTERTOOT00296 5553 0.0020 (6/2991) 0 * Os_TE_746564 Os_TE_746555 Chr10 14515058 14515059 - SC-3_LTR 5748 0.0003 (1/2986) 0 * Os_TE_746554 Os_TE_746554 Chr10 14515054 14515053 + ORSiTERTOOT00296 5553 0.0003 (1/2988) 0 * Os_TE_746555 Os_TE_746550 Chr10 14512241 14512240 + ORSgTEMT01601122 212 0.8409 (2273/2703) -1 * * Os_TE_746541 Chr10 14508028 14508029 + SC-8_LTR 4951 0.0107 (32/2995) 0 * * Os_TE_746537 Chr10 14505599 14505598 + STOWAWAY51_OS 246 0.0003 (1/2981) 0 * Os_TE_746536 Os_TE_746536 Chr10 14505593 14505594 - STOWAWAY51_OS 246 0.0003 (1/2977) 0 * Os_TE_746537 Os_TE_746515 Chr10 14487652 14487653 + ORSiTERTOOT00296 5553 0.0003 (1/2994) 0 * Os_TE_746514 Os_TE_746514 Chr10 14487648 14487647 - SC-3_LTR 5748 0.0003 (1/2992) 0 * Os_TE_746515 Os_TE_746498 Chr10 14479289 14479288 + ID-4 284 0.6880 (1987/2888) 0 * Os_TE_746497 Os_TE_746497 Chr10 14479288 14479289 + ID-4 284 0.6923 (2014/2909) 0 * Os_TE_746498 Os_TE_746495 Chr10 14478942 14478943 + TWIF 586 0.0003 (1/2949) 0 * Os_TE_746494 Os_TE_746494 Chr10 14478935 14478934 - ORSiTETNOOT00134 607 0.0003 (1/2952) 0 * Os_TE_746495 Os_TE_746491 Chr10 14478348 14478347 + ORSgTEMT01701672 139 0.0077 (23/2991) 0 * Os_TE_746490 Os_TE_746490 Chr10 14478347 14478348 - ORSgTEMT01700977 154 0.0077 (23/2992) 0 * Os_TE_746491 Os_TE_746487 Chr10 14476248 14476247 + SZ-19LTR 1513 0.0003 (1/2986) 0 * * Os_TE_746480 Chr10 14470466 14473117 - EnSpm-10_OS 11265 0.8859 (2648/2989) 1 Intact * Os_TE_746476 Chr10 14469490 14469491 + OSCOPIA2_LTR 5476 0.0003 (1/2915) 0 * * Os_TE_746430 Chr10 14452371 14452372 - NDNA1TNA_OS 334 0.0007 (2/2881) 0 * * Os_TE_746429 Chr10 14452200 14452201 - HARB-1_OS 5166 0.0003 (1/2927) 0 * * Os_TE_746391 Chr10 14431646 14431647 - COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_746390 Os_TE_746390 Chr10 14431642 14431641 + COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_746391 Os_TE_746290 Chr10 14370077 14365302 - MuDR3_OS 8604 0.3220 (945/2935) 1 Intact Os_TE_746287 Os_TE_746287 Chr10 14365298 14370073 + MuDR3_OS 8604 0.3167 (926/2924) 1 Intact Os_TE_746290 Os_TE_746282 Chr10 14363787 14363788 - COPIA2-LTR_OS 6433 0.0007 (2/2962) 0 * Os_TE_746281 Os_TE_746281 Chr10 14363783 14363782 + COPIA2-LTR_OS 6433 0.0007 (2/2990) 0 * Os_TE_746282 Os_TE_746249 Chr10 14350437 14350438 + SC-8_LTR 4951 0.0017 (5/2976) 0 * * Os_TE_746223 Chr10 14340775 14340776 + ORSgTEMT00501329 143 0.0003 (1/2929) 0 * * Os_TE_746204 Chr10 14321120 14321119 + DITTO3 260 0.0003 (1/2996) 0 * * Os_TE_746152 Chr10 14288652 14288322 + ORSgTEMT01900005 333 0.4606 (1011/2195) 1 Intact Os_TE_746150 Os_TE_746150 Chr10 14288312 14288660 - ORSgTEMT01900024 348 0.4430 (1018/2298) 1 Intact Os_TE_746152 Os_TE_746147 Chr10 14287731 14285322 - OSTE33 1012 0.3250 (954/2935) 1 Intact * Os_TE_746143 Chr10 14283853 14283852 + CACTA-N 987 0.6582 (1899/2885) 0 * * Os_TE_746116 Chr10 14262394 14262395 + ORSiTERTOOT00296 5553 0.0013 (4/2987) 0 * Os_TE_746115 Os_TE_746115 Chr10 14262390 14262389 - SC-3_LTR 5748 0.0013 (4/2989) 0 * Os_TE_746116 Os_TE_746110 Chr10 14258768 14258769 - SC-3_LTR 5748 0.0003 (1/2988) 0 * Os_TE_746109 Os_TE_746109 Chr10 14258764 14258763 + ORSiTERTOOT00296 5553 0.0003 (1/2989) 0 * Os_TE_746110 Os_TE_746104 Chr10 14256745 14256744 - ORSgTEMT01701882 154 0.0003 (1/2993) 0 * * Os_TE_746103 Chr10 14255748 14255747 + TWIFB1 3737 0.0052 (14/2699) 0 * * Os_TE_746102 Chr10 14255512 14255513 + MuDR3_OS 8604 0.0256 (46/1797) 0 * * Os_TE_746048 Chr10 14225377 14225376 - RIREX_LTR 8828 0.0003 (1/2994) 0 * * Os_TE_746038 Chr10 14224008 14223861 - ORSgTEMT01702177 127 0.3611 (1059/2933) 1 Intact * Os_TE_746036 Chr10 14223809 14223250 + ORSgTEMT00100011 343 0.7878 (1062/1348) 1 Intact Os_TE_746030 Os_TE_746030 Chr10 14223247 14223806 + ORSgTEMT00100291 345 0.3525 (1050/2979) 1 Intact Os_TE_746036 Os_TE_746025 Chr10 14221875 14221876 + TRUNCATOR2_LTR 2904 0.0159 (47/2958) 0 * Os_TE_746024 Os_TE_746024 Chr10 14221871 14221870 - TRUNCATOR2_LTR 2904 0.0163 (48/2952) 0 * Os_TE_746025 Os_TE_746023 Chr10 14221671 14221672 - MPING 430 0.0003 (1/2974) 0 * Os_TE_746022 Os_TE_746022 Chr10 14221669 14221668 + MPING 430 0.0003 (1/2976) 0 * Os_TE_746023 Os_TE_746018 Chr10 14221215 14221372 - OsSN3 183 0.3505 (1028/2933) 1 Intact * Os_TE_746016 Chr10 14221075 14220723 - CASLET 354 0.3662 (1028/2807) 1 Intact Os_TE_746014 Os_TE_746014 Chr10 14220723 14221075 + CASLET 354 0.4760 (1072/2252) 1 Intact Os_TE_746016 Os_TE_745995 Chr10 14210379 14213926 - SEVERIN-2 1952 0.3407 (1006/2953) 1 Intact * Os_TE_745981 Chr10 14204481 14205675 - SZ-5LTR 1223 0.3558 (1052/2957) 0.94 Intact * Os_TE_745976 Chr10 14202003 14195664 - SZ-30_LTR 6377 0.3546 (1050/2961) 1 Intact Os_TE_745968 Os_TE_745968 Chr10 14195664 14202003 + SZ-30_LTR 6377 0.3512 (1049/2987) 1 Intact Os_TE_745976 Os_TE_745963 Chr10 14193518 14193517 + ORSgTETNOOT00908 242 0.0003 (1/2963) 0 * * Os_TE_745959 Chr10 14192681 14192680 - ORSgTETNOOT00623 140 0.0003 (1/2960) 0 * Os_TE_745958 Os_TE_745958 Chr10 14192680 14192681 + ORSgTEMT00502094 140 0.0007 (2/2959) 0 * Os_TE_745959 Os_TE_745953 Chr10 14191450 14185005 - SZ-6LTR 5035 0.3928 (1075/2737) 1 Intact Os_TE_745942 Os_TE_745942 Chr10 14185005 14191450 + SZ-6LTR 5035 0.3569 (1050/2942) 1 Intact Os_TE_745953 Os_TE_745934 Chr10 14183936 14183935 + NDNA1TNA_OS 334 0.0431 (46/1067) 0 * * Os_TE_745932 Chr10 14183864 14183865 + ORSgTEMT01700513 151 0.0019 (2/1068) 0 * Os_TE_745931 Os_TE_745931 Chr10 14183862 14183861 - ORSgTEMT01700410 135 0.0019 (2/1067) 0 * Os_TE_745932 Os_TE_745930 Chr10 14183629 14183630 + COPIA2-LTR_OS 6433 0.0009 (1/1077) 0 * * Os_TE_745928 Chr10 14182904 14182905 - RETRO2_LTR 12874 0.1008 (298/2956) 0 * Os_TE_745927 Os_TE_745927 Chr10 14182900 14182899 + ORSgTERTOOT00009 12852 0.1008 (298/2955) 0 * Os_TE_745928 Os_TE_745926 Chr10 14182648 14182647 + MERMITE18D 1491 0.0003 (1/2950) 0 * * Os_TE_745925 Chr10 14181277 14181276 - TAMI2 254 0.6479 (1825/2817) 0 * * Os_TE_745924 Chr10 14181270 14181269 - COPIA2-LTR_OS 6433 0.0004 (1/2822) 0 * * Os_TE_745923 Chr10 14181268 14181269 - TAMI2 254 0.6672 (1961/2939) 0 * Os_TE_745922 Os_TE_745922 Chr10 14181264 14181263 + TAMI2 254 0.6475 (1813/2800) 0 * Os_TE_745923 Os_TE_745920 Chr10 14180770 14180769 + ORSgTEMT00502171 134 0.6749 (1941/2876) 0 * * Os_TE_745914 Chr10 14180272 14180605 + NDNA1TNA_OS 334 0.3404 (1002/2944) 1 Intact * Os_TE_745900 Chr10 14176547 14176546 - ORSgTEMT00101174 225 0.0007 (2/2872) 0 * * Os_TE_745898 Chr10 14175763 14175762 + ORSgTEMT00900105 238 0.6791 (1479/2178) 0 * * Os_TE_745868 Chr10 14148942 14148943 - BAJIELTR 4500 0.0004 (1/2645) 0 * * Os_TE_745860 Chr10 14143082 14143083 + HARB-1_OS 5166 0.0412 (123/2982) 0 * Os_TE_745859 Os_TE_745859 Chr10 14143080 14143079 - HARB-1_OS 5166 0.0430 (128/2980) 0 * Os_TE_745860 Os_TE_745833 Chr10 14125574 14125575 - EXPLORER 210 0.5780 (1371/2372) 0 * Os_TE_745832 Os_TE_745832 Chr10 14125573 14125572 + EXPLORER 210 0.6719 (1993/2966) 0 * Os_TE_745833 Os_TE_745828 Chr10 14124978 14124979 - CACTA-H 1152 0.4640 (876/1888) 0 * * Os_TE_745821 Chr10 14122413 14122414 - ORSiTERTOOT00392 5205 0.0007 (2/2987) 0 * Os_TE_745820 Os_TE_745820 Chr10 14122409 14122408 + ORSiTERTOOT00392 5205 0.0007 (2/2985) 0 * Os_TE_745821 Os_TE_745819 Chr10 14122032 14122033 + COPIA1-LTR_OS 9292 0.0007 (2/2993) 0 * * Os_TE_745816 Chr10 14121598 14121449 + STOWAWAY1_OS 149 0.3359 (1004/2989) 1 Intact * Os_TE_745809 Chr10 14119800 14119801 + ORSgTETN00200005 1121 0.0017 (5/2985) 0 * * Os_TE_745802 Chr10 14116343 14116344 - ORSiTERTOOT00385 6000 0.0007 (2/2978) 0 * * Os_TE_745800 Chr10 14115749 14111751 + SZ-43LTR 4039 0.3293 (983/2985) 1 Intact Os_TE_745797 Os_TE_745797 Chr10 14111751 14115749 - SZ-43LTR 4039 0.3318 (992/2990) 1 Intact Os_TE_745800 Os_TE_745791 Chr10 14108960 14108961 - ORSgTEMT01400006 213 0.0021 (6/2859) 0 * * Os_TE_745790 Chr10 14108788 14108787 + ORSgTEMT01400031 216 0.6725 (1973/2934) 0 * * Os_TE_745761 Chr10 14087001 14087000 + ORSgTEMT01602181 239 0.1153 (330/2862) 0 * Os_TE_745760 Os_TE_745760 Chr10 14086998 14086999 + ORSgTEMT01601983 238 0.1238 (358/2892) 0 * Os_TE_745761 Os_TE_745746 Chr10 14076559 14077781 - SZ-5LTR 1223 0.3357 (1005/2994) 1 Intact * Os_TE_745740 Chr10 14073677 14073296 + F524 291 0.3326 (992/2983) 1 Intact * Os_TE_745735 Chr10 14072739 14072738 - COPI2_LTR 4733 0.0003 (1/2995) 0 * * Os_TE_745734 Chr10 14071989 14071669 + ORSgTEMT00100531 325 0.4072 (998/2451) 1 Intact Os_TE_745732 Os_TE_745732 Chr10 14071654 14071987 + NDNA1TNA_OS 334 0.4091 (1002/2449) 1 Intact Os_TE_745734 Os_TE_745726 Chr10 14069622 14069621 + CACTA-H 1152 0.0007 (2/2692) 0 * * Os_TE_745724 Chr10 14068483 14068484 + SEVERIN-2 1952 0.1061 (314/2960) 0 * * Os_TE_745723 Chr10 14068475 14068476 - COPIA2-LTR_OS 6433 0.0017 (5/2972) 0 * Os_TE_745722 Os_TE_745722 Chr10 14068471 14068470 + COPIA2-LTR_OS 6433 0.0019 (5/2667) 0 * Os_TE_745723 Os_TE_745721 Chr10 14068339 14068340 - TYPEG 427 0.0040 (4/1012) 0 * * Os_TE_745719 Chr10 14068196 14068195 + SZ-30_LTR 6377 0.0014 (4/2916) 0 * * Os_TE_745716 Chr10 14067498 14067497 + ORSgTEMT01601122 212 0.6717 (1985/2955) 0 * * Os_TE_745712 Chr10 14066956 14067138 + ORSgTEMT01601122 212 0.5363 (1013/1889) 1 Intact * Os_TE_745711 Chr10 14066935 14066934 - TYPEM 227 0.5539 (1229/2219) 0 * Os_TE_745710 Os_TE_745710 Chr10 14066921 14066922 - ORSgTEMT02400246 177 0.6504 (1818/2795) 0 * Os_TE_745711 Os_TE_745706 Chr10 14065842 14066021 + ORSiOTOT00000037 220 0.3260 (961/2948) 1 Intact * Os_TE_745705 Chr10 14065638 14065402 - ORSgTEMT01601432 239 0.3236 (958/2960) 1 Intact Os_TE_745703 Os_TE_745703 Chr10 14065402 14065638 + ORSgTEMT01602181 239 0.3183 (932/2928) 1 Intact Os_TE_745705 Os_TE_745693 Chr10 14061111 14061110 - STOWAWAY12_OS 312 0.0014 (4/2867) 0 * * Os_TE_745682 Chr10 14059751 14059750 + ORSgTEMT00100828 349 0.0007 (2/2997) 0 * * Os_TE_745677 Chr10 14058241 14056605 + MERMITEB 1610 0.3312 (987/2980) 1 Intact Os_TE_745676 Os_TE_745676 Chr10 14056605 14058240 + MERMITEB 1610 0.3312 (990/2989) 1 Intact Os_TE_745677 Os_TE_745664 Chr10 14044892 14044134 - GLUTEL1LIKE 273 0.4139 (978/2363) 1 Intact * Os_TE_745658 Chr10 14042541 14042321 + ORSgTEMT01602119 229 0.3170 (921/2905) 1 Intact Os_TE_745656 Os_TE_745656 Chr10 14042303 14042541 - ORSgTEMT01602413 239 0.3302 (972/2944) 1 Intact Os_TE_745658 Os_TE_745655 Chr10 14041905 14041906 + SPMLIKE 10989 0.0029 (5/1754) 0 * Os_TE_745654 Os_TE_745654 Chr10 14041903 14041902 - ORSgTETN00200001 10994 0.0014 (4/2946) 0 * Os_TE_745655 Os_TE_745650 Chr10 14041135 14041288 - ORSgTEMT01700159 154 0.3395 (994/2928) 1 Intact * Os_TE_745644 Chr10 14038391 14038390 - ORSgTEMT01601493 303 0.6689 (1954/2921) 0 * Os_TE_745643 Os_TE_745643 Chr10 14038388 14038389 + ORSgTEMT01602609 233 0.6729 (1987/2953) 0 * Os_TE_745644 Os_TE_745637 Chr10 14036526 14036527 - ORSiTERT00100080 6173 0.6790 (2031/2991) 0 * Os_TE_745636 Os_TE_745636 Chr10 14036521 14036520 + ORSiTERT00100080 6173 0.6769 (2022/2987) 0 * Os_TE_745637 Os_TE_745635 Chr10 14036129 14036130 - GYPSY1-LTR_OS 8900 0.6719 (2003/2981) 0 * Os_TE_745634 Os_TE_745634 Chr10 14036125 14036124 + GYPSY1-LTR_OS 8900 0.6607 (1912/2894) 0 * Os_TE_745635 Os_TE_745633 Chr10 14034534 14034533 - ORSiTERTOOT00036 328 0.0020 (2/1019) 0 * * Os_TE_745610 Chr10 14024327 14024328 - LINE-7_OS 7090 0.6576 (1886/2868) 0 * * Os_TE_745601 Chr10 14019248 14019249 + GYPSIA_LTR 20595 0.6798 (2025/2979) 0 * Os_TE_745600 Os_TE_745600 Chr10 14019244 14019243 - GYPSIA_LTR 20595 0.6507 (1816/2791) 0 * Os_TE_745601 Os_TE_745588 Chr10 14016024 14016025 + SZ-9LTR 965 0.0035 (9/2575) 0 * Os_TE_745587 Os_TE_745587 Chr10 14016020 14016019 - SZ-9LTR 965 0.0035 (10/2877) 0 * Os_TE_745588 Os_TE_745586 Chr10 14015944 14015943 - ENSPM4_OS 11610 0.3214 (737/2293) 0 * * Os_TE_745583 Chr10 14015254 14015253 + RIREX_LTR 8828 0.1969 (321/1630) 0 * * Os_TE_745529 Chr10 13991849 13991848 + COPIA2-LTR_OS 6433 0.0007 (2/2976) 0 * * Os_TE_745496 Chr10 13983218 13983219 - SZ-5LTR 1223 0.0017 (5/2981) 0 * Os_TE_745495 Os_TE_745495 Chr10 13983214 13983213 + COPIA1-LTR_OS 9292 0.0017 (5/2983) 0 * Os_TE_745496 Os_TE_745482 Chr10 13977478 13977479 + YOUREN 286 0.0010 (3/2986) 0 * * Os_TE_745479 Chr10 13976232 13976231 + ORSgTEMT01701115 144 0.0013 (4/2977) 0 * Os_TE_745478 Os_TE_745478 Chr10 13976229 13976230 + ORSgTEMT01701115 144 0.0017 (5/2981) 0 * Os_TE_745479 Os_TE_745462 Chr10 13963834 13963835 + ORSiTERTOOT00226 792 0.0003 (1/2969) 0 * * Os_TE_745443 Chr10 13958549 13958423 - ORSgTEMT00500471 125 0.3337 (996/2985) 1 Intact Os_TE_745441 Os_TE_745441 Chr10 13958423 13958543 - ORSgTETNOOT02572 134 0.3358 (1003/2987) 1 Intact Os_TE_745443 Os_TE_745426 Chr10 13951370 13951217 + ORSgTEMT01701663 106 0.3450 (1006/2916) 1 Intact Os_TE_745424 Os_TE_745424 Chr10 13951220 13951370 + ORSgTEMT01701815 151 0.3388 (999/2949) 1 Intact Os_TE_745426 Os_TE_745372 Chr10 13912089 13912090 + ORSgTEMT01601122 212 0.0024 (7/2955) 0 * * Os_TE_745357 Chr10 13910480 13910481 - COPIA2-LTR_OS 6433 0.0017 (5/2958) 0 * Os_TE_745356 Os_TE_745356 Chr10 13910476 13910475 + COPIA2-LTR_OS 6433 0.0014 (4/2959) 0 * Os_TE_745357 Os_TE_745305 Chr10 13891435 13891436 - RIREX_LTR 8828 0.0003 (1/2974) 0 * Os_TE_745304 Os_TE_745304 Chr10 13891434 13891433 + RIREX_LTR 8828 0.0007 (1/1525) 0 * Os_TE_745305 Os_TE_745297 Chr10 13890080 13890081 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * * Os_TE_745273 Chr10 13878930 13878929 - ORSgTEMT00501447 126 0.0007 (2/2981) 0 * * Os_TE_745265 Chr10 13876218 13876219 + COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * * Os_TE_745244 Chr10 13864651 13864650 - RIREX_LTR 8828 0.0003 (1/2980) 0 * * Os_TE_745239 Chr10 13860939 13860940 - SZ-22_LTR 4403 0.0003 (1/2999) 0 * * Os_TE_745204 Chr10 13853574 13853573 + TELIA 141 0.0015 (4/2706) 0 * * Os_TE_745203 Chr10 13852817 13852818 + COPIA2-LTR_OS 6433 0.0007 (2/2980) 0 * Os_TE_745202 Os_TE_745202 Chr10 13852813 13852812 - COPIA2-LTR_OS 6433 0.0007 (2/2979) 0 * Os_TE_745203 Os_TE_745170 Chr10 13828107 13828108 - SC-8_LTR 4951 0.0003 (1/2886) 0 * Os_TE_745169 Os_TE_745169 Chr10 13828103 13828102 + SC-8_LTR 4951 0.0003 (1/2893) 0 * Os_TE_745170 Os_TE_745161 Chr10 13823520 13823519 + ORSgTEMT02400034 225 0.0007 (2/2954) 0 * Os_TE_745160 Os_TE_745160 Chr10 13823517 13823518 - ORSgTEMT02400179 221 0.0007 (2/2867) 0 * Os_TE_745161 Os_TE_745156 Chr10 13820661 13820662 + ORSgTETNOOT00908 242 0.0007 (2/2990) 0 * * Os_TE_745154 Chr10 13820377 13820376 - STOWAWAY51_OS 246 0.0080 (24/2985) 0 * Os_TE_745153 Os_TE_745153 Chr10 13820374 13820375 - STOWAWAY51_OS 246 0.0084 (25/2979) 0 * Os_TE_745154 Os_TE_745106 Chr10 13804702 13804703 - TYPEM 227 0.0808 (235/2910) 0 * Os_TE_745105 Os_TE_745105 Chr10 13804701 13804700 - ORSgTEMT02400179 221 0.0792 (229/2891) 0 * Os_TE_745106 Os_TE_745091 Chr10 13801413 13801414 + MPING 430 0.0023 (7/2992) 0 * Os_TE_745090 Os_TE_745090 Chr10 13801411 13801410 - MPING 430 0.0023 (7/2991) 0 * Os_TE_745091 Os_TE_745087 Chr10 13800732 13800731 + STOWAWAY51_OS 246 0.0479 (143/2985) 0 * Os_TE_745086 Os_TE_745086 Chr10 13800726 13800727 - STOWAWAY51_OS 246 0.0466 (139/2983) 0 * Os_TE_745087 Os_TE_745062 Chr10 13787898 13787899 - COPI2_LTR 4733 0.0645 (179/2775) 0 * Os_TE_745061 Os_TE_745061 Chr10 13787894 13787893 + COPI2_LTR 4733 0.0705 (197/2795) 0 * Os_TE_745062 Os_TE_745025 Chr10 13774444 13774445 - INDITTO 263 0.0027 (8/2986) 0 * * Os_TE_745016 Chr10 13770783 13770782 + ORSgTETNOOT00906 136 0.0003 (1/2996) 0 * * Os_TE_745000 Chr10 13765961 13765960 - OSTE1 801 0.0007 (2/2982) 0 * * Os_TE_744971 Chr10 13748365 13748366 - COPIA2-LTR_OS 6433 0.0003 (1/2980) 0 * * Os_TE_744952 Chr10 13743113 13743112 - SPMLIKE 10989 0.0020 (6/2955) 0 * * Os_TE_744944 Chr10 13740205 13740206 + TRUNCATOR2_LTR 2904 0.0027 (8/2977) 0 * Os_TE_744943 Os_TE_744943 Chr10 13740201 13740200 - TRUNCATOR2_LTR 2904 0.0024 (7/2976) 0 * Os_TE_744944 Os_TE_744894 Chr10 13726777 13726778 - ORSgTETNOOT01053 196 0.0010 (3/2959) 0 * * Os_TE_744831 Chr10 13705782 13705781 + ORSgTEMT00200186 144 0.0003 (1/2950) 0 * * Os_TE_744805 Chr10 13700169 13699907 - INDITTO 263 0.1408 (421/2990) 1 Intact Os_TE_744804 Os_TE_744804 Chr10 13699907 13700169 + ORSgTETNOOT02316 263 0.1412 (420/2975) 1 Intact Os_TE_744805 Os_TE_744798 Chr10 13699343 13699099 - STOWAWAY41_OS 264 0.3202 (422/1318) 1 Intact * Os_TE_744734 Chr10 13673008 13665722 - OSTE33 1012 0.2542 (405/1593) 1 Intact * Os_TE_744730 Chr10 13665728 13665729 + ORSgTEMT00501455 153 0.0169 (7/415) 0 * * Os_TE_744729 Chr10 13665722 13673008 - OSTE33 1012 0.2524 (402/1593) 1 Intact * Os_TE_744728 Chr10 13662211 13662212 + ENSPM4_OS 11610 0.0822 (81/986) 0 * * Os_TE_744727 Chr10 13662111 13662112 - TRUNCATOR2_LTR 2904 0.1806 (486/2691) 0 * Os_TE_744726 Os_TE_744726 Chr10 13662107 13662106 + ORSiCMCM00100019 2717 0.1843 (495/2686) 0 * Os_TE_744727 Os_TE_744707 Chr10 13660695 13660696 - ORSiTETNOOT00216 3569 0.0047 (12/2539) 0 * Os_TE_744706 Os_TE_744706 Chr10 13660688 13660687 + TWIFBIG 3567 0.0282 (68/2411) 0 * Os_TE_744707 Os_TE_744705 Chr10 13660679 13660680 - OSTE20 496 0.0008 (2/2477) 0 * Os_TE_744704 Os_TE_744704 Chr10 13660675 13660674 - OSTE20 496 0.0026 (6/2293) 0 * Os_TE_744705 Os_TE_744703 Chr10 13660364 13660365 - TRUNCATOR 2918 0.0022 (2/889) 0 * * Os_TE_744701 Chr10 13658117 13658118 + COPI2_LTR 4733 0.1591 (473/2973) 0 * Os_TE_744700 Os_TE_744700 Chr10 13658113 13658112 - COPI2_LTR 4733 0.1651 (493/2986) 0 * Os_TE_744701 Os_TE_744696 Chr10 13657624 13657625 + INDITTO 263 0.0131 (38/2894) 0 * Os_TE_744695 Os_TE_744695 Chr10 13657622 13657621 - INDITTO 263 0.0132 (38/2886) 0 * Os_TE_744696 Os_TE_744676 Chr10 13645345 13645346 - AMYLTP 383 0.0313 (88/2808) 0 * Os_TE_744675 Os_TE_744675 Chr10 13645337 13645336 + AMYLTP 383 0.0298 (86/2884) 0 * Os_TE_744676 Os_TE_744671 Chr10 13644316 13644317 + SPMLIKE 10989 0.0007 (2/2977) 0 * Os_TE_744670 Os_TE_744670 Chr10 13644314 13644313 - ORSgTETN00200001 10994 0.0007 (2/2979) 0 * Os_TE_744671 Os_TE_744641 Chr10 13637961 13637962 - SC-8_LTR 4951 0.0013 (4/2985) 0 * Os_TE_744640 Os_TE_744640 Chr10 13637957 13637956 + SC-8_LTR 4951 0.0013 (4/2974) 0 * Os_TE_744641 Os_TE_744572 Chr10 13627642 13627641 + ORSgTETNOOT01834 251 0.0003 (1/2998) 0 * * Os_TE_744545 Chr10 13619557 13619558 - RETROSAT2LTR 12796 0.0188 (56/2986) 0 * Os_TE_744544 Os_TE_744544 Chr10 13619555 13619554 + RETROSAT2LTR 12796 0.0174 (52/2987) 0 * Os_TE_744545 Os_TE_744432 Chr10 13558152 13558153 + RIRE3A_LTR 10580 0.0003 (1/2866) 0 * * Os_TE_744423 Chr10 13550192 13550193 + ORSiTERTOOT00296 5553 0.0003 (1/2992) 0 * Os_TE_744422 Os_TE_744422 Chr10 13550188 13550187 - SC-3_LTR 5748 0.0003 (1/2989) 0 * Os_TE_744423 Os_TE_744418 Chr10 13545771 13545770 + ORSiTERTOOT00296 5553 0.0060 (18/2981) 0 * * Os_TE_744417 Chr10 13545233 13545234 - SC-3_LTR 5748 0.0124 (37/2994) 0 * Os_TE_744416 Os_TE_744416 Chr10 13545229 13545228 + ORSiTERTOOT00296 5553 0.0120 (36/2989) 0 * Os_TE_744417 Os_TE_744372 Chr10 13530664 13530665 - RETROSAT2LTR 12796 0.0004 (1/2591) 0 * * Os_TE_744362 Chr10 13528579 13528578 - CACTA-I 1124 0.0162 (48/2957) 0 * Os_TE_744361 Os_TE_744361 Chr10 13528578 13528579 + CACTA-D 1038 0.0156 (46/2950) 0 * Os_TE_744362 Os_TE_744342 Chr10 13522455 13522456 - ENSPM4_OS 11610 0.6941 (2074/2988) 0 * * Os_TE_744336 Chr10 13521034 13521035 + SPMLIKE 10989 0.0124 (37/2979) 0 * Os_TE_744335 Os_TE_744335 Chr10 13521032 13521031 - ORSgTETN00200001 10994 0.0154 (46/2983) 0 * Os_TE_744336 Os_TE_744228 Chr10 13471153 13471152 - RIREX_LTR 8828 0.0097 (29/2994) 0 * * Os_TE_744213 Chr10 13464915 13464914 + RPO_OS 1983 0.0010 (3/2990) 0 * Os_TE_744212 Os_TE_744212 Chr10 13464914 13464915 - RPO_OS 1983 0.0017 (5/2985) 0 * Os_TE_744213 Os_TE_744206 Chr10 13461422 13451856 + ENSPM5_OS 9581 0.1268 (352/2775) 1 Intact Os_TE_744203 Os_TE_744203 Chr10 13451775 13461422 - ENSPM6_OS 9815 0.1962 (572/2916) 1 Intact Os_TE_744206 Os_TE_744199 Chr10 13448245 13448246 + COPI2_LTR 4733 0.0003 (1/2934) 0 * Os_TE_744198 Os_TE_744198 Chr10 13448241 13448240 - COPI2_LTR 4733 0.0003 (1/2945) 0 * Os_TE_744199 Os_TE_744170 Chr10 13438753 13438752 - RIREX_LTR 8828 0.0003 (1/2997) 0 * * Os_TE_744087 Chr10 13403472 13403471 + ORSgTEMT01700768 151 0.5359 (418/780) 0 * * Os_TE_744071 Chr10 13390048 13390049 + SPMLIKE 10989 0.0195 (56/2879) 0 * Os_TE_744070 Os_TE_744070 Chr10 13390046 13390045 - ORSgTETN00200001 10994 0.0205 (59/2880) 0 * Os_TE_744071 Os_TE_744068 Chr10 13389884 13389885 + F524 291 0.0004 (1/2841) 0 * * Os_TE_744061 Chr10 13384746 13384747 + RIREX_LTR 8828 0.0017 (5/2976) 0 * Os_TE_744060 Os_TE_744060 Chr10 13384742 13384741 - RIREX_LTR 8828 0.0017 (5/2972) 0 * Os_TE_744061 Os_TE_744027 Chr10 13373536 13372366 + CACTA-B 1103 0.2027 (607/2995) 1 Intact Os_TE_744026 Os_TE_744026 Chr10 13372364 13373533 + ORSgTETN00200005 1121 0.2023 (606/2995) 1 Intact Os_TE_744027 Os_TE_743997 Chr10 13364945 13364946 + TRUNCATOR 2918 0.0017 (5/2967) 0 * * Os_TE_743899 Chr10 13312638 13312637 + TRUNCATOR 2918 0.4536 (1355/2987) 0 * Os_TE_743898 Os_TE_743898 Chr10 13312637 13312638 - TRUNCATOR 2918 0.4126 (1170/2836) 0 * Os_TE_743899 Os_TE_743880 Chr10 13305176 13305175 + ORSiTERTOOT00226 792 0.0010 (3/2991) 0 * * Os_TE_743879 Chr10 13305151 13305150 + ORSgTETN00200005 1121 0.0411 (123/2993) 0 * Os_TE_743878 Os_TE_743878 Chr10 13305150 13305151 + CACTA-H 1152 0.0408 (122/2990) 0 * Os_TE_743879 Os_TE_743855 Chr10 13293367 13293368 - COPI2_LTR 4733 0.0007 (2/2989) 0 * Os_TE_743854 Os_TE_743854 Chr10 13293363 13293362 + COPI2_LTR 4733 0.0010 (3/2985) 0 * Os_TE_743855 Os_TE_743803 Chr10 13270505 13270506 - DS-RICE2N 613 0.2048 (591/2886) 0 * Os_TE_743802 Os_TE_743802 Chr10 13270498 13270497 + DS-RICE2N 613 0.2364 (706/2987) 0 * Os_TE_743803 Os_TE_743801 Chr10 13270389 13270388 - ORSgTETN00200001 10994 0.2145 (622/2900) 0 * * Os_TE_743792 Chr10 13263399 13263400 - RETRO2_LTR 12874 0.0437 (131/2995) 0 * * Os_TE_743773 Chr10 13247253 13247254 + SC-8_LTR 4951 0.0003 (1/2981) 0 * Os_TE_743772 Os_TE_743772 Chr10 13247249 13247248 - SC-8_LTR 4951 0.0003 (1/2979) 0 * Os_TE_743773 Os_TE_743751 Chr10 13231897 13231898 + COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * Os_TE_743750 Os_TE_743750 Chr10 13231893 13231892 - COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_743751 Os_TE_743715 Chr10 13217393 13217394 + RIREX_LTR 8828 0.0007 (2/2966) 0 * Os_TE_743714 Os_TE_743714 Chr10 13217389 13217388 - RIREX_LTR 8828 0.0007 (2/2980) 0 * Os_TE_743715 Os_TE_743705 Chr10 13214539 13214538 - COPI2_LTR 4733 0.0003 (1/2984) 0 * * Os_TE_743620 Chr10 13170282 13170281 + ENSPM6_OS 9815 0.0017 (5/2983) 0 * * Os_TE_743574 Chr10 13155156 13155157 - INDITTO 263 0.0003 (1/2969) 0 * * Os_TE_743534 Chr10 13143714 13143713 + COPIA2-LTR_OS 6433 0.0003 (1/2899) 0 * * Os_TE_743520 Chr10 13139222 13139223 - ORSgTEMT00502287 149 0.2337 (694/2970) 0 * * Os_TE_743519 Chr10 13138517 13138271 + ORSgTEMT01400032 215 0.7783 (2282/2932) 1 Intact Os_TE_743517 Os_TE_743517 Chr10 13138271 13138485 + ORSgTEMT01400032 215 0.7796 (2306/2958) 1 Intact Os_TE_743519 Os_TE_743515 Chr10 13137943 13137944 + ORSgTEMT01400012 212 0.2120 (618/2915) 0 * * Os_TE_743512 Chr10 13135935 13135934 - ORSgTEMT01601696 238 0.0813 (207/2547) 0 * * Os_TE_743511 Chr10 13135502 13135503 - ORMOSIA 482 0.2322 (692/2980) 0 * * Os_TE_743488 Chr10 13127211 13127212 + SEVERIN-2 1952 0.0026 (6/2318) 0 * * Os_TE_743479 Chr10 13124778 13124779 + SETARIA 1402 0.0048 (9/1866) 0 * Os_TE_743478 Os_TE_743478 Chr10 13124772 13124771 + SETARIA2 1142 0.3266 (875/2679) 0 * Os_TE_743479 Os_TE_743456 Chr10 13121517 13121518 + RETROSAT2LTR 12796 0.2291 (410/1790) 0 * * Os_TE_743452 Chr10 13120666 13119342 - MERMITE18C 1473 0.6146 (1824/2968) 1 Intact Os_TE_743450 Os_TE_743450 Chr10 13119340 13120666 + MERMITE18C 1473 0.6192 (1805/2915) 1 Intact Os_TE_743452 Os_TE_743443 Chr10 13113224 13113225 - SC-3_LTR 5748 0.0003 (1/2998) 0 * Os_TE_743442 Os_TE_743442 Chr10 13113220 13113219 + ORSiTERTOOT00296 5553 0.0003 (1/2999) 0 * Os_TE_743443 Os_TE_743439 Chr10 13112028 13110199 - MERMITE18E 1528 0.7899 (1756/2223) 1 Intact Os_TE_743436 Os_TE_743436 Chr10 13110199 13164741 + MERMITE18E 1528 0.5957 (1731/2906) 1 Intact Os_TE_743439 Os_TE_743410 Chr10 13102116 13102115 + SPMLIKE 10989 0.1460 (437/2993) 0 * * Os_TE_743394 Chr10 13087232 13087231 - ORSgTEMT02400246 177 0.0004 (1/2406) 0 * * Os_TE_743344 Chr10 13075242 13075243 - COPI2_LTR 4733 0.0003 (1/2988) 0 * * Os_TE_743335 Chr10 13072936 13072935 - ORSgTEMT01601521 234 0.6689 (1792/2679) 0.75 * * Os_TE_743323 Chr10 13070905 13070906 + SPMLIKE 10989 0.0021 (6/2915) 0 * * Os_TE_743321 Chr10 13070883 13070882 + COPI2_LTR 4733 0.0007 (2/2915) 0 * * Os_TE_743310 Chr10 13067483 13067484 + ORSgTEMT00901798 232 0.0007 (2/2902) 0 * * Os_TE_743300 Chr10 13066803 13066804 + ORSgTETNOOT00309 256 0.0003 (1/2866) 0 * * Os_TE_743294 Chr10 13065344 13065345 + ORSgTETNOOT00908 242 0.0004 (1/2821) 0 * * Os_TE_743266 Chr10 13054988 13054989 - COPI2_LTR 4733 0.0005 (1/2066) 0 * * Os_TE_743256 Chr10 13051661 13051442 - ORSgTEMT02000063 217 0.6621 (1940/2930) 1 Intact * Os_TE_743243 Chr10 13046994 13046995 - COPIA2-LTR_OS 6433 0.0045 (13/2915) 0 * * Os_TE_743189 Chr10 13026660 13026661 - MERMITE18B 1306 0.0013 (4/2984) 0 * * Os_TE_743173 Chr10 13024322 13024323 - SZ-44LTR 1408 0.0017 (5/2984) 0 * Os_TE_743172 Os_TE_743172 Chr10 13024318 13024317 + SZ-29LTR 1393 0.0017 (5/2988) 0 * Os_TE_743173 Os_TE_743167 Chr10 13023638 13023639 - JOUZHENA 607 0.0010 (3/2957) 0 * * Os_TE_743154 Chr10 13006380 13006381 - ORSiTERT00100062 5674 0.0003 (1/2928) 0 * * Os_TE_743148 Chr10 13003979 13003980 - TYPEM 227 0.0017 (5/2989) 0 * * Os_TE_743139 Chr10 12999566 12999567 + RIREX_LTR 8828 0.0027 (8/2980) 0 * Os_TE_743138 Os_TE_743138 Chr10 12999562 12999561 - RIREX_LTR 8828 0.0027 (8/2978) 0 * Os_TE_743139 Os_TE_743134 Chr10 12996627 12996628 - SZ-4_LTR 5991 0.0010 (3/2950) 0 * Os_TE_743133 Os_TE_743133 Chr10 12996623 12996622 + SZ-4_LTR 5991 0.0010 (3/2944) 0 * Os_TE_743134 Os_TE_743132 Chr10 12996450 12996451 - ORSgTEMT00700002 381 0.0003 (1/2967) 0 * * Os_TE_743097 Chr10 12984280 12984281 - COPI2_LTR 4733 0.0003 (1/2997) 0 * * Os_TE_743094 Chr10 12982840 12982841 + F770 284 0.1544 (461/2986) 0 * * Os_TE_743084 Chr10 12977191 12977192 + OSTE33 1012 0.1176 (342/2907) 0 * Os_TE_743083 Os_TE_743083 Chr10 12977182 12977181 - OSTE33 1012 0.1514 (453/2992) 0 * Os_TE_743084 Os_TE_743066 Chr10 12967788 12967789 + TWIF 586 0.0007 (2/2995) 0 * Os_TE_743065 Os_TE_743065 Chr10 12967781 12967780 - ORSiTETNOOT00134 607 0.0003 (1/2995) 0 * Os_TE_743066 Os_TE_743062 Chr10 12966841 12966840 - CLOUD 734 0.6441 (1862/2891) 0 * * Os_TE_743033 Chr10 12957414 12955258 + SZ-61LTR 2410 0.2995 (806/2691) 1 Intact * Os_TE_743020 Chr10 12951278 12951279 + RIREX_LTR 8828 0.0006 (1/1608) 0 * * Os_TE_743014 Chr10 12949660 12950337 - BAJIELTR 4500 0.2687 (795/2959) 1 Solo_LTR * Os_TE_743008 Chr10 12940465 12940466 + STOWAWAY15-2_OS 145 0.7304 (2110/2889) 0 * Os_TE_743007 Os_TE_743007 Chr10 12940463 12940462 + ORSgTEMT01700513 151 0.7398 (2192/2963) 0 * Os_TE_743008 Os_TE_742981 Chr10 12928293 12928292 + MPING 430 0.0003 (1/2994) 0 * * Os_TE_742960 Chr10 12919330 12919329 - ORSgTEMT01700659 156 0.0025 (7/2843) 0 * * Os_TE_742957 Chr10 12918904 12918903 - TRUNCATOR 2918 0.0017 (5/2988) 0 * Os_TE_742956 Os_TE_742956 Chr10 12918903 12918904 + TRUNCATOR 2918 0.0017 (5/2981) 0 * Os_TE_742957 Os_TE_742899 Chr10 12893920 12893919 - STOWAWAY8_OS 259 0.0004 (1/2796) 0 * * Os_TE_742879 Chr10 12888739 12888740 + ORSiTEMT03300001 145 0.0013 (4/2971) 0 * * Os_TE_742875 Chr10 12884727 12884728 + RIRE2_LTR 11306 0.0003 (1/2885) 0 * * Os_TE_742866 Chr10 12882224 12882225 + TELIA 141 0.0012 (1/857) 0 * Os_TE_742865 Os_TE_742865 Chr10 12882216 12882215 - TELIA 141 0.0025 (2/815) 0 * Os_TE_742866 Os_TE_742850 Chr10 12872998 12872997 - COPIA2-LTR_OS 6433 0.0007 (2/2967) 0 * * Os_TE_742848 Chr10 12870744 12870743 + SPMLIKE 10989 0.0017 (5/2969) 0 * * Os_TE_742841 Chr10 12870083 12870084 + MERMITE18B 1306 0.0018 (5/2750) 0 * * Os_TE_742793 Chr10 12833733 12833734 - SZ-9LTR 965 0.1022 (303/2965) 0 * * Os_TE_742791 Chr10 12833479 12833480 - ORSgTEMT01400014 209 0.6201 (1262/2035) 0 * * Os_TE_742790 Chr10 12833263 12819711 - SZ-5LTR 1223 0.6051 (1678/2773) 1 Intact * Os_TE_742710 Chr10 12803677 12803678 + AMYLTP 383 0.2610 (774/2966) 0 * Os_TE_742709 Os_TE_742709 Chr10 12803669 12803668 - AMYLTP 383 0.2442 (711/2912) 0 * Os_TE_742710 Os_TE_742708 Chr10 12802004 12802003 - TOS17LTR 138 0.0013 (4/2980) 0 * * Os_TE_742702 Chr10 12798769 12798770 + ORSiTERTOOT00296 5553 0.0003 (1/2980) 0 * Os_TE_742701 Os_TE_742701 Chr10 12798765 12798764 - SC-3_LTR 5748 0.0003 (1/2983) 0 * Os_TE_742702 Os_TE_742700 Chr10 12798603 12798604 + ORSiTERTOOT00250 3262 0.0003 (1/2992) 0 * * Os_TE_742698 Chr10 12796063 12796062 + STOWAWAY44_OS 240 0.0037 (11/2956) 0 * * Os_TE_742676 Chr10 12780160 12780161 - MICROPON-LIKE-2 102 0.0003 (1/2991) 0 * * Os_TE_742660 Chr10 12771498 12771497 + ORSiTERTOOT00226 792 0.0003 (1/2994) 0 * * Os_TE_742656 Chr10 12769666 12769665 + SZ-67LTR 1540 0.0010 (3/2996) 0 * * Os_TE_742650 Chr10 12765236 12765235 + ORSiCMCM00100019 2717 0.1912 (568/2971) 0 * * Os_TE_742587 Chr10 12731655 12731656 - ORSiTERT00200154 9386 0.5574 (1660/2978) 0 * * Os_TE_742493 Chr10 12692371 12692372 - COPIA2-LTR_OS 6433 0.0004 (1/2482) 0 * Os_TE_742492 Os_TE_742492 Chr10 12692367 12692366 + COPIA2-LTR_OS 6433 0.0004 (1/2483) 0 * Os_TE_742493 Os_TE_742487 Chr10 12689114 12689115 - STOWAWAY51_OS 246 0.0016 (4/2483) 0 * * Os_TE_742486 Chr10 12688552 12688553 - ORSgTETN00200001 10994 0.0029 (7/2444) 0 * Os_TE_742485 Os_TE_742485 Chr10 12688550 12688549 + SPMLIKE 10989 0.0029 (7/2449) 0 * Os_TE_742486 Os_TE_742477 Chr10 12686413 12686414 - COPI2_LTR 4733 0.0004 (1/2483) 0 * Os_TE_742476 Os_TE_742476 Chr10 12686409 12686408 + COPI2_LTR 4733 0.0004 (1/2480) 0 * Os_TE_742477 Os_TE_742467 Chr10 12678228 12678227 - RIREX_LTR 8828 0.0004 (1/2487) 0 * * Os_TE_742464 Chr10 12676417 12673272 - RIRE3_LTR 12054 0.3211 (797/2482) 1 Solo_LTR * Os_TE_742418 Chr10 12650139 12650138 - COPIA2-LTR_OS 6433 0.0004 (1/2453) 0 * * Os_TE_742131 Chr10 12498965 12498966 + ORSiTERTOOT00097 759 0.0003 (1/2863) 0 * * Os_TE_742115 Chr10 12494399 12494398 + ORSiTERTOOT00027 10853 0.0003 (1/2978) 0 * * Os_TE_742113 Chr10 12494327 12494326 - RIRE3_LTR 12054 0.1019 (303/2974) 0 * * Os_TE_742080 Chr10 12482601 12482602 - COPIA2-LTR_OS 6433 0.0003 (1/2975) 0 * Os_TE_742079 Os_TE_742079 Chr10 12482597 12482596 + COPIA2-LTR_OS 6433 0.0003 (1/2976) 0 * Os_TE_742080 Os_TE_741681 Chr10 12336077 12336076 - ORSgTEMT01701882 154 0.0017 (5/2988) 0 * Os_TE_741680 Os_TE_741680 Chr10 12336074 12336075 + STOWAWAY50_OS 174 0.0017 (5/2987) 0 * Os_TE_741681 Os_TE_741678 Chr10 12335146 12335147 - RIRE3A_LTR 10580 0.0003 (1/2955) 0 * Os_TE_741677 Os_TE_741677 Chr10 12335142 12335141 + RIRE3A_LTR 10580 0.0003 (1/2951) 0 * Os_TE_741678 Os_TE_741667 Chr10 12327345 12327344 - ORSgTEMT00900099 250 0.5703 (1703/2986) 0 * * Os_TE_741665 Chr10 12327317 12327316 + ORSgTEMT00900476 242 0.0020 (5/2519) 0 * * Os_TE_741641 Chr10 12315137 12315136 - MUDRN3_OS 903 0.0008 (2/2452) 0 * * Os_TE_741628 Chr10 12309725 12309726 + SC-8_LTR 4951 0.0003 (1/2996) 0 * Os_TE_741627 Os_TE_741627 Chr10 12309721 12309720 - SC-8_LTR 4951 0.0003 (1/2996) 0 * Os_TE_741628 Os_TE_741625 Chr10 12309472 12309471 + STOWAWAY20_OS 278 0.0023 (7/2993) 0 * * Os_TE_741567 Chr10 12278311 12278310 + RIRE3A_LTR 10580 0.0003 (1/2997) 0 * * Os_TE_741510 Chr10 12260240 12260241 + ORSgTEMT01602119 229 0.0025 (7/2848) 0 * * Os_TE_741463 Chr10 12241547 12247391 + TRUNCATOR 2918 0.8796 (1337/1520) 1 Intact * Os_TE_741427 Chr10 12228288 12228287 - ORSgTEMT01600747 238 0.0012 (2/1626) 0 * Os_TE_741426 Os_TE_741426 Chr10 12228285 12228286 - ORSgTEMT01602413 239 0.0015 (2/1349) 0 * Os_TE_741427 Os_TE_741409 Chr10 12218471 12218470 - COPI2_LTR 4733 0.0003 (1/2951) 0 * * Os_TE_741400 Chr10 12217173 12217174 + SINE03_OS 360 0.0021 (5/2331) -1 * * Os_TE_741368 Chr10 12209608 12209607 - MuDR4_OS 7610 0.5556 (1635/2943) 0 * * Os_TE_741362 Chr10 12205171 12205172 - STOWAWAY10_OS 259 0.6877 (1638/2382) 0 * * Os_TE_741353 Chr10 12203411 12203412 - ORSgTERT00201216 11284 0.4900 (1276/2604) 0 * * Os_TE_741342 Chr10 12199437 12199438 + SPMLIKE 10989 0.1568 (433/2762) 0 * Os_TE_741341 Os_TE_741341 Chr10 12199435 12199434 - ORSgTETN00200001 10994 0.1736 (487/2805) 0 * Os_TE_741342 Os_TE_741339 Chr10 12194896 12194895 - ORSgTEMT01700659 156 0.5311 (1503/2830) 0 * * Os_TE_741334 Chr10 12190047 12190661 - CACTA-J 1159 0.4475 (1286/2874) 1 Intact * Os_TE_741332 Chr10 12189701 12189702 + SPMLIKE 10989 0.0956 (284/2971) 0 * Os_TE_741331 Os_TE_741331 Chr10 12189699 12189698 - ORSgTETN00200001 10994 0.0933 (277/2969) 0 * Os_TE_741332 Os_TE_741328 Chr10 12187348 12187349 + COPI2_LTR 4733 0.0007 (2/2955) 0 * Os_TE_741327 Os_TE_741327 Chr10 12187344 12187343 - COPI2_LTR 4733 0.0010 (3/2951) 0 * Os_TE_741328 Os_TE_741326 Chr10 12186954 12186955 - MPING 430 0.0003 (1/2984) 0 * Os_TE_741325 Os_TE_741325 Chr10 12186952 12186951 + MPING 430 0.0006 (1/1710) 0 * Os_TE_741326 Os_TE_741320 Chr10 12184971 12184972 + GAIJIN 147 0.0017 (5/2949) 0 * Os_TE_741319 Os_TE_741319 Chr10 12184970 12184969 - ORSgTEMT00500578 129 0.0017 (5/2981) 0 * Os_TE_741320 Os_TE_741318 Chr10 12184704 12184341 + CASTAWAY 364 0.4718 (1104/2340) 1 Intact Os_TE_741316 Os_TE_741316 Chr10 12184341 12184704 - CASTAWAY 364 0.5610 (1656/2952) 1 Intact Os_TE_741318 Os_TE_741314 Chr10 12183639 12183390 - STOWAWAY8_OS 259 0.5538 (1615/2916) 1 Intact * Os_TE_741305 Chr10 12182444 12182625 + ORSgTEMT06000088 181 0.8628 (1428/1655) 1 Intact * Os_TE_741282 Chr10 12176474 12176473 - TRUNCATOR 2918 0.6092 (1634/2682) 0 * Os_TE_741281 Os_TE_741281 Chr10 12176473 12176474 + TRUNCATOR 2918 0.6556 (1932/2947) 0 * Os_TE_741282 Os_TE_741278 Chr10 12176191 12176192 + RIRE3A_LTR 10580 0.0007 (2/2948) 0 * Os_TE_741277 Os_TE_741277 Chr10 12176187 12176186 - RIRE3A_LTR 10580 0.0007 (2/2954) 0 * Os_TE_741278 Os_TE_741222 Chr10 12154054 12165135 - ORSgTETN00200001 10994 0.2753 (699/2539) 1 Intact * Os_TE_741221 Chr10 12154044 12154045 + ORSgTEMT00600360 369 0.7352 (1902/2587) 0 * * Os_TE_741209 Chr10 12143313 12143314 + RETROSAT2LTRA 3112 0.0036 (6/1669) 0 * Os_TE_741208 Os_TE_741208 Chr10 12143309 12143308 - RETROSAT3_LTR 11537 0.4602 (1366/2968) 0 * Os_TE_741209 Os_TE_741181 Chr10 12137587 12137588 - MuDR4_OS 7610 0.0010 (3/2950) 0 * Os_TE_741180 Os_TE_741180 Chr10 12137581 12137580 - MuDR4_OS 7610 0.0007 (2/2954) 0 * Os_TE_741181 Os_TE_741162 Chr10 12133886 12130976 + ORSiCMCM00100019 2717 0.2623 (783/2985) 1 Intact Os_TE_741158 Os_TE_741158 Chr10 12130976 12133886 - TRUNCATOR2_LTR 2904 0.2657 (795/2992) 1 Intact Os_TE_741162 Os_TE_741156 Chr10 12129974 12129975 + RETROSAT3_LTR 11537 0.0024 (7/2935) 0 * * Os_TE_741120 Chr10 12116425 12116426 + TELIA 141 0.0003 (1/2976) 0 * * Os_TE_741077 Chr10 12096336 12096337 - MuDR3_OS 8604 0.0007 (2/2979) 0 * * Os_TE_741071 Chr10 12094020 12094019 - ENSPM4_OS 11610 0.1019 (302/2964) 0 * * Os_TE_741069 Chr10 12093262 12093263 + RIREX_LTR 8828 0.0003 (1/2976) 0 * Os_TE_741068 Os_TE_741068 Chr10 12093258 12093257 - RIREX_LTR 8828 0.0003 (1/2970) 0 * Os_TE_741069 Os_TE_741066 Chr10 12090432 12090431 - TRUNCATOR 2918 0.0003 (1/2993) 0 * * Os_TE_741045 Chr10 12078216 12078217 + HARB-1_OS 5166 0.0003 (1/2989) 0 * Os_TE_741044 Os_TE_741044 Chr10 12078214 12078213 - HARB-1_OS 5166 0.0003 (1/2998) 0 * Os_TE_741045 Os_TE_741026 Chr10 12071294 12071295 - SC-8_LTR 4951 0.0007 (2/2972) 0 * * Os_TE_740981 Chr10 12054301 12054302 + MPING 430 0.0003 (1/2978) 0 * Os_TE_740980 Os_TE_740980 Chr10 12054299 12054298 - MPING 430 0.0003 (1/2967) 0 * Os_TE_740981 Os_TE_740972 Chr10 12053087 12053088 - ORSgTEMT02400246 177 0.0003 (1/2926) 0 * * Os_TE_740920 Chr10 12035240 12035241 - EnSpm-10_OS 11265 0.0003 (1/2919) 0 * * Os_TE_740914 Chr10 12032658 12032657 + ORSgTEMT02400014 229 0.4478 (1201/2682) 0 * Os_TE_740913 Os_TE_740913 Chr10 12032654 12032655 - ORSgTEMT02400148 214 0.3986 (1183/2968) 0 * Os_TE_740914 Os_TE_740888 Chr10 12025290 12025291 + MPING 430 0.0026 (7/2691) 0 * Os_TE_740887 Os_TE_740887 Chr10 12025288 12025287 - MPING 430 0.0030 (8/2669) 0 * Os_TE_740888 Os_TE_740885 Chr10 12023623 12023624 + ORSiTERTOOT00097 759 0.0007 (2/2962) 0 * * Os_TE_740872 Chr10 12019579 12019580 - TRUNCATOR2_LTR 2904 0.0003 (1/2985) 0 * * Os_TE_740867 Chr10 12017622 12017621 + ORSgTEMT01601122 212 0.0024 (7/2921) 0 * Os_TE_740866 Os_TE_740866 Chr10 12017619 12017620 + ORSgTEMT01601122 212 0.0024 (7/2937) 0 * Os_TE_740867 Os_TE_740846 Chr10 12006813 12006812 - SZ-40LTR 2465 0.0003 (1/2984) 0 * * Os_TE_740845 Chr10 12005053 12004840 + ORSgTEMT01601122 212 0.4797 (1415/2950) 1 Intact Os_TE_740844 Os_TE_740844 Chr10 12004812 12005053 + ORSgTEMT01601122 212 0.4720 (1373/2909) 1 Intact Os_TE_740845 Os_TE_740841 Chr10 12003931 12003930 - TRUNCATOR 2918 0.1207 (340/2816) 0 * Os_TE_740840 Os_TE_740840 Chr10 12003930 12003931 + TRUNCATOR 2918 0.1345 (380/2826) 0 * Os_TE_740841 Os_TE_740837 Chr10 12003671 12003670 + CACTA-I 1124 0.0003 (1/2948) 0 * * Os_TE_740835 Chr10 12000231 11999311 + MUDRN3_OS 903 0.1584 (469/2960) 1 Intact * Os_TE_740820 Chr10 11994120 11994121 - SC-8_LTR 4951 0.0003 (1/2997) 0 * * Os_TE_740808 Chr10 11988142 11988141 + RPO_OS 1983 0.3040 (874/2875) 0 * * Os_TE_740800 Chr10 11978754 11978753 - TREP215 239 0.0063 (2/317) 0 * * Os_TE_740792 Chr10 11973591 11973592 - TRUNCATOR2_LTR 2904 0.0030 (9/2975) 0 * Os_TE_740791 Os_TE_740791 Chr10 11973587 11973586 + ORSiTERTOOT00028 8600 0.0024 (7/2972) 0 * Os_TE_740792 Os_TE_740789 Chr10 11973332 11973331 + RETROSAT2LTR 12796 0.2849 (849/2980) 0 * * Os_TE_740780 Chr10 11970032 11970033 + INDITTO 263 0.0003 (1/2945) 0 * Os_TE_740779 Os_TE_740779 Chr10 11970030 11970029 + ORSgTETNOOT01570 244 0.0003 (1/2937) 0 * Os_TE_740780 Os_TE_740728 Chr10 11955937 11955938 - GYPSY-A_LTR 8951 0.0010 (3/2992) 0 * Os_TE_740727 Os_TE_740727 Chr10 11955933 11955932 + SZ-40LTR 2465 0.0010 (3/2995) 0 * Os_TE_740728 Os_TE_740720 Chr10 11947013 11946840 - ORSgTEMT01701366 170 0.1451 (402/2770) 1 Intact * Os_TE_740712 Chr10 11943860 11946164 + MERMITE18C 1473 0.1418 (411/2899) 1 Intact * Os_TE_740711 Chr10 11943275 11943276 + ORSgTEMT00900210 205 0.8482 (2520/2971) 0 * * Os_TE_740701 Chr10 11936999 11937000 - SC-8_LTR 4951 0.0003 (1/2942) 0 * Os_TE_740700 Os_TE_740700 Chr10 11936995 11936994 + SC-8_LTR 4951 0.0003 (1/2944) 0 * Os_TE_740701 Os_TE_740699 Chr10 11934890 11934891 + ORSgTETNOOT00792 273 0.0014 (4/2867) 0 * * Os_TE_740682 Chr10 11931149 11931150 + INDITTO 263 0.0077 (23/2996) 0 * Os_TE_740681 Os_TE_740681 Chr10 11931147 11931146 - INDITTO 263 0.0070 (21/2993) 0 * Os_TE_740682 Os_TE_740680 Chr10 11930842 11930843 + INDITTO 263 0.0003 (1/2991) 0 * Os_TE_740679 Os_TE_740679 Chr10 11930841 11930840 - INDITTO 263 0.0003 (1/2989) 0 * Os_TE_740680 Os_TE_740678 Chr10 11930291 11930292 + RETRO2A_LTR 12895 0.0024 (7/2977) 0 * * Os_TE_740638 Chr10 11917232 11917231 + ORSgTEMT01601591 242 0.1394 (404/2898) 0 * Os_TE_740637 Os_TE_740637 Chr10 11917229 11917230 + ORSgTEMT01601591 242 0.1591 (468/2941) 0 * Os_TE_740638 Os_TE_740601 Chr10 11905334 11905335 - RIREX_LTR 8828 0.0027 (8/2963) 0 * Os_TE_740600 Os_TE_740600 Chr10 11905330 11905329 + RIREX_LTR 8828 0.0024 (7/2972) 0 * Os_TE_740601 Os_TE_740556 Chr10 11892011 11892012 - MERMITE18D 1491 0.0020 (5/2440) 0 * * Os_TE_740550 Chr10 11890901 11890902 + INDITTO 263 0.0017 (5/2956) 0 * * Os_TE_740541 Chr10 11889811 11889812 + ORSgTERT00201382 11280 0.0007 (2/2702) 0 * Os_TE_740539 Os_TE_740539 Chr10 11889801 11889800 - RIRE2_LTR 11306 0.1038 (309/2978) 0 * Os_TE_740541 Os_TE_740538 Chr10 11889467 11889468 - ORSgTEMT01601208 238 0.0017 (5/2952) 0 * * Os_TE_740525 Chr10 11886925 11885504 + OSTE15 1168 0.6156 (1638/2661) 1 Intact * Os_TE_740518 Chr10 11881783 11881784 - SC-3_LTR 5748 0.0003 (1/2987) 0 * Os_TE_740517 Os_TE_740517 Chr10 11881779 11881778 + ORSiTERTOOT00296 5553 0.0003 (1/2989) 0 * Os_TE_740518 Os_TE_740513 Chr10 11879209 11879210 + ORSgTEMT01701224 156 0.0017 (5/2893) 0 * * Os_TE_740512 Chr10 11878935 11878936 - SZ-22_LTR 4403 0.0010 (3/2960) 0 * Os_TE_740511 Os_TE_740511 Chr10 11878931 11878930 + SZ-22_LTR 4403 0.0010 (3/2965) 0 * Os_TE_740512 Os_TE_740506 Chr10 11878170 11878169 - TESS 244 0.0003 (1/2991) 0 * * Os_TE_740505 Chr10 11878011 11878012 - ENSPM4_OS 11610 0.0003 (1/2990) 0 * * Os_TE_740492 Chr10 11875977 11875976 - CACTA-H 1152 0.0045 (13/2887) 0 * * Os_TE_740491 Chr10 11875875 11875876 - ORSgTETN00200001 10994 0.3072 (882/2871) 0 * Os_TE_740490 Os_TE_740490 Chr10 11875873 11875872 + SPMLIKE 10989 0.3188 (926/2905) 0 * Os_TE_740491 Os_TE_740467 Chr10 11865011 11865012 + COPIA2-LTR_OS 6433 0.0003 (1/2982) 0 * Os_TE_740466 Os_TE_740466 Chr10 11865007 11865006 - COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * Os_TE_740467 Os_TE_740460 Chr10 11862124 11862125 + ORSiTEMT00300001 383 0.0017 (5/2998) 0 * * Os_TE_740457 Chr10 11860638 11860639 + TRUNCATOR 2918 0.2248 (572/2545) 0 * * Os_TE_740455 Chr10 11859786 11859785 - STOWAWAY12_OS 312 0.2214 (662/2990) 0 * Os_TE_740454 Os_TE_740454 Chr10 11859785 11859786 - ORSgTEMT02900061 318 0.2191 (654/2985) 0 * Os_TE_740455 Os_TE_740431 Chr10 11852267 11859090 + RIREX_LTR 8828 0.7942 (2362/2974) 1 Intact * Os_TE_740410 Chr10 11845978 11845977 - RIRE2_LTR 11306 0.0896 (257/2869) 0 * * Os_TE_740404 Chr10 11843183 11843184 - ORSgTEMT00400006 152 0.0003 (1/2987) 0 * * Os_TE_740395 Chr10 11836428 11836429 - CACTA-H 1152 0.0003 (1/2986) 0 * * Os_TE_740372 Chr10 11823369 11823370 - TYPEU1 380 0.3508 (1050/2993) 0 * Os_TE_740371 Os_TE_740371 Chr10 11823362 11823361 + TYPEU4 402 0.3504 (1048/2991) 0 * Os_TE_740372 Os_TE_740370 Chr10 11823222 11823223 - COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_740369 Os_TE_740369 Chr10 11823218 11823217 + COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_740370 Os_TE_740351 Chr10 11817408 11817409 - RIRE2_LTR 11306 0.0017 (5/2997) 0 * Os_TE_740350 Os_TE_740350 Chr10 11817404 11817403 + RIRE2_LTR 11306 0.0017 (5/2998) 0 * Os_TE_740351 Os_TE_740337 Chr10 11809660 11809659 - SC-3_LTR 5748 0.0024 (7/2967) 0 * * Os_TE_740335 Chr10 11809328 11809327 - SC-8_LTR 4951 0.2130 (634/2977) 0 * * Os_TE_740334 Chr10 11809099 11809100 - AMYLTP 383 0.0003 (1/2979) 0 * Os_TE_740333 Os_TE_740333 Chr10 11809091 11809090 + AMYLTP 383 0.0003 (1/2981) 0 * Os_TE_740334 Os_TE_740322 Chr10 11805399 11805400 + SC-8_LTR 4951 0.0040 (12/2969) 0 * Os_TE_740321 Os_TE_740321 Chr10 11805395 11805394 - SC-8_LTR 4951 0.0010 (3/2956) 0 * Os_TE_740322 Os_TE_740290 Chr10 11793508 11793509 - RIREX_LTR 8828 0.0003 (1/2972) 0 * Os_TE_740289 Os_TE_740289 Chr10 11793504 11793503 + RIREX_LTR 8828 0.0003 (1/2976) 0 * Os_TE_740290 Os_TE_740285 Chr10 11791752 11791753 + SPMLIKE 10989 0.0026 (7/2713) 0 * * Os_TE_740267 Chr10 11789864 11789865 + RETROSAT2LTR 12796 0.1983 (584/2945) 0 * * Os_TE_740248 Chr10 11779894 11779895 - ORSiTERTOOT00350 5275 0.0003 (1/2983) 0 * Os_TE_740247 Os_TE_740247 Chr10 11779890 11779889 + ORSiTERTOOT00350 5275 0.0003 (1/2981) 0 * Os_TE_740248 Os_TE_740245 Chr10 11779746 11779745 + COPI2_LTR 4733 0.0154 (46/2985) 0 * * Os_TE_740244 Chr10 11779581 11779582 + ORSiTERTOOT00361 5627 0.0074 (22/2985) 0 * Os_TE_740243 Os_TE_740243 Chr10 11779577 11779576 - ORSiTERTOOT00361 5627 0.0074 (22/2980) 0 * Os_TE_740244 Os_TE_740242 Chr10 11779075 11779074 - ORSgTEMT01602413 239 0.0017 (5/2986) 0 * Os_TE_740241 Os_TE_740241 Chr10 11779071 11779072 + ORSgTEMT01601525 239 0.0013 (4/2980) 0 * Os_TE_740242 Os_TE_740201 Chr10 11754477 11754476 - ORSgTEMT01602413 239 0.1978 (565/2856) 0 * Os_TE_740200 Os_TE_740200 Chr10 11754474 11754475 - ORSgTEMT01602413 239 0.2058 (601/2921) 0 * Os_TE_740201 Os_TE_740190 Chr10 11753720 11753719 - ORSgTETN00200001 10994 0.0034 (9/2609) 0 * * Os_TE_740189 Chr10 11753714 11753715 - NDNA1TNA_OS 334 0.2296 (598/2605) 0 * * Os_TE_740180 Chr10 11751606 11751605 + RETRO2_LTR 12874 0.0003 (1/2993) 0 * * Os_TE_740178 Chr10 11746614 11746615 - GYPSY-A_LTR 8951 0.0003 (1/2969) 0 * Os_TE_740177 Os_TE_740177 Chr10 11746610 11746609 + GYPSY-A_LTR 8951 0.0003 (1/2980) 0 * Os_TE_740178 Os_TE_740175 Chr10 11745879 11745880 - RETRO1_LTR 8314 0.0003 (1/2972) 0 * * Os_TE_740128 Chr10 11729085 11729086 - OLO24 345 0.0017 (5/2985) 0 * Os_TE_740127 Os_TE_740127 Chr10 11729083 11729082 + OLO24 345 0.0017 (5/2990) 0 * Os_TE_740128 Os_TE_740125 Chr10 11729003 11729004 - ORSgTEMT01601432 239 0.0010 (3/2978) 0 * * Os_TE_740104 Chr10 11721587 11721588 + ORSgTEMT00500476 150 0.0088 (26/2969) 0 * * Os_TE_740087 Chr10 11717988 11717989 - RETROSAT2LTR 12796 0.2557 (759/2968) 0 * Os_TE_740086 Os_TE_740086 Chr10 11717986 11717985 + RETROSAT2LTR 12796 0.2149 (614/2857) 0 * Os_TE_740087 Os_TE_740078 Chr10 11712964 11712963 + INDITTO 263 0.8590 (2546/2964) 0 * * Os_TE_740070 Chr10 11711723 11711724 - AMYLTP 383 0.0702 (167/2379) 0 * * Os_TE_740059 Chr10 11709520 11709519 + ORSgTEMT01700637 157 0.8381 (2107/2514) 0 * Os_TE_740058 Os_TE_740058 Chr10 11709517 11709518 + ORSgTEMT01700513 151 0.8387 (2100/2504) 0 * Os_TE_740059 Os_TE_740046 Chr10 11703514 11703513 + ORSgTEMT01602181 239 0.8506 (2426/2852) 0 * * Os_TE_740045 Chr10 11703511 11703512 - ORSgTEMT01601432 239 0.8555 (2474/2892) 0 * Os_TE_740044 Os_TE_740044 Chr10 11703507 11703506 - ORSgTEMT01600993 233 0.8489 (2394/2820) 0 * Os_TE_740045 Os_TE_740042 Chr10 11703482 11703483 - ORSgTEMT01601432 239 0.0003 (1/2889) 0 * * Os_TE_740029 Chr10 11694389 11694390 + ENSPM4_OS 11610 0.0007 (2/2984) 0 * * Os_TE_740020 Chr10 11689469 11676802 + RETRO2_LTR 12874 0.1284 (384/2990) 1 Intact Os_TE_740003 Os_TE_740003 Chr10 11676802 11689469 - RETRO2_LTR 12874 0.1286 (385/2993) 1 Intact Os_TE_740020 Os_TE_739995 Chr10 11673629 11673628 + ORSgTEMT01400040 213 0.4213 (1260/2991) 0 * Os_TE_739994 Os_TE_739994 Chr10 11673620 11673621 + ORSiTEMT01400003 220 0.4238 (1269/2994) 0 * Os_TE_739995 Os_TE_739990 Chr10 11671567 11671568 - TYPEH 309 0.0027 (8/2985) 0 * Os_TE_739989 Os_TE_739989 Chr10 11671565 11671564 - TYPEH 309 0.0033 (10/2990) 0 * Os_TE_739990 Os_TE_739963 Chr10 11662318 11662317 + RETRO2A_LTR 12895 0.0022 (6/2693) 0 * * Os_TE_739961 Chr10 11662091 11662092 + RETRO2_LTR 12874 0.0321 (95/2960) 0 * Os_TE_739960 Os_TE_739960 Chr10 11662087 11662086 - RETRO2_LTR 12874 0.0340 (96/2824) 0 * Os_TE_739961 Os_TE_739958 Chr10 11661407 11661406 + ORSiTERTOOT00027 10853 0.0013 (4/2989) 0 * * Os_TE_739957 Chr10 11660837 11660838 - RETROSAT2LTR 12796 0.4046 (1207/2983) 0 * * Os_TE_739954 Chr10 11660192 11660191 + STOWAWAY50_OS 174 0.3305 (866/2620) 0 * * Os_TE_739950 Chr10 11659410 11659409 - ORSgTEMT02400246 177 0.0005 (1/2042) 0 * Os_TE_739949 Os_TE_739949 Chr10 11659409 11659410 - TYPEM 227 0.0006 (1/1780) 0 * Os_TE_739950 Os_TE_739948 Chr10 11659359 11659360 - ORSgTETNOOT01337 247 0.4278 (1279/2990) 0 * Os_TE_739947 Os_TE_739947 Chr10 11659357 11659356 - INDITTO 263 0.4140 (1222/2952) 0 * Os_TE_739948 Os_TE_739924 Chr10 11648352 11648353 - ORSgTEMT00600085 364 0.4147 (741/1787) 0 * Os_TE_739923 Os_TE_739923 Chr10 11648350 11648349 + CASTAWAY 364 0.2417 (710/2938) 0 * Os_TE_739924 Os_TE_739921 Chr10 11646878 11646879 - COPI2_LTR 4733 0.0003 (1/2984) 0 * * Os_TE_739915 Chr10 11644416 11644415 - ORSgTEMT01700507 154 0.0235 (70/2980) 0 * Os_TE_739914 Os_TE_739914 Chr10 11644408 11644409 - ORSgTEMT01701254 154 0.0238 (71/2977) 0 * Os_TE_739915 Os_TE_739910 Chr10 11643922 11643921 - ORSgTEMT01601208 238 0.0247 (72/2917) 0 * Os_TE_739909 Os_TE_739909 Chr10 11643921 11643922 + ORSgTEMT01602665 238 0.0171 (50/2920) 0 * Os_TE_739910 Os_TE_739875 Chr10 11631556 11631557 + COPIA2-LTR_OS 6433 0.0284 (85/2992) 0 * Os_TE_739874 Os_TE_739874 Chr10 11631552 11631551 - COPIA2-LTR_OS 6433 0.0297 (89/2992) 0 * Os_TE_739875 Os_TE_739828 Chr10 11614645 11614646 + AMYLTP 383 0.0003 (1/2891) 0 * * Os_TE_739818 Chr10 11612870 11612869 + COPIA2-LTR_OS 6433 0.0003 (1/2975) 0 * * Os_TE_739810 Chr10 11610133 11610132 - COPIA2-LTR_OS 6433 0.0005 (1/2215) 0 * * Os_TE_739809 Chr10 11610087 11610088 + CLOUD-4 520 0.0004 (1/2827) 0 * * Os_TE_739807 Chr10 11609756 11609755 - RIRE5-LTR_OS 6427 0.0004 (1/2760) 0 * * Os_TE_739781 Chr10 11598700 11598701 + SZ-55_LTR 10318 0.0003 (1/2999) 0 * * Os_TE_739760 Chr10 11581264 11581263 - ORSgTEMT01701882 154 0.0179 (53/2955) 0 * * Os_TE_739744 Chr10 11572827 11572828 + ORSiTERTOOT00381 4988 0.0003 (1/2985) 0 * * Os_TE_739723 Chr10 11562581 11562582 + OSTE9 421 0.7070 (1822/2577) 0 * Os_TE_739722 Os_TE_739722 Chr10 11562577 11562576 - OSTE9 421 0.7099 (1840/2592) 0 * Os_TE_739723 Os_TE_739717 Chr10 11561593 11561592 - STOWAWAY10_OS 259 0.0200 (51/2554) 0 * * Os_TE_739712 Chr10 11559958 11559959 + ORSgTEMT01700505 154 0.0215 (54/2509) 0 * * Os_TE_739702 Chr10 11557771 11558055 + YOUREN 286 0.2583 (631/2443) 1 Intact * Os_TE_739675 Chr10 11544990 11544989 + ORSgTEMT01601122 212 0.0165 (49/2974) 0 * Os_TE_739674 Os_TE_739674 Chr10 11544987 11544988 + ORSgTEMT01601122 212 0.0165 (49/2976) 0 * Os_TE_739675 Os_TE_739665 Chr10 11538028 11538027 - ENSPM_OS 9843 0.4667 (1337/2865) 0 * * Os_TE_739655 Chr10 11534792 11534793 + ORSgTEMT00502544 146 0.7777 (2082/2677) 0 * * Os_TE_739491 Chr10 11469835 11469834 + ORSgTEMT03600118 431 0.0033 (2/603) 0 * * Os_TE_739483 Chr10 11468248 11468247 - RETRO1_LTR 8314 0.0016 (1/631) 0 * * Os_TE_739360 Chr10 11416223 11416224 + COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_739359 Os_TE_739359 Chr10 11416219 11416218 - COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_739360 Os_TE_739340 Chr10 11407113 11407114 + SC-4_LTR 5218 0.2178 (636/2920) 0 * * Os_TE_739329 Chr10 11402749 11402748 - RETROSAT2LTRA 3112 0.0189 (55/2912) 0 * * Os_TE_739323 Chr10 11401937 11401938 - OSTE33 1012 0.1171 (349/2980) 0 * * Os_TE_739311 Chr10 11399178 11399179 + ORSgTEMT01602288 241 0.0012 (1/810) -1 * * Os_TE_739305 Chr10 11397354 11397355 - ORSgTEMT01602413 239 0.1342 (399/2973) 0 * Os_TE_739304 Os_TE_739304 Chr10 11397304 11397303 + ORSgTETNOOT01930 140 0.1327 (394/2968) 0 * Os_TE_739305 Os_TE_739292 Chr10 11390964 11390965 - ORSgTEMT00501711 149 0.0004 (1/2616) 0 * * Os_TE_739290 Chr10 11389709 11389708 + OLO24C 356 0.1453 (430/2959) 0 * Os_TE_739289 Os_TE_739289 Chr10 11389706 11389707 + ORSgTEMT00101263 348 0.1336 (390/2920) 0 * Os_TE_739290 Os_TE_739285 Chr10 11389436 11389648 + COWARD 200 0.8657 (2573/2972) 1 Intact * Os_TE_739284 Chr10 11389104 11389105 + ORSgTEMT01600726 235 0.1423 (425/2986) 0 * Os_TE_739283 Os_TE_739283 Chr10 11389102 11389101 + STOWAWAY51_OS 246 0.1394 (416/2985) 0 * Os_TE_739284 Os_TE_739280 Chr10 11384387 11383858 - CLOUD-4 520 0.0714 (210/2943) 1 Intact Os_TE_739278 Os_TE_739278 Chr10 11383857 11384387 + CLOUD-4 520 0.0684 (201/2939) 1 Intact Os_TE_739280 Os_TE_739271 Chr10 11380980 11374797 + ORSiCMCM00100016 1387 0.0731 (216/2955) 1 Intact Os_TE_739267 Os_TE_739267 Chr10 11374785 11380980 - SZ-10LTR 1412 0.0722 (209/2896) 1 Intact Os_TE_739271 Os_TE_739264 Chr10 11372994 11373312 - ORSgTEMT00100799 337 0.0728 (217/2979) 1 Intact * Os_TE_739244 Chr10 11355219 11354736 + ORSgTEMT01400031 216 0.0727 (215/2958) 1 Intact Os_TE_739239 Os_TE_739239 Chr10 11354736 11355217 + ORSgTEMT01400009 212 0.0741 (221/2984) 1 Intact Os_TE_739244 Os_TE_739212 Chr10 11328988 11335399 - OSTONOR1_LTR 6440 0.0732 (219/2992) 1 Intact * Os_TE_739210 Chr10 11328203 11328204 + WUWU 113 0.0017 (5/2975) 0 * * Os_TE_739207 Chr10 11327991 11327990 - OSLINE1-4 4779 0.8893 (2370/2665) 0 * * Os_TE_739198 Chr10 11326994 11326745 - ORSgTEMT01400038 210 0.0689 (196/2846) 1 Intact Os_TE_739195 Os_TE_739195 Chr10 11326746 11326940 - ORSgTEMT01400014 209 0.0746 (223/2988) 1 Intact Os_TE_739198 Os_TE_739192 Chr10 11326680 11326679 - SPMLIKE 10989 0.0007 (2/2997) 0 * * Os_TE_739183 Chr10 11323299 11323300 + ORSgTEMT00600272 361 0.0188 (56/2984) 0 * * Os_TE_739181 Chr10 11322905 11322906 + INDITTO 263 0.0251 (75/2990) 0 * * Os_TE_739166 Chr10 11319171 11319170 + TRUNCATOR 2918 0.2189 (642/2933) 0 * Os_TE_739165 Os_TE_739165 Chr10 11319170 11319171 - TRUNCATOR 2918 0.1877 (535/2851) 0 * Os_TE_739166 Os_TE_739164 Chr10 11318987 11318986 - CLOUD-6 508 0.0014 (4/2840) 0 * * Os_TE_739133 Chr10 11299307 11299306 - AMYLTP 383 0.2127 (605/2844) 0 * * Os_TE_739131 Chr10 11298691 11298692 + TELIA 141 0.1796 (386/2149) 0 * Os_TE_739130 Os_TE_739130 Chr10 11298683 11298682 - TELIA 141 0.1817 (390/2146) 0 * Os_TE_739131 Os_TE_739127 Chr10 11297686 11297685 + SEVERIN-2 1952 0.2191 (638/2912) 0 * * Os_TE_739113 Chr10 11293021 11293022 + ORSiTERTOOT00296 5553 0.0017 (5/2987) 0 * Os_TE_739112 Os_TE_739112 Chr10 11293017 11293016 - SC-3_LTR 5748 0.0017 (5/2986) 0 * Os_TE_739113 Os_TE_739111 Chr10 11292128 11292129 - OsSN3 183 0.2314 (688/2973) 0 * Os_TE_739110 Os_TE_739110 Chr10 11292110 11292109 + OsSN3 183 0.2393 (714/2984) 0 * Os_TE_739111 Os_TE_739101 Chr10 11286361 11286362 + RIREX_LTR 8828 0.0010 (3/2992) 0 * Os_TE_739100 Os_TE_739100 Chr10 11286357 11286356 - RIREX_LTR 8828 0.0011 (3/2716) 0 * Os_TE_739101 Os_TE_739080 Chr10 11269311 11269310 + TREP219 104 0.0004 (1/2851) 0 * * Os_TE_739069 Chr10 11266167 11266168 + TWIF 586 0.2290 (645/2817) 0 * Os_TE_739068 Os_TE_739068 Chr10 11266160 11266159 - ORSiTETNOOT00200 3563 0.2387 (680/2849) 0 * Os_TE_739069 Os_TE_739051 Chr10 11264113 11264114 + RETRO1_LTR 8314 0.0007 (2/2679) 0 * * Os_TE_739047 Chr10 11263509 11263510 + ORSiTEMT00100001 540 0.0004 (1/2832) 0 * * Os_TE_739046 Chr10 11263452 11263451 - STOWAWAY44_OS 240 0.0007 (2/2808) 0 * * Os_TE_739020 Chr10 11247882 11247881 + ORSgTETNOOT00032 218 0.0010 (3/2995) 0 * * Os_TE_739015 Chr10 11242396 11241896 + OSTONOR1_LTR 6440 0.0988 (291/2944) 1 Solo_LTR Os_TE_739014 Os_TE_739014 Chr10 11241897 11242396 - ORSiTERT00100062 5674 0.0989 (290/2933) 1 Intact Os_TE_739015 Os_TE_739012 Chr10 11241318 11241319 - COPIA2-LTR_OS 6433 0.0007 (2/2973) 0 * * Os_TE_738993 Chr10 11234717 11234716 - COPIA2-LTR_OS 6433 0.0003 (1/2913) 0 * * Os_TE_738986 Chr10 11227936 11227692 + STOWAWAY51_OS 246 0.8384 (2486/2965) 1 Intact * Os_TE_738950 Chr10 11215428 11215429 - RIRE3_LTR 12054 0.0003 (1/2981) 0 * Os_TE_738949 Os_TE_738949 Chr10 11215424 11215423 + RIRE3_LTR 12054 0.0003 (1/2976) 0 * Os_TE_738950 Os_TE_738937 Chr10 11209959 11209958 - RETROSAT2LTR 12796 0.0159 (47/2960) 0 * * Os_TE_738924 Chr10 11206310 11206311 - HARB-1_OS 5166 0.0003 (1/2959) 0 * Os_TE_738923 Os_TE_738923 Chr10 11206308 11206307 + HARB-1_OS 5166 0.0007 (2/2961) 0 * Os_TE_738924 Os_TE_738921 Chr10 11206149 11206148 + MPING 430 0.0435 (129/2968) 0 * * Os_TE_738916 Chr10 11203978 11203979 + COPIA2-LTR_OS 6433 0.0003 (1/2986) 0 * Os_TE_738915 Os_TE_738915 Chr10 11203974 11203973 - COPIA2-LTR_OS 6433 0.0003 (1/2986) 0 * Os_TE_738916 Os_TE_738910 Chr10 11201723 11201722 + ORSiTERTOOT00296 5553 0.0003 (1/2995) 0 * * Os_TE_738909 Chr10 11201364 11201365 - SC-3_LTR 5748 0.0194 (58/2993) 0 * Os_TE_738908 Os_TE_738908 Chr10 11201360 11201359 + ORSiTERTOOT00296 5553 0.0194 (58/2992) 0 * Os_TE_738909 Os_TE_738904 Chr10 11199423 11199424 - Cassandra_OS-LTR 764 0.0007 (2/2752) 0 * * Os_TE_738902 Chr10 11198056 11198057 + ORSiTERTOOT00296 5553 0.0007 (2/2994) 0 * Os_TE_738901 Os_TE_738901 Chr10 11198052 11198051 - SC-3_LTR 5748 0.0007 (2/2997) 0 * Os_TE_738902 Os_TE_738853 Chr10 11173324 11173325 + TRUNCATOR 2918 0.1344 (403/2998) 0 * * Os_TE_738794 Chr10 11147895 11147896 - RIREX_LTR 8828 0.2743 (722/2632) 0 * Os_TE_738793 Os_TE_738793 Chr10 11147891 11147890 + RIREX_LTR 8828 0.2744 (723/2635) 0 * Os_TE_738794 Os_TE_738707 Chr10 11112154 11112153 + MPING 430 0.0003 (1/2967) 0 * * Os_TE_738700 Chr10 11108551 11108913 - DNAUN1_OS 408 0.1507 (382/2534) 1 Intact * Os_TE_738695 Chr10 11106559 11106560 + CACTA-L 1162 0.8621 (2513/2915) 0 * Os_TE_738694 Os_TE_738694 Chr10 11106557 11106556 - CACTA-J 1159 0.8592 (2411/2806) 0 * Os_TE_738695 Os_TE_738644 Chr10 11084512 11084511 - TRUNCATOR 2918 0.0656 (57/869) 0 * Os_TE_738643 Os_TE_738643 Chr10 11084511 11084512 + TRUNCATOR 2918 0.0681 (181/2658) 0 * Os_TE_738644 Os_TE_738550 Chr10 11048628 11048627 - ORSgTEMT00901071 248 0.0013 (4/2985) 0 * * Os_TE_738538 Chr10 11045573 11045574 + COPI2_LTR 4733 0.0007 (2/2982) 0 * Os_TE_738537 Os_TE_738537 Chr10 11045569 11045568 - COPI2_LTR 4733 0.0007 (2/2982) 0 * Os_TE_738538 Os_TE_738536 Chr10 11045528 11045529 + F770 284 0.8610 (2564/2978) 0 * * Os_TE_738525 Chr10 11042319 11042320 + SPMLIKE 10989 0.0003 (1/2974) 0 * Os_TE_738524 Os_TE_738524 Chr10 11042317 11042316 - ORSgTETN00200001 10994 0.0003 (1/2966) 0 * Os_TE_738525 Os_TE_738506 Chr10 11030485 11030484 - STOWAWAY10_OS 259 0.1403 (334/2380) 0 * Os_TE_738505 Os_TE_738505 Chr10 11030484 11030485 - ORSgTEMT00101174 225 0.3050 (880/2885) 0 * Os_TE_738506 Os_TE_738500 Chr10 11028065 11028066 + RIREX_LTR 8828 0.0194 (58/2997) 0 * Os_TE_738499 Os_TE_738499 Chr10 11028061 11028060 - RIREX_LTR 8828 0.0190 (57/2997) 0 * Os_TE_738500 Os_TE_738496 Chr10 11022882 11026048 + SEVERIN-2 1952 0.1376 (406/2950) 1 Intact * Os_TE_738493 Chr10 11021702 11021703 + TWIF 586 0.1661 (489/2944) 0 * Os_TE_738492 Os_TE_738492 Chr10 11021695 11021694 - ORSiTETNOOT00134 607 0.1604 (471/2937) 0 * Os_TE_738493 Os_TE_738491 Chr10 11021637 11020444 + COPIA1-LTR_OS 9292 0.1377 (409/2971) 1 Solo_LTR * Os_TE_738476 Chr10 11011634 11011633 - TEMPINDAS 4259 0.0120 (6/501) 0 * * Os_TE_738475 Chr10 11011526 11011527 - RIREX_LTR 8828 0.1395 (42/301) 0 * * Os_TE_738472 Chr10 11011072 11011073 - ORSiTERTOOT00271 11428 0.8701 (2571/2955) 0 * * Os_TE_738470 Chr10 11010768 11010769 - RETROSAT3_LTR 11537 0.8664 (2594/2994) 0 * Os_TE_738469 Os_TE_738469 Chr10 11010764 11010763 + RETROSAT2LTRA 3112 0.8647 (2570/2972) 0 * Os_TE_738470 Os_TE_738466 Chr10 11009525 11009526 + RIREX_LTR 8828 0.0003 (1/2995) 0 * * Os_TE_738463 Chr10 11008280 11008279 + SC-4_LTR 5218 0.0003 (1/2996) 0 * * Os_TE_738459 Chr10 11006666 11006665 + ENSPM4_OS 11610 0.0017 (5/2972) 0 * * Os_TE_738453 Chr10 11003589 11003588 - RIRE3_LTR 12054 0.0017 (5/2904) 0 * * Os_TE_738440 Chr10 11000532 11000794 - ORSgTETNOOT00053 263 0.2036 (363/1783) 1 Intact * Os_TE_738439 Chr10 11000269 11000268 + ORSgTEMT00100531 325 0.0301 (55/1829) 0 * * Os_TE_738423 Chr10 10987957 10987958 - CPSC5_LTR 5141 0.0013 (4/2987) 0 * Os_TE_738422 Os_TE_738422 Chr10 10987953 10987952 + CPSC5_LTR 5141 0.0013 (4/2985) 0 * Os_TE_738423 Os_TE_738421 Chr10 10987591 10987590 - RIREX_LTR 8828 0.0003 (1/2999) 0 * * Os_TE_738412 Chr10 10982856 10982857 + GYPSY-A_LTR 8951 0.0003 (1/2910) 0 * * Os_TE_738400 Chr10 10980219 10982549 + CRM-LTR_OS 7749 0.1417 (398/2808) 1 Intact * Os_TE_738399 Chr10 10980108 10980107 - ORSgTEMT00900892 250 0.8634 (2496/2891) 0 * * Os_TE_738395 Chr10 10979369 10979368 + OSTE33 1012 0.0013 (4/2991) 0 * * Os_TE_738393 Chr10 10978361 10978362 + BAJIELTR 4500 0.0018 (5/2813) 0 * * Os_TE_738382 Chr10 10975334 10971857 - SZ-40LTR 2465 0.1367 (409/2991) 1 Intact Os_TE_738378 Os_TE_738378 Chr10 10971857 10975334 + SZ-40LTR 2465 0.1360 (407/2992) 1 Intact Os_TE_738382 Os_TE_738376 Chr10 10971185 10971184 + RETRO2A_LTR 12895 0.0004 (1/2836) 0 * * Os_TE_738358 Chr10 10967601 10967602 - ORSgTETNOOT00754 253 0.8689 (2585/2975) 0 * Os_TE_738357 Os_TE_738357 Chr10 10967599 10967598 + ORSgTETNOOT01998 254 0.8672 (2541/2930) 0 * Os_TE_738358 Os_TE_738355 Chr10 10965785 10965784 - TRUNCATOR 2918 0.0175 (51/2915) 0 * * Os_TE_738350 Chr10 10964245 10964246 + MDR2 6967 0.3473 (215/619) 0 * * Os_TE_738335 Chr10 10960630 10965700 - LINE-4_OS 3662 0.1683 (404/2401) 1 Intact * Os_TE_738334 Chr10 10960525 10960526 + RIREX_LTR 8828 0.8668 (2558/2951) 0 * Os_TE_738333 Os_TE_738333 Chr10 10960521 10960520 - RIREX_LTR 8828 0.8672 (2573/2967) 0 * Os_TE_738334 Os_TE_738332 Chr10 10960268 10960269 - ORSgTEMT00500675 140 0.0007 (2/2949) 0 * Os_TE_738331 Os_TE_738331 Chr10 10960266 10960265 - ORSgTETNOOT00118 134 0.0007 (2/2995) 0 * Os_TE_738332 Os_TE_738329 Chr10 10959382 10959383 + ORSgTEMT06100010 269 0.8681 (2599/2994) 0 * Os_TE_738328 Os_TE_738328 Chr10 10959380 10959379 - ORSgTEMT06100010 269 0.8677 (2597/2993) 0 * Os_TE_738329 Os_TE_738325 Chr10 10958516 10958517 + RIREX_LTR 8828 0.0003 (1/2992) 0 * Os_TE_738324 Os_TE_738324 Chr10 10958512 10958511 - RIREX_LTR 8828 0.0003 (1/2986) 0 * Os_TE_738325 Os_TE_738272 Chr10 10950521 10950522 - AMYLTP 383 0.0007 (2/2882) 0 * * Os_TE_738263 Chr10 10947029 10947030 + RETROSAT3_LTR 11537 0.0102 (30/2941) 0 * Os_TE_738262 Os_TE_738262 Chr10 10947025 10947024 - RETROSAT3_LTR 11537 0.0104 (31/2972) 0 * Os_TE_738263 Os_TE_738206 Chr10 10789060 10789061 + ORSiTERTOOT00028 8600 0.0101 (29/2868) 0 * * Os_TE_738194 Chr10 10786483 10786484 - RETRO1_LTR 8314 0.1228 (359/2923) 0 * * Os_TE_738178 Chr10 10785203 10785204 - RIRE2_LTR 11306 0.0297 (85/2864) 0 * Os_TE_738177 Os_TE_738177 Chr10 10785199 10785198 + RIRE2_LTR 11306 0.0281 (83/2959) 0 * Os_TE_738178 Os_TE_738164 Chr10 10782190 10782191 - ORSiTERT00200154 9386 0.1527 (425/2783) 0 * Os_TE_738163 Os_TE_738163 Chr10 10782184 10782183 + TRUNCATOR 2918 0.1982 (579/2922) 0 * Os_TE_738164 Os_TE_738139 Chr10 10775613 10775614 - COPIA2-LTR_OS 6433 0.0017 (5/2897) 0 * Os_TE_738138 Os_TE_738138 Chr10 10775609 10775608 + COPIA2-LTR_OS 6433 0.0017 (5/2894) 0 * Os_TE_738139 Os_TE_738112 Chr10 10767447 10767446 - OLO24 345 0.8751 (2586/2955) 0 * * Os_TE_738108 Chr10 10766556 10766555 - TRUNCATOR 2918 0.0177 (52/2940) 0 * * Os_TE_738090 Chr10 10762345 10762344 - ORSiTERT00200154 9386 0.0177 (52/2936) 0 * * Os_TE_738086 Chr10 10760335 10760334 + DS-RICE4N 715 0.0101 (30/2975) 0 * * Os_TE_738072 Chr10 10756141 10756140 - ORSgTETN00200001 10994 0.0151 (39/2575) 0 * * Os_TE_738056 Chr10 10749428 10749427 + ORSgTEMT01601122 212 0.6480 (1918/2960) 0 * * Os_TE_738054 Chr10 10748108 10748107 - SZ-33LTR 575 0.0023 (5/2218) 0 * * Os_TE_738053 Chr10 10747925 10747926 - TRUNCATOR2_LTR 2904 0.0009 (1/1073) 0 * Os_TE_738052 Os_TE_738052 Chr10 10747921 10747920 + ORSiTERTOOT00028 8600 0.0005 (1/1977) 0 * Os_TE_738053 Os_TE_738051 Chr10 10747889 10747890 + RETROSAT2LTR 12796 0.4866 (1179/2423) 0 * * Os_TE_738038 Chr10 10741047 10741048 - RIRE2_LTR 11306 0.0003 (1/2927) 0 * * Os_TE_738034 Chr10 10739599 10739600 + Cassandra_OS-LTR 764 0.6568 (1962/2987) 0 * * Os_TE_738001 Chr10 10724366 10724367 + RIREX_LTR 8828 0.0003 (1/2994) 0 * Os_TE_738000 Os_TE_738000 Chr10 10724362 10724361 - RIREX_LTR 8828 0.0003 (1/2995) 0 * Os_TE_738001 Os_TE_737998 Chr10 10724029 10723754 - ORSgTEMT04600037 279 0.1977 (590/2985) 1 Intact Os_TE_737996 Os_TE_737996 Chr10 10723752 10724029 + ORSgTEMT04600037 279 0.1984 (587/2958) 1 Intact Os_TE_737998 Os_TE_737977 Chr10 10715555 10715556 - ORSgTEMT01700216 124 0.6988 (2095/2998) 0 * * Os_TE_737973 Chr10 10712882 10713106 - ORSgTEMT02400246 177 0.1166 (342/2932) 1 Intact * Os_TE_737972 Chr10 10712517 10712238 - SUSU 279 0.8822 (2614/2963) 1 Intact Os_TE_737968 Os_TE_737968 Chr10 10712238 10712517 + ORSgTEMT05000092 279 0.8828 (2629/2978) 1 Intact Os_TE_737972 Os_TE_737946 Chr10 10705606 10705607 - RPO_OS 1983 0.0017 (5/2955) 0 * * Os_TE_737945 Chr10 10705167 10705166 - ORSgTEMT01601493 303 0.0020 (6/2981) 0 * * Os_TE_737943 Chr10 10704384 10704383 - RETRO2A_LTR 12895 0.0129 (33/2552) 0 * * Os_TE_737919 Chr10 10698139 10698138 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * * Os_TE_737902 Chr10 10693963 10693964 - ORSiTERTOOT00269 10834 0.0124 (37/2994) 0 * * Os_TE_737900 Chr10 10692864 10692865 + GYPSY-A_LTR 8951 0.0121 (36/2976) 0 * Os_TE_737899 Os_TE_737899 Chr10 10692860 10692859 - SZ-40LTR 2465 0.0121 (36/2982) 0 * Os_TE_737900 Os_TE_737889 Chr10 10685068 10685067 - ORSgTEMT00900099 250 0.0003 (1/2923) 0 * * Os_TE_737884 Chr10 10683499 10683500 - ORSgTETN00200001 10994 0.1141 (336/2944) 0 * Os_TE_737883 Os_TE_737883 Chr10 10683497 10683496 + SPMLIKE 10989 0.1215 (360/2964) 0 * Os_TE_737884 Os_TE_737866 Chr10 10667899 10667900 - ORSgTETN00200001 10994 0.0110 (33/2987) 0 * Os_TE_737865 Os_TE_737865 Chr10 10667897 10667896 + SPMLIKE 10989 0.0110 (33/2991) 0 * Os_TE_737866 Os_TE_737852 Chr10 10659804 10659805 - SZ-9LTR 965 0.0104 (31/2991) 0 * Os_TE_737851 Os_TE_737851 Chr10 10659800 10659799 + SZ-9LTR 965 0.0100 (30/2991) 0 * Os_TE_737852 Os_TE_737823 Chr10 10649850 10649849 - SZ-9LTR 965 0.1202 (360/2996) 0 * * Os_TE_737781 Chr10 10630326 10630327 - RIREX_LTR 8828 0.0184 (55/2994) 0 * * Os_TE_737623 Chr10 10582454 10582453 - MUDRN3_OS 903 0.0024 (7/2978) 0 * * Os_TE_737596 Chr10 10576566 10575770 - CACTA-G1 797 0.2294 (450/1962) 1 Intact Os_TE_737595 Os_TE_737595 Chr10 10575770 10576566 + CACTA-G1 797 0.2347 (461/1964) 1 Intact Os_TE_737596 Os_TE_737591 Chr10 10573835 10573836 + CACTA-H 1152 0.0005 (1/2058) 0 * * Os_TE_737587 Chr10 10572350 10572351 + NDNA1TNA_OS 334 0.0274 (47/1718) 0 * * Os_TE_737584 Chr10 10572008 10572304 - ORSgTEMT00100894 327 0.3289 (621/1888) 1 Intact * Os_TE_737583 Chr10 10571961 10571960 - NDNA1TNA_OS 334 0.0247 (48/1945) 0 * * Os_TE_737580 Chr10 10570382 10570381 - ORSgTETN00200001 10994 0.4181 (1204/2880) 0 * * Os_TE_737578 Chr10 10569433 10569434 - OSTE20 496 0.0245 (73/2974) 0 * Os_TE_737577 Os_TE_737577 Chr10 10569428 10569427 + OSTE20 496 0.0262 (78/2977) 0 * Os_TE_737578 Os_TE_737576 Chr10 10568287 10568288 + INDITTO 263 0.4446 (1297/2917) 0 * Os_TE_737575 Os_TE_737575 Chr10 10568285 10568284 - INDITTO 263 0.4414 (1289/2920) 0 * Os_TE_737576 Os_TE_737569 Chr10 10567538 10567314 + ORSgTEMT02400041 225 0.6519 (1717/2634) 1 Intact Os_TE_737567 Os_TE_737567 Chr10 10567314 10567532 - ORSgTEMT02400148 214 0.6139 (1735/2826) 1 Intact Os_TE_737569 Os_TE_737566 Chr10 10567139 10567140 + ORSgTEMT01602051 240 0.0003 (1/2997) 0 * * Os_TE_737560 Chr10 10562510 10562511 + ORSgTEMT01701663 106 0.8223 (2411/2932) 0 * * Os_TE_737513 Chr10 10539053 10539052 + RETROSAT4_LTR 13504 0.0010 (1/956) 0 * * Os_TE_737510 Chr10 10533614 10533398 + COWARD 200 0.4691 (554/1181) 1 Intact * Os_TE_737506 Chr10 10530712 10530711 - F524 291 0.0004 (1/2728) 0 * * Os_TE_737505 Chr10 10530570 10530569 + MDR1 7383 0.8230 (2414/2933) 0 * * Os_TE_737454 Chr10 10505737 10504171 - MERMITED 1572 0.2071 (527/2545) 1 Intact Os_TE_737453 Os_TE_737453 Chr10 10504167 10505735 - MERMITED 1572 0.1896 (553/2916) 1 Intact Os_TE_737454 Os_TE_737452 Chr10 10503873 10503720 - STOWAWAY50_OS 174 0.1818 (545/2997) 1 Intact Os_TE_737450 Os_TE_737450 Chr10 10503720 10503873 + ORSgTEMT01700505 154 0.1835 (550/2997) 1 Intact Os_TE_737452 Os_TE_737444 Chr10 10501318 10501647 + ORSgTEMT00100560 340 0.1851 (549/2966) 1 Intact * Os_TE_737443 Chr10 10501269 10501268 + ORSgTEMT01700513 151 0.0004 (1/2838) 0 * * Os_TE_737442 Chr10 10501118 10501117 + ORSgTEMT01700741 196 0.8140 (2425/2979) 0 * Os_TE_737441 Os_TE_737441 Chr10 10501117 10501118 + STOWAWAY1_OS 149 0.7415 (1549/2089) 0 * Os_TE_737442 Os_TE_737437 Chr10 10499970 10499969 + ORSgTEMT01900005 333 0.0072 (4/557) 0 * * Os_TE_737436 Chr10 10499799 10499800 - ENSPM_OS 9843 0.6904 (1231/1783) 0 * * Os_TE_737429 Chr10 10496827 10496828 + RIREX_LTR 8828 0.0003 (1/2895) 0 * Os_TE_737428 Os_TE_737428 Chr10 10496823 10496822 - RIREX_LTR 8828 0.0003 (1/2945) 0 * Os_TE_737429 Os_TE_737427 Chr10 10496390 10496391 - COPIA1-LTR_OS 9292 0.8226 (2421/2943) 0 * Os_TE_737426 Os_TE_737426 Chr10 10496386 10496385 + COPIA1-LTR_OS 9292 0.8254 (2453/2972) 0 * Os_TE_737427 Os_TE_737423 Chr10 10494697 10494696 + ORSgTEMT01601934 207 0.0014 (4/2889) 0 * Os_TE_737422 Os_TE_737422 Chr10 10494696 10494697 + ORSgTEMT01601934 207 0.0014 (4/2875) 0 * Os_TE_737423 Os_TE_737414 Chr10 10493406 10493407 - ORSgTEMT02900061 318 0.8249 (2450/2970) 0 * * Os_TE_737403 Chr10 10490845 10490844 + SEVERIN-2 1952 0.0071 (4/562) 0 * * Os_TE_737388 Chr10 10481670 10481671 - COPI2_LTR 4733 0.0013 (4/2968) 0 * Os_TE_737387 Os_TE_737387 Chr10 10481666 10481665 + COPI2_LTR 4733 0.0013 (4/2968) 0 * Os_TE_737388 Os_TE_737365 Chr10 10476145 10476146 - MuDR4_OS 7610 0.8229 (2421/2942) 0 * Os_TE_737364 Os_TE_737364 Chr10 10476139 10476138 - MuDR4_OS 7610 0.8261 (2471/2991) 0 * Os_TE_737365 Os_TE_737231 Chr10 10428974 10428975 + UNIQUE 158 0.0017 (5/2975) 0 * Os_TE_737230 Os_TE_737230 Chr10 10428972 10428971 - UNIQUE 158 0.0010 (3/2985) 0 * Os_TE_737231 Os_TE_737167 Chr10 10406665 10406666 - RETRO2_LTR 12874 0.0087 (26/2972) 0 * * Os_TE_737160 Chr10 10404848 10404847 + SZ-46LTR 3360 0.0003 (1/2967) 0 * * Os_TE_737153 Chr10 10404134 10404135 + ORSgTERTOOT00009 12852 0.0031 (9/2943) 0 * Os_TE_737152 Os_TE_737152 Chr10 10404130 10404129 - RETRO2_LTR 12874 0.0027 (8/2975) 0 * Os_TE_737153 Os_TE_737140 Chr10 10398609 10398608 + ORSiCMCM00100019 2717 0.0011 (3/2705) 0 * * Os_TE_737097 Chr10 10380398 10380397 - TRUNCATOR 2918 0.3156 (916/2902) 0 * Os_TE_737096 Os_TE_737096 Chr10 10380397 10380398 + TRUNCATOR 2918 0.3381 (1003/2967) 0 * Os_TE_737097 Os_TE_737084 Chr10 10375894 10363317 + RETROSAT2LTR 12796 0.0995 (296/2974) 1 Intact Os_TE_737061 Os_TE_737061 Chr10 10363315 10375894 - RETROSAT2LTR 12796 0.1056 (315/2984) 1 Intact Os_TE_737084 Os_TE_737050 Chr10 10357549 10357550 + AMYLTP 383 0.3012 (896/2975) 0 * Os_TE_737049 Os_TE_737049 Chr10 10357541 10357540 - AMYLTP 383 0.3054 (912/2986) 0 * Os_TE_737050 Os_TE_737042 Chr10 10354998 10354999 + STOWAWAY18_OS 216 0.0003 (1/2979) 0 * * Os_TE_737035 Chr10 10352018 10352019 + TRUNCATOR 2918 0.1141 (340/2981) 0 * * Os_TE_737031 Chr10 10350357 10350358 + MDR2 6967 0.0003 (1/2980) 0 * * Os_TE_737029 Chr10 10350143 10350144 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_737028 Os_TE_737028 Chr10 10350139 10350138 + COPIA2-LTR_OS 6433 0.0003 (1/2986) 0 * Os_TE_737029 Os_TE_737027 Chr10 10350124 10350125 + TWIFBIG 3567 0.0003 (1/2993) 0 * Os_TE_737026 Os_TE_737026 Chr10 10350117 10350116 - ORSiTETNOOT00156 3648 0.0003 (1/2995) 0 * Os_TE_737027 Os_TE_737006 Chr10 10337363 10337364 + TWIFBIG 3567 0.0024 (6/2482) 0 * Os_TE_737005 Os_TE_737005 Chr10 10337356 10337355 - ORSiTETNOOT00216 3569 0.0004 (1/2495) 0 * Os_TE_737006 Os_TE_736991 Chr10 10333799 10333800 + COPI2_LTR 4733 0.0010 (3/2972) 0 * Os_TE_736990 Os_TE_736990 Chr10 10333795 10333794 - COPI2_LTR 4733 0.0007 (2/2967) 0 * Os_TE_736991 Os_TE_736983 Chr10 10330065 10330066 - TRUNCATOR 2918 0.0003 (1/2989) 0 * * Os_TE_736945 Chr10 10315539 10315538 + ORSiOTOT00000037 220 0.0391 (117/2990) 0 * * Os_TE_736942 Chr10 10315038 10315039 + SPMLIKE 10989 0.0400 (119/2974) 0 * * Os_TE_736939 Chr10 10314566 10314567 + SPMLIKE 10989 0.0004 (1/2741) 0 * Os_TE_736938 Os_TE_736938 Chr10 10314564 10314563 - ORSgTETN00200001 10994 0.0004 (1/2751) 0 * Os_TE_736939 Os_TE_736928 Chr10 10312863 10312864 - ORSgTETN00200001 10994 0.0013 (4/2967) 0 * Os_TE_736927 Os_TE_736927 Chr10 10312861 10312860 + SPMLIKE 10989 0.0020 (6/2951) 0 * Os_TE_736928 Os_TE_736919 Chr10 10306158 10306159 + RETRO2A_LTR 12895 0.0024 (7/2916) 0 * Os_TE_736918 Os_TE_736918 Chr10 10306154 10306153 - RETRO1_LTR 8314 0.0024 (7/2923) 0 * Os_TE_736919 Os_TE_736905 Chr10 10298323 10298324 + MDR2 6967 0.0023 (7/2989) 0 * Os_TE_736904 Os_TE_736904 Chr10 10298315 10298314 - MDR2 6967 0.0023 (7/2987) 0 * Os_TE_736905 Os_TE_736895 Chr10 10294257 10294258 - COPI2_LTR 4733 0.0017 (5/2988) 0 * * Os_TE_736887 Chr10 10292020 10284406 - RIRE7_LTR 7615 0.1869 (547/2926) 1 Intact Os_TE_736875 Os_TE_736875 Chr10 10284405 10292020 + RIRE7_LTR 7615 0.1906 (546/2865) 1 Intact Os_TE_736887 Os_TE_736867 Chr10 10278317 10278316 - MERMITED 1572 0.0004 (1/2792) 0 * * Os_TE_736836 Chr10 10262867 10262868 - ORSgTERT00201216 11284 0.0018 (1/571) -1 * * Os_TE_736831 Chr10 10262008 10262009 - SZ-25LTR 330 0.0004 (1/2827) 0 * * Os_TE_736818 Chr10 10256471 10256470 - TYPEM 227 0.0003 (1/2984) 0 * * Os_TE_736804 Chr10 10254408 10254407 + STOWAWAY51_OS 246 0.0003 (1/2962) 0 * * Os_TE_736785 Chr10 10245140 10245141 + ORSgTEMT01701672 139 0.0017 (1/575) 0 * * Os_TE_736784 Chr10 10244775 10244776 + ENSPM4_OS 11610 0.0202 (12/593) 0 * * Os_TE_736776 Chr10 10238630 10238631 - RIRE2_LTR 11306 0.0017 (1/589) 0 * * Os_TE_736774 Chr10 10238496 10238497 - COPIA1-LTR_OS 9292 0.0017 (1/577) 0 * * Os_TE_736762 Chr10 10230639 10230638 - COPI2_LTR 4733 0.0724 (216/2984) 0 * * Os_TE_736749 Chr10 10223469 10223468 + DITTO 244 0.0003 (1/2987) 0 * Os_TE_736748 Os_TE_736748 Chr10 10223468 10223469 + ORSgTEMT00901202 248 0.0003 (1/2988) 0 * Os_TE_736749 Os_TE_736736 Chr10 10220646 10220647 + RIREX_LTR 8828 0.0003 (1/2996) 0 * Os_TE_736735 Os_TE_736735 Chr10 10220642 10220641 - RIRE2_LTR 11306 0.0003 (1/2996) 0 * Os_TE_736736 Os_TE_736680 Chr10 10203258 10203259 - RETRO1_LTR 8314 0.0003 (1/2979) 0 * Os_TE_736679 Os_TE_736679 Chr10 10203254 10203253 + RETRO2A_LTR 12895 0.0003 (1/2985) 0 * Os_TE_736680 Os_TE_736638 Chr10 10178435 10178436 - RIREX_LTR 8828 0.0206 (60/2913) 0 * Os_TE_736637 Os_TE_736637 Chr10 10178431 10178430 + RIREX_LTR 8828 0.0191 (56/2931) 0 * Os_TE_736638 Os_TE_736633 Chr10 10174319 10174318 + ORSgTEMT02400206 225 0.3165 (947/2992) 0 * * Os_TE_736612 Chr10 10166450 10166449 + OSTE20 496 0.0014 (4/2926) 0 * * Os_TE_736605 Chr10 10162910 10162909 - STOWAWAY51_OS 246 0.0003 (1/2986) 0 * * Os_TE_736602 Chr10 10162854 10162853 + TNR2A 152 0.0203 (59/2909) 0 * * Os_TE_736593 Chr10 10159053 10159054 - MuDR2_OS 6770 0.0187 (55/2940) 0 * Os_TE_736592 Os_TE_736592 Chr10 10159049 10159048 + MuDR2_OS 6770 0.0167 (49/2935) 0 * Os_TE_736593 Os_TE_736591 Chr10 10158989 10158593 + OSTE9 421 0.8874 (2340/2637) 1 Intact Os_TE_736590 Os_TE_736590 Chr10 10158591 10158987 + OSTE9 421 0.8952 (2511/2805) 1 Intact Os_TE_736591 Os_TE_736575 Chr10 10156174 10156175 - SZ-22_LTR 4403 0.0003 (1/2946) 0 * * Os_TE_736564 Chr10 10154519 10154520 + AMYLTP 383 0.0037 (11/2944) 0 * Os_TE_736563 Os_TE_736563 Chr10 10154510 10154509 - AMYLTP 383 0.0041 (12/2947) 0 * Os_TE_736564 Os_TE_736462 Chr10 10094846 10094847 + COPI2_LTR 4733 0.0003 (1/2968) 0 * * Os_TE_736457 Chr10 10091260 10091261 + AMYLTP 383 0.0047 (14/2987) 0 * Os_TE_736456 Os_TE_736456 Chr10 10091252 10091251 - AMYLTP 383 0.0047 (14/2988) 0 * Os_TE_736457 Os_TE_736455 Chr10 10091164 10091165 + INDITTO 263 0.0006 (1/1565) 0 * Os_TE_736454 Os_TE_736454 Chr10 10091162 10091161 - INDITTO 263 0.0004 (1/2756) 0 * Os_TE_736455 Os_TE_736452 Chr10 10090736 10090737 - RIRE2_LTR 11306 0.0004 (1/2701) 0 * Os_TE_736451 Os_TE_736451 Chr10 10090732 10090731 + RIRE2_LTR 11306 0.0004 (1/2739) 0 * Os_TE_736452 Os_TE_736450 Chr10 10088424 10088425 - SZ-22_LTR 4403 0.0003 (1/2989) 0 * * Os_TE_736425 Chr10 10075428 10079004 - ORSiTETNOOT00200 3563 0.0897 (254/2832) 1 Intact * Os_TE_736419 Chr10 10074427 10074426 - COPIA2-LTR_OS 6433 0.0003 (1/2916) 0 * * Os_TE_736355 Chr10 10022493 10022494 + TWIFBIG 3567 0.0004 (1/2446) 0 * * Os_TE_736354 Chr10 10022442 10022441 - ORSgTEMT00700002 381 0.0004 (1/2449) 0 * * Os_TE_736343 Chr10 10020308 10020307 - DS-RICE2N 613 0.0006 (1/1695) 0 * * Os_TE_736341 Chr10 10020272 10020273 + NDNA1TNA_OS 334 0.0240 (49/2045) 0 * * Os_TE_736325 Chr10 10015385 10015386 + COPIA2-LTR_OS 6433 0.0050 (15/2984) 0 * Os_TE_736324 Os_TE_736324 Chr10 10015381 10015380 - COPIA2-LTR_OS 6433 0.0054 (16/2975) 0 * Os_TE_736325 Os_TE_736322 Chr10 10013940 10013939 - COPI2_LTR 4733 0.0037 (11/2980) 0 * * Os_TE_736321 Chr10 10012977 10012978 + MUDRN5_OS 374 0.0003 (1/2990) 0 * * Os_TE_736302 Chr10 10008018 10008019 - TRUNCATOR2_LTR 2904 0.1412 (234/1657) 0 * Os_TE_736301 Os_TE_736301 Chr10 10008014 10008013 - TRUNCATOR2_LTR 2904 0.1411 (232/1644) 0 * Os_TE_736302 Os_TE_736278 Chr10 9993641 9993642 + OSTE33 1012 0.0007 (2/2908) 0 * Os_TE_736277 Os_TE_736277 Chr10 9993632 9993631 + OSTE33 1012 0.0003 (1/2921) 0 * Os_TE_736278 Os_TE_736275 Chr10 9991590 9991591 + ORSgTETNOOT00908 242 0.0003 (1/2860) 0 * * Os_TE_736267 Chr10 9989232 9989233 - SZLTR 1249 0.0003 (1/2990) 0 * * Os_TE_736246 Chr10 9979669 9979670 + TRUNCATOR 2918 0.0003 (1/2975) 0 * * Os_TE_736242 Chr10 9974214 9974215 + DS-RICE4N 715 0.0311 (17/547) 0 * * Os_TE_736239 Chr10 9974010 9974009 - TRUNCATOR2_LTR 2904 0.0007 (2/2845) 0 * * Os_TE_736212 Chr10 9965825 9965824 + SPMLIKE 10989 0.0423 (126/2976) 0 * * Os_TE_736200 Chr10 9959701 9959702 + SZ-43LTR 4039 0.0145 (43/2966) 0 * Os_TE_736199 Os_TE_736199 Chr10 9959697 9959696 - SZ-43LTR 4039 0.0142 (42/2967) 0 * Os_TE_736200 Os_TE_736189 Chr10 9957115 9957116 - ORSgTETN00200001 10994 0.0003 (1/2970) 0 * * Os_TE_736185 Chr10 9956515 9956516 - RETROSAT2LTR 12796 0.0195 (57/2917) 0 * * Os_TE_736174 Chr10 9954124 9954125 - RIREX_LTR 8828 0.0003 (1/2910) 0 * Os_TE_736173 Os_TE_736173 Chr10 9954120 9954119 + RIREX_LTR 8828 0.0003 (1/2919) 0 * Os_TE_736174 Os_TE_736171 Chr10 9953779 9953778 - TRUNCATOR 2918 0.4489 (1269/2827) 0 * Os_TE_736170 Os_TE_736170 Chr10 9953775 9953776 + TRUNCATOR 2918 0.4798 (1416/2951) 0 * Os_TE_736171 Os_TE_736169 Chr10 9953638 9953639 + RIREX_LTR 8828 0.0190 (56/2953) 0 * Os_TE_736168 Os_TE_736168 Chr10 9953634 9953633 - RIREX_LTR 8828 0.0192 (57/2963) 0 * Os_TE_736169 Os_TE_736162 Chr10 9949307 9949308 - COPI2_LTR 4733 0.0043 (13/2991) 0 * Os_TE_736161 Os_TE_736161 Chr10 9949303 9949302 + COPI2_LTR 4733 0.0047 (14/2992) 0 * Os_TE_736162 Os_TE_736159 Chr10 9948065 9948064 - ENSPM4_OS 11610 0.0144 (43/2985) 0 * * Os_TE_736156 Chr10 9946867 9946866 + RIRE2_LTR 11306 0.0003 (1/2985) 0 * * Os_TE_736153 Chr10 9945004 9945005 - RIRE3A_LTR 10580 0.0003 (1/2992) 0 * Os_TE_736152 Os_TE_736152 Chr10 9945000 9944999 + RIRE3A_LTR 10580 0.0003 (1/2990) 0 * Os_TE_736153 Os_TE_736127 Chr10 9934640 9934639 - TRUNCATOR 2918 0.4599 (1366/2970) 0 * * Os_TE_736125 Chr10 9934505 9934506 - RIRE3A_LTR 10580 0.0003 (1/2988) 0 * Os_TE_736124 Os_TE_736124 Chr10 9934501 9934500 + ORSiTERTOOT00027 10853 0.0003 (1/2993) 0 * Os_TE_736125 Os_TE_736099 Chr10 9931773 9931774 + SPMLIKE 10989 0.0058 (17/2943) 0 * * Os_TE_736092 Chr10 9925477 9925478 + ORSiTERTOOT00296 5553 0.0003 (1/2985) 0 * * Os_TE_736081 Chr10 9921920 9921919 - SC-3_LTR 5748 0.0007 (2/2981) 0 * * Os_TE_736070 Chr10 9920089 9920088 - MuDR4_OS 7610 0.0013 (4/2988) 0 * * Os_TE_736005 Chr10 9892178 9892179 - TELIA 141 0.0007 (2/2953) 0 * Os_TE_736004 Os_TE_736004 Chr10 9892170 9892169 + TELIA 141 0.0007 (2/2946) 0 * Os_TE_736005 Os_TE_736003 Chr10 9891933 9891934 - ORSgTETN00200001 10994 0.0130 (13/1002) 0 * Os_TE_736002 Os_TE_736002 Chr10 9891931 9891930 + SPMLIKE 10989 0.0159 (12/756) 0 * Os_TE_736003 Os_TE_736001 Chr10 9891399 9891137 - INDITTO 263 0.8141 (714/877) 1 Intact Os_TE_736000 Os_TE_736000 Chr10 9891137 9891399 + INDITTO 263 0.8187 (718/877) 1 Intact Os_TE_736001 Os_TE_735990 Chr10 9886468 9886469 - OSR3_LTR 5201 0.0028 (2/709) 0 * Os_TE_735989 Os_TE_735989 Chr10 9886464 9886463 + OSR3_LTR 5201 0.0008 (2/2426) 0 * Os_TE_735990 Os_TE_735966 Chr10 9877140 9877139 - ORSgTEMT02400179 221 0.4889 (1456/2978) 0 * Os_TE_735965 Os_TE_735965 Chr10 9877137 9877138 + ORSgTEMT02400034 225 0.4871 (1450/2977) 0 * Os_TE_735966 Os_TE_735914 Chr10 9844321 9844322 - RIRE5-LTR_OS 6427 0.0003 (1/2988) 0 * * Os_TE_735911 Chr10 9843907 9843906 - AMYLTP 383 0.7757 (2290/2952) 0 * * Os_TE_735882 Chr10 9836948 9836947 + STOWAWAY50_OS 174 0.0013 (4/2981) 0 * * Os_TE_735863 Chr10 9828621 9828620 + HELITRON7_OS 10153 0.0017 (5/2987) 0 * * Os_TE_735852 Chr10 9819872 9819873 + TRUNCATOR 2918 0.0003 (1/2989) 0 * * Os_TE_735849 Chr10 9817560 9817559 - TRUNCATOR 2918 0.1902 (563/2960) 0 * Os_TE_735848 Os_TE_735848 Chr10 9817559 9817560 + TRUNCATOR 2918 0.1995 (584/2927) 0 * Os_TE_735849 Os_TE_735841 Chr10 9816757 9816758 - TRUNCATOR2_LTR 2904 0.2970 (884/2976) 0 * Os_TE_735840 Os_TE_735840 Chr10 9816753 9816752 + ORSiCMCM00100019 2717 0.2800 (822/2936) 0 * Os_TE_735841 Os_TE_735837 Chr10 9814104 9804853 - SZ-40LTR 2465 0.0865 (259/2993) 1 Intact Os_TE_735832 Os_TE_735832 Chr10 9804853 9814104 + SZ-40LTR 2465 0.0852 (255/2993) 1 Intact Os_TE_735837 Os_TE_735806 Chr10 9792931 9792932 + OSTE33 1012 0.0067 (20/2983) 0 * Os_TE_735805 Os_TE_735805 Chr10 9792922 9792921 + OSTE33 1012 0.0064 (19/2981) 0 * Os_TE_735806 Os_TE_735804 Chr10 9791649 9791650 + RIRE2_LTR 11306 0.0003 (1/2992) 0 * * Os_TE_735802 Chr10 9791534 9791535 + RETRO2A_LTR 12895 0.0017 (5/2997) 0 * Os_TE_735801 Os_TE_735801 Chr10 9791530 9791529 - RETRO1_LTR 8314 0.0017 (5/2982) 0 * Os_TE_735802 Os_TE_735778 Chr10 9785237 9785238 - ORSiTERT00100062 5674 0.0007 (2/2996) 0 * Os_TE_735777 Os_TE_735777 Chr10 9785233 9785232 + OSTONOR1_LTR 6440 0.0007 (2/2993) 0 * Os_TE_735778 Os_TE_735774 Chr10 9783973 9783974 + RIREX_LTR 8828 0.0044 (13/2984) 0 * * Os_TE_735770 Chr10 9781663 9781664 + TWIFBIG 3567 0.0007 (2/2845) 0 * * Os_TE_735736 Chr10 9761743 9761744 + TWIF 586 0.0017 (5/2922) 0 * Os_TE_735735 Os_TE_735735 Chr10 9761736 9761735 - ORSiTETNOOT00200 3563 0.0017 (5/2919) 0 * Os_TE_735736 Os_TE_735723 Chr10 9758244 9758245 - TRUNCATOR2_LTR 2904 0.0181 (54/2989) 0 * Os_TE_735722 Os_TE_735722 Chr10 9758240 9758239 + ORSiCMCM00100019 2717 0.0174 (52/2985) 0 * Os_TE_735723 Os_TE_735721 Chr10 9758147 9758148 - SC-4_LTR 5218 0.0023 (7/2984) 0 * Os_TE_735720 Os_TE_735720 Chr10 9758143 9758142 + SC-4_LTR 5218 0.0023 (7/2984) 0 * Os_TE_735721 Os_TE_735719 Chr10 9757303 9757304 + RIREX_LTR 8828 0.0003 (1/2996) 0 * Os_TE_735718 Os_TE_735718 Chr10 9757299 9757298 - RIREX_LTR 8828 0.0003 (1/2997) 0 * Os_TE_735719 Os_TE_735698 Chr10 9748044 9748045 + RIRE2_LTR 11306 0.1788 (504/2819) 0 * * Os_TE_735695 Chr10 9747599 9747598 + RIRE2_LTR 11306 0.0003 (1/2977) 0 * * Os_TE_735685 Chr10 9745756 9745757 - SZ-35LTR 3853 0.1260 (357/2834) 0 * * Os_TE_735682 Chr10 9744862 9744863 + RIRE2_LTR 11306 0.0003 (1/2964) 0 * * Os_TE_735680 Chr10 9743989 9743990 - COPI2_LTR 4733 0.0003 (1/2983) 0 * * Os_TE_735661 Chr10 9730014 9730015 - ORSgTEMT02400179 221 0.0017 (5/2991) 0 * Os_TE_735660 Os_TE_735660 Chr10 9730013 9730012 - TYPEM 227 0.0017 (5/2990) 0 * Os_TE_735661 Os_TE_735653 Chr10 9727053 9727054 + ORSiTERT00100080 6173 0.0050 (15/2988) 0 * * Os_TE_735649 Chr10 9725877 9725878 + ORSiTERTOOT00034 791 0.0250 (75/2998) 0 * * Os_TE_735640 Chr10 9721097 9721096 + TRUNCATOR 2918 0.0207 (62/2991) 0 * * Os_TE_735636 Chr10 9720682 9720683 + RIRE3_LTR 12054 0.0224 (67/2992) 0 * Os_TE_735635 Os_TE_735635 Chr10 9720678 9720677 - RIRE3_LTR 12054 0.0184 (55/2982) 0 * Os_TE_735636 Os_TE_735625 Chr10 9712890 9712891 - RIREX_LTR 8828 0.0017 (5/2982) 0 * * Os_TE_735590 Chr10 9707140 9707139 - DITAILA 257 0.0003 (1/2931) 0 * Os_TE_735589 Os_TE_735589 Chr10 9707136 9707137 + DITAILA 257 0.0003 (1/2905) 0 * Os_TE_735590 Os_TE_735558 Chr10 9697785 9697786 + RIREX_LTR 8828 0.0200 (55/2748) 0 * * Os_TE_735520 Chr10 9689076 9674599 + CACTA-B 1103 0.6781 (1860/2743) 1 Intact Os_TE_735488 Os_TE_735488 Chr10 9674599 9689074 - ORSgTETN00200001 10994 0.6522 (1688/2588) 1 Intact Os_TE_735520 Os_TE_735478 Chr10 9670512 9671954 - DS-RICE2N 613 0.0959 (264/2754) 1 Intact * Os_TE_735477 Chr10 9669986 9669985 + STOWAWAY45_OS 266 0.0015 (4/2727) 0 * * Os_TE_735475 Chr10 9669179 9669178 - ORSgTEMT02000003 197 0.0196 (54/2760) 0 * * Os_TE_735473 Chr10 9667771 9667772 + RETRO2A_LTR 12895 0.0054 (15/2756) 0 * Os_TE_735472 Os_TE_735472 Chr10 9667767 9667766 - RETRO1_LTR 8314 0.0055 (15/2745) 0 * Os_TE_735473 Os_TE_735391 Chr10 9633253 9666077 - GYPSO_LTR 9828 0.7616 (2265/2974) 1 Intact * Os_TE_735389 Chr10 9632909 9632910 + SZ-67LTR 1540 0.0336 (77/2289) 0 * Os_TE_735388 Os_TE_735388 Chr10 9632905 9632904 - SZ-67LTR 1540 0.0279 (83/2973) 0 * Os_TE_735389 Os_TE_735387 Chr10 9632437 9630995 + DS-RICE4N 715 0.0861 (257/2985) 1 Intact Os_TE_735386 Os_TE_735386 Chr10 9630995 9632437 - DS-RICE2N 613 0.0857 (256/2986) 1 Intact Os_TE_735387 Os_TE_735385 Chr10 9629998 9629999 - TRUNCATOR2_LTR 2904 0.0237 (71/2993) 0 * Os_TE_735384 Os_TE_735384 Chr10 9629994 9629993 - TRUNCATOR2_LTR 2904 0.0234 (70/2994) 0 * Os_TE_735385 Os_TE_735382 Chr10 9629109 9629110 - LINE-6_OS 4886 0.6863 (1956/2850) 0 * * Os_TE_735375 Chr10 9626367 9626366 - TNR2A 152 0.0254 (76/2996) 0 * * Os_TE_735374 Chr10 9626168 9626169 - DS-RICE4N 715 0.0894 (267/2987) 0 * * Os_TE_735364 Chr10 9621516 9621515 + HELITRON7_OS 10153 0.0013 (4/2998) 0 * * Os_TE_735352 Chr10 9618265 9618264 - COPIA2-LTR_OS 6433 0.0003 (1/2984) 0 * * Os_TE_735350 Chr10 9617129 9617128 + ORSgTETN00200005 1121 0.0757 (226/2986) 0 * Os_TE_735349 Os_TE_735349 Chr10 9617125 9617126 + CACTA-B 1103 0.0799 (239/2992) 0 * Os_TE_735350 Os_TE_735331 Chr10 9603740 9603739 - TEMPINDAS 4259 0.0017 (5/2900) 0 * * Os_TE_735325 Chr10 9601795 9601796 - COPIA2-LTR_OS 6433 0.0007 (2/2970) 0 * Os_TE_735324 Os_TE_735324 Chr10 9601791 9601790 + COPIA2-LTR_OS 6433 0.0007 (2/2942) 0 * Os_TE_735325 Os_TE_735287 Chr10 9584491 9584492 - TRUNCATOR 2918 0.8958 (2219/2477) 0 * * Os_TE_735282 Chr10 9582037 9582038 + TRUNCATOR2_LTR 2904 0.0061 (15/2442) 0 * * Os_TE_735280 Chr10 9581537 9581538 + RIREX_LTR 8828 0.1041 (244/2344) 0 * Os_TE_735279 Os_TE_735279 Chr10 9581533 9581532 - RIRE2_LTR 11306 0.1009 (238/2359) 0 * Os_TE_735280 Os_TE_735277 Chr10 9580988 9580987 - CLOUD-6 508 0.0012 (3/2459) 0 * * Os_TE_735276 Chr10 9580352 9573883 - GYPSY-A_LTR 8951 0.1028 (252/2452) 1 Intact Os_TE_735265 Os_TE_735265 Chr10 9573883 9580352 + SZ-40LTR 2465 0.1107 (268/2421) 1 Intact Os_TE_735276 Os_TE_735263 Chr10 9573410 9573411 - ORSiTERT00200154 9386 0.1786 (529/2962) 0 * * Os_TE_735262 Chr10 9570597 9570596 - ORMOSIA 482 0.0898 (266/2962) 0 * * Os_TE_735261 Chr10 9568841 9568842 + SPMLIKE 10989 0.0007 (2/2936) 0 * Os_TE_735260 Os_TE_735260 Chr10 9568839 9568838 - ORSgTETN00200001 10994 0.0007 (2/2928) 0 * Os_TE_735261 Os_TE_735253 Chr10 9567909 9567908 - STOWAWAY51_OS 246 0.0137 (39/2856) 0 * * Os_TE_735244 Chr10 9565861 9565862 - TRUNCATOR2_LTR 2904 0.0003 (1/2973) 0 * Os_TE_735243 Os_TE_735243 Chr10 9565857 9565856 + TRUNCATOR2_LTR 2904 0.0003 (1/2976) 0 * Os_TE_735244 Os_TE_735229 Chr10 9557588 9557587 - TRUNCATOR 2918 0.8726 (2295/2630) 0 * Os_TE_735228 Os_TE_735228 Chr10 9557587 9557588 + TRUNCATOR 2918 0.8933 (2654/2971) 0 * Os_TE_735229 Os_TE_735227 Chr10 9557565 9557564 + ORSgTERT00201162 5982 0.3934 (843/2143) 0 * * Os_TE_735223 Chr10 9557049 9557048 + CACTA-B 1103 0.4209 (1230/2922) 0 * Os_TE_735222 Os_TE_735222 Chr10 9557045 9557046 + ORSgTETN00200005 1121 0.4324 (1288/2979) 0 * Os_TE_735223 Os_TE_735204 Chr10 9543020 9543019 + TRUNCATOR 2918 0.0003 (1/2977) 0 * Os_TE_735203 Os_TE_735203 Chr10 9543019 9543020 - TRUNCATOR 2918 0.0003 (1/2980) 0 * Os_TE_735204 Os_TE_735202 Chr10 9538620 9538621 - RIREX_LTR 8828 0.0017 (5/2937) 0 * * Os_TE_735201 Chr10 9538489 9538490 + DASIA-2 1198 0.2749 (796/2896) 0 * Os_TE_735200 Os_TE_735200 Chr10 9538481 9538480 - DASIA-2 1198 0.2915 (855/2933) 0 * Os_TE_735201 Os_TE_735197 Chr10 9537491 9537492 - ORSgTEMT00300141 415 0.2168 (644/2971) 0 * * Os_TE_735134 Chr10 9511450 9511451 - RIREX_LTR 8828 0.3228 (768/2379) 0 * * Os_TE_735115 Chr10 9501445 9501444 + TWIFB1 3737 0.0005 (1/1823) -1 * * Os_TE_735090 Chr10 9477185 9477186 + RIREX_LTR 8828 0.0005 (1/2002) 0 * Os_TE_735089 Os_TE_735089 Chr10 9477181 9477180 - RIREX_LTR 8828 0.0005 (1/2041) 0 * Os_TE_735090 Os_TE_735085 Chr10 9476567 9476566 - COPIA2-LTR_OS 6433 0.0009 (2/2151) 0 * Os_TE_735084 Os_TE_735084 Chr10 9476565 9476566 + COPIA2-LTR_OS 6433 0.0008 (2/2662) 0 * Os_TE_735085 Os_TE_735070 Chr10 9473375 9473376 - RIRE2_LTR 11306 0.0309 (69/2234) 0 * * Os_TE_735057 Chr10 9471817 9472058 + ORSgTETNOOT00908 242 0.8537 (1208/1415) 1 Intact * Os_TE_735054 Chr10 9471529 9471528 - ENSPM4_OS 11610 0.5080 (733/1443) 0 * * Os_TE_734939 Chr10 9392945 9392946 - AMYLTP 383 0.0007 (2/2965) 0 * Os_TE_734938 Os_TE_734938 Chr10 9392937 9392936 + AMYLTP 383 0.0007 (2/2964) 0 * Os_TE_734939 Os_TE_734918 Chr10 9384064 9384065 + KRISPIE 956 0.0003 (1/2880) 0 * Os_TE_734917 Os_TE_734917 Chr10 9384059 9384058 - ORSiTEMT01300001 950 0.0003 (1/2896) 0 * Os_TE_734918 Os_TE_734889 Chr10 9379392 9379393 - RIRE3_LTR 12054 0.1629 (480/2947) 0 * Os_TE_734888 Os_TE_734888 Chr10 9379391 9379390 + RIRE3_LTR 12054 0.1544 (454/2941) 0 * Os_TE_734889 Os_TE_734885 Chr10 9377594 9377595 + SC-10_LTR 4920 0.1960 (586/2990) 0 * Os_TE_734884 Os_TE_734884 Chr10 9377590 9377589 - SC-10_LTR 4920 0.1988 (594/2988) 0 * Os_TE_734885 Os_TE_734857 Chr10 9362589 9367237 - COPI1_LTR 4721 0.7273 (2179/2996) 1 Intact * Os_TE_734838 Chr10 9350086 9350087 + ORSgTEMT00800058 376 0.0008 (2/2359) 0 * * Os_TE_734837 Chr10 9350080 9350081 + AMYLTP 383 0.2572 (713/2772) 0 * Os_TE_734836 Os_TE_734836 Chr10 9350072 9350071 - AMYLTP 383 0.2497 (718/2876) 0 * Os_TE_734837 Os_TE_734835 Chr10 9349390 9349389 - COPIA2-LTR_OS 6433 0.0003 (1/2966) 0 * * Os_TE_734833 Chr10 9348687 9348686 - ORSgTETN00200001 10994 0.2353 (694/2949) 0 * * Os_TE_734759 Chr10 9317640 9317641 + RETROSAT4_LTR 13504 0.0260 (75/2887) 0 * Os_TE_734758 Os_TE_734758 Chr10 9317636 9317635 - RETROSAT4_LTR 13504 0.0260 (75/2888) 0 * Os_TE_734759 Os_TE_734687 Chr10 9291464 9304375 + TRUNCATOR 2918 0.1147 (338/2946) 1 Intact * Os_TE_734667 Chr10 9286268 9288688 - SEVERIN-2 1952 0.0806 (239/2964) 1 Intact * Os_TE_734663 Chr10 9284139 9284140 + ENSPM4_OS 11610 0.0416 (121/2906) 0 * * Os_TE_734660 Chr10 9283041 9283042 + ENSPM5_OS 9581 0.0408 (122/2992) 0 * Os_TE_734659 Os_TE_734659 Chr10 9283039 9283038 - ENSPM6_OS 9815 0.0382 (114/2983) 0 * Os_TE_734660 Os_TE_734654 Chr10 9280479 9280480 - ORSiTERT00100062 5674 0.0737 (219/2973) 0 * Os_TE_734653 Os_TE_734653 Chr10 9280475 9280474 + OSTONOR1_LTR 6440 0.0721 (214/2970) 0 * Os_TE_734654 Os_TE_734640 Chr10 9276444 9276445 - MuDR4_OS 7610 0.0003 (1/2985) 0 * Os_TE_734639 Os_TE_734639 Chr10 9276437 9276436 - MuDR4_OS 7610 0.0003 (1/2986) 0 * Os_TE_734640 Os_TE_734638 Chr10 9275763 9275764 + MERMITEJ 1498 0.0007 (2/2988) 0 * Os_TE_734637 Os_TE_734637 Chr10 9275755 9275754 - MERMITEJ 1498 0.0007 (2/2987) 0 * Os_TE_734638 Os_TE_734572 Chr10 9236819 9236818 + RIREX_LTR 8828 0.0013 (4/2982) 0 * * Os_TE_734570 Chr10 9236001 9236002 - ORSgTERT00201216 11284 0.2422 (721/2977) 0 * Os_TE_734569 Os_TE_734569 Chr10 9235998 9235997 - RIRE2_LTR 11306 0.2727 (734/2692) 0 * Os_TE_734570 Os_TE_734563 Chr10 9232626 9232627 - TRUNCATOR2_LTR 2904 0.0013 (4/2987) 0 * Os_TE_734562 Os_TE_734562 Chr10 9232622 9232621 + ORSiCMCM00100019 2717 0.0010 (3/2979) 0 * Os_TE_734563 Os_TE_734548 Chr10 9227503 9227502 + RETRO2A_LTR 12895 0.0014 (1/739) -1 * * Os_TE_734529 Chr10 9213000 9204396 - MuDR3_OS 8604 0.8811 (2556/2901) 1 Intact * Os_TE_734511 Chr10 9202866 9202867 - GYPSY-A_LTR 8951 0.0007 (1/1411) 0 * Os_TE_734510 Os_TE_734510 Chr10 9202862 9202861 + GYPSY-A_LTR 8951 0.0008 (1/1208) 0 * Os_TE_734511 Os_TE_734482 Chr10 9193938 9193939 + CRM-LTR_OS 7749 0.0249 (74/2970) 0 * Os_TE_734481 Os_TE_734481 Chr10 9193934 9193933 - CRM-LTR_OS 7749 0.0246 (73/2967) 0 * Os_TE_734482 Os_TE_734479 Chr10 9193381 9193382 - INDITTO 263 0.0175 (52/2972) 0 * * Os_TE_734473 Chr10 9191316 9191317 - RIREX_LTR 8828 0.0734 (218/2972) 0 * Os_TE_734472 Os_TE_734472 Chr10 9191312 9191311 + RIREX_LTR 8828 0.0746 (222/2975) 0 * Os_TE_734473 Os_TE_734458 Chr10 9186817 9186818 - ORSgTETNOOT02417 265 0.0185 (55/2965) 0 * Os_TE_734457 Os_TE_734457 Chr10 9186815 9186814 - INDITTO 263 0.0186 (55/2959) 0 * Os_TE_734458 Os_TE_734429 Chr10 9179478 9179477 - RETROSAT4_LTR 13504 0.0008 (2/2422) 0 * * Os_TE_734414 Chr10 9174675 9174676 - ORSgTETNOOT00053 263 0.4586 (1374/2996) 0 * Os_TE_734413 Os_TE_734413 Chr10 9174673 9174672 - INDITTO 263 0.4579 (1370/2992) 0 * Os_TE_734414 Os_TE_734403 Chr10 9172832 9172833 + Cassandra_OS-LTR 764 0.3571 (1037/2904) 0 * Os_TE_734402 Os_TE_734402 Chr10 9172828 9172827 - Cassandra_OS-LTR 764 0.3443 (993/2884) 0 * Os_TE_734403 Os_TE_734389 Chr10 9167568 9167569 + COPIA2-LTR_OS 6433 0.0017 (5/2964) 0 * Os_TE_734388 Os_TE_734388 Chr10 9167564 9167563 - COPIA2-LTR_OS 6433 0.0017 (5/2982) 0 * Os_TE_734389 Os_TE_734357 Chr10 9156958 9156957 + TRUNCATOR 2918 0.0264 (79/2989) 0 * Os_TE_734356 Os_TE_734356 Chr10 9156957 9156958 - TRUNCATOR 2918 0.0258 (77/2986) 0 * Os_TE_734357 Os_TE_734352 Chr10 9154484 9154483 - RETROSAT2LTRA 3112 0.1726 (515/2983) 0 * * Os_TE_734351 Chr10 9154222 9154223 - SZ-22_LTR 4403 0.0040 (12/2988) 0 * Os_TE_734350 Os_TE_734350 Chr10 9154218 9154217 + ORSiTERTOOT00226 792 0.0037 (11/2986) 0 * Os_TE_734351 Os_TE_734348 Chr10 9153758 9153759 + TRUNCATOR 2918 0.0007 (2/2978) 0 * * Os_TE_734312 Chr10 9137147 9137148 - ORSgTEMT02000040 196 0.0505 (151/2990) 0 * * Os_TE_734286 Chr10 9118711 9118710 - RIREX_LTR 8828 0.0161 (48/2973) 0 * * Os_TE_734285 Chr10 9117841 9117842 - ORSiTERTOOT00427 5125 0.0003 (1/2971) 0 * Os_TE_734284 Os_TE_734284 Chr10 9117837 9117836 + ORSiTERTOOT00427 5125 0.0003 (1/2973) 0 * Os_TE_734285 Os_TE_734259 Chr10 9105286 9105287 + RIREX_LTR 8828 0.0007 (2/2983) 0 * Os_TE_734258 Os_TE_734258 Chr10 9105282 9105281 - RIREX_LTR 8828 0.0007 (2/2979) 0 * Os_TE_734259 Os_TE_734255 Chr10 9101733 9101734 + RETRO2A_LTR 12895 0.0167 (50/2999) 0 * * Os_TE_734249 Chr10 9098811 9098812 - RETROSAT2LTRA 3112 0.0020 (6/2982) 0 * Os_TE_734248 Os_TE_734248 Chr10 9098807 9098806 + RETROSAT3_LTR 11537 0.0020 (6/2981) 0 * Os_TE_734249 Os_TE_734246 Chr10 9098133 9098134 - ORSiTERTOOT00083 822 0.4756 (1425/2996) 0 * * Os_TE_734242 Chr10 9095126 9095125 + STOWAWAY51_OS 246 0.0895 (264/2949) 0 * Os_TE_734241 Os_TE_734241 Chr10 9095120 9095121 - STOWAWAY51_OS 246 0.0882 (260/2949) 0 * Os_TE_734242 Os_TE_734229 Chr10 9087563 9087564 - TRUNCATOR2_LTR 2904 0.0990 (296/2989) 0 * Os_TE_734228 Os_TE_734228 Chr10 9087559 9087558 + ORSiCMCM00100019 2717 0.0943 (281/2979) 0 * Os_TE_734229 Os_TE_734210 Chr10 9078106 9078105 - CENTRE 280 0.0003 (1/2949) 0 * * Os_TE_734202 Chr10 9075488 9075487 - RIREX_LTR 8828 0.0004 (1/2765) 0 * * Os_TE_734174 Chr10 9069406 9069407 - RIRE5-LTR_OS 6427 0.2341 (701/2995) 0 * Os_TE_734173 Os_TE_734173 Chr10 9069399 9069398 + RIRE5-LTR_OS 6427 0.2258 (673/2980) 0 * Os_TE_734174 Os_TE_734171 Chr10 9067272 9067273 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * * Os_TE_734167 Chr10 9065511 9065512 + ORSgTEMT00600272 361 0.2336 (693/2966) 0 * Os_TE_734166 Os_TE_734166 Chr10 9065509 9065508 - ORSgTEMT00600524 364 0.2310 (686/2970) 0 * Os_TE_734167 Os_TE_734164 Chr10 9065455 9065456 - ENSPM4_OS 11610 0.0044 (13/2975) 0 * * Os_TE_734160 Chr10 9064845 9064846 - RIRE2_LTR 11306 0.1809 (516/2853) 0 * * Os_TE_734158 Chr10 9064706 9064707 - MDR2 6967 0.2537 (747/2945) 0 * Os_TE_734157 Os_TE_734157 Chr10 9064698 9064697 + MDR2 6967 0.2480 (728/2935) 0 * Os_TE_734158 Os_TE_734155 Chr10 9062348 9062347 + RIRE3A_LTR 10580 0.0003 (1/2914) 0 * * Os_TE_734154 Chr10 9062302 9062303 + ENSPM4_OS 11610 0.0021 (4/1871) -1 * * Os_TE_734146 Chr10 9057420 9057421 - RIRE3A_LTR 10580 0.0278 (83/2987) 0 * * Os_TE_734120 Chr10 9042594 9042595 - RIREX_LTR 8828 0.0073 (22/2997) 0 * Os_TE_734119 Os_TE_734119 Chr10 9042590 9042589 + RIREX_LTR 8828 0.0080 (24/2995) 0 * Os_TE_734120 Os_TE_734111 Chr10 9040929 9040928 + TRUNCATOR 2918 0.0164 (49/2986) 0 * * Os_TE_734042 Chr10 9003388 9003389 - OSMU5 4881 0.0007 (2/2993) 0 * * Os_TE_734017 Chr10 8993178 8993179 + ORSiTERTOOT00296 5553 0.0003 (1/2999) 0 * Os_TE_734016 Os_TE_734016 Chr10 8993174 8993173 - SC-3_LTR 5748 0.0003 (1/2998) 0 * Os_TE_734017 Os_TE_733992 Chr10 8988683 8988684 + ORSiTERTOOT00226 792 0.0003 (1/2959) 0 * Os_TE_733991 Os_TE_733991 Chr10 8988679 8988678 - SZ-22_LTR 4403 0.0003 (1/2957) 0 * Os_TE_733992 Os_TE_733974 Chr10 8973815 8973816 - RETROSAT2LTRA 3112 0.0007 (2/2969) 0 * Os_TE_733973 Os_TE_733973 Chr10 8973811 8973810 + RETROSAT3_LTR 11537 0.0007 (2/2969) 0 * Os_TE_733974 Os_TE_733971 Chr10 8973476 8970072 + ORSiCMCM00100019 2717 0.0999 (296/2963) 1 Intact Os_TE_733967 Os_TE_733967 Chr10 8970072 8973476 - TRUNCATOR2_LTR 2904 0.1008 (299/2965) 1 Intact Os_TE_733971 Os_TE_733904 Chr10 8944106 8944107 + COPIA2-LTR_OS 6433 0.0326 (97/2980) 0 * * Os_TE_733902 Chr10 8943311 8943310 - TYPEU1 380 0.0007 (2/2987) 0 * * Os_TE_733901 Chr10 8942817 8942818 - ORSgTERT00201216 11284 0.2487 (745/2996) 0 * Os_TE_733900 Os_TE_733900 Chr10 8942813 8942812 - RIRE2_LTR 11306 0.2492 (746/2994) 0 * Os_TE_733901 Os_TE_733896 Chr10 8940098 8940099 + RIRE2_LTR 11306 0.0017 (5/2987) 0 * Os_TE_733895 Os_TE_733895 Chr10 8940094 8940093 - RIRE2_LTR 11306 0.0017 (5/2990) 0 * Os_TE_733896 Os_TE_733890 Chr10 8936816 8936815 + STOWAWAY21_OS 243 0.0024 (7/2959) 0 * * Os_TE_733888 Chr10 8934999 8934998 - TRUNCATOR 2918 0.0003 (1/2991) 0 * Os_TE_733887 Os_TE_733887 Chr10 8934998 8934999 + TRUNCATOR 2918 0.0003 (1/2991) 0 * Os_TE_733888 Os_TE_733886 Chr10 8934776 8934777 + CRM-LTR_OS 7749 0.0007 (2/2990) 0 * Os_TE_733885 Os_TE_733885 Chr10 8934772 8934771 - CRM-LTR_OS 7749 0.0007 (2/2989) 0 * Os_TE_733886 Os_TE_733884 Chr10 8934401 8934400 - TRUNCATOR 2918 0.0043 (13/2993) 0 * Os_TE_733883 Os_TE_733883 Chr10 8934400 8934401 + TRUNCATOR 2918 0.0043 (13/2993) 0 * Os_TE_733884 Os_TE_733882 Chr10 8934147 8934148 - SZ-22_LTR 4403 0.0003 (1/2998) 0 * * Os_TE_733879 Chr10 8933192 8933191 + ORSgTETNOOT00908 242 0.0037 (11/2986) 0 * * Os_TE_733856 Chr10 8915821 8915820 + KIDDOB 280 0.0697 (208/2984) 0 * * Os_TE_733851 Chr10 8913180 8913179 + SPMLIKE 10989 0.0195 (19/976) 0 * * Os_TE_733836 Chr10 8908516 8908515 + ORSiTERTOOT00034 791 0.0003 (1/2989) 0 * * Os_TE_733798 Chr10 8892616 8892615 + ORSgTEMT01700768 151 0.0014 (4/2911) 0 * Os_TE_733797 Os_TE_733797 Chr10 8892610 8892611 + ORSgTEMT01700702 154 0.0017 (5/2916) 0 * Os_TE_733798 Os_TE_733783 Chr10 8890057 8890058 + ORSiTERTOOT00046 285 0.0004 (1/2686) 0 * * Os_TE_733694 Chr10 8870260 8870261 + SC-8_LTR 4951 0.0007 (2/2981) 0 * Os_TE_733693 Os_TE_733693 Chr10 8870256 8870255 - SC-8_LTR 4951 0.0007 (2/2985) 0 * Os_TE_733694 Os_TE_733690 Chr10 8869287 8869288 - TYPEM 227 0.0074 (22/2984) 0 * * Os_TE_733688 Chr10 8867084 8848897 - SC-3_LTR 5748 0.2064 (613/2970) 1 Intact * Os_TE_733679 Chr10 8845523 8845524 - MuDR4_OS 7610 0.0953 (283/2971) 0 * Os_TE_733678 Os_TE_733678 Chr10 8845517 8845516 - MuDR4_OS 7610 0.0949 (283/2981) 0 * Os_TE_733679 Os_TE_733651 Chr10 8835123 8835122 + STOWAWAY51_OS 246 0.0017 (5/2902) 0 * Os_TE_733650 Os_TE_733650 Chr10 8835117 8835118 - STOWAWAY51_OS 246 0.0017 (5/2897) 0 * Os_TE_733651 Os_TE_733649 Chr10 8834270 8834271 + HATOS1 3488 0.0007 (2/2900) 0 * Os_TE_733648 Os_TE_733648 Chr10 8834263 8834262 - HATOS1 3488 0.0007 (2/2898) 0 * Os_TE_733649 Os_TE_733639 Chr10 8831614 8831615 - TWIFB1 3737 0.0003 (1/2908) 0 * * Os_TE_733635 Chr10 8827656 8827657 - ORSgTETN00200001 10994 0.0984 (293/2979) 0 * Os_TE_733634 Os_TE_733634 Chr10 8827654 8827653 + SPMLIKE 10989 0.0993 (296/2982) 0 * Os_TE_733635 Os_TE_733632 Chr10 8826766 8826767 + ORSiTERTOOT00226 792 0.0003 (1/2995) 0 * Os_TE_733631 Os_TE_733631 Chr10 8826762 8826761 - SZ-22_LTR 4403 0.0003 (1/2996) 0 * Os_TE_733632 Os_TE_733629 Chr10 8826088 8826087 - ORSgTEMT00101129 160 0.0004 (1/2628) 0 * * Os_TE_733623 Chr10 8825496 8825497 + DS-RICE2N 613 0.1114 (285/2559) 0 * * Os_TE_733621 Chr10 8825049 8818492 - RETROSAT2LTRA 3112 0.7810 (2290/2932) 1 Intact * Os_TE_733611 Chr10 8817051 8817050 + ORSgTEMT00900079 241 0.0004 (1/2780) 0 * * Os_TE_733594 Chr10 8813463 8813464 + TRUNCATOR2_LTR 2904 0.0004 (1/2323) 0 * * Os_TE_733593 Chr10 8813452 8813453 + ORSiTERTOOT00226 792 0.0004 (1/2248) 0 * * Os_TE_733514 Chr10 8783492 8783493 - RIRE3A_LTR 10580 0.0334 (100/2993) 0 * Os_TE_733513 Os_TE_733513 Chr10 8783488 8783487 + RIRE3A_LTR 10580 0.0327 (98/2997) 0 * Os_TE_733514 Os_TE_733483 Chr10 8778224 8778223 - TRUNCATOR2_LTR 2904 0.6440 (1735/2694) 0 * * Os_TE_733437 Chr10 8762684 8762685 + ORSiTERTOOT00027 10853 0.0063 (2/319) 0 * * Os_TE_733313 Chr10 8691722 8691723 + ORSgTEMT00300069 394 0.0318 (93/2921) 0 * * Os_TE_733262 Chr10 8679110 8679109 + ORSgTEMT01601591 242 0.0148 (44/2969) 0 * Os_TE_733261 Os_TE_733261 Chr10 8679104 8679105 + STOWAWAY51_OS 246 0.0154 (46/2985) 0 * Os_TE_733262 Os_TE_733245 Chr10 8662259 8662258 - TRUNCATOR2_LTR 2904 0.0983 (293/2982) 0 * * Os_TE_733235 Chr10 8660496 8660497 - SZ-22_LTR 4403 0.0004 (1/2660) 0 * Os_TE_733234 Os_TE_733234 Chr10 8660492 8660491 + ORSiTERTOOT00226 792 0.0004 (1/2655) 0 * Os_TE_733235 Os_TE_733217 Chr10 8656432 8656433 + RETRO2_LTR 12874 0.0004 (1/2729) 0 * * Os_TE_733190 Chr10 8640759 8640760 - COPIA2-LTR_OS 6433 0.0004 (1/2720) 0 * * Os_TE_733189 Chr10 8640661 8640662 + RIREX_LTR 8828 0.0004 (1/2723) 0 * * Os_TE_733040 Chr10 8589362 8589361 - TRUNCATOR 2918 0.2516 (733/2913) 0 * * Os_TE_733034 Chr10 8587656 8587657 + TRUNCATOR 2918 0.0003 (1/2984) 0 * Os_TE_733033 Os_TE_733033 Chr10 8587650 8587649 - ORSiTERT00200154 9386 0.0003 (1/2981) 0 * Os_TE_733034 Os_TE_733032 Chr10 8586904 8586905 - RIREX_LTR 8828 0.0003 (1/2998) 0 * * Os_TE_733024 Chr10 8575660 8574286 + OSTE33 1012 0.7666 (1215/1585) 1 Intact Os_TE_733023 Os_TE_733023 Chr10 8574286 8575660 + OSTE33 1012 0.8645 (2278/2635) 1 Intact Os_TE_733024 Os_TE_733014 Chr10 8572586 8572585 - ORSgTEMT02400179 221 0.0003 (1/2954) 0 * * Os_TE_733009 Chr10 8570388 8570389 + NDNA1TNA_OS 334 0.0937 (276/2945) 0 * Os_TE_733008 Os_TE_733008 Chr10 8570386 8570385 - NDNA1TNA_OS 334 0.1016 (291/2864) 0 * Os_TE_733009 Os_TE_733003 Chr10 8566118 8569687 - ORSiTETNOOT00216 3569 0.0970 (287/2958) 1 Intact * Os_TE_732995 Chr10 8560677 8560678 - AMYLTP 383 0.0007 (2/2753) 0 * Os_TE_732994 Os_TE_732994 Chr10 8560669 8560668 + AMYLTP 383 0.0007 (2/2955) 0 * Os_TE_732995 Os_TE_732990 Chr10 8558346 8558347 - SZ-22_LTR 4403 0.0004 (1/2661) 0 * Os_TE_732989 Os_TE_732989 Chr10 8558342 8558341 + ORSiTERTOOT00226 792 0.0004 (1/2662) 0 * Os_TE_732990 Os_TE_732985 Chr10 8557762 8557761 - TRUNCATOR2_LTR 2904 0.1077 (291/2703) 0 * * Os_TE_732840 Chr10 8504627 8504628 - CRATA 4786 0.0077 (23/2995) 0 * Os_TE_732839 Os_TE_732839 Chr10 8504620 8504619 + CRATA 4786 0.0083 (25/2995) 0 * Os_TE_732840 Os_TE_732838 Chr10 8504464 8504465 - RIRE2_LTR 11306 0.0003 (1/2991) 0 * Os_TE_732837 Os_TE_732837 Chr10 8504460 8504459 + RIRE2_LTR 11306 0.0003 (1/2990) 0 * Os_TE_732838 Os_TE_732836 Chr10 8502844 8502845 - SZ-22_LTR 4403 0.0003 (1/2917) 0 * Os_TE_732835 Os_TE_732835 Chr10 8502840 8502839 + ORSiTERTOOT00097 759 0.0003 (1/2869) 0 * Os_TE_732836 Os_TE_732807 Chr10 8492148 8492147 + ORSiTERTOOT00226 792 0.0003 (1/2977) 0 * * Os_TE_732805 Chr10 8491381 8491380 + TRUNCATOR 2918 0.0003 (1/2974) 0 * Os_TE_732804 Os_TE_732804 Chr10 8491380 8491381 - TRUNCATOR 2918 0.0007 (2/2970) 0 * Os_TE_732805 Os_TE_732801 Chr10 8490258 8479485 + RETROSAT2LTR 12796 0.0984 (294/2987) 1 Intact * Os_TE_732749 Chr10 8474097 8474098 + TRUNCATOR 2918 0.1251 (284/2271) 0 * * Os_TE_732678 Chr10 8462989 8462990 + ORSiTERTOOT00034 791 0.0004 (1/2634) 0 * * Os_TE_732675 Chr10 8462582 8462583 + ORSiTERTOOT00226 792 0.0004 (1/2631) 0 * Os_TE_732674 Os_TE_732674 Chr10 8462578 8462577 - SZ-22_LTR 4403 0.0004 (1/2322) 0 * Os_TE_732675 Os_TE_732599 Chr10 8419774 8419775 + ORSiTERTOOT00226 792 0.0003 (1/2990) 0 * * Os_TE_732588 Chr10 8416766 8411518 - SZ-54A_LTR 5249 0.0976 (291/2982) 1 Intact * Os_TE_732571 Chr10 8404192 8404191 + NDNA1TNA_OS 334 0.0003 (1/2964) 0 * * Os_TE_732502 Chr10 8377743 8377742 + RIRE3_LTR 12054 0.0017 (5/2991) 0 * * Os_TE_732485 Chr10 8370344 8370343 - SZ-22_LTR 4403 0.0003 (1/2987) 0 * * Os_TE_732356 Chr10 8302797 8302798 + CRM-LTR_OS 7749 0.0003 (1/2984) 0 * Os_TE_732355 Os_TE_732355 Chr10 8302793 8302792 - CRM-LTR_OS 7749 0.0003 (1/2987) 0 * Os_TE_732356 Os_TE_732337 Chr10 8297621 8297622 - SC-8_LTR 4951 0.0003 (1/2984) 0 * * Os_TE_732335 Chr10 8297087 8297088 - SC-3_LTR 5748 0.0194 (18/926) 0 * Os_TE_732334 Os_TE_732334 Chr10 8297083 8297082 + ORSiTERTOOT00296 5553 0.0211 (19/899) 0 * Os_TE_732335 Os_TE_732329 Chr10 8294699 8294700 - CRM-LTR_OS 7749 0.0409 (122/2981) 0 * Os_TE_732328 Os_TE_732328 Chr10 8294695 8294694 + CRM-LTR_OS 7749 0.0403 (120/2979) 0 * Os_TE_732329 Os_TE_732307 Chr10 8289614 8289615 - RIRE3_LTR 12054 0.0044 (13/2988) 0 * * Os_TE_732273 Chr10 8284076 8284077 - CRM-LTR_OS 7749 0.0007 (2/2948) 0 * * Os_TE_732164 Chr10 8197659 8197658 + ORSiTERTOOT00226 792 0.0003 (1/2900) -1 * * Os_TE_732146 Chr10 8189528 8189529 + ORSiTERTOOT00226 792 0.0003 (1/2892) -1 * * Os_TE_732141 Chr10 8189024 8189025 + TRUNCATOR 2918 0.2693 (751/2789) -1 * * Os_TE_731953 Chr10 8096837 8096838 + CRM-LTR_OS 7749 0.0007 (2/2882) 0 * * Os_TE_731950 Chr10 8096802 8096801 - SZ-22_LTR 4403 0.0003 (1/2884) 0 * * Os_TE_731945 Chr10 8096480 8096479 + ORSiTERTOOT00074 4935 0.0007 (2/2905) 0 * * Os_TE_731943 Chr10 8096395 8096396 + ORSiTERTOOT00034 791 0.0004 (1/2770) -1 * * Os_TE_731920 Chr10 8093112 8093113 + ORSiTERTOOT00226 792 0.0023 (7/2998) 0 * * Os_TE_731903 Chr10 8090750 8090749 - SZ-22_LTR 4403 0.0017 (5/2999) 0 * * Os_TE_731900 Chr10 8090479 8090480 - SZ-22_LTR 4403 0.0033 (10/2996) 0 * * Os_TE_731746 Chr10 8047457 8047458 + ORSiTERTOOT00226 792 0.0016 (3/1898) 0 * * Os_TE_731660 Chr10 8022820 8022821 + ORSiTERTOOT00226 792 0.0015 (3/1993) 0 * Os_TE_731659 Os_TE_731659 Chr10 8022816 8022815 - SZ-22_LTR 4403 0.0015 (3/1993) 0 * Os_TE_731660 Os_TE_731658 Chr10 8022749 8022750 - SZ-22_LTR 4403 0.0005 (1/1994) 0 * * Os_TE_731652 Chr10 8021987 8021988 + SZ-22_LTR 4403 0.0010 (2/2000) 0 * Os_TE_731651 Os_TE_731651 Chr10 8021983 8021982 - SZ-22_LTR 4403 0.0010 (2/1997) 0 * Os_TE_731652 Os_TE_731649 Chr10 8021925 8021924 + ORSiTERTOOT00034 791 0.0025 (5/2011) 0 * * Os_TE_731589 Chr10 8001370 8001371 - RIREX_LTR 8828 0.0194 (49/2525) 0 * Os_TE_731588 Os_TE_731588 Chr10 8001366 8001365 + RIREX_LTR 8828 0.0194 (49/2528) 0 * Os_TE_731589 Os_TE_731587 Chr10 8001142 8001143 + COPIA2-LTR_OS 6433 0.0017 (5/2982) 0 * Os_TE_731586 Os_TE_731586 Chr10 8001138 8001137 - COPIA2-LTR_OS 6433 0.0017 (5/2979) 0 * Os_TE_731587 Os_TE_731585 Chr10 8000952 8000953 + RIREX_LTR 8828 0.0003 (1/2968) 0 * Os_TE_731584 Os_TE_731584 Chr10 8000948 8000947 - RIREX_LTR 8828 0.0003 (1/2971) 0 * Os_TE_731585 Os_TE_731568 Chr10 7995071 7995070 + ORSiTERTOOT00097 759 0.0003 (1/2984) 0 * * Os_TE_731566 Chr10 7994572 7994571 - RIRE7_LTR 7615 0.0003 (1/2978) 0 * * Os_TE_731530 Chr10 7972096 7972095 + ORSiTERTOOT00226 792 0.0003 (1/2912) 0 * * Os_TE_731513 Chr10 7969582 7969583 - SZ-22_LTR 4403 0.0003 (1/2977) 0 * * Os_TE_731500 Chr10 7966460 7966461 + SZ-22_LTR 4403 0.0003 (1/2958) 0 * * Os_TE_731459 Chr10 7959300 7959301 - SZ-22_LTR 4403 0.0003 (1/2984) 0 * Os_TE_731458 Os_TE_731458 Chr10 7959296 7959295 + ORSiTERTOOT00226 792 0.0003 (1/2983) 0 * Os_TE_731459 Os_TE_731456 Chr10 7958223 7958224 - SZ-22_LTR 4403 0.0010 (3/2992) 0 * Os_TE_731455 Os_TE_731455 Chr10 7958219 7958218 + ORSiTERTOOT00034 791 0.0007 (2/2995) 0 * Os_TE_731456 Os_TE_731410 Chr10 7944180 7944181 - RETROFIT3_LTR 5391 0.7789 (2329/2990) 0 * Os_TE_731409 Os_TE_731409 Chr10 7944176 7944175 + RETROFIT3_LTR 5391 0.7817 (2338/2991) 0 * Os_TE_731410 Os_TE_731408 Chr10 7943897 7943898 + SZ-22_LTR 4403 0.0010 (3/2992) 0 * Os_TE_731407 Os_TE_731407 Chr10 7943893 7943892 - SZ-22_LTR 4403 0.0010 (3/2990) 0 * Os_TE_731408 Os_TE_731400 Chr10 7941055 7941056 - STOWAWAY18_OS 216 0.2141 (170/794) -1 * Os_TE_731399 Os_TE_731399 Chr10 7941054 7941053 + STOWAWAY18_OS 216 0.1927 (148/768) -1 * Os_TE_731400 Os_TE_731394 Chr10 7939486 7939485 - NDNA2TNA_OS 346 0.0380 (99/2606) 0 * * Os_TE_731076 Chr10 7820052 7820053 - RIREX_LTR 8828 0.0007 (2/2994) 0 * Os_TE_731075 Os_TE_731075 Chr10 7820048 7820047 + RIREX_LTR 8828 0.0007 (2/2995) 0 * Os_TE_731076 Os_TE_731064 Chr10 7815188 7815189 + F569 228 0.0003 (1/2990) 0 * * Os_TE_731057 Chr10 7812712 7812711 - STOWAWAY44_OS 240 0.0099 (13/1317) 0 * * Os_TE_731047 Chr10 7806110 7806111 + RIRE3_LTR 12054 0.0003 (1/2885) 0 * * Os_TE_731025 Chr10 7801496 7801495 + RETROSAT3_LTR 11537 0.0107 (32/2980) 0 * * Os_TE_730929 Chr10 7779029 7779030 - RIREX_LTR 8828 0.0003 (1/2991) 0 * * Os_TE_730903 Chr10 7766393 7766394 - ORSgTEMT02000041 194 0.1037 (309/2981) 0 * * Os_TE_730902 Chr10 7766176 7766175 + F569 228 0.0003 (1/2989) 0 * * Os_TE_730901 Chr10 7766002 7766001 + ORSiTERTOOT00226 792 0.0010 (3/2989) 0 * * Os_TE_730900 Chr10 7765926 7765927 - RIREX_LTR 8828 0.0007 (2/2983) 0 * * Os_TE_730886 Chr10 7759191 7759192 + ORSgTETNOOT00908 242 0.0007 (2/2979) 0 * * Os_TE_730826 Chr10 7715386 7711421 + ORSiTETN00100011 676 0.4079 (308/755) 1 Intact Os_TE_730818 Os_TE_730818 Chr10 7711407 7715393 + DS-RICE4N 715 0.1022 (294/2876) 1 Intact Os_TE_730826 Os_TE_730814 Chr10 7710350 7710349 - TEMPINDAS 4259 0.1806 (519/2874) 0 * * Os_TE_730807 Chr10 7707177 7707178 - RETROSAT2LTR 12796 0.0007 (2/2875) 0 * * Os_TE_730763 Chr10 7689333 7689334 - TRUNCATOR2_LTR 2904 0.0980 (293/2989) 0 * Os_TE_730762 Os_TE_730762 Chr10 7689329 7689328 + TRUNCATOR2_LTR 2904 0.0951 (283/2975) 0 * Os_TE_730763 Os_TE_730756 Chr10 7687403 7687404 + RIRE2_LTR 11306 0.0003 (1/2980) 0 * * Os_TE_730751 Chr10 7687084 7687083 - RIREX_LTR 8828 0.0007 (2/2965) 0 * * Os_TE_730743 Chr10 7684135 7684134 - SZ-62LTR 3649 0.0957 (286/2990) 0 * * Os_TE_730725 Chr10 7674740 7674741 + COPIA2-LTR_OS 6433 0.0017 (5/2995) 0 * Os_TE_730724 Os_TE_730724 Chr10 7674736 7674735 - COPIA2-LTR_OS 6433 0.0017 (5/2994) 0 * Os_TE_730725 Os_TE_730711 Chr10 7662912 7662913 - ORSgTETN00200001 10994 0.0007 (2/2725) 0 * * Os_TE_730664 Chr10 7649095 7649096 + RIREX_LTR 8828 0.0003 (1/2985) 0 * Os_TE_730663 Os_TE_730663 Chr10 7649091 7649090 - RIREX_LTR 8828 0.0003 (1/2986) 0 * Os_TE_730664 Os_TE_730662 Chr10 7647798 7647797 - RIRE2_LTR 11306 0.0798 (236/2958) 0 * * Os_TE_730661 Chr10 7647755 7647756 + TRUNCATOR2_LTR 2904 0.0003 (1/2983) 0 * Os_TE_730660 Os_TE_730660 Chr10 7647751 7647750 - TRUNCATOR2_LTR 2904 0.0003 (1/2978) 0 * Os_TE_730661 Os_TE_730628 Chr10 7639205 7639204 - TNR2A 152 0.0331 (99/2987) 0 * * Os_TE_730605 Chr10 7624203 7624204 - MPING 430 0.0003 (1/2999) 0 * Os_TE_730604 Os_TE_730604 Chr10 7624201 7624200 + MPING 430 0.0003 (1/3000) 0 * Os_TE_730605 Os_TE_730527 Chr10 7600467 7611762 + RIRE2_LTR 11306 0.0999 (297/2972) 1 Intact * Os_TE_730520 Chr10 7598295 7598294 - TRUNCATOR 2918 0.1763 (504/2859) 0 * * Os_TE_730508 Chr10 7590619 7590620 + RIREX_LTR 8828 0.0003 (1/2996) 0 * Os_TE_730507 Os_TE_730507 Chr10 7590615 7590614 - RIREX_LTR 8828 0.0003 (1/2994) 0 * Os_TE_730508 Os_TE_730505 Chr10 7590400 7590401 + SZ-54_LTR 5203 0.0416 (113/2717) 0 * * Os_TE_730494 Chr10 7584309 7584310 + TRUNCATOR 2918 0.0004 (1/2536) 0 * * Os_TE_730492 Chr10 7584168 7584167 - COPIA2-LTR_OS 6433 0.0004 (1/2534) 0 * * Os_TE_730478 Chr10 7577540 7577541 + ORSiTERTOOT00296 5553 0.0007 (2/2985) 0 * Os_TE_730477 Os_TE_730477 Chr10 7577536 7577535 - SC-3_LTR 5748 0.0007 (2/2982) 0 * Os_TE_730478 Os_TE_730442 Chr10 7567646 7567645 + ORSgTEMT01400031 216 0.0004 (1/2818) -1 * * Os_TE_730438 Chr10 7565718 7565717 - RETRO1_LTR 8314 0.0165 (49/2972) 0 * * Os_TE_730436 Chr10 7564191 7564190 + ORSgTEMT02400041 225 0.0104 (31/2969) 0 * Os_TE_730435 Os_TE_730435 Chr10 7564189 7564190 - ORSgTEMT02400179 221 0.0114 (34/2986) 0 * Os_TE_730436 Os_TE_730415 Chr10 7558272 7558273 + CACTA-G1 797 0.0017 (5/2984) 0 * * Os_TE_730366 Chr10 7535873 7535872 + ORSgTEMT06000088 181 0.0004 (1/2827) 0 * * Os_TE_730328 Chr10 7525715 7525716 - MPING 430 0.0004 (1/2631) 0 * Os_TE_730327 Os_TE_730327 Chr10 7525713 7525712 + MPING 430 0.0004 (1/2671) 0 * Os_TE_730328 Os_TE_730302 Chr10 7513512 7513511 - STOWAWAY51_OS 246 0.0010 (3/2987) 0 * Os_TE_730301 Os_TE_730301 Chr10 7513506 7513507 + STOWAWAY51_OS 246 0.0010 (3/2983) 0 * Os_TE_730302 Os_TE_730300 Chr10 7509856 7509857 - SC-8_LTR 4951 0.0003 (1/2990) 0 * * Os_TE_730298 Chr10 7509112 7509113 - SC-3_LTR 5748 0.0003 (1/2987) 0 * * Os_TE_730296 Chr10 7509052 7509053 - SC-3_LTR 5748 0.0003 (1/2996) 0 * Os_TE_730295 Os_TE_730295 Chr10 7509048 7509047 + ORSiTERTOOT00296 5553 0.0003 (1/2996) 0 * Os_TE_730296 Os_TE_730276 Chr10 7500573 7500574 - SC-8_LTR 4951 0.0003 (1/2983) 0 * Os_TE_730275 Os_TE_730275 Chr10 7500569 7500568 + SC-8_LTR 4951 0.0003 (1/2983) 0 * Os_TE_730276 Os_TE_730274 Chr10 7500174 7500175 + COPIA2-LTR_OS 6433 0.0007 (2/2989) 0 * Os_TE_730273 Os_TE_730273 Chr10 7500170 7500169 - COPIA2-LTR_OS 6433 0.0007 (2/2990) 0 * Os_TE_730274 Os_TE_730152 Chr10 7451168 7451169 - RIREX_LTR 8828 0.0010 (3/2980) 0 * Os_TE_730151 Os_TE_730151 Chr10 7451164 7451163 + RIREX_LTR 8828 0.0007 (2/2975) 0 * Os_TE_730152 Os_TE_730146 Chr10 7450430 7450098 + NDNA1TNA_OS 334 0.0972 (263/2706) 1 Intact * Os_TE_730143 Chr10 7449957 7449958 - SZ-22_LTR 4403 0.0007 (2/2866) 0 * Os_TE_730142 Os_TE_730142 Chr10 7449953 7449952 + ORSiTERTOOT00226 792 0.0007 (2/2882) 0 * Os_TE_730143 Os_TE_730118 Chr10 7447983 7447984 - COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_730117 Os_TE_730117 Chr10 7447979 7447978 + COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_730118 Os_TE_730096 Chr10 7437848 7437849 - SC-8_LTR 4951 0.0003 (1/2967) 0 * Os_TE_730095 Os_TE_730095 Chr10 7437844 7437843 + ORSiTERTOOT00381 4988 0.0003 (1/2971) 0 * Os_TE_730096 Os_TE_730074 Chr10 7424025 7424026 - TRUNCATOR2_LTR 2904 0.0007 (2/2998) 0 * Os_TE_730073 Os_TE_730073 Chr10 7424021 7424020 + TRUNCATOR2_LTR 2904 0.0007 (2/2996) 0 * Os_TE_730074 Os_TE_730057 Chr10 7417415 7417416 + SC-8_LTR 4951 0.0007 (2/2978) 0 * Os_TE_730056 Os_TE_730056 Chr10 7417411 7417410 - SC-8_LTR 4951 0.0007 (2/2976) 0 * Os_TE_730057 Os_TE_730055 Chr10 7417374 7417375 - SC-3_LTR 5748 0.0003 (1/2985) 0 * Os_TE_730054 Os_TE_730054 Chr10 7417370 7417369 + ORSiTERTOOT00296 5553 0.0003 (1/2985) 0 * Os_TE_730055 Os_TE_730024 Chr10 7401463 7401464 + RETRO1_LTR 8314 0.0003 (1/2990) 0 * Os_TE_730023 Os_TE_730023 Chr10 7401459 7401458 - RETRO2A_LTR 12895 0.0003 (1/2991) 0 * Os_TE_730024 Os_TE_730019 Chr10 7399478 7399477 + ORSgTEMT00101674 340 0.3065 (917/2992) 0 * Os_TE_730018 Os_TE_730018 Chr10 7399477 7399478 + NDNA1TNA_OS 334 0.3056 (915/2994) 0 * Os_TE_730019 Os_TE_730010 Chr10 7396522 7396523 + ORSgTETNOOT02019 240 0.0175 (52/2968) 0 * Os_TE_730009 Os_TE_730009 Chr10 7396521 7396520 + ORSgTETNOOT00908 242 0.0175 (52/2965) 0 * Os_TE_730010 Os_TE_729996 Chr10 7392515 7392516 - SC-3_LTR 5748 0.0117 (35/2983) 0 * * Os_TE_729994 Chr10 7390430 7390431 + ORSiTERTOOT00296 5553 0.0003 (1/2985) 0 * Os_TE_729993 Os_TE_729993 Chr10 7390426 7390425 - SC-3_LTR 5748 0.0003 (1/2986) 0 * Os_TE_729994 Os_TE_729927 Chr10 7369491 7363860 - RIRE2_LTR 11306 0.0989 (292/2951) 1 Intact Os_TE_729923 Os_TE_729923 Chr10 7363581 7369491 + RIREX_LTR 8828 0.0983 (290/2950) 1 Intact Os_TE_729927 Os_TE_729921 Chr10 7362967 7362968 + ORSiCMCM00100019 2717 0.0003 (1/2949) 0 * Os_TE_729920 Os_TE_729920 Chr10 7362963 7362962 - TRUNCATOR2_LTR 2904 0.0003 (1/2949) 0 * Os_TE_729921 Os_TE_729901 Chr10 7356833 7356832 + RIRE2_LTR 11306 0.0116 (34/2940) 0 * * Os_TE_729852 Chr10 7347340 7347341 + TRUNCATOR2_LTR 2904 0.0017 (5/2976) 0 * Os_TE_729851 Os_TE_729851 Chr10 7347336 7347335 - TRUNCATOR2_LTR 2904 0.0017 (5/2977) 0 * Os_TE_729852 Os_TE_729823 Chr10 7344029 7344030 - RETRO2_LTR 12874 0.7860 (2310/2939) 0 * * Os_TE_729820 Chr10 7343072 7343073 - COPIA2-LTR_OS 6433 0.0003 (1/2967) 0 * Os_TE_729819 Os_TE_729819 Chr10 7343068 7343067 + COPIA2-LTR_OS 6433 0.0003 (1/2958) 0 * Os_TE_729820 Os_TE_729812 Chr10 7340949 7340950 + SPMLIKE 10989 0.0007 (2/2978) 0 * Os_TE_729811 Os_TE_729811 Chr10 7340947 7340946 - SPMLIKE 10989 0.0007 (2/2991) 0 * Os_TE_729812 Os_TE_729805 Chr10 7334444 7334443 + TWIFB1 3737 0.0119 (35/2940) 0 * * Os_TE_729762 Chr10 7316908 7328857 + TRUNCATOR 2918 0.1909 (572/2997) 1 Intact * Os_TE_729738 Chr10 7310220 7310219 + RIRE3_LTR 12054 0.0007 (2/2981) 0 * * Os_TE_729733 Chr10 7305731 7305431 - COPI2_LTR 4733 0.1273 (292/2293) 1 Solo_LTR Os_TE_729732 Os_TE_729732 Chr10 7305431 7305734 + COPI2_LTR 4733 0.1290 (296/2294) 1 Solo_LTR Os_TE_729733 Os_TE_729720 Chr10 7301796 7301797 + ORSiTERT00200145 12238 0.0009 (2/2293) 0 * Os_TE_729719 Os_TE_729719 Chr10 7301792 7301791 - RETROSAT5_LTR 13878 0.0009 (2/2295) 0 * Os_TE_729720 Os_TE_729623 Chr10 7269236 7269237 - RIRE2_LTR 11306 0.0007 (2/2987) 0 * * Os_TE_729616 Chr10 7267783 7267782 + SPMLIKE 10989 0.0007 (2/2944) 0 * * Os_TE_729560 Chr10 7243320 7243319 + TRUNCATOR 2918 0.0007 (2/2986) 0 * * Os_TE_729416 Chr10 7113822 7113487 + ORSgTEMT00100531 325 0.0997 (286/2868) 1 Intact Os_TE_729414 Os_TE_729414 Chr10 7113487 7113820 + NDNA1TNA_OS 334 0.0876 (252/2876) 1 Intact Os_TE_729416 Os_TE_729409 Chr10 7109840 7109841 - ORSgTETN00200001 10994 0.0013 (4/2995) 0 * * Os_TE_729320 Chr10 7027342 7027343 + SC-8_LTR 4951 0.0034 (10/2948) 0 * Os_TE_729319 Os_TE_729319 Chr10 7027338 7027337 - SC-8_LTR 4951 0.0034 (10/2949) 0 * Os_TE_729320 Os_TE_729317 Chr10 7025589 7025590 - ORSgTEMT00501255 146 0.0017 (5/2949) 0 * * Os_TE_729295 Chr10 7018519 7018520 + RIREX_LTR 8828 0.0003 (1/2933) 0 * Os_TE_729294 Os_TE_729294 Chr10 7018515 7018514 - RIREX_LTR 8828 0.0003 (1/2940) 0 * Os_TE_729295 Os_TE_729265 Chr10 7014620 7014619 - ENSPM4_OS 11610 0.0904 (266/2941) 0 * * Os_TE_729216 Chr10 6993620 6993621 + TRUNCATOR2_LTR 2904 0.0024 (7/2912) 0 * * Os_TE_729212 Chr10 6992702 6992703 + RIRE2_LTR 11306 0.2713 (792/2919) 0 * * Os_TE_729177 Chr10 6974464 6959417 - TRUNCATOR 2918 0.1798 (528/2937) 1 Intact * Os_TE_729124 Chr10 6952540 6952539 - RETROSAT4_LTR 13504 0.0017 (5/2986) 0 * * Os_TE_729111 Chr10 6947929 6947930 - OSTE14 885 0.0017 (5/2944) 0 * * Os_TE_729107 Chr10 6944582 6944581 + ENSPM7_OS 10954 0.0017 (5/2990) 0 * * Os_TE_729100 Chr10 6941904 6941905 + RETROSAT2LTRA 3112 0.0071 (21/2969) 0 * Os_TE_729099 Os_TE_729099 Chr10 6941900 6941899 - RETROSAT2LTRA 3112 0.0071 (21/2963) 0 * Os_TE_729100 Os_TE_729047 Chr10 6911477 6911478 - TRUNCATOR2_LTR 2904 0.0013 (4/2993) 0 * * Os_TE_729044 Chr10 6909433 6909434 + ORSiCMCM00100019 2717 0.2550 (757/2969) 0 * Os_TE_729043 Os_TE_729043 Chr10 6909429 6909428 - TRUNCATOR2_LTR 2904 0.2610 (781/2992) 0 * Os_TE_729044 Os_TE_729033 Chr10 6906902 6906903 + RIREX_LTR 8828 0.0003 (1/2987) 0 * * Os_TE_729030 Chr10 6906528 6906529 - STOWAWAY18_OS 216 0.0017 (5/2983) 0 * Os_TE_729029 Os_TE_729029 Chr10 6906527 6906526 + STOWAWAY18_OS 216 0.0017 (5/2982) 0 * Os_TE_729030 Os_TE_729028 Chr10 6906299 6906300 + SPMLIKE 10989 0.0003 (1/2979) 0 * * Os_TE_729025 Chr10 6905219 6905220 + RIREX_LTR 8828 0.0960 (286/2979) 0 * Os_TE_729024 Os_TE_729024 Chr10 6905215 6905214 - RIREX_LTR 8828 0.0957 (285/2979) 0 * Os_TE_729025 Os_TE_729012 Chr10 6900556 6900557 - RIRE3A_LTR 10580 0.0010 (3/2909) 0 * * Os_TE_728993 Chr10 6895916 6895917 - RETRO2_LTR 12874 0.0797 (237/2973) 0 * Os_TE_728992 Os_TE_728992 Chr10 6895912 6895911 + RETRO2_LTR 12874 0.0795 (238/2994) 0 * Os_TE_728993 Os_TE_728938 Chr10 6881171 6881172 - ORSiTERT00200154 9386 0.3039 (798/2626) 0 * * Os_TE_728936 Chr10 6881161 6881891 - ORSiTERTOOT00048 731 0.7152 (1851/2588) 1 Intact * Os_TE_728912 Chr10 6872202 6872201 - ORSgTEMT00900760 239 0.0003 (1/2938) 0 * * Os_TE_728907 Chr10 6868404 6868405 - SZ-62LTR 3649 0.0125 (35/2792) 0 * Os_TE_728906 Os_TE_728906 Chr10 6868400 6868399 + SZ-62LTR 3649 0.0111 (31/2801) 0 * Os_TE_728907 Os_TE_728851 Chr10 6841744 6841745 + ORSgTETNOOT00908 242 0.0111 (33/2980) 0 * * Os_TE_728840 Chr10 6836388 6813194 - RIRE2_LTR 11306 0.0965 (288/2985) 1 Intact Os_TE_728821 Os_TE_728821 Chr10 6813194 6836388 - ORSgTERT00201216 11284 0.0974 (291/2987) 1 Intact Os_TE_728840 Os_TE_728820 Chr10 6812928 6801608 - ORSgTERT00201216 11284 0.0953 (284/2981) 1 Intact Os_TE_728812 Os_TE_728812 Chr10 6801608 6812928 - RIRE2_LTR 11306 0.0960 (286/2980) 1 Intact Os_TE_728820 Os_TE_728806 Chr10 6795714 6795940 - ORSgTEMT01602310 229 0.7248 (1064/1468) 1 Intact * Os_TE_728797 Chr10 6794358 6794357 - RIRE2_LTR 11306 0.4587 (522/1138) 0 * * Os_TE_728793 Chr10 6781830 6781831 - RIREX_LTR 8828 0.0016 (1/625) 0 * Os_TE_728792 Os_TE_728792 Chr10 6781826 6781825 + RIREX_LTR 8828 0.0016 (1/625) 0 * Os_TE_728793 Os_TE_728723 Chr10 6740715 6740716 + RIREX_LTR 8828 0.2558 (759/2967) 0 * * Os_TE_728715 Chr10 6736932 6736931 + TRUNCATOR 2918 0.0003 (1/2991) 0 * Os_TE_728714 Os_TE_728714 Chr10 6736931 6736932 - TRUNCATOR 2918 0.0003 (1/2979) 0 * Os_TE_728715 Os_TE_728713 Chr10 6736471 6736472 - CACTA-M 1129 0.0117 (35/2986) 0 * Os_TE_728712 Os_TE_728712 Chr10 6736469 6736468 + CACTA-H 1152 0.0117 (35/2988) 0 * Os_TE_728713 Os_TE_728702 Chr10 6731675 6732670 - SZ-5LTR 1223 0.4605 (1377/2990) 1 Intact * Os_TE_728701 Chr10 6731384 6731385 + TRUNCATOR2_LTR 2904 0.0856 (251/2933) 0 * Os_TE_728700 Os_TE_728700 Chr10 6731380 6731379 - TRUNCATOR2_LTR 2904 0.0881 (263/2985) 0 * Os_TE_728701 Os_TE_728699 Chr10 6731373 6731374 - ORSgTETN00200001 10994 0.0155 (46/2976) 0 * Os_TE_728698 Os_TE_728698 Chr10 6731371 6731370 + SPMLIKE 10989 0.0168 (46/2745) 0 * Os_TE_728699 Os_TE_728694 Chr10 6730916 6730915 + RIRE3_LTR 12054 0.0007 (2/2951) 0 * * Os_TE_728674 Chr10 6722884 6722885 - RIRE2_LTR 11306 0.0888 (259/2916) 0 * Os_TE_728673 Os_TE_728673 Chr10 6722880 6722879 - ORSgTERT00201216 11284 0.0833 (238/2857) 0 * Os_TE_728674 Os_TE_728652 Chr10 6717078 6717079 - RETROSAT4_LTR 13504 0.4785 (1424/2976) 0 * Os_TE_728651 Os_TE_728651 Chr10 6717074 6717073 + RETROSAT4_LTR 13504 0.4692 (1384/2950) 0 * Os_TE_728652 Os_TE_728640 Chr10 6713664 6713663 + SPMLIKE 10989 0.2344 (667/2845) 0 * * Os_TE_728625 Chr10 6708733 6708732 - TYPEM 227 0.0014 (4/2881) 0 * * Os_TE_728613 Chr10 6699336 6699337 + MPING 430 0.0024 (7/2950) 0 * * Os_TE_728593 Chr10 6695529 6693449 + TNR3 1536 0.3835 (1093/2850) 1 Intact * Os_TE_728575 Chr10 6688134 6688133 - RIRE3A_LTR 10580 0.1973 (489/2478) 0 * * Os_TE_728574 Chr10 6688106 6688105 - TRUNCATOR 2918 0.3564 (696/1953) 0 * * Os_TE_728545 Chr10 6647399 6647400 + TRUNCATOR 2918 0.0016 (4/2536) 0 * Os_TE_728544 Os_TE_728544 Chr10 6647393 6647392 - ORSiTERT00200154 9386 0.0016 (4/2530) 0 * Os_TE_728545 Os_TE_728543 Chr10 6647212 6647213 - TRUNCATOR2_LTR 2904 0.0084 (25/2986) 0 * Os_TE_728542 Os_TE_728542 Chr10 6647208 6647207 + ORSiTERTOOT00028 8600 0.0077 (23/2985) 0 * Os_TE_728543 Os_TE_728540 Chr10 6647116 6647117 - TRUNCATOR 2918 0.0883 (263/2977) 0 * * Os_TE_728539 Chr10 6646930 6646929 - TRUNCATOR 2918 0.2440 (725/2971) 0 * Os_TE_728538 Os_TE_728538 Chr10 6646929 6646930 + TRUNCATOR 2918 0.2537 (760/2996) 0 * Os_TE_728539 Os_TE_728536 Chr10 6646466 6646467 + SC-4_LTR 5218 0.0003 (1/2999) 0 * * Os_TE_728534 Chr10 6646124 6646125 + RIRE3_LTR 12054 0.0013 (4/2996) 0 * Os_TE_728533 Os_TE_728533 Chr10 6646120 6646119 - RIRE3_LTR 12054 0.0013 (4/2997) 0 * Os_TE_728534 Os_TE_728527 Chr10 6643146 6643147 + SPMLIKE 10989 0.0007 (2/2963) 0 * * Os_TE_728526 Chr10 6641685 6641686 + F569 228 0.6583 (1965/2985) 0 * * Os_TE_728523 Chr10 6639321 6639322 + RETROSAT4_LTR 13504 0.0010 (3/2920) 0 * * Os_TE_728520 Chr10 6639207 6638990 - ORSgTEMT01600223 220 0.3386 (995/2939) 1 Intact Os_TE_728517 Os_TE_728517 Chr10 6638979 6639214 - ORSgTEMT01601208 238 0.3453 (1022/2960) 1 Intact Os_TE_728520 Os_TE_728443 Chr10 6595985 6595984 - ENSPM4_OS 11610 0.2346 (691/2945) 0 * * Os_TE_728433 Chr10 6591994 6595019 - RETROSAT3_LTR 11537 0.3990 (1077/2699) 1 Solo_LTR * Os_TE_728431 Chr10 6582066 6582065 + MERMITE18C 1473 0.6357 (1766/2778) 0 * * Os_TE_728387 Chr10 6566303 6566304 + SPMLIKE 10989 0.1688 (503/2979) 0 * Os_TE_728386 Os_TE_728386 Chr10 6566301 6566300 - ORSgTETN00200001 10994 0.1613 (478/2963) 0 * Os_TE_728387 Os_TE_728366 Chr10 6556964 6556965 + RIRE1_LTR 8322 0.0023 (7/2986) 0 * * Os_TE_728351 Chr10 6550295 6550296 - ORSgTEMT00101341 314 0.0023 (7/2990) 0 * * Os_TE_728350 Chr10 6549787 6549788 + ORSiTERTOOT00296 5553 0.0010 (3/2990) 0 * Os_TE_728349 Os_TE_728349 Chr10 6549783 6549782 - SC-3_LTR 5748 0.0010 (3/2993) 0 * Os_TE_728350 Os_TE_728347 Chr10 6548578 6548197 - AMYLTP 383 0.1275 (381/2988) 1 Intact Os_TE_728345 Os_TE_728345 Chr10 6548197 6548578 + AMYLTP 383 0.1256 (375/2985) 1 Intact Os_TE_728347 Os_TE_728341 Chr10 6547849 6547850 + CASGRANDA 465 0.0798 (238/2984) 0 * * Os_TE_728257 Chr10 6513008 6513009 - COPI2_LTR 4733 0.0003 (1/2976) 0 * * Os_TE_728255 Chr10 6511589 6511590 - TRUNCATOR2_LTR 2904 0.0003 (1/2980) 0 * Os_TE_728254 Os_TE_728254 Chr10 6511588 6511587 + RIREX_LTR 8828 0.0003 (1/2982) 0 * Os_TE_728255 Os_TE_728231 Chr10 6506130 6506131 - RIREX_LTR 8828 0.0003 (1/2955) 0 * Os_TE_728230 Os_TE_728230 Chr10 6506126 6506125 + RIREX_LTR 8828 0.0003 (1/2894) 0 * Os_TE_728231 Os_TE_728218 Chr10 6500999 6501000 - STOWAWAY1_OS 149 0.0020 (6/2977) 0 * * Os_TE_728216 Chr10 6498859 6498858 + ORSgTEMT00101341 314 0.0017 (5/2949) 0 * * Os_TE_728187 Chr10 6489469 6489468 + RIRE3A_LTR 10580 0.0007 (2/2974) 0 * Os_TE_728186 Os_TE_728186 Chr10 6489467 6489468 - RIRE3A_LTR 10580 0.0007 (2/2942) 0 * Os_TE_728187 Os_TE_728182 Chr10 6486592 6486593 - ORSgTETN00200001 10994 0.0007 (2/2992) 0 * Os_TE_728181 Os_TE_728181 Chr10 6486590 6486589 + SPMLIKE 10989 0.0007 (2/2991) 0 * Os_TE_728182 Os_TE_728177 Chr10 6485091 6485092 + SZ-58LTR 114 0.0017 (5/2975) 0 * * Os_TE_728058 Chr10 6422323 6422324 - RIRE3A_LTR 10580 0.0007 (2/2965) 0 * * Os_TE_728049 Chr10 6408557 6421746 - HELITRON4_OS 13190 0.1183 (354/2993) 1 Intact * Os_TE_728048 Chr10 6408275 6408276 - TYPEM 227 0.0003 (1/2989) 0 * Os_TE_728047 Os_TE_728047 Chr10 6408274 6408273 - ORSgTEMT02400179 221 0.0003 (1/2992) 0 * Os_TE_728048 Os_TE_728041 Chr10 6406031 6406032 + RIREX_LTR 8828 0.0010 (3/2969) 0 * Os_TE_728040 Os_TE_728040 Chr10 6406027 6406026 - RIREX_LTR 8828 0.0010 (3/2973) 0 * Os_TE_728041 Os_TE_727916 Chr10 6361516 6361515 - TRUNCATOR 2918 0.0848 (253/2985) 0 * Os_TE_727915 Os_TE_727915 Chr10 6361515 6361516 + TRUNCATOR 2918 0.0878 (263/2996) 0 * Os_TE_727916 Os_TE_727824 Chr10 6305117 6305118 + F569 228 0.0017 (5/2991) 0 * Os_TE_727823 Os_TE_727823 Chr10 6305115 6305114 - F569 228 0.0017 (5/2994) 0 * Os_TE_727824 Os_TE_727822 Chr10 6304490 6304489 - TAMI2 254 0.0017 (5/2990) 0 * * Os_TE_727817 Chr10 6300392 6300393 + SC-3_LTR 5748 0.0020 (6/2989) 0 * Os_TE_727816 Os_TE_727816 Chr10 6300388 6300387 - SC-3_LTR 5748 0.0020 (6/2991) 0 * Os_TE_727817 Os_TE_727815 Chr10 6300354 6300355 - NDNA1TNA_OS 334 0.0010 (3/2991) 0 * Os_TE_727814 Os_TE_727814 Chr10 6300352 6300351 + NDNA1TNA_OS 334 0.0010 (3/2994) 0 * Os_TE_727815 Os_TE_727811 Chr10 6297297 6297298 - SC-7_LTR 4431 0.0003 (1/2991) 0 * Os_TE_727810 Os_TE_727810 Chr10 6297293 6297292 + SC-7_LTR 4431 0.0003 (1/2991) 0 * Os_TE_727811 Os_TE_727803 Chr10 6291816 6291817 - MERMITE18D 1491 0.0020 (6/2941) 0 * * Os_TE_727793 Chr10 6287559 6284012 + TWIF 586 0.0694 (197/2839) 1 Intact Os_TE_727792 Os_TE_727792 Chr10 6284009 6287559 - ORSiTETNOOT00216 3569 0.0958 (275/2870) 1 Intact Os_TE_727793 Os_TE_727791 Chr10 6283980 6283981 - OSTE24 683 0.0745 (218/2927) 0 * Os_TE_727790 Os_TE_727790 Chr10 6283969 6283968 - OSTE24 683 0.0404 (107/2647) 0 * Os_TE_727791 Os_TE_727760 Chr10 6270576 6270575 - BAJIELTR 4500 0.8824 (2642/2994) 0 * * Os_TE_727749 Chr10 6264246 6264247 + SZ-19LTR 1513 0.0200 (60/2996) 0 * * Os_TE_727747 Chr10 6263596 6263595 + TRUNCATOR 2918 0.2718 (805/2962) 0 * Os_TE_727746 Os_TE_727746 Chr10 6263595 6263596 - TRUNCATOR 2918 0.2650 (785/2962) 0 * Os_TE_727747 Os_TE_727742 Chr10 6259957 6259956 + TRUNCATOR 2918 0.0935 (275/2942) 0 * * Os_TE_727729 Chr10 6254643 6254644 - TRUNCATOR2_LTR 2904 0.0003 (1/2992) 0 * Os_TE_727728 Os_TE_727728 Chr10 6254639 6254638 + ORSiCMCM00100019 2717 0.0003 (1/2991) 0 * Os_TE_727729 Os_TE_727715 Chr10 6250783 6250784 + ORSgTEMT01601591 242 0.0007 (2/2875) 0 * * Os_TE_727711 Chr10 6246367 6246368 - SC-3_LTR 5748 0.0007 (2/2976) 0 * Os_TE_727710 Os_TE_727710 Chr10 6246363 6246362 + ORSiTERTOOT00296 5553 0.0007 (2/2967) 0 * Os_TE_727711 Os_TE_727708 Chr10 6244421 6244422 - INDITTO 263 0.0141 (41/2910) 0 * Os_TE_727707 Os_TE_727707 Chr10 6244419 6244418 + INDITTO 263 0.0138 (41/2970) 0 * Os_TE_727708 Os_TE_727703 Chr10 6243788 6243789 + RIREX_LTR 8828 0.0007 (2/2973) 0 * Os_TE_727702 Os_TE_727702 Chr10 6243784 6243783 - RIREX_LTR 8828 0.0007 (2/2997) 0 * Os_TE_727703 Os_TE_727701 Chr10 6243737 6243738 + TWIFBIG 3567 0.0074 (22/2980) 0 * Os_TE_727700 Os_TE_727700 Chr10 6243730 6243729 - ORSiTETNOOT00200 3563 0.0061 (18/2975) 0 * Os_TE_727701 Os_TE_727691 Chr10 6235515 6235516 + TRUNCATOR 2918 0.0027 (8/2997) 0 * * Os_TE_727689 Chr10 6232374 6217487 - ORSgTETN00200001 10994 0.0811 (241/2970) 1 Intact Os_TE_727683 Os_TE_727683 Chr10 6217488 6232374 + SPMLIKE 10989 0.0890 (266/2989) 1 Intact Os_TE_727689 Os_TE_727680 Chr10 6214282 6214283 + ORSgTEMT00300069 394 0.0010 (3/2924) 0 * * Os_TE_727679 Chr10 6214180 6214181 - STOWAWAY51_OS 246 0.0003 (1/2876) 0 * * Os_TE_727678 Chr10 6214031 6214030 + TWIFB1 3737 0.0047 (2/425) -1 * * Os_TE_727677 Chr10 6211639 6211640 - TRUNCATOR2_LTR 2904 0.0003 (1/2971) 0 * * Os_TE_727669 Chr10 6208134 6208135 + TRUNCATOR2_LTR 2904 0.0007 (2/2968) 0 * * Os_TE_727661 Chr10 6207438 6207439 - OSTE24 683 0.0015 (2/1362) 0 * * Os_TE_727660 Chr10 6207351 6207352 - MUDRN1_OS 764 0.0124 (17/1367) 0 * * Os_TE_727612 Chr10 6188827 6188828 + SPMLIKE 10989 0.3391 (988/2914) 0 * Os_TE_727611 Os_TE_727611 Chr10 6188825 6188824 - ORSgTETN00200001 10994 0.2903 (800/2756) 0 * Os_TE_727612 Os_TE_727600 Chr10 6178033 6186578 + RIREX_LTR 8828 0.0896 (268/2991) 1 Intact * Os_TE_727599 Chr10 6177855 6177856 + RETROSAT2LTR 12796 0.0003 (1/2996) 0 * Os_TE_727598 Os_TE_727598 Chr10 6177853 6177852 - RETROSAT2LTR 12796 0.0003 (1/2998) 0 * Os_TE_727599 Os_TE_727566 Chr10 6165590 6165591 + ORSiCMCM00100019 2717 0.2436 (725/2976) 0 * * Os_TE_727559 Chr10 6163592 6163593 + ORSiTERTOOT00226 792 0.0007 (2/2956) 0 * Os_TE_727558 Os_TE_727558 Chr10 6163588 6163587 - SZ-22_LTR 4403 0.0007 (2/2951) 0 * Os_TE_727559 Os_TE_727556 Chr10 6162362 6162361 - GLUTEL1LIKE 273 0.0007 (2/2973) 0 * * Os_TE_727543 Chr10 6157643 6157642 - TRUNCATOR 2918 0.2304 (683/2965) 0 * * Os_TE_727519 Chr10 6149926 6149927 - SZ-22_LTR 4403 0.0003 (1/2988) 0 * * Os_TE_727483 Chr10 6134321 6134322 + COPIA2-LTR_OS 6433 0.0003 (1/2928) 0 * Os_TE_727482 Os_TE_727482 Chr10 6134317 6134316 - COPIA2-LTR_OS 6433 0.0003 (1/2934) 0 * Os_TE_727483 Os_TE_727444 Chr10 6115147 6115148 + ORSgTEMT01701663 106 0.0223 (66/2962) 0 * * Os_TE_727441 Chr10 6113600 6113601 + SC-3_LTR 5748 0.0067 (20/2992) 0 * Os_TE_727440 Os_TE_727440 Chr10 6113596 6113595 - SC-3_LTR 5748 0.0070 (21/2991) 0 * Os_TE_727441 Os_TE_727438 Chr10 6111509 6111508 + HARB-1_OS 5166 0.0003 (1/2990) 0 * * Os_TE_727435 Chr10 6110216 6110217 + ORSgTEMT00300069 394 0.0067 (20/2994) 0 * Os_TE_727434 Os_TE_727434 Chr10 6110211 6110210 + ORSgTEMT00300122 416 0.0071 (21/2972) 0 * Os_TE_727435 Os_TE_727421 Chr10 6107159 6107160 - SC-3_LTR 5748 0.0003 (1/2931) 0 * Os_TE_727420 Os_TE_727420 Chr10 6107155 6107154 + ORSiTERTOOT00296 5553 0.0003 (1/2899) 0 * Os_TE_727421 Os_TE_727419 Chr10 6106116 6106117 - SC-3_LTR 5748 0.0003 (1/2997) 0 * Os_TE_727418 Os_TE_727418 Chr10 6106112 6106111 + ORSiTERTOOT00296 5553 0.0003 (1/2999) 0 * Os_TE_727419 Os_TE_727413 Chr10 6103102 6103103 + STOWAWAY9_OS 235 0.0005 (1/1852) 0 * * Os_TE_727412 Chr10 6102906 6102907 - YOUREN 286 0.0018 (5/2800) 0 * Os_TE_727411 Os_TE_727411 Chr10 6102904 6102903 + YOUREN 286 0.0015 (4/2732) 0 * Os_TE_727412 Os_TE_727410 Chr10 6102709 6102708 + ORSgTEMT01701663 106 0.0003 (1/2942) 0 * * Os_TE_727409 Chr10 6101692 6101693 + RIREX_LTR 8828 0.0010 (3/2981) 0 * Os_TE_727408 Os_TE_727408 Chr10 6101688 6101687 - RIREX_LTR 8828 0.0013 (4/2984) 0 * Os_TE_727409 Os_TE_727397 Chr10 6099978 6099979 + ORSiTERTOOT00034 791 0.0014 (4/2960) 0 * * Os_TE_727395 Chr10 6099935 6099936 - RETRO1_LTR 8314 0.0139 (41/2945) 0 * Os_TE_727394 Os_TE_727394 Chr10 6099931 6099930 + RETRO2A_LTR 12895 0.0133 (39/2941) 0 * Os_TE_727395 Os_TE_727389 Chr10 6097665 6097666 - F804 170 0.0003 (1/2978) 0 * * Os_TE_727384 Chr10 6096747 6096748 + RIREX_LTR 8828 0.4553 (1340/2943) 0 * Os_TE_727383 Os_TE_727383 Chr10 6096743 6096742 - RIREX_LTR 8828 0.4424 (1291/2918) 0 * Os_TE_727384 Os_TE_727382 Chr10 6096681 6096682 + COPIA2-LTR_OS 6433 0.0010 (3/2895) 0 * Os_TE_727381 Os_TE_727381 Chr10 6096677 6096676 - COPIA2-LTR_OS 6433 0.0014 (4/2918) 0 * Os_TE_727382 Os_TE_727347 Chr10 6091844 6091843 - GYPSO_LTR 9828 0.0003 (1/2997) 0 * * Os_TE_727317 Chr10 6075160 6075161 - SZ-59_LTR 5600 0.0030 (9/2989) 0 * Os_TE_727316 Os_TE_727316 Chr10 6075156 6075155 + SZ-59_LTR 5600 0.0027 (8/2995) 0 * Os_TE_727317 Os_TE_727297 Chr10 6069695 6069694 - SC-3_LTR 5748 0.0013 (4/2991) 0 * * Os_TE_727296 Chr10 6069414 6069413 + ORSgTEMT01602181 239 0.2128 (634/2979) 0 * * Os_TE_727293 Chr10 6068820 6065218 - ORSiTETNOOT00216 3569 0.0838 (246/2935) 1 Intact * Os_TE_727290 Chr10 6064862 6064863 - RIRE3_LTR 12054 0.2289 (654/2857) 0 * * Os_TE_727259 Chr10 6050863 6034444 - TRUNCATOR2_LTR 2904 0.0906 (270/2980) 1 Intact Os_TE_727253 Os_TE_727253 Chr10 6034444 6050863 + TRUNCATOR2_LTR 2904 0.2617 (279/1066) 1 Intact Os_TE_727259 Os_TE_727250 Chr10 6033580 6033581 + GYPSY-A_LTR 8951 0.0007 (2/2994) 0 * Os_TE_727249 Os_TE_727249 Chr10 6033576 6033575 - GYPSY-A_LTR 8951 0.0007 (2/2994) 0 * Os_TE_727250 Os_TE_727237 Chr10 6029399 6029400 + COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_727236 Os_TE_727236 Chr10 6029395 6029394 - COPI2_LTR 4733 0.0007 (2/2998) 0 * Os_TE_727237 Os_TE_727232 Chr10 6026904 6026905 - TRUNCATOR 2918 0.0070 (21/2994) 0 * * Os_TE_727231 Chr10 6026379 6026380 - ORSiTERT00200154 9386 0.5892 (624/1059) 0 * * Os_TE_727218 Chr10 6020802 6020801 - ORSgTEMT00100854 331 0.0003 (1/2972) 0 * * Os_TE_727204 Chr10 6014660 6014659 - OSTE33 1012 0.0011 (3/2785) 0 * * Os_TE_727191 Chr10 6011810 6011811 + SZ-40LTR 2465 0.1988 (580/2918) 0 * * Os_TE_727188 Chr10 6011063 6011064 - RETROSAT4_LTR 13504 0.0007 (2/2926) 0 * Os_TE_727187 Os_TE_727187 Chr10 6011059 6011058 + RETROSAT4_LTR 13504 0.0007 (2/2985) 0 * Os_TE_727188 Os_TE_727186 Chr10 6010862 6010863 + BAJIELTR 4500 0.0438 (130/2967) 0 * * Os_TE_727185 Chr10 6010013 6010012 + STOWAWAY51_OS 246 0.6465 (1818/2812) 0 * Os_TE_727184 Os_TE_727184 Chr10 6010004 6010005 + STOWAWAY51_OS 246 0.6686 (1985/2969) 0 * Os_TE_727185 Os_TE_727179 Chr10 6008843 6008844 + COPIA1-LTR_OS 9292 0.0003 (1/2858) 0 * * Os_TE_727175 Chr10 6008557 6008558 - SZ-5LTR 1223 0.7267 (2119/2916) 0 * * Os_TE_727167 Chr10 6006959 6006714 + STOWAWAY51_OS 246 0.3022 (899/2975) 1 Intact Os_TE_727165 Os_TE_727165 Chr10 6006714 6006956 + ORSgTEMT01601591 242 0.2988 (883/2955) 1 Intact Os_TE_727167 Os_TE_727158 Chr10 6001778 5990484 - RIRE2_LTR 11306 0.5943 (167/281) -1 Intact Os_TE_727152 Os_TE_727152 Chr10 5990484 6001778 + RIRE2_LTR 11306 0.5986 (167/279) -1 Intact Os_TE_727158 Os_TE_727151 Chr10 5990165 5978830 - RIRE2_LTR 11306 0.5971 (166/278) -1 Intact Os_TE_727144 Os_TE_727144 Chr10 5978830 5990165 - ORSgTERT00201216 11284 0.5993 (166/277) -1 Intact Os_TE_727151 Os_TE_727142 Chr10 5969775 5969776 + COPI2_LTR 4733 0.0014 (4/2870) 0 * * Os_TE_727140 Chr10 5969261 5969260 - SZ-22_LTR 4403 0.0007 (2/2988) 0 * * Os_TE_727131 Chr10 5968071 5968072 - TELIA 141 0.0551 (164/2974) 0 * Os_TE_727130 Os_TE_727130 Chr10 5968064 5968063 + TELIA 141 0.0542 (161/2972) 0 * Os_TE_727131 Os_TE_727105 Chr10 5933766 5933767 - EnSpm-N1_OS 4256 0.0017 (5/2922) 0 * * Os_TE_727104 Chr10 5933678 5933679 - SZ-22_LTR 4403 0.0003 (1/2946) 0 * Os_TE_727103 Os_TE_727103 Chr10 5933674 5933673 + ORSiTERTOOT00226 792 0.0003 (1/2948) 0 * Os_TE_727104 Os_TE_727096 Chr10 5933134 5933135 - ORSgTETN00200001 10994 0.0123 (36/2934) 0 * Os_TE_727095 Os_TE_727095 Chr10 5933132 5933131 + SPMLIKE 10989 0.0129 (38/2941) 0 * Os_TE_727096 Os_TE_727085 Chr10 5927961 5927960 - TRUNCATOR 2918 0.8820 (2549/2890) 0 * * Os_TE_727067 Chr10 5925399 5925398 - COWARD 200 0.0017 (5/2952) 0 * * Os_TE_727064 Chr10 5924406 5924407 - RIREX_LTR 8828 0.2231 (656/2941) 0 * * Os_TE_727062 Chr10 5924114 5924115 - ORSgTETN00200001 10994 0.0017 (5/2932) 0 * Os_TE_727061 Os_TE_727061 Chr10 5924112 5924111 + SPMLIKE 10989 0.0017 (5/2936) 0 * Os_TE_727062 Os_TE_727041 Chr10 5914851 5914852 + ENSPM4_OS 11610 0.0014 (4/2882) 0 * * Os_TE_727040 Chr10 5914767 5914766 - COPIA2-LTR_OS 6433 0.0003 (1/2878) 0 * * Os_TE_727039 Chr10 5914254 5914255 - ORSgTETNOOT00593 233 0.0121 (34/2806) 0 * Os_TE_727038 Os_TE_727038 Chr10 5914249 5914248 + STOWAWAY17_OS 259 0.0121 (34/2804) 0 * Os_TE_727039 Os_TE_727028 Chr10 5911224 5911225 + RETRO2A_LTR 12895 0.0077 (23/2979) 0 * Os_TE_727027 Os_TE_727027 Chr10 5911220 5911219 - RETRO2_LTR 12874 0.0067 (20/2975) 0 * Os_TE_727028 Os_TE_727026 Chr10 5910832 5910831 + TNR2A 152 0.0017 (5/2990) 0 * * Os_TE_727025 Chr10 5910775 5910776 - TNR2A 152 0.0292 (87/2984) 0 * * Os_TE_727018 Chr10 5909150 5909149 - RIREX_LTR 8828 0.0003 (1/2902) 0 * * Os_TE_726978 Chr10 5875533 5875534 + SPMLIKE 10989 0.0159 (47/2960) 0 * Os_TE_726977 Os_TE_726977 Chr10 5875531 5875530 - ORSgTETN00200001 10994 0.0149 (44/2958) 0 * Os_TE_726978 Os_TE_726959 Chr10 5869428 5869427 - TRUNCATOR 2918 0.1304 (371/2846) 0 * Os_TE_726958 Os_TE_726958 Chr10 5869427 5869428 + TRUNCATOR 2918 0.1380 (394/2855) 0 * Os_TE_726959 Os_TE_726890 Chr10 5833514 5833515 + SZ-9LTR 965 0.0013 (4/2994) 0 * Os_TE_726889 Os_TE_726889 Chr10 5833510 5833509 - SZ-9LTR 965 0.0010 (3/2996) 0 * Os_TE_726890 Os_TE_726887 Chr10 5832573 5832574 + SEVERIN-2 1952 0.0091 (27/2983) 0 * * Os_TE_726886 Chr10 5832532 5832531 + SPMLIKE 10989 0.0013 (4/2982) 0 * * Os_TE_726877 Chr10 5827518 5827517 + ORSgTEMT00500794 146 0.6148 (1674/2723) 0 * * Os_TE_726876 Chr10 5827418 5827419 + COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * * Os_TE_726874 Chr10 5824915 5824914 + SEVERIN-2 1952 0.0014 (4/2885) 0 * * Os_TE_726870 Chr10 5823963 5823962 - TRUNCATOR 2918 0.2040 (575/2819) 0 * * Os_TE_726861 Chr10 5819520 5819521 - SZ-22_LTR 4403 0.0007 (2/2884) 0 * * Os_TE_726857 Chr10 5818031 5818032 - SZ-9LTR 965 0.0007 (2/2986) 0 * * Os_TE_726822 Chr10 5807900 5807901 + CACTA-B 1103 0.0024 (7/2978) 0 * * Os_TE_726811 Chr10 5806962 5806961 + RETROSAT2LTRA 3112 0.0067 (20/2983) 0 * * Os_TE_726798 Chr10 5798152 5798151 + DS-RICE4N 715 0.0014 (4/2923) 0 * * Os_TE_726761 Chr10 5783354 5783355 + SC-8_LTR 4951 0.0003 (1/2985) 0 * Os_TE_726760 Os_TE_726760 Chr10 5783350 5783349 - SC-8_LTR 4951 0.0003 (1/2984) 0 * Os_TE_726761 Os_TE_726756 Chr10 5780667 5780668 - ORSgTETNOOT00754 253 0.0014 (4/2865) 0 * * Os_TE_726755 Chr10 5780099 5780100 - RETRO1_LTR 8314 0.0882 (262/2972) 0 * Os_TE_726754 Os_TE_726754 Chr10 5780095 5780094 + RETRO2A_LTR 12895 0.0871 (254/2915) 0 * Os_TE_726755 Os_TE_726741 Chr10 5769846 5769845 + TRUNCATOR 2918 0.0073 (22/2997) 0 * * Os_TE_726736 Chr10 5765846 5765847 + COPIA2-LTR_OS 6433 0.0018 (5/2775) 0 * * Os_TE_726734 Chr10 5765822 5765821 + TRUNCATOR 2918 0.2028 (608/2998) 0 * Os_TE_726733 Os_TE_726733 Chr10 5765821 5765822 - TRUNCATOR 2918 0.2013 (602/2990) 0 * Os_TE_726734 Os_TE_726731 Chr10 5765233 5765234 + ENSPM4_OS 11610 0.0007 (2/2981) 0 * * Os_TE_726728 Chr10 5764861 5765119 + STOWAWAY34_OS 256 0.5723 (1563/2731) 1 Intact * Os_TE_726727 Chr10 5764550 5764549 - ORSgTEMT01600639 228 0.4770 (1388/2910) 0 * * Os_TE_726725 Chr10 5764509 5764510 + STOWAWAY1_OS 149 0.0007 (2/2966) 0 * * Os_TE_726716 Chr10 5762093 5762092 - ORSgTEMT02400179 221 0.0177 (53/2999) 0 * * Os_TE_726714 Chr10 5760848 5760849 + SZ-40LTR 2465 0.0174 (52/2993) 0 * Os_TE_726713 Os_TE_726713 Chr10 5760844 5760843 - GYPSY-A_LTR 8951 0.0184 (55/2993) 0 * Os_TE_726714 Os_TE_726643 Chr10 5730992 5730993 + TWIFB1 3737 0.0109 (28/2575) 0 * * Os_TE_726631 Chr10 5729140 5729141 + OSTE20 496 0.0159 (46/2885) 0 * Os_TE_726630 Os_TE_726630 Chr10 5729136 5729135 - OSTE20 496 0.0167 (48/2874) 0 * Os_TE_726631 Os_TE_726629 Chr10 5729077 5729076 + RIREX_LTR 8828 0.0007 (2/2807) 0 * * Os_TE_726618 Chr10 5722336 5722335 + ORSgTEMT01400031 216 0.0013 (4/2985) 0 * * Os_TE_726591 Chr10 5712122 5712121 + ORSgTERTOOT00009 12852 0.0045 (13/2902) 0 * * Os_TE_726564 Chr10 5700428 5700429 + OSTONOR1_LTR 6440 0.2419 (721/2980) 0 * * Os_TE_726551 Chr10 5696948 5696949 - SZ-22_LTR 4403 0.0003 (1/2986) 0 * Os_TE_726550 Os_TE_726550 Chr10 5696944 5696943 + ORSiTERTOOT00226 792 0.0003 (1/2988) 0 * Os_TE_726551 Os_TE_726549 Chr10 5696266 5696267 + OSTE33 1012 0.0044 (13/2981) 0 * Os_TE_726548 Os_TE_726548 Chr10 5696257 5696256 + OSTE33 1012 0.0044 (13/2981) 0 * Os_TE_726549 Os_TE_726546 Chr10 5693889 5693890 + SC-8_LTR 4951 0.0057 (17/2994) 0 * Os_TE_726545 Os_TE_726545 Chr10 5693885 5693884 - SC-8_LTR 4951 0.0053 (16/2991) 0 * Os_TE_726546 Os_TE_726538 Chr10 5687265 5687266 - SZ-40LTR 2465 0.0094 (28/2994) 0 * Os_TE_726537 Os_TE_726537 Chr10 5687261 5687260 + GYPSY-A_LTR 8951 0.0094 (28/2994) 0 * Os_TE_726538 Os_TE_726513 Chr10 5680662 5680661 - RIREX_LTR 8828 0.0007 (2/2957) 0 * * Os_TE_726510 Chr10 5678570 5678569 - ORSgTERT00201216 11284 0.0128 (38/2965) 0 * * Os_TE_726495 Chr10 5672651 5672652 - EnSpm-11_OS 13126 0.0961 (287/2986) 0 * Os_TE_726494 Os_TE_726494 Chr10 5672649 5672648 + EnSpm-11_OS 13126 0.0978 (292/2986) 0 * Os_TE_726495 Os_TE_726493 Chr10 5672350 5672349 + SEVERIN-2 1952 0.0986 (294/2982) 0 * * Os_TE_726486 Chr10 5669795 5669796 - ORSgTETN00200001 10994 0.0131 (39/2970) 0 * * Os_TE_726370 Chr10 5624768 5624769 - RETROSAT5_LTR 13878 0.0017 (5/2981) 0 * Os_TE_726369 Os_TE_726369 Chr10 5624764 5624763 + SZ-67LTR 1540 0.0017 (5/2966) 0 * Os_TE_726370 Os_TE_726342 Chr10 5611973 5611972 + RIREX_LTR 8828 0.0003 (1/2988) 0 * * Os_TE_726324 Chr10 5605016 5605017 - STOWAWAY1_OS 149 0.0003 (1/2988) 0 * * Os_TE_726320 Chr10 5602149 5602150 - SC-8_LTR 4951 0.0007 (2/2991) 0 * Os_TE_726319 Os_TE_726319 Chr10 5602145 5602144 + SC-8_LTR 4951 0.0007 (2/2993) 0 * Os_TE_726320 Os_TE_726303 Chr10 5594613 5594612 - RIREX_LTR 8828 0.0004 (1/2817) 0 * * Os_TE_726281 Chr10 5587903 5587904 - COPI2_LTR 4733 0.0007 (2/2989) 0 * Os_TE_726280 Os_TE_726280 Chr10 5587899 5587898 + COPI2_LTR 4733 0.0007 (2/2991) 0 * Os_TE_726281 Os_TE_726263 Chr10 5572549 5573061 + MuDR4_OS 7610 0.6491 (1939/2987) 1 Intact * Os_TE_726240 Chr10 5555218 5555219 + CLOUD 734 0.0458 (89/1942) 0 * * Os_TE_726226 Chr10 5550791 5550790 + ORSgTETNOOT02179 137 0.0005 (1/1887) 0 * * Os_TE_726206 Chr10 5545437 5545436 - STOWAWAY10_OS 259 0.0117 (23/1963) 0 * * Os_TE_726194 Chr10 5536608 5536609 - RIREX_LTR 8828 0.0025 (5/1981) 0 * Os_TE_726193 Os_TE_726193 Chr10 5536604 5536603 + RIREX_LTR 8828 0.0025 (5/1985) 0 * Os_TE_726194 Os_TE_726115 Chr10 5506654 5506653 + ORSgTEMT02400206 225 0.0010 (2/1992) 0 * * Os_TE_726113 Chr10 5506431 5506432 - SZ-9LTR 965 0.0023 (5/2203) 0 * * Os_TE_726106 Chr10 5505196 5505197 - TRUNCATOR2_LTR 2904 0.0013 (4/2998) 0 * * Os_TE_726072 Chr10 5498951 5496000 + TRUNCATOR 2918 0.6677 (1935/2898) 1 Intact * Os_TE_726063 Chr10 5495346 5495347 - OLO24 345 0.3560 (1059/2975) 0 * * Os_TE_726060 Chr10 5495242 5495243 - RIREX_LTR 8828 0.0003 (1/2991) 0 * Os_TE_726059 Os_TE_726059 Chr10 5495238 5495237 + RIREX_LTR 8828 0.0003 (1/2990) 0 * Os_TE_726060 Os_TE_726056 Chr10 5492557 5491655 + YIREN 905 0.6401 (1885/2945) 1 Intact * Os_TE_726053 Chr10 5491455 5491139 + ORSgTEMT00101674 340 0.6324 (1892/2992) 1 Intact Os_TE_726049 Os_TE_726049 Chr10 5491109 5491453 + ORSgTEMT00101341 314 0.6218 (1850/2975) 1 Intact Os_TE_726053 Os_TE_726041 Chr10 5490639 5490638 + ORSgTEMT00500476 150 0.0054 (15/2756) 0 * * Os_TE_726035 Chr10 5485887 5485886 - TRUNCATOR2_LTR 2904 0.0006 (1/1589) 0 * * Os_TE_726026 Chr10 5484179 5485669 - SZ-38 8643 0.6773 (1612/2380) 1 Intact * Os_TE_726024 Chr10 5483280 5476674 + RIREX_LTR 8828 0.1757 (494/2812) 1 Intact * Os_TE_726017 Chr10 5476306 5475079 + OSTE14 885 0.8344 (2353/2820) 1 Intact Os_TE_726016 Os_TE_726016 Chr10 5475076 5476304 - OSTE1 801 0.8278 (2408/2909) 1 Intact Os_TE_726017 Os_TE_726015 Chr10 5474493 5474494 - RETROSAT5_LTR 13878 0.0125 (28/2238) 0 * * Os_TE_726013 Chr10 5474397 5474398 + TRUNCATOR2_LTR 2904 0.2955 (776/2626) 0 * Os_TE_726012 Os_TE_726012 Chr10 5474393 5474392 - TRUNCATOR2_LTR 2904 0.3466 (827/2386) 0 * Os_TE_726013 Os_TE_726005 Chr10 5473827 5473828 - RIRE2_LTR 11306 0.2872 (835/2907) 0 * * Os_TE_726004 Chr10 5473119 5473120 + SPMLIKE 10989 0.3369 (821/2437) 0 * Os_TE_726003 Os_TE_726003 Chr10 5473117 5473116 - ORSgTETN00200001 10994 0.3336 (810/2428) 0 * Os_TE_726004 Os_TE_726000 Chr10 5472643 5471996 - ORSgTEMT00700002 381 0.5469 (1628/2977) 1 Intact Os_TE_725999 Os_TE_725999 Chr10 5471999 5472634 - MUDRN5_OS 374 0.6652 (1635/2458) 1 Intact Os_TE_726000 Os_TE_725996 Chr10 5471152 5471151 - RIREX_LTR 8828 0.2546 (641/2518) 0 * * Os_TE_725994 Chr10 5470413 5470618 + COWARD-3 221 0.1888 (549/2908) 1 Intact * Os_TE_725990 Chr10 5468395 5468396 + SPMLIKE 10989 0.0089 (25/2805) 0 * Os_TE_725989 Os_TE_725989 Chr10 5468393 5468392 - ORSgTETN00200001 10994 0.0073 (21/2864) 0 * Os_TE_725990 Os_TE_725988 Chr10 5468254 5468253 - ORSgTEMT01602413 239 0.1825 (537/2943) 0 * Os_TE_725987 Os_TE_725987 Chr10 5468251 5468252 + ORSgTEMT01601525 239 0.1691 (489/2892) 0 * Os_TE_725988 Os_TE_725986 Chr10 5468174 5467918 + ORSgTEMT04600010 284 0.8469 (2445/2887) 1 Intact * Os_TE_725982 Chr10 5464438 5464439 - NDNA1TNA_OS 334 0.1794 (533/2971) 0 * * Os_TE_725966 Chr10 5458292 5458293 - ORSgTERT00201216 11284 0.0013 (4/2979) 0 * Os_TE_725965 Os_TE_725965 Chr10 5458288 5458287 - RIRE2_LTR 11306 0.0013 (4/2989) 0 * Os_TE_725966 Os_TE_725947 Chr10 5452523 5452522 + TRUNCATOR 2918 0.2293 (677/2952) 0 * * Os_TE_725926 Chr10 5448802 5448803 - COPIA2-LTR_OS 6433 0.0084 (25/2991) 0 * Os_TE_725925 Os_TE_725925 Chr10 5448798 5448797 + COPIA2-LTR_OS 6433 0.0074 (22/2989) 0 * Os_TE_725926 Os_TE_725895 Chr10 5444030 5444031 + MERMITEH 1307 0.0003 (1/2983) 0 * * Os_TE_725877 Chr10 5435924 5435925 + RIREX_LTR 8828 0.0008 (2/2552) 0 * * Os_TE_725851 Chr10 5429279 5429280 - ORSiTERT00200154 9386 0.0989 (295/2983) 0 * * Os_TE_725848 Chr10 5428934 5428933 + ORSiTERTOOT00028 8600 0.0003 (1/2971) 0 * * Os_TE_725845 Chr10 5427206 5417524 - SZ-40LTR 2465 0.4719 (1410/2988) 1 Intact Os_TE_725842 Os_TE_725842 Chr10 5417524 5427206 + GYPSY-A_LTR 8951 0.4522 (1321/2921) 1 Intact Os_TE_725845 Os_TE_725840 Chr10 5416697 5416698 + COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_725839 Os_TE_725839 Chr10 5416693 5416692 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_725840 Os_TE_725832 Chr10 5412408 5392644 - TRUNCATOR 2918 0.1560 (452/2898) 1 Intact Os_TE_725741 Os_TE_725741 Chr10 5392644 5412403 + TRUNCATOR 2918 0.1669 (491/2942) 1 Intact Os_TE_725832 Os_TE_725734 Chr10 5392043 5392044 + TRUNCATOR 2918 0.0021 (6/2874) 0 * * Os_TE_725676 Chr10 5373937 5373938 + BAJIELTR 4500 0.0212 (62/2929) 0 * Os_TE_725675 Os_TE_725675 Chr10 5373933 5373932 - BAJIELTR 4500 0.0205 (60/2932) 0 * Os_TE_725676 Os_TE_725662 Chr10 5370900 5370901 - ORSgTETN00100078 209 0.0010 (3/2994) 0 * * Os_TE_725655 Chr10 5368997 5368998 + COPIA2-LTR_OS 6433 0.0010 (3/2998) 0 * Os_TE_725654 Os_TE_725654 Chr10 5368993 5368992 - COPIA2-LTR_OS 6433 0.0010 (3/2997) 0 * Os_TE_725655 Os_TE_725653 Chr10 5368843 5368844 + SPMLIKE 10989 0.0064 (19/2990) 0 * Os_TE_725652 Os_TE_725652 Chr10 5368841 5368840 - ORSgTETN00200001 10994 0.0064 (19/2962) 0 * Os_TE_725653 Os_TE_725646 Chr10 5358226 5358227 + COPIA2-LTR_OS 6433 0.0007 (2/2928) 0 * Os_TE_725645 Os_TE_725645 Chr10 5358222 5358221 - COPIA2-LTR_OS 6433 0.0007 (2/2929) 0 * Os_TE_725646 Os_TE_725638 Chr10 5357277 5357276 - UNIQUE 158 0.0223 (66/2958) 0 * * Os_TE_725635 Chr10 5357223 5356736 - OSTE20 496 0.7928 (1485/1873) 1 Intact * Os_TE_725632 Chr10 5356726 5356727 + ORSgTEMT00100272 356 0.0081 (23/2854) 0 * * Os_TE_725624 Chr10 5356163 5356164 - RIRE2_LTR 11306 0.0110 (32/2915) 0 * * Os_TE_725622 Chr10 5355966 5348139 - RIREX_LTR 8828 0.1464 (421/2876) 1 Intact Os_TE_725618 Os_TE_725618 Chr10 5348139 5355966 + RIREX_LTR 8828 0.1466 (416/2838) 1 Intact Os_TE_725622 Os_TE_725617 Chr10 5348117 5348118 - INDITTO 263 0.0007 (2/2759) 0 * Os_TE_725616 Os_TE_725616 Chr10 5348115 5348114 + INDITTO 263 0.0007 (1/1419) 0 * Os_TE_725617 Os_TE_725596 Chr10 5337431 5337432 + TEOS1 476 0.3273 (665/2032) 0 * Os_TE_725595 Os_TE_725595 Chr10 5337426 5337425 - TEOS1 476 0.4359 (1044/2395) 0 * Os_TE_725596 Os_TE_725594 Chr10 5337279 5337278 + HELITRON7_OS 10153 0.0196 (34/1732) 0 * Os_TE_725593 Os_TE_725593 Chr10 5337275 5337276 - HELITRON7_OS 10153 0.0174 (35/2008) 0 * Os_TE_725594 Os_TE_725590 Chr10 5336580 5336581 - SZ-9LTR 965 0.0082 (24/2940) 0 * Os_TE_725589 Os_TE_725589 Chr10 5336576 5336575 + SZ-9LTR 965 0.0082 (24/2942) 0 * Os_TE_725590 Os_TE_725581 Chr10 5332629 5332630 + RIRE3_LTR 12054 0.0170 (34/2003) 0 * Os_TE_725580 Os_TE_725580 Chr10 5332625 5332624 - RIRE3_LTR 12054 0.0343 (69/2011) 0 * Os_TE_725581 Os_TE_725556 Chr10 5327460 5327459 + STOWAWAY44_OS 240 0.0013 (4/2989) 0 * * Os_TE_725538 Chr10 5319064 5319063 - MERMITE18B 1306 0.0013 (4/2968) 0 * Os_TE_725537 Os_TE_725537 Chr10 5319036 5319037 - MERMITE18B 1306 0.0014 (4/2952) 0 * Os_TE_725538 Os_TE_725473 Chr10 5288189 5288190 + Mudr5_OS 5952 0.0017 (5/2924) 0 * * Os_TE_725468 Chr10 5286833 5286832 - RIREX_LTR 8828 0.0098 (28/2852) 0 * * Os_TE_725466 Chr10 5286187 5286188 + CACTA-B 1103 0.0188 (56/2971) 0 * Os_TE_725465 Os_TE_725465 Chr10 5286120 5286119 - ORSgTETN00200001 10994 0.0178 (53/2973) 0 * Os_TE_725466 Os_TE_725461 Chr10 5285239 5285238 - TYPEM 227 0.3148 (845/2684) 0 * * Os_TE_725446 Chr10 5282294 5283222 + ORSiTETNOOT00107 906 0.6625 (1963/2963) 1 Intact * Os_TE_725445 Chr10 5281407 5281408 + SZ-40LTR 2465 0.0003 (1/2982) 0 * * Os_TE_725435 Chr10 5277063 5277064 - NDNA1TNA_OS 334 0.0158 (47/2983) 0 * Os_TE_725434 Os_TE_725434 Chr10 5277061 5277060 + NDNA1TNA_OS 334 0.0162 (48/2971) 0 * Os_TE_725435 Os_TE_725418 Chr10 5272565 5272566 - ENSPM7_OS 10954 0.0019 (4/2109) 0 * * Os_TE_725413 Chr10 5272181 5272180 + OSTE21 1271 0.0169 (48/2835) 0 * Os_TE_725412 Os_TE_725412 Chr10 5272173 5272174 + OSTE21 1271 0.0194 (55/2834) 0 * Os_TE_725413 Os_TE_725337 Chr10 5257688 5257689 + RIREX_LTR 8828 0.1010 (291/2882) 0 * Os_TE_725336 Os_TE_725336 Chr10 5257684 5257683 - RIREX_LTR 8828 0.1011 (291/2879) 0 * Os_TE_725337 Os_TE_725335 Chr10 5256827 5256828 - ORSgTETN00200001 10994 0.0004 (1/2855) 0 * Os_TE_725334 Os_TE_725334 Chr10 5256825 5256824 + SPMLIKE 10989 0.0004 (1/2843) 0 * Os_TE_725335 Os_TE_725321 Chr10 5249093 5249092 + SZ-58LTR 114 0.0405 (121/2991) 0 * * Os_TE_725296 Chr10 5241652 5241653 + NDNA1TNA_OS 334 0.0104 (30/2877) 0 * * Os_TE_725283 Chr10 5239136 5239137 + SPMLIKE 10989 0.0102 (29/2847) 0 * Os_TE_725282 Os_TE_725282 Chr10 5239134 5239133 - ORSgTETN00200001 10994 0.0105 (30/2847) 0 * Os_TE_725283 Os_TE_725270 Chr10 5234521 5234522 - ORSiCMCM00100014 10855 0.2943 (845/2871) 0 * * Os_TE_725268 Chr10 5232413 5232414 - RETROSAT5_LTR 13878 0.2583 (746/2888) 0 * Os_TE_725267 Os_TE_725267 Chr10 5232409 5232408 + SZ-67LTR 1540 0.2559 (739/2888) 0 * Os_TE_725268 Os_TE_725263 Chr10 5229622 5229623 + SZ-14LTR 1193 0.2877 (830/2885) 0 * * Os_TE_725261 Chr10 5229426 5229425 - ORSgTEMT02400246 177 0.2583 (744/2880) 0 * Os_TE_725260 Os_TE_725260 Chr10 5229422 5229423 - ORSgTEMT02400092 225 0.2545 (733/2880) 0 * Os_TE_725261 Os_TE_725259 Chr10 5229130 5228982 - ORSgTEMT01701348 105 0.7347 (2099/2857) 1 Intact Os_TE_725257 Os_TE_725257 Chr10 5228975 5229128 + ORSgTEMT01700791 134 0.7348 (2103/2862) 1 Intact Os_TE_725259 Os_TE_725248 Chr10 5226265 5226264 + SPMLIKE 10989 0.0061 (18/2950) 0 * * Os_TE_725247 Chr10 5225275 5225276 - COPIA2-LTR_OS 6433 0.0003 (1/2942) 0 * * Os_TE_725246 Chr10 5225207 5225208 - ORSgTETN00200001 10994 0.0095 (27/2842) 0 * * Os_TE_725244 Chr10 5224468 5224469 + RIREX_LTR 8828 0.0017 (5/2860) 0 * Os_TE_725243 Os_TE_725243 Chr10 5224464 5224463 - RIREX_LTR 8828 0.0017 (5/2877) 0 * Os_TE_725244 Os_TE_725228 Chr10 5221644 5221643 + RETROSAT2LTR 12796 0.0003 (1/2879) 0 * * Os_TE_725211 Chr10 5217389 5217388 + ORSiTERTOOT00404 4839 0.0003 (1/2921) 0 * * Os_TE_725168 Chr10 5203579 5203341 + ORSgTEMT01600691 229 0.5809 (1655/2849) 1 Intact * Os_TE_725154 Chr10 5200434 5200759 - ORSgTEMT00101341 314 0.3815 (905/2372) 1 Intact * Os_TE_725140 Chr10 5189914 5189913 + ORSiTERTOOT00028 8600 0.0003 (1/2861) 0 * * Os_TE_725137 Chr10 5188787 5188788 - RIRE3A_LTR 10580 0.0010 (3/2872) 0 * Os_TE_725136 Os_TE_725136 Chr10 5188783 5188782 + ORSiTERTOOT00027 10853 0.0010 (3/2876) 0 * Os_TE_725137 Os_TE_725078 Chr10 5167650 5167651 - ORSgTERT00201216 11284 0.0216 (31/1438) 0 * Os_TE_725077 Os_TE_725077 Chr10 5167646 5167645 - RIRE2_LTR 11306 0.0189 (25/1320) 0 * Os_TE_725078 Os_TE_725076 Chr10 5167459 5167460 + SEVERIN-2 1952 0.0018 (3/1664) 0 * * Os_TE_725071 Chr10 5163031 5163030 + TRUNCATOR 2918 0.0035 (2/566) 0 * * Os_TE_725070 Chr10 5160387 5160388 - OSMU5 4881 0.0559 (27/483) 0 * Os_TE_725069 Os_TE_725069 Chr10 5160377 5160376 - OSMU5 4881 0.0593 (29/489) 0 * Os_TE_725070 Os_TE_725065 Chr10 5157842 5157841 + ENSPM4_OS 11610 0.0040 (9/2254) 0 * * Os_TE_724878 Chr10 5126695 5126696 + BAJIELTR 4500 0.0017 (5/2927) 0 * * Os_TE_724830 Chr10 5113108 5113109 - RIRE3_LTR 12054 0.0526 (34/647) 0 * * Os_TE_724643 Chr10 5045721 5054043 + COPIA1-LTR_OS 9292 0.1841 (536/2912) 1 Intact * Os_TE_724483 Chr10 4996853 4996852 + STOWAWAY51_OS 246 0.0055 (3/545) 0 * Os_TE_724482 Os_TE_724482 Chr10 4996847 4996848 + ORSgTEMT01601591 242 0.0073 (4/546) 0 * Os_TE_724483 Os_TE_724478 Chr10 4994718 4994717 - ORSgTETNOOT00754 253 0.0007 (2/2921) 0 * * Os_TE_724472 Chr10 4989499 4989498 - SPMLIKE 10989 0.0052 (15/2875) 0 * * Os_TE_724420 Chr10 4972421 4975237 - ORSiTERTOOT00274 4749 0.1815 (541/2981) 1 Intact * Os_TE_724417 Chr10 4971223 4971224 + ORSiCMCM00100014 10855 0.0188 (56/2972) 0 * * Os_TE_724416 Chr10 4970966 4970965 - RETROSAT2LTR 12796 0.8079 (2418/2993) 0 * * Os_TE_724399 Chr10 4962225 4962368 - ORSgTEMT00500026 147 0.3446 (549/1593) 1 Intact * Os_TE_724389 Chr10 4955373 4955372 - ORSgTEMT01400011 212 0.7776 (2293/2949) 0 * Os_TE_724388 Os_TE_724388 Chr10 4955370 4955371 + STOWAWAY9_OS 235 0.7735 (2264/2927) 0 * Os_TE_724389 Os_TE_724362 Chr10 4941850 4941849 - ORSgTETN00200001 10994 0.0209 (15/717) 0 * * Os_TE_724341 Chr10 4935797 4933108 + TRUNCATOR 2918 0.1773 (508/2865) 1 Intact * Os_TE_724305 Chr10 4928984 4928985 + RIREX_LTR 8828 0.0003 (1/2986) 0 * Os_TE_724304 Os_TE_724304 Chr10 4928980 4928979 - RIREX_LTR 8828 0.0003 (1/2986) 0 * Os_TE_724305 Os_TE_724302 Chr10 4928376 4928377 - SZ-5LTR 1223 0.0003 (1/2972) 0 * Os_TE_724301 Os_TE_724301 Chr10 4928372 4928371 + COPIA1-LTR_OS 9292 0.0003 (1/2970) 0 * Os_TE_724302 Os_TE_724291 Chr10 4926006 4926007 - RETRO2_LTR 12874 0.0206 (56/2718) 0 * Os_TE_724290 Os_TE_724290 Chr10 4926002 4926001 + RETRO2_LTR 12874 0.0204 (57/2797) 0 * Os_TE_724291 Os_TE_724278 Chr10 4922715 4922714 + NDNA1TNA_OS 334 0.7594 (2121/2793) 0 * * Os_TE_724273 Chr10 4921693 4921692 + ORSiTERTOOT00348 13055 0.0013 (4/2966) 0 * * Os_TE_724269 Chr10 4921010 4921009 + ORSgTEMT01601122 212 0.0004 (1/2851) 0 * * Os_TE_724267 Chr10 4920255 4920256 - ORSgTETN00200001 10994 0.0004 (1/2263) 0 * Os_TE_724266 Os_TE_724266 Chr10 4920253 4920252 + SPMLIKE 10989 0.0004 (1/2331) 0 * Os_TE_724267 Os_TE_724250 Chr10 4915600 4915601 + TRUNCATOR2_LTR 2904 0.0014 (4/2889) 0 * Os_TE_724249 Os_TE_724249 Chr10 4915596 4915595 - TRUNCATOR2_LTR 2904 0.0014 (4/2888) 0 * Os_TE_724250 Os_TE_724248 Chr10 4915594 4915595 - STOWAWAY12_OS 312 0.0003 (1/2888) 0 * * Os_TE_724247 Chr10 4915473 4915474 - RIREX_LTR 8828 0.0064 (19/2950) 0 * Os_TE_724246 Os_TE_724246 Chr10 4915469 4915468 + RIREX_LTR 8828 0.0064 (19/2963) 0 * Os_TE_724247 Os_TE_724245 Chr10 4915303 4915302 - TRUNCATOR 2918 0.0235 (70/2985) 0 * Os_TE_724244 Os_TE_724244 Chr10 4915302 4915303 + TRUNCATOR 2918 0.0248 (74/2987) 0 * Os_TE_724245 Os_TE_724230 Chr10 4910730 4901179 - ORSiTERT00200154 9386 0.2156 (495/2296) 1 Intact * Os_TE_724135 Chr10 4876801 4876802 + ORSiTERTOOT00027 10853 0.0013 (4/2985) 0 * * Os_TE_724110 Chr10 4866506 4866173 + NDNA1TNA_OS 334 0.1673 (493/2947) 1 Intact Os_TE_724109 Os_TE_724109 Chr10 4866173 4866506 - NDNA1TNA_OS 334 0.1673 (492/2940) 1 Intact Os_TE_724110 Os_TE_724082 Chr10 4858838 4858839 + SEVERIN-2 1952 0.0245 (73/2982) 0 * * Os_TE_724067 Chr10 4854321 4849875 - CRATA 4786 0.1698 (500/2944) 1 Intact Os_TE_724066 Os_TE_724066 Chr10 4849212 4854321 + CRATA 4786 0.1634 (478/2926) 1 Intact Os_TE_724067 Os_TE_724062 Chr10 4847616 4847615 - OSTE18 129 0.5214 (1537/2948) 0 * * Os_TE_724059 Chr10 4847161 4847162 + RIRE3A_LTR 10580 0.0007 (2/2948) 0 * * Os_TE_724058 Chr10 4847147 4847148 + ORSiTETNOOT00107 906 0.0003 (1/2951) 0 * * Os_TE_724056 Chr10 4845974 4845975 - ORSgTEMT00900099 250 0.0003 (1/2983) 0 * * Os_TE_724046 Chr10 4842195 4842196 - OSTE20 496 0.0010 (3/2985) 0 * Os_TE_724045 Os_TE_724045 Chr10 4842191 4842190 - OSTE20 496 0.0010 (3/2986) 0 * Os_TE_724046 Os_TE_724039 Chr10 4839709 4839710 - GAIJIN 147 0.0003 (1/2989) 0 * * Os_TE_724011 Chr10 4832697 4832696 + ORSgTEMT02400041 225 0.0087 (26/2996) 0 * Os_TE_724010 Os_TE_724010 Chr10 4832695 4832696 - ORSgTEMT02400179 221 0.0084 (25/2993) 0 * Os_TE_724011 Os_TE_723945 Chr10 4782751 4782752 + RIRE5-LTR_OS 6427 0.0328 (98/2987) 0 * Os_TE_723944 Os_TE_723944 Chr10 4782744 4782743 - RIRE5-LTR_OS 6427 0.0357 (107/2994) 0 * Os_TE_723945 Os_TE_723938 Chr10 4781901 4781902 - RIRE2_LTR 11306 0.0074 (22/2993) 0 * Os_TE_723937 Os_TE_723937 Chr10 4781897 4781896 + RIRE2_LTR 11306 0.0077 (23/2993) 0 * Os_TE_723938 Os_TE_723925 Chr10 4775564 4763884 - RETROSAT2LTR 12796 0.1723 (504/2925) 1 Intact * Os_TE_723894 Chr10 4759766 4759767 + ORSgTEMT00900760 239 0.0021 (6/2906) 0 * * Os_TE_723855 Chr10 4750114 4750113 - SZ-37_LTR 12001 0.0025 (7/2781) 0 * * Os_TE_723827 Chr10 4735736 4735737 + CPR1_LTR 9493 0.7554 (2193/2903) 0 * * Os_TE_723817 Chr10 4732940 4732941 - TRUNCATOR 2918 0.0017 (5/2902) 0 * * Os_TE_723728 Chr10 4709468 4709469 - COPI2_LTR 4733 0.0003 (1/2915) 0 * * Os_TE_723725 Chr10 4708148 4708149 - RIREX_LTR 8828 0.0886 (257/2902) 0 * Os_TE_723724 Os_TE_723724 Chr10 4708144 4708143 + RIREX_LTR 8828 0.0882 (256/2901) 0 * Os_TE_723725 Os_TE_723718 Chr10 4706258 4706259 + SPMLIKE 10989 0.0031 (9/2910) 0 * Os_TE_723717 Os_TE_723717 Chr10 4706256 4706255 - ORSgTETN00200001 10994 0.0031 (9/2909) 0 * Os_TE_723718 Os_TE_723715 Chr10 4704701 4704702 - SZ-67LTR 1540 0.0017 (5/2883) 0 * Os_TE_723714 Os_TE_723714 Chr10 4704697 4704696 + SZ-67LTR 1540 0.0017 (5/2888) 0 * Os_TE_723715 Os_TE_723713 Chr10 4704482 4704483 + ORSiCMCM00100019 2717 0.0003 (1/2898) 0 * * Os_TE_723711 Chr10 4704437 4704438 - RIRE3_LTR 12054 0.0013 (4/2966) 0 * Os_TE_723710 Os_TE_723710 Chr10 4704433 4704432 + RIRE3_LTR 12054 0.0014 (4/2900) 0 * Os_TE_723711 Os_TE_723696 Chr10 4700586 4700585 + OSTONOR1_LTR 6440 0.0066 (19/2892) 0 * * Os_TE_723689 Chr10 4698280 4698281 - RIRE2_LTR 11306 0.0197 (57/2897) 0 * Os_TE_723688 Os_TE_723688 Chr10 4698276 4698275 - ORSgTERT00201216 11284 0.0197 (57/2891) 0 * Os_TE_723689 Os_TE_723687 Chr10 4697252 4697253 - RIREX_LTR 8828 0.0135 (39/2888) 0 * Os_TE_723686 Os_TE_723686 Chr10 4697248 4697247 + RIREX_LTR 8828 0.0131 (38/2891) 0 * Os_TE_723687 Os_TE_723685 Chr10 4697180 4697181 + RIRE2_LTR 11306 0.0031 (9/2895) 0 * Os_TE_723684 Os_TE_723684 Chr10 4697176 4697175 - RIRE2_LTR 11306 0.0028 (8/2890) 0 * Os_TE_723685 Os_TE_723671 Chr10 4684819 4684820 - CACTA-Q 2268 0.0094 (28/2984) 0 * * Os_TE_723661 Chr10 4680463 4680464 - COPIA2-LTR_OS 6433 0.0003 (1/2943) 0 * Os_TE_723660 Os_TE_723660 Chr10 4680459 4680458 + COPIA2-LTR_OS 6433 0.0003 (1/2945) 0 * Os_TE_723661 Os_TE_723659 Chr10 4680220 4680221 - COPI2_LTR 4733 0.0003 (1/2958) 0 * Os_TE_723658 Os_TE_723658 Chr10 4680216 4680215 + COPI2_LTR 4733 0.0003 (1/2955) 0 * Os_TE_723659 Os_TE_723654 Chr10 4679576 4679577 + AMYLTP 383 0.7005 (2084/2975) 0 * Os_TE_723653 Os_TE_723653 Chr10 4679569 4679568 - AMYLTP 383 0.6912 (2021/2924) 0 * Os_TE_723654 Os_TE_723644 Chr10 4678366 4678367 - TELIA 141 0.0003 (1/2923) 0 * * Os_TE_723625 Chr10 4668078 4668079 + MUDRN2_OS 756 0.0066 (19/2866) 0 * Os_TE_723624 Os_TE_723624 Chr10 4668070 4668069 - MUDRN3_OS 903 0.0063 (18/2860) 0 * Os_TE_723625 Os_TE_723623 Chr10 4666990 4666989 - ORSgTETNOOT02245 144 0.0004 (1/2309) 0 * * Os_TE_723610 Chr10 4658369 4658370 - ORSgTEMT03600087 443 0.0027 (8/2974) 0 * * Os_TE_723565 Chr10 4645172 4645171 + NDNA1TNA_OS 334 0.0003 (1/2987) 0 * * Os_TE_723563 Chr10 4644773 4644774 - NDNA2TNA_OS 346 0.0011 (3/2847) 0 * * Os_TE_723552 Chr10 4634741 4634742 + RIREX_LTR 8828 0.0013 (4/2979) 0 * Os_TE_723551 Os_TE_723551 Chr10 4634737 4634736 - RIREX_LTR 8828 0.0013 (4/2989) 0 * Os_TE_723552 Os_TE_723533 Chr10 4630334 4630335 + ORSgTEMT00700017 386 0.0007 (2/2965) 0 * * Os_TE_723496 Chr10 4620078 4620077 - DNAUN1_OS 408 0.0027 (5/1866) 0 * * Os_TE_723481 Chr10 4616511 4616510 + COPIA1-LTR_OS 9292 0.0017 (5/2988) 0 * * Os_TE_723459 Chr10 4606696 4606697 + RIREX_LTR 8828 0.0014 (4/2958) 0 * Os_TE_723458 Os_TE_723458 Chr10 4606692 4606691 - RIREX_LTR 8828 0.0013 (4/2975) 0 * Os_TE_723459 Os_TE_723454 Chr10 4605221 4605222 + COPIA1-LTR_OS 9292 0.0007 (2/2943) 0 * * Os_TE_723448 Chr10 4604887 4604886 + RIREX_LTR 8828 0.0017 (5/2949) 0 * * Os_TE_723439 Chr10 4602358 4602359 - RIRE2_LTR 11306 0.0118 (35/2961) 0 * * Os_TE_723431 Chr10 4599077 4599076 - TRUNCATOR 2918 0.0057 (17/2963) 0 * * Os_TE_723425 Chr10 4597013 4597014 - ORSgTETN00200001 10994 0.0007 (2/2934) 0 * * Os_TE_723420 Chr10 4592681 4592682 + ORSiCMCM00100019 2717 0.0082 (24/2944) 0 * * Os_TE_723409 Chr10 4583236 4583237 + SZ-37_LTR 12001 0.0007 (2/2990) 0 * * Os_TE_723403 Chr10 4582288 4582287 - TRUNCATOR 2918 0.0244 (56/2293) 0 * * Os_TE_723276 Chr10 4539476 4539475 - ORSgTEMT01700029 143 0.0015 (4/2719) 0 * * Os_TE_723196 Chr10 4502254 4502255 - RETRO1_LTR 8314 0.0094 (28/2992) 0 * Os_TE_723195 Os_TE_723195 Chr10 4502250 4502249 + RETRO2_LTR 12874 0.0094 (28/2985) 0 * Os_TE_723196 Os_TE_723172 Chr10 4493438 4493437 - TRUNCATOR 2918 0.1813 (527/2907) 0 * Os_TE_723171 Os_TE_723171 Chr10 4493437 4493438 + TRUNCATOR 2918 0.1783 (527/2955) 0 * Os_TE_723172 Os_TE_723169 Chr10 4491884 4491885 + ORSiTERTOOT00226 792 0.0003 (1/2985) 0 * Os_TE_723168 Os_TE_723168 Chr10 4491880 4491879 - SZ-22_LTR 4403 0.0003 (1/2985) 0 * Os_TE_723169 Os_TE_723162 Chr10 4489594 4489595 - RETROSAT5_LTR 13878 0.0057 (17/2988) 0 * Os_TE_723161 Os_TE_723161 Chr10 4489590 4489589 + ORSiTERT00200145 12238 0.0054 (16/2989) 0 * Os_TE_723162 Os_TE_723159 Chr10 4488519 4483105 - RETRO2_LTR 12874 0.0989 (294/2974) 1 Intact * Os_TE_723153 Chr10 4482245 4482244 - RIREX_LTR 8828 0.0003 (1/2995) 0 * * Os_TE_723144 Chr10 4479505 4479506 - ENSPM6_OS 9815 0.0294 (88/2998) 0 * Os_TE_723143 Os_TE_723143 Chr10 4479503 4479502 + ENSPM5_OS 9581 0.0294 (88/2998) 0 * Os_TE_723144 Os_TE_723130 Chr10 4470127 4473036 + ORSiCMCM00100019 2717 0.0835 (249/2983) 1 Intact * Os_TE_723129 Chr10 4469632 4469633 - EnSpm-11_OS 13126 0.0128 (38/2975) 0 * Os_TE_723128 Os_TE_723128 Chr10 4469630 4469629 + EnSpm-11_OS 13126 0.0128 (38/2976) 0 * Os_TE_723129 Os_TE_723108 Chr10 4467501 4467502 + RIRE3_LTR 12054 0.0087 (26/2975) 0 * Os_TE_723107 Os_TE_723107 Chr10 4467497 4467496 - RIRE3_LTR 12054 0.0091 (27/2977) 0 * Os_TE_723108 Os_TE_723098 Chr10 4455852 4466314 + SPMLIKE 10989 0.0784 (232/2961) 1 Intact * Os_TE_723089 Chr10 4454548 4454547 - RIRE3_LTR 12054 0.0003 (1/2971) 0 * * Os_TE_723069 Chr10 4444896 4444897 + COPIA2-LTR_OS 6433 0.0030 (4/1332) 0 * Os_TE_723068 Os_TE_723068 Chr10 4444892 4444891 - COPIA2-LTR_OS 6433 0.0017 (4/2352) 0 * Os_TE_723069 Os_TE_723065 Chr10 4441319 4441320 + ORSgTETNOOT01219 231 0.0446 (103/2307) 0 * Os_TE_723064 Os_TE_723064 Chr10 4441313 4441312 + ORSgTETNOOT00908 242 0.0455 (102/2242) 0 * Os_TE_723065 Os_TE_723063 Chr10 4441175 4441176 - RIRE2_LTR 11306 0.8348 (1850/2216) 0 * Os_TE_723062 Os_TE_723062 Chr10 4441171 4441170 - ORSgTERT00201216 11284 0.8412 (1939/2305) 0 * Os_TE_723063 Os_TE_723019 Chr10 4418433 4418434 - MERMITEH 1307 0.7034 (1836/2610) 0 * Os_TE_723018 Os_TE_723018 Chr10 4418428 4418427 + MERMITED 1572 0.7123 (1901/2669) 0 * Os_TE_723019 Os_TE_723014 Chr10 4417078 4416184 + COPIA2-LTR_OS 6433 0.1050 (254/2419) 1 Solo_LTR * Os_TE_722986 Chr10 4409297 4409298 - ORSgTETN00200001 10994 0.0091 (24/2646) 0 * Os_TE_722985 Os_TE_722985 Chr10 4409295 4409294 + SPMLIKE 10989 0.0091 (23/2530) 0 * Os_TE_722986 Os_TE_722978 Chr10 4405451 4405450 + TRUNCATOR 2918 0.0045 (5/1114) 0 * Os_TE_722977 Os_TE_722977 Chr10 4405450 4405451 - TRUNCATOR 2918 0.0045 (5/1113) 0 * Os_TE_722978 Os_TE_722876 Chr10 4367719 4367720 - TRUNCATOR 2918 0.2929 (295/1007) 0 * * Os_TE_722859 Chr10 4361374 4361375 + OSTE33 1012 0.0009 (1/1132) 0 * * Os_TE_722857 Chr10 4361178 4361177 + SPMLIKE 10989 0.0084 (21/2498) 0 * * Os_TE_722847 Chr10 4358913 4358914 - TRUNCATOR 2918 0.0193 (19/985) 0 * * Os_TE_722846 Chr10 4358491 4351059 + GYPSY-B_LTR 7068 0.3735 (1101/2948) 1 Intact Os_TE_722833 Os_TE_722833 Chr10 4351059 4358491 - GYPSY1-LTR_OS 8900 0.3737 (1107/2962) 1 Intact Os_TE_722846 Os_TE_722820 Chr10 4346327 4346326 + STOWAWAY13_OS 251 0.6917 (1907/2757) 0 * * Os_TE_722793 Chr10 4336884 4336883 - RIRE3_LTR 12054 0.0342 (102/2981) 0 * * Os_TE_722792 Chr10 4336690 4336691 - ORSgTEMT02400179 221 0.0129 (4/310) 0 * * Os_TE_722774 Chr10 4328183 4328182 + OsSN3 183 0.6402 (1890/2952) 0 * * Os_TE_722773 Chr10 4328175 4328006 - F804 170 0.3749 (1098/2929) 1 Intact * Os_TE_722764 Chr10 4326340 4326339 + CRM-LTR_OS 7749 0.8770 (2603/2968) 0 * * Os_TE_722761 Chr10 4325699 4325698 - TREP215 239 0.0014 (4/2944) 0 * Os_TE_722760 Os_TE_722760 Chr10 4325696 4325697 + ORSgTEMT01602141 239 0.0010 (3/2938) 0 * Os_TE_722761 Os_TE_722758 Chr10 4325133 4325134 + CLOUD 734 0.0014 (4/2935) 0 * Os_TE_722757 Os_TE_722757 Chr10 4325125 4325124 - CLOUD 734 0.0013 (4/2968) 0 * Os_TE_722758 Os_TE_722748 Chr10 4324628 4324629 - COPIA2-LTR_OS 6433 0.0013 (4/2970) 0 * Os_TE_722747 Os_TE_722747 Chr10 4324624 4324623 + COPIA2-LTR_OS 6433 0.0013 (4/2976) 0 * Os_TE_722748 Os_TE_722737 Chr10 4321396 4321397 + TWIFB1 3737 0.0014 (4/2815) -1 * * Os_TE_722736 Chr10 4320850 4320421 + MPING 430 0.0018 (5/2857) 1 Intact Os_TE_722735 Os_TE_722735 Chr10 4320421 4320850 - MPING 430 0.0018 (5/2759) 1 Intact Os_TE_722736 Os_TE_722717 Chr10 4317825 4317826 + RIREX_LTR 8828 0.0014 (4/2941) 0 * Os_TE_722716 Os_TE_722716 Chr10 4317821 4317820 - RIREX_LTR 8828 0.0014 (4/2950) 0 * Os_TE_722717 Os_TE_722715 Chr10 4317569 4317570 - COPIA2-LTR_OS 6433 0.0003 (1/2943) 0 * Os_TE_722714 Os_TE_722714 Chr10 4317565 4317564 + COPIA2-LTR_OS 6433 0.0003 (1/2906) 0 * Os_TE_722715 Os_TE_722703 Chr10 4315591 4315592 + RIRE2_LTR 11306 0.0003 (1/2871) 0 * Os_TE_722702 Os_TE_722702 Chr10 4315587 4315586 - RIRE2_LTR 11306 0.0003 (1/2861) 0 * Os_TE_722703 Os_TE_722685 Chr10 4300084 4311148 - ORSgTETN00200001 10994 0.0772 (205/2656) 1 Intact * Os_TE_722673 Chr10 4298352 4298351 + ORSgTEMT00901844 250 0.0017 (5/2904) 0 * Os_TE_722672 Os_TE_722672 Chr10 4298348 4298349 - ORSgTEMT00900099 250 0.0017 (5/2933) 0 * Os_TE_722673 Os_TE_722655 Chr10 4293902 4293903 - SZ-22_LTR 4403 0.0007 (2/2964) 0 * Os_TE_722654 Os_TE_722654 Chr10 4293898 4293897 + ORSiTERTOOT00226 792 0.0007 (2/2973) 0 * Os_TE_722655 Os_TE_722653 Chr10 4293878 4293879 + STOWAWAY11_OS 292 0.0111 (33/2984) 0 * Os_TE_722652 Os_TE_722652 Chr10 4293877 4293876 - STOWAWAY11_OS 292 0.0111 (33/2977) 0 * Os_TE_722653 Os_TE_722638 Chr10 4290863 4290864 + ORSgTETNOOT01275 140 0.0568 (170/2995) 0 * * Os_TE_722635 Chr10 4289548 4289549 - ORSgTETN00200001 10994 0.0892 (250/2804) 0 * * Os_TE_722612 Chr10 4286720 4286721 + MERMITEB 1610 0.0267 (71/2662) 0 * * Os_TE_722589 Chr10 4277622 4277623 - RETROSAT2LTR 12796 0.0014 (4/2919) 0 * * Os_TE_722575 Chr10 4275910 4275911 + RIRE2_LTR 11306 0.0098 (29/2971) 0 * * Os_TE_722560 Chr10 4273438 4273439 - DELAY 226 0.0023 (7/2987) 0 * * Os_TE_722558 Chr10 4273223 4273224 + SPMLIKE 10989 0.1094 (326/2979) 0 * * Os_TE_722538 Chr10 4262522 4262523 - ORSiTETNOOT00200 3563 0.0081 (24/2947) 0 * Os_TE_722537 Os_TE_722537 Chr10 4262515 4262514 + TWIFBIG 3567 0.0092 (27/2942) 0 * Os_TE_722538 Os_TE_722526 Chr10 4260631 4260632 + COPIA2-LTR_OS 6433 0.0047 (14/2955) 0 * * Os_TE_722504 Chr10 4251227 4251226 - AMYLTP 383 0.0040 (12/2968) 0 * * Os_TE_722490 Chr10 4247042 4247043 + MuDR4_OS 7610 0.0478 (137/2868) 0 * * Os_TE_722478 Chr10 4244567 4244566 - ORSgTEMT02400246 177 0.3849 (1135/2949) 0 * * Os_TE_722457 Chr10 4236828 4236827 - RETRO2_LTR 12874 0.0013 (4/2995) 0 * * Os_TE_722424 Chr10 4212229 4212230 + ORSiTERTOOT00296 5553 0.0004 (1/2287) 0 * Os_TE_722423 Os_TE_722423 Chr10 4212225 4212224 - SC-3_LTR 5748 0.0004 (1/2288) 0 * Os_TE_722424 Os_TE_722344 Chr10 4097264 4097265 - RIRE2_LTR 11306 0.2738 (360/1315) 0 * Os_TE_722343 Os_TE_722343 Chr10 4097260 4097259 - ORSgTERT00201216 11284 0.2718 (358/1317) 0 * Os_TE_722344 Os_TE_722329 Chr10 4082187 4081981 - ORSgTEMT01400022 212 0.3088 (654/2118) 1 Intact Os_TE_722327 Os_TE_722327 Chr10 4081949 4082186 + ORSgTEMT01400031 216 0.2336 (696/2979) 1 Intact Os_TE_722329 Os_TE_722323 Chr10 4079367 4079368 + TNR2A 152 0.1977 (585/2959) 0 * * Os_TE_722316 Chr10 4075686 4075685 - RIRE2_LTR 11306 0.0003 (1/2975) 0 * * Os_TE_722315 Chr10 4074708 4074709 - CACTA-Q 2268 0.3917 (1071/2734) 0 * * Os_TE_722313 Chr10 4074491 4063404 - ORSgTETN00200001 10994 0.0794 (228/2873) 1 Intact * Os_TE_722294 Chr10 4062878 4062877 - RETROSAT2LTR 12796 0.0063 (12/1915) 0 * * Os_TE_722291 Chr10 4062214 4062213 + SZ-36LTR 5825 0.4777 (1127/2359) 0 * * Os_TE_722289 Chr10 4061878 4061877 + SZ-29LTR 1393 0.1298 (235/1810) 0 * * Os_TE_722268 Chr10 4059090 4058915 + COWARD-3 221 0.3737 (287/768) 1 Intact Os_TE_722266 Os_TE_722266 Chr10 4058915 4059090 - COWARD 200 0.1311 (298/2273) 1 Intact Os_TE_722268 Os_TE_722265 Chr10 4057688 4057689 - COPIA2-LTR_OS 6433 0.0003 (1/2939) 0 * * Os_TE_722263 Chr10 4057553 4057554 + SPMLIKE 10989 0.0003 (1/2873) 0 * Os_TE_722262 Os_TE_722262 Chr10 4057551 4057550 - ORSgTETN00200001 10994 0.0003 (1/2883) 0 * Os_TE_722263 Os_TE_722240 Chr10 4055778 4055777 + Mudr5_OS 5952 0.1369 (398/2908) 0 * * Os_TE_722233 Chr10 4054373 4054372 - ENSPM4_OS 11610 0.0004 (1/2508) 0 * * Os_TE_722228 Chr10 4050006 4050007 + TNR2A 152 0.0141 (40/2830) 0 * * Os_TE_722196 Chr10 4034691 4034692 - ORSgTEMT02400246 177 0.0007 (2/2994) 0 * * Os_TE_722190 Chr10 4027005 4027006 + ORSiTERTOOT00296 5553 0.0023 (7/2990) 0 * Os_TE_722189 Os_TE_722189 Chr10 4027001 4027000 - SC-3_LTR 5748 0.0023 (7/2990) 0 * Os_TE_722190 Os_TE_722187 Chr10 4024934 4024933 + ORSgTEMT00100272 356 0.0017 (5/2947) 0 * * Os_TE_722166 Chr10 4020332 4020331 + DS-RICE2N 613 0.0105 (25/2371) 0 * * Os_TE_722158 Chr10 4019222 4019221 + ORSgTEMT00100531 325 0.0077 (23/2998) 0 * Os_TE_722157 Os_TE_722157 Chr10 4019214 4019215 + NDNA1TNA_OS 334 0.0080 (24/2996) 0 * Os_TE_722158 Os_TE_722134 Chr10 4009095 4009096 - ORSgTERT00201216 11284 0.0010 (3/2911) 0 * Os_TE_722133 Os_TE_722133 Chr10 4009091 4009090 - RIRE2_LTR 11306 0.0007 (2/2932) 0 * Os_TE_722134 Os_TE_722130 Chr10 4007828 4007829 + SPMLIKE 10989 0.0007 (2/2699) 0 * Os_TE_722129 Os_TE_722129 Chr10 4007826 4007825 - ORSgTETN00200001 10994 0.0004 (1/2702) 0 * Os_TE_722130 Os_TE_722118 Chr10 4002109 4002108 + CACTA-D 1038 0.0115 (34/2962) 0 * * Os_TE_722100 Chr10 3994819 3994818 - RETRO1_LTR 8314 0.0003 (1/2925) 0 * * Os_TE_722079 Chr10 3985712 3985713 - EnSpm-11_OS 13126 0.1588 (474/2984) 0 * Os_TE_722078 Os_TE_722078 Chr10 3985711 3985710 + EnSpm-11_OS 13126 0.1582 (472/2984) 0 * Os_TE_722079 Os_TE_722070 Chr10 3984603 3984604 + INDITTO 263 0.0060 (18/2990) 0 * * Os_TE_722055 Chr10 3976116 3976117 + COPI2_LTR 4733 0.0007 (2/2994) 0 * Os_TE_722054 Os_TE_722054 Chr10 3976112 3976111 - COPI2_LTR 4733 0.0007 (2/2992) 0 * Os_TE_722055 Os_TE_722047 Chr10 3972221 3972222 - ORSgTEMT00500675 140 0.0009 (2/2250) -1 * * Os_TE_722037 Chr10 3968183 3968184 - RIREX_LTR 8828 0.0007 (2/2988) 0 * Os_TE_722036 Os_TE_722036 Chr10 3968179 3968178 + RIREX_LTR 8828 0.0007 (2/2996) 0 * Os_TE_722037 Os_TE_722035 Chr10 3968090 3968091 - ORSiTERT00100062 5674 0.0003 (1/2995) 0 * Os_TE_722034 Os_TE_722034 Chr10 3968086 3968085 + OSTONOR1_LTR 6440 0.0003 (1/2991) 0 * Os_TE_722035 Os_TE_722021 Chr10 3957967 3957968 + GYPSY-A_LTR 8951 0.0013 (4/2974) 0 * * Os_TE_722007 Chr10 3955295 3950269 + CPSC4B_LTR 5343 0.1566 (372/2375) 1 Intact * Os_TE_721994 Chr10 3948765 3948766 + KIDDOB 280 0.0037 (11/2943) 0 * * Os_TE_721982 Chr10 3943850 3943849 + ORSgTEMT01602181 239 0.0039 (3/770) 0 * * Os_TE_721981 Chr10 3943743 3943744 + ORSgTETNOOT00032 218 0.0292 (22/753) 0 * * Os_TE_721973 Chr10 3942417 3942418 - INDITTO 263 0.0750 (224/2985) 0 * Os_TE_721972 Os_TE_721972 Chr10 3942415 3942414 + INDITTO 263 0.0730 (216/2957) 0 * Os_TE_721973 Os_TE_721970 Chr10 3940311 3940090 - ORSgTETNOOT00355 222 0.6636 (1963/2958) 1 Intact * Os_TE_721945 Chr10 3933365 3933364 + SZ-62LTR 3649 0.0007 (2/2838) 0 * * Os_TE_721944 Chr10 3933292 3933291 - ORSgTEMT00501259 146 0.0004 (1/2680) 0 * * Os_TE_721901 Chr10 3915001 3915002 - RETRO1_LTR 8314 0.0035 (7/2012) 0 * Os_TE_721900 Os_TE_721900 Chr10 3914997 3914996 + RETRO2A_LTR 12895 0.0040 (8/2007) 0 * Os_TE_721901 Os_TE_721890 Chr10 3909465 3909464 - SC-3_LTR 5748 0.0122 (26/2126) 0 * * Os_TE_721886 Chr10 3908438 3908439 + COPIA2-LTR_OS 6433 0.0003 (1/2884) 0 * * Os_TE_721859 Chr10 3895804 3895803 - ORSgTEMT02000040 196 0.0020 (4/2017) 0 * * Os_TE_721798 Chr10 3859212 3859211 + COPIA2-LTR_OS 6433 0.0025 (5/1963) 0 * * Os_TE_721763 Chr10 3848743 3849079 + OLO24 345 0.7440 (2226/2992) 1 Intact * Os_TE_721761 Chr10 3848678 3848677 - NDNA1TNA_OS 334 0.0312 (90/2883) 0 * * Os_TE_721750 Chr10 3846855 3846854 + STOWAWAY51_OS 246 0.0003 (1/2986) 0 * Os_TE_721749 Os_TE_721749 Chr10 3846849 3846850 - STOWAWAY51_OS 246 0.0003 (1/2984) 0 * Os_TE_721750 Os_TE_721737 Chr10 3843967 3843968 + NDNA1TNA_OS 334 0.0013 (4/2964) 0 * * Os_TE_721729 Chr10 3838503 3838504 + ORSiTERTOOT00296 5553 0.0003 (1/2987) 0 * Os_TE_721728 Os_TE_721728 Chr10 3838499 3838498 - SC-3_LTR 5748 0.0003 (1/2989) 0 * Os_TE_721729 Os_TE_721719 Chr10 3828883 3828882 - TRUNCATOR 2918 0.0014 (4/2803) 0 * Os_TE_721718 Os_TE_721718 Chr10 3828882 3828883 + TRUNCATOR 2918 0.0018 (5/2800) 0 * Os_TE_721719 Os_TE_721717 Chr10 3828626 3828627 - RETRO2_LTR 12874 0.0007 (2/2991) 0 * Os_TE_721716 Os_TE_721716 Chr10 3828622 3828621 + ORSgTERTOOT00009 12852 0.0004 (1/2252) 0 * Os_TE_721717 Os_TE_721714 Chr10 3828371 3828370 - OSLINE1-2 7128 0.0128 (38/2971) 0 * * Os_TE_721711 Chr10 3828031 3828032 - SZ-5LTR 1223 0.8751 (2579/2947) 0 * * Os_TE_721710 Chr10 3827452 3827451 + ORSgTEMT00700017 386 0.0017 (5/2988) 0 * Os_TE_721709 Os_TE_721709 Chr10 3827445 3827446 - ORSgTEMT00700002 381 0.0013 (4/2977) 0 * Os_TE_721710 Os_TE_721708 Chr10 3827387 3827388 + TELIA 141 0.0010 (3/2970) 0 * Os_TE_721707 Os_TE_721707 Chr10 3827379 3827378 - TELIA 141 0.0010 (3/2971) 0 * Os_TE_721708 Os_TE_721687 Chr10 3813820 3813821 - ORSgTEMT01600520 239 0.0014 (4/2857) 0 * * Os_TE_721685 Chr10 3813301 3813300 + ORSgTETNOOT00032 218 0.0621 (178/2868) 0 * * Os_TE_721649 Chr10 3803883 3803884 + ORSgTEMT01602029 239 0.0208 (36/1731) 0 * * Os_TE_721638 Chr10 3798478 3795961 - SEVERIN-2 1952 0.7344 (2157/2937) 1 Intact Os_TE_721632 Os_TE_721632 Chr10 3795961 3798477 + SEVERIN-2 1952 0.7283 (2128/2922) 1 Intact Os_TE_721638 Os_TE_721623 Chr10 3792450 3792221 - ORSgTEMT01601974 230 0.8035 (2183/2717) 1 Intact * Os_TE_721612 Chr10 3790070 3790069 - TELIA 141 0.0017 (5/2990) 0 * * Os_TE_721607 Chr10 3789418 3788200 + COPIA1-LTR_OS 9292 0.7606 (2224/2924) 1 Solo_LTR Os_TE_721603 Os_TE_721603 Chr10 3788199 3789375 - COPIA1-LTR_OS 9292 0.7418 (2218/2990) 1 Solo_LTR Os_TE_721607 Os_TE_721602 Chr10 3787787 3787788 - ORSgTETN00200001 10994 0.0715 (214/2993) 0 * Os_TE_721601 Os_TE_721601 Chr10 3787785 3787784 + SPMLIKE 10989 0.0721 (215/2982) 0 * Os_TE_721602 Os_TE_721594 Chr10 3783230 3783229 - SZ-48LTR 3632 0.5669 (1694/2988) 0 * * Os_TE_721585 Chr10 3779590 3779387 - LTR10_OS 202 0.7439 (2216/2979) 1 Intact * Os_TE_721562 Chr10 3772726 3772727 + ORSiTERTOOT00028 8600 0.0005 (1/2101) 0 * Os_TE_721561 Os_TE_721561 Chr10 3772722 3772721 - TRUNCATOR2_LTR 2904 0.0005 (1/2077) 0 * Os_TE_721562 Os_TE_721551 Chr10 3760924 3760923 + COPIA3-LTR_OS 5061 0.0022 (5/2233) 0 * * Os_TE_721475 Chr10 3730243 3730242 + RIREX_LTR 8828 0.0014 (3/2181) 0 * * Os_TE_721473 Chr10 3729471 3729472 - NDNA1TNA_OS 334 0.0014 (3/2179) 0 * * Os_TE_721472 Chr10 3728368 3728369 - COPIA2-LTR_OS 6433 0.0005 (1/2206) 0 * Os_TE_721471 Os_TE_721471 Chr10 3728364 3728363 + COPIA2-LTR_OS 6433 0.0009 (2/2223) 0 * Os_TE_721472 Os_TE_721428 Chr10 3717967 3717966 + ORSgTEMT01602181 239 0.0005 (1/2163) 0 * * Os_TE_721425 Chr10 3717183 3717184 - SC-3_LTR 5748 0.0013 (3/2246) 0 * Os_TE_721424 Os_TE_721424 Chr10 3717179 3717178 + ORSiTERTOOT00296 5553 0.0013 (4/2992) 0 * Os_TE_721425 Os_TE_721409 Chr10 3711073 3711072 - ORSgTETN00200001 10994 0.0072 (16/2213) 0 * * Os_TE_721408 Chr10 3710826 3710825 - EnSpm-16_OS 13336 0.0022 (5/2228) 0 * * Os_TE_721407 Chr10 3709719 3709720 - ORSgTEMT00200027 144 0.0004 (1/2224) 0 * * Os_TE_721398 Chr10 3706093 3706094 + RETRO2_LTR 12874 0.3074 (912/2967) 0 * Os_TE_721397 Os_TE_721397 Chr10 3706089 3706088 - RETRO2_LTR 12874 0.4030 (872/2164) 0 * Os_TE_721398 Os_TE_721396 Chr10 3704984 3704985 + RIREX_LTR 8828 0.0007 (2/2996) 0 * Os_TE_721395 Os_TE_721395 Chr10 3704980 3704979 - RIREX_LTR 8828 0.0009 (2/2245) 0 * Os_TE_721396 Os_TE_721392 Chr10 3703658 3703659 - ORSgTETN00200001 10994 0.0081 (24/2967) 0 * Os_TE_721391 Os_TE_721391 Chr10 3703656 3703655 + SPMLIKE 10989 0.0091 (26/2844) 0 * Os_TE_721392 Os_TE_721365 Chr10 3693656 3693657 + RIREX_LTR 8828 0.0068 (20/2950) 0 * Os_TE_721364 Os_TE_721364 Chr10 3693652 3693651 - RIREX_LTR 8828 0.0065 (19/2937) 0 * Os_TE_721365 Os_TE_721360 Chr10 3691904 3691905 - SZ-35LTR 3853 0.0004 (1/2241) 0 * * Os_TE_721356 Chr10 3688448 3688449 - ORSgTERT00201216 11284 0.0540 (161/2983) 0 * Os_TE_721355 Os_TE_721355 Chr10 3688444 3688443 - RIRE2_LTR 11306 0.0532 (158/2968) 0 * Os_TE_721356 Os_TE_721316 Chr10 3668287 3668288 - BAJIELTR 4500 0.0003 (1/2979) 0 * * Os_TE_721275 Chr10 3650899 3650898 - ORSgTEMT02400246 177 0.0028 (6/2141) 0 * Os_TE_721274 Os_TE_721274 Chr10 3650898 3650899 - TYPEM 227 0.0028 (6/2142) 0 * Os_TE_721275 Os_TE_721262 Chr10 3646315 3646316 - ORSgTETNOOT00544 147 0.5815 (1694/2913) 0 * * Os_TE_721260 Chr10 3646064 3646065 - COPIA2-LTR_OS 6433 0.0003 (1/2910) 0 * * Os_TE_721253 Chr10 3644418 3644419 - ORSgTEMT01700159 154 0.6693 (1787/2670) 0 * * Os_TE_721252 Chr10 3644262 3644263 - COWARD 200 0.5872 (1589/2706) 0 * * Os_TE_721239 Chr10 3635009 3642959 + ENSPM3_OS 10837 0.4821 (1283/2661) 1 Intact * Os_TE_721236 Chr10 3633960 3633959 - ORSgTEMT01701302 154 0.5696 (1624/2851) 0 * Os_TE_721235 Os_TE_721235 Chr10 3633955 3633956 - ORSgTEMT01701348 105 0.5927 (1765/2978) 0 * Os_TE_721236 Os_TE_721229 Chr10 3630045 3630044 + STOWAWAY18_OS 216 0.5504 (1528/2776) 0 * * Os_TE_721213 Chr10 3625405 3625988 - ORSiTERTOOT00269 10834 0.4782 (1261/2637) 1 Intact * Os_TE_721197 Chr10 3618802 3618803 + COPIA2-LTR_OS 6433 0.0007 (2/2943) 0 * * Os_TE_721191 Chr10 3617091 3617090 + MuDR4_OS 7610 0.0062 (18/2896) 0 * * Os_TE_721173 Chr10 3599431 3599430 + TRUNCATOR 2918 0.1464 (438/2991) 0 * Os_TE_721172 Os_TE_721172 Chr10 3599430 3599431 - TRUNCATOR 2918 0.1407 (419/2977) 0 * Os_TE_721173 Os_TE_721168 Chr10 3593935 3593934 + LTR10_OS 202 0.0011 (3/2828) 0 * * Os_TE_721167 Chr10 3593894 3593893 - RETRO2_LTR 12874 0.8921 (2537/2844) 0 * * Os_TE_721151 Chr10 3582259 3582258 + RIREX_LTR 8828 0.0007 (2/2994) 0 * * Os_TE_721114 Chr10 3553562 3553561 - TRUNCATOR 2918 0.0037 (11/2991) 0 * * Os_TE_721082 Chr10 3526738 3526737 + SC-4_LTR 5218 0.0079 (21/2654) 0 * * Os_TE_721080 Chr10 3526173 3526172 - ORSiTERTOOT00441 4741 0.0003 (1/2994) 0 * * Os_TE_721079 Chr10 3525996 3525997 - COPIA2-LTR_OS 6433 0.0007 (2/2987) 0 * * Os_TE_721070 Chr10 3521391 3521390 - COPI2_LTR 4733 0.0003 (1/2943) 0 * * Os_TE_721067 Chr10 3519853 3519854 - COPIA2-LTR_OS 6433 0.0007 (2/2966) 0 * Os_TE_721066 Os_TE_721066 Chr10 3519849 3519848 + COPIA2-LTR_OS 6433 0.0007 (2/2963) 0 * Os_TE_721067 Os_TE_721059 Chr10 3512298 3512299 + RIREX_LTR 8828 0.0004 (1/2833) 0 * Os_TE_721058 Os_TE_721058 Chr10 3512294 3512293 - RIRE2_LTR 11306 0.0003 (1/2914) 0 * Os_TE_721059 Os_TE_721045 Chr10 3500406 3500405 + ORSgTEMT00101674 340 0.0076 (22/2883) 0 * * Os_TE_721034 Chr10 3497165 3497164 - ORSgTEMT01701104 154 0.0045 (13/2915) 0 * Os_TE_721033 Os_TE_721033 Chr10 3497139 3497140 - ORSgTEMT00200018 144 0.0106 (31/2935) 0 * Os_TE_721034 Os_TE_721031 Chr10 3497067 3497066 + ORSgTEMT01400012 212 0.0014 (4/2959) 0 * * Os_TE_721023 Chr10 3495921 3495920 + OSTONOR1_LTR 6440 0.0241 (70/2905) 0 * * Os_TE_721022 Chr10 3495159 3495160 - SZ-22_LTR 4403 0.0004 (1/2540) 0 * * Os_TE_721021 Chr10 3494928 3494929 + GYPSY-A_LTR 8951 0.0124 (36/2913) 0 * Os_TE_721020 Os_TE_721020 Chr10 3494924 3494923 - GYPSY-A_LTR 8951 0.0140 (41/2921) 0 * Os_TE_721021 Os_TE_720989 Chr10 3490301 3490300 - ORSgTEMT01701104 154 0.0017 (5/2982) 0 * * Os_TE_720949 Chr10 3478278 3478277 + NDNA1TNA_OS 334 0.0068 (20/2949) 0 * * Os_TE_720934 Chr10 3471001 3471002 - NDNA1TNA_OS 334 0.0118 (35/2971) 0 * Os_TE_720933 Os_TE_720933 Chr10 3470999 3470998 + NDNA1TNA_OS 334 0.0124 (37/2976) 0 * Os_TE_720934 Os_TE_720924 Chr10 3466305 3466306 + RIRE2_LTR 11306 0.2429 (725/2985) 0 * Os_TE_720923 Os_TE_720923 Chr10 3466301 3466300 - RIRE2_LTR 11306 0.2368 (703/2969) 0 * Os_TE_720924 Os_TE_720916 Chr10 3464332 3464333 - MIDWAY 985 0.0027 (8/2946) 0 * * Os_TE_720888 Chr10 3446748 3446747 - MDR2 6967 0.0269 (59/2194) 0 * * Os_TE_720887 Chr10 3446524 3446525 + MDR2 6967 0.0210 (63/2993) 0 * * Os_TE_720886 Chr10 3444752 3444753 + ORSiTERTOOT00034 791 0.0003 (1/2973) 0 * Os_TE_720885 Os_TE_720885 Chr10 3444748 3444747 - SZ-22_LTR 4403 0.0003 (1/2983) 0 * Os_TE_720886 Os_TE_720882 Chr10 3441012 3441013 - BAJIELTR 4500 0.2785 (816/2930) 0 * Os_TE_720881 Os_TE_720881 Chr10 3441008 3441007 + BAJIELTR 4500 0.2781 (816/2934) 0 * Os_TE_720882 Os_TE_720874 Chr10 3439563 3439564 + SEVERIN-2 1952 0.4421 (1310/2963) 0 * * Os_TE_720868 Chr10 3436288 3436289 - CACTA-P 1150 0.0007 (2/2949) 0 * * Os_TE_720866 Chr10 3435115 3435116 - CRATA 4786 0.0003 (1/2949) 0 * * Os_TE_720849 Chr10 3430590 3430589 - SC-3_LTR 5748 0.0004 (1/2243) 0 * * Os_TE_720846 Chr10 3426774 3426775 + ORSiTERTOOT00296 5553 0.0003 (1/2974) 0 * Os_TE_720845 Os_TE_720845 Chr10 3426770 3426769 - SC-3_LTR 5748 0.0003 (1/2977) 0 * Os_TE_720846 Os_TE_720836 Chr10 3422193 3422194 - SC-3_LTR 5748 0.0044 (13/2986) 0 * * Os_TE_720798 Chr10 3407737 3407738 + ORSgTETNOOT00908 242 0.0007 (2/2993) 0 * Os_TE_720797 Os_TE_720797 Chr10 3407730 3407729 - ORSgTETNOOT00823 234 0.0007 (2/2992) 0 * Os_TE_720798 Os_TE_720794 Chr10 3406105 3406106 + CLOUD-7 495 0.0017 (5/2952) 0 * Os_TE_720793 Os_TE_720793 Chr10 3406099 3406098 + CLOUD-7 495 0.0017 (5/2954) 0 * Os_TE_720794 Os_TE_720792 Chr10 3405584 3405585 + ORSiTERTOOT00296 5553 0.0027 (8/2973) 0 * Os_TE_720791 Os_TE_720791 Chr10 3405580 3405579 - SC-3_LTR 5748 0.0027 (8/2975) 0 * Os_TE_720792 Os_TE_720787 Chr10 3400867 3400868 + OSTE20 496 0.3909 (1172/2998) 0 * * Os_TE_720785 Chr10 3400127 3400128 + RETRO2_LTR 12874 0.3891 (1162/2986) 0 * Os_TE_720784 Os_TE_720784 Chr10 3400124 3400123 - RETRO2_LTR 12874 0.3925 (1175/2994) 0 * Os_TE_720785 Os_TE_720777 Chr10 3397559 3398844 - MERMITE18E 1528 0.7347 (2182/2970) 1 Intact * Os_TE_720762 Chr10 3392000 3392001 + ORSgTETNOOT01930 140 0.0007 (2/2989) 0 * * Os_TE_720756 Chr10 3391607 3385088 - ORSiCMCM00100014 10855 0.7806 (2120/2716) 1 Intact * Os_TE_720754 Chr10 3384779 3384780 + MPING 430 0.0004 (1/2833) 0 * * Os_TE_720750 Chr10 3383253 3383022 - STOWAWAY44_OS 240 0.7300 (2060/2822) 1 Intact * Os_TE_720741 Chr10 3381340 3381341 - ENSPM4_OS 11610 0.0287 (66/2303) 0 * * Os_TE_720734 Chr10 3378751 3378750 - STOWAWAY48_OS 261 0.7649 (2222/2905) 0.96 * * Os_TE_720732 Chr10 3376733 3376732 - ORSgTEMT00901345 248 0.2862 (853/2980) 0 * Os_TE_720731 Os_TE_720731 Chr10 3376731 3376732 - ORSgTEMT00900741 219 0.2823 (837/2965) 0 * Os_TE_720732 Os_TE_720729 Chr10 3375500 3375499 - DS-RICE4N 715 0.2841 (844/2971) 0 * * Os_TE_720728 Chr10 3375413 3375414 - GYPSY1-LTR_OS 8900 0.0007 (2/2947) 0 * * Os_TE_720718 Chr10 3372998 3361026 + TRUNCATOR 2918 0.4469 (842/1884) 1 Intact * Os_TE_720619 Chr10 3341597 3341596 + TYPEU4 402 0.3060 (750/2451) 0 * * Os_TE_720205 Chr10 3174495 3177472 - TRUNCATOR2_LTR 2904 0.6197 (1841/2971) 1 Intact * Os_TE_720095 Chr10 3142465 3142466 - TRUNCATOR2_LTR 2904 0.0288 (66/2291) 0 * Os_TE_720094 Os_TE_720094 Chr10 3142461 3142460 + ORSiTERTOOT00028 8600 0.0208 (62/2979) 0 * Os_TE_720095 Os_TE_720085 Chr10 3139945 3139944 + ORSgTEMT00101674 340 0.2370 (685/2890) 0 * Os_TE_720084 Os_TE_720084 Chr10 3139944 3139945 + NDNA1TNA_OS 334 0.2599 (770/2963) 0 * Os_TE_720085 Os_TE_720078 Chr10 3138564 3138563 + COPIA2-LTR_OS 6433 0.0013 (4/2979) 0 * * Os_TE_720070 Chr10 3136084 3136085 + RIRE2_LTR 11306 0.0086 (24/2804) 0 * Os_TE_720069 Os_TE_720069 Chr10 3136080 3136079 - RIRE2_LTR 11306 0.0085 (24/2823) 0 * Os_TE_720070 Os_TE_720067 Chr10 3135479 3135478 - SZ-25LTR 330 0.0109 (31/2848) 0 * * Os_TE_720066 Chr10 3134823 3134824 + RETRO2_LTR 12874 0.0084 (24/2851) 0 * Os_TE_720065 Os_TE_720065 Chr10 3134819 3134818 - SZLTR 1249 0.0086 (24/2784) 0 * Os_TE_720066 Os_TE_720063 Chr10 3134254 3134255 - RIRE2_LTR 11306 0.0007 (2/2850) 0 * * Os_TE_720042 Chr10 3128899 3128898 + TRUNCATOR 2918 0.0158 (40/2539) 0 * * Os_TE_720001 Chr10 3114898 3114640 - STOWAWAY34_OS 256 0.7805 (1614/2068) 1 Intact Os_TE_719999 Os_TE_719999 Chr10 3114634 3114898 + STOWAWAY34_OS 256 0.8279 (2424/2928) 1 Intact Os_TE_720001 Os_TE_719987 Chr10 3103773 3103774 + CLOUD-7 495 0.0013 (2/1580) 0 * * Os_TE_719981 Chr10 3103253 3103254 + GYPSY1-LTR_OS 8900 0.2369 (652/2752) 0 * * Os_TE_719966 Chr10 3095150 3095149 - MERMITE 1401 0.2700 (739/2737) 0 * * Os_TE_719964 Chr10 3094356 3094357 + ORSgTETNOOT01778 120 0.0013 (2/1540) 0 * * Os_TE_719963 Chr10 3094337 3094220 + ORSgTETNOOT01778 120 0.5198 (1500/2886) 1 Intact * Os_TE_719962 Chr10 3094217 3094337 + ORSgTEMT00500201 140 0.4966 (1387/2793) 1 Intact * Os_TE_719959 Chr10 3092639 3092640 + TRUNCATOR 2918 0.1847 (544/2946) 0 * * Os_TE_719953 Chr10 3090278 3090277 - ORSgTEMT01000004 1456 0.4489 (1291/2876) 0 * * Os_TE_719951 Chr10 3090035 3090036 + TRUNCATOR 2918 0.0894 (174/1947) 0 * * Os_TE_719853 Chr10 3060477 3060476 + ENSPM5_OS 9581 0.0003 (1/2992) 0 * * Os_TE_719852 Chr10 3060019 3060020 + ORSiCMCM00100019 2717 0.0973 (291/2990) 0 * Os_TE_719851 Os_TE_719851 Chr10 3060015 3060014 - ORSiTERT00200141 11375 0.0989 (294/2972) 0 * Os_TE_719852 Os_TE_719849 Chr10 3059490 3059491 - TRUNCATOR2_LTR 2904 0.0118 (30/2536) 0 * * Os_TE_719792 Chr10 3044846 3044845 - COPIA1-LTR_OS 9292 0.0081 (24/2967) 0 * * Os_TE_719791 Chr10 3044818 3044817 + TRUNCATOR 2918 0.1461 (341/2334) 0 * * Os_TE_719789 Chr10 3044590 3044591 + RIRE2_LTR 11306 0.0009 (2/2345) 0 * Os_TE_719788 Os_TE_719788 Chr10 3044586 3044585 - RIRE2_LTR 11306 0.0009 (2/2345) 0 * Os_TE_719789 Os_TE_719784 Chr10 3043371 3043552 + LTR10_OS 202 0.2879 (860/2987) 1 Intact * Os_TE_719783 Chr10 3043242 3043243 - SZ-5LTR 1223 0.6959 (1970/2831) 0 * Os_TE_719782 Os_TE_719782 Chr10 3043240 3043239 + SZ-5LTR 1223 0.7143 (2140/2996) 0 * Os_TE_719783 Os_TE_719764 Chr10 3037833 3037832 + ORSgTEMT00900210 205 0.7148 (2133/2984) 0 * Os_TE_719763 Os_TE_719763 Chr10 3037820 3037821 + ORSgTEMT00900042 247 0.7124 (2115/2969) 0 * Os_TE_719764 Os_TE_719758 Chr10 3036094 3036095 + JOUZHENA 607 0.0074 (22/2968) 0 * * Os_TE_719756 Chr10 3035925 3035926 - RIRE2_LTR 11306 0.0087 (25/2879) 0 * * Os_TE_719755 Chr10 3035467 3035466 - ENSPM4_OS 11610 0.0060 (18/2978) 0 * * Os_TE_719746 Chr10 3033316 3033315 - TRUNCATOR2_LTR 2904 0.0122 (34/2785) 0 * * Os_TE_719736 Chr10 3029836 3029835 + ORSgTEMT01700600 151 0.0077 (23/2985) 0 * Os_TE_719735 Os_TE_719735 Chr10 3029833 3029834 + ORSgTEMT01701478 178 0.0080 (24/2987) 0 * Os_TE_719736 Os_TE_719726 Chr10 3024651 3024652 + RIREX_LTR 8828 0.0050 (15/2985) 0 * Os_TE_719725 Os_TE_719725 Chr10 3024647 3024646 - RIREX_LTR 8828 0.0060 (18/2991) 0 * Os_TE_719726 Os_TE_719723 Chr10 3024173 3024172 - RETROSAT5_LTR 13878 0.0007 (2/2875) 0 * * Os_TE_719717 Chr10 3019709 3019710 + OSTE9 421 0.0003 (1/2882) 0 * * Os_TE_719704 Chr10 3014455 3014454 - SINE9_OS 293 0.1445 (406/2809) 0 * * Os_TE_719689 Chr10 3010916 3010917 + SZ-50_LTR 11691 0.5454 (1604/2941) 0 * Os_TE_719688 Os_TE_719688 Chr10 3010912 3010911 - SZ-50_LTR 11691 0.5608 (1606/2864) 0 * Os_TE_719689 Os_TE_719677 Chr10 3005678 3005679 + SPMLIKE 10989 0.0147 (43/2925) 0 * Os_TE_719676 Os_TE_719676 Chr10 3005676 3005675 - ORSgTETN00200001 10994 0.0150 (44/2937) 0 * Os_TE_719677 Os_TE_719671 Chr10 3004571 3002757 + COPIA3-LTR_OS 5061 0.8344 (2494/2989) 1 Intact Os_TE_719667 Os_TE_719667 Chr10 3002757 3004571 - COPIA3-LTR_OS 5061 0.8346 (2492/2986) 1 Intact Os_TE_719671 Os_TE_719658 Chr10 2998396 2998938 + XIKE 594 0.4148 (1237/2982) 1 Intact * Os_TE_719657 Chr10 2998281 2998282 - MERMITEJ 1498 0.0003 (1/2986) 0 * Os_TE_719656 Os_TE_719656 Chr10 2998275 2998274 + MERMITED 1572 0.0003 (1/2987) 0 * Os_TE_719657 Os_TE_719652 Chr10 2994409 2994408 + MERMITEH 1307 0.0007 (2/2972) 0 * * Os_TE_719650 Chr10 2994142 2994143 - MPING 430 0.0037 (11/2972) 0 * Os_TE_719649 Os_TE_719649 Chr10 2994140 2994139 + MPING 430 0.0039 (11/2830) 0 * Os_TE_719650 Os_TE_719648 Chr10 2994034 2994033 + DS-RICE3N 525 0.5782 (1675/2897) 0 * * Os_TE_719644 Chr10 2992818 2993893 - EnSpm-N2_OS 1282 0.4152 (1239/2984) 1 Intact * Os_TE_719643 Chr10 2991936 2991935 - STOWAWAY9_OS 235 0.5606 (1572/2804) 0 * * Os_TE_719632 Chr10 2986334 2986335 - MERMITE 1401 0.0017 (5/2978) 0 * * Os_TE_719606 Chr10 2977106 2977107 + MuDR2_OS 6770 0.0193 (56/2904) 0 * Os_TE_719605 Os_TE_719605 Chr10 2977097 2977096 - MuDR2_OS 6770 0.0213 (62/2910) 0 * Os_TE_719606 Os_TE_719595 Chr10 2975112 2975113 - SZ-40LTR 2465 0.0020 (5/2448) 0 * Os_TE_719594 Os_TE_719594 Chr10 2975108 2975107 + GYPSY-A_LTR 8951 0.0021 (5/2433) 0 * Os_TE_719595 Os_TE_719582 Chr10 2968428 2968429 - ORSgTEMT03000007 372 0.5938 (1773/2986) 0 * Os_TE_719581 Os_TE_719581 Chr10 2968420 2968419 + ORSgTEMT03000039 377 0.5934 (1769/2981) 0 * Os_TE_719582 Os_TE_719519 Chr10 2927704 2927560 + STOWAWAY47_OS 148 0.4231 (1241/2933) 1 Intact * Os_TE_719515 Chr10 2926505 2926504 - SC-3_LTR 5748 0.0003 (1/2990) 0 * * Os_TE_719514 Chr10 2926330 2926331 - SC-8_LTR 4951 0.0003 (1/2968) 0 * Os_TE_719513 Os_TE_719513 Chr10 2926326 2926325 + SC-8_LTR 4951 0.0003 (1/2930) 0 * Os_TE_719514 Os_TE_719509 Chr10 2924885 2924746 + ORSgTEMT00500201 140 0.4215 (1248/2961) 1 Intact Os_TE_719506 Os_TE_719506 Chr10 2924739 2924882 + ORSgTEMT00502327 143 0.4051 (1182/2918) 1 Intact Os_TE_719509 Os_TE_719503 Chr10 2923444 2923206 + ORSgTEMT01602181 239 0.4171 (1247/2990) 1 Intact Os_TE_719501 Os_TE_719501 Chr10 2923206 2923444 - ORSgTEMT01601432 239 0.5419 (1235/2279) 1 Intact Os_TE_719503 Os_TE_719499 Chr10 2921805 2921804 - ORSgTEMT02900061 318 0.5988 (1791/2991) 0 * Os_TE_719498 Os_TE_719498 Chr10 2921802 2921803 - ORSgTEMT02900061 318 0.5947 (1768/2973) 0 * Os_TE_719499 Os_TE_719483 Chr10 2917781 2917780 + ORSgTEMT01602119 229 0.2590 (736/2842) 0 * * Os_TE_719482 Chr10 2917778 2917779 + ORSgTEMT01602119 229 0.2701 (780/2888) 0 * Os_TE_719481 Os_TE_719481 Chr10 2917774 2917773 + ORSgTEMT01601426 233 0.2557 (724/2831) 0 * Os_TE_719482 Os_TE_719478 Chr10 2917547 2917546 + OLO24 345 0.8160 (1778/2179) 0 * * Os_TE_719475 Chr10 2917306 2917534 - ORSgTEMT01000003 232 0.1427 (420/2944) 1 Intact * Os_TE_719469 Chr10 2915202 2915203 - STOWAWAY51_OS 246 0.0003 (1/2947) -1 * * Os_TE_719461 Chr10 2911794 2911795 - NDNA1TNA_OS 334 0.5875 (1648/2805) 0 * * Os_TE_719457 Chr10 2909144 2909145 - EnSpm-15_OS 8871 0.2797 (832/2975) 0 * Os_TE_719456 Os_TE_719456 Chr10 2909139 2909138 + EnSpm-15_OS 8871 0.6544 (799/1221) 0 * Os_TE_719457 Os_TE_719455 Chr10 2909085 2909086 + OSTONOR1_LTR 6440 0.0094 (12/1281) 0 * Os_TE_719454 Os_TE_719454 Chr10 2909081 2909080 - ORSiTERT00100062 5674 0.0047 (14/2978) 0 * Os_TE_719455 Os_TE_719449 Chr10 2907540 2907541 + ORSiCMCM00100019 2717 0.0085 (11/1294) 0 * * Os_TE_719437 Chr10 2899595 2899594 + ORSgTEMT01602626 237 0.5867 (1726/2942) 0 * Os_TE_719436 Os_TE_719436 Chr10 2899592 2899593 - ORSgTEMT01602413 239 0.5921 (1764/2979) 0 * Os_TE_719437 Os_TE_719433 Chr10 2897674 2897675 - ORSiTERT00100062 5674 0.0043 (13/2990) 0 * Os_TE_719432 Os_TE_719432 Chr10 2897670 2897669 + OSTONOR1_LTR 6440 0.0043 (13/2989) 0 * Os_TE_719433 Os_TE_719427 Chr10 2896716 2895981 + BAJIELTR 4500 0.7962 (1262/1585) 1 Solo_LTR Os_TE_719425 Os_TE_719425 Chr10 2895982 2896727 - BAJIELTR 4500 0.5373 (1275/2373) 1 Solo_LTR Os_TE_719427 Os_TE_719423 Chr10 2895261 2895262 + ORSiTERTOOT00361 5627 0.0309 (88/2846) 0 * Os_TE_719422 Os_TE_719422 Chr10 2895257 2895256 - ORSiTERTOOT00361 5627 0.0309 (91/2949) 0 * Os_TE_719423 Os_TE_719417 Chr10 2892722 2892947 - ORSgTEMT01602413 239 0.2432 (570/2344) 1 Intact * Os_TE_719414 Chr10 2892223 2892224 - SUSU 279 0.0017 (5/2962) 0 * Os_TE_719413 Os_TE_719413 Chr10 2892221 2892220 + ORSgTEMT05000092 279 0.0019 (5/2632) 0 * Os_TE_719414 Os_TE_719410 Chr10 2891395 2891394 - DNAUN1_OS 408 0.0046 (13/2819) 0 * * Os_TE_719408 Chr10 2890431 2890432 + ORSgTEMT00600376 329 0.0078 (23/2966) 0 * Os_TE_719407 Os_TE_719407 Chr10 2890426 2890425 + ORSgTEMT00600272 361 0.0067 (20/2967) 0 * Os_TE_719408 Os_TE_719405 Chr10 2890340 2890341 - RETRO1_LTR 8314 0.0119 (34/2859) 0 * * Os_TE_719400 Chr10 2887256 2886892 - ORSgTEMT01800102 409 0.4232 (1256/2968) 1 Intact * Os_TE_719396 Chr10 2885143 2883277 - MERMITED 1572 0.4454 (1284/2883) 1 Intact Os_TE_719394 Os_TE_719394 Chr10 2883272 2885140 - MERMITED 1572 0.4300 (1275/2965) 1 Intact Os_TE_719396 Os_TE_719388 Chr10 2872219 2872220 - MPING 430 0.0003 (1/2971) 0 * Os_TE_719387 Os_TE_719387 Chr10 2872217 2872216 + MPING 430 0.0003 (1/2966) 0 * Os_TE_719388 Os_TE_719385 Chr10 2871163 2871164 - MIDWAY 985 0.0003 (1/2998) 0 * * Os_TE_719382 Chr10 2870088 2870089 - SZ-62LTR 3649 0.0007 (2/2997) 0 * Os_TE_719381 Os_TE_719381 Chr10 2870084 2870083 + SZ-62LTR 3649 0.0003 (1/2983) 0 * Os_TE_719382 Os_TE_719366 Chr10 2866377 2865043 - CACTA-H 1152 0.1461 (431/2951) 1 Intact Os_TE_719363 Os_TE_719363 Chr10 2865043 2866377 + CACTA-H 1152 0.1484 (440/2965) 1 Intact Os_TE_719366 Os_TE_719359 Chr10 2861928 2861929 - INDITTO 263 0.0047 (14/2956) 0 * * Os_TE_719347 Chr10 2858447 2858448 - ORSgTEMT01600639 228 0.0116 (34/2939) 0 * * Os_TE_719344 Chr10 2857784 2857785 - ORSgTEMT02400179 221 0.0003 (1/2956) 0 * Os_TE_719343 Os_TE_719343 Chr10 2857783 2857782 - TYPEM 227 0.0003 (1/2950) 0 * Os_TE_719344 Os_TE_719293 Chr10 2847821 2847822 + MuDR2_OS 6770 0.0090 (27/2985) 0 * Os_TE_719292 Os_TE_719292 Chr10 2847812 2847811 - MuDR2_OS 6770 0.0080 (24/2984) 0 * Os_TE_719293 Os_TE_719276 Chr10 2836958 2836959 - RPO_OS 1983 0.0003 (1/2924) 0 * * Os_TE_719256 Chr10 2833022 2833023 - RETROSAT2LTR 12796 0.0003 (1/2978) 0 * * Os_TE_719240 Chr10 2827591 2827590 - YOUREN 286 0.0153 (45/2941) 0 * * Os_TE_719229 Chr10 2825057 2825056 - OsSN3 183 0.0140 (42/2994) 0 * * Os_TE_719228 Chr10 2824815 2824814 - ORSgTEMT01400006 213 0.0154 (46/2986) 0 * Os_TE_719227 Os_TE_719227 Chr10 2824812 2824813 + ORSgTEMT01400031 216 0.0114 (34/2974) 0 * Os_TE_719228 Os_TE_719196 Chr10 2813040 2813039 - ORSgTEMT01601493 303 0.0007 (2/2984) 0 * Os_TE_719195 Os_TE_719195 Chr10 2813037 2813038 + ORSgTEMT01602181 239 0.0007 (2/2984) 0 * Os_TE_719196 Os_TE_719194 Chr10 2812838 2812837 + ORSgTEMT01601934 207 0.0087 (26/2983) 0 * Os_TE_719193 Os_TE_719193 Chr10 2812835 2812836 - ORSgTEMT01601493 303 0.0097 (29/2982) 0 * Os_TE_719194 Os_TE_719191 Chr10 2812448 2812449 - RIRE2_LTR 11306 0.0010 (3/2957) 0 * Os_TE_719190 Os_TE_719190 Chr10 2812444 2812443 - ORSgTERT00201216 11284 0.0010 (3/2962) 0 * Os_TE_719191 Os_TE_719186 Chr10 2811403 2811402 - RIRE2_LTR 11306 0.0007 (2/2926) 0 * * Os_TE_719183 Chr10 2810781 2810780 - ORSgTEMT01601208 238 0.0003 (1/2958) 0 * * Os_TE_719173 Chr10 2808786 2808787 + SZ-9LTR 965 0.0027 (8/2986) 0 * * Os_TE_719157 Chr10 2803312 2803313 + SPMLIKE 10989 0.0017 (4/2294) 0 * Os_TE_719156 Os_TE_719156 Chr10 2803310 2803309 - ORSgTETN00200001 10994 0.0031 (7/2295) 0 * Os_TE_719157 Os_TE_719153 Chr10 2802157 2802156 + ORSiTERTOOT00226 792 0.0010 (3/2988) 0 * * Os_TE_719146 Chr10 2801070 2801069 - COPIA2-LTR_OS 6433 0.0020 (6/2990) 0 * * Os_TE_719142 Chr10 2800254 2799992 - INDITTO 263 0.0454 (135/2974) 1 Intact Os_TE_719139 Os_TE_719139 Chr10 2799992 2800254 + INDITTO 263 0.0469 (140/2983) 1 Intact Os_TE_719142 Os_TE_719137 Chr10 2799439 2799440 - ORSgTETN00200001 10994 0.0088 (26/2968) 0 * * Os_TE_719135 Chr10 2797825 2797826 - RIREX_LTR 8828 0.0003 (1/2904) 0 * Os_TE_719134 Os_TE_719134 Chr10 2797821 2797820 + RIREX_LTR 8828 0.0003 (1/2894) 0 * Os_TE_719135 Os_TE_719133 Chr10 2797665 2797664 - ORSgTEMT01700507 154 0.0010 (3/2858) 0 * * Os_TE_719124 Chr10 2796770 2796769 - ORSiTETNOOT00134 607 0.0078 (23/2962) 0 * * Os_TE_719120 Chr10 2794026 2794027 - COPI2_LTR 4733 0.0003 (1/2986) 0 * Os_TE_719119 Os_TE_719119 Chr10 2794022 2794021 + COPI2_LTR 4733 0.0003 (1/2988) 0 * Os_TE_719120 Os_TE_719114 Chr10 2791681 2791682 + RETROSAT2LTR 12796 0.0061 (18/2973) 0 * Os_TE_719113 Os_TE_719113 Chr10 2791679 2791678 - RETROSAT2LTR 12796 0.0067 (20/2964) 0 * Os_TE_719114 Os_TE_719111 Chr10 2790768 2791030 + INDITTO 263 0.1560 (442/2834) 1 Intact * Os_TE_719108 Chr10 2789891 2789892 + SETARIA2 1142 0.0120 (34/2840) 0 * Os_TE_719107 Os_TE_719107 Chr10 2789887 2789886 + SETARIA2 1142 0.0355 (103/2901) 0 * Os_TE_719108 Os_TE_719088 Chr10 2783143 2783144 + OSTE33 1012 0.0007 (1/1484) -1 * * Os_TE_719082 Chr10 2780869 2780870 - RETROSAT3_LTR 11537 0.0040 (12/2990) 0 * Os_TE_719081 Os_TE_719081 Chr10 2780865 2780864 + RETROSAT3_LTR 11537 0.0040 (12/2980) 0 * Os_TE_719082 Os_TE_719039 Chr10 2760362 2760361 - OSLINE1-2 7128 0.0007 (1/1376) 0 * * Os_TE_719004 Chr10 2742372 2742373 + RETROSOR2_LTR 11699 0.0007 (2/2927) 0 * Os_TE_719003 Os_TE_719003 Chr10 2742368 2742367 - RETROSOR2_LTR 11699 0.0007 (2/2928) 0 * Os_TE_719004 Os_TE_718965 Chr10 2732539 2732538 - ORSgTEMT00700002 381 0.0003 (1/2952) 0 * * Os_TE_718927 Chr10 2715828 2715827 + KRISPIE 956 0.0007 (2/2979) 0 * * Os_TE_718926 Chr10 2715610 2714568 + CACTA-I 1124 0.0212 (63/2978) 1 Intact Os_TE_718925 Os_TE_718925 Chr10 2714568 2715610 - CACTA-M 1129 0.0228 (68/2982) 1 Intact Os_TE_718926 Os_TE_718924 Chr10 2714486 2714487 + ORSgTEMT01601934 207 0.0003 (1/2936) 0 * Os_TE_718923 Os_TE_718923 Chr10 2714485 2714484 - ORSgTEMT01601432 239 0.0003 (1/2985) 0 * Os_TE_718924 Os_TE_718921 Chr10 2714457 2714456 + SPMLIKE 10989 0.0419 (125/2981) 0 * * Os_TE_718903 Chr10 2708020 2708021 + CACTA-I 1124 0.0004 (1/2706) 0 * * Os_TE_718884 Chr10 2698466 2698465 + ORSgTETNOOT00908 242 0.0003 (1/2992) 0 * * Os_TE_718882 Chr10 2698180 2698181 - HARB-1_OS 5166 0.0096 (26/2717) 0 * Os_TE_718881 Os_TE_718881 Chr10 2698178 2698177 + HARB-1_OS 5166 0.0092 (26/2816) 0 * Os_TE_718882 Os_TE_718880 Chr10 2698157 2698158 - TYPEM 227 0.0014 (4/2910) 0 * Os_TE_718879 Os_TE_718879 Chr10 2698156 2698155 - ORSgTEMT02400179 221 0.0015 (4/2757) 0 * Os_TE_718880 Os_TE_718831 Chr10 2681809 2676450 - SZ-62LTR 3649 0.0162 (46/2841) 1 Intact Os_TE_718830 Os_TE_718830 Chr10 2676450 2681809 + SZ-62LTR 3649 0.0165 (47/2848) 1 Intact Os_TE_718831 Os_TE_718806 Chr10 2670382 2670383 + SPMLIKE 10989 0.0376 (108/2870) 0 * Os_TE_718805 Os_TE_718805 Chr10 2670380 2670379 - SPMLIKE 10989 0.0380 (109/2871) 0 * Os_TE_718806 Os_TE_718802 Chr10 2669566 2669567 + TREP220 109 0.0011 (3/2813) 0 * * Os_TE_718801 Chr10 2669526 2669527 - RETROSAT2LTR 12796 0.2870 (825/2875) 0 * Os_TE_718800 Os_TE_718800 Chr10 2669524 2669523 + RETROSAT2LTR 12796 0.2799 (799/2855) 0 * Os_TE_718801 Os_TE_718799 Chr10 2669344 2669345 + SEVERIN-2 1952 0.0014 (4/2871) 0 * * Os_TE_718794 Chr10 2664464 2664465 + ORSgTEMT04600032 273 0.0195 (52/2662) 0 * * Os_TE_718785 Chr10 2659220 2659221 - STOWAWAY43_OS 233 0.0011 (3/2856) 0 * * Os_TE_718736 Chr10 2623009 2627092 + TRUNCATOR2_LTR 2904 0.0158 (45/2842) 1 Intact * Os_TE_718682 Chr10 2593533 2593844 + ORSgTEMT01900027 302 0.0865 (177/2047) 1 Intact * Os_TE_718659 Chr10 2580790 2576790 - RETROSAT4_LTR 13504 0.1347 (383/2844) 1 Solo_LTR Os_TE_718657 Os_TE_718657 Chr10 2576790 2580790 + RETROSAT4_LTR 13504 0.1345 (395/2937) 1 Solo_LTR Os_TE_718659 Os_TE_718653 Chr10 2575769 2575768 + ORSgTEMT01602029 239 0.0331 (98/2959) 0 * Os_TE_718652 Os_TE_718652 Chr10 2575766 2575767 - ORSgTEMT01601696 238 0.0452 (135/2985) 0 * Os_TE_718653 Os_TE_718642 Chr10 2570636 2570635 + ORSiTERTOOT00296 5553 0.0003 (1/2989) 0 * * Os_TE_718641 Chr10 2569812 2569811 + ORSgTERT00201086 9728 0.0003 (1/2985) 0 * * Os_TE_718640 Chr10 2569732 2569733 - SC-8_LTR 4951 0.0003 (1/2982) 0 * Os_TE_718639 Os_TE_718639 Chr10 2569728 2569727 + SC-8_LTR 4951 0.0003 (1/2986) 0 * Os_TE_718640 Os_TE_718635 Chr10 2568140 2568139 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * * Os_TE_718628 Chr10 2565009 2565010 - ORSgTEMT06100010 269 0.5938 (1775/2989) 0 * Os_TE_718627 Os_TE_718627 Chr10 2565007 2565006 + ORSgTEMT06100010 269 0.5947 (1777/2988) 0 * Os_TE_718628 Os_TE_718618 Chr10 2558100 2558099 + ORSgTEMT00600124 361 0.0017 (5/2925) 0 * * Os_TE_718568 Chr10 2545976 2545977 - EnSpm-N2_OS 1282 0.0007 (2/2898) 0 * * Os_TE_718554 Chr10 2542210 2542209 - ORSgTERT00201216 11284 0.0009 (2/2314) 0 * * Os_TE_718552 Chr10 2542150 2532451 - ORSgTETN00200001 10994 0.0770 (176/2286) 1 Intact * Os_TE_718532 Chr10 2531160 2531161 + ORSiTERTOOT00329 5144 0.8199 (1785/2177) 0 * * Os_TE_718528 Chr10 2528923 2528924 - STOWAWAY1_OS 149 0.0023 (7/2991) 0 * * Os_TE_718525 Chr10 2526922 2526923 + TOS17LTR 138 0.0010 (3/2978) 0 * * Os_TE_718523 Chr10 2526499 2526500 + SEVERIN-2 1952 0.0010 (3/2992) 0 * Os_TE_718522 Os_TE_718522 Chr10 2526494 2526493 - SEVERIN-2 1952 0.0010 (3/2992) 0 * Os_TE_718523 Os_TE_718520 Chr10 2526069 2526068 + SPMLIKE 10989 0.0003 (1/2991) 0 * * Os_TE_718519 Chr10 2525690 2525691 - OSTE1 801 0.0024 (7/2895) 0 * * Os_TE_718514 Chr10 2523481 2523480 - ORSgTETN00200001 10994 0.0034 (10/2985) 0 * * Os_TE_718512 Chr10 2522563 2522564 - SZ-55_LTR 10318 0.0003 (1/2948) 0 * Os_TE_718511 Os_TE_718511 Chr10 2522559 2522558 + SZ-55_LTR 10318 0.0003 (1/2950) 0 * Os_TE_718512 Os_TE_718483 Chr10 2512611 2512610 + SPMLIKE 10989 0.0131 (39/2967) 0 * * Os_TE_718480 Chr10 2511033 2511032 + RETROSAT2LTR 12796 0.8151 (2429/2980) 0 * * Os_TE_718477 Chr10 2510602 2510603 + SETARIA 1402 0.0003 (1/2977) 0 * * Os_TE_718472 Chr10 2509345 2509346 + ORSgTETNOOT00908 242 0.0003 (1/2985) 0 * * Os_TE_718407 Chr10 2478760 2478759 + ORSgTEMT00502171 134 0.0017 (5/2994) 0 * Os_TE_718406 Os_TE_718406 Chr10 2478755 2478756 + ORSgTETNOOT01930 140 0.0017 (5/2989) 0 * Os_TE_718407 Os_TE_718401 Chr10 2476979 2476980 - TREP215 239 0.0014 (4/2941) 0 * * Os_TE_718388 Chr10 2474531 2474532 + RETRO2A_LTR 12895 0.0017 (2/1166) 0 * Os_TE_718387 Os_TE_718387 Chr10 2474527 2474526 - RETRO1_LTR 8314 0.0017 (2/1184) 0 * Os_TE_718388 Os_TE_718386 Chr10 2473559 2473560 - RIREX_LTR 8828 0.0011 (3/2794) 0 * Os_TE_718385 Os_TE_718385 Chr10 2473555 2473554 + RIREX_LTR 8828 0.0010 (3/2979) 0 * Os_TE_718386 Os_TE_718379 Chr10 2472084 2472083 - GYPSY-A_LTR 8951 0.0034 (10/2982) 0 * * Os_TE_718378 Chr10 2471848 2471847 + SC-1_LTR 6888 0.0347 (104/2998) 0 * * Os_TE_718354 Chr10 2460956 2512838 + SPMLIKE 10989 0.1428 (423/2963) 1 Intact * Os_TE_718336 Chr10 2456046 2456047 - RETROSAT2LTRA 3112 0.0010 (3/2953) 0 * * Os_TE_718333 Chr10 2453994 2453993 + ORSgTETNOOT01834 251 0.0003 (1/2969) 0 * Os_TE_718332 Os_TE_718332 Chr10 2453992 2453993 + ORSgTETNOOT01834 251 0.0003 (1/2977) 0 * Os_TE_718333 Os_TE_718330 Chr10 2453842 2453841 + ORSgTEMT00101341 314 0.0599 (171/2853) 0 * * Os_TE_718319 Chr10 2449672 2449673 + ORSgTEMT00901042 216 0.0007 (1/1506) 0 * * Os_TE_718316 Chr10 2447970 2447969 - RIRE2_LTR 11306 0.0167 (50/2993) 0 * * Os_TE_718315 Chr10 2447342 2447343 - COPIA2-LTR_OS 6433 0.0167 (50/2991) 0 * Os_TE_718314 Os_TE_718314 Chr10 2447338 2447337 + COPIA2-LTR_OS 6433 0.0167 (50/2987) 0 * Os_TE_718315 Os_TE_718308 Chr10 2445177 2445176 + SZ-40LTR 2465 0.0007 (2/2884) 0 * * Os_TE_718281 Chr10 2434480 2434479 + ENSPM4_OS 11610 0.0011 (3/2832) 0 * * Os_TE_718279 Chr10 2434263 2434264 - RIREX_LTR 8828 0.0712 (209/2935) 0 * Os_TE_718278 Os_TE_718278 Chr10 2434259 2434258 + RIREX_LTR 8828 0.0702 (206/2933) 0 * Os_TE_718279 Os_TE_718268 Chr10 2428337 2428338 - SZ-48LTR 3632 0.5400 (1601/2965) 0 * Os_TE_718267 Os_TE_718267 Chr10 2428333 2428332 + SZ-48LTR 3632 0.5414 (1607/2968) 0 * Os_TE_718268 Os_TE_718255 Chr10 2415274 2415273 - ENSPM4_OS 11610 0.0007 (2/2960) 0 * * Os_TE_718245 Chr10 2407975 2407976 - ORSgTETN00200001 10994 0.0007 (2/2949) 0 * * Os_TE_718242 Chr10 2407140 2407141 + MUDRN1_OS 764 0.0007 (2/2985) 0 * Os_TE_718241 Os_TE_718241 Chr10 2407132 2407131 - MUDRN1_OS 764 0.0007 (2/2979) 0 * Os_TE_718242 Os_TE_718231 Chr10 2400465 2400466 - RETROSAT2LTRA 3112 0.0007 (2/2996) 0 * Os_TE_718230 Os_TE_718230 Chr10 2400461 2400460 - RETROSAT3_LTR 11537 0.0007 (2/2990) 0 * Os_TE_718231 Os_TE_718229 Chr10 2400139 2396417 + RETROSAT4_LTR 13504 0.7230 (2140/2960) 1 Solo_LTR Os_TE_718225 Os_TE_718225 Chr10 2396418 2400139 - RETROSAT4_LTR 13504 0.7222 (2142/2966) 1 Solo_LTR Os_TE_718229 Os_TE_718223 Chr10 2395954 2395953 - SC-4_LTR 5218 0.0010 (3/2967) 0 * * Os_TE_718219 Chr10 2392620 2392621 + COPI2_LTR 4733 0.0003 (1/2979) 0 * Os_TE_718218 Os_TE_718218 Chr10 2392616 2392615 - COPI2_LTR 4733 0.0003 (1/2981) 0 * Os_TE_718219 Os_TE_718203 Chr10 2385580 2385581 + OSTE20 496 0.0003 (1/2981) 0 * Os_TE_718202 Os_TE_718202 Chr10 2385576 2385575 + OSTE20 496 0.0003 (1/2985) 0 * Os_TE_718203 Os_TE_718189 Chr10 2378591 2378592 - ORSgTETNOOT02565 240 0.7920 (2342/2957) 0 * * Os_TE_718182 Chr10 2374356 2374357 + RIRE3A_LTR 10580 0.0010 (3/2959) 0 * * Os_TE_718180 Chr10 2374346 2374345 + TRUNCATOR 2918 0.0034 (10/2964) 0 * * Os_TE_718176 Chr10 2373654 2373655 + SZ-48LTR 3632 0.0021 (6/2888) 0 * Os_TE_718175 Os_TE_718175 Chr10 2373650 2373649 - SZ-48LTR 3632 0.0021 (6/2886) 0 * Os_TE_718176 Os_TE_718167 Chr10 2371421 2371422 - CENTRE 280 0.3385 (964/2848) 0 * * Os_TE_718159 Chr10 2368019 2368018 + ORSiTERT00100071 4657 0.0010 (3/2884) 0 * * Os_TE_718151 Chr10 2361697 2361696 - ORSgTEMT02400246 177 0.0007 (2/2812) 0 * * Os_TE_718140 Chr10 2360406 2360407 - SEVERIN-2 1952 0.0025 (7/2795) 0 * * Os_TE_718138 Chr10 2360370 2360369 - CACTA-G1 797 0.2138 (605/2830) 0 * * Os_TE_718133 Chr10 2358784 2358785 + DS-RICE3N 525 0.0088 (25/2832) 0 * * Os_TE_718127 Chr10 2357726 2357725 + HELITRON2_OS 15167 0.0476 (120/2519) -1 * Os_TE_718126 Os_TE_718126 Chr10 2357725 2357726 - HELITRON2_OS 15167 0.0436 (111/2543) 0 * Os_TE_718127 Os_TE_718125 Chr10 2357190 2357191 - COPIA2-LTR_OS 6433 0.0004 (1/2423) 0 * Os_TE_718124 Os_TE_718124 Chr10 2357186 2357185 + COPIA2-LTR_OS 6433 0.0004 (1/2416) 0 * Os_TE_718125 Os_TE_718117 Chr10 2354701 2354702 - MuDR3_OS 8604 0.0004 (1/2472) 0 * * Os_TE_718114 Chr10 2354560 2354559 - CPSC2_LTR 5202 0.0006 (1/1631) -1 * * Os_TE_718113 Chr10 2353269 2353270 + SPMLIKE 10989 0.0037 (9/2417) 0 * Os_TE_718112 Os_TE_718112 Chr10 2353267 2353266 - ORSgTETN00200001 10994 0.0028 (8/2866) 0 * Os_TE_718113 Os_TE_718106 Chr10 2346966 2349752 + SEVERIN-2 1952 0.1362 (380/2791) 1 Intact * Os_TE_718088 Chr10 2335655 2335656 - SC-4_LTR 5218 0.0778 (233/2993) 0 * Os_TE_718087 Os_TE_718087 Chr10 2335651 2335650 + SC-4_LTR 5218 0.0776 (232/2991) 0 * Os_TE_718088 Os_TE_718028 Chr10 2318014 2318015 - RIREX_LTR 8828 0.0038 (11/2893) 0 * * Os_TE_718027 Chr10 2317111 2317112 + TWIFBIG 3567 0.0101 (30/2978) 0 * * Os_TE_718024 Chr10 2316210 2316211 - OSTONOR1_LTR 6440 0.0003 (1/2934) 0 * * Os_TE_718015 Chr10 2314789 2314788 + TRUNCATOR 2918 0.0325 (97/2986) 0 * Os_TE_718014 Os_TE_718014 Chr10 2314788 2314789 - TRUNCATOR 2918 0.0305 (91/2980) 0 * Os_TE_718015 Os_TE_717951 Chr10 2295910 2295911 - INDITTO 263 0.0017 (3/1754) 0 * Os_TE_717950 Os_TE_717950 Chr10 2295908 2295907 + INDITTO 263 0.0011 (3/2769) 0 * Os_TE_717951 Os_TE_717945 Chr10 2293182 2293183 + EXPLORER 210 0.4333 (1274/2940) 0 * * Os_TE_717920 Chr10 2285221 2285788 + TNR12 528 0.3884 (1123/2891) 1 Intact * Os_TE_717907 Chr10 2282016 2282017 - RETROSAT2LTR 12796 0.0822 (95/1156) 0 * * Os_TE_717906 Chr10 2282002 2283097 + ORSgTETN00200005 1121 0.3834 (1142/2979) 1 Intact * Os_TE_717902 Chr10 2279548 2279549 + TWIFB1 3737 0.0010 (3/2948) 0 * * Os_TE_717901 Chr10 2279462 2279463 - ORSgTEMT03800066 376 0.6354 (1870/2943) 0 * * Os_TE_717900 Chr10 2278606 2278607 - RETROSAT2LTR 12796 0.0033 (10/2989) 0 * * Os_TE_717890 Chr10 2275451 2276142 - OSTE17 734 0.3677 (1081/2940) 1 Intact * Os_TE_717888 Chr10 2275292 2274979 + ORSgTEMT02900114 314 0.3654 (1072/2934) 1 Intact * Os_TE_717852 Chr10 2258599 2258600 - RETROSAT2LTR 12796 0.0017 (5/2890) 0 * * Os_TE_717849 Chr10 2257161 2257162 - TYPEU 362 0.0093 (27/2896) 0 * * Os_TE_717840 Chr10 2254811 2254812 + TREP219 104 0.6665 (1313/1970) -1 * * Os_TE_717839 Chr10 2254763 2254762 - Mudr5_OS 5952 0.0194 (32/1651) -1 * * Os_TE_717838 Chr10 2254653 2254407 + ORSgTETNOOT01286 235 0.3004 (833/2773) 1 Intact Os_TE_717835 Os_TE_717835 Chr10 2254400 2254653 + ORSgTETNOOT01583 259 0.3425 (979/2858) 1 Intact Os_TE_717838 Os_TE_717826 Chr10 2249590 2249589 - RIRE2_LTR 11306 0.0013 (4/2985) 0 * * Os_TE_717823 Chr10 2248617 2248618 + ORSgTEMT00101400 332 0.0019 (2/1081) 0 * * Os_TE_717812 Chr10 2243687 2243686 + ORSgTEMT01900027 302 0.0029 (3/1045) 0 * * Os_TE_717803 Chr10 2242722 2242982 - STOWAWAY41_OS 264 0.3378 (961/2845) 1 Intact * Os_TE_717796 Chr10 2238945 2239158 - TESS 244 0.8682 (856/986) 1 Intact * Os_TE_717774 Chr10 2231420 2231419 - TNR2A 152 0.0099 (11/1112) 0 * * Os_TE_717759 Chr10 2217431 2217432 - SZ-62LTR 3649 0.0075 (6/801) 0 * * Os_TE_717755 Chr10 2212361 2212362 + INDITTO 263 0.1182 (132/1117) 0 * * Os_TE_717747 Chr10 2208736 2208735 - NDNA1TNA_OS 334 0.0009 (1/1106) 0 * * Os_TE_717745 Chr10 2208127 2208128 + SZ-67LTR 1540 0.0340 (33/972) 0 * * Os_TE_717733 Chr10 2201255 2201254 + STOWAWAY51_OS 246 0.0081 (15/1858) 0 * Os_TE_717732 Os_TE_717732 Chr10 2201249 2201250 + ORSgTEMT01601591 242 0.0044 (13/2984) 0 * Os_TE_717733 Os_TE_717730 Chr10 2201089 2201088 + STOWAWAY51_OS 246 0.0027 (8/2975) 0 * * Os_TE_717715 Chr10 2195683 2195684 - ORSiTETNOOT00200 3563 0.0095 (27/2846) 0 * Os_TE_717714 Os_TE_717714 Chr10 2195676 2195675 + TWIF 586 0.0035 (10/2853) 0 * Os_TE_717715 Os_TE_717713 Chr10 2195460 2195459 + ORSgTEMT02000059 196 0.0045 (10/2247) 0 * * Os_TE_717712 Chr10 2195168 2195169 - ORSgTEMT00501447 126 0.0023 (7/2987) 0 * * Os_TE_717705 Chr10 2194502 2194503 - RETROSAT2LTR 12796 0.0021 (6/2919) 0 * * Os_TE_717701 Chr10 2191948 2191949 - ORSiTETNOOT00134 607 0.0050 (15/2992) 0 * * Os_TE_717697 Chr10 2191879 2191878 - ORSiTETNOOT00147 3619 0.0010 (3/2991) 0 * * Os_TE_717696 Chr10 2191207 2191208 - COPIA2-LTR_OS 6433 0.0004 (1/2757) 0 * * Os_TE_717693 Chr10 2187589 2187590 - SC-3_LTR 5748 0.0859 (257/2991) 0 * * Os_TE_717683 Chr10 2182029 2182028 - STOWAWAY1_OS 149 0.0020 (6/2987) 0 * * Os_TE_717668 Chr10 2177116 2171882 - SZ-62LTR 3649 0.2564 (753/2937) 1 Intact * Os_TE_717661 Chr10 2171149 2171150 - OSTE20 496 0.0396 (117/2953) 0 * Os_TE_717660 Os_TE_717660 Chr10 2171145 2171144 - OSTE20 496 0.0097 (28/2883) 0 * Os_TE_717661 Os_TE_717639 Chr10 2161627 2161626 + ORSgTETNOOT01219 231 0.0020 (6/2973) 0 * * Os_TE_717626 Chr10 2157001 2157000 + ORSgTEMT01700012 149 0.0004 (1/2746) 0 * * Os_TE_717624 Chr10 2156013 2156014 - NDNA1TNA_OS 334 0.0020 (6/2954) 0 * Os_TE_717623 Os_TE_717623 Chr10 2156011 2156010 + NDNA1TNA_OS 334 0.0020 (6/2971) 0 * Os_TE_717624 Os_TE_717622 Chr10 2155997 2155996 + RIREX_LTR 8828 0.0054 (16/2963) 0 * Os_TE_717621 Os_TE_717621 Chr10 2155982 2155983 - RIREX_LTR 8828 0.0054 (16/2978) 0 * Os_TE_717622 Os_TE_717617 Chr10 2153778 2153777 + HELITRON2_OS 15167 0.1337 (393/2939) 0 * * Os_TE_717614 Chr10 2152803 2152802 + RIRE2_LTR 11306 0.0003 (1/2984) 0 * * Os_TE_717601 Chr10 2146460 2146459 + ORSgTEMT00101674 340 0.0881 (261/2962) 0 * * Os_TE_717597 Chr10 2146216 2146217 + NDNA1TNA_OS 334 0.5251 (1517/2889) 0 * * Os_TE_717571 Chr10 2137380 2133688 + SZ-67LTR 1540 0.5652 (1687/2985) 1 Intact Os_TE_717566 Os_TE_717566 Chr10 2133688 2137380 - SZ-67LTR 1540 0.5699 (1708/2997) 1 Intact Os_TE_717571 Os_TE_717561 Chr10 2130971 2130803 - F804 170 0.4901 (1453/2965) 1 Intact Os_TE_717560 Os_TE_717560 Chr10 2130803 2130971 + F804 170 0.4877 (1452/2977) 1 Intact Os_TE_717561 Os_TE_717559 Chr10 2130768 2130769 + COPI2_LTR 4733 0.0003 (1/2989) 0 * Os_TE_717558 Os_TE_717558 Chr10 2130764 2130763 - COPI2_LTR 4733 0.0004 (1/2770) 0 * Os_TE_717559 Os_TE_717557 Chr10 2130697 2130698 + COPI2_LTR 4733 0.0007 (2/2976) 0 * Os_TE_717556 Os_TE_717556 Chr10 2130693 2130692 - COPI2_LTR 4733 0.0007 (2/2968) 0 * Os_TE_717557 Os_TE_717555 Chr10 2130631 2130632 + SEVERIN-2 1952 0.0017 (5/2978) 0 * * Os_TE_717552 Chr10 2128678 2128330 - ORSgTEMT00100291 345 0.8602 (2578/2997) 1 Intact * Os_TE_717519 Chr10 2119200 2122596 - TRUNCATOR2_LTR 2904 0.3327 (996/2994) 1 Intact * Os_TE_717495 Chr10 2111901 2111902 + ORSgTEMT00500476 150 0.4113 (1225/2978) 0 * * Os_TE_717494 Chr10 2111567 2111566 - OSLINE1-4 4779 0.4081 (1217/2982) 0 * * Os_TE_717493 Chr10 2111172 2111173 + COPI2_LTR 4733 0.0901 (259/2874) 0 * Os_TE_717492 Os_TE_717492 Chr10 2111168 2111167 - COPI2_LTR 4733 0.0872 (261/2994) 0 * Os_TE_717493 Os_TE_717491 Chr10 2111073 2111074 + WUWU 113 0.0007 (2/2990) 0 * Os_TE_717490 Os_TE_717490 Chr10 2111068 2111067 - OSTE19 162 0.0003 (1/2987) 0 * Os_TE_717491 Os_TE_717481 Chr10 2103000 2102886 + SZ-58LTR 114 0.5057 (931/1841) 1 Intact * Os_TE_717479 Chr10 2102592 2102706 - SZ-58LTR 114 0.3071 (917/2986) 1 Intact * Os_TE_717478 Chr10 2101811 2101812 + COPI2_LTR 4733 0.0003 (1/2977) 0 * Os_TE_717477 Os_TE_717477 Chr10 2101807 2101806 - COPI2_LTR 4733 0.0003 (1/2976) 0 * Os_TE_717478 Os_TE_717455 Chr10 2092300 2094364 - SZ-63_LTR 9602 0.5791 (926/1599) 1 Solo_LTR * Os_TE_717450 Chr10 2090334 2090335 - STOWAWAY13_OS 251 0.0380 (113/2971) 0 * * Os_TE_717446 Chr10 2088219 2087998 - ORSgTEMT01602467 227 0.3257 (939/2883) 1 Intact * Os_TE_717444 Chr10 2087219 2087220 + QINNIU 528 0.0637 (188/2952) 0 * Os_TE_717443 Os_TE_717443 Chr10 2087212 2087211 - HATOS1 3488 0.0630 (187/2969) 0 * Os_TE_717444 Os_TE_717442 Chr10 2086133 2086132 - RIRE2_LTR 11306 0.0054 (16/2977) 0 * * Os_TE_717441 Chr10 2085511 2085512 - COPIA2-LTR_OS 6433 0.0003 (1/2981) 0 * * Os_TE_717434 Chr10 2083520 2083521 - ORSgTETN00200001 10994 0.0071 (21/2970) 0 * * Os_TE_717414 Chr10 2076259 2076258 - STOWAWAY1_OS 149 0.0039 (4/1029) 0 * * Os_TE_717405 Chr10 2074806 2074805 - ORSgTEMT01700029 143 0.0008 (1/1274) 0 * Os_TE_717404 Os_TE_717404 Chr10 2074803 2074804 + ORSgTEMT01701591 154 0.5782 (1716/2968) 0 * Os_TE_717405 Os_TE_717389 Chr10 2070959 2070960 + RIREX_LTR 8828 0.0650 (191/2938) 0 * Os_TE_717388 Os_TE_717388 Chr10 2070955 2070954 - RIREX_LTR 8828 0.0658 (197/2992) 0 * Os_TE_717389 Os_TE_717387 Chr10 2070479 2070480 - AMYLTP 383 0.0003 (1/2985) 0 * * Os_TE_717376 Chr10 2067978 2067740 + ORSgTEMT01602181 239 0.3439 (923/2684) 1 Intact Os_TE_717375 Os_TE_717375 Chr10 2067740 2067978 + ORSgTEMT01602181 239 0.3357 (954/2842) 1 Intact Os_TE_717376 Os_TE_717370 Chr10 2066638 2066639 + ORSgTETNOOT00908 242 0.0133 (38/2855) 0 * * Os_TE_717364 Chr10 2061758 2061757 + SETARIA2 1142 0.0022 (6/2693) 0 * * Os_TE_717351 Chr10 2054865 2054866 - ORSgTEMT00500675 140 0.0015 (3/1952) 0 * Os_TE_717350 Os_TE_717350 Chr10 2054863 2054862 - ORSgTEMT00501447 126 0.0020 (3/1519) 0 * Os_TE_717351 Os_TE_717349 Chr10 2054650 2054649 + DEBOAT 110 0.2887 (435/1507) 0 * Os_TE_717348 Os_TE_717348 Chr10 2054643 2054644 - DEBOAT 110 0.2213 (422/1907) 0 * Os_TE_717349 Os_TE_717347 Chr10 2054471 2054472 + COPIA2-LTR_OS 6433 0.0020 (3/1532) 0 * * Os_TE_717346 Chr10 2054356 2054355 - ORSgTEMT01602413 239 0.2269 (439/1935) 0 * * Os_TE_717341 Chr10 2053440 2053441 - SZ-35LTR 3853 0.0013 (3/2385) 0 * Os_TE_717340 Os_TE_717340 Chr10 2053436 2053435 + RETROSAT4_LTR 13504 0.0008 (2/2448) 0 * Os_TE_717341 Os_TE_717331 Chr10 2051359 2051360 + SZ-67LTR 1540 0.0008 (2/2611) 0 * * Os_TE_717291 Chr10 2024556 2024555 - SZ-25LTR 330 0.0008 (2/2487) 0 * * Os_TE_717289 Chr10 2022227 2022226 - STOWAWAY51_OS 246 0.0008 (2/2476) 0 * Os_TE_717288 Os_TE_717288 Chr10 2022221 2022222 + STOWAWAY51_OS 246 0.0008 (2/2464) 0 * Os_TE_717289 Os_TE_717283 Chr10 2020880 2020879 + TRUNCATOR 2918 0.0004 (1/2469) 0 * * Os_TE_717252 Chr10 2006744 2006743 - STOWAWAY51_OS 246 0.0004 (1/2433) 0 * Os_TE_717251 Os_TE_717251 Chr10 2006738 2006739 + STOWAWAY51_OS 246 0.0004 (1/2418) 0 * Os_TE_717252 Os_TE_717230 Chr10 2003013 2003014 + RIRE2_LTR 11306 0.0161 (40/2483) 0 * Os_TE_717229 Os_TE_717229 Chr10 2003009 2003008 - RIRE2_LTR 11306 0.0165 (41/2486) 0 * Os_TE_717230 Os_TE_717146 Chr10 1963154 1963155 + ORSiTERTOOT00416 7094 0.0057 (14/2460) 0 * * Os_TE_717138 Chr10 1958067 1958068 - ORSgTEMT01600750 238 0.0009 (2/2340) 0 * * Os_TE_717108 Chr10 1950734 1950735 + COPI2_LTR 4733 0.0008 (2/2500) 0 * Os_TE_717107 Os_TE_717107 Chr10 1950730 1950729 - COPI2_LTR 4733 0.0008 (2/2471) 0 * Os_TE_717108 Os_TE_717106 Chr10 1950497 1950498 - SC-3_LTR 5748 0.0295 (73/2477) 0 * * Os_TE_717104 Chr10 1949566 1949567 + SC-4_LTR 5218 0.1463 (363/2482) 0 * Os_TE_717103 Os_TE_717103 Chr10 1949562 1949561 - SC-4_LTR 5218 0.1436 (355/2473) 0 * Os_TE_717104 Os_TE_717078 Chr10 1939419 1939420 - TRUNCATOR 2918 0.0022 (5/2266) 0 * * Os_TE_717058 Chr10 1933004 1933005 - SZ-22_LTR 4403 0.0004 (1/2479) 0 * * Os_TE_717043 Chr10 1919400 1919401 + MERMITE18C 1473 0.0115 (28/2440) -1 * * Os_TE_717042 Chr10 1919346 1914948 - LINE-6_OS 4886 0.8881 (2397/2699) 1 Intact * Os_TE_717038 Chr10 1917629 1917628 + SZ-55_LTR 10318 0.0597 (148/2479) 0 * * Os_TE_717035 Chr10 1916761 1916760 + COPIA2-LTR_OS 6433 0.0137 (34/2473) 0 * * Os_TE_717032 Chr10 1915541 1915542 + COPIA2-LTR_OS 6433 0.5593 (1359/2430) 0 * * Os_TE_717030 Chr10 1914936 1914937 + OSTONOR1_LTR 6440 0.5665 (1388/2450) 0 * Os_TE_717029 Os_TE_717029 Chr10 1914932 1914931 - OSTONOR1_LTR 6440 0.5224 (1412/2703) 0 * Os_TE_717030 Os_TE_717025 Chr10 1913836 1913837 + TRUNCATOR 2918 0.0017 (4/2331) 0 * * Os_TE_717024 Chr10 1912941 1912940 - COWARD 200 0.1500 (431/2873) 0 * * Os_TE_717020 Chr10 1912161 1910870 + MERMITEB 1610 0.8549 (2434/2847) 1 Intact * Os_TE_717010 Chr10 1907636 1907637 + DASIA-2 1198 0.0599 (151/2521) 0 * Os_TE_717009 Os_TE_717009 Chr10 1907628 1907627 + DASIA-2 1198 0.0601 (154/2561) 0 * Os_TE_717010 Os_TE_717004 Chr10 1905033 1905034 - SC-3_LTR 5748 0.0012 (3/2506) 0 * Os_TE_717003 Os_TE_717003 Chr10 1905029 1905028 + ORSiTERTOOT00296 5553 0.0012 (3/2511) 0 * Os_TE_717004 Os_TE_716996 Chr10 1903385 1903108 + ORSgTEMT05000092 279 0.8602 (2498/2904) 1 Intact Os_TE_716992 Os_TE_716992 Chr10 1903108 1903385 - SUSU 279 0.8602 (2498/2904) 1 Intact Os_TE_716996 Os_TE_716958 Chr10 1894164 1894163 + ORSgTEMT00100531 325 0.0117 (34/2913) 0 * * Os_TE_716956 Chr10 1893636 1893635 - OSR3_LTR 5201 0.0160 (48/2998) 0 * * Os_TE_716947 Chr10 1889819 1889820 + SPMLIKE 10989 0.0003 (1/2984) 0 * * Os_TE_716933 Chr10 1876386 1876387 - F524 291 0.1458 (433/2970) 0 * * Os_TE_716931 Chr10 1875192 1875193 - TYPEH 309 0.0230 (69/2997) 0 * * Os_TE_716927 Chr10 1872226 1872225 + SZ-55_LTR 10318 0.0820 (246/2999) 0 * * Os_TE_716925 Chr10 1872150 1872151 - TOS17LTR 138 0.0177 (53/2994) 0 * * Os_TE_716910 Chr10 1859402 1859403 + ORSiCMCM00100019 2717 0.0010 (3/2947) 0 * Os_TE_716909 Os_TE_716909 Chr10 1859398 1859397 - TRUNCATOR2_LTR 2904 0.0010 (3/2957) 0 * Os_TE_716910 Os_TE_716907 Chr10 1858790 1858789 - TRUNCATOR 2918 0.4728 (1366/2889) 0 * Os_TE_716906 Os_TE_716906 Chr10 1858789 1858790 + TRUNCATOR 2918 0.4628 (1373/2967) 0 * Os_TE_716907 Os_TE_716905 Chr10 1858762 1858761 - RETROSAT2LTR 12796 0.0060 (16/2685) 0 * * Os_TE_716879 Chr10 1845438 1845439 - ORSgTERT00201216 11284 0.0093 (27/2910) 0 * Os_TE_716878 Os_TE_716878 Chr10 1845434 1845433 - RIRE2_LTR 11306 0.0089 (26/2920) 0 * Os_TE_716879 Os_TE_716865 Chr10 1843618 1843617 - RIRE3A_LTR 10580 0.0100 (29/2910) 0 * * Os_TE_716864 Chr10 1843461 1843460 + EnSpm-N1_OS 4256 0.0179 (52/2898) 0 * * Os_TE_716862 Chr10 1843185 1843184 + SPMLIKE 10989 0.0325 (91/2799) 0 * * Os_TE_716861 Chr10 1843181 1843182 + SEVERIN-2 1952 0.0727 (204/2806) 0 * Os_TE_716860 Os_TE_716860 Chr10 1843176 1843175 - SEVERIN-2 1952 0.0874 (239/2734) 0 * Os_TE_716861 Os_TE_716854 Chr10 1839960 1839961 - SZ-36LTR 5825 0.0010 (3/2920) 0 * Os_TE_716853 Os_TE_716853 Chr10 1839956 1839955 + SZ-36LTR 5825 0.0010 (3/2994) 0 * Os_TE_716854 Os_TE_716852 Chr10 1838955 1838956 - COPIA2-LTR_OS 6433 0.0004 (1/2782) 0 * * Os_TE_716840 Chr10 1837457 1837458 - ORSgTEMT02400179 221 0.0003 (1/2927) 0 * Os_TE_716839 Os_TE_716839 Chr10 1837456 1837455 - TYPEM 227 0.0003 (1/2940) 0 * Os_TE_716840 Os_TE_716838 Chr10 1836948 1836949 + SPMLIKE 10989 0.0020 (6/2953) 0 * Os_TE_716837 Os_TE_716837 Chr10 1836946 1836945 - ORSgTETN00200001 10994 0.0020 (6/2953) 0 * Os_TE_716838 Os_TE_716836 Chr10 1836907 1836908 - MuDR4_OS 7610 0.0236 (69/2925) 0 * Os_TE_716835 Os_TE_716835 Chr10 1836901 1836900 - MuDR4_OS 7610 0.0241 (71/2940) 0 * Os_TE_716836 Os_TE_716834 Chr10 1836118 1836117 + TRUNCATOR 2918 0.0027 (7/2596) 0 * * Os_TE_716827 Chr10 1831890 1831891 + RIREX_LTR 8828 0.0020 (6/2999) 0 * Os_TE_716826 Os_TE_716826 Chr10 1831886 1831885 - RIREX_LTR 8828 0.0020 (6/2999) 0 * Os_TE_716827 Os_TE_716825 Chr10 1831698 1831699 - RETRO1_LTR 8314 0.0090 (27/2996) 0 * Os_TE_716824 Os_TE_716824 Chr10 1831694 1831693 + RETRO2A_LTR 12895 0.0093 (28/2995) 0 * Os_TE_716825 Os_TE_716823 Chr10 1831241 1831240 - MIDWAY 985 0.0023 (7/2993) 0 * * Os_TE_716820 Chr10 1828500 1828097 - TYPEU2 382 0.8620 (2555/2964) 1 Intact * Os_TE_716788 Chr10 1820650 1820651 + RIRE2_LTR 11306 0.0020 (6/2990) 0 * * Os_TE_716785 Chr10 1820178 1820177 - ORSgTEMT01601834 234 0.0026 (7/2720) 0 * * Os_TE_716784 Chr10 1819510 1819511 - NDNA1TNA_OS 334 0.0020 (6/2988) 0 * Os_TE_716783 Os_TE_716783 Chr10 1819508 1819507 + NDNA1TNA_OS 334 0.0020 (6/2992) 0 * Os_TE_716784 Os_TE_716769 Chr10 1817890 1817891 - RIRE2_LTR 11306 0.0020 (6/2987) 0 * Os_TE_716768 Os_TE_716768 Chr10 1817886 1817885 - ORSgTERT00201216 11284 0.0020 (6/2979) 0 * Os_TE_716769 Os_TE_716752 Chr10 1812353 1812352 + TRUNCATOR2_LTR 2904 0.0091 (27/2976) 0 * * Os_TE_716722 Chr10 1799457 1799456 - ORSgTEMT02000040 196 0.0010 (3/2951) 0 * * Os_TE_716720 Chr10 1799383 1799382 + RETROSAT2LTRA 3112 0.0503 (147/2920) 0 * * Os_TE_716713 Chr10 1794567 1794568 + NDNA1TNA_OS 334 0.0017 (5/2911) 0 * Os_TE_716712 Os_TE_716712 Chr10 1794565 1794564 - NDNA1TNA_OS 334 0.0021 (5/2382) 0 * Os_TE_716713 Os_TE_716706 Chr10 1792155 1792154 - ORSgTERT00201216 11284 0.0507 (152/2999) 0 * * Os_TE_716686 Chr10 1790801 1790800 + TRUNCATOR2_LTR 2904 0.0019 (4/2052) 0 * * Os_TE_716670 Chr10 1785066 1785067 + OSTE33 1012 0.3352 (1001/2986) 0 * Os_TE_716669 Os_TE_716669 Chr10 1785057 1785056 - OSTE33 1012 0.3373 (1009/2991) 0 * Os_TE_716670 Os_TE_716635 Chr10 1778597 1778598 - NDNA1TNA_OS 334 0.3655 (1086/2971) 0 * * Os_TE_716621 Chr10 1771627 1771626 - SC-8_LTR 4951 0.0003 (1/2979) 0 * * Os_TE_716600 Chr10 1762868 1758150 + ORSiTERTOOT00020 2547 0.2997 (883/2946) 1 Intact Os_TE_716599 Os_TE_716599 Chr10 1758150 1762868 - OSCOPIA1_LTR 4754 0.3064 (909/2967) 1 Intact Os_TE_716600 Os_TE_716597 Chr10 1758067 1758068 - ORSgTEMT00600524 364 0.3218 (962/2989) 0 * Os_TE_716596 Os_TE_716596 Chr10 1758065 1758064 + ORSgTEMT00600272 361 0.3199 (956/2988) 0 * Os_TE_716597 Os_TE_716595 Chr10 1755354 1755353 + OLO24 345 0.0003 (1/2957) 0 * * Os_TE_716573 Chr10 1743581 1743582 - ORSgTEMT01602413 239 0.0381 (114/2991) 0 * Os_TE_716572 Os_TE_716572 Chr10 1743580 1743579 + ORSgTEMT01602004 234 0.0386 (115/2980) 0 * Os_TE_716573 Os_TE_716568 Chr10 1741808 1741807 - NDNA2TNA_OS 346 0.0196 (55/2806) 0 * * Os_TE_716559 Chr10 1740082 1740081 + ORSiTETNOOT00147 3619 0.0020 (6/2934) 0 * * Os_TE_716554 Chr10 1732578 1732579 + GYPSY-A_LTR 8951 0.0003 (1/2989) 0 * Os_TE_716553 Os_TE_716553 Chr10 1732574 1732573 - SZ-40LTR 2465 0.0003 (1/2987) 0 * Os_TE_716554 Os_TE_716551 Chr10 1731891 1731659 + STOWAWAY51_OS 246 0.8978 (2671/2975) 1 Intact * Os_TE_716540 Chr10 1726705 1726706 - RETROSAT5_LTR 13878 0.0018 (2/1133) 0 * * Os_TE_716538 Chr10 1726625 1726624 + TRUNCATOR 2918 0.0007 (1/1340) -1 * * Os_TE_716502 Chr10 1715238 1715239 - SZ-62LTR 3649 0.0053 (15/2825) 0 * * Os_TE_716459 Chr10 1700525 1700526 + SZ-54_LTR 5203 0.0007 (2/2996) 0 * * Os_TE_716447 Chr10 1697955 1697956 + NDNA1TNA_OS 334 0.0020 (6/2983) 0 * Os_TE_716446 Os_TE_716446 Chr10 1697953 1697952 - NDNA1TNA_OS 334 0.0020 (6/2976) 0 * Os_TE_716447 Os_TE_716407 Chr10 1685822 1685823 + STOWAWAY51_OS 246 0.4290 (1271/2963) 0 * * Os_TE_716406 Chr10 1685729 1685730 + MPING 430 0.0003 (1/2956) 0 * Os_TE_716405 Os_TE_716405 Chr10 1685727 1685726 - MPING 430 0.0003 (1/2978) 0 * Os_TE_716406 Os_TE_716404 Chr10 1685448 1685449 + RETRO2A_LTR 12895 0.0013 (4/2983) 0 * Os_TE_716403 Os_TE_716403 Chr10 1685444 1685443 - RETRO1_LTR 8314 0.0013 (4/2978) 0 * Os_TE_716404 Os_TE_716400 Chr10 1684623 1684624 - MPING 430 0.0003 (1/2863) 0 * * Os_TE_716392 Chr10 1684283 1684284 - COPIA2-LTR_OS 6433 0.0035 (9/2573) 0 * * Os_TE_716379 Chr10 1678843 1678844 + TYPEU4 402 0.0003 (1/2903) 0 * * Os_TE_716365 Chr10 1663462 1663463 + SEVERIN-2 1952 0.1175 (337/2868) 0 * * Os_TE_716353 Chr10 1661514 1661515 + TREP220 109 0.0038 (11/2896) 0 * * Os_TE_716351 Chr10 1660051 1660050 + ORSgTEMT01701591 154 0.0007 (2/2965) 0 * * Os_TE_716332 Chr10 1650517 1650518 - HATOS1 3488 0.0017 (5/2982) 0 * Os_TE_716331 Os_TE_716331 Chr10 1650510 1650509 + HATOS1 3488 0.0017 (5/2980) 0 * Os_TE_716332 Os_TE_716326 Chr10 1649466 1649465 - OSTE1 801 0.0018 (4/2270) 0 * * Os_TE_716320 Chr10 1647845 1648102 + STOWAWAY34_OS 256 0.8269 (2345/2836) 1 Intact * Os_TE_716319 Chr10 1646278 1646279 + TWIFB1 3737 0.0003 (1/2997) 0 * * Os_TE_716317 Chr10 1642748 1642749 - ORSiTERTOOT00308 5023 0.0017 (4/2322) 0 * * Os_TE_716315 Chr10 1642660 1642661 + SPMLIKE 10989 0.0010 (3/2979) 0 * Os_TE_716314 Os_TE_716314 Chr10 1642658 1642657 - ORSgTETN00200001 10994 0.0014 (3/2133) 0 * Os_TE_716315 Os_TE_716313 Chr10 1642534 1642533 - ORSgTEMT01601432 239 0.0020 (4/1957) 0 * Os_TE_716312 Os_TE_716312 Chr10 1642531 1642532 + ORSgTEMT01602181 239 0.0017 (4/2349) 0 * Os_TE_716313 Os_TE_716279 Chr10 1636840 1636839 - ORSiTETNOOT00134 607 0.0004 (1/2375) 0 * * Os_TE_716263 Chr10 1633657 1633656 + SC-8_LTR 4951 0.1904 (570/2993) 0 * * Os_TE_716261 Chr10 1632832 1632833 + COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_716260 Os_TE_716260 Chr10 1632828 1632827 - COPIA2-LTR_OS 6433 0.0003 (1/2984) 0 * Os_TE_716261 Os_TE_716228 Chr10 1625174 1625173 + RETRO2_LTR 12874 0.5957 (1479/2483) 0 * * Os_TE_716224 Chr10 1623116 1623115 + OLO24 345 0.1897 (568/2994) 0 * * Os_TE_716222 Chr10 1621962 1621961 - OSTONOR1_LTR 6440 0.0006 (1/1546) 0 * * Os_TE_716217 Chr10 1620108 1619826 + YOUREN 286 0.8832 (1353/1532) 1 Intact Os_TE_716215 Os_TE_716215 Chr10 1619823 1620105 + ORSgTEMT05200196 285 0.8818 (1358/1540) 1 Intact Os_TE_716217 Os_TE_716207 Chr10 1618791 1618508 + ID-4 284 0.8889 (1360/1530) 1 Intact * Os_TE_716204 Chr10 1618446 1618445 + STOWAWAY51_OS 246 0.0034 (5/1478) 0 * * Os_TE_716195 Chr10 1615768 1616006 - ORSgTEMT01601768 238 0.8812 (1305/1481) 1 Intact * Os_TE_716193 Chr10 1615396 1614859 + SINE03_OS 360 0.8656 (1456/1682) 1 Intact * Os_TE_716188 Chr10 1614678 1614677 + STOWAWAY51_OS 246 0.0007 (1/1529) 0 * * Os_TE_716175 Chr10 1609646 1609647 + SZ-62LTR 3649 0.0020 (3/1502) 0 * * Os_TE_716166 Chr10 1605847 1605848 - RIRE2_LTR 11306 0.0027 (4/1504) 0 * Os_TE_716165 Os_TE_716165 Chr10 1605843 1605842 - ORSgTERT00201216 11284 0.0026 (4/1511) 0 * Os_TE_716166 Os_TE_716155 Chr10 1602758 1602757 + ENSPM4_OS 11610 0.1252 (171/1366) 0 * * Os_TE_716146 Chr10 1600500 1600499 + STOWAWAY45_OS 266 0.0013 (2/1489) 0 * Os_TE_716145 Os_TE_716145 Chr10 1600499 1600500 - STOWAWAY32_OS 261 0.0013 (2/1508) 0 * Os_TE_716146 Os_TE_716144 Chr10 1600493 1600494 - RETRO2_LTR 12874 0.0026 (4/1520) 0 * Os_TE_716143 Os_TE_716143 Chr10 1600489 1600488 + RETRO2_LTR 12874 0.0027 (4/1505) 0 * Os_TE_716144 Os_TE_716139 Chr10 1597788 1597560 + ORSgTEMT01602119 229 0.8845 (1517/1715) 1 Intact * Os_TE_716132 Chr10 1596387 1596388 + RIREX_LTR 8828 0.0015 (1/684) -1 * * Os_TE_716091 Chr10 1582112 1582113 - ORSgTEMT05000027 289 0.0007 (1/1518) 0 * * Os_TE_716083 Chr10 1581051 1581050 - ORSiTERTOOT00273 5419 0.1160 (121/1043) 0 * * Os_TE_716081 Chr10 1580142 1580141 - ORSgTEMT02400064 212 0.3902 (576/1476) 0 * Os_TE_716080 Os_TE_716080 Chr10 1580140 1580141 - ORSgTEMT02400179 221 0.3853 (573/1487) 0 * Os_TE_716081 Os_TE_716079 Chr10 1580082 1580083 + STOWAWAY48_OS 261 0.0007 (1/1477) 0 * * Os_TE_716052 Chr10 1574695 1571015 + SZ-40LTR 2465 0.6132 (932/1520) 1 Intact Os_TE_716051 Os_TE_716051 Chr10 1571015 1574695 - SZ-40LTR 2465 0.6190 (949/1533) 1 Intact Os_TE_716052 Os_TE_716034 Chr10 1565730 1565731 + ORSgTETNOOT01583 259 0.4218 (1097/2601) 0 * * Os_TE_716029 Chr10 1561226 1561225 + MUDRN1_OS 764 0.0478 (117/2449) 0 * * Os_TE_716024 Chr10 1556760 1556761 - ORSgTEMT00600085 364 0.0095 (14/1475) 0 * Os_TE_716023 Os_TE_716023 Chr10 1556758 1556757 + ORSgTEMT00600502 360 0.0059 (14/2373) 0 * Os_TE_716024 Os_TE_716013 Chr10 1553576 1553577 - NDNA1TNA_OS 334 0.0017 (2/1154) 0 * * Os_TE_716012 Chr10 1553319 1553318 - LINE-6_OS 4886 0.5429 (1317/2426) 0 * * Os_TE_716001 Chr10 1550984 1550983 - TRUNCATOR2_LTR 2904 0.5483 (1356/2473) 0 * * Os_TE_715993 Chr10 1548646 1548647 - ORSgTEMT01602467 227 0.0008 (2/2637) 0 * * Os_TE_715984 Chr10 1544563 1544562 - GYPSY-B_LTR 7068 0.0016 (3/1894) 0 * * Os_TE_715981 Chr10 1544407 1543699 - STOWAWAY44_OS 240 0.8475 (1806/2131) 1 Intact Os_TE_715975 Os_TE_715975 Chr10 1543699 1544407 - STOWAWAY44_OS 240 0.6518 (1870/2869) 1 Intact Os_TE_715981 Os_TE_715974 Chr10 1543495 1543496 + CASGRANDA 465 0.0243 (72/2968) 0 * * Os_TE_715969 Chr10 1541425 1541426 - ORSgTEMT00600398 354 0.0003 (1/2962) 0 * * Os_TE_715968 Chr10 1540451 1540452 + COPI2_LTR 4733 0.0003 (1/2969) 0 * * Os_TE_715961 Chr10 1539026 1539237 + ORSgTEMT01601122 212 0.7930 (1935/2440) 1 Intact * Os_TE_715955 Chr10 1537353 1537352 - ORSgTEMT01701254 154 0.2509 (749/2985) 0 * * Os_TE_715952 Chr10 1537183 1537182 + ORSgTEMT00101341 314 0.0295 (67/2273) 0 * * Os_TE_715947 Chr10 1530431 1530432 + RIRE2_LTR 11306 0.0004 (1/2786) 0 * Os_TE_715946 Os_TE_715946 Chr10 1530427 1530426 - RIRE2_LTR 11306 0.0004 (1/2829) 0 * Os_TE_715947 Os_TE_715945 Chr10 1530408 1530407 + MERMITEB 1610 0.0122 (35/2876) 0 * * Os_TE_715943 Chr10 1529809 1529808 + ORSgTETNOOT01834 251 0.0003 (1/2927) 0 * * Os_TE_715931 Chr10 1526759 1526760 + ORSgTEMT01400031 216 0.0136 (40/2933) 0 * * Os_TE_715930 Chr10 1526402 1526403 - CACTA-H 1152 0.0014 (4/2770) 0 * Os_TE_715929 Os_TE_715929 Chr10 1526400 1526399 + CACTA-H 1152 0.0022 (6/2787) 0 * Os_TE_715930 Os_TE_715927 Chr10 1525484 1525485 + TREP220 109 0.3479 (1018/2926) 0 * * Os_TE_715924 Chr10 1524019 1524018 - GYPSY-A_LTR 8951 0.0005 (1/2213) 0 * * Os_TE_715921 Chr10 1522121 1522122 - ENSPM5_OS 9581 0.0010 (2/1987) 0 * Os_TE_715920 Os_TE_715920 Chr10 1522119 1522118 + ENSPM5_OS 9581 0.0010 (2/1985) 0 * Os_TE_715921 Os_TE_715912 Chr10 1517975 1517976 + COPIA2-LTR_OS 6433 0.0005 (1/1970) 0 * * Os_TE_715893 Chr10 1501286 1501287 + COWARD-3 221 0.0219 (65/2971) 0 * Os_TE_715892 Os_TE_715892 Chr10 1501284 1501283 - COWARD 200 0.0221 (66/2984) 0 * Os_TE_715893 Os_TE_715881 Chr10 1500617 1500618 - NDNA1TNA_OS 334 0.3097 (894/2887) 0 * * Os_TE_715873 Chr10 1496435 1496282 + STOWAWAY50_OS 174 0.7392 (1961/2653) 1 Intact Os_TE_715870 Os_TE_715870 Chr10 1496279 1496435 - ORSgTEMT01701882 154 0.6264 (1769/2824) 1 Intact Os_TE_715873 Os_TE_715864 Chr10 1494896 1494895 + BAJIELTR 4500 0.3557 (1044/2935) 0 * * Os_TE_715857 Chr10 1493127 1482149 + SPMLIKE 10989 0.0765 (229/2995) 1 Intact Os_TE_715851 Os_TE_715851 Chr10 1482149 1493063 - ORSgTETN00200001 10994 0.0737 (220/2987) 1 Intact Os_TE_715857 Os_TE_715848 Chr10 1479474 1479475 + TWIFB1 3737 0.0003 (1/2873) 0 * * Os_TE_715846 Chr10 1478980 1478981 - MERMITE18C 1473 0.0206 (61/2958) 0 * Os_TE_715845 Os_TE_715845 Chr10 1478976 1478975 + MERMITE-18 1263 0.0167 (49/2942) 0 * Os_TE_715846 Os_TE_715842 Chr10 1477523 1477524 + SEVERIN-2 1952 0.0027 (8/2916) 0 * * Os_TE_715836 Chr10 1474803 1474804 + SEVERIN-2 1952 0.0008 (2/2412) 0 * * Os_TE_715835 Chr10 1474449 1474448 - CACTA-J 1159 0.0013 (4/2988) 0 * * Os_TE_715834 Chr10 1474318 1474205 + SZ-58LTR 114 0.7960 (2372/2980) 1 Intact * Os_TE_715829 Chr10 1473875 1473988 - SZ-58LTR 114 0.7790 (2094/2688) 1 Intact * Os_TE_715825 Chr10 1472888 1472659 - ORSgTEMT01500003 239 0.7970 (2360/2961) 1 Intact * Os_TE_715818 Chr10 1472409 1472658 + ORSgTEMT00901844 250 0.7953 (2362/2970) 1 Intact * Os_TE_715815 Chr10 1472229 1472230 + SPMLIKE 10989 0.0137 (41/2992) 0 * Os_TE_715814 Os_TE_715814 Chr10 1472227 1472226 - ORSgTETN00200001 10994 0.0127 (38/2981) 0 * Os_TE_715815 Os_TE_715813 Chr10 1470850 1470851 + COPIA2-LTR_OS 6433 0.0151 (45/2990) 0 * Os_TE_715812 Os_TE_715812 Chr10 1470846 1470845 - COPIA2-LTR_OS 6433 0.0164 (49/2983) 0 * Os_TE_715813 Os_TE_715790 Chr10 1464367 1464368 - ORSgTEMT01600768 234 0.0141 (41/2915) 0 * * Os_TE_715786 Chr10 1463648 1463649 - SZ-55_LTR 10318 0.0232 (68/2930) 0 * Os_TE_715785 Os_TE_715785 Chr10 1463644 1463643 + SZ-55_LTR 10318 0.0236 (69/2929) 0 * Os_TE_715786 Os_TE_715782 Chr10 1462849 1462850 - RETROSAT4_LTR 13504 0.5796 (1729/2983) 0 * Os_TE_715781 Os_TE_715781 Chr10 1462845 1462844 + RETROSAT4_LTR 13504 0.5829 (1740/2985) 0 * Os_TE_715782 Os_TE_715780 Chr10 1462461 1462460 + TRUNCATOR 2918 0.0324 (69/2128) 0 * Os_TE_715779 Os_TE_715779 Chr10 1462460 1462461 - TRUNCATOR 2918 0.0320 (68/2128) 0 * Os_TE_715780 Os_TE_715772 Chr10 1460327 1460328 + OSTE33 1012 0.0229 (47/2055) 0 * Os_TE_715771 Os_TE_715771 Chr10 1460318 1460317 + OSTE33 1012 0.0277 (57/2056) 0 * Os_TE_715772 Os_TE_715763 Chr10 1459664 1459663 - RETRO2_LTR 12874 0.0298 (62/2084) 0 * * Os_TE_715761 Chr10 1459152 1459153 - RIRE2_LTR 11306 0.0042 (9/2130) 0 * * Os_TE_715749 Chr10 1454774 1454775 - RETRO2_LTR 12874 0.0033 (7/2109) 0 * Os_TE_715748 Os_TE_715748 Chr10 1454770 1454769 + RETRO2_LTR 12874 0.0033 (7/2112) 0 * Os_TE_715749 Os_TE_715747 Chr10 1454718 1454717 - COPI1_LTR 4721 0.0040 (8/1997) 0 * * Os_TE_715746 Chr10 1454664 1454665 - F770 284 0.0030 (6/1997) 0 * * Os_TE_715720 Chr10 1444323 1444322 - TRUNCATOR 2918 0.0231 (69/2986) 0 * * Os_TE_715702 Chr10 1440073 1440072 - ORSiTERT00200154 9386 0.0007 (2/2927) 0 * * Os_TE_715670 Chr10 1431147 1431148 - COPIA2-LTR_OS 6433 0.0469 (140/2983) 0 * * Os_TE_715655 Chr10 1430023 1429870 - ORSgTEMT01701037 155 0.5668 (1675/2955) 1 Intact Os_TE_715654 Os_TE_715654 Chr10 1429870 1430023 - ORSgTEMT01700507 154 0.5893 (1682/2854) 1 Intact Os_TE_715655 Os_TE_715652 Chr10 1429701 1429700 - ORSgTEMT01601432 239 0.4113 (1169/2842) 0 * Os_TE_715651 Os_TE_715651 Chr10 1429698 1429699 - ORSgTEMT01600902 239 0.4199 (1211/2884) 0 * Os_TE_715652 Os_TE_715626 Chr10 1421947 1421948 - TRUNCATOR 2918 0.2871 (801/2790) 0 * * Os_TE_715624 Chr10 1421768 1421767 + TRUNCATOR 2918 0.0028 (7/2541) 0 * Os_TE_715623 Os_TE_715623 Chr10 1421766 1421767 - TRUNCATOR 2918 0.0012 (3/2511) 0 * Os_TE_715624 Os_TE_715575 Chr10 1393933 1393934 + ORSiCMCM00100019 2717 0.0060 (16/2649) 0 * Os_TE_715574 Os_TE_715574 Chr10 1393929 1393928 - TRUNCATOR2_LTR 2904 0.0064 (17/2638) 0 * Os_TE_715575 Os_TE_715572 Chr10 1393594 1393593 - INDITTO 263 0.2636 (713/2705) 0 * * Os_TE_715539 Chr10 1381186 1381187 - AMYLTP 383 0.1065 (253/2375) 0 * Os_TE_715538 Os_TE_715538 Chr10 1381178 1381177 + AMYLTP 383 0.1203 (263/2186) 0 * Os_TE_715539 Os_TE_715534 Chr10 1381088 1381089 - MPING 430 0.0030 (7/2317) 0 * Os_TE_715533 Os_TE_715533 Chr10 1381086 1381085 + MPING 430 0.0025 (6/2443) 0 * Os_TE_715534 Os_TE_715521 Chr10 1380289 1380288 + CACTA-B 1103 0.0954 (283/2965) 0 * * Os_TE_715495 Chr10 1366111 1366112 - COPI2_LTR 4733 0.0003 (1/2997) 0 * * Os_TE_715490 Chr10 1361288 1361287 - MIDWAY 985 0.0334 (97/2902) 0 * * Os_TE_715489 Chr10 1361171 1361172 + ORSgTEMT01701171 147 0.5344 (1585/2966) 0 * * Os_TE_715487 Chr10 1360415 1360414 - ORSgTERT00201216 11284 0.4622 (770/1666) 0 * * Os_TE_715482 Chr10 1357477 1357476 + ORSgTEMT00600192 355 0.0014 (4/2955) 0 * * Os_TE_715481 Chr10 1356750 1355294 + OSTE21 1271 0.0834 (239/2867) 1 Intact * Os_TE_715395 Chr10 1320430 1320431 + TRUNCATOR2_LTR 2904 0.0007 (1/1397) 0 * Os_TE_715394 Os_TE_715394 Chr10 1320426 1320425 - TRUNCATOR2_LTR 2904 0.0007 (1/1396) 0 * Os_TE_715395 Os_TE_715385 Chr10 1313236 1313235 + TRUNCATOR 2918 0.0029 (5/1727) 0 * * Os_TE_715380 Chr10 1311108 1311109 + SZ-21LTR 1236 0.0012 (2/1708) 0 * * Os_TE_715379 Chr10 1310717 1310718 + SZ-22_LTR 4403 0.0006 (1/1730) 0 * * Os_TE_715377 Chr10 1308349 1308348 + STOWAWAY51_OS 246 0.0035 (6/1725) 0 * * Os_TE_715374 Chr10 1308043 1308044 - NDNA1TNA_OS 334 0.0058 (10/1712) 0 * Os_TE_715373 Os_TE_715373 Chr10 1308041 1308040 + NDNA1TNA_OS 334 0.0058 (10/1712) 0 * Os_TE_715374 Os_TE_715369 Chr10 1307317 1307316 - TRUNCATOR 2918 0.0411 (71/1726) 0 * * Os_TE_715368 Chr10 1307234 1307235 - ORSiTERT00200154 9386 0.0246 (40/1623) 0 * * Os_TE_715367 Chr10 1307226 1307225 + TRUNCATOR 2918 0.4717 (767/1626) 0 * * Os_TE_715366 Chr10 1307225 1307226 - TRUNCATOR 2918 0.4542 (778/1713) 0 * * Os_TE_715363 Chr10 1306580 1306579 + NDNA1TNA_OS 334 0.1510 (252/1669) 0 * * Os_TE_715353 Chr10 1303910 1303911 - MPING 430 0.0006 (1/1687) 0 * Os_TE_715352 Os_TE_715352 Chr10 1303908 1303907 + MPING 430 0.0006 (1/1674) 0 * Os_TE_715353 Os_TE_715351 Chr10 1303649 1303650 - MuDR4_OS 7610 0.0415 (71/1710) 0 * Os_TE_715350 Os_TE_715350 Chr10 1303641 1303640 - MuDR4_OS 7610 0.0376 (64/1703) 0 * Os_TE_715351 Os_TE_715342 Chr10 1303100 1303099 - RIREX_LTR 8828 0.0006 (1/1717) 0 * * Os_TE_715331 Chr10 1298662 1298661 + ORSiCMCM00100019 2717 0.0006 (1/1602) 0 * * Os_TE_715268 Chr10 1273305 1273304 - ORSiTERT00200154 9386 0.0446 (69/1548) 0 * * Os_TE_715259 Chr10 1269847 1269848 + COPIA2-LTR_OS 6433 0.0007 (1/1445) 0 * Os_TE_715258 Os_TE_715258 Chr10 1269843 1269842 - COPIA2-LTR_OS 6433 0.0004 (1/2794) 0 * Os_TE_715259 Os_TE_715203 Chr10 1242390 1242389 + MDR2 6967 0.0020 (6/2971) 0 * Os_TE_715202 Os_TE_715202 Chr10 1242376 1242377 - MDR2 6967 0.0024 (7/2953) 0 * Os_TE_715203 Os_TE_715193 Chr10 1240002 1240003 + ORSgTEMT01701663 106 0.0003 (1/2910) 0 * * Os_TE_715184 Chr10 1235376 1235377 + ORSiTERTOOT00296 5553 0.0003 (1/2976) 0 * Os_TE_715183 Os_TE_715183 Chr10 1235372 1235371 - SC-3_LTR 5748 0.0003 (1/2976) 0 * Os_TE_715184 Os_TE_715166 Chr10 1222451 1222452 + RIRE5-LTR_OS 6427 0.0039 (3/764) -1 * * Os_TE_715162 Chr10 1213981 1213980 - ORSgTETNOOT01872 202 0.0003 (1/2986) 0 * * Os_TE_715146 Chr10 1212220 1212219 + NDNA1TNA_OS 334 0.0226 (67/2967) 0 * Os_TE_715145 Os_TE_715145 Chr10 1212219 1212220 + ORSgTEMT00101674 340 0.0236 (70/2968) 0 * Os_TE_715146 Os_TE_715132 Chr10 1209427 1209428 - RETROSAT2LTRA 3112 0.1368 (404/2954) 0 * Os_TE_715131 Os_TE_715131 Chr10 1209423 1209422 + RETROSAT2LTRA 3112 0.1336 (395/2957) 0 * Os_TE_715132 Os_TE_715129 Chr10 1208630 1208631 + RIREX_LTR 8828 0.0121 (36/2971) 0 * Os_TE_715128 Os_TE_715128 Chr10 1208626 1208625 - RIREX_LTR 8828 0.0131 (39/2968) 0 * Os_TE_715129 Os_TE_715111 Chr10 1203660 1203659 - RIREX_LTR 8828 0.0014 (4/2856) 0 * * Os_TE_715109 Chr10 1203594 1203595 + ORSgTEMT01601122 212 0.0517 (148/2862) 0 * * Os_TE_715074 Chr10 1175009 1175008 + RETRO2_LTR 12874 0.0023 (7/2983) 0 * * Os_TE_715072 Chr10 1174322 1174321 + TRUNCATOR 2918 0.0007 (2/2943) 0 * Os_TE_715071 Os_TE_715071 Chr10 1174321 1174322 - TRUNCATOR 2918 0.0003 (1/2942) 0 * Os_TE_715072 Os_TE_715042 Chr10 1167265 1167266 + SPMLIKE 10989 0.2094 (617/2946) 0 * * Os_TE_715025 Chr10 1160663 1160662 - RETROFIT7_LTR 4788 0.3590 (601/1674) 0 * * Os_TE_715013 Chr10 1156653 1156654 + RIRE2_LTR 11306 0.0040 (8/1988) 0 * Os_TE_715012 Os_TE_715012 Chr10 1156649 1156648 - RIRE2_LTR 11306 0.0050 (8/1586) 0 * Os_TE_715013 Os_TE_714998 Chr10 1141500 1141499 + SEVERIN-2 1952 0.0440 (100/2273) 0 * * Os_TE_714967 Chr10 1133044 1133045 + MERMITEJ 1498 0.0025 (5/2040) 0 * Os_TE_714966 Os_TE_714966 Chr10 1133036 1133035 - MERMITEJ 1498 0.0026 (6/2283) 0 * Os_TE_714967 Os_TE_714962 Chr10 1131016 1131017 + ORSiTERTOOT00392 5205 0.0716 (163/2275) 0 * Os_TE_714961 Os_TE_714961 Chr10 1131012 1131011 - ORSiTERTOOT00392 5205 0.0706 (161/2281) 0 * Os_TE_714962 Os_TE_714956 Chr10 1123750 1123749 + F770 284 0.0007 (2/2957) 0 * * Os_TE_714939 Chr10 1121608 1120340 + RETRO2_LTR 12874 0.0757 (210/2775) 1 Solo_LTR Os_TE_714936 Os_TE_714936 Chr10 1120340 1121608 - RETRO2_LTR 12874 0.0804 (214/2661) 1 Solo_LTR Os_TE_714939 Os_TE_714934 Chr10 1119825 1119824 + JOUZHENA 607 0.0085 (25/2927) 0 * * Os_TE_714924 Chr10 1117800 1117801 - INDITTO 263 0.0004 (1/2841) 0 * Os_TE_714923 Os_TE_714923 Chr10 1117798 1117797 - ORSgTETNOOT00053 263 0.0007 (2/2920) 0 * Os_TE_714924 Os_TE_714908 Chr10 1110667 1110666 - STOWAWAY14_OS 258 0.0020 (6/2980) 0 * * Os_TE_714900 Chr10 1108130 1108129 - OSTE17 734 0.0003 (1/2968) 0 * * Os_TE_714899 Chr10 1107875 1107874 - ORSgTEMT01600639 228 0.0017 (5/2989) 0 * Os_TE_714898 Os_TE_714898 Chr10 1107872 1107873 - ORSgTEMT01601208 238 0.0017 (5/2897) 0 * Os_TE_714899 Os_TE_714897 Chr10 1107287 1107288 - ENSPM4_OS 11610 0.0921 (119/1292) 0 * * Os_TE_714887 Chr10 1105996 1105995 - CACTA-H 1152 0.0003 (1/2950) 0 * Os_TE_714886 Os_TE_714886 Chr10 1105995 1105996 + CACTA-B 1103 0.0017 (5/2956) 0 * Os_TE_714887 Os_TE_714885 Chr10 1105912 1105913 + CACTA-G1 797 0.0021 (6/2908) 0 * Os_TE_714884 Os_TE_714884 Chr10 1105910 1105909 - CACTA-G1 797 0.0014 (4/2918) 0 * Os_TE_714885 Os_TE_714874 Chr10 1104740 1104741 + TRUNCATOR2_LTR 2904 0.0034 (10/2977) 0 * Os_TE_714873 Os_TE_714873 Chr10 1104736 1104735 - TRUNCATOR2_LTR 2904 0.0034 (10/2979) 0 * Os_TE_714874 Os_TE_714847 Chr10 1097497 1097498 + INDITTO 263 0.2536 (753/2969) 0 * Os_TE_714846 Os_TE_714846 Chr10 1097495 1097494 - INDITTO 263 0.2558 (759/2967) 0 * Os_TE_714847 Os_TE_714844 Chr10 1097344 1097343 + ORSgTEMT01601591 242 0.0003 (1/2960) 0 * Os_TE_714843 Os_TE_714843 Chr10 1097338 1097339 + STOWAWAY51_OS 246 0.0003 (1/2971) 0 * Os_TE_714844 Os_TE_714839 Chr10 1094516 1094517 - SC-3_LTR 5748 0.0017 (5/2990) 0 * Os_TE_714838 Os_TE_714838 Chr10 1094512 1094511 + ORSiTERTOOT00296 5553 0.0020 (6/2992) 0 * Os_TE_714839 Os_TE_714831 Chr10 1091473 1091474 - ORSgTEMT02000041 194 0.0144 (43/2978) 0 * * Os_TE_714826 Chr10 1087764 1087765 + ORSiTERTOOT00226 792 0.0003 (1/2996) 0 * Os_TE_714825 Os_TE_714825 Chr10 1087760 1087759 - SZ-22_LTR 4403 0.0003 (1/2996) 0 * Os_TE_714826 Os_TE_714785 Chr10 1066924 1066925 - EnSpm-10_OS 11265 0.0474 (13/274) 0 * Os_TE_714784 Os_TE_714784 Chr10 1066922 1066921 + EnSpm-10_OS 11265 0.0468 (13/278) 0 * Os_TE_714785 Os_TE_714767 Chr10 1049472 1049473 - MPING 430 0.0007 (2/2999) 0 * * Os_TE_714762 Chr10 1048587 1048588 + ORSiCMCM00100019 2717 0.0097 (29/2986) 0 * Os_TE_714761 Os_TE_714761 Chr10 1048583 1048582 - TRUNCATOR2_LTR 2904 0.0104 (31/2986) 0 * Os_TE_714762 Os_TE_714685 Chr10 1004003 1004002 - AMYLTP 383 0.6840 (1933/2826) 0 * * Os_TE_714682 Chr10 1003309 1003308 + AMYLTP 383 0.0007 (2/2852) 0 * * Os_TE_714668 Chr10 1001847 1001848 + STOWAWAY11_OS 292 0.0133 (39/2933) 0 * Os_TE_714667 Os_TE_714667 Chr10 1001846 1001845 - STOWAWAY11_OS 292 0.0130 (38/2928) 0 * Os_TE_714668 Os_TE_714664 Chr10 998771 998770 - HELITRON2_OS 15167 0.0331 (97/2931) 0 * Os_TE_714663 Os_TE_714663 Chr10 998770 998771 + HELITRON2_OS 15167 0.0286 (84/2935) 0 * Os_TE_714664 Os_TE_714570 Chr10 944099 951963 - MuDR3_OS 8604 0.3943 (865/2194) 1 Intact * Os_TE_714564 Chr10 942670 942671 - RIRE2_LTR 11306 0.0003 (1/2971) 0 * Os_TE_714563 Os_TE_714563 Chr10 942666 942665 - ORSgTERT00201216 11284 0.0003 (1/2984) 0 * Os_TE_714564 Os_TE_714558 Chr10 935685 935898 + STOWAWAY21_OS 243 0.2880 (856/2972) 1 Intact * Os_TE_714550 Chr10 931991 931990 + ORSiTERT00200145 12238 0.0329 (98/2977) 0 * * Os_TE_714509 Chr10 911501 911502 + DS-RICE2N 613 0.0290 (86/2965) 0 * Os_TE_714508 Os_TE_714508 Chr10 911494 911493 - DS-RICE2N 613 0.0305 (91/2988) 0 * Os_TE_714509 Os_TE_714507 Chr10 911493 911494 - RIREX_LTR 8828 0.0067 (20/2971) 0 * * Os_TE_714478 Chr10 906692 906693 - COPIA2-LTR_OS 6433 0.0003 (1/2942) 0 * * Os_TE_714475 Chr10 906075 906074 + CACTA-H 1152 0.0003 (1/2866) 0 * * Os_TE_714469 Chr10 904759 904760 + ORSgTEMT02000047 197 0.3629 (1039/2863) 0 * * Os_TE_714424 Chr10 881336 881337 - RETRO1_LTR 8314 0.0059 (17/2860) 0 * Os_TE_714423 Os_TE_714423 Chr10 881332 881331 + RETRO1_LTR 8314 0.0063 (18/2856) 0 * Os_TE_714424 Os_TE_714415 Chr10 876977 876976 + ORSgTERT00200633 1080 0.0003 (1/2915) 0 * * Os_TE_714413 Chr10 875976 875977 + DS-RICE4N 715 0.0028 (8/2860) 0 * * Os_TE_714392 Chr10 865593 865592 + ORSgTEMT00100994 341 0.7677 (2267/2953) 0 * * Os_TE_714383 Chr10 862254 862255 - OSLINE1-4 4779 0.7655 (2262/2955) 0 * * Os_TE_714377 Chr10 856477 856478 + MERMITEB 1610 0.7698 (2264/2941) 0 * * Os_TE_714368 Chr10 855618 855619 - ORSgTEMT00502214 125 0.7826 (2250/2875) 0 * * Os_TE_714354 Chr10 854020 854019 - SZ-44LTR 1408 0.1321 (391/2959) 0 * * Os_TE_714339 Chr10 851995 851994 + SINE1OS 127 0.8804 (2311/2625) 0 * * Os_TE_714337 Chr10 850775 850776 - EnSpm-9_OS 8955 0.7692 (2296/2985) 0 * * Os_TE_714336 Chr10 850030 850031 - OSR3_LTR 5201 0.0003 (1/2994) 0 * * Os_TE_714325 Chr10 845235 845236 + NDNA1TNA_OS 334 0.0003 (1/2986) 0 * Os_TE_714324 Os_TE_714324 Chr10 845233 845232 - NDNA1TNA_OS 334 0.0003 (1/2919) 0 * Os_TE_714325 Os_TE_714321 Chr10 844403 844402 - ORSgTEMT01602413 239 0.8273 (2271/2745) 0 * * Os_TE_714310 Chr10 839148 838995 + ORSgTEMT01701591 154 0.1073 (317/2954) 1 Intact Os_TE_714309 Os_TE_714309 Chr10 838995 839148 - ORSgTEMT01702045 137 0.1070 (315/2945) 1 Intact Os_TE_714310 Os_TE_714304 Chr10 835740 836073 + NDNA1TNA_OS 334 0.1132 (311/2747) 1 Intact * Os_TE_714303 Chr10 835692 835479 - COWARD 200 0.1216 (310/2550) 1 Intact Os_TE_714301 Os_TE_714301 Chr10 835479 835692 + COWARD-3 221 0.1083 (313/2891) 1 Intact Os_TE_714303 Os_TE_714296 Chr10 832446 832853 + ORSiTERTOOT00315 5125 0.8376 (325/388) 1 Intact * Os_TE_714295 Chr10 832374 832375 + ORSgTEMT02400245 225 0.8398 (1924/2291) 0 * * Os_TE_714276 Chr10 826372 826371 - ORSgTEMT01600152 226 0.0185 (53/2863) 0 * * Os_TE_714274 Chr10 824641 824642 - MuDR4_OS 7610 0.0051 (12/2363) 0 * Os_TE_714273 Os_TE_714273 Chr10 824634 824633 - MuDR4_OS 7610 0.0567 (20/353) 0 * Os_TE_714274 Os_TE_714272 Chr10 824608 823995 + TWIFB1 3737 0.3400 (289/850) 1 Intact * Os_TE_714270 Chr10 823896 823897 - MuDR2_OS 6770 0.1377 (339/2462) 0 * * Os_TE_714267 Chr10 823195 823101 + SZ-58LTR 114 0.8373 (314/375) 1 Intact * Os_TE_714264 Chr10 819123 819124 - RETROSAT2LTRA 3112 0.8705 (2568/2950) 0 * * Os_TE_714262 Chr10 817627 817628 + RIREX_LTR 8828 0.0003 (1/2934) 0 * * Os_TE_714261 Chr10 817431 817280 + ORSgTEMT01700791 134 0.1704 (392/2300) 1 Intact Os_TE_714258 Os_TE_714258 Chr10 817276 817431 - ORSgTEMT01701348 105 0.1554 (395/2542) 1 Intact Os_TE_714261 Os_TE_714251 Chr10 815105 815104 + ENSPM4_OS 11610 0.0068 (20/2924) 0 * * Os_TE_714250 Chr10 814617 814618 - ORSgTEMT00500773 153 0.8901 (2511/2821) 0 * * Os_TE_714249 Chr10 814294 814056 + ORSgTEMT01602181 239 0.1060 (314/2963) 1 Intact * Os_TE_714245 Chr10 812364 812365 - CACTA-H 1152 0.8845 (2420/2736) 0 * Os_TE_714244 Os_TE_714244 Chr10 812362 812361 + SPMLIKE 10989 0.8891 (2526/2841) 0 * Os_TE_714245 Os_TE_714243 Chr10 811568 811311 + DITAILA 257 0.1080 (320/2963) 1 Intact * Os_TE_714239 Chr10 810929 811103 + TNR2 157 0.1145 (320/2795) 1 Intact * Os_TE_714234 Chr10 807025 807609 - ORSgTEMT03000007 372 0.1146 (342/2983) 1 Intact * Os_TE_714231 Chr10 805207 805208 + COPIA2-LTR_OS 6433 0.0006 (1/1722) 0 * Os_TE_714230 Os_TE_714230 Chr10 805203 805202 - COPIA2-LTR_OS 6433 0.0007 (1/1483) 0 * Os_TE_714231 Os_TE_714201 Chr10 797893 797644 - ORSgTEMT01602413 239 0.5154 (1435/2784) 1 Intact * Os_TE_714179 Chr10 795731 795732 - COPI2_LTR 4733 0.0007 (1/1461) 0 * * Os_TE_714172 Chr10 792175 792176 - ORSgTEMT00100507 344 0.0034 (5/1459) 0 * * Os_TE_714161 Chr10 788000 788001 + ENSPM5_OS 9581 0.1860 (553/2973) 0 * Os_TE_714160 Os_TE_714160 Chr10 787998 787997 - ENSPM6_OS 9815 0.1857 (552/2972) 0 * Os_TE_714161 Os_TE_714153 Chr10 784801 784800 + SZ-62LTR 3649 0.0018 (3/1646) 0 * * Os_TE_714152 Chr10 783454 783453 + WUWU 113 0.0006 (1/1679) 0 * * Os_TE_714137 Chr10 779257 779559 - INDITTO 263 0.7383 (268/363) 1 Intact * Os_TE_714120 Chr10 775572 775573 + SZ-55_LTR 10318 0.0010 (3/2987) 0 * * Os_TE_714105 Chr10 771489 771490 + JOUZHENA 607 0.0017 (5/2933) -1 * * Os_TE_714095 Chr10 768181 768182 + RETROSAT2LTR 12796 0.0030 (5/1669) 0 * * Os_TE_714088 Chr10 765375 765376 - STOWAWAY1_OS 149 0.0007 (2/2977) 0 * * Os_TE_714075 Chr10 759394 759395 - RIREX_LTR 8828 0.0012 (2/1699) 0 * * Os_TE_714055 Chr10 745772 745773 - RIREX_LTR 8828 0.0006 (1/1694) 0 * Os_TE_714054 Os_TE_714054 Chr10 745768 745767 + RIREX_LTR 8828 0.0006 (1/1691) 0 * Os_TE_714055 Os_TE_714053 Chr10 745699 745700 + RIREX_LTR 8828 0.0013 (2/1543) 0 * Os_TE_714052 Os_TE_714052 Chr10 745695 745694 - RIREX_LTR 8828 0.0012 (2/1692) 0 * Os_TE_714053 Os_TE_714051 Chr10 745387 745388 - RIREX_LTR 8828 0.0006 (1/1694) 0 * Os_TE_714050 Os_TE_714050 Chr10 745383 745382 + RIREX_LTR 8828 0.0006 (1/1689) 0 * Os_TE_714051 Os_TE_714002 Chr10 731275 731276 + ORSiTERTOOT00027 10853 0.0003 (1/2949) 0 * Os_TE_714001 Os_TE_714001 Chr10 731271 731270 - RIRE3A_LTR 10580 0.0003 (1/2942) 0 * Os_TE_714002 Os_TE_713978 Chr10 728496 728497 + ORSiCMCM00100019 2717 0.0285 (84/2946) 0 * Os_TE_713977 Os_TE_713977 Chr10 728492 728491 - TRUNCATOR2_LTR 2904 0.0290 (86/2962) 0 * Os_TE_713978 Os_TE_713976 Chr10 728121 728122 - TRUNCATOR2_LTR 2904 0.0006 (1/1664) 0 * Os_TE_713975 Os_TE_713975 Chr10 728117 728116 + TRUNCATOR2_LTR 2904 0.0006 (1/1662) 0 * Os_TE_713976 Os_TE_713966 Chr10 724173 724174 - ORSiTERT00200154 9386 0.0271 (81/2984) 0 * * Os_TE_713924 Chr10 712780 712781 - TRUNCATOR2_LTR 2904 0.0007 (2/2983) 0 * * Os_TE_713873 Chr10 696906 696907 + JOUZHENA 607 0.0017 (5/2968) 0 * Os_TE_713872 Os_TE_713872 Chr10 696899 696898 - JOUZHENA 607 0.0013 (4/2971) 0 * Os_TE_713873 Os_TE_713871 Chr10 696788 696789 - INDITTO 263 0.1282 (376/2932) 0 * Os_TE_713870 Os_TE_713870 Chr10 696786 696785 + INDITTO 263 0.1257 (371/2952) 0 * Os_TE_713871 Os_TE_713869 Chr10 696733 696734 + STOWAWAY51_OS 246 0.0003 (1/2955) 0 * * Os_TE_713863 Chr10 696045 696044 + ORSgTEMT04800085 366 0.0027 (8/2981) 0 * * Os_TE_713862 Chr10 694998 694999 - RETRO1_LTR 8314 0.0007 (2/2933) 0 * Os_TE_713861 Os_TE_713861 Chr10 694994 694993 + RETRO2A_LTR 12895 0.0007 (2/2945) 0 * Os_TE_713862 Os_TE_713851 Chr10 689391 689392 + SZ-9LTR 965 0.0292 (87/2981) 0 * Os_TE_713850 Os_TE_713850 Chr10 689387 689386 - SZ-9LTR 965 0.0292 (87/2980) 0 * Os_TE_713851 Os_TE_713841 Chr10 684700 684701 + COPI2_LTR 4733 0.0003 (1/2987) 0 * Os_TE_713840 Os_TE_713840 Chr10 684696 684695 - COPI2_LTR 4733 0.0003 (1/2988) 0 * Os_TE_713841 Os_TE_713831 Chr10 681887 681888 - COPI2_LTR 4733 0.0007 (2/2995) 0 * * Os_TE_713823 Chr10 676761 676762 + AMYLTP 383 0.1090 (322/2953) 0 * Os_TE_713822 Os_TE_713822 Chr10 676753 676752 - AMYLTP 383 0.1092 (322/2949) 0 * Os_TE_713823 Os_TE_713794 Chr10 667887 667888 - ORSgTETN00200001 10994 0.0007 (2/2975) 0 * Os_TE_713793 Os_TE_713793 Chr10 667885 667884 + SPMLIKE 10989 0.0007 (2/2979) 0 * Os_TE_713794 Os_TE_713790 Chr10 666678 666677 + CACTA-M 1129 0.0360 (99/2753) -1 * * Os_TE_713774 Chr10 664606 664607 + rn_179-105_LTR 4837 0.0570 (162/2842) 0 * Os_TE_713773 Os_TE_713773 Chr10 664602 664601 - rn_179-105_LTR 4837 0.0550 (158/2874) 0 * Os_TE_713774 Os_TE_713772 Chr10 664384 660730 + SZ-67LTR 1540 0.1105 (312/2823) -1 Intact Os_TE_713766 Os_TE_713766 Chr10 660730 664384 - SZ-67LTR 1540 0.1206 (355/2943) 1 Intact Os_TE_713772 Os_TE_713746 Chr10 653205 653206 - RIREX_LTR 8828 0.0014 (4/2866) 0 * Os_TE_713745 Os_TE_713745 Chr10 653201 653200 + RIREX_LTR 8828 0.0013 (4/2967) 0 * Os_TE_713746 Os_TE_713744 Chr10 653144 653145 - YOUREN 286 0.0020 (6/2947) 0 * Os_TE_713743 Os_TE_713743 Chr10 653142 653141 + YOUREN 286 0.0023 (7/2990) 0 * Os_TE_713744 Os_TE_713726 Chr10 649613 649614 - TNR12 528 0.0347 (103/2970) 0 * Os_TE_713725 Os_TE_713725 Chr10 649606 649605 + TNR12 528 0.0330 (98/2972) 0 * Os_TE_713726 Os_TE_713689 Chr10 634762 634763 - SZ-62LTR 3649 0.2144 (615/2869) 0 * Os_TE_713688 Os_TE_713688 Chr10 634758 634757 + SZ-62LTR 3649 0.1845 (518/2807) 0 * Os_TE_713689 Os_TE_713686 Chr10 634736 634735 - ORSgTETN00200001 10994 0.0057 (16/2804) 0 * * Os_TE_713679 Chr10 633583 633582 + RPO_OS 1983 0.0021 (6/2925) 0 * * Os_TE_713671 Chr10 630806 630807 + NDNA1TNA_OS 334 0.0004 (1/2646) 0 * * Os_TE_713648 Chr10 617244 617243 + EnSpm-10_OS 11265 0.0294 (87/2964) 0 * * Os_TE_713590 Chr10 591070 591069 - ORSgTETN00200001 10994 0.0003 (1/2993) 0 * * Os_TE_713585 Chr10 590769 590768 - TEMPINDAS 4259 0.0950 (107/1126) 0 * * Os_TE_713571 Chr10 588170 588171 + RIRE3_LTR 12054 0.0303 (90/2971) 0 * * Os_TE_713568 Chr10 586289 586288 + ENSPM6_OS 9815 0.4766 (1295/2717) 0 * * Os_TE_713560 Chr10 584592 584591 + ORSgTEMT01601525 239 0.0921 (272/2954) 0 * Os_TE_713559 Os_TE_713559 Chr10 584589 584590 - ORSgTEMT01600079 232 0.0959 (284/2960) 0 * Os_TE_713560 Os_TE_713556 Chr10 583132 583133 - AMYLTP 383 0.0015 (4/2714) 0 * Os_TE_713555 Os_TE_713555 Chr10 583124 583123 + AMYLTP 383 0.0013 (4/2983) 0 * Os_TE_713556 Os_TE_713480 Chr10 553640 553641 + MPING 430 0.0027 (1/375) 0 * * Os_TE_713460 Chr10 545099 545098 + RETRO1_LTR 8314 0.0047 (2/425) 0 * * Os_TE_713426 Chr10 528540 528541 + SZ-22_LTR 4403 0.0174 (52/2996) 0 * Os_TE_713425 Os_TE_713425 Chr10 528536 528535 + ORSiTERTOOT00034 791 0.0174 (52/2997) 0 * Os_TE_713426 Os_TE_713423 Chr10 528229 528228 + COPIA2-LTR_OS 6433 0.0010 (3/2994) 0 * * Os_TE_713422 Chr10 527937 527938 + COPIA2-LTR_OS 6433 0.0004 (1/2856) 0 * Os_TE_713421 Os_TE_713421 Chr10 527933 527932 - COPIA2-LTR_OS 6433 0.0007 (2/2945) 0 * Os_TE_713422 Os_TE_713413 Chr10 526064 526065 + COPI2_LTR 4733 0.0003 (1/2997) 0 * * Os_TE_713408 Chr10 520166 520167 + SEVERIN-2 1952 0.0282 (84/2975) 0 * * Os_TE_713406 Chr10 519834 519835 + SPMLIKE 10989 0.0017 (5/2949) 0 * Os_TE_713405 Os_TE_713405 Chr10 519832 519831 - ORSgTETN00200001 10994 0.0017 (5/2942) 0 * Os_TE_713406 Os_TE_713339 Chr10 489802 489803 - OSTE15 1168 0.0288 (86/2989) 0 * * Os_TE_713337 Chr10 483209 488006 - SC-10_LTR 4920 0.1004 (293/2919) 1 Intact * Os_TE_713335 Chr10 482381 482380 - RETRO2_LTR 12874 0.0499 (149/2983) 0 * * Os_TE_713307 Chr10 475774 475775 - COPIA2-LTR_OS 6433 0.0020 (2/993) 0 * Os_TE_713306 Os_TE_713306 Chr10 475770 475769 + COPIA2-LTR_OS 6433 0.0004 (1/2721) 0 * Os_TE_713307 Os_TE_713300 Chr10 473741 473742 - SZ-62LTR 3649 0.0007 (2/2721) 0 * * Os_TE_713294 Chr10 470466 470467 + RIREX_LTR 8828 0.0004 (1/2801) 0 * Os_TE_713293 Os_TE_713293 Chr10 470462 470461 - RIREX_LTR 8828 0.0004 (1/2803) 0 * Os_TE_713294 Os_TE_713213 Chr10 445535 445534 + TRUNCATOR 2918 0.0491 (147/2993) 0 * * Os_TE_713212 Chr10 445179 445178 - TRUNCATOR 2918 0.0003 (1/2995) 0 * * Os_TE_713209 Chr10 444915 444914 - COPI2_LTR 4733 0.0007 (2/2995) 0 * * Os_TE_713206 Chr10 444775 444774 - OSTONOR1_LTR 6440 0.0003 (1/2962) 0 * * Os_TE_713182 Chr10 438301 438302 + COPI2_LTR 4733 0.1527 (448/2934) 0 * * Os_TE_713177 Chr10 436367 436368 + SC-4_LTR 5218 0.0007 (2/2996) 0 * Os_TE_713176 Os_TE_713176 Chr10 436363 436362 - SC-4_LTR 5218 0.0007 (2/2994) 0 * Os_TE_713177 Os_TE_713175 Chr10 435767 435768 + RIRE2_LTR 11306 0.0003 (1/2971) 0 * Os_TE_713174 Os_TE_713174 Chr10 435763 435762 - RIRE2_LTR 11306 0.0003 (1/2966) 0 * Os_TE_713175 Os_TE_713172 Chr10 435421 435422 - STOWAWAY11_OS 292 0.4049 (1185/2927) 0 * * Os_TE_713170 Chr10 434924 434925 + COPIA2-LTR_OS 6433 0.0003 (1/2936) 0 * Os_TE_713169 Os_TE_713169 Chr10 434920 434919 - COPIA2-LTR_OS 6433 0.0004 (1/2742) 0 * Os_TE_713170 Os_TE_713155 Chr10 426331 426332 - TYPEM 227 0.1604 (475/2962) 0 * Os_TE_713154 Os_TE_713154 Chr10 426330 426329 - ORSgTEMT02400179 221 0.1578 (464/2940) 0 * Os_TE_713155 Os_TE_713126 Chr10 416155 416154 + STOWAWAY51_OS 246 0.0074 (22/2976) 0 * Os_TE_713125 Os_TE_713125 Chr10 416149 416150 + ORSgTEMT01601591 242 0.0064 (18/2802) 0 * Os_TE_713126 Os_TE_713098 Chr10 405427 405426 + ORSgTETNOOT00032 218 0.0363 (86/2366) 0 * * Os_TE_713040 Chr10 376690 376691 + ORSgTETNOOT00908 242 0.0317 (94/2962) 0 * * Os_TE_713002 Chr10 367865 367866 - RETRO1_LTR 8314 0.0010 (3/2983) 0 * Os_TE_713001 Os_TE_713001 Chr10 367861 367860 + RETRO1_LTR 8314 0.0010 (3/2983) 0 * Os_TE_713002 Os_TE_713000 Chr10 367834 367835 - MuDR4_OS 7610 0.0007 (2/2989) 0 * Os_TE_712999 Os_TE_712999 Chr10 367827 367826 - MuDR4_OS 7610 0.0010 (3/2990) 0 * Os_TE_713000 Os_TE_712964 Chr10 355050 355049 - SC-3_LTR 5748 0.0003 (1/2991) 0 * * Os_TE_712963 Chr10 353230 353231 - SC-3_LTR 5748 0.0003 (1/2976) 0 * Os_TE_712962 Os_TE_712962 Chr10 353226 353225 + ORSiTERTOOT00296 5553 0.0003 (1/2973) 0 * Os_TE_712963 Os_TE_712946 Chr10 346604 346605 - COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * Os_TE_712945 Os_TE_712945 Chr10 346600 346599 + COPIA2-LTR_OS 6433 0.0003 (1/2983) 0 * Os_TE_712946 Os_TE_712935 Chr10 343436 343437 + RIREX_LTR 8828 0.0010 (3/2926) 0 * * Os_TE_712915 Chr10 337001 337000 - TRUNCATOR2_LTR 2904 0.0006 (1/1776) 0 * * Os_TE_712899 Chr10 323085 323086 + COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_712898 Os_TE_712898 Chr10 323081 323080 - COPI2_LTR 4733 0.0003 (1/2988) 0 * Os_TE_712899 Os_TE_712891 Chr10 318901 318902 + RIREX_LTR 8828 0.0007 (2/2947) 0 * * Os_TE_712870 Chr10 310484 310483 - TRUNCATOR 2918 0.4494 (1337/2975) 0 * Os_TE_712869 Os_TE_712869 Chr10 310483 310484 + TRUNCATOR 2918 0.4578 (1371/2995) 0 * Os_TE_712870 Os_TE_712864 Chr10 308345 308346 + COPIA2-LTR_OS 6433 0.0030 (9/2955) 0 * Os_TE_712863 Os_TE_712863 Chr10 308341 308340 - COPIA2-LTR_OS 6433 0.0030 (9/2962) 0 * Os_TE_712864 Os_TE_712832 Chr10 295082 295083 - RETROSAT2LTR 12796 0.0003 (1/2974) 0 * Os_TE_712831 Os_TE_712831 Chr10 295080 295079 + RETROSAT2LTR 12796 0.0003 (1/2962) 0 * Os_TE_712832 Os_TE_712827 Chr10 293770 293771 - MuDR4_OS 7610 0.0007 (2/2720) 0 * Os_TE_712826 Os_TE_712826 Chr10 293763 293762 + MuDR4_OS 7610 0.0012 (3/2499) 0 * Os_TE_712827 Os_TE_712824 Chr10 290458 290459 + INDITTO 263 0.0017 (5/2969) 0 * Os_TE_712823 Os_TE_712823 Chr10 290456 290455 - INDITTO 263 0.0017 (5/2973) 0 * Os_TE_712824 Os_TE_712822 Chr10 290353 290354 + ORSgTEMT01602181 239 0.0135 (40/2965) 0 * * Os_TE_712821 Chr10 290289 290290 + INDITTO 263 0.2377 (709/2983) 0 * Os_TE_712820 Os_TE_712820 Chr10 290287 290286 - INDITTO 263 0.2400 (716/2983) 0 * Os_TE_712821 Os_TE_712818 Chr10 289387 289388 - RIREX_LTR 8828 0.0003 (1/2994) 0 * Os_TE_712817 Os_TE_712817 Chr10 289383 289382 + RIREX_LTR 8828 0.0003 (1/2996) 0 * Os_TE_712818 Os_TE_712816 Chr10 289241 289017 - ORSgTETNOOT02565 240 0.1233 (367/2977) 1 Intact Os_TE_712814 Os_TE_712814 Chr10 289001 289242 + ORSiTEMT01000008 242 0.1231 (367/2981) 1 Intact Os_TE_712816 Os_TE_712812 Chr10 287241 287242 + MPING 430 0.0007 (2/2868) 0 * Os_TE_712811 Os_TE_712811 Chr10 287239 287238 - MPING 430 0.0003 (1/2951) 0 * Os_TE_712812 Os_TE_712809 Chr10 284724 284725 - COPIA2-LTR_OS 6433 0.0532 (159/2986) 0 * * Os_TE_712798 Chr10 283586 283587 - RETRO2_LTR 12874 0.0024 (7/2975) 0 * Os_TE_712797 Os_TE_712797 Chr10 283582 283581 + ORSgTERTOOT00009 12852 0.0024 (7/2916) 0 * Os_TE_712798 Os_TE_712769 Chr10 278569 278568 + RIREX_LTR 8828 0.0020 (5/2441) 0 * * Os_TE_712768 Chr10 278543 278544 - RIREX_LTR 8828 0.0016 (4/2546) 0 * * Os_TE_712709 Chr10 221092 209824 - ORSgTERT00201216 11284 0.2932 (860/2933) 1 Intact Os_TE_712686 Os_TE_712686 Chr10 209824 221092 - RIRE2_LTR 11306 0.2562 (722/2818) 1 Intact Os_TE_712709 Os_TE_712685 Chr10 209787 209788 - TRUNCATOR2_LTR 2904 0.1647 (479/2908) 0 * Os_TE_712684 Os_TE_712684 Chr10 209783 209782 + TRUNCATOR2_LTR 2904 0.1718 (472/2747) 0 * Os_TE_712685 Os_TE_712683 Chr10 209725 209726 - OSTE15 1168 0.7254 (2108/2906) 0 * * Os_TE_712681 Chr10 209527 209526 - SZ-22_LTR 4403 0.7003 (500/714) 0 * * Os_TE_712677 Chr10 208106 208107 - ORSiTERT00100063 7723 0.7159 (2008/2805) 0 * * Os_TE_712635 Chr10 186388 186478 + ORSgTEMT01701324 144 0.7171 (2023/2821) 1 Intact * Os_TE_712626 Chr10 182070 182071 + NDNA1TNA_OS 334 0.0014 (4/2926) 0 * Os_TE_712625 Os_TE_712625 Chr10 182068 182067 - NDNA1TNA_OS 334 0.0014 (4/2947) 0 * Os_TE_712626 Os_TE_712621 Chr10 181697 181696 + ORSgTEMT00501821 144 0.0175 (49/2803) 0 * * Os_TE_712610 Chr10 177092 177091 + SC-7_LTR 4431 0.0629 (187/2973) 0 * * Os_TE_712547 Chr10 160247 160248 + ORSgTEMT01400012 212 0.0007 (2/2989) 0 * * Os_TE_712515 Chr10 152139 152140 + COPI1_LTR 4721 0.0010 (3/2968) 0 * Os_TE_712514 Os_TE_712514 Chr10 152135 152134 - SZ-25LTR 330 0.0010 (3/2965) 0 * Os_TE_712515 Os_TE_712487 Chr10 144674 144673 - TRUNCATOR 2918 0.0556 (157/2825) 0 * Os_TE_712486 Os_TE_712486 Chr10 144672 144673 + TRUNCATOR 2918 0.0625 (181/2898) 0 * Os_TE_712487 Os_TE_712436 Chr10 119153 119152 + ORSiTERTOOT00088 856 0.0022 (6/2718) 0 * * Os_TE_712433 Chr10 118922 118923 - TRUNCATOR 2918 0.8525 (2376/2787) 0 * * Os_TE_712432 Chr10 118773 118774 - SZ-40LTR 2465 0.0004 (1/2725) 0 * * Os_TE_712427 Chr10 117316 117317 - F569 228 0.0007 (2/2875) 0 * Os_TE_712426 Os_TE_712426 Chr10 117314 117313 + F569 228 0.0007 (2/2854) 0 * Os_TE_712427 Os_TE_712424 Chr10 116912 116911 - COPIA2-LTR_OS 6433 0.0003 (1/2939) 0 * * Os_TE_712381 Chr10 104098 104099 + DS-RICE4N 715 0.0399 (116/2905) 0 * Os_TE_712380 Os_TE_712380 Chr10 104088 104087 + ORSiTETN00100011 676 0.0418 (121/2898) 0 * Os_TE_712381 Os_TE_712374 Chr10 101194 101195 + TWIFBIG 3567 0.0023 (7/2993) 0 * Os_TE_712373 Os_TE_712373 Chr10 101187 101186 - ORSiTETNOOT00216 3569 0.0027 (8/2995) 0 * Os_TE_712374 Os_TE_712357 Chr10 97467 97466 - STOWAWAY51_OS 246 0.0411 (123/2991) 0 * * Os_TE_712354 Chr10 96938 96937 + COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * * Os_TE_712346 Chr10 94153 93890 + INDITTO 263 0.1318 (390/2958) 1 Intact Os_TE_712345 Os_TE_712345 Chr10 93890 94153 - INDITTO 263 0.1280 (378/2952) 1 Intact Os_TE_712346 Os_TE_712334 Chr10 90986 90987 + MPING 430 0.0003 (1/2915) 0 * * Os_TE_712316 Chr10 84246 87392 + RETROSAT2LTR 12796 0.1272 (380/2988) 1 Solo_LTR * Os_TE_712313 Chr10 82900 82901 + BAJIELTR 4500 0.0027 (8/2998) 0 * Os_TE_712312 Os_TE_712312 Chr10 82896 82895 - BAJIELTR 4500 0.0027 (8/2995) 0 * Os_TE_712313 Os_TE_712295 Chr10 73422 73423 + COPI2_LTR 4733 0.0003 (1/2987) 0 * Os_TE_712294 Os_TE_712294 Chr10 73418 73417 - COPI2_LTR 4733 0.0003 (1/2986) 0 * Os_TE_712295 Os_TE_712290 Chr10 69754 69753 + Cassandra_OS-LTR 764 0.0010 (3/2992) 0 * * Os_TE_712280 Chr10 62517 62516 - ORSgTERT00201216 11284 0.3464 (1028/2968) 0 * * Os_TE_712209 Chr10 45293 45292 - RIRE3_LTR 12054 0.8401 (2507/2984) 0 * * Os_TE_865138 Chr1 43251755 43251754 - RETRO1_LTR 8314 0.0017 (5/2901) 0 * * Os_TE_865133 Chr1 43249918 43249919 - TESS 244 0.4849 (1250/2578) 0 * Os_TE_865132 Os_TE_865132 Chr1 43249911 43249910 + TESS 244 0.4789 (1227/2562) 0 * Os_TE_865133 Os_TE_865123 Chr1 43245263 43245262 + STOWAWAY45_OS 266 0.0003 (1/2988) 0 * Os_TE_865122 Os_TE_865122 Chr1 43245260 43245261 - STOWAWAY45_OS 266 0.0003 (1/2996) 0 * Os_TE_865123 Os_TE_865120 Chr1 43243401 43243402 + TWIFB1 3737 0.0003 (1/2981) 0 * * Os_TE_865114 Chr1 43241299 43241298 - TRUNCATOR 2918 0.0769 (226/2938) 0 * * Os_TE_865102 Chr1 43239131 43238808 - ORSgTEMT00100865 348 0.7311 (2132/2916) 1 Intact * Os_TE_865089 Chr1 43234278 43234279 + ORSgTETNOOT00908 242 0.0003 (1/2984) 0 * * Os_TE_865087 Chr1 43233080 43233081 + AMYLTP 383 0.0781 (233/2984) 0 * Os_TE_865086 Os_TE_865086 Chr1 43233072 43233071 - AMYLTP 383 0.0781 (233/2984) 0 * Os_TE_865087 Os_TE_865058 Chr1 43222880 43222879 - RETRO1_LTR 8314 0.0803 (240/2989) 0 * * Os_TE_865030 Chr1 43210788 43210789 + ORSiTERTOOT00296 5553 0.0014 (4/2940) 0 * Os_TE_865029 Os_TE_865029 Chr1 43210784 43210783 - SC-3_LTR 5748 0.0014 (4/2960) 0 * Os_TE_865030 Os_TE_864999 Chr1 43198033 43198032 + GYPSY-A_LTR 8951 0.0003 (1/2992) 0 * * Os_TE_864983 Chr1 43187502 43187503 - OSTE20 496 0.0781 (234/2997) 0 * Os_TE_864982 Os_TE_864982 Chr1 43187498 43187497 + OSTE20 496 0.0787 (236/2999) 0 * Os_TE_864983 Os_TE_864973 Chr1 43179423 43179422 - ORSgTEMT02400179 221 0.0003 (1/2996) 0 * * Os_TE_864965 Chr1 43173485 43173486 + MDM2 312 0.0013 (3/2326) 0 * Os_TE_864964 Os_TE_864964 Chr1 43173477 43173476 + MDM2 312 0.0033 (8/2439) 0 * Os_TE_864965 Os_TE_864961 Chr1 43171905 43171906 + ORSgTEMT01601122 212 0.5413 (1578/2915) 0 * * Os_TE_864956 Chr1 43170245 43170244 + BAJIELTR 4500 0.5573 (1662/2982) 0 * * Os_TE_864955 Chr1 43169678 43167875 + RPO_OS 1983 0.4297 (1229/2860) 1 Intact Os_TE_864951 Os_TE_864951 Chr1 43167875 43169596 - RPO_OS 1983 0.4498 (1282/2850) 1 Intact Os_TE_864955 Os_TE_864950 Chr1 43167825 43167826 - SZ-40LTR 2465 0.0816 (238/2916) 0 * Os_TE_864949 Os_TE_864949 Chr1 43167821 43167820 + GYPSY-A_LTR 8951 0.0779 (225/2887) 0 * Os_TE_864950 Os_TE_864948 Chr1 43167751 43167223 - Mudr5_OS 5952 0.4433 (1298/2928) 1 Intact Os_TE_864945 Os_TE_864945 Chr1 43167221 43167749 + Mudr5_OS 5952 0.4481 (1264/2821) 1 Intact Os_TE_864948 Os_TE_864943 Chr1 43167159 43167160 - STOWAWAY51_OS 246 0.0025 (7/2853) 0 * * Os_TE_864942 Chr1 43166234 43166235 - COPIA2-LTR_OS 6433 0.0720 (215/2987) 0 * Os_TE_864941 Os_TE_864941 Chr1 43166230 43166229 + COPIA2-LTR_OS 6433 0.1441 (208/1443) 0 * Os_TE_864942 Os_TE_864938 Chr1 43163227 43163228 - SZ-29LTR 1393 0.5589 (1671/2990) 0 * Os_TE_864937 Os_TE_864937 Chr1 43163223 43163222 + SZ-44LTR 1408 0.4822 (1247/2586) 0 * Os_TE_864938 Os_TE_864935 Chr1 43160561 43160562 + SZ-67LTR 1540 0.0017 (5/2988) 0 * Os_TE_864934 Os_TE_864934 Chr1 43160557 43160556 - SZ-67LTR 1540 0.0017 (5/2991) 0 * Os_TE_864935 Os_TE_864932 Chr1 43159294 43159295 + MDR2 6967 0.2831 (838/2960) 0 * Os_TE_864931 Os_TE_864931 Chr1 43159286 43159285 - MDR2 6967 0.2834 (838/2957) 0 * Os_TE_864932 Os_TE_864930 Chr1 43158465 43158466 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * * Os_TE_864914 Chr1 43146669 43146670 - OSR3_LTR 5201 0.0003 (1/2993) 0 * Os_TE_864913 Os_TE_864913 Chr1 43146665 43146664 + OSR3_LTR 5201 0.0003 (1/2990) 0 * Os_TE_864914 Os_TE_864910 Chr1 43144032 43144031 + ORSgTEMT01602181 239 0.5638 (1666/2955) 0 * Os_TE_864909 Os_TE_864909 Chr1 43144027 43144028 + ORSgTEMT01601525 239 0.5358 (1511/2820) 0 * Os_TE_864910 Os_TE_864906 Chr1 43143611 43143610 - OSTE24 683 0.0714 (198/2775) 0 * * Os_TE_864901 Chr1 43141717 43141718 - CASTAWAY 364 0.0028 (4/1404) 0 * Os_TE_864900 Os_TE_864900 Chr1 43141715 43141714 + ORSgTEMT00600229 360 0.0028 (4/1413) 0 * Os_TE_864901 Os_TE_864899 Chr1 43141025 43141024 - ORSgTEMT00101174 225 0.5432 (1584/2916) 0 * Os_TE_864898 Os_TE_864898 Chr1 43141024 43141025 - STOWAWAY10_OS 259 0.4640 (1173/2528) 0 * Os_TE_864899 Os_TE_864897 Chr1 43140737 43140738 + ORSgTETNOOT02019 240 0.0814 (238/2924) 0 * * Os_TE_864896 Chr1 43140473 43140474 - STOWAWAY13_OS 251 0.5257 (1483/2821) 0 * * Os_TE_864894 Chr1 43140375 43140374 - ORSgTEMT00101174 225 0.5380 (1542/2866) 0 * * Os_TE_864893 Chr1 43139887 43139746 + ORSgTEMT00500934 143 0.4628 (1367/2954) 1 Intact * Os_TE_864879 Chr1 43134728 43134729 + ORSgTEMT00900319 250 0.0036 (5/1391) 0 * * Os_TE_864874 Chr1 43130392 43130393 - SC-8_LTR 4951 0.0003 (1/2980) 0 * Os_TE_864873 Os_TE_864873 Chr1 43130388 43130387 + ORSiTERTOOT00381 4988 0.0003 (1/2983) 0 * Os_TE_864874 Os_TE_864851 Chr1 43117554 43117555 + TELIA 141 0.0024 (7/2930) 0 * Os_TE_864850 Os_TE_864850 Chr1 43117546 43117545 - TELIA 141 0.0020 (6/2930) 0 * Os_TE_864851 Os_TE_864846 Chr1 43109529 43109528 - COPI2_LTR 4733 0.0014 (4/2948) 0 * * Os_TE_864845 Chr1 43108555 43108556 - ORSgTEMT01602404 253 0.0003 (1/2965) 0 * * Os_TE_864833 Chr1 43106369 43106370 + TWIF 586 0.0003 (1/2993) 0 * * Os_TE_864822 Chr1 43103579 43103580 + CLOUD 734 0.5615 (1656/2949) 0 * Os_TE_864821 Os_TE_864821 Chr1 43103571 43103570 - CLOUD 734 0.5410 (1545/2856) 0 * Os_TE_864822 Os_TE_864796 Chr1 43095498 43095499 + SZ-62LTR 3649 0.0007 (2/2915) 0 * Os_TE_864795 Os_TE_864795 Chr1 43095494 43095493 - SZ-62LTR 3649 0.0007 (2/2968) 0 * Os_TE_864796 Os_TE_864792 Chr1 43094151 43094152 - MuDR2_OS 6770 0.0064 (18/2802) 0 * * Os_TE_864790 Chr1 43094094 43093486 - JOUZHENA 607 0.5989 (1681/2807) 1 Intact Os_TE_864789 Os_TE_864789 Chr1 43093486 43094094 + JOUZHENA 607 0.5712 (1504/2633) 1 Intact Os_TE_864790 Os_TE_864750 Chr1 43065538 43065539 - KIDDOC 275 0.0070 (21/2991) 0 * Os_TE_864749 Os_TE_864749 Chr1 43065534 43065533 + KIDDOC 275 0.0070 (21/2992) 0 * Os_TE_864750 Os_TE_864748 Chr1 43065481 43065482 + MPING 430 0.0003 (1/2989) 0 * Os_TE_864747 Os_TE_864747 Chr1 43065479 43065478 - MPING 430 0.0003 (1/2997) 0 * Os_TE_864748 Os_TE_864742 Chr1 43063005 43063004 + STOWAWAY51_OS 246 0.0003 (1/2980) 0 * Os_TE_864741 Os_TE_864741 Chr1 43062999 43063000 + ORSgTEMT01601591 242 0.0003 (1/2981) 0 * Os_TE_864742 Os_TE_864739 Chr1 43062922 43062921 + MPING 430 0.0037 (11/2985) 0 * * Os_TE_864723 Chr1 43061005 43061006 + MPING 430 0.0003 (1/2966) 0 * Os_TE_864722 Os_TE_864722 Chr1 43061003 43061002 - MPING 430 0.0003 (1/2970) 0 * Os_TE_864723 Os_TE_864718 Chr1 43059578 43059577 - ORSgTEMT01601432 239 0.6401 (1873/2926) 0 * Os_TE_864717 Os_TE_864717 Chr1 43059574 43059575 + ORSgTEMT01602181 239 0.6320 (1798/2845) 0 * Os_TE_864718 Os_TE_864715 Chr1 43059237 43059238 - RIRE2_LTR 11306 0.0003 (1/2980) 0 * * Os_TE_864675 Chr1 43039301 43026345 - RETRO2_LTR 12874 0.3560 (1041/2924) 1 Intact Os_TE_864666 Os_TE_864666 Chr1 43026353 43039301 + ORSgTERTOOT00073 12806 0.3605 (1051/2915) 1 Intact Os_TE_864675 Os_TE_864651 Chr1 43020921 43020922 - ORSgTEMT00700002 381 0.0003 (1/2895) 0 * * Os_TE_864610 Chr1 43010836 42987200 + SPMLIKE 10989 0.0395 (116/2939) 1 Intact * Os_TE_864603 Chr1 42986961 42986960 - CACTA-H 1152 0.0881 (258/2930) 0 * * Os_TE_864601 Chr1 42986394 42986393 - TELIA 141 0.0004 (1/2777) 0 * * Os_TE_864586 Chr1 42969241 42969242 + BUHUI 375 0.0013 (4/2991) 0 * Os_TE_864585 Os_TE_864585 Chr1 42969239 42969238 - ORSgTEMT03800066 376 0.0013 (4/2990) 0 * Os_TE_864586 Os_TE_864548 Chr1 42953578 42953579 + NDNA1TNA_OS 334 0.0926 (275/2971) 0 * Os_TE_864547 Os_TE_864547 Chr1 42953576 42953575 - NDNA1TNA_OS 334 0.0925 (275/2972) 0 * Os_TE_864548 Os_TE_864527 Chr1 42941562 42934070 + RIREX_LTR 8828 0.0434 (130/2997) 1 Intact Os_TE_864525 Os_TE_864525 Chr1 42934068 42941562 - RIREX_LTR 8828 0.0424 (127/2998) 1 Intact Os_TE_864527 Os_TE_864508 Chr1 42930236 42930237 + ORSgTETNOOT02316 263 0.4788 (1422/2970) 0 * * Os_TE_864500 Chr1 42928602 42928601 - RETRO1_LTR 8314 0.3923 (1173/2990) 0 * * Os_TE_864414 Chr1 42885144 42885145 + RIREX_LTR 8828 0.0017 (5/2893) 0 * Os_TE_864413 Os_TE_864413 Chr1 42885140 42885139 - RIREX_LTR 8828 0.0017 (5/2915) 0 * Os_TE_864414 Os_TE_864412 Chr1 42884913 42884914 + OSCOPIA2_LTR 5476 0.0003 (1/2906) 0 * Os_TE_864411 Os_TE_864411 Chr1 42884909 42884908 - OSCOPIA2_LTR 5476 0.0003 (1/2903) 0 * Os_TE_864412 Os_TE_864386 Chr1 42873239 42873240 + SZ-9LTR 965 0.0853 (251/2941) 0 * Os_TE_864385 Os_TE_864385 Chr1 42873233 42873232 - SZ-9LTR 965 0.0917 (271/2955) 0 * Os_TE_864386 Os_TE_864349 Chr1 42850511 42850512 - SC-3_LTR 5748 0.0003 (1/2987) 0 * Os_TE_864348 Os_TE_864348 Chr1 42850507 42850506 + ORSiTERTOOT00296 5553 0.0003 (1/2990) 0 * Os_TE_864349 Os_TE_864338 Chr1 42844575 42844576 - SC-8_LTR 4951 0.0010 (3/2993) 0 * Os_TE_864337 Os_TE_864337 Chr1 42844571 42844570 + SC-8_LTR 4951 0.0010 (3/2993) 0 * Os_TE_864338 Os_TE_864321 Chr1 42829008 42829009 - MPING 430 0.0003 (1/2948) 0 * Os_TE_864320 Os_TE_864320 Chr1 42829006 42829005 + MPING 430 0.0003 (1/2932) 0 * Os_TE_864321 Os_TE_864283 Chr1 42801104 42801103 + AMYLTP 383 0.0580 (145/2499) 0 * * Os_TE_864274 Chr1 42799161 42799162 + RIREX_LTR 8828 0.0004 (1/2852) 0 * Os_TE_864273 Os_TE_864273 Chr1 42799157 42799156 - RIREX_LTR 8828 0.0004 (1/2313) 0 * Os_TE_864274 Os_TE_864269 Chr1 42798586 42798364 + ORSgTEMT02400014 229 0.7619 (2256/2961) 1 Intact * Os_TE_864210 Chr1 42769685 42769684 + MPING 430 0.0004 (1/2719) 0 * * Os_TE_864208 Chr1 42768987 42768986 + ORSgTEMT00700017 386 0.0248 (23/926) -1 * * Os_TE_864199 Chr1 42767301 42767302 + COPI2_LTR 4733 0.0007 (2/2795) 0 * Os_TE_864198 Os_TE_864198 Chr1 42767297 42767296 - COPI2_LTR 4733 0.0007 (2/2803) 0 * Os_TE_864199 Os_TE_864179 Chr1 42760806 42760807 + CLOUD-4 520 0.0004 (1/2327) -1 * * Os_TE_864149 Chr1 42744896 42744660 + STOWAWAY21_OS 243 0.8227 (2371/2882) 1 Intact * Os_TE_864133 Chr1 42742428 42742429 - TYPEM 227 0.1028 (304/2957) 0 * * Os_TE_864131 Chr1 42742321 42742322 + SETARIA2 1142 0.0420 (125/2975) 0 * Os_TE_864130 Os_TE_864130 Chr1 42742315 42742314 + SETARIA 1402 0.0362 (107/2952) 0 * Os_TE_864131 Os_TE_864122 Chr1 42738785 42738786 + TELIA 141 0.0017 (5/2980) 0 * Os_TE_864121 Os_TE_864121 Chr1 42738777 42738776 - TELIA 141 0.0017 (5/2979) 0 * Os_TE_864122 Os_TE_864116 Chr1 42737908 42737907 + ORSgTETNOOT00908 242 0.0506 (151/2987) 0 * * Os_TE_864110 Chr1 42732861 42732862 - RIREX_LTR 8828 0.0003 (1/2994) 0 * Os_TE_864109 Os_TE_864109 Chr1 42732857 42732856 + RIREX_LTR 8828 0.0003 (1/2993) 0 * Os_TE_864110 Os_TE_864106 Chr1 42732486 42732487 - ORSgTEMT01601432 239 0.0003 (1/2972) 0 * * Os_TE_864105 Chr1 42731481 42731482 - RETRO2_LTR 12874 0.0003 (1/2880) 0 * Os_TE_864104 Os_TE_864104 Chr1 42731477 42731476 + ORSgTERTOOT00009 12852 0.0003 (1/2864) 0 * Os_TE_864105 Os_TE_864103 Chr1 42731213 42731214 - AMYLTP 383 0.0003 (1/2900) 0 * * Os_TE_864078 Chr1 42718488 42718487 - STOWAWAY51_OS 246 0.0003 (1/2959) 0 * * Os_TE_864075 Chr1 42716307 42716308 - SC-4_LTR 5218 0.0003 (1/2996) 0 * Os_TE_864074 Os_TE_864074 Chr1 42716303 42716302 + SC-4_LTR 5218 0.0003 (1/2996) 0 * Os_TE_864075 Os_TE_864073 Chr1 42715689 42715690 - TELIA 141 0.0428 (128/2993) 0 * Os_TE_864072 Os_TE_864072 Chr1 42715681 42715680 + TELIA 141 0.0418 (125/2990) 0 * Os_TE_864073 Os_TE_864060 Chr1 42708541 42708542 - RIREX_LTR 8828 0.0504 (125/2480) 0 * Os_TE_864059 Os_TE_864059 Chr1 42708537 42708536 + RIREX_LTR 8828 0.0415 (122/2940) 0 * Os_TE_864060 Os_TE_864053 Chr1 42703910 42703911 - ORSgTEMT01601432 239 0.8296 (2362/2847) 0.93 * * Os_TE_864051 Chr1 42703734 42703733 - AMYLTP 383 0.4115 (772/1876) 0 * * Os_TE_864045 Chr1 42702663 42702664 - RIREX_LTR 8828 0.0149 (38/2549) 0 * * Os_TE_864039 Chr1 42701874 42701503 - TYPEU1 380 0.3637 (1089/2994) 1 Intact Os_TE_864038 Os_TE_864038 Chr1 42701502 42701857 + TYPEU2 382 0.2654 (698/2630) 1 Intact Os_TE_864039 Os_TE_864033 Chr1 42694800 42693281 + MDR2 6967 0.4660 (1389/2981) 1 Intact * Os_TE_864028 Chr1 42691725 42691726 - SC-3_LTR 5748 0.0003 (1/2995) 0 * Os_TE_864027 Os_TE_864027 Chr1 42691721 42691720 + ORSiTERTOOT00296 5553 0.0003 (1/2995) 0 * Os_TE_864028 Os_TE_864020 Chr1 42684936 42684937 - ORSiTETNOOT00200 3563 0.0257 (72/2803) 0 * Os_TE_864019 Os_TE_864019 Chr1 42684929 42684928 + TWIF 586 0.0278 (81/2918) 0 * Os_TE_864020 Os_TE_864006 Chr1 42674990 42674991 - RETROSAT4_LTR 13504 0.1641 (210/1280) 0 * Os_TE_864005 Os_TE_864005 Chr1 42674986 42674985 + RETROSAT4_LTR 13504 0.1611 (206/1279) 0 * Os_TE_864006 Os_TE_864004 Chr1 42672921 42672920 + TWIFB1 3737 0.0007 (1/1465) 0 * * Os_TE_863997 Chr1 42671937 42671938 + TWIFB1 3737 0.0008 (1/1284) 0 * * Os_TE_863992 Chr1 42669798 42669797 + SC-8_LTR 4951 0.0008 (1/1293) 0 * * Os_TE_863974 Chr1 42645005 42645004 + RETRO2A_LTR 12895 0.0024 (7/2960) 0 * * Os_TE_863968 Chr1 42642542 42642783 - ORSiTEMT01000008 242 0.5385 (1593/2958) 1 Intact * Os_TE_863967 Chr1 42642390 42642389 - STOWAWAY51_OS 246 0.0027 (8/2948) 0 * Os_TE_863966 Os_TE_863966 Chr1 42642384 42642385 + STOWAWAY51_OS 246 0.0037 (11/2949) 0 * Os_TE_863967 Os_TE_863965 Chr1 42642364 42642365 - MPING 430 0.0044 (13/2935) 0 * Os_TE_863964 Os_TE_863964 Chr1 42642362 42642361 + MPING 430 0.0044 (13/2936) 0 * Os_TE_863965 Os_TE_863962 Chr1 42641988 42641609 - AMYLTP 383 0.5398 (1575/2918) 1 Intact * Os_TE_863953 Chr1 42638564 42638563 + TRUNCATOR 2918 0.1717 (513/2987) 0 * * Os_TE_863952 Chr1 42638367 42638366 - RIREX_LTR 8828 0.0420 (125/2979) 0 * * Os_TE_863947 Chr1 42636465 42636464 - RIREX_LTR 8828 0.0108 (31/2879) 0 * * Os_TE_863945 Chr1 42635543 42635544 + ORSiTERT00100080 6173 0.0003 (1/2907) 0 * * Os_TE_863940 Chr1 42634805 42635068 + STOWAWAY45_OS 266 0.8357 (2258/2702) 1 Intact * Os_TE_863938 Chr1 42633980 42633979 - TREP215 239 0.0003 (1/2977) 0 * * Os_TE_863936 Chr1 42633027 42633026 + ORSgTEMT02400041 225 0.1593 (467/2932) 0 * * Os_TE_863934 Chr1 42631819 42631818 + COPIA2-LTR_OS 6433 0.0004 (1/2649) 0 * * Os_TE_863932 Chr1 42630456 42630455 + COPI2_LTR 4733 0.0003 (1/2991) 0 * * Os_TE_863912 Chr1 42613334 42613335 - ORSgTEMT01600223 220 0.1744 (451/2586) 0 * Os_TE_863911 Os_TE_863911 Chr1 42613329 42613328 - ORSgTEMT01600639 228 0.1613 (412/2554) 0 * Os_TE_863912 Os_TE_863910 Chr1 42613326 42613327 + ORSgTEMT01601829 236 0.1776 (459/2585) 0 * * Os_TE_863908 Chr1 42613258 42612916 - ORSgTEMT00101466 345 0.8284 (2148/2593) 1 Intact Os_TE_863905 Os_TE_863905 Chr1 42612917 42613257 + ORSgTEMT00101583 342 0.8762 (2010/2294) 1 Intact Os_TE_863908 Os_TE_863903 Chr1 42612696 42612493 - F569 228 0.8606 (2506/2912) 1 Intact * Os_TE_863896 Chr1 42607929 42608162 - STOWAWAY9_OS 235 0.8488 (2521/2970) 1 Intact * Os_TE_863883 Chr1 42599670 42599669 + SINE03_OS 360 0.1561 (462/2959) 0 * * Os_TE_863866 Chr1 42586545 42586782 - ORSgTEMT01601208 238 0.8711 (2540/2916) 1 Intact * Os_TE_863855 Chr1 42574888 42574887 + ORSgTEMT01602181 239 0.0388 (116/2990) 0 * * Os_TE_863848 Chr1 42574285 42574284 + ORSgTETNOOT01668 244 0.0473 (135/2854) 0 * * Os_TE_863836 Chr1 42569084 42569083 - SC-8_LTR 4951 0.0013 (4/2997) 0 * * Os_TE_863826 Chr1 42566980 42566979 - STOWAWAY51_OS 246 0.0386 (115/2982) 0 * * Os_TE_863819 Chr1 42562287 42562288 + RIREX_LTR 8828 0.0052 (4/772) 0 * * Os_TE_863783 Chr1 42550125 42550126 - SC-8_LTR 4951 0.0017 (5/2997) 0 * Os_TE_863782 Os_TE_863782 Chr1 42550121 42550120 + SC-8_LTR 4951 0.0017 (5/2996) 0 * Os_TE_863783 Os_TE_863757 Chr1 42539222 42539223 - STOWAWAY1_OS 149 0.0385 (115/2987) 0 * * Os_TE_863739 Chr1 42534092 42534093 + RIREX_LTR 8828 0.0057 (17/2976) 0 * Os_TE_863738 Os_TE_863738 Chr1 42534088 42534087 - RIREX_LTR 8828 0.0061 (18/2975) 0 * Os_TE_863739 Os_TE_863737 Chr1 42533027 42533028 + SC-4_LTR 5218 0.0312 (93/2982) 0 * Os_TE_863736 Os_TE_863736 Chr1 42533023 42533022 - SC-4_LTR 5218 0.0315 (94/2984) 0 * Os_TE_863737 Os_TE_863729 Chr1 42527256 42527257 - RETROSAT2LTR 12796 0.0315 (92/2924) 0 * * Os_TE_863726 Chr1 42527004 42527005 - RETROSAT2LTR 12796 0.1479 (441/2982) 0 * * Os_TE_863720 Chr1 42524206 42522159 + HELITRON7_OS 10153 0.2041 (584/2862) 1 Intact * Os_TE_863687 Chr1 42488379 42488378 - COPIA2-LTR_OS 6433 0.0008 (2/2424) 0 * * Os_TE_863686 Chr1 42488198 42488197 - RETROSAT2LTR 12796 0.0242 (52/2150) 0 * * Os_TE_863672 Chr1 42480111 42480112 - MPING 430 0.0003 (1/2996) 0 * Os_TE_863671 Os_TE_863671 Chr1 42480109 42480108 + MPING 430 0.0003 (1/2997) 0 * Os_TE_863672 Os_TE_863647 Chr1 42472659 42472660 + RIRE2_LTR 11306 0.0022 (6/2766) 0 * * Os_TE_863642 Chr1 42471267 42471268 + COPI2_LTR 4733 0.0007 (2/2725) 0 * Os_TE_863641 Os_TE_863641 Chr1 42471263 42471262 - COPI2_LTR 4733 0.0015 (4/2629) 0 * Os_TE_863642 Os_TE_863640 Chr1 42469544 42469545 + MPING 430 0.0003 (1/2990) 0 * Os_TE_863639 Os_TE_863639 Chr1 42469542 42469541 - MPING 430 0.0003 (1/2991) 0 * Os_TE_863640 Os_TE_863638 Chr1 42469424 42469425 - COPI2_LTR 4733 0.0003 (1/2943) 0 * Os_TE_863637 Os_TE_863637 Chr1 42469420 42469419 + COPI2_LTR 4733 0.0003 (1/2954) 0 * Os_TE_863638 Os_TE_863622 Chr1 42468116 42468115 + ORSgTEMT00502094 140 0.0391 (117/2991) 0 * * Os_TE_863584 Chr1 42459761 42459760 + ORSgTEMT00500578 129 0.0405 (119/2935) 0 * * Os_TE_863578 Chr1 42456111 42456562 - MICROPON-LIKE-1 428 0.6078 (1401/2305) 1 Intact * Os_TE_863569 Chr1 42448416 42448417 + SC-8_LTR 4951 0.0003 (1/2999) 0 * Os_TE_863568 Os_TE_863568 Chr1 42448412 42448411 - SC-8_LTR 4951 0.0003 (1/2999) 0 * Os_TE_863569 Os_TE_863564 Chr1 42445523 42445524 + RETROSAT2LTRA 3112 0.4980 (1489/2990) 0 * Os_TE_863563 Os_TE_863563 Chr1 42445519 42445518 - RETROSAT2LTRA 3112 0.4960 (1481/2986) 0 * Os_TE_863564 Os_TE_863558 Chr1 42443769 42443770 + COPI2_LTR 4733 0.0869 (259/2980) 0 * Os_TE_863557 Os_TE_863557 Chr1 42443765 42443764 - COPI2_LTR 4733 0.0844 (250/2961) 0 * Os_TE_863558 Os_TE_863549 Chr1 42441716 42441717 - COPI2_LTR 4733 0.0003 (1/2990) 0 * Os_TE_863548 Os_TE_863548 Chr1 42441712 42441711 + COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_863549 Os_TE_863547 Chr1 42441623 42441624 - ORSiTERT00100062 5674 0.0060 (18/2992) 0 * Os_TE_863546 Os_TE_863546 Chr1 42441619 42441618 + OSTONOR1_LTR 6440 0.0057 (17/2994) 0 * Os_TE_863547 Os_TE_863533 Chr1 42437152 42437153 + SC-8_LTR 4951 0.0003 (1/2972) 0 * Os_TE_863532 Os_TE_863532 Chr1 42437148 42437147 - SC-8_LTR 4951 0.0003 (1/2982) 0 * Os_TE_863533 Os_TE_863527 Chr1 42435761 42435760 + OSTE33 1012 0.0017 (5/2973) 0 * * Os_TE_863526 Chr1 42435665 42435666 + ORSgTETNOOT00908 242 0.0017 (5/2974) 0 * * Os_TE_863512 Chr1 42432409 42432408 + COPIA2-LTR_OS 6433 0.0034 (10/2974) 0 * * Os_TE_863504 Chr1 42428967 42428968 + NDNA1TNA_OS 334 0.0341 (101/2962) 0 * Os_TE_863503 Os_TE_863503 Chr1 42428965 42428964 - NDNA1TNA_OS 334 0.0342 (102/2981) 0 * Os_TE_863504 Os_TE_863483 Chr1 42418746 42418747 + INDITTO 263 0.0007 (2/2688) 0 * Os_TE_863482 Os_TE_863482 Chr1 42418744 42418743 + ORSgTETNOOT02406 265 0.0007 (2/2904) 0 * Os_TE_863483 Os_TE_863481 Chr1 42417038 42417037 - TYPEM 227 0.0027 (8/2988) 0 * Os_TE_863480 Os_TE_863480 Chr1 42417037 42417038 - ORSgTEMT02400148 214 0.0030 (9/2990) 0 * Os_TE_863481 Os_TE_863451 Chr1 42404946 42404947 - HATOS1 3488 0.0425 (101/2375) 0 * Os_TE_863450 Os_TE_863450 Chr1 42404939 42404938 - MIDWAY 985 0.0541 (134/2476) 0 * Os_TE_863451 Os_TE_863448 Chr1 42403812 42403811 + F569 228 0.0004 (1/2616) 0 * * Os_TE_863440 Chr1 42400511 42400512 + ORSiTERT00200145 12238 0.0004 (1/2637) 0 * Os_TE_863439 Os_TE_863439 Chr1 42400507 42400506 - SZ-67LTR 1540 0.0004 (1/2636) 0 * Os_TE_863440 Os_TE_863432 Chr1 42389311 42389312 + RETRO2A_LTR 12895 0.0007 (2/2743) 0 * Os_TE_863431 Os_TE_863431 Chr1 42389307 42389306 - RETRO2_LTR 12874 0.0007 (2/2811) 0 * Os_TE_863432 Os_TE_863401 Chr1 42380826 42380683 - ORSgTEMT00500026 147 0.8779 (2624/2989) 1 Intact * Os_TE_863396 Chr1 42380176 42380175 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * * Os_TE_863394 Chr1 42378343 42378344 + TRUNCATOR2_LTR 2904 0.0007 (2/2998) 0 * Os_TE_863393 Os_TE_863393 Chr1 42378339 42378338 - TRUNCATOR2_LTR 2904 0.0007 (2/2998) 0 * Os_TE_863394 Os_TE_863390 Chr1 42376866 42376865 - STOWAWAY51_OS 246 0.0004 (1/2648) 0 * Os_TE_863389 Os_TE_863389 Chr1 42376860 42376861 + STOWAWAY51_OS 246 0.0004 (1/2646) 0 * Os_TE_863390 Os_TE_863387 Chr1 42376638 42376637 - DNAUN1_OS 408 0.0532 (139/2611) 0 * * Os_TE_863380 Chr1 42373358 42372111 - OSTE21 1271 0.8129 (2034/2502) -1 Intact Os_TE_863377 Os_TE_863377 Chr1 42372111 42373352 + OSTE21 1271 0.8601 (2497/2903) 1 Intact Os_TE_863380 Os_TE_863375 Chr1 42371519 42371518 + COPIA2-LTR_OS 6433 0.0003 (1/2952) 0 * * Os_TE_863371 Chr1 42369404 42369405 - AMYLTP 383 0.0395 (118/2988) 0 * Os_TE_863370 Os_TE_863370 Chr1 42369396 42369395 + AMYLTP 383 0.0401 (120/2991) 0 * Os_TE_863371 Os_TE_863369 Chr1 42369237 42369238 + STOWAWAY43_OS 233 0.0017 (5/2964) 0 * * Os_TE_863356 Chr1 42367628 42367627 + ORSgTEMT01602119 229 0.0017 (5/2993) 0 * * Os_TE_863355 Chr1 42367492 42367493 - RIREX_LTR 8828 0.0030 (8/2630) 0 * Os_TE_863354 Os_TE_863354 Chr1 42367488 42367487 + RIREX_LTR 8828 0.0027 (8/2992) 0 * Os_TE_863355 Os_TE_863348 Chr1 42366063 42366265 + ORSgTEMT01601122 212 0.8836 (2597/2939) 1 Intact * Os_TE_863339 Chr1 42361188 42361189 + ORSiTERTOOT00296 5553 0.0003 (1/2920) 0 * Os_TE_863338 Os_TE_863338 Chr1 42361184 42361183 - SC-3_LTR 5748 0.0003 (1/2941) 0 * Os_TE_863339 Os_TE_863334 Chr1 42356952 42356951 + STOWAWAY11_OS 292 0.1439 (385/2675) 0 * * Os_TE_863327 Chr1 42352510 42352511 - SC-3_LTR 5748 0.0012 (3/2513) 0 * Os_TE_863326 Os_TE_863326 Chr1 42352506 42352505 + ORSiTERTOOT00296 5553 0.0008 (2/2521) 0 * Os_TE_863327 Os_TE_863325 Chr1 42352317 42352318 - SC-8_LTR 4951 0.0007 (2/2993) 0 * Os_TE_863324 Os_TE_863324 Chr1 42352313 42352312 + SC-8_LTR 4951 0.0007 (2/2996) 0 * Os_TE_863325 Os_TE_863322 Chr1 42351688 42351689 + SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_863321 Os_TE_863321 Chr1 42351684 42351683 - SC-8_LTR 4951 0.0003 (1/2989) 0 * Os_TE_863322 Os_TE_863320 Chr1 42351332 42351333 + DS-RICE2N 613 0.0950 (284/2991) 0 * Os_TE_863319 Os_TE_863319 Chr1 42351325 42351324 - DS-RICE2N 613 0.0930 (278/2990) 0 * Os_TE_863320 Os_TE_863314 Chr1 42350373 42350566 - ORSiTEMT02200001 210 0.8386 (2484/2962) 1 Intact * Os_TE_863310 Chr1 42348757 42348758 - SC-8_LTR 4951 0.0003 (1/2993) 0 * Os_TE_863309 Os_TE_863309 Chr1 42348753 42348752 + SC-8_LTR 4951 0.0003 (1/2993) 0 * Os_TE_863310 Os_TE_863307 Chr1 42347303 42347304 - SC-3_LTR 5748 0.0003 (1/2989) 0 * Os_TE_863306 Os_TE_863306 Chr1 42347299 42347298 + ORSiTERTOOT00296 5553 0.0003 (1/2992) 0 * Os_TE_863307 Os_TE_863293 Chr1 42337048 42337285 + TREP215 239 0.8590 (2339/2723) 1 Intact * Os_TE_863280 Chr1 42332469 42332470 - STOWAWAY1_OS 149 0.0414 (124/2993) 0 * * Os_TE_863261 Chr1 42322342 42322343 - COPIA2-LTR_OS 6433 0.0004 (1/2663) 0 * Os_TE_863260 Os_TE_863260 Chr1 42322338 42322337 + COPIA2-LTR_OS 6433 0.0004 (1/2665) 0 * Os_TE_863261 Os_TE_863247 Chr1 42320130 42320131 - HARB-1_OS 5166 0.0007 (2/2978) 0 * Os_TE_863246 Os_TE_863246 Chr1 42320128 42320127 + HARB-1_OS 5166 0.0007 (2/2980) 0 * Os_TE_863247 Os_TE_863233 Chr1 42303602 42303603 - SC-1_LTR 6888 0.1476 (440/2982) 0 * Os_TE_863232 Os_TE_863232 Chr1 42303598 42303597 + SC-1_LTR 6888 0.1481 (442/2985) 0 * Os_TE_863233 Os_TE_863190 Chr1 42285267 42283872 + OSTE33 1012 0.6339 (1799/2838) 1 Intact Os_TE_863188 Os_TE_863188 Chr1 42283872 42285267 + OSTE33 1012 0.6480 (1885/2909) 1 Intact Os_TE_863190 Os_TE_863163 Chr1 42260235 42260234 - STOWAWAY51_OS 246 0.0902 (267/2959) 0 * Os_TE_863162 Os_TE_863162 Chr1 42260229 42260230 + STOWAWAY51_OS 246 0.0964 (284/2946) 0 * Os_TE_863163 Os_TE_863093 Chr1 42240288 42240289 + ORSgTETNOOT01219 231 0.0570 (153/2685) 0 * Os_TE_863092 Os_TE_863092 Chr1 42240282 42240281 + ORSgTETNOOT00908 242 0.0570 (154/2700) 0 * Os_TE_863093 Os_TE_863069 Chr1 42229963 42229962 + ORSiTERT00200154 9386 0.0006 (1/1682) -1 * * Os_TE_863014 Chr1 42213772 42213773 - ORSgTETN00200001 10994 0.0003 (1/2985) 0 * Os_TE_863013 Os_TE_863013 Chr1 42213770 42213769 + SPMLIKE 10989 0.0003 (1/2990) 0 * Os_TE_863014 Os_TE_863011 Chr1 42212853 42212852 + COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * * Os_TE_862966 Chr1 42198072 42198073 - RETROSAT2LTRA 3112 0.0836 (238/2848) 0 * * Os_TE_862956 Chr1 42196311 42196312 - COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_862955 Os_TE_862955 Chr1 42196307 42196306 + COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_862956 Os_TE_862949 Chr1 42188494 42188493 + STOWAWAY44_OS 240 0.0003 (1/2994) 0 * Os_TE_862948 Os_TE_862948 Chr1 42188491 42188492 - STOWAWAY44_OS 240 0.0003 (1/2997) 0 * Os_TE_862949 Os_TE_862947 Chr1 42188235 42188236 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_862946 Os_TE_862946 Chr1 42188231 42188230 - COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_862947 Os_TE_862925 Chr1 42175281 42175280 + COPIA2-LTR_OS 6433 0.0007 (2/2974) 0 * * Os_TE_862917 Chr1 42173927 42174154 - ORSgTEMT01602413 239 0.8541 (2184/2557) 1 Intact * Os_TE_862916 Chr1 42173446 42173207 - ORSgTEMT01602413 239 0.7237 (2132/2946) 1 Intact Os_TE_862914 Os_TE_862914 Chr1 42173207 42173446 + ORSgTEMT01601143 237 0.7142 (2137/2992) 1 Intact Os_TE_862916 Os_TE_862911 Chr1 42173128 42173129 + INDITTO 263 0.0030 (9/2990) 0 * Os_TE_862910 Os_TE_862910 Chr1 42173126 42173125 - INDITTO 263 0.0030 (9/2992) 0 * Os_TE_862911 Os_TE_862909 Chr1 42172887 42172888 + ORSgTETNOOT01219 231 0.1208 (361/2988) 0 * Os_TE_862908 Os_TE_862908 Chr1 42172881 42172880 + ORSgTETNOOT00908 242 0.1227 (367/2991) 0 * Os_TE_862909 Os_TE_862853 Chr1 42145478 42145477 - COPIA2-LTR_OS 6433 0.0004 (1/2305) 0 * * Os_TE_862846 Chr1 42143340 42143339 - NDNA1TNA_OS 334 0.0386 (106/2746) 0 * * Os_TE_862815 Chr1 42132091 42132092 + SC-1_LTR 6888 0.0034 (10/2980) 0 * * Os_TE_862812 Chr1 42130356 42130357 + ORSgTEMT00100531 325 0.2191 (653/2980) 0 * * Os_TE_862810 Chr1 42130298 42130297 - COPIA2-LTR_OS 6433 0.0003 (1/2977) 0 * * Os_TE_862808 Chr1 42128474 42128475 - RIREX_LTR 8828 0.0003 (1/2992) 0 * Os_TE_862807 Os_TE_862807 Chr1 42128470 42128469 + RIREX_LTR 8828 0.0003 (1/2992) 0 * Os_TE_862808 Os_TE_862797 Chr1 42123713 42123712 + TWIF 586 0.0004 (1/2841) 0 * * Os_TE_862782 Chr1 42120064 42120065 + OSTE33 1012 0.0034 (10/2985) 0 * Os_TE_862781 Os_TE_862781 Chr1 42120055 42120054 - OSTE33 1012 0.0030 (9/2985) 0 * Os_TE_862782 Os_TE_862779 Chr1 42119328 42115380 - RETROSAT4_LTR 13504 0.4001 (1182/2954) 1 Solo_LTR Os_TE_862775 Os_TE_862775 Chr1 42115380 42119326 + RETROSAT4_LTR 13504 0.3976 (1167/2935) 1 Solo_LTR Os_TE_862779 Os_TE_862767 Chr1 42113545 42113544 + STOWAWAY51_OS 246 0.0010 (3/2908) 0 * Os_TE_862766 Os_TE_862766 Chr1 42113539 42113540 - STOWAWAY51_OS 246 0.0010 (3/2897) 0 * Os_TE_862767 Os_TE_862754 Chr1 42109306 42109307 + DS-RICE2N 613 0.1761 (525/2982) 0 * Os_TE_862753 Os_TE_862753 Chr1 42109299 42109298 - DS-RICE2N 613 0.1685 (501/2973) 0 * Os_TE_862754 Os_TE_862731 Chr1 42104446 42104445 + RIREX_LTR 8828 0.0010 (3/2935) 0 * * Os_TE_862728 Chr1 42101575 42101576 + RETROSAT4_LTR 13504 0.1104 (328/2970) 0 * Os_TE_862727 Os_TE_862727 Chr1 42101571 42101570 - SZ-35LTR 3853 0.1192 (355/2977) 0 * Os_TE_862728 Os_TE_862647 Chr1 42084620 42084621 + STOWAWAY21_OS 243 0.5740 (1719/2995) 0 * * Os_TE_862644 Chr1 42083419 42084152 - CLOUD 734 0.8822 (2606/2954) 1 Intact * Os_TE_862642 Chr1 42083294 42083295 + NDNA1TNA_OS 334 0.1350 (404/2993) 0 * Os_TE_862641 Os_TE_862641 Chr1 42083292 42083291 - NDNA1TNA_OS 334 0.1278 (374/2926) 0 * Os_TE_862642 Os_TE_862609 Chr1 42072158 42072157 - RPO_OS 1983 0.1155 (334/2892) 0 * * Os_TE_862606 Chr1 42071827 42071828 + SZ-9LTR 965 0.0027 (8/2994) 0 * Os_TE_862605 Os_TE_862605 Chr1 42071823 42071822 - SZ-9LTR 965 0.0030 (9/2990) 0 * Os_TE_862606 Os_TE_862604 Chr1 42071660 42071661 - RETROSAT2LTR 12796 0.0003 (1/2963) 0 * * Os_TE_862602 Chr1 42071323 42071322 - STOWAWAY51_OS 246 0.0010 (3/2992) 0 * * Os_TE_862593 Chr1 42069955 42069954 - ORSgTEMT02000041 194 0.0322 (96/2983) 0 * * Os_TE_862583 Chr1 42066512 42066511 + ORSgTEMT01601591 242 0.0003 (1/2991) 0 * Os_TE_862582 Os_TE_862582 Chr1 42066506 42066507 + STOWAWAY51_OS 246 0.0003 (1/2985) 0 * Os_TE_862583 Os_TE_862571 Chr1 42059571 42059572 + SZ-9LTR 965 0.0003 (1/2995) 0 * Os_TE_862570 Os_TE_862570 Chr1 42059567 42059566 - SZ-9LTR 965 0.0003 (1/2997) 0 * Os_TE_862571 Os_TE_862565 Chr1 42057394 42057393 - ORSgTETNOOT01413 258 0.0007 (2/2999) 0 * * Os_TE_862557 Chr1 42054506 42054507 + CASTAWAY-3 314 0.0013 (4/2963) 0 * * Os_TE_862555 Chr1 42053308 42053309 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_862554 Os_TE_862554 Chr1 42053304 42053303 - COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_862555 Os_TE_862549 Chr1 42051836 42051835 + TELIA 141 0.0003 (1/2991) 0 * * Os_TE_862548 Chr1 42051805 42051806 - MPING 430 0.0013 (4/2995) 0 * Os_TE_862547 Os_TE_862547 Chr1 42051803 42051802 + MPING 430 0.0013 (4/2992) 0 * Os_TE_862548 Os_TE_862532 Chr1 42047866 42047867 + COPIA2-LTR_OS 6433 0.0007 (2/2988) 0 * Os_TE_862531 Os_TE_862531 Chr1 42047862 42047861 - COPIA2-LTR_OS 6433 0.0007 (2/2985) 0 * Os_TE_862532 Os_TE_862504 Chr1 42039822 42039823 - COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_862503 Os_TE_862503 Chr1 42039818 42039817 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_862504 Os_TE_862502 Chr1 42039462 42039463 - SZ-22_LTR 4403 0.0003 (1/2997) 0 * Os_TE_862501 Os_TE_862501 Chr1 42039458 42039457 + ORSiTERTOOT00226 792 0.0003 (1/2997) 0 * Os_TE_862502 Os_TE_862493 Chr1 42034245 42034246 - NDNA1TNA_OS 334 0.0067 (20/2988) 0 * Os_TE_862492 Os_TE_862492 Chr1 42034243 42034242 + NDNA1TNA_OS 334 0.0074 (22/2983) 0 * Os_TE_862493 Os_TE_862477 Chr1 42030633 42030632 + ORSgTEMT01400031 216 0.6388 (1896/2968) 0 * * Os_TE_862465 Chr1 42028633 42028632 - ORSgTEMT02400148 214 0.1155 (307/2658) 0 * Os_TE_862464 Os_TE_862464 Chr1 42028629 42028630 + ORSgTEMT02400034 225 0.1208 (322/2666) 0 * Os_TE_862465 Os_TE_862448 Chr1 42023726 42023727 + TNR2A 152 0.3705 (1109/2993) 0 * Os_TE_862447 Os_TE_862447 Chr1 42023711 42023710 + TNR2A 152 0.3662 (1096/2993) 0 * Os_TE_862448 Os_TE_862444 Chr1 42023231 42023232 + RETROFIT6_LTR 4799 0.0350 (105/2998) 0 * * Os_TE_862435 Chr1 42017665 42017666 + NDNA1TNA_OS 334 0.0756 (225/2975) 0 * * Os_TE_862415 Chr1 42014152 42014153 - TRUNCATOR2_LTR 2904 0.0946 (276/2918) 0 * * Os_TE_862414 Chr1 42013798 42013797 + ORSgTEMT00600360 369 0.0671 (201/2995) 0 * * Os_TE_862406 Chr1 42011771 42011770 + ORSgTEMT01400009 212 0.0014 (4/2954) 0 * * Os_TE_862397 Chr1 42010768 42010769 - MuDR3_OS 8604 0.1843 (544/2951) 0 * Os_TE_862396 Os_TE_862396 Chr1 42010760 42010759 - MuDR3_OS 8604 0.1804 (532/2949) 0 * Os_TE_862397 Os_TE_862392 Chr1 42009807 42009806 + CLOUD-7 495 0.3638 (1085/2982) 0 * * Os_TE_862384 Chr1 42006271 42006272 + SNAP-OL2 175 0.0017 (5/2996) 0 * Os_TE_862383 Os_TE_862383 Chr1 42006265 42006264 + SNAP-OL3 189 0.0017 (5/2996) 0 * Os_TE_862384 Os_TE_862381 Chr1 42005496 42005497 - TREP215 239 0.0017 (5/2990) 0 * Os_TE_862380 Os_TE_862380 Chr1 42005494 42005493 - ORSgTEMT01600559 234 0.0017 (5/2991) 0 * Os_TE_862381 Os_TE_862343 Chr1 41990012 41990011 + TRUNCATOR 2918 0.0012 (3/2518) 0 * Os_TE_862342 Os_TE_862342 Chr1 41990011 41990012 - TRUNCATOR 2918 0.0016 (4/2516) 0 * Os_TE_862343 Os_TE_862341 Chr1 41989661 41989662 + RETRO2A_LTR 12895 0.0329 (83/2525) 0 * Os_TE_862340 Os_TE_862340 Chr1 41989657 41989656 - RETRO1_LTR 8314 0.0316 (80/2530) 0 * Os_TE_862341 Os_TE_862338 Chr1 41987379 41987380 + RETROSAT2LTR 12796 0.1326 (334/2519) 0 * Os_TE_862337 Os_TE_862337 Chr1 41987377 41987376 - RETROSAT2LTR 12796 0.1352 (341/2522) 0 * Os_TE_862338 Os_TE_862335 Chr1 41985838 41985839 - COPI2_LTR 4733 0.0012 (3/2523) 0 * Os_TE_862334 Os_TE_862334 Chr1 41985834 41985833 + COPI2_LTR 4733 0.0004 (1/2522) 0 * Os_TE_862335 Os_TE_862332 Chr1 41984710 41984711 + TWIFB1 3737 0.0069 (19/2759) 0 * * Os_TE_862330 Chr1 41983558 41983559 + ORSiTERTOOT00033 4884 0.0003 (1/2995) 0 * Os_TE_862329 Os_TE_862329 Chr1 41983555 41983554 - RETROFIT_LTR 4866 0.0003 (1/2997) 0 * Os_TE_862330 Os_TE_862327 Chr1 41982174 41982173 + TWIFB1 3737 0.0003 (1/2971) 0 * * Os_TE_862326 Chr1 41982013 41982014 + MERMITEJ 1498 0.0078 (21/2679) 0 * Os_TE_862325 Os_TE_862325 Chr1 41982005 41982004 + MERMITEJ 1498 0.0077 (23/2990) 0 * Os_TE_862326 Os_TE_862314 Chr1 41980332 41980533 - STOWAWAY9_OS 235 0.8896 (2618/2943) 1 Intact * Os_TE_862308 Chr1 41979412 41979581 + ORSgTEMT01701015 166 0.8765 (2363/2696) 1 Intact * Os_TE_862306 Chr1 41978768 41978767 - INDITTO 263 0.0007 (2/2985) 0 * * Os_TE_862305 Chr1 41978531 41978532 + MPING 430 0.0008 (2/2496) 0 * Os_TE_862304 Os_TE_862304 Chr1 41978529 41978528 - MPING 430 0.0008 (2/2495) 0 * Os_TE_862305 Os_TE_862297 Chr1 41974969 41974731 - ORSgTEMT01600750 238 0.8874 (2553/2877) 1 Intact Os_TE_862295 Os_TE_862295 Chr1 41974731 41974968 - TREP215 239 0.8884 (2619/2948) 1 Intact Os_TE_862297 Os_TE_862279 Chr1 41971576 41971575 - TYPEM 227 0.0054 (13/2405) 0 * Os_TE_862278 Os_TE_862278 Chr1 41971575 41971576 - ORSgTEMT02400246 177 0.0062 (13/2085) 0 * Os_TE_862279 Os_TE_862275 Chr1 41968360 41968361 + ORSiTERTOOT00333 4719 0.0629 (188/2988) 0 * Os_TE_862274 Os_TE_862274 Chr1 41968357 41968356 - ORSiTERTOOT00333 4719 0.0612 (183/2989) 0 * Os_TE_862275 Os_TE_862270 Chr1 41964042 41964041 - F804 170 0.1087 (322/2963) 0 * * Os_TE_862258 Chr1 41963213 41963373 - ORSgTETNOOT01460 189 0.8981 (2451/2729) 1 Intact * Os_TE_862257 Chr1 41963147 41963148 - TRUNCATOR2_LTR 2904 0.0015 (4/2612) 0 * Os_TE_862256 Os_TE_862256 Chr1 41963143 41963142 + ORSiTERTOOT00028 8600 0.0011 (3/2797) 0 * Os_TE_862257 Os_TE_862238 Chr1 41952752 41952753 + COPI2_LTR 4733 0.0003 (1/2991) 0 * Os_TE_862237 Os_TE_862237 Chr1 41952748 41952747 - COPI2_LTR 4733 0.0003 (1/2987) 0 * Os_TE_862238 Os_TE_862234 Chr1 41950673 41950672 - INDITTO 263 0.0003 (1/2976) 0 * * Os_TE_862224 Chr1 41949183 41949184 - COPIA2-LTR_OS 6433 0.0007 (2/2968) 0 * Os_TE_862223 Os_TE_862223 Chr1 41949179 41949178 + COPIA2-LTR_OS 6433 0.0007 (2/2986) 0 * Os_TE_862224 Os_TE_862221 Chr1 41949057 41949058 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * * Os_TE_862219 Chr1 41948542 41948543 - F770 284 0.0361 (108/2992) 0 * Os_TE_862218 Os_TE_862218 Chr1 41948540 41948539 + F770 284 0.0367 (110/2994) 0 * Os_TE_862219 Os_TE_862211 Chr1 41946468 41946467 - SUSU 279 0.0017 (5/2862) 0 * * Os_TE_862152 Chr1 41937572 41937573 + COPI2_LTR 4733 0.0003 (1/2963) 0 * Os_TE_862151 Os_TE_862151 Chr1 41937568 41937567 - COPI2_LTR 4733 0.0003 (1/2970) 0 * Os_TE_862152 Os_TE_862149 Chr1 41937010 41937011 + INDITTO 263 0.0003 (1/2965) 0 * Os_TE_862148 Os_TE_862148 Chr1 41937008 41937007 - INDITTO 263 0.0007 (2/2969) 0 * Os_TE_862149 Os_TE_862141 Chr1 41934736 41934737 + ORSgTEMT01601122 212 0.0007 (2/2840) 0 * * Os_TE_862090 Chr1 41911120 41911121 + COPIA2-LTR_OS 6433 0.0010 (3/2938) 0 * Os_TE_862089 Os_TE_862089 Chr1 41911116 41911115 - COPIA2-LTR_OS 6433 0.0010 (3/2926) 0 * Os_TE_862090 Os_TE_862088 Chr1 41910401 41910400 - GYPSY-A_LTR 8951 0.0143 (42/2935) 0 * * Os_TE_862076 Chr1 41909360 41909361 + COPIA2-LTR_OS 6433 0.0010 (3/2969) 0 * Os_TE_862075 Os_TE_862075 Chr1 41909356 41909355 - COPIA2-LTR_OS 6433 0.0010 (3/2968) 0 * Os_TE_862076 Os_TE_862053 Chr1 41903192 41903193 - MuDR3_OS 8604 0.0125 (36/2884) 0 * Os_TE_862052 Os_TE_862052 Chr1 41903183 41903182 - MuDR3_OS 8604 0.0135 (39/2887) 0 * Os_TE_862053 Os_TE_862014 Chr1 41886355 41886356 - CRATA 4786 0.0007 (2/2993) 0 * Os_TE_862013 Os_TE_862013 Chr1 41886348 41886347 + CRATA 4786 0.0003 (1/2991) 0 * Os_TE_862014 Os_TE_862010 Chr1 41883717 41883718 + TELIA 141 0.0003 (1/2986) 0 * Os_TE_862009 Os_TE_862009 Chr1 41883709 41883708 - TELIA 141 0.0003 (1/2987) 0 * Os_TE_862010 Os_TE_862006 Chr1 41881611 41881610 - TYPEH 309 0.0003 (1/2927) 0 * * Os_TE_862005 Chr1 41880790 41880789 - TYPEM 227 0.0011 (3/2798) 0 * Os_TE_862004 Os_TE_862004 Chr1 41880789 41880790 + ORSgTEMT02400206 225 0.0011 (3/2798) 0 * Os_TE_862005 Os_TE_862003 Chr1 41880652 41880653 + TWIFB1 3737 0.1644 (456/2774) 0 * * Os_TE_861991 Chr1 41871584 41871585 + OSR3_LTR 5201 0.0003 (1/2999) 0 * Os_TE_861990 Os_TE_861990 Chr1 41871580 41871579 - OSR3_LTR 5201 0.0003 (1/2998) 0 * Os_TE_861991 Os_TE_861986 Chr1 41869765 41869764 + TWIF 586 0.0007 (2/2823) 0 * * Os_TE_861966 Chr1 41860110 41860109 - STOWAWAY51_OS 246 0.0007 (2/2973) 0 * Os_TE_861965 Os_TE_861965 Chr1 41860107 41860108 - STOWAWAY51_OS 246 0.0007 (2/2957) 0 * Os_TE_861966 Os_TE_861944 Chr1 41857101 41857102 - NDNA2TNA_OS 346 0.1716 (514/2996) 0 * * Os_TE_861932 Chr1 41850533 41850534 - ORSgTEMT01601432 239 0.0007 (2/2953) 0 * * Os_TE_861875 Chr1 41836662 41836663 + FOCUS 257 0.0003 (1/2995) 0 * Os_TE_861874 Os_TE_861874 Chr1 41836661 41836660 - FOCUS 257 0.0003 (1/2995) 0 * Os_TE_861875 Os_TE_861872 Chr1 41836153 41836154 + ORSgTEMT01602181 239 0.0221 (66/2981) 0 * * Os_TE_861834 Chr1 41825280 41825281 - ORSgTEMT02400246 177 0.2867 (859/2996) 0 * * Os_TE_861825 Chr1 41820186 41820185 + STOWAWAY51_OS 246 0.0013 (4/2992) 0 * Os_TE_861824 Os_TE_861824 Chr1 41820180 41820181 - STOWAWAY51_OS 246 0.0013 (4/2993) 0 * Os_TE_861825 Os_TE_861823 Chr1 41817921 41817922 + RIREX_LTR 8828 0.0003 (1/2931) 0 * Os_TE_861822 Os_TE_861822 Chr1 41817917 41817916 - RIREX_LTR 8828 0.0003 (1/2940) 0 * Os_TE_861823 Os_TE_861806 Chr1 41816139 41816138 + ORSgTEMT00101674 340 0.0218 (65/2988) 0 * * Os_TE_861799 Chr1 41814630 41814631 + AMYLTP 383 0.0003 (1/2974) 0 * Os_TE_861798 Os_TE_861798 Chr1 41814622 41814621 - AMYLTP 383 0.0003 (1/2958) 0 * Os_TE_861799 Os_TE_861796 Chr1 41814577 41814576 - INDITTO 263 0.0003 (1/2985) 0 * * Os_TE_861792 Chr1 41813554 41813555 + ORSgTEMT04600037 279 0.0028 (5/1766) 0 * * Os_TE_861789 Chr1 41813310 41813311 - ORSgTEMT00600524 364 0.0014 (4/2826) 0 * Os_TE_861788 Os_TE_861788 Chr1 41813309 41813308 + ORSgTEMT00600272 361 0.0017 (5/2909) 0 * Os_TE_861789 Os_TE_861780 Chr1 41788842 41811177 + ORSgTERTOOT00009 12852 0.1356 (403/2971) 1 Intact * Os_TE_861765 Chr1 41779123 41779122 - ENSPM4_OS 11610 0.2756 (809/2935) 0 * * Os_TE_861750 Chr1 41774536 41774537 - F770 284 0.0060 (17/2852) 0 * Os_TE_861749 Os_TE_861749 Chr1 41774534 41774533 + F770 284 0.0060 (17/2849) 0 * Os_TE_861750 Os_TE_861746 Chr1 41773182 41773181 - ORSgTETN00200001 10994 0.0043 (13/2999) 0 * * Os_TE_861713 Chr1 41764350 41764349 + ORSgTETN00200005 1121 0.1750 (522/2983) 0 * Os_TE_861712 Os_TE_861712 Chr1 41764349 41764350 + CACTA-H 1152 0.1679 (496/2955) 0 * Os_TE_861713 Os_TE_861701 Chr1 41757630 41752712 + ORSiTERTOOT00074 4935 0.1616 (475/2940) 1 Intact Os_TE_861699 Os_TE_861699 Chr1 41752712 41757630 - ORSiTERTOOT00074 4935 0.1635 (486/2972) 1 Intact Os_TE_861701 Os_TE_861694 Chr1 41752258 41752257 + ORSgTETN00200005 1121 0.0057 (17/2980) 0 * Os_TE_861693 Os_TE_861693 Chr1 41752254 41752255 + CACTA-B 1103 0.0057 (17/2982) 0 * Os_TE_861694 Os_TE_861687 Chr1 41750983 41750984 + ORSgTETNOOT00908 242 0.2281 (681/2986) 0 * Os_TE_861686 Os_TE_861686 Chr1 41750981 41750980 + ORSgTETNOOT01219 231 0.2215 (660/2980) 0 * Os_TE_861687 Os_TE_861685 Chr1 41750458 41750459 - SZ-35LTR 3853 0.7719 (2301/2981) 0 * Os_TE_861684 Os_TE_861684 Chr1 41750454 41750453 + RETROSAT4_LTR 13504 0.7574 (2201/2906) 0 * Os_TE_861685 Os_TE_861673 Chr1 41747134 41747135 - ORSgTEMT01601208 238 0.0003 (1/2923) 0 * * Os_TE_861663 Chr1 41737923 41737924 + COPI2_LTR 4733 0.0010 (3/2984) 0 * Os_TE_861662 Os_TE_861662 Chr1 41737919 41737918 - COPI2_LTR 4733 0.0010 (3/2983) 0 * Os_TE_861663 Os_TE_861645 Chr1 41730846 41730847 - SZ-55_LTR 10318 0.0003 (1/2984) 0 * Os_TE_861644 Os_TE_861644 Chr1 41730842 41730841 + SZ-55_LTR 10318 0.0003 (1/2978) 0 * Os_TE_861645 Os_TE_861643 Chr1 41730653 41730654 + MPING 430 0.0020 (6/2978) 0 * Os_TE_861642 Os_TE_861642 Chr1 41730651 41730650 - MPING 430 0.0020 (6/2982) 0 * Os_TE_861643 Os_TE_861615 Chr1 41726319 41726318 - ORSgTEMT00600478 361 0.1842 (544/2953) 0 * * Os_TE_861603 Chr1 41709360 41709361 - COPI2_LTR 4733 0.0003 (1/2920) 0 * * Os_TE_861587 Chr1 41708143 41708144 + OSTE33 1012 0.0221 (65/2935) 0 * Os_TE_861586 Os_TE_861586 Chr1 41708134 41708133 + OSTE33 1012 0.0270 (81/2996) 0 * Os_TE_861587 Os_TE_861555 Chr1 41700679 41700680 + ORSgTETNOOT01219 231 0.0007 (2/2994) 0 * Os_TE_861554 Os_TE_861554 Chr1 41700672 41700671 + ORSgTETNOOT00908 242 0.0003 (1/2990) 0 * Os_TE_861555 Os_TE_861552 Chr1 41699810 41699811 + COPIA2-LTR_OS 6433 0.0003 (1/2967) 0 * Os_TE_861551 Os_TE_861551 Chr1 41699806 41699805 - COPIA2-LTR_OS 6433 0.0003 (1/2967) 0 * Os_TE_861552 Os_TE_861548 Chr1 41698596 41698597 + ORSgTETNOOT00908 242 0.0003 (1/2993) 0 * * Os_TE_861518 Chr1 41685528 41685215 + ORSgTEMT00101588 319 0.5073 (1111/2190) 1 Intact * Os_TE_861435 Chr1 41613421 41613422 - ORSgTEMT01602082 215 0.0309 (79/2555) 0 * * Os_TE_861434 Chr1 41613410 41613411 + TREP220 109 0.1634 (489/2992) 0 * * Os_TE_861433 Chr1 41613135 41613136 - CRATA 4786 0.0003 (1/2947) 0 * * Os_TE_861427 Chr1 41611889 41611890 - ORSgTEMT02000041 194 0.0247 (74/2993) 0 * * Os_TE_861426 Chr1 41611813 41611812 + ORSgTETNOOT00908 242 0.0007 (2/2995) 0 * Os_TE_861425 Os_TE_861425 Chr1 41611772 41611773 - ORSgTETNOOT00908 242 0.0007 (2/2996) 0 * Os_TE_861426 Os_TE_861424 Chr1 41610579 41605065 - SC-5 3770 0.3650 (1091/2989) 1 Intact Os_TE_861422 Os_TE_861422 Chr1 41605065 41610579 + SC-5 3770 0.3637 (1086/2986) 1 Intact Os_TE_861424 Os_TE_861419 Chr1 41603280 41603281 + COPI2_LTR 4733 0.0003 (1/2982) 0 * * Os_TE_861417 Chr1 41603171 41603170 + ORSiTERTOOT00226 792 0.0003 (1/2983) 0 * * Os_TE_861389 Chr1 41586577 41586578 - COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * * Os_TE_861387 Chr1 41586176 41586177 + TYPEU4 402 0.0030 (9/2986) 0 * * Os_TE_861378 Chr1 41580050 41580051 + ORSgTEMT01602669 216 0.1416 (423/2988) 0 * * Os_TE_861373 Chr1 41573377 41573378 + TYPEU4 402 0.0030 (9/2994) 0 * Os_TE_861372 Os_TE_861372 Chr1 41573369 41573368 - TYPEU1 380 0.0027 (8/2995) 0 * Os_TE_861373 Os_TE_861369 Chr1 41572582 41572581 + RETROSAT4_LTR 13504 0.0024 (7/2959) 0 * * Os_TE_861364 Chr1 41570729 41570730 + ORSiTERTOOT00074 4935 0.0017 (3/1776) 0 * Os_TE_861363 Os_TE_861363 Chr1 41570725 41570724 - ORSiTERTOOT00074 4935 0.0017 (3/1774) 0 * Os_TE_861364 Os_TE_861337 Chr1 41558999 41558998 - RETROFIT6_LTR 4799 0.0473 (141/2979) 0 * * Os_TE_861336 Chr1 41558493 41558494 + MERMITEA 1710 0.0064 (19/2964) 0 * * Os_TE_861328 Chr1 41555020 41555021 - MuDR3_OS 8604 0.0304 (91/2994) 0 * Os_TE_861327 Os_TE_861327 Chr1 41555012 41555011 - MuDR3_OS 8604 0.0314 (94/2995) 0 * Os_TE_861328 Os_TE_861326 Chr1 41553981 41553982 + COPIA2-LTR_OS 6433 0.0017 (5/2999) 0 * Os_TE_861325 Os_TE_861325 Chr1 41553977 41553976 - COPIA2-LTR_OS 6433 0.0017 (5/2999) 0 * Os_TE_861326 Os_TE_861324 Chr1 41553766 41553767 + RETRO1_LTR 8314 0.0057 (17/2996) 0 * Os_TE_861323 Os_TE_861323 Chr1 41553762 41553761 - RETRO1_LTR 8314 0.0057 (17/2997) 0 * Os_TE_861324 Os_TE_861302 Chr1 41541826 41541827 - F1275 157 0.0017 (5/2992) 0 * * Os_TE_861284 Chr1 41534908 41535147 - ORSgTEMT01602292 239 0.5281 (1521/2880) 1 Intact * Os_TE_861229 Chr1 41520094 41520093 - LINE-4_OS 3662 0.0017 (5/2960) 0 * * Os_TE_861200 Chr1 41510027 41510026 + ORSgTEMT05200102 278 0.1272 (211/1659) 0 * * Os_TE_861194 Chr1 41509319 41509320 - NDNA1TNA_OS 334 0.0014 (2/1396) 0 * * Os_TE_861162 Chr1 41506360 41506361 - OLO24 345 0.1211 (202/1668) 0 * Os_TE_861161 Os_TE_861161 Chr1 41506358 41506357 + OLO24 345 0.1262 (211/1672) 0 * Os_TE_861162 Os_TE_861136 Chr1 41494424 41494423 + ORSiTERTOOT00027 10853 0.0018 (3/1668) 0 * * Os_TE_861135 Chr1 41493645 41493646 - RIRE2_LTR 11306 0.1081 (204/1888) 0 * Os_TE_861134 Os_TE_861134 Chr1 41493641 41493640 - ORSgTERT00201216 11284 0.1101 (208/1889) 0 * Os_TE_861135 Os_TE_861113 Chr1 41396682 41396683 - MDR2 6967 0.3882 (1155/2975) 0 * Os_TE_861112 Os_TE_861112 Chr1 41396673 41396672 + MDR2 6967 0.3853 (1142/2964) 0 * Os_TE_861113 Os_TE_861111 Chr1 41396171 41396170 + CASBIG 811 0.0115 (34/2956) 0 * * Os_TE_861109 Chr1 41395184 41395185 - RIRE2_LTR 11306 0.0023 (7/2994) 0 * * Os_TE_861088 Chr1 41384982 41384983 - COPI2_LTR 4733 0.0017 (5/2993) 0 * Os_TE_861087 Os_TE_861087 Chr1 41384978 41384977 + COPI2_LTR 4733 0.0020 (6/2996) 0 * Os_TE_861088 Os_TE_861068 Chr1 41374174 41374173 + Cassandra_OS-LTR 764 0.0027 (8/2979) 0 * Os_TE_861067 Os_TE_861067 Chr1 41374168 41374169 - Cassandra_OS-LTR 764 0.0028 (8/2841) 0 * Os_TE_861068 Os_TE_861061 Chr1 41373595 41373596 - MuDR2_OS 6770 0.0081 (19/2332) 0 * Os_TE_861060 Os_TE_861060 Chr1 41373586 41373585 + MuDR2_OS 6770 0.0034 (8/2364) 0 * Os_TE_861061 Os_TE_861041 Chr1 41367553 41367554 + RETROSAT4_LTR 13504 0.0020 (6/2998) 0 * Os_TE_861040 Os_TE_861040 Chr1 41367549 41367548 - SZ-35LTR 3853 0.0020 (6/2998) 0 * Os_TE_861041 Os_TE_861032 Chr1 41366461 41366462 + COPI1_LTR 4721 0.0017 (5/2961) 0 * Os_TE_861031 Os_TE_861031 Chr1 41366457 41366456 - SZ-25LTR 330 0.0017 (5/2962) 0 * Os_TE_861032 Os_TE_861010 Chr1 41356295 41356294 + RETROSAT4_LTR 13504 0.1972 (462/2343) 0 * * Os_TE_861008 Chr1 41355132 41355131 - ORSgTEMT01602404 253 0.0051 (15/2970) 0 * Os_TE_861007 Os_TE_861007 Chr1 41355124 41355125 + ORSgTEMT01602181 239 0.0050 (15/2971) 0 * Os_TE_861008 Os_TE_860948 Chr1 41340055 41340054 - ORSgTEMT02400246 177 0.0023 (7/2995) 0 * Os_TE_860947 Os_TE_860947 Chr1 41340054 41340055 - TYPEM 227 0.0027 (8/2996) 0 * Os_TE_860948 Os_TE_860902 Chr1 41328501 41328502 + OLO24 345 0.0003 (1/2990) 0 * Os_TE_860901 Os_TE_860901 Chr1 41328499 41328498 - OLO24 345 0.0003 (1/2988) 0 * Os_TE_860902 Os_TE_860900 Chr1 41327576 41327577 + ORSiTERTOOT00074 4935 0.0003 (1/2978) 0 * * Os_TE_860890 Chr1 41325058 41325057 - RIREX_LTR 8828 0.0004 (1/2610) 0 * * Os_TE_860882 Chr1 41322272 41322271 + STOWAWAY46_OS 154 0.5820 (1633/2806) 0 * Os_TE_860881 Os_TE_860881 Chr1 41322266 41322267 - STOWAWAY46_OS 154 0.5440 (1435/2638) 0 * Os_TE_860882 Os_TE_860865 Chr1 41321040 41321041 - DITAILA 257 0.6050 (1726/2853) 0 * * Os_TE_860854 Chr1 41316936 41316935 + ORSgTEMT00101341 314 0.0036 (10/2803) 0 * * Os_TE_860795 Chr1 41295102 41295103 + ORSgTETNOOT00032 218 0.0082 (24/2929) 0 * * Os_TE_860774 Chr1 41287507 41287508 + ORSgTEMT01601787 220 0.0011 (3/2856) 0 * * Os_TE_860768 Chr1 41286078 41286079 - COPI2_LTR 4733 0.0003 (1/2987) 0 * Os_TE_860767 Os_TE_860767 Chr1 41286074 41286073 + COPI2_LTR 4733 0.0003 (1/2981) 0 * Os_TE_860768 Os_TE_860748 Chr1 41282748 41282749 + RETRO2A_LTR 12895 0.0479 (137/2862) 0 * Os_TE_860747 Os_TE_860747 Chr1 41282744 41282743 - RETRO1_LTR 8314 0.0551 (162/2938) 0 * Os_TE_860748 Os_TE_860743 Chr1 41281576 41281575 + STOWAWAY51_OS 246 0.0003 (1/2991) 0 * Os_TE_860742 Os_TE_860742 Chr1 41281570 41281571 - STOWAWAY51_OS 246 0.0003 (1/2991) 0 * Os_TE_860743 Os_TE_860741 Chr1 41280500 41280501 - SZ-35LTR 3853 0.0020 (5/2452) 0 * Os_TE_860740 Os_TE_860740 Chr1 41280496 41280495 + RETROSAT4_LTR 13504 0.0020 (5/2522) 0 * Os_TE_860741 Os_TE_860730 Chr1 41277946 41277947 - rn_179-105_LTR 4837 0.5070 (1518/2994) 0 * Os_TE_860729 Os_TE_860729 Chr1 41277942 41277941 + rn_179-105_LTR 4837 0.5040 (1509/2994) 0 * Os_TE_860730 Os_TE_860706 Chr1 41268973 41268974 + ORSiTERTOOT00296 5553 0.0522 (156/2988) 0 * Os_TE_860705 Os_TE_860705 Chr1 41268969 41268968 - SC-3_LTR 5748 0.0535 (160/2989) 0 * Os_TE_860706 Os_TE_860702 Chr1 41267225 41267226 + ORSiCMCM00100019 2717 0.0003 (1/2990) 0 * Os_TE_860701 Os_TE_860701 Chr1 41267221 41267220 - TRUNCATOR2_LTR 2904 0.0003 (1/2993) 0 * Os_TE_860702 Os_TE_860700 Chr1 41266925 41266926 + ORSiTERTOOT00296 5553 0.0007 (2/2843) 0 * Os_TE_860699 Os_TE_860699 Chr1 41266921 41266920 - SC-3_LTR 5748 0.0007 (2/2845) 0 * Os_TE_860700 Os_TE_860670 Chr1 41243780 41243781 + ORSiTERTOOT00366 5449 0.0090 (27/2996) 0 * Os_TE_860669 Os_TE_860669 Chr1 41243776 41243775 - ORSiTERTOOT00366 5449 0.0090 (27/2992) 0 * Os_TE_860670 Os_TE_860664 Chr1 41241037 41241038 - TNR2A 152 0.0020 (6/2981) 0 * Os_TE_860663 Os_TE_860663 Chr1 41241021 41241020 + TNR2A 152 0.0020 (6/2979) 0 * Os_TE_860664 Os_TE_860645 Chr1 41236337 41236338 + FOCUS 257 0.0017 (5/2991) 0 * Os_TE_860644 Os_TE_860644 Chr1 41236335 41236334 - FOCUS 257 0.0017 (5/2990) 0 * Os_TE_860645 Os_TE_860637 Chr1 41229236 41229237 - SZ-9LTR 965 0.0575 (170/2954) 0 * Os_TE_860636 Os_TE_860636 Chr1 41229232 41229231 + SZ-9LTR 965 0.0555 (164/2953) 0 * Os_TE_860637 Os_TE_860608 Chr1 41221935 41221934 - COWARD 200 0.0017 (5/2973) 0 * * Os_TE_860571 Chr1 41208860 41208861 - INDITTO 263 0.0061 (18/2948) 0 * Os_TE_860570 Os_TE_860570 Chr1 41208858 41208857 + INDITTO 263 0.0061 (18/2964) 0 * Os_TE_860571 Os_TE_860567 Chr1 41207646 41207645 + ORSiTERTOOT00296 5553 0.0010 (3/2997) 0 * * Os_TE_860555 Chr1 41199490 41199489 + ORSgTETNOOT01930 140 0.0017 (5/2860) 0 * Os_TE_860554 Os_TE_860554 Chr1 41199489 41199490 + ORSgTEMT00502327 143 0.0017 (5/2927) 0 * Os_TE_860555 Os_TE_860548 Chr1 41194855 41194856 + ORSiTERTOOT00296 5553 0.0301 (90/2994) 0 * Os_TE_860547 Os_TE_860547 Chr1 41194851 41194850 - SC-3_LTR 5748 0.0301 (90/2995) 0 * Os_TE_860548 Os_TE_860544 Chr1 41191763 41191764 - STOWAWAY51_OS 246 0.0006 (1/1802) 0 * * Os_TE_860517 Chr1 41182023 41182024 + HARB-1_OS 5166 0.0007 (2/2998) 0 * Os_TE_860516 Os_TE_860516 Chr1 41182021 41182020 - HARB-1_OS 5166 0.0007 (2/2999) 0 * Os_TE_860517 Os_TE_860515 Chr1 41181903 41181902 + ORSgTEMT01601591 242 0.0003 (1/2998) 0 * Os_TE_860514 Os_TE_860514 Chr1 41181897 41181898 + STOWAWAY51_OS 246 0.0003 (1/2998) 0 * Os_TE_860515 Os_TE_860507 Chr1 41178817 41178816 - OSLINE1-4 4779 0.0017 (5/2958) 0 * * Os_TE_860505 Chr1 41175916 41175917 - SZ-48LTR 3632 0.0043 (13/2998) 0 * * Os_TE_860485 Chr1 41169151 41169152 - OSLINE1_2 6317 0.0027 (8/2979) 0 * * Os_TE_860477 Chr1 41163878 41163879 + OSTE33 1012 0.0008 (2/2592) 0 * * Os_TE_860474 Chr1 41156591 41156592 + ORSgTETNOOT00908 242 0.0004 (1/2828) 0 * Os_TE_860473 Os_TE_860473 Chr1 41156587 41156586 + ORSgTETNOOT01219 231 0.0004 (1/2830) 0 * Os_TE_860474 Os_TE_860469 Chr1 41155789 41155790 + COPIA2-LTR_OS 6433 0.0004 (1/2834) 0 * Os_TE_860468 Os_TE_860468 Chr1 41155785 41155784 - COPIA2-LTR_OS 6433 0.0004 (1/2846) 0 * Os_TE_860469 Os_TE_860463 Chr1 41154954 41154953 + ORSgTEMT01701663 106 0.0007 (2/2838) 0 * Os_TE_860462 Os_TE_860462 Chr1 41154951 41154952 - ORSgTEMT01701418 151 0.0007 (2/2839) 0 * Os_TE_860463 Os_TE_860450 Chr1 41148887 41148665 - ORSgTEMT00900519 244 0.5670 (1528/2695) 1 Intact Os_TE_860445 Os_TE_860445 Chr1 41148655 41148887 - ORSgTEMT00900892 250 0.5664 (1539/2717) 1 Intact Os_TE_860450 Os_TE_860438 Chr1 41147210 41147209 - ORSgTEMT00901138 254 0.0007 (2/2932) 0 * Os_TE_860437 Os_TE_860437 Chr1 41147206 41147207 + ORSgTEMT00900533 246 0.0007 (2/2978) 0 * Os_TE_860438 Os_TE_860428 Chr1 41144713 41144714 + RETROSAT4_LTR 13504 0.1201 (333/2772) 0 * * Os_TE_860426 Chr1 41144463 41144464 - ORSgTEMT04800063 360 0.0060 (18/2993) 0 * * Os_TE_860407 Chr1 41138793 41138794 - MUDRN4_OS 332 0.0017 (5/2979) 0 * Os_TE_860406 Os_TE_860406 Chr1 41138784 41138783 - MUDRN4_OS 332 0.0017 (5/2983) 0 * Os_TE_860407 Os_TE_860404 Chr1 41137981 41137980 - COPIA2-LTR_OS 6433 0.0114 (34/2981) 0 * * Os_TE_860401 Chr1 41137394 41137395 + MERMITEA 1710 0.0011 (3/2839) 0 * Os_TE_860400 Os_TE_860400 Chr1 41137386 41137385 + MERMITEA 1710 0.0014 (4/2794) -1 * Os_TE_860401 Os_TE_860396 Chr1 41136142 41136143 + RIREX_LTR 8828 0.0013 (4/2985) 0 * Os_TE_860395 Os_TE_860395 Chr1 41136138 41136137 - RIREX_LTR 8828 0.0017 (5/2979) 0 * Os_TE_860396 Os_TE_860394 Chr1 41136136 41136137 - DS-RICE2N 613 0.0013 (4/2982) 0 * Os_TE_860393 Os_TE_860393 Chr1 41136129 41136128 + DS-RICE2N 613 0.0013 (4/2981) 0 * Os_TE_860394 Os_TE_860392 Chr1 41135707 41135708 + MERMITEA 1710 0.0010 (3/2993) 0 * Os_TE_860391 Os_TE_860391 Chr1 41135699 41135698 + MERMITEA 1710 0.0010 (3/2995) 0 * Os_TE_860392 Os_TE_860390 Chr1 41135559 41135560 + DS-RICE4N 715 0.4664 (1395/2991) 0 * * Os_TE_860387 Chr1 41134149 41134150 + ORSiTERTOOT00033 4884 0.0003 (1/2994) 0 * Os_TE_860386 Os_TE_860386 Chr1 41134146 41134145 - RETROFIT_LTR 4866 0.0003 (1/2986) 0 * Os_TE_860387 Os_TE_860370 Chr1 41126056 41126057 + ORSgTEMT00501795 147 0.0017 (5/2915) 0 * * Os_TE_860364 Chr1 41122623 41122622 + OSTE21 1271 0.0013 (4/2987) 0 * Os_TE_860363 Os_TE_860363 Chr1 41122615 41122616 + OSTE21 1271 0.0013 (4/2973) 0 * Os_TE_860364 Os_TE_860352 Chr1 41117776 41117777 + COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_860351 Os_TE_860351 Chr1 41117772 41117771 - COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_860352 Os_TE_860350 Chr1 41116174 41116173 + ORSgTEMT00500476 150 0.0017 (5/2997) 0 * Os_TE_860349 Os_TE_860349 Chr1 41116172 41116173 + ORSgTEMT00500260 149 0.0017 (5/2997) 0 * Os_TE_860350 Os_TE_860348 Chr1 41115265 41115266 + F804 170 0.0017 (5/2986) 0 * * Os_TE_860333 Chr1 41108962 41108963 + AMYLTP 383 0.6068 (1812/2986) 0 * Os_TE_860332 Os_TE_860332 Chr1 41108954 41108953 - AMYLTP 383 0.5810 (1649/2838) 0 * Os_TE_860333 Os_TE_860330 Chr1 41108323 41108544 + ORSgTEMT01602083 237 0.3174 (931/2933) 1 Intact * Os_TE_860302 Chr1 41094362 41094138 + ORSgTEMT02400041 225 0.3152 (928/2944) 1 Intact * Os_TE_860279 Chr1 41090964 41090965 - MPING 430 0.0003 (1/2988) 0 * * Os_TE_860263 Chr1 41081470 41081471 + COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_860262 Os_TE_860262 Chr1 41081466 41081465 - COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_860263 Os_TE_860245 Chr1 41074862 41074863 + RIREX_LTR 8828 0.0007 (2/2989) 0 * Os_TE_860244 Os_TE_860244 Chr1 41074858 41074857 - RIREX_LTR 8828 0.0007 (2/2991) 0 * Os_TE_860245 Os_TE_860223 Chr1 41052343 41052344 - BUHUI 375 0.0034 (10/2981) 0 * * Os_TE_860207 Chr1 41049765 41049766 - SZ-63_LTR 9602 0.0003 (1/2965) 0 * * Os_TE_860199 Chr1 41047100 41047099 - ORSgTEMT00501711 149 0.0030 (9/2984) 0 * * Os_TE_860190 Chr1 41046265 41046266 + COPI2_LTR 4733 0.0130 (39/2990) 0 * Os_TE_860189 Os_TE_860189 Chr1 41046261 41046260 - COPI2_LTR 4733 0.0124 (37/2990) 0 * Os_TE_860190 Os_TE_860188 Chr1 41045451 41045450 + SINE1OS 127 0.7097 (2117/2983) 0 * * Os_TE_860170 Chr1 41040868 41040869 - ORSgTEMT00700002 381 0.0003 (1/2928) 0 * Os_TE_860169 Os_TE_860169 Chr1 41040867 41040866 + MUDRN5_OS 374 0.0003 (1/2966) 0 * Os_TE_860170 Os_TE_860167 Chr1 41040174 41040175 + ORSgTEMT01601591 242 0.0020 (6/2970) 0 * * Os_TE_860157 Chr1 41037480 41037479 - STOWAWAY51_OS 246 0.0003 (1/2991) 0 * Os_TE_860156 Os_TE_860156 Chr1 41037477 41037478 - STOWAWAY51_OS 246 0.0003 (1/2995) 0 * Os_TE_860157 Os_TE_860135 Chr1 41028718 41028719 + RETROSAT4_LTR 13504 0.0003 (1/2964) 0 * Os_TE_860134 Os_TE_860134 Chr1 41028714 41028713 - SZ-35LTR 3853 0.0003 (1/2963) 0 * Os_TE_860135 Os_TE_860133 Chr1 41028087 41028088 - EnSpm-13_OS 11171 0.0003 (1/2919) 0 * Os_TE_860132 Os_TE_860132 Chr1 41028085 41028084 + EnSpm-13_OS 11171 0.0003 (1/2901) 0 * Os_TE_860133 Os_TE_860125 Chr1 41026798 41026799 + AMYLTP 383 0.0014 (4/2919) 0 * * Os_TE_860122 Chr1 41026283 41026284 + ORSgTEMT01701115 144 0.0011 (3/2833) 0 * * Os_TE_860091 Chr1 41019164 41019163 - ORSiTERTOOT00138 2740 0.0007 (2/2988) 0 * * Os_TE_860090 Chr1 41019160 41019161 + ORSiTERTOOT00074 4935 0.0003 (1/2991) 0 * Os_TE_860089 Os_TE_860089 Chr1 41019156 41019155 - ORSiTERTOOT00074 4935 0.0003 (1/2988) 0 * Os_TE_860090 Os_TE_860055 Chr1 41001684 41001685 - SC-8_LTR 4951 0.0542 (162/2991) 0 * Os_TE_860054 Os_TE_860054 Chr1 41001680 41001679 + ORSiTERTOOT00381 4988 0.0538 (161/2992) 0 * Os_TE_860055 Os_TE_860053 Chr1 41001556 41001557 + ORSiTERTOOT00296 5553 0.0007 (2/2990) 0 * Os_TE_860052 Os_TE_860052 Chr1 41001552 41001551 - SC-3_LTR 5748 0.0009 (2/2153) 0 * Os_TE_860053 Os_TE_860021 Chr1 40980191 40980190 + OSTE9 421 0.0003 (1/2991) 0 * * Os_TE_860010 Chr1 40975822 40975821 + STOWAWAY44_OS 240 0.0003 (1/2934) 0 * * Os_TE_860004 Chr1 40975263 40975264 - INDITTO 263 0.0010 (3/2997) 0 * Os_TE_860003 Os_TE_860003 Chr1 40975261 40975260 + INDITTO 263 0.0010 (3/2997) 0 * Os_TE_860004 Os_TE_859943 Chr1 40949667 40949668 - INDITTO 263 0.3263 (906/2777) 0 * * Os_TE_859938 Chr1 40946837 40946838 + MuDR2_OS 6770 0.2839 (834/2938) 0 * Os_TE_859937 Os_TE_859937 Chr1 40946829 40946828 - MuDR2_OS 6770 0.2572 (734/2854) 0 * Os_TE_859938 Os_TE_859907 Chr1 40941430 40941429 - RIREX_LTR 8828 0.0003 (1/2984) 0 * * Os_TE_859895 Chr1 40932120 40932121 + OSR3_LTR 5201 0.0003 (1/2994) 0 * Os_TE_859894 Os_TE_859894 Chr1 40932116 40932115 - OSR3_LTR 5201 0.0003 (1/2989) 0 * Os_TE_859895 Os_TE_859860 Chr1 40920654 40920655 - OsSN3 183 0.0027 (8/2972) 0 * * Os_TE_859818 Chr1 40900609 40900610 + RETRO2A_LTR 12895 0.0765 (212/2773) 0 * Os_TE_859817 Os_TE_859817 Chr1 40900605 40900604 - RETRO1_LTR 8314 0.0755 (209/2770) 0 * Os_TE_859818 Os_TE_859783 Chr1 40878956 40878957 + F770 284 0.0258 (77/2987) 0 * Os_TE_859782 Os_TE_859782 Chr1 40878954 40878953 - F770 284 0.0254 (76/2988) 0 * Os_TE_859783 Os_TE_859772 Chr1 40878185 40878186 - RIRE2_LTR 11306 0.0040 (12/2966) 0 * Os_TE_859771 Os_TE_859771 Chr1 40878181 40878180 + RIREX_LTR 8828 0.0040 (12/2963) 0 * Os_TE_859772 Os_TE_859770 Chr1 40878112 40878113 + SPMLIKE 10989 0.0685 (203/2964) 0 * Os_TE_859769 Os_TE_859769 Chr1 40878110 40878109 - ORSgTETN00200001 10994 0.0648 (191/2948) 0 * Os_TE_859770 Os_TE_859725 Chr1 40862471 40862472 + ORSiTERTOOT00226 792 0.0007 (2/2949) 0 * Os_TE_859724 Os_TE_859724 Chr1 40862467 40862466 - SZ-22_LTR 4403 0.0007 (2/2939) 0 * Os_TE_859725 Os_TE_859716 Chr1 40853070 40858118 + CPSC4B_LTR 5343 0.2469 (727/2944) 1 Intact * Os_TE_859714 Chr1 40851816 40851815 - ORSgTEMT00700002 381 0.0007 (2/2998) 0 * Os_TE_859713 Os_TE_859713 Chr1 40851809 40851810 + ORSgTEMT00700017 386 0.0007 (2/2989) 0 * Os_TE_859714 Os_TE_859693 Chr1 40845199 40845198 + ORSgTEMT00901386 242 0.0004 (1/2686) 0 * * Os_TE_859656 Chr1 40832394 40832395 - ORSiTERTOOT00441 4741 0.0007 (2/2998) 0 * Os_TE_859655 Os_TE_859655 Chr1 40832390 40832389 + ORSiTERTOOT00441 4741 0.0007 (2/2997) 0 * Os_TE_859656 Os_TE_859647 Chr1 40827506 40827507 + SC-8_LTR 4951 0.0003 (1/2989) 0 * Os_TE_859646 Os_TE_859646 Chr1 40827502 40827501 - SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_859647 Os_TE_859645 Chr1 40825569 40825570 - SC-3_LTR 5748 0.0037 (11/2998) 0 * Os_TE_859644 Os_TE_859644 Chr1 40825565 40825564 + ORSiTERTOOT00296 5553 0.0037 (11/2996) 0 * Os_TE_859645 Os_TE_859641 Chr1 40822880 40822881 + ORSgTETNOOT00908 242 0.0047 (14/2985) 0 * * Os_TE_859640 Chr1 40822346 40822345 - HELITRON7_OS 10153 0.6154 (1824/2964) 0 * * Os_TE_859638 Chr1 40822073 40822074 + ORSgTEMT04600032 273 0.0003 (1/2971) 0 * * Os_TE_859606 Chr1 40814330 40814331 + MPING 430 0.0024 (3/1245) 0 * * Os_TE_859536 Chr1 40781147 40781148 - SC-8_LTR 4951 0.0003 (1/2988) 0 * * Os_TE_859508 Chr1 40771770 40771771 - COPI2_LTR 4733 0.0007 (2/2956) 0 * Os_TE_859507 Os_TE_859507 Chr1 40771766 40771765 + COPI2_LTR 4733 0.0010 (3/2952) 0 * Os_TE_859508 Os_TE_859453 Chr1 40750873 40750874 - COPI2_LTR 4733 0.0010 (3/2972) 0 * * Os_TE_859431 Chr1 40743122 40743123 + SC-8_LTR 4951 0.0003 (1/2993) 0 * Os_TE_859430 Os_TE_859430 Chr1 40743118 40743117 - SC-8_LTR 4951 0.0003 (1/2994) 0 * Os_TE_859431 Os_TE_859423 Chr1 40738187 40738188 + RIREX_LTR 8828 0.0007 (2/2991) 0 * Os_TE_859422 Os_TE_859422 Chr1 40738183 40738182 - RIREX_LTR 8828 0.0007 (2/2991) 0 * Os_TE_859423 Os_TE_859419 Chr1 40737248 40737009 + ORSgTEMT01601122 212 0.2958 (884/2989) 1 Intact * Os_TE_859387 Chr1 40731528 40731290 + ORSgTEMT01601934 207 0.2892 (852/2946) 1 Intact Os_TE_859386 Os_TE_859386 Chr1 40731290 40731528 + ORSgTEMT01602029 239 0.2744 (794/2894) 1 Intact Os_TE_859387 Os_TE_859378 Chr1 40723400 40723401 + ORSiTERTOOT00226 792 0.0010 (3/2994) 0 * Os_TE_859377 Os_TE_859377 Chr1 40723396 40723395 - SZ-22_LTR 4403 0.0010 (3/2995) 0 * Os_TE_859378 Os_TE_859373 Chr1 40723050 40723049 + ORSgTEMT01601591 242 0.0003 (1/2956) 0 * * Os_TE_859364 Chr1 40722454 40722455 + ORSgTEMT01601591 242 0.0003 (1/2985) 0 * * Os_TE_859339 Chr1 40710708 40710709 - SC-8_LTR 4951 0.0003 (1/2995) 0 * Os_TE_859338 Os_TE_859338 Chr1 40710704 40710703 + SC-8_LTR 4951 0.0003 (1/2995) 0 * Os_TE_859339 Os_TE_859314 Chr1 40700993 40700994 + RIREX_LTR 8828 0.0010 (3/2980) 0 * Os_TE_859313 Os_TE_859313 Chr1 40700989 40700988 - RIREX_LTR 8828 0.0010 (3/2974) 0 * Os_TE_859314 Os_TE_859302 Chr1 40693371 40693372 - ORSiTERTOOT00301 9654 0.0010 (1/975) -1 * * Os_TE_859269 Chr1 40687346 40687347 - STOWAWAY51_OS 246 0.0003 (1/2994) 0 * * Os_TE_859251 Chr1 40673547 40673548 - SC-8_LTR 4951 0.0010 (3/2990) 0 * Os_TE_859250 Os_TE_859250 Chr1 40673543 40673542 + SC-8_LTR 4951 0.0010 (3/2988) 0 * Os_TE_859251 Os_TE_859249 Chr1 40673234 40673235 - SC-3_LTR 5748 0.0003 (1/2995) 0 * * Os_TE_859240 Chr1 40664514 40664513 - STOWAWAY51_OS 246 0.0067 (20/2997) 0 * Os_TE_859239 Os_TE_859239 Chr1 40664508 40664509 + STOWAWAY51_OS 246 0.0067 (20/2991) 0 * Os_TE_859240 Os_TE_859235 Chr1 40662374 40662373 - SC-8_LTR 4951 0.0007 (2/2995) 0 * * Os_TE_859229 Chr1 40660462 40660461 + F524 291 0.0003 (1/2970) 0 * * Os_TE_859218 Chr1 40657472 40657473 + ORSiTERTOOT00296 5553 0.0007 (2/2985) 0 * Os_TE_859217 Os_TE_859217 Chr1 40657468 40657467 - SC-3_LTR 5748 0.0010 (3/2944) 0 * Os_TE_859218 Os_TE_859213 Chr1 40653488 40653294 - ORSgTEMT02000081 196 0.3030 (899/2967) 1 Intact * Os_TE_859179 Chr1 40641679 40641680 + GYPSY-A_LTR 8951 0.0978 (292/2987) 0 * Os_TE_859178 Os_TE_859178 Chr1 40641675 40641674 - GYPSY-A_LTR 8951 0.2092 (296/1415) 0 * Os_TE_859179 Os_TE_859160 Chr1 40632855 40632854 - TYPEM 227 0.0003 (1/2978) 0 * Os_TE_859159 Os_TE_859159 Chr1 40632854 40632855 - ORSgTEMT02400246 177 0.0003 (1/2983) 0 * Os_TE_859160 Os_TE_859149 Chr1 40630081 40630082 - CLOUD 734 0.0017 (5/2936) 0 * * Os_TE_859139 Chr1 40625172 40625173 - ORSgTEMT00100848 160 0.0008 (2/2414) -1 * * Os_TE_859108 Chr1 40615334 40615335 + RPO_OS 1983 0.0013 (4/2990) 0 * Os_TE_859107 Os_TE_859107 Chr1 40615330 40615329 - RPO_OS 1983 0.0013 (4/2983) 0 * Os_TE_859108 Os_TE_859090 Chr1 40602523 40602522 + STOWAWAY51_OS 246 0.0003 (1/2988) 0 * Os_TE_859089 Os_TE_859089 Chr1 40602517 40602518 + ORSgTEMT01601591 242 0.0003 (1/2984) 0 * Os_TE_859090 Os_TE_859086 Chr1 40602369 40602370 + STOWAWAY51_OS 246 0.0713 (212/2975) 0 * * Os_TE_859077 Chr1 40599379 40599380 - HARB-1_OS 5166 0.1726 (503/2915) 0 * Os_TE_859076 Os_TE_859076 Chr1 40599377 40599376 + HARB-1_OS 5166 0.1721 (502/2917) 0 * Os_TE_859077 Os_TE_859074 Chr1 40599223 40599224 - INDITTO 263 0.0003 (1/2949) 0 * * Os_TE_859071 Chr1 40599130 40599129 - ORSgTEMT02400148 214 0.0027 (8/2959) 0 * Os_TE_859070 Os_TE_859070 Chr1 40599129 40599130 - TYPEM 227 0.0030 (9/2954) 0 * Os_TE_859071 Os_TE_859068 Chr1 40597001 40597002 + ORSiTERTOOT00296 5553 0.0003 (1/2997) 0 * * Os_TE_859066 Chr1 40596655 40596656 - SC-3_LTR 5748 0.0084 (25/2994) 0 * Os_TE_859065 Os_TE_859065 Chr1 40596651 40596650 + ORSiTERTOOT00296 5553 0.0084 (25/2993) 0 * Os_TE_859066 Os_TE_859056 Chr1 40592854 40592855 - F770 284 0.0023 (7/2993) 0 * Os_TE_859055 Os_TE_859055 Chr1 40592852 40592851 + F770 284 0.0023 (7/2989) 0 * Os_TE_859056 Os_TE_859034 Chr1 40588036 40588035 + ORSiTERTOOT00296 5553 0.0003 (1/2983) 0 * * Os_TE_859033 Chr1 40585999 40586000 + F569 228 0.0003 (1/2988) 0 * Os_TE_859032 Os_TE_859032 Chr1 40585997 40585996 - F569 228 0.0003 (1/2993) 0 * Os_TE_859033 Os_TE_859030 Chr1 40584961 40584962 + COPI2_LTR 4733 0.0067 (20/2984) 0 * * Os_TE_858983 Chr1 40569183 40569184 + ORSgTETNOOT00908 242 0.1638 (487/2974) 0 * Os_TE_858982 Os_TE_858982 Chr1 40569176 40569175 + ORSgTETNOOT01219 231 0.1641 (490/2986) 0 * Os_TE_858983 Os_TE_858981 Chr1 40566827 40566828 + AMYLTP 383 0.0017 (5/2997) 0 * Os_TE_858980 Os_TE_858980 Chr1 40566819 40566818 - AMYLTP 383 0.0017 (5/2994) 0 * Os_TE_858981 Os_TE_858978 Chr1 40564562 40564339 - ORSgTEMT01602571 239 0.1301 (387/2975) 1 Intact * Os_TE_858973 Chr1 40562129 40562128 + ORSgTEMT01601122 212 0.5494 (1428/2599) 0 * * Os_TE_858963 Chr1 40560497 40560498 - ORSiTETNOOT00134 607 0.0004 (1/2654) 0 * Os_TE_858962 Os_TE_858962 Chr1 40560490 40560489 + TWIF 586 0.0003 (1/2965) 0 * Os_TE_858963 Os_TE_858960 Chr1 40559973 40559972 + NDNA1TNA_OS 334 0.8719 (2601/2983) 0 * * Os_TE_858959 Chr1 40559769 40559588 + OsSN3 183 0.1312 (391/2981) 1 Intact * Os_TE_858946 Chr1 40551128 40551129 + ORSiTERTOOT00296 5553 0.0003 (1/2997) 0 * Os_TE_858945 Os_TE_858945 Chr1 40551124 40551123 - SC-3_LTR 5748 0.0003 (1/2978) 0 * Os_TE_858946 Os_TE_858937 Chr1 40541758 40541757 + ORSiTERTOOT00296 5553 0.0003 (1/2969) 0 * * Os_TE_858934 Chr1 40539998 40540147 - COWARD 200 0.1306 (382/2925) 1 Intact * Os_TE_858931 Chr1 40537979 40539173 - SZ-5LTR 1223 0.1314 (389/2960) 1 Intact * Os_TE_858916 Chr1 40535122 40535459 + OLO24B 335 0.0600 (176/2931) 1 Intact * Os_TE_858915 Chr1 40534240 40533993 - ORSgTEMT00901723 248 0.0591 (173/2926) 1 Intact * Os_TE_858908 Chr1 40532009 40532008 - STOWAWAY51_OS 246 0.0003 (1/2920) 0 * * Os_TE_858903 Chr1 40528485 40528486 + COPI2_LTR 4733 0.0003 (1/2963) 0 * Os_TE_858902 Os_TE_858902 Chr1 40528481 40528480 - COPI2_LTR 4733 0.0007 (2/2958) 0 * Os_TE_858903 Os_TE_858901 Chr1 40528277 40528278 - STOWAWAY51_OS 246 0.0003 (1/2979) 0 * * Os_TE_858878 Chr1 40511818 40511819 + SPMLIKE 10989 0.0003 (1/2929) 0 * Os_TE_858877 Os_TE_858877 Chr1 40511816 40511815 - ORSgTETN00200001 10994 0.0003 (1/2924) 0 * Os_TE_858878 Os_TE_858861 Chr1 40504021 40504022 + SC-8_LTR 4951 0.0010 (3/2988) 0 * Os_TE_858860 Os_TE_858860 Chr1 40504017 40504016 - SC-8_LTR 4951 0.0010 (3/2985) 0 * Os_TE_858861 Os_TE_858852 Chr1 40499405 40499404 + TWIFB1 3737 0.0003 (1/2975) 0 * * Os_TE_858823 Chr1 40491041 40491042 - INDITTO 263 0.0716 (212/2962) 0 * Os_TE_858822 Os_TE_858822 Chr1 40491039 40491038 + INDITTO 263 0.0706 (211/2987) 0 * Os_TE_858823 Os_TE_858816 Chr1 40483860 40483861 - BAJIELTR 4500 0.0003 (1/2976) 0 * * Os_TE_858814 Chr1 40483132 40482887 + STOWAWAY51_OS 246 0.1478 (441/2984) 1 Intact Os_TE_858813 Os_TE_858813 Chr1 40482884 40483129 + STOWAWAY51_OS 246 0.1489 (445/2989) 1 Intact Os_TE_858814 Os_TE_858800 Chr1 40475293 40475294 - COPIA2-LTR_OS 6433 0.0003 (1/2945) 0 * Os_TE_858799 Os_TE_858799 Chr1 40475289 40475288 + COPIA2-LTR_OS 6433 0.0003 (1/2936) 0 * Os_TE_858800 Os_TE_858769 Chr1 40471506 40471505 - ORSgTEMT01601696 238 0.1033 (305/2952) 0 * * Os_TE_858768 Chr1 40471503 40471504 - ORSgTEMT01601432 239 0.1036 (306/2955) 0 * Os_TE_858767 Os_TE_858767 Chr1 40471500 40471499 - ORSgTEMT01600650 234 0.1007 (296/2938) 0 * Os_TE_858768 Os_TE_858751 Chr1 40465358 40465359 + SC-8_LTR 4951 0.0144 (43/2992) 0 * Os_TE_858750 Os_TE_858750 Chr1 40465354 40465353 - SC-8_LTR 4951 0.0144 (43/2991) 0 * Os_TE_858751 Os_TE_858735 Chr1 40459770 40459771 + OSTONOR1_LTR 6440 0.0007 (2/2978) 0 * Os_TE_858734 Os_TE_858734 Chr1 40459766 40459765 - ORSiTERT00100062 5674 0.0007 (2/2971) 0 * Os_TE_858735 Os_TE_858729 Chr1 40453704 40453703 - MuDR3_OS 8604 0.0234 (70/2992) 0 * Os_TE_858728 Os_TE_858728 Chr1 40453689 40453690 + MuDR3_OS 8604 0.0235 (69/2936) 0 * Os_TE_858729 Os_TE_858700 Chr1 40441427 40441426 - SC-8_LTR 4951 0.0007 (2/2992) 0 * * Os_TE_858681 Chr1 40432209 40432208 - ORSgTEMT01601432 239 0.0003 (1/2967) 0 * Os_TE_858680 Os_TE_858680 Chr1 40432206 40432207 - ORSgTEMT01601696 238 0.0003 (1/2955) 0 * Os_TE_858681 Os_TE_858652 Chr1 40424019 40424020 + COPI2_LTR 4733 0.0017 (5/2980) 0 * Os_TE_858651 Os_TE_858651 Chr1 40424015 40424014 - COPI2_LTR 4733 0.0020 (6/2983) 0 * Os_TE_858652 Os_TE_858650 Chr1 40423443 40423442 - COPIA2-LTR_OS 6433 0.0003 (1/2945) 0 * * Os_TE_858643 Chr1 40419475 40419476 - ORSgTERT00201216 11284 0.1611 (477/2961) 0 * Os_TE_858642 Os_TE_858642 Chr1 40419471 40419470 - RIRE2_LTR 11306 0.1603 (474/2957) 0 * Os_TE_858643 Os_TE_858638 Chr1 40418456 40418455 + ORSgTEMT01601934 207 0.0101 (18/1789) 0 * * Os_TE_858633 Chr1 40417774 40417775 - ORSgTETN00200001 10994 0.0061 (18/2961) 0 * Os_TE_858632 Os_TE_858632 Chr1 40417772 40417771 + CACTA-M 1129 0.0064 (19/2962) 0 * Os_TE_858633 Os_TE_858627 Chr1 40416381 40416161 - ORSgTEMT02400179 221 0.1378 (376/2729) 1 Intact * Os_TE_858598 Chr1 40405384 40405383 - ORSgTEMT01601493 303 0.0003 (1/2996) 0 * * Os_TE_858592 Chr1 40399443 40399444 + SC-8_LTR 4951 0.0003 (1/2978) 0 * Os_TE_858591 Os_TE_858591 Chr1 40399439 40399438 - SC-8_LTR 4951 0.0003 (1/2980) 0 * Os_TE_858592 Os_TE_858543 Chr1 40378667 40378668 + MDM2 312 0.0003 (1/2949) 0 * * Os_TE_858519 Chr1 40369464 40369465 + RETROSAT2LTR 12796 0.0013 (4/2977) 0 * Os_TE_858518 Os_TE_858518 Chr1 40369462 40369461 - RETROSAT2LTR 12796 0.0013 (4/2987) 0 * Os_TE_858519 Os_TE_858508 Chr1 40366888 40366889 - MuDR3_OS 8604 0.0017 (5/2984) 0 * Os_TE_858507 Os_TE_858507 Chr1 40366880 40366879 + MuDR3_OS 8604 0.0017 (5/2982) 0 * Os_TE_858508 Os_TE_858498 Chr1 40359331 40359330 - F524 291 0.0020 (4/2006) 0 * * Os_TE_858476 Chr1 40345787 40345788 + RETRO2A_LTR 12895 0.0008 (2/2533) 0 * * Os_TE_858469 Chr1 40341990 40341991 + RETROSAT2LTR 12796 0.6467 (1900/2938) 0 * Os_TE_858468 Os_TE_858468 Chr1 40341989 40341988 - RETROSAT2LTR 12796 0.6582 (1970/2993) 0 * Os_TE_858469 Os_TE_858462 Chr1 40336903 40336904 - SC-8_LTR 4951 0.0003 (1/2997) 0 * Os_TE_858461 Os_TE_858461 Chr1 40336899 40336898 + SC-8_LTR 4951 0.0003 (1/2997) 0 * Os_TE_858462 Os_TE_858453 Chr1 40330502 40330503 + NDNA2TNA_OS 346 0.0315 (94/2986) 0 * Os_TE_858452 Os_TE_858452 Chr1 40330500 40330499 - NDNA2TNA_OS 346 0.0308 (91/2958) 0 * Os_TE_858453 Os_TE_858408 Chr1 40322426 40322427 + ORSgTEMT01600421 237 0.0014 (4/2843) 0 * * Os_TE_858396 Chr1 40320604 40320603 - ORSgTETNOOT02536 198 0.0003 (1/2983) 0 * * Os_TE_858344 Chr1 40300740 40300741 + ORSgTETNOOT00908 242 0.0037 (4/1073) 0 * * Os_TE_858313 Chr1 40290992 40290993 + ORSgTEMT01602181 239 0.0020 (6/2985) 0 * * Os_TE_858305 Chr1 40290278 40290279 - COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * * Os_TE_858295 Chr1 40287097 40287098 + TWIF 586 0.0017 (5/2980) 0 * Os_TE_858294 Os_TE_858294 Chr1 40287090 40287089 - ORSiTETNOOT00134 607 0.0020 (6/2981) 0 * Os_TE_858295 Os_TE_858252 Chr1 40278935 40278934 - ORSgTEMT02400179 221 0.6575 (1958/2978) 0 * Os_TE_858251 Os_TE_858251 Chr1 40278933 40278934 + ORSgTEMT02400041 225 0.6605 (1975/2990) 0 * Os_TE_858252 Os_TE_858250 Chr1 40278306 40278307 + MuDR2_OS 6770 0.0003 (1/2981) 0 * Os_TE_858249 Os_TE_858249 Chr1 40278297 40278296 - MuDR2_OS 6770 0.0003 (1/2982) 0 * Os_TE_858250 Os_TE_858235 Chr1 40268717 40268716 + STOWAWAY51_OS 246 0.0003 (1/2996) 0 * Os_TE_858234 Os_TE_858234 Chr1 40268712 40268713 + ORSgTEMT01601591 242 0.0003 (1/2999) 0 * Os_TE_858235 Os_TE_858197 Chr1 40249738 40249739 + SZ-55_LTR 10318 0.0003 (1/2996) 0 * Os_TE_858196 Os_TE_858196 Chr1 40249734 40249733 - SZ-55_LTR 10318 0.0003 (1/2997) 0 * Os_TE_858197 Os_TE_858194 Chr1 40248522 40248523 - MPING 430 0.0003 (1/2993) 0 * Os_TE_858193 Os_TE_858193 Chr1 40248520 40248519 + MPING 430 0.0003 (1/2991) 0 * Os_TE_858194 Os_TE_858191 Chr1 40245957 40245958 - TELIA 141 0.0003 (1/2990) 0 * Os_TE_858190 Os_TE_858190 Chr1 40245949 40245948 + TELIA 141 0.0003 (1/2989) 0 * Os_TE_858191 Os_TE_858185 Chr1 40240762 40240761 + LTR10_OS 202 0.0016 (2/1272) 0 * * Os_TE_858129 Chr1 40208424 40208425 - COPIA2-LTR_OS 6433 0.0007 (2/2977) 0 * Os_TE_858128 Os_TE_858128 Chr1 40208414 40208413 + COPIA2-LTR_OS 6433 0.0007 (2/2977) 0 * Os_TE_858129 Os_TE_858122 Chr1 40204915 40204916 + ORSgTEMT01601591 242 0.0003 (1/2886) 0 * * Os_TE_858114 Chr1 40199932 40195936 - RETROSAT4_LTR 13504 0.3434 (1028/2994) 1 Solo_LTR Os_TE_858113 Os_TE_858113 Chr1 40195947 40199932 + RETROSAT4_LTR 13504 0.3402 (1014/2981) 1 Solo_LTR Os_TE_858114 Os_TE_858108 Chr1 40192342 40192343 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_858107 Os_TE_858107 Chr1 40192338 40192337 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_858108 Os_TE_858101 Chr1 40189783 40189784 + ORSgTETNOOT01834 251 0.6290 (1868/2970) 0 * Os_TE_858100 Os_TE_858100 Chr1 40189781 40189780 - ORSgTETNOOT00754 253 0.6329 (1893/2991) 0 * Os_TE_858101 Os_TE_858077 Chr1 40176623 40176624 + ORSiTERTOOT00296 5553 0.0003 (1/2996) 0 * Os_TE_858076 Os_TE_858076 Chr1 40176619 40176618 - SC-3_LTR 5748 0.0003 (1/2997) 0 * Os_TE_858077 Os_TE_858035 Chr1 40162382 40162383 + ORSiTERTOOT00074 4935 0.0164 (49/2985) 0 * Os_TE_858034 Os_TE_858034 Chr1 40162378 40162377 - ORSiTERTOOT00074 4935 0.0157 (47/2995) 0 * Os_TE_858035 Os_TE_858031 Chr1 40160596 40160597 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * * Os_TE_857968 Chr1 40131446 40131445 + ORSgTEMT01602637 232 0.0003 (1/2959) 0 * Os_TE_857967 Os_TE_857967 Chr1 40131443 40131444 + ORSgTEMT01601934 207 0.0003 (1/2942) 0 * Os_TE_857968 Os_TE_857951 Chr1 40124548 40124549 + COPI2_LTR 4733 0.0003 (1/2982) 0 * * Os_TE_857950 Chr1 40124140 40124141 - RIREX_LTR 8828 0.0003 (1/2977) 0 * Os_TE_857949 Os_TE_857949 Chr1 40124136 40124135 + RIREX_LTR 8828 0.0003 (1/2932) 0 * Os_TE_857950 Os_TE_857946 Chr1 40123582 40123583 - AMYLTP 383 0.0007 (2/2892) 0 * * Os_TE_857934 Chr1 40122232 40122231 - RETROSAT2LTR 12796 0.0361 (108/2991) 0 * * Os_TE_857925 Chr1 40119703 40119702 - SC-8_LTR 4951 0.0003 (1/2991) 0 * * Os_TE_857923 Chr1 40117914 40117915 - SC-8_LTR 4951 0.0010 (3/2995) 0 * Os_TE_857922 Os_TE_857922 Chr1 40117910 40117909 + ORSiTERTOOT00381 4988 0.0010 (3/2992) 0 * Os_TE_857923 Os_TE_857921 Chr1 40117028 40117029 - SC-3_LTR 5748 0.0003 (1/2994) 0 * Os_TE_857920 Os_TE_857920 Chr1 40117024 40117023 + ORSiTERTOOT00296 5553 0.0003 (1/2993) 0 * Os_TE_857921 Os_TE_857887 Chr1 40100948 40100949 + ORSiTEMT00300001 383 0.0034 (10/2964) 0 * * Os_TE_857885 Chr1 40100615 40100616 - RIREX_LTR 8828 0.0003 (1/2993) 0 * Os_TE_857884 Os_TE_857884 Chr1 40100611 40100610 + RIREX_LTR 8828 0.0003 (1/2994) 0 * Os_TE_857885 Os_TE_857883 Chr1 40099438 40099437 - STOWAWAY51_OS 246 0.0003 (1/2976) 0 * * Os_TE_857881 Chr1 40097470 40097471 - TOS17LTR 138 0.0007 (2/2986) 0 * Os_TE_857880 Os_TE_857880 Chr1 40097466 40097465 + TOS17LTR 138 0.0003 (1/2988) 0 * Os_TE_857881 Os_TE_857871 Chr1 40093098 40091891 + SZLTR 1249 0.3587 (1065/2969) 1 Intact Os_TE_857867 Os_TE_857867 Chr1 40091891 40093098 - SZLTR 1249 0.3517 (1045/2971) 1 Intact Os_TE_857871 Os_TE_857800 Chr1 40062315 40062316 - STOWAWAY11_OS 292 0.0003 (1/2988) 0 * * Os_TE_857799 Chr1 40061657 40061658 + HARB-1_OS 5166 0.0003 (1/2993) 0 * Os_TE_857798 Os_TE_857798 Chr1 40061655 40061654 - HARB-1_OS 5166 0.0003 (1/2991) 0 * Os_TE_857799 Os_TE_857756 Chr1 40050495 40050257 - ORSgTEMT01602165 239 0.3635 (979/2693) 1 Intact * Os_TE_857750 Chr1 40049430 40049431 - ORSgTEMT01602676 227 0.0004 (1/2664) 0 * * Os_TE_857736 Chr1 40047018 40041746 - RETRO2_LTR 12874 0.3389 (1015/2995) 1 Intact * Os_TE_857711 Chr1 40029498 40029497 + STOWAWAY51_OS 246 0.0347 (104/2994) 0 * * Os_TE_857667 Chr1 40017462 40017461 - STOWAWAY51_OS 246 0.0007 (2/2993) 0 * * Os_TE_857661 Chr1 40015692 40015693 - AMYLTP 383 0.5820 (1672/2873) 0 * Os_TE_857660 Os_TE_857660 Chr1 40015684 40015683 + AMYLTP 383 0.5927 (1742/2939) 0 * Os_TE_857661 Os_TE_857626 Chr1 40002822 40002823 - MPING 430 0.0003 (1/2981) 0 * Os_TE_857625 Os_TE_857625 Chr1 40002820 40002819 + MPING 430 0.0003 (1/2982) 0 * Os_TE_857626 Os_TE_857580 Chr1 39984377 39984376 - STOWAWAY51_OS 246 0.0003 (1/2992) 0 * Os_TE_857579 Os_TE_857579 Chr1 39984374 39984375 + ORSgTEMT01600120 242 0.0003 (1/2987) 0 * Os_TE_857580 Os_TE_857550 Chr1 39970464 39970465 - SC-8_LTR 4951 0.0007 (2/2969) 0 * Os_TE_857549 Os_TE_857549 Chr1 39970460 39970459 + SC-8_LTR 4951 0.0007 (2/2969) 0 * Os_TE_857550 Os_TE_857534 Chr1 39964963 39964964 + ORSiTERTOOT00296 5553 0.0010 (3/2985) 0 * Os_TE_857533 Os_TE_857533 Chr1 39964959 39964958 - SC-3_LTR 5748 0.0010 (3/2980) 0 * Os_TE_857534 Os_TE_857519 Chr1 39958568 39958569 - TYPEM 227 0.0003 (1/2963) 0 * Os_TE_857518 Os_TE_857518 Chr1 39958567 39958566 - ORSgTEMT02400179 221 0.0003 (1/2944) 0 * Os_TE_857519 Os_TE_857502 Chr1 39951640 39951641 - COPI2_LTR 4733 0.0003 (1/2990) 0 * Os_TE_857501 Os_TE_857501 Chr1 39951636 39951635 + COPI2_LTR 4733 0.0003 (1/2991) 0 * Os_TE_857502 Os_TE_857480 Chr1 39930916 39930915 - NDNA2TNA_OS 346 0.0179 (53/2966) 0 * Os_TE_857479 Os_TE_857479 Chr1 39930909 39930910 + NDNA2TNA_OS 346 0.0181 (54/2976) 0 * Os_TE_857480 Os_TE_857468 Chr1 39921638 39921639 + OSTE33 1012 0.0003 (1/2976) 0 * * Os_TE_857448 Chr1 39908106 39908107 + COPIA2-LTR_OS 6433 0.0010 (3/2982) 0 * Os_TE_857447 Os_TE_857447 Chr1 39908102 39908101 - COPIA2-LTR_OS 6433 0.0010 (3/2984) 0 * Os_TE_857448 Os_TE_857441 Chr1 39906753 39906754 + RIREX_LTR 8828 0.0017 (5/2991) 0 * Os_TE_857440 Os_TE_857440 Chr1 39906749 39906748 - RIREX_LTR 8828 0.0017 (5/2988) 0 * Os_TE_857441 Os_TE_857439 Chr1 39906619 39906620 - MPING 430 0.0007 (2/2986) 0 * Os_TE_857438 Os_TE_857438 Chr1 39906617 39906616 + MPING 430 0.0007 (2/2991) 0 * Os_TE_857439 Os_TE_857435 Chr1 39905071 39905072 + RIREX_LTR 8828 0.0003 (1/2995) 0 * Os_TE_857434 Os_TE_857434 Chr1 39905067 39905066 - RIREX_LTR 8828 0.0003 (1/2998) 0 * Os_TE_857435 Os_TE_857410 Chr1 39893354 39893353 + ORSgTEMT01601591 242 0.0003 (1/2996) 0 * * Os_TE_857375 Chr1 39868216 39868215 + STOWAWAY51_OS 246 0.0003 (1/2916) 0 * Os_TE_857374 Os_TE_857374 Chr1 39868210 39868211 - STOWAWAY51_OS 246 0.0003 (1/2918) 0 * Os_TE_857375 Os_TE_857371 Chr1 39865606 39865607 - OLO24 345 0.0003 (1/2991) 0 * Os_TE_857370 Os_TE_857370 Chr1 39865604 39865603 + OLO24 345 0.0003 (1/2992) 0 * Os_TE_857371 Os_TE_857361 Chr1 39864165 39864166 + STOWAWAY51_OS 246 0.0020 (6/2995) 0 * * Os_TE_857344 Chr1 39856212 39856213 - INDITTO 263 0.0007 (2/2983) 0 * Os_TE_857343 Os_TE_857343 Chr1 39856210 39856209 + INDITTO 263 0.0007 (2/2871) 0 * Os_TE_857344 Os_TE_857341 Chr1 39852461 39852462 - COPI2_LTR 4733 0.0030 (9/2991) 0 * Os_TE_857340 Os_TE_857340 Chr1 39852457 39852456 + COPI2_LTR 4733 0.0030 (9/2992) 0 * Os_TE_857341 Os_TE_857334 Chr1 39849363 39849364 + SC-8_LTR 4951 0.0003 (1/2995) 0 * Os_TE_857333 Os_TE_857333 Chr1 39849359 39849358 - SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_857334 Os_TE_857331 Chr1 39848038 39848039 + SC-8_LTR 4951 0.0231 (69/2992) 0 * Os_TE_857330 Os_TE_857330 Chr1 39848034 39848033 - SC-8_LTR 4951 0.0237 (71/2993) 0 * Os_TE_857331 Os_TE_857325 Chr1 39842109 39842110 - COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_857324 Os_TE_857324 Chr1 39842105 39842104 + COPI2_LTR 4733 0.0003 (1/2992) 0 * Os_TE_857325 Os_TE_857323 Chr1 39841928 39841929 + ORSiTETN00100011 676 0.0267 (80/2992) 0 * Os_TE_857322 Os_TE_857322 Chr1 39841919 39841918 + DS-RICE4N 715 0.0264 (79/2989) 0 * Os_TE_857323 Os_TE_857312 Chr1 39835759 39835424 + ORSgTEMT00101341 314 0.3623 (1039/2868) 1 Intact Os_TE_857311 Os_TE_857311 Chr1 39835423 39835758 + ORSgTEMT00100531 325 0.3938 (1155/2933) 1 Intact Os_TE_857312 Os_TE_857300 Chr1 39831135 39831134 + STOWAWAY51_OS 246 0.0003 (1/2999) 0 * * Os_TE_857268 Chr1 39810417 39810418 - RETRO2_LTR 12874 0.0060 (18/2980) 0 * Os_TE_857267 Os_TE_857267 Chr1 39810413 39810412 + RETRO2_LTR 12874 0.0064 (19/2985) 0 * Os_TE_857268 Os_TE_857257 Chr1 39806683 39806684 + MPING 430 0.0003 (1/2996) 0 * Os_TE_857256 Os_TE_857256 Chr1 39806681 39806680 - MPING 430 0.0003 (1/2995) 0 * Os_TE_857257 Os_TE_857251 Chr1 39804618 39804619 + COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_857250 Os_TE_857250 Chr1 39804614 39804613 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_857251 Os_TE_857203 Chr1 39779069 39779070 + ORSgTEMT01601591 242 0.0007 (2/2915) 0 * * Os_TE_857156 Chr1 39743406 39743407 - RIRE3_LTR 12054 0.0003 (1/2924) 0 * Os_TE_857155 Os_TE_857155 Chr1 39743402 39743401 + RIRE3_LTR 12054 0.0007 (2/2908) 0 * Os_TE_857156 Os_TE_857153 Chr1 39743082 39743083 - COPIA2-LTR_OS 6433 0.5285 (1519/2874) 0 * * Os_TE_857125 Chr1 39718894 39718895 + ORSgTEMT00600376 329 0.0203 (60/2954) 0 * Os_TE_857124 Os_TE_857124 Chr1 39718889 39718888 + ORSgTEMT00600272 361 0.0197 (58/2948) 0 * Os_TE_857125 Os_TE_857105 Chr1 39709192 39709193 + TYPEU4 402 0.0197 (59/2990) 0 * * Os_TE_857101 Chr1 39706356 39706357 - SC-3_LTR 5748 0.0007 (2/2993) 0 * Os_TE_857100 Os_TE_857100 Chr1 39706352 39706351 + ORSiTERTOOT00296 5553 0.0003 (1/2990) 0 * Os_TE_857101 Os_TE_857088 Chr1 39695992 39695991 + TWIF 586 0.0003 (1/2916) 0 * * Os_TE_857059 Chr1 39682552 39682551 + DITTO 244 0.0008 (2/2634) 0 * * Os_TE_857057 Chr1 39682305 39682304 + RPO_OS 1983 0.7791 (2250/2888) 0 * * Os_TE_857051 Chr1 39679451 39678455 - CACTA-K 1131 0.2382 (705/2960) 1 Intact Os_TE_857049 Os_TE_857049 Chr1 39678451 39679449 - CACTA-K 1131 0.2010 (581/2890) -1 Intact Os_TE_857051 Os_TE_857046 Chr1 39677741 39677742 - F770 284 0.0200 (60/2993) 0 * * Os_TE_857045 Chr1 39677454 39677453 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * * Os_TE_857041 Chr1 39676462 39676703 - ORSgTETNOOT01470 241 0.2131 (602/2825) 1 Intact * Os_TE_857032 Chr1 39675575 39675576 + TYPEU1 380 0.0119 (8/672) 0 * Os_TE_857031 Os_TE_857031 Chr1 39675567 39675566 - TYPEU1 380 0.7582 (1994/2630) 0 * Os_TE_857032 Os_TE_857029 Chr1 39675141 39675409 - YOUREN 286 0.2427 (707/2913) 1 Intact * Os_TE_857027 Chr1 39674884 39674885 - COPIA2-LTR_OS 6433 0.0003 (1/2969) 0 * Os_TE_857026 Os_TE_857026 Chr1 39674880 39674879 + COPIA2-LTR_OS 6433 0.0003 (1/2922) 0 * Os_TE_857027 Os_TE_857023 Chr1 39674779 39674778 + COWARD 200 0.7283 (1871/2569) 0 * * Os_TE_857018 Chr1 39673200 39672962 + ORSgTEMT01602580 283 0.2327 (688/2956) 1 Intact Os_TE_857017 Os_TE_857017 Chr1 39672962 39673200 + ORSgTEMT01600662 238 0.2329 (665/2855) 1 Intact Os_TE_857018 Os_TE_857016 Chr1 39672804 39672803 + ORSgTEMT00501326 148 0.7985 (2049/2566) 0 * * Os_TE_857009 Chr1 39672476 39672475 - MERMITE18D 1491 0.0255 (19/746) 0 * * Os_TE_857001 Chr1 39669387 39669388 - ORSiTERTOOT00402 2660 0.0033 (10/2987) 0 * * Os_TE_856997 Chr1 39666808 39666703 - ORSgTEMT01700216 124 0.2411 (699/2899) 1 Intact Os_TE_856995 Os_TE_856995 Chr1 39666705 39666806 - STOWAWAY1_OS 149 0.2336 (682/2919) 1 Intact Os_TE_856997 Os_TE_856993 Chr1 39665762 39665763 - INDITTO 263 0.0337 (101/2995) 0 * * Os_TE_856980 Chr1 39660883 39660884 - SC-3_LTR 5748 0.0003 (1/2945) 0 * Os_TE_856979 Os_TE_856979 Chr1 39660879 39660878 + ORSiTERTOOT00296 5553 0.0003 (1/2973) 0 * Os_TE_856980 Os_TE_856976 Chr1 39658725 39658726 + CLOUD 734 0.0005 (1/2021) -1 * * Os_TE_856949 Chr1 39642082 39642083 - SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_856948 Os_TE_856948 Chr1 39642078 39642077 + SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_856949 Os_TE_856944 Chr1 39638166 39638167 - SC-3_LTR 5748 0.0138 (41/2979) 0 * Os_TE_856943 Os_TE_856943 Chr1 39638162 39638161 + ORSiTERTOOT00296 5553 0.0131 (39/2980) 0 * Os_TE_856944 Os_TE_856939 Chr1 39634460 39634461 - RETROSAT2LTR 12796 0.1083 (198/1829) 0 * Os_TE_856938 Os_TE_856938 Chr1 39634458 39634457 + RETROSAT2LTR 12796 0.0583 (100/1715) 0 * Os_TE_856939 Os_TE_856935 Chr1 39632265 39632266 + TRUNCATOR 2918 0.0017 (5/2996) 0 * Os_TE_856934 Os_TE_856934 Chr1 39632259 39632258 - ORSiTERT00200154 9386 0.0017 (5/2996) 0 * Os_TE_856935 Os_TE_856884 Chr1 39617050 39617051 - SC-8_LTR 4951 0.0003 (1/2991) 0 * Os_TE_856883 Os_TE_856883 Chr1 39617046 39617045 + SC-8_LTR 4951 0.0003 (1/2989) 0 * Os_TE_856884 Os_TE_856814 Chr1 39575465 39575466 - COPIA2-LTR_OS 6433 0.3983 (1188/2983) 0 * Os_TE_856813 Os_TE_856813 Chr1 39575461 39575460 + COPIA2-LTR_OS 6433 0.3972 (1181/2973) 0 * Os_TE_856814 Os_TE_856799 Chr1 39573927 39573928 + MPING 430 0.0003 (1/2986) 0 * Os_TE_856798 Os_TE_856798 Chr1 39573925 39573924 - MPING 430 0.0003 (1/2988) 0 * Os_TE_856799 Os_TE_856786 Chr1 39565455 39565456 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_856785 Os_TE_856785 Chr1 39565451 39565450 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_856786 Os_TE_856779 Chr1 39561936 39561937 - INDITTO 263 0.0007 (2/2935) 0 * * Os_TE_856777 Chr1 39561452 39561451 - TREP219 104 0.0212 (58/2739) 0 * Os_TE_856776 Os_TE_856776 Chr1 39561449 39561450 + TREP219 104 0.0189 (51/2703) 0 * Os_TE_856777 Os_TE_856774 Chr1 39561372 39561371 - ORSgTEMT00600085 364 0.0210 (55/2620) 0 * * Os_TE_856733 Chr1 39535228 39535227 + STOWAWAY51_OS 246 0.0003 (1/2962) 0 * Os_TE_856732 Os_TE_856732 Chr1 39535222 39535223 + ORSgTEMT01601591 242 0.0003 (1/2961) 0 * Os_TE_856733 Os_TE_856720 Chr1 39531781 39531782 - MuDR4_OS 7610 0.0177 (53/2988) 0 * Os_TE_856719 Os_TE_856719 Chr1 39531778 39531777 - MuDR4_OS 7610 0.0201 (60/2990) 0 * Os_TE_856720 Os_TE_856716 Chr1 39531428 39531429 + ORSgTEMT01601591 242 0.0174 (52/2982) 0 * * Os_TE_856710 Chr1 39527952 39527951 + ORSgTEMT01701115 144 0.0206 (61/2968) 0 * * Os_TE_856688 Chr1 39516364 39516363 - ORSgTEMT00900099 250 0.0202 (60/2975) 0 * Os_TE_856687 Os_TE_856687 Chr1 39516360 39516361 + ORSgTEMT00901844 250 0.0209 (61/2914) 0 * Os_TE_856688 Os_TE_856685 Chr1 39515670 39511317 - MuDR3_OS 8604 0.2148 (643/2993) 1 Intact * Os_TE_856674 Chr1 39508836 39508835 + ORSiTEMT06800002 376 0.0201 (60/2978) 0 * * Os_TE_856661 Chr1 39505398 39505399 + STOWAWAY11_OS 292 0.0210 (61/2908) 0 * Os_TE_856660 Os_TE_856660 Chr1 39505397 39505396 - STOWAWAY11_OS 292 0.0206 (60/2907) 0 * Os_TE_856661 Os_TE_856646 Chr1 39495514 39495515 - SC-3_LTR 5748 0.0077 (23/2994) 0 * * Os_TE_856641 Chr1 39492820 39492819 - SUSU 279 0.0003 (1/2907) 0 * * Os_TE_856625 Chr1 39483566 39483567 - SUSU 279 0.0017 (4/2408) 0 * Os_TE_856624 Os_TE_856624 Chr1 39483564 39483563 + ORSgTEMT05000092 279 0.0014 (4/2840) 0 * Os_TE_856625 Os_TE_856614 Chr1 39474923 39474924 + COPIA2-LTR_OS 6433 0.0003 (1/2967) 0 * Os_TE_856613 Os_TE_856613 Chr1 39474919 39474918 - COPIA2-LTR_OS 6433 0.0003 (1/2945) 0 * Os_TE_856614 Os_TE_856602 Chr1 39467633 39467632 - ORSgTEMT01700029 143 0.0381 (114/2992) 0 * Os_TE_856601 Os_TE_856601 Chr1 39467630 39467631 + ORSgTEMT01701104 154 0.0384 (115/2991) 0 * Os_TE_856602 Os_TE_856582 Chr1 39454054 39454055 + ORSiTERTOOT00296 5553 0.0003 (1/2990) 0 * Os_TE_856581 Os_TE_856581 Chr1 39454050 39454049 - SC-3_LTR 5748 0.0003 (1/2984) 0 * Os_TE_856582 Os_TE_856575 Chr1 39448935 39448936 - COPIA2-LTR_OS 6433 0.2749 (823/2994) 0 * Os_TE_856574 Os_TE_856574 Chr1 39448931 39448930 + COPIA2-LTR_OS 6433 0.2756 (825/2993) 0 * Os_TE_856575 Os_TE_856572 Chr1 39446990 39446760 - ORSgTEMT01601665 238 0.6101 (1771/2903) 1 Intact * Os_TE_856562 Chr1 39436236 39436237 - ORSgTETNOOT01600 224 0.0158 (47/2971) 0 * * Os_TE_856556 Chr1 39429980 39429981 - COPI2_LTR 4733 0.0010 (3/2995) 0 * Os_TE_856555 Os_TE_856555 Chr1 39429976 39429975 + COPI2_LTR 4733 0.0013 (4/2996) 0 * Os_TE_856556 Os_TE_856553 Chr1 39427731 39427732 - OSTE15 1168 0.0010 (3/2989) 0 * * Os_TE_856552 Chr1 39427702 39427701 + STOWAWAY51_OS 246 0.0007 (2/2985) 0 * * Os_TE_856546 Chr1 39425689 39425688 - ORSgTEMT00900741 219 0.0007 (2/2931) 0 * Os_TE_856545 Os_TE_856545 Chr1 39425687 39425688 + ORSgTEMT00900266 245 0.0007 (2/2934) 0 * Os_TE_856546 Os_TE_856537 Chr1 39420309 39419536 - DNAUN1_OS 408 0.2463 (733/2976) 1 Intact * Os_TE_856524 Chr1 39415706 39415707 - NDNA1TNA_OS 334 0.0003 (1/2970) 0 * * Os_TE_856504 Chr1 39408028 39408029 - NDNA1TNA_OS 334 0.0007 (2/2983) 0 * Os_TE_856503 Os_TE_856503 Chr1 39408027 39408026 + NDNA1TNA_OS 334 0.0007 (2/2990) 0 * Os_TE_856504 Os_TE_856502 Chr1 39407757 39403043 + ORSiTERTOOT00020 2547 0.2436 (727/2984) 1 Intact Os_TE_856500 Os_TE_856500 Chr1 39403043 39407757 - OSCOPIA1_LTR 4754 0.2475 (741/2994) 1 Intact Os_TE_856502 Os_TE_856487 Chr1 39398589 39398590 + NDNA1TNA_OS 334 0.0204 (61/2992) 0 * Os_TE_856486 Os_TE_856486 Chr1 39398587 39398586 - NDNA1TNA_OS 334 0.0200 (60/2997) 0 * Os_TE_856487 Os_TE_856482 Chr1 39395200 39395199 - COPI2_LTR 4733 0.0003 (1/2974) 0 * * Os_TE_856479 Chr1 39393893 39393894 - STOWAWAY11_OS 292 0.0007 (2/2975) 0 * * Os_TE_856424 Chr1 39368714 39368715 - SC-8_LTR 4951 0.0003 (1/2973) 0 * Os_TE_856423 Os_TE_856423 Chr1 39368710 39368709 + SC-8_LTR 4951 0.0003 (1/2973) 0 * Os_TE_856424 Os_TE_856402 Chr1 39354767 39354768 + STOWAWAY13_OS 251 0.3468 (1014/2924) 0 * Os_TE_856401 Os_TE_856401 Chr1 39354766 39354765 - STOWAWAY13_OS 251 0.3561 (1057/2968) 0 * Os_TE_856402 Os_TE_856398 Chr1 39354292 39354291 - ORSgTEMT01400009 212 0.2281 (682/2990) 0 * * Os_TE_856395 Chr1 39353179 39352820 - TYPEU 362 0.2963 (885/2987) 1 Intact * Os_TE_856390 Chr1 39352099 39352098 - RETROSAT4_LTR 13504 0.0154 (46/2981) 0 * * Os_TE_856381 Chr1 39348570 39348569 + RETRO2_LTR 12874 0.0032 (9/2773) 0 * * Os_TE_856346 Chr1 39335326 39335090 - ORSgTEMT00900099 250 0.3022 (903/2988) 1 Intact * Os_TE_856334 Chr1 39333138 39333137 - TYPEM 227 0.0550 (48/872) 0 * * Os_TE_856280 Chr1 39321623 39321622 - ORSgTEMT02400179 221 0.0050 (15/2998) 0 * * Os_TE_856271 Chr1 39314196 39314195 + Cassandra_OS-LTR 764 0.0010 (3/2974) 0 * * Os_TE_856264 Chr1 39311097 39310477 + DS-RICE2N 613 0.2570 (766/2981) 1 Intact Os_TE_856261 Os_TE_856261 Chr1 39310477 39311097 - DS-RICE2N 613 0.2595 (775/2986) 1 Intact Os_TE_856264 Os_TE_856259 Chr1 39308925 39308924 + ORSgTEMT02400034 225 0.0405 (121/2984) 0 * Os_TE_856258 Os_TE_856258 Chr1 39308921 39308922 - ORSgTEMT02400246 177 0.0399 (119/2985) 0 * Os_TE_856259 Os_TE_856255 Chr1 39307391 39305954 + OSTE33 1012 0.2618 (784/2995) 1 Intact Os_TE_856253 Os_TE_856253 Chr1 39305954 39307390 + OSTE33 1012 0.2578 (770/2987) 1 Intact Os_TE_856255 Os_TE_856246 Chr1 39301707 39301708 - OSTE24 683 0.0010 (3/2965) 0 * * Os_TE_856239 Chr1 39300587 39300588 - MPING 430 0.0003 (1/2989) 0 * Os_TE_856238 Os_TE_856238 Chr1 39300585 39300584 + MPING 430 0.0005 (1/1843) 0 * Os_TE_856239 Os_TE_856230 Chr1 39293718 39293719 - TRUNCATOR2_LTR 2904 0.4859 (1446/2976) 0 * Os_TE_856229 Os_TE_856229 Chr1 39293714 39293713 + ORSiCMCM00100019 2717 0.4757 (1401/2945) 0 * Os_TE_856230 Os_TE_856208 Chr1 39286798 39286799 + NDNA1TNA_OS 334 0.0176 (51/2904) 0 * Os_TE_856207 Os_TE_856207 Chr1 39286796 39286795 - NDNA1TNA_OS 334 0.0172 (50/2908) 0 * Os_TE_856208 Os_TE_856206 Chr1 39286721 39286722 + OSTE33 1012 0.1957 (495/2530) 0 * Os_TE_856205 Os_TE_856205 Chr1 39286712 39286711 + OSTE33 1012 0.2101 (548/2608) 0 * Os_TE_856206 Os_TE_856146 Chr1 39257098 39257097 - RETRO2_LTR 12874 0.1985 (594/2992) 0 * * Os_TE_856137 Chr1 39254644 39254643 + ORSgTEMT01601591 242 0.0003 (1/2997) 0 * * Os_TE_856133 Chr1 39252841 39252842 + TWIF 586 0.0003 (1/2921) 0 * Os_TE_856132 Os_TE_856132 Chr1 39252834 39252833 - ORSiTETNOOT00134 607 0.0003 (1/2918) 0 * Os_TE_856133 Os_TE_856102 Chr1 39241740 39241741 + ORSiTERTOOT00296 5553 0.0003 (1/2997) 0 * Os_TE_856101 Os_TE_856101 Chr1 39241736 39241735 - SC-3_LTR 5748 0.0003 (1/2998) 0 * Os_TE_856102 Os_TE_856100 Chr1 39241252 39241251 - SZ-54_LTR 5203 0.0181 (54/2987) 0 * * Os_TE_856047 Chr1 39210297 39210298 + ORSgTEMT00300063 413 0.0003 (1/2974) 0 * * Os_TE_856046 Chr1 39210296 39210295 + ORSgTETNOOT00908 242 0.0208 (62/2982) 0 * * Os_TE_856045 Chr1 39210291 39210292 - ORSgTEMT00300160 419 0.0003 (1/2978) 0 * * Os_TE_856038 Chr1 39209640 39209639 + RETROSAT4_LTR 13504 0.7311 (2110/2886) 0 * * Os_TE_855989 Chr1 39198196 39198195 - RETRO2_LTR 12874 0.0139 (41/2949) 0 * * Os_TE_855954 Chr1 39183221 39183419 - ORSgTEMT02000041 194 0.2662 (776/2915) 1 Intact * Os_TE_855948 Chr1 39176779 39176780 + TWIF 586 0.0003 (1/2981) 0 * Os_TE_855947 Os_TE_855947 Chr1 39176771 39176770 - ORSiTETNOOT00134 607 0.0003 (1/2989) 0 * Os_TE_855948 Os_TE_855946 Chr1 39176758 39176759 + NDNA1TNA_OS 334 0.0090 (27/2993) 0 * Os_TE_855945 Os_TE_855945 Chr1 39176756 39176755 - NDNA1TNA_OS 334 0.0094 (28/2990) 0 * Os_TE_855946 Os_TE_855941 Chr1 39173885 39173886 + COPI2_LTR 4733 0.0003 (1/2959) 0 * Os_TE_855940 Os_TE_855940 Chr1 39173881 39173880 - COPI2_LTR 4733 0.0003 (1/2965) 0 * Os_TE_855941 Os_TE_855939 Chr1 39173800 39173799 + ORSiTETNOOT00107 906 0.0066 (19/2876) 0 * Os_TE_855938 Os_TE_855938 Chr1 39173796 39173797 - ORSiTETNOOT00107 906 0.0063 (18/2862) 0 * Os_TE_855939 Os_TE_855934 Chr1 39173452 39173453 - MDR3 6978 0.0021 (6/2924) 0 * Os_TE_855933 Os_TE_855933 Chr1 39173445 39173444 - MDR3 6978 0.0014 (4/2930) 0 * Os_TE_855934 Os_TE_855928 Chr1 39172298 39172297 - SZ-62LTR 3649 0.0003 (1/2961) 0 * * Os_TE_855927 Chr1 39172279 39172280 + SETARIA2 1142 0.0192 (57/2970) 0 * Os_TE_855926 Os_TE_855926 Chr1 39172275 39172274 + SETARIA2 1142 0.0202 (60/2972) 0 * Os_TE_855927 Os_TE_855905 Chr1 39166491 39166492 - INDITTO 263 0.0007 (2/2981) 0 * Os_TE_855904 Os_TE_855904 Chr1 39166489 39166488 + INDITTO 263 0.0007 (2/2974) 0 * Os_TE_855905 Os_TE_855902 Chr1 39165933 39165934 + NDNA1TNA_OS 334 0.0290 (86/2966) 0 * Os_TE_855901 Os_TE_855901 Chr1 39165931 39165930 - OLO24 345 0.0093 (27/2906) 0 * Os_TE_855902 Os_TE_855899 Chr1 39164880 39164881 - SC-3_LTR 5748 0.0007 (2/2995) 0 * Os_TE_855898 Os_TE_855898 Chr1 39164876 39164875 + ORSiTERTOOT00296 5553 0.0007 (2/2993) 0 * Os_TE_855899 Os_TE_855865 Chr1 39153137 39153138 - INDITTO 263 0.0035 (10/2869) 0 * Os_TE_855864 Os_TE_855864 Chr1 39153135 39153134 + INDITTO 263 0.0031 (9/2874) 0 * Os_TE_855865 Os_TE_855863 Chr1 39153128 39153127 - ORSgTEMT00901071 248 0.0189 (55/2906) 0 * Os_TE_855862 Os_TE_855862 Chr1 39153124 39153125 + ORSgTEMT00900319 250 0.0362 (107/2954) 0 * Os_TE_855863 Os_TE_855861 Chr1 39152816 39152817 + MPING 430 0.0034 (10/2985) 0 * Os_TE_855860 Os_TE_855860 Chr1 39152814 39152813 - MPING 430 0.0037 (11/2982) 0 * Os_TE_855861 Os_TE_855842 Chr1 39149742 39149484 - INDITTO 263 0.2441 (729/2986) 1 Intact Os_TE_855840 Os_TE_855840 Chr1 39149480 39149742 - ORSgTETNOOT00053 263 0.2435 (728/2990) 1 Intact Os_TE_855842 Os_TE_855822 Chr1 39147459 39147460 - EnSpm-13_OS 11171 0.0003 (1/2982) 0 * Os_TE_855821 Os_TE_855821 Chr1 39147457 39147456 + EnSpm-13_OS 11171 0.0003 (1/2980) 0 * Os_TE_855822 Os_TE_855820 Chr1 39147396 39147397 + INDITTO 263 0.0322 (96/2986) 0 * Os_TE_855819 Os_TE_855819 Chr1 39147394 39147393 - INDITTO 263 0.0329 (98/2981) 0 * Os_TE_855820 Os_TE_855816 Chr1 39145511 39145512 + MPING 430 0.0003 (1/2999) 0 * Os_TE_855815 Os_TE_855815 Chr1 39145509 39145508 - MPING 430 0.0003 (1/2997) 0 * Os_TE_855816 Os_TE_855761 Chr1 39106890 39106891 + COPIA2-LTR_OS 6433 0.0003 (1/2870) 0 * Os_TE_855760 Os_TE_855760 Chr1 39106886 39106885 - COPIA2-LTR_OS 6433 0.0003 (1/2866) 0 * Os_TE_855761 Os_TE_855759 Chr1 39106846 39106847 + TWIF 586 0.0003 (1/2876) 0 * Os_TE_855758 Os_TE_855758 Chr1 39106839 39106838 - ORSiTETNOOT00134 607 0.0003 (1/2875) 0 * Os_TE_855759 Os_TE_855751 Chr1 39104354 39104355 - COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_855750 Os_TE_855750 Chr1 39104350 39104349 + COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_855751 Os_TE_855747 Chr1 39100391 39100392 + ORSgTEMT01700715 134 0.0206 (61/2963) 0 * Os_TE_855746 Os_TE_855746 Chr1 39100385 39100384 + ORSgTEMT01701265 147 0.0199 (59/2968) 0 * Os_TE_855747 Os_TE_855738 Chr1 39099192 39099191 + STOWAWAY43_OS 233 0.0017 (5/2975) 0 * Os_TE_855737 Os_TE_855737 Chr1 39099189 39099190 - STOWAWAY43_OS 233 0.0013 (4/2978) 0 * Os_TE_855738 Os_TE_855736 Chr1 39099071 39099070 + ORSiTEMT03300001 145 0.0180 (53/2940) 0 * Os_TE_855735 Os_TE_855735 Chr1 39099070 39099071 - UNIQUE 158 0.0187 (55/2944) 0 * Os_TE_855736 Os_TE_855723 Chr1 39097409 39097410 - RIREX_LTR 8828 0.0010 (3/2978) 0 * * Os_TE_855722 Chr1 39097308 39097309 - COPIA2-LTR_OS 6433 0.0003 (1/2958) 0 * Os_TE_855721 Os_TE_855721 Chr1 39097304 39097303 + COPIA2-LTR_OS 6433 0.0003 (1/2964) 0 * Os_TE_855722 Os_TE_855718 Chr1 39096863 39096862 + TREP215 239 0.0004 (1/2833) 0 * * Os_TE_855712 Chr1 39096317 39096318 - RETRO1_LTR 8314 0.0003 (1/2960) 0 * * Os_TE_855702 Chr1 39089784 39089785 - SC-3_LTR 5748 0.0007 (2/2988) 0 * Os_TE_855701 Os_TE_855701 Chr1 39089780 39089779 + ORSiTERTOOT00296 5553 0.0007 (2/2983) 0 * Os_TE_855702 Os_TE_855700 Chr1 39089156 39089157 + SC-8_LTR 4951 0.0003 (1/2982) 0 * Os_TE_855699 Os_TE_855699 Chr1 39089152 39089151 - SC-8_LTR 4951 0.0003 (1/2986) 0 * Os_TE_855700 Os_TE_855687 Chr1 39082122 39082123 + SC-8_LTR 4951 0.0003 (1/2998) 0 * Os_TE_855686 Os_TE_855686 Chr1 39082118 39082117 - SC-8_LTR 4951 0.0003 (1/2997) 0 * Os_TE_855687 Os_TE_855684 Chr1 39078462 39078463 + OLO24 345 0.0003 (1/2905) 0 * * Os_TE_855664 Chr1 39070468 39070467 - ORSgTEMT01600639 228 0.0003 (1/2971) 0 * * Os_TE_855644 Chr1 39061751 39061752 - RETROSAT2LTRA 3112 0.0003 (1/2956) 0 * * Os_TE_855617 Chr1 39056386 39056385 - GYPSY-A_LTR 8951 0.0007 (2/2986) 0 * * Os_TE_855592 Chr1 39047758 39047759 - ORSgTEMT00100582 334 0.5160 (1468/2845) 0 * Os_TE_855591 Os_TE_855591 Chr1 39047757 39047756 + NDNA1TNA_OS 334 0.5315 (1562/2939) 0 * Os_TE_855592 Os_TE_855587 Chr1 39047357 39047356 + NDNA1TNA_OS 334 0.5198 (1497/2880) 0 * Os_TE_855586 Os_TE_855586 Chr1 39047356 39047357 + ORSgTEMT00101674 340 0.5364 (1591/2966) 0 * Os_TE_855587 Os_TE_855572 Chr1 39042715 39042714 + STOWAWAY51_OS 246 0.0013 (4/2976) 0 * Os_TE_855571 Os_TE_855571 Chr1 39042709 39042710 - STOWAWAY51_OS 246 0.0013 (4/2980) 0 * Os_TE_855572 Os_TE_855570 Chr1 39042444 39042443 + OSMU5 4881 0.0261 (78/2987) 0 * * Os_TE_855568 Chr1 39039501 39039502 + ORSgTETNOOT00908 242 0.0226 (66/2917) 0 * * Os_TE_855558 Chr1 39037731 39037730 + TWIFB1 3737 0.0007 (2/2948) 0 * * Os_TE_855557 Chr1 39037190 39037189 + OSTONOR1_LTR 6440 0.0007 (2/2998) 0 * * Os_TE_855548 Chr1 39031821 39031822 - ORSgTETNOOT01607 258 0.0291 (87/2988) 0 * Os_TE_855547 Os_TE_855547 Chr1 39031820 39031819 + STOWAWAY17_OS 259 0.0291 (87/2993) 0 * Os_TE_855548 Os_TE_855542 Chr1 39022616 39022617 - INDITTO 263 0.0297 (89/2996) 0 * Os_TE_855541 Os_TE_855541 Chr1 39022614 39022613 + INDITTO 263 0.0280 (84/2996) 0 * Os_TE_855542 Os_TE_855539 Chr1 39021830 39021831 + TWIFBIG 3567 0.0007 (2/2920) 0 * Os_TE_855538 Os_TE_855538 Chr1 39021823 39021822 - ORSiTETNOOT00216 3569 0.0007 (2/2996) 0 * Os_TE_855539 Os_TE_855536 Chr1 39021070 39021069 - STOWAWAY51_OS 246 0.0249 (24/963) 0 * Os_TE_855535 Os_TE_855535 Chr1 39021064 39021065 + STOWAWAY51_OS 246 0.0073 (22/2998) 0 * Os_TE_855536 Os_TE_855507 Chr1 39003888 39003889 - ORSgTEMT01601432 239 0.0010 (3/2997) 0 * * Os_TE_855502 Chr1 38998090 38998091 + ORSiTERTOOT00226 792 0.0003 (1/2983) 0 * Os_TE_855501 Os_TE_855501 Chr1 38998086 38998085 - SZ-22_LTR 4403 0.0003 (1/2990) 0 * Os_TE_855502 Os_TE_855492 Chr1 38987347 38987346 - ORSgTEMT02400246 177 0.0010 (3/2991) 0 * * Os_TE_855475 Chr1 38983286 38983285 - STOWAWAY1_OS 149 0.0281 (84/2985) 0 * * Os_TE_855468 Chr1 38978755 38978756 + ORSgTEMT01601591 242 0.0007 (2/2997) 0 * * Os_TE_855466 Chr1 38977127 38977126 - ORSgTEMT00600085 364 0.0010 (3/2987) 0 * * Os_TE_855450 Chr1 38971624 38971625 + ORSgTETNOOT02019 240 0.0458 (137/2994) 0 * * Os_TE_855438 Chr1 38961639 38961640 + SC-8_LTR 4951 0.0010 (3/2992) 0 * Os_TE_855437 Os_TE_855437 Chr1 38961635 38961634 - SC-8_LTR 4951 0.0010 (3/2995) 0 * Os_TE_855438 Os_TE_855427 Chr1 38955604 38955605 + RIRE3_LTR 12054 0.7051 (2106/2987) 0 * * Os_TE_855420 Chr1 38952136 38952137 + SZ-22_LTR 4403 0.0007 (2/2998) 0 * * Os_TE_855417 Chr1 38950842 38950841 + ORSgTEMT01601591 242 0.0187 (56/2991) 0 * Os_TE_855416 Os_TE_855416 Chr1 38950836 38950837 + STOWAWAY51_OS 246 0.0187 (56/2997) 0 * Os_TE_855417 Os_TE_855412 Chr1 38949517 38949518 + CASTAWAY-3 314 0.0072 (21/2936) 0 * * Os_TE_855381 Chr1 38935349 38935350 - ORSgTETNOOT00053 263 0.0347 (104/2994) 0 * Os_TE_855380 Os_TE_855380 Chr1 38935347 38935346 - INDITTO 263 0.0341 (102/2993) 0 * Os_TE_855381 Os_TE_855379 Chr1 38934323 38934228 - TNR2A 152 0.3334 (969/2906) 1 Intact Os_TE_855378 Os_TE_855378 Chr1 38934226 38934323 + TNR2A 152 0.3176 (951/2994) 1 Intact Os_TE_855379 Os_TE_855363 Chr1 38922622 38922623 + ORSgTEMT00700017 386 0.0007 (2/2823) 0 * * Os_TE_855352 Chr1 38910224 38910225 + SC-8_LTR 4951 0.0007 (2/2992) 0 * Os_TE_855351 Os_TE_855351 Chr1 38910220 38910219 - SC-8_LTR 4951 0.0007 (2/2992) 0 * Os_TE_855352 Os_TE_855344 Chr1 38905776 38905775 + STOWAWAY1_OS 149 0.0041 (12/2950) 0 * * Os_TE_855343 Chr1 38905775 38905776 + ORSgTEMT01700414 154 0.0045 (13/2872) 0 * * Os_TE_855342 Chr1 38905763 38905762 - ORSgTEMT01600639 228 0.0251 (74/2948) 0 * * Os_TE_855341 Chr1 38905760 38905761 - ORSgTEMT01600101 235 0.0245 (72/2937) 0 * * Os_TE_855339 Chr1 38905101 38905102 + SZ-9LTR 965 0.0045 (11/2420) 0 * Os_TE_855338 Os_TE_855338 Chr1 38905097 38905096 - SZ-9LTR 965 0.0051 (13/2533) 0 * Os_TE_855339 Os_TE_855309 Chr1 38896836 38896837 - COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_855308 Os_TE_855308 Chr1 38896832 38896831 + COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_855309 Os_TE_855290 Chr1 38875878 38875877 + STOWAWAY44_OS 240 0.0003 (1/2957) 0 * Os_TE_855289 Os_TE_855289 Chr1 38875875 38875876 - STOWAWAY44_OS 240 0.0003 (1/2954) 0 * Os_TE_855290 Os_TE_855288 Chr1 38874853 38874852 - STOWAWAY51_OS 246 0.0003 (1/2996) 0 * Os_TE_855287 Os_TE_855287 Chr1 38874850 38874851 - STOWAWAY44_OS 240 0.0003 (1/2995) 0 * Os_TE_855288 Os_TE_855282 Chr1 38863710 38863936 + STOWAWAY44_OS 240 0.2993 (881/2944) 1 Intact * Os_TE_855273 Chr1 38861630 38860313 + SZ-30_LTR 6377 0.2968 (885/2982) 1 Solo_LTR Os_TE_855272 Os_TE_855272 Chr1 38860313 38861630 - SZ-30_LTR 6377 0.3127 (889/2843) 1 Solo_LTR Os_TE_855273 Os_TE_855266 Chr1 38857819 38858068 - ORSgTEMT00901171 250 0.2967 (886/2986) 1 Intact * Os_TE_855265 Chr1 38857723 38857724 + RIREX_LTR 8828 0.0007 (2/2847) 0 * Os_TE_855264 Os_TE_855264 Chr1 38857719 38857718 - RIREX_LTR 8828 0.0007 (2/2956) 0 * Os_TE_855265 Os_TE_855263 Chr1 38857681 38856188 + SETARIA 1402 0.2946 (879/2984) 1 Intact Os_TE_855257 Os_TE_855257 Chr1 38856188 38857681 - SETARIA1 1293 0.2902 (859/2960) 1 Intact Os_TE_855263 Os_TE_855235 Chr1 38841100 38841101 + RETRO2_LTR 12874 0.6594 (1969/2986) 0 * Os_TE_855234 Os_TE_855234 Chr1 38841096 38841095 - RETRO2_LTR 12874 0.6571 (1953/2972) 0 * Os_TE_855235 Os_TE_855231 Chr1 38838528 38838529 - RIRE2_LTR 11306 0.0028 (3/1083) 0 * * Os_TE_855226 Chr1 38838150 38838149 + ORSgTERT00201382 11280 0.0019 (2/1072) 0 * * Os_TE_855225 Chr1 38837869 38837868 + F770 284 0.0149 (16/1074) 0 * * Os_TE_855224 Chr1 38836640 38825720 + SPMLIKE 10989 0.3190 (886/2777) -1 Intact Os_TE_855216 Os_TE_855216 Chr1 38825719 38836639 - SPMLIKE 10989 0.8405 (875/1041) 1 Intact Os_TE_855224 Os_TE_855215 Chr1 38825535 38825536 - ORSgTERT00201216 11284 0.0010 (3/2976) 0 * Os_TE_855214 Os_TE_855214 Chr1 38825531 38825530 - RIRE2_LTR 11306 0.0010 (3/2978) 0 * Os_TE_855215 Os_TE_855212 Chr1 38825099 38825098 - ORSiTERTOOT00074 4935 0.0251 (75/2983) 0 * * Os_TE_855206 Chr1 38824554 38824555 + SPMLIKE 10989 0.0003 (1/2995) 0 * Os_TE_855205 Os_TE_855205 Chr1 38824552 38824551 - SPMLIKE 10989 0.0003 (1/2996) 0 * Os_TE_855206 Os_TE_855197 Chr1 38823261 38823260 - SEVERIN-2 1952 0.0446 (133/2984) 0 * * Os_TE_855196 Chr1 38823224 38823223 + MuDR-5_OS 17471 0.6380 (1900/2978) 0 * Os_TE_855195 Os_TE_855195 Chr1 38823223 38823224 - MuDR-5_OS 17471 0.6340 (1885/2973) 0 * Os_TE_855196 Os_TE_855173 Chr1 38814533 38814532 + COPI2_LTR 4733 0.0003 (1/2986) 0 * * Os_TE_855164 Chr1 38810483 38810482 + COPI2_LTR 4733 0.0003 (1/2996) 0 * * Os_TE_855156 Chr1 38806603 38806602 + RETRO2_LTR 12874 0.0071 (21/2963) 0 * * Os_TE_855154 Chr1 38806353 38806354 - SZ-48LTR 3632 0.0019 (5/2692) 0 * * Os_TE_855152 Chr1 38805379 38805380 - SZ-35LTR 3853 0.0010 (3/2970) 0 * Os_TE_855151 Os_TE_855151 Chr1 38805375 38805374 + RETROSAT4_LTR 13504 0.0007 (2/2966) 0 * Os_TE_855152 Os_TE_855137 Chr1 38801532 38801533 - ORSiTERTOOT00363 4650 0.0007 (2/2988) 0 * * Os_TE_855097 Chr1 38792414 38792413 + STOWAWAY51_OS 246 0.2507 (747/2980) 0 * * Os_TE_855045 Chr1 38770735 38770734 + COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * * Os_TE_855044 Chr1 38769896 38769895 - HELITRON3_OS 12693 0.0007 (2/2991) 0 * Os_TE_855043 Os_TE_855043 Chr1 38769895 38769896 + HELITRON3_OS 12693 0.0007 (2/2996) 0 * Os_TE_855044 Os_TE_855018 Chr1 38766689 38766688 - COPI2_LTR 4733 0.0030 (9/2968) 0 * * Os_TE_855016 Chr1 38766210 38766209 - SZ-22_LTR 4403 0.0007 (2/2966) 0 * * Os_TE_854968 Chr1 38747306 38747305 - ORSgTEMT02400246 177 0.0314 (94/2997) 0 * Os_TE_854967 Os_TE_854967 Chr1 38747302 38747303 + ORSgTEMT02400014 229 0.0324 (97/2998) 0 * Os_TE_854968 Os_TE_854932 Chr1 38728020 38728021 - COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * * Os_TE_854924 Chr1 38726773 38726774 + ORSgTETNOOT00908 242 0.0051 (14/2771) 0 * * Os_TE_854906 Chr1 38724527 38724528 + ORSgTEMT00600120 364 0.0010 (3/2874) 0 * * Os_TE_854904 Chr1 38722857 38722856 - ORSgTEMT00600304 361 0.0017 (5/2993) 0 * * Os_TE_854892 Chr1 38719477 38719476 + ORSgTETNOOT01219 231 0.0003 (1/2985) 0 * * Os_TE_854883 Chr1 38715438 38715439 - AMYLTP 383 0.0017 (5/2998) 0 * Os_TE_854882 Os_TE_854882 Chr1 38715430 38715429 + AMYLTP 383 0.0013 (4/2998) 0 * Os_TE_854883 Os_TE_854879 Chr1 38714664 38714665 - ORSgTEMT00600085 364 0.6008 (1800/2996) 0 * Os_TE_854878 Os_TE_854878 Chr1 38714662 38714661 + ORSgTEMT00600502 360 0.6009 (1799/2994) 0 * Os_TE_854879 Os_TE_854876 Chr1 38712753 38712754 + OSTONOR1_LTR 6440 0.0003 (1/2987) 0 * Os_TE_854875 Os_TE_854875 Chr1 38712749 38712748 - OSTONOR1_LTR 6440 0.0003 (1/2992) 0 * Os_TE_854876 Os_TE_854871 Chr1 38711912 38711913 - INDITTO 263 0.0050 (15/2981) 0 * Os_TE_854870 Os_TE_854870 Chr1 38711910 38711909 + INDITTO 263 0.0051 (15/2967) 0 * Os_TE_854871 Os_TE_854845 Chr1 38709208 38709207 - TRUNCATOR 2918 0.0010 (3/2989) 0 * Os_TE_854844 Os_TE_854844 Chr1 38709207 38709208 + TRUNCATOR 2918 0.0010 (3/2993) 0 * Os_TE_854845 Os_TE_854837 Chr1 38705039 38705040 + OSR3_LTR 5201 0.0007 (2/2970) 0 * Os_TE_854836 Os_TE_854836 Chr1 38705035 38705034 - OSR3_LTR 5201 0.0007 (2/2970) 0 * Os_TE_854837 Os_TE_854835 Chr1 38704429 38704430 + ORSgTEMT01900027 302 0.0017 (5/2983) 0 * * Os_TE_854819 Chr1 38702972 38702971 - MUDRN2_OS 756 0.0018 (5/2777) 0 * * Os_TE_854816 Chr1 38702667 38702666 - MERMITE18B 1306 0.0017 (5/2958) 0 * Os_TE_854815 Os_TE_854815 Chr1 38702666 38702667 - MERMITE18B 1306 0.0014 (4/2957) 0 * Os_TE_854816 Os_TE_854763 Chr1 38681371 38681370 - TYPEM 227 0.0003 (1/2996) 0 * * Os_TE_854755 Chr1 38675841 38675842 - ORSgTETNOOT01337 247 0.6778 (1759/2595) 0 * Os_TE_854754 Os_TE_854754 Chr1 38675839 38675838 - INDITTO 263 0.7191 (2058/2862) 0 * Os_TE_854755 Os_TE_854684 Chr1 38656667 38656668 - COPI2_LTR 4733 0.0003 (1/2991) 0 * Os_TE_854683 Os_TE_854683 Chr1 38656663 38656662 + COPI2_LTR 4733 0.0003 (1/2990) 0 * Os_TE_854684 Os_TE_854675 Chr1 38644693 38644694 + MPING 430 0.0007 (2/2943) 0 * Os_TE_854674 Os_TE_854674 Chr1 38644691 38644690 - MPING 430 0.0007 (2/2946) 0 * Os_TE_854675 Os_TE_854665 Chr1 38643782 38643781 - ORSgTEMT00600085 364 0.5580 (1668/2989) 0 * * Os_TE_854654 Chr1 38640749 38640750 + ORSgTEMT01602088 230 0.0023 (7/2996) 0 * Os_TE_854653 Os_TE_854653 Chr1 38640746 38640745 - ORSgTEMT01601432 239 0.0017 (5/2996) 0 * Os_TE_854654 Os_TE_854652 Chr1 38640743 38640744 + ORSgTEMT01602181 239 0.0023 (7/2996) 0 * * Os_TE_854649 Chr1 38639546 38639547 - RPO_OS 1983 0.0017 (5/2988) 0 * * Os_TE_854643 Chr1 38638787 38638786 + ORSgTEMT01400011 212 0.0004 (1/2683) 0 * * Os_TE_854642 Chr1 38638707 38638708 + COPI2_LTR 4733 0.0888 (266/2995) 0 * Os_TE_854641 Os_TE_854641 Chr1 38638703 38638702 - COPI2_LTR 4733 0.0891 (267/2997) 0 * Os_TE_854642 Os_TE_854635 Chr1 38631776 38631775 - STOWAWAY51_OS 246 0.0010 (3/2999) 0 * Os_TE_854634 Os_TE_854634 Chr1 38631770 38631771 + STOWAWAY51_OS 246 0.0010 (3/2999) 0 * Os_TE_854635 Os_TE_854632 Chr1 38627766 38627767 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_854631 Os_TE_854631 Chr1 38627762 38627761 + COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_854632 Os_TE_854621 Chr1 38626694 38626695 + ORSgTEMT00500020 148 0.0017 (5/2991) 0 * * Os_TE_854614 Chr1 38617976 38617977 - HARB-1_OS 5166 0.0020 (6/2988) 0 * Os_TE_854613 Os_TE_854613 Chr1 38617974 38617973 + HARB-1_OS 5166 0.0020 (6/2989) 0 * Os_TE_854614 Os_TE_854612 Chr1 38617170 38617169 + STOWAWAY51_OS 246 0.0037 (11/2961) 0 * Os_TE_854611 Os_TE_854611 Chr1 38617164 38617165 + ORSgTEMT01601591 242 0.0037 (11/2970) 0 * Os_TE_854612 Os_TE_854593 Chr1 38607355 38607356 - COPIA2-LTR_OS 6433 0.0007 (2/2996) 0 * Os_TE_854592 Os_TE_854592 Chr1 38607351 38607350 + COPIA2-LTR_OS 6433 0.0007 (2/2997) 0 * Os_TE_854593 Os_TE_854591 Chr1 38606806 38606807 - COPIA2-LTR_OS 6433 0.0003 (1/2979) 0 * * Os_TE_854589 Chr1 38606686 38606687 + MPING 430 0.0215 (64/2982) 0 * Os_TE_854588 Os_TE_854588 Chr1 38606684 38606683 - MPING 430 0.0215 (64/2980) 0 * Os_TE_854589 Os_TE_854575 Chr1 38603076 38603075 - STOWAWAY51_OS 246 0.0007 (2/2958) 0 * Os_TE_854574 Os_TE_854574 Chr1 38603070 38603071 + STOWAWAY51_OS 246 0.0007 (2/2959) 0 * Os_TE_854575 Os_TE_854554 Chr1 38598805 38598804 + MPING 430 0.0003 (1/2968) 0 * * Os_TE_854553 Chr1 38598583 38598584 + MPING 430 0.0003 (1/2867) 0 * * Os_TE_854500 Chr1 38577577 38577578 - BUHUI 375 0.0050 (15/2978) 0 * * Os_TE_854477 Chr1 38571052 38571051 + STOWAWAY51_OS 246 0.0003 (1/2982) 0 * Os_TE_854476 Os_TE_854476 Chr1 38571046 38571047 - STOWAWAY51_OS 246 0.0007 (2/2947) 0 * Os_TE_854477 Os_TE_854394 Chr1 38518835 38518836 + ORSiTERTOOT00027 10853 0.0003 (1/2996) 0 * * Os_TE_854383 Chr1 38516714 38516715 - ORSiTERTOOT00441 4741 0.0017 (5/2979) 0 * Os_TE_854382 Os_TE_854382 Chr1 38516710 38516709 + ORSiTERTOOT00441 4741 0.0017 (5/2975) 0 * Os_TE_854383 Os_TE_854381 Chr1 38515705 38515706 + ORSiTERTOOT00226 792 0.0003 (1/2989) 0 * * Os_TE_854378 Chr1 38514392 38514393 - STOWAWAY51_OS 246 0.0003 (1/2996) 0 * * Os_TE_854362 Chr1 38505401 38505400 + STOWAWAY51_OS 246 0.0013 (4/2997) 0 * * Os_TE_854359 Chr1 38505185 38505186 + MERMITED 1572 0.4752 (1411/2969) 0 * Os_TE_854358 Os_TE_854358 Chr1 38505183 38505182 + MERMITED 1572 0.4819 (1440/2988) 0 * Os_TE_854359 Os_TE_854357 Chr1 38504965 38504830 - OSTE18 129 0.3838 (1146/2986) 1 Intact Os_TE_854356 Os_TE_854356 Chr1 38504832 38504833 - NDNA1TNA_OS 334 0.3838 (1146/2986) 0.91 * Os_TE_854357 Os_TE_854316 Chr1 38490897 38490896 - ORSgTEMT01600639 228 0.0017 (5/2997) 0 * Os_TE_854315 Os_TE_854315 Chr1 38490894 38490895 - ORSgTEMT01601208 238 0.0020 (6/2998) 0 * Os_TE_854316 Os_TE_854304 Chr1 38487584 38487583 - STOWAWAY51_OS 246 0.0011 (3/2823) 0 * Os_TE_854303 Os_TE_854303 Chr1 38487578 38487579 + STOWAWAY51_OS 246 0.0011 (3/2841) 0 * Os_TE_854304 Os_TE_854302 Chr1 38487299 38487300 - ORSiTERTOOT00385 6000 0.0037 (10/2733) 0 * * Os_TE_854301 Chr1 38487071 38487072 - SZ-9LTR 965 0.1581 (205/1297) 0 * Os_TE_854300 Os_TE_854300 Chr1 38487067 38487066 + SZ-9LTR 965 0.1402 (179/1277) 0 * Os_TE_854301 Os_TE_854299 Chr1 38486727 38486726 - ORSgTEMT00100865 348 0.0007 (1/1536) 0 * * Os_TE_854285 Chr1 38476089 38476090 - COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_854284 Os_TE_854284 Chr1 38476085 38476084 + COPI2_LTR 4733 0.0003 (1/2989) 0 * Os_TE_854285 Os_TE_854208 Chr1 38439316 38439317 + RETRO2A_LTR 12895 0.0003 (1/2994) 0 * Os_TE_854207 Os_TE_854207 Chr1 38439312 38439311 - RETRO1_LTR 8314 0.0003 (1/2995) 0 * Os_TE_854208 Os_TE_854201 Chr1 38434634 38434633 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * * Os_TE_854200 Chr1 38434527 38434528 + F770 284 0.0054 (16/2981) 0 * * Os_TE_854170 Chr1 38427047 38427048 + SZLTR 1249 0.0035 (10/2826) 0 * Os_TE_854169 Os_TE_854169 Chr1 38427043 38427042 - RETRO2_LTR 12874 0.0035 (10/2890) 0 * Os_TE_854170 Os_TE_854165 Chr1 38426093 38426092 + MPING 430 0.0003 (1/2973) 0 * * Os_TE_854144 Chr1 38416296 38416295 + ORSiCMCM00100015 9077 0.0007 (1/1464) 0 * * Os_TE_854124 Chr1 38404349 38404350 + ORSgTERTOOT00009 12852 0.0043 (13/2994) 0 * Os_TE_854123 Os_TE_854123 Chr1 38404345 38404344 - RETRO2_LTR 12874 0.0043 (13/2995) 0 * Os_TE_854124 Os_TE_854119 Chr1 38404094 38404095 - MPING 430 0.0003 (1/2985) 0 * Os_TE_854118 Os_TE_854118 Chr1 38404092 38404091 + MPING 430 0.0003 (1/2983) 0 * Os_TE_854119 Os_TE_854117 Chr1 38403722 38403723 + HARB-1_OS 5166 0.0007 (2/2980) 0 * Os_TE_854116 Os_TE_854116 Chr1 38403720 38403719 - HARB-1_OS 5166 0.0007 (2/2980) 0 * Os_TE_854117 Os_TE_854107 Chr1 38402048 38402049 + ORSgTEMT01601591 242 0.0029 (8/2802) 0 * * Os_TE_854106 Chr1 38400687 38400686 + STOWAWAY44_OS 240 0.0043 (13/2996) 0 * * Os_TE_854104 Chr1 38400284 38400067 - ORSgTEMT02400246 177 0.3289 (983/2989) 1 Intact Os_TE_854103 Os_TE_854103 Chr1 38400063 38400281 - TYPEM 227 0.3258 (971/2980) 1 Intact Os_TE_854104 Os_TE_854086 Chr1 38396394 38396393 + ORSgTEMT01601122 212 0.0134 (40/2976) 0 * Os_TE_854085 Os_TE_854085 Chr1 38396393 38396394 - STOWAWAY21_OS 243 0.0144 (43/2987) 0 * Os_TE_854086 Os_TE_854080 Chr1 38394848 38394849 + ORSgTEMT00500476 150 0.0110 (33/2988) 0 * * Os_TE_854070 Chr1 38393000 38392999 + ORSgTETNOOT02432 215 0.0141 (42/2981) 0 * * Os_TE_854061 Chr1 38384494 38384493 + STOWAWAY51_OS 246 0.0003 (1/2995) 0 * Os_TE_854060 Os_TE_854060 Chr1 38384488 38384489 - STOWAWAY51_OS 246 0.0003 (1/2998) 0 * Os_TE_854061 Os_TE_854052 Chr1 38379353 38379115 + ORSgTEMT01602181 239 0.3179 (919/2891) 1 Intact Os_TE_854051 Os_TE_854051 Chr1 38379115 38379353 - ORSgTEMT01601432 239 0.3293 (969/2943) 1 Intact Os_TE_854052 Os_TE_853995 Chr1 38362422 38362421 + STOWAWAY51_OS 246 0.0013 (4/2987) 0 * Os_TE_853994 Os_TE_853994 Chr1 38362413 38362414 + ORSgTEMT01601591 242 0.0017 (5/2989) 0 * Os_TE_853995 Os_TE_853904 Chr1 38314631 38314630 - STOWAWAY51_OS 246 0.0104 (31/2968) 0 * Os_TE_853903 Os_TE_853903 Chr1 38314628 38314629 + ORSgTEMT01601591 242 0.0105 (31/2966) 0 * Os_TE_853904 Os_TE_853895 Chr1 38312597 38312598 + ORSiTERTOOT00226 792 0.0003 (1/2960) 0 * Os_TE_853894 Os_TE_853894 Chr1 38312593 38312592 - SZ-22_LTR 4403 0.0003 (1/2949) 0 * Os_TE_853895 Os_TE_853874 Chr1 38303475 38303476 - RETROSAT2LTR 12796 0.2027 (608/2999) 0 * Os_TE_853873 Os_TE_853873 Chr1 38303473 38303472 + RETROSAT2LTR 12796 0.1982 (594/2997) 0 * Os_TE_853874 Os_TE_853835 Chr1 38285740 38285741 + ORSgTETNOOT00908 242 0.0104 (31/2987) 0 * * Os_TE_853834 Chr1 38281249 38281248 - STOWAWAY51_OS 246 0.0343 (35/1020) 0 * Os_TE_853833 Os_TE_853833 Chr1 38281243 38281244 + STOWAWAY51_OS 246 0.0117 (35/2994) 0 * Os_TE_853834 Os_TE_853832 Chr1 38281206 38281205 + STOWAWAY51_OS 246 0.0003 (1/2983) 0 * Os_TE_853831 Os_TE_853831 Chr1 38281200 38281201 - STOWAWAY51_OS 246 0.0003 (1/2990) 0 * Os_TE_853832 Os_TE_853809 Chr1 38257793 38257794 + MuDR3_OS 8604 0.0017 (5/2975) 0 * Os_TE_853808 Os_TE_853808 Chr1 38257786 38257785 - MuDR3_OS 8604 0.0017 (5/2980) 0 * Os_TE_853809 Os_TE_853744 Chr1 38235216 38235217 + ORSiTERTOOT00097 759 0.0003 (1/2980) 0 * Os_TE_853743 Os_TE_853743 Chr1 38235212 38235211 - SZ-22_LTR 4403 0.0003 (1/2980) 0 * Os_TE_853744 Os_TE_853733 Chr1 38224440 38224441 + TWIF 586 0.0003 (1/2981) 0 * Os_TE_853732 Os_TE_853732 Chr1 38224433 38224432 - ORSiTETNOOT00134 607 0.0003 (1/2983) 0 * Os_TE_853733 Os_TE_853705 Chr1 38208052 38208053 + MPING 430 0.0087 (26/2995) 0 * Os_TE_853704 Os_TE_853704 Chr1 38208050 38208049 - MPING 430 0.0083 (25/2995) 0 * Os_TE_853705 Os_TE_853698 Chr1 38203508 38203509 - MUDRN3_OS 903 0.0020 (6/2998) 0 * * Os_TE_853697 Chr1 38203292 38203291 + ORSgTEMT00901844 250 0.0017 (5/2997) 0 * Os_TE_853696 Os_TE_853696 Chr1 38203288 38203289 - ORSgTEMT00900099 250 0.0017 (5/2993) 0 * Os_TE_853697 Os_TE_853688 Chr1 38195544 38195545 - SZ-9LTR 965 0.0021 (6/2899) 0 * Os_TE_853687 Os_TE_853687 Chr1 38195540 38195539 + SZ-9LTR 965 0.0021 (6/2860) 0 * Os_TE_853688 Os_TE_853678 Chr1 38193056 38193057 - RIREX_LTR 8828 0.0003 (1/2993) 0 * * Os_TE_853674 Chr1 38192133 38192134 - RETROSAT2LTR 12796 0.3354 (215/641) -1 * Os_TE_853673 Os_TE_853673 Chr1 38192131 38192130 + RETROSAT2LTR 12796 0.0668 (25/374) -1 * Os_TE_853674 Os_TE_853668 Chr1 38190165 38190164 + STOWAWAY51_OS 246 0.0003 (1/2998) 0 * Os_TE_853667 Os_TE_853667 Chr1 38190159 38190160 + ORSgTEMT01601591 242 0.0003 (1/2996) 0 * Os_TE_853668 Os_TE_853657 Chr1 38185072 38185073 + INDITTO 263 0.0060 (18/2988) 0 * Os_TE_853656 Os_TE_853656 Chr1 38185070 38185069 - INDITTO 263 0.0057 (17/2961) 0 * Os_TE_853657 Os_TE_853651 Chr1 38181107 38181108 + SZ-9LTR 965 0.0040 (12/2995) 0 * Os_TE_853650 Os_TE_853650 Chr1 38181103 38181102 - SZ-9LTR 965 0.0040 (12/2998) 0 * Os_TE_853651 Os_TE_853646 Chr1 38179844 38179845 + ORSgTETNOOT01834 251 0.0023 (7/2993) 0 * Os_TE_853645 Os_TE_853645 Chr1 38179842 38179841 + ORSgTETNOOT01834 251 0.0023 (7/2995) 0 * Os_TE_853646 Os_TE_853643 Chr1 38179466 38179467 + ORSgTETNOOT02316 263 0.6687 (1998/2988) 0 * Os_TE_853642 Os_TE_853642 Chr1 38179464 38179463 - INDITTO 263 0.6707 (2002/2985) 0 * Os_TE_853643 Os_TE_853640 Chr1 38177365 38177364 - ORSgTEMT00502544 146 0.0013 (4/2999) 0 * Os_TE_853639 Os_TE_853639 Chr1 38177364 38177365 - ORSgTEMT00500110 151 0.0017 (5/2998) 0 * Os_TE_853640 Os_TE_853624 Chr1 38166240 38166241 - NDNA1TNA_OS 334 0.0037 (11/2947) 0 * Os_TE_853623 Os_TE_853623 Chr1 38166238 38166237 + NDNA1TNA_OS 334 0.0041 (12/2947) 0 * Os_TE_853624 Os_TE_853606 Chr1 38162383 38162384 + SC-8_LTR 4951 0.0233 (70/2998) 0 * Os_TE_853605 Os_TE_853605 Chr1 38162379 38162378 - SC-8_LTR 4951 0.0230 (69/2996) 0 * Os_TE_853606 Os_TE_853596 Chr1 38161131 38161130 + TYPEU4 402 0.0017 (5/2943) 0 * * Os_TE_853587 Chr1 38153714 38153715 + ORSgTETNOOT00908 242 0.0018 (5/2792) 0 * * Os_TE_853585 Chr1 38152960 38152961 + ORSgTEMT01601591 242 0.0003 (1/2980) 0 * * Os_TE_853577 Chr1 38148793 38148794 + COPI2_LTR 4733 0.0003 (1/2986) 0 * Os_TE_853576 Os_TE_853576 Chr1 38148789 38148788 - COPI2_LTR 4733 0.0003 (1/2991) 0 * Os_TE_853577 Os_TE_853570 Chr1 38146661 38146662 - INDITTO 263 0.0644 (192/2983) 0 * Os_TE_853569 Os_TE_853569 Chr1 38146659 38146658 + INDITTO 263 0.0654 (195/2981) 0 * Os_TE_853570 Os_TE_853568 Chr1 38146174 38146175 + ORSgTEMT06100010 269 0.0060 (18/2989) 0 * Os_TE_853567 Os_TE_853567 Chr1 38146172 38146171 + ORSgTEMT06100023 259 0.0060 (18/2987) 0 * Os_TE_853568 Os_TE_853529 Chr1 38129717 38129716 + RIREX_LTR 8828 0.0004 (1/2753) 0 * * Os_TE_853486 Chr1 38104302 38104303 - ORSgTETNOOT02417 265 0.0010 (3/2995) 0 * Os_TE_853485 Os_TE_853485 Chr1 38104300 38104299 - INDITTO 263 0.0010 (3/2995) 0 * Os_TE_853486 Os_TE_853483 Chr1 38104087 38104088 + INDITTO 263 0.4694 (1405/2993) 0 * Os_TE_853482 Os_TE_853482 Chr1 38104085 38104084 - INDITTO 263 0.4690 (1401/2987) 0 * Os_TE_853483 Os_TE_853480 Chr1 38103471 38103470 + STOWAWAY51_OS 246 0.0003 (1/2999) 0 * Os_TE_853479 Os_TE_853479 Chr1 38103465 38103466 - STOWAWAY51_OS 246 0.0003 (1/2999) 0 * Os_TE_853480 Os_TE_853462 Chr1 38092038 38092037 - MPING 430 0.0317 (95/2994) 0 * * Os_TE_853454 Chr1 38089835 38089836 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_853453 Os_TE_853453 Chr1 38089831 38089830 + COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_853454 Os_TE_853443 Chr1 38080182 38080183 - SZ-22_LTR 4403 0.0003 (1/2977) 0 * Os_TE_853442 Os_TE_853442 Chr1 38080178 38080177 + ORSiTERTOOT00226 792 0.0003 (1/2978) 0 * Os_TE_853443 Os_TE_853423 Chr1 38076729 38076730 - SETARIA1 1293 0.0007 (2/2934) 0 * * Os_TE_853403 Chr1 38061187 38061188 + RETROSAT3_LTR 11537 0.0050 (15/2973) 0 * * Os_TE_853396 Chr1 38058299 38057936 + ORSgTEMT00600240 364 0.3205 (921/2874) 1 Intact * Os_TE_853388 Chr1 38044966 38044965 - STOWAWAY44_OS 240 0.0127 (38/2994) 0 * Os_TE_853387 Os_TE_853387 Chr1 38044963 38044964 + STOWAWAY44_OS 240 0.0130 (39/2996) 0 * Os_TE_853388 Os_TE_853379 Chr1 38043977 38043978 + RIREX_LTR 8828 0.0287 (86/2996) 0 * Os_TE_853378 Os_TE_853378 Chr1 38043973 38043972 - RIREX_LTR 8828 0.0277 (83/2994) 0 * Os_TE_853379 Os_TE_853359 Chr1 38041179 38041180 + RETROSAT4_LTR 13504 0.6189 (1598/2582) 0 * Os_TE_853358 Os_TE_853358 Chr1 38041175 38041174 - SZ-35LTR 3853 0.6520 (1812/2779) 0 * Os_TE_853359 Os_TE_853356 Chr1 38038783 38038784 + STOWAWAY51_OS 246 0.0214 (64/2984) 0 * * Os_TE_853344 Chr1 38026257 38026256 - SC-8_LTR 4951 0.0003 (1/2992) 0 * * Os_TE_853339 Chr1 38018442 38018533 - ZM13-2_OS 108 0.8419 (1070/1271) 1 Intact * Os_TE_853324 Chr1 38007094 38007095 - FOCUS 257 0.0003 (1/2994) 0 * * Os_TE_853323 Chr1 38006970 38006971 + NDNA1TNA_OS 334 0.0679 (203/2989) 0 * Os_TE_853322 Os_TE_853322 Chr1 38006968 38006967 - NDNA1TNA_OS 334 0.0689 (206/2992) 0 * Os_TE_853323 Os_TE_853319 Chr1 38004076 38004077 + ORSgTETNOOT01834 251 0.0003 (1/2975) 0 * Os_TE_853318 Os_TE_853318 Chr1 38004074 38004073 - ORSgTETNOOT02470 248 0.0003 (1/2973) 0 * Os_TE_853319 Os_TE_853300 Chr1 37988106 37988107 - SC-8_LTR 4951 0.0003 (1/2961) 0 * * Os_TE_853282 Chr1 37981617 37981618 - ORSgTETNOOT00754 253 0.6741 (1990/2952) 0 * Os_TE_853281 Os_TE_853281 Chr1 37981615 37981614 + ORSgTETNOOT01998 254 0.6656 (1935/2907) 0 * Os_TE_853282 Os_TE_853280 Chr1 37981609 37981610 + ORSgTETNOOT01531 255 0.6760 (2005/2966) 0 * * Os_TE_853276 Chr1 37979858 37979496 - ORSgTEMT00600085 364 0.3298 (977/2962) 1 Intact Os_TE_853274 Os_TE_853274 Chr1 37979495 37979857 + CASTAWAY 364 0.3337 (994/2979) 1 Intact Os_TE_853276 Os_TE_853265 Chr1 37975667 37975668 + COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_853264 Os_TE_853264 Chr1 37975663 37975662 - COPIA2-LTR_OS 6433 0.0007 (2/2996) 0 * Os_TE_853265 Os_TE_853263 Chr1 37975305 37975304 + ORSgTETNOOT00012 241 0.0003 (1/2995) 0 * * Os_TE_853262 Chr1 37975289 37975290 - SC-7_LTR 4431 0.0003 (1/2998) 0 * Os_TE_853261 Os_TE_853261 Chr1 37975285 37975284 + SC-7_LTR 4431 0.0003 (1/2998) 0 * Os_TE_853262 Os_TE_853247 Chr1 37971456 37971455 - STOWAWAY51_OS 246 0.0003 (1/2956) 0 * Os_TE_853246 Os_TE_853246 Chr1 37971450 37971451 + STOWAWAY51_OS 246 0.0003 (1/2952) 0 * Os_TE_853247 Os_TE_853231 Chr1 37967239 37967240 + OSTE20 496 0.6007 (1793/2985) 0 * Os_TE_853230 Os_TE_853230 Chr1 37967235 37967234 + OSTE20 496 0.6007 (1786/2973) 0 * Os_TE_853231 Os_TE_853198 Chr1 37948823 37948822 + TWIF 586 0.0003 (1/2865) 0 * * Os_TE_853184 Chr1 37941953 37941952 + STOWAWAY51_OS 246 0.0003 (1/2995) 0 * Os_TE_853183 Os_TE_853183 Chr1 37941947 37941948 - STOWAWAY51_OS 246 0.0003 (1/2996) 0 * Os_TE_853184 Os_TE_853178 Chr1 37941463 37941464 - COPIA2-LTR_OS 6433 0.0010 (3/2954) 0 * Os_TE_853177 Os_TE_853177 Chr1 37941459 37941458 + COPIA2-LTR_OS 6433 0.0007 (2/2935) 0 * Os_TE_853178 Os_TE_853142 Chr1 37932144 37932145 + RIREX_LTR 8828 0.0007 (2/2984) 0 * * Os_TE_853139 Chr1 37930902 37930903 + INDITTO 263 0.0003 (1/2983) 0 * Os_TE_853138 Os_TE_853138 Chr1 37930900 37930899 - INDITTO 263 0.0003 (1/2980) 0 * Os_TE_853139 Os_TE_853131 Chr1 37929735 37929736 + MPING 430 0.0003 (1/2997) 0 * Os_TE_853130 Os_TE_853130 Chr1 37929733 37929732 - MPING 430 0.0003 (1/2996) 0 * Os_TE_853131 Os_TE_853125 Chr1 37927386 37927387 - RIRE2_LTR 11306 0.0003 (1/2967) 0 * Os_TE_853124 Os_TE_853124 Chr1 37927382 37927381 + RIREX_LTR 8828 0.0003 (1/2973) 0 * Os_TE_853125 Os_TE_853111 Chr1 37924069 37923459 + DS-RICE2N 613 0.3316 (993/2995) 1 Intact Os_TE_853110 Os_TE_853110 Chr1 37923459 37924069 - DS-RICE2N 613 0.3323 (994/2991) 1 Intact Os_TE_853111 Os_TE_853108 Chr1 37921964 37921006 + COPIA2-LTR_OS 6433 0.3317 (993/2994) 1 Solo_LTR Os_TE_853106 Os_TE_853106 Chr1 37921006 37921964 - COPIA2-LTR_OS 6433 0.3339 (1001/2998) 1 Solo_LTR Os_TE_853108 Os_TE_853102 Chr1 37920496 37920495 + COPI2_LTR 4733 0.0003 (1/2989) 0 * * Os_TE_853085 Chr1 37911761 37911760 + STOWAWAY13_OS 251 0.0004 (1/2746) 0 * * Os_TE_853074 Chr1 37909420 37909421 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * * Os_TE_853061 Chr1 37901910 37901911 - SC-3_LTR 5748 0.0003 (1/2981) 0 * * Os_TE_853044 Chr1 37886136 37886137 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_853043 Os_TE_853043 Chr1 37886132 37886131 - COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_853044 Os_TE_852991 Chr1 37856389 37856390 - SC-8_LTR 4951 0.0010 (3/2994) 0 * Os_TE_852990 Os_TE_852990 Chr1 37856385 37856384 + SC-8_LTR 4951 0.0010 (3/2996) 0 * Os_TE_852991 Os_TE_852936 Chr1 37820697 37820698 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_852935 Os_TE_852935 Chr1 37820693 37820692 + COPIA2-LTR_OS 6433 0.0004 (1/2846) 0 * Os_TE_852936 Os_TE_852890 Chr1 37803770 37803771 - INDITTO 263 0.2025 (598/2953) 0 * Os_TE_852889 Os_TE_852889 Chr1 37803768 37803767 + INDITTO 263 0.2041 (604/2960) 0 * Os_TE_852890 Os_TE_852884 Chr1 37802800 37802801 + TYPEU4 402 0.0017 (5/2994) 0 * * Os_TE_852875 Chr1 37795809 37795810 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_852874 Os_TE_852874 Chr1 37795805 37795804 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_852875 Os_TE_852870 Chr1 37793650 37793651 + COPI2_LTR 4733 0.0707 (212/2999) 0 * Os_TE_852869 Os_TE_852869 Chr1 37793646 37793645 - COPI2_LTR 4733 0.0710 (213/2999) 0 * Os_TE_852870 Os_TE_852866 Chr1 37790324 37790323 + STOWAWAY51_OS 246 0.0004 (1/2739) 0 * Os_TE_852865 Os_TE_852865 Chr1 37790318 37790319 + ORSgTEMT01601591 242 0.0004 (1/2754) 0 * Os_TE_852866 Os_TE_852855 Chr1 37787838 37787837 + STOWAWAY51_OS 246 0.0003 (1/2954) 0 * Os_TE_852854 Os_TE_852854 Chr1 37787832 37787833 - STOWAWAY51_OS 246 0.0003 (1/2948) 0 * Os_TE_852855 Os_TE_852849 Chr1 37786683 37786684 + OSTE33 1012 0.3670 (1049/2858) 0 * Os_TE_852848 Os_TE_852848 Chr1 37786674 37786673 + OSTE33 1012 0.4066 (1201/2954) 0 * Os_TE_852849 Os_TE_852838 Chr1 37785340 37785341 - ORSiTETNOOT00134 607 0.0003 (1/2961) 0 * Os_TE_852837 Os_TE_852837 Chr1 37785333 37785332 + TWIF 586 0.0004 (1/2815) 0 * Os_TE_852838 Os_TE_852825 Chr1 37775533 37775532 + ORSgTEMT00900363 260 0.0094 (28/2981) 0 * Os_TE_852824 Os_TE_852824 Chr1 37775516 37775517 - ORSgTEMT00901723 248 0.0100 (30/2990) 0 * Os_TE_852825 Os_TE_852820 Chr1 37774389 37774388 - COPI2_LTR 4733 0.0003 (1/2917) 0 * * Os_TE_852813 Chr1 37772364 37772365 + OSTE18 129 0.0017 (5/2991) 0 * * Os_TE_852804 Chr1 37768539 37768540 + SC-8_LTR 4951 0.0003 (1/2975) 0 * * Os_TE_852797 Chr1 37766993 37766992 - ORSgTERT00201385 8846 0.0027 (8/2979) 0 * * Os_TE_852796 Chr1 37762562 37762561 - HARB-1_OS 5166 0.0108 (32/2970) 0 * * Os_TE_852754 Chr1 37752160 37752159 - COPIA2-LTR_OS 6433 0.0017 (5/2965) 0 * * Os_TE_852725 Chr1 37734444 37734445 - ORSiTERTOOT00367 5639 0.0003 (1/2992) 0 * Os_TE_852724 Os_TE_852724 Chr1 37734440 37734439 + ORSiTERTOOT00367 5639 0.0003 (1/2990) 0 * Os_TE_852725 Os_TE_852714 Chr1 37727169 37727170 + AMYLTP 383 0.6450 (1788/2772) 0 * Os_TE_852713 Os_TE_852713 Chr1 37727160 37727159 - AMYLTP 383 0.6594 (1907/2892) 0 * Os_TE_852714 Os_TE_852671 Chr1 37701190 37701191 - RIREX_LTR 8828 0.0003 (1/2994) 0 * * Os_TE_852650 Chr1 37685565 37685564 - FOCUS 257 0.0003 (1/2954) 0 * * Os_TE_852642 Chr1 37682160 37682161 + TWIF 586 0.0003 (1/2977) 0 * Os_TE_852641 Os_TE_852641 Chr1 37682153 37682152 - ORSiTETNOOT00134 607 0.0003 (1/2978) 0 * Os_TE_852642 Os_TE_852632 Chr1 37676116 37676117 + SC-8_LTR 4951 0.0003 (1/2963) 0 * Os_TE_852631 Os_TE_852631 Chr1 37676112 37676111 - SC-8_LTR 4951 0.0003 (1/2969) 0 * Os_TE_852632 Os_TE_852598 Chr1 37661254 37661255 - JINHUA 479 0.0025 (7/2793) 0 * * Os_TE_852564 Chr1 37643041 37643040 - MPING 430 0.0024 (7/2976) 0 * * Os_TE_852543 Chr1 37637918 37637919 - ORSiTEMT01300001 950 0.0003 (1/2988) 0 * * Os_TE_852536 Chr1 37624994 37624995 - INDITTO 263 0.4642 (1386/2986) 0 * Os_TE_852535 Os_TE_852535 Chr1 37624992 37624991 + INDITTO 263 0.4658 (1390/2984) 0 * Os_TE_852536 Os_TE_852530 Chr1 37622412 37622195 - ORSgTEMT02400246 177 0.3365 (1004/2984) 1 Intact * Os_TE_852529 Chr1 37622401 37622400 + ORSiTERTOOT00101 3870 0.0010 (1/1016) 0 * * Os_TE_852527 Chr1 37622191 37622409 - TYPEM 227 0.3339 (995/2980) 1 Intact * Os_TE_852505 Chr1 37614560 37614561 - ORSgTERT00201216 11284 0.5199 (1517/2918) 0 * Os_TE_852504 Os_TE_852504 Chr1 37614556 37614555 - RIRE2_LTR 11306 0.5305 (1576/2971) 0 * Os_TE_852505 Os_TE_852499 Chr1 37613319 37613320 - RIREX_LTR 8828 0.0007 (2/2894) 0 * Os_TE_852498 Os_TE_852498 Chr1 37613315 37613314 + RIREX_LTR 8828 0.0007 (2/2889) 0 * Os_TE_852499 Os_TE_852494 Chr1 37612076 37610713 - OSTE33 1012 0.3347 (1002/2994) 1 Intact Os_TE_852492 Os_TE_852492 Chr1 37610713 37612076 + OSTE33 1012 0.3259 (966/2964) 1 Intact Os_TE_852494 Os_TE_852485 Chr1 37608552 37608551 + ORSgTEMT01601591 242 0.0003 (1/2985) 0 * * Os_TE_852483 Chr1 37608038 37608039 - INDITTO 263 0.0010 (3/2981) 0 * Os_TE_852482 Os_TE_852482 Chr1 37608036 37608035 + INDITTO 263 0.0010 (3/2982) 0 * Os_TE_852483 Os_TE_852451 Chr1 37602320 37602319 + STOWAWAY51_OS 246 0.0003 (1/2982) 0 * Os_TE_852450 Os_TE_852450 Chr1 37602314 37602315 - STOWAWAY51_OS 246 0.0003 (1/2980) 0 * Os_TE_852451 Os_TE_852449 Chr1 37601200 37599996 - RETRO2_LTR 12874 0.3363 (999/2971) 1 Solo_LTR Os_TE_852447 Os_TE_852447 Chr1 37599996 37601200 + SZLTR 1249 0.3354 (997/2973) 1 Intact Os_TE_852449 Os_TE_852434 Chr1 37598643 37598401 + ORSiTEMT01000008 242 0.3350 (1001/2988) 1 Intact Os_TE_852430 Os_TE_852430 Chr1 37598402 37598627 - ORSgTETNOOT02565 240 0.3366 (1006/2989) 1 Intact Os_TE_852434 Os_TE_852411 Chr1 37596596 37596595 - HARB-1_OS 5166 0.0007 (2/2990) 0 * * Os_TE_852357 Chr1 37562498 37562499 - RETROSAT2LTR 12796 0.0037 (11/2997) 0 * * Os_TE_852355 Chr1 37561206 37561207 + NDNA1TNA_OS 334 0.1806 (539/2985) 0 * Os_TE_852354 Os_TE_852354 Chr1 37561204 37561203 - NDNA1TNA_OS 334 0.1784 (532/2982) 0 * Os_TE_852355 Os_TE_852352 Chr1 37560721 37560720 + RETROSAT4_LTR 13504 0.0017 (5/2987) 0 * * Os_TE_852347 Chr1 37559822 37559823 + OLO24 345 0.0003 (1/2926) 0 * * Os_TE_852330 Chr1 37549754 37549755 - RETRO2_LTR 12874 0.0657 (195/2969) 0 * Os_TE_852329 Os_TE_852329 Chr1 37549750 37549749 + RETRO2_LTR 12874 0.0652 (194/2976) 0 * Os_TE_852330 Os_TE_852320 Chr1 37542851 37542852 + MPING 430 0.2027 (596/2941) 0 * * Os_TE_852317 Chr1 37540764 37540765 + ORSgTEMT00501279 126 0.0006 (1/1741) 0 * * Os_TE_852294 Chr1 37524804 37524803 + ORSgTETNOOT01219 231 0.3373 (1009/2991) 0.91 * * Os_TE_852248 Chr1 37484498 37484499 + RIREX_LTR 8828 0.0003 (1/2997) 0 * Os_TE_852247 Os_TE_852247 Chr1 37484494 37484493 - RIREX_LTR 8828 0.0003 (1/2996) 0 * Os_TE_852248 Os_TE_852229 Chr1 37475584 37475585 + RETROSAT4_LTR 13504 0.0466 (139/2985) 0 * Os_TE_852228 Os_TE_852228 Chr1 37475580 37475579 - SZ-35LTR 3853 0.0488 (146/2992) 0 * Os_TE_852229 Os_TE_852217 Chr1 37470398 37470399 + SEVERIN-2 1952 0.0013 (4/2994) 0 * * Os_TE_852216 Chr1 37470108 37470109 + MPING 430 0.0003 (1/2996) 0 * Os_TE_852215 Os_TE_852215 Chr1 37470106 37470105 - MPING 430 0.0003 (1/2996) 0 * Os_TE_852216 Os_TE_852210 Chr1 37466698 37466699 + DITTO-2 235 0.0017 (5/2992) 0 * Os_TE_852209 Os_TE_852209 Chr1 37466696 37466695 - DITTO-2 235 0.0017 (5/2993) 0 * Os_TE_852210 Os_TE_852175 Chr1 37448158 37448159 - HATOS1 3488 0.1985 (581/2927) 0 * * Os_TE_852143 Chr1 37426846 37426847 + MPING 430 0.0013 (4/2997) 0 * * Os_TE_852123 Chr1 37415536 37415535 + MPING 430 0.0003 (1/2971) 0 * * Os_TE_852099 Chr1 37401213 37401214 + RETROSAT4_LTR 13504 0.0007 (2/2969) 0 * Os_TE_852098 Os_TE_852098 Chr1 37401209 37401208 - SZ-35LTR 3853 0.0017 (5/2968) 0 * Os_TE_852099 Os_TE_852080 Chr1 37396204 37396205 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * * Os_TE_852077 Chr1 37395152 37395153 - STOWAWAY51_OS 246 0.0018 (5/2797) 0 * * Os_TE_852060 Chr1 37391404 37391405 - RIREX_LTR 8828 0.0423 (125/2954) 0 * * Os_TE_852056 Chr1 37390628 37390629 - TELIA 141 0.0003 (1/2974) 0 * Os_TE_852055 Os_TE_852055 Chr1 37390620 37390619 + TELIA 141 0.0007 (2/2976) 0 * Os_TE_852056 Os_TE_852049 Chr1 37382533 37382534 + OSTE33 1012 0.6676 (1982/2969) 0 * Os_TE_852048 Os_TE_852048 Chr1 37382525 37382524 + OSTE33 1012 0.6676 (1980/2966) 0 * Os_TE_852049 Os_TE_852033 Chr1 37379011 37379012 + F770 284 0.0003 (1/2992) 0 * Os_TE_852032 Os_TE_852032 Chr1 37379009 37379008 - F770 284 0.0003 (1/2990) 0 * Os_TE_852033 Os_TE_851976 Chr1 37352774 37352775 - MUDRN3_OS 903 0.0015 (4/2671) 0 * Os_TE_851975 Os_TE_851975 Chr1 37352766 37352765 - MUDRN3_OS 903 0.0019 (5/2669) 0 * Os_TE_851976 Os_TE_851940 Chr1 37341031 37341032 + COPIA2-LTR_OS 6433 0.0003 (1/2956) 0 * Os_TE_851939 Os_TE_851939 Chr1 37341027 37341026 - COPIA2-LTR_OS 6433 0.0003 (1/2954) 0 * Os_TE_851940 Os_TE_851927 Chr1 37333903 37333904 - MPING 430 0.0003 (1/2992) 0 * * Os_TE_851906 Chr1 37328750 37328751 + ORSgTETNOOT01219 231 0.6667 (1978/2967) 0 * Os_TE_851905 Os_TE_851905 Chr1 37328744 37328743 + ORSgTETNOOT00908 242 0.6733 (2016/2994) 0 * Os_TE_851906 Os_TE_851886 Chr1 37320904 37320903 + TWIFB1 3737 0.0003 (1/2993) 0 * * Os_TE_851866 Chr1 37308405 37308404 - STOWAWAY51_OS 246 0.0003 (1/2999) 0 * Os_TE_851865 Os_TE_851865 Chr1 37308402 37308403 - STOWAWAY51_OS 246 0.0003 (1/2998) 0 * Os_TE_851866 Os_TE_851859 Chr1 37302383 37302382 + ORSiTERTOOT00226 792 0.0003 (1/2998) 0 * * Os_TE_851858 Chr1 37301587 37301588 + ORSgTETNOOT00908 242 0.0003 (1/2996) 0 * * Os_TE_851828 Chr1 37273038 37273039 - MPING 430 0.0010 (3/2994) 0 * Os_TE_851827 Os_TE_851827 Chr1 37273036 37273035 + MPING 430 0.0010 (3/2995) 0 * Os_TE_851828 Os_TE_851826 Chr1 37272825 37272826 + MPING 430 0.0013 (4/2997) 0 * Os_TE_851825 Os_TE_851825 Chr1 37272823 37272822 - MPING 430 0.0013 (4/2998) 0 * Os_TE_851826 Os_TE_851824 Chr1 37269922 37269921 + STOWAWAY51_OS 246 0.0643 (192/2988) 0 * Os_TE_851823 Os_TE_851823 Chr1 37269916 37269917 + ORSgTEMT01601591 242 0.0630 (188/2985) 0 * Os_TE_851824 Os_TE_851819 Chr1 37268870 37257636 + CACTA-B 1103 0.3365 (1000/2972) 1 Intact Os_TE_851816 Os_TE_851816 Chr1 37257637 37268868 - ORSgTETN00200001 10994 0.2922 (820/2806) 1 Intact Os_TE_851819 Os_TE_851796 Chr1 37255725 37252396 - SZ-40LTR 2465 0.3338 (1000/2996) 1 Intact Os_TE_851795 Os_TE_851795 Chr1 37252396 37255725 + SZ-40LTR 2465 0.3360 (1007/2997) 1 Intact Os_TE_851796 Os_TE_851759 Chr1 37232904 37232905 + AMYLTP 383 0.4309 (1285/2982) 0 * Os_TE_851758 Os_TE_851758 Chr1 37232897 37232896 - AMYLTP 383 0.4295 (1282/2985) 0 * Os_TE_851759 Os_TE_851707 Chr1 37190020 37190019 + STOWAWAY51_OS 246 0.0003 (1/2979) 0 * Os_TE_851706 Os_TE_851706 Chr1 37190014 37190015 - STOWAWAY51_OS 246 0.0003 (1/2978) 0 * Os_TE_851707 Os_TE_851688 Chr1 37176201 37176202 + ORSgTETNOOT00908 242 0.0003 (1/2998) 0 * * Os_TE_851666 Chr1 37160783 37160784 + CLOUD-4 520 0.0009 (1/1098) 0 * * Os_TE_851634 Chr1 37141412 37140517 - COPIA2-LTR_OS 6433 0.3359 (1006/2995) 1 Solo_LTR Os_TE_851633 Os_TE_851633 Chr1 37140517 37141412 + COPIA2-LTR_OS 6433 0.3233 (960/2969) 1 Solo_LTR Os_TE_851634 Os_TE_851622 Chr1 37138803 37138804 - ORSgTEMT00600304 361 0.0013 (4/2993) 0 * Os_TE_851621 Os_TE_851621 Chr1 37138800 37138799 - CASTAWAY 364 0.0017 (5/2990) 0 * Os_TE_851622 Os_TE_851608 Chr1 37133188 37133187 + STOWAWAY51_OS 246 0.0003 (1/2995) 0 * * Os_TE_851605 Chr1 37133007 37128132 - Hopscotch_LTR 4876 0.3342 (1002/2998) 1 Intact Os_TE_851602 Os_TE_851602 Chr1 37128132 37133007 + Hopscotch_LTR 4876 0.3331 (999/2999) 1 Intact Os_TE_851605 Os_TE_851589 Chr1 37120357 37120358 + SC-8_LTR 4951 0.0003 (1/2987) 0 * Os_TE_851588 Os_TE_851588 Chr1 37120353 37120352 - SC-8_LTR 4951 0.0003 (1/2988) 0 * Os_TE_851589 Os_TE_851578 Chr1 37113409 37113410 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_851577 Os_TE_851577 Chr1 37113405 37113404 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_851578 Os_TE_851544 Chr1 37103630 37103631 + TELIA 141 0.0003 (1/2908) 0 * Os_TE_851543 Os_TE_851543 Chr1 37103622 37103621 - TELIA 141 0.0003 (1/2911) 0 * Os_TE_851544 Os_TE_851456 Chr1 37058959 37058960 + ID-4 284 0.0003 (1/2959) 0 * Os_TE_851455 Os_TE_851455 Chr1 37058957 37058956 + ORSgTEMT04600010 284 0.0003 (1/2941) 0 * Os_TE_851456 Os_TE_851413 Chr1 37051604 37051603 + ORSgTEMT01400031 216 0.0003 (1/2978) 0 * * Os_TE_851403 Chr1 37048355 37048354 - STOWAWAY8_OS 259 0.0615 (180/2927) 0 * * Os_TE_851375 Chr1 37036566 37036567 - TRUNCATOR2_LTR 2904 0.0011 (3/2789) 0 * * Os_TE_851371 Chr1 37034234 37034233 + TRUNCATOR 2918 0.6776 (2028/2993) 0 * * Os_TE_851349 Chr1 37021164 37020929 + ORSgTEMT01601445 230 0.6612 (1405/2125) 1 Intact * Os_TE_851316 Chr1 37001040 37001041 - INDITTO 263 0.0003 (1/2996) 0 * * Os_TE_851314 Chr1 37000899 37000898 + INDITTO 263 0.0070 (21/2996) 0 * * Os_TE_851313 Chr1 37000456 37000457 - F569 228 0.0020 (6/2998) 0 * Os_TE_851312 Os_TE_851312 Chr1 37000454 37000453 + F569 228 0.0020 (6/2996) 0 * Os_TE_851313 Os_TE_851279 Chr1 36993627 36993628 - SZ-9LTR 965 0.0010 (3/2988) 0 * Os_TE_851278 Os_TE_851278 Chr1 36993623 36993622 - SZ-9LTR 965 0.0007 (2/2976) 0 * Os_TE_851279 Os_TE_851253 Chr1 36988731 36988730 - COPI2_LTR 4733 0.0003 (1/2991) 0 * * Os_TE_851232 Chr1 36974764 36974502 - INDITTO 263 0.3351 (1000/2984) 1 Intact Os_TE_851231 Os_TE_851231 Chr1 36974502 36974760 + INDITTO 263 0.3323 (991/2982) 1 Intact Os_TE_851232 Os_TE_851228 Chr1 36972575 36971714 + MUDRN2_OS 756 0.3319 (992/2989) 1 Intact Os_TE_851227 Os_TE_851227 Chr1 36971714 36972570 - MUDRN1_OS 764 0.3261 (967/2965) 1 Intact Os_TE_851228 Os_TE_851212 Chr1 36969532 36969531 + STOWAWAY51_OS 246 0.0003 (1/2972) 0 * * Os_TE_851211 Chr1 36969526 36969527 - STOWAWAY51_OS 246 0.0003 (1/2960) 0 * Os_TE_851210 Os_TE_851210 Chr1 36969522 36969521 + ORSgTEMT01600726 235 0.0003 (1/2968) 0 * Os_TE_851211 Os_TE_851204 Chr1 36967158 36967157 + COPI2_LTR 4733 0.0003 (1/2996) 0 * * Os_TE_851196 Chr1 36962742 36962743 - SEVERIN-2 1952 0.4536 (1109/2445) 0 * Os_TE_851195 Os_TE_851195 Chr1 36962740 36962739 + SEVERIN-2 1952 0.5474 (1575/2877) 0 * Os_TE_851196 Os_TE_851168 Chr1 36947526 36947527 - COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_851167 Os_TE_851167 Chr1 36947522 36947521 + COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_851168 Os_TE_851156 Chr1 36939790 36939789 - STOWAWAY51_OS 246 0.0130 (39/2995) 0 * Os_TE_851155 Os_TE_851155 Chr1 36939787 36939788 - STOWAWAY51_OS 246 0.0130 (39/2995) 0 * Os_TE_851156 Os_TE_851007 Chr1 36836653 36836654 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_851006 Os_TE_851006 Chr1 36836649 36836648 + COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_851007 Os_TE_851005 Chr1 36829564 36818324 - ORSgTETN00200001 10994 0.3265 (971/2974) 1 Intact Os_TE_850999 Os_TE_850999 Chr1 36818325 36829564 + SPMLIKE 10989 0.3319 (994/2995) 1 Intact Os_TE_851005 Os_TE_850997 Chr1 36817354 36817355 + INDITTO 263 0.0007 (2/2995) 0 * Os_TE_850996 Os_TE_850996 Chr1 36817352 36817351 - INDITTO 263 0.0007 (2/2989) 0 * Os_TE_850997 Os_TE_850985 Chr1 36806810 36806809 + SEVERIN-2 1952 0.0004 (1/2853) 0 * * Os_TE_850937 Chr1 36792020 36792021 + MERMITEB 1610 0.0004 (1/2751) 0 * * Os_TE_850851 Chr1 36768066 36768067 - CENTRE 280 0.0003 (1/2985) 0 * Os_TE_850850 Os_TE_850850 Chr1 36768064 36768063 + CENTRE 280 0.0003 (1/2990) 0 * Os_TE_850851 Os_TE_850830 Chr1 36763405 36763406 + RETRO2_LTR 12874 0.0007 (2/2993) 0 * * Os_TE_850816 Chr1 36755900 36755901 - TELIA 141 0.0003 (1/2995) 0 * Os_TE_850815 Os_TE_850815 Chr1 36755892 36755891 + TELIA 141 0.0003 (1/2994) 0 * Os_TE_850816 Os_TE_850814 Chr1 36755380 36755379 - ORSgTEMT00101341 314 0.0017 (5/2999) 0 * Os_TE_850813 Os_TE_850813 Chr1 36755377 36755378 - OSTE18 129 0.0017 (5/2999) 0 * Os_TE_850814 Os_TE_850764 Chr1 36726060 36726059 + STOWAWAY51_OS 246 0.0003 (1/2980) 0 * Os_TE_850763 Os_TE_850763 Chr1 36726054 36726055 - STOWAWAY51_OS 246 0.0003 (1/2978) 0 * Os_TE_850764 Os_TE_850704 Chr1 36699718 36699717 - STOWAWAY51_OS 246 0.0010 (3/2999) 0 * Os_TE_850703 Os_TE_850703 Chr1 36699712 36699713 + STOWAWAY51_OS 246 0.0010 (3/2997) 0 * Os_TE_850704 Os_TE_850685 Chr1 36691533 36691534 - ORSgTEMT02400179 221 0.1057 (312/2951) 0 * * Os_TE_850623 Chr1 36666336 36666337 - COPI2_LTR 4733 0.0003 (1/2967) 0 * Os_TE_850622 Os_TE_850622 Chr1 36666332 36666331 + COPI2_LTR 4733 0.0003 (1/2966) 0 * Os_TE_850623 Os_TE_850602 Chr1 36659062 36659061 + COPI2_LTR 4733 0.0003 (1/2991) 0 * * Os_TE_850597 Chr1 36654693 36654694 - CASTAWAY 364 0.0003 (1/2995) 0 * Os_TE_850596 Os_TE_850596 Chr1 36654690 36654689 - ORSgTEMT00600304 361 0.0003 (1/2991) 0 * Os_TE_850597 Os_TE_850570 Chr1 36639353 36639354 + MuDR3_OS 8604 0.6442 (1780/2763) 0 * Os_TE_850569 Os_TE_850569 Chr1 36639345 36639344 - MuDR3_OS 8604 0.6678 (1950/2920) 0 * Os_TE_850570 Os_TE_850558 Chr1 36634207 36634206 + STOWAWAY51_OS 246 0.0003 (1/2999) 0 * Os_TE_850557 Os_TE_850557 Chr1 36634201 36634202 - STOWAWAY51_OS 246 0.0003 (1/2997) 0 * Os_TE_850558 Os_TE_850550 Chr1 36632133 36632132 - COPIA2-LTR_OS 6433 0.0018 (5/2773) 0 * * Os_TE_850534 Chr1 36624867 36624866 + ORSgTETNOOT02578 258 0.0011 (3/2773) 0 * * Os_TE_850524 Chr1 36618768 36618769 - RIREX_LTR 8828 0.0007 (2/2991) 0 * Os_TE_850523 Os_TE_850523 Chr1 36618764 36618763 + RIREX_LTR 8828 0.0007 (2/2994) 0 * Os_TE_850524 Os_TE_850511 Chr1 36616293 36616294 + SEVERIN-2 1952 0.6202 (1839/2965) 0 * * Os_TE_850499 Chr1 36614941 36609926 - MuDR4_OS 7610 0.3236 (952/2942) 1 Intact Os_TE_850498 Os_TE_850498 Chr1 36609926 36614941 + MuDR4_OS 7610 0.3324 (992/2984) 1 Intact Os_TE_850499 Os_TE_850477 Chr1 36597548 36597549 + COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_850476 Os_TE_850476 Chr1 36597544 36597543 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_850477 Os_TE_850473 Chr1 36596796 36596797 - SC-8_LTR 4951 0.0003 (1/2977) 0 * Os_TE_850472 Os_TE_850472 Chr1 36596792 36596791 + SC-8_LTR 4951 0.0003 (1/2973) 0 * Os_TE_850473 Os_TE_850397 Chr1 36557258 36545268 - TRUNCATOR 2918 0.3175 (933/2939) 1 Intact Os_TE_850384 Os_TE_850384 Chr1 36545268 36557253 + TRUNCATOR 2918 0.3365 (1006/2990) 1 Intact Os_TE_850397 Os_TE_850379 Chr1 36539805 36539804 + MPING 430 0.0003 (1/2973) 0 * * Os_TE_850370 Chr1 36538829 36538830 - ORSiTERTOOT00074 4935 0.0003 (1/2958) 0 * Os_TE_850369 Os_TE_850369 Chr1 36538825 36538824 + ORSiTERTOOT00074 4935 0.0003 (1/2971) 0 * Os_TE_850370 Os_TE_850367 Chr1 36536675 36536676 - F770 284 0.1217 (364/2990) 0 * Os_TE_850366 Os_TE_850366 Chr1 36536673 36536672 + F770 284 0.1206 (360/2984) 0 * Os_TE_850367 Os_TE_850361 Chr1 36534882 36534881 - COPIA2-LTR_OS 6433 0.0003 (1/2986) 0 * * Os_TE_850348 Chr1 36529243 36529244 - COPI2_LTR 4733 0.0003 (1/2978) 0 * Os_TE_850347 Os_TE_850347 Chr1 36529239 36529238 + COPI2_LTR 4733 0.0003 (1/2982) 0 * Os_TE_850348 Os_TE_850338 Chr1 36526035 36526036 - MPING 430 0.0013 (4/2988) 0 * Os_TE_850337 Os_TE_850337 Chr1 36526033 36526032 + MPING 430 0.0013 (4/2989) 0 * Os_TE_850338 Os_TE_850322 Chr1 36523921 36523920 - RETRO1_LTR 8314 0.0352 (102/2899) 0 * * Os_TE_850300 Chr1 36509084 36509085 + INDITTO 263 0.0003 (1/2909) 0 * Os_TE_850299 Os_TE_850299 Chr1 36509082 36509081 - INDITTO 263 0.0003 (1/2911) 0 * Os_TE_850300 Os_TE_850289 Chr1 36501605 36501604 - STOWAWAY51_OS 246 0.0003 (1/2971) 0 * * Os_TE_850279 Chr1 36500455 36500456 - MPING 430 0.0013 (4/2997) 0 * Os_TE_850278 Os_TE_850278 Chr1 36500453 36500452 + MPING 430 0.0013 (4/2996) 0 * Os_TE_850279 Os_TE_850262 Chr1 36495808 36495809 - RETROSAT4_LTR 13504 0.1223 (366/2993) 0 * Os_TE_850261 Os_TE_850261 Chr1 36495798 36495797 + RETROSAT4_LTR 13504 0.0008 (2/2658) 0 * Os_TE_850262 Os_TE_850189 Chr1 36471850 36471849 - TRUNCATOR 2918 0.0485 (53/1093) 0 * Os_TE_850188 Os_TE_850188 Chr1 36471849 36471850 + TRUNCATOR 2918 0.6668 (1967/2950) 0 * Os_TE_850189 Os_TE_850170 Chr1 36464655 36464654 + ENSPM4_OS 11610 0.1723 (501/2907) 0 * * Os_TE_850164 Chr1 36463880 36463881 + TELIA 141 0.0003 (1/2893) 0 * * Os_TE_850149 Chr1 36461702 36461703 + INDITTO 263 0.0084 (25/2992) 0 * Os_TE_850148 Os_TE_850148 Chr1 36461700 36461699 - INDITTO 263 0.0084 (25/2994) 0 * Os_TE_850149 Os_TE_850136 Chr1 36457885 36457886 + SINE03_OS 360 0.0007 (2/2896) 0 * * Os_TE_850124 Chr1 36456092 36456093 - MPING 430 0.0014 (4/2949) 0 * Os_TE_850123 Os_TE_850123 Chr1 36456090 36456089 + MPING 430 0.0013 (4/2970) 0 * Os_TE_850124 Os_TE_850122 Chr1 36455814 36455815 + OSTE33 1012 0.1347 (401/2977) 0 * Os_TE_850121 Os_TE_850121 Chr1 36455805 36455804 + OSTE33 1012 0.1427 (427/2992) 0 * Os_TE_850122 Os_TE_850083 Chr1 36445428 36445429 - STOWAWAY51_OS 246 0.0003 (1/2996) 0 * * Os_TE_850078 Chr1 36443692 36443693 - MPING 430 0.0003 (1/2994) 0 * * Os_TE_850076 Chr1 36443483 36443484 - STOWAWAY51_OS 246 0.0007 (2/2994) 0 * * Os_TE_850075 Chr1 36443309 36443310 - TELIA 141 0.0007 (2/2961) 0 * Os_TE_850074 Os_TE_850074 Chr1 36443302 36443301 + TELIA 141 0.0007 (2/2983) 0 * Os_TE_850075 Os_TE_850071 Chr1 36439111 36439112 - RETROSAT3_LTR 11537 0.0003 (1/2983) 0 * * Os_TE_850053 Chr1 36430274 36430275 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_850052 Os_TE_850052 Chr1 36430270 36430269 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_850053 Os_TE_850048 Chr1 36428082 36428083 - MPING 430 0.0003 (1/2995) 0 * Os_TE_850047 Os_TE_850047 Chr1 36428080 36428079 + MPING 430 0.0003 (1/2988) 0 * Os_TE_850048 Os_TE_850002 Chr1 36405168 36405169 - ORSiTERTOOT00367 5639 0.0157 (47/2990) 0 * Os_TE_850001 Os_TE_850001 Chr1 36405164 36405163 + ORSiTERTOOT00367 5639 0.0160 (48/2994) 0 * Os_TE_850002 Os_TE_849982 Chr1 36391691 36391692 + MPING 430 0.0007 (2/2994) 0 * Os_TE_849981 Os_TE_849981 Chr1 36391689 36391688 - MPING 430 0.0007 (2/2996) 0 * Os_TE_849982 Os_TE_849949 Chr1 36377006 36377007 - TYPEM 227 0.0003 (1/2994) 0 * Os_TE_849948 Os_TE_849948 Chr1 36377005 36377004 - ORSgTEMT02400179 221 0.0003 (1/2990) 0 * Os_TE_849949 Os_TE_849925 Chr1 36366399 36366400 + RIREX_LTR 8828 0.0443 (132/2980) 0 * Os_TE_849924 Os_TE_849924 Chr1 36366395 36366394 - RIREX_LTR 8828 0.0450 (134/2979) 0 * Os_TE_849925 Os_TE_849921 Chr1 36361574 36361575 + COPI2_LTR 4733 0.0007 (2/2995) 0 * Os_TE_849920 Os_TE_849920 Chr1 36361570 36361569 - COPI2_LTR 4733 0.0007 (2/2994) 0 * Os_TE_849921 Os_TE_849914 Chr1 36357696 36357697 - SC-8_LTR 4951 0.0040 (12/2993) 0 * Os_TE_849913 Os_TE_849913 Chr1 36357692 36357691 + SC-8_LTR 4951 0.0040 (12/2994) 0 * Os_TE_849914 Os_TE_849911 Chr1 36356272 36356273 + SC-8_LTR 4951 0.0007 (2/2999) 0 * * Os_TE_849908 Chr1 36355406 36355405 + ORSiTERTOOT00074 4935 0.0050 (15/2981) 0 * * Os_TE_849883 Chr1 36349458 36349457 - RETRO1_LTR 8314 0.0154 (46/2980) 0 * * Os_TE_849877 Chr1 36343610 36343609 - ORSiTERTOOT00089 329 0.0005 (1/2075) 0 * * Os_TE_849856 Chr1 36321941 36321940 - ORSgTERT00200916 5990 0.0003 (1/2869) 0 * * Os_TE_849855 Chr1 36321644 36312805 - MuDR3_OS 8604 0.3271 (973/2975) 1 Intact Os_TE_849850 Os_TE_849850 Chr1 36312801 36321644 + MuDR3_OS 8604 0.3248 (966/2974) 1 Intact Os_TE_849855 Os_TE_849837 Chr1 36307023 36307024 + OLO24 345 0.0003 (1/2952) 0 * Os_TE_849836 Os_TE_849836 Chr1 36307021 36307020 - OLO24 345 0.0003 (1/2955) 0 * Os_TE_849837 Os_TE_849819 Chr1 36303324 36303325 + STOWAWAY43_OS 233 0.0007 (2/2748) 0 * * Os_TE_849808 Chr1 36299236 36299237 - ORSgTEMT06100010 269 0.6748 (1967/2915) 0 * Os_TE_849807 Os_TE_849807 Chr1 36299234 36299233 + ORSgTEMT06100010 269 0.6854 (2039/2975) 0 * Os_TE_849808 Os_TE_849802 Chr1 36298706 36298707 - ORSgTEMT00900965 216 0.0003 (1/2864) 0 * * Os_TE_849764 Chr1 36289865 36289866 - RETROSAT4_LTR 13504 0.0013 (4/2982) 0 * * Os_TE_849762 Chr1 36288027 36288026 + MERMITEB 1610 0.0003 (1/2903) 0 * * Os_TE_849731 Chr1 36267658 36267659 - MPING 430 0.0007 (2/2998) 0 * Os_TE_849730 Os_TE_849730 Chr1 36267656 36267655 + MPING 430 0.0007 (2/2999) 0 * Os_TE_849731 Os_TE_849729 Chr1 36267464 36267463 + ORSgTEMT01601591 242 0.0003 (1/2985) 0 * * Os_TE_849728 Chr1 36267312 36267313 + COPI2_LTR 4733 0.0003 (1/2993) 0 * * Os_TE_849723 Chr1 36265951 36265952 - INDITTO 263 0.0003 (1/2978) 0 * Os_TE_849722 Os_TE_849722 Chr1 36265949 36265948 + INDITTO 263 0.0003 (1/2969) 0 * Os_TE_849723 Os_TE_849721 Chr1 36265731 36264736 - DS-RICE4N 715 0.3234 (956/2956) 1 Intact * Os_TE_849700 Chr1 36255541 36255542 - COPI2_LTR 4733 0.0013 (4/2986) 0 * Os_TE_849699 Os_TE_849699 Chr1 36255537 36255536 + COPI2_LTR 4733 0.0010 (3/2981) 0 * Os_TE_849700 Os_TE_849693 Chr1 36253621 36253622 + ORSgTETNOOT00908 242 0.0006 (1/1683) 0 * * Os_TE_849691 Chr1 36251488 36251489 + COPI2_LTR 4733 0.0003 (1/2993) 0 * Os_TE_849690 Os_TE_849690 Chr1 36251484 36251483 - COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_849691 Os_TE_849666 Chr1 36241598 36241597 - STOWAWAY51_OS 246 0.0003 (1/2975) 0 * Os_TE_849665 Os_TE_849665 Chr1 36241592 36241593 + STOWAWAY51_OS 246 0.0007 (2/2971) 0 * Os_TE_849666 Os_TE_849650 Chr1 36236376 36236377 - MPING 430 0.0017 (5/2989) 0 * Os_TE_849649 Os_TE_849649 Chr1 36236374 36236373 + MPING 430 0.0013 (4/2985) 0 * Os_TE_849650 Os_TE_849615 Chr1 36219037 36219038 - OSTE33 1012 0.0010 (3/2993) 0 * Os_TE_849614 Os_TE_849614 Chr1 36219029 36219028 - OSTE33 1012 0.0013 (4/2992) 0 * Os_TE_849615 Os_TE_849601 Chr1 36213433 36213434 + ORSgTETNOOT00012 241 0.0011 (3/2845) 0 * * Os_TE_849570 Chr1 36199248 36199249 - ORSgTEMT01702320 154 0.0004 (1/2520) 0 * * Os_TE_849543 Chr1 36194376 36194377 + ORSiTERTOOT00226 792 0.0027 (8/2986) 0 * Os_TE_849542 Os_TE_849542 Chr1 36194372 36194371 - SZ-22_LTR 4403 0.0030 (9/2986) 0 * Os_TE_849543 Os_TE_849534 Chr1 36192405 36192406 - ORSgTEMT02000041 194 0.4664 (1395/2991) 0 * * Os_TE_849521 Chr1 36188623 36188622 - STOWAWAY51_OS 246 0.0003 (1/2987) 0 * * Os_TE_849503 Chr1 36176409 36176410 - SZ-35LTR 3853 0.0157 (47/2991) 0 * Os_TE_849502 Os_TE_849502 Chr1 36176405 36176404 + RETROSAT4_LTR 13504 0.0144 (43/2987) 0 * Os_TE_849503 Os_TE_849486 Chr1 36170797 36170798 + ORSgTEMT01601122 212 0.0003 (1/2966) 0 * * Os_TE_849456 Chr1 36153244 36153245 + ORSgTETNOOT01686 252 0.1568 (469/2991) 0 * * Os_TE_849449 Chr1 36151812 36151813 - NDNA1TNA_OS 334 0.5077 (1520/2994) 0 * Os_TE_849448 Os_TE_849448 Chr1 36151811 36151810 + NDNA1TNA_OS 334 0.5105 (1530/2997) 0 * Os_TE_849449 Os_TE_849438 Chr1 36150075 36150076 + MPING 430 0.0003 (1/2999) 0 * Os_TE_849437 Os_TE_849437 Chr1 36150073 36150072 - MPING 430 0.0003 (1/2999) 0 * Os_TE_849438 Os_TE_849373 Chr1 36116393 36116394 - MuDR4_OS 7610 0.2341 (679/2901) 0 * Os_TE_849372 Os_TE_849372 Chr1 36116386 36116385 - MuDR4_OS 7610 0.2230 (636/2852) 0 * Os_TE_849373 Os_TE_849366 Chr1 36115477 36115476 + ORSgTEMT00101674 340 0.0324 (97/2991) 0 * Os_TE_849365 Os_TE_849365 Chr1 36115476 36115477 + NDNA1TNA_OS 334 0.0328 (98/2988) 0 * Os_TE_849366 Os_TE_849352 Chr1 36104659 36104660 - STOWAWAY51_OS 246 0.0007 (2/2984) 0 * * Os_TE_849310 Chr1 36084648 36084647 - INDITTO 263 0.0210 (52/2480) 0 * * Os_TE_849236 Chr1 36057394 36057393 + SZ-55_LTR 10318 0.0003 (1/2991) 0 * * Os_TE_849231 Chr1 36055099 36055100 - MPING 430 0.0020 (6/2982) 0 * Os_TE_849230 Os_TE_849230 Chr1 36055097 36055096 + MPING 430 0.0020 (6/2986) 0 * Os_TE_849231 Os_TE_849226 Chr1 36052700 36052701 - TRUNCATOR 2918 0.1512 (451/2983) 0 * * Os_TE_849216 Chr1 36049046 36049047 - COPIA2-LTR_OS 6433 0.0003 (1/2976) 0 * * Os_TE_849215 Chr1 36048604 36048605 + CACTA-M 1129 0.0231 (69/2981) 0 * * Os_TE_849207 Chr1 36046552 36046553 - MPING 430 0.0003 (1/2959) 0 * Os_TE_849206 Os_TE_849206 Chr1 36046550 36046549 + MPING 430 0.0003 (1/2956) 0 * Os_TE_849207 Os_TE_849205 Chr1 36044780 36044781 - ORSgTEMT04200023 393 0.0003 (1/2999) 0 * * Os_TE_849201 Chr1 36037409 36038628 + SZLTR 1249 0.3107 (914/2942) 1 Intact * Os_TE_849130 Chr1 36013152 36013153 - ORSgTEMT00600304 361 0.6983 (2088/2990) 0 * Os_TE_849129 Os_TE_849129 Chr1 36013149 36013148 - CASTAWAY 364 0.6964 (2076/2981) 0 * Os_TE_849130 Os_TE_849103 Chr1 35998477 35998478 - COPIA2-LTR_OS 6433 0.0003 (1/2971) 0 * Os_TE_849102 Os_TE_849102 Chr1 35998473 35998472 + COPIA2-LTR_OS 6433 0.0003 (1/2964) 0 * Os_TE_849103 Os_TE_849072 Chr1 35987640 35987641 + ORSgTETNOOT01834 251 0.0007 (2/2976) 0 * * Os_TE_849029 Chr1 35960036 35960035 - RIRE3_LTR 12054 0.0003 (1/2987) 0 * * Os_TE_849025 Chr1 35957811 35958157 + NDNA2TNA_OS 346 0.3419 (1022/2989) 1 Intact * Os_TE_849015 Chr1 35954435 35954436 - RIRE2_LTR 11306 0.0003 (1/2992) 0 * Os_TE_849014 Os_TE_849014 Chr1 35954431 35954430 + RIRE2_LTR 11306 0.0003 (1/2992) 0 * Os_TE_849015 Os_TE_848960 Chr1 35914818 35914819 - RETROSAT2LTR 12796 0.1026 (293/2857) 0 * * Os_TE_848951 Chr1 35913390 35913389 + SEVERIN-2 1952 0.5324 (1119/2102) 0 * * Os_TE_848950 Chr1 35912616 35912617 + MPING 430 0.0090 (27/2998) 0 * Os_TE_848949 Os_TE_848949 Chr1 35912614 35912613 - MPING 430 0.0093 (28/2997) 0 * Os_TE_848950 Os_TE_848923 Chr1 35893860 35893861 + COPIA2-LTR_OS 6433 0.0010 (3/2994) 0 * Os_TE_848922 Os_TE_848922 Chr1 35893856 35893855 - COPIA2-LTR_OS 6433 0.0010 (3/2992) 0 * Os_TE_848923 Os_TE_848921 Chr1 35893310 35893311 - COPIA2-LTR_OS 6433 0.0003 (1/2982) 0 * Os_TE_848920 Os_TE_848920 Chr1 35893306 35893305 + COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * Os_TE_848921 Os_TE_848916 Chr1 35889506 35889507 - STOWAWAY51_OS 246 0.0003 (1/2994) 0 * * Os_TE_848911 Chr1 35884354 35884355 + INDITTO 263 0.0050 (15/2979) 0 * Os_TE_848910 Os_TE_848910 Chr1 35884352 35884351 - INDITTO 263 0.0050 (15/2987) 0 * Os_TE_848911 Os_TE_848890 Chr1 35874058 35874059 + ORSgTETNOOT01834 251 0.0175 (51/2919) 0 * Os_TE_848889 Os_TE_848889 Chr1 35874056 35874055 + ORSgTETNOOT01834 251 0.0179 (52/2910) 0 * Os_TE_848890 Os_TE_848881 Chr1 35869982 35869983 - ORSiTETNOOT00134 607 0.0003 (1/2995) 0 * Os_TE_848880 Os_TE_848880 Chr1 35869975 35869974 + TWIF 586 0.0003 (1/2995) 0 * Os_TE_848881 Os_TE_848867 Chr1 35868031 35868032 - RETRO2_LTR 12874 0.6779 (2027/2990) 0 * Os_TE_848866 Os_TE_848866 Chr1 35868027 35868026 + RETRO2_LTR 12874 0.6796 (2034/2993) 0 * Os_TE_848867 Os_TE_848860 Chr1 35864788 35864787 - STOWAWAY51_OS 246 0.0007 (2/2989) 0 * * Os_TE_848823 Chr1 35850552 35850553 + ORSiTERTOOT00381 4988 0.0267 (80/2991) 0 * Os_TE_848822 Os_TE_848822 Chr1 35850548 35850547 - SC-8_LTR 4951 0.0264 (79/2991) 0 * Os_TE_848823 Os_TE_848819 Chr1 35848203 35848204 + SC-8_LTR 4951 0.0003 (1/2996) 0 * * Os_TE_848771 Chr1 35827145 35827146 - ORSiTETNOOT00134 607 0.0003 (1/2995) 0 * Os_TE_848770 Os_TE_848770 Chr1 35827138 35827137 + TWIF 586 0.0003 (1/2995) 0 * Os_TE_848771 Os_TE_848765 Chr1 35823122 35823123 - HARB-1_OS 5166 0.0003 (1/2991) 0 * Os_TE_848764 Os_TE_848764 Chr1 35823120 35823119 + HARB-1_OS 5166 0.0003 (1/2986) 0 * Os_TE_848765 Os_TE_848761 Chr1 35820896 35820897 + MuDR2_OS 6770 0.5183 (1487/2869) 0 * Os_TE_848760 Os_TE_848760 Chr1 35820888 35820887 - MuDR2_OS 6770 0.5085 (1435/2822) 0 * Os_TE_848761 Os_TE_848733 Chr1 35806493 35806494 + TELIA 141 0.0003 (1/2982) 0 * Os_TE_848732 Os_TE_848732 Chr1 35806485 35806484 - TELIA 141 0.0003 (1/2987) 0 * Os_TE_848733 Os_TE_848714 Chr1 35798377 35798378 + ORSgTEMT00500864 109 0.0003 (1/2999) 0 * * Os_TE_848659 Chr1 35779271 35779270 + RETRO1_LTR 8314 0.0003 (1/2998) 0 * * Os_TE_848625 Chr1 35766795 35766794 + ORSgTERTOOT00009 12852 0.0007 (2/2994) 0 * * Os_TE_848603 Chr1 35753563 35753564 - ORSgTETN00200001 10994 0.3092 (645/2086) 0 * * Os_TE_848601 Chr1 35753279 35753280 - COPI2_LTR 4733 0.5553 (1661/2991) 0 * Os_TE_848600 Os_TE_848600 Chr1 35753277 35753276 + COPI2_LTR 4733 0.5310 (1533/2887) 0 * Os_TE_848601 Os_TE_848592 Chr1 35749485 35749486 - TNR2A 152 0.0010 (3/2974) 0 * * Os_TE_848565 Chr1 35732440 35732441 + TWIF 586 0.0003 (1/2974) 0 * Os_TE_848564 Os_TE_848564 Chr1 35732433 35732432 - ORSiTETNOOT00134 607 0.0003 (1/2978) 0 * Os_TE_848565 Os_TE_848559 Chr1 35726549 35726548 + STOWAWAY51_OS 246 0.0003 (1/2992) 0 * Os_TE_848558 Os_TE_848558 Chr1 35726543 35726544 - STOWAWAY51_OS 246 0.0003 (1/2990) 0 * Os_TE_848559 Os_TE_848543 Chr1 35719577 35719578 - RETRO2A_LTR 12895 0.0313 (93/2967) 0 * Os_TE_848542 Os_TE_848542 Chr1 35719573 35719572 + RETRO1_LTR 8314 0.0296 (88/2970) 0 * Os_TE_848543 Os_TE_848491 Chr1 35693038 35693039 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_848490 Os_TE_848490 Chr1 35693034 35693033 + COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_848491 Os_TE_848459 Chr1 35681593 35681592 + HEARTBLEEDING 326 0.5569 (1663/2986) 0 * Os_TE_848458 Os_TE_848458 Chr1 35681592 35681593 + OSTE18 129 0.5533 (1640/2964) 0 * Os_TE_848459 Os_TE_848446 Chr1 35667865 35667866 - ORSiTETNOOT00199 3501 0.0010 (3/2951) 0 * Os_TE_848445 Os_TE_848445 Chr1 35667858 35667857 + TWIF 586 0.0027 (8/2947) 0 * Os_TE_848446 Os_TE_848424 Chr1 35663931 35663932 - ORSiTETNOOT00134 607 0.0003 (1/2973) 0 * Os_TE_848423 Os_TE_848423 Chr1 35663924 35663923 + TWIF 586 0.0003 (1/2971) 0 * Os_TE_848424 Os_TE_848377 Chr1 35634834 35634835 - Cassandra_OS-LTR 764 0.6864 (2044/2978) 0 * * Os_TE_848361 Chr1 35631063 35631064 - ORSgTETN00200001 10994 0.5500 (1605/2918) 0 * Os_TE_848360 Os_TE_848360 Chr1 35631061 35631060 + CACTA-M 1129 0.5524 (1618/2929) 0 * Os_TE_848361 Os_TE_848354 Chr1 35627036 35627035 + ORSgTEMT01601122 212 0.0010 (3/2998) 0 * * Os_TE_848344 Chr1 35616655 35616654 + STOWAWAY51_OS 246 0.0003 (1/2994) 0 * Os_TE_848343 Os_TE_848343 Chr1 35616649 35616650 + ORSgTEMT01601591 242 0.0003 (1/2992) 0 * Os_TE_848344 Os_TE_848322 Chr1 35610919 35610918 + SZ-43LTR 4039 0.0016 (2/1247) 0 * * Os_TE_848307 Chr1 35607601 35607602 - HARB-1_OS 5166 0.0017 (5/2994) 0 * Os_TE_848306 Os_TE_848306 Chr1 35607599 35607598 + HARB-1_OS 5166 0.0017 (5/2989) 0 * Os_TE_848307 Os_TE_848261 Chr1 35581879 35581878 - ORSgTEMT00700002 381 0.0013 (4/2994) 0 * * Os_TE_848258 Chr1 35581052 35581053 + TRUNCATOR 2918 0.1003 (297/2961) 0 * * Os_TE_848210 Chr1 35560645 35560646 - NDNA1TNA_OS 334 0.0007 (2/2837) 0 * Os_TE_848209 Os_TE_848209 Chr1 35560643 35560642 + NDNA1TNA_OS 334 0.0007 (2/2817) 0 * Os_TE_848210 Os_TE_848198 Chr1 35555708 35555709 - TYPEU1 380 0.1592 (474/2978) 0 * Os_TE_848197 Os_TE_848197 Chr1 35555702 35555701 + TYPEU2 382 0.1457 (430/2952) 0 * Os_TE_848198 Os_TE_848165 Chr1 35546832 35546833 - OSTE18 129 0.0004 (1/2272) 0 * * Os_TE_848142 Chr1 35537847 35537848 + DS-RICE4N 715 0.0014 (4/2902) 0 * Os_TE_848141 Os_TE_848141 Chr1 35537840 35537839 - DS-RICE2N 613 0.0014 (4/2904) 0 * Os_TE_848142 Os_TE_848119 Chr1 35529491 35529492 + COPI2_LTR 4733 0.5541 (1639/2958) 0 * Os_TE_848118 Os_TE_848118 Chr1 35529487 35529486 - COPI2_LTR 4733 0.5572 (1660/2979) 0 * Os_TE_848119 Os_TE_848115 Chr1 35527768 35527769 - MDR2 6967 0.5612 (1677/2988) 0 * Os_TE_848114 Os_TE_848114 Chr1 35527759 35527758 + MDR2 6967 0.5562 (1654/2974) 0 * Os_TE_848115 Os_TE_848071 Chr1 35498523 35498522 + COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * * Os_TE_848066 Chr1 35495149 35495148 + COPI2_LTR 4733 0.0007 (2/2999) 0 * * Os_TE_848040 Chr1 35485710 35485709 - Hopscotch_LTR 4876 0.6797 (2037/2997) 0 * Os_TE_848039 Os_TE_848039 Chr1 35485707 35485708 + Hopscotch_LTR 4876 0.6801 (2039/2998) 0 * Os_TE_848040 Os_TE_848036 Chr1 35485272 35485273 + MPING 430 0.0003 (1/2973) 0 * * Os_TE_848026 Chr1 35479704 35479705 - ORSiTERT00100062 5674 0.0013 (4/2992) 0 * Os_TE_848025 Os_TE_848025 Chr1 35479700 35479699 + OSTONOR1_LTR 6440 0.0013 (4/2994) 0 * Os_TE_848026 Os_TE_848022 Chr1 35476034 35476033 + STOWAWAY51_OS 246 0.0003 (1/2967) 0 * * Os_TE_848012 Chr1 35468903 35468902 - ORSiTERTOOT00301 9654 0.0087 (16/1836) -1 * * Os_TE_848010 Chr1 35468655 35468656 + MPING 430 0.0003 (1/2968) 0 * Os_TE_848009 Os_TE_848009 Chr1 35468653 35468652 - MPING 430 0.0003 (1/2973) 0 * Os_TE_848010 Os_TE_848001 Chr1 35465715 35467403 + ENSPM4_OS 11610 0.2114 (632/2990) 1 Intact * Os_TE_847998 Chr1 35464892 35464893 - MPING 430 0.0003 (1/2963) 0 * Os_TE_847997 Os_TE_847997 Chr1 35464890 35464889 + MPING 430 0.0003 (1/2964) 0 * Os_TE_847998 Os_TE_847961 Chr1 35443198 35456620 + RETROSAT4_LTR 13504 0.2049 (608/2968) 1 Intact * Os_TE_847955 Chr1 35440722 35440723 - SC-3_LTR 5748 0.0010 (3/2990) 0 * Os_TE_847954 Os_TE_847954 Chr1 35440718 35440717 + ORSiTERTOOT00296 5553 0.0010 (3/2989) 0 * Os_TE_847955 Os_TE_847941 Chr1 35429411 35429412 + HELITRON8_OS 8831 0.1231 (364/2956) 0 * * Os_TE_847906 Chr1 35417830 35417831 + RIREX_LTR 8828 0.0003 (1/2992) 0 * Os_TE_847905 Os_TE_847905 Chr1 35417826 35417825 - RIREX_LTR 8828 0.0003 (1/2992) 0 * Os_TE_847906 Os_TE_847904 Chr1 35417816 35417815 - STOWAWAY51_OS 246 0.0003 (1/2994) 0 * * Os_TE_847899 Chr1 35409007 35409008 - MuDR2_OS 6770 0.0013 (4/2991) 0 * Os_TE_847898 Os_TE_847898 Chr1 35408998 35408997 + MuDR2_OS 6770 0.0013 (4/2991) 0 * Os_TE_847899 Os_TE_847888 Chr1 35405401 35405402 - F770 284 0.0023 (7/2990) 0 * * Os_TE_847872 Chr1 35390056 35390057 - SC-8_LTR 4951 0.0007 (2/2994) 0 * Os_TE_847871 Os_TE_847871 Chr1 35390052 35390051 + SC-8_LTR 4951 0.0003 (1/2995) 0 * Os_TE_847872 Os_TE_847832 Chr1 35381910 35381909 + ORSgTEMT05000092 279 0.0017 (5/2974) 0 * * Os_TE_847810 Chr1 35347159 35347160 + COPIA2-LTR_OS 6433 0.0007 (2/2990) 0 * Os_TE_847809 Os_TE_847809 Chr1 35347155 35347154 - COPIA2-LTR_OS 6433 0.0007 (2/2986) 0 * Os_TE_847810 Os_TE_847732 Chr1 35322550 35322551 + COPI2_LTR 4733 0.0003 (1/2980) 0 * Os_TE_847731 Os_TE_847731 Chr1 35322546 35322545 - COPI2_LTR 4733 0.0003 (1/2987) 0 * Os_TE_847732 Os_TE_847729 Chr1 35320546 35320547 + ORSgTEMT05000092 279 0.0017 (5/2988) 0 * Os_TE_847728 Os_TE_847728 Chr1 35320544 35320543 - SUSU 279 0.0013 (4/2989) 0 * Os_TE_847729 Os_TE_847718 Chr1 35319026 35319027 + MPING 430 0.0030 (8/2658) 0 * Os_TE_847717 Os_TE_847717 Chr1 35319024 35319023 - MPING 430 0.0034 (9/2637) 0 * Os_TE_847718 Os_TE_847707 Chr1 35306738 35306739 - DS-RICE2N 613 0.6781 (2029/2992) 0 * Os_TE_847706 Os_TE_847706 Chr1 35306731 35306730 + DS-RICE2N 613 0.6789 (2030/2990) 0 * Os_TE_847707 Os_TE_847700 Chr1 35302782 35302783 + ORSgTEMT00600272 361 0.0003 (1/2997) 0 * Os_TE_847699 Os_TE_847699 Chr1 35302777 35302776 + ORSgTEMT00600376 329 0.0003 (1/2998) 0 * Os_TE_847700 Os_TE_847695 Chr1 35302357 35302358 + OLO24 345 0.0017 (5/2999) 0 * Os_TE_847694 Os_TE_847694 Chr1 35302355 35302354 - OLO24 345 0.0017 (5/2997) 0 * Os_TE_847695 Os_TE_847664 Chr1 35296465 35271524 - RETRO1_LTR 8314 0.2571 (740/2878) 1 Intact * Os_TE_847640 Chr1 35266184 35266185 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_847639 Os_TE_847639 Chr1 35266180 35266179 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_847640 Os_TE_847616 Chr1 35256208 35256209 - SZ-48LTR 3632 0.1965 (585/2977) 0 * Os_TE_847615 Os_TE_847615 Chr1 35256204 35256203 + SZ-48LTR 3632 0.2012 (603/2997) 0 * Os_TE_847616 Os_TE_847598 Chr1 35242798 35243306 - CLOUD-7 495 0.8097 (2404/2969) 0.83 Intact * Os_TE_847556 Chr1 35224455 35224454 + TWIFB1 3737 0.0003 (1/2992) 0 * * Os_TE_847537 Chr1 35220914 35220915 + RETROSAT4_LTR 13504 0.0003 (1/2980) 0 * * Os_TE_847502 Chr1 35201106 35201107 + RIREX_LTR 8828 0.0017 (5/2996) 0 * Os_TE_847501 Os_TE_847501 Chr1 35201102 35201101 - RIREX_LTR 8828 0.0017 (5/2997) 0 * Os_TE_847502 Os_TE_847499 Chr1 35200680 35200681 + MPING 430 0.1206 (360/2986) 0 * Os_TE_847498 Os_TE_847498 Chr1 35200678 35200677 - MPING 430 0.1207 (360/2983) 0 * Os_TE_847499 Os_TE_847490 Chr1 35198522 35198521 + DS-RICE3N 525 0.2139 (633/2959) 0 * * Os_TE_847489 Chr1 35198352 35198351 - OSTE18 129 0.2167 (645/2976) 0 * * Os_TE_847445 Chr1 35188863 35188522 - NDNA2TNA_OS 346 0.1837 (548/2983) 1 Intact Os_TE_847443 Os_TE_847443 Chr1 35188518 35188863 + NDNA2TNA_OS 346 0.1860 (556/2990) 1 Intact Os_TE_847445 Os_TE_847442 Chr1 35188413 35188414 - STOWAWAY51_OS 246 0.0003 (1/2988) 0 * * Os_TE_847439 Chr1 35187770 35187769 - COPI2_LTR 4733 0.0003 (1/2897) 0 * * Os_TE_847436 Chr1 35185112 35185111 + ORSgTEMT01601591 242 0.0054 (16/2990) 0 * Os_TE_847435 Os_TE_847435 Chr1 35185106 35185107 + STOWAWAY51_OS 246 0.0057 (17/2991) 0 * Os_TE_847436 Os_TE_847428 Chr1 35182464 35182463 + ORSgTEMT01700505 154 0.0003 (1/2890) 0 * * Os_TE_847419 Chr1 35173651 35173650 - STOWAWAY51_OS 246 0.0003 (1/2998) 0 * * Os_TE_847388 Chr1 35165190 35165191 - SZ-35LTR 3853 0.6652 (1901/2858) 0 * Os_TE_847387 Os_TE_847387 Chr1 35165186 35165185 + RETROSAT4_LTR 13504 0.6577 (1852/2816) 0 * Os_TE_847388 Os_TE_847362 Chr1 35149735 35149736 - SZ-22_LTR 4403 0.0007 (2/2938) 0 * * Os_TE_847360 Chr1 35149706 35149707 + COPI2_LTR 4733 0.0007 (2/2934) 0 * Os_TE_847359 Os_TE_847359 Chr1 35149702 35149701 - COPI2_LTR 4733 0.0007 (2/2915) 0 * Os_TE_847360 Os_TE_847351 Chr1 35147870 35147869 + COPI2_LTR 4733 0.0003 (1/2989) 0 * * Os_TE_847342 Chr1 35143903 35143902 + STOWAWAY51_OS 246 0.0003 (1/2997) 0 * Os_TE_847341 Os_TE_847341 Chr1 35143897 35143898 - STOWAWAY51_OS 246 0.0003 (1/2992) 0 * Os_TE_847342 Os_TE_847339 Chr1 35143663 35143664 - TYPEU1 380 0.1560 (467/2993) 0 * Os_TE_847338 Os_TE_847338 Chr1 35143656 35143655 + TYPEU4 402 0.1560 (467/2993) 0 * Os_TE_847339 Os_TE_847337 Chr1 35142916 35142917 + GYPSY-A_LTR 8951 0.0003 (1/2994) 0 * Os_TE_847336 Os_TE_847336 Chr1 35142912 35142911 - GYPSY-A_LTR 8951 0.0003 (1/2990) 0 * Os_TE_847337 Os_TE_847314 Chr1 35133939 35133940 + ORSiTERTOOT00074 4935 0.0044 (13/2978) 0 * Os_TE_847313 Os_TE_847313 Chr1 35133935 35133934 - ORSiTERTOOT00074 4935 0.0040 (12/2977) 0 * Os_TE_847314 Os_TE_847308 Chr1 35132710 35132711 + MPING 430 0.0003 (1/2996) 0 * Os_TE_847307 Os_TE_847307 Chr1 35132708 35132707 - MPING 430 0.0007 (2/2997) 0 * Os_TE_847308 Os_TE_847303 Chr1 35129384 35129385 + TELIA 141 0.0003 (1/2957) 0 * Os_TE_847302 Os_TE_847302 Chr1 35129376 35129375 + TELIA 141 0.0003 (1/2956) 0 * Os_TE_847303 Os_TE_847298 Chr1 35127957 35127956 + STOWAWAY51_OS 246 0.1243 (372/2993) 0 * Os_TE_847297 Os_TE_847297 Chr1 35127951 35127952 - STOWAWAY51_OS 246 0.1260 (377/2992) 0 * Os_TE_847298 Os_TE_847293 Chr1 35125402 35125403 - OSTE20 496 0.0070 (21/2985) 0 * Os_TE_847292 Os_TE_847292 Chr1 35125398 35125397 + OSTE20 496 0.0074 (22/2993) 0 * Os_TE_847293 Os_TE_847287 Chr1 35123927 35123928 - INDITTO 263 0.0003 (1/2995) 0 * Os_TE_847286 Os_TE_847286 Chr1 35123925 35123924 + INDITTO 263 0.0003 (1/2995) 0 * Os_TE_847287 Os_TE_847284 Chr1 35123711 35123712 + MPING 430 0.0003 (1/2977) 0 * Os_TE_847283 Os_TE_847283 Chr1 35123709 35123708 - MPING 430 0.0003 (1/2975) 0 * Os_TE_847284 Os_TE_847278 Chr1 35120856 35120857 + AMYLTP 383 0.0007 (2/2962) 0 * Os_TE_847277 Os_TE_847277 Chr1 35120848 35120847 - AMYLTP 383 0.0007 (2/2963) 0 * Os_TE_847278 Os_TE_847267 Chr1 35118822 35115445 + SZ-40LTR 2465 0.3281 (982/2993) 1 Intact Os_TE_847266 Os_TE_847266 Chr1 35115445 35118822 - GYPSY-A_LTR 8951 0.3271 (979/2993) 1 Solo_LTR Os_TE_847267 Os_TE_847264 Chr1 35115319 35115318 - COPI2_LTR 4733 0.0003 (1/2999) 0 * * Os_TE_847258 Chr1 35110648 35110649 - COPIA2-LTR_OS 6433 0.0003 (1/2964) 0 * Os_TE_847257 Os_TE_847257 Chr1 35110644 35110643 + COPIA2-LTR_OS 6433 0.0003 (1/2953) 0 * Os_TE_847258 Os_TE_847251 Chr1 35108368 35108367 - STOWAWAY44_OS 240 0.0007 (2/2921) 0 * * Os_TE_847246 Chr1 35106821 35106822 + MUDR_N7_OS 1283 0.2729 (280/1026) 0 * Os_TE_847245 Os_TE_847245 Chr1 35106813 35106812 - MUDR_N7_OS 1283 0.0977 (250/2560) 0 * Os_TE_847246 Os_TE_847244 Chr1 35106801 35106802 - RIRE5-LTR_OS 6427 0.6777 (2029/2994) 0 * Os_TE_847243 Os_TE_847243 Chr1 35106795 35106794 + RIRE5-LTR_OS 6427 0.6344 (1652/2604) 0 * Os_TE_847244 Os_TE_847239 Chr1 35106358 35106357 + RETRO2A_LTR 12895 0.0070 (21/2989) 0 * * Os_TE_847234 Chr1 35103960 35103959 - TRUNCATOR 2918 0.0038 (11/2901) 0 * Os_TE_847233 Os_TE_847233 Chr1 35103959 35103960 + TRUNCATOR 2918 0.0052 (15/2904) 0 * Os_TE_847234 Os_TE_847230 Chr1 35103611 35103612 - SZ-35LTR 3853 0.0045 (13/2921) 0 * Os_TE_847229 Os_TE_847229 Chr1 35103607 35103606 + RETROSAT4_LTR 13504 0.0045 (13/2917) 0 * Os_TE_847230 Os_TE_847216 Chr1 35100729 35100728 + OSTE20 496 0.0910 (265/2911) 0 * * Os_TE_847210 Chr1 35095469 35095468 + ORSgTEMT02400116 209 0.5553 (1663/2995) 0 * Os_TE_847209 Os_TE_847209 Chr1 35095462 35095463 - ORSgTEMT02400092 225 0.5553 (1663/2995) 0 * Os_TE_847210 Os_TE_847156 Chr1 35086254 35086253 + STOWAWAY51_OS 246 0.0674 (199/2954) 0 * Os_TE_847155 Os_TE_847155 Chr1 35086248 35086249 + ORSgTEMT01601591 242 0.0741 (220/2969) 0 * Os_TE_847156 Os_TE_847136 Chr1 35079918 35079917 + OSTONOR1_LTR 6440 0.0007 (2/2983) 0 * * Os_TE_847084 Chr1 35061823 35061824 + TREP215 239 0.0004 (1/2827) 0 * * Os_TE_847063 Chr1 35058046 35058045 + STOWAWAY44_OS 240 0.0003 (1/2984) 0 * * Os_TE_847060 Chr1 35057124 35057123 - ENSPM4_OS 11610 0.0044 (13/2956) 0 * Os_TE_847059 Os_TE_847059 Chr1 35057123 35057124 + ENSPM4_OS 11610 0.0044 (13/2971) 0 * Os_TE_847060 Os_TE_847022 Chr1 35030833 35030832 + MPING 430 0.0003 (1/2982) 0 * * Os_TE_847006 Chr1 35028795 35028796 - RETROSAT2LTR 12796 0.6353 (1883/2964) 0 * Os_TE_847005 Os_TE_847005 Chr1 35028793 35028792 + RETROSAT2LTR 12796 0.5780 (1511/2614) 0 * Os_TE_847006 Os_TE_846997 Chr1 35027884 35027885 + RIREX_LTR 8828 0.0027 (8/2987) 0 * Os_TE_846996 Os_TE_846996 Chr1 35027880 35027879 - RIREX_LTR 8828 0.0030 (9/2986) 0 * Os_TE_846997 Os_TE_846968 Chr1 35007210 35007211 + HARB-1_OS 5166 0.0017 (5/2944) 0 * Os_TE_846967 Os_TE_846967 Chr1 35007208 35007207 - HARB-1_OS 5166 0.0014 (4/2936) 0 * Os_TE_846968 Os_TE_846962 Chr1 35003967 35003966 - RPO_OS 1983 0.0017 (5/2983) 0 * * Os_TE_846948 Chr1 34996334 34996333 + STOWAWAY15-2_OS 145 0.0038 (10/2626) 0 * * Os_TE_846942 Chr1 34994119 34994120 + RETROSAT4_LTR 13504 0.0003 (1/2979) 0 * Os_TE_846941 Os_TE_846941 Chr1 34994114 34994113 - SZ-35LTR 3853 0.0003 (1/2977) 0 * Os_TE_846942 Os_TE_846936 Chr1 34992133 34992134 - RETRO1_LTR 8314 0.0134 (40/2982) 0 * * Os_TE_846926 Chr1 34989927 34989928 - RIREX_LTR 8828 0.0010 (3/2985) 0 * Os_TE_846925 Os_TE_846925 Chr1 34989923 34989922 + RIREX_LTR 8828 0.0010 (3/2979) 0 * Os_TE_846926 Os_TE_846904 Chr1 34981459 34981460 - SC-3_LTR 5748 0.0047 (14/2997) 0 * Os_TE_846903 Os_TE_846903 Chr1 34981455 34981454 + ORSiTERTOOT00296 5553 0.0047 (14/2995) 0 * Os_TE_846904 Os_TE_846901 Chr1 34980692 34980693 + NDNA1TNA_OS 334 0.0034 (10/2948) 0 * Os_TE_846900 Os_TE_846900 Chr1 34980690 34980689 - NDNA1TNA_OS 334 0.0034 (10/2943) 0 * Os_TE_846901 Os_TE_846897 Chr1 34980387 34980386 - SC-3_LTR 5748 0.0003 (1/2896) 0 * * Os_TE_846894 Chr1 34979982 34979981 - STOWAWAY50_OS 174 0.0003 (1/2979) 0 * * Os_TE_846878 Chr1 34970018 34970019 - COPI2_LTR 4733 0.0003 (1/2997) 0 * * Os_TE_846821 Chr1 34942685 34942684 + ORSgTETNOOT00032 218 0.0027 (8/2976) 0 * * Os_TE_846808 Chr1 34937697 34937698 + TWIFB1 3737 0.0003 (1/2933) 0 * * Os_TE_846770 Chr1 34918020 34918021 + RETRO2_LTR 12874 0.0033 (10/2988) 0 * Os_TE_846769 Os_TE_846769 Chr1 34918016 34918015 - RETRO2_LTR 12874 0.0033 (10/2986) 0 * Os_TE_846770 Os_TE_846768 Chr1 34917944 34917945 - SZ-40LTR 2465 0.0033 (10/2987) 0 * Os_TE_846767 Os_TE_846767 Chr1 34917940 34917939 + GYPSY-A_LTR 8951 0.0033 (10/2986) 0 * Os_TE_846768 Os_TE_846756 Chr1 34915294 34915293 - ORSgTEMT01701281 153 0.0003 (1/2909) 0 * * Os_TE_846739 Chr1 34908091 34908092 - SZ-4_LTR 5991 0.0556 (165/2967) 0 * * Os_TE_846717 Chr1 34900520 34900521 - SC-3_LTR 5748 0.0003 (1/2986) 0 * Os_TE_846716 Os_TE_846716 Chr1 34900516 34900515 + ORSiTERTOOT00296 5553 0.0003 (1/2991) 0 * Os_TE_846717 Os_TE_846713 Chr1 34897491 34897492 - MPING 430 0.0121 (36/2972) 0 * Os_TE_846712 Os_TE_846712 Chr1 34897489 34897488 + MPING 430 0.0118 (35/2972) 0 * Os_TE_846713 Os_TE_846689 Chr1 34894149 34894150 - RIREX_LTR 8828 0.0017 (5/2994) 0 * Os_TE_846688 Os_TE_846688 Chr1 34894145 34894144 + RIREX_LTR 8828 0.0017 (5/2993) 0 * Os_TE_846689 Os_TE_846687 Chr1 34893934 34893935 + F770 284 0.0760 (226/2974) 0 * * Os_TE_846676 Chr1 34885458 34885457 + STOWAWAY51_OS 246 0.0003 (1/2975) 0 * Os_TE_846675 Os_TE_846675 Chr1 34885452 34885453 - STOWAWAY51_OS 246 0.0003 (1/2981) 0 * Os_TE_846676 Os_TE_846671 Chr1 34882153 34882154 + ORSiCMCM00100014 10855 0.0003 (1/2989) 0 * * Os_TE_846669 Chr1 34880440 34880441 - COPIA2-LTR_OS 6433 0.0014 (4/2947) 0 * Os_TE_846668 Os_TE_846668 Chr1 34880436 34880435 + COPIA2-LTR_OS 6433 0.0014 (4/2953) 0 * Os_TE_846669 Os_TE_846640 Chr1 34868396 34868397 + ORSiTERTOOT00333 4719 0.0310 (91/2936) 0 * Os_TE_846639 Os_TE_846639 Chr1 34868393 34868392 - ORSiTERTOOT00333 4719 0.0325 (96/2957) 0 * Os_TE_846640 Os_TE_846618 Chr1 34862463 34862464 + MPING 430 0.0003 (1/2960) 0 * Os_TE_846617 Os_TE_846617 Chr1 34862461 34862460 - MPING 430 0.0003 (1/2960) 0 * Os_TE_846618 Os_TE_846548 Chr1 34840023 34840024 + ORSgTEMT00600124 361 0.1411 (422/2990) 0 * Os_TE_846547 Os_TE_846547 Chr1 34840021 34840020 + CASTAWAY 364 0.1404 (420/2991) 0 * Os_TE_846548 Os_TE_846524 Chr1 34820895 34820896 - RETRO1_LTR 8314 0.0003 (1/2929) 0 * * Os_TE_846486 Chr1 34814891 34814892 + MPING 430 0.0003 (1/2996) 0 * Os_TE_846485 Os_TE_846485 Chr1 34814889 34814888 - MPING 430 0.0003 (1/2996) 0 * Os_TE_846486 Os_TE_846476 Chr1 34812302 34812301 - DS-RICE2N 613 0.0018 (5/2706) 0 * * Os_TE_846475 Chr1 34812299 34812300 - STOWAWAY44_OS 240 0.0004 (1/2738) 0 * * Os_TE_846469 Chr1 34807679 34807680 + SZ-55_LTR 10318 0.0003 (1/2988) 0 * * Os_TE_846465 Chr1 34804276 34804275 + INDITTO 263 0.0640 (192/2998) 0 * * Os_TE_846440 Chr1 34793846 34793847 + INDITTO 263 0.1455 (436/2997) 0 * Os_TE_846439 Os_TE_846439 Chr1 34793844 34793843 - INDITTO 263 0.1458 (437/2998) 0 * Os_TE_846440 Os_TE_846430 Chr1 34792138 34792139 - ORSgTERT00201216 11284 0.0677 (202/2983) 0 * Os_TE_846429 Os_TE_846429 Chr1 34792134 34792133 - RIRE2_LTR 11306 0.0664 (198/2982) 0 * Os_TE_846430 Os_TE_846428 Chr1 34792106 34792107 - RIREX_LTR 8828 0.0003 (1/2974) 0 * * Os_TE_846426 Chr1 34792079 34792078 + F118 179 0.0003 (1/2974) 0 * * Os_TE_846422 Chr1 34788076 34786672 + OSTE33 1012 0.2104 (628/2985) 1 Intact Os_TE_846421 Os_TE_846421 Chr1 34786672 34788076 + OSTE33 1012 0.2144 (641/2990) 1 Intact Os_TE_846422 Os_TE_846411 Chr1 34783894 34783895 - COPIA2-LTR_OS 6433 0.0003 (1/2979) 0 * * Os_TE_846396 Chr1 34782888 34782887 - STOWAWAY51_OS 246 0.0003 (1/2971) 0 * * Os_TE_846393 Chr1 34782262 34782263 - STOWAWAY51_OS 246 0.0003 (1/2990) 0 * * Os_TE_846387 Chr1 34780688 34780689 - ORSgTEMT02400179 221 0.0017 (5/2965) 0 * * Os_TE_846386 Chr1 34780239 34779627 + DS-RICE2N 613 0.2221 (664/2989) 1 Intact Os_TE_846385 Os_TE_846385 Chr1 34779627 34780239 - DS-RICE2N 613 0.2238 (669/2989) 1 Intact Os_TE_846386 Os_TE_846380 Chr1 34776769 34776770 - SC-8_LTR 4951 0.1142 (341/2986) 0 * Os_TE_846379 Os_TE_846379 Chr1 34776765 34776764 + ORSiTERTOOT00381 4988 0.1129 (337/2985) 0 * Os_TE_846380 Os_TE_846354 Chr1 34772459 34772458 + NDNA1TNA_OS 334 0.0807 (229/2838) 0 * * Os_TE_846352 Chr1 34771704 34771703 - MUDRN1_OS 764 0.1099 (318/2893) 0 * * Os_TE_846315 Chr1 34749700 34761114 - RIRE2_LTR 11306 0.1165 (338/2902) 1 Intact * Os_TE_846296 Chr1 34730045 34730046 + RIREX_LTR 8828 0.0014 (4/2958) 0 * Os_TE_846295 Os_TE_846295 Chr1 34730041 34730040 - RIREX_LTR 8828 0.0017 (5/2952) 0 * Os_TE_846296 Os_TE_846294 Chr1 34729966 34729967 + SPMLIKE 10989 0.0013 (4/2984) 0 * Os_TE_846293 Os_TE_846293 Chr1 34729964 34729963 - ORSgTETN00200001 10994 0.0017 (5/2982) 0 * Os_TE_846294 Os_TE_846292 Chr1 34729862 34729863 + RETRO2_LTR 12874 0.2755 (822/2984) 0 * * Os_TE_846275 Chr1 34725943 34725944 - RIREX_LTR 8828 0.0010 (3/2989) 0 * Os_TE_846274 Os_TE_846274 Chr1 34725939 34725938 + RIREX_LTR 8828 0.0010 (3/2987) 0 * Os_TE_846275 Os_TE_846273 Chr1 34725578 34725579 + SINE9_OS 293 0.6772 (2016/2977) 0 * * Os_TE_846269 Chr1 34725086 34725087 + GYPSY-A_LTR 8951 0.0003 (1/2972) 0 * Os_TE_846268 Os_TE_846268 Chr1 34725082 34725081 - SZ-40LTR 2465 0.0003 (1/2978) 0 * Os_TE_846269 Os_TE_846234 Chr1 34703076 34703077 + RETRO2_LTR 12874 0.0018 (5/2780) 0 * Os_TE_846233 Os_TE_846233 Chr1 34703072 34703071 - RETRO2_LTR 12874 0.0018 (5/2786) 0 * Os_TE_846234 Os_TE_846226 Chr1 34702684 34702685 + MDR2 6967 0.1333 (399/2993) 0 * Os_TE_846225 Os_TE_846225 Chr1 34702676 34702675 - MDR2 6967 0.1321 (395/2991) 0 * Os_TE_846226 Os_TE_846211 Chr1 34698986 34698987 + ORSgTETNOOT00908 242 0.0003 (1/2955) 0 * Os_TE_846210 Os_TE_846210 Chr1 34698982 34698981 + ORSgTETNOOT01219 231 0.0003 (1/2959) 0 * Os_TE_846211 Os_TE_846183 Chr1 34676401 34676402 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * * Os_TE_846182 Chr1 34675044 34675043 - STOWAWAY51_OS 246 0.0003 (1/2998) 0 * Os_TE_846181 Os_TE_846181 Chr1 34675041 34675042 - STOWAWAY51_OS 246 0.0003 (1/2996) 0 * Os_TE_846182 Os_TE_846180 Chr1 34674249 34674250 - ORSgTETNOOT00998 140 0.0017 (5/2997) 0 * Os_TE_846179 Os_TE_846179 Chr1 34674248 34674247 + ORSgTETNOOT01139 147 0.0017 (5/2998) 0 * Os_TE_846180 Os_TE_846168 Chr1 34672714 34672713 + NDNA1TNA_OS 334 0.0536 (158/2950) 0 * Os_TE_846167 Os_TE_846167 Chr1 34672710 34672711 - ORSgTEMT00100799 337 0.0492 (146/2968) 0 * Os_TE_846168 Os_TE_846162 Chr1 34671891 34671890 + ORSgTEMT01601591 242 0.1157 (345/2982) 0 * Os_TE_846161 Os_TE_846161 Chr1 34671885 34671886 + STOWAWAY51_OS 246 0.1043 (308/2953) 0 * Os_TE_846162 Os_TE_846130 Chr1 34657959 34657960 - COPIA2-LTR_OS 6433 0.0023 (7/2993) 0 * Os_TE_846129 Os_TE_846129 Chr1 34657955 34657954 + COPIA2-LTR_OS 6433 0.0027 (8/2992) 0 * Os_TE_846130 Os_TE_846077 Chr1 34629020 34629021 - COPIA2-LTR_OS 6433 0.0007 (2/2991) 0 * Os_TE_846076 Os_TE_846076 Chr1 34629016 34629015 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_846077 Os_TE_846064 Chr1 34625431 34625430 + STOWAWAY11_OS 292 0.0017 (5/2978) 0 * Os_TE_846063 Os_TE_846063 Chr1 34625427 34625428 + STOWAWAY51_OS 246 0.0003 (1/2976) 0 * Os_TE_846064 Os_TE_846062 Chr1 34624903 34624555 + NDNA2TNA_OS 346 0.8421 (2485/2951) 1 Intact * Os_TE_846046 Chr1 34613421 34613422 - INDITTO 263 0.0522 (156/2987) 0 * Os_TE_846045 Os_TE_846045 Chr1 34613419 34613418 + INDITTO 263 0.0521 (156/2993) 0 * Os_TE_846046 Os_TE_846037 Chr1 34610395 34610394 - ORSgTEMT00400006 152 0.0007 (2/2988) 0 * * Os_TE_846028 Chr1 34606505 34606506 - COPI2_LTR 4733 0.0094 (28/2977) 0 * Os_TE_846027 Os_TE_846027 Chr1 34606501 34606500 + COPI2_LTR 4733 0.0091 (27/2979) 0 * Os_TE_846028 Os_TE_846025 Chr1 34605599 34605600 - OsSN3 183 0.0004 (1/2653) 0 * * Os_TE_846018 Chr1 34604951 34604950 + RETRO2A_LTR 12895 0.0004 (1/2704) 0 * * Os_TE_845983 Chr1 34596860 34596859 - RETRO2A_LTR 12895 0.0003 (1/2968) 0 * * Os_TE_845981 Chr1 34596031 34595067 - SZ-9LTR 965 0.1981 (591/2983) 1 Intact Os_TE_845979 Os_TE_845979 Chr1 34589600 34596031 - SZ-9LTR 965 0.1973 (589/2985) 1 Intact Os_TE_845981 Os_TE_845947 Chr1 34572102 34572103 + RETROSAT2LTR 12796 0.1335 (400/2997) 0 * Os_TE_845946 Os_TE_845946 Chr1 34572100 34572099 - RETROSAT2LTR 12796 0.1340 (402/2999) 0 * Os_TE_845947 Os_TE_845943 Chr1 34571522 34571523 - COPIA2-LTR_OS 6433 0.0013 (4/2999) 0 * Os_TE_845942 Os_TE_845942 Chr1 34571518 34571517 + COPIA2-LTR_OS 6433 0.0013 (4/2998) 0 * Os_TE_845943 Os_TE_845930 Chr1 34563526 34563527 + COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_845929 Os_TE_845929 Chr1 34563522 34563521 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_845930 Os_TE_845902 Chr1 34555828 34555829 - MuDR4_OS 7610 0.0003 (1/2955) 0 * * Os_TE_845900 Chr1 34554925 34554926 - MuDR4_OS 7610 0.1320 (395/2993) 0 * Os_TE_845899 Os_TE_845899 Chr1 34554918 34554917 - MuDR4_OS 7610 0.1342 (402/2995) 0 * Os_TE_845900 Os_TE_845892 Chr1 34548382 34548381 + ORSgTEMT01601122 212 0.1288 (385/2990) 0 * Os_TE_845891 Os_TE_845891 Chr1 34548379 34548380 + ORSgTEMT01601122 212 0.1262 (377/2987) 0 * Os_TE_845892 Os_TE_845886 Chr1 34547847 34548067 + ORSgTEMT01602119 229 0.8810 (2607/2959) 1 Intact * Os_TE_845884 Chr1 34547663 34547664 + COPI2_LTR 4733 0.0042 (11/2619) 0 * Os_TE_845883 Os_TE_845883 Chr1 34547659 34547658 - COPI2_LTR 4733 0.0035 (10/2846) 0 * Os_TE_845884 Os_TE_845857 Chr1 34537192 34537193 + MDM2 312 0.1279 (383/2994) 0 * * Os_TE_845850 Chr1 34534316 34536350 - SEVERIN-2 1952 0.2283 (605/2650) 1 Intact * Os_TE_845848 Chr1 34531788 34531789 - TNR2A 152 0.0017 (5/2984) 0 * * Os_TE_845846 Chr1 34529245 34529010 + ORSgTEMT01600102 237 0.8759 (2612/2982) 1 Intact Os_TE_845845 Os_TE_845845 Chr1 34529010 34529245 - ORSgTEMT01601208 238 0.8744 (2597/2970) 1 Intact Os_TE_845846 Os_TE_845844 Chr1 34528510 34528509 - TYPEM 227 0.1796 (537/2990) 0 * Os_TE_845843 Os_TE_845843 Chr1 34528509 34528510 - ORSgTEMT02400246 177 0.1821 (545/2993) 0.08 * Os_TE_845844 Os_TE_845838 Chr1 34525465 34525466 - ORSgTETN00200002 7303 0.0004 (1/2483) 0 * * Os_TE_845814 Chr1 34514506 34514505 + INDITTO 263 0.0038 (10/2636) 0 * * Os_TE_845794 Chr1 34506401 34506402 - COPIA2-LTR_OS 6433 0.0003 (1/2972) 0 * Os_TE_845793 Os_TE_845793 Chr1 34506397 34506396 + COPIA2-LTR_OS 6433 0.0003 (1/2959) 0 * Os_TE_845794 Os_TE_845791 Chr1 34506097 34506098 + ORSgTETNOOT00032 218 0.0003 (1/2991) 0 * * Os_TE_845754 Chr1 34498305 34498306 - COPIA2-LTR_OS 6433 0.0003 (1/2955) 0 * * Os_TE_845736 Chr1 34495381 34495382 - ORSgTEMT00900099 250 0.0017 (5/2940) 0 * * Os_TE_845734 Chr1 34495294 34495295 + TNR3 1536 0.7955 (2380/2992) 0 * Os_TE_845733 Os_TE_845733 Chr1 34495292 34495291 - TNR3 1536 0.7750 (2167/2796) 0 * Os_TE_845734 Os_TE_845732 Chr1 34495083 34495082 - STOWAWAY51_OS 246 0.0003 (1/2997) 0 * * Os_TE_845713 Chr1 34476315 34476314 + TWIFB1 3737 0.0004 (1/2856) 0 * * Os_TE_845653 Chr1 34454143 34454142 - ORSgTEMT01600650 234 0.0029 (7/2433) 0 * * Os_TE_845652 Chr1 34453068 34453067 + TREP219 104 0.2816 (669/2376) 0 * * Os_TE_845632 Chr1 34443836 34443835 - TYPEH 309 0.6723 (1933/2875) 0 * Os_TE_845631 Os_TE_845631 Chr1 34443809 34443810 + ORSgTEMT01900006 305 0.6690 (1874/2801) 0 * Os_TE_845632 Os_TE_845618 Chr1 34435716 34435717 - TELIA 141 0.0272 (27/993) 0 * * Os_TE_845607 Chr1 34433389 34433388 + ORSiTERTOOT00348 13055 0.0063 (19/2996) 0 * * Os_TE_845606 Chr1 34432117 34432118 - SC-3_LTR 5748 0.0010 (3/2923) 0 * * Os_TE_845596 Chr1 34427758 34424797 - MuDR3_OS 8604 0.3231 (960/2971) 1 Intact * Os_TE_845593 Chr1 34424766 34424765 - MERMITE18B 1306 0.6253 (1467/2346) -1 * * Os_TE_845584 Chr1 34423173 34423172 - ORSgTEMT01602467 227 0.0013 (4/2999) 0 * Os_TE_845583 Os_TE_845583 Chr1 34423170 34423171 - ORSgTEMT01602082 215 0.0017 (5/3000) 0 * Os_TE_845584 Os_TE_845487 Chr1 34390040 34390039 + COPI2_LTR 4733 0.0003 (1/2976) 0 * * Os_TE_845485 Chr1 34389671 34389672 - ORSiTERTOOT00402 2660 0.0003 (1/2956) 0 * Os_TE_845484 Os_TE_845484 Chr1 34389667 34389666 + ORSiTERTOOT00402 2660 0.0003 (1/2951) 0 * Os_TE_845485 Os_TE_845478 Chr1 34384356 34384357 - RIRE2_LTR 11306 0.0003 (1/2916) 0 * * Os_TE_845470 Chr1 34380155 34380156 + SC-8_LTR 4951 0.0030 (9/2991) 0 * Os_TE_845469 Os_TE_845469 Chr1 34380151 34380150 - SC-8_LTR 4951 0.0030 (9/2991) 0 * Os_TE_845470 Os_TE_845452 Chr1 34374163 34374164 + TRUNCATOR 2918 0.0027 (8/2985) 0 * * Os_TE_845451 Chr1 34373517 34373518 - RETROSAT2LTRA 3112 0.4369 (1308/2994) 0 * * Os_TE_845450 Chr1 34373513 34373512 + TRUNCATOR 2918 0.0003 (1/2979) 0 * * Os_TE_845447 Chr1 34373056 34373057 + ORSiCMCM00100019 2717 0.0063 (19/2993) 0 * * Os_TE_845443 Chr1 34372567 34372566 - RIRE3_LTR 12054 0.4382 (1311/2992) 0 * * Os_TE_845408 Chr1 34354288 34354289 + ORSgTEMT00300122 416 0.1963 (587/2990) 0 * Os_TE_845407 Os_TE_845407 Chr1 34354284 34354283 + ORSiTEMT00300001 383 0.1904 (563/2957) 0 * Os_TE_845408 Os_TE_845406 Chr1 34353682 34353681 + ORSgTEMT01601591 242 0.0003 (1/2970) 0 * Os_TE_845405 Os_TE_845405 Chr1 34353676 34353677 + STOWAWAY51_OS 246 0.0003 (1/2983) 0 * Os_TE_845406 Os_TE_845365 Chr1 34331179 34331180 + RIRE2_LTR 11306 0.0018 (5/2742) 0 * * Os_TE_845304 Chr1 34315332 34315070 - INDITTO 263 0.2004 (475/2370) 1 Intact * Os_TE_845295 Chr1 34313247 34313248 + ORSgTERT00201086 9728 0.0017 (5/2986) 0 * * Os_TE_845274 Chr1 34298296 34298295 - SZ-54_LTR 5203 0.0023 (7/2998) 0 * * Os_TE_845273 Chr1 34298015 34298016 + ORSiTERTOOT00296 5553 0.0003 (1/2993) 0 * Os_TE_845272 Os_TE_845272 Chr1 34298011 34298010 - SC-3_LTR 5748 0.0003 (1/2996) 0 * Os_TE_845273 Os_TE_845260 Chr1 34292236 34292237 - SZ-35LTR 3853 0.3844 (1150/2992) 0 * * Os_TE_845258 Chr1 34291908 34291909 + MPING 430 0.0003 (1/2993) 0 * Os_TE_845257 Os_TE_845257 Chr1 34291906 34291905 - MPING 430 0.0003 (1/2992) 0 * Os_TE_845258 Os_TE_845254 Chr1 34291109 34291110 + TWIF 586 0.2737 (812/2967) 0 * Os_TE_845253 Os_TE_845253 Chr1 34291102 34291101 - ORSiTETNOOT00134 607 0.2772 (823/2969) 0 * Os_TE_845254 Os_TE_845251 Chr1 34290860 34290859 + TWIFB1 3737 0.0007 (2/2929) 0 * * Os_TE_845248 Chr1 34290146 34290147 - CLOUD-3 550 0.4016 (1186/2953) 0 * Os_TE_845247 Os_TE_845247 Chr1 34290138 34290137 + CLOUD-3 550 0.4006 (1187/2963) 0 * Os_TE_845248 Os_TE_845239 Chr1 34289228 34289229 + RIRE5-LTR_OS 6427 0.0005 (1/1875) 0 * * Os_TE_845215 Chr1 34285273 34285274 + RETROSAT4_LTR 13504 0.0501 (150/2992) 0 * * Os_TE_845199 Chr1 34278467 34278468 - ORSgTEMT03800066 376 0.0023 (7/2980) 0 * * Os_TE_845197 Chr1 34277301 34277302 - COPI2_LTR 4733 0.0004 (1/2815) 0 * Os_TE_845196 Os_TE_845196 Chr1 34277297 34277296 + COPI2_LTR 4733 0.0004 (1/2791) 0 * Os_TE_845197 Os_TE_845165 Chr1 34263403 34263402 + ORSgTEMT00600287 363 0.2885 (848/2939) 0 * * Os_TE_845119 Chr1 34257679 34257680 - F524 291 0.2427 (723/2979) 0 * * Os_TE_845117 Chr1 34256764 34256765 - ORSgTETNOOT02565 240 0.0374 (107/2863) 0 * * Os_TE_845112 Chr1 34254098 34238942 + ENSPM4_OS 11610 0.1623 (484/2983) 1 Intact Os_TE_845109 Os_TE_845109 Chr1 34238942 34254098 - ENSPM4_OS 11610 0.1630 (488/2993) 1 Intact Os_TE_845112 Os_TE_845108 Chr1 34237461 34237462 + SPMLIKE 10989 0.0020 (6/2994) 0 * * Os_TE_845106 Chr1 34237404 34237405 - RIREX_LTR 8828 0.0007 (2/2999) 0 * Os_TE_845105 Os_TE_845105 Chr1 34237400 34237399 + RIREX_LTR 8828 0.0007 (2/2998) 0 * Os_TE_845106 Os_TE_845088 Chr1 34230165 34230166 - OSTONOR1_LTR 6440 0.0448 (134/2988) 0 * Os_TE_845087 Os_TE_845087 Chr1 34230161 34230160 + OSTONOR1_LTR 6440 0.0445 (133/2992) 0 * Os_TE_845088 Os_TE_845076 Chr1 34226748 34226747 + TWIF 586 0.0003 (1/2979) 0 * * Os_TE_845075 Chr1 34226175 34226176 - COPI2_LTR 4733 0.0003 (1/2981) 0 * Os_TE_845074 Os_TE_845074 Chr1 34226171 34226170 + COPI2_LTR 4733 0.0003 (1/2977) 0 * Os_TE_845075 Os_TE_845062 Chr1 34222990 34222989 + MERMITEA 1710 0.0007 (2/2982) 0 * * Os_TE_845061 Chr1 34222429 34222430 - ORSgTETN00200001 10994 0.0017 (5/2992) 0 * * Os_TE_845009 Chr1 34204172 34204173 + RIRE3_LTR 12054 0.0007 (2/2993) 0 * Os_TE_845008 Os_TE_845008 Chr1 34204168 34204167 - RIRE3_LTR 12054 0.0007 (2/2992) 0 * Os_TE_845009 Os_TE_845006 Chr1 34203787 34203786 - RIRE3_LTR 12054 0.0354 (106/2994) 0 * * Os_TE_845005 Chr1 34203700 34203701 + AMYLTP 383 0.0017 (5/2991) 0 * * Os_TE_844984 Chr1 34194978 34194977 + STOWAWAY51_OS 246 0.0003 (1/2996) 0 * Os_TE_844983 Os_TE_844983 Chr1 34194972 34194973 - STOWAWAY51_OS 246 0.0003 (1/2995) 0 * Os_TE_844984 Os_TE_844982 Chr1 34194886 34194887 - DS-RICE2N 613 0.0464 (139/2998) 0 * Os_TE_844981 Os_TE_844981 Chr1 34194879 34194878 + DS-RICE2N 613 0.0460 (138/2998) 0 * Os_TE_844982 Os_TE_844980 Chr1 34194681 34194682 + TWIF 586 0.0010 (3/2997) 0 * Os_TE_844979 Os_TE_844979 Chr1 34194674 34194673 - ORSiTETNOOT00156 3648 0.0010 (3/2996) 0 * Os_TE_844980 Os_TE_844978 Chr1 34194390 34194391 - MPING 430 0.0007 (2/2991) 0 * Os_TE_844977 Os_TE_844977 Chr1 34194388 34194387 + MPING 430 0.0007 (2/2984) 0 * Os_TE_844978 Os_TE_844969 Chr1 34190131 34190132 + COPIA2-LTR_OS 6433 0.0014 (4/2781) 0 * Os_TE_844968 Os_TE_844968 Chr1 34190127 34190126 - COPIA2-LTR_OS 6433 0.0026 (7/2730) 0 * Os_TE_844969 Os_TE_844954 Chr1 34185643 34185642 - COPI2_LTR 4733 0.0003 (1/2929) 0 * * Os_TE_844948 Chr1 34183746 34183745 - COPI2_LTR 4733 0.0003 (1/2996) 0 * * Os_TE_844942 Chr1 34179814 34179815 - ORSgTEMT02400246 177 0.7244 (2147/2964) 0 * * Os_TE_844939 Chr1 34177297 34177298 + COPI2_LTR 4733 0.0013 (4/2996) 0 * Os_TE_844938 Os_TE_844938 Chr1 34177293 34177292 - COPI2_LTR 4733 0.0013 (4/2996) 0 * Os_TE_844939 Os_TE_844915 Chr1 34167190 34167191 + ORSgTETNOOT00908 242 0.0003 (1/2991) 0 * * Os_TE_844909 Chr1 34162385 34162386 - SC-3_LTR 5748 0.0003 (1/2989) 0 * * Os_TE_844906 Chr1 34161260 34161261 + MPING 430 0.0006 (1/1784) 0 * * Os_TE_844875 Chr1 34148653 34148654 - OSCOPIA2_LTR 5476 0.0605 (181/2994) 0 * Os_TE_844874 Os_TE_844874 Chr1 34148649 34148648 + OSCOPIA2_LTR 5476 0.0625 (181/2894) 0 * Os_TE_844875 Os_TE_844861 Chr1 34143082 34143081 + ORSgTEMT00500475 149 0.0003 (1/2984) 0 * * Os_TE_844856 Chr1 34141747 34141748 + ORSgTEMT01700465 155 0.0003 (1/2970) 0 * * Os_TE_844853 Chr1 34141126 34141127 + ORSiTEMT01000008 242 0.0003 (1/2999) 0 * Os_TE_844852 Os_TE_844852 Chr1 34141124 34141123 - ORSiTEMT01000008 242 0.0003 (1/2998) 0 * Os_TE_844853 Os_TE_844849 Chr1 34134987 34134988 - MUDRN1_OS 764 0.0342 (102/2984) 0 * * Os_TE_844831 Chr1 34119291 34119290 - TRUNCATOR2_LTR 2904 0.0003 (1/2949) 0 * * Os_TE_844826 Chr1 34118702 34118701 + ORSgTEMT04600037 279 0.0003 (1/2904) 0 * * Os_TE_844801 Chr1 34107060 34107061 - TRUNCATOR2_LTR 2904 0.0003 (1/2997) 0 * * Os_TE_844785 Chr1 34101368 34101369 - NDNA1TNA_OS 334 0.0003 (1/2964) 0 * * Os_TE_844779 Chr1 34098069 34098070 - RETROSAT2LTRA 3112 0.4671 (1393/2982) 0 * * Os_TE_844731 Chr1 34073461 34069545 + RETROSAT4_LTR 13504 0.2918 (865/2964) 1 Solo_LTR Os_TE_844727 Os_TE_844727 Chr1 34069549 34073462 - RETROSAT4_LTR 13504 0.3003 (898/2990) 1 Solo_LTR Os_TE_844731 Os_TE_844725 Chr1 34068808 34068807 - MIDWAY 985 0.0037 (11/2996) 0 * * Os_TE_844714 Chr1 34064373 34047446 + RETROSAT4_LTR 13504 0.3037 (910/2996) 1 Intact Os_TE_844691 Os_TE_844691 Chr1 34047446 34064373 - RETROSAT4_LTR 13504 0.3018 (903/2992) 1 Intact Os_TE_844714 Os_TE_844675 Chr1 34042213 34042214 + SZ-48LTR 3632 0.0010 (3/2961) 0 * Os_TE_844674 Os_TE_844674 Chr1 34042209 34042208 - SZ-48LTR 3632 0.0010 (3/2963) 0 * Os_TE_844675 Os_TE_844662 Chr1 34040067 34040066 - OSLINE1-2 7128 0.0451 (135/2992) 0 * * Os_TE_844655 Chr1 34034413 34034414 - SC-3_LTR 5748 0.0003 (1/2916) 0 * Os_TE_844654 Os_TE_844654 Chr1 34034409 34034408 + ORSiTERTOOT00296 5553 0.0003 (1/2903) 0 * Os_TE_844655 Os_TE_844652 Chr1 34033009 34033010 + OLO24 345 0.0003 (1/2993) 0 * Os_TE_844651 Os_TE_844651 Chr1 34033007 34033006 - OLO24 345 0.0003 (1/2992) 0 * Os_TE_844652 Os_TE_844650 Chr1 34032527 34032528 - INDITTO 263 0.0003 (1/2987) 0 * Os_TE_844649 Os_TE_844649 Chr1 34032525 34032524 - ORSgTETNOOT02417 265 0.0003 (1/2996) 0 * Os_TE_844650 Os_TE_844641 Chr1 34031425 34031424 + RETROSAT4_LTR 13504 0.0003 (1/2932) 0 * * Os_TE_844605 Chr1 34006824 34006823 - RETROSAT2LTR 12796 0.0003 (1/2996) 0 * * Os_TE_844594 Chr1 34001703 34001704 + TRUNCATOR 2918 0.0003 (1/2967) 0 * * Os_TE_844589 Chr1 33997284 33997285 - OSCOPIA2_LTR 5476 0.0003 (1/2905) 0 * Os_TE_844588 Os_TE_844588 Chr1 33997280 33997279 + OSCOPIA2_LTR 5476 0.0003 (1/2908) 0 * Os_TE_844589 Os_TE_844569 Chr1 33979588 33988974 + RIRE5-LTR_OS 6427 0.2807 (827/2946) 1 Intact * Os_TE_844539 Chr1 33955729 33955728 - TYPEM 227 0.0003 (1/2967) 0 * Os_TE_844538 Os_TE_844538 Chr1 33955728 33955729 - ORSgTEMT02400246 177 0.0003 (1/2975) 0 * Os_TE_844539 Os_TE_844527 Chr1 33948895 33948894 - TEMPINDAS 4259 0.0044 (13/2987) 0 * * Os_TE_844526 Chr1 33948536 33948324 + ORSgTEMT01601122 212 0.2860 (854/2986) 1 Intact Os_TE_844525 Os_TE_844525 Chr1 33948296 33948536 + ORSgTEMT01601122 212 0.2840 (845/2975) 1 Intact Os_TE_844526 Os_TE_844521 Chr1 33947625 33947624 + ORSgTEMT00600376 329 0.0007 (2/2970) 0 * * Os_TE_844491 Chr1 33937800 33937799 + GYPSY-A_LTR 8951 0.0037 (10/2714) 0 * * Os_TE_844482 Chr1 33934945 33934946 + OSTE33 1012 0.6363 (1872/2942) 0 * Os_TE_844481 Os_TE_844481 Chr1 33934936 33934935 + OSTE33 1012 0.6303 (1824/2894) 0 * Os_TE_844482 Os_TE_844473 Chr1 33932244 33932245 - SC-8_LTR 4951 0.0010 (3/2974) 0 * Os_TE_844472 Os_TE_844472 Chr1 33932240 33932239 + SC-8_LTR 4951 0.0010 (3/2987) 0 * Os_TE_844473 Os_TE_844470 Chr1 33930705 33930706 + STOWAWAY51_OS 246 0.0003 (1/2997) 0 * * Os_TE_844462 Chr1 33924953 33924954 + ORSiTERTOOT00226 792 0.0004 (1/2582) 0 * Os_TE_844461 Os_TE_844461 Chr1 33924949 33924948 - SZ-22_LTR 4403 0.0003 (1/2930) 0 * Os_TE_844462 Os_TE_844440 Chr1 33914748 33914749 + COPI2_LTR 4733 0.0007 (2/2964) 0 * Os_TE_844439 Os_TE_844439 Chr1 33914744 33914743 - COPI2_LTR 4733 0.0007 (2/2969) 0 * Os_TE_844440 Os_TE_844438 Chr1 33914651 33914652 + RIREX_LTR 8828 0.0010 (3/2986) 0 * Os_TE_844437 Os_TE_844437 Chr1 33914647 33914646 - RIREX_LTR 8828 0.0010 (3/2990) 0 * Os_TE_844438 Os_TE_844436 Chr1 33914331 33914332 - RIRE2_LTR 11306 0.0515 (154/2992) 0 * * Os_TE_844432 Chr1 33912868 33912869 - RETROSAT2LTR 12796 0.6699 (1995/2978) 0 * Os_TE_844431 Os_TE_844431 Chr1 33912866 33912865 + RETROSAT2LTRA 3112 0.6689 (1980/2960) 0 * Os_TE_844432 Os_TE_844430 Chr1 33912181 33912182 - SZ-48LTR 3632 0.0054 (16/2963) 0 * Os_TE_844429 Os_TE_844429 Chr1 33912177 33912176 + SZ-48LTR 3632 0.0051 (15/2956) 0 * Os_TE_844430 Os_TE_844410 Chr1 33904704 33904705 - SZ-35LTR 3853 0.0003 (1/2992) 0 * * Os_TE_844408 Chr1 33904572 33904573 + RETROSAT4_LTR 13504 0.0003 (1/2959) 0 * Os_TE_844407 Os_TE_844407 Chr1 33904568 33904567 - RETROSAT4_LTR 13504 0.0003 (1/2950) 0 * Os_TE_844408 Os_TE_844402 Chr1 33902242 33902243 - OSCOPIA2_LTR 5476 0.0173 (52/2999) 0 * Os_TE_844401 Os_TE_844401 Chr1 33902238 33902237 + OSCOPIA2_LTR 5476 0.0170 (51/2997) 0 * Os_TE_844402 Os_TE_844360 Chr1 33882361 33882360 + CASTAWAY-3 314 0.0515 (154/2992) 0 * * Os_TE_844359 Chr1 33882211 33882212 - COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_844358 Os_TE_844358 Chr1 33882207 33882206 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_844359 Os_TE_844357 Chr1 33881230 33880110 + SETARIA2 1142 0.2598 (710/2733) 1 Intact Os_TE_844355 Os_TE_844355 Chr1 33880043 33881229 + SETARIA2 1142 0.2912 (829/2847) 1 Intact Os_TE_844357 Os_TE_844344 Chr1 33875447 33875446 - ORSgTEMT00501568 147 0.0003 (1/2910) 0 * * Os_TE_844315 Chr1 33870064 33870065 + RIRE2_LTR 11306 0.0010 (3/2991) 0 * Os_TE_844314 Os_TE_844314 Chr1 33870060 33870059 - RIRE2_LTR 11306 0.0010 (3/2994) 0 * Os_TE_844315 Os_TE_844309 Chr1 33869091 33869092 + ORSgTETNOOT00032 218 0.0475 (141/2970) 0 * * Os_TE_844273 Chr1 33842635 33842636 - RETRO1_LTR 8314 0.0003 (1/2969) 0 * * Os_TE_844271 Chr1 33842259 33842258 - ORSgTEMT02400246 177 0.0455 (136/2988) 0 * Os_TE_844270 Os_TE_844270 Chr1 33842258 33842259 - TYPEM 227 0.0448 (134/2989) 0 * Os_TE_844271 Os_TE_844259 Chr1 33837137 33837138 + INDITTO 263 0.0003 (1/2995) 0 * Os_TE_844258 Os_TE_844258 Chr1 33837135 33837134 - INDITTO 263 0.0003 (1/2995) 0 * Os_TE_844259 Os_TE_844257 Chr1 33836346 33836347 - RIREX_LTR 8828 0.0003 (1/2998) 0 * Os_TE_844256 Os_TE_844256 Chr1 33836342 33836341 + RIREX_LTR 8828 0.0003 (1/2998) 0 * Os_TE_844257 Os_TE_844255 Chr1 33834925 33834926 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * * Os_TE_844241 Chr1 33821542 33821543 + COPIA2-LTR_OS 6433 0.0007 (2/2950) 0 * Os_TE_844240 Os_TE_844240 Chr1 33821538 33821537 - COPIA2-LTR_OS 6433 0.0007 (2/2952) 0 * Os_TE_844241 Os_TE_844232 Chr1 33818479 33818480 - COPI2_LTR 4733 0.0003 (1/2949) 0 * Os_TE_844231 Os_TE_844231 Chr1 33818475 33818474 + COPI2_LTR 4733 0.0003 (1/2951) 0 * Os_TE_844232 Os_TE_844230 Chr1 33816477 33816478 - COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_844229 Os_TE_844229 Chr1 33816473 33816472 + COPI2_LTR 4733 0.0003 (1/2997) 0 * Os_TE_844230 Os_TE_844228 Chr1 33814246 33814245 + COPI2_LTR 4733 0.0003 (1/2998) 0 * * Os_TE_844223 Chr1 33810518 33810519 - COPI2_LTR 4733 0.1302 (390/2996) 0 * * Os_TE_844193 Chr1 33798420 33798419 - ORSgTEMT00600085 364 0.0831 (248/2986) 0 * * Os_TE_844174 Chr1 33795285 33795286 - ORSgTETNOOT02417 265 0.0083 (18/2171) 0 * Os_TE_844173 Os_TE_844173 Chr1 33795283 33795282 - INDITTO 263 0.0057 (17/2964) 0 * Os_TE_844174 Os_TE_844164 Chr1 33790119 33790118 - NDNA1TNA_OS 334 0.0004 (1/2673) 0 * * Os_TE_844163 Chr1 33790080 33790081 - RETROSAT2LTR 12796 0.0005 (1/1940) 0 * * Os_TE_844162 Chr1 33790031 33790032 + OSTE33 1012 0.0333 (88/2643) 0 * Os_TE_844161 Os_TE_844161 Chr1 33790023 33790022 + OSTE33 1012 0.0577 (153/2650) 0 * Os_TE_844162 Os_TE_844141 Chr1 33782303 33782304 + NDNA1TNA_OS 334 0.0155 (46/2976) 0 * * Os_TE_844116 Chr1 33776576 33776577 - COPI2_LTR 4733 0.0162 (47/2897) 0 * * Os_TE_844114 Chr1 33775682 33775683 - MuDR4_OS 7610 0.2961 (787/2658) -1 * Os_TE_844113 Os_TE_844113 Chr1 33775676 33775675 - MuDR4_OS 7610 0.3221 (877/2723) -1 * Os_TE_844114 Os_TE_844111 Chr1 33775577 33775578 - OSTE33 1012 0.0007 (2/2750) 0 * Os_TE_844110 Os_TE_844110 Chr1 33775568 33775567 + OSTE33 1012 0.0007 (2/2753) 0 * Os_TE_844111 Os_TE_844082 Chr1 33769027 33769028 - TELIA 141 0.0003 (1/2978) 0 * Os_TE_844081 Os_TE_844081 Chr1 33769019 33769018 + TELIA 141 0.0003 (1/2979) 0 * Os_TE_844082 Os_TE_844079 Chr1 33768112 33768111 - STOWAWAY51_OS 246 0.0003 (1/2982) 0 * * Os_TE_844072 Chr1 33764707 33764708 - INDITTO 263 0.2724 (785/2882) 0 * Os_TE_844071 Os_TE_844071 Chr1 33764705 33764704 + INDITTO 263 0.2727 (785/2879) 0 * Os_TE_844072 Os_TE_844036 Chr1 33754677 33754676 + ORSgTEMT01601591 242 0.0007 (2/2971) 0 * * Os_TE_844032 Chr1 33754219 33750818 + GYPSY-A_LTR 8951 0.3300 (984/2982) 1 Solo_LTR * Os_TE_844008 Chr1 33738264 33738265 + AMYLTP 383 0.0013 (4/2984) 0 * Os_TE_844007 Os_TE_844007 Chr1 33738256 33738255 - AMYLTP 383 0.0010 (3/2983) 0 * Os_TE_844008 Os_TE_843996 Chr1 33728418 33728419 - COPIA2-LTR_OS 6433 0.0003 (1/2956) 0 * Os_TE_843995 Os_TE_843995 Chr1 33728414 33728413 + COPIA2-LTR_OS 6433 0.0003 (1/2970) 0 * Os_TE_843996 Os_TE_843984 Chr1 33725367 33725366 - ORSgTEMT02400246 177 0.3051 (793/2599) 0 * * Os_TE_843970 Chr1 33721481 33720424 - RETRO2_LTR 12874 0.3334 (996/2987) 1 Solo_LTR Os_TE_843969 Os_TE_843969 Chr1 33720425 33721481 + ORSgTERTOOT00009 12852 0.3343 (999/2988) 1 Intact Os_TE_843970 Os_TE_843967 Chr1 33719290 33719291 - RIRE2_LTR 11306 0.0003 (1/2977) 0 * Os_TE_843966 Os_TE_843966 Chr1 33719286 33719285 - ORSgTERT00201216 11284 0.0003 (1/2976) 0 * Os_TE_843967 Os_TE_843928 Chr1 33702922 33702923 + CASTAWAY 364 0.0510 (147/2881) 0 * Os_TE_843927 Os_TE_843927 Chr1 33702921 33702920 - ORSgTEMT00600085 364 0.0546 (157/2878) 0 * Os_TE_843928 Os_TE_843910 Chr1 33690550 33690551 + RETROSAT4_LTR 13504 0.1431 (400/2796) 0 * Os_TE_843909 Os_TE_843909 Chr1 33690546 33690545 - RETROSAT4_LTR 13504 0.1921 (573/2983) 0 * Os_TE_843910 Os_TE_843895 Chr1 33682048 33682049 - ORSgTEMT01400006 213 0.0041 (11/2677) 0 * * Os_TE_843872 Chr1 33675816 33675815 + SZ-30_LTR 6377 0.0084 (25/2984) 0 * * Os_TE_843871 Chr1 33675547 33675548 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * * Os_TE_843869 Chr1 33675387 33675388 - SC-8_LTR 4951 0.0003 (1/2993) 0 * Os_TE_843868 Os_TE_843868 Chr1 33675383 33675382 + SC-8_LTR 4951 0.0003 (1/2993) 0 * Os_TE_843869 Os_TE_843844 Chr1 33659191 33659192 - RIREX_LTR 8828 0.0007 (2/2987) 0 * * Os_TE_843834 Chr1 33649992 33643549 + RIRE5-LTR_OS 6427 0.3466 (1036/2989) 1 Intact Os_TE_843830 Os_TE_843830 Chr1 33643548 33649992 - RIRE5-LTR_OS 6427 0.3530 (1058/2997) 1 Intact Os_TE_843834 Os_TE_843821 Chr1 33638917 33638916 + TWIFB1 3737 0.0033 (10/2996) 0 * * Os_TE_843810 Chr1 33631897 33631898 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * * Os_TE_843807 Chr1 33631681 33631682 - COPI2_LTR 4733 0.0007 (2/2988) 0 * Os_TE_843806 Os_TE_843806 Chr1 33631677 33631676 + COPI2_LTR 4733 0.0010 (3/2993) 0 * Os_TE_843807 Os_TE_843803 Chr1 33630600 33630601 - INDITTO 263 0.2075 (621/2993) 0 * Os_TE_843802 Os_TE_843802 Chr1 33630598 33630597 + ORSgTETNOOT02316 263 0.2080 (623/2995) 0 * Os_TE_843803 Os_TE_843800 Chr1 33630317 33630318 - COPI2_LTR 4733 0.0003 (1/2989) 0 * Os_TE_843799 Os_TE_843799 Chr1 33630313 33630312 + COPI2_LTR 4733 0.0003 (1/2990) 0 * Os_TE_843800 Os_TE_843797 Chr1 33629673 33629672 - COPI2_LTR 4733 0.0003 (1/2949) 0 * * Os_TE_843793 Chr1 33628333 33628334 - COPIA2-LTR_OS 6433 0.0003 (1/2986) 0 * Os_TE_843792 Os_TE_843792 Chr1 33628329 33628328 + COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_843793 Os_TE_843782 Chr1 33618913 33618914 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * * Os_TE_843770 Chr1 33617144 33617143 + ORSgTEMT01601591 242 0.0003 (1/2996) 0 * Os_TE_843769 Os_TE_843769 Chr1 33617138 33617139 + STOWAWAY51_OS 246 0.0003 (1/2998) 0 * Os_TE_843770 Os_TE_843733 Chr1 33605361 33605362 - COPIA2-LTR_OS 6433 0.0003 (1/2986) 0 * Os_TE_843732 Os_TE_843732 Chr1 33605357 33605356 + COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * Os_TE_843733 Os_TE_843728 Chr1 33603451 33603452 - SZ-36LTR 5825 0.0017 (2/1212) 0 * * Os_TE_843718 Chr1 33601320 33601065 - ORSgTETNOOT02162 259 0.3522 (1053/2990) 1 Intact Os_TE_843716 Os_TE_843716 Chr1 33601062 33601320 - ORSgTETNOOT01413 258 0.3442 (1010/2934) 1 Intact Os_TE_843718 Os_TE_843702 Chr1 33593601 33593364 + ORSgTEMT01601809 239 0.3467 (1022/2948) 1 Intact Os_TE_843700 Os_TE_843700 Chr1 33593364 33593601 - ORSgTEMT01601208 238 0.3621 (1056/2916) 1 Intact Os_TE_843702 Os_TE_843699 Chr1 33593270 33593269 + TWIFB1 3737 0.0003 (1/2991) 0 * * Os_TE_843698 Chr1 33593229 33593230 + RETRO2_LTR 12874 0.0013 (4/2993) 0 * Os_TE_843697 Os_TE_843697 Chr1 33593225 33593224 - RETRO1_LTR 8314 0.0014 (4/2956) 0 * Os_TE_843698 Os_TE_843695 Chr1 33593164 33593163 - SZ-35LTR 3853 0.6309 (1885/2988) 0 * * Os_TE_843693 Chr1 33592665 33592664 - SZ-48LTR 3632 0.0034 (10/2976) 0 * * Os_TE_843685 Chr1 33592174 33592175 + SZ-48LTR 3632 0.1853 (544/2935) 0 * * Os_TE_843681 Chr1 33591705 33591704 + RIRE2_LTR 11306 0.0003 (1/2969) 0 * * Os_TE_843680 Chr1 33591623 33591624 + RIRE2_LTR 11306 0.0017 (5/2980) 0 * Os_TE_843679 Os_TE_843679 Chr1 33591619 33591618 - RIRE2_LTR 11306 0.0047 (5/1062) 0 * Os_TE_843680 Os_TE_843591 Chr1 33493313 33493553 - ORSiTETNOOT00015 241 0.3672 (1053/2868) 1 Intact * Os_TE_843590 Chr1 33489511 33489510 - TEMPINDAS 4259 0.0003 (1/2991) 0 * * Os_TE_843589 Chr1 33489421 33489420 - RPO_OS 1983 0.0017 (5/2986) 0 * * Os_TE_843576 Chr1 33484456 33484455 + AMYLTP 383 0.0013 (4/2983) 0 * Os_TE_843575 Os_TE_843575 Chr1 33484451 33484452 - AMYLTP 383 0.0017 (5/2978) 0 * Os_TE_843576 Os_TE_843574 Chr1 33482453 33482452 + F569 228 0.6589 (1970/2990) 0 * * Os_TE_843571 Chr1 33481840 33481580 - STOWAWAY41_OS 264 0.3771 (1043/2766) 1 Intact * Os_TE_843566 Chr1 33481443 33481442 - STOWAWAY51_OS 246 0.0014 (3/2198) 0 * Os_TE_843565 Os_TE_843565 Chr1 33481440 33481441 - STOWAWAY44_OS 240 0.0014 (4/2884) 0 * Os_TE_843566 Os_TE_843562 Chr1 33475187 33475186 - LINE-4_OS 3662 0.0003 (1/2982) 0 * * Os_TE_843544 Chr1 33466145 33466144 - SZ-35LTR 3853 0.0273 (81/2969) 0 * * Os_TE_843535 Chr1 33459180 33459179 - OLO24 345 0.0177 (53/2995) 0 * * Os_TE_843526 Chr1 33455751 33455486 - STOWAWAY45_OS 266 0.3299 (928/2813) 1 Intact Os_TE_843524 Os_TE_843524 Chr1 33455485 33455751 + STOWAWAY45_OS 266 0.3551 (1054/2968) 1 Intact Os_TE_843526 Os_TE_843523 Chr1 33455375 33455236 + ORSgTEMT00500201 140 0.3595 (1071/2979) 1 Intact Os_TE_843522 Os_TE_843522 Chr1 33455229 33455375 + ORSgTEMT00501005 147 0.3582 (1063/2968) 1 Intact Os_TE_843523 Os_TE_843520 Chr1 33454931 33454930 - STOWAWAY11_OS 292 0.0154 (46/2983) 0 * * Os_TE_843513 Chr1 33452384 33452385 + Cassandra_OS-LTR 764 0.6095 (1764/2894) 0 * * Os_TE_843507 Chr1 33448721 33448722 + COPI2_LTR 4733 0.0007 (2/2995) 0 * Os_TE_843506 Os_TE_843506 Chr1 33448717 33448716 - COPI2_LTR 4733 0.0007 (2/2996) 0 * Os_TE_843507 Os_TE_843501 Chr1 33447535 33442133 - MuDR2_OS 6770 0.3460 (1026/2965) 1 Intact * Os_TE_843449 Chr1 33425129 33425130 - RIRE3A_LTR 10580 0.0839 (243/2898) 0 * * Os_TE_843403 Chr1 33411548 33411547 - TYPEM 227 0.5879 (1746/2970) 0 * Os_TE_843402 Os_TE_843402 Chr1 33411547 33411548 - ORSgTEMT02400246 177 0.5831 (1736/2977) 0 * Os_TE_843403 Os_TE_843392 Chr1 33406422 33406423 + TRUNCATOR 2918 0.0003 (1/2948) 0 * * Os_TE_843391 Chr1 33405785 33405786 - MuDR4_OS 7610 0.0020 (6/2950) 0 * Os_TE_843390 Os_TE_843390 Chr1 33405778 33405777 - MuDR4_OS 7610 0.0017 (5/2945) 0 * Os_TE_843391 Os_TE_843387 Chr1 33403869 33403870 + RIRE3_LTR 12054 0.0003 (1/2981) 0 * * Os_TE_843367 Chr1 33391670 33391671 + ORSgTETNOOT00908 242 0.0003 (1/2971) 0 * * Os_TE_843324 Chr1 33378243 33378242 - TRUNCATOR 2918 0.0104 (31/2986) 0 * Os_TE_843323 Os_TE_843323 Chr1 33378242 33378243 + TRUNCATOR 2918 0.0114 (34/2992) 0 * Os_TE_843324 Os_TE_843281 Chr1 33361632 33361633 - COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_843280 Os_TE_843280 Chr1 33361628 33361627 + COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_843281 Os_TE_843268 Chr1 33350969 33350970 - HARB-1_OS 5166 0.0003 (1/2997) 0 * Os_TE_843267 Os_TE_843267 Chr1 33350967 33350966 + HARB-1_OS 5166 0.0003 (1/2996) 0 * Os_TE_843268 Os_TE_843264 Chr1 33349849 33349850 + COPI2_LTR 4733 0.0007 (2/2948) 0 * Os_TE_843263 Os_TE_843263 Chr1 33349845 33349844 - COPI2_LTR 4733 0.0010 (3/2945) 0 * Os_TE_843264 Os_TE_843251 Chr1 33346881 33346882 - TRUNCATOR 2918 0.0166 (43/2589) 0 * * Os_TE_843192 Chr1 33327730 33327729 - ORSgTEMT00100799 337 0.0017 (5/2997) 0 * * Os_TE_843165 Chr1 33320384 33320385 - RETROSAT2LTR 12796 0.0003 (1/2970) 0 * * Os_TE_843151 Chr1 33312483 33312484 - CRATA 4786 0.0015 (4/2733) 0 * Os_TE_843150 Os_TE_843150 Chr1 33312476 33312475 + CRATA 4786 0.0014 (4/2896) 0 * Os_TE_843151 Os_TE_843126 Chr1 33304619 33304618 - RETRO2_LTR 12874 0.3602 (1064/2954) 0 * * Os_TE_843110 Chr1 33297456 33297455 + HELITRON8_OS 8831 0.0003 (1/2950) 0 * * Os_TE_843109 Chr1 33297379 33297380 - RIRE3A_LTR 10580 0.0003 (1/2964) 0 * * Os_TE_843098 Chr1 33295007 33295008 - ORSgTEMT02400179 221 0.1673 (468/2797) 0 * Os_TE_843097 Os_TE_843097 Chr1 33295006 33295005 - TYPEM 227 0.1732 (493/2847) 0 * Os_TE_843098 Os_TE_843071 Chr1 33285431 33285432 - DS-RICE2N 613 0.0003 (1/2992) 0 * * Os_TE_843070 Chr1 33285104 33285105 - ORSgTETN00200001 10994 0.1707 (504/2953) 0 * Os_TE_843069 Os_TE_843069 Chr1 33285102 33285101 + SPMLIKE 10989 0.1808 (540/2986) 0 * Os_TE_843070 Os_TE_843067 Chr1 33284251 33284252 + JOUZHENA 607 0.0017 (5/2996) 0 * Os_TE_843066 Os_TE_843066 Chr1 33284244 33284243 - JOUZHENA 607 0.0017 (5/2995) 0 * Os_TE_843067 Os_TE_843064 Chr1 33281105 33281106 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_843063 Os_TE_843063 Chr1 33281101 33281100 - COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_843064 Os_TE_843036 Chr1 33276290 33276289 - CACTA-H 1152 0.1659 (494/2978) 0 * Os_TE_843035 Os_TE_843035 Chr1 33276289 33276290 + CACTA-B 1103 0.1711 (511/2986) 0 * Os_TE_843036 Os_TE_843014 Chr1 33270555 33270554 - COPI2_LTR 4733 0.0004 (1/2516) 0 * * Os_TE_842971 Chr1 33256937 33256936 - ORSgTEMT01700216 124 0.0017 (5/2986) 0 * Os_TE_842970 Os_TE_842970 Chr1 33256934 33256935 + ORSgTEMT01701101 133 0.0017 (5/2988) 0 * Os_TE_842971 Os_TE_842969 Chr1 33256505 33256506 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_842968 Os_TE_842968 Chr1 33256501 33256500 - COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_842969 Os_TE_842947 Chr1 33250641 33250640 - STOWAWAY51_OS 246 0.0013 (4/2993) 0 * * Os_TE_842945 Chr1 33250381 33250380 + STOWAWAY50_OS 174 0.0017 (5/2998) 0 * Os_TE_842944 Os_TE_842944 Chr1 33250378 33250379 - STOWAWAY50_OS 174 0.0013 (4/2998) 0 * Os_TE_842945 Os_TE_842926 Chr1 33240368 33240367 - TELIA 141 0.0008 (1/1207) 0 * * Os_TE_842922 Chr1 33239057 33239056 - TNR2A 152 0.1105 (134/1213) 0 * * Os_TE_842905 Chr1 33233053 33233054 - DS-RICE2N 613 0.1194 (146/1223) 0 * Os_TE_842904 Os_TE_842904 Chr1 33233047 33233046 + DS-RICE2N 613 0.1198 (147/1227) 0 * Os_TE_842905 Os_TE_842900 Chr1 33229972 33229598 - TYPEU3 380 0.3923 (1171/2985) 1 Intact * Os_TE_842898 Chr1 33229036 33229037 - ORSgTEMT00100921 319 0.6194 (1855/2995) 0 * Os_TE_842897 Os_TE_842897 Chr1 33229030 33229029 - ORSgTEMT00101063 320 0.0033 (4/1220) 0 * Os_TE_842898 Os_TE_842893 Chr1 33227379 33227036 - ORSgTEMT03000007 372 0.3477 (1033/2971) 1 Intact * Os_TE_842888 Chr1 33224825 33224826 - F569 228 0.0057 (17/2985) 0 * Os_TE_842887 Os_TE_842887 Chr1 33224823 33224822 + F569 228 0.0057 (17/2988) 0 * Os_TE_842888 Os_TE_842884 Chr1 33224464 33224463 - ORSgTETN00200001 10994 0.0122 (36/2950) 0 * * Os_TE_842882 Chr1 33222504 33222505 - MPING 430 0.0047 (14/2997) 0 * Os_TE_842881 Os_TE_842881 Chr1 33222502 33222501 + MPING 430 0.0047 (14/2996) 0 * Os_TE_842882 Os_TE_842877 Chr1 33221843 33221844 - ORSgTEMT01601768 238 0.5857 (1740/2971) 0 * * Os_TE_842875 Chr1 33219936 33219937 + SZ-55_LTR 10318 0.0003 (1/2993) 0 * Os_TE_842874 Os_TE_842874 Chr1 33219932 33219931 - SZ-55_LTR 10318 0.0003 (1/2994) 0 * Os_TE_842875 Os_TE_842870 Chr1 33217616 33217617 + ORSiTERTOOT00332 5395 0.0450 (135/2998) 0 * Os_TE_842869 Os_TE_842869 Chr1 33217612 33217611 - ORSiTERTOOT00332 5395 0.0454 (136/2998) 0 * Os_TE_842870 Os_TE_842845 Chr1 33205175 33204492 - OSTE24 683 0.3058 (861/2816) 1 Intact Os_TE_842844 Os_TE_842844 Chr1 33204493 33205174 - OSTE24 683 0.2738 (745/2721) 1 Intact Os_TE_842845 Os_TE_842838 Chr1 33203683 33203682 - RIREX_LTR 8828 0.0003 (1/2984) 0 * * Os_TE_842823 Chr1 33198542 33198543 + HELITRON8_OS 8831 0.0003 (1/2910) 0 * * Os_TE_842822 Chr1 33198500 33198501 - ORSgTEMT01701362 149 0.0041 (12/2962) 0 * * Os_TE_842810 Chr1 33195262 33195026 - ORSgTEMT01601834 234 0.3271 (979/2993) 1 Intact Os_TE_842809 Os_TE_842809 Chr1 33195023 33195256 + ORSgTEMT01602606 192 0.3330 (977/2934) 1 Intact Os_TE_842810 Os_TE_842776 Chr1 33175800 33175801 - ORSgTEMT03800107 369 0.0020 (6/2999) 0 * * Os_TE_842775 Chr1 33174286 33174287 - ORSgTEMT02000040 196 0.1824 (545/2988) 0 * * Os_TE_842757 Chr1 33166033 33166032 + OSTE33 1012 0.0947 (280/2957) 0 * * Os_TE_842755 Chr1 33165721 33165720 - NDNA1TNA_OS 334 0.0024 (7/2917) 0 * * Os_TE_842677 Chr1 33097392 33097393 + F569 228 0.1349 (106/786) 0 * * Os_TE_842663 Chr1 33086479 33086212 - INDITTO 263 0.1659 (496/2989) 1 Intact * Os_TE_842661 Chr1 33085946 33086208 + INDITTO 263 0.1718 (514/2992) 1 Intact * Os_TE_842653 Chr1 33084043 33084044 + COPIA2-LTR_OS 6433 0.0003 (1/2980) 0 * Os_TE_842652 Os_TE_842652 Chr1 33084039 33084038 - COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_842653 Os_TE_842649 Chr1 33083895 33083894 + ORSgTETNOOT01668 244 0.0226 (67/2971) 0 * * Os_TE_842648 Chr1 33082018 33082019 - ORSiTETNOOT00134 607 0.0003 (1/2881) 0 * Os_TE_842647 Os_TE_842647 Chr1 33082011 33082010 + TWIF 586 0.0004 (1/2832) 0 * Os_TE_842648 Os_TE_842645 Chr1 33081664 33081665 - STOWAWAY51_OS 246 0.0003 (1/2948) 0 * * Os_TE_842639 Chr1 33077390 33077389 + STOWAWAY51_OS 246 0.0010 (3/2997) 0 * Os_TE_842638 Os_TE_842638 Chr1 33077380 33077381 + ORSgTEMT01601591 242 0.0007 (2/2997) 0 * Os_TE_842639 Os_TE_842637 Chr1 33076850 33076849 + ORSgTEMT00101674 340 0.2941 (877/2982) 0 * Os_TE_842636 Os_TE_842636 Chr1 33076849 33076850 + NDNA1TNA_OS 334 0.2901 (867/2989) 0 * Os_TE_842637 Os_TE_842618 Chr1 33072690 33072691 + ORSgTEMT00500906 148 0.6032 (1379/2286) 0 * * Os_TE_842573 Chr1 33049408 33049409 - RETRO2_LTR 12874 0.0024 (7/2915) 0 * Os_TE_842572 Os_TE_842572 Chr1 33049404 33049403 + RETRO2A_LTR 12895 0.0024 (7/2924) 0 * Os_TE_842573 Os_TE_842564 Chr1 33048808 33048807 - RIRE2_LTR 11306 0.0023 (7/2993) 0 * * Os_TE_842544 Chr1 33031435 33031434 + OSTE18 129 0.0060 (18/2988) 0 * * Os_TE_842542 Chr1 33031203 33031202 - TRUNCATOR 2918 0.0084 (25/2985) 0 * Os_TE_842541 Os_TE_842541 Chr1 33031202 33031203 + TRUNCATOR 2918 0.0094 (28/2980) 0 * Os_TE_842542 Os_TE_842537 Chr1 33026519 33015203 + MuDR3_OS 8604 0.3343 (992/2967) 1 Intact Os_TE_842528 Os_TE_842528 Chr1 33015203 33026515 - MuDR3_OS 8604 0.3249 (956/2942) 1 Intact Os_TE_842537 Os_TE_842520 Chr1 33012817 33012818 + OLO24 345 0.0030 (9/2996) 0 * Os_TE_842519 Os_TE_842519 Chr1 33012815 33012814 - OLO24 345 0.0027 (8/2994) 0 * Os_TE_842520 Os_TE_842500 Chr1 33010174 33010173 + ORSgTETNOOT00012 241 0.0003 (1/2957) 0 * * Os_TE_842489 Chr1 33002098 33002099 + ORSiTERTOOT00296 5553 0.0003 (1/2995) 0 * Os_TE_842488 Os_TE_842488 Chr1 33002094 33002093 - SC-3_LTR 5748 0.0003 (1/2995) 0 * Os_TE_842489 Os_TE_842473 Chr1 32994983 32994984 - HARB-1_OS 5166 0.0007 (2/2977) 0 * Os_TE_842472 Os_TE_842472 Chr1 32994981 32994980 + HARB-1_OS 5166 0.0007 (2/2976) 0 * Os_TE_842473 Os_TE_842462 Chr1 32984372 32984373 + DITAIL 271 0.0037 (11/2979) 0 * * Os_TE_842447 Chr1 32982720 32982721 + MUDR_N7_OS 1283 0.1517 (435/2867) 0 * Os_TE_842446 Os_TE_842446 Chr1 32982712 32982711 - MUDR_N7_OS 1283 0.1513 (433/2861) 0 * Os_TE_842447 Os_TE_842441 Chr1 32981357 32981358 - RETROSAT2LTR 12796 0.0057 (17/2995) 0 * Os_TE_842440 Os_TE_842440 Chr1 32981355 32981354 + RETROSAT2LTR 12796 0.0057 (17/2995) 0 * Os_TE_842441 Os_TE_842433 Chr1 32979029 32979028 - COPI2_LTR 4733 0.0004 (1/2832) 0 * * Os_TE_842399 Chr1 32955755 32955756 - COPIA2-LTR_OS 6433 0.0003 (1/2984) 0 * Os_TE_842398 Os_TE_842398 Chr1 32955751 32955750 - COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * Os_TE_842399 Os_TE_842368 Chr1 32949414 32949415 + ORSgTEMT05000092 279 0.0013 (4/2994) 0 * Os_TE_842367 Os_TE_842367 Chr1 32949412 32949411 - SUSU 279 0.0013 (4/2996) 0 * Os_TE_842368 Os_TE_842365 Chr1 32948689 32948690 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_842364 Os_TE_842364 Chr1 32948685 32948684 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_842365 Os_TE_842340 Chr1 32937616 32937617 + JOUZHENA 607 0.0007 (2/2972) 0 * Os_TE_842339 Os_TE_842339 Chr1 32937609 32937608 - JOUZHENA 607 0.0017 (5/2968) 0 * Os_TE_842340 Os_TE_842328 Chr1 32933731 32933730 - COPIA2-LTR_OS 6433 0.0003 (1/2984) 0 * * Os_TE_842302 Chr1 32916616 32916617 - JOUZHENA 607 0.0003 (1/2976) 0 * Os_TE_842301 Os_TE_842301 Chr1 32916609 32916608 + JOUZHENA 607 0.0003 (1/2978) 0 * Os_TE_842302 Os_TE_842267 Chr1 32885535 32885534 - STOWAWAY44_OS 240 0.0003 (1/2972) 0 * Os_TE_842266 Os_TE_842266 Chr1 32885532 32885533 + STOWAWAY44_OS 240 0.0003 (1/2975) 0 * Os_TE_842267 Os_TE_842264 Chr1 32884716 32884717 + COPI2_LTR 4733 0.0007 (2/2994) 0 * Os_TE_842263 Os_TE_842263 Chr1 32884712 32884711 - COPI2_LTR 4733 0.0007 (2/2996) 0 * Os_TE_842264 Os_TE_842262 Chr1 32884190 32884191 - COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * * Os_TE_842202 Chr1 32861436 32861437 + RIREX_LTR 8828 0.0047 (14/2997) 0 * Os_TE_842201 Os_TE_842201 Chr1 32861432 32861431 - RIREX_LTR 8828 0.0047 (14/2998) 0 * Os_TE_842202 Os_TE_842200 Chr1 32860958 32860959 - ORSiTETNOOT00134 607 0.0003 (1/2989) 0 * Os_TE_842199 Os_TE_842199 Chr1 32860951 32860950 + TWIF 586 0.0003 (1/2991) 0 * Os_TE_842200 Os_TE_842196 Chr1 32860656 32860655 - RIREX_LTR 8828 0.0057 (17/2979) 0 * * Os_TE_842179 Chr1 32851237 32850976 - INDITTO 263 0.3399 (1015/2986) 1 Intact Os_TE_842178 Os_TE_842178 Chr1 32850976 32851237 + INDITTO 263 0.3381 (1011/2990) 1 Intact Os_TE_842179 Os_TE_842143 Chr1 32825233 32825232 + TRUNCATOR 2918 0.0019 (5/2668) 0 * * Os_TE_842134 Chr1 32817088 32817089 + SC-8_LTR 4951 0.0003 (1/2970) 0 * * Os_TE_842127 Chr1 32809828 32809829 + NDNA1TNA_OS 334 0.0017 (5/2988) 0 * Os_TE_842126 Os_TE_842126 Chr1 32809826 32809825 - NDNA1TNA_OS 334 0.0017 (5/2991) 0 * Os_TE_842127 Os_TE_842103 Chr1 32804103 32804102 - OsSN3 183 0.0029 (7/2446) 0 * * Os_TE_842100 Chr1 32803536 32803537 - ORSgTEMT00600085 364 0.0004 (1/2750) 0 * Os_TE_842099 Os_TE_842099 Chr1 32803534 32803533 + ORSgTEMT00600502 360 0.0004 (1/2786) 0 * Os_TE_842100 Os_TE_842098 Chr1 32803220 32803219 - TYPEM 227 0.0003 (1/2901) 0 * Os_TE_842097 Os_TE_842097 Chr1 32803219 32803220 - ORSgTEMT02400246 177 0.0004 (1/2835) 0 * Os_TE_842098 Os_TE_842089 Chr1 32802071 32802072 + RIREX_LTR 8828 0.0003 (1/2892) 0 * Os_TE_842088 Os_TE_842088 Chr1 32802067 32802066 - RIREX_LTR 8828 0.0003 (1/2889) 0 * Os_TE_842089 Os_TE_842079 Chr1 32799492 32799493 + ENSPM4_OS 11610 0.0030 (9/2996) 0 * * Os_TE_842055 Chr1 32793164 32793165 - RIREX_LTR 8828 0.0003 (1/2994) 0 * Os_TE_842054 Os_TE_842054 Chr1 32793160 32793159 + RIREX_LTR 8828 0.0003 (1/2994) 0 * Os_TE_842055 Os_TE_842052 Chr1 32789697 32789698 + TYPEU4 402 0.0013 (4/2993) 0 * Os_TE_842051 Os_TE_842051 Chr1 32789689 32789688 - TYPEU1 380 0.0017 (5/2992) 0 * Os_TE_842052 Os_TE_842050 Chr1 32788602 32788603 - COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_842049 Os_TE_842049 Chr1 32788598 32788597 + COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_842050 Os_TE_842043 Chr1 32786081 32786082 - NDNA1TNA_OS 334 0.0013 (4/2989) 0 * Os_TE_842042 Os_TE_842042 Chr1 32786079 32786078 + NDNA1TNA_OS 334 0.0017 (5/2988) 0 * Os_TE_842043 Os_TE_842014 Chr1 32767483 32767484 - ORSgTEMT00400006 152 0.7964 (2366/2971) 0 * * Os_TE_842012 Chr1 32767122 32767123 + STOWAWAY44_OS 240 0.0003 (1/2983) 0 * * Os_TE_842007 Chr1 32760317 32760316 + SC-8_LTR 4951 0.0003 (1/2979) 0 * Os_TE_842006 Os_TE_842006 Chr1 32760312 32760313 - SC-8_LTR 4951 0.0003 (1/2975) 0 * Os_TE_842007 Os_TE_841988 Chr1 32756031 32752261 + RETROSAT4_LTR 13504 0.1976 (585/2961) 1 Solo_LTR Os_TE_841986 Os_TE_841986 Chr1 32752261 32756031 - SZ-35LTR 3853 0.2081 (619/2974) 1 Intact Os_TE_841988 Os_TE_841974 Chr1 32744096 32744095 + DS-RICE2N 613 0.7961 (2350/2952) 0 * Os_TE_841973 Os_TE_841973 Chr1 32744095 32744096 - DS-RICE2N 613 0.6975 (1409/2020) 0 * Os_TE_841974 Os_TE_841961 Chr1 32739992 32739991 - OSTE33 1012 0.7866 (2245/2854) 0 * * Os_TE_841959 Chr1 32735904 32735903 - HATOS1 3488 0.0175 (11/627) 0 * * Os_TE_841940 Chr1 32723099 32723510 - ORSiTERTOOT00308 5023 0.2111 (606/2871) 1 Intact * Os_TE_841917 Chr1 32715491 32715492 + COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_841916 Os_TE_841916 Chr1 32715487 32715486 - COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_841917 Os_TE_841910 Chr1 32713204 32713205 - AMYLTP 383 0.0003 (1/2974) 0 * Os_TE_841909 Os_TE_841909 Chr1 32713197 32713196 + AMYLTP 383 0.0003 (1/2955) 0 * Os_TE_841910 Os_TE_841908 Chr1 32713164 32713165 + STOWAWAY51_OS 246 0.0003 (1/2987) 0 * * Os_TE_841891 Chr1 32704135 32704136 + DS-RICE2N 613 0.0003 (1/2980) 0 * Os_TE_841890 Os_TE_841890 Chr1 32704128 32704127 - DS-RICE2N 613 0.0003 (1/2981) 0 * Os_TE_841891 Os_TE_841860 Chr1 32683889 32683888 - STOWAWAY51_OS 246 0.1717 (491/2860) 0 * Os_TE_841859 Os_TE_841859 Chr1 32683886 32683887 - STOWAWAY51_OS 246 0.1580 (444/2811) 0 * Os_TE_841860 Os_TE_841848 Chr1 32681422 32681423 + TWIF 586 0.0004 (1/2650) 0 * Os_TE_841847 Os_TE_841847 Chr1 32681415 32681414 - ORSiTETNOOT00134 607 0.0004 (1/2636) 0 * Os_TE_841848 Os_TE_841844 Chr1 32678712 32678713 - SC-3_LTR 5748 0.0003 (1/2991) 0 * Os_TE_841843 Os_TE_841843 Chr1 32678708 32678707 + ORSiTERTOOT00296 5553 0.0003 (1/2990) 0 * Os_TE_841844 Os_TE_841836 Chr1 32676172 32676173 - HARB-N1_OS 2589 0.0017 (5/2986) 0 * Os_TE_841835 Os_TE_841835 Chr1 32676170 32676169 + HARB-N1_OS 2589 0.0017 (5/2988) 0 * Os_TE_841836 Os_TE_841833 Chr1 32672172 32672173 - SC-8_LTR 4951 0.0003 (1/2995) 0 * Os_TE_841832 Os_TE_841832 Chr1 32672168 32672167 + SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_841833 Os_TE_841829 Chr1 32669227 32668894 - NDNA1TNA_OS 334 0.0433 (105/2427) 1 Intact Os_TE_841828 Os_TE_841828 Chr1 32668894 32669227 + NDNA1TNA_OS 334 0.0438 (118/2691) 1 Intact Os_TE_841829 Os_TE_841741 Chr1 32614581 32614582 + OSTONOR1_LTR 6440 0.0024 (7/2975) 0 * Os_TE_841740 Os_TE_841740 Chr1 32614577 32614576 - ORSiTERT00100062 5674 0.0024 (7/2974) 0 * Os_TE_841741 Os_TE_841732 Chr1 32607687 32607688 - RETRO2A_LTR 12895 0.0435 (130/2991) 0 * Os_TE_841731 Os_TE_841731 Chr1 32607683 32607682 + RETRO1_LTR 8314 0.0422 (126/2988) 0 * Os_TE_841732 Os_TE_841718 Chr1 32602040 32603252 + SZLTR 1249 0.0536 (124/2315) 1 Intact * Os_TE_841713 Chr1 32598390 32598389 + ORSgTEMT01601591 242 0.0003 (1/2992) 0 * * Os_TE_841697 Chr1 32586234 32586233 - F569 228 0.0004 (1/2706) 0 * * Os_TE_841653 Chr1 32570386 32571489 - RETRO2_LTR 12874 0.1262 (330/2615) 1 Solo_LTR * Os_TE_841617 Chr1 32547738 32547739 - ORSgTETNOOT01337 247 0.7473 (2153/2881) 0 * * Os_TE_841615 Chr1 32547709 32547710 - ORSgTETNOOT00790 253 0.0007 (2/2854) 0 * * Os_TE_841608 Chr1 32544423 32544422 + ORSgTETNOOT00032 218 0.0438 (131/2993) 0 * * Os_TE_841592 Chr1 32541784 32541783 + ORSgTEMT01700715 134 0.7880 (2353/2986) 0.1 * * Os_TE_841588 Chr1 32540119 32540120 - SC-3_LTR 5748 0.0007 (2/2994) 0 * Os_TE_841587 Os_TE_841587 Chr1 32540115 32540114 + ORSiTERTOOT00296 5553 0.0007 (2/2992) 0 * Os_TE_841588 Os_TE_841536 Chr1 32525201 32525200 - ORSgTEMT02400179 221 0.0057 (17/2991) 0 * * Os_TE_841535 Chr1 32524842 32524843 + OSTE33 1012 0.0013 (4/2994) 0 * * Os_TE_841533 Chr1 32524697 32524698 + ORSgTETNOOT01522 239 0.0003 (1/2988) 0 * Os_TE_841532 Os_TE_841532 Chr1 32524695 32524694 + ORSgTETNOOT00908 242 0.0003 (1/2937) 0 * Os_TE_841533 Os_TE_841498 Chr1 32517179 32517397 - ORSgTEMT02400183 225 0.4699 (336/715) 1 Intact * Os_TE_841424 Chr1 32491181 32491182 - COPIA2-LTR_OS 6433 0.0022 (6/2667) 0 * * Os_TE_841390 Chr1 32482316 32482317 - STOWAWAY12_OS 312 0.0003 (1/2986) 0 * * Os_TE_841385 Chr1 32481876 32481877 - ORSgTEMT00502391 125 0.0004 (1/2833) 0 * * Os_TE_841384 Chr1 32481779 32481778 + TRUNCATOR 2918 0.0059 (17/2902) 0 * Os_TE_841383 Os_TE_841383 Chr1 32481778 32481779 - TRUNCATOR 2918 0.0045 (13/2882) 0 * Os_TE_841384 Os_TE_841376 Chr1 32480596 32480869 - SUSU 279 0.8887 (2620/2948) 1 Intact * Os_TE_841374 Chr1 32480430 32480429 - ORSgTEMT02600002 356 0.7621 (2227/2922) 0 * * Os_TE_841371 Chr1 32480141 32480142 - MPING 430 0.0003 (1/2969) 0 * * Os_TE_841332 Chr1 32461296 32461295 + ORSgTEMT01601591 242 0.0007 (2/2977) 0 * * Os_TE_841327 Chr1 32458944 32458943 - RIREX_LTR 8828 0.0017 (5/2992) 0 * * Os_TE_841325 Chr1 32458225 32458226 - ORSgTEMT00700002 381 0.0003 (1/2991) 0 * Os_TE_841324 Os_TE_841324 Chr1 32458224 32458223 + MUDRN5_OS 374 0.0003 (1/2994) 0 * Os_TE_841325 Os_TE_841316 Chr1 32455980 32455979 - ORSgTETNOOT02044 254 0.0003 (1/2992) 0 * * Os_TE_841311 Chr1 32451662 32451663 - COPI2_LTR 4733 0.0003 (1/2988) 0 * Os_TE_841310 Os_TE_841310 Chr1 32451658 32451657 + COPI2_LTR 4733 0.0003 (1/2987) 0 * Os_TE_841311 Os_TE_841308 Chr1 32450366 32450367 + ORSgTETNOOT00908 242 0.7812 (2332/2985) 0 * Os_TE_841307 Os_TE_841307 Chr1 32450365 32450364 + ORSgTETNOOT02019 240 0.7752 (2290/2954) 0 * Os_TE_841308 Os_TE_841298 Chr1 32447358 32447359 + HARB-1_OS 5166 0.0003 (1/2985) 0 * * Os_TE_841274 Chr1 32436617 32436618 - SC-3_LTR 5748 0.0003 (1/2992) 0 * Os_TE_841273 Os_TE_841273 Chr1 32436613 32436612 + ORSiTERTOOT00296 5553 0.0003 (1/2993) 0 * Os_TE_841274 Os_TE_841252 Chr1 32430916 32430915 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * * Os_TE_841246 Chr1 32429801 32429800 - TYPEM 227 0.6134 (1823/2972) 0 * Os_TE_841245 Os_TE_841245 Chr1 32429800 32429801 - TYPEM 227 0.6247 (1868/2990) 0 * Os_TE_841246 Os_TE_841244 Chr1 32429257 32429258 + ORSiTERTOOT00441 4741 0.0003 (1/2997) 0 * Os_TE_841243 Os_TE_841243 Chr1 32429253 32429252 - ORSiTERTOOT00441 4741 0.0003 (1/2998) 0 * Os_TE_841244 Os_TE_841242 Chr1 32428904 32428905 + INDITTO 263 0.0007 (2/2994) 0 * Os_TE_841241 Os_TE_841241 Chr1 32428902 32428901 - INDITTO 263 0.0007 (2/2991) 0 * Os_TE_841242 Os_TE_841189 Chr1 32389824 32389825 - OLO24 345 0.0003 (1/2993) 0 * Os_TE_841188 Os_TE_841188 Chr1 32389822 32389821 + OLO24 345 0.0003 (1/2993) 0 * Os_TE_841189 Os_TE_841181 Chr1 32388390 32388391 - COPIA2-LTR_OS 6433 0.0014 (3/2192) 0 * * Os_TE_841145 Chr1 32365046 32365047 + RIREX_LTR 8828 0.0004 (1/2845) 0 * Os_TE_841144 Os_TE_841144 Chr1 32365042 32365041 - RIREX_LTR 8828 0.0004 (1/2843) 0 * Os_TE_841145 Os_TE_841134 Chr1 32362865 32362866 - ORSgTETNOOT02417 265 0.6595 (1941/2943) 0 * Os_TE_841133 Os_TE_841133 Chr1 32362863 32362862 - INDITTO 263 0.6372 (1800/2825) 0 * Os_TE_841134 Os_TE_841130 Chr1 32362009 32362010 + RIREX_LTR 8828 0.0003 (1/2974) 0 * Os_TE_841129 Os_TE_841129 Chr1 32362005 32362004 - RIREX_LTR 8828 0.0003 (1/2978) 0 * Os_TE_841130 Os_TE_841096 Chr1 32339174 32339175 + RIREX_LTR 8828 0.0010 (3/2987) 0 * Os_TE_841095 Os_TE_841095 Chr1 32339170 32339169 - RIREX_LTR 8828 0.0013 (4/2980) 0 * Os_TE_841096 Os_TE_841094 Chr1 32336821 32336820 + ORSgTEMT00700017 386 0.0003 (1/2987) 0 * * Os_TE_841049 Chr1 32309095 32309094 + COPI1_LTR 4721 0.0017 (5/2996) 0 * * Os_TE_841046 Chr1 32308985 32308984 - RIREX_LTR 8828 0.1577 (468/2967) 0 * * Os_TE_841043 Chr1 32307380 32307379 + EXPLORER 210 0.8175 (2289/2800) 0 * * Os_TE_841022 Chr1 32295021 32295022 - COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_841021 Os_TE_841021 Chr1 32295017 32295016 + COPIA2-LTR_OS 6433 0.0003 (1/2986) 0 * Os_TE_841022 Os_TE_841007 Chr1 32291790 32291791 + COPI2_LTR 4733 0.0003 (1/2964) 0 * * Os_TE_840991 Chr1 32285729 32285730 - TRUNCATOR2_LTR 2904 0.0003 (1/2998) 0 * Os_TE_840990 Os_TE_840990 Chr1 32285725 32285724 + ORSiTERTOOT00028 8600 0.0004 (1/2515) 0 * Os_TE_840991 Os_TE_840970 Chr1 32283268 32279950 - GYPSY-A_LTR 8951 0.1558 (454/2914) 1 Solo_LTR * Os_TE_840953 Chr1 32275676 32275677 - INDITTO 263 0.4911 (689/1403) 0 * Os_TE_840952 Os_TE_840952 Chr1 32275674 32275673 - ORSgTETNOOT00534 256 0.7666 (2257/2944) 0 * Os_TE_840953 Os_TE_840930 Chr1 32265350 32265351 - SUSU 279 0.8295 (2476/2985) 0 * * Os_TE_840923 Chr1 32263820 32263074 - Cassandra_OS-LTR 764 0.3305 (514/1555) 1 Intact * Os_TE_840905 Chr1 32260015 32260014 - TYPEM 227 0.0003 (1/2996) 0 * * Os_TE_840887 Chr1 32250086 32250087 + NDNA1TNA_OS 334 0.0010 (3/2996) 0 * Os_TE_840886 Os_TE_840886 Chr1 32250084 32250083 - NDNA1TNA_OS 334 0.0010 (3/2995) 0 * Os_TE_840887 Os_TE_840881 Chr1 32246875 32246874 + SC-8_LTR 4951 0.0007 (2/2982) 0 * * Os_TE_840874 Chr1 32239140 32239139 - MuDR3_OS 8604 0.0003 (1/2913) 0 * Os_TE_840873 Os_TE_840873 Chr1 32239069 32239070 + MuDR3_OS 8604 0.0003 (1/2961) 0 * Os_TE_840874 Os_TE_840863 Chr1 32235879 32235878 + ORSgTEMT01601122 212 0.0293 (84/2864) 0 * * Os_TE_840851 Chr1 32232716 32232717 - MERMITED 1572 0.0011 (3/2718) 0 * Os_TE_840850 Os_TE_840850 Chr1 32232713 32232712 - MERMITED 1572 0.0004 (1/2739) 0 * Os_TE_840851 Os_TE_840814 Chr1 32205107 32216712 + RETRO2_LTR 12874 0.1393 (414/2971) 1 Intact * Os_TE_840806 Chr1 32200890 32200628 - ORSgTETNOOT01337 247 0.1405 (421/2996) 1 Intact Os_TE_840805 Os_TE_840805 Chr1 32200628 32200890 + ORSgTETNOOT00221 261 0.1409 (422/2996) 1 Intact Os_TE_840806 Os_TE_840804 Chr1 32200414 32200415 + TWIF 586 0.0003 (1/2993) 0 * Os_TE_840803 Os_TE_840803 Chr1 32200407 32200406 - ORSiTETNOOT00134 607 0.0003 (1/2994) 0 * Os_TE_840804 Os_TE_840787 Chr1 32198228 32198229 - TYPEU1 380 0.0017 (5/2996) 0 * Os_TE_840786 Os_TE_840786 Chr1 32198220 32198219 + TYPEU4 402 0.0013 (4/2997) 0 * Os_TE_840787 Os_TE_840753 Chr1 32175451 32175450 - TRUNCATOR 2918 0.0031 (9/2912) 0 * Os_TE_840752 Os_TE_840752 Chr1 32175450 32175451 + TRUNCATOR 2918 0.0031 (9/2929) 0 * Os_TE_840753 Os_TE_840662 Chr1 32138581 32138580 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * * Os_TE_840661 Chr1 32137275 32137276 + OSTE18 129 0.0017 (5/2989) 0 * * Os_TE_840639 Chr1 32124986 32124987 + SC-8_LTR 4951 0.0003 (1/2998) 0 * * Os_TE_840573 Chr1 32108545 32108546 + ORSgTEMT01601591 242 0.0003 (1/2986) 0 * * Os_TE_840534 Chr1 32089494 32089495 + ORSgTETNOOT00908 242 0.0003 (1/2977) 0 * * Os_TE_840489 Chr1 32070807 32063953 - RIRE5-LTR_OS 6427 0.1514 (454/2998) 1 Intact Os_TE_840485 Os_TE_840485 Chr1 32063953 32070391 - RIRE5-LTR_OS 6427 0.1514 (454/2998) 1 Intact Os_TE_840489 Os_TE_840484 Chr1 32063365 32063366 - DASIA-2 1198 0.0314 (94/2991) 0 * Os_TE_840483 Os_TE_840483 Chr1 32063357 32063356 + DASIA-2 1198 0.0311 (93/2991) 0 * Os_TE_840484 Os_TE_840481 Chr1 32060115 32060116 + SC-8_LTR 4951 0.0003 (1/2994) 0 * Os_TE_840480 Os_TE_840480 Chr1 32060111 32060110 - SC-8_LTR 4951 0.0003 (1/2995) 0 * Os_TE_840481 Os_TE_840471 Chr1 32055458 32055459 - DS-RICE2N 613 0.0320 (94/2935) 0 * Os_TE_840470 Os_TE_840470 Chr1 32055451 32055450 + DS-RICE4N 715 0.0304 (89/2931) 0 * Os_TE_840471 Os_TE_840436 Chr1 32044207 32044208 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * * Os_TE_840427 Chr1 32039982 32039983 + COPI2_LTR 4733 0.0003 (1/2999) 0 * Os_TE_840426 Os_TE_840426 Chr1 32039978 32039977 - COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_840427 Os_TE_840415 Chr1 32029220 32029221 - ORSiTERTOOT00402 2660 0.0003 (1/2992) 0 * Os_TE_840414 Os_TE_840414 Chr1 32029216 32029215 + ORSiTERTOOT00402 2660 0.0003 (1/2992) 0 * Os_TE_840415 Os_TE_840406 Chr1 32025185 32025184 - RETRO1_LTR 8314 0.0239 (71/2973) 0 * * Os_TE_840405 Chr1 32024807 32024808 + ORSiTERTOOT00028 8600 0.0221 (66/2990) 0 * Os_TE_840404 Os_TE_840404 Chr1 32024803 32024802 - TRUNCATOR2_LTR 2904 0.0241 (72/2993) 0 * Os_TE_840405 Os_TE_840398 Chr1 32022613 32022614 - ORSiTETNOOT00134 607 0.0003 (1/2961) 0 * Os_TE_840397 Os_TE_840397 Chr1 32022606 32022605 + TWIF 586 0.0003 (1/2959) 0 * Os_TE_840398 Os_TE_840368 Chr1 32002362 32002361 + ORSgTEMT01601934 207 0.0003 (1/2978) 0 * * Os_TE_840367 Chr1 32000589 32000590 - SC-8_LTR 4951 0.0003 (1/2988) 0 * Os_TE_840366 Os_TE_840366 Chr1 32000585 32000584 + SC-8_LTR 4951 0.0003 (1/2986) 0 * Os_TE_840367 Os_TE_840356 Chr1 31996495 31996496 - NDNA1TNA_OS 334 0.0294 (88/2991) 0 * Os_TE_840355 Os_TE_840355 Chr1 31996493 31996492 + NDNA1TNA_OS 334 0.0287 (86/2996) 0 * Os_TE_840356 Os_TE_840331 Chr1 31981819 31981820 - RIREX_LTR 8828 0.0007 (2/2988) 0 * Os_TE_840330 Os_TE_840330 Chr1 31981815 31981814 + RIREX_LTR 8828 0.0007 (2/2987) 0 * Os_TE_840331 Os_TE_840328 Chr1 31981327 31981328 - HARB-1_OS 5166 0.0003 (1/2967) 0 * Os_TE_840327 Os_TE_840327 Chr1 31981325 31981324 + HARB-1_OS 5166 0.0003 (1/2957) 0 * Os_TE_840328 Os_TE_840322 Chr1 31975831 31975830 - RIREX_LTR 8828 0.0007 (2/2942) 0 * * Os_TE_840321 Chr1 31975801 31975802 - SZ-22_LTR 4403 0.0034 (10/2976) 0 * * Os_TE_840311 Chr1 31972413 31972414 - SC-8_LTR 4951 0.0104 (31/2994) 0 * Os_TE_840310 Os_TE_840310 Chr1 31972409 31972408 + SC-8_LTR 4951 0.0104 (31/2993) 0 * Os_TE_840311 Os_TE_840296 Chr1 31967697 31967696 - RIREX_LTR 8828 0.0005 (1/2156) 0 * * Os_TE_840263 Chr1 31949779 31949780 - COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_840262 Os_TE_840262 Chr1 31949775 31949774 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_840263 Os_TE_840253 Chr1 31942279 31942280 - TELIA 141 0.0003 (1/2989) 0 * Os_TE_840252 Os_TE_840252 Chr1 31942271 31942270 + TELIA 141 0.0003 (1/2990) 0 * Os_TE_840253 Os_TE_840247 Chr1 31939361 31939362 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_840246 Os_TE_840246 Chr1 31939357 31939356 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_840247 Os_TE_840239 Chr1 31931124 31935146 + RETROSAT4_LTR 13504 0.2080 (608/2923) 1 Solo_LTR * Os_TE_840231 Chr1 31925270 31925271 - ORSgTERT00201216 11284 0.4139 (1236/2986) 0 * Os_TE_840230 Os_TE_840230 Chr1 31925266 31925265 - RIRE2_LTR 11306 0.4184 (1252/2992) 0 * Os_TE_840231 Os_TE_840222 Chr1 31919304 31919305 + ORSgTETNOOT00908 242 0.0003 (1/2978) 0 * * Os_TE_840221 Chr1 31919143 31919144 - MPING 430 0.0003 (1/2972) 0 * * Os_TE_840205 Chr1 31908370 31908369 + TRUNCATOR 2918 0.3466 (1037/2992) 0 * * Os_TE_840194 Chr1 31905845 31905846 - RIREX_LTR 8828 0.0003 (1/2998) 0 * Os_TE_840193 Os_TE_840193 Chr1 31905841 31905840 + RIREX_LTR 8828 0.0003 (1/2997) 0 * Os_TE_840194 Os_TE_840181 Chr1 31900139 31900138 - MuDR3_OS 8604 0.7467 (2184/2925) 0 * * Os_TE_840178 Chr1 31897074 31897073 + DS-RICE4N 715 0.0121 (36/2972) 0 * * Os_TE_840167 Chr1 31891839 31891840 + COPI2_LTR 4733 0.0003 (1/2997) 0 * Os_TE_840166 Os_TE_840166 Chr1 31891835 31891834 - COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_840167 Os_TE_840160 Chr1 31887842 31887843 + ORSiTERTOOT00296 5553 0.0007 (2/2995) 0 * Os_TE_840159 Os_TE_840159 Chr1 31887838 31887837 - SC-3_LTR 5748 0.0007 (2/2996) 0 * Os_TE_840160 Os_TE_840123 Chr1 31871302 31871301 - STOWAWAY51_OS 246 0.0003 (1/2990) 0 * Os_TE_840122 Os_TE_840122 Chr1 31871296 31871297 + STOWAWAY51_OS 246 0.0003 (1/2995) 0 * Os_TE_840123 Os_TE_840121 Chr1 31870856 31870857 + TRUNCATOR2_LTR 2904 0.0224 (67/2995) 0 * Os_TE_840120 Os_TE_840120 Chr1 31870852 31870851 - TRUNCATOR2_LTR 2904 0.0234 (70/2996) 0 * Os_TE_840121 Os_TE_840116 Chr1 31870143 31870144 - RETRO2_LTR 12874 0.0003 (1/2965) 0 * * Os_TE_840081 Chr1 31860013 31860014 - AMYLTP 383 0.0017 (5/2990) 0 * Os_TE_840080 Os_TE_840080 Chr1 31860005 31860004 + AMYLTP 383 0.0017 (5/2991) 0 * Os_TE_840081 Os_TE_840073 Chr1 31858750 31858749 + ORSgTEMT00101341 314 0.3156 (938/2972) 0 * Os_TE_840072 Os_TE_840072 Chr1 31858743 31858744 + ORSgTEMT00100531 325 0.3459 (972/2810) 0 * Os_TE_840073 Os_TE_840070 Chr1 31857860 31857861 - MPING 430 0.0003 (1/2977) 0 * Os_TE_840069 Os_TE_840069 Chr1 31857858 31857857 + MPING 430 0.0003 (1/2972) 0 * Os_TE_840070 Os_TE_840067 Chr1 31857298 31857299 - COPIA2-LTR_OS 6433 0.0007 (2/2776) 0 * Os_TE_840066 Os_TE_840066 Chr1 31857294 31857293 + COPIA2-LTR_OS 6433 0.0007 (2/2777) 0 * Os_TE_840067 Os_TE_840065 Chr1 31856069 31856070 - ORSgTEMT01400014 209 0.0020 (6/2979) 0 * * Os_TE_840053 Chr1 31853507 31853506 + ORSgTEMT00900258 259 0.0017 (5/2973) 0 * Os_TE_840052 Os_TE_840052 Chr1 31853503 31853504 - DITAILA 257 0.0017 (5/2976) 0 * Os_TE_840053 Os_TE_840030 Chr1 31850586 31850585 + ORSgTETNOOT00012 241 0.0003 (1/2997) 0 * * Os_TE_840004 Chr1 31842855 31842856 + MPING 430 0.0003 (1/2997) 0 * Os_TE_840003 Os_TE_840003 Chr1 31842853 31842852 - MPING 430 0.0003 (1/2995) 0 * Os_TE_840004 Os_TE_840001 Chr1 31842086 31842087 - TYPEM 227 0.0007 (2/2908) 0 * * Os_TE_839999 Chr1 31841791 31841792 - COPI2_LTR 4733 0.0003 (1/2999) 0 * Os_TE_839998 Os_TE_839998 Chr1 31841787 31841786 + COPI2_LTR 4733 0.0003 (1/2999) 0 * Os_TE_839999 Os_TE_839984 Chr1 31833530 31833529 + GYPSY-A_LTR 8951 0.0003 (1/2971) 0 * * Os_TE_839977 Chr1 31828415 31828416 + SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_839976 Os_TE_839976 Chr1 31828411 31828410 - SC-8_LTR 4951 0.0003 (1/2994) 0 * Os_TE_839977 Os_TE_839947 Chr1 31817539 31817540 - RIREX_LTR 8828 0.0003 (1/2948) 0 * Os_TE_839946 Os_TE_839946 Chr1 31817535 31817534 + RIREX_LTR 8828 0.0003 (1/2943) 0 * Os_TE_839947 Os_TE_839943 Chr1 31816702 31816703 + TWIFB1 3737 0.0003 (1/2994) 0 * * Os_TE_839939 Chr1 31814732 31814733 + MERMITED 1572 0.0452 (134/2965) 0 * Os_TE_839938 Os_TE_839938 Chr1 31814730 31814729 + MERMITED 1572 0.0463 (138/2978) 0 * Os_TE_839939 Os_TE_839889 Chr1 31792043 31788216 + RETROSAT4_LTR 13504 0.2533 (742/2929) 1 Solo_LTR Os_TE_839886 Os_TE_839886 Chr1 31788219 31792043 - RETROSAT4_LTR 13504 0.2737 (816/2981) 1 Solo_LTR Os_TE_839889 Os_TE_839883 Chr1 31787080 31787081 + SZ-67LTR 1540 0.0248 (74/2989) 0 * Os_TE_839882 Os_TE_839882 Chr1 31787076 31787075 - RETROSAT5_LTR 13878 0.0244 (73/2989) 0 * Os_TE_839883 Os_TE_839876 Chr1 31779864 31779865 - RIRE2_LTR 11306 0.0003 (1/2867) 0 * Os_TE_839875 Os_TE_839875 Chr1 31779860 31779859 + RIRE2_LTR 11306 0.0003 (1/2969) 0 * Os_TE_839876 Os_TE_839869 Chr1 31778748 31778747 - RIREX_LTR 8828 0.0007 (2/2967) 0 * * Os_TE_839833 Chr1 31761174 31761175 + OSTE33 1012 0.2678 (789/2946) 0 * Os_TE_839832 Os_TE_839832 Chr1 31761165 31761164 + OSTE33 1012 0.2830 (846/2989) 0 * Os_TE_839833 Os_TE_839816 Chr1 31756141 31756142 + SZ-55_LTR 10318 0.0010 (3/2999) 0 * Os_TE_839815 Os_TE_839815 Chr1 31756137 31756136 - SZ-55_LTR 10318 0.0010 (3/2999) 0 * Os_TE_839816 Os_TE_839781 Chr1 31744094 31744095 + ORSgTERT00201027 424 0.0004 (1/2694) 0 * * Os_TE_839780 Chr1 31743053 31743054 + ORSgTETNOOT00032 218 0.0303 (86/2838) 0 * * Os_TE_839736 Chr1 31727367 31727368 + MPING 430 0.0007 (2/2995) 0 * Os_TE_839735 Os_TE_839735 Chr1 31727365 31727364 - MPING 430 0.0007 (2/2996) 0 * Os_TE_839736 Os_TE_839718 Chr1 31722400 31722401 + SZ-37_LTR 12001 0.0019 (4/2064) 0 * Os_TE_839717 Os_TE_839717 Chr1 31722396 31722395 - SZ-37_LTR 12001 0.0025 (5/1987) 0 * Os_TE_839718 Os_TE_839698 Chr1 31713831 31713832 + RIREX_LTR 8828 0.0003 (1/2993) 0 * Os_TE_839697 Os_TE_839697 Chr1 31713827 31713826 - RIREX_LTR 8828 0.0003 (1/2994) 0 * Os_TE_839698 Os_TE_839690 Chr1 31708495 31708494 - COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * * Os_TE_839683 Chr1 31707007 31707008 - COPI2_LTR 4733 0.0007 (2/2998) 0 * Os_TE_839682 Os_TE_839682 Chr1 31707003 31707002 + COPI2_LTR 4733 0.0007 (2/2999) 0 * Os_TE_839683 Os_TE_839681 Chr1 31706903 31706904 - TYPEU1 380 0.0667 (199/2983) 0 * Os_TE_839680 Os_TE_839680 Chr1 31706895 31706894 + TYPEU4 402 0.0673 (201/2987) 0 * Os_TE_839681 Os_TE_839671 Chr1 31702379 31702378 + SEVERIN-2 1952 0.1823 (540/2962) 0 * * Os_TE_839661 Chr1 31695675 31695676 + CACTA-H 1152 0.1872 (528/2820) 0 * Os_TE_839660 Os_TE_839660 Chr1 31695673 31695672 - CACTA-H 1152 0.1863 (525/2818) 0 * Os_TE_839661 Os_TE_839659 Chr1 31694659 31694660 + COPI2_LTR 4733 0.0003 (1/2997) 0 * Os_TE_839658 Os_TE_839658 Chr1 31694655 31694654 - COPI2_LTR 4733 0.0003 (1/2995) 0 * Os_TE_839659 Os_TE_839655 Chr1 31692496 31692497 - COPI2_LTR 4733 0.0353 (19/539) -1 * * Os_TE_839604 Chr1 31667427 31667661 + ORSgTETNOOT00908 242 0.5080 (1520/2992) 1 Intact * Os_TE_839603 Chr1 31665601 31665602 + COPIA2-LTR_OS 6433 0.0007 (2/2992) 0 * Os_TE_839602 Os_TE_839602 Chr1 31665597 31665596 - COPIA2-LTR_OS 6433 0.0007 (2/2993) 0 * Os_TE_839603 Os_TE_839549 Chr1 31640593 31640594 + MPING 430 0.0003 (1/2878) 0 * * Os_TE_839535 Chr1 31633371 31633372 - INDITTO 263 0.1019 (98/962) 0 * * Os_TE_839494 Chr1 31627517 31627518 + HELITRON2_OS 15167 0.0003 (1/2975) 0 * * Os_TE_839488 Chr1 31623458 31623459 + MPING 430 0.0564 (169/2997) 0 * Os_TE_839487 Os_TE_839487 Chr1 31623456 31623455 - MPING 430 0.0554 (166/2997) 0 * Os_TE_839488 Os_TE_839484 Chr1 31621700 31621701 - SC-8_LTR 4951 0.0003 (1/2998) 0 * Os_TE_839483 Os_TE_839483 Chr1 31621696 31621695 + SC-8_LTR 4951 0.0003 (1/2997) 0 * Os_TE_839484 Os_TE_839480 Chr1 31611573 31611574 + MuDR4_OS 7610 0.0313 (91/2909) 0 * Os_TE_839479 Os_TE_839479 Chr1 31611566 31611565 - MuDR4_OS 7610 0.0308 (88/2857) 0 * Os_TE_839480 Os_TE_839453 Chr1 31598396 31598395 - SUSU 279 0.6818 (2018/2960) 0 * * Os_TE_839429 Chr1 31583742 31583951 + ORSgTEMT01601122 212 0.2927 (867/2962) 1 Intact * Os_TE_839416 Chr1 31567493 31567492 - STOWAWAY51_OS 246 0.0070 (21/2981) 0 * Os_TE_839415 Os_TE_839415 Chr1 31567490 31567491 - STOWAWAY51_OS 246 0.0074 (22/2983) 0 * Os_TE_839416 Os_TE_839330 Chr1 31526041 31526042 - SC-3_LTR 5748 0.0003 (1/2991) 0 * Os_TE_839329 Os_TE_839329 Chr1 31526037 31526036 + ORSiTERTOOT00296 5553 0.0003 (1/2992) 0 * Os_TE_839330 Os_TE_839273 Chr1 31495784 31495785 + JINHUA 479 0.0005 (1/2134) 0 * * Os_TE_839261 Chr1 31491712 31491713 + AMYLTP 383 0.0135 (40/2955) 0 * Os_TE_839260 Os_TE_839260 Chr1 31491704 31491703 - AMYLTP 383 0.0139 (41/2957) 0 * Os_TE_839261 Os_TE_839224 Chr1 31472643 31460198 + RETRO2_LTR 12874 0.2948 (879/2982) 1 Intact * Os_TE_839206 Chr1 31454700 31454701 + ORSgTETNOOT01834 251 0.0135 (40/2953) 0 * Os_TE_839205 Os_TE_839205 Chr1 31454698 31454697 + ORSgTETNOOT01834 251 0.0132 (39/2951) 0 * Os_TE_839206 Os_TE_839186 Chr1 31433588 31433587 + ORSgTEMT00101674 340 0.0096 (28/2907) 0 * Os_TE_839185 Os_TE_839185 Chr1 31433573 31433574 + NDNA1TNA_OS 334 0.0101 (30/2966) 0 * Os_TE_839186 Os_TE_839178 Chr1 31430817 31430818 - ORSiTERT00200154 9386 0.3476 (1034/2975) 0 * Os_TE_839177 Os_TE_839177 Chr1 31430811 31430810 + TRUNCATOR 2918 0.3487 (1039/2980) 0 * Os_TE_839178 Os_TE_839165 Chr1 31429096 31429097 + COPIA2-LTR_OS 6433 0.0017 (5/2996) 0 * Os_TE_839164 Os_TE_839164 Chr1 31429092 31429091 - COPIA2-LTR_OS 6433 0.0017 (5/2997) 0 * Os_TE_839165 Os_TE_839162 Chr1 31428876 31428877 - ORSgTETNOOT02417 265 0.3203 (960/2997) 0 * Os_TE_839161 Os_TE_839161 Chr1 31428874 31428873 - INDITTO 263 0.3218 (965/2999) 0 * Os_TE_839162 Os_TE_839131 Chr1 31412399 31412400 - MPING 430 0.0003 (1/2987) 0 * Os_TE_839130 Os_TE_839130 Chr1 31412397 31412396 + MPING 430 0.0003 (1/2985) 0 * Os_TE_839131 Os_TE_839115 Chr1 31403663 31403662 + OSTE33 1012 0.0003 (1/2977) 0 * * Os_TE_839107 Chr1 31402052 31402051 - STOWAWAY51_OS 246 0.0003 (1/2980) 0 * * Os_TE_839093 Chr1 31393202 31393201 - CACTA-H 1152 0.5974 (1760/2946) 0 * Os_TE_839092 Os_TE_839092 Chr1 31393201 31393202 + CACTA-B 1103 0.5931 (1730/2917) 0 * Os_TE_839093 Os_TE_839032 Chr1 31358843 31358842 - INDITTO 263 0.0003 (1/2996) 0 * * Os_TE_839012 Chr1 31348208 31348209 - TRUNCATOR2_LTR 2904 0.0321 (96/2993) 0 * Os_TE_839011 Os_TE_839011 Chr1 31348204 31348203 + ORSiTERTOOT00028 8600 0.0321 (96/2991) 0 * Os_TE_839012 Os_TE_838974 Chr1 31328686 31328685 + ORSgTEMT01601591 242 0.0535 (159/2974) 0 * Os_TE_838973 Os_TE_838973 Chr1 31328680 31328681 + STOWAWAY51_OS 246 0.0556 (166/2985) 0 * Os_TE_838974 Os_TE_838968 Chr1 31325251 31325252 - ORSgTETN00200001 10994 0.0449 (134/2987) 0 * Os_TE_838967 Os_TE_838967 Chr1 31325249 31325248 + SPMLIKE 10989 0.0481 (144/2996) 0 * Os_TE_838968 Os_TE_838962 Chr1 31323204 31323205 - RIREX_LTR 8828 0.0003 (1/2944) 0 * Os_TE_838961 Os_TE_838961 Chr1 31323200 31323199 + RIREX_LTR 8828 0.0003 (1/2950) 0 * Os_TE_838962 Os_TE_838895 Chr1 31296095 31295861 + ORSgTEMT01601122 212 0.3553 (1045/2941) 1 Intact * Os_TE_838887 Chr1 31293298 31293297 - ORSiTETNOOT00107 906 0.0003 (1/2981) 0 * * Os_TE_838871 Chr1 31279637 31279638 - MPING 430 0.0003 (1/2936) 0 * Os_TE_838870 Os_TE_838870 Chr1 31279635 31279634 + MPING 430 0.0003 (1/2962) 0 * Os_TE_838871 Os_TE_838799 Chr1 31259331 31259330 + COPIA2-LTR_OS 6433 0.0003 (1/2986) 0 * * Os_TE_838765 Chr1 31244539 31244431 + SINE1OS 127 0.3487 (1044/2994) 1 Intact * Os_TE_838757 Chr1 31240530 31240531 + ORSgTETNOOT01930 140 0.0004 (1/2452) 0 * * Os_TE_838748 Chr1 31239063 31234276 - RETROFIT7_LTR 4788 0.3484 (1045/2999) 1 Intact Os_TE_838745 Os_TE_838745 Chr1 31234276 31239063 + RETROFIT7_LTR 4788 0.3486 (1045/2998) 1 Intact Os_TE_838748 Os_TE_838743 Chr1 31232287 31232288 - COPIA2-LTR_OS 6433 0.0003 (1/2986) 0 * * Os_TE_838734 Chr1 31230429 31230428 + COPI2_LTR 4733 0.0003 (1/2974) 0 * * Os_TE_838732 Chr1 31229734 31229733 + HELITRON7_OS 10153 0.0004 (1/2769) 0 * Os_TE_838731 Os_TE_838731 Chr1 31229730 31229731 - HELITRON7_OS 10153 0.0004 (1/2775) 0 * Os_TE_838732 Os_TE_838730 Chr1 31229345 31229346 - NDNA2TNA_OS 346 0.6626 (1978/2985) 0 * * Os_TE_838696 Chr1 31203422 31203423 + TWIFBIG 3567 0.0004 (1/2830) 0 * Os_TE_838695 Os_TE_838695 Chr1 31203415 31203414 - ORSiTETNOOT00216 3569 0.0003 (1/2926) 0 * Os_TE_838696 Os_TE_838680 Chr1 31197523 31197524 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * * Os_TE_838654 Chr1 31180106 31180105 - TYPEM 227 0.1194 (355/2972) 0 * Os_TE_838653 Os_TE_838653 Chr1 31180105 31180106 - ORSgTEMT02400246 177 0.1181 (351/2972) 0 * Os_TE_838654 Os_TE_838604 Chr1 31154952 31154953 - COPIA2-LTR_OS 6433 0.0038 (11/2933) 0 * Os_TE_838603 Os_TE_838603 Chr1 31154948 31154947 + COPIA2-LTR_OS 6433 0.0034 (10/2940) 0 * Os_TE_838604 Os_TE_838596 Chr1 31151884 31138210 + SZ-52_LTR 13107 0.3493 (1047/2997) 1 Intact Os_TE_838593 Os_TE_838593 Chr1 31138210 31151884 - SZ-52_LTR 13107 0.3495 (1047/2996) 1 Intact Os_TE_838596 Os_TE_838579 Chr1 31132842 31132843 + ORSgTERT00200961 124 0.4938 (1471/2979) 0 * * Os_TE_838578 Chr1 31132793 31132794 + MPING 430 0.0003 (1/2984) 0 * * Os_TE_838553 Chr1 31116012 31116013 + ORSgTEMT00502401 147 0.0005 (1/1934) 0 * * Os_TE_838547 Chr1 31107958 31107959 + RIREX_LTR 8828 0.0003 (1/2997) 0 * Os_TE_838546 Os_TE_838546 Chr1 31107954 31107953 - RIREX_LTR 8828 0.0003 (1/2996) 0 * Os_TE_838547 Os_TE_838540 Chr1 31102721 31102720 - ORSiTERT00200082 1437 0.0003 (1/2977) 0 * * Os_TE_838536 Chr1 31101358 31101359 - SC-8_LTR 4951 0.0033 (10/2989) 0 * Os_TE_838535 Os_TE_838535 Chr1 31101354 31101353 + SC-8_LTR 4951 0.0033 (10/2986) 0 * Os_TE_838536 Os_TE_838522 Chr1 31089454 31089455 - ORSiTERT00200154 9386 0.5349 (1527/2855) 0 * Os_TE_838521 Os_TE_838521 Chr1 31089448 31089447 + TRUNCATOR 2918 0.5515 (1613/2925) 0 * Os_TE_838522 Os_TE_838501 Chr1 31076691 31076690 - SZ-22_LTR 4403 0.0003 (1/2943) 0 * * Os_TE_838495 Chr1 31070933 31070934 + ORSiTERTOOT00296 5553 0.0007 (2/2993) 0 * Os_TE_838494 Os_TE_838494 Chr1 31070929 31070928 - SC-3_LTR 5748 0.0007 (2/2992) 0 * Os_TE_838495 Os_TE_838491 Chr1 31064941 31064942 - ORSiTETNOOT00134 607 0.0003 (1/2995) 0 * Os_TE_838490 Os_TE_838490 Chr1 31064934 31064933 + TWIF 586 0.0003 (1/2996) 0 * Os_TE_838491 Os_TE_838483 Chr1 31061635 31061634 - COPI2_LTR 4733 0.0003 (1/2986) 0 * * Os_TE_838482 Chr1 31061190 31061191 - COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_838481 Os_TE_838481 Chr1 31061186 31061185 + COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_838482 Os_TE_838458 Chr1 31049819 31049820 + COPIA2-LTR_OS 6433 0.0157 (47/2996) 0 * Os_TE_838457 Os_TE_838457 Chr1 31049815 31049814 - COPIA2-LTR_OS 6433 0.0346 (50/1446) 0 * Os_TE_838458 Os_TE_838456 Chr1 31049288 31049287 - COPI2_LTR 4733 0.0003 (1/2945) 0 * * Os_TE_838453 Chr1 31046238 31046239 + COPI2_LTR 4733 0.0003 (1/2977) 0 * Os_TE_838452 Os_TE_838452 Chr1 31046234 31046233 - COPI2_LTR 4733 0.0003 (1/2974) 0 * Os_TE_838453 Os_TE_838405 Chr1 31038558 31038559 + ORSgTEMT06100010 269 0.6569 (1957/2979) 0 * Os_TE_838404 Os_TE_838404 Chr1 31038556 31038555 - ORSgTEMT06100010 269 0.6612 (1977/2990) 0 * Os_TE_838405 Os_TE_838379 Chr1 31037194 31036957 - ORSgTEMT01601696 238 0.3083 (872/2828) 1 Intact Os_TE_838378 Os_TE_838378 Chr1 31036957 31037194 - ORSgTEMT01601432 239 0.3495 (1039/2973) 1 Intact Os_TE_838379 Os_TE_838350 Chr1 31014344 31014343 + ORSgTEMT01601591 242 0.0010 (3/2998) 0 * Os_TE_838349 Os_TE_838349 Chr1 31014338 31014339 + STOWAWAY51_OS 246 0.0010 (3/2999) 0 * Os_TE_838350 Os_TE_838304 Chr1 30996499 30996498 - TOS17LTR 138 0.0003 (1/2996) 0 * * Os_TE_838302 Chr1 30992202 30992203 + INDITTO 263 0.0003 (1/2981) 0 * Os_TE_838301 Os_TE_838301 Chr1 30992200 30992199 - INDITTO 263 0.0003 (1/2976) 0 * Os_TE_838302 Os_TE_838270 Chr1 30985765 30985766 + STOWAWAY21_OS 243 0.0003 (1/2912) 0 * * Os_TE_838243 Chr1 30971238 30971237 - STOWAWAY51_OS 246 0.0003 (1/2978) 0 * Os_TE_838242 Os_TE_838242 Chr1 30971232 30971233 + STOWAWAY51_OS 246 0.0003 (1/2992) 0 * Os_TE_838243 Os_TE_838187 Chr1 30937767 30937768 - MPING 430 0.0003 (1/2954) 0 * * Os_TE_838184 Chr1 30937737 30937736 + MPING 430 0.0007 (2/2943) 0 * * Os_TE_838183 Chr1 30937594 30937595 - ORSgTETNOOT02565 240 0.0003 (1/2981) 0 * Os_TE_838182 Os_TE_838182 Chr1 30937591 30937590 + ORSgTETNOOT00012 241 0.0003 (1/2978) 0 * Os_TE_838183 Os_TE_838166 Chr1 30929724 30929723 - STOWAWAY51_OS 246 0.0003 (1/2991) 0 * Os_TE_838165 Os_TE_838165 Chr1 30929718 30929719 + STOWAWAY51_OS 246 0.0003 (1/2991) 0 * Os_TE_838166 Os_TE_838139 Chr1 30916232 30916231 + ORSgTEMT05200196 285 0.8835 (2646/2995) 0.94 * * Os_TE_838085 Chr1 30895621 30895622 + RETROSAT2LTR 12796 0.3208 (958/2986) 0 * Os_TE_838084 Os_TE_838084 Chr1 30895619 30895618 - RETROSAT2LTR 12796 0.3272 (980/2995) 0 * Os_TE_838085 Os_TE_838059 Chr1 30890576 30890575 - ORSgTEMT00900099 250 0.0017 (5/2990) 0 * Os_TE_838058 Os_TE_838058 Chr1 30890572 30890573 + ORSgTEMT00901844 250 0.0017 (5/2987) 0 * Os_TE_838059 Os_TE_838048 Chr1 30889982 30889983 + INDITTO 263 0.0007 (2/2947) 0 * Os_TE_838047 Os_TE_838047 Chr1 30889980 30889979 - INDITTO 263 0.0007 (2/2996) 0 * Os_TE_838048 Os_TE_838046 Chr1 30889726 30889727 - INDITTO 263 0.3249 (953/2933) 0 * Os_TE_838045 Os_TE_838045 Chr1 30889724 30889723 + INDITTO 263 0.3240 (952/2938) 0 * Os_TE_838046 Os_TE_838039 Chr1 30887875 30887876 + COPI2_LTR 4733 0.0003 (1/2993) 0 * Os_TE_838038 Os_TE_838038 Chr1 30887871 30887870 - COPI2_LTR 4733 0.0003 (1/2991) 0 * Os_TE_838039 Os_TE_838037 Chr1 30887788 30887789 + COPIA2-LTR_OS 6433 0.0010 (3/2996) 0 * Os_TE_838036 Os_TE_838036 Chr1 30887784 30887783 - COPIA2-LTR_OS 6433 0.0010 (3/2998) 0 * Os_TE_838037 Os_TE_838035 Chr1 30887755 30887754 + COPI2_LTR 4733 0.0003 (1/2993) 0 * * Os_TE_838034 Chr1 30887745 30887746 + COPIA2-LTR_OS 6433 0.0007 (2/2994) 0 * Os_TE_838033 Os_TE_838033 Chr1 30887741 30887740 - COPIA2-LTR_OS 6433 0.0007 (2/2988) 0 * Os_TE_838034 Os_TE_837972 Chr1 30862728 30862727 + COPI2_LTR 4733 0.0525 (156/2970) 0 * * Os_TE_837930 Chr1 30843511 30843512 + ORSiTERTOOT00296 5553 0.0003 (1/2992) 0 * Os_TE_837929 Os_TE_837929 Chr1 30843507 30843506 - SC-3_LTR 5748 0.0003 (1/2987) 0 * Os_TE_837930 Os_TE_837926 Chr1 30840894 30840895 + MPING 430 0.0003 (1/2997) 0 * Os_TE_837925 Os_TE_837925 Chr1 30840892 30840891 - MPING 430 0.0003 (1/2993) 0 * Os_TE_837926 Os_TE_837920 Chr1 30837020 30837019 - ECR 394 0.0012 (3/2515) 0 * * Os_TE_837902 Chr1 30824168 30824169 - MPING 430 0.0003 (1/2995) 0 * * Os_TE_837890 Chr1 30819996 30819995 - ORSgTEMT00900417 246 0.0007 (2/2973) 0 * * Os_TE_837889 Chr1 30818348 30818349 + COPI2_LTR 4733 0.0003 (1/2989) 0 * Os_TE_837888 Os_TE_837888 Chr1 30818344 30818343 - COPI2_LTR 4733 0.0003 (1/2991) 0 * Os_TE_837889 Os_TE_837850 Chr1 30812964 30812965 - ORSiTERTOOT00131 822 0.0003 (1/2935) 0 * * Os_TE_837821 Chr1 30803196 30801082 - COPIA3-LTR_OS 5061 0.5635 (1673/2969) 1 Intact Os_TE_837810 Os_TE_837810 Chr1 30801082 30803196 + COPIA3-LTR_OS 5061 0.5688 (1621/2850) 1 Intact Os_TE_837821 Os_TE_837787 Chr1 30796650 30796651 + MPING 430 0.0003 (1/2982) 0 * Os_TE_837786 Os_TE_837786 Chr1 30796648 30796647 - MPING 430 0.0003 (1/2974) 0 * Os_TE_837787 Os_TE_837785 Chr1 30795987 30795837 - ORSgTEMT00500110 151 0.5619 (1670/2972) 1 Intact * Os_TE_837749 Chr1 30774952 30774718 + ORSgTEMT01602413 239 0.5635 (1664/2953) 1 Intact * Os_TE_837713 Chr1 30764942 30764797 + ORSgTEMT01701145 147 0.5585 (1670/2990) 1 Intact Os_TE_837712 Os_TE_837712 Chr1 30764797 30764938 - STOWAWAY50_OS 174 0.5583 (1670/2991) 1 Intact Os_TE_837713 Os_TE_837690 Chr1 30749374 30749373 + RIRE2_LTR 11306 0.0003 (1/2989) 0 * * Os_TE_837688 Chr1 30747011 30747010 + RETRO2_LTR 12874 0.0328 (37/1128) 0 * * Os_TE_837679 Chr1 30741090 30741089 + ORSgTEMT00501795 147 0.6307 (1882/2984) 0 * Os_TE_837678 Os_TE_837678 Chr1 30741088 30741089 - ORSgTEMT00500974 146 0.6301 (1877/2979) 0 * Os_TE_837679 Os_TE_837667 Chr1 30736802 30735872 + COPIA2-LTR_OS 6433 0.8446 (2490/2948) 1 Solo_LTR Os_TE_837663 Os_TE_837663 Chr1 30735872 30736802 - COPIA2-LTR_OS 6433 0.8298 (2472/2979) 1 Solo_LTR Os_TE_837667 Os_TE_837661 Chr1 30734644 30734643 - RIREX_LTR 8828 0.0003 (1/2966) 0 * * Os_TE_837658 Chr1 30733671 30733672 - INDITTO 263 0.1799 (538/2991) 0 * Os_TE_837657 Os_TE_837657 Chr1 30733669 30733668 - ORSgTETNOOT00053 263 0.1809 (542/2996) 0 * Os_TE_837658 Os_TE_837645 Chr1 30731668 30731667 - TYPEM 227 0.0017 (5/2986) 0 * Os_TE_837644 Os_TE_837644 Chr1 30731667 30731668 - ORSgTEMT02400246 177 0.0013 (4/2984) 0 * Os_TE_837645 Os_TE_837641 Chr1 30727668 30727667 + NDNA1TNA_OS 334 0.0130 (39/2997) 0 * * Os_TE_837622 Chr1 30718385 30718386 + COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_837621 Os_TE_837621 Chr1 30718381 30718380 - COPIA2-LTR_OS 6433 0.0010 (1/1048) 0 * Os_TE_837622 Os_TE_837610 Chr1 30707157 30707435 + KIDDOB 280 0.3273 (980/2994) 1 Intact * Os_TE_837609 Chr1 30707142 30707141 + TRUNCATOR 2918 0.0010 (1/1002) 0 * * Os_TE_837566 Chr1 30696598 30696597 + COPI2_LTR 4733 0.0003 (1/2996) 0 * * Os_TE_837563 Chr1 30695634 30695635 - COPI2_LTR 4733 0.0003 (1/2993) 0 * * Os_TE_837551 Chr1 30692568 30692567 - TEMPINDAS 4259 0.6809 (2029/2980) 0 * * Os_TE_837525 Chr1 30680729 30680728 + ORSiTERT00100071 4657 0.0017 (5/2922) 0 * * Os_TE_837514 Chr1 30679030 30679031 - TESS 244 0.0127 (38/2996) 0 * Os_TE_837513 Os_TE_837513 Chr1 30679023 30679022 + TESS 244 0.0127 (38/2996) 0 * Os_TE_837514 Os_TE_837508 Chr1 30677407 30677408 - ORSgTEMT00501158 153 0.0131 (39/2974) 0 * * Os_TE_837507 Chr1 30675715 30675716 + RIREX_LTR 8828 0.0003 (1/2977) 0 * * Os_TE_837469 Chr1 30661247 30661248 - SZ-62LTR 3649 0.0019 (5/2602) 0 * Os_TE_837468 Os_TE_837468 Chr1 30661243 30661242 + SZ-62LTR 3649 0.0018 (5/2751) 0 * Os_TE_837469 Os_TE_837455 Chr1 30656872 30656873 + rn_179-105_LTR 4837 0.1276 (381/2987) 0 * Os_TE_837454 Os_TE_837454 Chr1 30656868 30656867 - rn_179-105_LTR 4837 0.1265 (373/2949) 0 * Os_TE_837455 Os_TE_837453 Chr1 30656847 30656848 + TWIF 586 0.0020 (6/2995) 0 * Os_TE_837452 Os_TE_837452 Chr1 30656840 30656839 - ORSiTETNOOT00134 607 0.0020 (6/2972) 0 * Os_TE_837453 Os_TE_837451 Chr1 30655698 30655699 - RIREX_LTR 8828 0.0010 (3/2995) 0 * Os_TE_837450 Os_TE_837450 Chr1 30655694 30655693 + RIREX_LTR 8828 0.0010 (3/2994) 0 * Os_TE_837451 Os_TE_837400 Chr1 30644634 30640090 - MuDR3_OS 8604 0.3128 (922/2948) 1 Intact Os_TE_837393 Os_TE_837393 Chr1 30640086 30644634 + MuDR3_OS 8604 0.3220 (960/2981) 1 Intact Os_TE_837400 Os_TE_837392 Chr1 30639886 30639887 - ORSiTERTOOT00332 5395 0.0013 (4/2975) 0 * Os_TE_837391 Os_TE_837391 Chr1 30639882 30639881 + ORSiTERTOOT00332 5395 0.0013 (4/2968) 0 * Os_TE_837392 Os_TE_837373 Chr1 30620351 30620352 - COPIA2-LTR_OS 6433 0.0003 (1/2960) 0 * * Os_TE_837362 Chr1 30616846 30616847 - RIRE2_LTR 11306 0.0003 (1/2944) 0 * Os_TE_837361 Os_TE_837361 Chr1 30616842 30616841 + RIRE2_LTR 11306 0.0003 (1/2933) 0 * Os_TE_837362 Os_TE_837360 Chr1 30616227 30616226 - ORSgTEMT00501447 126 0.0131 (39/2987) 0 * * Os_TE_837358 Chr1 30614196 30614197 + ORSgTEMT00500201 140 0.0127 (38/2989) 0 * * Os_TE_837351 Chr1 30609115 30609116 + ORSgTEMT01701265 147 0.0121 (36/2970) 0 * Os_TE_837350 Os_TE_837350 Chr1 30609112 30609111 - STOWAWAY50_OS 174 0.0131 (39/2974) 0 * Os_TE_837351 Os_TE_837349 Chr1 30609108 30609109 + ORSgTEMT01700505 154 0.0125 (37/2964) 0 * * Os_TE_837346 Chr1 30608234 30608233 - MERMITED 1572 0.0127 (38/2993) 0 * * Os_TE_837338 Chr1 30600747 30600746 - RETROSAT5_LTR 13878 0.0017 (5/2956) 0 * * Os_TE_837300 Chr1 30584379 30584378 + ORSgTETNOOT00032 218 0.0117 (35/2995) 0 * * Os_TE_837297 Chr1 30583612 30583613 + ORSgTEMT01601591 242 0.0004 (1/2826) 0 * * Os_TE_837296 Chr1 30582436 30582435 + OSTE33 1012 0.0003 (1/2987) 0 * * Os_TE_837295 Chr1 30581711 30581712 - RETRO2_LTR 12874 0.6706 (1995/2975) 0 * * Os_TE_837288 Chr1 30576588 30576589 - ORSiTEMT01300001 950 0.7297 (2160/2960) 0 * * Os_TE_837285 Chr1 30573319 30573320 - STOWAWAY51_OS 246 0.0010 (3/2892) 0 * * Os_TE_837274 Chr1 30570704 30570705 - ORSiTERT00100062 5674 0.0003 (1/2977) 0 * Os_TE_837273 Os_TE_837273 Chr1 30570700 30570699 + OSTONOR1_LTR 6440 0.0003 (1/2977) 0 * Os_TE_837274 Os_TE_837256 Chr1 30559114 30559115 - SC-3_LTR 5748 0.0017 (5/2998) 0 * Os_TE_837255 Os_TE_837255 Chr1 30559110 30559109 + ORSiTERTOOT00296 5553 0.0020 (6/2999) 0 * Os_TE_837256 Os_TE_837232 Chr1 30546741 30546740 + STOWAWAY51_OS 246 0.0003 (1/2991) 0 * Os_TE_837231 Os_TE_837231 Chr1 30546735 30546736 - STOWAWAY51_OS 246 0.0003 (1/2997) 0 * Os_TE_837232 Os_TE_837214 Chr1 30536283 30536282 - ORSgTEMT02400179 221 0.0626 (187/2989) 0 * * Os_TE_837182 Chr1 30522231 30522232 + SPMLIKE 10989 0.0003 (1/2955) 0 * * Os_TE_837160 Chr1 30513630 30513631 + COPIA2-LTR_OS 6433 0.0020 (6/2991) 0 * Os_TE_837159 Os_TE_837159 Chr1 30513623 30513622 - COPIA2-LTR_OS 6433 0.0020 (6/2993) 0 * Os_TE_837160 Os_TE_837130 Chr1 30503869 30503870 - SC-8_LTR 4951 0.0003 (1/2975) 0 * Os_TE_837129 Os_TE_837129 Chr1 30503865 30503864 + SC-8_LTR 4951 0.0003 (1/2987) 0 * Os_TE_837130 Os_TE_837125 Chr1 30501997 30501998 + ORSgTETNOOT00908 242 0.0003 (1/2986) 0 * * Os_TE_837123 Chr1 30501254 30500919 + ORSgTEMT00100531 325 0.3397 (1016/2991) 1 Intact Os_TE_837122 Os_TE_837122 Chr1 30500912 30501252 + NDNA1TNA_OS 334 0.3358 (1002/2984) 1 Intact Os_TE_837123 Os_TE_837118 Chr1 30499828 30499829 - COPI2_LTR 4733 0.0010 (3/2999) 0 * Os_TE_837117 Os_TE_837117 Chr1 30499824 30499823 + COPI2_LTR 4733 0.0010 (3/2999) 0 * Os_TE_837118 Os_TE_837115 Chr1 30498867 30498866 + MPING 430 0.0017 (5/2996) 0 * * Os_TE_837106 Chr1 30487484 30487483 + ORSgTETNOOT01668 244 0.0358 (106/2964) 0 * * Os_TE_837095 Chr1 30478526 30478527 - NDNA1TNA_OS 334 0.0063 (19/2999) 0 * Os_TE_837094 Os_TE_837094 Chr1 30478524 30478523 + NDNA1TNA_OS 334 0.0060 (18/2999) 0 * Os_TE_837095 Os_TE_837093 Chr1 30478053 30478054 - RIREX_LTR 8828 0.0060 (18/2989) 0 * Os_TE_837092 Os_TE_837092 Chr1 30478049 30478048 + RIREX_LTR 8828 0.0060 (18/2989) 0 * Os_TE_837093 Os_TE_837084 Chr1 30474285 30474286 + ORSgTEMT01601591 242 0.0003 (1/2978) 0 * * Os_TE_837055 Chr1 30464903 30464902 + ORSgTEMT01601488 239 0.0058 (17/2949) 0 * * Os_TE_837046 Chr1 30457072 30457071 + TRUNCATOR 2918 0.1561 (468/2999) 0 * Os_TE_837045 Os_TE_837045 Chr1 30457071 30457072 - TRUNCATOR 2918 0.1521 (455/2992) 0 * Os_TE_837046 Os_TE_837042 Chr1 30456106 30456107 + ORSiTERTOOT00226 792 0.0003 (1/2975) 0 * Os_TE_837041 Os_TE_837041 Chr1 30456102 30456101 + ORSiTERTOOT00226 792 0.0003 (1/2979) 0 * Os_TE_837042 Os_TE_836944 Chr1 30413445 30413444 + COPIA2-LTR_OS 6433 0.0030 (9/2959) 0 * * Os_TE_836931 Chr1 30406651 30406652 + COPIA2-LTR_OS 6433 0.0020 (6/2994) 0 * Os_TE_836930 Os_TE_836930 Chr1 30406647 30406646 - COPIA2-LTR_OS 6433 0.0020 (6/2991) 0 * Os_TE_836931 Os_TE_836916 Chr1 30398824 30398825 + ORSgTETNOOT01998 254 0.0101 (30/2984) 0 * Os_TE_836915 Os_TE_836915 Chr1 30398822 30398821 + ORSgTETNOOT01834 251 0.0101 (30/2983) 0 * Os_TE_836916 Os_TE_836900 Chr1 30388592 30388591 + ORSgTETN00200005 1121 0.6245 (1848/2959) 0 * Os_TE_836899 Os_TE_836899 Chr1 30388572 30388573 + CACTA-B 1103 0.6126 (1798/2935) 0 * Os_TE_836900 Os_TE_836889 Chr1 30381378 30381379 + RETROSAT2LTR 12796 0.4444 (915/2059) 0 * Os_TE_836888 Os_TE_836888 Chr1 30381376 30381375 - RETROSAT2LTR 12796 0.6284 (1862/2963) 0 * Os_TE_836889 Os_TE_836887 Chr1 30379934 30379935 + TWIFB1 3737 0.0003 (1/2902) 0 * * Os_TE_836875 Chr1 30375825 30375824 + TRUNCATOR 2918 0.0562 (168/2988) 0 * Os_TE_836874 Os_TE_836874 Chr1 30375824 30375825 - TRUNCATOR 2918 0.0536 (160/2986) 0 * Os_TE_836875 Os_TE_836852 Chr1 30361298 30361297 + ORSgTEMT01601591 242 0.0003 (1/2995) 0 * Os_TE_836851 Os_TE_836851 Chr1 30361295 30361296 + ORSgTEMT01601591 242 0.0003 (1/2998) 0 * Os_TE_836852 Os_TE_836826 Chr1 30350695 30350694 - RETROSAT4_LTR 13504 0.4190 (1216/2902) 0 * * Os_TE_836811 Chr1 30346235 30346236 - RIREX_LTR 8828 0.0051 (15/2942) 0 * Os_TE_836810 Os_TE_836810 Chr1 30346231 30346230 + RIREX_LTR 8828 0.0044 (13/2946) 0 * Os_TE_836811 Os_TE_836806 Chr1 30343760 30343761 - RIREX_LTR 8828 0.0003 (1/2995) 0 * Os_TE_836805 Os_TE_836805 Chr1 30343756 30343755 + RIREX_LTR 8828 0.0003 (1/2997) 0 * Os_TE_836806 Os_TE_836803 Chr1 30340687 30340688 + ORSiTERTOOT00332 5395 0.0067 (20/2998) 0 * Os_TE_836802 Os_TE_836802 Chr1 30340683 30340682 - ORSiTERTOOT00332 5395 0.0067 (20/2997) 0 * Os_TE_836803 Os_TE_836762 Chr1 30319976 30319975 - ORSiTETNOOT00216 3569 0.0760 (225/2961) 0 * * Os_TE_836742 Chr1 30310944 30310943 + STOWAWAY44_OS 240 0.0003 (1/2994) 0 * Os_TE_836741 Os_TE_836741 Chr1 30310941 30310942 - STOWAWAY44_OS 240 0.0003 (1/2995) 0 * Os_TE_836742 Os_TE_836739 Chr1 30310477 30310240 + ORSgTEMT01601934 207 0.3330 (989/2970) 1 Intact Os_TE_836736 Os_TE_836736 Chr1 30310240 30310477 - ORSgTEMT01601696 238 0.3118 (899/2883) 1 Intact Os_TE_836739 Os_TE_836716 Chr1 30305386 30305387 - INDITTO 263 0.0054 (16/2986) 0 * Os_TE_836715 Os_TE_836715 Chr1 30305384 30305383 + INDITTO 263 0.0054 (16/2986) 0 * Os_TE_836716 Os_TE_836687 Chr1 30292126 30292127 + RETROSAT4_LTR 13504 0.0031 (9/2894) 0 * Os_TE_836686 Os_TE_836686 Chr1 30292122 30292121 - RETROSAT4_LTR 13504 0.0063 (18/2873) 0 * Os_TE_836687 Os_TE_836651 Chr1 30278973 30278974 + MPING 430 0.0040 (12/2972) 0 * Os_TE_836650 Os_TE_836650 Chr1 30278971 30278970 - MPING 430 0.0040 (12/2987) 0 * Os_TE_836651 Os_TE_836640 Chr1 30272637 30272638 + RIREX_LTR 8828 0.0569 (170/2988) 0 * Os_TE_836639 Os_TE_836639 Chr1 30272633 30272632 - RIREX_LTR 8828 0.0556 (166/2988) 0 * Os_TE_836640 Os_TE_836622 Chr1 30265336 30265337 - SZ-17_LTR 3387 0.0003 (1/2989) 0 * Os_TE_836621 Os_TE_836621 Chr1 30265332 30265331 + SZ-17_LTR 3387 0.0003 (1/2990) 0 * Os_TE_836622 Os_TE_836620 Chr1 30265130 30265131 + RIREX_LTR 8828 0.0007 (2/2995) 0 * Os_TE_836619 Os_TE_836619 Chr1 30265126 30265125 - RIREX_LTR 8828 0.0007 (2/2996) 0 * Os_TE_836620 Os_TE_836617 Chr1 30264920 30264921 - ENSPM4_OS 11610 0.6740 (2014/2988) 0 * * Os_TE_836563 Chr1 30240561 30240562 + ORSgTETNOOT00032 218 0.0621 (186/2994) 0 * * Os_TE_836536 Chr1 30232054 30232055 + TNR2A 152 0.0640 (191/2984) 0 * Os_TE_836535 Os_TE_836535 Chr1 30232038 30232037 + TNR2A 152 0.0654 (195/2982) 0 * Os_TE_836536 Os_TE_836534 Chr1 30231920 30231921 + ORSgTEMT01601591 242 0.0007 (2/2988) 0 * * Os_TE_836520 Chr1 30226780 30226781 + SPMLIKE 10989 0.5104 (1503/2945) 0 * Os_TE_836519 Os_TE_836519 Chr1 30226778 30226777 - ORSgTETN00200001 10994 0.4675 (1287/2753) 0 * Os_TE_836520 Os_TE_836511 Chr1 30220718 30220719 + ORSiTERTOOT00296 5553 0.0003 (1/2961) 0 * Os_TE_836510 Os_TE_836510 Chr1 30220714 30220713 - SC-3_LTR 5748 0.0003 (1/2957) 0 * Os_TE_836511 Os_TE_836498 Chr1 30211731 30211730 + Cassandra_OS-LTR 764 0.0004 (1/2750) 0 * * Os_TE_836451 Chr1 30179341 30179340 + ORSgTEMT01601591 242 0.0010 (3/2988) 0 * Os_TE_836450 Os_TE_836450 Chr1 30179335 30179336 + STOWAWAY51_OS 246 0.0013 (4/2990) 0 * Os_TE_836451 Os_TE_836448 Chr1 30178231 30178232 - AMYLTP 383 0.0010 (3/2880) 0 * * Os_TE_836442 Chr1 30177929 30177928 - TNR1 237 0.0004 (1/2725) 0 * * Os_TE_836419 Chr1 30172615 30172616 - HARB-1_OS 5166 0.0003 (1/2996) 0 * Os_TE_836418 Os_TE_836418 Chr1 30172613 30172612 + HARB-1_OS 5166 0.0003 (1/2994) 0 * Os_TE_836419 Os_TE_836417 Chr1 30171207 30171208 + ORSiTERTOOT00296 5553 0.0404 (121/2998) 0 * * Os_TE_836402 Chr1 30163995 30163996 + GAIJIN 147 0.0426 (123/2889) 0 * Os_TE_836401 Os_TE_836401 Chr1 30163993 30163992 - ORSgTEMT00502237 143 0.0672 (201/2990) 0 * Os_TE_836402 Os_TE_836399 Chr1 30163969 30163970 - AMYLTP 383 0.0648 (181/2792) 0 * Os_TE_836398 Os_TE_836398 Chr1 30163961 30163960 + AMYLTP 383 0.0996 (279/2800) 0 * Os_TE_836399 Os_TE_836393 Chr1 30163439 30163438 + ORSgTEMT00101674 340 0.0663 (198/2985) 0 * * Os_TE_836387 Chr1 30162700 30162699 + ORSgTEMT00502465 144 0.0010 (3/2963) 0 * * Os_TE_836384 Chr1 30162180 30162181 - WUJI 257 0.0353 (104/2943) 0 * * Os_TE_836383 Chr1 30161200 30161201 - INDITTO 263 0.0320 (95/2971) 0 * Os_TE_836382 Os_TE_836382 Chr1 30161198 30161197 + INDITTO 263 0.0319 (94/2946) 0 * Os_TE_836383 Os_TE_836354 Chr1 30150709 30150708 + ORSgTEMT01700715 134 0.7342 (2152/2931) 0 * * Os_TE_836352 Chr1 30149599 30150705 + RETRO2_LTR 12874 0.2724 (796/2922) 1 Solo_LTR * Os_TE_836348 Chr1 30147139 30147138 + STOWAWAY51_OS 246 0.0003 (1/2985) 0 * Os_TE_836347 Os_TE_836347 Chr1 30147133 30147134 + ORSgTEMT01601591 242 0.0003 (1/2977) 0 * Os_TE_836348 Os_TE_836346 Chr1 30146018 30146019 + COPI2_LTR 4733 0.0123 (37/2999) 0 * Os_TE_836345 Os_TE_836345 Chr1 30146014 30146013 - COPI2_LTR 4733 0.0127 (38/2999) 0 * Os_TE_836346 Os_TE_836321 Chr1 30119728 30119729 + GYPSY-A_LTR 8951 0.0003 (1/2988) 0 * * Os_TE_836314 Chr1 30118354 30118355 - COPIA2-LTR_OS 6433 0.0013 (4/2995) 0 * Os_TE_836313 Os_TE_836313 Chr1 30118350 30118349 + COPIA2-LTR_OS 6433 0.0013 (4/2993) 0 * Os_TE_836314 Os_TE_836294 Chr1 30110311 30110310 + EnSpm-13_OS 11171 0.0547 (161/2945) 0 * Os_TE_836293 Os_TE_836293 Chr1 30110310 30110311 - EnSpm-13_OS 11171 0.0553 (163/2945) 0 * Os_TE_836294 Os_TE_836264 Chr1 30099424 30099423 - STOWAWAY8_OS 259 0.0010 (3/2976) 0 * * Os_TE_836261 Chr1 30098658 30098657 - RIRE3A_LTR 10580 0.0004 (1/2285) -1 * * Os_TE_836259 Chr1 30097152 30097153 + ORSiTERTOOT00296 5553 0.0003 (1/2995) 0 * Os_TE_836258 Os_TE_836258 Chr1 30097148 30097147 - SC-3_LTR 5748 0.0003 (1/2995) 0 * Os_TE_836259 Os_TE_836224 Chr1 30077684 30077685 - TRUNCATOR2_LTR 2904 0.0335 (100/2981) 0 * Os_TE_836223 Os_TE_836223 Chr1 30077680 30077679 + ORSiCMCM00100019 2717 0.0283 (84/2973) 0 * Os_TE_836224 Os_TE_836221 Chr1 30077089 30077090 - SZ-55_LTR 10318 0.0067 (20/2996) 0 * Os_TE_836220 Os_TE_836220 Chr1 30077085 30077084 + SZ-55_LTR 10318 0.0070 (21/2993) 0 * Os_TE_836221 Os_TE_836212 Chr1 30074372 30074371 + HELITRON3_OS 12693 0.0003 (1/2915) 0 * Os_TE_836211 Os_TE_836211 Chr1 30074371 30074372 - HELITRON3_OS 12693 0.0003 (1/2909) 0 * Os_TE_836212 Os_TE_836193 Chr1 30071077 30071076 - ORSgTETNOOT00477 252 0.0041 (12/2893) 0 * * Os_TE_836189 Chr1 30067391 30067392 + NDNA1TNA_OS 334 0.5339 (740/1386) 0 * * Os_TE_836181 Chr1 30066544 30066545 + ORSgTEMT00100693 201 0.0004 (1/2801) 0 * * Os_TE_836164 Chr1 30057608 30057609 - ORSgTEMT00600085 364 0.0267 (80/2997) 0 * Os_TE_836163 Os_TE_836163 Chr1 30057606 30057605 + CASTAWAY 364 0.0274 (82/2993) 0 * Os_TE_836164 Os_TE_836137 Chr1 30045083 30044920 + WUWU 113 0.8671 (2596/2994) 1 Intact Os_TE_836136 Os_TE_836136 Chr1 30044920 30045013 + WUWU 113 0.8686 (2604/2998) 1 Intact Os_TE_836137 Os_TE_836135 Chr1 30044383 30044384 - MERMITEJ 1498 0.0007 (2/2996) 0 * Os_TE_836134 Os_TE_836134 Chr1 30044375 30044374 - MERMITEJ 1498 0.0007 (2/2996) 0 * Os_TE_836135 Os_TE_836111 Chr1 30028526 30028527 - INDITTO 263 0.0482 (144/2988) 0 * Os_TE_836110 Os_TE_836110 Chr1 30028524 30028523 + INDITTO 263 0.0482 (144/2989) 0 * Os_TE_836111 Os_TE_836105 Chr1 30026639 30026640 + OSTE33 1012 0.0609 (181/2973) 0 * Os_TE_836104 Os_TE_836104 Chr1 30026630 30026629 + OSTE33 1012 0.0620 (183/2950) 0 * Os_TE_836105 Os_TE_836032 Chr1 29987694 29987695 + STOWAWAY11_OS 292 0.0006 (1/1705) -1 * * Os_TE_836028 Chr1 29986835 29986597 - ORSgTEMT01601493 303 0.8627 (2570/2979) 1 Intact Os_TE_836026 Os_TE_836026 Chr1 29986597 29986835 - ORSgTEMT01600152 226 0.8610 (2502/2906) 1 Intact Os_TE_836028 Os_TE_836016 Chr1 29985230 29985231 - ORSgTERT00201216 11284 0.1448 (427/2949) 0 * Os_TE_836015 Os_TE_836015 Chr1 29985226 29985225 - RIRE2_LTR 11306 0.1430 (420/2938) 0 * Os_TE_836016 Os_TE_836013 Chr1 29984521 29984522 - ORSgTETNOOT01607 258 0.1507 (410/2720) 0 * * Os_TE_836007 Chr1 29983310 29983311 + ORSgTEMT01701591 154 0.1437 (425/2957) 0 * * Os_TE_836002 Chr1 29981053 29980800 + ORSgTETNOOT00754 253 0.8642 (2583/2989) 1 Intact Os_TE_836000 Os_TE_836000 Chr1 29980799 29981053 - ORSgTETNOOT00754 253 0.8605 (2553/2967) 1 Intact Os_TE_836002 Os_TE_835998 Chr1 29980237 29980483 - ORSgTETNOOT00361 249 0.8631 (2327/2696) 1 Intact * Os_TE_835993 Chr1 29979179 29979180 + RIREX_LTR 8828 0.0003 (1/2987) 0 * Os_TE_835992 Os_TE_835992 Chr1 29979175 29979174 - RIREX_LTR 8828 0.0003 (1/2990) 0 * Os_TE_835993 Os_TE_835991 Chr1 29979119 29978466 - GYPSY1-LTR_OS 8900 0.8647 (2588/2993) 1 Solo_LTR Os_TE_835989 Os_TE_835989 Chr1 29978464 29979119 + GYPSY1-LTR_OS 8900 0.8611 (2555/2967) 1 Solo_LTR Os_TE_835991 Os_TE_835971 Chr1 29972888 29972889 + ORSgTETNOOT01998 254 0.0051 (15/2924) 0 * Os_TE_835970 Os_TE_835970 Chr1 29972886 29972885 + ORSgTETNOOT01834 251 0.0058 (17/2919) 0 * Os_TE_835971 Os_TE_835919 Chr1 29948467 29948466 - RIREX_LTR 8828 0.0003 (1/2995) 0 * * Os_TE_835893 Chr1 29941552 29941553 + MPING 430 0.0005 (1/1964) 0 * Os_TE_835892 Os_TE_835892 Chr1 29941550 29941549 - MPING 430 0.0005 (1/1976) 0 * Os_TE_835893 Os_TE_835883 Chr1 29939703 29939704 - SC-8_LTR 4951 0.0003 (1/2994) 0 * Os_TE_835882 Os_TE_835882 Chr1 29939699 29939698 + ORSiTERTOOT00381 4988 0.0003 (1/2991) 0 * Os_TE_835883 Os_TE_835880 Chr1 29938747 29938485 + INDITTO 263 0.1545 (462/2990) 1 Intact Os_TE_835878 Os_TE_835878 Chr1 29938485 29938747 - INDITTO 263 0.1541 (461/2991) 1 Intact Os_TE_835880 Os_TE_835875 Chr1 29935681 29935682 - COPIA2-LTR_OS 6433 0.0017 (5/2985) 0 * Os_TE_835874 Os_TE_835874 Chr1 29935677 29935676 + COPIA2-LTR_OS 6433 0.0017 (5/2983) 0 * Os_TE_835875 Os_TE_835872 Chr1 29933039 29933038 + ORSiTERTOOT00212 5795 0.0003 (1/2923) 0 * * Os_TE_835868 Chr1 29932066 29932065 + F569 228 0.0037 (11/2958) 0 * * Os_TE_835867 Chr1 29931946 29931517 + MPING 430 0.0612 (182/2975) 1 Intact Os_TE_835866 Os_TE_835866 Chr1 29931517 29931946 - MPING 430 0.0600 (178/2966) 1 Intact Os_TE_835867 Os_TE_835860 Chr1 29927270 29927271 - ORSiTETNOOT00134 607 0.0217 (64/2956) 0 * Os_TE_835859 Os_TE_835859 Chr1 29927263 29927262 + TWIF 586 0.0203 (60/2950) 0 * Os_TE_835860 Os_TE_835831 Chr1 29917598 29917599 + HARB-1_OS 5166 0.0167 (50/2989) 0 * Os_TE_835830 Os_TE_835830 Chr1 29917596 29917595 - HARB-1_OS 5166 0.0164 (49/2987) 0 * Os_TE_835831 Os_TE_835828 Chr1 29917153 29917152 + COPI2_LTR 4733 0.0007 (2/2975) 0 * * Os_TE_835803 Chr1 29905311 29905312 + SZ-19LTR 1513 0.0017 (5/2982) 0 * Os_TE_835802 Os_TE_835802 Chr1 29905307 29905306 - ATLANTYS-LTR_OS 13740 0.0013 (4/2986) 0 * Os_TE_835803 Os_TE_835778 Chr1 29893933 29893932 + OLO24 345 0.0008 (2/2598) 0 * * Os_TE_835777 Chr1 29893640 29893641 - RPO_OS 1983 0.0125 (6/479) -1 * * Os_TE_835764 Chr1 29887641 29887642 + OSTE33 1012 0.6833 (1922/2813) 0 * * Os_TE_835761 Chr1 29886605 29881331 + ORSiTERTOOT00350 5275 0.1976 (563/2849) 1 Intact * Os_TE_835743 Chr1 29872145 29872144 + TRUNCATOR 2918 0.1752 (525/2997) 0 * Os_TE_835742 Os_TE_835742 Chr1 29872144 29872145 - TRUNCATOR 2918 0.1667 (496/2975) 0 * Os_TE_835743 Os_TE_835740 Chr1 29871048 29871049 + RETROSAT2LTR 12796 0.0241 (72/2986) 0 * * Os_TE_835738 Chr1 29870028 29870027 - RIRE3_LTR 12054 0.0302 (87/2878) 0 * * Os_TE_835697 Chr1 29851763 29851764 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_835696 Os_TE_835696 Chr1 29851759 29851758 + COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_835697 Os_TE_835684 Chr1 29849190 29849191 + ORSgTEMT00100682 160 0.0137 (41/2989) 0 * * Os_TE_835681 Chr1 29848911 29848912 - AMYLTP 383 0.1165 (344/2953) 0 * Os_TE_835680 Os_TE_835680 Chr1 29848903 29848902 + AMYLTP 383 0.1173 (347/2958) 0 * Os_TE_835681 Os_TE_835650 Chr1 29836906 29838305 + OSTE33 1012 0.1825 (547/2997) 1 Intact * Os_TE_835644 Chr1 29835895 29835896 - COPI2_LTR 4733 0.0003 (1/2988) 0 * Os_TE_835643 Os_TE_835643 Chr1 29835891 29835890 + COPI2_LTR 4733 0.0003 (1/2988) 0 * Os_TE_835644 Os_TE_835641 Chr1 29835504 29835503 - HARB-1_OS 5166 0.0003 (1/2998) 0 * * Os_TE_835637 Chr1 29833248 29833249 + ORSiTERTOOT00296 5553 0.0003 (1/2990) 0 * Os_TE_835636 Os_TE_835636 Chr1 29833244 29833243 - SC-3_LTR 5748 0.0003 (1/2995) 0 * Os_TE_835637 Os_TE_835621 Chr1 29827298 29827299 - COPI2_LTR 4733 0.0007 (2/2900) 0 * Os_TE_835620 Os_TE_835620 Chr1 29827294 29827293 + COPI2_LTR 4733 0.0007 (2/2884) 0 * Os_TE_835621 Os_TE_835601 Chr1 29822145 29821815 - NDNA1TNA_OS 334 0.1769 (526/2973) 1 Intact Os_TE_835600 Os_TE_835600 Chr1 29821815 29822145 + NDNA1TNA_OS 334 0.1762 (528/2996) 1 Intact Os_TE_835601 Os_TE_835599 Chr1 29817696 29817697 - SC-3_LTR 5748 0.0010 (3/2991) 0 * Os_TE_835598 Os_TE_835598 Chr1 29817692 29817691 + SC-3_LTR 5748 0.0010 (3/2993) 0 * Os_TE_835599 Os_TE_835588 Chr1 29812477 29812478 - COPIA2-LTR_OS 6433 0.0003 (1/2975) 0 * * Os_TE_835579 Chr1 29806465 29806466 - ORSgTETNOOT02565 240 0.0882 (264/2994) 0 * * Os_TE_835578 Chr1 29805184 29805185 - SC-8_LTR 4951 0.0003 (1/2984) 0 * Os_TE_835577 Os_TE_835577 Chr1 29805180 29805179 + SC-8_LTR 4951 0.0003 (1/2987) 0 * Os_TE_835578 Os_TE_835565 Chr1 29801589 29801588 - ORSgTEMT01601208 238 0.0875 (262/2995) 0 * Os_TE_835564 Os_TE_835564 Chr1 29801586 29801587 + ORSgTEMT01601809 239 0.0872 (261/2992) 0 * Os_TE_835565 Os_TE_835524 Chr1 29781267 29781268 + ORSgTEMT03000039 377 0.0860 (253/2941) 0 * * Os_TE_835518 Chr1 29778363 29778364 - RIREX_LTR 8828 0.0003 (1/2985) 0 * Os_TE_835517 Os_TE_835517 Chr1 29778359 29778358 + RIREX_LTR 8828 0.0003 (1/2984) 0 * Os_TE_835518 Os_TE_835496 Chr1 29760431 29760432 - ORSgTEMT00600478 361 0.6634 (1855/2796) 0 * Os_TE_835495 Os_TE_835495 Chr1 29760426 29760425 + ORSgTEMT00600272 361 0.7164 (1733/2419) 0 * Os_TE_835496 Os_TE_835488 Chr1 29759202 29759201 + ORSgTEMT01701591 154 0.0840 (248/2951) 0 * * Os_TE_835461 Chr1 29742528 29742527 - INDITTO 263 0.0796 (236/2966) 0 * * Os_TE_835457 Chr1 29739737 29739738 + MDR2 6967 0.0132 (31/2357) 0 * Os_TE_835456 Os_TE_835456 Chr1 29739729 29739728 - MDR2 6967 0.0158 (39/2467) 0 * Os_TE_835457 Os_TE_835452 Chr1 29735409 29735410 + TEOS1 476 0.0613 (174/2839) 0 * Os_TE_835451 Os_TE_835451 Chr1 29735404 29735403 - TEOS1 476 0.0877 (255/2907) 0 * Os_TE_835452 Os_TE_835450 Chr1 29735129 29735130 + TWIF 586 0.0004 (1/2617) 0 * * Os_TE_835447 Chr1 29730948 29730949 + SETARIA1 1293 0.0857 (256/2986) 0 * Os_TE_835446 Os_TE_835446 Chr1 29730940 29730939 - SETARIA1 1293 0.0863 (258/2988) 0 * Os_TE_835447 Os_TE_835444 Chr1 29730420 29730419 + STOWAWAY51_OS 246 0.0003 (1/2996) 0 * Os_TE_835443 Os_TE_835443 Chr1 29730414 29730415 + ORSgTEMT01601591 242 0.0003 (1/2993) 0 * Os_TE_835444 Os_TE_835442 Chr1 29730157 29730158 - AMYLTP 383 0.7169 (2137/2981) 0 * Os_TE_835441 Os_TE_835441 Chr1 29730149 29730148 + AMYLTP 383 0.7169 (2137/2981) 0 * Os_TE_835442 Os_TE_835430 Chr1 29725897 29724193 - RPO_OS 1983 0.2802 (580/2070) 1 Intact Os_TE_835423 Os_TE_835423 Chr1 29724193 29725899 + RPO_OS 1983 0.2012 (557/2769) 1 Intact Os_TE_835430 Os_TE_835417 Chr1 29723096 29723097 - INDITTO 263 0.0041 (12/2961) 0 * Os_TE_835416 Os_TE_835416 Chr1 29723094 29723093 + INDITTO 263 0.0041 (12/2954) 0 * Os_TE_835417 Os_TE_835414 Chr1 29722209 29721592 - STOWAWAY8_OS 259 0.2017 (602/2985) 1 Intact * Os_TE_835394 Chr1 29712861 29712862 + AMYLTP 383 0.0017 (5/2871) 0 * Os_TE_835393 Os_TE_835393 Chr1 29712853 29712852 - AMYLTP 383 0.0098 (6/615) 0 * Os_TE_835394 Os_TE_835353 Chr1 29693968 29693967 - OSTE33 1012 0.0017 (1/598) 0 * * Os_TE_835346 Chr1 29691306 29691307 - RETROSAT2LTR 12796 0.0769 (44/572) 0 * Os_TE_835345 Os_TE_835345 Chr1 29691304 29691303 + RETROSAT2LTR 12796 0.0724 (43/594) 0 * Os_TE_835346 Os_TE_835344 Chr1 29690151 29690152 - RIREX_LTR 8828 0.0016 (1/619) 0 * Os_TE_835343 Os_TE_835343 Chr1 29690147 29690146 + RIREX_LTR 8828 0.0016 (1/622) 0 * Os_TE_835344 Os_TE_835330 Chr1 29679561 29679560 - RIRE3_LTR 12054 0.0003 (1/2995) 0 * * Os_TE_835328 Chr1 29678577 29678819 + ORSgTEMT00901387 241 0.1999 (597/2986) 1 Intact * Os_TE_835325 Chr1 29678469 29678468 + F770 284 0.0137 (41/2996) 0 * * Os_TE_835323 Chr1 29677190 29677191 + INDITTO 263 0.5453 (1632/2993) 0 * Os_TE_835322 Os_TE_835322 Chr1 29677188 29677187 - INDITTO 263 0.5481 (1641/2994) 0 * Os_TE_835323 Os_TE_835315 Chr1 29676372 29676373 - NDNA2TNA_OS 346 0.0018 (5/2756) 0 * * Os_TE_835314 Chr1 29675805 29675806 + MPING 430 0.0003 (1/2991) 0 * Os_TE_835313 Os_TE_835313 Chr1 29675803 29675802 - MPING 430 0.0003 (1/2991) 0 * Os_TE_835314 Os_TE_835303 Chr1 29667727 29667728 + ORSiTERTOOT00296 5553 0.0003 (1/2971) 0 * Os_TE_835302 Os_TE_835302 Chr1 29667723 29667722 - SC-3_LTR 5748 0.0003 (1/2974) 0 * Os_TE_835303 Os_TE_835301 Chr1 29666699 29666700 + SC-8_LTR 4951 0.0003 (1/2981) 0 * Os_TE_835300 Os_TE_835300 Chr1 29666695 29666694 - SC-8_LTR 4951 0.0003 (1/2984) 0 * Os_TE_835301 Os_TE_835263 Chr1 29652183 29652182 - ORSgTETNOOT02565 240 0.0891 (265/2973) 0 * * Os_TE_835255 Chr1 29647995 29647994 - ORSiTERTOOT00402 2660 0.0003 (1/2983) 0 * * Os_TE_835215 Chr1 29635233 29635232 + ORSgTEMT00500020 148 0.0007 (2/2953) 0 * * Os_TE_835173 Chr1 29617131 29617130 - RETRO1_LTR 8314 0.0280 (83/2963) 0 * * Os_TE_835146 Chr1 29613038 29613037 - RIREX_LTR 8828 0.0003 (1/2988) 0 * * Os_TE_835142 Chr1 29610889 29610890 + COPI2_LTR 4733 0.0003 (1/2999) 0 * Os_TE_835141 Os_TE_835141 Chr1 29610885 29610884 - COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_835142 Os_TE_835140 Chr1 29610734 29610735 - ORSiTERTOOT00332 5395 0.0003 (1/2992) 0 * Os_TE_835139 Os_TE_835139 Chr1 29610730 29610729 + ORSiTERTOOT00332 5395 0.0003 (1/2994) 0 * Os_TE_835140 Os_TE_835136 Chr1 29607676 29607677 + COPI1_LTR 4721 0.0013 (4/2998) 0 * Os_TE_835135 Os_TE_835135 Chr1 29607672 29607671 - SZ-25LTR 330 0.0010 (3/2996) 0 * Os_TE_835136 Os_TE_835132 Chr1 29604007 29604006 - STOWAWAY51_OS 246 0.0003 (1/2999) 0 * Os_TE_835131 Os_TE_835131 Chr1 29604001 29604002 + STOWAWAY51_OS 246 0.0003 (1/2996) 0 * Os_TE_835132 Os_TE_835130 Chr1 29603459 29603460 - RIREX_LTR 8828 0.1072 (321/2995) 0 * Os_TE_835129 Os_TE_835129 Chr1 29603455 29603454 + RIREX_LTR 8828 0.1083 (324/2992) 0 * Os_TE_835130 Os_TE_835111 Chr1 29598792 29598543 - ORSgTEMT00900349 250 0.1820 (544/2989) 1 Intact * Os_TE_835106 Chr1 29598251 29598534 - ORSgTEMT00901269 237 0.1822 (545/2991) 1 Intact * Os_TE_835094 Chr1 29594612 29594611 + SINE1OS 127 0.6428 (1920/2987) 0 * * Os_TE_835077 Chr1 29585054 29585055 + COPI1_LTR 4721 0.0007 (2/2920) 0 * * Os_TE_835076 Chr1 29584583 29584584 - STOWAWAY23_OS 100 0.0291 (86/2951) 0 * * Os_TE_835074 Chr1 29583432 29583433 - MPING 430 0.0003 (1/2982) 0 * Os_TE_835073 Os_TE_835073 Chr1 29583430 29583429 + MPING 430 0.0003 (1/2990) 0 * Os_TE_835074 Os_TE_835069 Chr1 29579598 29579597 + STOWAWAY51_OS 246 0.0007 (2/2947) 0 * * Os_TE_835060 Chr1 29576177 29576178 - OSTE14 885 0.7695 (2087/2712) -1 * * Os_TE_835048 Chr1 29573449 29573225 - ORSgTEMT00901801 225 0.2706 (809/2990) 1 Intact Os_TE_835045 Os_TE_835045 Chr1 29573226 29573440 - ORSgTEMT00901387 241 0.2701 (808/2992) 1 Intact Os_TE_835048 Os_TE_835043 Chr1 29571758 29571521 - ORSgTEMT01600639 228 0.2599 (771/2966) 1 Intact Os_TE_835040 Os_TE_835040 Chr1 29571521 29571758 - ORSgTEMT01601208 238 0.2617 (776/2965) 1 Intact Os_TE_835043 Os_TE_835022 Chr1 29557575 29557316 + STOWAWAY48_OS 261 0.3777 (1107/2931) 1 Intact * Os_TE_835015 Chr1 29557277 29556889 + STOWAWAY47_OS 148 0.7141 (1024/1434) 1 Intact * Os_TE_835006 Chr1 29551300 29551075 - ORSgTETNOOT02371 233 0.1789 (535/2990) 1 Intact * Os_TE_834996 Chr1 29549881 29549880 - INDITTO 263 0.0045 (13/2914) 0 * * Os_TE_834987 Chr1 29544544 29544543 - FOCUS 257 0.0003 (1/2926) 0 * * Os_TE_834975 Chr1 29543016 29543015 - ORSgTEMT01601208 238 0.8011 (1821/2273) 0 * Os_TE_834974 Os_TE_834974 Chr1 29543013 29543014 - ORSgTEMT01601208 238 0.8429 (2162/2565) 0 * Os_TE_834975 Os_TE_834968 Chr1 29536988 29536989 + ORSiTERTOOT00367 5639 0.0003 (1/2980) 0 * Os_TE_834967 Os_TE_834967 Chr1 29536984 29536983 - ORSiTERTOOT00367 5639 0.0003 (1/2986) 0 * Os_TE_834968 Os_TE_834966 Chr1 29535073 29535074 + GYPSI_LTR 18003 0.0088 (5/567) 0 * Os_TE_834965 Os_TE_834965 Chr1 29535069 29535068 - GYPSI_LTR 18003 0.0070 (4/569) 0 * Os_TE_834966 Os_TE_834964 Chr1 29533289 29533143 - ORSgTEMT00500026 147 0.2049 (555/2708) 1 Intact Os_TE_834963 Os_TE_834963 Chr1 29533140 29533286 + ORSgTEMT00500498 155 0.1845 (546/2960) 1 Intact Os_TE_834964 Os_TE_834961 Chr1 29533063 29533062 + STOWAWAY51_OS 246 0.0010 (3/2970) 0 * Os_TE_834960 Os_TE_834960 Chr1 29533057 29533058 - STOWAWAY51_OS 246 0.0010 (3/2979) 0 * Os_TE_834961 Os_TE_834947 Chr1 29527968 29527967 - RETROSAT2LTR 12796 0.0961 (271/2821) 0 * * Os_TE_834893 Chr1 29516037 29516038 + ORSgTETNOOT00012 241 0.0003 (1/2995) 0 * * Os_TE_834881 Chr1 29508211 29508210 + ORSgTEMT01601591 242 0.0007 (2/2998) 0 * Os_TE_834880 Os_TE_834880 Chr1 29508208 29508209 + ORSgTEMT01601591 242 0.0007 (2/2997) 0 * Os_TE_834881 Os_TE_834844 Chr1 29493375 29493374 + ORSiTERTOOT00226 792 0.0007 (2/2992) 0 * * Os_TE_834843 Chr1 29492947 29492948 + MPING 430 0.0003 (1/2991) 0 * Os_TE_834842 Os_TE_834842 Chr1 29492945 29492944 - MPING 430 0.0003 (1/2992) 0 * Os_TE_834843 Os_TE_834823 Chr1 29479030 29479031 + MERMITEJ 1498 0.0003 (1/2905) 0 * Os_TE_834822 Os_TE_834822 Chr1 29479022 29479021 + MERMITEA 1710 0.0003 (1/2917) 0 * Os_TE_834823 Os_TE_834817 Chr1 29477489 29477488 + ORSgTETNOOT00908 242 0.7432 (2202/2963) 0 * * Os_TE_834815 Chr1 29477436 29477437 + STOWAWAY51_OS 246 0.0017 (5/2924) 0 * * Os_TE_834808 Chr1 29476315 29476314 - STOWAWAY51_OS 246 0.0003 (1/2988) 0 * Os_TE_834807 Os_TE_834807 Chr1 29476312 29476313 - STOWAWAY51_OS 246 0.0003 (1/2992) 0 * Os_TE_834808 Os_TE_834712 Chr1 29440472 29440473 + OSTE33 1012 0.1022 (306/2994) 0 * Os_TE_834711 Os_TE_834711 Chr1 29440463 29440462 + OSTE33 1012 0.1000 (299/2990) 0 * Os_TE_834712 Os_TE_834703 Chr1 29433763 29433764 + ORSiTERTOOT00296 5553 0.0003 (1/2993) 0 * Os_TE_834702 Os_TE_834702 Chr1 29433759 29433758 - SC-3_LTR 5748 0.0003 (1/2991) 0 * Os_TE_834703 Os_TE_834671 Chr1 29415036 29415037 + ORSgTETNOOT01219 231 0.0003 (1/2992) 0 * Os_TE_834670 Os_TE_834670 Chr1 29415028 29415027 + ORSgTETNOOT00908 242 0.0003 (1/2990) 0 * Os_TE_834671 Os_TE_834667 Chr1 29412031 29412030 + ID-3 289 0.7659 (2140/2794) 0 * * Os_TE_834662 Chr1 29406244 29406245 - DNAUN1_OS 408 0.0005 (1/2170) 0 * * Os_TE_834661 Chr1 29405497 29405496 - ORSgTEMT00700002 381 0.0007 (2/2947) 0 * * Os_TE_834642 Chr1 29399366 29399367 - HARB-1_OS 5166 0.0003 (1/2974) 0 * Os_TE_834641 Os_TE_834641 Chr1 29399364 29399363 + HARB-1_OS 5166 0.0007 (2/2983) 0 * Os_TE_834642 Os_TE_834638 Chr1 29397300 29397299 + INDITTO 263 0.1133 (338/2984) 0 * * Os_TE_834600 Chr1 29380565 29380566 + MPING 430 0.0003 (1/2951) 0 * Os_TE_834599 Os_TE_834599 Chr1 29380563 29380562 - MPING 430 0.0003 (1/2953) 0 * Os_TE_834600 Os_TE_834589 Chr1 29369194 29369195 + COPIA2-LTR_OS 6433 0.0003 (1/2903) 0 * Os_TE_834588 Os_TE_834588 Chr1 29369190 29369189 - COPIA2-LTR_OS 6433 0.0003 (1/2907) 0 * Os_TE_834589 Os_TE_834575 Chr1 29358617 29361614 + TRUNCATOR 2918 0.1518 (419/2761) 0.9 Intact * Os_TE_834528 Chr1 29337848 29337849 + COPIA2-LTR_OS 6433 0.0024 (7/2976) 0 * Os_TE_834527 Os_TE_834527 Chr1 29337844 29337843 - COPIA2-LTR_OS 6433 0.0027 (8/2981) 0 * Os_TE_834528 Os_TE_834484 Chr1 29325892 29325893 - COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_834483 Os_TE_834483 Chr1 29325888 29325887 + COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_834484 Os_TE_834475 Chr1 29322745 29322746 - MPING 430 0.0003 (1/2991) 0 * Os_TE_834474 Os_TE_834474 Chr1 29322743 29322742 + MPING 430 0.0003 (1/2987) 0 * Os_TE_834475 Os_TE_834472 Chr1 29318916 29318917 - MUDRN1_OS 764 0.1106 (330/2984) 0 * * Os_TE_834471 Chr1 29318776 29318777 - SC-3_LTR 5748 0.0003 (1/2994) 0 * Os_TE_834470 Os_TE_834470 Chr1 29318772 29318771 + ORSiTERTOOT00296 5553 0.0003 (1/2992) 0 * Os_TE_834471 Os_TE_834442 Chr1 29300521 29300520 + ECSR 154 0.0017 (5/2991) 0 * * Os_TE_834431 Chr1 29294436 29294437 + OSR3_LTR 5201 0.0449 (134/2985) 0 * Os_TE_834430 Os_TE_834430 Chr1 29294432 29294431 - OSR3_LTR 5201 0.0447 (133/2978) 0 * Os_TE_834431 Os_TE_834420 Chr1 29287066 29287067 - COPI2_LTR 4733 0.0007 (2/2996) 0 * Os_TE_834419 Os_TE_834419 Chr1 29287062 29287061 + COPI2_LTR 4733 0.0010 (3/2995) 0 * Os_TE_834420 Os_TE_834377 Chr1 29265414 29265415 + ORSgTEMT00100560 340 0.0007 (2/2855) 0 * * Os_TE_834376 Chr1 29265024 29265025 + ENSPM5_OS 9581 0.0004 (1/2741) 0 * Os_TE_834375 Os_TE_834375 Chr1 29265022 29265021 - ENSPM5_OS 9581 0.0004 (1/2760) 0 * Os_TE_834376 Os_TE_834373 Chr1 29264599 29264598 - HARB-1_OS 5166 0.0005 (1/2129) 0 * * Os_TE_834368 Chr1 29262944 29262945 + ORSgTEMT01701254 154 0.0013 (1/780) 0 * * Os_TE_834363 Chr1 29262105 29253361 - SZ-40LTR 2465 0.0686 (202/2946) 1 Intact Os_TE_834362 Os_TE_834362 Chr1 29253361 29262105 + SZ-40LTR 2465 0.0682 (201/2946) 1 Intact Os_TE_834363 Os_TE_834352 Chr1 29251567 29251568 + RETRO2_LTR 12874 0.0027 (8/2953) 0 * Os_TE_834351 Os_TE_834351 Chr1 29251563 29251562 - RETRO2_LTR 12874 0.0030 (9/2959) 0 * Os_TE_834352 Os_TE_834349 Chr1 29251446 29251447 + OSMAR1 5265 0.0007 (2/2964) 0 * * Os_TE_834340 Chr1 29247085 29247086 - ORSiTERTOOT00074 4935 0.0054 (16/2975) 0 * Os_TE_834339 Os_TE_834339 Chr1 29247081 29247080 + ORSiTERTOOT00074 4935 0.0054 (16/2976) 0 * Os_TE_834340 Os_TE_834331 Chr1 29243641 29243642 + ORSiTERTOOT00296 5553 0.0003 (1/2986) 0 * * Os_TE_834290 Chr1 29227702 29227701 + ORSgTETNOOT00908 242 0.0003 (1/2998) 0 * * Os_TE_834266 Chr1 29216920 29216921 + TWIFB1 3737 0.0003 (1/2894) 0 * * Os_TE_834234 Chr1 29204961 29204962 - INDITTO 263 0.0466 (139/2982) 0 * * Os_TE_834189 Chr1 29186820 29186821 - ORSgTEMT03000007 372 0.7522 (2243/2982) 0 * Os_TE_834188 Os_TE_834188 Chr1 29186811 29186810 + ORSgTEMT03000039 377 0.7491 (2224/2969) 0 * Os_TE_834189 Os_TE_834186 Chr1 29182854 29178754 - OSTE33 1012 0.2482 (743/2993) 1 Intact * Os_TE_834178 Chr1 29177523 29172800 + RETRO2A_LTR 12895 0.2541 (751/2955) 1 Intact Os_TE_834174 Os_TE_834174 Chr1 29172800 29177523 - RETRO1_LTR 8314 0.2536 (751/2961) 1 Intact Os_TE_834178 Os_TE_834158 Chr1 29166506 29166507 - ENSPM4_OS 11610 0.0003 (1/2873) 0 * * Os_TE_834143 Chr1 29162883 29162884 + ORSgTETNOOT00908 242 0.7518 (2242/2982) 0 * * Os_TE_834127 Chr1 29156708 29156709 - MPING 430 0.0003 (1/2989) 0 * Os_TE_834126 Os_TE_834126 Chr1 29156706 29156705 + MPING 430 0.0003 (1/2986) 0 * Os_TE_834127 Os_TE_834121 Chr1 29152194 29152195 - COPIA2-LTR_OS 6433 0.0007 (2/2995) 0 * * Os_TE_834100 Chr1 29144322 29144323 + RIRE2_LTR 11306 0.0475 (140/2945) 0 * Os_TE_834099 Os_TE_834099 Chr1 29144318 29144317 - RIRE2_LTR 11306 0.0512 (152/2970) 0 * Os_TE_834100 Os_TE_834081 Chr1 29140350 29140351 - SZ-22_LTR 4403 0.0003 (1/2984) 0 * Os_TE_834080 Os_TE_834080 Chr1 29140346 29140345 + ORSiTERTOOT00226 792 0.0003 (1/2974) 0 * Os_TE_834081 Os_TE_834071 Chr1 29135460 29135461 + RIRE2_LTR 11306 0.0030 (9/2996) 0 * Os_TE_834070 Os_TE_834070 Chr1 29135456 29135455 - RIRE2_LTR 11306 0.0027 (8/2995) 0 * Os_TE_834071 Os_TE_834055 Chr1 29126618 29126619 - RETROSAT4_LTR 13504 0.0866 (259/2990) 0 * Os_TE_834054 Os_TE_834054 Chr1 29126614 29126613 + RETROSAT4_LTR 13504 0.0517 (149/2882) 0 * Os_TE_834055 Os_TE_834051 Chr1 29125924 29125923 - RETROSAT4_LTR 13504 0.7544 (2242/2972) 0 * * Os_TE_834027 Chr1 29106523 29106524 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * * Os_TE_834024 Chr1 29105992 29105993 - AMYLTP 383 0.0013 (4/2996) 0 * Os_TE_834023 Os_TE_834023 Chr1 29105984 29105983 + AMYLTP 383 0.0017 (5/2997) 0 * Os_TE_834024 Os_TE_834015 Chr1 29104027 29104028 - NDNA1TNA_OS 334 0.0027 (8/2979) 0 * Os_TE_834014 Os_TE_834014 Chr1 29104024 29104023 + NDNA1TNA_OS 334 0.0027 (8/2984) 0 * Os_TE_834015 Os_TE_833925 Chr1 29063890 29063891 + SZ-22_LTR 4403 0.0003 (1/2971) 0 * Os_TE_833924 Os_TE_833924 Chr1 29063886 29063885 - SZ-22_LTR 4403 0.0003 (1/2973) 0 * Os_TE_833925 Os_TE_833894 Chr1 29057228 29057229 + MPING 430 0.0003 (1/2988) 0 * Os_TE_833893 Os_TE_833893 Chr1 29057226 29057225 - MPING 430 0.0003 (1/2992) 0 * Os_TE_833894 Os_TE_833883 Chr1 29048938 29048939 - COPI2_LTR 4733 0.0007 (2/2998) 0 * * Os_TE_833874 Chr1 29046322 29046321 - COPI2_LTR 4733 0.0007 (2/2998) 0 * * Os_TE_833867 Chr1 29044104 29044105 + YOUREN 286 0.7310 (2144/2933) 0 * Os_TE_833866 Os_TE_833866 Chr1 29044102 29044101 - YOUREN 286 0.5821 (1135/1950) 0 * Os_TE_833867 Os_TE_833865 Chr1 29043665 29043666 - CLOUD-7 495 0.0017 (5/2990) 0 * * Os_TE_833823 Chr1 29008130 29012363 - RIRE3A_LTR 10580 0.8740 (763/873) 1 Intact * Os_TE_833816 Chr1 28995850 28998898 - RETROSAT2LTRA 3112 0.8784 (744/847) 1 Intact * Os_TE_833809 Chr1 28993227 28993226 - SZ-35LTR 3853 0.0359 (30/836) 0 * * Os_TE_833805 Chr1 28989699 28989698 + ORSgTEMT00500746 152 0.7244 (2140/2954) 0 * * Os_TE_833802 Chr1 28989143 28989144 - ORSiTERTOOT00385 6000 0.7229 (2124/2938) 0 * * Os_TE_833800 Chr1 28988826 28988506 + ORSgTEMT00100109 321 0.2956 (851/2879) 1 Intact Os_TE_833793 Os_TE_833793 Chr1 28988506 28988822 + ORSgTEMT00101116 321 0.2824 (840/2975) 1 Intact Os_TE_833800 Os_TE_833789 Chr1 28987155 28986861 + ORSgTEMT00101588 319 0.2773 (799/2881) 1 Intact * Os_TE_833741 Chr1 28964950 28964949 - NDNA1TNA_OS 334 0.0003 (1/2992) 0 * * Os_TE_833740 Chr1 28964382 28964383 - NDNA1TNA_OS 334 0.0003 (1/2987) 0 * * Os_TE_833738 Chr1 28964254 28964255 - STOWAWAY51_OS 246 0.0003 (1/2929) 0 * * Os_TE_833724 Chr1 28959118 28959119 - ORSgTEMT01701236 147 0.0004 (1/2832) 0 * * Os_TE_833712 Chr1 28954716 28954715 - ORSgTETNOOT02565 240 0.0554 (165/2980) 0 * * Os_TE_833678 Chr1 28948689 28948929 + ORSgTEMT00901178 234 0.3131 (935/2986) 1 Intact * Os_TE_833671 Chr1 28943818 28943819 + MPING 430 0.0007 (2/2974) 0 * Os_TE_833670 Os_TE_833670 Chr1 28943816 28943815 - MPING 430 0.0007 (2/2983) 0 * Os_TE_833671 Os_TE_833654 Chr1 28937077 28937078 - ORSgTETNOOT01871 245 0.0013 (4/2994) 0 * Os_TE_833653 Os_TE_833653 Chr1 28937076 28937075 - STOWAWAY17_OS 259 0.0017 (5/2995) 0 * Os_TE_833654 Os_TE_833651 Chr1 28935997 28935998 + STOWAWAY51_OS 246 0.0003 (1/2997) 0 * * Os_TE_833650 Chr1 28935845 28935846 + ORSgTETNOOT00908 242 0.0823 (246/2989) 0 * * Os_TE_833649 Chr1 28935010 28935011 - SZ-55_LTR 10318 0.0017 (5/2997) 0 * Os_TE_833648 Os_TE_833648 Chr1 28935006 28935005 + SZ-55_LTR 10318 0.0017 (5/2997) 0 * Os_TE_833649 Os_TE_833639 Chr1 28930271 28930272 - RETROSAT2LTR 12796 0.0017 (5/2954) 0 * Os_TE_833638 Os_TE_833638 Chr1 28930269 28930268 + RETROSAT2LTR 12796 0.0013 (4/2988) 0 * Os_TE_833639 Os_TE_833614 Chr1 28926979 28926980 - INDITTO 263 0.0319 (95/2975) 0 * Os_TE_833613 Os_TE_833613 Chr1 28926977 28926976 + ORSgTETNOOT02316 263 0.0332 (99/2983) 0 * Os_TE_833614 Os_TE_833601 Chr1 28924263 28924264 + NDNA1TNA_OS 334 0.0003 (1/2998) 0 * Os_TE_833600 Os_TE_833600 Chr1 28924261 28924260 - NDNA1TNA_OS 334 0.0003 (1/2995) 0 * Os_TE_833601 Os_TE_833583 Chr1 28913693 28913694 - RETRO2_LTR 12874 0.6467 (1920/2969) 0 * Os_TE_833582 Os_TE_833582 Chr1 28913689 28913688 + RETRO2_LTR 12874 0.6485 (1935/2984) 0 * Os_TE_833583 Os_TE_833575 Chr1 28910153 28910154 - OSTE24 683 0.0027 (8/2996) 0 * Os_TE_833574 Os_TE_833574 Chr1 28910142 28910141 - OSTE24 683 0.0027 (8/2993) 0 * Os_TE_833575 Os_TE_833563 Chr1 28909457 28909456 - DITTO-2 235 0.0003 (1/2984) 0 * * Os_TE_833557 Chr1 28908647 28908648 - ORSiTERTOOT00404 4839 0.0634 (190/2999) 0 * Os_TE_833556 Os_TE_833556 Chr1 28908643 28908642 + ORSiTERTOOT00404 4839 0.0627 (188/2998) 0 * Os_TE_833557 Os_TE_833539 Chr1 28904922 28904921 - COPI2_LTR 4733 0.0003 (1/2875) 0 * * Os_TE_833509 Chr1 28885112 28885113 + AMYLTP 383 0.0686 (201/2928) 0 * Os_TE_833508 Os_TE_833508 Chr1 28885104 28885103 - AMYLTP 383 0.0540 (156/2891) 0 * Os_TE_833509 Os_TE_833486 Chr1 28873432 28873433 + COPIA2-LTR_OS 6433 0.0007 (2/2990) 0 * * Os_TE_833440 Chr1 28851474 28851475 - INDITTO 263 0.0010 (3/2992) 0 * * Os_TE_833427 Chr1 28849832 28849831 + ORSgTETNOOT00032 218 0.0003 (1/2989) 0 * * Os_TE_833410 Chr1 28834806 28834807 + COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_833409 Os_TE_833409 Chr1 28834802 28834801 - COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_833410 Os_TE_833396 Chr1 28824205 28824206 - AMYLTP 383 0.5672 (1693/2985) 0 * Os_TE_833395 Os_TE_833395 Chr1 28824197 28824196 + AMYLTP 383 0.5541 (1624/2931) 0 * Os_TE_833396 Os_TE_833382 Chr1 28821189 28821190 - OSMUD1 5028 0.0003 (1/2919) 0 * * Os_TE_833342 Chr1 28811267 28811268 - TYPEM 227 0.0013 (4/2973) 0 * Os_TE_833341 Os_TE_833341 Chr1 28811266 28811265 - ORSgTEMT02400179 221 0.0013 (4/2971) 0 * Os_TE_833342 Os_TE_833288 Chr1 28773402 28773403 + RETROSAT2LTR 12796 0.0003 (1/2955) 0 * Os_TE_833287 Os_TE_833287 Chr1 28773400 28773399 - RETROSAT2LTR 12796 0.0010 (3/2950) 0 * Os_TE_833288 Os_TE_833284 Chr1 28771849 28771850 - COPI2_LTR 4733 0.0007 (2/2914) 0 * Os_TE_833283 Os_TE_833283 Chr1 28771845 28771844 + COPI2_LTR 4733 0.0003 (1/2927) 0 * Os_TE_833284 Os_TE_833278 Chr1 28770516 28770517 - ORSgTETNOOT00908 242 0.0013 (4/2980) 0 * Os_TE_833277 Os_TE_833277 Chr1 28770514 28770513 + ORSgTETNOOT00908 242 0.0013 (4/2982) 0 * Os_TE_833278 Os_TE_833257 Chr1 28764267 28764266 - INDITTO 263 0.0003 (1/2984) 0 * * Os_TE_833255 Chr1 28762522 28762523 - RETROSAT3_LTR 11537 0.0003 (1/2965) 0 * Os_TE_833254 Os_TE_833254 Chr1 28762518 28762517 + RETROSAT2LTRA 3112 0.0003 (1/2965) 0 * Os_TE_833255 Os_TE_833253 Chr1 28762381 28762380 + RIREX_LTR 8828 0.0003 (1/2982) 0 * Os_TE_833252 Os_TE_833252 Chr1 28762373 28762374 - RIREX_LTR 8828 0.0003 (1/2983) 0 * Os_TE_833253 Os_TE_833242 Chr1 28761229 28761132 - F804 170 0.2660 (767/2884) 1 Intact Os_TE_833241 Os_TE_833241 Chr1 28761132 28761229 + F804 170 0.2510 (721/2873) 1 Intact Os_TE_833242 Os_TE_833234 Chr1 28759366 28759365 + TWIFBIG 3567 0.0003 (1/2969) 0 * * Os_TE_833233 Chr1 28758878 28758877 - COPIA2-LTR_OS 6433 0.0013 (4/2994) 0 * Os_TE_833232 Os_TE_833232 Chr1 28758861 28758862 - TRUNCATOR2_LTR 2904 0.0013 (4/2995) 0 * Os_TE_833233 Os_TE_833231 Chr1 28758684 28758685 - INDITTO 263 0.0013 (4/2999) 0 * * Os_TE_833226 Chr1 28756812 28756813 - TYPEH 309 0.0004 (1/2835) 0 * * Os_TE_833205 Chr1 28745626 28745627 - RIREX_LTR 8828 0.0007 (2/2991) 0 * Os_TE_833204 Os_TE_833204 Chr1 28745622 28745621 + RIREX_LTR 8828 0.0007 (2/2992) 0 * Os_TE_833205 Os_TE_833193 Chr1 28739748 28739747 + ORSgTEMT00500560 148 0.0003 (1/2908) 0 * * Os_TE_833180 Chr1 28733596 28733597 + ORSiTERTOOT00381 4988 0.0007 (2/2989) 0 * Os_TE_833179 Os_TE_833179 Chr1 28733592 28733591 - SC-8_LTR 4951 0.0007 (2/2990) 0 * Os_TE_833180 Os_TE_833171 Chr1 28728132 28728133 - NDNA2TNA_OS 346 0.0027 (8/2994) 0 * * Os_TE_833170 Chr1 28727939 28727940 + TWIFBIG 3567 0.0003 (1/2993) 0 * * Os_TE_833125 Chr1 28711521 28711520 + RETRO2A_LTR 12895 0.0003 (1/2993) 0 * * Os_TE_833115 Chr1 28709187 28709188 - ORSgTEMT02000041 194 0.0003 (1/2997) 0 * * Os_TE_833108 Chr1 28708263 28708264 - CACTA-Q 2268 0.0003 (1/2988) 0 * * Os_TE_833106 Chr1 28707960 28707961 - ORSgTEMT00600524 364 0.1969 (588/2986) 0 * Os_TE_833105 Os_TE_833105 Chr1 28707958 28707957 + ORSgTEMT00600272 361 0.1995 (596/2987) 0 * Os_TE_833106 Os_TE_833104 Chr1 28705449 28705450 + ORSiTERTOOT00020 2547 0.0003 (1/2977) 0 * Os_TE_833103 Os_TE_833103 Chr1 28705445 28705444 - OSCOPIA1_LTR 4754 0.0003 (1/2986) 0 * Os_TE_833104 Os_TE_833084 Chr1 28688227 28688228 + ORSiTERTOOT00381 4988 0.0030 (9/2982) 0 * Os_TE_833083 Os_TE_833083 Chr1 28688223 28688222 - SC-8_LTR 4951 0.0027 (8/2987) 0 * Os_TE_833084 Os_TE_833051 Chr1 28677798 28677799 + SC-8_LTR 4951 0.0003 (1/2986) 0 * Os_TE_833050 Os_TE_833050 Chr1 28677794 28677793 - SC-8_LTR 4951 0.0003 (1/2986) 0 * Os_TE_833051 Os_TE_833048 Chr1 28675410 28675411 - ORSgTEMT00600484 344 0.0003 (1/2996) 0 * * Os_TE_833037 Chr1 28668864 28668556 - OLO24 345 0.2708 (804/2969) 1 Intact Os_TE_833033 Os_TE_833033 Chr1 28668549 28668864 + OLO24 345 0.2743 (821/2993) 1 Intact Os_TE_833037 Os_TE_833029 Chr1 28665754 28665755 - SC-8_LTR 4951 0.0007 (2/2987) 0 * Os_TE_833028 Os_TE_833028 Chr1 28665750 28665749 + SC-8_LTR 4951 0.0007 (2/2991) 0 * Os_TE_833029 Os_TE_833017 Chr1 28662615 28662614 + ORSgTEMT01601591 242 0.0003 (1/2980) 0 * * Os_TE_832999 Chr1 28656133 28656132 + TWIFB1 3737 0.0017 (5/2948) 0 * * Os_TE_832994 Chr1 28653743 28653744 - CASTAWAY 364 0.0003 (1/2988) 0 * Os_TE_832993 Os_TE_832993 Chr1 28653740 28653739 - ORSgTEMT00600304 361 0.0003 (1/2985) 0 * Os_TE_832994 Os_TE_832989 Chr1 28652602 28652603 - MERMITED 1572 0.0003 (1/2993) 0 * * Os_TE_832982 Chr1 28650686 28650685 - TEMPINDAS 4259 0.0027 (8/2976) 0 * * Os_TE_832979 Chr1 28649084 28649085 + AMYLTP 383 0.0010 (3/2959) 0 * Os_TE_832978 Os_TE_832978 Chr1 28649076 28649075 - AMYLTP 383 0.0010 (3/2967) 0 * Os_TE_832979 Os_TE_832951 Chr1 28638386 28638387 - AMYLTP 383 0.0010 (3/2941) 0 * Os_TE_832950 Os_TE_832950 Chr1 28638378 28638377 + AMYLTP 383 0.0013 (4/2991) 0 * Os_TE_832951 Os_TE_832929 Chr1 28630689 28630688 - MUDRN3_OS 903 0.0017 (5/2995) 0 * * Os_TE_832926 Chr1 28628492 28628491 + DS-RICE2N 613 0.0003 (1/2957) 0 * * Os_TE_832896 Chr1 28621179 28621178 - SZ-22_LTR 4403 0.0009 (2/2327) -1 * * Os_TE_832895 Chr1 28619614 28619615 - HARB-1_OS 5166 0.0003 (1/2995) 0 * Os_TE_832894 Os_TE_832894 Chr1 28619612 28619611 + HARB-1_OS 5166 0.0003 (1/2993) 0 * Os_TE_832895 Os_TE_832875 Chr1 28615722 28615723 + COPI2_LTR 4733 0.0003 (1/2980) 0 * Os_TE_832874 Os_TE_832874 Chr1 28615718 28615717 - COPI2_LTR 4733 0.0003 (1/2981) 0 * Os_TE_832875 Os_TE_832873 Chr1 28615709 28615710 + ORSgTETNOOT01930 140 0.0013 (4/2987) 0 * Os_TE_832872 Os_TE_832872 Chr1 28615707 28615706 - ORSgTETNOOT00623 140 0.0017 (5/2983) 0 * Os_TE_832873 Os_TE_832870 Chr1 28615617 28615616 - OLO24 345 0.0003 (1/2984) 0 * * Os_TE_832868 Chr1 28612979 28612980 - FOCUS 257 0.0073 (22/2994) 0 * * Os_TE_832859 Chr1 28611768 28611769 + INDITTO 263 0.0013 (4/2995) 0 * Os_TE_832858 Os_TE_832858 Chr1 28611766 28611765 - INDITTO 263 0.0013 (4/2992) 0 * Os_TE_832859 Os_TE_832857 Chr1 28609728 28609727 + NDNA1TNA_OS 334 0.0003 (1/2996) 0 * Os_TE_832856 Os_TE_832856 Chr1 28609723 28609724 - NDNA1TNA_OS 334 0.0003 (1/2928) 0 * Os_TE_832857 Os_TE_832846 Chr1 28603879 28603878 - SZ-22_LTR 4403 0.0003 (1/2999) 0 * * Os_TE_832837 Chr1 28600585 28600586 - ORSgTERT00201216 11284 0.0007 (2/2962) 0 * Os_TE_832836 Os_TE_832836 Chr1 28600581 28600580 - RIRE2_LTR 11306 0.0007 (2/2997) 0 * Os_TE_832837 Os_TE_832835 Chr1 28600566 28600567 - RIREX_LTR 8828 0.0662 (198/2993) 0 * Os_TE_832834 Os_TE_832834 Chr1 28600562 28600561 + RIREX_LTR 8828 0.0675 (202/2994) 0 * Os_TE_832835 Os_TE_832833 Chr1 28600283 28600284 - ORSgTETN00200001 10994 0.0027 (8/2997) 0 * Os_TE_832832 Os_TE_832832 Chr1 28600281 28600280 + SPMLIKE 10989 0.0027 (8/2996) 0 * Os_TE_832833 Os_TE_832830 Chr1 28597982 28597983 - MPING 430 0.0003 (1/2988) 0 * * Os_TE_832828 Chr1 28596125 28596126 - COPIA2-LTR_OS 6433 0.0013 (4/2998) 0 * Os_TE_832827 Os_TE_832827 Chr1 28596121 28596120 + COPIA2-LTR_OS 6433 0.0013 (4/2999) 0 * Os_TE_832828 Os_TE_832823 Chr1 28593722 28593723 - HARB-1_OS 5166 0.0575 (172/2993) 0 * * Os_TE_832820 Chr1 28591380 28591381 - NDNA1TNA_OS 334 0.0699 (209/2991) 0 * * Os_TE_832787 Chr1 28575606 28575605 + ORSgTEMT00700017 386 0.0193 (58/3000) 0 * * Os_TE_832785 Chr1 28575423 28575424 - COPIA2-LTR_OS 6433 0.0010 (3/2992) 0 * Os_TE_832784 Os_TE_832784 Chr1 28575419 28575418 + COPIA2-LTR_OS 6433 0.0010 (3/2992) 0 * Os_TE_832785 Os_TE_832771 Chr1 28566328 28566329 - ORSgTERT00201216 11284 0.2308 (690/2989) 0 * * Os_TE_832769 Chr1 28565984 28565985 - COPI2_LTR 4733 0.0003 (1/2985) 0 * Os_TE_832768 Os_TE_832768 Chr1 28565980 28565979 + COPI2_LTR 4733 0.0003 (1/2992) 0 * Os_TE_832769 Os_TE_832765 Chr1 28564908 28564909 - AMYLTP 383 0.1337 (398/2976) 0 * Os_TE_832764 Os_TE_832764 Chr1 28564900 28564899 + AMYLTP 383 0.1344 (402/2992) 0 * Os_TE_832765 Os_TE_832728 Chr1 28548774 28548775 + ORSiTERTOOT00296 5553 0.0047 (14/2982) 0 * Os_TE_832727 Os_TE_832727 Chr1 28548770 28548769 - SC-3_LTR 5748 0.0050 (15/2981) 0 * Os_TE_832728 Os_TE_832713 Chr1 28539684 28539683 + OSTE18 129 0.0554 (166/2999) 0 * Os_TE_832712 Os_TE_832712 Chr1 28539643 28539644 + TYPEU4 402 0.0558 (167/2993) 0 * Os_TE_832713 Os_TE_832711 Chr1 28538738 28538739 + ORSgTEMT00900266 245 0.0555 (166/2992) 0 * * Os_TE_832702 Chr1 28534973 28534759 - ORSgTEMT00900498 242 0.4845 (1449/2991) 0.91 Intact Os_TE_832700 Os_TE_832700 Chr1 28534754 28534959 - ORSgTEMT00901138 254 0.4851 (1445/2979) 0.92 Intact Os_TE_832702 Os_TE_832688 Chr1 28531434 28531433 - NDNA1TNA_OS 334 0.0007 (2/2970) 0 * * Os_TE_832672 Chr1 28526182 28526183 - ORSgTEMT00500675 140 0.1188 (172/1448) 0 * * Os_TE_832649 Chr1 28519148 28519149 + RETRO1_LTR 8314 0.0277 (19/686) 0 * Os_TE_832648 Os_TE_832648 Chr1 28519144 28519143 - RETRO1_LTR 8314 0.0083 (18/2159) 0 * Os_TE_832649 Os_TE_832637 Chr1 28512652 28512653 - ENSPM4_OS 11610 0.0086 (19/2217) 0 * * Os_TE_832634 Chr1 28511225 28511226 - MUDROS1 4932 0.7140 (1605/2248) 0 * * Os_TE_832616 Chr1 28504291 28503641 + SINE03_OS 360 0.2982 (673/2257) 1 Intact * Os_TE_832614 Chr1 28501885 28501884 - ORSgTEMT00100799 337 0.4146 (1228/2962) 0 * * Os_TE_832607 Chr1 28500871 28501222 + ORSgTEMT00600502 360 0.6799 (854/1256) 0.75 Intact * Os_TE_832595 Chr1 28498422 28498423 - RIRE2_LTR 11306 0.1666 (479/2876) 0 * Os_TE_832594 Os_TE_832594 Chr1 28498418 28498417 - ORSgTERT00201216 11284 0.1684 (471/2797) 0 * Os_TE_832595 Os_TE_832593 Chr1 28498345 28498228 + ORSgTEMT01701356 184 0.3215 (895/2784) 1 Intact * Os_TE_832588 Chr1 28497311 28497312 - CACTA-F 1118 0.7043 (2044/2902) 0 * * Os_TE_832585 Chr1 28494697 28494698 - ORSgTEMT01702186 155 0.0289 (86/2979) 0 * * Os_TE_832583 Chr1 28494541 28494542 + COPIA2-LTR_OS 6433 0.0015 (3/1998) 0 * Os_TE_832582 Os_TE_832582 Chr1 28494537 28494536 - COPIA2-LTR_OS 6433 0.0010 (3/2882) 0 * Os_TE_832583 Os_TE_832581 Chr1 28494515 28494148 - ORSgTEMT04800063 360 0.2054 (602/2931) 1 Intact Os_TE_832579 Os_TE_832579 Chr1 28494147 28494515 + ORSgTEMT04800085 366 0.2038 (598/2934) 1 Intact Os_TE_832581 Os_TE_832577 Chr1 28493079 28493078 + NDNA1TNA_OS 334 0.0080 (24/2993) 0 * * Os_TE_832575 Chr1 28491792 28491430 - ORSgTEMT00600085 364 0.3416 (1023/2995) 1 Intact * Os_TE_832555 Chr1 28486052 28486053 + COPI2_LTR 4733 0.0003 (1/2985) 0 * Os_TE_832554 Os_TE_832554 Chr1 28486048 28486047 - COPI2_LTR 4733 0.0003 (1/2991) 0 * Os_TE_832555 Os_TE_832549 Chr1 28478531 28478532 - MPING 430 0.0003 (1/2978) 0 * Os_TE_832548 Os_TE_832548 Chr1 28478529 28478528 + MPING 430 0.0003 (1/2978) 0 * Os_TE_832549 Os_TE_832531 Chr1 28473526 28473527 - INDITTO 263 0.0142 (42/2948) 0 * * Os_TE_832512 Chr1 28467815 28467814 + ORSiTERTOOT00034 791 0.0007 (2/2984) 0 * * Os_TE_832510 Chr1 28466171 28466172 - RIREX_LTR 8828 0.0027 (8/2974) 0 * Os_TE_832509 Os_TE_832509 Chr1 28466167 28466166 + RIREX_LTR 8828 0.0024 (7/2975) 0 * Os_TE_832510 Os_TE_832506 Chr1 28463180 28463181 - RIREX_LTR 8828 0.0003 (1/2991) 0 * Os_TE_832505 Os_TE_832505 Chr1 28463176 28463175 + RIREX_LTR 8828 0.0003 (1/2986) 0 * Os_TE_832506 Os_TE_832492 Chr1 28461912 28461911 + ORSgTEMT01601591 242 0.0328 (98/2984) 0 * Os_TE_832491 Os_TE_832491 Chr1 28461906 28461907 + STOWAWAY51_OS 246 0.0351 (105/2989) 0 * Os_TE_832492 Os_TE_832458 Chr1 28446589 28446590 + RETROSAT2LTR 12796 0.0003 (1/2999) 0 * Os_TE_832457 Os_TE_832457 Chr1 28446587 28446586 - RETROSAT2LTR 12796 0.0003 (1/2999) 0 * Os_TE_832458 Os_TE_832456 Chr1 28446527 28446528 - ORSiTERTOOT00366 5449 0.0680 (204/2999) 0 * * Os_TE_832434 Chr1 28438374 28438373 - ORSgTEMT02400246 177 0.0054 (16/2962) 0 * * Os_TE_832433 Chr1 28437847 28437848 + STOWAWAY51_OS 246 0.0003 (1/2997) 0 * * Os_TE_832424 Chr1 28436995 28436383 - DS-RICE2N 613 0.2799 (830/2965) -1 Intact Os_TE_832421 Os_TE_832421 Chr1 28436383 28436995 + DS-RICE2N 613 0.2776 (822/2961) 1 Intact Os_TE_832424 Os_TE_832420 Chr1 28436355 28436356 + COPIA2-LTR_OS 6433 0.0013 (4/2967) 0 * Os_TE_832419 Os_TE_832419 Chr1 28436351 28436350 - COPIA2-LTR_OS 6433 0.0018 (5/2745) 0 * Os_TE_832420 Os_TE_832418 Chr1 28436277 28436278 + TRUNCATOR2_LTR 2904 0.0003 (1/2956) 0 * * Os_TE_832413 Chr1 28435633 28435632 - STOWAWAY51_OS 246 0.0060 (18/2991) 0 * Os_TE_832412 Os_TE_832412 Chr1 28435627 28435628 + STOWAWAY51_OS 246 0.0060 (18/2994) 0 * Os_TE_832413 Os_TE_832410 Chr1 28433866 28433867 - NDNA2TNA_OS 346 0.7281 (2172/2983) 0 * * Os_TE_832408 Chr1 28433175 28433176 - RIREX_LTR 8828 0.0007 (2/2957) 0 * * Os_TE_832377 Chr1 28419242 28419243 - NDNA1TNA_OS 334 0.1403 (403/2872) 0 * * Os_TE_832369 Chr1 28415796 28415797 + RETRO1_LTR 8314 0.0051 (15/2921) 0 * Os_TE_832368 Os_TE_832368 Chr1 28415792 28415791 - RETRO1_LTR 8314 0.0051 (15/2914) 0 * Os_TE_832369 Os_TE_832357 Chr1 28413797 28413798 + TWIFBIG 3567 0.0030 (9/2995) 0 * Os_TE_832356 Os_TE_832356 Chr1 28413790 28413789 - ORSiTETNOOT00216 3569 0.0030 (9/2996) 0 * Os_TE_832357 Os_TE_832324 Chr1 28403047 28403048 - COPI2_LTR 4733 0.0003 (1/2993) 0 * * Os_TE_832313 Chr1 28399074 28399073 - DS-RICE4N 715 0.0004 (1/2718) 0 * * Os_TE_832300 Chr1 28395125 28395126 - SZ-35LTR 3853 0.0024 (7/2971) 0 * Os_TE_832299 Os_TE_832299 Chr1 28395121 28395120 + RETROSAT4_LTR 13504 0.0027 (8/2982) 0 * Os_TE_832300 Os_TE_832298 Chr1 28395072 28395071 - ORSgTEMT00900005 240 0.0003 (1/2979) 0 * * Os_TE_832285 Chr1 28391483 28391484 - SZ-55_LTR 10318 0.0007 (2/2991) 0 * Os_TE_832284 Os_TE_832284 Chr1 28391479 28391478 + SZ-55_LTR 10318 0.0010 (3/2990) 0 * Os_TE_832285 Os_TE_832282 Chr1 28391249 28391250 - SC-8_LTR 4951 0.0003 (1/2994) 0 * Os_TE_832281 Os_TE_832281 Chr1 28391245 28391244 + SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_832282 Os_TE_832266 Chr1 28382869 28382868 + SPMLIKE 10989 0.1985 (594/2992) 0 * * Os_TE_832264 Chr1 28381674 28381675 + OLO24 345 0.0013 (4/2999) 0 * * Os_TE_832258 Chr1 28380742 28380743 + F569 228 0.0017 (5/2974) 0 * * Os_TE_832257 Chr1 28379382 28379383 - COPI2_LTR 4733 0.0005 (1/2179) 0 * Os_TE_832256 Os_TE_832256 Chr1 28379378 28379377 + COPI2_LTR 4733 0.0005 (1/2163) 0 * Os_TE_832257 Os_TE_832255 Chr1 28378917 28378916 - STOWAWAY9_OS 235 0.0028 (4/1451) 0 * * Os_TE_832251 Chr1 28377756 28377755 + ORSgTEMT01601934 207 0.0017 (5/2994) 0 * Os_TE_832250 Os_TE_832250 Chr1 28377753 28377754 - ORSgTEMT01601493 303 0.0017 (5/2997) 0 * Os_TE_832251 Os_TE_832169 Chr1 28356660 28356659 - INDITTO 263 0.2028 (572/2821) 0 * * Os_TE_832167 Chr1 28356580 28356579 + NDNA2TNA_OS 346 0.0004 (1/2753) 0 * * Os_TE_832161 Chr1 28356125 28356387 - INDITTO 263 0.2710 (806/2974) 1 Intact * Os_TE_832149 Chr1 28351570 28351571 - ORSiTERTOOT00329 5144 0.1875 (562/2997) 0 * Os_TE_832148 Os_TE_832148 Chr1 28351563 28351562 + ORSiTERTOOT00329 5144 0.1757 (521/2966) 0 * Os_TE_832149 Os_TE_832066 Chr1 28319047 28319048 + SETARIA1 1293 0.2207 (654/2963) 0 * Os_TE_832065 Os_TE_832065 Chr1 28319041 28319040 + SETARIA2 1142 0.2334 (699/2995) 0 * Os_TE_832066 Os_TE_832064 Chr1 28318036 28318952 - CLOUD-7 495 0.7475 (974/1303) 1 Intact * Os_TE_831988 Chr1 28292036 28292146 + OSTE18 129 0.2636 (788/2989) 1 Intact * Os_TE_831975 Chr1 28277527 28277528 + ORSgTEMT00101148 265 0.0005 (1/2146) 0 * * Os_TE_831958 Chr1 28267530 28267531 + SC-8_LTR 4951 0.0019 (5/2676) 0 * Os_TE_831957 Os_TE_831957 Chr1 28267526 28267525 - SC-8_LTR 4951 0.0019 (4/2160) 0 * Os_TE_831958 Os_TE_831947 Chr1 28260731 28260732 + ORSgTETNOOT01313 249 0.0003 (1/2991) 0 * Os_TE_831946 Os_TE_831946 Chr1 28260723 28260722 + ORSgTETNOOT01686 252 0.0003 (1/2991) 0 * Os_TE_831947 Os_TE_831935 Chr1 28256095 28256096 - COPI2_LTR 4733 0.2789 (803/2879) 0 * Os_TE_831934 Os_TE_831934 Chr1 28256091 28256090 + COPI2_LTR 4733 0.3028 (895/2956) 0 * Os_TE_831935 Os_TE_831892 Chr1 28241203 28241204 + COPIA2-LTR_OS 6433 0.0003 (1/2972) 0 * Os_TE_831891 Os_TE_831891 Chr1 28241199 28241198 - COPIA2-LTR_OS 6433 0.0003 (1/2975) 0 * Os_TE_831892 Os_TE_831882 Chr1 28238066 28238065 - COPIA2-LTR_OS 6433 0.0003 (1/2986) 0 * * Os_TE_831868 Chr1 28223448 28223449 - RIREX_LTR 8828 0.0003 (1/2905) 0 * * Os_TE_831820 Chr1 28199964 28199965 - ORSgTERT00201216 11284 0.0912 (271/2972) 0 * * Os_TE_831776 Chr1 28179672 28179671 - SZ-5LTR 1223 0.0016 (4/2568) 0 * * Os_TE_831770 Chr1 28171071 28171072 + NDNA1TNA_OS 334 0.0017 (5/2994) 0 * Os_TE_831769 Os_TE_831769 Chr1 28171069 28171068 - NDNA1TNA_OS 334 0.0020 (6/2997) 0 * Os_TE_831770 Os_TE_831740 Chr1 28158607 28158606 - ORSgTETN00200001 10994 0.0775 (225/2902) 0 * Os_TE_831739 Os_TE_831739 Chr1 28158606 28158607 + CACTA-B 1103 0.0965 (285/2953) 0 * Os_TE_831740 Os_TE_831726 Chr1 28155147 28155146 - ORSgTEMT00900563 246 0.0017 (5/2993) 0 * Os_TE_831725 Os_TE_831725 Chr1 28155143 28155144 - ORSgTEMT00900099 250 0.0013 (4/2994) 0 * Os_TE_831726 Os_TE_831707 Chr1 28148554 28148555 - INDITTO 263 0.0235 (68/2899) 0 * * Os_TE_831705 Chr1 28148535 28148536 - RIRE2_LTR 11306 0.0968 (290/2995) 0 * Os_TE_831704 Os_TE_831704 Chr1 28148531 28148530 - ORSgTERT00201216 11284 0.0994 (296/2978) 0 * Os_TE_831705 Os_TE_831696 Chr1 28147282 28147283 - CLOUD 734 0.0024 (7/2972) 0 * Os_TE_831695 Os_TE_831695 Chr1 28147274 28147273 - CLOUD 734 0.0024 (7/2976) 0 * Os_TE_831696 Os_TE_831694 Chr1 28147107 28147108 + ORSgTETNOOT01219 231 0.0037 (11/2994) 0 * * Os_TE_831693 Chr1 28146548 28146549 - ORSiTERTOOT00404 4839 0.5254 (1573/2994) 0 * * Os_TE_831682 Chr1 28143381 28143380 - STOWAWAY51_OS 246 0.0003 (1/2992) 0 * * Os_TE_831681 Chr1 28143348 28143347 + NDNA2TNA_OS 346 0.5232 (1567/2995) 0 * Os_TE_831680 Os_TE_831680 Chr1 28143338 28143339 - NDNA2TNA_OS 346 0.5222 (1563/2993) 0 * Os_TE_831681 Os_TE_831676 Chr1 28136341 28136342 + TWIF 586 0.0003 (1/2970) 0 * Os_TE_831675 Os_TE_831675 Chr1 28136334 28136333 - ORSiTETNOOT00134 607 0.0003 (1/2971) 0 * Os_TE_831676 Os_TE_831644 Chr1 28123735 28123736 - RETROSAT2LTR 12796 0.0013 (4/2970) 0 * Os_TE_831643 Os_TE_831643 Chr1 28123733 28123732 + GYPSY-A_LTR 8951 0.0013 (4/2975) 0 * Os_TE_831644 Os_TE_831610 Chr1 28109263 28109264 + CASTAWAY 364 0.6829 (1751/2564) 0 * Os_TE_831609 Os_TE_831609 Chr1 28109261 28109260 + ORSgTEMT00600124 361 0.7188 (2101/2923) 0 * Os_TE_831610 Os_TE_831600 Chr1 28107849 28107850 + ORSgTETNOOT01219 231 0.0003 (1/2977) 0 * Os_TE_831599 Os_TE_831599 Chr1 28107843 28107842 + ORSgTETNOOT00908 242 0.0003 (1/2980) 0 * Os_TE_831600 Os_TE_831596 Chr1 28106908 28106907 - MPING 430 0.0003 (1/2998) 0 * * Os_TE_831575 Chr1 28098791 28098792 - ORSgTEMT00600085 364 0.0007 (2/2991) 0 * Os_TE_831574 Os_TE_831574 Chr1 28098789 28098788 + ORSgTEMT00600502 360 0.0007 (2/2987) 0 * Os_TE_831575 Os_TE_831570 Chr1 28090650 28090649 + ORSiTERTOOT00074 4935 0.0007 (2/2931) 0 * * Os_TE_831565 Chr1 28090061 28090062 - ORSgTEMT00400010 151 0.0003 (1/2951) 0 * * Os_TE_831562 Chr1 28088569 28088570 + ORSgTETNOOT00908 242 0.0020 (6/2989) 0 * * Os_TE_831528 Chr1 28069519 28069518 + SZ-46LTR 3360 0.0007 (2/2906) 0 * * Os_TE_831526 Chr1 28069359 28069360 + SZ-49 5594 0.0024 (7/2954) 0 * Os_TE_831525 Os_TE_831525 Chr1 28069355 28069354 - SZLTR 1249 0.0024 (7/2950) 0 * Os_TE_831526 Os_TE_831523 Chr1 28069037 28069038 - SUSU 279 0.0017 (5/2981) 0 * Os_TE_831522 Os_TE_831522 Chr1 28069035 28069034 + ORSgTEMT05000092 279 0.0017 (5/2987) 0 * Os_TE_831523 Os_TE_831494 Chr1 28050831 28050832 + RETRO2_LTR 12874 0.1772 (531/2996) 0 * * Os_TE_831485 Chr1 28035991 28048883 + ORSgTERTOOT00009 12852 0.2524 (755/2991) 1 Intact * Os_TE_831480 Chr1 28032334 28032335 + ORSgTEMT04600037 279 0.0017 (5/2995) 0 * * Os_TE_831456 Chr1 28026791 28026790 + STOWAWAY21_OS 243 0.0018 (5/2824) 0 * Os_TE_831455 Os_TE_831455 Chr1 28026790 28026791 + ORSgTEMT01601122 212 0.0023 (7/2998) 0 * Os_TE_831456 Os_TE_831428 Chr1 28016739 28016738 + SZ-50_LTR 11691 0.0003 (1/2998) 0 * * Os_TE_831425 Chr1 28015968 28015969 + INDITTO 263 0.6230 (1854/2976) 0 * Os_TE_831424 Os_TE_831424 Chr1 28015966 28015965 - INDITTO 263 0.6189 (1851/2991) 0 * Os_TE_831425 Os_TE_831420 Chr1 28015022 28015023 - INDITTO 263 0.7232 (2163/2991) 0 * Os_TE_831419 Os_TE_831419 Chr1 28015020 28015019 + INDITTO 263 0.7211 (2154/2987) 0 * Os_TE_831420 Os_TE_831418 Chr1 28015013 28015014 + ORSgTETNOOT00221 261 0.7230 (2164/2993) 0 * * Os_TE_831400 Chr1 28006251 28006252 + MPING 430 0.0003 (1/2928) 0 * Os_TE_831399 Os_TE_831399 Chr1 28006249 28006248 - MPING 430 0.0003 (1/2922) 0 * Os_TE_831400 Os_TE_831396 Chr1 28002073 28002074 + RIREX_LTR 8828 0.0003 (1/2988) 0 * Os_TE_831395 Os_TE_831395 Chr1 28002069 28002068 - RIREX_LTR 8828 0.0003 (1/2988) 0 * Os_TE_831396 Os_TE_831390 Chr1 28000313 28000314 - TELIA 141 0.0007 (2/2961) 0 * Os_TE_831389 Os_TE_831389 Chr1 28000305 28000304 + TELIA 141 0.0010 (3/2959) 0 * Os_TE_831390 Os_TE_831362 Chr1 27982813 27982814 + COPIA2-LTR_OS 6433 0.0003 (1/2978) 0 * Os_TE_831361 Os_TE_831361 Chr1 27982809 27982808 - COPIA2-LTR_OS 6433 0.0003 (1/2975) 0 * Os_TE_831362 Os_TE_831352 Chr1 27980589 27980312 - SUSU 279 0.2445 (725/2965) 1 Intact Os_TE_831351 Os_TE_831351 Chr1 27980312 27980589 + ORSgTEMT05000092 279 0.2454 (727/2962) 1 Intact Os_TE_831352 Os_TE_831330 Chr1 27971517 27970560 - COPIA2-LTR_OS 6433 0.2430 (725/2983) 1 Solo_LTR Os_TE_831329 Os_TE_831329 Chr1 27970560 27971517 + COPIA2-LTR_OS 6433 0.2419 (723/2989) 1 Solo_LTR Os_TE_831330 Os_TE_831320 Chr1 27969023 27969024 + INDITTO 263 0.0016 (4/2556) 0 * * Os_TE_831303 Chr1 27959670 27959669 + ORSgTEMT02000059 196 0.0017 (5/2994) 0 * * Os_TE_831301 Chr1 27958272 27958273 - NDNA1TNA_OS 334 0.0023 (7/2996) 0 * * Os_TE_831247 Chr1 27936747 27936748 + RETROSAT2LTRA 3112 0.0023 (7/2994) 0 * Os_TE_831246 Os_TE_831246 Chr1 27936743 27936742 - RETROSAT2LTRA 3112 0.0023 (7/2996) 0 * Os_TE_831247 Os_TE_831244 Chr1 27934547 27934548 + COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_831243 Os_TE_831243 Chr1 27934543 27934542 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_831244 Os_TE_831232 Chr1 27931499 27931500 + NDNA2TNA_OS 346 0.7492 (2223/2967) 0 * Os_TE_831231 Os_TE_831231 Chr1 27931497 27931496 - NDNA2TNA_OS 346 0.7471 (2213/2962) 0 * Os_TE_831232 Os_TE_831230 Chr1 27931492 27931493 + NDNA2TNA_OS 346 0.7475 (2220/2970) 0 * * Os_TE_831227 Chr1 27930081 27930080 + COPI2_LTR 4733 0.0007 (2/2999) 0 * * Os_TE_831225 Chr1 27929268 27929269 + COPIA2-LTR_OS 6433 0.0003 (1/2927) 0 * * Os_TE_831216 Chr1 27924676 27924677 + MDR2 6967 0.7493 (2224/2968) 0 * Os_TE_831215 Os_TE_831215 Chr1 27924668 27924667 - MDR2 6967 0.7524 (2249/2989) 0 * Os_TE_831216 Os_TE_831190 Chr1 27914621 27914622 + SC-8_LTR 4951 0.0017 (5/2976) 0 * Os_TE_831189 Os_TE_831189 Chr1 27914617 27914616 - SC-8_LTR 4951 0.0017 (5/2978) 0 * Os_TE_831190 Os_TE_831165 Chr1 27905682 27899251 + COPIA2-LTR_OS 6433 0.2438 (727/2982) 1 Intact Os_TE_831161 Os_TE_831161 Chr1 27899251 27905682 - COPIA2-LTR_OS 6433 0.2487 (744/2992) 1 Intact Os_TE_831165 Os_TE_831159 Chr1 27898064 27898065 + SC-1_LTR 6888 0.0013 (4/2994) 0 * * Os_TE_831148 Chr1 27891703 27891702 + TRUNCATOR 2918 0.0017 (5/2994) 0 * * Os_TE_831125 Chr1 27881116 27881117 - RETROSAT4_LTR 13504 0.6454 (1882/2916) 0 * * Os_TE_831119 Chr1 27876763 27876762 + ORSgTERT00200526 4029 0.0007 (2/2996) 0 * * Os_TE_831118 Chr1 27875604 27875603 + ORSgTEMT01601591 242 0.5151 (1540/2990) 0 * Os_TE_831117 Os_TE_831117 Chr1 27875598 27875599 + STOWAWAY51_OS 246 0.5136 (1532/2983) 0 * Os_TE_831118 Os_TE_831107 Chr1 27873148 27873149 + RIREX_LTR 8828 0.0012 (3/2570) 0 * * Os_TE_831104 Chr1 27870151 27870152 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_831103 Os_TE_831103 Chr1 27870147 27870146 + COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_831104 Os_TE_831102 Chr1 27869113 27869114 + RIREX_LTR 8828 0.0043 (13/2994) 0 * Os_TE_831101 Os_TE_831101 Chr1 27869109 27869108 - RIREX_LTR 8828 0.0043 (13/2992) 0 * Os_TE_831102 Os_TE_831094 Chr1 27863853 27863852 - RETROSAT4_LTR 13504 0.0003 (1/2970) 0 * * Os_TE_831092 Chr1 27863578 27863579 - TRUNCATOR2_LTR 2904 0.0003 (1/2960) 0 * Os_TE_831091 Os_TE_831091 Chr1 27863574 27863573 + TRUNCATOR2_LTR 2904 0.0003 (1/2972) 0 * Os_TE_831092 Os_TE_831073 Chr1 27848970 27848971 - RIREX_LTR 8828 0.0003 (1/2996) 0 * Os_TE_831072 Os_TE_831072 Chr1 27848966 27848965 + RIREX_LTR 8828 0.0003 (1/2996) 0 * Os_TE_831073 Os_TE_831071 Chr1 27848485 27848486 + RIREX_LTR 8828 0.0003 (1/2975) 0 * Os_TE_831070 Os_TE_831070 Chr1 27848481 27848480 - RIREX_LTR 8828 0.0003 (1/2974) 0 * Os_TE_831071 Os_TE_831063 Chr1 27846404 27846405 + ORSgTETNOOT01834 251 0.0003 (1/2978) 0 * Os_TE_831062 Os_TE_831062 Chr1 27846402 27846401 + ORSgTETNOOT01998 254 0.0003 (1/2971) 0 * Os_TE_831063 Os_TE_831013 Chr1 27829801 27829802 + INDITTO 263 0.0007 (2/2991) 0 * Os_TE_831012 Os_TE_831012 Chr1 27829799 27829798 - INDITTO 263 0.0007 (2/2993) 0 * Os_TE_831013 Os_TE_830966 Chr1 27814896 27814895 - ORSgTEMT02400245 225 0.5192 (1553/2991) 0 * Os_TE_830965 Os_TE_830965 Chr1 27814892 27814893 + ORSgTEMT02400206 225 0.5188 (1547/2982) 0 * Os_TE_830966 Os_TE_830939 Chr1 27800402 27800403 - RIRE3A_LTR 10580 0.0167 (50/2997) 0 * * Os_TE_830914 Chr1 27786015 27786016 + RIREX_LTR 8828 0.0007 (2/2980) 0 * * Os_TE_830907 Chr1 27784411 27784412 + ORSgTETNOOT00908 242 0.7221 (2133/2954) 0 * Os_TE_830906 Os_TE_830906 Chr1 27784405 27784404 + ORSgTETNOOT01219 231 0.7090 (2025/2856) 0 * Os_TE_830907 Os_TE_830899 Chr1 27777075 27777076 - RIREX_LTR 8828 0.0003 (1/2995) 0 * Os_TE_830898 Os_TE_830898 Chr1 27777071 27777070 + RIREX_LTR 8828 0.0003 (1/2994) 0 * Os_TE_830899 Os_TE_830890 Chr1 27775432 27775433 + COPI2_LTR 4733 0.0004 (1/2784) 0 * Os_TE_830889 Os_TE_830889 Chr1 27775428 27775427 - COPI2_LTR 4733 0.0003 (1/2988) 0 * Os_TE_830890 Os_TE_830842 Chr1 27766462 27766082 - AMYLTP 383 0.2843 (845/2972) 1 Intact Os_TE_830838 Os_TE_830838 Chr1 27766082 27766462 + AMYLTP 383 0.2841 (843/2967) 1 Intact Os_TE_830842 Os_TE_830833 Chr1 27763777 27763778 - ORSgTETNOOT02417 265 0.0003 (1/2993) 0 * Os_TE_830832 Os_TE_830832 Chr1 27763775 27763774 - INDITTO 263 0.0003 (1/2994) 0 * Os_TE_830833 Os_TE_830830 Chr1 27763554 27763553 + CASLET 354 0.1328 (397/2989) 0 * * Os_TE_830829 Chr1 27761913 27761912 + STOWAWAY51_OS 246 0.0007 (2/2964) 0 * Os_TE_830828 Os_TE_830828 Chr1 27761907 27761908 - STOWAWAY51_OS 246 0.0007 (2/2967) 0 * Os_TE_830829 Os_TE_830777 Chr1 27732009 27732008 - ORSiTETNOOT00216 3569 0.0010 (3/2986) 0 * * Os_TE_830740 Chr1 27713297 27713298 - RIRE2_LTR 11306 0.0023 (7/2983) 0 * Os_TE_830739 Os_TE_830739 Chr1 27713293 27713292 + RIRE2_LTR 11306 0.0023 (7/2981) 0 * Os_TE_830740 Os_TE_830716 Chr1 27708751 27708752 + COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_830715 Os_TE_830715 Chr1 27708747 27708746 - COPI2_LTR 4733 0.0003 (1/2992) 0 * Os_TE_830716 Os_TE_830712 Chr1 27707910 27707911 + ORSgTETNOOT00032 218 0.0023 (7/2999) 0 * * Os_TE_830709 Chr1 27707597 27707598 + TRUNCATOR2_LTR 2904 0.0017 (5/2971) 0 * Os_TE_830708 Os_TE_830708 Chr1 27707593 27707592 - TRUNCATOR2_LTR 2904 0.0017 (5/2971) 0 * Os_TE_830709 Os_TE_830707 Chr1 27707240 27707241 - COPI2_LTR 4733 0.0003 (1/2999) 0 * Os_TE_830706 Os_TE_830706 Chr1 27707236 27707235 + COPI2_LTR 4733 0.0007 (2/2999) 0 * Os_TE_830707 Os_TE_830678 Chr1 27686756 27686755 - COPIA2-LTR_OS 6433 0.0007 (2/2974) 0 * * Os_TE_830668 Chr1 27681592 27681591 + HELITRON3_OS 12693 0.6563 (1927/2936) 0 * Os_TE_830667 Os_TE_830667 Chr1 27681591 27681592 - HELITRON3_OS 12693 0.6346 (1815/2860) 0 * Os_TE_830668 Os_TE_830661 Chr1 27676371 27676372 - HARB-1_OS 5166 0.0078 (23/2949) 0 * Os_TE_830660 Os_TE_830660 Chr1 27676369 27676368 + HARB-1_OS 5166 0.0078 (23/2962) 0 * Os_TE_830661 Os_TE_830659 Chr1 27676323 27676324 + RIREX_LTR 8828 0.0017 (5/2961) 0 * Os_TE_830658 Os_TE_830658 Chr1 27676319 27676318 - RIREX_LTR 8828 0.0017 (5/2953) 0 * Os_TE_830659 Os_TE_830639 Chr1 27667017 27667016 - STOWAWAY51_OS 246 0.0003 (1/2977) 0 * Os_TE_830638 Os_TE_830638 Chr1 27667011 27667012 + STOWAWAY51_OS 246 0.0003 (1/2979) 0 * Os_TE_830639 Os_TE_830625 Chr1 27654913 27654914 + AMYLTP 383 0.0017 (5/2987) 0 * Os_TE_830624 Os_TE_830624 Chr1 27654905 27654904 - AMYLTP 383 0.0013 (4/2987) 0 * Os_TE_830625 Os_TE_830621 Chr1 27652994 27652993 - COPIA2-LTR_OS 6433 0.0004 (1/2802) 0 * * Os_TE_830618 Chr1 27652136 27652137 + COPI1_LTR 4721 0.0013 (4/2997) 0 * Os_TE_830617 Os_TE_830617 Chr1 27652132 27652131 - SZ-25LTR 330 0.0013 (4/2997) 0 * Os_TE_830618 Os_TE_830598 Chr1 27646563 27646564 - COPIA2-LTR_OS 6433 0.0007 (2/2989) 0 * Os_TE_830597 Os_TE_830597 Chr1 27646559 27646558 + COPIA2-LTR_OS 6433 0.0007 (2/2991) 0 * Os_TE_830598 Os_TE_830594 Chr1 27645718 27645719 + MPING 430 0.0013 (4/2976) 0 * Os_TE_830593 Os_TE_830593 Chr1 27645716 27645715 - MPING 430 0.0013 (4/2977) 0 * Os_TE_830594 Os_TE_830574 Chr1 27639869 27639868 + RETROSAT2LTR 12796 0.6459 (1503/2327) 0 * * Os_TE_830556 Chr1 27636582 27636581 - RETRO2A_LTR 12895 0.0124 (37/2990) 0 * * Os_TE_830530 Chr1 27622419 27622420 - COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_830529 Os_TE_830529 Chr1 27622415 27622414 + COPI2_LTR 4733 0.0003 (1/2997) 0 * Os_TE_830530 Os_TE_830528 Chr1 27622072 27622073 - COPI2_LTR 4733 0.0158 (47/2983) 0 * Os_TE_830527 Os_TE_830527 Chr1 27622068 27622067 + COPI2_LTR 4733 0.0164 (49/2982) 0 * Os_TE_830528 Os_TE_830511 Chr1 27618073 27618072 - OSTE33 1012 0.1584 (471/2974) 0 * * Os_TE_830502 Chr1 27615553 27615552 - STOWAWAY51_OS 246 0.0003 (1/2953) 0 * Os_TE_830501 Os_TE_830501 Chr1 27615547 27615548 + STOWAWAY51_OS 246 0.0003 (1/2951) 0 * Os_TE_830502 Os_TE_830497 Chr1 27615287 27615286 + ORSgTEMT00901138 254 0.0003 (1/2977) 0 * * Os_TE_830494 Chr1 27615205 27615204 - ORSgTEMT00700002 381 0.0027 (8/2946) 0 * Os_TE_830493 Os_TE_830493 Chr1 27615198 27615199 + ORSgTEMT00700017 386 0.0027 (8/2952) 0 * Os_TE_830494 Os_TE_830486 Chr1 27613164 27613165 - HARB-1_OS 5166 0.0010 (3/2964) 0 * Os_TE_830485 Os_TE_830485 Chr1 27613162 27613161 + HARB-1_OS 5166 0.0010 (3/2967) 0 * Os_TE_830486 Os_TE_830467 Chr1 27599659 27599660 + ORSgTEMT00600272 361 0.0023 (7/2980) 0 * * Os_TE_830448 Chr1 27588753 27588752 + ORSgTEMT01601591 242 0.0003 (1/2988) 0 * Os_TE_830447 Os_TE_830447 Chr1 27588747 27588748 + STOWAWAY51_OS 246 0.0003 (1/2989) 0 * Os_TE_830448 Os_TE_830442 Chr1 27586312 27586313 + ORSiTERTOOT00296 5553 0.0070 (21/2996) 0 * * Os_TE_830433 Chr1 27581055 27581056 - NDNA1TNA_OS 334 0.0023 (7/2988) 0 * Os_TE_830432 Os_TE_830432 Chr1 27581054 27581053 + NDNA1TNA_OS 334 0.0023 (7/2986) 0 * Os_TE_830433 Os_TE_830423 Chr1 27580253 27580254 + ORSgTETNOOT00908 242 0.0017 (5/2940) 0 * * Os_TE_830418 Chr1 27579992 27579993 + ORSgTETNOOT00908 242 0.6826 (2041/2990) 0 * * Os_TE_830411 Chr1 27578282 27578283 + ORSiCMCM00100019 2717 0.0007 (2/2990) 0 * Os_TE_830410 Os_TE_830410 Chr1 27578278 27578277 - TRUNCATOR2_LTR 2904 0.0007 (2/2992) 0 * Os_TE_830411 Os_TE_830371 Chr1 27561785 27561786 - ORSgTEMT00501447 126 0.0040 (12/2999) 0 * * Os_TE_830358 Chr1 27558135 27558134 - TREP219 104 0.0038 (11/2930) 0 * * Os_TE_830354 Chr1 27557212 27557211 + ORSgTEMT00300069 394 0.0040 (12/2995) 0 * * Os_TE_830351 Chr1 27555474 27555473 + COPIA2-LTR_OS 6433 0.0040 (12/2980) 0 * * Os_TE_830346 Chr1 27555046 27555045 - ORSgTEMT01601208 238 0.0030 (9/2955) 0 * Os_TE_830345 Os_TE_830345 Chr1 27555044 27555045 - ORSgTEMT01601208 238 0.0014 (4/2957) 0 * Os_TE_830346 Os_TE_830340 Chr1 27554427 27550536 - SZ-35LTR 3853 0.3615 (983/2719) 1 Intact * Os_TE_830333 Chr1 27546214 27546215 - KIDDOB 280 0.0003 (1/2978) 0 * * Os_TE_830318 Chr1 27540529 27539150 + OSTE33 1012 0.3235 (968/2992) 1 Intact Os_TE_830317 Os_TE_830317 Chr1 27539150 27540529 + OSTE33 1012 0.3137 (930/2965) 1 Intact Os_TE_830318 Os_TE_830291 Chr1 27527315 27527316 + SZ-40LTR 2465 0.0013 (4/2992) 0 * Os_TE_830290 Os_TE_830290 Chr1 27527312 27527311 - GYPSY-A_LTR 8951 0.0017 (5/2988) 0 * Os_TE_830291 Os_TE_830277 Chr1 27523196 27523197 - TNR2A 152 0.7719 (2291/2968) 0 * * Os_TE_830268 Chr1 27520952 27520951 + ORSgTEMT01400031 216 0.0043 (13/2994) 0 * Os_TE_830267 Os_TE_830267 Chr1 27520951 27520952 + STOWAWAY9_OS 235 0.0037 (11/2993) 0 * Os_TE_830268 Os_TE_830264 Chr1 27517648 27518871 + ORSgTETN00200005 1121 0.3321 (984/2963) 1 Intact * Os_TE_830259 Chr1 27516012 27516013 - ORSgTEMT00502257 142 0.0020 (6/2994) 0 * Os_TE_830258 Os_TE_830258 Chr1 27516008 27516007 - ORSgTETNOOT00906 136 0.0020 (6/2995) 0 * Os_TE_830259 Os_TE_830244 Chr1 27512522 27512523 + RIREX_LTR 8828 0.0017 (5/2995) 0 * Os_TE_830243 Os_TE_830243 Chr1 27512518 27512517 - RIREX_LTR 8828 0.0017 (5/2992) 0 * Os_TE_830244 Os_TE_830228 Chr1 27509494 27509495 - RIREX_LTR 8828 0.0003 (1/2988) 0 * Os_TE_830227 Os_TE_830227 Chr1 27509490 27509489 + RIREX_LTR 8828 0.0003 (1/2992) 0 * Os_TE_830228 Os_TE_830226 Chr1 27508501 27508278 - ORSiTEMT01000008 242 0.3557 (1054/2963) 1 Intact * Os_TE_830223 Chr1 27508259 27508260 + NDNA1TNA_OS 334 0.0003 (1/2992) 0 * * Os_TE_830220 Chr1 27507696 27508033 + ORSgTEMT00101674 340 0.3582 (1062/2965) 1 Intact * Os_TE_830204 Chr1 27498015 27498016 - COPIA2-LTR_OS 6433 0.0009 (1/1077) 0 * Os_TE_830203 Os_TE_830203 Chr1 27498011 27498010 + COPIA2-LTR_OS 6433 0.0009 (1/1076) 0 * Os_TE_830204 Os_TE_830191 Chr1 27496637 27496638 + MPING 430 0.0027 (3/1111) 0 * Os_TE_830190 Os_TE_830190 Chr1 27496635 27496634 - MPING 430 0.0010 (3/2970) 0 * Os_TE_830191 Os_TE_830160 Chr1 27486886 27486887 + TRUNCATOR2_LTR 2904 0.1148 (342/2979) 0 * Os_TE_830159 Os_TE_830159 Chr1 27486882 27486881 - TRUNCATOR2_LTR 2904 0.1162 (346/2978) 0 * Os_TE_830160 Os_TE_830147 Chr1 27482685 27482686 + TWIF 586 0.0003 (1/2958) 0 * * Os_TE_830144 Chr1 27482378 27482377 + RETRO2_LTR 12874 0.0712 (206/2895) 0 * * Os_TE_830140 Chr1 27481517 27481516 - AMYLTP 383 0.0545 (162/2974) 0 * * Os_TE_830137 Chr1 27481122 27481121 - TRUNCATOR2_LTR 2904 0.0007 (2/2843) 0 * * Os_TE_830111 Chr1 27474146 27474147 - ORSiTERTOOT00367 5639 0.0003 (1/2987) 0 * Os_TE_830110 Os_TE_830110 Chr1 27474142 27474141 + ORSiTERTOOT00367 5639 0.0003 (1/2987) 0 * Os_TE_830111 Os_TE_830097 Chr1 27470279 27470280 - SZ-40LTR 2465 0.5477 (1595/2912) 0 * * Os_TE_830071 Chr1 27463902 27463903 - ORSgTEMT00900737 249 0.0007 (2/2922) 0 * * Os_TE_830068 Chr1 27463795 27436274 + RETRO2_LTR 12874 0.3683 (1077/2924) 1 Intact * Os_TE_830015 Chr1 27420197 27420196 - F524 291 0.0020 (6/2996) 0 * * Os_TE_829977 Chr1 27390437 27390436 - ORSgTEMT00700002 381 0.0003 (1/2963) 0 * * Os_TE_829964 Chr1 27383512 27383513 + AMYLTP 383 0.6048 (1798/2973) 0 * * Os_TE_829946 Chr1 27377746 27377747 - COPIA2-LTR_OS 6433 0.0067 (20/2997) 0 * * Os_TE_829944 Chr1 27377052 27377053 + ORSiTERTOOT00296 5553 0.0050 (15/2997) 0 * Os_TE_829943 Os_TE_829943 Chr1 27377048 27377047 - SC-3_LTR 5748 0.0050 (15/2997) 0 * Os_TE_829944 Os_TE_829902 Chr1 27370835 27370836 + MPING 430 0.0003 (1/2986) 0 * Os_TE_829901 Os_TE_829901 Chr1 27370833 27370832 - MPING 430 0.0003 (1/2975) 0 * Os_TE_829902 Os_TE_829882 Chr1 27368061 27368062 + ORSiTERTOOT00296 5553 0.0003 (1/2996) 0 * Os_TE_829881 Os_TE_829881 Chr1 27368057 27368056 - SC-3_LTR 5748 0.0003 (1/2997) 0 * Os_TE_829882 Os_TE_829874 Chr1 27364192 27364193 + ORSiTERTOOT00296 5553 0.0010 (3/2980) 0 * Os_TE_829873 Os_TE_829873 Chr1 27364188 27364187 - SC-3_LTR 5748 0.0010 (3/2980) 0 * Os_TE_829874 Os_TE_829864 Chr1 27353464 27353463 + TRUNCATOR2_LTR 2904 0.0024 (7/2935) 0 * * Os_TE_829851 Chr1 27343373 27343374 + OSTONOR1_LTR 6440 0.0023 (7/2990) 0 * Os_TE_829850 Os_TE_829850 Chr1 27343369 27343368 - ORSiTERT00100062 5674 0.0023 (7/2981) 0 * Os_TE_829851 Os_TE_829849 Chr1 27342362 27342361 + STOWAWAY51_OS 246 0.1872 (559/2986) 0 * Os_TE_829848 Os_TE_829848 Chr1 27342356 27342357 - STOWAWAY51_OS 246 0.1755 (519/2958) 0 * Os_TE_829849 Os_TE_829846 Chr1 27340145 27340146 + ORSgTETNOOT00221 261 0.0020 (6/2984) 0 * Os_TE_829845 Os_TE_829845 Chr1 27340143 27340142 + INDITTO 263 0.0020 (6/2982) 0 * Os_TE_829846 Os_TE_829833 Chr1 27331016 27331015 + ORSgTETNOOT00908 242 0.0003 (1/2980) 0 * * Os_TE_829829 Chr1 27329868 27329869 + RETRO2A_LTR 12895 0.0029 (7/2415) 0 * * Os_TE_829809 Chr1 27322369 27322370 - COPIA2-LTR_OS 6433 0.0013 (4/2999) 0 * Os_TE_829808 Os_TE_829808 Chr1 27322365 27322364 + COPIA2-LTR_OS 6433 0.0010 (3/2999) 0 * Os_TE_829809 Os_TE_829805 Chr1 27317382 27317381 + OSTE15 1168 0.0023 (7/2997) 0 * * Os_TE_829792 Chr1 27314096 27314097 - GYPSY-A_LTR 8951 0.0003 (1/2987) 0 * Os_TE_829791 Os_TE_829791 Chr1 27314092 27314091 + SZ-40LTR 2465 0.0003 (1/2990) 0 * Os_TE_829792 Os_TE_829748 Chr1 27289727 27289728 - MPING 430 0.0003 (1/2987) 0 * * Os_TE_829731 Chr1 27285498 27285499 - RETRO2_LTR 12874 0.0024 (7/2937) 0 * Os_TE_829730 Os_TE_829730 Chr1 27285494 27285493 + RETRO2A_LTR 12895 0.0024 (7/2959) 0 * Os_TE_829731 Os_TE_829715 Chr1 27283089 27281744 + OSTE33 1012 0.5709 (1140/1997) 1 Intact * Os_TE_829696 Chr1 27274162 27274163 - AMYLTP 383 0.0014 (4/2948) 0 * Os_TE_829695 Os_TE_829695 Chr1 27274154 27274153 + AMYLTP 383 0.0014 (4/2946) 0 * Os_TE_829696 Os_TE_829684 Chr1 27268721 27268722 - ORSgTETNOOT00477 252 0.0003 (1/2980) 0 * * Os_TE_829675 Chr1 27263092 27263093 + ORSiTERTOOT00296 5553 0.0003 (1/2985) 0 * Os_TE_829674 Os_TE_829674 Chr1 27263088 27263087 - SC-3_LTR 5748 0.0003 (1/2985) 0 * Os_TE_829675 Os_TE_829672 Chr1 27261456 27261457 + ORSgTEMT00300069 394 0.0003 (1/2991) 0 * * Os_TE_829655 Chr1 27253955 27253956 + SZ-62LTR 3649 0.0292 (87/2983) 0 * Os_TE_829654 Os_TE_829654 Chr1 27253951 27253950 - SZ-62LTR 3649 0.0315 (94/2988) 0 * Os_TE_829655 Os_TE_829636 Chr1 27250118 27250119 + COPIA2-LTR_OS 6433 0.0003 (1/2971) 0 * Os_TE_829635 Os_TE_829635 Chr1 27250114 27250113 - COPIA2-LTR_OS 6433 0.0003 (1/2968) 0 * Os_TE_829636 Os_TE_829632 Chr1 27248199 27248200 + CASTAWAY-3 314 0.0017 (5/2989) 0 * * Os_TE_829629 Chr1 27246660 27246659 - ORSgTEMT01601432 239 0.0274 (82/2990) 0 * Os_TE_829628 Os_TE_829628 Chr1 27246657 27246658 - ORSgTEMT01601696 238 0.0261 (78/2986) 0 * Os_TE_829629 Os_TE_829606 Chr1 27233611 27233610 + STOWAWAY51_OS 246 0.0003 (1/2916) 0 * Os_TE_829605 Os_TE_829605 Chr1 27233605 27233606 - STOWAWAY51_OS 246 0.0003 (1/2899) 0 * Os_TE_829606 Os_TE_829575 Chr1 27221689 27221690 - WUJI 257 0.6536 (1951/2985) 0 * * Os_TE_829573 Chr1 27220588 27220589 - HARB-1_OS 5166 0.0007 (2/2986) 0 * Os_TE_829572 Os_TE_829572 Chr1 27220586 27220585 + HARB-1_OS 5166 0.0007 (2/2983) 0 * Os_TE_829573 Os_TE_829571 Chr1 27220459 27220460 - ORSiTEMT01300001 950 0.0007 (2/2995) 0 * Os_TE_829570 Os_TE_829570 Chr1 27220454 27220453 + KRISPIE 956 0.0007 (2/2994) 0 * Os_TE_829571 Os_TE_829566 Chr1 27219225 27219226 + MPING 430 0.0003 (1/2998) 0 * Os_TE_829565 Os_TE_829565 Chr1 27219223 27219222 - MPING 430 0.0003 (1/2998) 0 * Os_TE_829566 Os_TE_829550 Chr1 27215394 27215395 - INDITTO 263 0.0003 (1/2991) 0 * Os_TE_829549 Os_TE_829549 Chr1 27215392 27215391 + INDITTO 263 0.0003 (1/2990) 0 * Os_TE_829550 Os_TE_829540 Chr1 27212440 27212441 + OSTE33 1012 0.0371 (111/2995) 0 * Os_TE_829539 Os_TE_829539 Chr1 27212431 27212430 - OSTE33 1012 0.0391 (117/2996) 0 * Os_TE_829540 Os_TE_829530 Chr1 27209975 27209976 - ORSgTEMT02900061 318 0.0017 (5/2983) 0 * * Os_TE_829509 Chr1 27199856 27199857 - INDITTO 263 0.0003 (1/2929) 0 * * Os_TE_829504 Chr1 27192692 27192691 - STOWAWAY51_OS 246 0.0003 (1/2947) 0 * * Os_TE_829502 Chr1 27192656 27192461 - ORSgTETNOOT00467 197 0.4649 (1378/2964) 1 Intact * Os_TE_829486 Chr1 27186808 27186807 + ORSgTETNOOT00459 142 0.0007 (2/2995) 0 * * Os_TE_829485 Chr1 27185455 27185315 + TELIA 141 0.1077 (320/2971) 1 Intact Os_TE_829484 Os_TE_829484 Chr1 27185315 27185455 - TELIA 141 0.1057 (314/2970) 1 Intact Os_TE_829485 Os_TE_829473 Chr1 27184329 27184328 - MDR2 6967 0.0013 (4/2981) 0 * * Os_TE_829463 Chr1 27170360 27170359 - RETRO1_LTR 8314 0.0017 (5/2983) 0 * * Os_TE_829449 Chr1 27167504 27167505 - MPING 430 0.0003 (1/2969) 0 * Os_TE_829448 Os_TE_829448 Chr1 27167502 27167501 + MPING 430 0.0003 (1/2968) 0 * Os_TE_829449 Os_TE_829415 Chr1 27159682 27159681 + ORSgTETNOOT00908 242 0.0020 (6/2976) 0 * * Os_TE_829409 Chr1 27158672 27158673 + Hopscotch_LTR 4876 0.0017 (5/2995) 0 * Os_TE_829408 Os_TE_829408 Chr1 27158668 27158667 - Hopscotch_LTR 4876 0.0017 (5/2995) 0 * Os_TE_829409 Os_TE_829404 Chr1 27154721 27154720 + STOWAWAY51_OS 246 0.0003 (1/2995) 0 * Os_TE_829403 Os_TE_829403 Chr1 27154715 27154716 + ORSgTEMT01601591 242 0.0003 (1/2988) 0 * Os_TE_829404 Os_TE_829374 Chr1 27140271 27140272 + SZ-38 8643 0.0005 (1/1967) 0 * * Os_TE_829370 Chr1 27136478 27136479 - RIREX_LTR 8828 0.0003 (1/2992) 0 * * Os_TE_829367 Chr1 27135554 27135555 + AMYLTP 383 0.0003 (1/2981) 0 * Os_TE_829366 Os_TE_829366 Chr1 27135546 27135545 - AMYLTP 383 0.0003 (1/2988) 0 * Os_TE_829367 Os_TE_829362 Chr1 27131450 27131451 - SC-3_LTR 5748 0.0003 (1/2987) 0 * Os_TE_829361 Os_TE_829361 Chr1 27131446 27131445 + ORSiTERTOOT00296 5553 0.0003 (1/2982) 0 * Os_TE_829362 Os_TE_829332 Chr1 27120993 27120994 + RIRE3_LTR 12054 0.0007 (2/2988) 0 * Os_TE_829331 Os_TE_829331 Chr1 27120989 27120988 - RIRE3_LTR 12054 0.0010 (3/2987) 0 * Os_TE_829332 Os_TE_829318 Chr1 27111904 27111903 + ORSgTEMT01601591 242 0.0003 (1/2978) 0 * * Os_TE_829304 Chr1 27099907 27099908 + OSTE33 1012 0.5792 (1714/2959) 0 * Os_TE_829303 Os_TE_829303 Chr1 27099898 27099897 + OSTE33 1012 0.5735 (1686/2940) 0 * Os_TE_829304 Os_TE_829254 Chr1 27083255 27083256 - MPING 430 0.0003 (1/2932) 0 * Os_TE_829253 Os_TE_829253 Chr1 27083253 27083252 + MPING 430 0.0003 (1/2946) 0 * Os_TE_829254 Os_TE_829247 Chr1 27079194 27079195 - STOWAWAY51_OS 246 0.0003 (1/2978) 0 * * Os_TE_829223 Chr1 27059849 27059850 + INDITTO 263 0.0377 (113/2994) 0 * Os_TE_829222 Os_TE_829222 Chr1 27059847 27059846 - INDITTO 263 0.0388 (115/2964) 0 * Os_TE_829223 Os_TE_829221 Chr1 27059836 27059837 + MPING 430 0.0003 (1/2986) 0 * Os_TE_829220 Os_TE_829220 Chr1 27059834 27059833 - MPING 430 0.0003 (1/2889) 0 * Os_TE_829221 Os_TE_829198 Chr1 27050570 27050571 - SZ-7A_LTR 11400 0.6893 (2028/2942) 0 * * Os_TE_829144 Chr1 27028059 27028058 - CACTA-M 1129 0.6182 (1844/2983) 0 * Os_TE_829143 Os_TE_829143 Chr1 27028058 27028059 + CACTA-D 1038 0.6064 (1769/2917) 0 * Os_TE_829144 Os_TE_829112 Chr1 27021918 27021919 + RIREX_LTR 8828 0.6235 (1850/2967) 0 * Os_TE_829111 Os_TE_829111 Chr1 27021914 27021913 - RIREX_LTR 8828 0.6134 (1791/2920) 0 * Os_TE_829112 Os_TE_829109 Chr1 27019602 27019603 - COPI2_LTR 4733 0.0010 (3/2990) 0 * Os_TE_829108 Os_TE_829108 Chr1 27019598 27019597 + COPI2_LTR 4733 0.0007 (2/2990) 0 * Os_TE_829109 Os_TE_829088 Chr1 27012957 27012956 + MDR2 6967 0.0024 (7/2926) 0 * * Os_TE_829086 Chr1 27011250 27011249 + ORSgTETNOOT00908 242 0.0003 (1/2989) 0 * * Os_TE_829085 Chr1 27008713 27008714 - TRUNCATOR2_LTR 2904 0.0034 (10/2983) 0 * * Os_TE_829084 Chr1 27008615 27008616 - ORSiTERTOOT00396 5939 0.0323 (94/2908) 0 * Os_TE_829083 Os_TE_829083 Chr1 27008611 27008610 + ORSiTERTOOT00396 5939 0.0352 (103/2930) 0 * Os_TE_829084 Os_TE_829063 Chr1 26975624 26975625 - KIDDOD 279 0.0015 (3/1958) 0 * * Os_TE_829061 Chr1 26975577 26975214 - ORSgTEMT00600523 366 0.0978 (275/2811) 1 Intact Os_TE_829060 Os_TE_829060 Chr1 26975214 26975577 + ORSgTEMT00600287 363 0.2440 (294/1205) 1 Intact Os_TE_829061 Os_TE_829014 Chr1 26942326 26967253 - RETRO2_LTR 12874 0.0973 (290/2980) 1 Intact * Os_TE_829013 Chr1 26942234 26942235 - ORSgTEMT02000041 194 0.6506 (1942/2985) 0 * * Os_TE_828997 Chr1 26923111 26922868 - TESS 244 0.0946 (283/2991) 1 Intact * Os_TE_828995 Chr1 26922495 26922496 - MuDR3_OS 8604 0.0007 (2/2990) 0 * Os_TE_828994 Os_TE_828994 Chr1 26922486 26922485 - MuDR3_OS 8604 0.0007 (2/2987) 0 * Os_TE_828995 Os_TE_828983 Chr1 26914997 26914996 - SC-8_LTR 4951 0.0003 (1/2985) 0 * * Os_TE_828961 Chr1 26899335 26899336 - RETROSAT2LTR 12796 0.6612 (1971/2981) 0 * Os_TE_828960 Os_TE_828960 Chr1 26899333 26899332 + RETROSAT2LTR 12796 0.6197 (1693/2732) 0 * Os_TE_828961 Os_TE_828911 Chr1 26887094 26887093 - INDITTO 263 0.0003 (1/2990) 0 * * Os_TE_828875 Chr1 26872154 26872155 - NDNA2TNA_OS 346 0.6574 (1942/2954) 0 * * Os_TE_828868 Chr1 26869425 26869424 + STOWAWAY51_OS 246 0.0010 (3/2989) 0 * Os_TE_828867 Os_TE_828867 Chr1 26869419 26869420 - STOWAWAY51_OS 246 0.0010 (3/2988) 0 * Os_TE_828868 Os_TE_828849 Chr1 26864371 26864372 - SC-8_LTR 4951 0.0003 (1/2983) 0 * Os_TE_828848 Os_TE_828848 Chr1 26864367 26864366 + SC-8_LTR 4951 0.0003 (1/2987) 0 * Os_TE_828849 Os_TE_828822 Chr1 26843490 26843491 + ORSgTEMT00600272 361 0.0007 (2/2964) 0 * * Os_TE_828812 Chr1 26833989 26833990 - RETRO1_LTR 8314 0.0003 (1/2990) 0 * Os_TE_828811 Os_TE_828811 Chr1 26833985 26833984 + RETRO2A_LTR 12895 0.0003 (1/2991) 0 * Os_TE_828812 Os_TE_828808 Chr1 26832905 26832904 - COPI2_LTR 4733 0.0007 (2/2909) 0 * * Os_TE_828807 Chr1 26832267 26832268 - MDR2 6967 0.0137 (41/2984) 0 * Os_TE_828806 Os_TE_828806 Chr1 26832259 26832258 - MDR2 6967 0.0141 (42/2987) 0 * Os_TE_828807 Os_TE_828801 Chr1 26830110 26830109 - STOWAWAY51_OS 246 0.0003 (1/2977) 0 * Os_TE_828800 Os_TE_828800 Chr1 26830107 26830108 - STOWAWAY51_OS 246 0.0003 (1/2986) 0 * Os_TE_828801 Os_TE_828798 Chr1 26829527 26829526 + MPING 430 0.0003 (1/2993) 0 * * Os_TE_828776 Chr1 26827703 26827702 - STOWAWAY15_OS 145 0.0017 (5/2977) 0 * Os_TE_828775 Os_TE_828775 Chr1 26827702 26827703 + TREP220 109 0.0017 (5/2974) 0 * Os_TE_828776 Os_TE_828774 Chr1 26827628 26827629 + ORSgTEMT00901202 248 0.0003 (1/2899) 0 * * Os_TE_828740 Chr1 26822286 26822287 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_828739 Os_TE_828739 Chr1 26822282 26822281 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_828740 Os_TE_828729 Chr1 26820825 26820826 + ORSgTEMT00501279 126 0.0003 (1/2913) 0 * * Os_TE_828716 Chr1 26815518 26815519 - SC-3_LTR 5748 0.0003 (1/2994) 0 * Os_TE_828715 Os_TE_828715 Chr1 26815514 26815513 + ORSiTERTOOT00296 5553 0.0003 (1/2996) 0 * Os_TE_828716 Os_TE_828712 Chr1 26811680 26811679 - ORSgTEMT02400246 177 0.0003 (1/2982) 0 * Os_TE_828711 Os_TE_828711 Chr1 26811679 26811680 - TYPEM 227 0.0003 (1/2982) 0 * Os_TE_828712 Os_TE_828704 Chr1 26809762 26809763 - TRUNCATOR2_LTR 2904 0.0010 (3/2989) 0 * * Os_TE_828695 Chr1 26804213 26804212 - ORSiTERTOOT00301 9654 0.0004 (1/2490) 0 * * Os_TE_828680 Chr1 26789615 26789616 + DS-RICE4N 715 0.0008 (1/1184) 0 * * Os_TE_828633 Chr1 26770070 26770071 + COPI2_LTR 4733 0.0003 (1/2988) 0 * Os_TE_828632 Os_TE_828632 Chr1 26770066 26770065 - COPI2_LTR 4733 0.0003 (1/2990) 0 * Os_TE_828633 Os_TE_828621 Chr1 26764131 26762623 + MERMITE18B 1306 0.5474 (750/1370) 1 Intact * Os_TE_828614 Chr1 26762202 26762203 - RIRE3A_LTR 10580 0.0010 (3/2903) 0 * Os_TE_828613 Os_TE_828613 Chr1 26762198 26762197 + RIRE3A_LTR 10580 0.0010 (3/2902) 0 * Os_TE_828614 Os_TE_828611 Chr1 26760885 26760884 + ORSgTEMT01601591 242 0.0003 (1/2989) 0 * * Os_TE_828587 Chr1 26757467 26757466 + RIREX_LTR 8828 0.0003 (1/2949) 0 * * Os_TE_828552 Chr1 26743346 26743078 + ORSgTEMT06100010 269 0.2493 (744/2984) 1 Intact Os_TE_828550 Os_TE_828550 Chr1 26743078 26743346 - ORSgTEMT06100010 269 0.2732 (748/2738) 1 Intact Os_TE_828552 Os_TE_828543 Chr1 26740614 26740615 - MuDR2_OS 6770 0.0003 (1/2993) 0 * * Os_TE_828533 Chr1 26735914 26735915 - MPING 430 0.0003 (1/2965) 0 * Os_TE_828532 Os_TE_828532 Chr1 26735912 26735911 + MPING 430 0.0003 (1/2970) 0 * Os_TE_828533 Os_TE_828530 Chr1 26732626 26732627 + HARB-1_OS 5166 0.0003 (1/2995) 0 * Os_TE_828529 Os_TE_828529 Chr1 26732624 26732623 - HARB-1_OS 5166 0.0003 (1/2993) 0 * Os_TE_828530 Os_TE_828522 Chr1 26731050 26730130 - ORSiTETNOOT00107 906 0.2327 (697/2995) 1 Intact Os_TE_828521 Os_TE_828521 Chr1 26730127 26731047 + ORSiTETNOOT00107 906 0.2330 (698/2996) 1 Intact Os_TE_828522 Os_TE_828507 Chr1 26717801 26717802 - INDITTO 263 0.0549 (155/2825) 0 * Os_TE_828506 Os_TE_828506 Chr1 26717799 26717798 + INDITTO 263 0.0554 (158/2854) 0 * Os_TE_828507 Os_TE_828505 Chr1 26717792 26717793 + ORSgTETNOOT00221 261 0.0557 (157/2817) 0 * * Os_TE_828491 Chr1 26715167 26715166 + STOWAWAY11_OS 292 0.0003 (1/2900) 0 * * Os_TE_828442 Chr1 26695468 26695469 - RIRE2_LTR 11306 0.0516 (154/2982) 0 * Os_TE_828441 Os_TE_828441 Chr1 26695464 26695463 - ORSgTERT00201216 11284 0.0509 (152/2985) 0 * Os_TE_828442 Os_TE_828418 Chr1 26690123 26690124 + RIREX_LTR 8828 0.0003 (1/2996) 0 * Os_TE_828417 Os_TE_828417 Chr1 26690119 26690118 - RIREX_LTR 8828 0.0003 (1/2997) 0 * Os_TE_828418 Os_TE_828415 Chr1 26686620 26686619 - STOWAWAY51_OS 246 0.0003 (1/2965) 0 * Os_TE_828414 Os_TE_828414 Chr1 26686614 26686615 + STOWAWAY51_OS 246 0.0003 (1/2962) 0 * Os_TE_828415 Os_TE_828407 Chr1 26685703 26685704 + RIREX_LTR 8828 0.0003 (1/2982) 0 * Os_TE_828406 Os_TE_828406 Chr1 26685699 26685698 - RIREX_LTR 8828 0.0003 (1/2981) 0 * Os_TE_828407 Os_TE_828391 Chr1 26682051 26682052 + SPMLIKE 10989 0.0014 (4/2933) 0 * * Os_TE_828374 Chr1 26679780 26679781 + STOWAWAY49_OS 241 0.7677 (2271/2958) 0 * * Os_TE_828360 Chr1 26658381 26658382 + OSTONOR1_LTR 6440 0.0003 (1/2999) 0 * Os_TE_828359 Os_TE_828359 Chr1 26658377 26658376 - OSTONOR1_LTR 6440 0.0003 (1/2999) 0 * Os_TE_828360 Os_TE_828332 Chr1 26647560 26647559 + ORSgTEMT00700017 386 0.0003 (1/2996) 0 * Os_TE_828331 Os_TE_828331 Chr1 26647550 26647551 + ORSgTEMT00700017 386 0.0003 (1/2997) 0 * Os_TE_828332 Os_TE_828306 Chr1 26639811 26639812 - ORSgTETNOOT02575 245 0.0003 (1/2996) 0 * * Os_TE_828282 Chr1 26627059 26627058 + ORSiTERTOOT00074 4935 0.0020 (6/2964) 0 * * Os_TE_828273 Chr1 26626272 26625190 + RETRO2A_LTR 12895 0.8706 (2591/2976) 1 Solo_LTR * Os_TE_828252 Chr1 26614827 26614828 + SC-8_LTR 4951 0.0013 (4/2980) 0 * Os_TE_828251 Os_TE_828251 Chr1 26614823 26614822 - SC-8_LTR 4951 0.0013 (4/2982) 0 * Os_TE_828252 Os_TE_828245 Chr1 26610082 26610081 + ORSgTEMT02400206 225 0.0030 (9/2991) 0 * Os_TE_828244 Os_TE_828244 Chr1 26610081 26610082 - TYPEM 227 0.0030 (9/2990) 0 * Os_TE_828245 Os_TE_828243 Chr1 26609721 26609722 - RETROSAT4_LTR 13504 0.1120 (331/2956) 0 * Os_TE_828242 Os_TE_828242 Chr1 26609717 26609716 + RETROSAT4_LTR 13504 0.1058 (310/2930) 0 * Os_TE_828243 Os_TE_828223 Chr1 26585318 26585319 - RETRO1_LTR 8314 0.0003 (1/2993) 0 * Os_TE_828222 Os_TE_828222 Chr1 26585314 26585313 + RETRO1_LTR 8314 0.0003 (1/2996) 0 * Os_TE_828223 Os_TE_828153 Chr1 26559179 26559180 + RETRO2_LTR 12874 0.0013 (4/2997) 0 * Os_TE_828152 Os_TE_828152 Chr1 26559175 26559174 - RETRO1_LTR 8314 0.0013 (4/2996) 0 * Os_TE_828153 Os_TE_828109 Chr1 26513926 26513927 + DS-RICE3N 525 0.0048 (9/1861) -1 * * Os_TE_828022 Chr1 26478743 26478744 + ORSiTERTOOT00367 5639 0.0003 (1/2994) 0 * Os_TE_828021 Os_TE_828021 Chr1 26478739 26478738 - ORSiTERTOOT00367 5639 0.0003 (1/2994) 0 * Os_TE_828022 Os_TE_828020 Chr1 26478110 26478111 - ORSiTERTOOT00332 5395 0.0003 (1/2981) 0 * Os_TE_828019 Os_TE_828019 Chr1 26478106 26478105 + ORSiTERTOOT00332 5395 0.0003 (1/2989) 0 * Os_TE_828020 Os_TE_827968 Chr1 26466888 26466889 - STOWAWAY51_OS 246 0.0003 (1/2992) 0 * * Os_TE_827963 Chr1 26463230 26463229 - SC-8_LTR 4951 0.0003 (1/2993) 0 * * Os_TE_827942 Chr1 26452592 26452591 + ORSgTEMT01601122 212 0.0013 (4/2994) 0 * * Os_TE_827939 Chr1 26450416 26450415 - COPI2_LTR 4733 0.0010 (3/2959) 0 * * Os_TE_827933 Chr1 26447243 26447244 + RETROSAT2LTR 12796 0.0578 (173/2993) 0 * Os_TE_827932 Os_TE_827932 Chr1 26447241 26447240 - RETROSAT2LTR 12796 0.0578 (173/2995) 0 * Os_TE_827933 Os_TE_827929 Chr1 26446047 26446048 + SZ-9LTR 965 0.0003 (1/2960) 0 * * Os_TE_827925 Chr1 26445260 26445259 + ENSPM4_OS 11610 0.0013 (4/2982) 0 * * Os_TE_827897 Chr1 26439398 26439397 - ORSgTEMT01400009 212 0.0011 (3/2789) 0 * * Os_TE_827884 Chr1 26437674 26437673 - NDNA2TNA_OS 346 0.0004 (1/2783) 0 * * Os_TE_827873 Chr1 26431455 26431456 - ORSgTEMT00600484 344 0.0013 (4/2999) 0 * * Os_TE_827870 Chr1 26429383 26429384 + ORSiTERTOOT00296 5553 0.0003 (1/2989) 0 * * Os_TE_827847 Chr1 26423053 26423052 + ORSgTEMT01601591 242 0.0004 (1/2815) 0 * * Os_TE_827844 Chr1 26422291 26422290 - CACTA-I 1124 0.0917 (270/2945) 0 * Os_TE_827843 Os_TE_827843 Chr1 26422290 26422291 + CACTA-B 1103 0.0974 (287/2948) 0 * Os_TE_827844 Os_TE_827809 Chr1 26406551 26406550 + OSTONOR1_LTR 6440 0.0003 (1/2997) 0 * * Os_TE_827805 Chr1 26404811 26404812 + ORSgTEMT01600726 235 0.0003 (1/2989) 0 * Os_TE_827804 Os_TE_827804 Chr1 26404806 26404805 - STOWAWAY51_OS 246 0.0003 (1/2990) 0 * Os_TE_827805 Os_TE_827768 Chr1 26387982 26387983 + HELITRON8_OS 8831 0.0003 (1/2912) 0 * * Os_TE_827767 Chr1 26387692 26387693 + COPI2_LTR 4733 0.0007 (2/2956) 0 * * Os_TE_827763 Chr1 26386029 26386030 - ORSgTETNOOT02417 265 0.0013 (4/2995) 0 * Os_TE_827762 Os_TE_827762 Chr1 26386027 26386026 + ORSgTETNOOT00221 261 0.0013 (4/2994) 0 * Os_TE_827763 Os_TE_827729 Chr1 26371696 26371695 + NONAME 312 0.0003 (1/2962) 0 * * Os_TE_827717 Chr1 26369487 26369488 + COPI2_LTR 4733 0.0010 (3/2993) 0 * Os_TE_827716 Os_TE_827716 Chr1 26369483 26369482 - COPI2_LTR 4733 0.0010 (3/2992) 0 * Os_TE_827717 Os_TE_827715 Chr1 26368323 26368324 - ORSiTERTOOT00074 4935 0.0010 (3/2998) 0 * Os_TE_827714 Os_TE_827714 Chr1 26368319 26368318 + ORSiTERTOOT00074 4935 0.0010 (3/2997) 0 * Os_TE_827715 Os_TE_827713 Chr1 26366623 26366624 - SZ-55_LTR 10318 0.0003 (1/2998) 0 * * Os_TE_827699 Chr1 26358835 26347556 - ORSgTETN00200001 10994 0.1111 (331/2979) 1 Intact Os_TE_827696 Os_TE_827696 Chr1 26347556 26358835 + SPMLIKE 10989 0.1076 (319/2964) 1 Intact Os_TE_827699 Os_TE_827654 Chr1 26327743 26327744 - RETROSAT4_LTR 13504 0.0013 (4/2986) 0 * Os_TE_827653 Os_TE_827653 Chr1 26327739 26327738 + RETROSAT4_LTR 13504 0.0013 (4/2984) 0 * Os_TE_827654 Os_TE_827610 Chr1 26313155 26313156 + OSCOPIA2_LTR 5476 0.0013 (4/2987) 0 * Os_TE_827609 Os_TE_827609 Chr1 26313151 26313150 - OSCOPIA2_LTR 5476 0.0013 (4/2981) 0 * Os_TE_827610 Os_TE_827581 Chr1 26306124 26306125 + COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_827580 Os_TE_827580 Chr1 26306119 26306118 - COPI2_LTR 4733 0.0003 (1/2997) 0 * Os_TE_827581 Os_TE_827570 Chr1 26303725 26303726 - SZ-48LTR 3632 0.0172 (51/2963) 0 * * Os_TE_827556 Chr1 26301009 26301008 + OSTE18 129 0.0013 (4/2986) 0 * * Os_TE_827546 Chr1 26289407 26289044 - CASTAWAY 364 0.1164 (343/2947) 1 Intact * Os_TE_827527 Chr1 26274869 26274870 + RETROSAT4_LTR 13504 0.0013 (4/2972) 0 * * Os_TE_827521 Chr1 26271659 26271660 + RETROSAT4_LTR 13504 0.0008 (2/2545) 0 * * Os_TE_827489 Chr1 26261407 26261406 + Cassandra_OS-LTR 764 0.0053 (4/761) 0 * * Os_TE_827477 Chr1 26252878 26252879 + HARB-1_OS 5166 0.0003 (1/2992) 0 * * Os_TE_827466 Chr1 26250073 26250072 - INDITTO 263 0.0165 (49/2974) 0 * * Os_TE_827435 Chr1 26238918 26238919 + COPI2_LTR 4733 0.0037 (11/2982) 0 * * Os_TE_827423 Chr1 26233675 26233674 - BAJIELTR 4500 0.0279 (83/2980) 0 * * Os_TE_827378 Chr1 26218120 26218119 + RETROSAT4_LTR 13504 0.0009 (1/1149) 0 * * Os_TE_827368 Chr1 26207436 26217299 - ENSPM5_OS 9581 0.1101 (327/2970) 1 Intact * Os_TE_827287 Chr1 26171571 26171572 - ORSgTEMT03000007 372 0.0030 (9/2987) 0 * Os_TE_827286 Os_TE_827286 Chr1 26171563 26171562 + ORSgTEMT03000039 377 0.0027 (8/2988) 0 * Os_TE_827287 Os_TE_827279 Chr1 26168210 26168211 + INDITTO 263 0.0020 (6/2994) 0 * Os_TE_827278 Os_TE_827278 Chr1 26168208 26168207 - INDITTO 263 0.0017 (5/2993) 0 * Os_TE_827279 Os_TE_827277 Chr1 26168055 26168054 + ORSgTEMT01602181 239 0.0013 (4/2994) 0 * Os_TE_827276 Os_TE_827276 Chr1 26168052 26168053 - ORSgTEMT01601432 239 0.0013 (4/2994) 0 * Os_TE_827277 Os_TE_827261 Chr1 26160280 26160281 + TRUNCATOR 2918 0.0217 (65/2994) 0 * Os_TE_827260 Os_TE_827260 Chr1 26160274 26160273 - ORSiTERT00200154 9386 0.0214 (64/2994) 0 * Os_TE_827261 Os_TE_827241 Chr1 26153356 26153357 - INDITTO 263 0.0013 (4/2988) 0 * Os_TE_827240 Os_TE_827240 Chr1 26153354 26153353 + INDITTO 263 0.0013 (4/2989) 0 * Os_TE_827241 Os_TE_827211 Chr1 26140938 26141697 - MUDRN3_OS 903 0.7313 (2134/2918) 1 Intact * Os_TE_827198 Chr1 26134095 26134096 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_827197 Os_TE_827197 Chr1 26134091 26134090 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_827198 Os_TE_827149 Chr1 26100073 26100072 + INDITTO 263 0.0020 (6/2993) 0 * * Os_TE_827146 Chr1 26099385 26099384 - ORSiTETNOOT00107 906 0.0294 (86/2925) 0 * Os_TE_827145 Os_TE_827145 Chr1 26099381 26099382 + ORSiTETNOOT00107 906 0.0311 (88/2834) 0 * Os_TE_827146 Os_TE_827143 Chr1 26099348 26099347 - STOWAWAY2_OS 250 0.2294 (673/2934) 0 * * Os_TE_827121 Chr1 26087121 26087122 + RIREX_LTR 8828 0.0003 (1/2955) 0 * Os_TE_827120 Os_TE_827120 Chr1 26087117 26087116 - RIREX_LTR 8828 0.0003 (1/2936) 0 * Os_TE_827121 Os_TE_827118 Chr1 26085942 26085943 + RIRE3_LTR 12054 0.8324 (2448/2941) 0 * Os_TE_827117 Os_TE_827117 Chr1 26085939 26085938 - RIRE3_LTR 12054 0.8358 (2494/2984) 0 * Os_TE_827118 Os_TE_827106 Chr1 26080125 26080126 - ORSgTERT00100663 207 0.0003 (1/2987) 0 * * Os_TE_827102 Chr1 26074068 26074069 - ORSiTERT00100062 5674 0.0013 (4/2994) 0 * Os_TE_827101 Os_TE_827101 Chr1 26074064 26074063 + OSTONOR1_LTR 6440 0.0013 (4/2995) 0 * Os_TE_827102 Os_TE_827090 Chr1 26060138 26060139 + NDNA1TNA_OS 334 0.0010 (3/2993) 0 * Os_TE_827089 Os_TE_827089 Chr1 26060136 26060135 - NDNA1TNA_OS 334 0.0010 (3/2991) 0 * Os_TE_827090 Os_TE_827039 Chr1 26041836 26041837 - RIREX_LTR 8828 0.0080 (24/2985) 0 * Os_TE_827038 Os_TE_827038 Chr1 26041832 26041831 + RIREX_LTR 8828 0.0080 (24/2987) 0 * Os_TE_827039 Os_TE_827037 Chr1 26041527 26041526 - SZ-5LTR 1223 0.0021 (6/2899) 0 * * Os_TE_827032 Chr1 26035855 26035856 - STOWAWAY1_OS 149 0.0003 (1/2948) 0 * * Os_TE_826938 Chr1 25998097 25998098 + NDNA1TNA_OS 334 0.0492 (142/2889) 0 * Os_TE_826937 Os_TE_826937 Chr1 25998095 25998094 - NDNA1TNA_OS 334 0.0454 (134/2951) 0 * Os_TE_826938 Os_TE_826924 Chr1 25992267 25992268 - COPIA2-LTR_OS 6433 0.0007 (2/2996) 0 * Os_TE_826923 Os_TE_826923 Chr1 25992263 25992262 + COPIA2-LTR_OS 6433 0.0007 (2/2998) 0 * Os_TE_826924 Os_TE_826907 Chr1 25988262 25988261 - GYPSY-A_LTR 8951 0.0017 (5/2985) 0 * * Os_TE_826894 Chr1 25983200 25983199 + ORSgTEMT01601591 242 0.0007 (2/2992) 0 * * Os_TE_826883 Chr1 25979446 25979447 - SC-3_LTR 5748 0.0007 (2/2980) 0 * Os_TE_826882 Os_TE_826882 Chr1 25979442 25979441 + ORSiTERTOOT00296 5553 0.0007 (2/2984) 0 * Os_TE_826883 Os_TE_826873 Chr1 25973410 25973411 + MuDR3_OS 8604 0.0537 (160/2982) 0 * Os_TE_826872 Os_TE_826872 Chr1 25973402 25973401 - MuDR3_OS 8604 0.0489 (143/2923) 0 * Os_TE_826873 Os_TE_826822 Chr1 25956378 25956379 + ORSiTERTOOT00074 4935 0.0003 (1/2949) 0 * Os_TE_826821 Os_TE_826821 Chr1 25956374 25956373 - ORSiTERTOOT00074 4935 0.0003 (1/2940) 0 * Os_TE_826822 Os_TE_826815 Chr1 25953138 25953139 + ORSgTERTOOT00009 12852 0.8200 (2300/2805) 0 * * Os_TE_826804 Chr1 25947352 25937891 + RETRO2A_LTR 12895 0.1266 (365/2882) 1 Intact Os_TE_826798 Os_TE_826798 Chr1 25937891 25947352 - RETRO1_LTR 8314 0.1254 (360/2871) 1 Intact Os_TE_826804 Os_TE_826663 Chr1 25872867 25872866 + RIREX_LTR 8828 0.0003 (1/2974) 0 * * Os_TE_826662 Chr1 25872657 25872658 + NDNA2TNA_OS 346 0.0426 (127/2978) 0 * Os_TE_826661 Os_TE_826661 Chr1 25872655 25872654 - NDNA2TNA_OS 346 0.0420 (125/2979) 0 * Os_TE_826662 Os_TE_826650 Chr1 25866969 25866970 + ORSgTETNOOT01998 254 0.0007 (2/2989) 0 * * Os_TE_826634 Chr1 25860272 25856890 + GYPSY-A_LTR 8951 0.1204 (358/2974) 1 Solo_LTR * Os_TE_826625 Chr1 25852131 25852132 - COPI2_LTR 4733 0.0013 (4/2990) 0 * Os_TE_826624 Os_TE_826624 Chr1 25852127 25852126 + COPI2_LTR 4733 0.0017 (5/2989) 0 * Os_TE_826625 Os_TE_826519 Chr1 25822714 25822713 - Cassandra_OS-LTR 764 0.0007 (2/2968) 0 * * Os_TE_826461 Chr1 25791799 25791800 - COPI2_LTR 4733 0.0003 (1/2949) 0 * Os_TE_826460 Os_TE_826460 Chr1 25791795 25791794 + COPI2_LTR 4733 0.0003 (1/2947) 0 * Os_TE_826461 Os_TE_826457 Chr1 25789686 25789687 + MPING 430 0.0003 (1/2992) 0 * Os_TE_826456 Os_TE_826456 Chr1 25789684 25789683 - MPING 430 0.0003 (1/2988) 0 * Os_TE_826457 Os_TE_826425 Chr1 25783792 25783793 + RETRO2A_LTR 12895 0.0355 (106/2984) 0 * * Os_TE_826411 Chr1 25782385 25782386 + TELIA 141 0.0003 (1/2975) 0 * Os_TE_826410 Os_TE_826410 Chr1 25782377 25782376 - TELIA 141 0.0003 (1/2974) 0 * Os_TE_826411 Os_TE_826404 Chr1 25776090 25776091 - COPIA2-LTR_OS 6433 0.0040 (12/2995) 0 * Os_TE_826403 Os_TE_826403 Chr1 25776086 25776085 + COPIA2-LTR_OS 6433 0.0040 (12/2994) 0 * Os_TE_826404 Os_TE_826395 Chr1 25770872 25770873 - RETROFIT_LTR 4866 0.0003 (1/2970) 0 * * Os_TE_826378 Chr1 25765325 25765324 + STOWAWAY51_OS 246 0.0158 (47/2984) 0 * Os_TE_826377 Os_TE_826377 Chr1 25765319 25765320 - STOWAWAY51_OS 246 0.0157 (47/2985) 0 * Os_TE_826378 Os_TE_826359 Chr1 25751281 25751282 - NDNA1TNA_OS 334 0.0003 (1/2994) 0 * Os_TE_826358 Os_TE_826358 Chr1 25751279 25751278 + NDNA1TNA_OS 334 0.0003 (1/2995) 0 * Os_TE_826359 Os_TE_826338 Chr1 25743074 25743075 - RETRO1_LTR 8314 0.0003 (1/2982) 0 * Os_TE_826337 Os_TE_826337 Chr1 25743070 25743069 + RETRO2A_LTR 12895 0.0003 (1/2984) 0 * Os_TE_826338 Os_TE_826334 Chr1 25741793 25741794 - RETRO2A_LTR 12895 0.0384 (115/2997) 0 * * Os_TE_826302 Chr1 25720393 25720394 + RIREX_LTR 8828 0.0003 (1/2993) 0 * Os_TE_826301 Os_TE_826301 Chr1 25720389 25720388 - RIREX_LTR 8828 0.0003 (1/2992) 0 * Os_TE_826302 Os_TE_826267 Chr1 25702434 25702435 - AMYLTP 383 0.0010 (3/2994) 0 * Os_TE_826266 Os_TE_826266 Chr1 25702426 25702425 + AMYLTP 383 0.0010 (3/2991) 0 * Os_TE_826267 Os_TE_826256 Chr1 25701114 25701113 + RETROSAT4_LTR 13504 0.0007 (2/2992) 0 * * Os_TE_826252 Chr1 25698243 25698244 - COPI2_LTR 4733 0.0044 (13/2945) 0 * Os_TE_826251 Os_TE_826251 Chr1 25698239 25698238 + COPI2_LTR 4733 0.0044 (13/2950) 0 * Os_TE_826252 Os_TE_826198 Chr1 25679451 25679450 - ENSPM4_OS 11610 0.4840 (1440/2975) 0 * * Os_TE_826187 Chr1 25677376 25677377 - ORSgTEMT00600085 364 0.0020 (6/2942) 0 * Os_TE_826186 Os_TE_826186 Chr1 25677374 25677373 + CASTAWAY 364 0.0020 (6/2934) 0 * Os_TE_826187 Os_TE_826177 Chr1 25672564 25672565 + RIRE7_LTR 7615 0.0007 (2/2948) 0 * * Os_TE_826170 Chr1 25671063 25671062 + ORSgTETN00200005 1121 0.0033 (10/2991) 0 * Os_TE_826169 Os_TE_826169 Chr1 25671059 25671060 + CACTA-B 1103 0.0037 (11/2991) 0 * Os_TE_826170 Os_TE_826168 Chr1 25670332 25670110 + ORSgTEMT02400014 229 0.2389 (714/2989) 1 Intact Os_TE_826167 Os_TE_826167 Chr1 25670108 25670332 - ORSgTEMT02400246 177 0.2369 (708/2989) 1 Intact Os_TE_826168 Os_TE_826143 Chr1 25664751 25653448 - RIRE2_LTR 11306 0.2397 (690/2878) 1 Intact * Os_TE_826133 Chr1 25653172 25653171 + TRUNCATOR 2918 0.0003 (1/2973) 0 * Os_TE_826132 Os_TE_826132 Chr1 25653171 25653172 - TRUNCATOR 2918 0.0003 (1/2974) 0 * Os_TE_826133 Os_TE_826131 Chr1 25653028 25653027 - ORSgTEMT02400246 177 0.4394 (1304/2968) 0 * * Os_TE_826115 Chr1 25643594 25643593 - NONAME 312 0.0017 (5/2996) 0 * Os_TE_826114 Os_TE_826114 Chr1 25643563 25643564 + NONAME 312 0.0017 (5/2996) 0 * Os_TE_826115 Os_TE_826088 Chr1 25629090 25629091 + ORSgTEMT05000092 279 0.0018 (5/2752) 0 * Os_TE_826087 Os_TE_826087 Chr1 25629088 25629087 - SUSU 279 0.0014 (4/2783) 0 * Os_TE_826088 Os_TE_826086 Chr1 25628948 25628949 + ORSgTETNOOT00908 242 0.4486 (1301/2900) 0 * * Os_TE_826082 Chr1 25627954 25627953 - COPIA2-LTR_OS 6433 0.0003 (1/2882) 0 * * Os_TE_826077 Chr1 25626412 25626413 - ATLANTYS-LTR_OS 13740 0.0017 (5/2978) 0 * Os_TE_826076 Os_TE_826076 Chr1 25626408 25626407 + ATLANTYS-LTR_OS 13740 0.0017 (5/2981) 0 * Os_TE_826077 Os_TE_826074 Chr1 25625739 25625738 + COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * * Os_TE_826072 Chr1 25625339 25625338 + SZ-58LTR 114 0.0020 (6/2980) 0 * * Os_TE_826064 Chr1 25624453 25624454 - STOWAWAY12_OS 312 0.0020 (5/2454) 0 * * Os_TE_826053 Chr1 25618734 25618733 - TEMPINDAS 4259 0.0017 (5/2979) 0 * * Os_TE_826035 Chr1 25614725 25614726 + TRUNCATOR2_LTR 2904 0.0014 (4/2943) 0 * Os_TE_826034 Os_TE_826034 Chr1 25614721 25614720 - TRUNCATOR2_LTR 2904 0.0017 (5/2964) 0 * Os_TE_826035 Os_TE_825951 Chr1 25566858 25573312 - OSTONOR1_LTR 6440 0.2485 (745/2998) 1 Intact * Os_TE_825895 Chr1 25547946 25546561 + CACTA-H 1152 0.1938 (580/2993) 1 Intact Os_TE_825894 Os_TE_825894 Chr1 25546561 25547946 - CACTA-M 1129 0.1947 (583/2994) 1 Intact Os_TE_825895 Os_TE_825879 Chr1 25542392 25542393 + MPING 430 0.0003 (1/2874) 0 * * Os_TE_825844 Chr1 25529610 25529611 + OSTE20 496 0.0035 (10/2876) 0 * Os_TE_825843 Os_TE_825843 Chr1 25529606 25529605 + OSTE20 496 0.0035 (10/2876) 0 * Os_TE_825844 Os_TE_825826 Chr1 25523308 25523307 + ORSgTEMT00901844 250 0.0007 (2/2986) 0 * * Os_TE_825817 Chr1 25515070 25515071 - CACTA-H 1152 0.0003 (1/2984) 0 * * Os_TE_825816 Chr1 25514762 25514763 + SC-4_LTR 5218 0.0040 (12/2988) 0 * Os_TE_825815 Os_TE_825815 Chr1 25514758 25514757 - SC-4_LTR 5218 0.0040 (12/2993) 0 * Os_TE_825816 Os_TE_825814 Chr1 25511897 25511896 - STOWAWAY51_OS 246 0.0003 (1/2996) 0 * Os_TE_825813 Os_TE_825813 Chr1 25511891 25511892 + STOWAWAY51_OS 246 0.0003 (1/2994) 0 * Os_TE_825814 Os_TE_825789 Chr1 25501337 25501336 - DNAUN1_OS 408 0.0013 (4/2995) 0 * * Os_TE_825785 Chr1 25495404 25495405 - RETROSAT2LTRA 3112 0.0443 (126/2844) 0 * * Os_TE_825770 Chr1 25491539 25491540 - MUDRN3_OS 903 0.0431 (122/2833) 0 * * Os_TE_825765 Chr1 25489874 25489873 + ORSgTEMT01601591 242 0.0007 (2/2983) 0 * Os_TE_825764 Os_TE_825764 Chr1 25489868 25489869 + STOWAWAY51_OS 246 0.0010 (3/2982) 0 * Os_TE_825765 Os_TE_825763 Chr1 25489129 25489130 + RIREX_LTR 8828 0.0003 (1/2992) 0 * Os_TE_825762 Os_TE_825762 Chr1 25489125 25489124 - RIREX_LTR 8828 0.0003 (1/2995) 0 * Os_TE_825763 Os_TE_825748 Chr1 25486246 25486247 + RIRE3_LTR 12054 0.0030 (9/2992) 0 * * Os_TE_825746 Chr1 25485999 25486000 + SZ-67LTR 1540 0.5292 (1497/2829) 0 * * Os_TE_825741 Chr1 25484767 25484768 + ORSiTERTOOT00034 791 0.0010 (3/2930) 0 * Os_TE_825740 Os_TE_825740 Chr1 25484763 25484762 - SZ-22_LTR 4403 0.0010 (3/2953) 0 * Os_TE_825741 Os_TE_825720 Chr1 25473388 25473389 + ORSgTEMT00900917 208 0.0003 (1/2970) 0 * * Os_TE_825703 Chr1 25464028 25464029 - COPI2_LTR 4733 0.0284 (34/1198) -1 * Os_TE_825702 Os_TE_825702 Chr1 25464024 25464023 + COPI2_LTR 4733 0.0216 (33/1527) -1 * Os_TE_825703 Os_TE_825691 Chr1 25457784 25457785 + EnSpm-13_OS 11171 0.0010 (3/2963) 0 * * Os_TE_825690 Chr1 25457515 25457514 - ORSiTEMT01300001 950 0.0010 (3/2992) 0 * * Os_TE_825684 Chr1 25455789 25455790 + RIREX_LTR 8828 0.0040 (12/2978) 0 * Os_TE_825683 Os_TE_825683 Chr1 25455785 25455784 - RIREX_LTR 8828 0.0040 (12/2978) 0 * Os_TE_825684 Os_TE_825676 Chr1 25452591 25452590 - ORSgTEMT01601432 239 0.0003 (1/2904) 0 * * Os_TE_825657 Chr1 25444917 25444918 - INDITTO 263 0.0003 (1/2991) 0 * Os_TE_825656 Os_TE_825656 Chr1 25444915 25444914 + INDITTO 263 0.0003 (1/2995) 0 * Os_TE_825657 Os_TE_825651 Chr1 25439495 25439494 + COPI2_LTR 4733 0.0003 (1/2997) 0 * * Os_TE_825624 Chr1 25431226 25431225 + MPING 430 0.0003 (1/2959) 0 * * Os_TE_825622 Chr1 25430065 25430066 + RIRE2_LTR 11306 0.1619 (485/2996) 0 * Os_TE_825621 Os_TE_825621 Chr1 25430061 25430060 - RIRE2_LTR 11306 0.1578 (471/2985) 0 * Os_TE_825622 Os_TE_825581 Chr1 25411595 25411594 - CLOUD-2 711 0.0013 (4/2976) 0 * * Os_TE_825543 Chr1 25383103 25383102 - ORSgTEMT01600317 232 0.0030 (9/2999) 0 * * Os_TE_825532 Chr1 25379032 25379033 + ORSgTEMT00700003 350 0.1619 (473/2922) 0 * * Os_TE_825472 Chr1 25355633 25355634 - SC-3_LTR 5748 0.0013 (4/2984) 0 * Os_TE_825471 Os_TE_825471 Chr1 25355629 25355628 + ORSiTERTOOT00296 5553 0.0013 (4/2979) 0 * Os_TE_825472 Os_TE_825460 Chr1 25351689 25351688 - STOWAWAY51_OS 246 0.0003 (1/2984) 0 * Os_TE_825459 Os_TE_825459 Chr1 25351682 25351683 + STOWAWAY51_OS 246 0.0003 (1/2982) 0 * Os_TE_825460 Os_TE_825404 Chr1 25315898 25315899 + OSTE33 1012 0.0479 (143/2986) 0 * Os_TE_825403 Os_TE_825403 Chr1 25315889 25315888 + OSTE33 1012 0.0346 (102/2952) 0 * Os_TE_825404 Os_TE_825401 Chr1 25315823 25315824 + STOWAWAY51_OS 246 0.0004 (1/2799) 0 * * Os_TE_825346 Chr1 25300620 25300619 - RIREX_LTR 8828 0.0004 (1/2636) 0 * * Os_TE_825342 Chr1 25299436 25299435 - ORSgTEMT02400179 221 0.0018 (5/2836) 0 * Os_TE_825341 Os_TE_825341 Chr1 25299434 25299435 - ORSgTEMT02400092 225 0.0018 (5/2818) 0 * Os_TE_825342 Os_TE_825320 Chr1 25288257 25288258 + INDITTO 263 0.0017 (5/2902) 0 * Os_TE_825319 Os_TE_825319 Chr1 25288255 25288254 - INDITTO 263 0.0017 (5/2877) 0 * Os_TE_825320 Os_TE_825299 Chr1 25281787 25281788 - INDITTO 263 0.4117 (1233/2995) 0 * Os_TE_825298 Os_TE_825298 Chr1 25281785 25281784 + INDITTO 263 0.4149 (1244/2998) 0 * Os_TE_825299 Os_TE_825283 Chr1 25277516 25277515 + CACTA-B 1103 0.0050 (15/2986) 0 * * Os_TE_825250 Chr1 25274007 25274006 + RETRO2A_LTR 12895 0.0772 (230/2979) 0 * * Os_TE_825247 Chr1 25273823 25273824 - AMYLTP 383 0.0013 (4/2979) 0 * Os_TE_825246 Os_TE_825246 Chr1 25273815 25273814 + AMYLTP 383 0.0017 (5/2979) 0 * Os_TE_825247 Os_TE_825238 Chr1 25267700 25268189 - OSTE20 496 0.2349 (647/2754) 1 Intact * Os_TE_825214 Chr1 25261541 25261112 - MPING 430 0.0165 (47/2841) 1 Intact Os_TE_825213 Os_TE_825213 Chr1 25261112 25261541 + MPING 430 0.0176 (50/2849) 1 Intact Os_TE_825214 Os_TE_825204 Chr1 25259220 25259221 - ORSgTEMT02400179 221 0.4591 (1371/2986) 0 * Os_TE_825203 Os_TE_825203 Chr1 25259219 25259218 - TYPEM 227 0.4583 (1369/2987) 0 * Os_TE_825204 Os_TE_825201 Chr1 25258118 25258119 - INDITTO 263 0.0040 (12/2998) 0 * Os_TE_825200 Os_TE_825200 Chr1 25258116 25258115 + INDITTO 263 0.0040 (12/2998) 0 * Os_TE_825201 Os_TE_825099 Chr1 25229141 25229142 + SC-8_LTR 4951 0.0003 (1/2982) 0 * Os_TE_825098 Os_TE_825098 Chr1 25229137 25229136 - SC-8_LTR 4951 0.0003 (1/2985) 0 * Os_TE_825099 Os_TE_825093 Chr1 25225857 25225856 - TRUNCATOR 2918 0.5515 (1537/2787) 0 * Os_TE_825092 Os_TE_825092 Chr1 25225856 25225857 + TRUNCATOR 2918 0.5912 (1753/2965) 0 * Os_TE_825093 Os_TE_825058 Chr1 25196104 25196105 + RETROSAT2LTR 12796 0.0573 (138/2408) 0 * * Os_TE_825047 Chr1 25193258 25193259 - HARB-1_OS 5166 0.0060 (18/2997) 0 * Os_TE_825046 Os_TE_825046 Chr1 25193256 25193255 + HARB-1_OS 5166 0.0063 (19/2998) 0 * Os_TE_825047 Os_TE_825045 Chr1 25191558 25191557 + ORSiTETNOOT00128 2115 0.0004 (1/2693) 0 * * Os_TE_825039 Chr1 25187831 25187830 + COPI2_LTR 4733 0.0003 (1/2997) 0 * * Os_TE_825009 Chr1 25180357 25180358 - RIRE3_LTR 12054 0.0052 (15/2899) 0 * Os_TE_825008 Os_TE_825008 Chr1 25180354 25180353 + RIRE3_LTR 12054 0.0049 (14/2879) 0 * Os_TE_825009 Os_TE_824993 Chr1 25167960 25167961 + RIRE2_LTR 11306 0.0007 (2/2957) 0 * * Os_TE_824980 Chr1 25164713 25164712 + TRUNCATOR 2918 0.0011 (3/2850) 0 * * Os_TE_824967 Chr1 25163133 25163134 - COPIA2-LTR_OS 6433 0.0003 (1/2978) 0 * * Os_TE_824966 Chr1 25163097 25163098 + ORSiTERTOOT00074 4935 0.0003 (1/2962) 0 * Os_TE_824965 Os_TE_824965 Chr1 25163093 25163092 - ORSiTERTOOT00074 4935 0.0003 (1/2966) 0 * Os_TE_824966 Os_TE_824916 Chr1 25139158 25139159 - RETRO2_LTR 12874 0.0013 (4/2970) 0 * Os_TE_824915 Os_TE_824915 Chr1 25139154 25139153 + RETRO2_LTR 12874 0.0013 (4/2968) 0 * Os_TE_824916 Os_TE_824872 Chr1 25122293 25122294 + INDITTO 263 0.0014 (4/2940) 0 * * Os_TE_824870 Chr1 25122091 25122092 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_824869 Os_TE_824869 Chr1 25122087 25122086 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_824870 Os_TE_824868 Chr1 25121896 25121895 + ORSgTETNOOT01834 251 0.0013 (4/2993) 0 * * Os_TE_824866 Chr1 25120378 25120377 + COPI2_LTR 4733 0.0003 (1/2992) 0 * * Os_TE_824865 Chr1 25119697 25119698 + ORSgTETNOOT00908 242 0.0101 (30/2967) 0 * * Os_TE_824857 Chr1 25115510 25115511 - STOWAWAY44_OS 240 0.0012 (1/830) 0 * * Os_TE_824855 Chr1 25112988 25112674 - Cassandra_OS-LTR 764 0.2198 (652/2966) 1 Solo_LTR Os_TE_824854 Os_TE_824854 Chr1 25112674 25112988 + Cassandra_OS-LTR 764 0.2218 (655/2953) 1 Solo_LTR Os_TE_824855 Os_TE_824852 Chr1 25112576 25099692 - RETRO2_LTR 12874 0.2173 (645/2968) 1 Intact Os_TE_824833 Os_TE_824833 Chr1 25099692 25112576 + RETRO2_LTR 12874 0.2151 (640/2976) 1 Intact Os_TE_824852 Os_TE_824826 Chr1 25097481 25093641 - RETROSAT4_LTR 13504 0.2233 (643/2880) 1 Solo_LTR Os_TE_824822 Os_TE_824822 Chr1 25093642 25097481 + RETROSAT4_LTR 13504 0.2154 (616/2860) 1 Solo_LTR Os_TE_824826 Os_TE_824821 Chr1 25093540 25093541 + RETROSAT2LTR 12796 0.0500 (143/2862) 0 * Os_TE_824820 Os_TE_824820 Chr1 25093538 25093537 - RETROSAT2LTR 12796 0.0563 (161/2858) 0 * Os_TE_824821 Os_TE_824818 Chr1 25093036 25093037 - Cassandra_OS-LTR 764 0.0540 (160/2965) 0 * Os_TE_824817 Os_TE_824817 Chr1 25093032 25093031 + SZ-35LTR 3853 0.0529 (157/2966) 0 * Os_TE_824818 Os_TE_824813 Chr1 25091843 25091842 + HELITRON7_OS 10153 0.0003 (1/2993) 0 * Os_TE_824812 Os_TE_824812 Chr1 25091839 25091840 - HELITRON7_OS 10153 0.0003 (1/2988) 0 * Os_TE_824813 Os_TE_824810 Chr1 25091095 25091096 - ORSgTEMT00100312 345 0.0004 (1/2614) 0 * * Os_TE_824808 Chr1 25090168 25090169 + NDNA2TNA_OS 346 0.7347 (2171/2955) 0 * Os_TE_824807 Os_TE_824807 Chr1 25090167 25090166 - NDNA2TNA_OS 346 0.7273 (2102/2890) 0 * Os_TE_824808 Os_TE_824764 Chr1 25070655 25070656 - SZ-22_LTR 4403 0.0014 (3/2087) 0 * Os_TE_824763 Os_TE_824763 Chr1 25070651 25070650 + ORSiTERTOOT00226 792 0.0013 (3/2376) 0 * Os_TE_824764 Os_TE_824753 Chr1 25065059 25065060 - RETROSAT4_LTR 13504 0.0522 (156/2986) 0 * Os_TE_824752 Os_TE_824752 Chr1 25065055 25065054 + RETROSAT4_LTR 13504 0.0510 (152/2978) 0 * Os_TE_824753 Os_TE_824745 Chr1 25063227 25063228 - ORSgTETN00200001 10994 0.0003 (1/2998) 0 * Os_TE_824744 Os_TE_824744 Chr1 25063225 25063224 + SPMLIKE 10989 0.0003 (1/2996) 0 * Os_TE_824745 Os_TE_824729 Chr1 25059324 25059325 + TWIFBIG 3567 0.0559 (165/2951) 0 * Os_TE_824728 Os_TE_824728 Chr1 25059317 25059316 - ORSiTETNOOT00200 3563 0.0493 (145/2939) 0 * Os_TE_824729 Os_TE_824724 Chr1 25056964 25056963 + COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * * Os_TE_824720 Chr1 25055331 25055332 - RETRO2A_LTR 12895 0.0251 (75/2984) 0 * Os_TE_824719 Os_TE_824719 Chr1 25055327 25055326 + RETRO2A_LTR 12895 0.0251 (75/2984) 0 * Os_TE_824720 Os_TE_824716 Chr1 25053364 25053365 + RIREX_LTR 8828 0.0003 (1/2939) 0 * Os_TE_824715 Os_TE_824715 Chr1 25053360 25053359 - RIREX_LTR 8828 0.0003 (1/2908) 0 * Os_TE_824716 Os_TE_824711 Chr1 25052803 25053034 + ORSgTEMT01600227 232 0.8941 (2651/2965) 1 Intact * Os_TE_824705 Chr1 25050874 25050873 - RETROSAT2LTR 12796 0.0007 (2/2712) 0 * * Os_TE_824702 Chr1 25049606 25049607 - MPING 430 0.0004 (1/2824) 0 * Os_TE_824701 Os_TE_824701 Chr1 25049604 25049603 + MPING 430 0.0003 (1/2953) 0 * Os_TE_824702 Os_TE_824685 Chr1 25039473 25039472 - TRUNCATOR 2918 0.0405 (116/2865) 0 * Os_TE_824684 Os_TE_824684 Chr1 25039472 25039473 + TRUNCATOR 2918 0.0899 (269/2993) 0 * Os_TE_824685 Os_TE_824665 Chr1 25025797 25025798 + SPMLIKE 10989 0.0017 (5/2999) 0 * Os_TE_824664 Os_TE_824664 Chr1 25025795 25025794 - ORSgTETN00200001 10994 0.0017 (5/2996) 0 * Os_TE_824665 Os_TE_824659 Chr1 25023726 25023727 + SZ-48LTR 3632 0.1692 (507/2997) 0 * Os_TE_824658 Os_TE_824658 Chr1 25023722 25023721 - SZ-48LTR 3632 0.1724 (517/2999) 0 * Os_TE_824659 Os_TE_824626 Chr1 25011869 25011870 - ORSiTERTOOT00074 4935 0.0003 (1/2995) 0 * Os_TE_824625 Os_TE_824625 Chr1 25011865 25011864 + ORSiTERTOOT00074 4935 0.0003 (1/2994) 0 * Os_TE_824626 Os_TE_824602 Chr1 24993654 24993655 + TRUNCATOR 2918 0.1569 (470/2996) 0 * * Os_TE_824600 Chr1 24991872 24991873 + SETARIA 1402 0.0007 (2/2983) 0 * Os_TE_824599 Os_TE_824599 Chr1 24991864 24991863 + SETARIA 1402 0.0007 (2/2987) 0 * Os_TE_824600 Os_TE_824596 Chr1 24989994 24989995 - SC-8_LTR 4951 0.0003 (1/2995) 0 * Os_TE_824595 Os_TE_824595 Chr1 24989990 24989989 + SC-8_LTR 4951 0.0003 (1/2997) 0 * Os_TE_824596 Os_TE_824594 Chr1 24989023 24989024 - RIREX_LTR 8828 0.0003 (1/2994) 0 * Os_TE_824593 Os_TE_824593 Chr1 24989019 24989018 + RIREX_LTR 8828 0.0003 (1/2995) 0 * Os_TE_824594 Os_TE_824591 Chr1 24988540 24988541 + ORSiTERTOOT00381 4988 0.0003 (1/2999) 0 * Os_TE_824590 Os_TE_824590 Chr1 24988536 24988535 - SC-8_LTR 4951 0.0003 (1/2999) 0 * Os_TE_824591 Os_TE_824587 Chr1 24987049 24987050 + SZ-55_LTR 10318 0.0003 (1/2986) 0 * * Os_TE_824574 Chr1 24980721 24980722 + ORSgTETNOOT00908 242 0.0003 (1/2987) 0 * * Os_TE_824566 Chr1 24976813 24976814 - RETROSAT4_LTR 13504 0.0264 (79/2995) 0 * Os_TE_824565 Os_TE_824565 Chr1 24976809 24976808 + RETROSAT4_LTR 13504 0.0254 (76/2994) 0 * Os_TE_824566 Os_TE_824561 Chr1 24974294 24974295 - TYPEM 227 0.0007 (2/2969) 0 * * Os_TE_824559 Chr1 24972577 24972578 + RETROSAT4_LTR 13504 0.7804 (2307/2956) 0 * * Os_TE_824548 Chr1 24971340 24971339 + ORSgTEMT01601122 212 0.0007 (2/2994) 0 * * Os_TE_824538 Chr1 24969333 24969334 + ORSgTEMT01601591 242 0.0003 (1/2993) 0 * * Os_TE_824534 Chr1 24967134 24967135 - COPI2_LTR 4733 0.0007 (2/2994) 0 * Os_TE_824533 Os_TE_824533 Chr1 24967130 24967129 + COPI2_LTR 4733 0.0007 (2/2996) 0 * Os_TE_824534 Os_TE_824512 Chr1 24958210 24958209 - NDNA2TNA_OS 346 0.0005 (1/2019) 0 * * Os_TE_824502 Chr1 24955004 24955005 - ORSgTEMT01700794 153 0.0004 (1/2692) 0 * * Os_TE_824486 Chr1 24951307 24951308 + ORSgTETNOOT00032 218 0.0543 (162/2983) 0 * * Os_TE_824482 Chr1 24949151 24949150 + ORSgTEMT00501027 149 0.0007 (2/2960) 0 * * Os_TE_824457 Chr1 24937390 24937391 - MPING 430 0.0003 (1/2978) 0 * Os_TE_824456 Os_TE_824456 Chr1 24937388 24937387 + MPING 430 0.0003 (1/2984) 0 * Os_TE_824457 Os_TE_824435 Chr1 24931429 24931430 + AMYLTP 383 0.0588 (176/2992) 0 * * Os_TE_824426 Chr1 24925918 24925919 - ORSgTEMT00600304 361 0.7821 (2293/2932) 0 * Os_TE_824425 Os_TE_824425 Chr1 24925917 24925916 - CASTAWAY 364 0.7816 (2266/2899) 0 * Os_TE_824426 Os_TE_824383 Chr1 24907866 24907867 + COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_824382 Os_TE_824382 Chr1 24907862 24907861 - COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_824383 Os_TE_824380 Chr1 24906678 24906679 - ORSgTEMT00500675 140 0.0007 (2/2997) 0 * * Os_TE_824353 Chr1 24898759 24898758 - COPIA1-LTR_OS 9292 0.0003 (1/2989) 0 * * Os_TE_824344 Chr1 24890848 24890847 + ORSgTEMT01701104 154 0.0003 (1/2991) 0 * * Os_TE_824342 Chr1 24890841 24890840 + ORSgTEMT01700044 149 0.0003 (1/2986) 0 * * Os_TE_824341 Chr1 24890588 24890587 - NDNA1TNA_OS 334 0.0003 (1/2976) 0 * Os_TE_824340 Os_TE_824340 Chr1 24890547 24890548 + NDNA1TNA_OS 334 0.0003 (1/2996) 0 * Os_TE_824341 Os_TE_824339 Chr1 24890343 24890344 + ORSiTEMT01000008 242 0.7893 (2356/2985) 0 * Os_TE_824338 Os_TE_824338 Chr1 24890340 24890339 - ORSgTETNOOT02565 240 0.7891 (2353/2982) 0 * Os_TE_824339 Os_TE_824331 Chr1 24888453 24888454 - RETROSAT2LTR 12796 0.0577 (143/2480) -1 * Os_TE_824330 Os_TE_824330 Chr1 24888451 24888450 + RETROSAT2LTR 12796 0.0071 (16/2250) -1 * Os_TE_824331 Os_TE_824304 Chr1 24883267 24883268 + MuDR4_OS 7610 0.0007 (2/2993) 0 * Os_TE_824303 Os_TE_824303 Chr1 24883260 24883259 - MuDR4_OS 7610 0.0007 (2/2992) 0 * Os_TE_824304 Os_TE_824298 Chr1 24880251 24880252 - INDITTO 263 0.1066 (319/2993) 0 * Os_TE_824297 Os_TE_824297 Chr1 24880249 24880248 + INDITTO 263 0.1054 (316/2997) 0 * Os_TE_824298 Os_TE_824268 Chr1 24875721 24875722 + TYPEU4 402 0.3604 (1078/2991) 0 * Os_TE_824267 Os_TE_824267 Chr1 24875712 24875711 - TYPEU1 380 0.3570 (1066/2986) 0 * Os_TE_824268 Os_TE_824266 Chr1 24874697 24874698 - LINE-7_OS 7090 0.0013 (4/2982) 0 * * Os_TE_824256 Chr1 24872179 24872180 - TYPEG 427 0.0008 (2/2386) 0 * * Os_TE_824249 Chr1 24869159 24869160 - ORSgTEMT01602413 239 0.0003 (1/2981) 0 * * Os_TE_824248 Chr1 24869102 24869101 - STOWAWAY51_OS 246 0.0003 (1/2994) 0 * Os_TE_824247 Os_TE_824247 Chr1 24869096 24869097 + STOWAWAY51_OS 246 0.0003 (1/2995) 0 * Os_TE_824248 Os_TE_824236 Chr1 24867910 24867909 + STOWAWAY9_OS 235 0.0014 (4/2960) 0 * Os_TE_824235 Os_TE_824235 Chr1 24867909 24867910 + ORSgTEMT01400031 216 0.0017 (5/2966) 0 * Os_TE_824236 Os_TE_824233 Chr1 24867893 24867894 - ORSgTEMT00901071 248 0.0007 (2/2957) 0 * * Os_TE_824227 Chr1 24866465 24866466 + MPING 430 0.0007 (2/2993) 0 * Os_TE_824226 Os_TE_824226 Chr1 24866463 24866462 - MPING 430 0.0007 (2/2992) 0 * Os_TE_824227 Os_TE_824225 Chr1 24864778 24864779 - MPING 430 0.0007 (2/2990) 0 * Os_TE_824224 Os_TE_824224 Chr1 24864776 24864775 + MPING 430 0.0007 (2/2988) 0 * Os_TE_824225 Os_TE_824219 Chr1 24860063 24860062 - RETROSAT3_LTR 11537 0.0003 (1/2896) 0 * * Os_TE_824218 Chr1 24860041 24860040 + TRUNCATOR 2918 0.0028 (8/2902) 0 * Os_TE_824217 Os_TE_824217 Chr1 24860040 24860041 - TRUNCATOR 2918 0.0024 (7/2883) 0 * Os_TE_824218 Os_TE_824209 Chr1 24858604 24858605 + MPING 430 0.0003 (1/2988) 0 * Os_TE_824208 Os_TE_824208 Chr1 24858602 24858601 - MPING 430 0.0003 (1/2988) 0 * Os_TE_824209 Os_TE_824206 Chr1 24857744 24857743 + ORSgTEMT01601591 242 0.0003 (1/2995) 0 * Os_TE_824205 Os_TE_824205 Chr1 24857738 24857739 + STOWAWAY51_OS 246 0.0003 (1/2995) 0 * Os_TE_824206 Os_TE_824175 Chr1 24848105 24848104 + RETRO1_LTR 8314 0.0027 (8/2945) 0 * * Os_TE_824162 Chr1 24839052 24839053 - SZ-4_LTR 5991 0.0011 (3/2853) 0 * Os_TE_824161 Os_TE_824161 Chr1 24839048 24839047 + SZ-4_LTR 5991 0.0010 (3/2895) 0 * Os_TE_824162 Os_TE_824160 Chr1 24838665 24838666 - STOWAWAY45_OS 266 0.0007 (2/2983) 0 * * Os_TE_824159 Chr1 24838359 24838360 + RETRO2_LTR 12874 0.0070 (21/2996) 0 * Os_TE_824158 Os_TE_824158 Chr1 24838355 24838354 - RETRO2_LTR 12874 0.0067 (20/2997) 0 * Os_TE_824159 Os_TE_824119 Chr1 24821155 24821156 - ORSgTEMT00100124 360 0.0007 (2/2957) 0 * * Os_TE_824118 Chr1 24821065 24821066 + ORSgTETNOOT00908 242 0.0003 (1/2971) 0 * * Os_TE_824106 Chr1 24808446 24808445 + ORSgTERT00200924 3299 0.0003 (1/2949) 0 * * Os_TE_824101 Chr1 24805475 24805474 + CLOUD 734 0.0003 (1/2858) 0 * * Os_TE_824092 Chr1 24804331 24804330 - F524 291 0.0003 (1/2992) 0 * * Os_TE_824090 Chr1 24804058 24804059 + STOWAWAY51_OS 246 0.7869 (2345/2980) 0 * * Os_TE_824082 Chr1 24802589 24802588 - OSTE14 885 0.0010 (3/2983) 0 * * Os_TE_824043 Chr1 24792009 24792010 + MERMITE18B 1306 0.0007 (2/2865) 0 * * Os_TE_824039 Chr1 24789942 24789941 - ORSgTEMT01601208 238 0.7858 (2333/2969) 0 * Os_TE_824038 Os_TE_824038 Chr1 24789932 24789933 + ORSgTEMT01601505 238 0.7801 (2260/2897) 0 * Os_TE_824039 Os_TE_824024 Chr1 24785262 24785261 + STOWAWAY44_OS 240 0.0007 (2/2982) 0 * * Os_TE_824017 Chr1 24780466 24780467 - ORSiTERTOOT00404 4839 0.0007 (2/2998) 0 * Os_TE_824016 Os_TE_824016 Chr1 24780462 24780461 + ORSiTERTOOT00404 4839 0.0007 (2/2995) 0 * Os_TE_824017 Os_TE_824015 Chr1 24780200 24779771 + MPING 430 0.0167 (50/2998) 1 Intact Os_TE_824014 Os_TE_824014 Chr1 24779771 24780200 - MPING 430 0.0167 (50/2996) 1 Intact Os_TE_824015 Os_TE_824013 Chr1 24779712 24779713 + ORSgTEMT00901844 250 0.0007 (2/2994) 0 * * Os_TE_824012 Chr1 24779629 24779628 - ORSgTEMT00900099 250 0.0007 (2/2998) 0 * * Os_TE_824010 Chr1 24779567 24774794 - RETROFIT2_LTR 4774 0.2282 (684/2997) 1 Intact Os_TE_824008 Os_TE_824008 Chr1 24774794 24779567 + RETROFIT2_LTR 4774 0.2280 (683/2996) 1 Intact Os_TE_824010 Os_TE_824006 Chr1 24773295 24773296 - CASLET 354 0.0013 (4/2987) 0 * Os_TE_824005 Os_TE_824005 Chr1 24773293 24773292 + CASLET 354 0.0017 (5/2987) 0 * Os_TE_824006 Os_TE_823997 Chr1 24768777 24768776 + ORSgTEMT01601591 242 0.0003 (1/2996) 0 * Os_TE_823996 Os_TE_823996 Chr1 24768774 24768775 + ORSgTEMT01601591 242 0.0003 (1/2992) 0 * Os_TE_823997 Os_TE_823990 Chr1 24762501 24762502 + RETRO2A_LTR 12895 0.0003 (1/2994) 0 * Os_TE_823989 Os_TE_823989 Chr1 24762497 24762496 - RETRO1_LTR 8314 0.0003 (1/2993) 0 * Os_TE_823990 Os_TE_823976 Chr1 24759958 24759957 - TRUNCATOR 2918 0.1982 (584/2947) 0 * Os_TE_823975 Os_TE_823975 Chr1 24759957 24759958 + TRUNCATOR 2918 0.2075 (618/2979) 0 * Os_TE_823976 Os_TE_823963 Chr1 24755063 24754650 + ORSgTEMT00300063 413 0.2114 (632/2990) 1 Intact Os_TE_823961 Os_TE_823961 Chr1 24754644 24755061 + ORSgTEMT00300069 394 0.2135 (639/2993) 1 Intact Os_TE_823963 Os_TE_823960 Chr1 24753666 24753665 + STOWAWAY50_OS 174 0.5270 (488/926) 0 * * Os_TE_823954 Chr1 24752811 24752812 + COPIA2-LTR_OS 6433 0.3795 (1135/2991) 0 * Os_TE_823953 Os_TE_823953 Chr1 24752807 24752806 - COPIA2-LTR_OS 6433 0.3753 (1120/2984) 0 * Os_TE_823954 Os_TE_823949 Chr1 24752479 24752478 + RIREX_LTR 8828 0.0007 (2/2997) 0 * * Os_TE_823940 Chr1 24750840 24750841 - ORSiTEMT01300001 950 0.0005 (1/1956) 0 * * Os_TE_823939 Chr1 24750425 24749917 + DS-RICE3N 525 0.2154 (637/2957) 1 Intact * Os_TE_823935 Chr1 24748434 24747173 - SZLTR 1249 0.2246 (662/2947) 1 Intact * Os_TE_823913 Chr1 24738055 24738054 + ORSiTERTOOT00137 717 0.0022 (6/2719) 0 * * Os_TE_823911 Chr1 24737366 24737365 - RETRO2A_LTR 12895 0.0004 (1/2570) 0 * * Os_TE_823891 Chr1 24730891 24730892 + AMYLTP 383 0.1676 (472/2816) 0 * Os_TE_823890 Os_TE_823890 Chr1 24730883 24730882 - AMYLTP 383 0.1768 (473/2676) 0 * Os_TE_823891 Os_TE_823885 Chr1 24728914 24728913 - DEBOAT 110 0.0007 (2/2992) 0 * * Os_TE_823863 Chr1 24721360 24721361 + STOWAWAY20_OS 278 0.0009 (2/2224) 0 * * Os_TE_823860 Chr1 24720854 24720855 + ORSgTEMT01602288 241 0.5031 (1478/2938) 0 * * Os_TE_823855 Chr1 24720369 24720370 + OLO24 345 0.0007 (2/2991) 0 * * Os_TE_823849 Chr1 24719696 24719695 + OLO24 345 0.0007 (2/2967) 0 * * Os_TE_823834 Chr1 24708961 24708960 + MERMITEA 1710 0.0007 (2/2987) 0 * * Os_TE_823830 Chr1 24705908 24705907 - STOWAWAY43_OS 233 0.7810 (2321/2972) 0 * Os_TE_823829 Os_TE_823829 Chr1 24705905 24705906 + STOWAWAY43_OS 233 0.0184 (13/706) 0 * Os_TE_823830 Os_TE_823786 Chr1 24695948 24695949 + SC-8_LTR 4951 0.0003 (1/2989) 0 * Os_TE_823785 Os_TE_823785 Chr1 24695944 24695943 - SC-8_LTR 4951 0.0003 (1/2990) 0 * Os_TE_823786 Os_TE_823715 Chr1 24667750 24667749 - ORSgTEMT00700002 381 0.0061 (18/2953) 0 * Os_TE_823714 Os_TE_823714 Chr1 24667743 24667744 + ORSgTEMT00700017 386 0.0052 (15/2886) 0 * Os_TE_823715 Os_TE_823701 Chr1 24664671 24664672 + ORSgTETNOOT00908 242 0.0003 (1/2988) 0 * * Os_TE_823687 Chr1 24659470 24659469 - STOWAWAY51_OS 246 0.0003 (1/2976) 0 * * Os_TE_823613 Chr1 24634932 24634933 + ORSiTERTOOT00296 5553 0.0003 (1/2990) 0 * Os_TE_823612 Os_TE_823612 Chr1 24634928 24634927 - SC-3_LTR 5748 0.0003 (1/2989) 0 * Os_TE_823613 Os_TE_823603 Chr1 24628831 24628832 - INDITTO 263 0.0003 (1/2987) 0 * Os_TE_823602 Os_TE_823602 Chr1 24628829 24628828 + INDITTO 263 0.0003 (1/2987) 0 * Os_TE_823603 Os_TE_823591 Chr1 24626702 24626703 - ORSgTEMT00502237 143 0.0007 (2/2999) 0 * * Os_TE_823571 Chr1 24615640 24615641 - COPIA2-LTR_OS 6433 0.0003 (1/2981) 0 * Os_TE_823570 Os_TE_823570 Chr1 24615636 24615635 + COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * Os_TE_823571 Os_TE_823567 Chr1 24612667 24612666 + NDNA1TNA_OS 334 0.0622 (186/2989) 0 * Os_TE_823566 Os_TE_823566 Chr1 24612666 24612667 + ORSgTEMT00100272 356 0.0609 (182/2988) 0 * Os_TE_823567 Os_TE_823564 Chr1 24612468 24612469 - STOWAWAY44_OS 240 0.0003 (1/2988) 0 * * Os_TE_823562 Chr1 24611498 24611499 + TRUNCATOR 2918 0.0014 (2/1395) 0 * * Os_TE_823530 Chr1 24606219 24606218 - ORSgTETNOOT00053 263 0.0003 (1/2949) 0 * * Os_TE_823527 Chr1 24602155 24602154 - TNR2A 152 0.0007 (2/2990) 0 * * Os_TE_823519 Chr1 24594457 24594458 + COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_823518 Os_TE_823518 Chr1 24594453 24594452 - COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_823519 Os_TE_823517 Chr1 24593496 24593497 - RIREX_LTR 8828 0.0003 (1/2995) 0 * Os_TE_823516 Os_TE_823516 Chr1 24593492 24593491 + RIREX_LTR 8828 0.0003 (1/2998) 0 * Os_TE_823517 Os_TE_823500 Chr1 24585401 24585402 - ORSgTETNOOT01607 258 0.0007 (2/2988) 0 * Os_TE_823499 Os_TE_823499 Chr1 24585400 24585399 + ORSgTETNOOT00670 249 0.0007 (2/2983) 0 * Os_TE_823500 Os_TE_823498 Chr1 24584417 24584418 - RIREX_LTR 8828 0.0347 (100/2878) 0 * Os_TE_823497 Os_TE_823497 Chr1 24584413 24584412 + RIREX_LTR 8828 0.0338 (97/2868) 0 * Os_TE_823498 Os_TE_823491 Chr1 24581171 24581172 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_823490 Os_TE_823490 Chr1 24581167 24581166 + COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_823491 Os_TE_823483 Chr1 24576932 24576931 - F569 228 0.0145 (43/2962) 0 * Os_TE_823482 Os_TE_823482 Chr1 24576889 24576890 + F569 228 0.0155 (46/2971) 0 * Os_TE_823483 Os_TE_823481 Chr1 24575979 24575978 + COPI2_LTR 4733 0.0003 (1/2906) 0 * * Os_TE_823449 Chr1 24557300 24557301 + HELITRON8_OS 8831 0.0003 (1/2988) 0 * * Os_TE_823417 Chr1 24544210 24544211 + STOWAWAY13_OS 251 0.0007 (2/2990) 0 * Os_TE_823416 Os_TE_823416 Chr1 24544209 24544208 - STOWAWAY13_OS 251 0.0007 (2/2992) 0 * Os_TE_823417 Os_TE_823410 Chr1 24538808 24538807 + OSTE15 1168 0.0007 (2/2980) 0 * * Os_TE_823405 Chr1 24534498 24534499 + STOWAWAY46_OS 154 0.7823 (2336/2986) 0 * * Os_TE_823404 Chr1 24534429 24534428 - STOWAWAY9_OS 235 0.0007 (2/2997) 0 * Os_TE_823403 Os_TE_823403 Chr1 24534428 24534429 - ORSgTEMT01400014 209 0.0007 (2/2995) 0 * Os_TE_823404 Os_TE_823394 Chr1 24532905 24532904 + AMYLTP 383 0.7229 (1059/1465) -1 * * Os_TE_823392 Chr1 24532613 24532377 - ORSgTEMT01601208 238 0.5146 (1042/2025) -1 Intact * Os_TE_823367 Chr1 24527626 24527625 - ORSgTEMT00502214 125 0.0007 (2/2857) 0 * * Os_TE_823365 Chr1 24527058 24527059 - SZ-37_LTR 12001 0.0011 (1/926) -1 * * Os_TE_823345 Chr1 24523317 24523318 + SINE9_OS 293 0.0007 (2/2954) 0 * Os_TE_823344 Os_TE_823344 Chr1 24523299 24523298 - SINE9_OS 293 0.0007 (2/2929) 0 * Os_TE_823345 Os_TE_823312 Chr1 24515565 24515564 - ORSgTEMT00501356 145 0.0007 (2/2921) 0 * Os_TE_823311 Os_TE_823311 Chr1 24515564 24515565 - ORSgTEMT00500675 140 0.0007 (2/2900) 0 * Os_TE_823312 Os_TE_823272 Chr1 24502933 24502932 - TYPEH 309 0.0007 (2/2990) 0 * * Os_TE_823241 Chr1 24480065 24480066 - COPIA2-LTR_OS 6433 0.0010 (3/2973) 0 * Os_TE_823240 Os_TE_823240 Chr1 24480061 24480060 + COPIA2-LTR_OS 6433 0.0010 (3/2973) 0 * Os_TE_823241 Os_TE_823228 Chr1 24470873 24470874 - DITTO 244 0.0007 (2/2970) 0 * * Os_TE_823183 Chr1 24452102 24452103 + TNR2A 152 0.0003 (1/2986) 0 * * Os_TE_823173 Chr1 24450817 24450555 + INDITTO 263 0.2062 (618/2997) 1 Intact Os_TE_823171 Os_TE_823171 Chr1 24450555 24450817 - INDITTO 263 0.2055 (615/2993) 1 Intact Os_TE_823173 Os_TE_823161 Chr1 24445159 24445160 + ORSgTETNOOT01930 140 0.0007 (2/2984) 0 * Os_TE_823160 Os_TE_823160 Chr1 24445157 24445156 - ORSgTETNOOT01930 140 0.0007 (2/2982) 0 * Os_TE_823161 Os_TE_823156 Chr1 24442196 24442197 + NDNA1TNA_OS 334 0.0486 (145/2986) 0 * Os_TE_823155 Os_TE_823155 Chr1 24442194 24442193 - NDNA1TNA_OS 334 0.0505 (151/2993) 0 * Os_TE_823156 Os_TE_823146 Chr1 24440725 24440726 + HARB-1_OS 5166 0.0011 (3/2826) 0 * Os_TE_823145 Os_TE_823145 Chr1 24440723 24440722 - HARB-1_OS 5166 0.0013 (3/2272) 0 * Os_TE_823146 Os_TE_823114 Chr1 24415533 24415534 - STOWAWAY43_OS 233 0.0003 (1/2978) 0 * * Os_TE_823110 Chr1 24413307 24413306 - ORSgTEMT00100582 334 0.0235 (70/2973) 0 * * Os_TE_823098 Chr1 24412356 24412357 + TYPEU4 402 0.0007 (2/2938) 0 * Os_TE_823097 Os_TE_823097 Chr1 24412348 24412347 - TYPEU1 380 0.0007 (2/2933) 0 * Os_TE_823098 Os_TE_823095 Chr1 24410915 24410916 + ORSgTETNOOT00908 242 0.3210 (957/2981) 0 * * Os_TE_823080 Chr1 24402356 24402357 + SEVERIN 768 0.0007 (2/2959) 0 * Os_TE_823079 Os_TE_823079 Chr1 24402348 24402347 - SEVERIN 768 0.0007 (2/2960) 0 * Os_TE_823080 Os_TE_823073 Chr1 24400763 24400764 + MPING 430 0.0003 (1/2991) 0 * Os_TE_823072 Os_TE_823072 Chr1 24400761 24400760 - MPING 430 0.0003 (1/2986) 0 * Os_TE_823073 Os_TE_823056 Chr1 24393177 24393176 - COPI2_LTR 4733 0.0003 (1/2947) 0 * * Os_TE_823055 Chr1 24391841 24391842 - COPIA2-LTR_OS 6433 0.0013 (4/2982) 0 * Os_TE_823054 Os_TE_823054 Chr1 24391837 24391836 + COPIA2-LTR_OS 6433 0.0010 (3/2943) 0 * Os_TE_823055 Os_TE_823047 Chr1 24390850 24390849 + ORSgTEMT00900648 236 0.0010 (3/2961) 0 * * Os_TE_823041 Chr1 24388351 24388352 + JOUZHEN 596 0.0007 (2/2989) 0 * * Os_TE_823037 Chr1 24387145 24387146 + COPIA2-LTR_OS 6433 0.0003 (1/2880) 0 * * Os_TE_823021 Chr1 24373904 24373905 + ORSgTEMT00500144 149 0.0007 (2/2968) 0 * * Os_TE_823014 Chr1 24372304 24372305 - OLO24 345 0.0008 (2/2520) 0 * * Os_TE_822992 Chr1 24365500 24365501 + AMYLTP 383 0.0014 (4/2942) 0 * Os_TE_822991 Os_TE_822991 Chr1 24365492 24365491 - AMYLTP 383 0.0017 (5/2941) 0 * Os_TE_822992 Os_TE_822976 Chr1 24362527 24362528 - ORSgTEMT02400148 214 0.0003 (1/2988) 0 * * Os_TE_822968 Chr1 24357791 24357790 + OLO24B 335 0.0003 (1/2955) 0 * * Os_TE_822955 Chr1 24351190 24351191 + MERMITEA 1710 0.0007 (2/2998) 0 * Os_TE_822954 Os_TE_822954 Chr1 24351182 24351181 + MERMITEA 1710 0.0007 (2/2999) 0 * Os_TE_822955 Os_TE_822950 Chr1 24347570 24347569 - ORSgTEMT01602430 234 0.0007 (2/2945) 0 * * Os_TE_822940 Chr1 24345208 24345207 + ORSgTEMT00900533 246 0.0004 (1/2788) 0 * * Os_TE_822926 Chr1 24338897 24338896 + ORSgTEMT01602083 237 0.0007 (2/2987) 0 * * Os_TE_822905 Chr1 24331601 24331600 - STOWAWAY51_OS 246 0.0003 (1/2986) 0 * * Os_TE_822882 Chr1 24323441 24323442 + TWIFB1 3737 0.0007 (2/2977) 0 * * Os_TE_822871 Chr1 24320710 24320711 + RETROSAT2LTR 12796 0.7537 (2185/2899) 0 * Os_TE_822870 Os_TE_822870 Chr1 24320708 24320707 - RETROSAT2LTR 12796 0.7621 (2268/2976) 0 * Os_TE_822871 Os_TE_822867 Chr1 24320111 24320112 - TRUNCATOR 2918 0.0526 (143/2721) 0 * * Os_TE_822864 Chr1 24319036 24319037 + ORSgTEMT01601591 242 0.0004 (1/2857) 0 * * Os_TE_822855 Chr1 24313299 24313300 - ORSgTEMT00901345 248 0.0003 (1/2862) 0 * * Os_TE_822848 Chr1 24310365 24310366 - ORSgTEMT01601493 303 0.0007 (2/2970) 0 * * Os_TE_822834 Chr1 24306970 24306969 - COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * * Os_TE_822830 Chr1 24306478 24306479 + HARB-1_OS 5166 0.0003 (1/2986) 0 * Os_TE_822829 Os_TE_822829 Chr1 24306476 24306475 - HARB-1_OS 5166 0.0003 (1/2987) 0 * Os_TE_822830 Os_TE_822781 Chr1 24300142 24300143 - ORSiTETNOOT00134 607 0.0004 (1/2855) 0 * Os_TE_822780 Os_TE_822780 Chr1 24300135 24300134 + TWIF 586 0.0003 (1/2864) 0 * Os_TE_822781 Os_TE_822768 Chr1 24289312 24289311 + MDM2 312 0.0007 (2/2983) 0 * * Os_TE_822766 Chr1 24288920 24288919 - ORSgTETN00200001 10994 0.5319 (1582/2974) 0 * Os_TE_822765 Os_TE_822765 Chr1 24288919 24288920 + CACTA-B 1103 0.5309 (1583/2982) 0 * Os_TE_822766 Os_TE_822762 Chr1 24286998 24286999 - ORSiTERT00200154 9386 0.0148 (44/2982) 0 * Os_TE_822761 Os_TE_822761 Chr1 24286992 24286991 + TRUNCATOR 2918 0.0148 (44/2981) 0 * Os_TE_822762 Os_TE_822758 Chr1 24285779 24285780 + ORSgTETNOOT00908 242 0.0059 (17/2904) 0 * * Os_TE_822750 Chr1 24278821 24278820 + ORSgTEMT00501511 150 0.0003 (1/2983) 0 * * Os_TE_822748 Chr1 24278002 24278003 - ORSgTEMT01600902 239 0.0003 (1/2989) 0 * * Os_TE_822747 Chr1 24277782 24277783 - MPING 430 0.0003 (1/2985) 0 * * Os_TE_822745 Chr1 24277711 24277712 + MPING 430 0.0010 (3/2992) 0 * Os_TE_822744 Os_TE_822744 Chr1 24277709 24277708 - MPING 430 0.0010 (3/2988) 0 * Os_TE_822745 Os_TE_822732 Chr1 24274033 24274034 + DEBOAT 110 0.0007 (2/2988) 0 * * Os_TE_822719 Chr1 24265950 24265949 + ORSiTERTOOT00028 8600 0.0007 (2/2975) 0 * * Os_TE_822642 Chr1 24228840 24228841 - SINE6_OS 119 0.0017 (2/1189) 0 * * Os_TE_822641 Chr1 24228798 24228799 - COPIA2-LTR_OS 6433 0.0004 (1/2637) 0 * Os_TE_822640 Os_TE_822640 Chr1 24228794 24228793 + COPIA2-LTR_OS 6433 0.0004 (1/2496) 0 * Os_TE_822641 Os_TE_822616 Chr1 24224481 24224482 - GAIJIN 147 0.0010 (3/2878) 0 * * Os_TE_822526 Chr1 24182197 24182196 - ORSgTEMT01400014 209 0.1028 (308/2997) 0 * * Os_TE_822524 Chr1 24180497 24180498 - ORSiTERTOOT00441 4741 0.0027 (8/2998) 0 * Os_TE_822523 Os_TE_822523 Chr1 24180493 24180492 + ORSiTERTOOT00441 4741 0.0027 (8/2999) 0 * Os_TE_822524 Os_TE_822515 Chr1 24178678 24178679 - CRATA 4786 0.0007 (2/2996) 0 * Os_TE_822514 Os_TE_822514 Chr1 24178671 24178670 + CRATA 4786 0.0007 (2/2997) 0 * Os_TE_822515 Os_TE_822497 Chr1 24175784 24175783 - ORSgTETN00200002 7303 0.0003 (1/2981) 0 * * Os_TE_822479 Chr1 24171805 24171806 - ORSiTETNOOT00200 3563 0.0198 (55/2782) 0 * Os_TE_822478 Os_TE_822478 Chr1 24171798 24171797 + TWIF 586 0.0254 (71/2794) 0 * Os_TE_822479 Os_TE_822477 Chr1 24171761 24171762 + TWIFB1 3737 0.0441 (125/2837) 0 * * Os_TE_822475 Chr1 24171467 24171466 - SZ-4_LTR 5991 0.0004 (1/2854) 0 * * Os_TE_822473 Chr1 24171272 24171273 - ORSiTERT00100062 5674 0.0092 (27/2927) 0 * Os_TE_822472 Os_TE_822472 Chr1 24171268 24171267 + OSTONOR1_LTR 6440 0.0065 (19/2930) 0 * Os_TE_822473 Os_TE_822469 Chr1 24167398 24167397 - TNR2A 152 0.0007 (2/2911) 0 * * Os_TE_822461 Chr1 24163269 24163268 - ORSgTEMT00500520 147 0.0007 (2/2985) 0 * * Os_TE_822460 Chr1 24163183 24163182 + ORSgTEMT01601122 212 0.2496 (743/2977) 0 * * Os_TE_822415 Chr1 24124670 24124669 + ID-2 308 0.0007 (2/2989) 0 * * Os_TE_822407 Chr1 24123063 24123064 - ORSgTEMT00501581 147 0.0003 (1/2993) 0 * * Os_TE_822377 Chr1 24117926 24117927 + INDITTO 263 0.1922 (455/2367) 0 * Os_TE_822376 Os_TE_822376 Chr1 24117924 24117923 - INDITTO 263 0.1874 (442/2358) 0 * Os_TE_822377 Os_TE_822363 Chr1 24113687 24113688 - ORSiTETNOOT00134 607 0.0004 (1/2535) 0 * Os_TE_822362 Os_TE_822362 Chr1 24113680 24113679 + TWIF 586 0.0004 (1/2555) 0 * Os_TE_822363 Os_TE_822347 Chr1 24105830 24105829 - ORSiTERTOOT00367 5639 0.0007 (2/2903) 0 * * Os_TE_822346 Chr1 24104787 24104786 + ORSgTEMT01602141 239 0.0003 (1/2900) 0 * * Os_TE_822328 Chr1 24099831 24099830 + SZ-62LTR 3649 0.1152 (331/2874) 0 * * Os_TE_822300 Chr1 24095283 24095284 + STOWAWAY11_OS 292 0.0007 (2/2970) 0 * Os_TE_822299 Os_TE_822299 Chr1 24095282 24095281 - STOWAWAY11_OS 292 0.0007 (2/2971) 0 * Os_TE_822300 Os_TE_822290 Chr1 24092381 24092382 + TNR2A 152 0.0460 (137/2977) 0 * * Os_TE_822289 Chr1 24092371 24092372 - HARB-1_OS 5166 0.0017 (5/2970) 0 * * Os_TE_822288 Chr1 24092365 24092364 - TNR2A 152 0.0464 (138/2973) 0 * * Os_TE_822283 Chr1 24091680 24091681 - MuDR4_OS 7610 0.2176 (634/2913) 0 * Os_TE_822282 Os_TE_822282 Chr1 24091672 24091671 - MuDR4_OS 7610 0.1940 (551/2840) 0 * Os_TE_822283 Os_TE_822254 Chr1 24086701 24086702 + RETRO2A_LTR 12895 0.0487 (137/2813) 0 * Os_TE_822253 Os_TE_822253 Chr1 24086697 24086696 - RETRO1_LTR 8314 0.0449 (126/2806) 0 * Os_TE_822254 Os_TE_822248 Chr1 24084889 24084888 + STOWAWAY51_OS 246 0.0003 (1/2887) 0 * Os_TE_822247 Os_TE_822247 Chr1 24084881 24084882 - STOWAWAY51_OS 246 0.0003 (1/2879) 0 * Os_TE_822248 Os_TE_822245 Chr1 24084773 24084774 - STOWAWAY51_OS 246 0.0003 (1/2869) 0 * Os_TE_822244 Os_TE_822244 Chr1 24084770 24084769 - ORSgTEMT01600531 236 0.0003 (1/2858) 0 * Os_TE_822245 Os_TE_822243 Chr1 24084606 24084327 - F770 284 0.7852 (2336/2975) 1 Intact Os_TE_822242 Os_TE_822242 Chr1 24084327 24084606 + F770 284 0.7842 (2315/2952) 1 Intact Os_TE_822243 Os_TE_822218 Chr1 24071441 24071658 - ORSgTEMT01701348 105 0.7780 (2330/2995) 1 Intact * Os_TE_822204 Chr1 24062969 24062970 + ORSgTEMT01700637 157 0.2086 (589/2823) 0 * * Os_TE_822202 Chr1 24062936 24062072 - CACTA-J 1159 0.7952 (2248/2827) 1 Intact Os_TE_822200 Os_TE_822200 Chr1 24062070 24062934 - CACTA-J 1159 0.7865 (2276/2894) 1 Intact Os_TE_822202 Os_TE_822173 Chr1 24050052 24050051 + RIREX_LTR 8828 0.0030 (9/2996) 0 * * Os_TE_822172 Chr1 24049114 24049115 - MPING 430 0.0003 (1/2984) 0 * * Os_TE_822159 Chr1 24046173 24046172 + ORSiTEMT00300001 383 0.0482 (142/2946) 0 * * Os_TE_822155 Chr1 24044770 24044769 - RIRE5-LTR_OS 6427 0.0004 (1/2810) 0 * * Os_TE_822154 Chr1 24044764 24044765 - RIRE2_LTR 11306 0.2614 (734/2808) 0 * * Os_TE_822149 Chr1 24041360 24041361 - RIREX_LTR 8828 0.1076 (304/2826) 0 * * Os_TE_822142 Chr1 24039999 24040000 + COPIA2-LTR_OS 6433 0.0004 (1/2839) 0 * Os_TE_822141 Os_TE_822141 Chr1 24039995 24039994 - COPIA2-LTR_OS 6433 0.0004 (1/2839) 0 * Os_TE_822142 Os_TE_822101 Chr1 24027553 24027554 + SPMLIKE 10989 0.0477 (134/2812) 0 * Os_TE_822100 Os_TE_822100 Chr1 24027551 24027550 - ORSgTETN00200001 10994 0.0450 (126/2798) 0 * Os_TE_822101 Os_TE_822071 Chr1 24014936 24014935 + ORSgTETNOOT02577 232 0.0010 (2/2096) 0 * * Os_TE_822070 Chr1 24014927 24014926 + ORSgTETNOOT00241 236 0.0005 (1/2116) 0 * * Os_TE_822062 Chr1 24013432 24013431 + RETROSAT2LTRA 3112 0.0010 (3/2923) 0 * * Os_TE_822051 Chr1 24010052 24010053 + AMYLTP 383 0.4677 (1282/2741) 0 * Os_TE_822050 Os_TE_822050 Chr1 24010044 24010043 - AMYLTP 383 0.4370 (1286/2943) 0 * Os_TE_822051 Os_TE_822021 Chr1 23997189 23996104 + RETRO2_LTR 12874 0.5167 (1334/2582) 1 Solo_LTR Os_TE_822020 Os_TE_822020 Chr1 23996104 23997193 - RETRO2_LTR 12874 0.4881 (1229/2518) 1 Solo_LTR Os_TE_822021 Os_TE_822009 Chr1 23992220 23992221 + NDNA1TNA_OS 334 0.0031 (9/2948) 0 * Os_TE_822008 Os_TE_822008 Chr1 23992218 23992217 - NDNA1TNA_OS 334 0.0033 (10/2987) 0 * Os_TE_822009 Os_TE_821974 Chr1 23984224 23984225 + TESSBIG 4057 0.0027 (8/2992) 0 * Os_TE_821973 Os_TE_821973 Chr1 23984217 23984216 - TESSBIG 4057 0.0037 (11/2997) 0 * Os_TE_821974 Os_TE_821956 Chr1 23977446 23977447 - HARB-1_OS 5166 0.0003 (1/2992) 0 * Os_TE_821955 Os_TE_821955 Chr1 23977444 23977443 + HARB-1_OS 5166 0.0003 (1/2990) 0 * Os_TE_821956 Os_TE_821948 Chr1 23972636 23972637 - MPING 430 0.0003 (1/2993) 0 * Os_TE_821947 Os_TE_821947 Chr1 23972634 23972633 + MPING 430 0.0003 (1/2990) 0 * Os_TE_821948 Os_TE_821945 Chr1 23969501 23969500 - TELIA 141 0.0003 (1/2968) 0 * * Os_TE_821936 Chr1 23966197 23966198 + ORSgTERTOOT00009 12852 0.1986 (593/2986) 0 * Os_TE_821935 Os_TE_821935 Chr1 23966193 23966192 - RETRO2_LTR 12874 0.2033 (609/2995) 0.06 * Os_TE_821936 Os_TE_821933 Chr1 23964313 23964314 - NDNA1TNA_OS 334 0.0003 (1/2949) 0 * * Os_TE_821910 Chr1 23943353 23943354 + SC-8_LTR 4951 0.0007 (2/2983) 0 * Os_TE_821909 Os_TE_821909 Chr1 23943349 23943348 - SC-8_LTR 4951 0.0007 (2/2977) 0 * Os_TE_821910 Os_TE_821873 Chr1 23927068 23927069 + ORSgTETNOOT01219 231 0.1879 (561/2986) 0 * Os_TE_821872 Os_TE_821872 Chr1 23927062 23927061 + ORSgTETNOOT00908 242 0.1844 (550/2982) 0 * Os_TE_821873 Os_TE_821857 Chr1 23922831 23922830 + TWIFB1 3737 0.0004 (1/2840) 0 * * Os_TE_821842 Chr1 23910296 23910297 + RIREX_LTR 8828 0.1712 (512/2990) 0 * Os_TE_821841 Os_TE_821841 Chr1 23910292 23910291 - RIREX_LTR 8828 0.1712 (512/2990) 0 * Os_TE_821842 Os_TE_821811 Chr1 23893339 23893340 + RETROSAT2LTR 12796 0.0005 (1/1912) 0 * * Os_TE_821804 Chr1 23890404 23890403 + SPMLIKE 10989 0.0010 (3/2875) 0 * * Os_TE_821790 Chr1 23884285 23884286 - INDITTO 263 0.0638 (191/2994) 0 * Os_TE_821789 Os_TE_821789 Chr1 23884283 23884282 - ORSgTETNOOT02417 265 0.0631 (189/2996) 0 * Os_TE_821790 Os_TE_821788 Chr1 23884274 23884275 + HARB-1_OS 5166 0.0003 (1/2995) 0 * Os_TE_821787 Os_TE_821787 Chr1 23884272 23884271 - HARB-1_OS 5166 0.0004 (1/2824) 0 * Os_TE_821788 Os_TE_821784 Chr1 23880516 23880517 - F770 284 0.0247 (74/2994) 0 * Os_TE_821783 Os_TE_821783 Chr1 23880514 23880513 + F770 284 0.0244 (73/2992) 0 * Os_TE_821784 Os_TE_821776 Chr1 23875262 23872096 + RETROSAT2LTR 12796 0.2059 (609/2958) 1 Solo_LTR Os_TE_821774 Os_TE_821774 Chr1 23872094 23875262 - RETROSAT2LTR 12796 0.2130 (635/2981) 1 Solo_LTR Os_TE_821776 Os_TE_821773 Chr1 23872043 23872042 - ORSgTEMT00900099 250 0.1341 (373/2781) 0 * * Os_TE_821763 Chr1 23869404 23869405 - OSTE33 1012 0.0010 (3/2969) 0 * Os_TE_821762 Os_TE_821762 Chr1 23869395 23869394 + OSTE33 1012 0.0010 (3/2973) 0 * Os_TE_821763 Os_TE_821761 Chr1 23869298 23869297 - NDNA1TNA_OS 334 0.0020 (6/2966) 0 * Os_TE_821760 Os_TE_821760 Chr1 23869296 23869297 + NDNA1TNA_OS 334 0.0020 (6/2956) 0 * Os_TE_821761 Os_TE_821753 Chr1 23867530 23867529 + STOWAWAY9_OS 235 0.1342 (401/2987) 0 * Os_TE_821752 Os_TE_821752 Chr1 23867527 23867528 + ORSgTEMT01400024 215 0.1283 (381/2969) 0 * Os_TE_821753 Os_TE_821749 Chr1 23867188 23867362 + TNR9 176 0.8742 (2592/2965) 1 Intact * Os_TE_821739 Chr1 23863835 23863836 + SZ-9LTR 965 0.0250 (73/2916) 0 * Os_TE_821738 Os_TE_821738 Chr1 23863831 23863830 - SZ-9LTR 965 0.0249 (72/2896) 0 * Os_TE_821739 Os_TE_821689 Chr1 23836349 23836240 - OSTE18 129 0.8735 (2569/2941) 1 Intact * Os_TE_821686 Chr1 23834199 23834200 - ORSgTETNOOT02565 240 0.5524 (1633/2956) 0 * Os_TE_821685 Os_TE_821685 Chr1 23834196 23834195 + ORSiTEMT01000008 242 0.5111 (1381/2702) 0 * Os_TE_821686 Os_TE_821683 Chr1 23834116 23834115 - TRUNCATOR2_LTR 2904 0.0003 (1/2935) 0 * * Os_TE_821639 Chr1 23822590 23822591 - RETROSAT2LTR 12796 0.0207 (54/2609) 0 * * Os_TE_821635 Chr1 23821282 23821283 - MPING 430 0.0003 (1/2994) 0 * Os_TE_821634 Os_TE_821634 Chr1 23821280 23821279 + MPING 430 0.0003 (1/2992) 0 * Os_TE_821635 Os_TE_821632 Chr1 23820849 23820848 + STOWAWAY51_OS 246 0.2573 (769/2989) 0 * Os_TE_821631 Os_TE_821631 Chr1 23820843 23820844 - STOWAWAY51_OS 246 0.2481 (737/2971) 0 * Os_TE_821632 Os_TE_821619 Chr1 23813725 23813726 + RIREX_LTR 8828 0.2560 (749/2926) 0 * * Os_TE_821614 Chr1 23812913 23812914 + ORSgTEMT00600272 361 0.1335 (398/2982) 0 * * Os_TE_821578 Chr1 23792136 23792137 - SC-8_LTR 4951 0.0007 (2/2964) 0 * * Os_TE_821573 Chr1 23788317 23788316 - TRUNCATOR 2918 0.0177 (53/2995) 0 * Os_TE_821572 Os_TE_821572 Chr1 23788316 23788317 + TRUNCATOR 2918 0.0194 (58/2997) 0 * Os_TE_821573 Os_TE_821568 Chr1 23787410 23787551 + ORSgTEMT00502094 140 0.7430 (2151/2895) 1 Intact * Os_TE_821559 Chr1 23783719 23783718 + COPIA2-LTR_OS 6433 0.0202 (55/2719) 0 * * Os_TE_821556 Chr1 23782961 23782962 + COPIA2-LTR_OS 6433 0.0017 (5/2903) 0 * * Os_TE_821544 Chr1 23782001 23782000 - RETRO2_LTR 12874 0.0020 (6/2992) 0 * * Os_TE_821543 Chr1 23780766 23780765 + TWIFB1 3737 0.0003 (1/2955) 0 * * Os_TE_821541 Chr1 23777402 23777403 - COPI2_LTR 4733 0.0007 (2/2991) 0 * Os_TE_821540 Os_TE_821540 Chr1 23777398 23777397 + COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_821541 Os_TE_821523 Chr1 23771486 23771487 - ORSiTERTOOT00332 5395 0.0003 (1/2979) 0 * Os_TE_821522 Os_TE_821522 Chr1 23771482 23771481 + ORSiTERTOOT00332 5395 0.0003 (1/2984) 0 * Os_TE_821523 Os_TE_821519 Chr1 23769934 23769728 - COWARD-3 221 0.4748 (1321/2782) 1 Intact * Os_TE_821507 Chr1 23767950 23767949 - CRATA 4786 0.0009 (1/1127) 0 * * Os_TE_821500 Chr1 23764907 23764908 - ORSgTEMT06100010 269 0.2376 (701/2950) 0 * Os_TE_821499 Os_TE_821499 Chr1 23764905 23764904 + ORSgTEMT06100010 269 0.2601 (746/2868) 0 * Os_TE_821500 Os_TE_821498 Chr1 23764808 23764809 - CLOUD 734 0.0017 (5/2959) 0 * Os_TE_821497 Os_TE_821497 Chr1 23764800 23764799 - CLOUD 734 0.0017 (5/2967) 0 * Os_TE_821498 Os_TE_821493 Chr1 23762549 23762550 + STOWAWAY51_OS 246 0.0174 (52/2994) 0 * Os_TE_821492 Os_TE_821492 Chr1 23762540 23762539 + ORSgTEMT01601591 242 0.0007 (2/2936) 0 * Os_TE_821493 Os_TE_821490 Chr1 23762458 23762459 - NDNA1TNA_OS 334 0.1697 (508/2994) 0 * Os_TE_821489 Os_TE_821489 Chr1 23762456 23762455 + NDNA1TNA_OS 334 0.1725 (516/2991) 0 * Os_TE_821490 Os_TE_821436 Chr1 23745148 23745149 - ORSiTETNOOT00200 3563 0.2709 (799/2949) 0 * Os_TE_821435 Os_TE_821435 Chr1 23745141 23745140 + TWIF 586 0.2535 (734/2896) 0 * Os_TE_821436 Os_TE_821403 Chr1 23733199 23733200 + AMYLTP 383 0.0774 (231/2986) 0 * Os_TE_821402 Os_TE_821402 Chr1 23733191 23733190 - AMYLTP 383 0.0778 (232/2983) 0 * Os_TE_821403 Os_TE_821401 Chr1 23733145 23733144 + ORSgTEMT01601591 242 0.0017 (5/2988) 0 * Os_TE_821400 Os_TE_821400 Chr1 23733142 23733143 + ORSgTEMT01601591 242 0.0013 (4/2992) 0 * Os_TE_821401 Os_TE_821399 Chr1 23731502 23731503 + SC-8_LTR 4951 0.0003 (1/2994) 0 * Os_TE_821398 Os_TE_821398 Chr1 23731498 23731497 - SC-8_LTR 4951 0.0003 (1/2984) 0 * Os_TE_821399 Os_TE_821380 Chr1 23723921 23723922 - RIRE2_LTR 11306 0.1405 (416/2961) 0 * Os_TE_821379 Os_TE_821379 Chr1 23723917 23723916 + RIRE2_LTR 11306 0.1410 (416/2951) 0 * Os_TE_821380 Os_TE_821378 Chr1 23723848 23723849 + CASLET 354 0.0259 (77/2977) 0 * Os_TE_821377 Os_TE_821377 Chr1 23723846 23723845 - CASLET 354 0.0255 (76/2982) 0 * Os_TE_821378 Os_TE_821375 Chr1 23723218 23723219 - INDITTO 263 0.0254 (76/2987) 0 * Os_TE_821374 Os_TE_821374 Chr1 23723216 23723215 + INDITTO 263 0.0261 (78/2992) 0 * Os_TE_821375 Os_TE_821373 Chr1 23723164 23723165 - ORSgTETN00200001 10994 0.0214 (64/2990) 0 * Os_TE_821372 Os_TE_821372 Chr1 23723162 23723161 + SPMLIKE 10989 0.0207 (62/2990) 0 * Os_TE_821373 Os_TE_821371 Chr1 23722722 23722723 + INDITTO 263 0.0003 (1/2992) 0 * Os_TE_821370 Os_TE_821370 Chr1 23722720 23722719 - INDITTO 263 0.0003 (1/2994) 0 * Os_TE_821371 Os_TE_821362 Chr1 23721247 23719979 + CACTA-H 1152 0.6416 (1912/2980) 1 Intact Os_TE_821361 Os_TE_821361 Chr1 23719975 23721247 - ORSgTETN00200001 10994 0.6348 (1879/2960) 1 Intact Os_TE_821362 Os_TE_821347 Chr1 23717151 23717150 - INDITTO 263 0.0329 (98/2980) 0 * * Os_TE_821336 Chr1 23713632 23713631 + OSTONOR1_LTR 6440 0.0473 (139/2940) 0 * * Os_TE_821331 Chr1 23711813 23711812 + ORSgTEMT00500476 150 0.7777 (2316/2978) 0 * * Os_TE_821313 Chr1 23704591 23704592 + RETRO2A_LTR 12895 0.0009 (2/2156) 0 * * Os_TE_821262 Chr1 23692621 23692620 + ORSgTETNOOT00032 218 0.0942 (255/2708) 0 * * Os_TE_821249 Chr1 23688128 23688129 - ORSgTEMT00600085 364 0.1118 (333/2979) 0 * Os_TE_821248 Os_TE_821248 Chr1 23688126 23688125 + CASTAWAY 364 0.1151 (343/2979) 0 * Os_TE_821249 Os_TE_821235 Chr1 23686349 23686111 + ORSgTEMT01602181 239 0.1976 (580/2935) -1 Intact Os_TE_821234 Os_TE_821234 Chr1 23686111 23686349 - ORSgTEMT01601432 239 0.1952 (573/2936) 1 Intact Os_TE_821235 Os_TE_821227 Chr1 23684686 23684685 + RIREX_LTR 8828 0.1154 (339/2937) 0 * * Os_TE_821205 Chr1 23678024 23678025 - ORSgTEMT01601208 238 0.2049 (597/2913) 0 * * Os_TE_821204 Chr1 23677577 23677578 + RIREX_LTR 8828 0.0003 (1/2951) 0 * * Os_TE_821193 Chr1 23675286 23675285 - ORSgTEMT00500639 148 0.0020 (6/2988) 0 * * Os_TE_821192 Chr1 23675242 23675243 + ORSgTEMT00600272 361 0.2020 (600/2970) 0 * Os_TE_821191 Os_TE_821191 Chr1 23675240 23675239 - CASTAWAY 364 0.2089 (622/2978) 0 * Os_TE_821192 Os_TE_821185 Chr1 23672857 23672858 + ORSgTEMT00901798 232 0.2050 (612/2985) 0 * * Os_TE_821178 Chr1 23668362 23668363 + ORSgTETNOOT00707 140 0.2084 (622/2984) 0 * Os_TE_821177 Os_TE_821177 Chr1 23668360 23668359 - ORSgTETNOOT00544 147 0.2103 (627/2981) 0 * Os_TE_821178 Os_TE_821171 Chr1 23667226 23667227 + SINE1OS 127 0.0327 (97/2962) 0 * * Os_TE_821167 Chr1 23666959 23666960 + ORSgTETNOOT01998 254 0.0003 (1/2932) 0 * Os_TE_821166 Os_TE_821166 Chr1 23666957 23666956 + ORSgTETNOOT01834 251 0.0003 (1/2942) 0 * Os_TE_821167 Os_TE_821163 Chr1 23666781 23666782 + STOWAWAY9_OS 235 0.0444 (130/2930) 0 * * Os_TE_821162 Chr1 23666567 23666425 - ORSgTEMT01701266 154 0.7572 (2208/2916) 1 Intact Os_TE_821160 Os_TE_821160 Chr1 23666411 23666567 + ORSgTEMT01701591 154 0.8899 (2198/2470) 1 Intact Os_TE_821162 Os_TE_821155 Chr1 23662008 23648561 - GYPSO_LTR 9828 0.3069 (628/2046) 1 Intact * Os_TE_821148 Chr1 23657418 23657419 - COPIA2-LTR_OS 6433 0.0003 (1/2981) 0 * Os_TE_821147 Os_TE_821147 Chr1 23657414 23657413 + COPIA2-LTR_OS 6433 0.0003 (1/2981) 0 * Os_TE_821148 Os_TE_821144 Chr1 23653846 23653847 - TNR2A 152 0.0045 (13/2909) 0 * * Os_TE_821141 Chr1 23651163 23651164 + RIREX_LTR 8828 0.0004 (1/2841) 0 * * Os_TE_821134 Chr1 23646563 23646562 + ORSgTEMT01602181 239 0.0009 (2/2312) 0 * * Os_TE_821131 Chr1 23643833 23643472 + ORSgTEMT00600124 361 0.5184 (1521/2934) 1 Intact * Os_TE_821126 Chr1 23639537 23639538 + OLO24 345 0.1172 (345/2944) 0 * * Os_TE_821124 Chr1 23638905 23638904 - STOWAWAY1_OS 149 0.0007 (2/2936) 0 * * Os_TE_821121 Chr1 23638056 23638057 - ORSiTETNOOT00216 3569 0.0194 (57/2944) 0 * Os_TE_821120 Os_TE_821120 Chr1 23638049 23638048 + TWIFBIG 3567 0.0254 (67/2641) 0 * Os_TE_821121 Os_TE_821101 Chr1 23635697 23635841 + ORSgTEMT00500476 150 0.8979 (2665/2968) 1 Intact * Os_TE_821090 Chr1 23627124 23626978 - ORSgTEMT01701302 154 0.8913 (2656/2980) 1 Intact * Os_TE_821084 Chr1 23622873 23622874 + HARB-1_OS 5166 0.0003 (1/2987) 0 * Os_TE_821083 Os_TE_821083 Chr1 23622871 23622870 - HARB-1_OS 5166 0.0003 (1/2983) 0 * Os_TE_821084 Os_TE_821069 Chr1 23619127 23619128 - RIREX_LTR 8828 0.0007 (2/2861) 0 * * Os_TE_821064 Chr1 23616844 23616843 - TYPEM 227 0.4581 (1344/2934) 0 * * Os_TE_821059 Chr1 23612575 23612576 - ORSgTEMT01600152 226 0.4713 (871/1848) 0 * Os_TE_821058 Os_TE_821058 Chr1 23612572 23612571 - ORSgTEMT01601432 239 0.3975 (871/2191) 0 * Os_TE_821059 Os_TE_821050 Chr1 23611376 23611375 + ORSiTERTOOT00226 792 0.0003 (1/2993) 0 * * Os_TE_821038 Chr1 23606771 23593881 - RETRO1_LTR 8314 0.1114 (181/1625) 1 Intact Os_TE_821033 Os_TE_821033 Chr1 23593881 23606771 + RETRO2A_LTR 12895 0.0629 (185/2940) 1 Intact Os_TE_821038 Os_TE_821022 Chr1 23591003 23591002 + ORSgTEMT00600160 361 0.0017 (5/2962) 0 * * Os_TE_820990 Chr1 23584371 23584372 + ORSiTERTOOT00296 5553 0.0003 (1/2993) 0 * Os_TE_820989 Os_TE_820989 Chr1 23584367 23584366 - SC-3_LTR 5748 0.0003 (1/2994) 0 * Os_TE_820990 Os_TE_820970 Chr1 23568184 23561091 - MuDR4_OS 7610 0.0622 (178/2861) 1 Intact Os_TE_820965 Os_TE_820965 Chr1 23561090 23568183 - MuDR4_OS 7610 0.0470 (133/2828) 1 Intact Os_TE_820970 Os_TE_820957 Chr1 23560084 23560085 + SZ-52_LTR 13107 0.0473 (140/2960) 0 * Os_TE_820956 Os_TE_820956 Chr1 23560080 23560079 - SZ-52_LTR 13107 0.0474 (140/2955) 0 * Os_TE_820957 Os_TE_820947 Chr1 23558525 23558524 + RIREX_LTR 8828 0.0155 (41/2653) 0 * * Os_TE_820940 Chr1 23554875 23554876 + DS-RICE4N 715 0.3756 (637/1696) 0 * * Os_TE_820927 Chr1 23543010 23543011 - NDNA1TNA_OS 334 0.0027 (8/2999) 0 * * Os_TE_820921 Chr1 23540720 23540721 - RIRE2_LTR 11306 0.0974 (259/2660) -1 * * Os_TE_820917 Chr1 23539517 23539961 + RIREX_LTR 8828 0.0987 (198/2006) 1 Solo_LTR * Os_TE_820903 Chr1 23529619 23529409 + ORSgTEMT01601122 212 0.8858 (1202/1357) 1 Intact Os_TE_820899 Os_TE_820899 Chr1 23529383 23529603 + STOWAWAY21_OS 243 0.6563 (1029/1568) 1 Intact Os_TE_820903 Os_TE_820878 Chr1 23524178 23524179 + SZ-62LTR 3649 0.1467 (439/2992) 0 * Os_TE_820877 Os_TE_820877 Chr1 23524174 23524173 - SZ-62LTR 3649 0.1457 (436/2992) 0 * Os_TE_820878 Os_TE_820868 Chr1 23521883 23521884 - INDITTO 263 0.2801 (830/2963) 0 * Os_TE_820867 Os_TE_820867 Chr1 23521881 23521880 + INDITTO 263 0.2697 (688/2551) 0 * Os_TE_820868 Os_TE_820865 Chr1 23521825 23521681 - ORSgTEMT00501356 145 0.4290 (1281/2986) 1 Intact Os_TE_820864 Os_TE_820864 Chr1 23521681 23521820 + ORSgTEMT00501356 145 0.4297 (1283/2986) 1 Intact Os_TE_820865 Os_TE_820861 Chr1 23520856 23520855 - ORSgTEMT00501204 149 0.0011 (3/2686) -1 * * Os_TE_820860 Chr1 23520770 23520769 - ORSgTEMT00500131 148 0.6332 (1635/2582) 0 * * Os_TE_820859 Chr1 23520636 23520635 - ORSgTEMT00502237 143 0.5255 (1269/2415) 0 * * Os_TE_820850 Chr1 23519268 23519267 + ORSgTEMT00900339 250 0.5473 (1528/2792) 0 * Os_TE_820849 Os_TE_820849 Chr1 23519264 23519265 + ORSgTEMT00901405 217 0.5665 (1639/2893) 0 * Os_TE_820850 Os_TE_820835 Chr1 23517087 23517318 - ORSgTEMT00900272 259 0.7534 (2236/2968) 1 Intact * Os_TE_820832 Chr1 23516878 23516879 - RIREX_LTR 8828 0.0037 (11/2974) 0 * Os_TE_820831 Os_TE_820831 Chr1 23516874 23516873 + RIREX_LTR 8828 0.0034 (10/2970) 0 * Os_TE_820832 Os_TE_820830 Chr1 23514979 23514980 - MPING 430 0.0003 (1/2983) 0 * Os_TE_820829 Os_TE_820829 Chr1 23514977 23514976 + MPING 430 0.0003 (1/2978) 0 * Os_TE_820830 Os_TE_820825 Chr1 23513238 23513239 + ORSiTERTOOT00226 792 0.0003 (1/2994) 0 * Os_TE_820824 Os_TE_820824 Chr1 23513234 23513233 - SZ-22_LTR 4403 0.0003 (1/2992) 0 * Os_TE_820825 Os_TE_820817 Chr1 23512569 23512570 - TRUNCATOR 2918 0.0493 (138/2802) 0 * * Os_TE_820811 Chr1 23512107 23512106 - COPIA2-LTR_OS 6433 0.0003 (1/2958) 0 * * Os_TE_820805 Chr1 23509328 23509329 - ORSgTEMT00901723 248 0.0010 (3/2996) 0 * * Os_TE_820802 Chr1 23508734 23502319 + COPIA2-LTR_OS 6433 0.0960 (288/2999) 1 Intact Os_TE_820799 Os_TE_820799 Chr1 23502319 23508734 - COPIA2-LTR_OS 6433 0.0964 (289/2999) 1 Intact Os_TE_820802 Os_TE_820783 Chr1 23493410 23497925 + RPO_OS 1983 0.8584 (2019/2352) 1 Intact * Os_TE_820781 Chr1 23492182 23492183 - RIRE2_LTR 11306 0.6314 (1886/2987) 0 * * Os_TE_820776 Chr1 23491422 23491423 - TRUNCATOR2_LTR 2904 0.0003 (1/2965) 0 * * Os_TE_820769 Chr1 23489730 23489731 + ORSiTERTOOT00027 10853 0.0013 (4/2993) 0 * * Os_TE_820719 Chr1 23471057 23471058 + TRUNCATOR2_LTR 2904 0.0114 (34/2991) 0 * * Os_TE_820704 Chr1 23465701 23465702 + RIREX_LTR 8828 0.0020 (6/2975) 0 * Os_TE_820703 Os_TE_820703 Chr1 23465697 23465696 - RIREX_LTR 8828 0.0017 (5/2950) 0 * Os_TE_820704 Os_TE_820677 Chr1 23458789 23458788 - OLO24 345 0.2518 (753/2990) 0 * * Os_TE_820674 Chr1 23455548 23455549 + OLO24 345 0.0057 (13/2267) 0 * Os_TE_820673 Os_TE_820673 Chr1 23455546 23455545 - OLO24 345 0.0040 (12/2964) 0 * Os_TE_820674 Os_TE_820658 Chr1 23446395 23446630 - ORSgTEMT01601834 234 0.1253 (361/2881) 1 Intact * Os_TE_820640 Chr1 23437302 23437301 + ORSgTEMT01601122 212 0.1189 (346/2911) 0 * Os_TE_820639 Os_TE_820639 Chr1 23437301 23437302 + STOWAWAY21_OS 243 0.1175 (342/2911) 0 * Os_TE_820640 Os_TE_820638 Chr1 23437097 23435966 + CACTA-B 1103 0.8859 (2602/2937) 1 Intact Os_TE_820635 Os_TE_820635 Chr1 23435962 23437094 - CACTA-M 1129 0.8876 (2613/2944) 1 Intact Os_TE_820638 Os_TE_820623 Chr1 23432428 23432429 - MPING 430 0.0010 (3/2981) 0 * Os_TE_820622 Os_TE_820622 Chr1 23432426 23432425 + MPING 430 0.0010 (3/2973) 0 * Os_TE_820623 Os_TE_820617 Chr1 23430718 23427670 + RETROSAT2LTRA 3112 0.0504 (144/2859) 1 Intact * Os_TE_820596 Chr1 23419141 23419140 - TNR2 157 0.1321 (385/2914) 0 * * Os_TE_820593 Chr1 23418262 23418261 + ORSgTEMT01601934 207 0.1150 (337/2930) 0 * Os_TE_820592 Os_TE_820592 Chr1 23418258 23418259 - ORSgTEMT01601834 234 0.1245 (369/2965) 0 * Os_TE_820593 Os_TE_820590 Chr1 23417741 23417740 - ORSgTEMT01601834 234 0.1247 (370/2966) 0 * Os_TE_820589 Os_TE_820589 Chr1 23417738 23417739 - ORSgTEMT01601432 239 0.1254 (372/2967) 0 * Os_TE_820590 Os_TE_820567 Chr1 23398183 23398182 + TRUNCATOR 2918 0.1367 (408/2984) 0 * Os_TE_820566 Os_TE_820566 Chr1 23398182 23398183 - TRUNCATOR 2918 0.1379 (408/2959) 0 * Os_TE_820567 Os_TE_820564 Chr1 23396620 23396619 + OSTE20 496 0.1307 (389/2976) 0 * * Os_TE_820562 Chr1 23394971 23394970 - DS-RICE4N 715 0.6306 (1818/2883) 0 * * Os_TE_820561 Chr1 23393763 23393762 - RETROSAT2LTRA 3112 0.2064 (612/2965) 0 * * Os_TE_820560 Chr1 23392185 23392186 - ENSPM4_OS 11610 0.2155 (640/2970) 0 * * Os_TE_820559 Chr1 23391942 23391943 - ORSgTEMT06000205 191 0.0003 (1/2969) 0 * * Os_TE_820557 Chr1 23390579 23390580 - AMYLTP 383 0.0012 (3/2426) 0 * * Os_TE_820507 Chr1 23364293 23364292 - SC-4_LTR 5218 0.0003 (1/2870) 0 * * Os_TE_820505 Chr1 23363713 23363349 + CASTAWAY 364 0.2572 (763/2967) 1 Intact Os_TE_820502 Os_TE_820502 Chr1 23363349 23363712 - ORSgTEMT00600523 366 0.2385 (699/2931) 1 Intact Os_TE_820505 Os_TE_820497 Chr1 23360086 23360085 - ORSgTEMT01700044 149 0.7939 (2277/2868) 0 * * Os_TE_820484 Chr1 23354879 23354880 + ORSgTEMT00100536 315 0.1086 (293/2699) 0 * * Os_TE_820481 Chr1 23354673 23354816 + STOWAWAY46_OS 154 0.8154 (2442/2995) 1 Intact * Os_TE_820480 Chr1 23354335 23354336 + RIRE2_LTR 11306 0.0665 (199/2994) 0 * Os_TE_820479 Os_TE_820479 Chr1 23354331 23354330 - RIRE2_LTR 11306 0.0674 (202/2995) 0 * Os_TE_820480 Os_TE_820469 Chr1 23351297 23351296 + ORSgTEMT01701591 154 0.1553 (465/2994) 0 * * Os_TE_820451 Chr1 23345680 23345681 + COPIA2-LTR_OS 6433 0.1360 (322/2368) 0 * * Os_TE_820415 Chr1 23332547 23332976 + MPING 430 0.0177 (52/2940) 1 Intact * Os_TE_820400 Chr1 23328102 23328103 + RIREX_LTR 8828 0.0004 (1/2807) 0 * Os_TE_820399 Os_TE_820399 Chr1 23328098 23328097 - RIRE2_LTR 11306 0.0004 (1/2768) 0 * Os_TE_820400 Os_TE_820392 Chr1 23323505 23323506 + INDITTO 263 0.2142 (623/2909) 0 * Os_TE_820391 Os_TE_820391 Chr1 23323503 23323502 - ORSgTETNOOT02339 261 0.2100 (628/2991) 0 * Os_TE_820392 Os_TE_820385 Chr1 23321185 23321186 - ORSgTERT00200093 390 0.0003 (1/2980) 0 * * Os_TE_820378 Chr1 23315043 23315042 - COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * * Os_TE_820360 Chr1 23303826 23303827 + TEMPINDAS 4259 0.2942 (871/2961) 0 * * Os_TE_820358 Chr1 23303164 23303163 + F770 284 0.3582 (1071/2990) 0 * * Os_TE_820357 Chr1 23303144 23303145 + MPING 430 0.0005 (1/2148) 0 * Os_TE_820356 Os_TE_820356 Chr1 23303142 23303141 - MPING 430 0.0004 (1/2596) 0 * Os_TE_820357 Os_TE_820329 Chr1 23288095 23288094 - TYPEM 227 0.0415 (124/2985) 0 * Os_TE_820328 Os_TE_820328 Chr1 23288094 23288095 - ORSgTEMT02400246 177 0.0422 (126/2988) 0 * Os_TE_820329 Os_TE_820309 Chr1 23279021 23279020 + RETRO2A_LTR 12895 0.0040 (12/2980) 0 * * Os_TE_820257 Chr1 23250434 23250435 - MDR2 6967 0.3711 (1107/2983) 0 * Os_TE_820256 Os_TE_820256 Chr1 23250426 23250425 + MDR2 6967 0.1032 (201/1947) 0 * Os_TE_820257 Os_TE_820247 Chr1 23245862 23245861 - TRUNCATOR 2918 0.0024 (7/2950) 0 * * Os_TE_820241 Chr1 23244695 23244696 + ORSiTERTOOT00174 2237 0.0007 (2/2966) 0 * * Os_TE_820240 Chr1 23244440 23244439 + STOWAWAY51_OS 246 0.0015 (4/2667) 0 * * Os_TE_820239 Chr1 23244434 23244435 + ORSgTEMT01601591 242 0.0263 (75/2848) 0 * * Os_TE_820236 Chr1 23242448 23242449 - SC-3_LTR 5748 0.0010 (3/2989) 0 * Os_TE_820235 Os_TE_820235 Chr1 23242444 23242443 + ORSiTERTOOT00296 5553 0.0010 (3/2985) 0 * Os_TE_820236 Os_TE_820228 Chr1 23238954 23238953 - STOWAWAY51_OS 246 0.0260 (74/2846) 0 * Os_TE_820227 Os_TE_820227 Chr1 23238951 23238952 - STOWAWAY51_OS 246 0.0259 (73/2817) 0 * Os_TE_820228 Os_TE_820211 Chr1 23230329 23230330 - TRUNCATOR2_LTR 2904 0.0351 (105/2994) 0 * Os_TE_820210 Os_TE_820210 Chr1 23230325 23230324 + TRUNCATOR2_LTR 2904 0.0273 (81/2964) 0 * Os_TE_820211 Os_TE_820189 Chr1 23219950 23219949 + ORSgTEMT00600160 361 0.0003 (1/2894) 0 * * Os_TE_820185 Chr1 23219404 23219403 + STOWAWAY45_OS 266 0.0031 (9/2872) 0 * * Os_TE_820163 Chr1 23216778 23216777 + ORSiTERTOOT00074 4935 0.0004 (1/2423) 0 * * Os_TE_820156 Chr1 23213767 23213768 + AMYLTP 383 0.0370 (110/2971) 0 * * Os_TE_820109 Chr1 23189139 23189138 + TNR2A 152 0.0369 (105/2846) 0 * * Os_TE_820100 Chr1 23187153 23187154 - MuDR2_OS 6770 0.0160 (43/2681) 0 * Os_TE_820099 Os_TE_820099 Chr1 23187144 23187143 + MuDR2_OS 6770 0.0925 (267/2886) 0 * Os_TE_820100 Os_TE_820080 Chr1 23173485 23173486 - AMYLTP 383 0.0010 (3/2973) 0 * Os_TE_820079 Os_TE_820079 Chr1 23173477 23173476 + AMYLTP 383 0.0010 (3/2974) 0 * Os_TE_820080 Os_TE_820067 Chr1 23167810 23167811 - ORSgTEMT01702045 137 0.0531 (158/2973) 0 * * Os_TE_820028 Chr1 23153115 23153114 + ORSiTERTOOT00034 791 0.0014 (4/2847) 0 * * Os_TE_819981 Chr1 23121253 23121252 + DS-RICE4N 715 0.0147 (42/2859) 0 * * Os_TE_819979 Chr1 23120619 23120618 + ORSgTEMT00901844 250 0.0074 (21/2826) 0 * * Os_TE_819975 Chr1 23118629 23118630 + COPI2_LTR 4733 0.0003 (1/2992) 0 * Os_TE_819974 Os_TE_819974 Chr1 23118625 23118624 - COPI2_LTR 4733 0.0003 (1/2990) 0 * Os_TE_819975 Os_TE_819971 Chr1 23115861 23115860 + ORSgTEMT01601934 207 0.0331 (96/2896) 0 * Os_TE_819970 Os_TE_819970 Chr1 23115859 23115860 + ORSgTEMT01601934 207 0.0360 (104/2886) 0 * Os_TE_819971 Os_TE_819968 Chr1 23115060 23115059 - STOWAWAY10_OS 259 0.0015 (4/2757) 0 * * Os_TE_819965 Chr1 23113658 23113659 - SC-4_LTR 5218 0.0003 (1/2923) 0 * Os_TE_819964 Os_TE_819964 Chr1 23113654 23113653 + SC-4_LTR 5218 0.0003 (1/2927) 0 * Os_TE_819965 Os_TE_819961 Chr1 23112822 23112823 + MPING 430 0.0003 (1/2977) 0 * Os_TE_819960 Os_TE_819960 Chr1 23112820 23112819 - MPING 430 0.0003 (1/2977) 0 * Os_TE_819961 Os_TE_819959 Chr1 23112737 23112738 - TYPEM 227 0.3424 (1017/2970) 0 * Os_TE_819958 Os_TE_819958 Chr1 23112736 23112735 - ORSgTEMT02400179 221 0.4184 (1018/2433) 0 * Os_TE_819959 Os_TE_819951 Chr1 23110355 23110354 + RETROSAT4_LTR 13504 0.5904 (1323/2241) 0 * * Os_TE_819950 Chr1 23109523 23109524 - ATLANTYS-LTR_OS 13740 0.0013 (4/2973) 0 * Os_TE_819949 Os_TE_819949 Chr1 23109519 23109518 + ATLANTYS-LTR_OS 13740 0.0013 (4/2971) 0 * Os_TE_819950 Os_TE_819946 Chr1 23108097 23108096 - ORSgTEMT00901723 248 0.0010 (3/2924) 0 * Os_TE_819945 Os_TE_819945 Chr1 23108095 23108096 + ORSgTEMT00900648 236 0.0010 (3/2928) 0 * Os_TE_819946 Os_TE_819936 Chr1 23104618 23104619 - STOWAWAY50_OS 174 0.4161 (1243/2987) 0 * * Os_TE_819933 Chr1 23102567 23102566 + COPI2_LTR 4733 0.0003 (1/2978) 0 * * Os_TE_819932 Chr1 23102480 23102479 - COWARD 200 0.1976 (588/2976) 0 * * Os_TE_819923 Chr1 23098871 23098870 + NDNA1TNA_OS 334 0.0113 (33/2919) 0 * Os_TE_819922 Os_TE_819922 Chr1 23098870 23098871 - ORSgTEMT00100578 341 0.0127 (37/2918) 0 * Os_TE_819923 Os_TE_819903 Chr1 23084455 23084270 - SNAP-OL3 189 0.1664 (494/2968) 1 Intact Os_TE_819901 Os_TE_819901 Chr1 23084269 23084455 + SNAP-OL3 189 0.1739 (519/2985) 1 Intact Os_TE_819903 Os_TE_819738 Chr1 23011410 23011411 + STOWAWAY51_OS 246 0.0044 (13/2966) 0 * * Os_TE_819691 Chr1 22994392 22994393 + ORSgTEMT01602188 240 0.0044 (13/2961) 0 * * Os_TE_819671 Chr1 22977362 22977361 - ORSgTEMT00900741 219 0.6731 (2014/2992) 0 * Os_TE_819670 Os_TE_819670 Chr1 22977337 22977338 + ORSgTEMT00901844 250 0.7258 (2110/2907) 0 * Os_TE_819671 Os_TE_819669 Chr1 22977325 22977326 - NDNA1TNA_OS 334 0.0287 (86/2996) 0 * Os_TE_819668 Os_TE_819668 Chr1 22977323 22977322 + NDNA1TNA_OS 334 0.0945 (86/910) 0 * Os_TE_819669 Os_TE_819663 Chr1 22976591 22976592 + ORSgTETNOOT00908 242 0.0040 (12/2971) 0 * * Os_TE_819653 Chr1 22972927 22972928 + ORSgTETNOOT00908 242 0.0003 (1/2991) 0 * Os_TE_819652 Os_TE_819652 Chr1 22972919 22972918 + ORSgTETNOOT01219 231 0.0003 (1/2991) 0 * Os_TE_819653 Os_TE_819651 Chr1 22972628 22972629 + RIRE2_LTR 11306 0.3104 (923/2974) 0 * * Os_TE_819639 Chr1 22969309 22969308 + RPO_OS 1983 0.0798 (236/2957) 0 * * Os_TE_819622 Chr1 22964385 22964384 + ID-4 284 0.2467 (737/2988) 0 * * Os_TE_819621 Chr1 22964037 22964036 - STOWAWAY44_OS 240 0.0003 (1/2997) 0 * * Os_TE_819600 Chr1 22950185 22950186 + ORSiTERTOOT00381 4988 0.0010 (3/2987) 0 * Os_TE_819599 Os_TE_819599 Chr1 22950181 22950180 - SC-8_LTR 4951 0.0010 (3/2986) 0 * Os_TE_819600 Os_TE_819591 Chr1 22947990 22947989 - TYPEM 227 0.1725 (503/2916) 0 * Os_TE_819590 Os_TE_819590 Chr1 22947989 22947990 - ORSgTEMT02400246 177 0.1783 (519/2911) 0 * Os_TE_819591 Os_TE_819564 Chr1 22932526 22932527 - STOWAWAY1_OS 149 0.0033 (10/2997) 0 * Os_TE_819563 Os_TE_819563 Chr1 22932525 22932524 + STOWAWAY1_OS 149 0.0033 (10/2999) 0 * Os_TE_819564 Os_TE_819536 Chr1 22916836 22916835 - TRUNCATOR 2918 0.0003 (1/2993) 0 * Os_TE_819535 Os_TE_819535 Chr1 22916835 22916836 + TRUNCATOR 2918 0.0003 (1/2993) 0 * Os_TE_819536 Os_TE_819526 Chr1 22911640 22911641 + SZ-40LTR 2465 0.0004 (1/2738) 0 * * Os_TE_819505 Chr1 22901318 22901319 - STOWAWAY11_OS 292 0.0004 (1/2778) 0 * * Os_TE_819484 Chr1 22891512 22891513 + RETROSAT2LTR 12796 0.0007 (2/2995) 0 * Os_TE_819483 Os_TE_819483 Chr1 22891510 22891509 - RETROSAT2LTR 12796 0.0007 (2/2994) 0 * Os_TE_819484 Os_TE_819482 Chr1 22891469 22891470 - GYPSY-A_LTR 8951 0.0003 (1/2995) 0 * Os_TE_819481 Os_TE_819481 Chr1 22891465 22891464 + SZ-40LTR 2465 0.0003 (1/2995) 0 * Os_TE_819482 Os_TE_819477 Chr1 22887692 22887693 + RIREX_LTR 8828 0.0003 (1/2993) 0 * * Os_TE_819463 Chr1 22881390 22881391 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * * Os_TE_819438 Chr1 22873185 22873186 - SZ-9LTR 965 0.0271 (81/2993) 0 * Os_TE_819437 Os_TE_819437 Chr1 22873181 22873180 - SZ-9LTR 965 0.0282 (84/2984) 0 * Os_TE_819438 Os_TE_819416 Chr1 22862643 22862644 + MPING 430 0.0004 (1/2853) 0 * Os_TE_819415 Os_TE_819415 Chr1 22862641 22862640 - MPING 430 0.0003 (1/2932) 0 * Os_TE_819416 Os_TE_819413 Chr1 22861723 22861724 - CACTA-G1 797 0.0013 (4/2993) 0 * * Os_TE_819403 Chr1 22854675 22854674 - SZ-38 8643 0.0003 (1/2926) 0 * * Os_TE_819353 Chr1 22828082 22828081 - STOWAWAY21_OS 243 0.0007 (2/2849) 0 * * Os_TE_819336 Chr1 22822663 22822664 - STOWAWAY51_OS 246 0.0017 (5/2983) 0 * * Os_TE_819322 Chr1 22814119 22814120 - EnSpm-13_OS 11171 0.0003 (1/2907) 0 * Os_TE_819321 Os_TE_819321 Chr1 22814117 22814116 + EnSpm-13_OS 11171 0.0003 (1/2896) 0 * Os_TE_819322 Os_TE_819253 Chr1 22773787 22773788 + ORSgTETNOOT02019 240 0.1569 (464/2957) 0 * Os_TE_819252 Os_TE_819252 Chr1 22773785 22773784 + ORSgTETNOOT00908 242 0.1559 (459/2945) 0 * Os_TE_819253 Os_TE_819232 Chr1 22766717 22766718 - STOWAWAY51_OS 246 0.0004 (1/2848) 0 * * Os_TE_819231 Chr1 22766076 22766075 - ORSgTEMT02400246 177 0.0003 (1/2967) 0 * Os_TE_819230 Os_TE_819230 Chr1 22766075 22766076 - TYPEM 227 0.0003 (1/2965) 0 * Os_TE_819231 Os_TE_819201 Chr1 22754491 22754490 - RETROSAT5_LTR 13878 0.0007 (2/2780) 0 * * Os_TE_819200 Chr1 22753593 22753594 + ORSgTETNOOT01998 254 0.0491 (143/2910) 0 * Os_TE_819199 Os_TE_819199 Chr1 22753591 22753590 + ORSgTETNOOT01834 251 0.0492 (143/2905) 0 * Os_TE_819200 Os_TE_819194 Chr1 22753251 22753252 - ORSgTEMT02400246 177 0.0003 (1/2981) 0 * * Os_TE_819127 Chr1 22733118 22733119 - COPIA2-LTR_OS 6433 0.0962 (287/2982) 0 * Os_TE_819126 Os_TE_819126 Chr1 22733114 22733113 + COPIA2-LTR_OS 6433 0.0948 (282/2976) 0 * Os_TE_819127 Os_TE_819094 Chr1 22714605 22714606 - STOWAWAY36_OS 268 0.0003 (1/2981) 0 * * Os_TE_819049 Chr1 22686487 22686488 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_819048 Os_TE_819048 Chr1 22686483 22686482 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_819049 Os_TE_819027 Chr1 22682251 22682252 + ORSgTETNOOT02019 240 0.4595 (1169/2544) 0 * Os_TE_819026 Os_TE_819026 Chr1 22682249 22682248 + ORSgTETNOOT00908 242 0.4807 (1269/2640) 0 * Os_TE_819027 Os_TE_819004 Chr1 22675654 22675653 + ORSgTEMT01601591 242 0.0003 (1/2932) 0 * * Os_TE_818995 Chr1 22672941 22672940 - STOWAWAY51_OS 246 0.0010 (3/2994) 0 * Os_TE_818994 Os_TE_818994 Chr1 22672938 22672939 - STOWAWAY51_OS 246 0.0010 (3/2994) 0 * Os_TE_818995 Os_TE_818988 Chr1 22671307 22671306 + TYPEU4 402 0.0565 (168/2972) 0 * * Os_TE_818985 Chr1 22670643 22670463 - ORSgTEMT02500020 192 0.8505 (2549/2997) 1 Intact * Os_TE_818973 Chr1 22668253 22668252 + INDITTO 263 0.2144 (638/2976) 0 * * Os_TE_818962 Chr1 22664847 22664846 + STOWAWAY51_OS 246 0.0010 (3/2996) 0 * Os_TE_818961 Os_TE_818961 Chr1 22664841 22664842 - STOWAWAY51_OS 246 0.0010 (3/2990) 0 * Os_TE_818962 Os_TE_818912 Chr1 22645671 22645670 - COPI2_LTR 4733 0.0003 (1/2998) 0 * * Os_TE_818901 Chr1 22640094 22640095 - COPIA2-LTR_OS 6433 0.0011 (3/2716) 0 * * Os_TE_818861 Chr1 22617278 22617279 + ORSgTEMT06100010 269 0.3320 (984/2964) 0 * Os_TE_818860 Os_TE_818860 Chr1 22617276 22617275 - ORSgTEMT06100010 269 0.3336 (987/2959) 0 * Os_TE_818861 Os_TE_818840 Chr1 22609847 22609846 - ORSgTETN00200001 10994 0.4478 (1279/2856) 0 * Os_TE_818839 Os_TE_818839 Chr1 22609846 22609847 + CACTA-B 1103 0.4494 (1293/2877) 0 * Os_TE_818840 Os_TE_818837 Chr1 22608923 22608924 - RIREX_LTR 8828 0.1599 (479/2995) 0 * Os_TE_818836 Os_TE_818836 Chr1 22608919 22608918 + RIREX_LTR 8828 0.1606 (481/2995) 0 * Os_TE_818837 Os_TE_818826 Chr1 22606415 22606416 - COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * * Os_TE_818793 Chr1 22600298 22600297 - ORSgTEMT00400006 152 0.0003 (1/2985) 0 * * Os_TE_818788 Chr1 22599344 22599343 + ORSgTEMT01601591 242 0.0003 (1/2993) 0 * Os_TE_818787 Os_TE_818787 Chr1 22599341 22599342 + ORSgTEMT01601591 242 0.0003 (1/2991) 0 * Os_TE_818788 Os_TE_818759 Chr1 22581090 22580888 - ORSgTEMT01701882 154 0.6297 (1813/2879) 1 Intact Os_TE_818753 Os_TE_818753 Chr1 22580888 22581085 - STOWAWAY50_OS 174 0.6368 (1871/2938) 1 Intact Os_TE_818759 Os_TE_818744 Chr1 22577818 22577819 - TRUNCATOR2_LTR 2904 0.0010 (2/1953) 0 * Os_TE_818743 Os_TE_818743 Chr1 22577814 22577813 + ORSiTERTOOT00028 8600 0.0007 (2/2955) 0 * Os_TE_818744 Os_TE_818727 Chr1 22563944 22563945 - COPIA2-LTR_OS 6433 0.0010 (3/2993) 0 * Os_TE_818726 Os_TE_818726 Chr1 22563940 22563939 + COPIA2-LTR_OS 6433 0.0010 (3/2994) 0 * Os_TE_818727 Os_TE_818724 Chr1 22563895 22563896 - ORSiTERT00200154 9386 0.0017 (5/2996) 0 * Os_TE_818723 Os_TE_818723 Chr1 22563889 22563888 + TRUNCATOR 2918 0.0017 (5/2994) 0 * Os_TE_818724 Os_TE_818720 Chr1 22562377 22562376 - INDITTO 263 0.0020 (6/2988) 0 * * Os_TE_818718 Chr1 22562328 22562072 - DITAILA 257 0.8714 (2609/2994) 0.86 Intact Os_TE_818714 Os_TE_818714 Chr1 22562074 22562326 - DITAILA 257 0.8699 (2595/2983) 1 Intact Os_TE_818718 Os_TE_818699 Chr1 22554262 22554263 - SC-4_LTR 5218 0.0033 (10/2996) 0 * * Os_TE_818697 Chr1 22552957 22552958 + NDNA1TNA_OS 334 0.0017 (5/2975) 0 * Os_TE_818696 Os_TE_818696 Chr1 22552955 22552954 - NDNA1TNA_OS 334 0.0017 (5/2966) 0 * Os_TE_818697 Os_TE_818679 Chr1 22545343 22545344 + BAJIELTR 4500 0.0007 (2/2998) 0 * * Os_TE_818665 Chr1 22542213 22542214 + CLOUD-7 495 0.0010 (3/2967) 0 * * Os_TE_818650 Chr1 22527678 22527677 + ORSgTEMT01701324 144 0.3714 (959/2582) -1 * * Os_TE_818619 Chr1 22508715 22520663 - TRUNCATOR 2918 0.3611 (918/2542) 1 Intact * Os_TE_818613 Chr1 22504510 22504511 + OSTE18 129 0.3563 (1051/2950) 0 * * Os_TE_818603 Chr1 22502967 22501583 + OSTE33 1012 0.3194 (952/2981) 1 Intact Os_TE_818602 Os_TE_818602 Chr1 22501583 22502967 + OSTE33 1012 0.3175 (945/2976) 1 Intact Os_TE_818603 Os_TE_818547 Chr1 22472897 22472898 + RIRE5-LTR_OS 6427 0.1489 (184/1236) 0 * Os_TE_818546 Os_TE_818546 Chr1 22472893 22472892 - RIRE5-LTR_OS 6427 0.1921 (527/2743) 0 * Os_TE_818547 Os_TE_818542 Chr1 22466339 22466338 + STOWAWAY50_OS 174 0.2889 (416/1440) 0 * * Os_TE_818539 Chr1 22464012 22464013 + AMYLTP 383 0.6430 (1920/2986) 0 * Os_TE_818538 Os_TE_818538 Chr1 22464008 22464007 - AMYLTP 383 0.6381 (1888/2959) 0 * Os_TE_818539 Os_TE_818525 Chr1 22460086 22460085 + ORSgTEMT01601934 207 0.1245 (365/2932) 0 * * Os_TE_818521 Chr1 22458196 22458197 - ORSgTEMT01602310 229 0.0004 (1/2631) 0 * * Os_TE_818499 Chr1 22449857 22449856 + TRC1 306 0.4032 (1116/2768) 0 * * Os_TE_818495 Chr1 22447145 22447146 - SC-3_LTR 5748 0.0003 (1/2996) 0 * Os_TE_818494 Os_TE_818494 Chr1 22447141 22447140 + ORSiTERTOOT00296 5553 0.0003 (1/2994) 0 * Os_TE_818495 Os_TE_818493 Chr1 22446212 22446211 + MERMITE18E 1528 0.4311 (1271/2948) 0 * * Os_TE_818478 Chr1 22442491 22442017 + OSTE30 529 0.6103 (1549/2538) 1 Intact * Os_TE_818475 Chr1 22441230 22441231 - MPING 430 0.0003 (1/2970) 0 * * Os_TE_818464 Chr1 22436933 22436774 - ORSgTEMT01701882 154 0.8023 (2402/2994) 1 Intact Os_TE_818461 Os_TE_818461 Chr1 22436781 22436933 + ORSgTEMT01701265 147 0.8042 (2402/2987) 1 Intact Os_TE_818464 Os_TE_818457 Chr1 22435683 22435684 + OSTE20 496 0.0007 (2/2854) 0 * * Os_TE_818454 Chr1 22434025 22434024 - ENSPM_OS 9843 0.2030 (605/2980) 0 * * Os_TE_818452 Chr1 22433141 22433140 + OLO24C 356 0.2224 (662/2977) 0 * Os_TE_818451 Os_TE_818451 Chr1 22433140 22433141 - ORSgTEMT00101161 337 0.2033 (596/2931) 0 * Os_TE_818452 Os_TE_818450 Chr1 22432903 22432904 + SINE03_OS 360 0.1617 (434/2684) 0 * * Os_TE_818449 Chr1 22432851 22432560 + STOWAWAY11_OS 292 0.7460 (1733/2323) 1 Intact Os_TE_818447 Os_TE_818447 Chr1 22432560 22432851 - STOWAWAY11_OS 292 0.7453 (1735/2328) 1 Intact Os_TE_818449 Os_TE_818440 Chr1 22426794 22426793 - ORSgTEMT01400022 212 0.2231 (510/2286) 0 * * Os_TE_818438 Chr1 22426572 22426571 + ORSgTEMT00500026 147 0.2286 (527/2305) 0 * * Os_TE_818435 Chr1 22426475 22426474 - CRATA 4786 0.1394 (323/2317) 0 * * Os_TE_818421 Chr1 22420359 22420360 + MPING 430 0.0004 (1/2294) 0 * Os_TE_818420 Os_TE_818420 Chr1 22420357 22420356 - MPING 430 0.0004 (1/2313) 0 * Os_TE_818421 Os_TE_818419 Chr1 22420009 22420010 + TESSBIG 4057 0.0159 (47/2960) 0 * Os_TE_818418 Os_TE_818418 Chr1 22419999 22419998 + ORSgTETNOOT01028 232 0.0149 (44/2958) 0 * Os_TE_818419 Os_TE_818415 Chr1 22418937 22418936 - TRUNCATOR 2918 0.0950 (271/2852) 0 * Os_TE_818414 Os_TE_818414 Chr1 22418936 22418937 + TRUNCATOR 2918 0.1100 (319/2899) 0 * Os_TE_818415 Os_TE_818413 Chr1 22418196 22417199 + DASIA-2 1198 0.8043 (2379/2958) 1 Intact Os_TE_818412 Os_TE_818412 Chr1 22417199 22418196 + DASIA-2 1198 0.7606 (1913/2515) 1 Intact Os_TE_818413 Os_TE_818354 Chr1 22398238 22398239 - COPIA2-LTR_OS 6433 0.0010 (3/2915) 0 * Os_TE_818353 Os_TE_818353 Chr1 22398234 22398233 + COPIA2-LTR_OS 6433 0.0010 (3/2976) 0 * Os_TE_818354 Os_TE_818352 Chr1 22398200 22398199 - ENSPM_OS 9843 0.2105 (627/2979) 0 * * Os_TE_818351 Chr1 22397854 22397853 - ORSgTERT00201216 11284 0.0007 (2/2973) 0 * * Os_TE_818340 Chr1 22397206 22397207 - RIREX_LTR 8828 0.0018 (5/2838) 0 * Os_TE_818339 Os_TE_818339 Chr1 22397202 22397201 + RIREX_LTR 8828 0.0018 (5/2827) 0 * Os_TE_818340 Os_TE_818308 Chr1 22385010 22385011 + MPING 430 0.0063 (17/2683) 0 * Os_TE_818307 Os_TE_818307 Chr1 22385008 22385007 - MPING 430 0.0064 (17/2651) 0 * Os_TE_818308 Os_TE_818299 Chr1 22380298 22380297 - RIRE5-LTR_OS 6427 0.2396 (717/2993) 0 * * Os_TE_818298 Chr1 22379163 22379164 - ORSiTERTOOT00304 6137 0.2816 (721/2560) 0 * Os_TE_818297 Os_TE_818297 Chr1 22379159 22379158 + ORSiTERTOOT00304 6137 0.2748 (697/2536) 0 * Os_TE_818298 Os_TE_818271 Chr1 22374405 22370840 + TWIFBIG 3567 0.2425 (493/2033) -1 Intact * Os_TE_818261 Chr1 22368541 22368542 + COPI2_LTR 4733 0.0004 (1/2575) 0 * Os_TE_818260 Os_TE_818260 Chr1 22368537 22368536 - COPI2_LTR 4733 0.0004 (1/2571) 0 * Os_TE_818261 Os_TE_818258 Chr1 22364386 22364387 - MPING 430 0.0007 (2/2984) 0 * Os_TE_818257 Os_TE_818257 Chr1 22364384 22364383 + MPING 430 0.0007 (2/2988) 0 * Os_TE_818258 Os_TE_818229 Chr1 22358396 22358395 + ORSgTEMT01701591 154 0.0004 (1/2400) 0 * * Os_TE_818228 Chr1 22358094 22358095 - DITTO 244 0.0014 (4/2943) 0 * * Os_TE_818221 Chr1 22350280 22350279 + AMYLTP 383 0.3576 (1066/2981) 0 * * Os_TE_818220 Chr1 22349023 22349022 + ORSgTEMT01400009 212 0.0013 (4/2980) 0 * Os_TE_818219 Os_TE_818219 Chr1 22349020 22349021 - ORSgTEMT01400014 209 0.0010 (3/2974) 0 * Os_TE_818220 Os_TE_818175 Chr1 22337326 22337327 - DITTO-2 235 0.0014 (4/2920) 0 * * Os_TE_818174 Chr1 22337215 22337214 + COPI1_LTR 4721 0.1739 (508/2921) 0 * * Os_TE_818160 Chr1 22333845 22332351 - MERMITED 1572 0.8140 (2434/2990) 1 Intact * Os_TE_818146 Chr1 22327958 22327957 - ENSPM2_OS 10580 0.1541 (431/2796) 0 * * Os_TE_818140 Chr1 22324914 22324915 - COPIA2-LTR_OS 6433 0.0007 (2/2973) 0 * * Os_TE_818072 Chr1 22305742 22305741 + STOWAWAY51_OS 246 0.0010 (3/2958) 0 * * Os_TE_818070 Chr1 22305622 22305503 + ORSgTETNOOT01778 120 0.8705 (2399/2756) 1 Intact Os_TE_818069 Os_TE_818069 Chr1 22305500 22305621 + ORSgTEMT00500201 140 0.8504 (2456/2888) 1 Intact Os_TE_818070 Os_TE_818067 Chr1 22305339 22305138 - ORSgTEMT01400033 210 0.8227 (2445/2972) 1 Intact Os_TE_818065 Os_TE_818065 Chr1 22305101 22305340 - ORSgTEMT01400022 212 0.8189 (2414/2948) 1 Intact Os_TE_818067 Os_TE_818053 Chr1 22301184 22294733 - COPIA2-LTR_OS 6433 0.3954 (1172/2964) 1 Intact * Os_TE_818046 Chr1 22292765 22292764 - STOWAWAY9_OS 235 0.0017 (4/2394) 0 * Os_TE_818045 Os_TE_818045 Chr1 22292764 22292765 - ORSgTEMT01400014 209 0.1807 (520/2878) 0 * Os_TE_818046 Os_TE_818041 Chr1 22290668 22287525 - RIRE3_LTR 12054 0.8321 (2423/2912) 1 Solo_LTR Os_TE_818032 Os_TE_818032 Chr1 22287525 22290679 + RIRE3_LTR 12054 0.8246 (2403/2914) 1 Solo_LTR Os_TE_818041 Os_TE_818003 Chr1 22282506 22282505 + CACTA-D 1038 0.2819 (807/2863) 0 * Os_TE_818002 Os_TE_818002 Chr1 22282505 22282506 - ORSgTETN00200001 10994 0.2496 (686/2748) 0 * Os_TE_818003 Os_TE_817999 Chr1 22282456 22282455 + OSTE33 1012 0.2383 (654/2744) 0 * * Os_TE_817992 Chr1 22280803 22280802 - ORSgTEMT00700002 381 0.0055 (15/2748) 0 * Os_TE_817991 Os_TE_817991 Chr1 22280796 22280797 + ORSgTEMT00700017 386 0.0052 (15/2894) 0 * Os_TE_817992 Os_TE_817863 Chr1 22237642 22237641 + ORSgTEMT01602580 283 0.0017 (5/2950) 0 * * Os_TE_817853 Chr1 22233824 22222677 - ORSgTETN00200001 10994 0.4581 (1219/2661) 1 Intact * Os_TE_817821 Chr1 22217867 22217866 - STOWAWAY13_OS 251 0.0010 (3/2869) 0 * * Os_TE_817817 Chr1 22216686 22216687 + STOWAWAY49_OS 241 0.0014 (4/2833) 0 * * Os_TE_817791 Chr1 22207650 22207649 - TRUNCATOR 2918 0.1749 (471/2693) 0 * Os_TE_817790 Os_TE_817790 Chr1 22207649 22207650 + TRUNCATOR 2918 0.0022 (5/2291) 0 * Os_TE_817791 Os_TE_817787 Chr1 22207000 22207001 + SZ-37_LTR 12001 0.0017 (5/2878) 0 * * Os_TE_817771 Chr1 22204045 22204046 - ORSgTEMT00101242 323 0.0022 (6/2686) 0 * * Os_TE_817756 Chr1 22198544 22198545 - ORSgTETNOOT00968 255 0.0020 (6/2994) 0 * * Os_TE_817654 Chr1 22146589 22146588 - ORSgTERT00201216 11284 0.0004 (1/2844) 0 * * Os_TE_817652 Chr1 22144030 22144029 + ORSgTEMT01602181 239 0.2155 (636/2951) 0 * Os_TE_817651 Os_TE_817651 Chr1 22144027 22144028 - ORSgTEMT01601432 239 0.2265 (675/2980) 0 * Os_TE_817652 Os_TE_817616 Chr1 22131885 22131886 - F569 228 0.0155 (46/2975) 0 * * Os_TE_817609 Chr1 22129480 22129479 - ORSgTEMT01601974 230 0.0011 (3/2752) 0 * * Os_TE_817608 Chr1 22129200 22129201 + TELIA 141 0.0003 (1/2967) 0 * Os_TE_817607 Os_TE_817607 Chr1 22129192 22129191 - TELIA 141 0.0003 (1/2970) 0 * Os_TE_817608 Os_TE_817596 Chr1 22118331 22118332 + MPING 430 0.0007 (2/2953) 0 * Os_TE_817595 Os_TE_817595 Chr1 22118329 22118328 - MPING 430 0.0007 (2/2962) 0 * Os_TE_817596 Os_TE_817591 Chr1 22117477 22117478 + MPING 430 0.0064 (19/2979) 0 * Os_TE_817590 Os_TE_817590 Chr1 22117475 22117474 - MPING 430 0.0054 (16/2980) 0 * Os_TE_817591 Os_TE_817588 Chr1 22116696 22116695 + RIREX_LTR 8828 0.0007 (2/2977) 0 * * Os_TE_817586 Chr1 22114998 22114999 - OSTE18 129 0.0013 (4/2998) 0 * * Os_TE_817567 Chr1 22112491 22112492 + ORSiTERTOOT00226 792 0.0004 (1/2410) 0 * Os_TE_817566 Os_TE_817566 Chr1 22112487 22112486 - SZ-22_LTR 4403 0.0003 (1/2967) 0 * Os_TE_817567 Os_TE_817561 Chr1 22109553 22109413 - TELIA 141 0.0381 (113/2964) 1 Intact Os_TE_817560 Os_TE_817560 Chr1 22109413 22109553 + TELIA 141 0.0380 (112/2945) 1 Intact Os_TE_817561 Os_TE_817533 Chr1 22103067 22103066 + ENSPM4_OS 11610 0.0010 (3/2980) 0 * * Os_TE_817520 Chr1 22101126 22101127 - COPIA2-LTR_OS 6433 0.0007 (2/2964) 0 * Os_TE_817519 Os_TE_817519 Chr1 22101122 22101121 + COPIA2-LTR_OS 6433 0.0010 (3/2968) 0 * Os_TE_817520 Os_TE_817508 Chr1 22100110 22100109 + ORSgTEMT01602181 239 0.1285 (380/2958) 0 * Os_TE_817507 Os_TE_817507 Chr1 22100107 22100108 - ORSgTEMT01601432 239 0.1278 (377/2951) 0 * Os_TE_817508 Os_TE_817496 Chr1 22094715 22094716 + COPIA2-LTR_OS 6433 0.0003 (1/2974) 0 * Os_TE_817495 Os_TE_817495 Chr1 22094711 22094710 - COPIA2-LTR_OS 6433 0.0003 (1/2982) 0 * Os_TE_817496 Os_TE_817474 Chr1 22082215 22082216 - MPING 430 0.0004 (1/2702) 0 * Os_TE_817473 Os_TE_817473 Chr1 22082213 22082212 + MPING 430 0.0004 (1/2662) 0 * Os_TE_817474 Os_TE_817472 Chr1 22082138 22082137 - STOWAWAY50_OS 174 0.0004 (1/2804) 0 * * Os_TE_817460 Chr1 22074439 22074440 - ORSiTETNOOT00134 607 0.0006 (1/1714) 0 * * Os_TE_817399 Chr1 22041943 22041942 + ORSiCMCM00100013 9728 0.0004 (1/2378) 0 * * Os_TE_817397 Chr1 22039864 22039865 - RIREX_LTR 8828 0.0019 (4/2140) 0 * * Os_TE_817374 Chr1 22027398 22027399 - MPING 430 0.0003 (1/2979) 0 * Os_TE_817373 Os_TE_817373 Chr1 22027396 22027395 + MPING 430 0.0003 (1/2969) 0 * Os_TE_817374 Os_TE_817303 Chr1 22006421 22006422 - STOWAWAY1_OS 149 0.0003 (1/2920) 0 * * Os_TE_817262 Chr1 21990591 21990590 - STOWAWAY51_OS 246 0.0007 (2/2992) 0 * Os_TE_817261 Os_TE_817261 Chr1 21990588 21990589 - STOWAWAY51_OS 246 0.0007 (2/2993) 0 * Os_TE_817262 Os_TE_817244 Chr1 21985821 21985820 + STOWAWAY51_OS 246 0.0003 (1/2950) 0 * Os_TE_817243 Os_TE_817243 Chr1 21985815 21985816 - STOWAWAY51_OS 246 0.0003 (1/2948) 0 * Os_TE_817244 Os_TE_817203 Chr1 21956298 21956297 + RIREX_LTR 8828 0.0003 (1/2994) 0 * * Os_TE_817198 Chr1 21950023 21955961 - ORSiTERTOOT00396 5939 0.3886 (1143/2941) 1 Intact * Os_TE_817190 Chr1 21945425 21945424 + RIRE2_LTR 11306 0.0007 (2/2985) 0 * * Os_TE_817189 Chr1 21945171 21945172 + ORSiTERTOOT00354 5370 0.2331 (698/2995) 0 * Os_TE_817188 Os_TE_817188 Chr1 21945167 21945166 - ORSiTERTOOT00354 5370 0.2289 (685/2992) 0 * Os_TE_817189 Os_TE_817185 Chr1 21943111 21943112 + TEMPINDAS 4259 0.2559 (765/2989) 0 * * Os_TE_817181 Chr1 21941916 21941915 - MERMITED 1572 0.0003 (1/2991) 0 * * Os_TE_817146 Chr1 21925103 21925102 + ORSgTEMT02000077 191 0.0027 (8/2970) 0 * * Os_TE_817145 Chr1 21924706 21924705 + STOWAWAY51_OS 246 0.0007 (2/2981) 0 * Os_TE_817144 Os_TE_817144 Chr1 21924700 21924701 + ORSgTEMT01601591 242 0.0007 (2/2978) 0 * Os_TE_817145 Os_TE_817136 Chr1 21917899 21917900 + TWIFB1 3737 0.0009 (2/2288) 0 * * Os_TE_817128 Chr1 21915666 21915432 + ORSgTEMT01602141 239 0.4021 (1150/2860) 1 Intact * Os_TE_817125 Chr1 21915320 21915319 - ORSgTEMT01700299 212 0.3232 (942/2915) 0 * * Os_TE_817121 Chr1 21915089 21915321 - ORSgTEMT01601208 238 0.8239 (2236/2714) 1 Intact * Os_TE_817120 Chr1 21915079 21915312 - ORSgTEMT01602413 239 0.7298 (2074/2842) 1 Intact * Os_TE_817117 Chr1 21914768 21914988 - ORSgTEMT02400179 221 0.6212 (1161/1869) 1 Intact * Os_TE_817116 Chr1 21914643 21914642 + F524 291 0.3346 (934/2791) 0 * * Os_TE_817112 Chr1 21912068 21912069 - ORSgTEMT01600790 236 0.3185 (875/2747) 0 * * Os_TE_817111 Chr1 21911808 21911807 + SEVERIN-2 1952 0.2986 (854/2860) 0 * * Os_TE_817107 Chr1 21910107 21910108 - ORSgTEMT01400014 209 0.3182 (947/2976) 0 * * Os_TE_817073 Chr1 21891880 21891881 + F569 228 0.0047 (14/2974) 0 * Os_TE_817072 Os_TE_817072 Chr1 21891878 21891877 - F569 228 0.0051 (15/2965) 0 * Os_TE_817073 Os_TE_817070 Chr1 21890891 21890892 + HARB-1_OS 5166 0.0635 (190/2994) 0 * Os_TE_817069 Os_TE_817069 Chr1 21890889 21890888 - HARB-1_OS 5166 0.0635 (190/2992) 0 * Os_TE_817070 Os_TE_817060 Chr1 21886521 21886522 - ORSgTEMT02400246 177 0.0017 (5/2967) 0 * * Os_TE_817040 Chr1 21878915 21878914 - TYPEM 227 0.0192 (52/2712) 0 * Os_TE_817039 Os_TE_817039 Chr1 21878914 21878915 - ORSgTEMT02400246 177 0.0226 (62/2748) 0 * Os_TE_817040 Os_TE_817038 Chr1 21878272 21878273 + RIREX_LTR 8828 0.0057 (17/2981) 0 * Os_TE_817037 Os_TE_817037 Chr1 21878268 21878267 - RIREX_LTR 8828 0.0057 (17/2980) 0 * Os_TE_817038 Os_TE_817034 Chr1 21875825 21875824 + SPMLIKE 10989 0.0003 (1/2997) 0 * * Os_TE_817033 Chr1 21875311 21875312 - ORSgTEMT02400161 221 0.0003 (1/2976) 0 * * Os_TE_817023 Chr1 21873990 21873989 + TRUNCATOR 2918 0.2223 (665/2991) 0 * Os_TE_817022 Os_TE_817022 Chr1 21873989 21873990 - TRUNCATOR 2918 0.2153 (641/2977) 0 * Os_TE_817023 Os_TE_816982 Chr1 21856478 21856477 + SPMLIKE 10989 0.0007 (1/1437) 0 * * Os_TE_816979 Chr1 21854911 21854670 + ORSgTEMT01601143 237 0.7619 (1309/1718) 1 Intact * Os_TE_816973 Chr1 21852637 21852638 - TRUNCATOR2_LTR 2904 0.0427 (62/1453) 0 * Os_TE_816972 Os_TE_816972 Chr1 21852633 21852632 + ORSiTERTOOT00028 8600 0.0347 (50/1442) 0 * Os_TE_816973 Os_TE_816964 Chr1 21847722 21847723 + COPIA2-LTR_OS 6433 0.0003 (1/2975) 0 * * Os_TE_816958 Chr1 21845066 21845065 + TRUNCATOR 2918 0.0005 (1/2175) 0 * * Os_TE_816952 Chr1 21843882 21843883 + COPIA2-LTR_OS 6433 0.0004 (1/2362) 0 * Os_TE_816951 Os_TE_816951 Chr1 21843878 21843877 - COPIA2-LTR_OS 6433 0.0004 (1/2369) 0 * Os_TE_816952 Os_TE_816908 Chr1 21821677 21821676 + ENSPM4_OS 11610 0.0038 (8/2095) 0 * * Os_TE_816902 Chr1 21820110 21820111 - ORSgTEMT01701953 146 0.0210 (44/2093) 0 * Os_TE_816901 Os_TE_816901 Chr1 21820106 21820105 - ORSgTEMT01701676 156 0.0204 (44/2153) 0 * Os_TE_816902 Os_TE_816900 Chr1 21820103 21820104 - ORSgTEMT01701366 170 0.0210 (44/2094) 0 * * Os_TE_816897 Chr1 21819806 21819805 + SZ-67LTR 1540 0.0017 (4/2300) 0 * * Os_TE_816891 Chr1 21816880 21816881 - RIRE2_LTR 11306 0.0066 (8/1209) 0 * Os_TE_816890 Os_TE_816890 Chr1 21816876 21816875 - ORSgTERT00201216 11284 0.0038 (8/2115) 0 * Os_TE_816891 Os_TE_816888 Chr1 21816457 21816456 - STOWAWAY12_OS 312 0.4424 (945/2136) 0 * Os_TE_816887 Os_TE_816887 Chr1 21816456 21816457 - ORSgTEMT02900061 318 0.4444 (947/2131) 0 * Os_TE_816888 Os_TE_816877 Chr1 21811589 21811590 + COPIA2-LTR_OS 6433 0.0003 (1/2972) 0 * Os_TE_816876 Os_TE_816876 Chr1 21811585 21811584 - COPIA2-LTR_OS 6433 0.0003 (1/2975) 0 * Os_TE_816877 Os_TE_816853 Chr1 21807112 21807113 + ORSgTEMT01701171 147 0.0004 (1/2790) 0 * * Os_TE_816787 Chr1 21781982 21761627 + CACTA-B 1103 0.3097 (922/2977) 1 Intact Os_TE_816773 Os_TE_816773 Chr1 21761628 21781979 - ORSgTETN00200001 10994 0.3091 (919/2973) 1 Intact Os_TE_816787 Os_TE_816763 Chr1 21757665 21757666 - ORSgTETN00200001 10994 0.0007 (2/2990) 0 * Os_TE_816762 Os_TE_816762 Chr1 21757663 21757662 + SPMLIKE 10989 0.0010 (3/2990) 0 * Os_TE_816763 Os_TE_816761 Chr1 21757454 21757455 - RIREX_LTR 8828 0.0117 (35/2991) 0 * Os_TE_816760 Os_TE_816760 Chr1 21757450 21757449 + RIREX_LTR 8828 0.0114 (34/2991) 0 * Os_TE_816761 Os_TE_816759 Chr1 21757041 21757042 + RIREX_LTR 8828 0.0003 (1/2994) 0 * Os_TE_816758 Os_TE_816758 Chr1 21757037 21757036 - RIREX_LTR 8828 0.0003 (1/2991) 0 * Os_TE_816759 Os_TE_816751 Chr1 21753895 21753896 + TRUNCATOR 2918 0.0030 (9/2996) 0 * * Os_TE_816743 Chr1 21752871 21752870 - RETROSAT2LTR 12796 0.3292 (986/2995) 0 * * Os_TE_816736 Chr1 21750683 21746917 + RETROSAT4_LTR 13504 0.3071 (914/2976) 1 Solo_LTR Os_TE_816731 Os_TE_816731 Chr1 21746917 21750683 - RETROSAT4_LTR 13504 0.3150 (944/2997) 1 Solo_LTR Os_TE_816736 Os_TE_816730 Chr1 21746634 21746635 - COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_816729 Os_TE_816729 Chr1 21746630 21746629 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_816730 Os_TE_816727 Chr1 21746285 21746286 - TRUNCATOR2_LTR 2904 0.0003 (1/2998) 0 * Os_TE_816726 Os_TE_816726 Chr1 21746281 21746280 + ORSiCMCM00100019 2717 0.0003 (1/2998) 0 * Os_TE_816727 Os_TE_816710 Chr1 21741564 21741563 - ORSgTEMT02400246 177 0.6845 (2020/2951) 0 * Os_TE_816709 Os_TE_816709 Chr1 21741560 21741561 + ORSgTEMT02400014 229 0.6815 (2001/2936) 0 * Os_TE_816710 Os_TE_816707 Chr1 21740267 21740266 - RETROSAT2LTRA 3112 0.0003 (1/2965) 0 * * Os_TE_816698 Chr1 21738829 21738828 - ORSgTEMT02400179 221 0.3001 (865/2882) 0 * Os_TE_816697 Os_TE_816697 Chr1 21738826 21738827 + ORSgTEMT02400034 225 0.3299 (983/2980) 0 * Os_TE_816698 Os_TE_816695 Chr1 21735356 21735357 - MuDR2_OS 6770 0.0120 (36/2998) 0 * Os_TE_816694 Os_TE_816694 Chr1 21735348 21735347 + MuDR3_OS 8604 0.0120 (36/2999) 0 * Os_TE_816695 Os_TE_816655 Chr1 21717060 21717061 - ECR 394 0.0021 (5/2362) 0 * * Os_TE_816615 Chr1 21697421 21697420 + ORSgTEMT01602051 240 0.6391 (1633/2555) 0 * * Os_TE_816613 Chr1 21697294 21697293 + ORSgTEMT01602119 229 0.6804 (1922/2825) 0 * * Os_TE_816608 Chr1 21696911 21697275 + ORSgTEMT01900028 316 0.3217 (937/2913) 1 Intact * Os_TE_816603 Chr1 21695889 21695888 - COPIA2-LTR_OS 6433 0.0017 (5/2973) 0 * * Os_TE_816593 Chr1 21694832 21694831 + ATLANTYS-LTR_OS 13740 0.6629 (1959/2955) 0 * * Os_TE_816591 Chr1 21694689 21694690 + F524 291 0.0018 (5/2785) 0 * * Os_TE_816589 Chr1 21693541 21693540 - STOWAWAY51_OS 246 0.0007 (2/2994) 0 * Os_TE_816588 Os_TE_816588 Chr1 21693538 21693539 - STOWAWAY51_OS 246 0.0007 (2/2990) 0 * Os_TE_816589 Os_TE_816579 Chr1 21692796 21692797 + STOWAWAY49_OS 241 0.6535 (1954/2990) 0 * * Os_TE_816576 Chr1 21691887 21691886 + OSTE20 496 0.0004 (1/2810) 0 * * Os_TE_816563 Chr1 21690021 21690022 - TYPEU1 380 0.6427 (1885/2933) 0 * Os_TE_816562 Os_TE_816562 Chr1 21690015 21690014 + TYPEU2 382 0.6499 (1929/2968) 0 * Os_TE_816563 Os_TE_816549 Chr1 21685018 21684756 - INDITTO 263 0.3186 (925/2903) 1 Intact Os_TE_816548 Os_TE_816548 Chr1 21684756 21685018 + INDITTO 263 0.3177 (924/2908) 1 Intact Os_TE_816549 Os_TE_816546 Chr1 21684355 21684356 - MERMITEA 1710 0.3221 (960/2980) 0 * Os_TE_816545 Os_TE_816545 Chr1 21684347 21684346 - MERMITEA 1710 0.3023 (882/2918) 0 * Os_TE_816546 Os_TE_816521 Chr1 21677982 21677777 - ORSgTEMT01400011 212 0.6901 (2015/2920) 1 Intact Os_TE_816518 Os_TE_816518 Chr1 21677743 21677980 + ORSgTEMT01400031 216 0.6960 (2038/2928) 1 Intact Os_TE_816521 Os_TE_816515 Chr1 21677703 21677704 + SPMLIKE 10989 0.0149 (44/2957) 0 * Os_TE_816514 Os_TE_816514 Chr1 21677701 21677700 - ORSgTETN00200001 10994 0.0093 (27/2899) 0 * Os_TE_816515 Os_TE_816509 Chr1 21673700 21674672 - CACTA-J 1159 0.5174 (1025/1981) 1 Intact * Os_TE_816508 Chr1 21673566 21673567 + ORSgTEMT01700820 150 0.4934 (931/1887) 0 * Os_TE_816507 Os_TE_816507 Chr1 21673563 21673562 + STOWAWAY1_OS 149 0.4855 (974/2006) 0 * Os_TE_816508 Os_TE_816506 Chr1 21673370 21673371 + ORSiTERTOOT00273 5419 0.0021 (5/2394) 0 * * Os_TE_816504 Chr1 21672973 21672974 - SZ-35LTR 3853 0.4468 (903/2021) 0 * Os_TE_816503 Os_TE_816503 Chr1 21672969 21672968 + RETROSAT4_LTR 13504 0.4385 (877/2000) 0 * Os_TE_816504 Os_TE_816501 Chr1 21672004 21672003 + CRMA1_LTR 7543 0.0025 (5/2034) 0 * * Os_TE_816498 Chr1 21669856 21669857 - GYPSY-B_LTR 7068 0.4800 (970/2021) 0 * Os_TE_816497 Os_TE_816497 Chr1 21669852 21669851 + GYPSY-B_LTR 7068 0.4751 (956/2012) 0 * Os_TE_816498 Os_TE_816490 Chr1 21665881 21665880 + COPI2_LTR 4733 0.0003 (1/2878) 0 * * Os_TE_816476 Chr1 21660990 21660991 - COPIA2-LTR_OS 6433 0.0005 (1/2074) 0 * Os_TE_816475 Os_TE_816475 Chr1 21660986 21660985 + COPIA2-LTR_OS 6433 0.0005 (1/2068) 0 * Os_TE_816476 Os_TE_816473 Chr1 21660828 21660827 + STOWAWAY45_OS 266 0.2474 (667/2696) 0 * * Os_TE_816468 Chr1 21659627 21659628 - RIREX_LTR 8828 0.0018 (5/2728) 0 * Os_TE_816467 Os_TE_816467 Chr1 21659623 21659622 + RIREX_LTR 8828 0.0017 (5/2996) 0 * Os_TE_816468 Os_TE_816462 Chr1 21657886 21657887 - OSLINE1-4 4779 0.0305 (91/2982) 0 * * Os_TE_816446 Chr1 21643392 21643393 - STOWAWAY51_OS 246 0.0005 (1/2077) 0 * * Os_TE_816444 Chr1 21641604 21641603 - ORSgTEMT01700507 154 0.0017 (5/2953) 0 * Os_TE_816443 Os_TE_816443 Chr1 21641601 21641602 + ORSgTEMT01701591 154 0.0017 (5/2964) 0 * Os_TE_816444 Os_TE_816436 Chr1 21636552 21636551 + OLO24B 335 0.0010 (2/2055) 0 * * Os_TE_816434 Chr1 21636387 21636165 - ORSgTEMT01400006 213 0.7328 (2051/2799) 1 Intact Os_TE_816430 Os_TE_816430 Chr1 21636133 21636372 + ORSgTEMT01400031 216 0.7125 (1993/2797) 1 Intact Os_TE_816434 Os_TE_816427 Chr1 21636066 21636065 - DITTO 244 0.0024 (5/2053) 0 * * Os_TE_816426 Chr1 21635946 21635734 - ORSgTEMT01400015 213 0.7520 (2001/2661) 1 Intact * Os_TE_816423 Chr1 21634921 21634922 - COPI2_LTR 4733 0.0023 (7/2983) 0 * Os_TE_816422 Os_TE_816422 Chr1 21634917 21634916 + COPI2_LTR 4733 0.0054 (16/2986) 0 * Os_TE_816423 Os_TE_816417 Chr1 21629665 21629666 - CLOUD-6 508 0.5602 (1671/2983) 0 * Os_TE_816416 Os_TE_816416 Chr1 21629657 21629656 + CLOUD-4 520 0.5615 (1679/2990) 0 * Os_TE_816417 Os_TE_816415 Chr1 21628014 21628015 + MERMITE18B 1306 0.0491 (135/2748) 0 * * Os_TE_816411 Chr1 21624757 21624756 + STOWAWAY41_OS 264 0.0736 (99/1345) 0 * * Os_TE_816260 Chr1 21564882 21564883 + MPING 430 0.0136 (12/880) 0 * Os_TE_816259 Os_TE_816259 Chr1 21564880 21564879 - MPING 430 0.0147 (13/885) 0 * Os_TE_816260 Os_TE_816241 Chr1 21556810 21556811 - COPIA2-LTR_OS 6433 0.0283 (27/954) 0 * Os_TE_816240 Os_TE_816240 Chr1 21556806 21556805 + COPIA2-LTR_OS 6433 0.0273 (26/953) 0 * Os_TE_816241 Os_TE_816172 Chr1 21525740 21525601 - ORSgTEMT00501447 126 0.5429 (950/1750) 1 Intact Os_TE_816170 Os_TE_816170 Chr1 21525598 21525737 + ORSgTEMT00500201 140 0.3927 (942/2399) 1 Intact Os_TE_816172 Os_TE_816131 Chr1 21504487 21504238 - ORSgTEMT00900099 250 0.4362 (944/2164) 1 Intact * Os_TE_816108 Chr1 21500132 21499743 - ORSgTEMT00300047 376 0.4133 (906/2192) 1 Intact * Os_TE_816059 Chr1 21482218 21450120 - RIRE2_LTR 11306 0.8397 (901/1073) 1 Intact * Os_TE_816046 Chr1 21479104 21475861 - RIRE3A_LTR 10580 0.4554 (934/2051) 1 Solo_LTR * Os_TE_816007 Chr1 21446679 21446680 - NDNA1TNA_OS 334 0.0011 (1/951) 0 * * Os_TE_815990 Chr1 21442353 21442872 - SZ-16LTR 728 0.8702 (912/1048) 1 Intact * Os_TE_815976 Chr1 21436218 21436219 - ORMOSIA 482 0.6446 (1614/2504) 0 * * Os_TE_815970 Chr1 21432043 21432265 + STOWAWAY34_OS 256 0.3655 (925/2531) 1 Intact * Os_TE_815968 Chr1 21431387 21431388 - ORSgTEMT01601770 238 0.6123 (1390/2270) 0 * * Os_TE_815966 Chr1 21430691 21430460 - STOWAWAY43_OS 233 0.8820 (934/1059) 1 Intact * Os_TE_815951 Chr1 21425060 21425059 + ORSgTETNOOT00908 242 0.5996 (1391/2320) 0 * * Os_TE_815925 Chr1 21414714 21414713 + ENSPM_OS 9843 0.6485 (1670/2575) 0 * * Os_TE_815924 Chr1 21413607 21412422 + OSTE15 1168 0.3581 (912/2547) 1 Intact * Os_TE_815923 Chr1 21412379 21412378 + COPIA1-LTR_OS 9292 0.5497 (1140/2074) 0 * * Os_TE_815922 Chr1 21411914 21411915 + YOUREN 286 0.6134 (1460/2380) 0 * * Os_TE_815911 Chr1 21409572 21410278 + ORSiTERTOOT00117 733 0.4752 (918/1932) 1 Intact * Os_TE_815908 Chr1 21407366 21408752 - EnSpm-N2_OS 1282 0.5720 (938/1640) 1 Intact * Os_TE_815907 Chr1 21407324 21407323 + TREP220 109 0.5389 (1067/1980) 0 * * Os_TE_815901 Chr1 21406194 21406193 - SZ-9LTR 965 0.6414 (1601/2496) 0 * * Os_TE_815897 Chr1 21405269 21403078 + SEVERIN-2 1952 0.6003 (835/1391) 1 Intact * Os_TE_815876 Chr1 21397013 21397012 - SZ-46LTR 3360 0.2464 (307/1246) 0 * * Os_TE_815864 Chr1 21390781 21390628 + F1275 157 0.3931 (939/2389) 1 Intact * Os_TE_815862 Chr1 21390557 21390556 + STOWAWAY44_OS 240 0.6641 (1807/2721) 0 * * Os_TE_815835 Chr1 21381808 21381807 + TRUNCATOR 2918 0.0005 (1/1836) -1 * * Os_TE_815826 Chr1 21380779 21380780 + INDITTO 263 0.0044 (12/2752) 0 * Os_TE_815825 Os_TE_815825 Chr1 21380777 21380776 + ORSgTETNOOT00221 261 0.0040 (11/2749) 0 * Os_TE_815826 Os_TE_815797 Chr1 21361994 21361993 - ORSgTEMT00901469 250 0.0341 (102/2988) 0 * * Os_TE_815790 Chr1 21359589 21359590 - RETROSAT4_LTR 13504 0.0040 (12/2989) 0 * Os_TE_815789 Os_TE_815789 Chr1 21359585 21359584 + RETROSAT4_LTR 13504 0.0037 (11/2988) 0 * Os_TE_815790 Os_TE_815767 Chr1 21347652 21347653 - MERMITED 1572 0.0024 (7/2968) 0 * Os_TE_815766 Os_TE_815766 Chr1 21347650 21347649 - MERMITED 1572 0.0024 (7/2954) 0 * Os_TE_815767 Os_TE_815760 Chr1 21346938 21346937 - MPING 430 0.0004 (1/2838) 0 * * Os_TE_815758 Chr1 21345846 21345845 + SNAP-OL3 189 0.0078 (23/2943) 0 * * Os_TE_815744 Chr1 21343080 21343079 + COPIA2-LTR_OS 6433 0.0017 (5/2969) 0 * * Os_TE_815740 Chr1 21341833 21341834 + SC-1_LTR 6888 0.0041 (12/2944) 0 * * Os_TE_815737 Chr1 21341380 21337651 - ORSgTEMT00100315 323 0.3977 (982/2469) 1 Intact * Os_TE_815717 Chr1 21334094 21334277 - ORSgTEMT06000205 191 0.7165 (1375/1919) 1 Intact * Os_TE_815702 Chr1 21311118 21311119 + MERMITE18B 1306 0.0328 (31/945) 0 * Os_TE_815701 Os_TE_815701 Chr1 21311110 21311109 + MERMITE18B 1306 0.0369 (35/948) 0 * Os_TE_815702 Os_TE_815700 Chr1 21311049 21311050 + ORSgTEMT00100291 345 0.0011 (1/949) 0 * * Os_TE_815698 Chr1 21310807 21309638 + MUDRN5_OS 374 0.8073 (813/1007) 1 Intact * Os_TE_815656 Chr1 21282485 21282486 - RIRE2_LTR 11306 0.0286 (84/2940) 0 * * Os_TE_815653 Chr1 21282082 21282081 - SZ-5LTR 1223 0.7017 (2054/2927) 0 * * Os_TE_815652 Chr1 21281947 21281948 - CLOUD 734 0.0118 (35/2977) 0 * Os_TE_815651 Os_TE_815651 Chr1 21281939 21281938 - CLOUD 734 0.0111 (33/2980) 0 * Os_TE_815652 Os_TE_815650 Chr1 21281771 21281772 + DS-RICE4N 715 0.0007 (2/2979) 0 * * Os_TE_815646 Chr1 21278893 21278894 + ORSgTEMT01701591 154 0.0681 (202/2965) 0 * Os_TE_815645 Os_TE_815645 Chr1 21278891 21278890 + STOWAWAY1_OS 149 0.0789 (236/2990) 0 * Os_TE_815646 Os_TE_815614 Chr1 21267977 21267976 - SC-3_LTR 5748 0.0003 (1/2963) 0 * * Os_TE_815611 Chr1 21265472 21265473 + STOWAWAY1_OS 149 0.0649 (194/2987) 0 * * Os_TE_815582 Chr1 21262759 21262760 + ORSgTETNOOT00032 218 0.6247 (1829/2928) -1 * * Os_TE_815581 Chr1 21262412 21262413 - TELIA 141 0.0003 (1/2979) 0 * Os_TE_815580 Os_TE_815580 Chr1 21262408 21262407 + TELIA 141 0.0004 (1/2796) 0 * Os_TE_815581 Os_TE_815577 Chr1 21261507 21261508 - ORSgTETNOOT00477 252 0.0007 (2/2971) 0 * Os_TE_815576 Os_TE_815576 Chr1 21261502 21261501 - ORSgTETNOOT00754 253 0.0007 (2/2967) 0 * Os_TE_815577 Os_TE_815568 Chr1 21260866 21260865 - ORSiTERTOOT00429 6748 0.0003 (1/2889) 0 * * Os_TE_815562 Chr1 21260367 21260368 - STOWAWAY17_OS 259 0.0691 (203/2936) 0 * * Os_TE_815560 Chr1 21258999 21259000 + AMYLTP 383 0.0700 (205/2927) 0 * * Os_TE_815518 Chr1 21239161 21239162 - OLO24 345 0.0004 (1/2793) 0 * Os_TE_815517 Os_TE_815517 Chr1 21239159 21239158 + OLO24 345 0.0003 (1/2990) 0 * Os_TE_815518 Os_TE_815514 Chr1 21238433 21238192 - ORSgTETNOOT00908 242 0.2958 (882/2982) 1 Intact Os_TE_815513 Os_TE_815513 Chr1 21238192 21238433 + ORSgTETNOOT00908 242 0.2943 (877/2980) 1 Intact Os_TE_815514 Os_TE_815511 Chr1 21237861 21237862 + TYPEU4 402 0.0688 (205/2981) 0 * Os_TE_815510 Os_TE_815510 Chr1 21237853 21237852 - TYPEU1 380 0.0401 (117/2916) 0 * Os_TE_815511 Os_TE_815506 Chr1 21236893 21236892 + DS-RICE4N 715 0.0010 (3/2965) 0 * * Os_TE_815501 Chr1 21235215 21236389 - RETRO2_LTR 12874 0.3195 (890/2786) 1 Solo_LTR * Os_TE_815499 Chr1 21233264 21233265 + SC-8_LTR 4951 0.0003 (1/2994) 0 * Os_TE_815498 Os_TE_815498 Chr1 21233260 21233259 - SC-8_LTR 4951 0.0003 (1/2996) 0 * Os_TE_815499 Os_TE_815496 Chr1 21230203 21230204 + SETARIA2 1142 0.0687 (199/2895) 0 * * Os_TE_815489 Chr1 21225313 21224705 - JOUZHENA 607 0.3289 (965/2934) 1 Intact Os_TE_815487 Os_TE_815487 Chr1 21224705 21225313 + JOUZHENA 607 0.3403 (1013/2977) 1 Intact Os_TE_815489 Os_TE_815482 Chr1 21223306 21204472 + OSTONOR1_LTR 6440 0.3444 (1021/2965) 1 Intact * Os_TE_815456 Chr1 21194129 21194128 + ORSiTERTOOT00296 5553 0.0339 (100/2947) 0 * * Os_TE_815453 Chr1 21192476 21192475 + TRUNCATOR2_LTR 2904 0.0003 (1/2983) 0 * * Os_TE_815450 Chr1 21192348 21192347 - CACTA-H 1152 0.6190 (1800/2908) 0 * * Os_TE_815449 Chr1 21192033 21192034 - SZ-62LTR 3649 0.0120 (36/2993) 0 * Os_TE_815448 Os_TE_815448 Chr1 21192029 21192028 + SZ-62LTR 3649 0.0124 (37/2992) 0 * Os_TE_815449 Os_TE_815447 Chr1 21191420 21191421 - TYPEU1 380 0.0120 (36/2991) 0 * Os_TE_815446 Os_TE_815446 Chr1 21191412 21191411 + TYPEU4 402 0.0120 (36/2991) 0 * Os_TE_815447 Os_TE_815439 Chr1 21188362 21188119 + ORSgTETNOOT01668 244 0.8474 (2483/2930) 1 Intact * Os_TE_815420 Chr1 21181347 21181346 - ORSgTEMT02400179 221 0.1240 (371/2991) 0 * * Os_TE_815388 Chr1 21157341 21157340 + RETRO2_LTR 12874 0.0017 (5/2998) 0 * * Os_TE_815381 Chr1 21151912 21151911 + ORSgTETNOOT00012 241 0.0003 (1/2989) 0 * * Os_TE_815379 Chr1 21151201 21151200 + MUDRN5_OS 374 0.0007 (2/2969) 0 * * Os_TE_815361 Chr1 21146444 21146443 + TWIF 586 0.0004 (1/2727) 0 * * Os_TE_815356 Chr1 21143347 21143348 - TYPEM 227 0.0033 (10/2994) 0 * * Os_TE_815317 Chr1 21117170 21117171 + RETROSAT2LTR 12796 0.0010 (3/2996) 0 * Os_TE_815316 Os_TE_815316 Chr1 21117168 21117167 - RETROSAT2LTR 12796 0.0013 (4/2999) 0 * Os_TE_815317 Os_TE_815308 Chr1 21114669 21114668 + OLO24 345 0.0585 (173/2955) 0 * * Os_TE_815281 Chr1 21108835 21108834 - ORSgTEMT02400179 221 0.0003 (1/2992) 0 * * Os_TE_815259 Chr1 21102248 21102249 + COPIA2-LTR_OS 6433 0.0003 (1/2954) 0 * Os_TE_815258 Os_TE_815258 Chr1 21102244 21102243 - COPIA2-LTR_OS 6433 0.0003 (1/2961) 0 * Os_TE_815259 Os_TE_815257 Chr1 21102150 21102149 - ORSiTERT00200134 431 0.0007 (2/2914) 0 * * Os_TE_815247 Chr1 21098774 21091556 - RIREX_LTR 8828 0.8284 (2467/2978) 1 Intact Os_TE_815246 Os_TE_815246 Chr1 21091556 21098774 + RIREX_LTR 8828 0.8326 (2492/2993) 1 Intact Os_TE_815247 Os_TE_815236 Chr1 21081764 21081763 + OSMU5 4881 0.0007 (2/2940) 0 * * Os_TE_815213 Chr1 21069371 21069372 + HATOS1 3488 0.0017 (5/2914) 0 * Os_TE_815212 Os_TE_815212 Chr1 21069364 21069363 - HATOS1 3488 0.0024 (7/2914) 0 * Os_TE_815213 Os_TE_815194 Chr1 21065056 21065057 + RETRO2A_LTR 12895 0.0003 (1/2909) 0 * Os_TE_815193 Os_TE_815193 Chr1 21065052 21065051 - RETRO1_LTR 8314 0.0003 (1/2908) 0 * Os_TE_815194 Os_TE_815158 Chr1 21046910 21046909 + TNR2A 152 0.0034 (10/2933) 0 * * Os_TE_815157 Chr1 21046360 21046361 - OSCOPIA2_LTR 5476 0.0004 (1/2828) 0 * * Os_TE_815149 Chr1 21042558 21042559 - Cassandra_OS-LTR 764 0.0021 (6/2853) 0 * Os_TE_815148 Os_TE_815148 Chr1 21042554 21042553 + RETROSAT4_LTR 13504 0.0021 (6/2856) 0 * Os_TE_815149 Os_TE_815141 Chr1 21036985 21036984 - RETRO2_LTR 12874 0.0078 (23/2943) 0 * * Os_TE_815138 Chr1 21036648 21036649 - COPI2_LTR 4733 0.0007 (2/2987) 0 * Os_TE_815137 Os_TE_815137 Chr1 21036644 21036643 + COPI2_LTR 4733 0.0007 (2/2979) 0 * Os_TE_815138 Os_TE_815119 Chr1 21033065 21033066 + MUDRN1_OS 764 0.1139 (312/2739) 0 * * Os_TE_815077 Chr1 21010701 21010702 - TRUNCATOR2_LTR 2904 0.0204 (61/2993) 0 * Os_TE_815076 Os_TE_815076 Chr1 21010697 21010696 + ORSiCMCM00100019 2717 0.0207 (62/2992) 0 * Os_TE_815077 Os_TE_815071 Chr1 21009037 21009038 + ORSiCMCM00100019 2717 0.0003 (1/2992) 0 * * Os_TE_815068 Chr1 21008556 20998351 + ORSiTERTOOT00027 10853 0.7646 (2248/2940) 1 Intact Os_TE_815064 Os_TE_815064 Chr1 20998351 21008556 - RIRE3A_LTR 10580 0.7723 (2296/2973) 1 Intact Os_TE_815068 Os_TE_815056 Chr1 20996134 20996135 + F569 228 0.0003 (1/2959) 0 * Os_TE_815055 Os_TE_815055 Chr1 20996132 20996131 - F569 228 0.0003 (1/2960) 0 * Os_TE_815056 Os_TE_815050 Chr1 20993917 20993916 + ORSgTEMT01601934 207 0.0216 (62/2872) 0 * * Os_TE_815004 Chr1 20960290 20960045 - ORSgTEMT01602413 239 0.8946 (2674/2989) 1 Intact * Os_TE_814955 Chr1 20940882 20940881 + ORSgTEMT01600227 232 0.0003 (1/2996) 0 * * Os_TE_814948 Chr1 20935639 20935638 + STOWAWAY51_OS 246 0.0010 (3/2995) 0 * * Os_TE_814916 Chr1 20924613 20924614 + COPIA2-LTR_OS 6433 0.0141 (42/2988) 0 * Os_TE_814915 Os_TE_814915 Chr1 20924609 20924608 - COPIA2-LTR_OS 6433 0.0147 (44/2993) 0 * Os_TE_814916 Os_TE_814878 Chr1 20912038 20912037 - TYPEM 227 0.2132 (634/2974) 0 * * Os_TE_814873 Chr1 20910350 20910351 - MPING 430 0.0003 (1/2988) 0 * Os_TE_814872 Os_TE_814872 Chr1 20910348 20910347 + MPING 430 0.0003 (1/2916) 0 * Os_TE_814873 Os_TE_814840 Chr1 20889613 20889477 + ORSgTEMT01701983 154 0.8914 (2282/2560) -1 Intact * Os_TE_814830 Chr1 20887347 20877060 + RIRE5-LTR_OS 6427 0.7005 (1871/2671) 1 Intact * Os_TE_814752 Chr1 20834801 20834802 - INDITTO 263 0.0005 (1/2197) 0 * Os_TE_814751 Os_TE_814751 Chr1 20834799 20834798 + INDITTO 263 0.0005 (1/2189) 0 * Os_TE_814752 Os_TE_814719 Chr1 20818575 20818576 - SC-8_LTR 4951 0.0022 (5/2226) 0 * Os_TE_814718 Os_TE_814718 Chr1 20818571 20818570 + SC-8_LTR 4951 0.0022 (5/2226) 0 * Os_TE_814719 Os_TE_814630 Chr1 20752599 20752598 - ORSgTEMT01601432 239 0.0306 (68/2220) 0 * Os_TE_814629 Os_TE_814629 Chr1 20752596 20752597 + ORSgTEMT01602181 239 0.0341 (76/2230) 0 * Os_TE_814630 Os_TE_814628 Chr1 20750895 20750896 - RIREX_LTR 8828 0.0004 (1/2287) 0 * Os_TE_814627 Os_TE_814627 Chr1 20750891 20750890 + RIREX_LTR 8828 0.0004 (1/2287) 0 * Os_TE_814628 Os_TE_814613 Chr1 20739584 20739241 - ORSgTEMT00100312 345 0.7956 (2382/2994) 1 Intact * Os_TE_814587 Chr1 20730680 20730306 - BUHUI 375 0.8646 (2382/2755) 1 Intact Os_TE_814584 Os_TE_814584 Chr1 20730304 20730679 + BUHUI 375 0.7941 (2249/2832) 1 Intact Os_TE_814587 Os_TE_814583 Chr1 20730231 20730232 - MERMITED 1572 0.2170 (619/2852) 0 * Os_TE_814582 Os_TE_814582 Chr1 20730229 20730228 - MERMITED 1572 0.2082 (587/2819) 0 * Os_TE_814583 Os_TE_814575 Chr1 20721017 20721018 - NDNA1TNA_OS 334 0.0013 (4/2967) 0 * Os_TE_814574 Os_TE_814574 Chr1 20721015 20721014 + NDNA1TNA_OS 334 0.0013 (4/2972) 0 * Os_TE_814575 Os_TE_814571 Chr1 20716562 20716561 + ORSgTEMT00100428 339 0.2113 (632/2991) 0 * Os_TE_814570 Os_TE_814570 Chr1 20716561 20716562 + NDNA1TNA_OS 334 0.2141 (641/2994) 0 * Os_TE_814571 Os_TE_814554 Chr1 20708297 20708298 + ORSiTERTOOT00226 792 0.0003 (1/2998) 0 * * Os_TE_814546 Chr1 20704756 20704757 - MPING 430 0.0014 (4/2863) 0 * Os_TE_814545 Os_TE_814545 Chr1 20704754 20704753 + MPING 430 0.0014 (4/2857) 0 * Os_TE_814546 Os_TE_814534 Chr1 20698853 20698854 + HATOS1 3488 0.0024 (7/2947) 0 * Os_TE_814533 Os_TE_814533 Chr1 20698846 20698845 - HATOS1 3488 0.0024 (7/2959) 0 * Os_TE_814534 Os_TE_814528 Chr1 20697405 20671928 - RETRO2_LTR 12874 0.6764 (2021/2988) 1 Intact Os_TE_814511 Os_TE_814511 Chr1 20671928 20697405 + RETRO2_LTR 12874 0.6758 (2012/2977) 1 Intact Os_TE_814528 Os_TE_814510 Chr1 20671495 20671496 + COPI2_LTR 4733 0.0003 (1/2991) 0 * Os_TE_814509 Os_TE_814509 Chr1 20671491 20671490 - COPI2_LTR 4733 0.0003 (1/2991) 0 * Os_TE_814510 Os_TE_814494 Chr1 20665321 20665320 + ORSgTEMT01601934 207 0.0010 (3/2992) 0 * * Os_TE_814491 Chr1 20662004 20662005 + AMYLTP 383 0.0013 (4/2973) 0 * * Os_TE_814485 Chr1 20660170 20660171 - MPING 430 0.0003 (1/2982) 0 * Os_TE_814484 Os_TE_814484 Chr1 20660168 20660167 + MPING 430 0.0003 (1/2981) 0 * Os_TE_814485 Os_TE_814482 Chr1 20659827 20659828 + TWIF 586 0.0003 (1/2914) 0 * Os_TE_814481 Os_TE_814481 Chr1 20659820 20659819 - ORSiTETNOOT00134 607 0.0003 (1/2912) 0 * Os_TE_814482 Os_TE_814463 Chr1 20655881 20655880 + SPMLIKE 10989 0.0013 (4/2998) 0 * * Os_TE_814461 Chr1 20655633 20655632 - HARB-1_OS 5166 0.1546 (461/2981) 0 * * Os_TE_814445 Chr1 20652666 20652665 - COPI2_LTR 4733 0.0003 (1/2995) 0 * * Os_TE_814420 Chr1 20645760 20645759 - ORSgTEMT01701882 154 0.1715 (511/2980) 0 * * Os_TE_814407 Chr1 20638807 20638808 + COPIA2-LTR_OS 6433 0.0372 (111/2980) 0 * Os_TE_814406 Os_TE_814406 Chr1 20638803 20638802 - COPIA2-LTR_OS 6433 0.0398 (119/2988) 0 * Os_TE_814407 Os_TE_814389 Chr1 20634284 20634283 - COPIA2-LTR_OS 6433 0.0003 (1/2981) 0 * * Os_TE_814381 Chr1 20632018 20632017 + ORSgTETNOOT00908 242 0.0314 (94/2990) 0 * * Os_TE_814377 Chr1 20629905 20629906 + COPI2_LTR 4733 0.0010 (3/2990) 0 * Os_TE_814376 Os_TE_814376 Chr1 20629901 20629900 - COPI2_LTR 4733 0.0010 (3/2991) 0 * Os_TE_814377 Os_TE_814373 Chr1 20628101 20628100 + TWIFBIG 3567 0.0063 (19/2994) 0 * * Os_TE_814372 Chr1 20627595 20627594 + ORSgTETNOOT00908 242 0.0003 (1/2987) 0 * * Os_TE_814363 Chr1 20625963 20625964 - COPIA2-LTR_OS 6433 0.0003 (1/2914) 0 * Os_TE_814362 Os_TE_814362 Chr1 20625959 20625958 + COPIA2-LTR_OS 6433 0.0003 (1/2917) 0 * Os_TE_814363 Os_TE_814334 Chr1 20617757 20617756 - FOCUS 257 0.0003 (1/2982) 0 * * Os_TE_814333 Chr1 20617723 20611258 + COPIA2-LTR_OS 6433 0.0177 (53/2986) 1 Intact Os_TE_814332 Os_TE_814332 Chr1 20611258 20617723 - COPIA2-LTR_OS 6433 0.0174 (52/2992) 1 Intact Os_TE_814333 Os_TE_814319 Chr1 20609043 20609042 - TEMPINDAS 4259 0.0168 (48/2851) 0 * * Os_TE_814312 Chr1 20605723 20605724 + COPIA2-LTR_OS 6433 0.0003 (1/2946) 0 * Os_TE_814311 Os_TE_814311 Chr1 20605719 20605718 - COPIA2-LTR_OS 6433 0.0003 (1/2953) 0 * Os_TE_814312 Os_TE_814287 Chr1 20597150 20597149 + ORSgTEMT01601122 212 0.0011 (3/2673) 0 * * Os_TE_814276 Chr1 20593125 20593126 + CRM-LTR_OS 7749 0.0007 (2/2975) 0 * Os_TE_814275 Os_TE_814275 Chr1 20593121 20593120 - CRM-LTR_OS 7749 0.0007 (2/2979) 0 * Os_TE_814276 Os_TE_814271 Chr1 20590908 20590909 - ORSiTERT00200154 9386 0.0037 (11/2995) 0 * Os_TE_814270 Os_TE_814270 Chr1 20590902 20590901 + TRUNCATOR 2918 0.0040 (12/2995) 0 * Os_TE_814271 Os_TE_814226 Chr1 20562371 20562372 - OSTONOR1_LTR 6440 0.0003 (1/2993) 0 * * Os_TE_814123 Chr1 20522702 20522703 + JOUZHENA 607 0.0005 (1/2154) 0 * * Os_TE_814120 Chr1 20521874 20521875 + RETRO2_LTR 12874 0.0247 (73/2952) 0 * Os_TE_814119 Os_TE_814119 Chr1 20521870 20521869 - RETRO2_LTR 12874 0.0231 (68/2947) 0 * Os_TE_814120 Os_TE_814113 Chr1 20516800 20514003 + TRUNCATOR 2918 0.7036 (2079/2955) 1 Intact * Os_TE_814095 Chr1 20509472 20509473 - RETROSAT2LTR 12796 0.0134 (40/2979) 0 * Os_TE_814094 Os_TE_814094 Chr1 20509470 20509469 + RETROSAT2LTR 12796 0.0127 (38/2995) 0 * Os_TE_814095 Os_TE_814063 Chr1 20502889 20502888 - COPIA2-LTR_OS 6433 0.0003 (1/2973) 0 * * Os_TE_814061 Chr1 20502098 20502099 - RIREX_LTR 8828 0.0007 (2/2951) 0 * Os_TE_814060 Os_TE_814060 Chr1 20502094 20502093 + RIREX_LTR 8828 0.0007 (2/2951) 0 * Os_TE_814061 Os_TE_813968 Chr1 20457843 20457844 - ORSgTETN00200001 10994 0.1168 (346/2963) 0 * Os_TE_813967 Os_TE_813967 Chr1 20457841 20457840 + SPMLIKE 10989 0.1167 (346/2965) 0 * Os_TE_813968 Os_TE_813965 Chr1 20456092 20456093 + ORSgTETNOOT00908 242 0.0084 (25/2990) 0 * Os_TE_813964 Os_TE_813964 Chr1 20456084 20456083 + ORSgTETNOOT01219 231 0.0080 (24/2990) 0 * Os_TE_813965 Os_TE_813962 Chr1 20454745 20454746 - ORSgTETN00200001 10994 0.0003 (1/2960) 0 * * Os_TE_813954 Chr1 20452667 20452666 + ORSgTEMT00300064 397 0.0483 (144/2981) 0 * * Os_TE_813944 Chr1 20452065 20452064 - AMYLTP 383 0.7164 (394/550) -1 * * Os_TE_813879 Chr1 20423021 20423020 + SPMLIKE 10989 0.0023 (7/2986) 0 * * Os_TE_813840 Chr1 20406590 20406591 - ORSgTETN00200001 10994 0.0007 (2/2968) 0 * * Os_TE_813801 Chr1 20387109 20387108 + INDITTO 263 0.0003 (1/2926) 0 * * Os_TE_813773 Chr1 20371606 20365152 - COPIA2-LTR_OS 6433 0.0194 (58/2990) 1 Intact Os_TE_813772 Os_TE_813772 Chr1 20365152 20371606 + COPIA2-LTR_OS 6433 0.0194 (58/2987) 1 Intact Os_TE_813773 Os_TE_813759 Chr1 20357354 20357355 - SC-3_LTR 5748 0.0007 (2/2970) 0 * Os_TE_813758 Os_TE_813758 Chr1 20357350 20357349 + ORSiTERTOOT00296 5553 0.0007 (2/2974) 0 * Os_TE_813759 Os_TE_813753 Chr1 20352804 20352805 - SC-3_LTR 5748 0.0003 (1/2994) 0 * Os_TE_813752 Os_TE_813752 Chr1 20352800 20352799 + ORSiTERTOOT00296 5553 0.0003 (1/2994) 0 * Os_TE_813753 Os_TE_813739 Chr1 20344643 20344644 + INDITTO 263 0.0051 (15/2920) 0 * Os_TE_813738 Os_TE_813738 Chr1 20344641 20344640 - INDITTO 263 0.0055 (16/2920) 0 * Os_TE_813739 Os_TE_813727 Chr1 20337434 20337435 - MPING 430 0.0013 (4/2996) 0 * Os_TE_813726 Os_TE_813726 Chr1 20337432 20337431 + MPING 430 0.0013 (4/2996) 0 * Os_TE_813727 Os_TE_813720 Chr1 20333088 20333089 - ORSgTEMT00200185 144 0.0017 (5/2966) 0 * Os_TE_813719 Os_TE_813719 Chr1 20333084 20333083 - ORSgTEMT01701254 154 0.0017 (5/2967) 0 * Os_TE_813720 Os_TE_813718 Chr1 20333081 20333082 - ORSgTEMT01700299 212 0.0017 (5/2969) 0 * * Os_TE_813704 Chr1 20327171 20327172 + RETRO2_LTR 12874 0.0013 (4/2994) 0 * Os_TE_813703 Os_TE_813703 Chr1 20327167 20327166 - RETRO2_LTR 12874 0.0013 (4/2996) 0 * Os_TE_813704 Os_TE_813701 Chr1 20326547 20326546 - ORSgTEMT00900075 250 0.0017 (5/2991) 0 * * Os_TE_813699 Chr1 20325411 20325412 - SUSU 279 0.0017 (5/2990) 0 * Os_TE_813698 Os_TE_813698 Chr1 20325409 20325408 + ORSgTEMT05000092 279 0.0013 (4/2989) 0 * Os_TE_813699 Os_TE_813689 Chr1 20319455 20319456 - ORSgTEMT05200003 285 0.0017 (5/2980) 0 * Os_TE_813688 Os_TE_813688 Chr1 20319453 20319452 - YOUREN 286 0.0017 (5/2973) 0 * Os_TE_813689 Os_TE_813679 Chr1 20317304 20317303 - STOWAWAY51_OS 246 0.0023 (7/2997) 0 * Os_TE_813678 Os_TE_813678 Chr1 20317298 20317299 + STOWAWAY51_OS 246 0.0023 (7/2995) 0 * Os_TE_813679 Os_TE_813633 Chr1 20292019 20292020 + NDNA1TNA_OS 334 0.0094 (28/2990) 0 * * Os_TE_813630 Chr1 20291404 20291405 - COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * * Os_TE_813625 Chr1 20284023 20284024 + ORSiTERTOOT00226 792 0.0003 (1/2989) 0 * * Os_TE_813621 Chr1 20280858 20280859 - RMU1A23 4144 0.0019 (3/1603) 0 * * Os_TE_813565 Chr1 20269256 20269255 + STOWAWAY43_OS 233 0.1641 (487/2968) 0 * * Os_TE_813533 Chr1 20251991 20251990 - TYPEM 227 0.1695 (506/2986) 0 * Os_TE_813532 Os_TE_813532 Chr1 20251990 20251991 - ORSgTEMT02400148 214 0.1747 (523/2993) 0 * Os_TE_813533 Os_TE_813480 Chr1 20232047 20231841 - ORSgTEMT01400022 212 0.8431 (2515/2983) 1 Intact Os_TE_813476 Os_TE_813476 Chr1 20231806 20232044 + ORSgTEMT01400012 212 0.8379 (2471/2949) 1 Intact Os_TE_813480 Os_TE_813470 Chr1 20231320 20219981 - SZ-7A_LTR 11400 0.8839 (2498/2826) 1 Intact * Os_TE_813433 Chr1 20218875 20218876 - RIREX_LTR 8828 0.0105 (31/2958) 0 * Os_TE_813432 Os_TE_813432 Chr1 20218871 20218870 + RIREX_LTR 8828 0.0116 (29/2501) 0 * Os_TE_813433 Os_TE_813404 Chr1 20203893 20203892 + SPMLIKE 10989 0.0025 (7/2856) 0 * * Os_TE_813378 Chr1 20191714 20191715 + MERMITE18B 1306 0.1682 (500/2972) 0 * Os_TE_813377 Os_TE_813377 Chr1 20191708 20191707 + MERMITEB 1610 0.1625 (481/2960) 0 * Os_TE_813378 Os_TE_813375 Chr1 20190344 20183829 + RIREX_LTR 8828 0.8520 (2521/2959) 1 Intact Os_TE_813356 Os_TE_813356 Chr1 20183829 20190343 - RIREX_LTR 8828 0.8718 (2509/2878) 1 Intact Os_TE_813375 Os_TE_813334 Chr1 20176114 20176113 - RIRE3A_LTR 10580 0.0004 (1/2531) 0 * * Os_TE_813311 Chr1 20157684 20157683 - TRUNCATOR 2918 0.0007 (2/2945) 0 * Os_TE_813310 Os_TE_813310 Chr1 20157683 20157684 + TRUNCATOR 2918 0.0007 (2/2936) 0 * Os_TE_813311 Os_TE_813309 Chr1 20157622 20157621 + OLO24C 356 0.1437 (425/2958) 0 * * Os_TE_813306 Chr1 20156266 20156265 + TAMI2 254 0.0241 (63/2611) 0 * * Os_TE_813228 Chr1 20132336 20132078 - ORSgTETNOOT01607 258 0.8485 (2493/2938) 0.89 Intact * Os_TE_813225 Chr1 20131686 20130831 + CACTA-F 1118 0.8473 (2447/2888) 1 Intact Os_TE_813223 Os_TE_813223 Chr1 20130831 20131686 - CACTA-F 1118 0.8461 (2463/2911) 1 Intact Os_TE_813225 Os_TE_813210 Chr1 20129839 20129395 - RIREX_LTR 8828 0.8525 (2515/2950) 1 Solo_LTR Os_TE_813207 Os_TE_813207 Chr1 20129397 20129837 + RIREX_LTR 8828 0.8395 (2485/2960) 1 Solo_LTR Os_TE_813210 Os_TE_813202 Chr1 20127047 20127861 - MERMITE18A 532 0.8999 (2473/2748) 1 Intact * Os_TE_813190 Chr1 20121439 20121440 + COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_813189 Os_TE_813189 Chr1 20121435 20121434 - COPIA2-LTR_OS 6433 0.0004 (1/2530) 0 * Os_TE_813190 Os_TE_813153 Chr1 20100990 20093404 - MuDR4_OS 7610 0.8548 (2501/2926) 1 Intact * Os_TE_813143 Chr1 20092881 20092882 - RIRE2_LTR 11306 0.0010 (3/2983) 0 * Os_TE_813142 Os_TE_813142 Chr1 20092877 20092876 + RIREX_LTR 8828 0.0010 (3/2976) 0 * Os_TE_813143 Os_TE_813138 Chr1 20092493 20092328 + ORSgTEMT00501786 149 0.8422 (2509/2979) 1 Intact * Os_TE_813133 Chr1 20091763 20091523 + ORSiTERTOOT00273 5419 0.8392 (2510/2991) 1 Intact Os_TE_813132 Os_TE_813132 Chr1 20091523 20091763 - ORSiTERTOOT00273 5419 0.8394 (2503/2982) 1 Intact Os_TE_813133 Os_TE_813131 Chr1 20091362 20091361 + SINE1OS 127 0.1710 (502/2936) 0 * * Os_TE_813124 Chr1 20089622 20090845 - SZ-5LTR 1223 0.8549 (2504/2929) 0.94 Intact * Os_TE_813107 Chr1 20088180 20088181 - STOWAWAY51_OS 246 0.0004 (1/2471) 0 * * Os_TE_813084 Chr1 20084252 20084253 + OLO24 345 0.1408 (410/2911) 0 * * Os_TE_813083 Chr1 20084067 20084068 - COPI2_LTR 4733 0.0012 (3/2515) 0 * * Os_TE_813062 Chr1 20078747 20079010 - STOWAWAY45_OS 266 0.8822 (2360/2675) -1 Intact * Os_TE_813059 Chr1 20077128 20069504 - MuDR4_OS 7610 0.8496 (2379/2800) 1 Intact Os_TE_813049 Os_TE_813049 Chr1 20069503 20077126 - MuDR4_OS 7610 0.7807 (2172/2782) 1 Intact Os_TE_813059 Os_TE_813046 Chr1 20069408 20068665 + CLOUD 734 0.8331 (2381/2858) 1 Intact * Os_TE_813029 Chr1 20063040 20063039 - ORSgTEMT00100291 345 0.0014 (4/2950) 0 * * Os_TE_813027 Chr1 20060247 20059989 - STOWAWAY17_OS 259 0.8407 (2443/2906) 1 Intact Os_TE_813025 Os_TE_813025 Chr1 20059989 20060246 + ORSgTETNOOT01225 240 0.8265 (2286/2766) 1 Intact Os_TE_813027 Os_TE_813021 Chr1 20058745 20058746 + ORSgTEMT01602016 238 0.1746 (515/2949) 0 * * Os_TE_812990 Chr1 20050941 20050942 - COPIA2-LTR_OS 6433 0.0040 (12/2984) 0 * Os_TE_812989 Os_TE_812989 Chr1 20050937 20050936 + COPIA2-LTR_OS 6433 0.0040 (12/2982) 0 * Os_TE_812990 Os_TE_812969 Chr1 20045529 20045530 - ORSgTEMT00501204 149 0.0003 (1/2990) 0 * * Os_TE_812961 Chr1 20040177 20040176 + EXPLORER 210 0.0004 (1/2735) 0 * * Os_TE_812953 Chr1 20037126 20037127 - ORSgTEMT00101588 319 0.0018 (5/2718) 0 * * Os_TE_812949 Chr1 20036008 20036009 + RIREX_LTR 8828 0.0003 (1/2975) 0 * Os_TE_812948 Os_TE_812948 Chr1 20036004 20036003 - RIREX_LTR 8828 0.0003 (1/2970) 0 * Os_TE_812949 Os_TE_812947 Chr1 20034912 20034913 + MPING 430 0.0003 (1/2952) 0 * Os_TE_812946 Os_TE_812946 Chr1 20034910 20034909 - MPING 430 0.0003 (1/2941) 0 * Os_TE_812947 Os_TE_812922 Chr1 20021660 20021661 + SPMLIKE 10989 0.0003 (1/2990) 0 * * Os_TE_812884 Chr1 20015225 20015226 - ORSgTETN00200001 10994 0.0362 (107/2954) 0 * Os_TE_812883 Os_TE_812883 Chr1 20015223 20015222 + SPMLIKE 10989 0.0395 (117/2964) 0 * Os_TE_812884 Os_TE_812877 Chr1 20013520 19990099 - ORSgTERT00201216 11284 0.5670 (1651/2912) 1 Intact Os_TE_812849 Os_TE_812849 Chr1 19990099 20013496 - RIRE2_LTR 11306 0.5725 (1659/2898) 1 Intact Os_TE_812877 Os_TE_812847 Chr1 19988524 19988525 - RIREX_LTR 8828 0.0003 (1/2962) 0 * Os_TE_812846 Os_TE_812846 Chr1 19988520 19988519 + RIREX_LTR 8828 0.0003 (1/2961) 0 * Os_TE_812847 Os_TE_812828 Chr1 19984502 19984501 + ORSgTEMT00900897 248 0.0019 (5/2701) 0 * * Os_TE_812821 Chr1 19983636 19982433 + SETARIA2 1142 0.6510 (1925/2957) 1 Intact Os_TE_812820 Os_TE_812820 Chr1 19982431 19983636 + SETARIA2 1142 0.6538 (1949/2981) 1 Intact Os_TE_812821 Os_TE_812810 Chr1 19979397 19979396 - ORSgTEMT00900741 219 0.0017 (5/2986) 0 * * Os_TE_812794 Chr1 19973356 19973355 + ORSiTERTOOT00226 792 0.0003 (1/2997) 0 * * Os_TE_812782 Chr1 19963217 19963218 + OSTONOR1_LTR 6440 0.0090 (27/2994) 0 * Os_TE_812781 Os_TE_812781 Chr1 19963213 19963212 - ORSiTERT00100062 5674 0.0094 (28/2992) 0 * Os_TE_812782 Os_TE_812778 Chr1 19959600 19956113 - HATOS1 3488 0.6405 (1908/2979) 1 Intact Os_TE_812777 Os_TE_812777 Chr1 19956113 19959600 + HATOS1 3488 0.6363 (1881/2956) 1 Intact Os_TE_812778 Os_TE_812713 Chr1 19917837 19917838 - COPI2_LTR 4733 0.0003 (1/2993) 0 * * Os_TE_812672 Chr1 19901754 19901755 + RIREX_LTR 8828 0.0006 (1/1712) 0 * Os_TE_812671 Os_TE_812671 Chr1 19901750 19901749 - RIREX_LTR 8828 0.0006 (1/1771) 0 * Os_TE_812672 Os_TE_812652 Chr1 19893165 19893166 - CACTA-H 1152 0.0117 (20/1703) 0 * Os_TE_812651 Os_TE_812651 Chr1 19893163 19893162 + CACTA-I 1124 0.0123 (21/1708) 0 * Os_TE_812652 Os_TE_812623 Chr1 19873295 19873294 - COPIA2-LTR_OS 6433 0.0066 (10/1526) 0 * * Os_TE_812577 Chr1 19848416 19848415 + ORSgTETNOOT00908 242 0.0124 (20/1616) 0 * * Os_TE_812533 Chr1 19818513 19818514 - RIRE3A_LTR 10580 0.0006 (1/1712) 0 * * Os_TE_812524 Chr1 19815936 19815937 + ORSiTERTOOT00027 10853 0.0018 (3/1711) 0 * Os_TE_812523 Os_TE_812523 Chr1 19815932 19815931 - RIRE3A_LTR 10580 0.0018 (3/1699) 0 * Os_TE_812524 Os_TE_812510 Chr1 19811154 19811155 + ORSiCMCM00100019 2717 0.0005 (1/1864) 0 * * Os_TE_812508 Chr1 19811139 19811140 + RIRE3A_LTR 10580 0.0005 (1/2005) 0 * * Os_TE_812363 Chr1 19742732 19742733 + RIRE3A_LTR 10580 0.0012 (2/1674) 0 * * Os_TE_812192 Chr1 19641113 19641114 - RIRE3A_LTR 10580 0.0004 (1/2507) 0 * Os_TE_812191 Os_TE_812191 Chr1 19641109 19641108 + RIRE3A_LTR 10580 0.0004 (1/2506) 0 * Os_TE_812192 Os_TE_812190 Chr1 19640143 19640142 - TRUNCATOR 2918 0.2687 (674/2508) 0 * Os_TE_812189 Os_TE_812189 Chr1 19640142 19640143 + TRUNCATOR 2918 0.2788 (694/2489) 0 * Os_TE_812190 Os_TE_812187 Chr1 19639531 19639530 + RIRE3A_LTR 10580 0.0076 (19/2490) 0 * * Os_TE_812152 Chr1 19600890 19637953 + RIREX_LTR 8828 0.7313 (1821/2490) 1 Intact * Os_TE_812123 Chr1 19579601 19588987 - RIRE3A_LTR 10580 0.6643 (1609/2422) 1 Intact * Os_TE_812121 Chr1 19579472 19579471 - ORSiTERT00200154 9386 0.0095 (23/2432) 0 * * Os_TE_812118 Chr1 19578235 19578236 - TRUNCATOR2_LTR 2904 0.0004 (1/2335) 0 * Os_TE_812117 Os_TE_812117 Chr1 19578231 19578230 + ORSiTERTOOT00028 8600 0.0004 (1/2262) 0 * Os_TE_812118 Os_TE_812089 Chr1 19552034 19552035 - SZ-4_LTR 5991 0.0004 (1/2482) 0 * Os_TE_812088 Os_TE_812088 Chr1 19552030 19552029 + SZ-4_LTR 5991 0.0004 (1/2468) 0 * Os_TE_812089 Os_TE_812053 Chr1 19540411 19540412 + WANDERER 232 0.0272 (70/2571) 0 * * Os_TE_812021 Chr1 19518898 19539550 + COPIA3-LTR_OS 5061 0.5895 (1742/2955) 1 Intact * Os_TE_812020 Chr1 19518601 19518602 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_812019 Os_TE_812019 Chr1 19518597 19518596 + COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_812020 Os_TE_812018 Chr1 19516770 19512574 + SEVERIN-2 1952 0.6027 (1770/2937) 1 Intact * Os_TE_812007 Chr1 19510363 19510364 + INDITTO 263 0.0017 (4/2345) 0 * * Os_TE_812006 Chr1 19510295 19510296 - INDITTO 263 0.0064 (19/2992) 0 * * Os_TE_812005 Chr1 19510279 19510280 - MPING 430 0.0003 (1/2999) 0 * * Os_TE_811994 Chr1 19505924 19505925 + CASTAWAY-3 314 0.0209 (62/2963) 0 * * Os_TE_811993 Chr1 19504085 19504086 + F770 284 0.1073 (310/2890) 0 * Os_TE_811992 Os_TE_811992 Chr1 19504083 19504082 - F770 284 0.1049 (305/2907) 0 * Os_TE_811993 Os_TE_811982 Chr1 19493409 19483592 - ENSPM6_OS 9815 0.5362 (1554/2898) 1 Intact Os_TE_811981 Os_TE_811981 Chr1 19483592 19493409 + ENSPM5_OS 9581 0.5357 (1562/2916) 1 Intact Os_TE_811982 Os_TE_811979 Chr1 19483463 19483462 + SPMLIKE 10989 0.0007 (2/2939) -1 * * Os_TE_811941 Chr1 19479345 19479344 + ORSiCMCM00100019 2717 0.0608 (180/2961) 0 * * Os_TE_811933 Chr1 19477642 19477641 + ORSgTEMT01701983 154 0.0004 (1/2649) 0 * * Os_TE_811899 Chr1 19458441 19458440 + COPI2_LTR 4733 0.0115 (25/2172) 0 * * Os_TE_811897 Chr1 19458433 19458432 + ORSgTEMT06100010 269 0.0144 (33/2296) 0 * * Os_TE_811890 Chr1 19454924 19454923 + ORSgTEMT01602181 239 0.0003 (1/2999) 0 * Os_TE_811889 Os_TE_811889 Chr1 19454921 19454922 - ORSgTEMT01601493 303 0.0003 (1/2998) 0 * Os_TE_811890 Os_TE_811878 Chr1 19453097 19453098 + RIREX_LTR 8828 0.0020 (6/2984) 0 * Os_TE_811877 Os_TE_811877 Chr1 19453093 19453092 - RIREX_LTR 8828 0.0017 (5/2969) 0 * Os_TE_811878 Os_TE_811836 Chr1 19435266 19435267 - TYPEM 227 0.0104 (31/2981) 0 * * Os_TE_811833 Chr1 19434436 19434435 + RIRE3_LTR 12054 0.0007 (2/2974) 0 * * Os_TE_811831 Chr1 19434066 19434067 - COPIA2-LTR_OS 6433 0.0003 (1/2954) 0 * Os_TE_811830 Os_TE_811830 Chr1 19434062 19434061 + COPIA2-LTR_OS 6433 0.0003 (1/2978) 0 * Os_TE_811831 Os_TE_811763 Chr1 19410694 19410695 + COPIA2-LTR_OS 6433 0.0027 (8/2987) 0 * Os_TE_811762 Os_TE_811762 Chr1 19410690 19410689 - COPIA2-LTR_OS 6433 0.0033 (10/2987) 0 * Os_TE_811763 Os_TE_811739 Chr1 19406690 19406691 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_811738 Os_TE_811738 Chr1 19406686 19406685 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_811739 Os_TE_811716 Chr1 19389262 19389261 + RETRO2A_LTR 12895 0.3884 (1162/2992) 0 * * Os_TE_811711 Chr1 19381811 19381812 - STOWAWAY11_OS 292 0.0194 (58/2983) 0 * Os_TE_811710 Os_TE_811710 Chr1 19381810 19381809 + STOWAWAY11_OS 292 0.0194 (58/2984) 0 * Os_TE_811711 Os_TE_811703 Chr1 19377441 19377442 - SZ-67LTR 1540 0.0478 (76/1590) 0 * Os_TE_811702 Os_TE_811702 Chr1 19377437 19377436 + SZ-67LTR 1540 0.0371 (50/1349) -1 * Os_TE_811703 Os_TE_811700 Chr1 19377186 19377185 + ORSiCMCM00100019 2717 0.0163 (46/2827) -1 * * Os_TE_811685 Chr1 19371172 19371173 + COPIA2-LTR_OS 6433 0.0007 (2/2996) 0 * * Os_TE_811675 Chr1 19366543 19366331 + ORSgTEMT01601122 212 0.7192 (2054/2856) 1 Intact Os_TE_811673 Os_TE_811673 Chr1 19366303 19366543 + ORSgTEMT01601122 212 0.7240 (2109/2913) 1 Intact Os_TE_811675 Os_TE_811663 Chr1 19359939 19359938 + COPIA2-LTR_OS 6433 0.0193 (58/2998) 0 * * Os_TE_811659 Chr1 19354554 19354555 + ORSiTERTOOT00296 5553 0.0088 (26/2964) 0 * Os_TE_811658 Os_TE_811658 Chr1 19354550 19354549 - SC-3_LTR 5748 0.0098 (29/2968) 0 * Os_TE_811659 Os_TE_811652 Chr1 19350322 19350323 + ENSPM5_OS 9581 0.0180 (48/2674) 0 * Os_TE_811651 Os_TE_811651 Chr1 19350320 19350319 - ENSPM6_OS 9815 0.0147 (36/2451) 0 * Os_TE_811652 Os_TE_811611 Chr1 19334376 19334377 - ENSPM5_OS 9581 0.3347 (980/2928) 0 * Os_TE_811610 Os_TE_811610 Chr1 19334374 19334373 + ENSPM5_OS 9581 0.3395 (1004/2957) 0 * Os_TE_811611 Os_TE_811596 Chr1 19328572 19329658 + RETRO2_LTR 12874 0.5064 (1430/2824) 1 Solo_LTR * Os_TE_811589 Chr1 19328135 19328134 - MPING 430 0.0003 (1/2879) 0 * * Os_TE_811570 Chr1 19320364 19320365 + ORSiTERTOOT00296 5553 0.0003 (1/2990) 0 * Os_TE_811569 Os_TE_811569 Chr1 19320360 19320359 - SC-3_LTR 5748 0.0003 (1/2995) 0 * Os_TE_811570 Os_TE_811564 Chr1 19313876 19313877 - SC-3_LTR 5748 0.0003 (1/2980) 0 * Os_TE_811563 Os_TE_811563 Chr1 19313872 19313871 + ORSiTERTOOT00296 5553 0.0003 (1/2975) 0 * Os_TE_811564 Os_TE_811536 Chr1 19292392 19292393 + ORSiTERTOOT00028 8600 0.0003 (1/2990) 0 * Os_TE_811535 Os_TE_811535 Chr1 19292388 19292387 - TRUNCATOR2_LTR 2904 0.0003 (1/2989) 0 * Os_TE_811536 Os_TE_811512 Chr1 19283936 19283937 - RIRE2_LTR 11306 0.0199 (59/2960) 0 * Os_TE_811511 Os_TE_811511 Chr1 19283932 19283931 - ORSgTERT00201216 11284 0.0196 (58/2961) 0 * Os_TE_811512 Os_TE_811490 Chr1 19268380 19268381 + ORSiTERTOOT00296 5553 0.0003 (1/2972) 0 * Os_TE_811489 Os_TE_811489 Chr1 19268376 19268375 - SC-3_LTR 5748 0.0003 (1/2960) 0 * Os_TE_811490 Os_TE_811470 Chr1 19257274 19257275 - ORSiTERTOOT00333 4719 0.0476 (142/2981) 0 * Os_TE_811469 Os_TE_811469 Chr1 19257271 19257270 + ORSiTERTOOT00333 4719 0.0473 (141/2982) 0 * Os_TE_811470 Os_TE_811465 Chr1 19254766 19254767 - SC-3_LTR 5748 0.0207 (62/2991) 0 * Os_TE_811464 Os_TE_811464 Chr1 19254762 19254761 + SC-3_LTR 5748 0.0204 (61/2992) 0 * Os_TE_811465 Os_TE_811458 Chr1 19254074 19254073 + OSTE14 885 0.3982 (1189/2986) 0 * * Os_TE_811442 Chr1 19248610 19248609 + ORSgTETN00200005 1121 0.5087 (1515/2978) 0 * * Os_TE_811409 Chr1 19233625 19233626 + ORSgTEMT00500476 150 0.0010 (3/2932) 0 * * Os_TE_811361 Chr1 19204194 19204193 - ENSPM3_OS 10837 0.8473 (2520/2974) 0 * * Os_TE_811346 Chr1 19199805 19199806 - ORSgTERT00201216 11284 0.0094 (28/2985) 0 * Os_TE_811345 Os_TE_811345 Chr1 19199801 19199800 - RIRE2_LTR 11306 0.0094 (28/2984) 0 * Os_TE_811346 Os_TE_811343 Chr1 19199224 19199223 - ORSgTEMT02400246 177 0.0101 (30/2984) 0 * * Os_TE_811306 Chr1 19176681 19177195 + DS-RICE3N 525 0.4731 (1380/2917) 1 Intact * Os_TE_811197 Chr1 19115201 19115202 - MuDR3_OS 8604 0.0305 (86/2816) 0 * Os_TE_811196 Os_TE_811196 Chr1 19115193 19115192 - MuDR3_OS 8604 0.0390 (110/2822) 0 * Os_TE_811197 Os_TE_811191 Chr1 19110883 19110884 + OSTE33 1012 0.0057 (17/2989) 0 * * Os_TE_811169 Chr1 19102186 19102185 + F770 284 0.0066 (19/2866) 0 * * Os_TE_811168 Chr1 19101982 19101983 - RETRO2_LTR 12874 0.0057 (17/2971) 0 * Os_TE_811167 Os_TE_811167 Chr1 19101978 19101977 + RETRO2_LTR 12874 0.0051 (15/2968) 0 * Os_TE_811168 Os_TE_811154 Chr1 19097040 19097039 + ORSiTERTOOT00074 4935 0.0003 (1/2887) 0 * * Os_TE_811148 Chr1 19094379 19094378 + TRUNCATOR 2918 0.0890 (260/2921) 0 * * Os_TE_811121 Chr1 19079214 19079215 - MuDR2_OS 6770 0.0058 (17/2927) 0 * Os_TE_811120 Os_TE_811120 Chr1 19079204 19079203 + MuDR2_OS 6770 0.0058 (15/2566) 0 * Os_TE_811121 Os_TE_811102 Chr1 19074534 19074535 + ORSiTERTOOT00028 8600 0.0047 (14/2993) 0 * Os_TE_811101 Os_TE_811101 Chr1 19074530 19074529 - TRUNCATOR2_LTR 2904 0.0050 (15/2992) 0 * Os_TE_811102 Os_TE_811096 Chr1 19072967 19072968 + SPMLIKE 10989 0.3299 (962/2916) 0 * Os_TE_811095 Os_TE_811095 Chr1 19072965 19072964 - ORSgTETN00200001 10994 0.2677 (726/2712) 0 * Os_TE_811096 Os_TE_811088 Chr1 19071028 19071029 + TWIF 586 0.0003 (1/2965) 0 * Os_TE_811087 Os_TE_811087 Chr1 19071021 19071020 - ORSiTETNOOT00134 607 0.0034 (10/2970) 0 * Os_TE_811088 Os_TE_811070 Chr1 19066135 19066134 + ORSgTEMT01601591 242 0.0003 (1/2987) 0 * Os_TE_811069 Os_TE_811069 Chr1 19066129 19066130 + STOWAWAY51_OS 246 0.0003 (1/2979) 0 * Os_TE_811070 Os_TE_811050 Chr1 19058491 19058490 + ORSiTERTOOT00226 792 0.0003 (1/2996) 0 * * Os_TE_811032 Chr1 19053564 19053565 - TRUNCATOR 2918 0.1034 (306/2959) 0 * * Os_TE_811031 Chr1 19053303 19053302 - GYPSIA_LTR 20595 0.0014 (4/2890) 0 * * Os_TE_810983 Chr1 19044345 19044346 - COPIA2-LTR_OS 6433 0.0003 (1/2982) 0 * Os_TE_810982 Os_TE_810982 Chr1 19044341 19044340 + COPIA2-LTR_OS 6433 0.0003 (1/2978) 0 * Os_TE_810983 Os_TE_810980 Chr1 19044119 19044118 - COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * * Os_TE_810978 Chr1 19043870 19043871 + RIREX_LTR 8828 0.0570 (163/2861) 0 * Os_TE_810977 Os_TE_810977 Chr1 19043866 19043865 - RIREX_LTR 8828 0.0563 (168/2985) 0 * Os_TE_810978 Os_TE_810957 Chr1 19039810 19039809 + ORSgTEMT00901557 189 0.0003 (1/2972) 0 * * Os_TE_810949 Chr1 19038537 19038538 + ORSiCMCM00100019 2717 0.0101 (30/2981) 0 * Os_TE_810948 Os_TE_810948 Chr1 19038533 19038532 - TRUNCATOR2_LTR 2904 0.0107 (32/2980) 0 * Os_TE_810949 Os_TE_810939 Chr1 19036997 19036998 - ORSgTEMT00500081 146 0.0003 (1/2965) 0 * * Os_TE_810933 Chr1 19031980 19036650 - OSTE15 1168 0.4136 (1141/2759) 1 Intact * Os_TE_810928 Chr1 19029703 19029704 - ORSgTERT00201216 11284 0.6050 (1784/2949) 0 * Os_TE_810927 Os_TE_810927 Chr1 19029699 19029698 - RIRE2_LTR 11306 0.6003 (1748/2912) 0 * Os_TE_810928 Os_TE_810922 Chr1 19028796 19028797 + TWIFBIG 3567 0.0084 (25/2984) 0 * Os_TE_810921 Os_TE_810921 Chr1 19028789 19028788 - ORSiTETNOOT00216 3569 0.0091 (27/2980) 0 * Os_TE_810922 Os_TE_810906 Chr1 19025327 19025328 - INDITTO 263 0.0003 (1/2990) 0 * * Os_TE_810902 Chr1 19024824 19024967 - ORSgTEMT00502194 153 0.4396 (1238/2816) 1 Intact * Os_TE_810900 Chr1 19024417 19024418 - CENTRE 280 0.0007 (2/2995) 0 * Os_TE_810899 Os_TE_810899 Chr1 19024415 19024414 + CENTRE 280 0.0007 (2/2979) 0 * Os_TE_810900 Os_TE_810898 Chr1 19024242 19024243 - COPIA2-LTR_OS 6433 0.0007 (2/2995) 0 * Os_TE_810897 Os_TE_810897 Chr1 19024238 19024237 + COPIA2-LTR_OS 6433 0.0007 (2/2995) 0 * Os_TE_810898 Os_TE_810895 Chr1 19022803 19022804 - RETROSAT5_LTR 13878 0.0010 (3/2988) 0 * * Os_TE_810890 Chr1 19015813 19015814 + OLO24 345 0.5089 (1260/2476) 0 * * Os_TE_810889 Chr1 19015782 19015781 - ORSgTETN00200001 10994 0.5235 (1328/2537) 0 * Os_TE_810888 Os_TE_810888 Chr1 19015781 19015782 + CACTA-B 1103 0.5981 (1768/2956) 0 * Os_TE_810889 Os_TE_810885 Chr1 19011977 19011751 + ORSgTETNOOT00908 242 0.4061 (1217/2997) 1 Intact * Os_TE_810867 Chr1 19008653 19008652 - NDNA2TNA_OS 346 0.6070 (1778/2929) 0 * * Os_TE_810846 Chr1 19005282 19005283 + DS-RICE2N 613 0.0027 (8/2980) 0 * Os_TE_810845 Os_TE_810845 Chr1 19005275 19005274 - DS-RICE2N 613 0.0024 (7/2975) 0 * Os_TE_810846 Os_TE_810838 Chr1 19002669 19002670 - MuDR3_OS 8604 0.5885 (1715/2914) 0 * Os_TE_810837 Os_TE_810837 Chr1 19002660 19002659 - MuDR3_OS 8604 0.5952 (1748/2937) 0 * Os_TE_810838 Os_TE_810834 Chr1 19002370 19002371 + SZ-52_LTR 13107 0.0003 (1/2969) 0 * Os_TE_810833 Os_TE_810833 Chr1 19002366 19002365 - SZ-52_LTR 13107 0.0003 (1/2968) 0 * Os_TE_810834 Os_TE_810822 Chr1 19000192 18999906 - ORSgTEMT04300008 290 0.4033 (1168/2896) 1 Intact * Os_TE_810797 Chr1 18990634 18990633 - TRUNCATOR 2918 0.0520 (153/2941) 0 * * Os_TE_810796 Chr1 18990633 18990634 + TRUNCATOR 2918 0.0545 (161/2954) 0 * Os_TE_810795 Os_TE_810795 Chr1 18990627 18990626 - ORSiTERT00200154 9386 0.0491 (144/2934) 0 * Os_TE_810796 Os_TE_810789 Chr1 18988055 18988056 - ATLANTYS-LTR_OS 13740 0.0003 (1/2985) 0 * * Os_TE_810777 Chr1 18983352 18983353 - SC-3_LTR 5748 0.0003 (1/2987) 0 * Os_TE_810776 Os_TE_810776 Chr1 18983348 18983347 + ORSiTERTOOT00296 5553 0.0003 (1/2988) 0 * Os_TE_810777 Os_TE_810772 Chr1 18977357 18977356 + TREP219 104 0.0026 (7/2720) 0 * * Os_TE_810769 Chr1 18971356 18971357 - RETROSAT2LTRA 3112 0.0562 (168/2990) 0 * * Os_TE_810765 Chr1 18970408 18970409 - F569 228 0.0431 (129/2996) 0 * Os_TE_810764 Os_TE_810764 Chr1 18970406 18970405 + F569 228 0.0411 (123/2996) 0 * Os_TE_810765 Os_TE_810757 Chr1 18966076 18966077 - SC-3_LTR 5748 0.0003 (1/2984) 0 * Os_TE_810756 Os_TE_810756 Chr1 18966072 18966071 + ORSiTERTOOT00296 5553 0.0003 (1/2985) 0 * Os_TE_810757 Os_TE_810741 Chr1 18959050 18959049 + ORSgTEMT01700465 155 0.0027 (8/2945) 0 * Os_TE_810740 Os_TE_810740 Chr1 18959047 18959048 - ORSgTEMT01700915 154 0.0032 (8/2503) 0 * Os_TE_810741 Os_TE_810718 Chr1 18945601 18945602 + TNR2A 152 0.0019 (5/2573) 0 * * Os_TE_810685 Chr1 18925925 18925926 - SC-3_LTR 5748 0.0003 (1/2991) 0 * * Os_TE_810671 Chr1 18921084 18921085 - TRUNCATOR2_LTR 2904 0.0017 (5/2984) 0 * Os_TE_810670 Os_TE_810670 Chr1 18921080 18921079 + ORSiCMCM00100019 2717 0.0017 (5/2993) 0 * Os_TE_810671 Os_TE_810641 Chr1 18907565 18907564 + TRUNCATOR 2918 0.0037 (11/2994) 0 * * Os_TE_810624 Chr1 18895533 18895534 - TRUNCATOR2_LTR 2904 0.0027 (8/2988) 0 * Os_TE_810623 Os_TE_810623 Chr1 18895529 18895528 + TRUNCATOR2_LTR 2904 0.0027 (8/2986) 0 * Os_TE_810624 Os_TE_810605 Chr1 18889445 18889446 + RIRE2_LTR 11306 0.0037 (11/2997) 0 * * Os_TE_810562 Chr1 18872614 18872615 - TRUNCATOR2_LTR 2904 0.0104 (31/2972) 0 * Os_TE_810561 Os_TE_810561 Chr1 18872610 18872609 + ORSiCMCM00100019 2717 0.0098 (29/2970) 0 * Os_TE_810562 Os_TE_810557 Chr1 18871340 18871341 + SPMLIKE 10989 0.0003 (1/2946) 0 * Os_TE_810556 Os_TE_810556 Chr1 18871338 18871337 - ORSgTETN00200001 10994 0.0003 (1/2951) 0 * Os_TE_810557 Os_TE_810541 Chr1 18863566 18863567 - RETROSAT2LTRA 3112 0.0007 (2/2968) 0 * * Os_TE_810532 Chr1 18861853 18861854 - CACTA-I 1124 0.0013 (4/2972) 0 * Os_TE_810531 Os_TE_810531 Chr1 18861851 18861850 + CACTA-I 1124 0.0013 (4/2970) 0 * Os_TE_810532 Os_TE_810518 Chr1 18857558 18857559 - F569 228 0.0010 (3/2975) 0 * Os_TE_810517 Os_TE_810517 Chr1 18857556 18857555 + F569 228 0.0010 (3/2979) 0 * Os_TE_810518 Os_TE_810514 Chr1 18857165 18857164 - ORSgTEMT01701302 154 0.0010 (3/2958) 0 * Os_TE_810513 Os_TE_810513 Chr1 18857162 18857163 + ORSgTEMT01701104 154 0.0013 (4/2989) 0 * Os_TE_810514 Os_TE_810487 Chr1 18845805 18845806 + ORSiTERTOOT00027 10853 0.0057 (17/2970) 0 * Os_TE_810486 Os_TE_810486 Chr1 18845801 18845800 - RIRE3A_LTR 10580 0.0061 (18/2953) 0 * Os_TE_810487 Os_TE_810469 Chr1 18835499 18835500 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_810468 Os_TE_810468 Chr1 18835495 18835494 + COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_810469 Os_TE_810461 Chr1 18828923 18828924 + MPING 430 0.0010 (3/2995) 0 * Os_TE_810460 Os_TE_810460 Chr1 18828921 18828920 - MPING 430 0.0010 (3/2996) 0 * Os_TE_810461 Os_TE_810459 Chr1 18828751 18828750 + ORSgTEMT01602181 239 0.0010 (3/2998) 0 * Os_TE_810458 Os_TE_810458 Chr1 18828748 18828749 - ORSgTEMT01601432 239 0.0007 (2/2998) 0 * Os_TE_810459 Os_TE_810450 Chr1 18824231 18824230 - COPI2_LTR 4733 0.0003 (1/2976) 0 * * Os_TE_810449 Chr1 18821881 18821882 + CRATA 4786 0.0065 (19/2902) 0 * Os_TE_810448 Os_TE_810448 Chr1 18821874 18821873 - CRATA 4786 0.0066 (19/2894) 0 * Os_TE_810449 Os_TE_810430 Chr1 18819629 18819630 + MPING 430 0.0003 (1/2958) 0 * Os_TE_810429 Os_TE_810429 Chr1 18819627 18819626 - MPING 430 0.0003 (1/2976) 0 * Os_TE_810430 Os_TE_810428 Chr1 18819577 18819576 + STOWAWAY44_OS 240 0.1434 (428/2984) 0 * Os_TE_810427 Os_TE_810427 Chr1 18819574 18819575 - STOWAWAY44_OS 240 0.1467 (438/2986) 0 * Os_TE_810428 Os_TE_810422 Chr1 18817595 18817594 + ORSgTEMT01600288 233 0.0112 (33/2951) 0 * Os_TE_810421 Os_TE_810421 Chr1 18817538 18817539 - ORSgTEMT01702346 154 0.0153 (45/2945) 0 * Os_TE_810422 Os_TE_810419 Chr1 18815891 18815890 - CACTA-H 1152 0.4309 (1281/2973) 0 * Os_TE_810418 Os_TE_810418 Chr1 18815890 18815891 + CACTA-B 1103 0.4400 (1317/2993) 0 * Os_TE_810419 Os_TE_810416 Chr1 18815789 18815788 - RIREX_LTR 8828 0.0242 (72/2981) 0 * * Os_TE_810396 Chr1 18804141 18804142 + EnSpm-N2_OS 1282 0.0150 (45/2992) 0 * Os_TE_810395 Os_TE_810395 Chr1 18804139 18804138 - EnSpm-N2_OS 1282 0.0141 (42/2988) 0 * Os_TE_810396 Os_TE_810387 Chr1 18802437 18802438 + INDITTO 263 0.0043 (13/2992) 0 * Os_TE_810386 Os_TE_810386 Chr1 18802435 18802434 - INDITTO 263 0.0043 (13/2994) 0 * Os_TE_810387 Os_TE_810385 Chr1 18802362 18802361 + ORSgTEMT00101674 340 0.0040 (12/2989) 0 * Os_TE_810384 Os_TE_810384 Chr1 18802361 18802362 + NDNA1TNA_OS 334 0.0040 (12/2989) 0 * Os_TE_810385 Os_TE_810378 Chr1 18801430 18801429 - CRM-LTR_OS 7749 0.0007 (2/2959) 0 * * Os_TE_810349 Chr1 18788377 18788376 - COPIA2-LTR_OS 6433 0.0004 (1/2849) 0 * * Os_TE_810341 Chr1 18784712 18784713 + SZ-19LTR 1513 0.0164 (45/2741) 0 * Os_TE_810340 Os_TE_810340 Chr1 18784708 18784707 - SZ-19LTR 1513 0.0166 (46/2765) 0 * Os_TE_810341 Os_TE_810327 Chr1 18780745 18780746 - TRUNCATOR 2918 0.3065 (430/1403) 0 * * Os_TE_810322 Chr1 18778830 18778831 - ORSgTEMT01400014 209 0.0163 (44/2698) 0 * * Os_TE_810320 Chr1 18778529 18778530 - COPIA2-LTR_OS 6433 0.4429 (1273/2874) 0 * * Os_TE_810315 Chr1 18777223 18777222 + NDNA1TNA_OS 334 0.0078 (23/2966) 0 * * Os_TE_810314 Chr1 18777213 18777212 - NDNA1TNA_OS 334 0.0014 (4/2911) 0 * * Os_TE_810294 Chr1 18770638 18770639 - TRUNCATOR2_LTR 2904 0.2035 (610/2998) 0 * Os_TE_810293 Os_TE_810293 Chr1 18770634 18770633 + TRUNCATOR2_LTR 2904 0.2002 (599/2992) 0 * Os_TE_810294 Os_TE_810283 Chr1 18763157 18763156 + ORSgTEMT00100291 345 0.0004 (1/2727) 0 * * Os_TE_810277 Chr1 18759854 18759853 + SINE1OS 127 0.0143 (43/2997) 0 * * Os_TE_810264 Chr1 18757583 18757582 - TYPEM 227 0.0141 (41/2904) 0 * Os_TE_810263 Os_TE_810263 Chr1 18757582 18757583 - ORSgTEMT02400246 177 0.0134 (39/2912) 0 * Os_TE_810264 Os_TE_810261 Chr1 18757003 18757002 + ORSgTEMT01602665 238 0.0155 (46/2973) 0 * Os_TE_810260 Os_TE_810260 Chr1 18757000 18757001 - ORSgTEMT01602306 231 0.0151 (45/2971) 0 * Os_TE_810261 Os_TE_810251 Chr1 18753193 18753194 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_810250 Os_TE_810250 Chr1 18753189 18753188 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_810251 Os_TE_810233 Chr1 18747335 18747334 - TRUNCATOR2_LTR 2904 0.0003 (1/2905) 0 * * Os_TE_810231 Chr1 18746408 18746409 - GYPSY-B_LTR 7068 0.0155 (46/2976) 0 * Os_TE_810230 Os_TE_810230 Chr1 18746404 18746403 + GYPSY1-LTR_OS 8900 0.0148 (44/2972) 0 * Os_TE_810231 Os_TE_810199 Chr1 18725889 18725888 + F1275 157 0.0151 (45/2985) 0 * * Os_TE_810196 Chr1 18720802 18720803 - RIRE2_LTR 11306 0.0013 (4/2993) 0 * * Os_TE_810162 Chr1 18711077 18711078 + ORSgTEMT01701016 130 0.0138 (41/2972) 0 * * Os_TE_810157 Chr1 18707625 18707624 + ORSgTEMT01601122 212 0.0172 (51/2972) 0 * Os_TE_810156 Os_TE_810156 Chr1 18707622 18707623 + ORSgTEMT01601122 212 0.0168 (50/2980) 0 * Os_TE_810157 Os_TE_810154 Chr1 18701810 18701809 - STOWAWAY10_OS 259 0.0014 (4/2960) -1 * Os_TE_810153 Os_TE_810153 Chr1 18701809 18701810 - ORSgTEMT00101174 225 0.0010 (3/2965) 0 * Os_TE_810154 Os_TE_810106 Chr1 18673992 18673993 + RIREX_LTR 8828 0.0013 (4/2996) 0 * Os_TE_810105 Os_TE_810105 Chr1 18673988 18673987 - RIREX_LTR 8828 0.0013 (4/2995) 0 * Os_TE_810106 Os_TE_810102 Chr1 18671318 18671319 + OSTE33 1012 0.0003 (1/2988) 0 * Os_TE_810101 Os_TE_810101 Chr1 18671309 18671308 + OSTE33 1012 0.0003 (1/2989) 0 * Os_TE_810102 Os_TE_810099 Chr1 18670561 18670562 - SEVERIN-2 1952 0.0355 (104/2932) 0 * * Os_TE_810097 Chr1 18670166 18670167 + TRUNCATOR 2918 0.0144 (42/2924) 0 * * Os_TE_810095 Chr1 18668168 18667350 + MuDR-N6_OS 836 0.7002 (2058/2939) 1 Intact * Os_TE_810092 Chr1 18666675 18665999 + BAJIELTR 4500 0.7536 (1954/2593) 1 Solo_LTR Os_TE_810089 Os_TE_810089 Chr1 18665999 18666675 - BAJIELTR 4500 0.7340 (2094/2853) 1 Solo_LTR Os_TE_810092 Os_TE_810088 Chr1 18665667 18665668 + SEVERIN-2 1952 0.0014 (4/2840) 0 * * Os_TE_810085 Chr1 18664813 18664812 - ORSgTEMT01601432 239 0.0013 (4/2992) 0 * * Os_TE_810079 Chr1 18661709 18661710 - RETROSAT4_LTR 13504 0.0157 (46/2936) 0 * Os_TE_810078 Os_TE_810078 Chr1 18661705 18661704 + RETROSAT4_LTR 13504 0.0156 (46/2951) 0 * Os_TE_810079 Os_TE_810050 Chr1 18651815 18651816 - MPING 430 0.0004 (1/2838) 0 * Os_TE_810049 Os_TE_810049 Chr1 18651813 18651812 + MPING 430 0.0004 (1/2821) 0 * Os_TE_810050 Os_TE_810021 Chr1 18636069 18636070 - TNR2A 152 0.0009 (1/1085) 0 * * Os_TE_809993 Chr1 18626276 18626277 + COPIA2-LTR_OS 6433 0.0003 (1/2860) 0 * Os_TE_809992 Os_TE_809992 Chr1 18626272 18626271 - COPIA2-LTR_OS 6433 0.0003 (1/2858) 0 * Os_TE_809993 Os_TE_809988 Chr1 18622090 18622089 - ORSiTEMT01100035 500 0.0022 (6/2768) 0 * * Os_TE_809965 Chr1 18604732 18604733 + ORSiTERTOOT00296 5553 0.0003 (1/2990) 0 * Os_TE_809964 Os_TE_809964 Chr1 18604728 18604727 - SC-3_LTR 5748 0.0003 (1/2992) 0 * Os_TE_809965 Os_TE_809962 Chr1 18604409 18604408 - SZ-48LTR 3632 0.0147 (44/2986) 0 * * Os_TE_809941 Chr1 18591625 18591626 + ORSiTERTOOT00296 5553 0.0077 (23/2984) 0 * Os_TE_809940 Os_TE_809940 Chr1 18591621 18591620 - SC-3_LTR 5748 0.0074 (22/2988) 0 * Os_TE_809941 Os_TE_809932 Chr1 18583583 18583582 - ORSgTETN00200001 10994 0.0296 (45/1521) 0 * * Os_TE_809931 Chr1 18582130 18582131 + SPMLIKE 10989 0.0279 (42/1506) 0 * * Os_TE_809897 Chr1 18545938 18553238 - RIREX_LTR 8828 0.4530 (694/1532) 1 Intact * Os_TE_809886 Chr1 18542143 18542144 - OSLINE1-4 4779 0.5175 (1510/2918) 0 * * Os_TE_809885 Chr1 18542090 18542091 + RIREX_LTR 8828 0.0003 (1/2921) 0 * Os_TE_809884 Os_TE_809884 Chr1 18542086 18542085 - RIREX_LTR 8828 0.0004 (1/2857) 0 * Os_TE_809885 Os_TE_809865 Chr1 18531105 18531104 - SZ-55_LTR 10318 0.0004 (1/2844) 0 * * Os_TE_809863 Chr1 18530304 18530305 + COPIA2-LTR_OS 6433 0.0003 (1/2968) 0 * Os_TE_809862 Os_TE_809862 Chr1 18530300 18530299 - COPIA2-LTR_OS 6433 0.0003 (1/2969) 0 * Os_TE_809863 Os_TE_809860 Chr1 18529974 18529973 + MUDROS1 4932 0.2536 (758/2989) 0 * * Os_TE_809853 Chr1 18525921 18525580 - OLO24 345 0.7840 (2182/2783) 1 Intact Os_TE_809850 Os_TE_809850 Chr1 18525577 18525914 - OLO24 345 0.7666 (2204/2875) 1 Intact Os_TE_809853 Os_TE_809847 Chr1 18525279 18525278 + TYPEU3 380 0.2424 (713/2941) 0 * * Os_TE_809846 Chr1 18524158 18524157 - ORSgTETN00200001 10994 0.2378 (688/2893) 0 * * Os_TE_809845 Chr1 18524154 18524155 - CPSC2_LTR 5202 0.0003 (1/2920) 0 * Os_TE_809844 Os_TE_809844 Chr1 18524150 18524149 + CPSC2_LTR 5202 0.0004 (1/2265) 0 * Os_TE_809845 Os_TE_809843 Chr1 18522594 18522593 - EnSpm-12_OS 12603 0.0017 (5/2964) 0 * * Os_TE_809841 Chr1 18520982 18520981 - SZ-25LTR 330 0.0017 (5/2987) 0 * * Os_TE_809840 Chr1 18520719 18520720 - ORSgTERT00201216 11284 0.2638 (724/2745) 0 * Os_TE_809839 Os_TE_809839 Chr1 18520715 18520714 - RIRE2_LTR 11306 0.2406 (685/2847) 0 * Os_TE_809840 Os_TE_809838 Chr1 18520555 18520554 - RIREX_LTR 8828 0.0004 (1/2519) 0 * Os_TE_809837 Os_TE_809837 Chr1 18520549 18520550 + RIREX_LTR 8828 0.0004 (1/2783) 0 * Os_TE_809838 Os_TE_809822 Chr1 18517015 18506013 + SPMLIKE 10989 0.2532 (722/2852) 1 Intact Os_TE_809817 Os_TE_809817 Chr1 18506013 18516951 - ORSgTETN00200001 10994 0.2175 (623/2865) 1 Intact Os_TE_809822 Os_TE_809808 Chr1 18501890 18501889 - TRUNCATOR 2918 0.0168 (50/2983) 0 * Os_TE_809807 Os_TE_809807 Chr1 18501889 18501890 + TRUNCATOR 2918 0.0175 (52/2977) 0 * Os_TE_809808 Os_TE_809801 Chr1 18501008 18501007 - ORSiTERT00200154 9386 0.0017 (5/2943) 0 * * Os_TE_809736 Chr1 18476506 18476507 + ORSgTETNOOT02019 240 0.0148 (44/2970) 0 * Os_TE_809735 Os_TE_809735 Chr1 18476504 18476503 + ORSgTETNOOT00908 242 0.0146 (43/2951) 0 * Os_TE_809736 Os_TE_809733 Chr1 18476293 18476294 + ORSiTERTOOT00034 791 0.0007 (2/2984) 0 * Os_TE_809732 Os_TE_809732 Chr1 18476289 18476288 - SZ-22_LTR 4403 0.0007 (2/2982) 0 * Os_TE_809733 Os_TE_809731 Chr1 18476229 18476230 + ORSiCMCM00100019 2717 0.0033 (10/2993) 0 * * Os_TE_809712 Chr1 18466390 18466391 + UNIQUE 158 0.0014 (4/2946) 0 * Os_TE_809711 Os_TE_809711 Chr1 18466388 18466387 - UNIQUE 158 0.0010 (3/2946) 0 * Os_TE_809712 Os_TE_809710 Chr1 18464627 18464628 + MPING 430 0.0003 (1/2994) 0 * * Os_TE_809703 Chr1 18456055 18456054 + MUDRN3_OS 903 0.0028 (8/2873) 0 * * Os_TE_809691 Chr1 18445736 18445735 + ORSgTEMT01601934 207 0.0024 (7/2953) 0 * * Os_TE_809687 Chr1 18443503 18443502 + ORSgTEMT01702111 154 0.0024 (7/2935) 0 * Os_TE_809686 Os_TE_809686 Chr1 18443500 18443501 - ORSgTEMT01701254 154 0.0024 (7/2935) 0 * Os_TE_809687 Os_TE_809671 Chr1 18439706 18439707 + TNR2A 152 0.0014 (4/2785) 0 * Os_TE_809670 Os_TE_809670 Chr1 18439690 18439689 - TNR2A 152 0.0024 (7/2880) 0 * Os_TE_809671 Os_TE_809647 Chr1 18421956 18421955 + ORSgTEMT01700549 156 0.0017 (5/2980) 0 * * Os_TE_809638 Chr1 18420143 18420144 - STOWAWAY1_OS 149 0.0013 (4/2992) 0 * * Os_TE_809636 Chr1 18419609 18419610 - COPIA2-LTR_OS 6433 0.0013 (4/2987) 0 * Os_TE_809635 Os_TE_809635 Chr1 18419605 18419604 + COPIA2-LTR_OS 6433 0.0013 (4/2988) 0 * Os_TE_809636 Os_TE_809631 Chr1 18419035 18419036 + ORSgTEMT00101674 340 0.0017 (5/2934) 0 * * Os_TE_809629 Chr1 18418939 18418938 + OSTE33 1012 0.1988 (587/2953) 0 * * Os_TE_809613 Chr1 18408805 18408806 - TYPEU1 380 0.0119 (34/2865) 0 * Os_TE_809612 Os_TE_809612 Chr1 18408797 18408796 + TYPEU4 402 0.0103 (29/2821) 0 * Os_TE_809613 Os_TE_809608 Chr1 18405715 18405714 - ORSgTETN00200001 10994 0.0212 (62/2931) 0 * * Os_TE_809604 Chr1 18405093 18405094 - INDITTO 263 0.0183 (54/2949) 0 * Os_TE_809603 Os_TE_809603 Chr1 18405091 18405090 + INDITTO 263 0.0180 (53/2946) 0 * Os_TE_809604 Os_TE_809595 Chr1 18400480 18400481 + COPIA2-LTR_OS 6433 0.0013 (4/2990) 0 * Os_TE_809594 Os_TE_809594 Chr1 18400476 18400475 - COPIA2-LTR_OS 6433 0.0017 (5/2991) 0 * Os_TE_809595 Os_TE_809588 Chr1 18394340 18394341 + MDR2 6967 0.0033 (10/2991) 0 * Os_TE_809587 Os_TE_809587 Chr1 18394332 18394331 - MDR2 6967 0.0033 (10/2990) 0 * Os_TE_809588 Os_TE_809586 Chr1 18394099 18394100 + HARB-1_OS 5166 0.0010 (3/2995) 0 * Os_TE_809585 Os_TE_809585 Chr1 18394097 18394096 - HARB-1_OS 5166 0.0010 (3/2995) 0 * Os_TE_809586 Os_TE_809582 Chr1 18392273 18392274 - SC-3_LTR 5748 0.0033 (10/2997) 0 * Os_TE_809581 Os_TE_809581 Chr1 18392269 18392268 + ORSiTERTOOT00296 5553 0.0033 (10/2996) 0 * Os_TE_809582 Os_TE_809573 Chr1 18388530 18388531 + COPIA2-LTR_OS 6433 0.0010 (3/2990) 0 * Os_TE_809572 Os_TE_809572 Chr1 18388526 18388525 - COPIA2-LTR_OS 6433 0.0010 (3/2991) 0 * Os_TE_809573 Os_TE_809567 Chr1 18384400 18384401 + ORSiCMCM00100019 2717 0.0023 (7/2988) 0 * Os_TE_809566 Os_TE_809566 Chr1 18384396 18384395 - TRUNCATOR2_LTR 2904 0.0023 (7/2984) 0 * Os_TE_809567 Os_TE_809474 Chr1 18347259 18347260 - ORSiTERT00100062 5674 0.0003 (1/2942) 0 * * Os_TE_809465 Chr1 18346006 18346005 + SPMLIKE 10989 0.0124 (36/2905) 0 * * Os_TE_809440 Chr1 18338701 18338702 + ORSiTERTOOT00097 759 0.0003 (1/2986) 0 * Os_TE_809439 Os_TE_809439 Chr1 18338697 18338696 - SZ-22_LTR 4403 0.0003 (1/2990) 0 * Os_TE_809440 Os_TE_809425 Chr1 18331894 18331895 - ORSgTETNOOT00754 253 0.0102 (30/2939) 0 * Os_TE_809424 Os_TE_809424 Chr1 18331892 18331891 + ORSgTETNOOT01834 251 0.0097 (29/2978) 0 * Os_TE_809425 Os_TE_809421 Chr1 18330971 18330972 - NDNA1TNA_OS 334 0.0455 (134/2943) 0 * Os_TE_809420 Os_TE_809420 Chr1 18330969 18330968 + NDNA1TNA_OS 334 0.0452 (133/2940) 0 * Os_TE_809421 Os_TE_809419 Chr1 18330741 18330740 - NDNA1TNA_OS 334 0.1453 (426/2931) 0 * Os_TE_809418 Os_TE_809418 Chr1 18330737 18330738 + NDNA1TNA_OS 334 0.2135 (448/2098) 0 * Os_TE_809419 Os_TE_809401 Chr1 18326470 18326471 - ORSgTEMT00600085 364 0.2095 (624/2978) 0 * Os_TE_809400 Os_TE_809400 Chr1 18326468 18326467 + CASTAWAY 364 0.2116 (632/2987) 0 * Os_TE_809401 Os_TE_809391 Chr1 18324215 18307738 - TESSBIG 4057 0.3802 (1132/2977) 1 Intact * Os_TE_809377 Chr1 18307267 18307268 + ORSgTETNOOT00012 241 0.0003 (1/2964) 0 * * Os_TE_809376 Chr1 18306447 18306446 - STOWAWAY51_OS 246 0.0003 (1/2973) 0 * * Os_TE_809374 Chr1 18306288 18297825 - MuDR4_OS 7610 0.3783 (1130/2987) 1 Intact * Os_TE_809334 Chr1 18286697 18286698 + OSTONOR1_LTR 6440 0.0003 (1/2978) 0 * Os_TE_809333 Os_TE_809333 Chr1 18286693 18286692 - ORSiTERT00100062 5674 0.0003 (1/2981) 0 * Os_TE_809334 Os_TE_809301 Chr1 18267877 18267523 - CASLET 354 0.3257 (948/2911) 1 Intact * Os_TE_809280 Chr1 18262522 18262523 - RIREX_LTR 8828 0.0003 (1/2997) 0 * Os_TE_809279 Os_TE_809279 Chr1 18262518 18262517 + RIREX_LTR 8828 0.0003 (1/2996) 0 * Os_TE_809280 Os_TE_809198 Chr1 18235592 18235593 - RIRE2_LTR 11306 0.0010 (3/2990) 0 * Os_TE_809197 Os_TE_809197 Chr1 18235588 18235587 + RIRE2_LTR 11306 0.0010 (3/2986) 0 * Os_TE_809198 Os_TE_809190 Chr1 18234601 18234600 - TRUNCATOR 2918 0.0013 (4/2978) 0 * * Os_TE_809180 Chr1 18232599 18232600 + COPIA2-LTR_OS 6433 0.0013 (4/2980) 0 * Os_TE_809179 Os_TE_809179 Chr1 18232595 18232594 - COPIA2-LTR_OS 6433 0.0013 (4/2984) 0 * Os_TE_809180 Os_TE_809177 Chr1 18232329 18232328 - SC-8_LTR 4951 0.0007 (2/2993) 0 * * Os_TE_809135 Chr1 18217007 18217008 + RIREX_LTR 8828 0.0010 (3/2991) 0 * Os_TE_809134 Os_TE_809134 Chr1 18217003 18217002 - RIREX_LTR 8828 0.0010 (3/2991) 0 * Os_TE_809135 Os_TE_809133 Chr1 18216195 18216194 + TRUNCATOR 2918 0.0058 (17/2909) 0 * Os_TE_809132 Os_TE_809132 Chr1 18216194 18216195 - TRUNCATOR 2918 0.0037 (11/2960) 0 * Os_TE_809133 Os_TE_809121 Chr1 18204959 18204960 + HARB-1_OS 5166 0.0004 (1/2713) 0 * Os_TE_809120 Os_TE_809120 Chr1 18204957 18204956 - HARB-1_OS 5166 0.0004 (1/2696) 0 * Os_TE_809121 Os_TE_809116 Chr1 18204103 18204323 - ORSgTEMT02400179 221 0.3344 (967/2892) 1 Intact * Os_TE_809095 Chr1 18199856 18199855 - RIREX_LTR 8828 0.0003 (1/2985) 0 * * Os_TE_809093 Chr1 18199558 18199557 - COPIA2-LTR_OS 6433 0.0003 (1/2927) 0 * * Os_TE_809067 Chr1 18194499 18194500 - RETRO1_LTR 8314 0.0134 (40/2995) 0 * Os_TE_809066 Os_TE_809066 Chr1 18194495 18194494 + RETRO2A_LTR 12895 0.0133 (40/2997) 0 * Os_TE_809067 Os_TE_809065 Chr1 18194136 18194137 - COPI2_LTR 4733 0.0007 (2/2954) 0 * Os_TE_809064 Os_TE_809064 Chr1 18194132 18194131 + COPI2_LTR 4733 0.0007 (2/2950) 0 * Os_TE_809065 Os_TE_809053 Chr1 18186507 18186506 - ORSgTERT00201216 11284 0.0015 (4/2698) 0 * * Os_TE_809035 Chr1 18176433 18176432 + F1275 157 0.0010 (3/2984) 0 * * Os_TE_808992 Chr1 18150483 18150484 + ORSgTETNOOT00908 242 0.0013 (4/2969) 0 * * Os_TE_808973 Chr1 18145385 18145386 - GYPSY-A_LTR 8951 0.0132 (39/2957) 0 * Os_TE_808972 Os_TE_808972 Chr1 18145381 18145380 + GYPSY-A_LTR 8951 0.0135 (40/2965) 0 * Os_TE_808973 Os_TE_808947 Chr1 18138371 18138372 + TWIF 586 0.0003 (1/2872) 0 * Os_TE_808946 Os_TE_808946 Chr1 18138364 18138363 - ORSiTETNOOT00134 607 0.0003 (1/2873) 0 * Os_TE_808947 Os_TE_808897 Chr1 18124070 18124069 - TYPEM 227 0.0134 (40/2986) 0 * Os_TE_808896 Os_TE_808896 Chr1 18124069 18124070 - ORSgTEMT02400034 225 0.0131 (39/2982) 0 * Os_TE_808897 Os_TE_808861 Chr1 18112516 18112517 - RETRO2_LTR 12874 0.0010 (3/2993) 0 * Os_TE_808860 Os_TE_808860 Chr1 18112512 18112511 + RETRO2_LTR 12874 0.0010 (3/2994) 0 * Os_TE_808861 Os_TE_808787 Chr1 18075299 18075300 + OSTE33 1012 0.3709 (1077/2904) 0 * Os_TE_808786 Os_TE_808786 Chr1 18075290 18075289 + OSTE33 1012 0.3543 (1016/2868) 0 * Os_TE_808787 Os_TE_808774 Chr1 18072409 18072408 - TYPEM 227 0.2718 (739/2719) 0 * * Os_TE_808746 Chr1 18061366 18061365 - HELITRON2_OS 15167 0.1025 (307/2994) 0 * Os_TE_808745 Os_TE_808745 Chr1 18061365 18061366 + HELITRON2_OS 15167 0.1009 (302/2992) 0 * Os_TE_808746 Os_TE_808743 Chr1 18058665 18058666 - RETROFIT7_LTR 4788 0.0011 (3/2738) 0 * Os_TE_808742 Os_TE_808742 Chr1 18058661 18058660 + RETROFIT7_LTR 4788 0.0011 (3/2719) 0 * Os_TE_808743 Os_TE_808735 Chr1 18056084 18056085 - COPIA2-LTR_OS 6433 0.0138 (41/2966) 0 * Os_TE_808734 Os_TE_808734 Chr1 18056080 18056079 + COPIA2-LTR_OS 6433 0.0124 (37/2972) 0 * Os_TE_808735 Os_TE_808709 Chr1 18046563 18046562 + ORSgTETNOOT00908 242 0.0107 (32/2988) 0 * * Os_TE_808707 Chr1 18041589 18041590 - OLO24 345 0.0004 (1/2809) 0 * Os_TE_808706 Os_TE_808706 Chr1 18041587 18041586 + OLO24 345 0.0004 (1/2822) 0 * Os_TE_808707 Os_TE_808703 Chr1 18040845 18040844 - TRUNCATOR2_LTR 2904 0.0017 (5/2987) 0 * * Os_TE_808658 Chr1 18021346 18021903 + MuDR4_OS 7610 0.4006 (1028/2566) 1 Intact * Os_TE_808656 Chr1 18020435 18020201 + STOWAWAY21_OS 243 0.3945 (869/2203) 1 Intact * Os_TE_808645 Chr1 18017585 18017586 + RETRO2_LTR 12874 0.0010 (3/2971) 0 * Os_TE_808644 Os_TE_808644 Chr1 18017581 18017580 - RETRO1_LTR 8314 0.0010 (3/2982) 0 * Os_TE_808645 Os_TE_808642 Chr1 18017559 18017558 + MPING 430 0.0030 (9/2983) 0 * * Os_TE_808641 Chr1 18017439 18017438 - CENTRE 280 0.0003 (1/2950) 0 * * Os_TE_808636 Chr1 18016086 18016087 + TELIA 141 0.0003 (1/2993) 0 * Os_TE_808635 Os_TE_808635 Chr1 18016078 18016077 - TELIA 141 0.0003 (1/2994) 0 * Os_TE_808636 Os_TE_808624 Chr1 18013651 18013650 + ORSgTEMT00600272 361 0.0130 (39/2989) 0 * * Os_TE_808619 Chr1 18013106 18013105 + OSMU5 4881 0.0016 (4/2532) 0 * * Os_TE_808617 Chr1 18011895 18011894 - OSLINE1_1 4159 0.1475 (314/2129) 0 * * Os_TE_808574 Chr1 17999108 17999109 + ORSgTETNOOT00908 242 0.0111 (32/2882) 0 * * Os_TE_808573 Chr1 17999106 17999105 + ORSgTETNOOT00908 242 0.2436 (713/2927) 0 * * Os_TE_808557 Chr1 17989313 17989314 - MuDR4_OS 7610 0.0092 (27/2919) 0 * Os_TE_808556 Os_TE_808556 Chr1 17989307 17989306 - MuDR4_OS 7610 0.0099 (29/2930) 0 * Os_TE_808557 Os_TE_808552 Chr1 17988958 17988959 + TRUNCATOR 2918 0.2226 (663/2978) 0 * * Os_TE_808546 Chr1 17985524 17985525 + RETRO2A_LTR 12895 0.0017 (5/2936) 0 * Os_TE_808545 Os_TE_808545 Chr1 17985520 17985519 - RETRO1_LTR 8314 0.0020 (6/2930) 0 * Os_TE_808546 Os_TE_808521 Chr1 17982093 17982092 - SNAP-OL3 189 0.0003 (1/2970) 0 * * Os_TE_808511 Chr1 17977967 17977966 - STOWAWAY51_OS 246 0.0007 (2/2985) 0 * Os_TE_808510 Os_TE_808510 Chr1 17977961 17977962 + STOWAWAY51_OS 246 0.0007 (2/2986) 0 * Os_TE_808511 Os_TE_808509 Chr1 17977872 17977871 - STOWAWAY51_OS 246 0.0007 (2/2973) 0 * Os_TE_808508 Os_TE_808508 Chr1 17977866 17977867 + STOWAWAY51_OS 246 0.0007 (2/2969) 0 * Os_TE_808509 Os_TE_808496 Chr1 17971026 17971027 + RETROSAT2LTR 12796 0.1006 (301/2992) 0 * Os_TE_808495 Os_TE_808495 Chr1 17971024 17971023 - RETROSAT2LTR 12796 0.1052 (315/2993) 0 * Os_TE_808496 Os_TE_808484 Chr1 17968814 17968815 + TWIF 586 0.0003 (1/2968) 0 * Os_TE_808483 Os_TE_808483 Chr1 17968807 17968806 - ORSiTETNOOT00144 607 0.0003 (1/2971) 0 * Os_TE_808484 Os_TE_808436 Chr1 17949419 17949420 + RIRE2_LTR 11306 0.0107 (32/2983) 0 * Os_TE_808435 Os_TE_808435 Chr1 17949415 17949414 - RIRE2_LTR 11306 0.0101 (30/2982) 0 * Os_TE_808436 Os_TE_808409 Chr1 17934197 17934198 + SC-8_LTR 4951 0.0020 (6/2979) 0 * Os_TE_808408 Os_TE_808408 Chr1 17934193 17934192 - SC-8_LTR 4951 0.0020 (6/2980) 0 * Os_TE_808409 Os_TE_808406 Chr1 17933943 17933942 + ORSiTERTOOT00296 5553 0.0003 (1/2976) 0 * * Os_TE_808391 Chr1 17926159 17927247 + RETRO2_LTR 12874 0.2440 (724/2967) 1 Solo_LTR * Os_TE_808373 Chr1 17920312 17920313 + ORSgTETN00100092 209 0.0003 (1/2942) 0 * * Os_TE_808372 Chr1 17920015 17919656 + ORSgTEMT00600124 361 0.3476 (1007/2897) 1 Intact Os_TE_808371 Os_TE_808371 Chr1 17919652 17920012 + ORSgTEMT00600160 361 0.3563 (1043/2927) 1 Intact Os_TE_808372 Os_TE_808368 Chr1 17919418 17919417 + SZ-62LTR 3649 0.0228 (67/2934) 0 * * Os_TE_808348 Chr1 17917177 17917178 - ORSgTEMT02400179 221 0.0004 (1/2710) 0 * Os_TE_808347 Os_TE_808347 Chr1 17917176 17917175 - TYPEM 227 0.0004 (1/2712) 0 * Os_TE_808348 Os_TE_808326 Chr1 17913176 17913175 - MuDR4_OS 7610 0.1047 (312/2981) 0 * * Os_TE_808301 Chr1 17902296 17902295 - TRUNCATOR 2918 0.4273 (1248/2921) 0 * * Os_TE_808288 Chr1 17895849 17895850 - COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * * Os_TE_808276 Chr1 17891526 17891527 - RETROSAT2LTR 12796 0.0937 (280/2987) 0 * Os_TE_808275 Os_TE_808275 Chr1 17891524 17891523 + RETROSAT2LTR 12796 0.0927 (277/2988) 0 * Os_TE_808276 Os_TE_808273 Chr1 17889786 17889787 + RIRE3_LTR 12054 0.0127 (38/2995) 0 * Os_TE_808272 Os_TE_808272 Chr1 17889782 17889781 - RIRE3_LTR 12054 0.0124 (37/2995) 0 * Os_TE_808273 Os_TE_808271 Chr1 17888124 17888125 + RETRO2A_LTR 12895 0.0941 (281/2987) 0 * Os_TE_808270 Os_TE_808270 Chr1 17888120 17888119 - RETRO1_LTR 8314 0.0929 (278/2994) 0 * Os_TE_808271 Os_TE_808226 Chr1 17866854 17866853 + RIREX_LTR 8828 0.0003 (1/2987) 0 * * Os_TE_808216 Chr1 17863161 17863160 + STOWAWAY51_OS 246 0.0020 (6/2982) 0 * * Os_TE_808208 Chr1 17859542 17859543 + COPIA2-LTR_OS 6433 0.0010 (3/2997) 0 * Os_TE_808207 Os_TE_808207 Chr1 17859538 17859537 - COPIA2-LTR_OS 6433 0.0010 (3/2998) 0 * Os_TE_808208 Os_TE_808206 Chr1 17859361 17859362 + COPIA2-LTR_OS 6433 0.0077 (23/2999) 0 * Os_TE_808205 Os_TE_808205 Chr1 17859357 17859356 - COPIA2-LTR_OS 6433 0.0077 (23/2999) 0 * Os_TE_808206 Os_TE_808134 Chr1 17835980 17835981 + RIREX_LTR 8828 0.0839 (248/2955) 0 * Os_TE_808133 Os_TE_808133 Chr1 17835976 17835975 - RIREX_LTR 8828 0.0834 (249/2986) 0 * Os_TE_808134 Os_TE_808029 Chr1 17804525 17804524 - TRUNCATOR 2918 0.2782 (827/2973) 0 * * Os_TE_808027 Chr1 17804064 17804063 - COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * * Os_TE_808001 Chr1 17797399 17797400 + ORSiTERTOOT00332 5395 0.0017 (5/2987) 0 * * Os_TE_807995 Chr1 17794882 17794883 - RIRE3_LTR 12054 0.0003 (1/2982) 0 * Os_TE_807994 Os_TE_807994 Chr1 17794878 17794877 + RIRE3_LTR 12054 0.0003 (1/2991) 0 * Os_TE_807995 Os_TE_807947 Chr1 17782789 17782790 - RIRE3_LTR 12054 0.4896 (1038/2120) 0 * * Os_TE_807917 Chr1 17767988 17767989 + COPIA2-LTR_OS 6433 0.0003 (1/2981) 0 * * Os_TE_807913 Chr1 17767393 17767394 + RIREX_LTR 8828 0.0007 (2/2836) 0 * Os_TE_807912 Os_TE_807912 Chr1 17767389 17767388 - RIREX_LTR 8828 0.0007 (2/2852) 0 * Os_TE_807913 Os_TE_807897 Chr1 17763078 17763077 - OSTE33 1012 0.0017 (5/2948) 0 * * Os_TE_807877 Chr1 17756114 17756115 - MERMITED 1572 0.0013 (4/2964) 0 * Os_TE_807876 Os_TE_807876 Chr1 17756112 17756111 - MERMITED 1572 0.0017 (5/2979) 0 * Os_TE_807877 Os_TE_807870 Chr1 17753788 17753789 + ORSgTEMT01601122 212 0.0004 (1/2514) 0 * * Os_TE_807775 Chr1 17723330 17723329 + ORSgTETNOOT00012 241 0.6442 (1796/2788) 0 * * Os_TE_807743 Chr1 17712414 17712415 + ORSiTERTOOT00296 5553 0.0010 (3/2997) 0 * Os_TE_807742 Os_TE_807742 Chr1 17712410 17712409 - SC-3_LTR 5748 0.0010 (3/2999) 0 * Os_TE_807743 Os_TE_807734 Chr1 17707144 17707043 + OSTE18 129 0.3519 (1054/2995) 1 Intact Os_TE_807733 Os_TE_807733 Chr1 17707043 17707144 - OSTE18 129 0.3380 (998/2953) 1 Intact Os_TE_807734 Os_TE_807731 Chr1 17705442 17699918 + ORSiTERTOOT00329 5144 0.3431 (1014/2955) 1 Intact Os_TE_807729 Os_TE_807729 Chr1 17699918 17705442 - ORSiTERTOOT00329 5144 0.3557 (1059/2977) 1 Intact Os_TE_807731 Os_TE_807712 Chr1 17696002 17696003 + RIREX_LTR 8828 0.0063 (19/2995) 0 * * Os_TE_807680 Chr1 17682331 17682332 + COPI2_LTR 4733 0.0003 (1/2992) 0 * Os_TE_807679 Os_TE_807679 Chr1 17682327 17682326 - COPI2_LTR 4733 0.0003 (1/2992) 0 * Os_TE_807680 Os_TE_807676 Chr1 17681409 17681410 + MPING 430 0.0003 (1/2894) 0 * Os_TE_807675 Os_TE_807675 Chr1 17681407 17681406 - MPING 430 0.0003 (1/2950) 0 * Os_TE_807676 Os_TE_807674 Chr1 17681209 17681210 - RIREX_LTR 8828 0.0064 (19/2960) 0 * Os_TE_807673 Os_TE_807673 Chr1 17681205 17681204 + RIREX_LTR 8828 0.0064 (19/2968) 0 * Os_TE_807674 Os_TE_807613 Chr1 17663156 17663155 + COPIA2-LTR_OS 6433 0.0003 (1/2974) 0 * * Os_TE_807574 Chr1 17657597 17657598 + OLO24 345 0.0113 (32/2844) 0 * Os_TE_807573 Os_TE_807573 Chr1 17657595 17657594 - OLO24 345 0.0109 (31/2857) 0 * Os_TE_807574 Os_TE_807521 Chr1 17625082 17625083 + SC-8_LTR 4951 0.0017 (5/2904) 0 * Os_TE_807520 Os_TE_807520 Chr1 17625078 17625077 - SC-8_LTR 4951 0.0017 (5/2921) 0 * Os_TE_807521 Os_TE_807493 Chr1 17615145 17615144 + TELIA 141 0.0003 (1/2980) 0 * * Os_TE_807477 Chr1 17603884 17603883 + ORSiTERTOOT00226 792 0.0003 (1/2963) 0 * * Os_TE_807473 Chr1 17601947 17601946 + SZ-22_LTR 4403 0.0003 (1/2984) 0 * * Os_TE_807442 Chr1 17591080 17591079 + RIRE3_LTR 12054 0.1015 (304/2994) 0 * * Os_TE_807413 Chr1 17583465 17583464 - MuDR3_OS 8604 0.0238 (71/2986) 0 * * Os_TE_807412 Chr1 17583451 17583452 + TWIF 586 0.0003 (1/2976) 0 * * Os_TE_807381 Chr1 17569395 17569394 - ORSgTERT00201216 11284 0.0061 (18/2971) 0 * * Os_TE_807256 Chr1 17514263 17513834 + MPING 430 0.0207 (61/2951) 1 Intact Os_TE_807255 Os_TE_807255 Chr1 17513834 17514263 - MPING 430 0.0204 (59/2889) 1 Intact Os_TE_807256 Os_TE_807236 Chr1 17512144 17512145 - RIREX_LTR 8828 0.0003 (1/2986) 0 * * Os_TE_807234 Chr1 17512035 17512036 - COPIA2-LTR_OS 6433 0.0007 (2/2998) 0 * Os_TE_807233 Os_TE_807233 Chr1 17512031 17512030 + COPIA2-LTR_OS 6433 0.0007 (2/2997) 0 * Os_TE_807234 Os_TE_807218 Chr1 17503960 17503959 + ORSgTEMT00300063 413 0.1972 (589/2987) 0 * * Os_TE_807217 Chr1 17503810 17503811 + ORSiTEMT00300001 383 0.5219 (1524/2920) 0 * Os_TE_807216 Os_TE_807216 Chr1 17503809 17503808 + ORSgTEMT00300093 396 0.4235 (1022/2413) 0 * Os_TE_807217 Os_TE_807187 Chr1 17493486 17493487 - CASTAWAY 364 0.0013 (4/2976) 0 * Os_TE_807186 Os_TE_807186 Chr1 17493483 17493482 - ORSgTEMT00600304 361 0.0013 (4/2980) 0 * Os_TE_807187 Os_TE_807161 Chr1 17483677 17483678 - RIREX_LTR 8828 0.0060 (18/2995) 0 * Os_TE_807160 Os_TE_807160 Chr1 17483673 17483672 + RIREX_LTR 8828 0.0063 (19/2997) 0 * Os_TE_807161 Os_TE_807130 Chr1 17479057 17479056 - ORSiTERTOOT00086 525 0.0015 (4/2605) 0 * * Os_TE_807076 Chr1 17462134 17462135 - SZ-22_LTR 4403 0.0003 (1/2986) 0 * Os_TE_807075 Os_TE_807075 Chr1 17462130 17462129 + ORSiTERTOOT00226 792 0.0003 (1/2985) 0 * Os_TE_807076 Os_TE_807067 Chr1 17455804 17455805 - COPI2_LTR 4733 0.0003 (1/2973) 0 * * Os_TE_807065 Chr1 17455470 17455471 + COPI2_LTR 4733 0.0003 (1/2949) 0 * Os_TE_807064 Os_TE_807064 Chr1 17455466 17455465 - COPI2_LTR 4733 0.0003 (1/2937) 0 * Os_TE_807065 Os_TE_807050 Chr1 17449542 17448621 + ORSiTETNOOT00107 906 0.3538 (1059/2993) 1 Intact Os_TE_807049 Os_TE_807049 Chr1 17448618 17449539 - ORSiTETNOOT00107 906 0.3492 (1043/2987) 1 Intact Os_TE_807050 Os_TE_807033 Chr1 17444014 17444015 + RIREX_LTR 8828 0.0020 (6/2966) 0 * Os_TE_807032 Os_TE_807032 Chr1 17444010 17444009 - RIREX_LTR 8828 0.0020 (6/2969) 0 * Os_TE_807033 Os_TE_807029 Chr1 17442715 17436255 + COPIA2-LTR_OS 6433 0.2581 (770/2983) 1 Intact Os_TE_807028 Os_TE_807028 Chr1 17436255 17442715 - COPIA2-LTR_OS 6433 0.2680 (803/2996) 1 Intact Os_TE_807029 Os_TE_807025 Chr1 17434248 17434249 - ORSgTEMT02400179 221 0.0065 (19/2945) 0 * Os_TE_807024 Os_TE_807024 Chr1 17434247 17434246 - TYPEM 227 0.0058 (17/2947) 0 * Os_TE_807025 Os_TE_806998 Chr1 17429692 17429691 - ORSiTETNOOT00134 607 0.0004 (1/2826) 0 * * Os_TE_806944 Chr1 17404929 17404928 - ORSiTERTOOT00086 525 0.0010 (3/2988) 0 * * Os_TE_806934 Chr1 17400811 17400812 + OSTE19 162 0.0017 (5/2976) 0 * * Os_TE_806917 Chr1 17392695 17392696 - SZ-22_LTR 4403 0.0003 (1/2996) 0 * Os_TE_806916 Os_TE_806916 Chr1 17392691 17392690 + ORSiTERTOOT00226 792 0.0003 (1/2997) 0 * Os_TE_806917 Os_TE_806905 Chr1 17388867 17388868 - OSTE14 885 0.0007 (2/2897) 0 * * Os_TE_806895 Chr1 17382212 17382213 - RIRE2_LTR 11306 0.0060 (18/2992) 0 * * Os_TE_806870 Chr1 17373732 17369796 + RIRE3_LTR 12054 0.3485 (1039/2981) 1 Intact * Os_TE_806810 Chr1 17353845 17353846 - RIRE2_LTR 11306 0.0104 (31/2990) 0 * Os_TE_806809 Os_TE_806809 Chr1 17353841 17353840 - ORSgTERT00201216 11284 0.0100 (30/2994) 0 * Os_TE_806810 Os_TE_806799 Chr1 17350778 17350779 + COPIA2-LTR_OS 6433 0.0351 (105/2995) 0 * Os_TE_806798 Os_TE_806798 Chr1 17350774 17350773 - COPIA2-LTR_OS 6433 0.0350 (105/2998) 0 * Os_TE_806799 Os_TE_806771 Chr1 17340669 17340670 - CRM-LTR_OS 7749 0.0022 (6/2783) 0 * Os_TE_806770 Os_TE_806770 Chr1 17340665 17340664 + CRM-LTR_OS 7749 0.0018 (5/2785) 0 * Os_TE_806771 Os_TE_806755 Chr1 17334949 17334950 + ORSiTERTOOT00226 792 0.0007 (2/2825) 0 * * Os_TE_806732 Chr1 17320380 17320381 + SC-8_LTR 4951 0.0003 (1/2959) 0 * Os_TE_806731 Os_TE_806731 Chr1 17320376 17320375 - SC-8_LTR 4951 0.0003 (1/2899) 0 * Os_TE_806732 Os_TE_806728 Chr1 17319153 17319152 + STOWAWAY51_OS 246 0.0003 (1/2992) 0 * * Os_TE_806708 Chr1 17307974 17307975 - SZ-22_LTR 4403 0.0020 (6/2993) 0 * * Os_TE_806688 Chr1 17299680 17299679 - COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * * Os_TE_806687 Chr1 17299554 17299555 - RIREX_LTR 8828 0.0127 (38/2997) 0 * Os_TE_806686 Os_TE_806686 Chr1 17299550 17299549 + RIREX_LTR 8828 0.0120 (36/2994) 0 * Os_TE_806687 Os_TE_806610 Chr1 17276511 17276510 + ORSiTERTOOT00296 5553 0.0003 (1/2988) 0 * * Os_TE_806604 Chr1 17272953 17272954 - ORSgTETNOOT02565 240 0.0134 (40/2978) 0 * Os_TE_806603 Os_TE_806603 Chr1 17272950 17272949 + ORSgTETNOOT01642 241 0.0131 (39/2978) 0 * Os_TE_806604 Os_TE_806600 Chr1 17270090 17270091 + ORSiTERTOOT00296 5553 0.0003 (1/2975) 0 * Os_TE_806599 Os_TE_806599 Chr1 17270086 17270085 - SC-3_LTR 5748 0.0003 (1/2981) 0 * Os_TE_806600 Os_TE_806507 Chr1 17221807 17221808 + ORSiTERTOOT00226 792 0.0003 (1/2992) 0 * Os_TE_806506 Os_TE_806506 Chr1 17221803 17221802 - SZ-22_LTR 4403 0.0003 (1/2996) 0 * Os_TE_806507 Os_TE_806490 Chr1 17213948 17213947 - SC-8_LTR 4951 0.0003 (1/2988) 0 * * Os_TE_806357 Chr1 17162373 17162032 - NDNA1TNA_OS 334 0.3347 (990/2958) 1 Intact Os_TE_806356 Os_TE_806356 Chr1 17162030 17162366 + ORSgTEMT00101341 314 0.3475 (1039/2990) 1 Intact Os_TE_806357 Os_TE_806355 Chr1 17159104 17159105 - TRUNCATOR2_LTR 2904 0.3489 (591/1694) -1 * * Os_TE_806325 Chr1 17152361 17152362 + RIREX_LTR 8828 0.0003 (1/2987) 0 * Os_TE_806324 Os_TE_806324 Chr1 17152357 17152356 - RIREX_LTR 8828 0.0003 (1/2982) 0 * Os_TE_806325 Os_TE_806154 Chr1 17104300 17104301 + RIRE3_LTR 12054 0.1026 (299/2914) 0 * * Os_TE_806021 Chr1 17065311 17065312 + RIREX_LTR 8828 0.0007 (2/2992) 0 * Os_TE_806020 Os_TE_806020 Chr1 17065307 17065306 - RIREX_LTR 8828 0.0007 (2/2991) 0 * Os_TE_806021 Os_TE_806017 Chr1 17064287 17051366 + RIRE3_LTR 12054 0.3200 (762/2381) 1 Intact * Os_TE_805890 Chr1 17020829 17020830 + ORSiTERTOOT00034 791 0.0010 (3/2946) 0 * * Os_TE_805858 Chr1 17011295 17011294 + ORSiTERTOOT00027 10853 0.0003 (1/2991) 0 * * Os_TE_805853 Chr1 17011099 17011098 + TRUNCATOR 2918 0.6376 (1907/2991) 0 * * Os_TE_805248 Chr1 16733009 16733010 - COPIA2-LTR_OS 6433 0.0017 (5/2977) 0 * * Os_TE_805246 Chr1 16732706 16732707 + ORSiTERTOOT00296 5553 0.0003 (1/2978) 0 * Os_TE_805245 Os_TE_805245 Chr1 16732702 16732701 - SC-3_LTR 5748 0.0003 (1/2977) 0 * Os_TE_805246 Os_TE_805244 Chr1 16731936 16731937 - RIREX_LTR 8828 0.0003 (1/2988) 0 * Os_TE_805243 Os_TE_805243 Chr1 16731932 16731931 + RIREX_LTR 8828 0.0003 (1/2988) 0 * Os_TE_805244 Os_TE_805240 Chr1 16729708 16729709 - OSLINE1-2 7128 0.0101 (30/2975) 0 * * Os_TE_805228 Chr1 16721175 16721176 + COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * * Os_TE_805224 Chr1 16716104 16716105 - RIREX_LTR 8828 0.0060 (18/2990) 0 * Os_TE_805223 Os_TE_805223 Chr1 16716100 16716099 + RIREX_LTR 8828 0.0064 (19/2989) 0 * Os_TE_805224 Os_TE_805218 Chr1 16713824 16713823 + STOWAWAY8_OS 259 0.0003 (1/2982) 0 * * Os_TE_805177 Chr1 16696217 16696218 + ORSiTERTOOT00226 792 0.0003 (1/2991) 0 * * Os_TE_805159 Chr1 16686258 16686257 - UNIQUE 158 0.0003 (1/2967) 0 * * Os_TE_805150 Chr1 16679853 16679854 + RIREX_LTR 8828 0.0003 (1/2989) 0 * * Os_TE_805045 Chr1 16635375 16635376 + RIREX_LTR 8828 0.1073 (319/2972) 0 * Os_TE_805044 Os_TE_805044 Chr1 16635371 16635370 - RIRE2_LTR 11306 0.1004 (298/2967) 0 * Os_TE_805045 Os_TE_804992 Chr1 16607095 16607094 - CRM-LTR_OS 7749 0.1039 (311/2992) 0 * * Os_TE_804864 Chr1 16540540 16540541 - RIREX_LTR 8828 0.0003 (1/2936) 0 * * Os_TE_804781 Chr1 16522607 16522606 - ORSgTEMT01600550 229 0.0004 (1/2699) 0 * * Os_TE_804769 Chr1 16518264 16518265 + COPIA2-LTR_OS 6433 0.0067 (20/2995) 0 * Os_TE_804768 Os_TE_804768 Chr1 16518260 16518259 - COPIA2-LTR_OS 6433 0.0067 (20/2993) 0 * Os_TE_804769 Os_TE_804765 Chr1 16516367 16516368 + ORSiTERTOOT00296 5553 0.0003 (1/2937) 0 * Os_TE_804764 Os_TE_804764 Chr1 16516363 16516362 - SC-3_LTR 5748 0.0003 (1/2951) 0 * Os_TE_804765 Os_TE_804758 Chr1 16514452 16514451 - SC-8_LTR 4951 0.0007 (2/2975) 0 * * Os_TE_804755 Chr1 16513365 16513366 + ORSiTERTOOT00226 792 0.0003 (1/2988) 0 * * Os_TE_804743 Chr1 16509542 16509543 - SZ-22_LTR 4403 0.0017 (5/2924) 0 * Os_TE_804742 Os_TE_804742 Chr1 16509538 16509537 + ORSiTERTOOT00226 792 0.0021 (6/2920) 0 * Os_TE_804743 Os_TE_804704 Chr1 16486206 16486207 - SZ-22_LTR 4403 0.0003 (1/2994) 0 * Os_TE_804703 Os_TE_804703 Chr1 16486202 16486201 + ORSiTERTOOT00226 792 0.0003 (1/2996) 0 * Os_TE_804704 Os_TE_804702 Chr1 16486098 16486099 + SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_804701 Os_TE_804701 Chr1 16486094 16486093 - SC-8_LTR 4951 0.0003 (1/2996) 0 * Os_TE_804702 Os_TE_804691 Chr1 16479820 16479821 - BUHUI 375 0.0010 (3/2994) 0 * Os_TE_804690 Os_TE_804690 Chr1 16479818 16479817 + BUHUI 375 0.0017 (5/2994) 0 * Os_TE_804691 Os_TE_804647 Chr1 16456302 16456301 + TRUNCATOR 2918 0.0007 (2/2978) 0 * * Os_TE_804633 Chr1 16451066 16451067 + COPIA2-LTR_OS 6433 0.0011 (3/2823) 0 * * Os_TE_804620 Chr1 16446542 16446543 - RIRE2_LTR 11306 0.0108 (32/2964) 0 * Os_TE_804619 Os_TE_804619 Chr1 16446538 16446537 - ORSgTERT00201216 11284 0.0101 (30/2961) 0 * Os_TE_804620 Os_TE_804552 Chr1 16415791 16415790 - SZ-22_LTR 4403 0.0003 (1/2997) 0 * * Os_TE_804545 Chr1 16412134 16412133 + RIRE3_LTR 12054 0.0092 (19/2061) 0 * * Os_TE_804509 Chr1 16397083 16397084 + ORSiTERTOOT00226 792 0.0003 (1/2998) 0 * * Os_TE_804506 Chr1 16394571 16394570 - SZ-22_LTR 4403 0.0003 (1/2989) 0 * * Os_TE_804334 Chr1 16325713 16325712 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * * Os_TE_804331 Chr1 16325343 16325344 - ORSiTERTOOT00332 5395 0.0003 (1/2999) 0 * Os_TE_804330 Os_TE_804330 Chr1 16325339 16325338 + ORSiTERTOOT00332 5395 0.0003 (1/2999) 0 * Os_TE_804331 Os_TE_804329 Chr1 16325006 16325007 + ORSiTERTOOT00226 792 0.0003 (1/2997) 0 * Os_TE_804328 Os_TE_804328 Chr1 16325002 16325001 + ORSiTERTOOT00226 792 0.0003 (1/2998) 0 * Os_TE_804329 Os_TE_804304 Chr1 16320173 16320172 - SZ-22_LTR 4403 0.0005 (1/1977) 0 * * Os_TE_804286 Chr1 16313516 16313515 - RIRE3_LTR 12054 0.0107 (32/2995) 0 * * Os_TE_804246 Chr1 16290935 16290934 + ORSiTERTOOT00226 792 0.1148 (264/2299) 0 * * Os_TE_804207 Chr1 16279930 16279931 + TRUNCATOR2_LTR 2904 0.0034 (10/2945) 0 * * Os_TE_804144 Chr1 16251713 16251712 - SZ-40LTR 2465 0.0019 (2/1058) 0 * * Os_TE_804076 Chr1 16234617 16234616 - OSTE24 683 0.0063 (17/2708) 0 * * Os_TE_804025 Chr1 16206420 16206419 - SZ-67LTR 1540 0.6448 (1899/2945) 0 * * Os_TE_804008 Chr1 16200230 16200229 - ORSgTEMT03600118 431 0.0004 (1/2667) 0 * * Os_TE_803980 Chr1 16187759 16187758 - RIRE2_LTR 11306 0.0107 (32/2987) 0 * * Os_TE_803968 Chr1 16186436 16186435 - STOWAWAY51_OS 246 0.0003 (1/2984) 0 * * Os_TE_803879 Chr1 16134631 16134632 + RETRO2_LTR 12874 0.6365 (1903/2990) 0 * Os_TE_803878 Os_TE_803878 Chr1 16134627 16134626 - RETRO2_LTR 12874 0.6350 (1896/2986) 0 * Os_TE_803879 Os_TE_803857 Chr1 16126426 16126425 + SINE03_OS 360 0.0137 (40/2923) 0 * * Os_TE_803799 Chr1 16098247 16098248 + RIREX_LTR 8828 0.5372 (1603/2984) 0 * Os_TE_803798 Os_TE_803798 Chr1 16098244 16098243 - RIREX_LTR 8828 0.5328 (1582/2969) 0 * Os_TE_803799 Os_TE_803789 Chr1 16095335 16095336 + ORSiTERTOOT00226 792 0.0003 (1/2920) 0 * * Os_TE_803787 Chr1 16095239 16089127 - OSTE33 1012 0.3472 (1020/2938) 1 Intact * Os_TE_803770 Chr1 16081876 16080444 - MDR2 6967 0.3512 (1042/2967) 1 Intact * Os_TE_803725 Chr1 16063828 16063829 + ORSiTERTOOT00381 4988 0.0010 (3/2991) 0 * Os_TE_803724 Os_TE_803724 Chr1 16063824 16063823 - SC-8_LTR 4951 0.0010 (3/2990) 0 * Os_TE_803725 Os_TE_803702 Chr1 16057570 16057571 - ORSiTERT00200154 9386 0.0027 (3/1121) 0 * * Os_TE_803698 Chr1 16057318 16057319 + COPIA2-LTR_OS 6433 0.0007 (1/1427) 0 * * Os_TE_803687 Chr1 16046654 16046655 - NDNA1TNA_OS 334 0.0020 (6/2949) 0 * * Os_TE_803667 Chr1 16038488 16038768 + ORSgTEMT05200068 281 0.3689 (1103/2990) 1 Intact * Os_TE_803648 Chr1 16027408 16027409 + SZ-9LTR 965 0.1064 (312/2932) 0 * Os_TE_803647 Os_TE_803647 Chr1 16027404 16027403 - SZ-9LTR 965 0.1077 (317/2942) 0 * Os_TE_803648 Os_TE_803637 Chr1 16021765 16024876 - SZ-47LTR 3144 0.3769 (1118/2966) 1 Intact * Os_TE_803635 Chr1 16021209 16020919 - STOWAWAY11_OS 292 0.3747 (1114/2973) 1 Intact * Os_TE_803629 Chr1 16020261 16020260 + TRUNCATOR 2918 0.0017 (5/2975) 0 * * Os_TE_803621 Chr1 16016705 16016706 + RIRE3_LTR 12054 0.0274 (31/1133) 0 * * Os_TE_803615 Chr1 16002584 16002585 + COPIA2-LTR_OS 6433 0.0070 (8/1145) 0 * Os_TE_803614 Os_TE_803614 Chr1 16002580 16002579 - COPIA2-LTR_OS 6433 0.0079 (9/1142) 0 * Os_TE_803615 Os_TE_803589 Chr1 15981696 15981697 + GYPSY-B_LTR 7068 0.6515 (1920/2947) 0 * Os_TE_803588 Os_TE_803588 Chr1 15981692 15981691 - GYPSY1-LTR_OS 8900 0.6532 (1923/2944) 0 * Os_TE_803589 Os_TE_803562 Chr1 15970996 15970995 + AMYLTP 383 0.0018 (2/1084) 0 * * Os_TE_803544 Chr1 15963896 15965199 + SZ-45LTR 2474 0.4068 (1139/2800) 1 Intact * Os_TE_803536 Chr1 15959794 15959793 + ORSgTEMT00500498 155 0.6310 (1869/2962) 0 * * Os_TE_803532 Chr1 15959674 15959673 + ORSgTEMT00501629 149 0.6303 (1867/2962) 0 * * Os_TE_803514 Chr1 15954626 15954627 - F1275 157 0.0012 (3/2539) 0 * Os_TE_803513 Os_TE_803513 Chr1 15954624 15954623 + F1275 157 0.0012 (3/2539) 0 * Os_TE_803514 Os_TE_803491 Chr1 15948348 15948347 - TRUNCATOR 2918 0.1718 (420/2445) 0 * * Os_TE_803486 Chr1 15947491 15941829 + ORSiCMCM00100017 5674 0.4239 (1130/2666) 1 Intact Os_TE_803484 Os_TE_803484 Chr1 15941829 15947491 - SZ-36LTR 5825 0.4245 (1127/2655) 1 Intact Os_TE_803486 Os_TE_803461 Chr1 15935021 15935020 - ORSgTETN00200001 10994 0.0003 (1/2989) 0 * * Os_TE_803458 Chr1 15934624 15934625 + COPIA2-LTR_OS 6433 0.0007 (2/2987) 0 * Os_TE_803457 Os_TE_803457 Chr1 15934620 15934619 - COPIA2-LTR_OS 6433 0.0007 (2/2989) 0 * Os_TE_803458 Os_TE_803456 Chr1 15933953 15933952 + ORSgTEMT01601122 212 0.6200 (1738/2803) 0 * * Os_TE_803391 Chr1 15902943 15899571 - TRUNCATOR2_LTR 2904 0.3988 (1056/2648) 1 Intact Os_TE_803384 Os_TE_803384 Chr1 15899571 15902941 + ORSiCMCM00100019 2717 0.3709 (904/2437) 1 Intact Os_TE_803391 Os_TE_803342 Chr1 15877967 15877966 - TRUNCATOR 2918 0.5244 (1550/2956) 0 * Os_TE_803341 Os_TE_803341 Chr1 15877966 15877967 + TRUNCATOR 2918 0.5282 (1565/2963) 0 * Os_TE_803342 Os_TE_803297 Chr1 15854959 15854960 + Mudr5_OS 5952 0.6472 (1838/2840) 0 * * Os_TE_803286 Chr1 15849027 15849026 + SZ-22_LTR 4403 0.0003 (1/2926) 0 * * Os_TE_803281 Chr1 15846745 15846746 + COPIA2-LTR_OS 6433 0.0006 (1/1718) 0 * * Os_TE_803276 Chr1 15843369 15843370 - ORSgTERT00201216 11284 0.6292 (1795/2853) 0 * * Os_TE_803263 Chr1 15836274 15836275 + COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * Os_TE_803262 Os_TE_803262 Chr1 15836270 15836269 - COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * Os_TE_803263 Os_TE_803250 Chr1 15830731 15830732 - RIRE3_LTR 12054 0.0932 (278/2983) 0 * * Os_TE_803242 Chr1 15828164 15826540 + TRUNCATOR 2918 0.3547 (1061/2991) 1 Intact Os_TE_803241 Os_TE_803241 Chr1 15826535 15828164 - TRUNCATOR 2918 0.3473 (1036/2983) 1 Intact Os_TE_803242 Os_TE_803236 Chr1 15824629 15824630 + ORSiCMCM00100019 2717 0.0007 (2/2994) 0 * * Os_TE_803220 Chr1 15813621 15813620 - ORSgTETNOOT00908 242 0.6341 (1896/2990) 0 * * Os_TE_803214 Chr1 15811095 15811096 - RIRE3A_LTR 10580 0.0007 (2/2872) 0 * * Os_TE_803208 Chr1 15809062 15807970 + CACTA-H 1152 0.3510 (1046/2980) 1 Intact Os_TE_803206 Os_TE_803206 Chr1 15807970 15809062 - CACTA-H 1152 0.3514 (1046/2977) 1 Intact Os_TE_803208 Os_TE_803205 Chr1 15806259 15806260 + ORSgTETNOOT00908 242 0.0064 (19/2962) 0 * Os_TE_803204 Os_TE_803204 Chr1 15806253 15806252 + ORSgTETNOOT01219 231 0.0057 (17/2964) 0 * Os_TE_803205 Os_TE_803185 Chr1 15783108 15783107 - AMYLTP 383 0.0044 (7/1601) 0 * * Os_TE_803165 Chr1 15767385 15767384 + RIRE3A_LTR 10580 0.0016 (2/1288) 0 * * Os_TE_803158 Chr1 15765537 15765329 - ORSgTEMT01400022 212 0.3491 (1005/2879) 1 Intact Os_TE_803156 Os_TE_803156 Chr1 15765295 15765536 + ORSgTEMT01400003 213 0.3675 (1071/2914) 1 Intact Os_TE_803158 Os_TE_803150 Chr1 15764949 15764950 + MPING 430 0.0026 (3/1150) 0 * * Os_TE_803124 Chr1 15734759 15734760 - RIREX_LTR 8828 0.0007 (2/2721) 0 * * Os_TE_803109 Chr1 15716949 15717741 - SZ-22_LTR 4403 0.3465 (959/2768) 1 Solo_LTR * Os_TE_803065 Chr1 15695199 15714201 + SPMLIKE 10989 0.3978 (1134/2851) 1 Intact * Os_TE_803064 Chr1 15693923 15693924 - RIREX_LTR 8828 0.0003 (1/2943) 0 * Os_TE_803063 Os_TE_803063 Chr1 15693919 15693918 + RIREX_LTR 8828 0.0003 (1/2938) 0 * Os_TE_803064 Os_TE_803057 Chr1 15690716 15690717 - SZ-22_LTR 4403 0.0010 (3/2957) 0 * Os_TE_803056 Os_TE_803056 Chr1 15690712 15690711 + ORSiTERTOOT00226 792 0.0010 (3/2961) 0 * Os_TE_803057 Os_TE_803037 Chr1 15679203 15679204 - ORSgTEMT01800062 435 0.6410 (1889/2947) 0 * Os_TE_803036 Os_TE_803036 Chr1 15679202 15679201 - ORSgTEMT01800062 435 0.6318 (1834/2903) 0 * Os_TE_803037 Os_TE_803024 Chr1 15676522 15676523 - COPI2_LTR 4733 0.0007 (2/2984) 0 * Os_TE_803023 Os_TE_803023 Chr1 15676518 15676517 + COPI2_LTR 4733 0.0007 (2/2971) 0 * Os_TE_803024 Os_TE_803016 Chr1 15675801 15675800 - ORSgTEMT01600578 239 0.0004 (1/2820) 0 * * Os_TE_802831 Chr1 15560535 15560536 + ORSgTEMT01601591 242 0.0004 (1/2749) 0 * * Os_TE_802793 Chr1 15546188 15546187 - ORSgTEMT00900965 216 0.0003 (1/2921) 0 * * Os_TE_802764 Chr1 15534599 15534600 + SZ-30_LTR 6377 0.0003 (1/2973) 0 * * Os_TE_802670 Chr1 15492157 15492156 - SC-8_LTR 4951 0.0013 (4/2993) 0 * * Os_TE_802658 Chr1 15488606 15488607 + ORSgTETN00100092 209 0.0003 (1/2942) 0 * * Os_TE_802657 Chr1 15488555 15488556 + ORSiTERTOOT00296 5553 0.6475 (1925/2973) 0 * Os_TE_802656 Os_TE_802656 Chr1 15488551 15488550 - SC-3_LTR 5748 0.6465 (1915/2962) 0 * Os_TE_802657 Os_TE_802627 Chr1 15472804 15472717 - ORSgTEMT01701696 106 0.3667 (1093/2981) 1 Intact * Os_TE_802623 Chr1 15471938 15469828 + SEVERIN-2 1952 0.3624 (1078/2975) 1 Intact * Os_TE_802609 Chr1 15467862 15467863 + RIRE3_LTR 12054 0.0020 (6/2968) 0 * * Os_TE_802597 Chr1 15455960 15455961 + ORSiTERTOOT00296 5553 0.0027 (8/2990) 0 * Os_TE_802596 Os_TE_802596 Chr1 15455956 15455955 - SC-3_LTR 5748 0.0023 (7/2994) 0 * Os_TE_802597 Os_TE_802592 Chr1 15453324 15453556 - ORSgTETNOOT00355 222 0.3584 (1043/2910) 1 Intact * Os_TE_802591 Chr1 15452634 15452635 - COPIA2-LTR_OS 6433 0.0003 (1/2975) 0 * Os_TE_802590 Os_TE_802590 Chr1 15452630 15452629 + COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * Os_TE_802591 Os_TE_802588 Chr1 15452400 15452401 + ORSgTEMT00900288 216 0.6427 (1910/2972) 0 * Os_TE_802587 Os_TE_802587 Chr1 15452399 15452398 - ORSgTEMT00900965 216 0.6453 (1927/2986) 0 * Os_TE_802588 Os_TE_802582 Chr1 15450502 15450503 - NDNA1TNA_OS 334 0.4749 (1418/2986) 0 * Os_TE_802581 Os_TE_802581 Chr1 15450501 15450500 + NDNA1TNA_OS 334 0.4769 (1425/2988) 0 * Os_TE_802582 Os_TE_802560 Chr1 15439248 15439249 - ORSiTERT00100062 5674 0.0017 (5/2996) 0 * Os_TE_802559 Os_TE_802559 Chr1 15439244 15439243 + OSTONOR1_LTR 6440 0.0020 (6/2993) 0 * Os_TE_802560 Os_TE_802518 Chr1 15423754 15423753 + OSMU5 4881 0.0003 (1/2992) 0 * * Os_TE_802489 Chr1 15406862 15406863 + RETROSAT4_LTR 13504 0.0003 (1/2927) 0 * Os_TE_802488 Os_TE_802488 Chr1 15406858 15406857 - SZ-35LTR 3853 0.0003 (1/2934) 0 * Os_TE_802489 Os_TE_802478 Chr1 15402859 15402860 - STOLAB 312 0.0357 (102/2856) 0 * Os_TE_802477 Os_TE_802477 Chr1 15402857 15402856 + STOLAB 312 0.0362 (103/2846) 0 * Os_TE_802478 Os_TE_802475 Chr1 15402575 15402576 - TNR2A 152 0.0004 (1/2815) 0 * * Os_TE_802458 Chr1 15392853 15392617 - ORSgTEMT01601208 238 0.3226 (951/2948) 1 Intact Os_TE_802456 Os_TE_802456 Chr1 15392617 15392853 - ORSgTEMT01600639 228 0.3269 (966/2955) 1 Intact Os_TE_802458 Os_TE_802450 Chr1 15389180 15389181 - RIRE3_LTR 12054 0.0007 (2/2877) 0 * * Os_TE_802420 Chr1 15365835 15364177 - COPIO_LTR 11693 0.2960 (876/2959) 1 Solo_LTR * Os_TE_802410 Chr1 15361243 15361244 - COPIA2-LTR_OS 6433 0.0045 (4/887) 0 * * Os_TE_802408 Chr1 15360843 15362453 + MERMITEB 1610 0.2943 (861/2926) 1 Intact * Os_TE_802396 Chr1 15353917 15353916 - ORSiTERTOOT00089 329 0.0024 (7/2960) 0 * * Os_TE_802385 Chr1 15347906 15347905 + ORSiTERTOOT00033 4884 0.0003 (1/2968) 0 * * Os_TE_802383 Chr1 15345978 15345979 - CASIN 282 0.2102 (587/2792) 0 * * Os_TE_802373 Chr1 15344296 15344295 + INDITTO 263 0.2786 (816/2929) 0 * * Os_TE_802371 Chr1 15343735 15343734 - NDNA1TNA_OS 334 0.2431 (531/2184) 0 * * Os_TE_802365 Chr1 15335601 15335600 - TRUNCATOR2_LTR 2904 0.0032 (7/2189) 0 * * Os_TE_802346 Chr1 15325853 15325852 - RETROSAT2LTR 12796 0.2937 (878/2989) 0 * * Os_TE_802298 Chr1 15307713 15301259 - COPIA2-LTR_OS 6433 0.5225 (883/1690) 1 Intact Os_TE_802294 Os_TE_802294 Chr1 15301259 15307713 + COPIA2-LTR_OS 6433 0.5138 (856/1666) 1 Intact Os_TE_802298 Os_TE_802281 Chr1 15298450 15298449 - RETRO2_LTR 12874 0.3547 (770/2171) 0 * * Os_TE_802276 Chr1 15294845 15294701 - ORSgTEMT01701348 105 0.7225 (2161/2991) 1 Intact Os_TE_802273 Os_TE_802273 Chr1 15294691 15294840 - ORSgTEMT00200177 142 0.7219 (2147/2974) 1 Intact Os_TE_802276 Os_TE_802272 Chr1 15294568 15294569 - RIREX_LTR 8828 0.0104 (31/2981) 0 * Os_TE_802271 Os_TE_802271 Chr1 15294564 15294563 + RIREX_LTR 8828 0.0101 (30/2981) 0 * Os_TE_802272 Os_TE_802266 Chr1 15291990 15291989 + ORSgTEMT01601934 207 0.0128 (37/2887) 0 * Os_TE_802265 Os_TE_802265 Chr1 15291987 15291988 - ORSgTEMT01601432 239 0.0148 (44/2974) 0 * Os_TE_802266 Os_TE_802264 Chr1 15291392 15291393 - OSTE21 1271 0.2792 (823/2948) 0 * * Os_TE_802253 Chr1 15288384 15288385 - ORSgTEMT00501765 148 0.2909 (856/2943) 0 * * Os_TE_802249 Chr1 15287878 15288100 + ORSgTEMT01600523 230 0.7093 (1537/2167) 1 Intact * Os_TE_802239 Chr1 15286143 15286144 - RETROFIT3_LTR 5391 0.0020 (6/2997) 0 * Os_TE_802238 Os_TE_802238 Chr1 15286139 15286138 + RETROFIT3_LTR 5391 0.0020 (6/2998) 0 * Os_TE_802239 Os_TE_802236 Chr1 15285500 15285501 - COPIA2-LTR_OS 6433 0.0003 (1/2974) 0 * Os_TE_802235 Os_TE_802235 Chr1 15285496 15285495 + COPIA2-LTR_OS 6433 0.0003 (1/2975) 0 * Os_TE_802236 Os_TE_802233 Chr1 15285233 15285232 - ORSgTERT00201216 11284 0.0152 (44/2893) 0 * * Os_TE_802232 Chr1 15285080 15285081 + MERMITE18B 1306 0.2854 (838/2936) 0 * * Os_TE_802225 Chr1 15282426 15282425 - SPMLIKE 10989 0.0003 (1/2965) 0 * * Os_TE_802223 Chr1 15281852 15281853 + ORSgTEMT00101674 340 0.0795 (237/2982) 0 * * Os_TE_802208 Chr1 15275261 15275260 - CACTA-K 1131 0.0029 (5/1746) 0 * * Os_TE_802172 Chr1 15266945 15266944 - TYPEH 309 0.0034 (6/1756) 0 * * Os_TE_802171 Chr1 15266703 15266704 - ORSgTETN00200001 10994 0.0144 (25/1740) 0 * * Os_TE_802149 Chr1 15256144 15256145 + TRUNCATOR 2918 0.0231 (60/2601) 0 * * Os_TE_802119 Chr1 15234906 15235058 + ORSgTEMT01702268 154 0.6725 (1733/2577) 1 Intact * Os_TE_802115 Chr1 15234109 15233766 - ORSgTEMT00600484 344 0.3243 (864/2664) 1 Intact Os_TE_802111 Os_TE_802111 Chr1 15233762 15234109 - ORSgTEMT00600085 364 0.3429 (852/2485) 1 Intact Os_TE_802115 Os_TE_802110 Chr1 15233616 15233617 - CACTA-I 1124 0.3773 (872/2311) 0 * * Os_TE_802109 Chr1 15233181 15233182 + ORSgTEMT00501504 140 0.3953 (895/2264) 0 * Os_TE_802108 Os_TE_802108 Chr1 15233178 15233177 - ORSgTEMT00501447 126 0.3495 (893/2555) 0 * Os_TE_802109 Os_TE_802096 Chr1 15222375 15221143 - SZ-5LTR 1223 0.7543 (2226/2951) 1 Intact * Os_TE_802085 Chr1 15216702 15216703 + ORSgTETNOOT00908 242 0.0390 (115/2952) 0 * * Os_TE_802065 Chr1 15210584 15211145 - ORSiTERTOOT00291 11421 0.3031 (868/2864) 1 Intact * Os_TE_802050 Chr1 15195550 15195549 + ORSgTEMT01700505 154 0.0385 (115/2986) 0 * * Os_TE_802039 Chr1 15193958 15193959 - ORSgTERT00201216 11284 0.0017 (5/2985) 0 * * Os_TE_802036 Chr1 15192555 15192556 + SEVERIN-2 1952 0.0139 (41/2951) 0 * * Os_TE_802034 Chr1 15191228 15191227 + TRUNCATOR2_LTR 2904 0.0856 (256/2989) 0 * * Os_TE_802031 Chr1 15189540 15189541 + RETROSAT2LTR 12796 0.0003 (1/2948) 0 * Os_TE_802030 Os_TE_802030 Chr1 15189538 15189537 - RETROSAT2LTR 12796 0.0003 (1/2925) 0 * Os_TE_802031 Os_TE_802029 Chr1 15188574 15188575 - RETRO2_LTR 12874 0.1407 (418/2971) 0 * * Os_TE_802027 Chr1 15188563 15188564 - RETRO2_LTR 12874 0.7189 (2141/2978) 0 * * Os_TE_802026 Chr1 15188280 15188281 - MuDR4_OS 7610 0.0144 (43/2992) 0 * Os_TE_802025 Os_TE_802025 Chr1 15188274 15188273 - MuDR4_OS 7610 0.0134 (40/2990) 0 * Os_TE_802026 Os_TE_802014 Chr1 15184324 15182855 + SZ-31LTR 1470 0.3121 (931/2983) 1 Intact Os_TE_802009 Os_TE_802009 Chr1 15182855 15184324 - SZ-31LTR 1470 0.3142 (929/2957) 1 Intact Os_TE_802014 Os_TE_802000 Chr1 15182045 15182044 + ORSgTETNOOT00908 242 0.0399 (115/2881) 0 * * Os_TE_801978 Chr1 15173783 15173784 - MuDR3_OS 8604 0.6433 (1870/2907) 0 * * Os_TE_801976 Chr1 15173250 15172553 - BAJIELTR 4500 0.3515 (1046/2976) 1 Solo_LTR Os_TE_801973 Os_TE_801973 Chr1 15172553 15173250 + BAJIELTR 4500 0.3502 (1040/2970) 1 Solo_LTR Os_TE_801976 Os_TE_801972 Chr1 15172499 15172498 + ORSgTETNOOT01166 259 0.0003 (1/2935) 0 * * Os_TE_801969 Chr1 15171920 15171921 - OSTE17 734 0.1365 (408/2990) 0 * * Os_TE_801968 Chr1 15171525 15171526 + COPIA2-LTR_OS 6433 0.0381 (114/2989) 0 * Os_TE_801967 Os_TE_801967 Chr1 15171521 15171520 - COPIA2-LTR_OS 6433 0.0387 (116/2996) 0 * Os_TE_801968 Os_TE_801952 Chr1 15158584 15158585 - SZ-40LTR 2465 0.0391 (116/2968) 0 * Os_TE_801951 Os_TE_801951 Chr1 15158580 15158579 + GYPSY-A_LTR 8951 0.0346 (102/2944) 0 * Os_TE_801952 Os_TE_801948 Chr1 15157866 15157865 - AMYLTP 383 0.1093 (322/2947) 0 * * Os_TE_801933 Chr1 15146936 15146937 - F118 179 0.7209 (2146/2977) 0 * * Os_TE_801932 Chr1 15146913 15146914 - OSMU5 4881 0.0003 (1/2955) 0 * Os_TE_801931 Os_TE_801931 Chr1 15146903 15146902 - OSMU5 4881 0.0003 (1/2974) 0 * Os_TE_801932 Os_TE_801929 Chr1 15145598 15145599 - RIREX_LTR 8828 0.0017 (5/2992) 0 * Os_TE_801928 Os_TE_801928 Chr1 15145594 15145593 + RIREX_LTR 8828 0.0013 (4/2995) 0 * Os_TE_801929 Os_TE_801914 Chr1 15142215 15142214 + Cassandra_OS-LTR 764 0.0401 (118/2944) 0 * * Os_TE_801905 Chr1 15139540 15139541 - ORSiTETNOOT00216 3569 0.0106 (30/2823) 0 * * Os_TE_801898 Chr1 15134315 15134316 + SC-8_LTR 4951 0.0024 (7/2976) 0 * * Os_TE_801750 Chr1 14962426 14962425 + RETRO2_LTR 12874 0.0019 (2/1062) 0 * * Os_TE_801725 Chr1 14951333 14951334 - ORSgTEMT02400246 177 0.1098 (116/1056) 0 * * Os_TE_801691 Chr1 14926060 14926059 - ENSPM4_OS 11610 0.0011 (1/892) 0 * * Os_TE_801678 Chr1 14919768 14919769 + HARB-1_OS 5166 0.0011 (1/887) 0 * * Os_TE_801669 Chr1 14917538 14917261 + ORSgTEMT05200253 282 0.3932 (891/2266) 1 Intact * Os_TE_801619 Chr1 14897392 14897393 + ORSiCMCM00100013 9728 0.0008 (2/2408) 0 * Os_TE_801618 Os_TE_801618 Chr1 14897388 14897387 + SZ-38 8643 0.0008 (2/2409) 0 * Os_TE_801619 Os_TE_801616 Chr1 14896492 14896491 - COPI2_LTR 4733 0.0021 (5/2339) 0 * * Os_TE_801615 Chr1 14895858 14895859 + RIREX_LTR 8828 0.0005 (1/2078) 0 * Os_TE_801614 Os_TE_801614 Chr1 14895854 14895853 - RIREX_LTR 8828 0.0005 (1/1896) 0 * Os_TE_801615 Os_TE_801611 Chr1 14895106 14895107 - GAIJIN 147 0.0008 (2/2363) 0 * * Os_TE_801606 Chr1 14894655 14894656 - SZ-35LTR 3853 0.0122 (29/2374) 0 * Os_TE_801605 Os_TE_801605 Chr1 14894651 14894650 + RETROSAT4_LTR 13504 0.0097 (23/2359) 0 * Os_TE_801606 Os_TE_801603 Chr1 14894531 14894532 + RETROSAT2LTR 12796 0.0114 (27/2378) 0 * Os_TE_801602 Os_TE_801602 Chr1 14894529 14894528 - RETROSAT2LTR 12796 0.0122 (29/2380) 0 * Os_TE_801603 Os_TE_801555 Chr1 14882370 14882369 - OSTE33 1012 0.0233 (56/2405) 0 * Os_TE_801554 Os_TE_801554 Chr1 14882362 14882363 + OSTE33 1012 0.0261 (63/2410) 0 * Os_TE_801555 Os_TE_801551 Chr1 14880996 14880995 - OSTE18 129 0.3220 (770/2391) 0 * * Os_TE_801549 Chr1 14878626 14878627 + OSTE33 1012 0.0210 (50/2383) 0 * Os_TE_801548 Os_TE_801548 Chr1 14878617 14878616 + OSTE33 1012 0.0206 (49/2382) 0 * Os_TE_801549 Os_TE_801545 Chr1 14878442 14878443 - ENSPM4_OS 11610 0.0033 (8/2394) 0 * * Os_TE_801542 Chr1 14877546 14860699 - ORSgTETN00200001 10994 0.4853 (1135/2339) 1 Intact * Os_TE_801521 Chr1 14858450 14858449 + SEVERIN-2 1952 0.0123 (26/2109) 0 * * Os_TE_801520 Chr1 14858396 14858397 - RPO_OS 1983 0.0005 (1/1835) 0 * * Os_TE_801518 Chr1 14857810 14857809 + OLO24 345 0.2616 (771/2947) 0 * * Os_TE_801511 Chr1 14853422 14852474 + ORSiTERTOOT00270 8019 0.4034 (1186/2940) 1 Intact * Os_TE_801503 Chr1 14850754 14834208 + RETROSAT2LTR 12796 0.4193 (1151/2745) 1 Intact * Os_TE_801496 Chr1 14847514 14844391 + RETROSAT2LTR 12796 0.7318 (161/220) 1 Solo_LTR * Os_TE_801466 Chr1 14834208 14847514 + RETROSAT2LTR 12796 0.5547 (1206/2174) 1 Intact * Os_TE_801465 Chr1 14834122 14834123 - CRATA-2 851 0.0058 (17/2921) 0 * Os_TE_801464 Os_TE_801464 Chr1 14834115 14834114 + CRATA-2 851 0.0070 (20/2875) 0 * Os_TE_801465 Os_TE_801462 Chr1 14834078 14834077 - COPIA2-LTR_OS 6433 0.0003 (1/2919) 0 * * Os_TE_801460 Chr1 14834031 14834032 + SZ-66LTR 1223 0.2524 (723/2865) 0 * Os_TE_801459 Os_TE_801459 Chr1 14834027 14834026 - GYPSO_LTR 9828 0.2752 (806/2929) 0 * Os_TE_801460 Os_TE_801443 Chr1 14826178 14826177 - COWARD 200 0.0071 (18/2543) 0 * * Os_TE_801441 Chr1 14825952 14825953 - SC-3_LTR 5748 0.1139 (334/2933) 0 * * Os_TE_801436 Chr1 14822201 14822200 - ORSgTEMT00500110 151 0.0089 (26/2934) 0 * * Os_TE_801434 Chr1 14818592 14818593 - SETARIA1 1293 0.0017 (5/2990) 0 * * Os_TE_801433 Chr1 14818440 14818441 - STOWAWAY1_OS 149 0.0017 (5/2988) 0 * Os_TE_801432 Os_TE_801432 Chr1 14818439 14818438 + STOWAWAY1_OS 149 0.0017 (5/2987) 0 * Os_TE_801433 Os_TE_801427 Chr1 14816247 14816097 - ORSgTEMT01701348 105 0.7058 (2109/2988) 1 Intact Os_TE_801425 Os_TE_801425 Chr1 14816092 14816243 + ORSgTEMT01700791 134 0.7075 (2112/2985) 1 Intact Os_TE_801427 Os_TE_801424 Chr1 14816015 14816016 - SC-8_LTR 4951 0.0003 (1/2980) 0 * Os_TE_801423 Os_TE_801423 Chr1 14816011 14816010 + ORSiTERTOOT00381 4988 0.0003 (1/2989) 0 * Os_TE_801424 Os_TE_801421 Chr1 14815167 14815168 - STOWAWAY13_OS 251 0.0007 (2/2988) 0 * * Os_TE_801418 Chr1 14815105 14815104 - SC-8_LTR 4951 0.0007 (2/2987) 0 * * Os_TE_801409 Chr1 14806699 14807735 + SETARIA2 1142 0.8105 (2078/2564) 1 Intact * Os_TE_801404 Chr1 14804511 14804512 + ORSgTEMT03000021 369 0.1878 (499/2657) 0 * Os_TE_801403 Os_TE_801403 Chr1 14804499 14804498 - TYPEU 362 0.2753 (803/2917) 0 * Os_TE_801404 Os_TE_801402 Chr1 14804460 14804459 + DS-RICE4N 715 0.0092 (24/2608) 0 * * Os_TE_801388 Chr1 14798339 14798340 - RIREX_LTR 8828 0.0017 (5/2972) 0 * Os_TE_801387 Os_TE_801387 Chr1 14798335 14798334 + RIREX_LTR 8828 0.0017 (5/2936) 0 * Os_TE_801388 Os_TE_801356 Chr1 14791492 14791493 + RIRE2_LTR 11306 0.0100 (30/2992) 0 * Os_TE_801355 Os_TE_801355 Chr1 14791488 14791487 - RIRE2_LTR 11306 0.0094 (28/2985) 0 * Os_TE_801356 Os_TE_801350 Chr1 14789415 14789416 + SPMLIKE 10989 0.1063 (315/2964) 0 * Os_TE_801349 Os_TE_801349 Chr1 14789413 14789412 - ORSgTETN00200001 10994 0.1062 (316/2975) 0 * Os_TE_801350 Os_TE_801328 Chr1 14780344 14780345 + OSTONOR1_LTR 6440 0.0010 (3/2912) 0 * * Os_TE_801308 Chr1 14775478 14775479 + RIREX_LTR 8828 0.0003 (1/2922) 0 * Os_TE_801307 Os_TE_801307 Chr1 14775474 14775473 - RIREX_LTR 8828 0.0003 (1/2920) 0 * Os_TE_801308 Os_TE_801286 Chr1 14769389 14769388 - ORSgTERT00201216 11284 0.0186 (52/2795) 0 * * Os_TE_801281 Chr1 14767240 14767241 - SZ-22_LTR 4403 0.0006 (1/1710) -1 * Os_TE_801280 Os_TE_801280 Chr1 14767236 14767235 + ORSiTERTOOT00226 792 0.0006 (1/1736) -1 * Os_TE_801281 Os_TE_801276 Chr1 14766027 14766028 + MuDR2_OS 6770 0.0598 (167/2793) 0 * Os_TE_801275 Os_TE_801275 Chr1 14766019 14766018 - MuDR2_OS 6770 0.0536 (153/2853) 0 * Os_TE_801276 Os_TE_801265 Chr1 14764582 14764581 - ORSgTEMT01400038 210 0.0007 (2/2790) 0 * * Os_TE_801263 Chr1 14763623 14763624 + ORSgTETNOOT00908 242 0.1377 (396/2875) 0 * * Os_TE_801262 Chr1 14763446 14763447 + TAMI2 254 0.0216 (64/2958) 0 * Os_TE_801261 Os_TE_801261 Chr1 14763438 14763437 + TAMI2 254 0.0246 (73/2968) 0 * Os_TE_801262 Os_TE_801235 Chr1 14751813 14751814 + ORSgTETNOOT02316 263 0.0203 (59/2907) 0 * * Os_TE_801231 Chr1 14750066 14750067 - HATOS1 3488 0.0234 (70/2988) 0 * Os_TE_801230 Os_TE_801230 Chr1 14750059 14750058 + QINNIU 528 0.0284 (72/2538) 0 * Os_TE_801231 Os_TE_801228 Chr1 14749927 14749926 - COPI2_LTR 4733 0.0003 (1/2994) 0 * * Os_TE_801203 Chr1 14742063 14742062 + AMYLTP 383 0.0007 (2/2860) 0 * * Os_TE_801190 Chr1 14737721 14737720 - ORSgTEMT00500600 149 0.0007 (2/2958) 0 * * Os_TE_801188 Chr1 14737060 14737061 - INDITTO 263 0.1100 (314/2855) 0 * Os_TE_801187 Os_TE_801187 Chr1 14737058 14737057 + INDITTO 263 0.1091 (314/2878) 0 * Os_TE_801188 Os_TE_801183 Chr1 14733636 14733637 + COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_801182 Os_TE_801182 Chr1 14733632 14733631 - COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_801183 Os_TE_801128 Chr1 14722387 14722386 + RIRE3_LTR 12054 0.2569 (749/2916) 0 * * Os_TE_801047 Chr1 14683429 14683428 + TELIA 141 0.0004 (1/2457) 0 * * Os_TE_801042 Chr1 14679550 14679549 + INDITTO 263 0.0007 (2/2996) 0 * * Os_TE_801040 Chr1 14678590 14678589 + TWIFB1 3737 0.0003 (1/2987) 0 * * Os_TE_801031 Chr1 14677562 14677561 - RIREX_LTR 8828 0.0003 (1/2978) 0 * * Os_TE_801019 Chr1 14675408 14675409 - ORSgTETN00200001 10994 0.1471 (438/2977) 0 * Os_TE_801018 Os_TE_801018 Chr1 14675406 14675405 + SPMLIKE 10989 0.1503 (448/2981) 0 * Os_TE_801019 Os_TE_801017 Chr1 14675299 14675300 + SPMLIKE 10989 0.0003 (1/2972) 0 * Os_TE_801016 Os_TE_801016 Chr1 14675297 14675296 - ORSgTETN00200001 10994 0.0003 (1/2964) 0 * Os_TE_801017 Os_TE_801012 Chr1 14674969 14674968 + SPMLIKE 10989 0.0201 (60/2982) 0 * * Os_TE_801005 Chr1 14672570 14660487 + RIRE3_LTR 12054 0.3165 (915/2891) 1 Intact Os_TE_800997 Os_TE_800997 Chr1 14660487 14672570 - RIRE3_LTR 12054 0.3349 (987/2947) 1 Intact Os_TE_801005 Os_TE_800995 Chr1 14659539 14659540 - ORSiTERT00200154 9386 0.0184 (54/2937) 0 * * Os_TE_800976 Chr1 14650381 14647783 - SEVERIN-2 1952 0.4153 (1231/2964) 1 Intact * Os_TE_800960 Chr1 14646047 14646046 - ORSgTETN00200001 10994 0.0003 (1/2964) 0 * * Os_TE_800951 Chr1 14644988 14644989 + NDNA1TNA_OS 334 0.0010 (3/2993) 0 * Os_TE_800950 Os_TE_800950 Chr1 14644986 14644985 - NDNA1TNA_OS 334 0.0010 (3/2993) 0 * Os_TE_800951 Os_TE_800942 Chr1 14641527 14641526 + TRUNCATOR 2918 0.5500 (1479/2689) 0 * Os_TE_800941 Os_TE_800941 Chr1 14641526 14641527 - TRUNCATOR 2918 0.6057 (1811/2990) 0 * Os_TE_800942 Os_TE_800914 Chr1 14633350 14633349 + TNR2A 152 0.0485 (143/2948) 0 * * Os_TE_800907 Chr1 14631460 14631459 + SZ-55_LTR 10318 0.0004 (1/2808) 0 * * Os_TE_800886 Chr1 14628382 14628381 - ORSgTEMT00900099 250 0.2928 (875/2988) 0 * Os_TE_800885 Os_TE_800885 Chr1 14628378 14628379 + ORSgTEMT00901844 250 0.2971 (889/2992) 0 * Os_TE_800886 Os_TE_800884 Chr1 14628301 14628302 - ORSiTETNOOT00156 3648 0.0090 (27/2991) 0 * Os_TE_800883 Os_TE_800883 Chr1 14628294 14628293 + TWIFBIG 3567 0.0090 (27/2985) 0 * Os_TE_800884 Os_TE_800882 Chr1 14628173 14628174 + NDNA1TNA_OS 334 0.0585 (175/2994) 0 * * Os_TE_800870 Chr1 14620826 14620825 + GYPSY1-LTR_OS 8900 0.0007 (2/2977) 0 * * Os_TE_800860 Chr1 14615432 14615431 - DS-RICE2N 613 0.0715 (180/2517) 0 * * Os_TE_800857 Chr1 14613974 14613975 + HELITRON2_OS 15167 0.0228 (67/2938) 0 * * Os_TE_800856 Chr1 14613763 14613764 - RIRE3A_LTR 10580 0.0008 (2/2515) 0 * * Os_TE_800853 Chr1 14612356 14612355 + OSR3_LTR 5201 0.0018 (5/2717) 0 * * Os_TE_800852 Chr1 14611412 14611411 + ORSgTEMT01400031 216 0.0013 (4/2992) 0 * Os_TE_800851 Os_TE_800851 Chr1 14611409 14611410 - ORSgTEMT01400006 213 0.0017 (5/2995) 0 * Os_TE_800852 Os_TE_800847 Chr1 14610766 14610765 + TNR1 237 0.0017 (5/2983) 0 * * Os_TE_800832 Chr1 14602110 14602111 + SC-7_LTR 4431 0.0004 (1/2509) 0 * * Os_TE_800812 Chr1 14594451 14594450 + NDNA1TNA_OS 334 0.0017 (4/2314) 0 * Os_TE_800811 Os_TE_800811 Chr1 14594441 14594442 - NDNA1TNA_OS 334 0.0018 (4/2280) 0 * Os_TE_800812 Os_TE_800804 Chr1 14591922 14591923 - RIREX_LTR 8828 0.0008 (2/2521) 0 * Os_TE_800803 Os_TE_800803 Chr1 14591918 14591917 + RIREX_LTR 8828 0.0008 (2/2518) 0 * Os_TE_800804 Os_TE_800802 Chr1 14589662 14589663 + SZ-55_LTR 10318 0.0004 (1/2514) 0 * Os_TE_800801 Os_TE_800801 Chr1 14589658 14589657 - SZ-55_LTR 10318 0.0004 (1/2516) 0 * Os_TE_800802 Os_TE_800800 Chr1 14589489 14589490 + TOS17LTR 138 0.0128 (32/2504) 0 * Os_TE_800799 Os_TE_800799 Chr1 14589485 14589484 - TOS17LTR 138 0.0152 (38/2507) 0 * Os_TE_800800 Os_TE_800798 Chr1 14588057 14588058 + COPIA2-LTR_OS 6433 0.0004 (1/2508) 0 * Os_TE_800797 Os_TE_800797 Chr1 14588053 14588052 - COPIA2-LTR_OS 6433 0.0004 (1/2513) 0 * Os_TE_800798 Os_TE_800784 Chr1 14580542 14580541 - COPI2_LTR 4733 0.0249 (66/2648) 0 * * Os_TE_800783 Chr1 14580028 14580027 + OsSN3 183 0.0019 (5/2635) 0 * * Os_TE_800782 Chr1 14578893 14578894 - NDNA1TNA_OS 334 0.0530 (140/2641) 0 * Os_TE_800781 Os_TE_800781 Chr1 14578891 14578890 + NDNA1TNA_OS 334 0.0519 (137/2641) 0 * Os_TE_800782 Os_TE_800778 Chr1 14577738 14577739 - OLO24 345 0.0011 (3/2617) 0 * Os_TE_800777 Os_TE_800777 Chr1 14577736 14577735 + OLO24 345 0.0011 (3/2612) 0 * Os_TE_800778 Os_TE_800704 Chr1 14543740 14534885 - GYPSY1-LTR_OS 8900 0.3515 (985/2802) 1 Intact Os_TE_800693 Os_TE_800693 Chr1 14534885 14543738 + GYPSY1-LTR_OS 8900 0.2964 (758/2557) 1 Intact Os_TE_800704 Os_TE_800692 Chr1 14534831 14533854 + RETRO2_LTR 12874 0.1236 (315/2548) 0.8 Solo_LTR Os_TE_800689 Os_TE_800689 Chr1 14533857 14534837 - RETRO2_LTR 12874 0.1385 (360/2599) 0.95 Solo_LTR Os_TE_800692 Os_TE_800684 Chr1 14532779 14532780 - RPO_OS 1983 0.0019 (5/2569) 0 * Os_TE_800683 Os_TE_800683 Chr1 14532776 14532775 + RPO_OS 1983 0.0016 (4/2568) 0 * Os_TE_800684 Os_TE_800674 Chr1 14530560 14530559 - COPI2_LTR 4733 0.0025 (7/2824) 0 * * Os_TE_800671 Chr1 14526812 14526811 - ORSgTERT00201216 11284 0.0258 (73/2827) 0 * * Os_TE_800633 Chr1 14518645 14518646 + SPMLIKE 10989 0.0556 (165/2967) 0 * * Os_TE_800595 Chr1 14505247 14505248 + MPING 430 0.0020 (6/2988) 0 * Os_TE_800594 Os_TE_800594 Chr1 14505245 14505244 - MPING 430 0.0020 (6/2989) 0 * Os_TE_800595 Os_TE_800589 Chr1 14503650 14503651 - RIREX_LTR 8828 0.0003 (1/2947) 0 * Os_TE_800588 Os_TE_800588 Chr1 14503646 14503645 + RIREX_LTR 8828 0.0003 (1/2940) 0 * Os_TE_800589 Os_TE_800586 Chr1 14503346 14503347 - COPIA2-LTR_OS 6433 0.0007 (2/2873) 0 * Os_TE_800585 Os_TE_800585 Chr1 14503342 14503341 + COPIA2-LTR_OS 6433 0.0007 (2/2900) 0 * Os_TE_800586 Os_TE_800554 Chr1 14489486 14489487 + TRUNCATOR 2918 0.2266 (677/2987) 0 * * Os_TE_800553 Chr1 14487349 14487348 - RETROSAT4_LTR 13504 0.0086 (25/2911) 0 * * Os_TE_800545 Chr1 14482394 14482393 + ORSgTETNOOT00032 218 0.0091 (27/2983) 0 * * Os_TE_800508 Chr1 14467841 14467840 - COPIA2-LTR_OS 6433 0.0003 (1/2981) 0 * * Os_TE_800494 Chr1 14459607 14459608 - INDITTO 263 0.0258 (40/1549) 0 * * Os_TE_800438 Chr1 14432135 14432136 - ORSgTERT00201216 11284 0.0017 (5/2980) 0 * Os_TE_800437 Os_TE_800437 Chr1 14432131 14432130 - RIRE2_LTR 11306 0.0017 (5/2980) 0 * Os_TE_800438 Os_TE_800417 Chr1 14412906 14412905 + RIREX_LTR 8828 0.0003 (1/2955) 0 * * Os_TE_800406 Chr1 14408330 14408331 + TRUNCATOR 2918 0.0008 (2/2529) 0 * * Os_TE_800392 Chr1 14404117 14404118 - RIRE2_LTR 11306 0.0114 (30/2638) 0 * Os_TE_800391 Os_TE_800391 Chr1 14404113 14404112 - ORSgTERT00201216 11284 0.0117 (31/2643) 0 * Os_TE_800392 Os_TE_800390 Chr1 14403878 14403879 + SZ-67LTR 1540 0.4482 (1340/2990) 0 * Os_TE_800389 Os_TE_800389 Chr1 14403875 14403874 - SZ-67LTR 1540 0.3687 (976/2647) 0 * Os_TE_800390 Os_TE_800388 Chr1 14403257 14403258 + RETRO2A_LTR 12895 0.0007 (2/2744) 0 * Os_TE_800387 Os_TE_800387 Chr1 14403253 14403252 - RETRO1_LTR 8314 0.0007 (2/2995) 0 * Os_TE_800388 Os_TE_800345 Chr1 14390331 14390330 - TRUNCATOR 2918 0.0989 (292/2951) 0 * * Os_TE_800344 Chr1 14390330 14390331 + TRUNCATOR 2918 0.1012 (302/2985) 0 * Os_TE_800343 Os_TE_800343 Chr1 14390324 14390323 - ORSiTERT00200154 9386 0.0991 (294/2968) 0 * Os_TE_800344 Os_TE_800337 Chr1 14387424 14387425 + RIREX_LTR 8828 0.0003 (1/2963) 0 * * Os_TE_800328 Chr1 14383785 14383784 + HELITRON8_OS 8831 0.0020 (5/2561) 0 * * Os_TE_800326 Chr1 14383474 14383473 - RETROSAT2LTRA 3112 0.0004 (1/2539) 0 * * Os_TE_800323 Chr1 14382307 14382308 + CACTA-I 1124 0.0017 (5/2989) 0 * Os_TE_800322 Os_TE_800322 Chr1 14382305 14382304 - CACTA-H 1152 0.0013 (4/2993) 0 * Os_TE_800323 Os_TE_800317 Chr1 14380503 14380502 + CACTA-D 1038 0.0017 (5/2989) 0 * Os_TE_800316 Os_TE_800316 Chr1 14380502 14380503 - CACTA-I 1124 0.0017 (5/2983) 0 * Os_TE_800317 Os_TE_800296 Chr1 14374854 14364304 - ORSgTETN00200001 10994 0.2986 (867/2904) 1 Intact Os_TE_800289 Os_TE_800289 Chr1 14364305 14374854 + SPMLIKE 10989 0.2989 (868/2904) 1 Intact Os_TE_800296 Os_TE_800278 Chr1 14362128 14362129 - ORSgTEMT00700002 381 0.0010 (3/2978) 0 * * Os_TE_800275 Chr1 14360167 14360168 + YIREN 905 0.0013 (4/2977) 0 * * Os_TE_800259 Chr1 14355266 14355267 - ORSgTEMT01700794 153 0.0004 (1/2809) 0 * * Os_TE_800241 Chr1 14352701 14352702 + ORSgTEMT01800100 438 0.0003 (1/2881) 0 * * Os_TE_800239 Chr1 14352626 14352625 - ORSgTEMT01800105 452 0.6867 (1957/2850) 0 * * Os_TE_800235 Chr1 14352367 14352368 + NDNA1TNA_OS 334 0.0068 (20/2956) 0 * * Os_TE_800233 Chr1 14352329 14352330 - INDITTO 263 0.0003 (1/2906) 0 * Os_TE_800232 Os_TE_800232 Chr1 14352327 14352326 + INDITTO 263 0.0003 (1/2931) 0 * Os_TE_800233 Os_TE_800229 Chr1 14352152 14352151 - ORSgTEMT02000041 194 0.0221 (62/2808) 0 * * Os_TE_800227 Chr1 14351839 14352163 - ORSgTEMT00101116 321 0.7978 (1255/1573) 1 Intact * Os_TE_800213 Chr1 14349750 14349751 + ORSgTETNOOT00908 242 0.0797 (238/2988) 0 * * Os_TE_800198 Chr1 14346177 14346176 - STOWAWAY51_OS 246 0.0007 (2/2914) 0 * Os_TE_800197 Os_TE_800197 Chr1 14346171 14346172 + STOWAWAY51_OS 246 0.0007 (2/2982) 0 * Os_TE_800198 Os_TE_800185 Chr1 14341916 14341917 + ORSiTERTOOT00296 5553 0.0003 (1/2995) 0 * Os_TE_800184 Os_TE_800184 Chr1 14341912 14341911 - SC-3_LTR 5748 0.0003 (1/2993) 0 * Os_TE_800185 Os_TE_800182 Chr1 14341230 14341231 - ORSgTEMT01700912 147 0.0294 (88/2993) 0 * Os_TE_800181 Os_TE_800181 Chr1 14341227 14341226 - ORSgTEMT01701403 154 0.0297 (89/2993) 0 * Os_TE_800182 Os_TE_800180 Chr1 14341224 14341225 - ORSgTEMT01701281 153 0.0297 (89/2992) 0 * * Os_TE_800178 Chr1 14340343 14340344 - RPO_OS 1983 0.0284 (84/2953) 0 * * Os_TE_800165 Chr1 14335159 14335160 - RETRO1_LTR 8314 0.0007 (2/2995) 0 * * Os_TE_800161 Chr1 14331409 14331410 - F569 228 0.0003 (1/2982) 0 * * Os_TE_800143 Chr1 14324747 14324452 - STOWAWAY11_OS 292 0.5374 (1424/2650) 1 Intact * Os_TE_800139 Chr1 14324267 14324268 + RIRE2_LTR 11306 0.5211 (1496/2871) 0 * * Os_TE_800138 Chr1 14324263 14324262 - RIREX_LTR 8828 0.1641 (435/2651) -1 * * Os_TE_800132 Chr1 14323277 14323278 - STOWAWAY14_OS 258 0.0262 (78/2982) 0 * * Os_TE_800129 Chr1 14322103 14322397 + STOWAWAY11_OS 292 0.3485 (1013/2907) 1 Intact * Os_TE_800120 Chr1 14320128 14320129 - ENSPM_OS 9843 0.0016 (4/2547) 0 * * Os_TE_800108 Chr1 14305304 14305305 + CASLET 354 0.0017 (5/2980) 0 * * Os_TE_800104 Chr1 14303280 14303281 - TWIFB1 3737 0.0007 (2/2800) 0 * * Os_TE_800101 Chr1 14301999 14302000 - TYPEM 227 0.0092 (27/2944) 0 * * Os_TE_800089 Chr1 14292192 14292193 - STOWAWAY11_OS 292 0.3473 (1028/2960) 0 * * Os_TE_800085 Chr1 14291153 14290822 + ORSgTEMT00100272 356 0.4675 (905/1936) 1 Intact Os_TE_800082 Os_TE_800082 Chr1 14290816 14291150 + NDNA1TNA_OS 334 0.4779 (940/1967) 1 Intact Os_TE_800085 Os_TE_800074 Chr1 14289882 14289618 - INDITTO 263 0.5752 (949/1650) 1 Intact Os_TE_800070 Os_TE_800070 Chr1 14289618 14289882 - ORSgTETNOOT00053 263 0.5682 (950/1672) 1 Intact Os_TE_800074 Os_TE_800067 Chr1 14289444 14289445 + ORSgTETNOOT01583 259 0.4915 (900/1831) 0 * Os_TE_800066 Os_TE_800066 Chr1 14289443 14289442 - STOWAWAY17_OS 259 0.5253 (1027/1955) 0 * Os_TE_800067 Os_TE_800051 Chr1 14287115 14288620 + ORSiCMCM00100013 9728 0.4823 (913/1893) 1 Intact * Os_TE_800045 Chr1 14285523 14285522 - ORSgTEMT00901388 250 0.5285 (1038/1964) 0 * * Os_TE_800040 Chr1 14284038 14284039 - COWARD 200 0.5005 (951/1900) 0 * * Os_TE_800032 Chr1 14282302 14282070 - ORSgTEMT01602382 236 0.7532 (1950/2589) 1 Intact Os_TE_800031 Os_TE_800031 Chr1 14282065 14282296 + ORSgTEMT01602288 241 0.6641 (1965/2959) 1 Intact Os_TE_800032 Os_TE_800030 Chr1 14281625 14281626 - TYPEG 427 0.0387 (77/1990) 0 * Os_TE_800029 Os_TE_800029 Chr1 14281617 14281616 - TNR8-21 428 0.2849 (749/2629) 0 * Os_TE_800030 Os_TE_800027 Chr1 14280350 14279237 + CACTA-D 1038 0.8410 (1915/2277) 1 Intact * Os_TE_800022 Chr1 14278967 14278966 - STOWAWAY51_OS 246 0.3591 (1068/2974) 0 * * Os_TE_800018 Chr1 14278373 14278594 - ORSgTEMT01600422 238 0.6505 (1928/2964) 1 Intact * Os_TE_800008 Chr1 14276184 14276185 + SPMLIKE 10989 0.0154 (30/1951) 0 * Os_TE_800007 Os_TE_800007 Chr1 14276182 14276181 - ORSgTETN00200001 10994 0.0183 (36/1971) 0 * Os_TE_800008 Os_TE_800005 Chr1 14274262 14274263 + STOWAWAY8_OS 259 0.5046 (939/1861) 0 * * Os_TE_799984 Chr1 14261421 14261420 - COPIA2-LTR_OS 6433 0.0009 (1/1112) 0 * * Os_TE_799966 Chr1 14257057 14257058 + ORSgTEMT01400031 216 0.3357 (976/2907) 0 * * Os_TE_799958 Chr1 14254257 14253824 - ORSgTEMT01800062 435 0.6528 (1931/2958) 1 Intact * Os_TE_799954 Chr1 14253312 14253311 + ORSgTEMT00500476 150 0.3594 (1069/2974) 0 * * Os_TE_799950 Chr1 14252649 14252648 + MUDRN5_OS 374 0.0004 (1/2521) 0 * * Os_TE_799941 Chr1 14249445 14249446 - ORSiTERTOOT00078 768 0.0003 (1/2874) 0 * * Os_TE_799938 Chr1 14247107 14247108 + NDNA1TNA_OS 334 0.0017 (5/2976) 0 * * Os_TE_799937 Chr1 14246778 14246779 + TNR2A 152 0.0016 (3/1889) 0 * * Os_TE_799900 Chr1 14232949 14232726 + ORSgTEMT02400034 225 0.3111 (930/2989) 1 Intact * Os_TE_799895 Chr1 14230262 14229095 + OSTE15 1168 0.5378 (1245/2315) 1 Intact Os_TE_799894 Os_TE_799894 Chr1 14229093 14230260 - OSTE15 1168 0.5397 (1252/2320) 1 Intact Os_TE_799895 Os_TE_799879 Chr1 14217628 14217629 + INDITTO 263 0.1488 (435/2923) 0 * Os_TE_799878 Os_TE_799878 Chr1 14217626 14217625 - INDITTO 263 0.1521 (448/2945) 0 * Os_TE_799879 Os_TE_799877 Chr1 14217577 14217342 + STOWAWAY21_OS 243 0.6489 (1878/2894) 1 Intact * Os_TE_799862 Chr1 14212202 14212203 - STOWAWAY12_OS 312 0.4230 (989/2338) -1 * * Os_TE_799858 Chr1 14210841 14210840 - ORSgTEMT01600223 220 0.0010 (3/2936) 0 * Os_TE_799857 Os_TE_799857 Chr1 14210804 14210805 - ORSgTEMT00600304 361 0.0013 (4/2993) 0 * Os_TE_799858 Os_TE_799855 Chr1 14210303 14210304 + SPMLIKE 10989 0.0031 (3/973) -1 * * Os_TE_799820 Chr1 14197006 14197007 - ORSgTEMT01600548 235 0.3293 (960/2915) 0 * * Os_TE_799819 Chr1 14196826 14195739 + CACTA-M 1129 0.6737 (1974/2930) 1 Intact * Os_TE_799800 Chr1 14194290 14194052 - ORSgTEMT01602413 239 0.7016 (1999/2849) 1 Intact Os_TE_799799 Os_TE_799799 Chr1 14194052 14194290 + ORSgTEMT01601525 239 0.6798 (1953/2873) 1 Intact Os_TE_799800 Os_TE_799794 Chr1 14193103 14193104 + COPI2_LTR 4733 0.0003 (1/2972) 0 * Os_TE_799793 Os_TE_799793 Chr1 14193099 14193098 - COPI2_LTR 4733 0.0003 (1/2971) 0 * Os_TE_799794 Os_TE_799789 Chr1 14192372 14192373 + OSTE33 1012 0.0017 (5/2980) 0 * Os_TE_799788 Os_TE_799788 Chr1 14192363 14192362 + OSTE33 1012 0.0025 (5/2023) 0 * Os_TE_799789 Os_TE_799784 Chr1 14191726 14191725 + SPMLIKE 10989 0.0003 (1/2958) 0 * * Os_TE_799781 Chr1 14191384 14191383 - GYPSY1-LTR_OS 8900 0.0030 (6/1969) 0 * * Os_TE_799772 Chr1 14189331 14177860 + SPMLIKE 10989 0.1968 (451/2292) 1 Intact Os_TE_799768 Os_TE_799768 Chr1 14177860 14189331 - ORSgTETN00200001 10994 0.1284 (374/2913) 1 Intact Os_TE_799772 Os_TE_799755 Chr1 14169098 14169099 + ORSgTEMT00500260 149 0.3333 (980/2940) 0 * Os_TE_799754 Os_TE_799754 Chr1 14169097 14169096 - GAIJIN 147 0.3374 (1002/2970) 0 * Os_TE_799755 Os_TE_799751 Chr1 14168907 14169044 + ORSgTEMT01701591 154 0.7436 (2013/2707) 1 Intact * Os_TE_799711 Chr1 14156565 14156566 + RIREX_LTR 8828 0.1241 (319/2571) 0 * * Os_TE_799690 Chr1 14147156 14147157 + TRUNCATOR 2918 0.2130 (539/2530) 0 * * Os_TE_799674 Chr1 14144647 14144648 - INDITTO 263 0.4319 (1110/2570) 0 * * Os_TE_799671 Chr1 14144184 14143802 - AMYLTP 383 0.3483 (882/2532) 1 Intact Os_TE_799669 Os_TE_799669 Chr1 14143802 14144184 + AMYLTP 383 0.3662 (747/2040) 1 Intact Os_TE_799671 Os_TE_799665 Chr1 14143569 14143568 + ORSgTEMT01601122 212 0.2188 (547/2500) 0 * * Os_TE_799643 Chr1 14128600 14128599 - GYPSY-A_LTR 8951 0.0012 (1/823) 0 * * Os_TE_799631 Chr1 14122647 14122648 - RIRE3_LTR 12054 0.0200 (40/2002) 0 * Os_TE_799630 Os_TE_799630 Chr1 14122643 14122642 + RIRE3_LTR 12054 0.0210 (42/2000) 0 * Os_TE_799631 Os_TE_799611 Chr1 14114756 14113258 + MERMITE18D 1491 0.8577 (2351/2741) 1 Intact Os_TE_799609 Os_TE_799609 Chr1 14113256 14114751 + MERMITE18C 1473 0.8967 (2257/2517) 1 Intact Os_TE_799611 Os_TE_799608 Chr1 14113220 14112971 + ORSgTETNOOT00670 249 0.8751 (2362/2699) 1 Intact Os_TE_799607 Os_TE_799607 Chr1 14112962 14113220 + ORSgTETNOOT00792 273 0.8175 (2406/2943) 1 Intact Os_TE_799608 Os_TE_799605 Chr1 14112048 14112049 + SZ-9LTR 965 0.0003 (1/2869) 0 * * Os_TE_799592 Chr1 14109720 14109721 - ORSgTEMT00901723 248 0.1925 (576/2992) 0 * * Os_TE_799591 Chr1 14109684 14109683 + SEVERIN-2 1952 0.0020 (6/2975) 0 * * Os_TE_799579 Chr1 14103698 14105473 - RPO_OS 1983 0.8203 (2447/2983) 1 Intact * Os_TE_799573 Chr1 14102771 14103143 + SINE03_OS 360 0.8153 (2397/2940) 1 Intact * Os_TE_799565 Chr1 14100751 14100559 - ORSgTEMT01600768 234 0.8131 (2258/2777) 1 Intact * Os_TE_799562 Chr1 14099430 14100509 - CACTA-N 987 0.8176 (2416/2955) 1 Intact * Os_TE_799559 Chr1 14095678 14082279 + ORSiCMCM00100013 9728 0.8914 (2462/2762) 1 Intact * Os_TE_799519 Chr1 14075511 14075510 + INDITTO 263 0.1944 (575/2958) 0 * * Os_TE_799506 Chr1 14073241 14073240 - COPIA2-LTR_OS 6433 0.0046 (11/2376) 0 * * Os_TE_799490 Chr1 14070534 14070231 + TYPEH 309 0.8200 (2232/2722) 1 Intact * Os_TE_799483 Chr1 14069368 14069369 + SPMLIKE 10989 0.0101 (30/2980) 0 * Os_TE_799482 Os_TE_799482 Chr1 14069366 14069365 - ORSgTETN00200001 10994 0.0082 (24/2929) 0 * Os_TE_799483 Os_TE_799480 Chr1 14069027 14069026 - ORSgTETN00200001 10994 0.1554 (396/2549) 0 * * Os_TE_799479 Chr1 14068974 14068973 - MICROPON-LIKE-1 428 0.0492 (142/2884) 0 * * Os_TE_799471 Chr1 14067754 14067753 - RIREX_LTR 8828 0.0003 (1/2951) 0 * * Os_TE_799470 Chr1 14066993 14065303 + ORSiOTOT00000037 220 0.8903 (2661/2989) 1 Intact Os_TE_799465 Os_TE_799465 Chr1 14065300 14066988 - ORSiOTOT00000037 220 0.8902 (2660/2988) 1 Intact Os_TE_799470 Os_TE_799462 Chr1 14063123 14063124 - ORSgTEMT02000041 194 0.0144 (43/2993) 0 * * Os_TE_799461 Chr1 14063074 14063075 + AMYLTP 383 0.0013 (4/2990) 0 * * Os_TE_799437 Chr1 14054928 14055212 - ORSgTEMT00100921 319 0.8935 (2669/2987) 1 Intact * Os_TE_799422 Chr1 14047142 14047143 - NDNA1TNA_OS 334 0.0008 (2/2577) 0 * Os_TE_799421 Os_TE_799421 Chr1 14047140 14047139 + NDNA1TNA_OS 334 0.0008 (2/2540) 0 * Os_TE_799422 Os_TE_799419 Chr1 14046487 14046488 - CACTA-E 1207 0.1026 (302/2943) 0 * Os_TE_799418 Os_TE_799418 Chr1 14046485 14046484 - EnSpm-N2_OS 1282 0.1156 (343/2967) 0.11 * Os_TE_799419 Os_TE_799417 Chr1 14046241 14046242 - ORSgTEMT02400179 221 0.0003 (1/2967) 0 * Os_TE_799416 Os_TE_799416 Chr1 14046240 14046239 - TYPEM 227 0.0003 (1/2958) 0 * Os_TE_799417 Os_TE_799415 Chr1 14046124 14046125 + SZ-9LTR 965 0.0147 (43/2918) 0 * Os_TE_799414 Os_TE_799414 Chr1 14046120 14046119 - SZ-9LTR 965 0.0155 (45/2909) 0 * Os_TE_799415 Os_TE_799405 Chr1 14044764 14044765 - MuDR3_OS 8604 0.0826 (229/2771) 0 * Os_TE_799404 Os_TE_799404 Chr1 14044755 14044754 - MuDR3_OS 8604 0.0807 (236/2924) 0 * Os_TE_799405 Os_TE_799387 Chr1 14038190 14038191 + SETARIA1 1293 0.0007 (2/2741) 0 * Os_TE_799386 Os_TE_799386 Chr1 14038184 14038183 + SETARIA2 1142 0.0116 (34/2942) 0 * Os_TE_799387 Os_TE_799382 Chr1 14034901 14034902 - ORSgTERT00201216 11284 0.0013 (4/2992) 0 * Os_TE_799381 Os_TE_799381 Chr1 14034897 14034896 - RIRE2_LTR 11306 0.0017 (5/2991) 0 * Os_TE_799382 Os_TE_799380 Chr1 14034532 14034533 + GAIJIN 147 0.0017 (5/2939) 0 * * Os_TE_799374 Chr1 14031548 14031549 - AMYLTP 383 0.1232 (255/2069) 0 * Os_TE_799373 Os_TE_799373 Chr1 14031540 14031539 + AMYLTP 383 0.3942 (1157/2935) 0 * Os_TE_799374 Os_TE_799371 Chr1 14030966 14030965 - ORSgTEMT01600520 239 0.0017 (5/2977) 0 * Os_TE_799370 Os_TE_799370 Chr1 14030926 14030927 + ORSgTEMT01602016 238 0.0017 (5/2980) 0 * Os_TE_799371 Os_TE_799348 Chr1 14020272 14020273 - TYPEM 227 0.0017 (5/2927) 0 * * Os_TE_799339 Chr1 14014414 14014415 + ORSiTERTOOT00296 5553 0.0003 (1/2990) 0 * Os_TE_799338 Os_TE_799338 Chr1 14014410 14014409 - SC-3_LTR 5748 0.0003 (1/2988) 0 * Os_TE_799339 Os_TE_799291 Chr1 13993233 13993234 - STOWAWAY41_OS 264 0.0007 (2/2966) 0 * * Os_TE_799262 Chr1 13988995 13988996 + SPMLIKE 10989 0.0007 (2/2987) 0 * Os_TE_799261 Os_TE_799261 Chr1 13988993 13988992 - ORSgTETN00200001 10994 0.0007 (2/2988) 0 * Os_TE_799262 Os_TE_799260 Chr1 13988904 13988905 - MPING 430 0.0023 (7/2986) 0 * Os_TE_799259 Os_TE_799259 Chr1 13988902 13988901 + MPING 430 0.0027 (8/2989) 0 * Os_TE_799260 Os_TE_799258 Chr1 13988708 13988707 - OSLINE1-2 7128 0.0013 (4/2991) 0 * * Os_TE_799245 Chr1 13984981 13984982 + TWIF 586 0.0168 (50/2974) 0 * * Os_TE_799236 Chr1 13979502 13979503 - RIREX_LTR 8828 0.0003 (1/2979) 0 * Os_TE_799235 Os_TE_799235 Chr1 13979498 13979497 + RIREX_LTR 8828 0.0003 (1/2987) 0 * Os_TE_799236 Os_TE_799220 Chr1 13970861 13970862 - SZ-5LTR 1223 0.0004 (1/2826) 0 * * Os_TE_799200 Chr1 13960889 13960890 + RIREX_LTR 8828 0.0003 (1/2928) 0 * * Os_TE_799184 Chr1 13949326 13949327 - ORSgTETN00200001 10994 0.0087 (26/2987) 0 * Os_TE_799183 Os_TE_799183 Chr1 13949324 13949323 + SPMLIKE 10989 0.0094 (28/2990) 0 * Os_TE_799184 Os_TE_799180 Chr1 13948654 13948655 + RIREX_LTR 8828 0.0020 (5/2563) 0 * Os_TE_799179 Os_TE_799179 Chr1 13948650 13948649 - RIREX_LTR 8828 0.0023 (6/2569) 0 * Os_TE_799180 Os_TE_799178 Chr1 13948610 13948611 + RETRO2_LTR 12874 0.0197 (50/2539) 0 * Os_TE_799177 Os_TE_799177 Chr1 13948606 13948605 - RETRO1_LTR 8314 0.0187 (47/2519) 0 * Os_TE_799178 Os_TE_799174 Chr1 13947979 13947980 - RETROSAT4_LTR 13504 0.0020 (6/2959) 0 * * Os_TE_799146 Chr1 13940762 13940761 - Cassandra_OS-LTR 764 0.0007 (2/2976) 0 * * Os_TE_799128 Chr1 13935575 13935574 - ORSgTERT00201216 11284 0.0013 (4/2968) 0 * * Os_TE_799083 Chr1 13917240 13917239 + ORSgTEMT01600403 239 0.5997 (1745/2910) 0 * Os_TE_799082 Os_TE_799082 Chr1 13917237 13917238 + ORSgTEMT01601983 238 0.6025 (1766/2931) 0 * Os_TE_799083 Os_TE_799057 Chr1 13906901 13906902 - NDNA1TNA_OS 334 0.3680 (460/1250) 0 * Os_TE_799056 Os_TE_799056 Chr1 13906899 13906898 + NDNA1TNA_OS 334 0.3679 (461/1253) 0 * Os_TE_799057 Os_TE_799048 Chr1 13904834 13904833 + ORSgTEMT00600192 355 0.5898 (1692/2869) 0 * Os_TE_799047 Os_TE_799047 Chr1 13904827 13904828 + ORSgTEMT01700702 154 0.6093 (1820/2987) 0 * Os_TE_799048 Os_TE_799045 Chr1 13904017 13904016 + ORSgTETNOOT00908 242 0.0982 (293/2983) 0 * * Os_TE_799043 Chr1 13902983 13902982 - ORSiTERTOOT00074 4935 0.0003 (1/2998) 0 * * Os_TE_799019 Chr1 13886177 13886178 - TNR3 1536 0.3699 (1099/2971) 0 * Os_TE_799018 Os_TE_799018 Chr1 13886175 13886174 - ENSPM3_OS 10837 0.3681 (1093/2969) 0 * Os_TE_799019 Os_TE_799014 Chr1 13885820 13885819 - RETROSAT5_LTR 13878 0.0013 (4/2997) 0 * * Os_TE_799013 Chr1 13885675 13885676 + COPI2_LTR 4733 0.0003 (1/2994) 0 * * Os_TE_799008 Chr1 13884905 13884904 + MuDR4_OS 7610 0.0540 (159/2942) 0 * * Os_TE_799007 Chr1 13884412 13884413 - NDNA1TNA_OS 334 0.1514 (440/2906) 0 * * Os_TE_798967 Chr1 13853736 13853737 + ORSgTEMT01601934 207 0.1250 (360/2880) 0 * * Os_TE_798953 Chr1 13847723 13847724 - RETROSAT4_LTR 13504 0.1736 (474/2730) 0 * * Os_TE_798941 Chr1 13843858 13843857 + EnSpm-13_OS 11171 0.5478 (1032/1884) 0 * * Os_TE_798933 Chr1 13837603 13837602 - TRUNCATOR2_LTR 2904 0.0003 (1/2916) 0 * * Os_TE_798910 Chr1 13821045 13821046 + TRUNCATOR2_LTR 2904 0.0004 (1/2574) 0 * Os_TE_798909 Os_TE_798909 Chr1 13821041 13821040 - TRUNCATOR2_LTR 2904 0.0012 (3/2555) 0 * Os_TE_798910 Os_TE_798908 Chr1 13820949 13820950 - TRUNCATOR 2918 0.0849 (211/2484) 0 * * Os_TE_798899 Chr1 13818989 13818988 - ORSiTERTOOT00301 9654 0.0012 (1/837) 0 * * Os_TE_798896 Chr1 13818050 13818049 - ORSgTEMT02400179 221 0.1957 (484/2473) 0 * * Os_TE_798887 Chr1 13816684 13816685 - SZ-55_LTR 10318 0.0004 (1/2855) 0 * Os_TE_798886 Os_TE_798886 Chr1 13816680 13816679 + SZ-55_LTR 10318 0.0004 (1/2608) 0 * Os_TE_798887 Os_TE_798883 Chr1 13815510 13815511 - RIREX_LTR 8828 0.1338 (341/2548) 0 * Os_TE_798882 Os_TE_798882 Chr1 13815506 13815505 + RIREX_LTR 8828 0.1332 (338/2538) 0 * Os_TE_798883 Os_TE_798866 Chr1 13810862 13810863 - SZ-37_LTR 12001 0.0010 (1/1049) 0 * * Os_TE_798863 Chr1 13808891 13808892 + ORSiTERTOOT00332 5395 0.0010 (3/2997) 0 * Os_TE_798862 Os_TE_798862 Chr1 13808887 13808886 - ORSiTERTOOT00332 5395 0.0010 (3/2996) 0 * Os_TE_798863 Os_TE_798861 Chr1 13808064 13808065 - COPI2_LTR 4733 0.0626 (110/1758) 0 * Os_TE_798860 Os_TE_798860 Chr1 13808060 13808059 + COPI2_LTR 4733 0.0703 (108/1536) 0 * Os_TE_798861 Os_TE_798857 Chr1 13805015 13805016 + ORSgTETNOOT00908 242 0.1577 (468/2968) 0 * * Os_TE_798852 Chr1 13799622 13799436 - COWARD-3 221 0.6474 (1941/2998) 1 Intact Os_TE_798851 Os_TE_798851 Chr1 13799431 13799622 + COWARD-3 221 0.6475 (1938/2993) 1 Intact Os_TE_798852 Os_TE_798849 Chr1 13796253 13796254 + ORSiTERTOOT00296 5553 0.0007 (2/2984) 0 * Os_TE_798848 Os_TE_798848 Chr1 13796249 13796248 - SC-3_LTR 5748 0.0007 (2/2985) 0 * Os_TE_798849 Os_TE_798840 Chr1 13793721 13793722 - ORSgTEMT01602413 239 0.1256 (373/2970) 0 * * Os_TE_798827 Chr1 13784762 13784763 - TRUNCATOR2_LTR 2904 0.1311 (393/2998) 0 * Os_TE_798826 Os_TE_798826 Chr1 13784758 13784757 + TRUNCATOR2_LTR 2904 0.1306 (386/2955) 0 * Os_TE_798827 Os_TE_798808 Chr1 13774297 13773397 + MUDRN3_OS 903 0.3303 (864/2616) 1 Intact Os_TE_798807 Os_TE_798807 Chr1 13773397 13774297 + MUDRN3_OS 903 0.3438 (912/2653) 1 Intact Os_TE_798808 Os_TE_798800 Chr1 13771118 13771117 + TRUNCATOR 2918 0.0003 (1/2993) 0 * * Os_TE_798799 Chr1 13770723 13770724 - F524 291 0.1679 (476/2835) 0 * * Os_TE_798798 Chr1 13770167 13770168 - ORSgTERT00201216 11284 0.0020 (6/2975) 0 * Os_TE_798797 Os_TE_798797 Chr1 13770163 13770162 - RIRE2_LTR 11306 0.0023 (5/2163) 0 * Os_TE_798798 Os_TE_798796 Chr1 13769999 13770000 - ORSgTEMT00900467 235 0.1976 (480/2429) 0 * * Os_TE_798795 Chr1 13769973 13769821 - UNIQUE 158 0.4116 (1097/2665) 1 Intact Os_TE_798794 Os_TE_798794 Chr1 13769818 13769968 - UNIQUE 158 0.5648 (1102/1951) 1 Intact Os_TE_798795 Os_TE_798793 Chr1 13769787 13769786 - ORSgTEMT01601432 239 0.0005 (1/2028) 0 * * Os_TE_798702 Chr1 13723577 13720600 + TRUNCATOR 2918 0.4445 (945/2126) 1 Intact Os_TE_798698 Os_TE_798698 Chr1 13720595 13723577 - TRUNCATOR 2918 0.8553 (904/1057) 1 Intact Os_TE_798702 Os_TE_798695 Chr1 13719849 13720371 + CLOUD-4 520 0.6808 (1090/1601) 1 Intact * Os_TE_798694 Chr1 13719713 13719714 - TAMI2 254 0.0198 (55/2775) 0 * Os_TE_798693 Os_TE_798693 Chr1 13719705 13719704 - TAMI2 254 0.0178 (49/2756) 0 * Os_TE_798694 Os_TE_798686 Chr1 13716480 13716479 + ORSgTEMT00500476 150 0.0213 (58/2724) 0 * * Os_TE_798684 Chr1 13716051 13716050 + ORSgTEMT01701104 154 0.5159 (1169/2266) 0 * * Os_TE_798679 Chr1 13715727 13715347 - AMYLTP 383 0.3966 (1062/2678) 1 Intact Os_TE_798676 Os_TE_798676 Chr1 13715347 13715726 + AMYLTP 383 0.4001 (1082/2704) 1 Intact Os_TE_798679 Os_TE_798674 Chr1 13714625 13714626 - RIREX_LTR 8828 0.1672 (455/2722) 0 * Os_TE_798673 Os_TE_798673 Chr1 13714621 13714620 + RIREX_LTR 8828 0.1659 (452/2724) 0 * Os_TE_798674 Os_TE_798672 Chr1 13712948 13712947 + TRUNCATOR 2918 0.1468 (366/2494) 0 * Os_TE_798671 Os_TE_798671 Chr1 13712947 13712948 - TRUNCATOR 2918 0.1629 (387/2375) 0 * Os_TE_798672 Os_TE_798669 Chr1 13712901 13712900 - RPO_OS 1983 0.2866 (709/2474) 0 * * Os_TE_798668 Chr1 13712747 13712550 + COWARD-3 221 0.5168 (1372/2655) 1 Intact Os_TE_798667 Os_TE_798667 Chr1 13712549 13712747 - COWARD 200 0.5229 (1380/2639) 1 Intact Os_TE_798668 Os_TE_798665 Chr1 13711839 13711840 - ORSiTERT00100063 7723 0.1925 (444/2306) 0 * Os_TE_798664 Os_TE_798664 Chr1 13711835 13711834 + ORSiTERT00100063 7723 0.1584 (433/2733) 0 * Os_TE_798665 Os_TE_798663 Chr1 13711816 13711817 + COPIA2-LTR_OS 6433 0.0350 (83/2373) 0 * * Os_TE_798632 Chr1 13702978 13702979 + COPI2_LTR 4733 0.0256 (70/2731) 0 * Os_TE_798631 Os_TE_798631 Chr1 13702974 13702973 - COPI2_LTR 4733 0.0385 (70/1816) 0 * Os_TE_798632 Os_TE_798630 Chr1 13702607 13702608 - SZ-5LTR 1223 0.1471 (388/2638) 0 * Os_TE_798629 Os_TE_798629 Chr1 13702605 13702604 + SZ-5LTR 1223 0.1486 (393/2644) 0 * Os_TE_798630 Os_TE_798626 Chr1 13702174 13702173 - RETROSAT2LTR 12796 0.3324 (861/2590) 0 * * Os_TE_798566 Chr1 13664041 13664040 - ORSiTERTOOT00247 2716 0.3259 (494/1516) 0 * * Os_TE_798545 Chr1 13658829 13661970 - RIRE3_LTR 12054 0.7580 (802/1058) 1 Solo_LTR * Os_TE_798526 Chr1 13644905 13644906 - SZ-COM 1308 0.0014 (1/740) 0 * * Os_TE_798520 Chr1 13643121 13651128 - ORSiTERT00100063 7723 0.7605 (1035/1361) 1 Intact * Os_TE_798433 Chr1 13607399 13607398 - STOWAWAY12_OS 312 0.0010 (1/1035) 0 * * Os_TE_798429 Chr1 13607048 13606710 + OLO24 345 0.6403 (1132/1768) 1 Intact * Os_TE_798413 Chr1 13600893 13600894 + TNR2A 152 0.0893 (173/1938) 0 * * Os_TE_798392 Chr1 13594117 13590494 - ORSiTETNOOT00209 3624 0.6773 (764/1128) 1 Intact * Os_TE_798380 Chr1 13586257 13586495 + DITAILA 257 0.5744 (1139/1983) 1 Intact * Os_TE_798373 Chr1 13581947 13581946 + STOWAWAY11_OS 292 0.0003 (1/2987) 0 * * Os_TE_798372 Chr1 13581797 13581798 - CLOUD 734 0.1661 (432/2601) 0 * Os_TE_798371 Os_TE_798371 Chr1 13581789 13581788 - CLOUD 734 0.2745 (440/1603) 0 * Os_TE_798372 Os_TE_798369 Chr1 13581770 13581771 + ORSgTEMT00101457 316 0.1803 (488/2707) 0 * * Os_TE_798368 Chr1 13581711 13581712 + OSTE33 1012 0.0111 (33/2966) 0 * * Os_TE_798364 Chr1 13578521 13578522 + RIRE1_LTR 8322 0.1860 (490/2634) 0 * * Os_TE_798363 Chr1 13577955 13577956 - TRUNCATOR2_LTR 2904 0.1710 (448/2620) 0 * Os_TE_798362 Os_TE_798362 Chr1 13577951 13577950 + ORSiCMCM00100019 2717 0.1679 (440/2621) 0 * Os_TE_798363 Os_TE_798361 Chr1 13577742 13577741 + ORSgTEMT01701663 106 0.1740 (453/2604) 0 * Os_TE_798360 Os_TE_798360 Chr1 13577741 13577742 - STOWAWAY1_OS 149 0.1778 (466/2621) 0 * Os_TE_798361 Os_TE_798357 Chr1 13576268 13576269 - OSTE24 683 0.0230 (68/2962) 0 * Os_TE_798356 Os_TE_798356 Chr1 13576257 13576256 - OSTE24 683 0.0242 (72/2975) 0 * Os_TE_798357 Os_TE_798345 Chr1 13574872 13574871 + RETROSAT2LTR 12796 0.0010 (3/2896) 0 * * Os_TE_798342 Chr1 13573415 13573416 + CASGRANDA 465 0.0264 (79/2988) 0 * Os_TE_798341 Os_TE_798341 Chr1 13573410 13573409 - CASGRANDA 465 0.0268 (80/2988) 0 * Os_TE_798342 Os_TE_798335 Chr1 13570148 13570149 - ORSgTEMT00500578 129 0.2127 (633/2976) 0 * Os_TE_798334 Os_TE_798334 Chr1 13570147 13570146 - ORSgTEMT00502154 143 0.2088 (618/2960) 0 * Os_TE_798335 Os_TE_798331 Chr1 13569926 13569677 - ORSgTEMT00901723 248 0.8018 (2395/2987) 1 Intact Os_TE_798330 Os_TE_798330 Chr1 13569674 13569925 + ORSgTEMT00900210 205 0.8034 (2407/2996) 1 Intact Os_TE_798331 Os_TE_798328 Chr1 13569583 13569584 + INDITTO 263 0.0277 (83/2993) 0 * Os_TE_798327 Os_TE_798327 Chr1 13569581 13569580 - INDITTO 263 0.0274 (82/2994) 0 * Os_TE_798328 Os_TE_798326 Chr1 13569573 13569574 - COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * * Os_TE_798324 Chr1 13569428 13569429 + INDITTO 263 0.0281 (84/2989) 0 * Os_TE_798323 Os_TE_798323 Chr1 13569426 13569425 - INDITTO 263 0.0274 (82/2991) 0 * Os_TE_798324 Os_TE_798321 Chr1 13569221 13569222 + ORSgTEMT01602181 239 0.1322 (390/2951) 0 * * Os_TE_798319 Chr1 13568610 13568611 + ORSgTETNOOT00908 242 0.0342 (102/2983) 0 * * Os_TE_798318 Chr1 13567619 13567489 - ORSgTEMT01701888 142 0.7467 (2199/2945) 1 Intact * Os_TE_798310 Chr1 13564093 13564092 + ORSiCMCM00100019 2717 0.0007 (2/2973) 0 * * Os_TE_798286 Chr1 13559066 13559065 - RIRE2_LTR 11306 0.0817 (171/2093) 0 * * Os_TE_798280 Chr1 13558171 13558172 + MERMITEA 1710 0.1545 (397/2570) 0 * * Os_TE_798275 Chr1 13557381 13557382 + ORSgTETNOOT00908 242 0.0047 (14/2980) 0 * Os_TE_798274 Os_TE_798274 Chr1 13557379 13557378 - ORSgTETNOOT00908 242 0.0047 (14/2956) 0 * Os_TE_798275 Os_TE_798272 Chr1 13554282 13554283 + SPMLIKE 10989 0.0009 (2/2261) 0 * * Os_TE_798269 Chr1 13553569 13553568 + RIRE1_LTR 8322 0.0020 (5/2543) 0 * * Os_TE_798261 Chr1 13550526 13550527 + ORSgTEMT01900027 302 0.1550 (396/2555) 0 * Os_TE_798260 Os_TE_798260 Chr1 13550525 13550524 + ORSgTEMT01900027 302 0.1589 (409/2574) 0 * Os_TE_798261 Os_TE_798258 Chr1 13550290 13549925 - ORSgTEMT04800063 360 0.8417 (2207/2622) 1 Intact Os_TE_798256 Os_TE_798256 Chr1 13549924 13550290 + ORSgTEMT04800085 366 0.8399 (2204/2624) 1 Intact Os_TE_798258 Os_TE_798253 Chr1 13548714 13548715 - RIRE2_LTR 11306 0.0004 (1/2593) 0 * Os_TE_798252 Os_TE_798252 Chr1 13548710 13548709 - ORSgTERT00201216 11284 0.0004 (1/2592) 0 * Os_TE_798253 Os_TE_798226 Chr1 13539317 13539318 + ORSgTETNOOT00908 242 0.1804 (471/2611) 0 * * Os_TE_798225 Chr1 13539291 13539292 - ORSgTEMT01900052 340 0.0058 (15/2607) 0 * * Os_TE_798222 Chr1 13538674 13538675 - STOWAWAY51_OS 246 0.0004 (1/2787) 0 * * Os_TE_798212 Chr1 13537235 13537236 + TRUNCATOR2_LTR 2904 0.0139 (41/2951) 0 * * Os_TE_798189 Chr1 13528759 13528760 - TRUNCATOR2_LTR 2904 0.0860 (257/2988) 0 * Os_TE_798188 Os_TE_798188 Chr1 13528755 13528754 + TRUNCATOR2_LTR 2904 0.0811 (241/2971) 0 * Os_TE_798189 Os_TE_798184 Chr1 13521884 13521883 - SC-3_LTR 5748 0.0510 (153/2998) 0 * * Os_TE_798183 Chr1 13521866 13521865 - ORSgTEMT01601432 239 0.0051 (15/2956) 0 * * Os_TE_798181 Chr1 13520113 13520114 + RPO_OS 1983 0.0017 (5/2994) 0 * * Os_TE_798175 Chr1 13518940 13518941 - ORSgTEMT02400167 203 0.0324 (96/2965) 0 * * Os_TE_798161 Chr1 13514991 13514992 - ORSgTEMT02000047 197 0.0007 (2/2982) 0 * * Os_TE_798146 Chr1 13506978 13506977 + SEVERIN-2 1952 0.1704 (506/2970) 0 * * Os_TE_798083 Chr1 13475890 13475889 - ORSgTEMT01601493 303 0.0003 (1/2866) 0 * * Os_TE_798078 Chr1 13475459 13475460 - MPING 430 0.0017 (5/2907) 0 * Os_TE_798077 Os_TE_798077 Chr1 13475457 13475456 + MPING 430 0.0011 (2/1805) 0 * Os_TE_798078 Os_TE_798076 Chr1 13475373 13475372 - INDITTO 263 0.0128 (38/2963) 0 * Os_TE_798075 Os_TE_798075 Chr1 13475372 13475373 + ORSgTETNOOT02316 263 0.0129 (38/2945) 0 * Os_TE_798076 Os_TE_798071 Chr1 13474024 13473806 - ORSgTEMT00101174 225 0.6330 (1854/2929) 1 Intact * Os_TE_798062 Chr1 13470422 13470421 - ORSgTEMT01600639 228 0.0014 (4/2932) 0 * Os_TE_798061 Os_TE_798061 Chr1 13470419 13470420 - ORSgTEMT01601208 238 0.0017 (5/2945) 0 * Os_TE_798062 Os_TE_798059 Chr1 13470063 13469931 - ORSgTETNOOT01930 140 0.6203 (1854/2989) 1 Intact * Os_TE_798052 Chr1 13460471 13460470 + TRUNCATOR2_LTR 2904 0.2596 (337/1298) -1 * * Os_TE_798051 Chr1 13460326 13460327 - ORSgTERT00201216 11284 0.0039 (7/1802) 0 * Os_TE_798050 Os_TE_798050 Chr1 13460322 13460321 - RIRE2_LTR 11306 0.0033 (6/1801) 0 * Os_TE_798051 Os_TE_798046 Chr1 13459524 13459525 + ORSiCMCM00100019 2717 0.2257 (673/2982) 0 * * Os_TE_798031 Chr1 13445296 13443874 + MERMITEB 1610 0.7854 (1867/2377) 1 Intact Os_TE_798024 Os_TE_798024 Chr1 13443874 13445296 - MERMITEB 1610 0.7407 (1800/2430) 1 Intact Os_TE_798031 Os_TE_798023 Chr1 13443807 13443806 - STOWAWAY17_OS 259 0.0238 (45/1887) 0 * Os_TE_798022 Os_TE_798022 Chr1 13443806 13443807 + ORSgTETNOOT02577 232 0.3252 (875/2691) 0 * Os_TE_798023 Os_TE_798021 Chr1 13442203 13442202 - STOLAB 312 0.0017 (5/2987) 0 * * Os_TE_798020 Chr1 13441197 13441198 + HELITRON8_OS 8831 0.0142 (42/2954) 0 * * Os_TE_798015 Chr1 13438754 13438753 + ORSgTETNOOT01690 244 0.0017 (4/2337) 0 * * Os_TE_798013 Chr1 13437615 13437616 + COPI2_LTR 4733 0.0021 (5/2384) 0 * * Os_TE_797996 Chr1 13435327 13435328 + MUDRN5_OS 374 0.0004 (1/2351) 0 * Os_TE_797995 Os_TE_797995 Chr1 13435317 13435316 - MUDRN5_OS 374 0.0004 (1/2347) 0 * Os_TE_797996 Os_TE_797988 Chr1 13434503 13434502 - ORSgTETNOOT02000 263 0.2661 (503/1890) 0 * * Os_TE_797983 Chr1 13433080 13433298 - ORSgTEMT00901138 254 0.8276 (1814/2192) 1 Intact * Os_TE_797978 Chr1 13432336 13432576 - ORSgTEMT01400019 216 0.7764 (1795/2312) 1 Intact * Os_TE_797974 Chr1 13431987 13431799 - ORSgTETNOOT01534 208 0.7985 (1811/2268) 1 Intact Os_TE_797973 Os_TE_797973 Chr1 13431794 13431981 - ORSgTETNOOT01534 208 0.7804 (1809/2318) 1 Intact Os_TE_797974 Os_TE_797972 Chr1 13431753 13431754 + CLOUD-7 495 0.0004 (1/2324) 0 * * Os_TE_797967 Chr1 13430243 13430242 - TYPEM 227 0.0027 (5/1823) 0 * * Os_TE_797966 Chr1 13430138 13430139 + TELIA 141 0.2252 (531/2358) 0 * * Os_TE_797964 Chr1 13429875 13428434 + DS-RICE4N 715 0.5937 (1378/2321) 1 Intact Os_TE_797963 Os_TE_797963 Chr1 13428434 13429875 - DS-RICE2N 613 0.5943 (1406/2366) 1 Intact Os_TE_797964 Os_TE_797962 Chr1 13428250 13428249 - FOCUS 257 0.1902 (456/2398) 0 * * Os_TE_797957 Chr1 13426477 13426478 - TNR3 1536 0.1776 (416/2343) 0 * Os_TE_797956 Os_TE_797956 Chr1 13426475 13426474 - ENSPM3_OS 10837 0.2039 (487/2389) 0 * Os_TE_797957 Os_TE_797950 Chr1 13425034 13425293 - ORSgTEMT00901723 248 0.7322 (1408/1923) 1 Intact * Os_TE_797949 Chr1 13424951 13424950 - MUDRN3_OS 903 0.0033 (6/1843) 0 * * Os_TE_797948 Chr1 13424689 13424688 + RIREX_LTR 8828 0.0011 (2/1822) 0 * * Os_TE_797941 Chr1 13421311 13421312 + MUDRN3_OS 903 0.1023 (236/2307) 0 * Os_TE_797940 Os_TE_797940 Chr1 13421303 13421302 + MUDRN3_OS 903 0.0950 (200/2106) 0 * Os_TE_797941 Os_TE_797931 Chr1 13420150 13420151 - RETRO1_LTR 8314 0.0160 (34/2122) 0 * * Os_TE_797917 Chr1 13418371 13418370 + ORSgTEMT00800058 376 0.0004 (1/2775) 0 * * Os_TE_797866 Chr1 13396441 13396442 + SC-10_LTR 4920 0.0008 (2/2354) 0 * * Os_TE_797846 Chr1 13387986 13387987 - TRUNCATOR 2918 0.0123 (36/2936) 0 * * Os_TE_797840 Chr1 13386325 13386326 + SZ-22_LTR 4403 0.0300 (89/2970) 0 * * Os_TE_797828 Chr1 13382911 13382910 + TRUNCATOR 2918 0.0003 (1/2941) 0 * * Os_TE_797822 Chr1 13381658 13381657 - RIREX_LTR 8828 0.0105 (30/2849) 0 * * Os_TE_797790 Chr1 13373968 13373969 + RETROSAT4_LTR 13504 0.0008 (2/2394) -1 * * Os_TE_797788 Chr1 13372654 13372655 - RETROSAT2LTRA 3112 0.0105 (31/2966) 0 * Os_TE_797787 Os_TE_797787 Chr1 13372650 13372649 + RETROSAT2LTR 12796 0.0091 (27/2962) 0 * Os_TE_797788 Os_TE_797783 Chr1 13368116 13368117 - RIRE5-LTR_OS 6427 0.0713 (213/2987) 0 * Os_TE_797782 Os_TE_797782 Chr1 13368109 13368108 + RIRE5-LTR_OS 6427 0.0655 (195/2978) 0 * Os_TE_797783 Os_TE_797778 Chr1 13366245 13366246 - ORSgTETN00200001 10994 0.0091 (27/2976) 0 * Os_TE_797777 Os_TE_797777 Chr1 13366243 13366242 + SPMLIKE 10989 0.0114 (34/2976) 0 * Os_TE_797778 Os_TE_797771 Chr1 13365408 13365409 - TRUNCATOR 2918 0.0218 (65/2976) 0 * * Os_TE_797758 Chr1 13361285 13361286 - COPI2_LTR 4733 0.0091 (27/2968) 0 * * Os_TE_797755 Chr1 13360701 13360702 + COPIA2-LTR_OS 6433 0.0030 (9/2985) 0 * * Os_TE_797754 Chr1 13359603 13359604 - DS-RICE2N 613 0.0030 (9/2985) 0 * Os_TE_797753 Os_TE_797753 Chr1 13359596 13359595 + DS-RICE2N 613 0.0023 (7/2985) 0 * Os_TE_797754 Os_TE_797743 Chr1 13355631 13355632 - GYPSY-A_LTR 8951 0.0003 (1/2989) 0 * Os_TE_797742 Os_TE_797742 Chr1 13355627 13355626 + SZ-40LTR 2465 0.0003 (1/2988) 0 * Os_TE_797743 Os_TE_797723 Chr1 13351993 13351992 - TRUNCATOR 2918 0.0907 (185/2040) 0 * * Os_TE_797713 Chr1 13348750 13348751 - COPIO_LTR 11693 0.0010 (3/2994) 0 * Os_TE_797712 Os_TE_797712 Chr1 13348746 13348745 + COPIO_LTR 11693 0.0010 (3/2993) 0 * Os_TE_797713 Os_TE_797701 Chr1 13341884 13341885 - MDR2 6967 0.0003 (1/2983) 0 * Os_TE_797700 Os_TE_797700 Chr1 13341876 13341875 - MDR2 6967 0.0003 (1/2978) 0 * Os_TE_797701 Os_TE_797695 Chr1 13341672 13341671 + STOWAWAY51_OS 246 0.0005 (1/2058) 0 * Os_TE_797694 Os_TE_797694 Chr1 13341666 13341667 - STOWAWAY51_OS 246 0.0007 (2/2817) 0 * Os_TE_797695 Os_TE_797677 Chr1 13337668 13337669 + COPI2_LTR 4733 0.0003 (1/2998) 0 * * Os_TE_797675 Chr1 13335936 13335935 - STOWAWAY43_OS 233 0.0004 (1/2602) -1 * * Os_TE_797659 Chr1 13331052 13331051 + DS-RICE3N 525 0.1120 (305/2723) 0 * * Os_TE_797655 Chr1 13330132 13330131 + ORSgTEMT06100010 269 0.0132 (36/2725) 0 * * Os_TE_797649 Chr1 13327666 13327667 + SZ-40LTR 2465 0.0508 (151/2972) 0 * Os_TE_797648 Os_TE_797648 Chr1 13327662 13327661 - GYPSY-A_LTR 8951 0.0541 (161/2978) 0 * Os_TE_797649 Os_TE_797629 Chr1 13314327 13314326 - TRUNCATOR2_LTR 2904 0.0007 (2/2968) 0 * * Os_TE_797614 Chr1 13308478 13308477 - SZ-22_LTR 4403 0.0007 (2/2995) 0 * * Os_TE_797590 Chr1 13297662 13297663 + SC-8_LTR 4951 0.0017 (5/2979) 0 * Os_TE_797589 Os_TE_797589 Chr1 13297658 13297657 - SC-8_LTR 4951 0.0017 (5/2972) 0 * Os_TE_797590 Os_TE_797585 Chr1 13295064 13295063 - RETROSAT2LTR 12796 0.0127 (38/2988) 0 * * Os_TE_797551 Chr1 13279050 13279051 - ORSgTEMT02400179 221 0.0038 (11/2914) 0 * Os_TE_797550 Os_TE_797550 Chr1 13279049 13279048 - TYPEM 227 0.0034 (10/2908) 0 * Os_TE_797551 Os_TE_797548 Chr1 13276443 13276444 + SC-8_LTR 4951 0.0003 (1/2988) 0 * Os_TE_797547 Os_TE_797547 Chr1 13276439 13276438 - SC-8_LTR 4951 0.0003 (1/2989) 0 * Os_TE_797548 Os_TE_797540 Chr1 13270456 13270053 + ORSiTEMT00300001 383 0.2868 (848/2957) 1 Intact Os_TE_797538 Os_TE_797538 Chr1 13270052 13270445 + ORSgTEMT00300122 416 0.2921 (869/2975) 1 Intact Os_TE_797540 Os_TE_797535 Chr1 13269056 13269057 + ORSgTEMT01602141 239 0.7574 (2163/2856) 0 * * Os_TE_797531 Chr1 13265850 13265851 + RIREX_LTR 8828 0.0003 (1/2969) 0 * Os_TE_797530 Os_TE_797530 Chr1 13265846 13265845 - RIREX_LTR 8828 0.0003 (1/2962) 0 * Os_TE_797531 Os_TE_797529 Chr1 13264902 13264903 + TWIFBIG 3567 0.0028 (8/2829) 0 * * Os_TE_797501 Chr1 13253061 13253060 + ORSgTETNOOT00908 242 0.0124 (37/2972) 0 * * Os_TE_797486 Chr1 13240424 13240423 + SZ-19LTR 1513 0.0006 (1/1645) 0 * * Os_TE_797479 Chr1 13237843 13237844 - SZ-67LTR 1540 0.0008 (1/1293) 0 * * Os_TE_797477 Chr1 13236590 13236589 + TRUNCATOR 2918 0.1525 (455/2983) 0 * * Os_TE_797433 Chr1 13219410 13219411 - MuDR4_OS 7610 0.0003 (1/2990) 0 * Os_TE_797432 Os_TE_797432 Chr1 13219402 13219401 - MuDR4_OS 7610 0.0003 (1/2988) 0 * Os_TE_797433 Os_TE_797417 Chr1 13210217 13210216 + ORSgTEMT01602029 239 0.0665 (195/2931) 0 * * Os_TE_797415 Chr1 13209937 13209938 - ORSgTEMT01601834 234 0.0743 (219/2947) 0 * * Os_TE_797414 Chr1 13209693 13209694 - MuDR3_OS 8604 0.0017 (5/2913) 0 * Os_TE_797413 Os_TE_797413 Chr1 13209684 13209683 - MuDR3_OS 8604 0.0034 (10/2922) 0 * Os_TE_797414 Os_TE_797403 Chr1 13205674 13204232 + DS-RICE4N 715 0.2590 (708/2734) 1 Intact Os_TE_797401 Os_TE_797401 Chr1 13204232 13205674 - DS-RICE2N 613 0.2440 (713/2922) 1 Intact Os_TE_797403 Os_TE_797397 Chr1 13201732 13201245 - OSTE20 496 0.1561 (206/1320) 1 Intact * Os_TE_797395 Chr1 13199881 13199880 - RIREX_LTR 8828 0.0004 (1/2755) 0 * * Os_TE_797393 Chr1 13198363 13198364 + DS-RICE4N 715 0.0073 (20/2724) 0 * * Os_TE_797319 Chr1 13159978 13159979 - OSTE22 2037 0.0022 (2/928) 0 * * Os_TE_797287 Chr1 13143714 13143715 + COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_797286 Os_TE_797286 Chr1 13143710 13143709 - COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * Os_TE_797287 Os_TE_797270 Chr1 13135633 13135634 - ORSiTERT00200154 9386 0.0076 (21/2759) 0 * Os_TE_797269 Os_TE_797269 Chr1 13135627 13135626 + TRUNCATOR 2918 0.0076 (21/2759) 0 * Os_TE_797270 Os_TE_797267 Chr1 13133192 13133193 - TRUNCATOR2_LTR 2904 0.4325 (1189/2749) 0 * Os_TE_797266 Os_TE_797266 Chr1 13133188 13133187 + ORSiCMCM00100019 2717 0.4275 (1171/2739) 0 * Os_TE_797267 Os_TE_797237 Chr1 13126172 13126507 + NDNA1TNA_OS 334 0.2583 (748/2896) 0.94 Intact * Os_TE_797227 Chr1 13123386 13123387 + ORSiTERTOOT00226 792 0.0038 (10/2653) 0 * Os_TE_797226 Os_TE_797226 Chr1 13123382 13123381 - SZ-22_LTR 4403 0.0038 (10/2650) 0 * Os_TE_797227 Os_TE_797223 Chr1 13122188 13122189 + COPI2_LTR 4733 0.2523 (692/2743) 0 * Os_TE_797222 Os_TE_797222 Chr1 13122184 13122183 - COPI2_LTR 4733 0.2489 (679/2728) 0 * Os_TE_797223 Os_TE_797217 Chr1 13120904 13120905 - ORSgTEMT01601696 238 0.0079 (21/2654) 0 * * Os_TE_797028 Chr1 12997668 12997667 - RETRO2_LTR 12874 0.0007 (1/1382) 0 * * Os_TE_797005 Chr1 12988761 12988760 - CACTA-J 1159 0.0274 (25/913) 0 * * Os_TE_796974 Chr1 12981585 12981586 - RETRO2_LTR 12874 0.0127 (38/2993) 0 * Os_TE_796973 Os_TE_796973 Chr1 12981581 12981580 + ORSgTERTOOT00009 12852 0.0130 (39/2991) 0 * Os_TE_796974 Os_TE_796970 Chr1 12980463 12980462 + TYPEU4 402 0.0097 (29/2991) 0 * * Os_TE_796931 Chr1 12941508 12941507 - ORSgTEMT01701458 154 0.0013 (4/2984) 0 * Os_TE_796930 Os_TE_796930 Chr1 12941501 12941502 + STOWAWAY50_OS 174 0.0013 (4/2984) 0 * Os_TE_796931 Os_TE_796900 Chr1 12934871 12934872 - RIREX_LTR 8828 0.0127 (38/2996) 0 * Os_TE_796899 Os_TE_796899 Chr1 12934867 12934866 + RIREX_LTR 8828 0.0123 (37/2997) 0 * Os_TE_796900 Os_TE_796898 Chr1 12934173 12934172 - MIDWAY 985 0.0003 (1/2987) 0 * * Os_TE_796886 Chr1 12930529 12930528 + ORSgTETNOOT00908 242 0.0004 (1/2544) -1 * * Os_TE_796882 Chr1 12929086 12929087 + ORSiTERTOOT00226 792 0.0003 (1/2984) 0 * Os_TE_796881 Os_TE_796881 Chr1 12929082 12929081 - SZ-22_LTR 4403 0.0003 (1/2987) 0 * Os_TE_796882 Os_TE_796877 Chr1 12927956 12927957 - ORSiTETNOOT00216 3569 0.1415 (410/2898) 0 * * Os_TE_796874 Chr1 12927223 12927224 - CACTA-G1 797 0.0144 (36/2494) 0 * Os_TE_796873 Os_TE_796873 Chr1 12927221 12927220 - EnSpm-12_OS 12603 0.0120 (35/2918) 0 * Os_TE_796874 Os_TE_796867 Chr1 12926214 12926215 - RIREX_LTR 8828 0.0034 (9/2621) -1 * Os_TE_796866 Os_TE_796866 Chr1 12926210 12926209 + RIREX_LTR 8828 0.0031 (8/2598) -1 * Os_TE_796867 Os_TE_796854 Chr1 12920100 12920099 + ORSgTEMT00100272 356 0.0017 (5/2993) 0 * * Os_TE_796833 Chr1 12899069 12899070 - COPI2_LTR 4733 0.3786 (1098/2900) 0 * * Os_TE_796831 Chr1 12896529 12896530 - COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_796830 Os_TE_796830 Chr1 12896525 12896524 + COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_796831 Os_TE_796799 Chr1 12884430 12884431 + SINE9_OS 293 0.0126 (37/2945) 0 * Os_TE_796798 Os_TE_796798 Chr1 12884416 12884415 - SINE9_OS 293 0.0122 (36/2949) 0 * Os_TE_796799 Os_TE_796795 Chr1 12884061 12884062 + COPIA2-LTR_OS 6433 0.0003 (1/2971) 0 * Os_TE_796794 Os_TE_796794 Chr1 12884057 12884056 - COPIA2-LTR_OS 6433 0.0003 (1/2965) 0 * Os_TE_796795 Os_TE_796780 Chr1 12880670 12880671 + F569 228 0.0128 (37/2880) 0 * * Os_TE_796774 Chr1 12878597 12878598 + ORSgTEMT00100531 325 0.0121 (36/2987) 0 * * Os_TE_796773 Chr1 12877830 12877831 + CACTA-H 1152 0.0088 (26/2966) 0 * Os_TE_796772 Os_TE_796772 Chr1 12877828 12877827 - CACTA-M 1129 0.0098 (29/2965) 0 * Os_TE_796773 Os_TE_796753 Chr1 12870101 12870102 + MPING 430 0.0003 (1/2913) 0 * Os_TE_796752 Os_TE_796752 Chr1 12870099 12870098 - MPING 430 0.0003 (1/2899) 0 * Os_TE_796753 Os_TE_796738 Chr1 12868070 12868071 - NDNA1TNA_OS 334 0.0004 (1/2658) 0 * * Os_TE_796735 Chr1 12860730 12867171 + COPIA2-LTR_OS 6433 0.2295 (671/2924) 1 Intact * Os_TE_796723 Chr1 12856333 12856334 - SZ-40LTR 2465 0.0007 (2/2973) 0 * * Os_TE_796721 Chr1 12856106 12856107 - STOWAWAY51_OS 246 0.0007 (2/2992) 0 * * Os_TE_796719 Chr1 12854672 12854671 + OSTE33 1012 0.0084 (25/2972) 0 * * Os_TE_796712 Chr1 12851099 12851100 - SC-3_LTR 5748 0.0007 (2/2995) 0 * Os_TE_796711 Os_TE_796711 Chr1 12851095 12851094 + ORSiTERTOOT00296 5553 0.0007 (2/2996) 0 * Os_TE_796712 Os_TE_796703 Chr1 12844733 12844734 - TRUNCATOR2_LTR 2904 0.0022 (2/925) 0 * * Os_TE_796701 Chr1 12841304 12844715 + TRUNCATOR2_LTR 2904 0.2800 (536/1914) 1 Intact * Os_TE_796586 Chr1 12777387 12777386 - RIRE3_LTR 12054 0.0023 (7/2999) 0 * * Os_TE_796583 Chr1 12775417 12775416 - CACTA-I 1124 0.1595 (469/2941) 0 * Os_TE_796582 Os_TE_796582 Chr1 12775416 12775417 + CACTA-B 1103 0.1565 (459/2932) 0 * Os_TE_796583 Os_TE_796581 Chr1 12775002 12775003 - RETROSAT3_LTR 11537 0.0093 (28/2997) 0 * * Os_TE_796555 Chr1 12767688 12767687 + TRUNCATOR 2918 0.2982 (892/2991) 0 * Os_TE_796554 Os_TE_796554 Chr1 12767687 12767688 - TRUNCATOR 2918 0.2888 (856/2964) 0 * Os_TE_796555 Os_TE_796536 Chr1 12760181 12760180 - MuDR4_OS 7610 0.0127 (38/2991) 0 * * Os_TE_796505 Chr1 12749568 12749569 - SZ-9LTR 965 0.0003 (1/2981) 0 * Os_TE_796504 Os_TE_796504 Chr1 12749564 12749563 + SZ-9LTR 965 0.0003 (1/2974) 0 * Os_TE_796505 Os_TE_796500 Chr1 12744418 12744419 + COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_796499 Os_TE_796499 Chr1 12744414 12744413 - COPIA2-LTR_OS 6433 0.0003 (1/2988) 0 * Os_TE_796500 Os_TE_796491 Chr1 12738735 12738734 - SZ-40LTR 2465 0.3187 (951/2984) 0 * * Os_TE_796489 Chr1 12738599 12738598 - TYPEM 227 0.0011 (1/925) 0 * * Os_TE_796487 Chr1 12738586 12738587 - SZ-67LTR 1540 0.6900 (2005/2906) 0 * Os_TE_796486 Os_TE_796486 Chr1 12738583 12738582 + SZ-67LTR 1540 0.5939 (1410/2374) 0 * Os_TE_796487 Os_TE_796485 Chr1 12738521 12738520 - SZ-67LTR 1540 0.0029 (8/2720) 0 * * Os_TE_796474 Chr1 12732517 12732518 + INDITTO 263 0.0204 (61/2993) 0 * Os_TE_796473 Os_TE_796473 Chr1 12732515 12732514 - INDITTO 263 0.0204 (61/2996) 0 * Os_TE_796474 Os_TE_796467 Chr1 12731227 12731228 - TYPEM 227 0.0003 (1/2992) 0 * * Os_TE_796458 Chr1 12718710 12724834 - RIREX_LTR 8828 0.2768 (825/2980) 1 Intact * Os_TE_796447 Chr1 12717296 12714252 + RETROSAT2LTR 12796 0.2505 (646/2579) 1 Solo_LTR Os_TE_796443 Os_TE_796443 Chr1 12714250 12717296 - RETROSAT2LTR 12796 0.3056 (850/2781) 0.86 Solo_LTR Os_TE_796447 Os_TE_796439 Chr1 12710260 12709915 + NDNA2TNA_OS 346 0.2800 (791/2825) 1 Intact Os_TE_796435 Os_TE_796435 Chr1 12709915 12710260 - NDNA2TNA_OS 346 0.2985 (808/2707) 1 Intact Os_TE_796439 Os_TE_796430 Chr1 12702958 12702959 - RIREX_LTR 8828 0.0003 (1/2983) 0 * * Os_TE_796422 Chr1 12700519 12700518 + Cassandra_OS-LTR 764 0.0003 (1/2970) 0 * * Os_TE_796418 Chr1 12700225 12700226 + INDITTO 263 0.0070 (21/2988) 0 * * Os_TE_796416 Chr1 12700077 12700078 - COPI2_LTR 4733 0.0003 (1/2997) 0 * Os_TE_796415 Os_TE_796415 Chr1 12700073 12700072 + COPI2_LTR 4733 0.0003 (1/2985) 0 * Os_TE_796416 Os_TE_796411 Chr1 12697765 12697766 + OLO24 345 0.0017 (5/2977) 0 * * Os_TE_796406 Chr1 12695551 12695552 + RIREX_LTR 8828 0.0134 (40/2983) 0 * * Os_TE_796366 Chr1 12683856 12683857 - AMYLTP 383 0.0575 (169/2939) 0 * Os_TE_796365 Os_TE_796365 Chr1 12683848 12683847 + AMYLTP 383 0.0540 (159/2945) 0 * Os_TE_796366 Os_TE_796364 Chr1 12683807 12683808 - AMYLTP 383 0.1795 (534/2975) 0 * Os_TE_796363 Os_TE_796363 Chr1 12683799 12683798 + AMYLTP 383 0.1739 (516/2967) 0 * Os_TE_796364 Os_TE_796362 Chr1 12683798 12683799 + AMYLTP 383 0.1795 (535/2981) 0 * * Os_TE_796350 Chr1 12680238 12680239 + COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * * Os_TE_796349 Chr1 12680079 12680078 - RETROSAT2LTR 12796 0.0003 (1/2995) 0 * * Os_TE_796311 Chr1 12662247 12662246 + ORSgTEMT01900027 302 0.0017 (5/2982) 0 * Os_TE_796310 Os_TE_796310 Chr1 12662246 12662247 - TYPEH 309 0.0017 (5/2988) 0 * Os_TE_796311 Os_TE_796301 Chr1 12659850 12659851 + RETRO2_LTR 12874 0.0452 (135/2984) 0 * Os_TE_796300 Os_TE_796300 Chr1 12659846 12659845 - RETRO2_LTR 12874 0.0472 (141/2990) 0 * Os_TE_796301 Os_TE_796291 Chr1 12653226 12653225 + STOWAWAY15-2_OS 145 0.0017 (5/2960) 0 * * Os_TE_796283 Chr1 12644076 12644075 + ORSgTEMT01700637 157 0.7188 (2088/2905) 0 * * Os_TE_796281 Chr1 12643219 12643043 - ORSgTETNOOT01534 208 0.3471 (818/2357) 1 Intact Os_TE_796280 Os_TE_796280 Chr1 12643043 12643212 - COWARD 200 0.3176 (820/2582) 1 Intact Os_TE_796281 Os_TE_796270 Chr1 12634719 12633979 - CLOUD 734 0.5188 (828/1596) 1 Intact * Os_TE_796241 Chr1 12617697 12617696 - COWARD 200 0.0012 (2/1611) 0 * * Os_TE_796208 Chr1 12586475 12586474 - COWARD-3 221 0.7335 (2185/2979) 0 * * Os_TE_796202 Chr1 12584443 12584442 - GAIJIN 147 0.7315 (2185/2987) 0 * Os_TE_796201 Os_TE_796201 Chr1 12584442 12584443 + ORSgTEMT00501935 151 0.7332 (2196/2995) 0 * Os_TE_796202 Os_TE_796199 Chr1 12583991 12583990 - ORSgTEMT00500110 151 0.7303 (2183/2989) 0 * * Os_TE_796195 Chr1 12579893 12579892 - OSTE33 1012 0.6821 (1985/2910) 0 * * Os_TE_796187 Chr1 12576166 12576167 + ORSgTEMT01400025 210 0.5658 (1521/2688) 0 * * Os_TE_796165 Chr1 12570654 12570655 - SZ-44LTR 1408 0.1292 (387/2996) 0 * Os_TE_796164 Os_TE_796164 Chr1 12570650 12570649 + SZ-29LTR 1393 0.1265 (378/2989) 0 * Os_TE_796165 Os_TE_796159 Chr1 12568397 12568396 + ORSgTEMT01701858 154 0.0401 (119/2968) 0 * Os_TE_796158 Os_TE_796158 Chr1 12568383 12568384 + STOWAWAY1_OS 149 0.0383 (111/2900) 0 * Os_TE_796159 Os_TE_796157 Chr1 12568289 12568127 - COWARD-3 221 0.2679 (777/2900) 1 Intact Os_TE_796156 Os_TE_796156 Chr1 12568127 12568284 + COWARD-3 221 0.2701 (791/2929) 1 Intact Os_TE_796157 Os_TE_796154 Chr1 12567593 12567592 + ORSgTEMT00500201 140 0.0382 (114/2984) 0 * Os_TE_796153 Os_TE_796153 Chr1 12567592 12567593 - ORSgTEMT00501447 126 0.0372 (111/2984) 0 * Os_TE_796154 Os_TE_796148 Chr1 12566109 12566108 - ORSgTEMT00501204 149 0.6978 (2071/2968) 0 * Os_TE_796147 Os_TE_796147 Chr1 12566108 12566109 + ORSgTEMT00501441 144 0.7131 (1988/2788) 0 * Os_TE_796148 Os_TE_796135 Chr1 12563023 12563024 + ORSgTEMT01701356 184 0.7213 (2052/2845) 0 * * Os_TE_796125 Chr1 12561177 12561178 - OSTE15 1168 0.0424 (115/2713) 0 * * Os_TE_796123 Chr1 12560485 12560484 - ORSgTEMT01400022 212 0.6919 (2023/2924) 0 * Os_TE_796122 Os_TE_796122 Chr1 12560479 12560480 + ORSgTEMT01400032 215 0.5956 (1311/2201) 0 * Os_TE_796123 Os_TE_796104 Chr1 12553749 12555145 + RIRE1_LTR 8322 0.8880 (848/955) 1 Solo_LTR * Os_TE_796100 Chr1 12552575 12552576 - AMYLTP 383 0.6937 (2056/2964) 0 * * Os_TE_796099 Chr1 12552047 12552046 - ORSgTEMT01400014 209 0.0375 (109/2903) 0 * Os_TE_796098 Os_TE_796098 Chr1 12552046 12552047 + STOWAWAY9_OS 235 0.1144 (107/935) 0 * Os_TE_796099 Os_TE_796094 Chr1 12550519 12550776 + ORSgTETNOOT00792 273 0.3184 (914/2871) 1 Intact * Os_TE_796088 Chr1 12547988 12547989 + GYPSY-A_LTR 8951 0.0453 (135/2979) 0 * Os_TE_796087 Os_TE_796087 Chr1 12547984 12547983 - GYPSY-A_LTR 8951 0.0460 (137/2976) 0 * Os_TE_796088 Os_TE_796062 Chr1 12519152 12519151 - ORSgTEMT00300008 396 0.0348 (104/2988) 0 * * Os_TE_796061 Chr1 12517722 12514346 + TRUNCATOR2_LTR 2904 0.8303 (2407/2899) 1 Intact Os_TE_796050 Os_TE_796050 Chr1 12514346 12517722 - TRUNCATOR2_LTR 2904 0.8380 (2488/2969) 1 Intact Os_TE_796061 Os_TE_796038 Chr1 12510645 12510646 - COPI2_LTR 4733 0.0004 (1/2846) 0 * Os_TE_796037 Os_TE_796037 Chr1 12510641 12510640 + COPI2_LTR 4733 0.0003 (1/2858) 0 * Os_TE_796038 Os_TE_796025 Chr1 12506394 12506393 + RETRO2_LTR 12874 0.0692 (207/2990) 0 * * Os_TE_796023 Chr1 12505323 12505324 - RETRO1_LTR 8314 0.0682 (204/2992) 0 * * Os_TE_796008 Chr1 12495643 12495644 - SPMLIKE 10989 0.0147 (36/2446) 0 * Os_TE_796007 Os_TE_796007 Chr1 12495641 12495640 + SPMLIKE 10989 0.0148 (36/2433) 0 * Os_TE_796008 Os_TE_795980 Chr1 12473894 12473895 - TYPEH 309 0.0046 (4/875) 0 * * Os_TE_795892 Chr1 12428408 12428409 - COPIA2-LTR_OS 6433 0.0010 (3/2933) 0 * Os_TE_795891 Os_TE_795891 Chr1 12428404 12428403 + COPIA2-LTR_OS 6433 0.0003 (1/2931) 0 * Os_TE_795892 Os_TE_795871 Chr1 12418401 12418402 + RIRE3_LTR 12054 0.0665 (197/2962) 0 * * Os_TE_795864 Chr1 12415531 12415530 - COPIA2-LTR_OS 6433 0.0033 (10/2987) 0 * * Os_TE_795777 Chr1 12374461 12374460 + SPMLIKE 10989 0.0010 (3/2935) 0 * * Os_TE_795758 Chr1 12371291 12371292 - RETROSAT3_LTR 11537 0.6098 (1822/2988) 0 * * Os_TE_795756 Chr1 12371285 12372727 - MERMITED 1572 0.4595 (1377/2997) 1 Intact * Os_TE_795746 Chr1 12367636 12367969 + NDNA1TNA_OS 334 0.2792 (828/2966) 1 Intact * Os_TE_795743 Chr1 12366910 12366911 + OSTE33 1012 0.4766 (1393/2923) 0 * Os_TE_795742 Os_TE_795742 Chr1 12366901 12366900 + OSTE33 1012 0.4674 (1364/2918) 0 * Os_TE_795743 Os_TE_795736 Chr1 12363529 12363530 + ORSgTEMT00600120 364 0.0007 (2/2995) 0 * Os_TE_795735 Os_TE_795735 Chr1 12363527 12363526 - CASTAWAY 364 0.0007 (2/2994) 0 * Os_TE_795736 Os_TE_795721 Chr1 12361781 12361780 - STOWAWAY51_OS 246 0.0007 (2/2998) 0 * Os_TE_795720 Os_TE_795720 Chr1 12361773 12361774 - STOWAWAY51_OS 246 0.0007 (2/2995) 0 * Os_TE_795721 Os_TE_795715 Chr1 12360207 12360206 - SZ-35LTR 3853 0.0003 (1/2994) 0 * * Os_TE_795614 Chr1 12319012 12318750 + INDITTO 263 0.3259 (925/2838) 1 Intact * Os_TE_795599 Chr1 12315710 12315711 - GYPSY-A_LTR 8951 0.5205 (1552/2982) 0 * Os_TE_795598 Os_TE_795598 Chr1 12315706 12315705 + GYPSY-A_LTR 8951 0.5003 (1456/2910) 0 * Os_TE_795599 Os_TE_795536 Chr1 12294287 12293430 - MUDRN1_OS 764 0.2971 (886/2982) 1 Intact * Os_TE_795519 Chr1 12282166 12282165 + ORSiTERTOOT00385 6000 0.6138 (1335/2175) 0.07 * * Os_TE_795516 Chr1 12282088 12282087 + RETRO2_LTR 12874 0.0017 (5/2985) 0 * * Os_TE_795487 Chr1 12271895 12271896 + ORSiTERTOOT00034 791 0.0003 (1/2891) 0 * Os_TE_795486 Os_TE_795486 Chr1 12271891 12271890 - SZ-22_LTR 4403 0.0003 (1/2895) 0 * Os_TE_795487 Os_TE_795478 Chr1 12263345 12263344 - STOWAWAY51_OS 246 0.0007 (2/2993) 0 * Os_TE_795477 Os_TE_795477 Chr1 12263339 12263340 + STOWAWAY51_OS 246 0.0003 (1/2989) 0 * Os_TE_795478 Os_TE_795468 Chr1 12249230 12249231 - MPING 430 0.0021 (6/2910) 0 * Os_TE_795467 Os_TE_795467 Chr1 12249228 12249227 + MPING 430 0.0020 (6/2983) 0 * Os_TE_795468 Os_TE_795417 Chr1 12217205 12217206 - RIRE3_LTR 12054 0.5032 (1411/2804) 0 * * Os_TE_795406 Chr1 12208328 12208329 + COPI2_LTR 4733 0.0521 (145/2784) 0 * Os_TE_795405 Os_TE_795405 Chr1 12208323 12208322 - COPI2_LTR 4733 0.0493 (137/2781) 0 * Os_TE_795406 Os_TE_795399 Chr1 12205900 12205899 + ORSiTERT00200069 6058 0.2170 (573/2640) 0 * Os_TE_795398 Os_TE_795398 Chr1 12205898 12205899 - TRUNCATOR2_LTR 2904 0.2185 (574/2627) 0 * Os_TE_795399 Os_TE_795397 Chr1 12205692 12205691 - TRUNCATOR 2918 0.0007 (2/2739) 0 * Os_TE_795396 Os_TE_795396 Chr1 12205691 12205692 + TRUNCATOR 2918 0.0011 (3/2741) 0 * Os_TE_795397 Os_TE_795297 Chr1 12162893 12162894 - ORSgTETN00200001 10994 0.0003 (1/2981) 0 * * Os_TE_795295 Chr1 12162476 12162477 - RETROSAT5_LTR 13878 0.0958 (272/2838) 0 * * Os_TE_795280 Chr1 12157604 12157603 + COPI2_LTR 4733 0.0003 (1/2979) 0 * * Os_TE_795278 Chr1 12156296 12156295 + GYPSY-A_LTR 8951 0.7176 (2150/2996) 0 * * Os_TE_795273 Chr1 12150419 12150420 + COPI2_LTR 4733 0.0003 (1/2980) 0 * Os_TE_795272 Os_TE_795272 Chr1 12150415 12150414 - COPI2_LTR 4733 0.0003 (1/2959) 0 * Os_TE_795273 Os_TE_795218 Chr1 12138703 12138704 - RIREX_LTR 8828 0.0003 (1/2942) 0 * * Os_TE_795208 Chr1 12137925 12137926 - SZ-48LTR 3632 0.0019 (5/2638) -1 * Os_TE_795207 Os_TE_795207 Chr1 12137921 12137920 + SZ-48LTR 3632 0.0023 (6/2644) -1 * Os_TE_795208 Os_TE_795178 Chr1 12132946 12132947 + RETROSAT4_LTR 13504 0.0946 (269/2843) 0 * Os_TE_795177 Os_TE_795177 Chr1 12132942 12132941 - RETROSAT4_LTR 13504 0.0983 (280/2847) 0 * Os_TE_795178 Os_TE_795175 Chr1 12130311 12130312 + MERMITE18E 1528 0.0004 (1/2849) 0 * * Os_TE_795166 Chr1 12127590 12127591 - OLO24 345 0.0257 (77/2992) 0 * Os_TE_795165 Os_TE_795165 Chr1 12127588 12127587 + OLO24 345 0.0254 (76/2994) 0 * Os_TE_795166 Os_TE_795164 Chr1 12124798 12124799 - ORSgTETN00200001 10994 0.0221 (66/2983) 0 * * Os_TE_795143 Chr1 12118424 12118425 - ORSgTERT00200486 3946 0.0003 (1/2935) 0 * * Os_TE_795124 Chr1 12106312 12106313 + ORSgTETNOOT01834 251 0.0156 (34/2176) 0 * Os_TE_795123 Os_TE_795123 Chr1 12106310 12106309 + ORSgTETNOOT01998 254 0.0140 (32/2278) 0 * Os_TE_795124 Os_TE_795120 Chr1 12105984 12105985 - RETROSAT2LTR 12796 0.0005 (1/2217) 0 * * Os_TE_795102 Chr1 12097274 12097275 + RIREX_LTR 8828 0.0114 (34/2978) 0 * Os_TE_795101 Os_TE_795101 Chr1 12097270 12097269 - RIREX_LTR 8828 0.0111 (33/2984) 0 * Os_TE_795102 Os_TE_795100 Chr1 12097203 12097202 + KRISPIE 956 0.0235 (70/2982) 0 * Os_TE_795099 Os_TE_795099 Chr1 12097202 12097203 - KRISPIE 956 0.0239 (71/2976) 0 * Os_TE_795100 Os_TE_795092 Chr1 12095148 12095149 + CASTAWAY 364 0.0114 (33/2897) 0 * * Os_TE_795088 Chr1 12090912 12090911 + NDNA1TNA_OS 334 0.0003 (1/2962) 0 * Os_TE_795087 Os_TE_795087 Chr1 12090892 12090893 - NDNA1TNA_OS 334 0.0003 (1/2961) 0 * Os_TE_795088 Os_TE_795073 Chr1 12084264 12084265 - OLO24 345 0.0242 (72/2981) 0 * Os_TE_795072 Os_TE_795072 Chr1 12084262 12084261 + OLO24 345 0.0245 (73/2983) 0 * Os_TE_795073 Os_TE_795065 Chr1 12081022 12081023 + ORSgTEMT04600010 284 0.0020 (6/2993) 0 * * Os_TE_795029 Chr1 12070144 12070143 + ORSgTEMT01600421 237 0.0092 (27/2928) 0 * * Os_TE_794952 Chr1 12040370 12040371 - RIRE3_LTR 12054 0.5528 (1613/2918) 0 * * Os_TE_794890 Chr1 11995133 11995132 - TRUNCATOR 2918 0.0003 (1/2985) 0 * Os_TE_794889 Os_TE_794889 Chr1 11995132 11995133 + TRUNCATOR 2918 0.0003 (1/2988) 0 * Os_TE_794890 Os_TE_794884 Chr1 11993588 11993587 - RIRE3A_LTR 10580 0.0200 (60/2998) 0 * * Os_TE_794882 Chr1 11992393 11992394 - COPIA2-LTR_OS 6433 0.0007 (2/2981) 0 * Os_TE_794881 Os_TE_794881 Chr1 11992389 11992388 + COPIA2-LTR_OS 6433 0.0007 (2/2982) 0 * Os_TE_794882 Os_TE_794870 Chr1 11989016 11989015 - RIREX_LTR 8828 0.0007 (2/2990) 0 * * Os_TE_794862 Chr1 11984769 11984770 + NDNA1TNA_OS 334 0.0003 (1/2943) 0 * Os_TE_794861 Os_TE_794861 Chr1 11984767 11984766 - NDNA1TNA_OS 334 0.0003 (1/2949) 0 * Os_TE_794862 Os_TE_794855 Chr1 11984253 11984254 - COPIA2-LTR_OS 6433 0.0158 (47/2970) 0 * Os_TE_794854 Os_TE_794854 Chr1 11984249 11984248 + COPIA2-LTR_OS 6433 0.0116 (34/2943) 0 * Os_TE_794855 Os_TE_794853 Chr1 11983870 11983871 - MPING 430 0.0003 (1/2995) 0 * Os_TE_794852 Os_TE_794852 Chr1 11983868 11983867 + MPING 430 0.0003 (1/2997) 0 * Os_TE_794853 Os_TE_794845 Chr1 11974197 11974198 + OLO24 345 0.0130 (38/2923) 0 * Os_TE_794844 Os_TE_794844 Chr1 11974195 11974194 - OLO24 345 0.0123 (36/2936) 0 * Os_TE_794845 Os_TE_794841 Chr1 11972919 11972918 + STOWAWAY45_OS 266 0.0020 (6/2961) 0 * * Os_TE_794801 Chr1 11961569 11961570 - SC-8_LTR 4951 0.0013 (4/2989) 0 * * Os_TE_794767 Chr1 11947324 11945884 + DS-RICE4N 715 0.2912 (813/2792) 1 Intact Os_TE_794766 Os_TE_794766 Chr1 11945884 11947324 - DS-RICE2N 613 0.3020 (857/2838) 1 Intact Os_TE_794767 Os_TE_794749 Chr1 11939745 11939746 - ORSgTEMT00900099 250 0.0014 (4/2926) 0 * * Os_TE_794686 Chr1 11916845 11916844 - TELIA 141 0.0007 (2/2956) 0 * * Os_TE_794645 Chr1 11900288 11900289 - ORSgTETN00200001 10994 0.0044 (13/2947) 0 * Os_TE_794644 Os_TE_794644 Chr1 11900286 11900285 + SPMLIKE 10989 0.0125 (37/2970) 0 * Os_TE_794645 Os_TE_794624 Chr1 11893207 11885778 - RIREX_LTR 8828 0.2057 (611/2970) 1 Intact * Os_TE_794605 Chr1 11879786 11879785 - COPIA2-LTR_OS 6433 0.0015 (4/2748) 0 * * Os_TE_794601 Chr1 11878890 11878891 + OSTE33 1012 0.0218 (65/2987) 0 * Os_TE_794600 Os_TE_794600 Chr1 11878881 11878880 + OSTE33 1012 0.0218 (65/2988) 0 * Os_TE_794601 Os_TE_794589 Chr1 11873338 11869480 - RETROSAT4_LTR 13504 0.2975 (883/2968) 1 Solo_LTR Os_TE_794586 Os_TE_794586 Chr1 11869486 11873338 + SZ-35LTR 3853 0.2798 (810/2895) 1 Intact Os_TE_794589 Os_TE_794585 Chr1 11869251 11869252 + OSTE20 496 0.5226 (1467/2807) 0 * Os_TE_794584 Os_TE_794584 Chr1 11869244 11869243 + OSTE20 496 0.5401 (1564/2896) 0 * Os_TE_794585 Os_TE_794580 Chr1 11868738 11868739 - SPMLIKE 10989 0.0003 (1/2897) 0 * Os_TE_794579 Os_TE_794579 Chr1 11868736 11868735 + SPMLIKE 10989 0.0003 (1/2903) 0 * Os_TE_794580 Os_TE_794565 Chr1 11865917 11865918 - ORSgTERT00201216 11284 0.0387 (115/2968) 0 * Os_TE_794564 Os_TE_794564 Chr1 11865913 11865912 - RIRE2_LTR 11306 0.0377 (112/2974) 0 * Os_TE_794565 Os_TE_794556 Chr1 11862490 11862489 - TRUNCATOR2_LTR 2904 0.0680 (136/1999) -1 * * Os_TE_794546 Chr1 11856407 11856408 - TRUNCATOR2_LTR 2904 0.0014 (4/2952) 0 * Os_TE_794545 Os_TE_794545 Chr1 11856403 11856402 + ORSiCMCM00100019 2717 0.0010 (3/2956) 0 * Os_TE_794546 Os_TE_794484 Chr1 11839907 11839908 + F770 284 0.0785 (234/2982) 0 * * Os_TE_794460 Chr1 11830744 11830743 + COPI2_LTR 4733 0.0004 (1/2689) 0 * * Os_TE_794449 Chr1 11827327 11827328 + RIREX_LTR 8828 0.0134 (40/2990) 0 * Os_TE_794448 Os_TE_794448 Chr1 11827323 11827322 - RIREX_LTR 8828 0.0134 (40/2987) 0 * Os_TE_794449 Os_TE_794417 Chr1 11809088 11809089 - ORSgTERT00200842 1080 0.0003 (1/2936) 0 * * Os_TE_794389 Chr1 11792710 11792709 - ORSgTERT00201216 11284 0.0031 (6/1957) 0 * * Os_TE_794382 Chr1 11790743 11790744 + RIREX_LTR 8828 0.0764 (229/2996) 0 * Os_TE_794381 Os_TE_794381 Chr1 11790739 11790738 - RIREX_LTR 8828 0.0761 (228/2996) 0 * Os_TE_794382 Os_TE_794344 Chr1 11774553 11774554 - RIREX_LTR 8828 0.0016 (4/2557) 0 * Os_TE_794343 Os_TE_794343 Chr1 11774549 11774548 + RIREX_LTR 8828 0.0016 (4/2547) 0 * Os_TE_794344 Os_TE_794278 Chr1 11757835 11757836 + ORSgTETNOOT00670 249 0.0003 (1/2996) 0 * * Os_TE_794261 Chr1 11753736 11753737 - COPIA2-LTR_OS 6433 0.0013 (4/2985) 0 * Os_TE_794260 Os_TE_794260 Chr1 11753732 11753731 + COPIA2-LTR_OS 6433 0.0013 (4/2985) 0 * Os_TE_794261 Os_TE_794247 Chr1 11750699 11750700 + ORSiTERTOOT00441 4741 0.0003 (1/2992) 0 * Os_TE_794246 Os_TE_794246 Chr1 11750695 11750694 - ORSiTERTOOT00441 4741 0.0003 (1/2991) 0 * Os_TE_794247 Os_TE_794192 Chr1 11733969 11733970 + COPIA2-LTR_OS 6433 0.0047 (12/2554) 0 * Os_TE_794191 Os_TE_794191 Chr1 11733965 11733964 - COPIA2-LTR_OS 6433 0.0043 (11/2533) 0 * Os_TE_794192 Os_TE_794181 Chr1 11731557 11731556 - COPIA2-LTR_OS 6433 0.0003 (1/2976) 0 * * Os_TE_794178 Chr1 11730918 11730919 - NDNA1TNA_OS 334 0.0007 (2/2923) 0 * Os_TE_794177 Os_TE_794177 Chr1 11730916 11730915 + NDNA1TNA_OS 334 0.0007 (2/2923) 0 * Os_TE_794178 Os_TE_794175 Chr1 11730269 11730270 + SEVERIN-2 1952 0.0007 (2/2990) 0 * * Os_TE_794142 Chr1 11710818 11710819 + ORSiCMCM00100019 2717 0.0007 (2/2963) 0 * Os_TE_794141 Os_TE_794141 Chr1 11710814 11710813 - TRUNCATOR2_LTR 2904 0.0007 (2/2959) 0 * Os_TE_794142 Os_TE_794109 Chr1 11698247 11698248 - SC-3_LTR 5748 0.0003 (1/2994) 0 * Os_TE_794108 Os_TE_794108 Chr1 11698243 11698242 + ORSiTERTOOT00296 5553 0.0003 (1/2990) 0 * Os_TE_794109 Os_TE_794107 Chr1 11696520 11696519 - AMYLTP 383 0.0010 (3/2984) 0 * * Os_TE_794102 Chr1 11693278 11693516 - ORSgTEMT01601432 239 0.1709 (426/2493) -1 Intact * Os_TE_794089 Chr1 11689442 11689443 + ORSgTETNOOT01219 231 0.0144 (43/2985) 0 * Os_TE_794088 Os_TE_794088 Chr1 11689435 11689434 + ORSgTETNOOT00908 242 0.0147 (44/2984) 0 * Os_TE_794089 Os_TE_794074 Chr1 11680067 11680068 + OSR42_LTR 5605 0.0577 (173/2997) 0 * Os_TE_794073 Os_TE_794073 Chr1 11680063 11680062 - OSR42_LTR 5605 0.0561 (168/2993) 0 * Os_TE_794074 Os_TE_794072 Chr1 11679560 11679561 - SC-8_LTR 4951 0.0003 (1/2885) 0 * * Os_TE_794068 Chr1 11676498 11676499 - SC-3_LTR 5748 0.0003 (1/2993) 0 * Os_TE_794067 Os_TE_794067 Chr1 11676494 11676493 + ORSiTERTOOT00296 5553 0.0003 (1/2990) 0 * Os_TE_794068 Os_TE_793968 Chr1 11648741 11648740 + TRUNCATOR 2918 0.0058 (17/2912) 0 * Os_TE_793967 Os_TE_793967 Chr1 11648740 11648741 - TRUNCATOR 2918 0.0034 (10/2907) 0 * Os_TE_793968 Os_TE_793965 Chr1 11647548 11647547 - YOUREN 286 0.0003 (1/2960) 0 * * Os_TE_793940 Chr1 11641023 11641024 + MPING 430 0.0020 (6/2971) 0 * * Os_TE_793889 Chr1 11623606 11623605 + OLO24 345 0.0003 (1/2946) 0 * * Os_TE_793887 Chr1 11623235 11623236 - F569 228 0.1297 (383/2952) 0 * Os_TE_793886 Os_TE_793886 Chr1 11623233 11623232 + F569 228 0.1315 (389/2959) 0 * Os_TE_793887 Os_TE_793885 Chr1 11620491 11620490 - ORSgTEMT02000040 196 0.0003 (1/2984) 0 * * Os_TE_793882 Chr1 11618339 11618338 - TNR2A 152 0.0076 (22/2898) 0 * * Os_TE_793819 Chr1 11593308 11593309 - TRUNCATOR2_LTR 2904 0.0949 (280/2950) 0 * Os_TE_793818 Os_TE_793818 Chr1 11593304 11593303 + ORSiCMCM00100019 2717 0.0908 (267/2942) 0 * Os_TE_793819 Os_TE_793798 Chr1 11587257 11587256 - ORSiTEMT01300001 950 0.0003 (1/2974) 0 * * Os_TE_793797 Chr1 11586519 11586520 - OLO24 345 0.0696 (206/2959) 0 * Os_TE_793796 Os_TE_793796 Chr1 11586517 11586516 + OLO24 345 0.0740 (220/2972) 0 * Os_TE_793797 Os_TE_793792 Chr1 11585150 11585151 + MPING 430 0.0003 (1/2995) 0 * Os_TE_793791 Os_TE_793791 Chr1 11585148 11585147 - MPING 430 0.0003 (1/2995) 0 * Os_TE_793792 Os_TE_793776 Chr1 11578414 11578119 + Cassandra_OS-LTR 764 0.3093 (887/2868) 1 Solo_LTR * Os_TE_793755 Chr1 11572052 11572053 - RIRE2_LTR 11306 0.0030 (9/2999) 0 * * Os_TE_793752 Chr1 11569773 11569774 + INDITTO 263 0.1028 (280/2724) 0 * * Os_TE_793739 Chr1 11561055 11561056 - MPING 430 0.0003 (1/2966) 0 * Os_TE_793738 Os_TE_793738 Chr1 11561053 11561052 + MPING 430 0.0003 (1/2965) 0 * Os_TE_793739 Os_TE_793737 Chr1 11560971 11560972 - RIREX_LTR 8828 0.0010 (3/2913) 0 * Os_TE_793736 Os_TE_793736 Chr1 11560967 11560966 + RIREX_LTR 8828 0.0014 (4/2908) 0 * Os_TE_793737 Os_TE_793711 Chr1 11555912 11555911 - TRUNCATOR 2918 0.0101 (29/2872) 0 * * Os_TE_793692 Chr1 11547137 11547138 + ORSiTERTOOT00034 791 0.0007 (2/2952) 0 * Os_TE_793691 Os_TE_793691 Chr1 11547133 11547132 - SZ-22_LTR 4403 0.0007 (2/2965) 0 * Os_TE_793692 Os_TE_793673 Chr1 11538613 11538614 + ENSPM4_OS 11610 0.0017 (5/2956) 0 * * Os_TE_793650 Chr1 11532546 11532547 + RIREX_LTR 8828 0.0007 (1/1475) 0 * * Os_TE_793644 Chr1 11528194 11528195 + ORSiTERTOOT00296 5553 0.0003 (1/2995) 0 * Os_TE_793643 Os_TE_793643 Chr1 11528190 11528189 - SC-3_LTR 5748 0.0003 (1/2996) 0 * Os_TE_793644 Os_TE_793624 Chr1 11520992 11520993 - SZ-9LTR 965 0.0027 (8/2996) 0 * * Os_TE_793622 Chr1 11519717 11519718 + ORSiTERTOOT00034 791 0.0028 (8/2891) 0 * Os_TE_793621 Os_TE_793621 Chr1 11519713 11519712 - SZ-22_LTR 4403 0.0028 (8/2889) 0 * Os_TE_793622 Os_TE_793616 Chr1 11516711 11516710 - RETROSAT2LTR 12796 0.0003 (1/2942) 0 * * Os_TE_793555 Chr1 11497374 11497373 - ORSgTEMT01700357 152 0.7073 (2088/2952) 0 * * Os_TE_793533 Chr1 11491930 11491929 - STOWAWAY51_OS 246 0.0011 (3/2810) 0 * * Os_TE_793503 Chr1 11477478 11477479 + DITAIL 271 0.0017 (5/2970) 0 * * Os_TE_793490 Chr1 11470524 11470525 - RIRE3_LTR 12054 0.0007 (2/2762) 0 * Os_TE_793489 Os_TE_793489 Chr1 11470520 11470519 + RIRE3_LTR 12054 0.0007 (2/2736) 0 * Os_TE_793490 Os_TE_793471 Chr1 11465813 11465812 - TYPEM 227 0.0017 (5/2975) 0 * Os_TE_793470 Os_TE_793470 Chr1 11465812 11465813 - ORSgTEMT02400246 177 0.0017 (5/2983) 0 * Os_TE_793471 Os_TE_793434 Chr1 11452840 11452841 - F569 228 0.0010 (3/2983) 0 * * Os_TE_793431 Chr1 11451585 11451586 - SC-4_LTR 5218 0.0003 (1/2952) 0 * Os_TE_793430 Os_TE_793430 Chr1 11451581 11451580 + SC-4_LTR 5218 0.0003 (1/2967) 0 * Os_TE_793431 Os_TE_793428 Chr1 11450555 11439670 - ENSPM4_OS 11610 0.3777 (991/2624) 1 Intact Os_TE_793425 Os_TE_793425 Chr1 11439670 11450554 + ENSPM4_OS 11610 0.3712 (951/2562) 1 Intact Os_TE_793428 Os_TE_793423 Chr1 11438482 11438483 - ORSgTETN00200001 10994 0.0007 (2/2990) 0 * Os_TE_793422 Os_TE_793422 Chr1 11438480 11438479 + SPMLIKE 10989 0.0007 (2/2988) 0 * Os_TE_793423 Os_TE_793420 Chr1 11437717 11437718 - ORSgTEMT02400179 221 0.0003 (1/2965) 0 * * Os_TE_793417 Chr1 11435675 11435676 - RIREX_LTR 8828 0.0021 (6/2899) 0 * Os_TE_793416 Os_TE_793416 Chr1 11435671 11435670 + RIREX_LTR 8828 0.0017 (5/2912) 0 * Os_TE_793417 Os_TE_793413 Chr1 11435234 11435233 - OSTE18 129 0.0019 (5/2640) 0 * * Os_TE_793412 Chr1 11432560 11432561 + ORSiTERT00400043 479 0.0011 (3/2853) 0 * * Os_TE_793405 Chr1 11428739 11428740 + COPIA2-LTR_OS 6433 0.0007 (2/2995) 0 * * Os_TE_793397 Chr1 11425702 11425701 + ORSgTETNOOT00908 242 0.0014 (4/2889) 0 * * Os_TE_793379 Chr1 11411961 11411960 + OSTE33 1012 0.0809 (239/2953) 0 * * Os_TE_793377 Chr1 11411952 11411951 + RIREX_LTR 8828 0.0015 (4/2730) 0 * * Os_TE_793369 Chr1 11409632 11409633 - RETROFIT_LTR 4866 0.0003 (1/2992) 0 * Os_TE_793368 Os_TE_793368 Chr1 11409629 11409628 + ORSiTERTOOT00033 4884 0.0003 (1/2992) 0 * Os_TE_793369 Os_TE_793288 Chr1 11380391 11380390 - ORSgTEMT00600085 364 0.0881 (260/2951) 0 * * Os_TE_793286 Chr1 11380103 11380104 - ORSgTEMT00501610 129 0.0003 (1/2950) 0 * * Os_TE_793285 Chr1 11380094 11380095 + NDNA1TNA_OS 334 0.0007 (2/2946) 0 * Os_TE_793284 Os_TE_793284 Chr1 11380092 11380091 - NDNA1TNA_OS 334 0.0007 (2/2955) 0 * Os_TE_793285 Os_TE_793281 Chr1 11376685 11376684 + TRUNCATOR 2918 0.0017 (5/2937) 0 * Os_TE_793280 Os_TE_793280 Chr1 11376684 11376685 - TRUNCATOR 2918 0.0010 (3/2937) 0 * Os_TE_793281 Os_TE_793258 Chr1 11368767 11368768 - COPIA2-LTR_OS 6433 0.0007 (2/2846) 0 * Os_TE_793257 Os_TE_793257 Chr1 11368763 11368762 + COPIA2-LTR_OS 6433 0.0013 (2/1583) 0 * Os_TE_793258 Os_TE_793245 Chr1 11365849 11365850 + RIREX_LTR 8828 0.0003 (1/2946) 0 * Os_TE_793244 Os_TE_793244 Chr1 11365845 11365844 - RIREX_LTR 8828 0.0003 (1/2949) 0 * Os_TE_793245 Os_TE_793242 Chr1 11365494 11365495 - ORSiTETNOOT00200 3563 0.0007 (2/2909) 0 * * Os_TE_793240 Chr1 11364491 11364490 + STOWAWAY51_OS 246 0.0003 (1/2965) 0 * Os_TE_793239 Os_TE_793239 Chr1 11364485 11364486 + ORSgTEMT01601591 242 0.0003 (1/2961) 0 * Os_TE_793240 Os_TE_793238 Chr1 11364471 11364472 - NDNA2TNA_OS 346 0.0017 (5/2964) 0 * Os_TE_793237 Os_TE_793237 Chr1 11364470 11364469 + NDNA2TNA_OS 346 0.0017 (5/2966) 0 * Os_TE_793238 Os_TE_793199 Chr1 11353503 11353504 - CACTA-M 1129 0.0904 (261/2886) 0 * Os_TE_793198 Os_TE_793198 Chr1 11353501 11353500 + CACTA-M 1129 0.0823 (236/2867) 0 * Os_TE_793199 Os_TE_793193 Chr1 11353075 11353076 + TNR11 811 0.0003 (1/2942) 0 * * Os_TE_793191 Chr1 11350034 11348641 + OSTE33 1012 0.3361 (975/2901) 1 Intact Os_TE_793188 Os_TE_793188 Chr1 11348641 11350034 + OSTE33 1012 0.3361 (978/2910) 1 Intact Os_TE_793191 Os_TE_793184 Chr1 11346407 11346408 - COPIA2-LTR_OS 6433 0.0003 (1/2929) 0 * * Os_TE_793103 Chr1 11299705 11292050 - MuDR4_OS 7610 0.3365 (995/2957) 1 Intact Os_TE_793101 Os_TE_793101 Chr1 11292050 11299531 - MuDR4_OS 7610 0.3350 (992/2961) 1 Intact Os_TE_793103 Os_TE_793077 Chr1 11282996 11282997 + HARB-1_OS 5166 0.0007 (2/2992) 0 * Os_TE_793076 Os_TE_793076 Chr1 11282994 11282993 - HARB-1_OS 5166 0.0007 (2/2991) 0 * Os_TE_793077 Os_TE_793033 Chr1 11268533 11268534 - INDITTO 263 0.0077 (22/2870) 0 * Os_TE_793032 Os_TE_793032 Chr1 11268531 11268530 + INDITTO 263 0.0077 (22/2872) 0 * Os_TE_793033 Os_TE_793011 Chr1 11261771 11261770 - MUDRN1_OS 764 0.5657 (1645/2908) 0 * * Os_TE_793006 Chr1 11256887 11256888 - SC-3_LTR 5748 0.0074 (22/2991) 0 * Os_TE_793005 Os_TE_793005 Chr1 11256883 11256882 + ORSiTERTOOT00296 5553 0.0074 (22/2991) 0 * Os_TE_793006 Os_TE_792975 Chr1 11243040 11243041 + RIREX_LTR 8828 0.0924 (275/2976) 0 * Os_TE_792974 Os_TE_792974 Chr1 11243036 11243035 - RIREX_LTR 8828 0.0932 (277/2972) 0 * Os_TE_792975 Os_TE_792959 Chr1 11237252 11237251 - ORSgTEMT00101174 225 0.0013 (4/2981) 0 * Os_TE_792958 Os_TE_792958 Chr1 11237248 11237249 - STOWAWAY10_OS 259 0.0013 (4/2983) 0 * Os_TE_792959 Os_TE_792954 Chr1 11236148 11236149 - ORSgTEMT02400179 221 0.0010 (3/2991) 0 * * Os_TE_792905 Chr1 11218118 11218119 + ORSiTERTOOT00296 5553 0.0003 (1/2991) 0 * Os_TE_792904 Os_TE_792904 Chr1 11218114 11218113 - SC-3_LTR 5748 0.0003 (1/2992) 0 * Os_TE_792905 Os_TE_792900 Chr1 11216311 11216310 + ORSiTERTOOT00226 792 0.0003 (1/2979) 0 * * Os_TE_792884 Chr1 11208524 11207576 + CRATA 4786 0.1042 (311/2984) 1 Intact Os_TE_792883 Os_TE_792883 Chr1 11207576 11208524 - CRATA 4786 0.1064 (318/2990) 1 Intact Os_TE_792884 Os_TE_792868 Chr1 11202378 11202377 + RIREX_LTR 8828 0.0894 (253/2830) 0 * * Os_TE_792851 Chr1 11191153 11191154 + ORSgTEMT01601591 242 0.0024 (7/2906) 0 * * Os_TE_792806 Chr1 11170643 11170642 + ENSPM4_OS 11610 0.2301 (678/2947) 0 * * Os_TE_792757 Chr1 11157433 11157434 - STOWAWAY36_OS 268 0.0013 (4/2976) 0 * * Os_TE_792674 Chr1 11133912 11133913 - RIREX_LTR 8828 0.0003 (1/2967) 0 * Os_TE_792673 Os_TE_792673 Chr1 11133908 11133907 + RIREX_LTR 8828 0.0003 (1/2968) 0 * Os_TE_792674 Os_TE_792672 Chr1 11133814 11133815 - MPING 430 0.0017 (5/2965) 0 * Os_TE_792671 Os_TE_792671 Chr1 11133812 11133811 + MPING 430 0.0017 (5/2977) 0 * Os_TE_792672 Os_TE_792665 Chr1 11132758 11132518 + ORSgTEMT00900105 238 0.5359 (1455/2715) 1 Intact * Os_TE_792658 Chr1 11129434 11129435 - MPING 430 0.0010 (1/982) 0 * Os_TE_792657 Os_TE_792657 Chr1 11129432 11129431 + MPING 430 0.0009 (1/1176) 0 * Os_TE_792658 Os_TE_792648 Chr1 11117068 11117069 + RETROSAT4_LTR 13504 0.0835 (248/2970) 0 * Os_TE_792647 Os_TE_792647 Chr1 11117064 11117063 - SZ-35LTR 3853 0.0831 (247/2973) 0 * Os_TE_792648 Os_TE_792644 Chr1 11114989 11114990 - COPIA2-LTR_OS 6433 0.0004 (1/2833) 0 * Os_TE_792643 Os_TE_792643 Chr1 11114985 11114984 + COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_792644 Os_TE_792637 Chr1 11111538 11111539 - INDITTO 263 0.0031 (9/2911) 0 * Os_TE_792636 Os_TE_792636 Chr1 11111536 11111535 + INDITTO 263 0.0031 (9/2931) 0 * Os_TE_792637 Os_TE_792612 Chr1 11098612 11098613 - RIRE3_LTR 12054 0.4364 (1303/2986) 0 * Os_TE_792611 Os_TE_792611 Chr1 11098608 11098607 + RIRE3_LTR 12054 0.4260 (1263/2965) 0 * Os_TE_792612 Os_TE_792609 Chr1 11098575 11098576 - ORSiTERT00200154 9386 0.0574 (171/2977) 0 * Os_TE_792608 Os_TE_792608 Chr1 11098569 11098568 + TRUNCATOR 2918 0.0611 (180/2944) 0 * Os_TE_792609 Os_TE_792607 Chr1 11098564 11098565 - RIRE3_LTR 12054 0.0003 (1/2979) 0 * * Os_TE_792605 Chr1 11098253 11098252 + ORSiCMCM00100019 2717 0.4320 (1289/2984) 0 * * Os_TE_792599 Chr1 11092944 11092945 - SC-3_LTR 5748 0.0003 (1/2997) 0 * Os_TE_792598 Os_TE_792598 Chr1 11092940 11092939 + ORSiTERTOOT00296 5553 0.0003 (1/2995) 0 * Os_TE_792599 Os_TE_792569 Chr1 11085787 11085786 + RETROSAT2LTR 12796 0.0589 (173/2938) 0 * * Os_TE_792563 Chr1 11083550 11083551 - RETRO2A_LTR 12895 0.0016 (4/2471) -1 * * Os_TE_792560 Chr1 11082953 11082590 + CASTAWAY 364 0.3408 (1016/2981) 1 Intact Os_TE_792558 Os_TE_792558 Chr1 11082590 11082949 + ORSgTEMT00600124 361 0.3432 (1022/2978) 1 Intact Os_TE_792560 Os_TE_792531 Chr1 11071377 11071376 - COPI2_LTR 4733 0.0003 (1/2994) 0 * * Os_TE_792516 Chr1 11061669 11061668 + STOWAWAY44_OS 240 0.0007 (2/2989) 0 * Os_TE_792515 Os_TE_792515 Chr1 11061666 11061667 - STOWAWAY44_OS 240 0.0007 (2/2991) 0 * Os_TE_792516 Os_TE_792506 Chr1 11055685 11055686 + COPIA2-LTR_OS 6433 0.0003 (1/2942) 0 * Os_TE_792505 Os_TE_792505 Chr1 11055681 11055680 - COPIA2-LTR_OS 6433 0.0003 (1/2946) 0 * Os_TE_792506 Os_TE_792502 Chr1 11055161 11055162 - MPING 430 0.0010 (3/2992) 0 * Os_TE_792501 Os_TE_792501 Chr1 11055156 11055155 + MPING 430 0.0010 (3/2993) 0 * Os_TE_792502 Os_TE_792500 Chr1 11054508 11054509 + MPING 430 0.0010 (3/2945) 0 * Os_TE_792499 Os_TE_792499 Chr1 11054506 11054505 - MPING 430 0.0010 (3/2957) 0 * Os_TE_792500 Os_TE_792492 Chr1 11052714 11052715 + SPMLIKE 10989 0.0003 (1/2986) 0 * Os_TE_792491 Os_TE_792491 Chr1 11052712 11052711 - ORSgTETN00200001 10994 0.0003 (1/2980) 0 * Os_TE_792492 Os_TE_792477 Chr1 11049867 11049868 - TELIA 141 0.0021 (6/2916) 0 * Os_TE_792476 Os_TE_792476 Chr1 11049859 11049858 + TELIA 141 0.0021 (6/2919) 0 * Os_TE_792477 Os_TE_792453 Chr1 11045916 11045917 - STOWAWAY51_OS 246 0.0007 (2/2979) 0 * * Os_TE_792452 Chr1 11045872 11045873 + INDITTO 263 0.0050 (15/2986) 0 * Os_TE_792451 Os_TE_792451 Chr1 11045870 11045869 - INDITTO 263 0.0044 (13/2979) 0 * Os_TE_792452 Os_TE_792386 Chr1 11021706 11021705 + RIRE3_LTR 12054 0.0010 (3/2994) 0 * * Os_TE_792352 Chr1 11000595 11000596 - ORSiTERTOOT00254 1927 0.0023 (7/2986) 0 * * Os_TE_792341 Chr1 10996615 10996616 + ORSgTETNOOT02316 263 0.2596 (773/2978) 0 * Os_TE_792340 Os_TE_792340 Chr1 10996613 10996612 - INDITTO 263 0.2545 (756/2970) 0 * Os_TE_792341 Os_TE_792326 Chr1 10995223 10995222 + RETRO2A_LTR 12895 0.3747 (1119/2986) 0 * * Os_TE_792324 Chr1 10994363 10994364 + RETROSAT2LTR 12796 0.0003 (1/2999) 0 * Os_TE_792323 Os_TE_792323 Chr1 10994361 10994360 - RETROSAT2LTR 12796 0.0003 (1/2996) 0 * Os_TE_792324 Os_TE_792316 Chr1 10991801 10991802 - STOWAWAY51_OS 246 0.0003 (1/2957) 0 * * Os_TE_792300 Chr1 10984187 10984186 + CASTAWAY-3 314 0.0017 (5/2983) 0 * * Os_TE_792233 Chr1 10946339 10946340 + COPIA2-LTR_OS 6433 0.0003 (1/2976) 0 * Os_TE_792232 Os_TE_792232 Chr1 10946335 10946334 - COPIA2-LTR_OS 6433 0.0003 (1/2968) 0 * Os_TE_792233 Os_TE_792228 Chr1 10940127 10940128 - TELIA 141 0.0007 (2/2993) 0 * * Os_TE_792224 Chr1 10939393 10939394 + ORSiTERTOOT00074 4935 0.0004 (1/2832) 0 * Os_TE_792223 Os_TE_792223 Chr1 10939389 10939388 - ORSiTERTOOT00074 4935 0.0004 (1/2836) 0 * Os_TE_792224 Os_TE_792217 Chr1 10937626 10937404 - ORSgTEMT02400246 177 0.3020 (899/2977) 1 Intact * Os_TE_792161 Chr1 10912553 10912554 - INDITTO 263 0.2914 (873/2996) 0 * Os_TE_792160 Os_TE_792160 Chr1 10912551 10912550 + INDITTO 263 0.2928 (877/2995) 0 * Os_TE_792161 Os_TE_792157 Chr1 10910563 10910564 + COPIA2-LTR_OS 6433 0.0003 (1/2977) 0 * * Os_TE_792150 Chr1 10905075 10905076 - RETROSAT4_LTR 13504 0.7050 (2108/2990) 0 * Os_TE_792149 Os_TE_792149 Chr1 10905071 10905070 + RETROSAT4_LTR 13504 0.6958 (2033/2922) 0 * Os_TE_792150 Os_TE_792148 Chr1 10904741 10904742 - MPING 430 0.0295 (87/2948) 0 * Os_TE_792147 Os_TE_792147 Chr1 10904739 10904738 + MPING 430 0.0291 (87/2989) 0 * Os_TE_792148 Os_TE_792139 Chr1 10901313 10901314 + ORSiTERTOOT00226 792 0.0069 (20/2899) 0 * Os_TE_792138 Os_TE_792138 Chr1 10901309 10901308 - SZ-22_LTR 4403 0.0072 (21/2906) 0 * Os_TE_792139 Os_TE_792134 Chr1 10895666 10895667 - RETROSAT4_LTR 13504 0.0007 (2/2993) 0 * Os_TE_792133 Os_TE_792133 Chr1 10895662 10895661 + RETROSAT4_LTR 13504 0.0007 (2/2995) 0 * Os_TE_792134 Os_TE_792129 Chr1 10894937 10893938 - RETRO2_LTR 12874 0.2993 (892/2980) 1 Solo_LTR * Os_TE_792115 Chr1 10890191 10890192 - TYPEH 309 0.0017 (5/2983) 0 * * Os_TE_792096 Chr1 10887009 10882371 + SZ-48LTR 3632 0.3016 (872/2891) 1 Intact Os_TE_792090 Os_TE_792090 Chr1 10882371 10887009 - SZ-48LTR 3632 0.3075 (902/2933) 1 Intact Os_TE_792096 Os_TE_792084 Chr1 10875198 10875199 + RETROSAT4_LTR 13504 0.3979 (1177/2958) 0 * * Os_TE_792059 Chr1 10847761 10847762 + MPING 430 0.0003 (1/2970) 0 * Os_TE_792058 Os_TE_792058 Chr1 10847759 10847758 - MPING 430 0.0003 (1/2966) 0 * Os_TE_792059 Os_TE_792030 Chr1 10837589 10837588 + TRUNCATOR 2918 0.4484 (1326/2957) 0 * Os_TE_792029 Os_TE_792029 Chr1 10837588 10837589 - TRUNCATOR 2918 0.4440 (1307/2944) 0 * Os_TE_792030 Os_TE_792004 Chr1 10816539 10816538 + RETROSAT2LTR 12796 0.0003 (1/2990) 0 * * Os_TE_791996 Chr1 10811655 10810792 + MUDRN2_OS 756 0.2992 (896/2995) 1 Intact Os_TE_791995 Os_TE_791995 Chr1 10810792 10811650 - MUDRN1_OS 764 0.2967 (887/2990) 1 Intact Os_TE_791996 Os_TE_791993 Chr1 10809314 10809114 - ORSgTEMT02000063 217 0.3094 (892/2883) 1 Intact * Os_TE_791981 Chr1 10804155 10804156 + COPIA2-LTR_OS 6433 0.0007 (2/2976) 0 * Os_TE_791980 Os_TE_791980 Chr1 10804151 10804150 - COPIA2-LTR_OS 6433 0.0007 (2/2977) 0 * Os_TE_791981 Os_TE_791919 Chr1 10750731 10750732 + COPIA2-LTR_OS 6433 0.0003 (1/2974) 0 * Os_TE_791918 Os_TE_791918 Chr1 10750727 10750726 - COPIA2-LTR_OS 6433 0.0007 (2/2982) 0 * Os_TE_791919 Os_TE_791843 Chr1 10710160 10710159 + CACTA-B 1103 0.0217 (65/2989) 0 * Os_TE_791842 Os_TE_791842 Chr1 10710156 10710157 + ORSgTETN00200005 1121 0.0225 (67/2979) 0 * Os_TE_791843 Os_TE_791835 Chr1 10707352 10707103 - ORSgTEMT00900099 250 0.3635 (925/2545) 1 Intact Os_TE_791831 Os_TE_791831 Chr1 10707105 10707345 - ORSgTEMT00900965 216 0.3040 (910/2993) 1 Intact Os_TE_791835 Os_TE_791820 Chr1 10703532 10703533 - ORSgTETNOOT01930 140 0.7018 (2073/2954) 0 * * Os_TE_791819 Chr1 10703253 10703252 + ORSgTEMT01601219 235 0.6988 (2053/2938) 0 * * Os_TE_791818 Chr1 10700877 10700878 - RIREX_LTR 8828 0.0004 (1/2597) 0 * * Os_TE_791739 Chr1 10664441 10664442 - RIREX_LTR 8828 0.0003 (1/2986) 0 * Os_TE_791738 Os_TE_791738 Chr1 10664437 10664436 + RIREX_LTR 8828 0.0007 (2/2983) 0 * Os_TE_791739 Os_TE_791713 Chr1 10653473 10653474 + ORSiTERTOOT00296 5553 0.0003 (1/2992) 0 * Os_TE_791712 Os_TE_791712 Chr1 10653469 10653468 - SC-3_LTR 5748 0.0003 (1/2993) 0 * Os_TE_791713 Os_TE_791711 Chr1 10651859 10651860 - COPI2_LTR 4733 0.0003 (1/2985) 0 * * Os_TE_791710 Chr1 10651208 10651209 + ORSiTERTOOT00296 5553 0.0007 (2/2996) 0 * Os_TE_791709 Os_TE_791709 Chr1 10651204 10651203 - SC-3_LTR 5748 0.0007 (2/2996) 0 * Os_TE_791710 Os_TE_791697 Chr1 10643546 10643547 + SC-3_LTR 5748 0.0017 (5/2994) 0 * Os_TE_791696 Os_TE_791696 Chr1 10643542 10643541 - SC-3_LTR 5748 0.0013 (4/2995) 0 * Os_TE_791697 Os_TE_791680 Chr1 10636956 10636957 + ORSiTERTOOT00074 4935 0.0011 (1/939) 0 * Os_TE_791679 Os_TE_791679 Chr1 10636945 10636944 - ORSiTERTOOT00074 4935 0.0634 (190/2997) 0 * Os_TE_791680 Os_TE_791663 Chr1 10619872 10619873 - MPING 430 0.0285 (85/2981) 0 * Os_TE_791662 Os_TE_791662 Chr1 10619870 10619869 + MPING 430 0.0288 (86/2987) 0 * Os_TE_791663 Os_TE_791612 Chr1 10607465 10607464 + ORSgTETNOOT00908 242 0.1344 (402/2992) 0 * * Os_TE_791601 Chr1 10604505 10604504 + STOWAWAY51_OS 246 0.0010 (3/2919) 0 * * Os_TE_791596 Chr1 10602922 10602665 + F770 284 0.1041 (309/2967) 1 Intact * Os_TE_791522 Chr1 10577907 10577908 - RIREX_LTR 8828 0.0003 (1/2936) 0 * * Os_TE_791520 Chr1 10577789 10577790 + SPMLIKE 10989 0.0009 (1/1078) 0 * * Os_TE_791496 Chr1 10558155 10558156 - AMYLTP 383 0.3886 (1157/2977) 0 * Os_TE_791495 Os_TE_791495 Chr1 10558147 10558146 + AMYLTP 383 0.3892 (1161/2983) 0 * Os_TE_791496 Os_TE_791399 Chr1 10513845 10513844 - STOWAWAY51_OS 246 0.0004 (1/2739) 0 * * Os_TE_791394 Chr1 10512971 10512972 + RIREX_LTR 8828 0.0003 (1/2990) 0 * * Os_TE_791383 Chr1 10509447 10509446 - RIREX_LTR 8828 0.0004 (1/2844) 0 * * Os_TE_791381 Chr1 10507143 10507144 - RIREX_LTR 8828 0.0003 (1/2996) 0 * Os_TE_791380 Os_TE_791380 Chr1 10507139 10507138 + RIREX_LTR 8828 0.0003 (1/2998) 0 * Os_TE_791381 Os_TE_791377 Chr1 10505263 10505403 + TELIA 141 0.2998 (880/2935) 1 Intact * Os_TE_791369 Chr1 10500976 10504773 - TEMPINDAS 4259 0.3234 (905/2798) 1 Intact * Os_TE_791368 Chr1 10500952 10500953 - JOUZHENA 607 0.0676 (191/2825) 0 * Os_TE_791367 Os_TE_791367 Chr1 10500945 10500944 + JOUZHENA 607 0.0257 (51/1983) 0 * Os_TE_791368 Os_TE_791360 Chr1 10494272 10494273 - COPI2_LTR 4733 0.0003 (1/2992) 0 * Os_TE_791359 Os_TE_791359 Chr1 10494268 10494267 + COPI2_LTR 4733 0.0003 (1/2992) 0 * Os_TE_791360 Os_TE_791358 Chr1 10493275 10493276 + ORSiTERTOOT00296 5553 0.0003 (1/2994) 0 * Os_TE_791357 Os_TE_791357 Chr1 10493271 10493270 - SC-3_LTR 5748 0.0003 (1/2997) 0 * Os_TE_791358 Os_TE_791281 Chr1 10464675 10464674 + ORSgTETNOOT01930 140 0.0003 (1/2972) 0 * * Os_TE_791279 Chr1 10464307 10463042 + CACTA-M 1129 0.2889 (849/2939) 1 Intact Os_TE_791278 Os_TE_791278 Chr1 10463042 10464307 - ORSgTETN00200001 10994 0.2975 (882/2965) 1 Intact Os_TE_791279 Os_TE_791226 Chr1 10439867 10439868 + ENSPM5_OS 9581 0.5874 (1680/2860) 0 * Os_TE_791225 Os_TE_791225 Chr1 10439865 10439864 - ENSPM6_OS 9815 0.6010 (1773/2950) 0 * Os_TE_791226 Os_TE_791194 Chr1 10430979 10430980 - ORSgTEMT00700002 381 0.0007 (2/2926) 0 * * Os_TE_791154 Chr1 10403027 10403026 - TELIA 141 0.0003 (1/2910) 0 * * Os_TE_791152 Chr1 10402343 10402342 + ORSgTETNOOT00908 242 0.0003 (1/2974) 0 * * Os_TE_791122 Chr1 10380647 10387428 - OSTE33 1012 0.2825 (829/2935) 1 Intact * Os_TE_791110 Chr1 10375267 10375268 - ORSgTETN00200001 10994 0.0003 (1/2988) 0 * Os_TE_791109 Os_TE_791109 Chr1 10375265 10375264 + SPMLIKE 10989 0.0003 (1/2983) 0 * Os_TE_791110 Os_TE_791091 Chr1 10371741 10371740 + SPMLIKE 10989 0.0003 (1/2983) 0 * * Os_TE_791084 Chr1 10369281 10369280 - INDITTO 263 0.0199 (58/2911) 0 * * Os_TE_791071 Chr1 10360120 10360121 - RIREX_LTR 8828 0.0003 (1/2958) 0 * Os_TE_791070 Os_TE_791070 Chr1 10360116 10360115 + RIREX_LTR 8828 0.0003 (1/2956) 0 * Os_TE_791071 Os_TE_791062 Chr1 10355957 10355956 + TRUNCATOR 2918 0.0003 (1/2989) 0 * * Os_TE_791060 Chr1 10353135 10353136 + KIDDOC 275 0.0003 (1/2999) 0 * Os_TE_791059 Os_TE_791059 Chr1 10353131 10353130 - KIDDOC 275 0.0003 (1/2999) 0 * Os_TE_791060 Os_TE_791019 Chr1 10331988 10331987 + RETROSAT4_LTR 13504 0.0007 (2/2995) 0 * * Os_TE_790999 Chr1 10321895 10321896 + ORSiTERTOOT00074 4935 0.0074 (22/2981) 0 * Os_TE_790998 Os_TE_790998 Chr1 10321891 10321890 - ORSiTERTOOT00074 4935 0.0077 (23/2977) 0 * Os_TE_790999 Os_TE_790993 Chr1 10320033 10320032 - DNAUN1_OS 408 0.0013 (4/2992) 0 * * Os_TE_790992 Chr1 10319584 10319585 + COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_790991 Os_TE_790991 Chr1 10319580 10319579 - COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_790992 Os_TE_790990 Chr1 10318915 10318916 - COPI2_LTR 4733 0.0013 (4/2999) 0 * Os_TE_790989 Os_TE_790989 Chr1 10318911 10318910 + COPI2_LTR 4733 0.0010 (3/2995) 0 * Os_TE_790990 Os_TE_790987 Chr1 10318569 10318568 + COPI2_LTR 4733 0.0078 (23/2936) 0 * * Os_TE_790978 Chr1 10311132 10311131 + ORSgTEMT01601591 242 0.0018 (5/2725) 0 * * Os_TE_790976 Chr1 10310510 10310511 + MPING 430 0.0003 (1/2900) 0 * Os_TE_790975 Os_TE_790975 Chr1 10310508 10310507 - MPING 430 0.0003 (1/2881) 0 * Os_TE_790976 Os_TE_790902 Chr1 10281919 10281920 + SPMLIKE 10989 0.0004 (1/2618) 0 * Os_TE_790901 Os_TE_790901 Chr1 10281917 10281916 - ORSgTETN00200001 10994 0.0004 (1/2620) 0 * Os_TE_790902 Os_TE_790897 Chr1 10281302 10281301 - STOWAWAY11_OS 292 0.0017 (4/2326) 0 * * Os_TE_790892 Chr1 10275268 10275267 + ORSgTEMT01601591 242 0.0003 (1/2997) 0 * Os_TE_790891 Os_TE_790891 Chr1 10275265 10275266 + ORSgTEMT01601591 242 0.0003 (1/2995) 0 * Os_TE_790892 Os_TE_790889 Chr1 10272727 10272728 + SC-8_LTR 4951 0.0074 (22/2992) 0 * Os_TE_790888 Os_TE_790888 Chr1 10272723 10272722 - SC-8_LTR 4951 0.0063 (19/2996) 0 * Os_TE_790889 Os_TE_790887 Chr1 10270106 10270107 - SC-8_LTR 4951 0.0003 (1/2994) 0 * Os_TE_790886 Os_TE_790886 Chr1 10270102 10270101 + SC-8_LTR 4951 0.0003 (1/2991) 0 * Os_TE_790887 Os_TE_790884 Chr1 10269324 10269325 + ORSiTERTOOT00296 5553 0.0003 (1/2984) 0 * Os_TE_790883 Os_TE_790883 Chr1 10269320 10269319 - SC-3_LTR 5748 0.0003 (1/2981) 0 * Os_TE_790884 Os_TE_790871 Chr1 10262090 10262091 - CENTRE 280 0.0020 (6/2978) 0 * * Os_TE_790864 Chr1 10259004 10247731 + SPMLIKE 10989 0.2913 (860/2952) 1 Intact Os_TE_790855 Os_TE_790855 Chr1 10247731 10259005 - ORSgTETN00200001 10994 0.2900 (855/2948) 1 Intact Os_TE_790864 Os_TE_790853 Chr1 10247183 10247182 + COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * * Os_TE_790851 Chr1 10246881 10246882 + STOWAWAY51_OS 246 0.0003 (1/2998) 0 * * Os_TE_790850 Chr1 10246481 10246482 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_790849 Os_TE_790849 Chr1 10246477 10246476 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_790850 Os_TE_790848 Chr1 10245449 10245450 - STOWAWAY17_OS 259 0.0013 (4/2986) 0 * Os_TE_790847 Os_TE_790847 Chr1 10245429 10245428 - RIREX_LTR 8828 0.0003 (1/2972) 0 * Os_TE_790848 Os_TE_790824 Chr1 10237913 10237912 - COPIA2-LTR_OS 6433 0.0003 (1/2966) 0 * * Os_TE_790818 Chr1 10234082 10234081 + ORSgTETNOOT00072 203 0.0020 (6/2993) 0 * * Os_TE_790802 Chr1 10224462 10224463 - SZ-22_LTR 4403 0.0010 (3/2991) 0 * * Os_TE_790798 Chr1 10220842 10219868 + RPO_OS 1983 0.2974 (883/2969) 1 Intact Os_TE_790797 Os_TE_790797 Chr1 10219868 10220842 - RPO_OS 1983 0.3005 (896/2982) 1 Intact Os_TE_790798 Os_TE_790755 Chr1 10191633 10191634 + COPIA2-LTR_OS 6433 0.0004 (1/2669) 0 * Os_TE_790754 Os_TE_790754 Chr1 10191629 10191628 - COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_790755 Os_TE_790748 Chr1 10190405 10190167 + ORSgTEMT01602181 239 0.2999 (885/2951) 1 Intact Os_TE_790747 Os_TE_790747 Chr1 10190167 10190405 - ORSgTEMT01601432 239 0.3020 (890/2947) 1 Intact Os_TE_790748 Os_TE_790735 Chr1 10188517 10188516 - TELIA 141 0.0010 (3/2968) 0 * * Os_TE_790688 Chr1 10173196 10173195 + SPMLIKE 10989 0.5781 (1669/2887) 0 * * Os_TE_790670 Chr1 10170880 10170879 - STOWAWAY51_OS 246 0.0023 (7/2982) 0 * * Os_TE_790638 Chr1 10154619 10154620 + DS-RICE3N 525 0.0003 (1/2931) 0 * * Os_TE_790634 Chr1 10153728 10153727 + OSTE9 421 0.0012 (3/2521) 0 * * Os_TE_790603 Chr1 10142936 10142937 - CACTA-H 1152 0.0003 (1/2996) 0 * * Os_TE_790562 Chr1 10131200 10131201 - COPIA2-LTR_OS 6433 0.0672 (201/2993) 0 * Os_TE_790561 Os_TE_790561 Chr1 10131196 10131195 + COPIA2-LTR_OS 6433 0.0562 (167/2971) 0 * Os_TE_790562 Os_TE_790559 Chr1 10130237 10130238 + RETROSAT4_LTR 13504 0.0017 (5/2993) 0 * Os_TE_790558 Os_TE_790558 Chr1 10130233 10130232 - SZ-35LTR 3853 0.0017 (5/2991) 0 * Os_TE_790559 Os_TE_790526 Chr1 10116624 10116625 - SC-8_LTR 4951 0.0007 (2/2990) 0 * Os_TE_790525 Os_TE_790525 Chr1 10116620 10116619 + SC-8_LTR 4951 0.0007 (2/2990) 0 * Os_TE_790526 Os_TE_790523 Chr1 10114189 10114188 + STOWAWAY51_OS 246 0.0003 (1/2993) 0 * Os_TE_790522 Os_TE_790522 Chr1 10114183 10114184 - STOWAWAY51_OS 246 0.0003 (1/2997) 0 * Os_TE_790523 Os_TE_790516 Chr1 10111917 10111918 - F569 228 0.0003 (1/2993) 0 * Os_TE_790515 Os_TE_790515 Chr1 10111915 10111914 + F569 228 0.0003 (1/2993) 0 * Os_TE_790516 Os_TE_790501 Chr1 10103356 10103357 - INDITTO 263 0.0022 (6/2781) 0 * Os_TE_790500 Os_TE_790500 Chr1 10103354 10103353 + INDITTO 263 0.0026 (5/1941) 0 * Os_TE_790501 Os_TE_790498 Chr1 10099114 10099113 - SINE9_OS 293 0.0014 (4/2927) 0 * * Os_TE_790473 Chr1 10081518 10081519 + RIRE3_LTR 12054 0.0007 (2/2980) 0 * Os_TE_790472 Os_TE_790472 Chr1 10081514 10081513 - RIRE3_LTR 12054 0.0007 (2/2980) 0 * Os_TE_790473 Os_TE_790470 Chr1 10080208 10080209 + MERMITE18B 1306 0.0003 (1/2901) 0 * * Os_TE_790451 Chr1 10068988 10068989 + RPO_OS 1983 0.0696 (208/2989) 0 * * Os_TE_790450 Chr1 10068464 10068465 - CLOUD-6 508 0.0257 (77/2992) 0 * Os_TE_790449 Os_TE_790449 Chr1 10068456 10068455 + CLOUD-6 508 0.0254 (76/2994) 0 * Os_TE_790450 Os_TE_790448 Chr1 10068381 10068382 - MPING 430 0.0003 (1/2990) 0 * * Os_TE_790429 Chr1 10058832 10058833 - SZ-62LTR 3649 0.0645 (193/2990) 0 * Os_TE_790428 Os_TE_790428 Chr1 10058828 10058827 + SZ-62LTR 3649 0.0638 (191/2993) 0 * Os_TE_790429 Os_TE_790414 Chr1 10051957 10051956 - STOWAWAY51_OS 246 0.0003 (1/2993) 0 * Os_TE_790413 Os_TE_790413 Chr1 10051951 10051952 + STOWAWAY51_OS 246 0.0003 (1/2997) 0 * Os_TE_790414 Os_TE_790401 Chr1 10050704 10050705 - INDITTO 263 0.5125 (1512/2950) 0 * Os_TE_790400 Os_TE_790400 Chr1 10050702 10050701 + ORSgTETNOOT02316 263 0.5131 (1528/2978) 0 * Os_TE_790401 Os_TE_790351 Chr1 10016699 10016700 + TELIA 141 0.0003 (1/2970) 0 * * Os_TE_790344 Chr1 10008408 10008138 + Cassandra_OS-LTR 764 0.3222 (965/2995) 1 Solo_LTR Os_TE_790342 Os_TE_790342 Chr1 10008138 10008407 - Cassandra_OS-LTR 764 0.3204 (960/2996) 1 Solo_LTR Os_TE_790344 Os_TE_790328 Chr1 10001967 9989029 - RETRO2_LTR 12874 0.3253 (958/2945) 1 Intact * Os_TE_790307 Chr1 9988268 9988269 + XIKE 594 0.0047 (14/2966) 0 * * Os_TE_790190 Chr1 9938658 9938659 - SC-8_LTR 4951 0.0027 (8/2949) 0 * * Os_TE_790187 Chr1 9936068 9936067 - TNR2A 152 0.0093 (28/2996) 0 * * Os_TE_790156 Chr1 9911166 9911167 + KIDDOC 275 0.0003 (1/2993) 0 * Os_TE_790155 Os_TE_790155 Chr1 9911162 9911161 - KIDDOC 275 0.0007 (2/2990) 0 * Os_TE_790156 Os_TE_790088 Chr1 9897440 9897439 + INDITTO 263 0.0003 (1/2952) 0 * * Os_TE_790073 Chr1 9893056 9893055 - COPI2_LTR 4733 0.0003 (1/2995) 0 * * Os_TE_790068 Chr1 9886825 9886824 + ORSgTEMT00700017 386 0.0014 (4/2812) 0 * Os_TE_790067 Os_TE_790067 Chr1 9886817 9886818 + ORSgTEMT00700017 386 0.0003 (1/2988) 0 * Os_TE_790068 Os_TE_790054 Chr1 9874217 9874218 + MPING 430 0.0004 (1/2735) 0 * Os_TE_790053 Os_TE_790053 Chr1 9874215 9874214 - MPING 430 0.0004 (1/2728) 0 * Os_TE_790054 Os_TE_790052 Chr1 9874010 9874011 + COPIA2-LTR_OS 6433 0.0007 (2/2954) 0 * Os_TE_790051 Os_TE_790051 Chr1 9874006 9874005 - COPIA2-LTR_OS 6433 0.0007 (2/2944) 0 * Os_TE_790052 Os_TE_789994 Chr1 9853065 9853064 - INDITTO 263 0.0252 (74/2932) 0 * * Os_TE_789930 Chr1 9831841 9831842 + COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * * Os_TE_789916 Chr1 9822613 9822612 - ORSgTEMT00700002 381 0.0003 (1/2989) 0 * Os_TE_789915 Os_TE_789915 Chr1 9822607 9822608 - ORSgTEMT00700002 381 0.0003 (1/2994) 0 * Os_TE_789916 Os_TE_789839 Chr1 9780518 9781886 - ORSiCMCM00100016 1387 0.8815 (1347/1528) -1 Intact * Os_TE_789775 Chr1 9761931 9762612 - CLOUD-2 711 0.4736 (1247/2633) 0.83 Intact * Os_TE_789773 Chr1 9761120 9761121 - COPIA2-LTR_OS 6433 0.0229 (68/2967) 0 * Os_TE_789772 Os_TE_789772 Chr1 9761116 9761115 + COPIA2-LTR_OS 6433 0.0222 (66/2967) 0 * Os_TE_789773 Os_TE_789744 Chr1 9742471 9742472 - SC-8_LTR 4951 0.0003 (1/2993) 0 * Os_TE_789743 Os_TE_789743 Chr1 9742467 9742466 + SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_789744 Os_TE_789671 Chr1 9717515 9717516 - COPIA2-LTR_OS 6433 0.0004 (1/2661) 0 * Os_TE_789670 Os_TE_789670 Chr1 9717511 9717510 + COPIA2-LTR_OS 6433 0.0003 (1/2919) 0 * Os_TE_789671 Os_TE_789656 Chr1 9714699 9714700 - SZ-22_LTR 4403 0.0003 (1/2986) 0 * * Os_TE_789596 Chr1 9691536 9691537 + COPIA2-LTR_OS 6433 0.0004 (1/2672) 0 * * Os_TE_789580 Chr1 9681767 9681766 + GYPSY-A_LTR 8951 0.6007 (1789/2978) 0 * * Os_TE_789563 Chr1 9662989 9662990 + RETROSAT2LTR 12796 0.5975 (1752/2932) 0 * Os_TE_789562 Os_TE_789562 Chr1 9662987 9662986 - RETROSAT2LTR 12796 0.6102 (1824/2989) 0 * Os_TE_789563 Os_TE_789533 Chr1 9653693 9653694 + INDITTO 263 0.6912 (2055/2973) 0 * Os_TE_789532 Os_TE_789532 Chr1 9653691 9653690 - INDITTO 263 0.6941 (2060/2968) 0 * Os_TE_789533 Os_TE_789519 Chr1 9649368 9649369 + SC-8_LTR 4951 0.0003 (1/2979) 0 * Os_TE_789518 Os_TE_789518 Chr1 9649364 9649363 - SC-8_LTR 4951 0.0003 (1/2980) 0 * Os_TE_789519 Os_TE_789512 Chr1 9644331 9644330 - ORSgTEMT02400179 221 0.5891 (1696/2879) 0 * * Os_TE_789511 Chr1 9644250 9644251 + ORSgTETNOOT01834 251 0.0014 (4/2908) 0 * Os_TE_789510 Os_TE_789510 Chr1 9644248 9644247 + ORSgTETNOOT01834 251 0.0014 (4/2917) 0 * Os_TE_789511 Os_TE_789503 Chr1 9641743 9641744 + ORSiTERTOOT00226 792 0.0003 (1/2996) 0 * Os_TE_789502 Os_TE_789502 Chr1 9641739 9641738 - SZ-22_LTR 4403 0.0003 (1/2995) 0 * Os_TE_789503 Os_TE_789463 Chr1 9619046 9624783 - SC-3_LTR 5748 0.8927 (2663/2983) 1 Intact * Os_TE_789444 Chr1 9612188 9612189 + INDITTO 263 0.0370 (108/2915) 0 * Os_TE_789443 Os_TE_789443 Chr1 9612186 9612185 - INDITTO 263 0.0369 (108/2926) 0 * Os_TE_789444 Os_TE_789419 Chr1 9606291 9606292 - INDITTO 263 0.0730 (217/2974) 0 * Os_TE_789418 Os_TE_789418 Chr1 9606289 9606288 + INDITTO 263 0.0736 (217/2950) 0 * Os_TE_789419 Os_TE_789361 Chr1 9590145 9590146 - HARB-1_OS 5166 0.0003 (1/2952) 0 * Os_TE_789360 Os_TE_789360 Chr1 9590143 9590142 + HARB-1_OS 5166 0.0003 (1/2956) 0 * Os_TE_789361 Os_TE_789325 Chr1 9585227 9584996 - ORSgTETNOOT00880 242 0.3057 (854/2794) 1 Intact * Os_TE_789303 Chr1 9573935 9580411 + COPIA2-LTR_OS 6433 0.3038 (902/2969) 1 Intact * Os_TE_789297 Chr1 9569819 9569820 - ORSgTERT00201385 8846 0.0010 (3/2970) 0 * * Os_TE_789264 Chr1 9559888 9559887 + STOWAWAY21_OS 243 0.0604 (180/2978) 0 * * Os_TE_789240 Chr1 9553292 9553293 + ORSgTEMT00500476 150 0.5232 (1251/2391) 0 * * Os_TE_789214 Chr1 9530905 9530906 - ORSgTEMT02400179 221 0.0010 (3/2988) 0 * Os_TE_789213 Os_TE_789213 Chr1 9530904 9530903 - TYPEM 227 0.0010 (3/2988) 0 * Os_TE_789214 Os_TE_789194 Chr1 9520215 9520216 + COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_789193 Os_TE_789193 Chr1 9520211 9520210 - COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_789194 Os_TE_789163 Chr1 9514026 9514027 + ORSiTERT00400003 330 0.6519 (1944/2982) 0 * * Os_TE_789136 Chr1 9491028 9491027 + OLO24 345 0.0009 (2/2194) -1 * Os_TE_789135 Os_TE_789135 Chr1 9490980 9490981 - OLO24 345 0.0009 (2/2323) 0 * Os_TE_789136 Os_TE_789102 Chr1 9473258 9473259 - ORSgTERT00201174 430 0.0003 (1/2991) 0 * * Os_TE_789099 Chr1 9471887 9471888 - SC-3_LTR 5748 0.0003 (1/2979) 0 * Os_TE_789098 Os_TE_789098 Chr1 9471883 9471882 + ORSiTERTOOT00296 5553 0.0003 (1/2979) 0 * Os_TE_789099 Os_TE_789096 Chr1 9471041 9471042 + SZ-54_LTR 5203 0.0003 (1/2978) 0 * * Os_TE_789040 Chr1 9442397 9442398 + SC-8_LTR 4951 0.0007 (2/2993) 0 * Os_TE_789039 Os_TE_789039 Chr1 9442393 9442392 - SC-8_LTR 4951 0.0007 (2/2992) 0 * Os_TE_789040 Os_TE_789029 Chr1 9431702 9431703 + RIRE2_LTR 11306 0.0007 (2/2995) 0 * Os_TE_789028 Os_TE_789028 Chr1 9431698 9431697 - RIRE2_LTR 11306 0.0007 (2/2994) 0 * Os_TE_789029 Os_TE_789025 Chr1 9430854 9430855 - INDITTO 263 0.0018 (4/2213) 0 * Os_TE_789024 Os_TE_789024 Chr1 9430852 9430851 + INDITTO 263 0.0018 (4/2186) 0 * Os_TE_789025 Os_TE_788988 Chr1 9404016 9404017 + COPI2_LTR 4733 0.0017 (5/2992) 0 * Os_TE_788987 Os_TE_788987 Chr1 9404012 9404011 - COPI2_LTR 4733 0.0017 (5/2995) 0 * Os_TE_788988 Os_TE_788963 Chr1 9393083 9393084 - RETROSAT3_LTR 11537 0.0007 (2/2995) 0 * * Os_TE_788952 Chr1 9388882 9388883 - SC-8_LTR 4951 0.0003 (1/2995) 0 * Os_TE_788951 Os_TE_788951 Chr1 9388878 9388877 + SC-8_LTR 4951 0.0003 (1/2997) 0 * Os_TE_788952 Os_TE_788941 Chr1 9379301 9379302 + ORSgTERT00200924 3299 0.0003 (1/2977) 0 * * Os_TE_788867 Chr1 9343615 9343616 + SZ-55_LTR 10318 0.0003 (1/2995) 0 * Os_TE_788866 Os_TE_788866 Chr1 9343611 9343610 - SZ-55_LTR 10318 0.0003 (1/2995) 0 * Os_TE_788867 Os_TE_788853 Chr1 9338347 9338348 - RIREX_LTR 8828 0.0004 (1/2658) 0 * Os_TE_788852 Os_TE_788852 Chr1 9338343 9338342 + RIREX_LTR 8828 0.0004 (1/2666) 0 * Os_TE_788853 Os_TE_788747 Chr1 9298385 9298386 - YIREN 905 0.0017 (5/2978) 0 * * Os_TE_788743 Chr1 9297389 9297388 - TEMPINDAS 4259 0.0057 (17/2973) 0 * * Os_TE_788733 Chr1 9295082 9295083 - COPIA2-LTR_OS 6433 0.0003 (1/2936) 0 * Os_TE_788732 Os_TE_788732 Chr1 9295078 9295077 + COPIA2-LTR_OS 6433 0.0003 (1/2935) 0 * Os_TE_788733 Os_TE_788731 Chr1 9294960 9294961 - COPIA2-LTR_OS 6433 0.0014 (4/2931) 0 * Os_TE_788730 Os_TE_788730 Chr1 9294956 9294955 + COPIA2-LTR_OS 6433 0.0010 (3/2925) 0 * Os_TE_788731 Os_TE_788725 Chr1 9293287 9293288 + RIREX_LTR 8828 0.0006 (1/1563) 0 * Os_TE_788724 Os_TE_788724 Chr1 9293283 9293282 - RIREX_LTR 8828 0.0003 (1/2944) 0 * Os_TE_788725 Os_TE_788692 Chr1 9287310 9287311 - RIRE3_LTR 12054 0.7119 (215/302) -1 * * Os_TE_788572 Chr1 9238305 9238304 + OSTE15 1168 0.0358 (105/2934) 0 * * Os_TE_788564 Chr1 9233377 9233378 + ORSiTERTOOT00296 5553 0.0003 (1/2977) 0 * Os_TE_788563 Os_TE_788563 Chr1 9233373 9233372 - SC-3_LTR 5748 0.0003 (1/2968) 0 * Os_TE_788564 Os_TE_788542 Chr1 9222432 9222431 - LIER 339 0.0013 (4/2998) 0 * * Os_TE_788541 Chr1 9222377 9222376 + ORSgTETNOOT00032 218 0.0827 (248/2999) 0 * * Os_TE_788528 Chr1 9214588 9215554 + SZ-9LTR 965 0.3786 (1131/2987) 1 Intact * Os_TE_788479 Chr1 9193858 9193857 + ORSgTEMT01601591 242 0.0003 (1/2994) 0 * Os_TE_788478 Os_TE_788478 Chr1 9193855 9193856 + ORSgTEMT01601591 242 0.0003 (1/2993) 0 * Os_TE_788479 Os_TE_788476 Chr1 9191666 9191667 + MPING 430 0.0004 (1/2841) 0 * Os_TE_788475 Os_TE_788475 Chr1 9191664 9191663 - MPING 430 0.0003 (1/2867) 0 * Os_TE_788476 Os_TE_788474 Chr1 9191503 9191504 + TWIF 586 0.0004 (1/2809) 0 * * Os_TE_788446 Chr1 9186609 9186608 - SZ-5LIKE 1064 0.0003 (1/2990) 0 * * Os_TE_788432 Chr1 9183878 9183877 + TRUNCATOR 2918 0.0007 (2/2988) 0 * * Os_TE_788404 Chr1 9169134 9169135 - SC-3_LTR 5748 0.0090 (27/2984) 0 * Os_TE_788403 Os_TE_788403 Chr1 9169130 9169129 + ORSiTERTOOT00296 5553 0.0087 (26/2985) 0 * Os_TE_788404 Os_TE_788393 Chr1 9155036 9155035 + ORSgTEMT01601934 207 0.0003 (1/2961) 0 * * Os_TE_788369 Chr1 9150780 9149876 - ORSiTETNOOT00107 906 0.8978 (2654/2956) 1 Intact Os_TE_788368 Os_TE_788368 Chr1 9149873 9150777 + ORSiTETNOOT00107 906 0.8980 (2659/2961) 1 Intact Os_TE_788369 Os_TE_788350 Chr1 9146891 9146892 + ORSgTEMT00500491 152 0.2959 (875/2957) 0 * * Os_TE_788288 Chr1 9117452 9117451 + ORSgTEMT01601591 242 0.0017 (5/2980) 0 * Os_TE_788287 Os_TE_788287 Chr1 9117449 9117450 + ORSgTEMT01601591 242 0.0017 (5/2958) 0 * Os_TE_788288 Os_TE_788278 Chr1 9112054 9112055 + TELIA 141 0.0004 (1/2752) 0 * Os_TE_788277 Os_TE_788277 Chr1 9112046 9112045 - TELIA 141 0.0003 (1/2925) 0 * Os_TE_788278 Os_TE_788271 Chr1 9109118 9109119 + ORSgTEMT00600181 353 0.0014 (4/2946) 0 * Os_TE_788270 Os_TE_788270 Chr1 9109117 9109116 + ORSgTEMT00600120 364 0.0017 (5/2943) 0 * Os_TE_788271 Os_TE_788253 Chr1 9103580 9103581 + ORSiTERTOOT00155 289 0.0003 (1/2905) 0 * * Os_TE_788233 Chr1 9092302 9092303 + COPI2_LTR 4733 0.0017 (5/2983) 0 * Os_TE_788232 Os_TE_788232 Chr1 9092298 9092297 - COPI2_LTR 4733 0.0013 (4/2976) 0 * Os_TE_788233 Os_TE_788222 Chr1 9091060 9091061 - OSCOPIA1_LTR 4754 0.0027 (8/2985) 0 * Os_TE_788221 Os_TE_788221 Chr1 9091056 9091055 + OSCOPIA1_LTR 4754 0.0030 (9/2994) 0 * Os_TE_788222 Os_TE_788204 Chr1 9086986 9086987 + CASTAWAY 364 0.5121 (1526/2980) 0 * * Os_TE_788193 Chr1 9082601 9082602 - ORSgTEMT01600201 236 0.0003 (1/2983) 0 * * Os_TE_788125 Chr1 9054474 9054475 + SZ-40LTR 2465 0.0007 (2/2994) 0 * * Os_TE_788077 Chr1 9035443 9029158 + MDR2 6967 0.4896 (1441/2943) 1 Intact Os_TE_788076 Os_TE_788076 Chr1 9029149 9035443 - MDR2 6967 0.4795 (1390/2899) 1 Intact Os_TE_788077 Os_TE_788056 Chr1 9010840 9010841 - RETRO2_LTR 12874 0.0107 (31/2909) 0 * Os_TE_788055 Os_TE_788055 Chr1 9010836 9010835 + RETRO2A_LTR 12895 0.0110 (32/2904) 0 * Os_TE_788056 Os_TE_788045 Chr1 9007448 9007449 + HELITRON2_OS 15167 0.0003 (1/2998) 0 * * Os_TE_788042 Chr1 9005984 9005985 - SC-8_LTR 4951 0.0003 (1/2998) 0 * Os_TE_788041 Os_TE_788041 Chr1 9005980 9005979 + ORSiTERTOOT00381 4988 0.0003 (1/2995) 0 * Os_TE_788042 Os_TE_788040 Chr1 9004753 9004752 - ORSgTEMT00901071 248 0.0003 (1/2985) 0 * * Os_TE_787986 Chr1 8987746 8987747 - KRISPIE 956 0.0003 (1/2964) 0 * * Os_TE_787962 Chr1 8973010 8973009 - ORSgTEMT01600152 226 0.0014 (4/2910) 0 * * Os_TE_787958 Chr1 8971647 8971648 + MPING 430 0.0003 (1/2988) 0 * Os_TE_787957 Os_TE_787957 Chr1 8971645 8971644 - MPING 430 0.0003 (1/2984) 0 * Os_TE_787958 Os_TE_787954 Chr1 8971475 8971476 - ORSgTEMT00900467 235 0.0013 (4/2987) 0 * * Os_TE_787929 Chr1 8962811 8962812 - COPI2_LTR 4733 0.0003 (1/2997) 0 * Os_TE_787928 Os_TE_787928 Chr1 8962807 8962806 + COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_787929 Os_TE_787906 Chr1 8954588 8954589 - COPIA2-LTR_OS 6433 0.0007 (2/2973) 0 * Os_TE_787905 Os_TE_787905 Chr1 8954584 8954583 + COPIA2-LTR_OS 6433 0.0007 (2/2978) 0 * Os_TE_787906 Os_TE_787873 Chr1 8941724 8941725 - SC-3_LTR 5748 0.0005 (1/1879) 0 * Os_TE_787872 Os_TE_787872 Chr1 8941720 8941719 + ORSiTERTOOT00296 5553 0.0005 (1/1882) 0 * Os_TE_787873 Os_TE_787865 Chr1 8935284 8935285 + ORSiTERTOOT00296 5553 0.0003 (1/2995) 0 * * Os_TE_787861 Chr1 8934529 8934530 - SC-3_LTR 5748 0.0017 (5/2995) 0 * Os_TE_787860 Os_TE_787860 Chr1 8934525 8934524 + ORSiTERTOOT00296 5553 0.0017 (5/2997) 0 * Os_TE_787861 Os_TE_787842 Chr1 8925487 8925486 - STOWAWAY51_OS 246 0.0003 (1/2954) 0 * Os_TE_787841 Os_TE_787841 Chr1 8925481 8925482 + STOWAWAY51_OS 246 0.0007 (2/2918) 0 * Os_TE_787842 Os_TE_787840 Chr1 8925215 8925214 + TRUNCATOR2_LTR 2904 0.0038 (5/1320) 0 * * Os_TE_787839 Chr1 8925077 8925078 - ORSgTEMT02400179 221 0.0005 (1/2041) 0 * Os_TE_787838 Os_TE_787838 Chr1 8925076 8925075 - TYPEM 227 0.0005 (1/2040) 0 * Os_TE_787839 Os_TE_787830 Chr1 8915401 8915402 + COPI2_LTR 4733 0.0007 (2/2991) 0 * * Os_TE_787795 Chr1 8907630 8907631 - ORSgTEMT00600085 364 0.4506 (1345/2985) 0 * Os_TE_787794 Os_TE_787794 Chr1 8907628 8907627 + ORSgTEMT00600192 355 0.4463 (1325/2969) 0 * Os_TE_787795 Os_TE_787789 Chr1 8904643 8904642 + ORSiTERTOOT00226 792 0.0007 (2/2948) 0 * * Os_TE_787778 Chr1 8895492 8895493 - SC-8_LTR 4951 0.0003 (1/2985) 0 * Os_TE_787777 Os_TE_787777 Chr1 8895488 8895487 + SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_787778 Os_TE_787768 Chr1 8886349 8886081 - ORSgTEMT06100010 269 0.4299 (1276/2968) 1 Intact Os_TE_787765 Os_TE_787765 Chr1 8886081 8886349 + ORSgTEMT06100010 269 0.4404 (1319/2995) 1 Intact Os_TE_787768 Os_TE_787758 Chr1 8883205 8883206 + ORSgTEMT00501072 147 0.0004 (1/2673) 0 * * Os_TE_787730 Chr1 8875549 8862574 + RETRO2_LTR 12874 0.4349 (1286/2957) 1 Intact Os_TE_787719 Os_TE_787719 Chr1 8862574 8875549 - RETRO2_LTR 12874 0.4358 (1287/2953) 1 Intact Os_TE_787730 Os_TE_787704 Chr1 8858572 8858573 - RIRE2_LTR 11306 0.0003 (1/3000) 0 * Os_TE_787703 Os_TE_787703 Chr1 8858568 8858567 + RIREX_LTR 8828 0.0003 (1/2999) 0 * Os_TE_787704 Os_TE_787682 Chr1 8850361 8850362 + TELIA 141 0.0003 (1/2914) 0 * * Os_TE_787669 Chr1 8840000 8840001 - COPIA2-LTR_OS 6433 0.0012 (3/2543) -1 * * Os_TE_787622 Chr1 8802146 8802147 - OSLINE1-4 4779 0.4217 (1254/2974) 0 * * Os_TE_787617 Chr1 8800239 8800240 - TELIA 141 0.0010 (3/2888) 0 * * Os_TE_787601 Chr1 8798400 8798401 + OLO24 345 0.0014 (4/2927) 0 * * Os_TE_787578 Chr1 8786301 8786302 + MuDR3_OS 8604 0.0014 (4/2906) 0 * Os_TE_787577 Os_TE_787577 Chr1 8786293 8786292 - MuDR3_OS 8604 0.0007 (2/2902) 0 * Os_TE_787578 Os_TE_787574 Chr1 8785460 8785461 - CASTAWAY 364 0.0014 (4/2948) 0 * * Os_TE_787556 Chr1 8771605 8771606 - ORSgTEMT02400179 221 0.0003 (1/2910) 0 * Os_TE_787555 Os_TE_787555 Chr1 8771604 8771603 - TYPEM 227 0.0003 (1/2904) 0 * Os_TE_787556 Os_TE_787534 Chr1 8759404 8759405 - ORSiTETNOOT00134 607 0.0008 (1/1237) -1 * Os_TE_787533 Os_TE_787533 Chr1 8759397 8759396 + TWIF 586 0.0008 (1/1216) -1 * Os_TE_787534 Os_TE_787517 Chr1 8752312 8752311 + COPI2_LTR 4733 0.0003 (1/2998) 0 * * Os_TE_787516 Chr1 8751042 8751043 - STOWAWAY51_OS 246 0.0064 (13/2024) 0 * * Os_TE_787497 Chr1 8741664 8741665 - MUDRN5_OS 374 0.0003 (1/2983) 0 * Os_TE_787496 Os_TE_787496 Chr1 8741661 8741660 - ORSgTEMT00700002 381 0.0003 (1/2979) 0 * Os_TE_787497 Os_TE_787495 Chr1 8741654 8741655 + ORSgTEMT00700017 386 0.0003 (1/2989) 0 * * Os_TE_787484 Chr1 8730822 8730823 + OSTONOR1_LTR 6440 0.0013 (4/2993) 0 * Os_TE_787483 Os_TE_787483 Chr1 8730818 8730817 - ORSiTERT00100062 5674 0.0015 (4/2646) 0 * Os_TE_787484 Os_TE_787422 Chr1 8715182 8716274 + DASIA-2 1198 0.8373 (1842/2200) 1 Intact * Os_TE_787416 Chr1 8713619 8713620 + UNIQUE 158 0.0004 (1/2616) 0 * * Os_TE_787415 Chr1 8713566 8713567 + RETROSAT6_LTR 10490 0.0010 (3/2924) 0 * * Os_TE_787405 Chr1 8712199 8712200 + ORSgTEMT00500128 150 0.1193 (356/2984) 0 * * Os_TE_787386 Chr1 8711094 8711093 - ORSgTEMT00600478 361 0.0049 (13/2641) 0 * * Os_TE_787365 Chr1 8701095 8700218 + OSTE1 801 0.8775 (2465/2809) 1 Intact * Os_TE_787363 Chr1 8699757 8699756 - TYPEM 227 0.0023 (6/2655) 0 * Os_TE_787362 Os_TE_787362 Chr1 8699756 8699757 - ORSgTEMT02400246 177 0.1219 (363/2978) 0 * Os_TE_787363 Os_TE_787354 Chr1 8690529 8690528 - COPIA2-LTR_OS 6433 0.0003 (1/2957) 0 * * Os_TE_787341 Chr1 8686520 8686521 - SC-8_LTR 4951 0.0007 (2/2984) 0 * Os_TE_787340 Os_TE_787340 Chr1 8686516 8686515 + SC-8_LTR 4951 0.0007 (2/2986) 0 * Os_TE_787341 Os_TE_787300 Chr1 8674807 8673650 - OSTE15 1168 0.0571 (170/2979) 1 Intact Os_TE_787299 Os_TE_787299 Chr1 8673649 8674804 - OSTE15 1168 0.0566 (169/2988) 1 Intact Os_TE_787300 Os_TE_787286 Chr1 8670141 8670140 + ORSgTEMT01601122 212 0.0010 (3/2866) 0 * * Os_TE_787267 Chr1 8667456 8667455 - NDNA2TNA_OS 346 0.0010 (3/2873) 0 * * Os_TE_787264 Chr1 8665213 8665212 - ORSiTEMT06000031 317 0.0003 (1/2865) 0 * * Os_TE_787235 Chr1 8656800 8656799 + ORSgTEMT01400012 212 0.0028 (8/2838) 0 * * Os_TE_787206 Chr1 8626108 8626109 + SZ-62LTR 3649 0.0007 (2/2930) 0 * * Os_TE_787205 Chr1 8626080 8616946 + SZ-62LTR 3649 0.8819 (2622/2973) 1 Intact Os_TE_787201 Os_TE_787201 Chr1 8616946 8626080 - SZ-62LTR 3649 0.8822 (2643/2996) 1 Intact Os_TE_787205 Os_TE_787198 Chr1 8616843 8613863 + TRUNCATOR 2918 0.8829 (2639/2989) 1 Intact * Os_TE_787186 Chr1 8612470 8604019 - RIREX_LTR 8828 0.8848 (2641/2985) 1 Intact Os_TE_787181 Os_TE_787181 Chr1 8604019 8612470 + RIREX_LTR 8828 0.8841 (2625/2969) 1 Intact Os_TE_787186 Os_TE_787150 Chr1 8590906 8590907 - COPI2_LTR 4733 0.0007 (2/2971) 0 * Os_TE_787149 Os_TE_787149 Chr1 8590902 8590901 + COPI2_LTR 4733 0.0007 (2/2976) 0 * Os_TE_787150 Os_TE_787112 Chr1 8579017 8579018 - MPING 430 0.0003 (1/2993) 0 * Os_TE_787111 Os_TE_787111 Chr1 8579015 8579014 + MPING 430 0.0003 (1/2995) 0 * Os_TE_787112 Os_TE_787107 Chr1 8575279 8575280 - ORSiTETNOOT00107 906 0.0007 (2/2941) 0 * * Os_TE_787104 Chr1 8574563 8574564 - CASTAWAY 364 0.0961 (269/2800) 0 * Os_TE_787103 Os_TE_787103 Chr1 8574561 8574560 - ORSgTEMT00600304 361 0.0531 (143/2691) 0 * Os_TE_787104 Os_TE_787093 Chr1 8570713 8570712 + ORSgTEMT01701478 178 0.0906 (264/2915) 0 * * Os_TE_787090 Chr1 8569986 8569987 - ORSgTEMT00100124 360 0.0019 (5/2701) 0 * * Os_TE_787078 Chr1 8559735 8559736 + SINE9_OS 293 0.0017 (5/2983) 0 * Os_TE_787077 Os_TE_787077 Chr1 8559723 8559722 - SINE9_OS 293 0.0017 (5/2983) 0 * Os_TE_787078 Os_TE_787050 Chr1 8545548 8545549 + STOWAWAY51_OS 246 0.0003 (1/2980) 0 * * Os_TE_787040 Chr1 8540648 8540649 + TWIF 586 0.0669 (80/1195) -1 * Os_TE_787039 Os_TE_787039 Chr1 8540641 8540640 - ORSiTETNOOT00200 3563 0.0538 (75/1393) 0 * Os_TE_787040 Os_TE_787022 Chr1 8537363 8537362 - F569 228 0.0014 (4/2961) 0 * * Os_TE_786985 Chr1 8523378 8523379 + OSCOPIA2_LTR 5476 0.0007 (2/2993) 0 * Os_TE_786984 Os_TE_786984 Chr1 8523374 8523373 - OSCOPIA2_LTR 5476 0.0007 (2/2997) 0 * Os_TE_786985 Os_TE_786983 Chr1 8522687 8522686 - MuDR3_OS 8604 0.0007 (2/2953) 0 * * Os_TE_786869 Chr1 8482952 8482953 - ORSgTETNOOT02565 240 0.0022 (5/2295) -1 * * Os_TE_786860 Chr1 8480909 8480910 - COPI2_LTR 4733 0.0003 (1/2950) 0 * Os_TE_786859 Os_TE_786859 Chr1 8480905 8480904 + COPI2_LTR 4733 0.0003 (1/2950) 0 * Os_TE_786860 Os_TE_786850 Chr1 8479549 8479548 + TWIFB1 3737 0.0014 (4/2889) 0 * * Os_TE_786774 Chr1 8444412 8444411 - STOWAWAY51_OS 246 0.0054 (16/2990) 0 * Os_TE_786773 Os_TE_786773 Chr1 8444406 8444407 + STOWAWAY51_OS 246 0.0053 (16/2993) 0 * Os_TE_786774 Os_TE_786741 Chr1 8438024 8438025 + AMYLTP 383 0.0838 (249/2970) 0 * Os_TE_786740 Os_TE_786740 Chr1 8438016 8438015 - AMYLTP 383 0.0854 (254/2975) 0 * Os_TE_786741 Os_TE_786737 Chr1 8436902 8436903 + SPMLIKE 10989 0.0003 (1/2932) 0 * * Os_TE_786680 Chr1 8426257 8426258 - ORSgTEMT01701348 105 0.0003 (1/2989) 0 * * Os_TE_786679 Chr1 8425875 8425876 - SC-8_LTR 4951 0.0007 (2/2975) 0 * Os_TE_786678 Os_TE_786678 Chr1 8425871 8425870 + SC-8_LTR 4951 0.0007 (2/2980) 0 * Os_TE_786679 Os_TE_786625 Chr1 8408969 8408970 + STOWAWAY11_OS 292 0.0017 (5/2985) 0 * Os_TE_786624 Os_TE_786624 Chr1 8408968 8408967 - STOWAWAY11_OS 292 0.0017 (5/2985) 0 * Os_TE_786625 Os_TE_786611 Chr1 8400526 8400527 - TRUNCATOR2_LTR 2904 0.1021 (298/2920) 0 * * Os_TE_786603 Chr1 8393471 8393472 - RPO_OS 1983 0.0017 (5/2988) 0 * * Os_TE_786598 Chr1 8391754 8391755 + COPI2_LTR 4733 0.0003 (1/2991) 0 * * Os_TE_786592 Chr1 8387029 8387028 + STOWAWAY51_OS 246 0.0007 (2/2988) 0 * Os_TE_786591 Os_TE_786591 Chr1 8387023 8387024 - STOWAWAY51_OS 246 0.0007 (2/2993) 0 * Os_TE_786592 Os_TE_786582 Chr1 8384197 8384198 - SC-3_LTR 5748 0.0003 (1/2986) 0 * Os_TE_786581 Os_TE_786581 Chr1 8384193 8384192 + ORSiTERTOOT00296 5553 0.0003 (1/2987) 0 * Os_TE_786582 Os_TE_786570 Chr1 8381122 8381123 + ORSgTEMT06100010 269 0.0062 (17/2722) 0 * * Os_TE_786550 Chr1 8376473 8376474 + INDITTO 263 0.0067 (15/2224) 0 * Os_TE_786549 Os_TE_786549 Chr1 8376471 8376470 - INDITTO 263 0.0051 (11/2157) 0 * Os_TE_786550 Os_TE_786525 Chr1 8356660 8356661 - BUHUI 375 0.0013 (4/2991) 0 * Os_TE_786524 Os_TE_786524 Chr1 8356658 8356657 + BUHUI 375 0.0013 (4/2991) 0 * Os_TE_786525 Os_TE_786496 Chr1 8343137 8343136 + SZ-63_LTR 9602 0.0008 (1/1185) 0 * * Os_TE_786474 Chr1 8329557 8329558 + TWIFB1 3737 0.0003 (1/2987) 0 * * Os_TE_786463 Chr1 8326565 8326566 - ORSiTERT00200154 9386 0.0010 (3/2994) 0 * * Os_TE_786446 Chr1 8321483 8321484 - OSTE33 1012 0.0007 (2/2956) 0 * Os_TE_786445 Os_TE_786445 Chr1 8321474 8321473 + OSTE33 1012 0.0007 (2/2952) 0 * Os_TE_786446 Os_TE_786407 Chr1 8314900 8314901 - OSCOPIA1_LTR 4754 0.0017 (5/2962) 0 * Os_TE_786406 Os_TE_786406 Chr1 8314896 8314895 + ORSiTERTOOT00020 2547 0.0017 (5/2961) 0 * Os_TE_786407 Os_TE_786391 Chr1 8311714 8311715 - COPI2_LTR 4733 0.0003 (1/2990) 0 * Os_TE_786390 Os_TE_786390 Chr1 8311710 8311709 + COPI2_LTR 4733 0.0003 (1/2992) 0 * Os_TE_786391 Os_TE_786388 Chr1 8310467 8310466 - MPING 430 0.0017 (5/2966) 0 * * Os_TE_786372 Chr1 8304331 8304332 - SZ-55_LTR 10318 0.0040 (12/2994) 0 * Os_TE_786371 Os_TE_786371 Chr1 8304327 8304326 + SZ-55_LTR 10318 0.0040 (12/2991) 0 * Os_TE_786372 Os_TE_786314 Chr1 8273087 8273088 + CASTAWAY-3 314 0.0013 (4/2992) 0 * Os_TE_786313 Os_TE_786313 Chr1 8273085 8273084 - CASTAWAY-3 314 0.0013 (4/2976) 0 * Os_TE_786314 Os_TE_786286 Chr1 8248620 8248621 - SUSU 279 0.0082 (22/2692) 0 * * Os_TE_786256 Chr1 8231493 8231492 + ORSgTEMT01701663 106 0.1051 (307/2920) 0 * Os_TE_786255 Os_TE_786255 Chr1 8231490 8231491 + ORSgTEMT01701591 154 0.0745 (210/2818) 0 * Os_TE_786256 Os_TE_786251 Chr1 8230837 8230838 - NDNA1TNA_OS 334 0.0027 (8/2989) 0 * Os_TE_786250 Os_TE_786250 Chr1 8230835 8230834 + NDNA1TNA_OS 334 0.0029 (8/2733) 0 * Os_TE_786251 Os_TE_786249 Chr1 8230616 8230615 + F118 179 0.1074 (322/2997) 0 * * Os_TE_786239 Chr1 8227509 8227271 - ORSgTEMT01602413 239 0.8914 (2570/2883) 1 Intact * Os_TE_786233 Chr1 8226367 8226368 + ORSiTERTOOT00034 791 0.0007 (2/2893) 0 * * Os_TE_786225 Chr1 8223154 8223153 - ORSgTEMT01701591 154 0.0033 (9/2703) 0 * Os_TE_786224 Os_TE_786224 Chr1 8223151 8223152 - ORSgTEMT01700468 154 0.1067 (319/2990) 0 * Os_TE_786225 Os_TE_786212 Chr1 8219280 8219279 + ORSgTEMT00901405 217 0.1073 (321/2991) 0 * Os_TE_786211 Os_TE_786211 Chr1 8219276 8219277 + ORSgTEMT00901844 250 0.1058 (317/2995) 0 * Os_TE_786212 Os_TE_786210 Chr1 8219009 8219008 - ORSgTEMT01700029 143 0.0017 (5/2990) 0 * Os_TE_786209 Os_TE_786209 Chr1 8219008 8219009 - STOWAWAY1_OS 149 0.0020 (6/2997) 0 * Os_TE_786210 Os_TE_786207 Chr1 8218764 8218763 + ORSgTEMT01701224 156 0.1065 (317/2977) 0 * * Os_TE_786197 Chr1 8214949 8214948 + ORSgTEMT00901844 250 0.0017 (5/2963) 0 * * Os_TE_786173 Chr1 8208508 8208509 - COPIA2-LTR_OS 6433 0.0017 (5/2975) 0 * Os_TE_786172 Os_TE_786172 Chr1 8208504 8208503 + COPIA2-LTR_OS 6433 0.0020 (6/2987) 0 * Os_TE_786173 Os_TE_786169 Chr1 8208236 8208237 + RETROSAT4_LTR 13504 0.0061 (18/2960) 0 * Os_TE_786168 Os_TE_786168 Chr1 8208232 8208231 - RETROSAT4_LTR 13504 0.0061 (18/2962) 0 * Os_TE_786169 Os_TE_786157 Chr1 8205674 8205340 + NDNA1TNA_OS 334 0.8997 (2664/2961) 1 Intact Os_TE_786156 Os_TE_786156 Chr1 8205337 8205671 + ORSgTEMT00101674 340 0.8945 (2655/2968) 1 Intact Os_TE_786157 Os_TE_786154 Chr1 8202973 8202972 - ORSgTEMT01701858 154 0.0080 (24/2999) 0 * Os_TE_786153 Os_TE_786153 Chr1 8202970 8202971 - ORSgTEMT01701206 142 0.0080 (24/2999) 0 * Os_TE_786154 Os_TE_786142 Chr1 8199181 8199182 - COPIA2-LTR_OS 6433 0.0003 (1/2917) 0 * Os_TE_786141 Os_TE_786141 Chr1 8199177 8199176 + COPIA2-LTR_OS 6433 0.0003 (1/2926) 0 * Os_TE_786142 Os_TE_786084 Chr1 8178096 8178095 + ORSgTEMT00500081 146 0.8989 (2649/2947) 0.88 * * Os_TE_786040 Chr1 8150251 8150252 - ORSgTEMT01601493 303 0.0200 (60/2996) 0 * * Os_TE_786011 Chr1 8139389 8138623 + MDR2 6967 0.8973 (2621/2921) 1 Intact * Os_TE_786008 Chr1 8138495 8138496 + COPIA2-LTR_OS 6433 0.0003 (1/2958) 0 * Os_TE_786007 Os_TE_786007 Chr1 8138491 8138490 - COPIA2-LTR_OS 6433 0.0003 (1/2954) 0 * Os_TE_786008 Os_TE_785965 Chr1 8113888 8113889 + INDITTO 263 0.0255 (76/2981) 0 * * Os_TE_785963 Chr1 8113685 8113686 - INDITTO 263 0.0240 (71/2962) 0 * Os_TE_785962 Os_TE_785962 Chr1 8113683 8113682 + INDITTO 263 0.0247 (73/2961) 0 * Os_TE_785963 Os_TE_785950 Chr1 8110159 8110160 - TNR2A 152 0.0003 (1/2974) 0 * * Os_TE_785882 Chr1 8087293 8087294 - MPING 430 0.0004 (1/2829) 0 * Os_TE_785881 Os_TE_785881 Chr1 8087291 8087290 + MPING 430 0.0003 (1/2867) 0 * Os_TE_785882 Os_TE_785877 Chr1 8084099 8084100 - MPING 430 0.0003 (1/2983) 0 * Os_TE_785876 Os_TE_785876 Chr1 8084097 8084096 + MPING 430 0.0003 (1/2980) 0 * Os_TE_785877 Os_TE_785874 Chr1 8082418 8082419 + COPIA2-LTR_OS 6433 0.0003 (1/2986) 0 * Os_TE_785873 Os_TE_785873 Chr1 8082414 8082413 - COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * Os_TE_785874 Os_TE_785836 Chr1 8073414 8073415 - INDITTO 263 0.0197 (59/2993) 0 * Os_TE_785835 Os_TE_785835 Chr1 8073412 8073411 + INDITTO 263 0.0201 (60/2988) 0 * Os_TE_785836 Os_TE_785818 Chr1 8061818 8061819 - COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * * Os_TE_785813 Chr1 8052162 8052161 + ORSgTEMT00501455 153 0.0003 (1/2981) 0 * * Os_TE_785742 Chr1 8019254 8019255 + COPIA2-LTR_OS 6433 0.0003 (1/2956) 0 * Os_TE_785741 Os_TE_785741 Chr1 8019250 8019249 - COPIA2-LTR_OS 6433 0.0003 (1/2974) 0 * Os_TE_785742 Os_TE_785715 Chr1 8004385 8004386 - SZ-57_LTR 3700 0.0017 (5/2998) 0 * * Os_TE_785712 Chr1 8000922 8000921 - SZ-40LTR 2465 0.0003 (1/2997) 0 * * Os_TE_785662 Chr1 7981785 7981784 - COPI2_LTR 4733 0.0003 (1/2998) 0 * * Os_TE_785633 Chr1 7972652 7972653 - COPI2_LTR 4733 0.0007 (2/2981) 0 * Os_TE_785632 Os_TE_785632 Chr1 7972648 7972647 + COPI2_LTR 4733 0.0007 (2/2980) 0 * Os_TE_785633 Os_TE_785631 Chr1 7971977 7971978 - COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * Os_TE_785630 Os_TE_785630 Chr1 7971973 7971972 + COPIA2-LTR_OS 6433 0.0003 (1/2985) 0 * Os_TE_785631 Os_TE_785623 Chr1 7966598 7966597 - MuDR3_OS 8604 0.0003 (1/2984) 0 * * Os_TE_785619 Chr1 7965381 7965382 + MPING 430 0.0003 (1/2995) 0 * * Os_TE_785601 Chr1 7947012 7947013 - INDITTO 263 0.1039 (302/2906) 0 * Os_TE_785600 Os_TE_785600 Chr1 7947010 7947009 - INDITTO 263 0.0966 (280/2898) 0 * Os_TE_785601 Os_TE_785596 Chr1 7945183 7945184 - COPI2_LTR 4733 0.0010 (3/2996) 0 * Os_TE_785595 Os_TE_785595 Chr1 7945179 7945178 + COPI2_LTR 4733 0.0010 (3/2997) 0 * Os_TE_785596 Os_TE_785593 Chr1 7943788 7943787 + COPIA2-LTR_OS 6433 0.0003 (1/2884) 0 * * Os_TE_785553 Chr1 7923283 7923282 - ORSiTERTOOT00074 4935 0.0003 (1/2954) 0 * * Os_TE_785551 Chr1 7923233 7923232 + ORSgTEMT01602181 239 0.0077 (23/2970) 0 * Os_TE_785550 Os_TE_785550 Chr1 7923230 7923231 - ORSgTEMT01601432 239 0.0071 (21/2976) 0 * Os_TE_785551 Os_TE_785489 Chr1 7902992 7902575 + ORSgTEMT00300069 394 0.8973 (2656/2960) 1 Intact Os_TE_785487 Os_TE_785487 Chr1 7902568 7902985 + ORSgTEMT00300064 397 0.8946 (2674/2989) 1 Intact Os_TE_785489 Os_TE_785478 Chr1 7896591 7896853 + F770 284 0.4176 (1246/2984) 1 Intact * Os_TE_785460 Chr1 7883015 7883016 - NDNA1TNA_OS 334 0.3043 (680/2235) 0 * * Os_TE_785459 Chr1 7882911 7882912 - ORSgTEMT02400179 221 0.1058 (315/2977) 0 * * Os_TE_785458 Chr1 7882769 7882768 + ORSiTERTOOT00226 792 0.0003 (1/2988) 0 * * Os_TE_785411 Chr1 7868242 7867974 - ORSgTEMT06100010 269 0.4175 (1239/2968) 1 Intact Os_TE_785408 Os_TE_785408 Chr1 7867974 7868242 + ORSgTEMT06100010 269 0.4173 (1239/2969) 1 Intact Os_TE_785411 Os_TE_785379 Chr1 7850528 7850529 - INDITTO 263 0.0027 (8/2995) 0 * Os_TE_785378 Os_TE_785378 Chr1 7850526 7850525 + INDITTO 263 0.0027 (8/2996) 0 * Os_TE_785379 Os_TE_785363 Chr1 7843672 7843673 - RIREX_LTR 8828 0.0003 (1/2998) 0 * Os_TE_785362 Os_TE_785362 Chr1 7843668 7843667 + RIREX_LTR 8828 0.0003 (1/2996) 0 * Os_TE_785363 Os_TE_785321 Chr1 7823317 7823318 + SZ-40LTR 2465 0.0003 (1/2997) 0 * * Os_TE_785278 Chr1 7803493 7803492 - ORSiTERTOOT00332 5395 0.0003 (1/2990) 0 * * Os_TE_785261 Chr1 7800282 7800283 + COPIA2-LTR_OS 6433 0.2198 (653/2971) 0 * * Os_TE_785259 Chr1 7800081 7800082 - INDITTO 263 0.0952 (281/2951) 0 * Os_TE_785258 Os_TE_785258 Chr1 7800079 7800078 + INDITTO 263 0.0973 (285/2929) 0 * Os_TE_785259 Os_TE_785252 Chr1 7793820 7793819 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * * Os_TE_785250 Chr1 7793402 7793403 + RIRE3_LTR 12054 0.2161 (645/2985) 0 * Os_TE_785249 Os_TE_785249 Chr1 7793398 7793397 - RIRE3_LTR 12054 0.2214 (664/2999) 0 * Os_TE_785250 Os_TE_785248 Chr1 7792367 7791159 - SZLTR 1249 0.3458 (1034/2990) 1 Intact Os_TE_785239 Os_TE_785239 Chr1 7781172 7792367 + RETRO2_LTR 12874 0.3434 (1025/2985) 1 Intact Os_TE_785248 Os_TE_785235 Chr1 7779209 7779210 - TNR2A 152 0.5620 (1669/2970) 0 * * Os_TE_785193 Chr1 7760294 7760295 - COPI2_LTR 4733 0.0007 (2/2998) 0 * Os_TE_785192 Os_TE_785192 Chr1 7760290 7760289 + COPI2_LTR 4733 0.0007 (2/2996) 0 * Os_TE_785193 Os_TE_785178 Chr1 7758895 7758894 - STOWAWAY51_OS 246 0.0010 (3/2985) 0 * Os_TE_785177 Os_TE_785177 Chr1 7758889 7758890 + STOWAWAY51_OS 246 0.0010 (3/2990) 0 * Os_TE_785178 Os_TE_785143 Chr1 7737281 7737280 - MERMITEB 1610 0.0003 (1/2938) 0 * * Os_TE_785136 Chr1 7735562 7735561 + ORSgTEMT01601591 242 0.0003 (1/2975) 0 * Os_TE_785135 Os_TE_785135 Chr1 7735559 7735560 - STOWAWAY51_OS 246 0.0003 (1/2987) 0 * Os_TE_785136 Os_TE_785131 Chr1 7734765 7734766 + MPING 430 0.0020 (6/2994) 0 * Os_TE_785130 Os_TE_785130 Chr1 7734763 7734762 - MPING 430 0.0023 (7/2995) 0 * Os_TE_785131 Os_TE_785129 Chr1 7734310 7734311 + MPING 430 0.0010 (3/2993) 0 * Os_TE_785128 Os_TE_785128 Chr1 7734308 7734307 - MPING 430 0.0010 (3/2996) 0 * Os_TE_785129 Os_TE_785097 Chr1 7727357 7727358 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_785096 Os_TE_785096 Chr1 7727353 7727352 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_785097 Os_TE_785093 Chr1 7727099 7727100 - INDITTO 263 0.5727 (1709/2984) 0 * Os_TE_785092 Os_TE_785092 Chr1 7727088 7727087 - ORSgTETNOOT02044 254 0.5694 (1691/2970) 0 * Os_TE_785093 Os_TE_785072 Chr1 7720053 7720052 - ORSgTEMT00900760 239 0.0017 (5/2894) 0 * * Os_TE_785054 Chr1 7706605 7706606 + AMYLTP 383 0.5688 (1695/2980) 0 * Os_TE_785053 Os_TE_785053 Chr1 7706597 7706596 - AMYLTP 383 0.5554 (1619/2915) 0 * Os_TE_785054 Os_TE_785051 Chr1 7704467 7704468 + COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_785050 Os_TE_785050 Chr1 7704463 7704462 - COPIA2-LTR_OS 6433 0.0003 (1/2990) 0 * Os_TE_785051 Os_TE_785049 Chr1 7704251 7704252 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_785048 Os_TE_785048 Chr1 7704247 7704246 + COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_785049 Os_TE_785047 Chr1 7703980 7703979 - STOWAWAY51_OS 246 0.0007 (2/2945) 0 * * Os_TE_785046 Chr1 7703918 7703062 - ORSiTERT00100080 6173 0.3446 (999/2899) 1 Intact Os_TE_785045 Os_TE_785045 Chr1 7703062 7703918 + ORSiTERT00100080 6173 0.3367 (976/2899) 1 Intact Os_TE_785046 Os_TE_785017 Chr1 7691604 7691605 + ORSgTEMT01700610 148 0.0017 (5/2994) 0 * Os_TE_785016 Os_TE_785016 Chr1 7691601 7691600 + ORSgTEMT01701224 156 0.0017 (5/2991) 0 * Os_TE_785017 Os_TE_785015 Chr1 7691598 7691599 + ORSgTEMT01700789 143 0.0017 (5/2993) 0 * * Os_TE_785011 Chr1 7689514 7689513 + ORSgTEMT01601591 242 0.4465 (1240/2777) 0 * * Os_TE_784985 Chr1 7669303 7669304 - GYPSY-A_LTR 8951 0.0003 (1/2998) 0 * Os_TE_784984 Os_TE_784984 Chr1 7669299 7669298 + SZ-40LTR 2465 0.0003 (1/2999) 0 * Os_TE_784985 Os_TE_784963 Chr1 7656569 7656568 + TWIFB1 3737 0.5442 (1527/2806) 0 * * Os_TE_784919 Chr1 7631546 7631547 - ENSPM4_OS 11610 0.5696 (1695/2976) 0 * * Os_TE_784908 Chr1 7628883 7628884 + RETROSAT2LTRA 3112 0.5609 (1649/2940) 0 * * Os_TE_784867 Chr1 7614927 7614697 + ORSgTETNOOT01219 231 0.3109 (929/2988) 1 Intact Os_TE_784866 Os_TE_784866 Chr1 7614693 7614927 + ORSgTETNOOT00908 242 0.3091 (924/2989) 1 Intact Os_TE_784867 Os_TE_784805 Chr1 7607326 7607327 - COPIA2-LTR_OS 6433 0.0034 (10/2970) 0 * * Os_TE_784798 Chr1 7605905 7605906 + NDNA1TNA_OS 334 0.0098 (29/2970) 0 * Os_TE_784797 Os_TE_784797 Chr1 7605903 7605902 - NDNA1TNA_OS 334 0.0098 (29/2973) 0 * Os_TE_784798 Os_TE_784793 Chr1 7605482 7605483 - COPI2_LTR 4733 0.0007 (2/2888) 0 * Os_TE_784792 Os_TE_784792 Chr1 7605478 7605477 + COPI2_LTR 4733 0.0003 (1/2884) 0 * Os_TE_784793 Os_TE_784735 Chr1 7582634 7582635 - GYPSO_LTR 9828 0.0012 (1/836) -1 * * Os_TE_784708 Chr1 7564347 7564348 + INDITTO 263 0.0300 (90/2997) 0 * Os_TE_784707 Os_TE_784707 Chr1 7564345 7564344 - INDITTO 263 0.0300 (90/2998) 0 * Os_TE_784708 Os_TE_784706 Chr1 7563993 7563994 - SZ-22_LTR 4403 0.0003 (1/2994) 0 * Os_TE_784705 Os_TE_784705 Chr1 7563989 7563988 + ORSiTERTOOT00226 792 0.0003 (1/2995) 0 * Os_TE_784706 Os_TE_784700 Chr1 7563168 7563169 + COPI2_LTR 4733 0.0010 (3/2916) 0 * Os_TE_784699 Os_TE_784699 Chr1 7563164 7563163 - COPI2_LTR 4733 0.0010 (3/2925) 0 * Os_TE_784700 Os_TE_784691 Chr1 7560928 7560927 - ORSgTEMT00400006 152 0.0003 (1/2958) 0 * * Os_TE_784652 Chr1 7538214 7538215 - ORSgTETN00200001 10994 0.0007 (2/2970) 0 * Os_TE_784651 Os_TE_784651 Chr1 7538212 7538211 + SPMLIKE 10989 0.0007 (2/2972) 0 * Os_TE_784652 Os_TE_784629 Chr1 7533104 7533103 + ORSgTEMT00700017 386 0.0003 (1/2970) 0 * * Os_TE_784623 Chr1 7529438 7529437 + NDNA1TNA_OS 334 0.0007 (2/2998) 0 * * Os_TE_784622 Chr1 7529335 7529334 + OSTONOR1_LTR 6440 0.0003 (1/2993) 0 * * Os_TE_784615 Chr1 7524989 7524990 + OSMU5 4881 0.1251 (372/2974) 0 * * Os_TE_784612 Chr1 7519059 7519060 - RIREX_LTR 8828 0.0003 (1/2950) 0 * Os_TE_784611 Os_TE_784611 Chr1 7519055 7519054 + RIREX_LTR 8828 0.0003 (1/2956) 0 * Os_TE_784612 Os_TE_784564 Chr1 7504056 7504057 + SZ-62LTR 3649 0.5894 (1678/2847) 0 * * Os_TE_784551 Chr1 7501003 7501004 - RETRO2_LTR 12874 0.5708 (1710/2996) 0 * Os_TE_784550 Os_TE_784550 Chr1 7500999 7500998 + RETRO2_LTR 12874 0.5613 (1658/2954) 0 * Os_TE_784551 Os_TE_784549 Chr1 7499803 7499802 + MUDRN5_OS 374 0.0003 (1/2982) 0 * * Os_TE_784538 Chr1 7494339 7494340 + ORSgTEMT05200196 285 0.0021 (6/2888) 0 * * Os_TE_784530 Chr1 7492942 7492943 + COPI2_LTR 4733 0.0003 (1/2988) 0 * Os_TE_784529 Os_TE_784529 Chr1 7492938 7492937 - COPI2_LTR 4733 0.0007 (2/2987) 0 * Os_TE_784530 Os_TE_784525 Chr1 7491678 7491679 - COPIA2-LTR_OS 6433 0.0003 (1/2910) 0 * Os_TE_784524 Os_TE_784524 Chr1 7491674 7491673 + COPIA2-LTR_OS 6433 0.0003 (1/2916) 0 * Os_TE_784525 Os_TE_784470 Chr1 7458555 7458554 - AMYLTP 383 0.0071 (4/565) -1 * * Os_TE_784465 Chr1 7455500 7455499 + RIREX_LTR 8828 0.0017 (5/2997) 0 * * Os_TE_784439 Chr1 7443259 7443260 + ORSgTEMT06100010 269 0.5746 (1709/2974) 0 * Os_TE_784438 Os_TE_784438 Chr1 7443257 7443256 - ORSgTEMT06100010 269 0.5736 (1699/2962) 0 * Os_TE_784439 Os_TE_784430 Chr1 7437316 7437317 + ORSgTEMT06100010 269 0.0007 (2/2945) 0 * Os_TE_784429 Os_TE_784429 Chr1 7437315 7437314 - ORSgTEMT06100010 269 0.0003 (1/2955) 0 * Os_TE_784430 Os_TE_784414 Chr1 7432364 7432363 - COPI2_LTR 4733 0.0004 (1/2799) 0 * * Os_TE_784404 Chr1 7428308 7428309 + RIREX_LTR 8828 0.0010 (3/2984) 0 * Os_TE_784403 Os_TE_784403 Chr1 7428304 7428303 - RIREX_LTR 8828 0.0010 (3/2978) 0 * Os_TE_784404 Os_TE_784399 Chr1 7427783 7427782 + ORSgTEMT02400034 225 0.5878 (1727/2938) 0 * Os_TE_784398 Os_TE_784398 Chr1 7427778 7427779 - ORSgTEMT02400148 214 0.5748 (1660/2888) 0 * Os_TE_784399 Os_TE_784385 Chr1 7425460 7425461 + MERMITE18A 532 0.0017 (5/2991) 0 * * Os_TE_784362 Chr1 7417283 7417284 - ORSgTEMT02400246 177 0.0020 (6/2966) 0 * * Os_TE_784302 Chr1 7398490 7398491 + RETRO2_LTR 12874 0.0013 (4/2979) 0 * Os_TE_784301 Os_TE_784301 Chr1 7398486 7398485 - RETRO2_LTR 12874 0.0013 (4/2969) 0 * Os_TE_784302 Os_TE_784299 Chr1 7397819 7397818 + RETROSAT2LTRA 3112 0.0023 (7/2985) 0 * * Os_TE_784297 Chr1 7397280 7397279 + ORSiTERTOOT00034 791 0.0010 (3/2992) 0 * * Os_TE_784283 Chr1 7395730 7395731 - SZ-22_LTR 4403 0.0003 (1/2980) 0 * * Os_TE_784280 Chr1 7395635 7395634 + ORSiTERTOOT00097 759 0.0003 (1/2979) 0 * * Os_TE_784279 Chr1 7395603 7395602 + ORSiTERTOOT00226 792 0.0003 (1/2968) 0 * * Os_TE_784275 Chr1 7395178 7395177 + TWIFB1 3737 0.0015 (4/2750) 0 * * Os_TE_784274 Chr1 7394542 7394543 + ORSiTERTOOT00226 792 0.0011 (3/2784) 0 * * Os_TE_784272 Chr1 7394244 7393898 + NDNA2TNA_OS 346 0.2942 (875/2974) 1 Intact * Os_TE_784230 Chr1 7375345 7375344 + ORSiTERTOOT00296 5553 0.0023 (3/1330) 0 * * Os_TE_784200 Chr1 7343845 7343846 + MUDRN3_OS 903 0.1342 (401/2989) 0 * * Os_TE_784194 Chr1 7336693 7336694 - ORSgTEMT04200023 393 0.1385 (411/2967) 0 * * Os_TE_784192 Chr1 7335387 7335388 - TELIA 141 0.0003 (1/2978) 0 * Os_TE_784191 Os_TE_784191 Chr1 7335379 7335378 + TELIA 141 0.0003 (1/2975) 0 * Os_TE_784192 Os_TE_784180 Chr1 7332744 7332745 - ORSgTEMT00500520 147 0.1359 (405/2981) 0 * * Os_TE_784173 Chr1 7323065 7323066 + ORSiTERTOOT00226 792 0.0003 (1/2970) 0 * Os_TE_784172 Os_TE_784172 Chr1 7323061 7323060 - SZ-22_LTR 4403 0.0003 (1/2967) 0 * Os_TE_784173 Os_TE_784158 Chr1 7320370 7320369 + ORSgTEMT01601122 212 0.0027 (8/2974) 0 * Os_TE_784157 Os_TE_784157 Chr1 7320369 7320370 + STOWAWAY21_OS 243 0.0024 (7/2947) 0 * Os_TE_784158 Os_TE_784152 Chr1 7317288 7317289 + ENSPM3_OS 10837 0.0017 (5/2968) 0 * * Os_TE_784129 Chr1 7307042 7307041 - MPING 430 0.0055 (16/2902) 0 * * Os_TE_784128 Chr1 7307028 7306790 - ORSgTEMT01601432 239 0.7198 (2073/2880) 1 Intact * Os_TE_784114 Chr1 7302496 7302497 - COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * * Os_TE_784103 Chr1 7295931 7295930 + ORSgTEMT01701265 147 0.0017 (5/2920) 0 * * Os_TE_784085 Chr1 7290575 7290576 - SZ-62LTR 3649 0.0027 (8/2990) 0 * * Os_TE_784062 Chr1 7281301 7281300 + NDNA1TNA_OS 334 0.0010 (3/2965) 0 * * Os_TE_784038 Chr1 7273504 7273503 - ORSgTEMT00100811 332 0.0017 (5/2967) 0 * * Os_TE_784036 Chr1 7273170 7273169 + ORSgTETNOOT00831 185 0.0003 (1/2992) 0 * * Os_TE_784030 Chr1 7266194 7266195 - SC-3_LTR 5748 0.0037 (11/2995) 0 * Os_TE_784029 Os_TE_784029 Chr1 7266190 7266189 + ORSiTERTOOT00296 5553 0.0037 (11/2995) 0 * Os_TE_784030 Os_TE_784007 Chr1 7261618 7261619 - ORSgTEMT02000047 197 0.4168 (1235/2963) 0 * * Os_TE_783994 Chr1 7258792 7258793 - INDITTO 263 0.0035 (9/2577) 0 * Os_TE_783993 Os_TE_783993 Chr1 7258790 7258789 - ORSgTETNOOT02417 265 0.0033 (10/2996) 0 * Os_TE_783994 Os_TE_783992 Chr1 7258714 7258715 + INDITTO 263 0.1269 (380/2995) 0 * Os_TE_783991 Os_TE_783991 Chr1 7258712 7258711 - INDITTO 263 0.1264 (379/2998) 0 * Os_TE_783992 Os_TE_783985 Chr1 7257845 7257577 - ORSgTEMT06100010 269 0.2848 (852/2992) 1 Intact Os_TE_783982 Os_TE_783982 Chr1 7257577 7257845 + ORSgTEMT06100010 269 0.2830 (846/2989) 1 Intact Os_TE_783985 Os_TE_783976 Chr1 7254339 7254340 + ORSiTERTOOT00296 5553 0.0007 (2/2993) 0 * Os_TE_783975 Os_TE_783975 Chr1 7254335 7254334 - SC-3_LTR 5748 0.0007 (2/2993) 0 * Os_TE_783976 Os_TE_783966 Chr1 7248115 7248116 + ORSgTEMT00101510 151 0.0003 (1/2942) 0 * * Os_TE_783963 Chr1 7246786 7246787 - ORSgTEMT00600085 364 0.0007 (2/2966) 0 * * Os_TE_783951 Chr1 7243157 7243158 + ORSgTETNOOT00908 242 0.0023 (7/2984) 0 * * Os_TE_783943 Chr1 7241843 7241844 + MPING 430 0.0007 (2/2978) 0 * Os_TE_783942 Os_TE_783942 Chr1 7241841 7241840 - MPING 430 0.0007 (2/2990) 0 * Os_TE_783943 Os_TE_783918 Chr1 7237625 7237431 + ORSgTEMT02400041 225 0.8532 (2552/2991) 1 Intact Os_TE_783917 Os_TE_783917 Chr1 7237429 7237618 - ORSgTEMT02400246 177 0.8513 (2519/2959) 1 Intact Os_TE_783918 Os_TE_783890 Chr1 7228042 7228043 + ORSgTEMT01601367 239 0.0003 (1/2977) 0 * * Os_TE_783886 Chr1 7227521 7227520 + COPI2_LTR 4733 0.0010 (3/2956) 0 * * Os_TE_783827 Chr1 7206860 7206859 - TRUNCATOR 2918 0.4804 (1363/2837) 0 * * Os_TE_783812 Chr1 7193482 7193483 - ORSgTEMT02400179 221 0.0004 (1/2782) 0 * * Os_TE_783761 Chr1 7177240 7177241 + ORSiTERTOOT00332 5395 0.0007 (2/2979) 0 * Os_TE_783760 Os_TE_783760 Chr1 7177236 7177235 - ORSiTERTOOT00332 5395 0.0007 (2/2974) 0 * Os_TE_783761 Os_TE_783744 Chr1 7167449 7167448 - STOWAWAY51_OS 246 0.0007 (2/2996) 0 * Os_TE_783743 Os_TE_783743 Chr1 7167448 7167449 + TNR11 811 0.0007 (2/2997) 0 * Os_TE_783744 Os_TE_783726 Chr1 7152700 7152701 + RIREX_LTR 8828 0.0003 (1/2905) 0 * Os_TE_783725 Os_TE_783725 Chr1 7152696 7152695 - RIREX_LTR 8828 0.0003 (1/2894) 0 * Os_TE_783726 Os_TE_783720 Chr1 7151748 7151747 + RIREX_LTR 8828 0.0003 (1/2984) 0 * * Os_TE_783716 Chr1 7148904 7148905 - AMYLTP 383 0.0008 (2/2640) 0 * * Os_TE_783713 Chr1 7147894 7147895 + EnSpm-13_OS 11171 0.0003 (1/2916) 0 * * Os_TE_783654 Chr1 7137489 7137488 + STOWAWAY51_OS 246 0.0003 (1/2989) 0 * Os_TE_783653 Os_TE_783653 Chr1 7137483 7137484 - STOWAWAY51_OS 246 0.0003 (1/2983) 0 * Os_TE_783654 Os_TE_783641 Chr1 7125111 7124425 + DS-RICE4N 715 0.6401 (1898/2965) 1 Intact Os_TE_783637 Os_TE_783637 Chr1 7124419 7125102 - ORSiTETN00100011 676 0.6369 (1889/2966) 1 Intact Os_TE_783641 Os_TE_783617 Chr1 7112905 7112724 + EXPLORER 210 0.6531 (1568/2401) 1 Intact * Os_TE_783615 Chr1 7112414 7112288 - ORSgTEMT00502359 149 0.6394 (1738/2718) 1 Intact * Os_TE_783611 Chr1 7111562 7111561 + ORSgTEMT00501279 126 0.5104 (1522/2982) 0 * * Os_TE_783604 Chr1 7110377 7110376 - INDITTO 263 0.0134 (39/2901) 0 * * Os_TE_783603 Chr1 7110367 7110366 + ORSgTEMT00101674 340 0.2864 (826/2884) 0 * Os_TE_783602 Os_TE_783602 Chr1 7110366 7110367 + NDNA1TNA_OS 334 0.2805 (818/2916) 0 * Os_TE_783603 Os_TE_783601 Chr1 7110273 7110047 - STOWAWAY51_OS 246 0.6489 (1876/2891) 1 Intact Os_TE_783598 Os_TE_783598 Chr1 7110044 7110273 + STOWAWAY51_OS 246 0.6820 (1868/2739) 1 Intact Os_TE_783601 Os_TE_783587 Chr1 7104438 7104437 + STOWAWAY51_OS 246 0.0003 (1/2941) 0 * Os_TE_783586 Os_TE_783586 Chr1 7104432 7104433 - STOWAWAY51_OS 246 0.0003 (1/2948) 0 * Os_TE_783587 Os_TE_783580 Chr1 7103502 7103501 + TRUNCATOR 2918 0.0060 (18/2978) 0 * * Os_TE_783571 Chr1 7102463 7102462 + OLO24C 356 0.0017 (5/2992) 0 * Os_TE_783570 Os_TE_783570 Chr1 7102460 7102461 + ORSgTEMT00100886 348 0.0017 (5/2989) 0 * Os_TE_783571 Os_TE_783569 Chr1 7101919 7101920 - SC-3_LTR 5748 0.0080 (24/2996) 0 * Os_TE_783568 Os_TE_783568 Chr1 7101915 7101914 + ORSiTERTOOT00296 5553 0.0080 (24/2994) 0 * Os_TE_783569 Os_TE_783565 Chr1 7096556 7096557 + MPING 430 0.0005 (1/1912) 0 * * Os_TE_783553 Chr1 7091472 7091473 - ORSgTETNOOT01534 208 0.0018 (5/2838) 0 * * Os_TE_783544 Chr1 7082578 7082579 + RIRE2_LTR 11306 0.0010 (3/2954) 0 * Os_TE_783543 Os_TE_783543 Chr1 7082574 7082573 - RIRE2_LTR 11306 0.0010 (3/2933) 0 * Os_TE_783544 Os_TE_783535 Chr1 7079856 7079855 + NDNA1TNA_OS 334 0.0004 (1/2753) 0 * * Os_TE_783532 Chr1 7079481 7079731 - INDITTO 263 0.1966 (587/2985) 1 Intact * Os_TE_783522 Chr1 7072490 7072489 - COPIA2-LTR_OS 6433 0.0013 (4/2986) 0 * * Os_TE_783505 Chr1 7068041 7068040 - RIREX_LTR 8828 0.0004 (1/2791) 0 * * Os_TE_783499 Chr1 7062383 7062382 - COPI2_LTR 4733 0.0007 (2/2982) 0 * * Os_TE_783473 Chr1 7054806 7054807 + ORSgTETNOOT00032 218 0.0003 (1/2988) 0 * * Os_TE_783459 Chr1 7050810 7050811 + SC-1_LTR 6888 0.3622 (1083/2990) 0 * * Os_TE_783446 Chr1 7045169 7045170 - SC-8_LTR 4951 0.0013 (4/2991) 0 * Os_TE_783445 Os_TE_783445 Chr1 7045165 7045164 + SC-8_LTR 4951 0.0013 (4/2993) 0 * Os_TE_783446 Os_TE_783441 Chr1 7043101 7043100 - STOWAWAY51_OS 246 0.0034 (10/2984) 0 * Os_TE_783440 Os_TE_783440 Chr1 7043095 7043096 + STOWAWAY51_OS 246 0.0033 (10/2987) 0 * Os_TE_783441 Os_TE_783436 Chr1 7037209 7037210 + TWIF 586 0.0003 (1/2941) 0 * * Os_TE_783422 Chr1 7032237 7032238 + COPIA2-LTR_OS 6433 0.0007 (2/2978) 0 * Os_TE_783421 Os_TE_783421 Chr1 7032233 7032232 - COPIA2-LTR_OS 6433 0.0007 (2/2980) 0 * Os_TE_783422 Os_TE_783419 Chr1 7031737 7031738 - ORSgTETN00200001 10994 0.0265 (79/2977) 0 * Os_TE_783418 Os_TE_783418 Chr1 7031735 7031734 + SPMLIKE 10989 0.0265 (79/2985) 0 * Os_TE_783419 Os_TE_783414 Chr1 7030679 7030680 - SC-8_LTR 4951 0.0003 (1/2991) 0 * Os_TE_783413 Os_TE_783413 Chr1 7030675 7030674 + SC-8_LTR 4951 0.0003 (1/2993) 0 * Os_TE_783414 Os_TE_783404 Chr1 7023426 7023427 + STOWAWAY51_OS 246 0.0003 (1/2993) 0 * * Os_TE_783403 Chr1 7023107 7023108 + ORSgTEMT01600726 235 0.0120 (36/2999) 0 * Os_TE_783402 Os_TE_783402 Chr1 7023101 7023100 - STOWAWAY51_OS 246 0.0113 (34/2999) 0 * Os_TE_783403 Os_TE_783401 Chr1 7023095 7023096 + STOWAWAY51_OS 246 0.0120 (36/2998) 0 * * Os_TE_783383 Chr1 7015922 7015923 - RIREX_LTR 8828 0.2877 (848/2948) 0 * * Os_TE_783374 Chr1 7015327 7015328 - OSTE33 1012 0.6589 (1957/2970) 0 * * Os_TE_783356 Chr1 7012776 7012777 - COPI2_LTR 4733 0.0003 (1/2993) 0 * Os_TE_783355 Os_TE_783355 Chr1 7012772 7012771 + COPI2_LTR 4733 0.0003 (1/2992) 0 * Os_TE_783356 Os_TE_783318 Chr1 7002098 7002099 + DS-RICE2N 613 0.1377 (397/2884) 0 * * Os_TE_783315 Chr1 7001641 7001642 - OSTE17 734 0.0007 (2/2977) 0 * Os_TE_783314 Os_TE_783314 Chr1 7001633 7001632 - OSTE17 734 0.0007 (2/2976) 0 * Os_TE_783315 Os_TE_783310 Chr1 7000097 7000096 - STOWAWAY51_OS 246 0.0003 (1/2986) 0 * * Os_TE_783303 Chr1 6998850 6998849 + MPING 430 0.0004 (1/2264) -1 * * Os_TE_783302 Chr1 6998705 6998706 + MPING 430 0.0004 (1/2602) -1 * * Os_TE_783289 Chr1 6996195 6996196 + AMYLTP 383 0.0017 (5/2995) 0 * Os_TE_783288 Os_TE_783288 Chr1 6996187 6996186 - AMYLTP 383 0.0017 (5/2995) 0 * Os_TE_783289 Os_TE_783248 Chr1 6982225 6982224 - SC-8_LTR 4951 0.0003 (1/2996) 0 * * Os_TE_783244 Chr1 6981549 6981550 - SC-3_LTR 5748 0.0003 (1/2973) 0 * Os_TE_783243 Os_TE_783243 Chr1 6981545 6981544 + ORSiTERTOOT00296 5553 0.0003 (1/2973) 0 * Os_TE_783244 Os_TE_783233 Chr1 6978550 6978811 - ORSgTETNOOT02208 262 0.2105 (628/2984) 1 Intact * Os_TE_783214 Chr1 6972748 6972749 + MPING 430 0.0003 (1/2990) 0 * Os_TE_783213 Os_TE_783213 Chr1 6972746 6972745 - MPING 430 0.0003 (1/2988) 0 * Os_TE_783214 Os_TE_783207 Chr1 6968357 6968356 + SZ-55_LTR 10318 0.0003 (1/2997) 0 * * Os_TE_783204 Chr1 6967041 6967042 - RETRO2_LTR 12874 0.0946 (266/2813) 0 * Os_TE_783203 Os_TE_783203 Chr1 6967037 6967036 + RETRO2_LTR 12874 0.0867 (240/2769) 0 * Os_TE_783204 Os_TE_783187 Chr1 6965320 6965321 + SZ-9LTR 965 0.0013 (4/2989) 0 * Os_TE_783186 Os_TE_783186 Chr1 6965316 6965315 - SZ-9LTR 965 0.0013 (4/2994) 0 * Os_TE_783187 Os_TE_783174 Chr1 6961778 6961779 - RPO_OS 1983 0.0163 (48/2947) -1 * * Os_TE_783161 Chr1 6958820 6958821 + NDNA1TNA_OS 334 0.5611 (1626/2898) 0 * * Os_TE_783157 Chr1 6957003 6957002 + STOWAWAY51_OS 246 0.0003 (1/2948) 0 * * Os_TE_783156 Chr1 6956997 6956996 - CENTRE 280 0.0003 (1/2950) 0 * * Os_TE_783144 Chr1 6953072 6953071 - RETRO1_LTR 8314 0.0611 (38/622) 0 * * Os_TE_783108 Chr1 6947315 6947316 + INDITTO 263 0.0027 (8/2992) 0 * Os_TE_783107 Os_TE_783107 Chr1 6947313 6947312 - INDITTO 263 0.0027 (8/2994) 0 * Os_TE_783108 Os_TE_783057 Chr1 6918343 6918344 + COPI2_LTR 4733 0.0080 (24/2995) 0 * Os_TE_783056 Os_TE_783056 Chr1 6918339 6918338 - COPI2_LTR 4733 0.0080 (24/2994) 0 * Os_TE_783057 Os_TE_783044 Chr1 6913360 6913361 + SPMLIKE 10989 0.0204 (61/2989) 0 * * Os_TE_783030 Chr1 6905458 6905459 - SC-3_LTR 5748 0.0004 (1/2410) 0 * * Os_TE_783028 Chr1 6902248 6902249 + SC-8_LTR 4951 0.0003 (1/2999) 0 * Os_TE_783027 Os_TE_783027 Chr1 6902244 6902243 - SC-8_LTR 4951 0.0003 (1/2998) 0 * Os_TE_783028 Os_TE_783024 Chr1 6899517 6899518 - SC-8_LTR 4951 0.0003 (1/2995) 0 * Os_TE_783023 Os_TE_783023 Chr1 6899513 6899512 + ORSiTERTOOT00381 4988 0.0003 (1/2989) 0 * Os_TE_783024 Os_TE_783021 Chr1 6897489 6897490 - ORSiTETNOOT00200 3563 0.5007 (1396/2788) 0 * Os_TE_783020 Os_TE_783020 Chr1 6897482 6897481 + TWIF 586 0.5283 (1540/2915) 0 * Os_TE_783021 Os_TE_783016 Chr1 6894977 6894978 - SC-3_LTR 5748 0.0003 (1/2977) 0 * Os_TE_783015 Os_TE_783015 Chr1 6894973 6894972 + ORSiTERTOOT00296 5553 0.0003 (1/2975) 0 * Os_TE_783016 Os_TE_782996 Chr1 6884760 6884761 + COPIA2-LTR_OS 6433 0.0004 (1/2851) 0 * Os_TE_782995 Os_TE_782995 Chr1 6884756 6884755 - COPIA2-LTR_OS 6433 0.0004 (1/2840) 0 * Os_TE_782996 Os_TE_782992 Chr1 6884086 6884087 + MuDR4_OS 7610 0.0212 (63/2970) 0 * * Os_TE_782962 Chr1 6874696 6874695 + CACTA-B 1103 0.0428 (128/2994) 0 * * Os_TE_782959 Chr1 6874096 6874095 + CACTA-D 1038 0.5323 (1580/2968) 0 * Os_TE_782958 Os_TE_782958 Chr1 6874095 6874096 - CACTA-I 1124 0.5231 (1530/2925) 0 * Os_TE_782959 Os_TE_782948 Chr1 6871782 6871783 + INDITTO 263 0.0043 (13/2991) 0 * Os_TE_782947 Os_TE_782947 Chr1 6871780 6871779 - INDITTO 263 0.0043 (13/2990) 0 * Os_TE_782948 Os_TE_782945 Chr1 6871537 6871538 + ORSiTERTOOT00034 791 0.0003 (1/2948) 0 * * Os_TE_782931 Chr1 6865371 6865025 + NDNA2TNA_OS 346 0.4774 (1402/2937) 1 Intact Os_TE_782927 Os_TE_782927 Chr1 6865024 6865371 - NDNA2TNA_OS 346 0.4854 (1434/2954) 1 Intact Os_TE_782931 Os_TE_782883 Chr1 6849245 6849244 + RIREX_LTR 8828 0.0010 (3/2914) 0 * * Os_TE_782817 Chr1 6825855 6825856 - TNR2A 152 0.1177 (353/2999) 0 * Os_TE_782816 Os_TE_782816 Chr1 6825847 6825846 + TNR2A 152 0.1162 (348/2996) 0 * Os_TE_782817 Os_TE_782814 Chr1 6825050 6825051 + COPIA2-LTR_OS 6433 0.0017 (1/584) 0 * Os_TE_782813 Os_TE_782813 Chr1 6825046 6825045 - COPIA2-LTR_OS 6433 0.0003 (1/2970) 0 * Os_TE_782814 Os_TE_782806 Chr1 6822153 6822154 - COPI2_LTR 4733 0.0007 (2/2992) 0 * Os_TE_782805 Os_TE_782805 Chr1 6822149 6822148 + COPI2_LTR 4733 0.0007 (2/2994) 0 * Os_TE_782806 Os_TE_782802 Chr1 6820131 6820130 - NDNA1TNA_OS 334 0.0462 (138/2989) 0 * * Os_TE_782801 Chr1 6819890 6819889 - ORSgTEMT02400246 177 0.0007 (2/2989) 0 * Os_TE_782800 Os_TE_782800 Chr1 6819889 6819890 - TYPEM 227 0.0007 (2/2984) 0 * Os_TE_782801 Os_TE_782786 Chr1 6818630 6818629 + STOWAWAY44_OS 240 0.0020 (6/2971) 0 * Os_TE_782785 Os_TE_782785 Chr1 6818627 6818628 - STOWAWAY44_OS 240 0.0020 (6/2973) 0 * Os_TE_782786 Os_TE_782782 Chr1 6817910 6817669 + ORSgTETNOOT00908 242 0.1931 (577/2988) 1 Intact * Os_TE_782781 Chr1 6817668 6817669 + CASTAWAY 364 0.0027 (8/2986) 0 * * Os_TE_782780 Chr1 6816141 6816140 - DNAUN1_OS 408 0.4127 (1229/2978) 0 * * Os_TE_782763 Chr1 6806849 6806850 - COPI2_LTR 4733 0.0007 (2/2985) 0 * Os_TE_782762 Os_TE_782762 Chr1 6806845 6806844 + COPI2_LTR 4733 0.0007 (2/2985) 0 * Os_TE_782763 Os_TE_782761 Chr1 6806766 6806767 + INDITTO 263 0.0010 (3/2994) 0 * Os_TE_782760 Os_TE_782760 Chr1 6806764 6806763 - INDITTO 263 0.0010 (3/2992) 0 * Os_TE_782761 Os_TE_782732 Chr1 6798573 6798572 - STOWAWAY51_OS 246 0.0007 (2/2987) 0 * Os_TE_782731 Os_TE_782731 Chr1 6798567 6798568 + STOWAWAY51_OS 246 0.0007 (2/2993) 0 * Os_TE_782732 Os_TE_782730 Chr1 6797956 6797957 - F770 284 0.1603 (479/2988) 0 * Os_TE_782729 Os_TE_782729 Chr1 6797954 6797953 + F770 284 0.1605 (480/2990) 0 * Os_TE_782730 Os_TE_782722 Chr1 6793149 6793150 + COPI2_LTR 4733 0.0003 (1/2991) 0 * * Os_TE_782714 Chr1 6785745 6785746 + SC-3_LTR 5748 0.0010 (3/2994) 0 * * Os_TE_782712 Chr1 6785325 6785326 + SC-8_LTR 4951 0.0043 (13/2991) 0 * * Os_TE_782695 Chr1 6779134 6779135 + ORSiTERTOOT00296 5553 0.0070 (21/2987) 0 * Os_TE_782694 Os_TE_782694 Chr1 6779130 6779129 - SC-3_LTR 5748 0.0070 (21/2987) 0 * Os_TE_782695 Os_TE_782691 Chr1 6773348 6773349 + COPI2_LTR 4733 0.0017 (5/2988) 0 * Os_TE_782690 Os_TE_782690 Chr1 6773344 6773343 - COPI2_LTR 4733 0.0030 (9/2995) 0 * Os_TE_782691 Os_TE_782628 Chr1 6723758 6723759 - RETROSAT2LTR 12796 0.0023 (7/2993) 0 * * Os_TE_782611 Chr1 6715681 6715682 - SZ-35LTR 3853 0.0010 (3/2935) 0 * Os_TE_782610 Os_TE_782610 Chr1 6715677 6715676 + RETROSAT4_LTR 13504 0.0010 (3/2931) 0 * Os_TE_782611 Os_TE_782609 Chr1 6715602 6715603 + ORSiTERTOOT00226 792 0.0010 (3/2917) 0 * Os_TE_782608 Os_TE_782608 Chr1 6715601 6715600 - SZ-22_LTR 4403 0.0010 (3/2918) 0 * Os_TE_782609 Os_TE_782606 Chr1 6715385 6715386 + ORSgTEMT01601036 240 0.4995 (1470/2943) 0 * * Os_TE_782605 Chr1 6713165 6713166 - TRUNCATOR2_LTR 2904 0.0335 (100/2988) 0 * Os_TE_782604 Os_TE_782604 Chr1 6713161 6713160 + ORSiCMCM00100019 2717 0.0315 (94/2988) 0 * Os_TE_782605 Os_TE_782602 Chr1 6710879 6710880 + ORSgTEMT05000092 279 0.0098 (16/1632) 0 * Os_TE_782601 Os_TE_782601 Chr1 6710877 6710876 - SUSU 279 0.4861 (1448/2979) 0 * Os_TE_782602 Os_TE_782599 Chr1 6710531 6710530 - TYPEM 227 0.0031 (9/2943) 0 * Os_TE_782598 Os_TE_782598 Chr1 6710530 6710531 - ORSgTEMT02400246 177 0.0031 (9/2935) 0 * Os_TE_782599 Os_TE_782557 Chr1 6686066 6686065 + ORSgTEMT01601122 212 0.0321 (96/2988) 0 * Os_TE_782556 Os_TE_782556 Chr1 6686063 6686064 + ORSgTEMT01601122 212 0.0344 (103/2992) 0 * Os_TE_782557 Os_TE_782549 Chr1 6684240 6684241 + OSTE20 496 0.0040 (12/2989) 0 * Os_TE_782548 Os_TE_782548 Chr1 6684236 6684235 + OSTE20 496 0.0037 (11/2988) 0 * Os_TE_782549 Os_TE_782547 Chr1 6684167 6684168 + STOWAWAY51_OS 246 0.0012 (3/2589) 0 * * Os_TE_782522 Chr1 6677344 6677345 + MPING 430 0.0003 (1/2991) 0 * Os_TE_782521 Os_TE_782521 Chr1 6677342 6677341 - MPING 430 0.0003 (1/2991) 0 * Os_TE_782522 Os_TE_782510 Chr1 6674332 6674333 + AMYLTP 383 0.2096 (627/2991) 0 * Os_TE_782509 Os_TE_782509 Chr1 6674324 6674323 - AMYLTP 383 0.2108 (631/2993) 0 * Os_TE_782510 Os_TE_782483 Chr1 6653048 6653049 - MPING 430 0.0007 (2/2740) 0 * Os_TE_782482 Os_TE_782482 Chr1 6653046 6653045 + MPING 430 0.0008 (2/2661) 0 * Os_TE_782483 Os_TE_782453 Chr1 6641607 6641608 + NDNA1TNA_OS 334 0.0003 (1/2951) 0 * * Os_TE_782441 Chr1 6639132 6639131 - STOWAWAY51_OS 246 0.0003 (1/2994) 0 * Os_TE_782440 Os_TE_782440 Chr1 6639129 6639130 - STOWAWAY51_OS 246 0.0003 (1/2992) 0 * Os_TE_782441 Os_TE_782329 Chr1 6602207 6602206 - COPIA2-LTR_OS 6433 0.0003 (1/2972) 0 * * Os_TE_782271 Chr1 6590503 6590504 + COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_782270 Os_TE_782270 Chr1 6590499 6590498 - COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_782271 Os_TE_782267 Chr1 6588257 6588256 + F569 228 0.0004 (1/2350) 0 * * Os_TE_782261 Chr1 6585209 6585210 + ORSiTERTOOT00296 5553 0.0010 (3/2993) 0 * Os_TE_782260 Os_TE_782260 Chr1 6585205 6585204 - SC-3_LTR 5748 0.0010 (3/2987) 0 * Os_TE_782261 Os_TE_782255 Chr1 6581510 6581509 - ORSgTEMT06100010 269 0.1667 (500/2999) 0 * Os_TE_782254 Os_TE_782254 Chr1 6581508 6581509 + ORSgTEMT06100010 269 0.1661 (496/2987) 0 * Os_TE_782255 Os_TE_782225 Chr1 6566603 6566602 + ORSgTERT00200961 124 0.0003 (1/2989) 0 * * Os_TE_782215 Chr1 6562912 6562911 + COPI2_LTR 4733 0.0003 (1/2961) 0 * * Os_TE_782205 Chr1 6560815 6560816 + SZ-55_LTR 10318 0.0016 (2/1252) 0 * * Os_TE_782198 Chr1 6559666 6559665 - TEMPINDAS 4259 0.0100 (14/1405) 0 * * Os_TE_782185 Chr1 6545871 6545872 - JOUZHENA 607 0.1934 (572/2957) 0 * Os_TE_782184 Os_TE_782184 Chr1 6545864 6545863 + JOUZHENA 607 0.1973 (586/2970) 0 * Os_TE_782185 Os_TE_782144 Chr1 6522468 6522469 - ORSiTERT00200154 9386 0.0714 (214/2996) 0 * Os_TE_782143 Os_TE_782143 Chr1 6522462 6522461 + TRUNCATOR 2918 0.0692 (207/2992) 0 * Os_TE_782144 Os_TE_782133 Chr1 6517827 6517826 + ORSgTETNOOT00792 273 0.4454 (261/586) -1 * * Os_TE_782130 Chr1 6517374 6517375 + AMYLTP 383 0.0283 (83/2930) 0 * * Os_TE_782122 Chr1 6516764 6516765 - AMYLTP 383 0.0017 (5/2945) 0 * Os_TE_782121 Os_TE_782121 Chr1 6516756 6516755 + AMYLTP 383 0.0014 (4/2949) 0 * Os_TE_782122 Os_TE_782117 Chr1 6516257 6516256 - SZ-22_LTR 4403 0.0003 (1/2959) 0 * * Os_TE_782097 Chr1 6500662 6500663 + Cassandra_OS-LTR 764 0.0003 (1/2992) 0 * Os_TE_782096 Os_TE_782096 Chr1 6500658 6500657 - Cassandra_OS-LTR 764 0.0003 (1/2993) 0 * Os_TE_782097 Os_TE_782066 Chr1 6487826 6487827 + SZ-48LTR 3632 0.3193 (948/2969) 0 * Os_TE_782065 Os_TE_782065 Chr1 6487822 6487821 - SZ-48LTR 3632 0.3139 (927/2953) 0 * Os_TE_782066 Os_TE_782048 Chr1 6471377 6471376 - ORSiCMCM00100014 10855 0.0021 (2/964) -1 * * Os_TE_782030 Chr1 6461975 6461974 - RETROSAT4_LTR 13504 0.0174 (4/230) -1 * * Os_TE_782029 Chr1 6461682 6461683 - RIREX_LTR 8828 0.0004 (1/2789) 0 * Os_TE_782028 Os_TE_782028 Chr1 6461678 6461677 + RIREX_LTR 8828 0.0004 (1/2796) 0 * Os_TE_782029 Os_TE_782023 Chr1 6458772 6458771 - SZ-67LTR 1540 0.1039 (307/2954) 0 * * Os_TE_781985 Chr1 6439673 6439672 - TYPEH 309 0.0017 (5/2995) 0 * * Os_TE_781965 Chr1 6430000 6430001 - RETRO2_LTR 12874 0.0857 (252/2942) 0 * * Os_TE_781935 Chr1 6418584 6418585 + ORSgTETNOOT00032 218 0.0845 (235/2781) 0 * * Os_TE_781915 Chr1 6415285 6415286 + SZ-48LTR 3632 0.1099 (321/2920) 0 * Os_TE_781914 Os_TE_781914 Chr1 6415281 6415280 - SZ-48LTR 3632 0.1063 (309/2908) 0 * Os_TE_781915 Os_TE_781880 Chr1 6405146 6405147 + OSR3_LTR 5201 0.0007 (2/2994) 0 * Os_TE_781879 Os_TE_781879 Chr1 6405142 6405141 - OSR3_LTR 5201 0.0007 (2/2990) 0 * Os_TE_781880 Os_TE_781865 Chr1 6402159 6402160 - SZ-48LTR 3632 0.0120 (36/2988) 0 * * Os_TE_781848 Chr1 6393663 6393662 + COPI2_LTR 4733 0.0003 (1/2997) 0 * * Os_TE_781839 Chr1 6387163 6387164 - SZ-22_LTR 4403 0.0003 (1/2989) 0 * * Os_TE_781810 Chr1 6371370 6371369 + ORSgTETN00200005 1121 0.1702 (491/2885) 0 * Os_TE_781809 Os_TE_781809 Chr1 6371369 6371370 + CACTA-H 1152 0.1777 (519/2920) 0 * Os_TE_781810 Os_TE_781800 Chr1 6369756 6369755 + COPI2_LTR 4733 0.1781 (532/2987) 0 * * Os_TE_781785 Chr1 6366408 6366407 - ENSPM3_OS 10837 0.0017 (5/2992) 0 * * Os_TE_781779 Chr1 6361310 6361309 + ORSgTEMT01701478 178 0.0017 (5/2967) 0 * * Os_TE_781763 Chr1 6358881 6358880 - F770 284 0.0898 (266/2963) 0 * * Os_TE_781759 Chr1 6357736 6357735 + ORSgTEMT00900533 246 0.0070 (21/2983) 0 * Os_TE_781758 Os_TE_781758 Chr1 6357732 6357733 + ORSgTEMT00900644 248 0.0064 (19/2980) 0 * Os_TE_781759 Os_TE_781747 Chr1 6354569 6354570 - SZ-35LTR 3853 0.5147 (1541/2994) 0 * Os_TE_781746 Os_TE_781746 Chr1 6354565 6354564 + RETROSAT4_LTR 13504 0.4945 (1432/2896) 0 * Os_TE_781747 Os_TE_781745 Chr1 6353398 6353399 - TYPEU1 380 0.0892 (262/2936) 0 * * Os_TE_781735 Chr1 6351703 6351702 + RETROSAT4_LTR 13504 0.0126 (37/2927) 0 * * Os_TE_781709 Chr1 6341272 6341273 - SINE9_OS 293 0.0070 (21/2997) 0 * * Os_TE_781707 Chr1 6340486 6340485 + ORSgTETNOOT00792 273 0.0077 (22/2867) 0 * * Os_TE_781693 Chr1 6336360 6336361 + RETRO2_LTR 12874 0.0104 (30/2888) 0 * Os_TE_781692 Os_TE_781692 Chr1 6336356 6336355 - RETRO2_LTR 12874 0.0106 (31/2913) 0 * Os_TE_781693 Os_TE_781661 Chr1 6323633 6323634 + RETRO2_LTR 12874 0.0101 (30/2973) 0 * Os_TE_781660 Os_TE_781660 Chr1 6323629 6323628 - RETRO2_LTR 12874 0.0101 (30/2971) 0 * Os_TE_781661 Os_TE_781602 Chr1 6310139 6310140 - ORSgTEMT00400010 151 0.0004 (1/2660) 0 * * Os_TE_781596 Chr1 6307845 6307844 - STOWAWAY1_OS 149 0.0070 (21/2985) 0 * * Os_TE_781595 Chr1 6307722 6307721 + ORSgTEMT01701591 154 0.0070 (21/2988) 0 * * Os_TE_781551 Chr1 6291271 6291270 + STOWAWAY51_OS 246 0.0737 (217/2946) 0 * Os_TE_781550 Os_TE_781550 Chr1 6291265 6291266 + ORSgTEMT01601591 242 0.0595 (174/2925) 0 * Os_TE_781551 Os_TE_781546 Chr1 6288706 6288707 - ORSgTEMT01600768 234 0.0142 (22/1552) 0 * * Os_TE_781506 Chr1 6281202 6281201 - DITTO-2 235 0.0074 (22/2990) 0 * * Os_TE_781505 Chr1 6280113 6280112 - STOWAWAY51_OS 246 0.0003 (1/2949) 0 * Os_TE_781504 Os_TE_781504 Chr1 6280107 6280108 + STOWAWAY51_OS 246 0.0003 (1/2941) 0 * Os_TE_781505 Os_TE_781493 Chr1 6273959 6273960 + RIREX_LTR 8828 0.0064 (19/2946) 0 * Os_TE_781492 Os_TE_781492 Chr1 6273955 6273954 - RIREX_LTR 8828 0.0075 (22/2946) 0 * Os_TE_781493 Os_TE_781471 Chr1 6270576 6270575 + ORSgTEMT01701109 142 0.0073 (22/2997) 0 * Os_TE_781470 Os_TE_781470 Chr1 6270573 6270574 - ORSgTEMT01700804 154 0.0070 (21/2983) 0 * Os_TE_781471 Os_TE_781431 Chr1 6253740 6253739 + ORSgTETNOOT01097 250 0.0015 (3/2000) 0 * * Os_TE_781411 Chr1 6239161 6239162 - INDITTO 263 0.0003 (1/2993) 0 * Os_TE_781410 Os_TE_781410 Chr1 6239159 6239158 - ORSgTETNOOT02417 265 0.0003 (1/2994) 0 * Os_TE_781411 Os_TE_781403 Chr1 6237045 6237044 - STOWAWAY51_OS 246 0.0007 (2/2974) 0 * Os_TE_781402 Os_TE_781402 Chr1 6237039 6237040 + STOWAWAY51_OS 246 0.0007 (2/2970) 0 * Os_TE_781403 Os_TE_781400 Chr1 6236883 6236884 + STOWAWAY51_OS 246 0.0003 (1/2990) 0 * * Os_TE_781382 Chr1 6231610 6231611 + SPMLIKE 10989 0.3110 (826/2656) 0 * Os_TE_781381 Os_TE_781381 Chr1 6231608 6231607 - ORSgTETN00200001 10994 0.3336 (928/2782) 0 * Os_TE_781382 Os_TE_781371 Chr1 6229052 6229051 + CACTA-H 1152 0.3247 (930/2864) 0 * * Os_TE_781361 Chr1 6227191 6227192 - STOWAWAY51_OS 246 0.0010 (3/2988) 0 * Os_TE_781360 Os_TE_781360 Chr1 6227190 6227189 - STOWAWAY51_OS 246 0.0010 (3/2989) 0 * Os_TE_781361 Os_TE_781359 Chr1 6227184 6227185 + STOWAWAY51_OS 246 0.0010 (3/2981) 0 * * Os_TE_781358 Chr1 6226959 6226960 + SPMLIKE 10989 0.3175 (914/2879) 0 * Os_TE_781357 Os_TE_781357 Chr1 6226957 6226956 - ORSgTETN00200001 10994 0.3183 (941/2956) 0 * Os_TE_781358 Os_TE_781356 Chr1 6226945 6226946 - INDITTO 263 0.0243 (71/2921) 0 * Os_TE_781355 Os_TE_781355 Chr1 6226943 6226942 + INDITTO 263 0.0350 (73/2084) 0 * Os_TE_781356 Os_TE_781354 Chr1 6226715 6226714 + ORSiTERTOOT00074 4935 0.0003 (1/2943) 0 * * Os_TE_781339 Chr1 6220556 6220220 + NDNA1TNA_OS 334 0.1983 (594/2995) 1 Intact Os_TE_781338 Os_TE_781338 Chr1 6220218 6220553 + ORSgTEMT00100531 325 0.1982 (592/2987) 1 Intact Os_TE_781339 Os_TE_781337 Chr1 6219665 6219664 - STOWAWAY51_OS 246 0.0003 (1/2946) 0 * * Os_TE_781322 Chr1 6206481 6206482 + ORSgTEMT06100010 269 0.8483 (2521/2972) 0 * * Os_TE_781312 Chr1 6203421 6203420 + SZ-40LTR 2465 0.8449 (2484/2940) 0 * * Os_TE_781284 Chr1 6180322 6180321 - ORSiTERTOOT00332 5395 0.0003 (1/2997) 0 * * Os_TE_781276 Chr1 6178139 6174315 - SZ-35LTR 3853 0.1721 (510/2964) 1 Intact Os_TE_781271 Os_TE_781271 Chr1 6174315 6178139 + SZ-35LTR 3853 0.1635 (472/2887) 1 Intact Os_TE_781276 Os_TE_781270 Chr1 6174276 6174277 + RETRO2A_LTR 12895 0.1954 (567/2901) 0 * Os_TE_781269 Os_TE_781269 Chr1 6174272 6174271 - RETRO1_LTR 8314 0.1900 (526/2768) 0 * Os_TE_781270 Os_TE_781261 Chr1 6170580 6170581 + MPING 430 0.0007 (2/2997) 0 * Os_TE_781260 Os_TE_781260 Chr1 6170578 6170577 - MPING 430 0.0007 (2/2998) 0 * Os_TE_781261 Os_TE_781258 Chr1 6168405 6168406 + OSTONOR1_LTR 6440 0.0174 (52/2984) 0 * * Os_TE_781256 Chr1 6167718 6161933 + COPIA2-LTR_OS 6433 0.1697 (507/2988) 1 Intact Os_TE_781252 Os_TE_781252 Chr1 6161933 6167718 - COPIA2-LTR_OS 6433 0.1708 (511/2991) 1 Intact Os_TE_781256 Os_TE_781212 Chr1 6144945 6144946 - DASIA-2 1198 0.0003 (1/2929) 0 * * Os_TE_781202 Chr1 6142331 6142332 - ORSgTEMT03600096 526 0.0004 (1/2737) 0 * * Os_TE_781190 Chr1 6131514 6131515 + F569 228 0.0003 (1/2981) 0 * Os_TE_781189 Os_TE_781189 Chr1 6131512 6131511 - F569 228 0.0003 (1/2981) 0 * Os_TE_781190 Os_TE_781181 Chr1 6130014 6130015 - RIREX_LTR 8828 0.1857 (555/2989) 0 * Os_TE_781180 Os_TE_781180 Chr1 6130010 6130009 + RIREX_LTR 8828 0.1861 (555/2983) 0 * Os_TE_781181 Os_TE_781162 Chr1 6119462 6119463 - STOWAWAY51_OS 246 0.0003 (1/2894) 0 * * Os_TE_781126 Chr1 6100011 6100012 - INDITTO 263 0.3701 (1097/2964) 0 * * Os_TE_781102 Chr1 6094296 6094297 - ORSgTEMT00600085 364 0.0013 (4/2991) 0 * Os_TE_781101 Os_TE_781101 Chr1 6094294 6094293 + CASTAWAY 364 0.0013 (4/2994) 0 * Os_TE_781102 Os_TE_781096 Chr1 6093134 6093133 + ORSgTEMT02400144 178 0.1859 (556/2991) 0 * Os_TE_781095 Os_TE_781095 Chr1 6093133 6093134 + ORSgTEMT02400041 225 0.1853 (553/2985) 0 * Os_TE_781096 Os_TE_781094 Chr1 6092268 6092267 - ORSgTEMT01400015 213 0.1810 (540/2984) 0 * Os_TE_781093 Os_TE_781093 Chr1 6092264 6092265 - STOWAWAY9_OS 235 0.1852 (554/2991) 0 * Os_TE_781094 Os_TE_781090 Chr1 6090986 6090654 + OLO24 345 0.8141 (2330/2862) 1 Intact * Os_TE_781087 Chr1 6090479 6090478 + ORSgTEMT00501504 140 0.1912 (563/2944) 0 * * Os_TE_781084 Chr1 6089971 6085872 - RPO_OS 1983 0.8214 (2415/2940) 1 Intact * Os_TE_781072 Chr1 6084085 6084084 - ORSgTETNOOT00762 266 0.1608 (462/2874) 0 * * Os_TE_781069 Chr1 6083836 6083837 + AMYLTP 383 0.1613 (397/2461) 0 * * Os_TE_781067 Chr1 6083508 6083509 - STOWAWAY51_OS 246 0.0003 (1/2982) 0 * * Os_TE_781066 Chr1 6082924 6082925 - RIRE2_LTR 11306 0.0148 (44/2983) 0 * Os_TE_781065 Os_TE_781065 Chr1 6082920 6082919 - ORSgTERT00201216 11284 0.0144 (43/2984) 0 * Os_TE_781066 Os_TE_781051 Chr1 6079920 6079919 - ORSgTEMT01600639 228 0.1303 (365/2802) 0 * Os_TE_781050 Os_TE_781050 Chr1 6079917 6079918 - ORSgTEMT01601208 238 0.1640 (475/2897) 0 * Os_TE_781051 Os_TE_781048 Chr1 6079187 6079188 + ORSgTEMT00500852 140 0.1738 (515/2964) 0 * * Os_TE_781047 Chr1 6079152 6079151 - ORSgTETNOOT00544 147 0.1723 (509/2955) 0 * Os_TE_781046 Os_TE_781046 Chr1 6079151 6079152 + ORSgTEMT00502094 140 0.1832 (546/2980) 0 * Os_TE_781047 Os_TE_781040 Chr1 6074544 6074869 - ORSgTEMT01900024 348 0.8225 (2438/2964) 1 Intact * Os_TE_781037 Chr1 6073554 6073555 + NDNA1TNA_OS 334 0.0003 (1/2993) 0 * * Os_TE_781024 Chr1 6062958 6071828 - HARB-N1_OS 2589 0.8212 (2443/2975) 1 Intact * Os_TE_781007 Chr1 6060860 6060859 + CLOUD 734 0.1633 (476/2915) 0 * * Os_TE_780998 Chr1 6057241 6057242 - MPING 430 0.0013 (4/2996) 0 * Os_TE_780997 Os_TE_780997 Chr1 6057239 6057238 + MPING 430 0.0016 (4/2496) 0 * Os_TE_780998 Os_TE_780970 Chr1 6046991 6046992 + RETROSAT3_LTR 11537 0.0003 (1/2990) 0 * Os_TE_780969 Os_TE_780969 Chr1 6046987 6046986 - RETROSAT2LTRA 3112 0.0003 (1/2986) 0 * Os_TE_780970 Os_TE_780960 Chr1 6044859 6045351 - DNAUN1_OS 408 0.8300 (2451/2953) 1 Intact * Os_TE_780952 Chr1 6043278 6043029 - ORSgTEMT00900099 250 0.8290 (2467/2976) 1 Intact Os_TE_780950 Os_TE_780950 Chr1 6043029 6043278 + ORSgTEMT00900319 250 0.8305 (2465/2968) 1 Intact Os_TE_780952 Os_TE_780947 Chr1 6041854 6041855 + RETRO2A_LTR 12895 0.1220 (364/2983) 0 * Os_TE_780946 Os_TE_780946 Chr1 6041850 6041849 - RETRO2_LTR 12874 0.1223 (365/2985) 0 * Os_TE_780947 Os_TE_780873 Chr1 6022971 6022972 - INDITTO 263 0.0030 (9/2992) 0 * Os_TE_780872 Os_TE_780872 Chr1 6022969 6022968 + INDITTO 263 0.0030 (9/2991) 0 * Os_TE_780873 Os_TE_780856 Chr1 6015853 6015854 + SZ-67LTR 1540 0.0010 (3/2995) 0 * Os_TE_780855 Os_TE_780855 Chr1 6015849 6015848 - RETROSAT5_LTR 13878 0.0010 (3/2991) 0 * Os_TE_780856 Os_TE_780850 Chr1 6014561 6014299 + INDITTO 263 0.3151 (914/2901) 1 Intact Os_TE_780849 Os_TE_780849 Chr1 6014299 6014561 - INDITTO 263 0.3252 (945/2906) 1 Intact Os_TE_780850 Os_TE_780843 Chr1 6010862 6010863 - NDNA1TNA_OS 334 0.0017 (5/2915) 0 * * Os_TE_780836 Chr1 6009557 6009558 - AMYLTP 383 0.1899 (559/2944) 0 * Os_TE_780835 Os_TE_780835 Chr1 6009549 6009548 + AMYLTP 383 0.1775 (517/2913) 0 * Os_TE_780836 Os_TE_780831 Chr1 6007980 6007981 - ORSgTEMT01602404 253 0.0017 (5/2993) 0 * * Os_TE_780811 Chr1 5994868 5994867 + RIREX_LTR 8828 0.0017 (5/2994) 0 * * Os_TE_780810 Chr1 5994367 5994368 + RIREX_LTR 8828 0.0017 (5/2997) 0 * Os_TE_780809 Os_TE_780809 Chr1 5994363 5994362 - RIREX_LTR 8828 0.0017 (5/2995) 0 * Os_TE_780810 Os_TE_780801 Chr1 5991470 5991471 + OSTE20 496 0.3071 (916/2983) 0 * * Os_TE_780788 Chr1 5986993 5986994 + RETRO2_LTR 12874 0.1778 (521/2930) 0 * * Os_TE_780775 Chr1 5982881 5982882 - MuDR3_OS 8604 0.2913 (862/2959) 0 * Os_TE_780774 Os_TE_780774 Chr1 5982872 5982871 - MuDR3_OS 8604 0.2956 (877/2967) 0 * Os_TE_780775 Os_TE_780744 Chr1 5974498 5974499 - ORSgTETN00200001 10994 0.0003 (1/2967) 0 * * Os_TE_780688 Chr1 5956926 5956925 + DS-RICE3N 525 0.0003 (1/2995) 0 * * Os_TE_780686 Chr1 5956806 5956807 - OSTE20 496 0.0003 (1/2993) 0 * * Os_TE_780674 Chr1 5955401 5955402 - AMYLTP 383 0.2359 (704/2984) 0 * Os_TE_780673 Os_TE_780673 Chr1 5955393 5955392 + AMYLTP 383 0.2361 (704/2982) 0 * Os_TE_780674 Os_TE_780663 Chr1 5949384 5949385 - TRSA_OS 353 0.0003 (1/2985) 0 * * Os_TE_780636 Chr1 5941632 5941631 + ORSgTETNOOT02308 270 0.0139 (40/2874) 0 * * Os_TE_780633 Chr1 5940568 5940569 - MPING 430 0.0127 (38/2986) 0 * * Os_TE_780626 Chr1 5935342 5935343 - SC-3_LTR 5748 0.0003 (1/2981) 0 * * Os_TE_780589 Chr1 5898279 5898280 + SC-8_LTR 4951 0.0040 (12/2968) 0 * Os_TE_780588 Os_TE_780588 Chr1 5898275 5898274 - SC-8_LTR 4951 0.0040 (12/2978) 0 * Os_TE_780589 Os_TE_780549 Chr1 5880853 5880854 - RIREX_LTR 8828 0.0023 (7/2996) 0 * Os_TE_780548 Os_TE_780548 Chr1 5880849 5880848 + RIREX_LTR 8828 0.0023 (7/2992) 0 * Os_TE_780549 Os_TE_780546 Chr1 5879727 5879728 - RIREX_LTR 8828 0.0003 (1/2988) 0 * Os_TE_780545 Os_TE_780545 Chr1 5879723 5879722 + RIREX_LTR 8828 0.0003 (1/2992) 0 * Os_TE_780546 Os_TE_780521 Chr1 5870644 5870645 - F569 228 0.0024 (7/2911) 0 * Os_TE_780520 Os_TE_780520 Chr1 5870642 5870641 + F569 228 0.0017 (5/2916) 0 * Os_TE_780521 Os_TE_780517 Chr1 5868793 5868794 - RETROSAT2LTRA 3112 0.0144 (43/2977) 0 * * Os_TE_780496 Chr1 5862324 5862509 - OsSN3 183 0.6901 (2055/2978) 1 Intact * Os_TE_780495 Chr1 5862245 5862246 - ORSgTEMT01602413 239 0.3218 (959/2980) 0 * * Os_TE_780491 Chr1 5861587 5861588 - ORSgTEMT01400014 209 0.3019 (879/2912) 0 * * Os_TE_780489 Chr1 5861511 5861512 - SZ-22_LTR 4403 0.0004 (1/2815) 0 * Os_TE_780488 Os_TE_780488 Chr1 5861507 5861506 + ORSiTERTOOT00226 792 0.0003 (1/2947) 0 * Os_TE_780489 Os_TE_780487 Chr1 5861489 5861490 - RETROSAT4_LTR 13504 0.1119 (329/2939) 0 * Os_TE_780486 Os_TE_780486 Chr1 5861485 5861484 + RETROSAT4_LTR 13504 0.1094 (321/2935) 0 * Os_TE_780487 Os_TE_780484 Chr1 5859988 5859987 - COPIA2-LTR_OS 6433 0.0003 (1/2955) 0 * * Os_TE_780466 Chr1 5855254 5855253 - OSLINE1_2 6317 0.1137 (330/2903) 0 * * Os_TE_780464 Chr1 5855059 5855060 + RETRO2_LTR 12874 0.1114 (332/2979) 0 * Os_TE_780463 Os_TE_780463 Chr1 5855055 5855054 - RETRO1_LTR 8314 0.1120 (334/2983) 0 * Os_TE_780464 Os_TE_780443 Chr1 5847134 5847135 + RIREX_LTR 8828 0.0136 (40/2942) 0 * * Os_TE_780427 Chr1 5836218 5836219 - ORSgTETNOOT02417 265 0.0514 (154/2999) 0 * * Os_TE_780426 Chr1 5836127 5836126 + ORSgTEMT00500201 140 0.0510 (153/2998) 0 * Os_TE_780425 Os_TE_780425 Chr1 5836123 5836124 - ORSgTEMT00501356 145 0.0507 (152/2997) 0 * Os_TE_780426 Os_TE_780420 Chr1 5835152 5835151 + STOWAWAY51_OS 246 0.0004 (1/2856) 0 * Os_TE_780419 Os_TE_780419 Chr1 5835146 5835147 - STOWAWAY51_OS 246 0.0003 (1/2994) 0 * Os_TE_780420 Os_TE_780391 Chr1 5830928 5830927 - MPING 430 0.0007 (2/2984) 0 * * Os_TE_780377 Chr1 5817547 5817548 + ORSiTERTOOT00296 5553 0.0005 (1/2219) 0 * Os_TE_780376 Os_TE_780376 Chr1 5817543 5817542 - SC-3_LTR 5748 0.0003 (1/2992) 0 * Os_TE_780377 Os_TE_780369 Chr1 5811977 5811978 + KIDDOD 279 0.0546 (163/2987) 0 * Os_TE_780368 Os_TE_780368 Chr1 5811975 5811974 - KIDDOD 279 0.0535 (160/2988) 0 * Os_TE_780369 Os_TE_780338 Chr1 5794585 5794586 + MPING 430 0.0003 (1/2996) 0 * Os_TE_780337 Os_TE_780337 Chr1 5794583 5794582 - MPING 430 0.0003 (1/2994) 0 * Os_TE_780338 Os_TE_780334 Chr1 5793712 5793713 + MPING 430 0.0003 (1/2986) 0 * Os_TE_780333 Os_TE_780333 Chr1 5793710 5793709 - MPING 430 0.0003 (1/2988) 0 * Os_TE_780334 Os_TE_780329 Chr1 5792769 5792768 - STOWAWAY1_OS 149 0.2406 (714/2967) 0 * * Os_TE_780326 Chr1 5791640 5791639 - STOWAWAY51_OS 246 0.0003 (1/2999) 0 * Os_TE_780325 Os_TE_780325 Chr1 5791637 5791638 - STOWAWAY51_OS 246 0.0003 (1/2994) 0 * Os_TE_780326 Os_TE_780313 Chr1 5786717 5786384 + NDNA1TNA_OS 334 0.7163 (2113/2950) 1 Intact Os_TE_780312 Os_TE_780312 Chr1 5786381 5786718 + ORSgTEMT00100272 356 0.7240 (2151/2971) 1 Intact Os_TE_780313 Os_TE_780301 Chr1 5783239 5783238 + NDNA1TNA_OS 334 0.0134 (40/2993) 0 * Os_TE_780300 Os_TE_780300 Chr1 5783238 5783239 + ORSgTEMT00100272 356 0.0130 (39/2997) 0 * Os_TE_780301 Os_TE_780289 Chr1 5780922 5781141 - ORSgTETNOOT01337 247 0.7573 (2134/2818) 1 Intact * Os_TE_780288 Chr1 5780788 5780789 - SZ-7A_LTR 11400 0.2592 (730/2816) 0 * Os_TE_780287 Os_TE_780287 Chr1 5780784 5780783 + SZ-33LTR 575 0.2551 (721/2826) 0 * Os_TE_780288 Os_TE_780269 Chr1 5763473 5763472 - COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * * Os_TE_780206 Chr1 5734931 5734930 + ORSiTERTOOT00296 5553 0.0013 (4/2995) 0 * * Os_TE_780204 Chr1 5734465 5734466 + COPIA2-LTR_OS 6433 0.0311 (93/2990) 0 * * Os_TE_780194 Chr1 5727851 5727852 - COPI2_LTR 4733 0.0003 (1/2993) 0 * Os_TE_780193 Os_TE_780193 Chr1 5727847 5727846 + COPI2_LTR 4733 0.0003 (1/2992) 0 * Os_TE_780194 Os_TE_780192 Chr1 5726246 5726245 + ORSgTETNOOT01834 251 0.1120 (335/2990) 0 * * Os_TE_780186 Chr1 5721433 5721432 - ORSiTERTOOT00254 1927 0.0003 (1/2998) 0 * * Os_TE_780156 Chr1 5713372 5713371 - ORSgTEMT01602317 236 0.0007 (2/2979) 0 * * Os_TE_780153 Chr1 5712370 5712369 + INDITTO 263 0.0352 (101/2871) 0 * * Os_TE_780149 Chr1 5710966 5710965 - STOWAWAY51_OS 246 0.0017 (5/2972) 0 * Os_TE_780148 Os_TE_780148 Chr1 5710963 5710964 - STOWAWAY51_OS 246 0.0017 (5/2965) 0 * Os_TE_780149 Os_TE_780146 Chr1 5710554 5710555 - TESS 244 0.1796 (527/2935) 0 * Os_TE_780145 Os_TE_780145 Chr1 5710547 5710546 + ORSgTETNOOT01668 244 0.1862 (550/2954) 0 * Os_TE_780146 Os_TE_780133 Chr1 5708957 5708958 + STOWAWAY21_OS 243 0.4662 (1384/2969) 0 * * Os_TE_780131 Chr1 5708806 5708807 + AMYLTP 383 0.0017 (5/2981) 0 * Os_TE_780130 Os_TE_780130 Chr1 5708798 5708797 - AMYLTP 383 0.0017 (5/2980) 0 * Os_TE_780131 Os_TE_780128 Chr1 5708412 5708413 + ORSiTERTOOT00074 4935 0.0003 (1/2965) 0 * Os_TE_780127 Os_TE_780127 Chr1 5708408 5708407 - ORSiTERTOOT00074 4935 0.0003 (1/2967) 0 * Os_TE_780128 Os_TE_780119 Chr1 5705786 5705787 - MPING 430 0.0037 (11/2988) 0 * Os_TE_780118 Os_TE_780118 Chr1 5705784 5705783 + MPING 430 0.0034 (10/2985) 0 * Os_TE_780119 Os_TE_780110 Chr1 5703350 5703349 - STOWAWAY51_OS 246 0.0003 (1/2991) 0 * Os_TE_780109 Os_TE_780109 Chr1 5703344 5703345 + STOWAWAY51_OS 246 0.0003 (1/2995) 0 * Os_TE_780110 Os_TE_780088 Chr1 5697334 5697335 + Cassandra_OS-LTR 764 0.1219 (364/2986) 0 * Os_TE_780087 Os_TE_780087 Chr1 5697330 5697329 - Cassandra_OS-LTR 764 0.1225 (366/2987) 0 * Os_TE_780088 Os_TE_780032 Chr1 5679035 5679036 + RIREX_LTR 8828 0.0003 (1/2980) 0 * Os_TE_780031 Os_TE_780031 Chr1 5679031 5679030 - RIREX_LTR 8828 0.0003 (1/2975) 0 * Os_TE_780032 Os_TE_780025 Chr1 5676425 5676426 + ORSiTERTOOT00296 5553 0.0003 (1/2995) 0 * Os_TE_780024 Os_TE_780024 Chr1 5676421 5676420 - SC-3_LTR 5748 0.0003 (1/2992) 0 * Os_TE_780025 Os_TE_779984 Chr1 5660608 5660609 - OSTE33 1012 0.4027 (1152/2861) 0 * * Os_TE_779918 Chr1 5642223 5642222 + STOWAWAY51_OS 246 0.1670 (445/2665) 0 * Os_TE_779917 Os_TE_779917 Chr1 5642217 5642218 - STOWAWAY51_OS 246 0.1672 (458/2739) 0 * Os_TE_779918 Os_TE_779886 Chr1 5635448 5635449 - RIREX_LTR 8828 0.0024 (7/2958) 0 * Os_TE_779885 Os_TE_779885 Chr1 5635444 5635443 + RIREX_LTR 8828 0.0024 (7/2963) 0 * Os_TE_779886 Os_TE_779812 Chr1 5611485 5611484 - ORSgTEMT01400012 212 0.0014 (4/2820) 0 * * Os_TE_779794 Chr1 5607687 5607688 - MPING 430 0.0003 (1/2991) 0 * Os_TE_779793 Os_TE_779793 Chr1 5607685 5607684 + MPING 430 0.0003 (1/2992) 0 * Os_TE_779794 Os_TE_779749 Chr1 5576647 5576648 + SZ-29LTR 1393 0.0195 (57/2927) 0 * * Os_TE_779748 Chr1 5576644 5576643 - SZ-20LTR 1395 0.6058 (1809/2986) 0 * * Os_TE_779744 Chr1 5575739 5575740 + ORSgTEMT01602336 230 0.0004 (1/2841) 0 * * Os_TE_779714 Chr1 5556124 5556125 - HARB-1_OS 5166 0.0007 (2/2957) 0 * Os_TE_779713 Os_TE_779713 Chr1 5556122 5556121 + HARB-1_OS 5166 0.0003 (1/2934) 0 * Os_TE_779714 Os_TE_779694 Chr1 5551876 5551877 + RETROSAT4_LTR 13504 0.0092 (12/1307) 0 * Os_TE_779693 Os_TE_779693 Chr1 5551872 5551871 - SZ-35LTR 3853 0.6050 (1751/2894) 0 * Os_TE_779694 Os_TE_779688 Chr1 5551454 5551455 + ORSiTERTOOT00226 792 0.0003 (1/2994) 0 * * Os_TE_779687 Chr1 5551120 5551121 + BUHUI 375 0.0003 (1/2962) 0 * * Os_TE_779680 Chr1 5546772 5546773 + RETROSAT2LTRA 3112 0.0048 (7/1469) -1 * Os_TE_779679 Os_TE_779679 Chr1 5546768 5546767 - RETROSAT3_LTR 11537 0.0065 (10/1550) -1 * Os_TE_779680 Os_TE_779655 Chr1 5536647 5536648 + SZ-55_LTR 10318 0.0003 (1/2972) 0 * Os_TE_779654 Os_TE_779654 Chr1 5536643 5536642 - SZ-55_LTR 10318 0.0003 (1/2954) 0 * Os_TE_779655 Os_TE_779651 Chr1 5535215 5535214 + ORSiTERTOOT00226 792 0.0003 (1/2985) 0 * * Os_TE_779641 Chr1 5532899 5532900 + OLO24 345 0.6067 (1803/2972) 0 * * Os_TE_779636 Chr1 5528866 5528628 + ORSgTEMT01602181 239 0.0828 (245/2959) 1 Intact Os_TE_779635 Os_TE_779635 Chr1 5528628 5528866 - ORSgTEMT01601432 239 0.0827 (244/2949) 1 Intact Os_TE_779636 Os_TE_779630 Chr1 5526122 5526123 - INDITTO 263 0.0007 (2/2992) 0 * * Os_TE_779627 Chr1 5525107 5525108 - COPIA2-LTR_OS 6433 0.3305 (983/2974) 0 * Os_TE_779626 Os_TE_779626 Chr1 5525103 5525102 + COPIA2-LTR_OS 6433 0.3279 (970/2958) 0 * Os_TE_779627 Os_TE_779575 Chr1 5503265 5503266 + TELIA 141 0.0017 (5/2985) 0 * Os_TE_779574 Os_TE_779574 Chr1 5503257 5503256 - TELIA 141 0.0017 (5/2986) 0 * Os_TE_779575 Os_TE_779488 Chr1 5461935 5463278 - CACTA-M 1129 0.0828 (240/2897) 1 Intact * Os_TE_779470 Chr1 5454404 5454405 - COPIA2-LTR_OS 6433 0.0010 (3/2960) 0 * Os_TE_779469 Os_TE_779469 Chr1 5454400 5454399 + COPIA2-LTR_OS 6433 0.0010 (3/2965) 0 * Os_TE_779470 Os_TE_779441 Chr1 5446393 5446394 + INDITTO 263 0.0027 (8/2985) 0 * Os_TE_779440 Os_TE_779440 Chr1 5446391 5446390 - INDITTO 263 0.0023 (7/2982) 0 * Os_TE_779441 Os_TE_779433 Chr1 5439417 5439416 + OSTE20 496 0.2429 (722/2972) 0 * * Os_TE_779413 Chr1 5422440 5422439 + TREP219 104 0.0003 (1/2966) 0 * * Os_TE_779390 Chr1 5408982 5408983 + ORSiTERTOOT00296 5553 0.0010 (3/2966) 0 * Os_TE_779389 Os_TE_779389 Chr1 5408978 5408977 - SC-3_LTR 5748 0.0007 (2/2972) 0 * Os_TE_779390 Os_TE_779362 Chr1 5399575 5399576 + MuDR2_OS 6770 0.2814 (840/2985) 0 * Os_TE_779361 Os_TE_779361 Chr1 5399566 5399565 - MuDR2_OS 6770 0.2591 (758/2925) 0 * Os_TE_779362 Os_TE_779355 Chr1 5397227 5397228 - ORSiTEMT01000008 242 0.5554 (1214/2186) 0 * * Os_TE_779349 Chr1 5396183 5396184 - INDITTO 263 0.2622 (784/2990) 0 * Os_TE_779348 Os_TE_779348 Chr1 5396181 5396180 - ORSgTETNOOT00053 263 0.2614 (783/2995) 0 * Os_TE_779349 Os_TE_779346 Chr1 5395458 5395459 + AMYLTP 383 0.3982 (1178/2958) 0 * Os_TE_779345 Os_TE_779345 Chr1 5395450 5395449 - AMYLTP 383 0.3998 (1185/2964) 0 * Os_TE_779346 Os_TE_779327 Chr1 5388452 5388451 + ORSiTERTOOT00226 792 0.0019 (5/2647) 0 * Os_TE_779326 Os_TE_779326 Chr1 5388426 5388427 - SZ-22_LTR 4403 0.0011 (2/1846) 0 * Os_TE_779327 Os_TE_779325 Chr1 5388404 5386520 + OSTE15 1168 0.0772 (196/2540) 1 Intact Os_TE_779322 Os_TE_779322 Chr1 5386518 5388400 + OSTE15 1168 0.0689 (201/2917) 1 Intact Os_TE_779325 Os_TE_779314 Chr1 5384853 5384854 - COPIA2-LTR_OS 6433 0.0011 (3/2788) 0 * Os_TE_779313 Os_TE_779313 Chr1 5384849 5384848 + COPIA2-LTR_OS 6433 0.0011 (3/2738) 0 * Os_TE_779314 Os_TE_779283 Chr1 5375945 5375946 + RIREX_LTR 8828 0.0399 (116/2907) 0 * Os_TE_779282 Os_TE_779282 Chr1 5375941 5375940 - RIREX_LTR 8828 0.0388 (113/2913) 0 * Os_TE_779283 Os_TE_779265 Chr1 5369392 5369391 - COPIA2-LTR_OS 6433 0.0004 (1/2825) 0 * * Os_TE_779261 Chr1 5368326 5368327 + ORSgTETNOOT00032 218 0.0017 (5/2981) 0 * * Os_TE_779243 Chr1 5366011 5366349 + ORSgTEMT00100531 325 0.3275 (973/2971) 1 Intact * Os_TE_779233 Chr1 5361121 5361122 - CASLET 354 0.1242 (372/2995) 0 * * Os_TE_779230 Chr1 5360698 5360699 + COPI2_LTR 4733 0.0003 (1/2990) 0 * Os_TE_779229 Os_TE_779229 Chr1 5360694 5360693 - COPI2_LTR 4733 0.0003 (1/2988) 0 * Os_TE_779230 Os_TE_779226 Chr1 5358489 5358135 - CASLET 354 0.3294 (981/2978) 1 Intact Os_TE_779224 Os_TE_779224 Chr1 5358135 5358489 + CASLET 354 0.3272 (973/2974) 1 Intact Os_TE_779226 Os_TE_779219 Chr1 5356145 5356146 - TYPEM 227 0.0007 (2/2966) 0 * * Os_TE_779192 Chr1 5344045 5344046 + ORSgTETNOOT02406 265 0.2208 (657/2976) 0 * Os_TE_779191 Os_TE_779191 Chr1 5344043 5344042 + ORSgTETNOOT02316 263 0.2264 (677/2990) 0 * Os_TE_779192 Os_TE_779178 Chr1 5335613 5335614 + MPING 430 0.0014 (4/2929) 0 * Os_TE_779177 Os_TE_779177 Chr1 5335611 5335610 - MPING 430 0.0017 (5/2908) 0 * Os_TE_779178 Os_TE_779165 Chr1 5327942 5327797 - ORSgTEMT00502122 149 0.3550 (961/2707) 1 Intact * Os_TE_779154 Chr1 5326871 5326872 + RETRO2_LTR 12874 0.6712 (1684/2509) 0 * * Os_TE_779131 Chr1 5322101 5322102 - RIREX_LTR 8828 0.0003 (1/2990) 0 * Os_TE_779130 Os_TE_779130 Chr1 5322097 5322096 + RIREX_LTR 8828 0.0003 (1/2993) 0 * Os_TE_779131 Os_TE_779129 Chr1 5322087 5322088 - SC-8_LTR 4951 0.0003 (1/2991) 0 * Os_TE_779128 Os_TE_779128 Chr1 5322083 5322082 + SC-8_LTR 4951 0.0003 (1/2988) 0 * Os_TE_779129 Os_TE_779125 Chr1 5320951 5320952 - SC-8_LTR 4951 0.0003 (1/2992) 0 * * Os_TE_779111 Chr1 5313773 5313772 + Mudr5_OS 5952 0.0003 (1/2968) 0 * * Os_TE_779110 Chr1 5313026 5313027 - SC-8_LTR 4951 0.0003 (1/2972) 0 * Os_TE_779109 Os_TE_779109 Chr1 5313022 5313021 + SC-8_LTR 4951 0.0007 (2/2972) 0 * Os_TE_779110 Os_TE_779108 Chr1 5311726 5311727 + COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_779107 Os_TE_779107 Chr1 5311722 5311721 - COPI2_LTR 4733 0.0003 (1/2996) 0 * Os_TE_779108 Os_TE_779106 Chr1 5309189 5309188 + ORSgTEMT01701224 156 0.0003 (1/2948) 0 * * Os_TE_779055 Chr1 5301449 5301450 + CASLET 354 0.6819 (2032/2980) 0 * Os_TE_779054 Os_TE_779054 Chr1 5301447 5301446 - CASLET 354 0.6856 (2052/2993) 0 * Os_TE_779055 Os_TE_779045 Chr1 5296025 5296026 + ORSiTERTOOT00296 5553 0.0007 (2/2973) 0 * * Os_TE_779039 Chr1 5294323 5294324 - SC-3_LTR 5748 0.0003 (1/2981) 0 * Os_TE_779038 Os_TE_779038 Chr1 5294319 5294318 + ORSiTERTOOT00296 5553 0.0003 (1/2979) 0 * Os_TE_779039 Os_TE_779036 Chr1 5293379 5293380 + ORSiTERTOOT00296 5553 0.0040 (12/2967) 0 * Os_TE_779035 Os_TE_779035 Chr1 5293375 5293374 - SC-3_LTR 5748 0.0037 (11/2947) 0 * Os_TE_779036 Os_TE_779033 Chr1 5293353 5293352 - SC-3_LTR 5748 0.0003 (1/2970) 0 * * Os_TE_779031 Chr1 5293047 5293048 + SC-8_LTR 4951 0.0003 (1/2985) 0 * * Os_TE_779026 Chr1 5288652 5288651 - SC-8_LTR 4951 0.0003 (1/2996) 0 * * Os_TE_779005 Chr1 5285655 5282152 + RETROSAT2LTR 12796 0.3206 (957/2985) 1 Solo_LTR Os_TE_778999 Os_TE_778999 Chr1 5282150 5285655 - RETROSAT2LTR 12796 0.3206 (958/2988) 1 Solo_LTR Os_TE_779005 Os_TE_778994 Chr1 5280355 5280354 + STOWAWAY51_OS 246 0.0007 (2/2958) 0 * Os_TE_778993 Os_TE_778993 Chr1 5280349 5280350 - STOWAWAY51_OS 246 0.0007 (2/2937) 0 * Os_TE_778994 Os_TE_778983 Chr1 5274181 5273836 - NDNA2TNA_OS 346 0.7503 (2220/2959) 1 Intact * Os_TE_778966 Chr1 5267825 5267824 + ORSgTEMT02400034 225 0.1273 (342/2687) 0 * Os_TE_778965 Os_TE_778965 Chr1 5267820 5267821 - ORSgTEMT02400246 177 0.1295 (350/2703) 0 * Os_TE_778966 Os_TE_778905 Chr1 5244618 5244617 - SZ-62LTR 3649 0.0003 (1/2950) 0 * * Os_TE_778901 Chr1 5242915 5242914 - STOWAWAY51_OS 246 0.0003 (1/2999) 0 * * Os_TE_778839 Chr1 5210229 5210230 - SC-3_LTR 5748 0.0007 (2/2992) 0 * Os_TE_778838 Os_TE_778838 Chr1 5210225 5210224 + ORSiTERTOOT00296 5553 0.0007 (2/2993) 0 * Os_TE_778839 Os_TE_778804 Chr1 5195033 5195034 - RIRE3A_LTR 10580 0.0010 (3/2940) 0 * * Os_TE_778775 Chr1 5173745 5173744 - XIKE 594 0.0019 (5/2584) 0 * * Os_TE_778731 Chr1 5161246 5161247 - STOWAWAY11_OS 292 0.0022 (6/2751) 0 * Os_TE_778730 Os_TE_778730 Chr1 5161245 5161244 + STOWAWAY11_OS 292 0.0018 (5/2757) 0 * Os_TE_778731 Os_TE_778728 Chr1 5160659 5160660 - RIREX_LTR 8828 0.0004 (1/2740) 0 * Os_TE_778727 Os_TE_778727 Chr1 5160655 5160654 + RIREX_LTR 8828 0.0004 (1/2738) 0 * Os_TE_778728 Os_TE_778723 Chr1 5158976 5158977 - COPI2_LTR 4733 0.0027 (7/2601) 0 * Os_TE_778722 Os_TE_778722 Chr1 5158972 5158971 + COPI2_LTR 4733 0.0019 (5/2603) 0 * Os_TE_778723 Os_TE_778706 Chr1 5153520 5153521 + ORSgTEMT01602158 232 0.0017 (5/2970) 0 * * Os_TE_778689 Chr1 5151213 5151214 - RETRO2_LTR 12874 0.7301 (2004/2745) 0 * Os_TE_778688 Os_TE_778688 Chr1 5151209 5151208 + RETRO2_LTR 12874 0.7266 (1980/2725) 0 * Os_TE_778689 Os_TE_778681 Chr1 5148451 5148452 - YOUREN 286 0.0827 (245/2963) 0 * Os_TE_778680 Os_TE_778680 Chr1 5148449 5148448 + YOUREN 286 0.0844 (250/2961) 0 * Os_TE_778681 Os_TE_778675 Chr1 5147625 5147626 + TRUNCATOR2_LTR 2904 0.0004 (1/2709) 0 * * Os_TE_778666 Chr1 5145989 5145990 - ORSgTEMT01601493 303 0.0003 (1/2888) 0 * * Os_TE_778664 Chr1 5145646 5145647 - STOWAWAY46_OS 154 0.0860 (252/2930) 0 * * Os_TE_778663 Chr1 5145274 5145275 + HARB-1_OS 5166 0.0003 (1/2939) 0 * Os_TE_778662 Os_TE_778662 Chr1 5145272 5145271 - HARB-1_OS 5166 0.0003 (1/2937) 0 * Os_TE_778663 Os_TE_778661 Chr1 5145165 5145166 + STOWAWAY51_OS 246 0.0914 (266/2910) 0 * * Os_TE_778658 Chr1 5144991 5144990 - ORSgTEMT01400010 213 0.7043 (1822/2587) 0 * * Os_TE_778650 Chr1 5143235 5143236 + ORSgTEMT01400032 215 0.7403 (2098/2834) 0 * * Os_TE_778647 Chr1 5142128 5142613 - TEOS1 476 0.2540 (751/2957) 1 Intact * Os_TE_778646 Chr1 5141547 5141546 - ORSgTEMT01602413 239 0.7497 (2219/2960) 0 * Os_TE_778645 Os_TE_778645 Chr1 5141544 5141545 - ORSgTEMT01602413 239 0.7242 (1969/2719) 0 * Os_TE_778646 Os_TE_778612 Chr1 5129216 5129215 + TWIFB1 3737 0.0003 (1/2877) 0 * * Os_TE_778611 Chr1 5129182 5129183 - TYPEM 227 0.0104 (30/2893) 0 * Os_TE_778610 Os_TE_778610 Chr1 5129181 5129180 - ORSgTEMT02400179 221 0.0114 (33/2893) 0 * Os_TE_778611 Os_TE_778575 Chr1 5120611 5120612 + INDITTO 263 0.0003 (1/2979) 0 * * Os_TE_778570 Chr1 5116445 5116444 + BUHUI 375 0.0003 (1/2988) 0 * * Os_TE_778561 Chr1 5110294 5110295 + HELITRON2_OS 15167 0.0010 (3/2993) 0 * * Os_TE_778546 Chr1 5105478 5105477 + CACTA-B 1103 0.2144 (618/2882) 0 * Os_TE_778545 Os_TE_778545 Chr1 5105476 5105477 - ORSgTETN00200001 10994 0.2405 (712/2961) 0 * Os_TE_778546 Os_TE_778528 Chr1 5098644 5098645 - TELIA 141 0.0007 (2/2994) 0 * Os_TE_778527 Os_TE_778527 Chr1 5098636 5098635 + TELIA 141 0.0007 (2/2994) 0 * Os_TE_778528 Os_TE_778517 Chr1 5095104 5095103 + ORSgTEMT01601591 242 0.0003 (1/2990) 0 * * Os_TE_778514 Chr1 5091836 5091837 + COPI2_LTR 4733 0.0017 (5/2990) 0 * * Os_TE_778490 Chr1 5085690 5085691 + HARB-1_OS 5166 0.0003 (1/2978) 0 * Os_TE_778489 Os_TE_778489 Chr1 5085688 5085687 - HARB-1_OS 5166 0.0003 (1/2973) 0 * Os_TE_778490 Os_TE_778412 Chr1 5065453 5065454 + RIREX_LTR 8828 0.0436 (130/2981) 0 * Os_TE_778411 Os_TE_778411 Chr1 5065449 5065448 - RIREX_LTR 8828 0.0426 (127/2984) 0 * Os_TE_778412 Os_TE_778405 Chr1 5059657 5059658 + OSTE33 1012 0.1209 (361/2986) 0 * Os_TE_778404 Os_TE_778404 Chr1 5059648 5059647 + OSTE33 1012 0.1200 (359/2991) 0 * Os_TE_778405 Os_TE_778402 Chr1 5058926 5058925 + STOWAWAY51_OS 246 0.0013 (4/2973) 0 * Os_TE_778401 Os_TE_778401 Chr1 5058920 5058921 - STOWAWAY51_OS 246 0.0014 (4/2934) 0 * Os_TE_778402 Os_TE_778400 Chr1 5058874 5058640 + ORSgTETNOOT00908 242 0.3453 (1031/2986) 1 Intact Os_TE_778399 Os_TE_778399 Chr1 5058640 5058870 + ORSgTETNOOT01219 231 0.3461 (1031/2979) 1 Intact Os_TE_778400 Os_TE_778384 Chr1 5052378 5052377 + STOWAWAY51_OS 246 0.0003 (1/2995) 0 * Os_TE_778383 Os_TE_778383 Chr1 5052372 5052373 + ORSgTEMT01601591 242 0.0003 (1/2990) 0 * Os_TE_778384 Os_TE_778377 Chr1 5051247 5051593 - NDNA2TNA_OS 346 0.3006 (890/2961) 1 Intact * Os_TE_778341 Chr1 5033573 5033574 + SC-8_LTR 4951 0.0003 (1/2984) 0 * Os_TE_778340 Os_TE_778340 Chr1 5033569 5033568 - SC-8_LTR 4951 0.0003 (1/2983) 0 * Os_TE_778341 Os_TE_778337 Chr1 5032406 5032407 + ORSiTERTOOT00296 5553 0.0003 (1/2991) 0 * Os_TE_778336 Os_TE_778336 Chr1 5032402 5032401 - SC-3_LTR 5748 0.0003 (1/2990) 0 * Os_TE_778337 Os_TE_778319 Chr1 5023974 5023975 - SC-8_LTR 4951 0.0003 (1/2977) 0 * Os_TE_778318 Os_TE_778318 Chr1 5023970 5023969 + SC-8_LTR 4951 0.0003 (1/2979) 0 * Os_TE_778319 Os_TE_778242 Chr1 4993238 4993239 - RIREX_LTR 8828 0.0020 (6/2988) 0 * Os_TE_778241 Os_TE_778241 Chr1 4993234 4993233 + RIREX_LTR 8828 0.0020 (6/2984) 0 * Os_TE_778242 Os_TE_778239 Chr1 4992483 4992484 + COPIA2-LTR_OS 6433 0.0003 (1/2896) 0 * Os_TE_778238 Os_TE_778238 Chr1 4992479 4992478 - COPIA2-LTR_OS 6433 0.0003 (1/2910) 0 * Os_TE_778239 Os_TE_778207 Chr1 4973908 4973909 + MERMITEB 1610 0.0003 (1/2990) 0 * * Os_TE_778205 Chr1 4971513 4971512 - COPI2_LTR 4733 0.0003 (1/2994) 0 * * Os_TE_778203 Chr1 4970605 4970606 - MuDR4_OS 7610 0.3603 (1051/2917) 0 * Os_TE_778202 Os_TE_778202 Chr1 4970598 4970597 - MuDR4_OS 7610 0.3768 (1123/2980) 0 * Os_TE_778203 Os_TE_778192 Chr1 4967993 4967994 - ORSgTETN00200001 10994 0.4840 (1404/2901) 0 * Os_TE_778191 Os_TE_778191 Chr1 4967991 4967990 + SPMLIKE 10989 0.5018 (1494/2977) 0 * Os_TE_778192 Os_TE_778163 Chr1 4959163 4959162 + ORSgTEMT01400031 216 0.0013 (4/2983) 0 * * Os_TE_778161 Chr1 4958319 4958318 - COPIA2-LTR_OS 6433 0.0003 (1/2970) 0 * * Os_TE_778158 Chr1 4957070 4957071 + ORSgTETNOOT00908 242 0.0003 (1/2992) 0 * * Os_TE_778157 Chr1 4956527 4956528 + ORSgTEMT01600222 242 0.0004 (1/2677) 0 * * Os_TE_778155 Chr1 4955044 4955045 + MPING 430 0.0003 (1/2932) 0 * Os_TE_778154 Os_TE_778154 Chr1 4955042 4955041 - MPING 430 0.0003 (1/2937) 0 * Os_TE_778155 Os_TE_778118 Chr1 4946739 4946738 - ORSgTEMT00101341 314 0.0007 (2/2959) 0 * Os_TE_778117 Os_TE_778117 Chr1 4946731 4946732 + NDNA1TNA_OS 334 0.0008 (2/2437) 0 * Os_TE_778118 Os_TE_778111 Chr1 4943708 4943709 - ORSgTETN00200001 10994 0.3941 (1171/2971) 0 * Os_TE_778110 Os_TE_778110 Chr1 4943706 4943705 + SPMLIKE 10989 0.2922 (763/2611) 0 * Os_TE_778111 Os_TE_778108 Chr1 4943357 4943356 - INDITTO 263 0.0003 (1/2990) 0 * * Os_TE_778096 Chr1 4932009 4943298 - ORSgTERT00201216 11284 0.1005 (300/2985) 1 Intact * Os_TE_778031 Chr1 4917179 4917180 - TYPEM 227 0.0007 (2/2990) 0 * * Os_TE_777999 Chr1 4900393 4900392 - COPI2_LTR 4733 0.0003 (1/2987) 0 * * Os_TE_777992 Chr1 4899328 4899327 - TELIA 141 0.0004 (1/2751) 0 * * Os_TE_777984 Chr1 4889212 4889211 + NDNA1TNA_OS 334 0.5040 (1506/2988) 0 * Os_TE_777983 Os_TE_777983 Chr1 4889207 4889208 + ORSgTEMT00100531 325 0.5062 (1516/2995) 0 * Os_TE_777984 Os_TE_777958 Chr1 4877096 4877097 + ORSgTETNOOT00908 242 0.5066 (1465/2892) 0 * Os_TE_777957 Os_TE_777957 Chr1 4877095 4877094 + ORSgTETNOOT01219 231 0.4890 (1376/2814) 0 * Os_TE_777958 Os_TE_777949 Chr1 4875900 4875901 + COPI2_LTR 4733 0.0007 (2/2986) 0 * Os_TE_777948 Os_TE_777948 Chr1 4875896 4875895 - COPI2_LTR 4733 0.0007 (2/2988) 0 * Os_TE_777949 Os_TE_777904 Chr1 4836394 4836393 + ORSiTERT00400054 425 0.8237 (2449/2973) 0.6 * * Os_TE_777886 Chr1 4833640 4833641 + ORSgTEMT00700017 386 0.0003 (1/2995) 0 * * Os_TE_777855 Chr1 4826379 4826380 - INDITTO 263 0.0007 (2/2934) 0 * Os_TE_777854 Os_TE_777854 Chr1 4826377 4826376 + INDITTO 263 0.0007 (2/2929) 0 * Os_TE_777855 Os_TE_777848 Chr1 4825517 4825518 + ORSgTEMT00600272 361 0.0160 (48/2994) 0 * Os_TE_777847 Os_TE_777847 Chr1 4825513 4825512 + ORSgTEMT00600376 329 0.0157 (47/2988) 0 * Os_TE_777848 Os_TE_777839 Chr1 4823617 4823616 + ORSgTEMT00901844 250 0.0054 (16/2960) 0 * Os_TE_777838 Os_TE_777838 Chr1 4823613 4823614 - ORSgTEMT00900760 239 0.0054 (16/2961) 0 * Os_TE_777839 Os_TE_777833 Chr1 4817743 4817744 - COPI2_LTR 4733 0.0003 (1/2983) 0 * * Os_TE_777829 Chr1 4816648 4816647 - TREP219 104 0.0187 (17/911) 0 * * Os_TE_777825 Chr1 4816384 4816619 + ORSgTEMT00901138 254 0.5329 (867/1627) 1 Intact * Os_TE_777823 Chr1 4816196 4816197 + CASTAWAY-3 314 0.0011 (2/1783) 0 * * Os_TE_777821 Chr1 4816114 4815975 + ORSgTEMT00502094 140 0.4820 (857/1778) 1 Intact Os_TE_777820 Os_TE_777820 Chr1 4815972 4816111 - ORSgTETNOOT01930 140 0.4922 (885/1798) 1 Intact Os_TE_777821 Os_TE_777819 Chr1 4815849 4815718 + ORSgTEMT00502171 134 0.2959 (881/2977) 1 Intact Os_TE_777817 Os_TE_777817 Chr1 4815709 4815846 + ORSgTEMT00500201 140 0.2895 (858/2964) 1 Intact Os_TE_777819 Os_TE_777814 Chr1 4814954 4815105 + F1275 157 0.3061 (861/2813) 1 Intact * Os_TE_777813 Chr1 4814202 4813488 + BAJIELTR 4500 0.4911 (886/1804) 1 Solo_LTR * Os_TE_777803 Chr1 4813193 4813194 - ORSgTEMT00501334 156 0.7158 (2143/2994) 0 * * Os_TE_777801 Chr1 4812751 4812752 + DITTO 244 0.7128 (2112/2963) 0 * * Os_TE_777794 Chr1 4812417 4812416 + NDNA1TNA_OS 334 0.0068 (20/2952) 0 * * Os_TE_777785 Chr1 4809564 4807729 + MERMITEB 1610 0.2850 (835/2930) 1 Intact Os_TE_777781 Os_TE_777781 Chr1 4807726 4809564 + MERMITEB 1610 0.2838 (834/2939) 1 Intact Os_TE_777785 Os_TE_777777 Chr1 4806917 4806672 - ORSgTEMT01400019 216 0.2978 (833/2797) 1 Intact Os_TE_777774 Os_TE_777774 Chr1 4806666 4806875 - ORSgTEMT01400014 209 0.4442 (856/1927) 1 Intact Os_TE_777777 Os_TE_777765 Chr1 4804672 4804539 - ORSgTETNOOT00118 134 0.2932 (878/2995) 1 Intact Os_TE_777762 Os_TE_777762 Chr1 4804530 4804669 + ORSgTEMT00500201 140 0.2914 (871/2989) 1 Intact Os_TE_777765 Os_TE_777759 Chr1 4804171 4803938 + STOWAWAY44_OS 240 0.6886 (2061/2993) 1 Intact * Os_TE_777757 Chr1 4803933 4804171 - STOWAWAY44_OS 240 0.2951 (874/2962) 1 Intact * Os_TE_777756 Chr1 4803591 4803592 - MPING 430 0.0003 (1/2992) 0 * Os_TE_777755 Os_TE_777755 Chr1 4803589 4803588 + MPING 430 0.0003 (1/2992) 0 * Os_TE_777756 Os_TE_777749 Chr1 4801061 4801062 + STOWAWAY1_OS 149 0.0452 (135/2990) 0 * * Os_TE_777741 Chr1 4799151 4799152 - RETROSAT2LTRA 3112 0.0074 (21/2821) 0 * * Os_TE_777736 Chr1 4794198 4794199 - ORSiTERTOOT00441 4741 0.0010 (3/2975) 0 * * Os_TE_777705 Chr1 4781940 4776239 + ORSiTERTOOT00296 5553 0.0628 (188/2993) 1 Intact Os_TE_777703 Os_TE_777703 Chr1 4776239 4781709 - SC-3_LTR 5748 0.0625 (187/2993) 1 Intact Os_TE_777705 Os_TE_777694 Chr1 4772230 4772231 + ORSiTERTOOT00296 5553 0.0007 (2/2980) 0 * * Os_TE_777690 Chr1 4768484 4768483 + MPING 430 0.0003 (1/2982) 0 * * Os_TE_777680 Chr1 4761567 4761568 - TELIA 141 0.0007 (2/2988) 0 * Os_TE_777679 Os_TE_777679 Chr1 4761562 4761561 + TELIA 141 0.0007 (2/2989) 0 * Os_TE_777680 Os_TE_777677 Chr1 4759592 4759593 + MuDR2_OS 6770 0.0007 (2/2981) 0 * Os_TE_777676 Os_TE_777676 Chr1 4759583 4759582 - MuDR2_OS 6770 0.0003 (1/2980) 0 * Os_TE_777677 Os_TE_777674 Chr1 4758762 4758761 - COPI2_LTR 4733 0.0010 (3/2926) 0 * * Os_TE_777662 Chr1 4754690 4754689 + TRUNCATOR 2918 0.4492 (1341/2985) 0 * Os_TE_777661 Os_TE_777661 Chr1 4754689 4754690 - TRUNCATOR 2918 0.4387 (1295/2952) 0 * Os_TE_777662 Os_TE_777645 Chr1 4746988 4746989 - COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * Os_TE_777644 Os_TE_777644 Chr1 4746984 4746983 + COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * Os_TE_777645 Os_TE_777607 Chr1 4720340 4720341 + HARB-1_OS 5166 0.0013 (4/2966) 0 * * Os_TE_777595 Chr1 4716092 4716093 - COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_777594 Os_TE_777594 Chr1 4716088 4716087 + COPIA2-LTR_OS 6433 0.0003 (1/2992) 0 * Os_TE_777595 Os_TE_777589 Chr1 4710866 4710867 - ORSgTEMT02900151 307 0.0003 (1/2932) 0 * * Os_TE_777567 Chr1 4706795 4706796 + INDITTO 263 0.0003 (1/2962) 0 * Os_TE_777566 Os_TE_777566 Chr1 4706793 4706792 - INDITTO 263 0.0007 (2/2958) 0 * Os_TE_777567 Os_TE_777559 Chr1 4703683 4703684 + CACTA-G1 797 0.0017 (5/2934) 0 * Os_TE_777558 Os_TE_777558 Chr1 4703681 4703680 - CACTA-G1 797 0.0017 (5/2919) 0 * Os_TE_777559 Os_TE_777555 Chr1 4701392 4701391 + ORSgTEMT01601122 212 0.0020 (6/2981) 0 * Os_TE_777554 Os_TE_777554 Chr1 4701389 4701390 + ORSgTEMT01601122 212 0.0017 (5/2975) 0 * Os_TE_777555 Os_TE_777551 Chr1 4700262 4700263 - CLOUD 734 0.0694 (207/2982) 0 * * Os_TE_777511 Chr1 4686846 4686847 + CLOUD-7 495 0.0091 (24/2642) 0 * Os_TE_777510 Os_TE_777510 Chr1 4686839 4686838 - CLOUD-4 520 0.0091 (24/2638) 0 * Os_TE_777511 Os_TE_777475 Chr1 4668001 4667737 + INDITTO 263 0.2852 (850/2980) 1 Intact Os_TE_777474 Os_TE_777474 Chr1 4667737 4668001 - INDITTO 263 0.2820 (839/2975) 1 Intact Os_TE_777475 Os_TE_777472 Chr1 4666211 4666212 + ORSiTERTOOT00296 5553 0.0003 (1/2992) 0 * Os_TE_777471 Os_TE_777471 Chr1 4666207 4666206 - SC-3_LTR 5748 0.0003 (1/2959) 0 * Os_TE_777472 Os_TE_777461 Chr1 4662662 4662663 + COPI2_LTR 4733 0.0024 (7/2973) 0 * * Os_TE_777417 Chr1 4645052 4638958 + OSTONOR1_LTR 6440 0.0195 (58/2968) 1 Intact Os_TE_777416 Os_TE_777416 Chr1 4638958 4645052 - ORSiTERT00100062 5674 0.0192 (57/2975) 1 Intact Os_TE_777417 Os_TE_777415 Chr1 4638903 4638902 - RIREX_LTR 8828 0.0007 (2/2936) 0 * * Os_TE_777414 Chr1 4638813 4638814 + MPING 430 0.0010 (3/2973) 0 * Os_TE_777413 Os_TE_777413 Chr1 4638811 4638810 - MPING 430 0.0007 (2/2975) 0 * Os_TE_777414 Os_TE_777397 Chr1 4635473 4635472 - NDNA1TNA_OS 334 0.0814 (243/2985) 0 * * Os_TE_777395 Chr1 4634416 4634417 + TWIFB1 3737 0.0743 (220/2959) 0 * * Os_TE_777381 Chr1 4623787 4623788 + SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_777380 Os_TE_777380 Chr1 4623783 4623782 - SC-8_LTR 4951 0.0003 (1/2990) 0 * Os_TE_777381 Os_TE_777277 Chr1 4586094 4586095 + RIREX_LTR 8828 0.0089 (24/2693) 0 * Os_TE_777276 Os_TE_777276 Chr1 4586090 4586089 - RIREX_LTR 8828 0.0085 (23/2701) 0 * Os_TE_777277 Os_TE_777236 Chr1 4574974 4574975 - RIREX_LTR 8828 0.0376 (112/2978) 0 * Os_TE_777235 Os_TE_777235 Chr1 4574970 4574969 + RIREX_LTR 8828 0.0377 (112/2972) 0 * Os_TE_777236 Os_TE_777223 Chr1 4570470 4570471 + COPIA2-LTR_OS 6433 0.0012 (3/2486) 0 * Os_TE_777222 Os_TE_777222 Chr1 4570466 4570465 - COPIA2-LTR_OS 6433 0.0010 (3/2904) 0 * Os_TE_777223 Os_TE_777195 Chr1 4560485 4549586 + RIRE5-LTR_OS 6427 0.1393 (416/2987) 1 Intact Os_TE_777188 Os_TE_777188 Chr1 4549584 4560485 - RIRE5-LTR_OS 6427 0.1431 (428/2991) 1 Intact Os_TE_777195 Os_TE_777185 Chr1 4546058 4546059 - SZ-22_LTR 4403 0.0003 (1/2991) 0 * Os_TE_777184 Os_TE_777184 Chr1 4546054 4546053 + ORSiTERTOOT00226 792 0.0003 (1/2988) 0 * Os_TE_777185 Os_TE_777181 Chr1 4544138 4544139 + ORSgTETNOOT00908 242 0.1675 (502/2997) 0 * * Os_TE_777173 Chr1 4539629 4539630 + ORSiTERTOOT00296 5553 0.0003 (1/2996) 0 * * Os_TE_777101 Chr1 4503463 4503464 + SC-8_LTR 4951 0.0003 (1/2978) 0 * * Os_TE_777057 Chr1 4448690 4448438 - STOWAWAY51_OS 246 0.3063 (916/2991) 1 Intact * Os_TE_777046 Chr1 4442339 4442340 + RIRE2_LTR 11306 0.0003 (1/2992) 0 * * Os_TE_777037 Chr1 4434103 4434102 + TWIFB1 3737 0.0004 (1/2703) 0 * * Os_TE_777012 Chr1 4424567 4424568 - SC-3_LTR 5748 0.0505 (151/2988) 0 * Os_TE_777011 Os_TE_777011 Chr1 4424563 4424562 + ORSiTERTOOT00296 5553 0.0503 (150/2984) 0 * Os_TE_777012 Os_TE_776991 Chr1 4414824 4414825 + COPIA2-LTR_OS 6433 0.0237 (71/2990) 0 * Os_TE_776990 Os_TE_776990 Chr1 4414820 4414819 - COPIA2-LTR_OS 6433 0.0237 (71/2991) 0 * Os_TE_776991 Os_TE_776989 Chr1 4414426 4414427 - HARB-1_OS 5166 0.0007 (2/2994) 0 * Os_TE_776988 Os_TE_776988 Chr1 4414424 4414423 + HARB-1_OS 5166 0.0007 (2/2997) 0 * Os_TE_776989 Os_TE_776939 Chr1 4397675 4397676 + TWIF 586 0.0003 (1/2979) 0 * * Os_TE_776937 Chr1 4397502 4397503 - MuDR4_OS 7610 0.1736 (518/2984) 0 * * Os_TE_776928 Chr1 4379575 4379576 - SC-3_LTR 5748 0.0003 (1/2969) 0 * Os_TE_776927 Os_TE_776927 Chr1 4379571 4379570 + ORSiTERTOOT00296 5553 0.0003 (1/2973) 0 * Os_TE_776928 Os_TE_776924 Chr1 4378359 4378360 - SC-8_LTR 4951 0.0010 (3/2977) 0 * * Os_TE_776916 Chr1 4372554 4372553 + ORSgTEMT00501821 144 0.0003 (1/2916) 0 * * Os_TE_776845 Chr1 4348262 4348263 + ORSgTETNOOT01834 251 0.0020 (6/2986) 0 * Os_TE_776844 Os_TE_776844 Chr1 4348260 4348259 + ORSgTETNOOT01998 254 0.0020 (6/2986) 0 * Os_TE_776845 Os_TE_776827 Chr1 4340904 4340905 + MPING 430 0.0003 (1/2997) 0 * Os_TE_776826 Os_TE_776826 Chr1 4340902 4340901 - MPING 430 0.0003 (1/2997) 0 * Os_TE_776827 Os_TE_776825 Chr1 4340528 4340529 + HARB-1_OS 5166 0.0003 (1/2982) 0 * Os_TE_776824 Os_TE_776824 Chr1 4340526 4340525 - HARB-1_OS 5166 0.0003 (1/2985) 0 * Os_TE_776825 Os_TE_776813 Chr1 4334152 4334153 - SC-3_LTR 5748 0.0003 (1/2996) 0 * Os_TE_776812 Os_TE_776812 Chr1 4334148 4334147 + ORSiTERTOOT00296 5553 0.0003 (1/2993) 0 * Os_TE_776813 Os_TE_776797 Chr1 4320629 4320630 + RIREX_LTR 8828 0.0003 (1/2969) 0 * Os_TE_776796 Os_TE_776796 Chr1 4320625 4320624 - RIREX_LTR 8828 0.0003 (1/2982) 0 * Os_TE_776797 Os_TE_776791 Chr1 4316694 4316693 - STOWAWAY51_OS 246 0.0007 (2/2986) 0 * Os_TE_776790 Os_TE_776790 Chr1 4316688 4316689 + STOWAWAY51_OS 246 0.0007 (2/2977) 0 * Os_TE_776791 Os_TE_776785 Chr1 4312176 4312175 - F524 291 0.0003 (1/2987) 0 * * Os_TE_776780 Chr1 4310949 4310948 - SC-8_LTR 4951 0.0007 (2/2986) 0 * * Os_TE_776759 Chr1 4300490 4300491 - ORSiTERTOOT00301 9654 0.0018 (3/1692) 0 * * Os_TE_776758 Chr1 4300010 4300011 + RETRO1_LTR 8314 0.0701 (210/2994) 0 * Os_TE_776757 Os_TE_776757 Chr1 4300006 4300005 - RETRO2_LTR 12874 0.0691 (207/2994) 0 * Os_TE_776758 Os_TE_776753 Chr1 4299158 4299159 + NDNA1TNA_OS 334 0.0695 (208/2992) 0 * Os_TE_776752 Os_TE_776752 Chr1 4299156 4299155 - NDNA1TNA_OS 334 0.0695 (208/2993) 0 * Os_TE_776753 Os_TE_776735 Chr1 4289861 4289862 + OSTE33 1012 0.0020 (6/2994) 0 * Os_TE_776734 Os_TE_776734 Chr1 4289853 4289852 + OSTE33 1012 0.0020 (6/2997) 0 * Os_TE_776735 Os_TE_776732 Chr1 4289172 4289171 + COPI2_LTR 4733 0.0003 (1/2982) 0 * * Os_TE_776706 Chr1 4271453 4271452 + STOWAWAY44_OS 240 0.0003 (1/2940) 0 * * Os_TE_776667 Chr1 4251072 4251071 + ORSgTETNOOT00032 218 0.6247 (1858/2974) 0 * * Os_TE_776660 Chr1 4246680 4246681 - SC-3_LTR 5748 0.0003 (1/2991) 0 * Os_TE_776659 Os_TE_776659 Chr1 4246676 4246675 + ORSiTERTOOT00296 5553 0.0003 (1/2985) 0 * Os_TE_776660 Os_TE_776637 Chr1 4230608 4230609 - DITAILA 257 0.0014 (4/2957) 0 * * Os_TE_776630 Chr1 4230079 4230080 + MPING 430 0.0003 (1/2990) 0 * Os_TE_776629 Os_TE_776629 Chr1 4230077 4230076 - MPING 430 0.0003 (1/2982) 0 * Os_TE_776630 Os_TE_776623 Chr1 4226251 4226252 + HARB-1_OS 5166 0.0070 (21/2986) 0 * Os_TE_776622 Os_TE_776622 Chr1 4226249 4226248 - HARB-1_OS 5166 0.0067 (20/2974) 0 * Os_TE_776623 Os_TE_776610 Chr1 4222415 4222416 + MPING 430 0.0014 (4/2869) 0 * Os_TE_776609 Os_TE_776609 Chr1 4222413 4222412 - MPING 430 0.0014 (4/2894) 0 * Os_TE_776610 Os_TE_776596 Chr1 4219435 4219436 - MPING 430 0.0003 (1/2983) 0 * Os_TE_776595 Os_TE_776595 Chr1 4219433 4219432 + MPING 430 0.0003 (1/2986) 0 * Os_TE_776596 Os_TE_776594 Chr1 4218870 4218871 - OSMU5 4881 0.0003 (1/2952) 0 * * Os_TE_776592 Chr1 4218566 4218565 + ORSgTEMT01701591 154 0.0004 (1/2484) 0 * * Os_TE_776541 Chr1 4195196 4195437 + ORSgTETNOOT00908 242 0.2833 (801/2827) 1 Intact * Os_TE_776526 Chr1 4186325 4192651 - COPIA2-LTR_OS 6433 0.2849 (836/2934) 1 Intact * Os_TE_776515 Chr1 4184420 4184074 - NDNA2TNA_OS 346 0.2989 (814/2723) 1 Intact Os_TE_776512 Os_TE_776512 Chr1 4184073 4184421 - ORSgTEMT00100406 349 0.2847 (827/2905) 1 Intact Os_TE_776515 Os_TE_776511 Chr1 4183613 4183612 - STOWAWAY51_OS 246 0.0003 (1/2954) 0 * * Os_TE_776508 Chr1 4182370 4182371 + COPI2_LTR 4733 0.0658 (184/2798) 0 * Os_TE_776507 Os_TE_776507 Chr1 4182366 4182365 - COPI2_LTR 4733 0.0752 (212/2821) 0 * Os_TE_776508 Os_TE_776499 Chr1 4175575 4175576 + ORSgTEMT02000038 194 0.7316 (2189/2992) 0 * * Os_TE_776481 Chr1 4168226 4168227 - ORSgTEMT01601432 239 0.0003 (1/2966) 0 * * Os_TE_776457 Chr1 4157901 4157902 - COPI2_LTR 4733 0.0003 (1/2942) 0 * Os_TE_776456 Os_TE_776456 Chr1 4157897 4157896 + COPI2_LTR 4733 0.0003 (1/2954) 0 * Os_TE_776457 Os_TE_776422 Chr1 4130006 4130007 + ORSiTERTOOT00296 5553 0.0007 (2/2987) 0 * Os_TE_776421 Os_TE_776421 Chr1 4130002 4130001 - SC-3_LTR 5748 0.0007 (2/2980) 0 * Os_TE_776422 Os_TE_776393 Chr1 4117218 4117219 - CLOUD 734 0.0717 (214/2986) 0 * Os_TE_776392 Os_TE_776392 Chr1 4117209 4117208 - CLOUD 734 0.0722 (216/2992) 0 * Os_TE_776393 Os_TE_776386 Chr1 4113126 4113127 - MPING 430 0.0250 (75/2995) 0 * Os_TE_776385 Os_TE_776385 Chr1 4113124 4113123 + MPING 430 0.0250 (75/2995) 0 * Os_TE_776386 Os_TE_776384 Chr1 4113080 4113079 + STOWAWAY45_OS 266 0.0020 (6/2995) 0 * Os_TE_776383 Os_TE_776383 Chr1 4113077 4113078 - STOWAWAY45_OS 266 0.0020 (6/2998) 0 * Os_TE_776384 Os_TE_776378 Chr1 4106044 4106045 + ORSiTERTOOT00296 5553 0.1045 (312/2987) 0 * Os_TE_776377 Os_TE_776377 Chr1 4106040 4106039 - SC-3_LTR 5748 0.1057 (316/2989) 0 * Os_TE_776378 Os_TE_776366 Chr1 4099848 4099849 + ORSgTEMT00502094 140 0.0010 (3/2922) 0 * * Os_TE_776317 Chr1 4079472 4079471 + RIRE5-LTR_OS 6427 0.0010 (3/2990) 0 * * Os_TE_776315 Chr1 4078904 4078905 - COPIA2-LTR_OS 6433 0.0003 (1/2991) 0 * Os_TE_776314 Os_TE_776314 Chr1 4078900 4078899 + COPIA2-LTR_OS 6433 0.0003 (1/2989) 0 * Os_TE_776315 Os_TE_776311 Chr1 4078824 4078825 + ORSgTEMT00501629 149 0.0003 (1/2976) 0 * * Os_TE_776291 Chr1 4065144 4065143 + ORSgTETNOOT00012 241 0.0003 (1/2995) 0 * * Os_TE_776287 Chr1 4061800 4061801 - SC-3_LTR 5748 0.0137 (41/2991) 0 * Os_TE_776286 Os_TE_776286 Chr1 4061796 4061795 + ORSiTERTOOT00296 5553 0.0134 (40/2993) 0 * Os_TE_776287 Os_TE_776278 Chr1 4057587 4057588 + OSTE33 1012 0.0007 (2/2982) 0 * * Os_TE_776270 Chr1 4055828 4055829 - ORSgTEMT00600085 364 0.1009 (299/2964) 0 * * Os_TE_776232 Chr1 4045554 4045553 - STOWAWAY51_OS 246 0.0024 (7/2973) 0 * Os_TE_776231 Os_TE_776231 Chr1 4045548 4045549 + STOWAWAY51_OS 246 0.0024 (7/2978) 0 * Os_TE_776232 Os_TE_776124 Chr1 4000402 4000401 + TNR2A 152 0.5348 (1554/2906) 0 * * Os_TE_776123 Chr1 3998959 3998958 - STOWAWAY44_OS 240 0.0020 (6/2994) 0 * Os_TE_776122 Os_TE_776122 Chr1 3998956 3998957 + STOWAWAY44_OS 240 0.0020 (6/2995) 0 * Os_TE_776123 Os_TE_776119 Chr1 3998585 3998584 - ORSgTETNOOT01706 255 0.6591 (1972/2992) 0 * * Os_TE_776110 Chr1 3996841 3996842 + MERMITEJ 1498 0.0007 (2/2997) 0 * Os_TE_776109 Os_TE_776109 Chr1 3996833 3996832 + MERMITEJ 1498 0.0007 (2/2996) 0 * Os_TE_776110 Os_TE_776086 Chr1 3979943 3979944 - SC-3_LTR 5748 0.0462 (138/2987) 0 * * Os_TE_776082 Chr1 3975988 3975989 + ORSgTETNOOT01668 244 0.0020 (6/2981) 0 * * Os_TE_776079 Chr1 3975716 3975717 + MPING 430 0.0003 (1/2992) 0 * Os_TE_776078 Os_TE_776078 Chr1 3975714 3975713 - MPING 430 0.0003 (1/2990) 0 * Os_TE_776079 Os_TE_776076 Chr1 3975613 3975614 - RIREX_LTR 8828 0.2048 (613/2993) 0 * Os_TE_776075 Os_TE_776075 Chr1 3975609 3975608 + RIREX_LTR 8828 0.2024 (606/2994) 0 * Os_TE_776076 Os_TE_776070 Chr1 3973803 3973802 + RETRO2_LTR 12874 0.0022 (6/2784) 0 * * Os_TE_776061 Chr1 3972963 3972962 - RETROSAT3_LTR 11537 0.0296 (86/2901) 0 * * Os_TE_776060 Chr1 3972821 3972822 - RETROSAT5_LTR 13878 0.0381 (108/2832) 0 * Os_TE_776059 Os_TE_776059 Chr1 3972817 3972816 + SZ-67LTR 1540 0.0349 (99/2836) 0 * Os_TE_776060 Os_TE_776024 Chr1 3968130 3968131 - COPI2_LTR 4733 0.0011 (3/2811) 0 * * Os_TE_776013 Chr1 3966687 3966686 + TWIF 586 0.3008 (711/2364) 0 * * Os_TE_775997 Chr1 3955383 3955384 - TYPEM 227 0.5275 (1575/2986) 0 * * Os_TE_775964 Chr1 3943255 3943256 + ORSgTEMT00500373 144 0.0003 (1/2986) 0 * * Os_TE_775937 Chr1 3932062 3932063 + CRATA 4786 0.0023 (7/2982) 0 * * Os_TE_775922 Chr1 3925094 3925095 - COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_775921 Os_TE_775921 Chr1 3925090 3925089 + COPIA2-LTR_OS 6433 0.0003 (1/2993) 0 * Os_TE_775922 Os_TE_775918 Chr1 3923618 3923617 + STOWAWAY51_OS 246 0.0003 (1/2982) 0 * Os_TE_775917 Os_TE_775917 Chr1 3923612 3923613 + ORSgTEMT01601591 242 0.0003 (1/2984) 0 * Os_TE_775918 Os_TE_775908 Chr1 3919134 3919273 + ORSgTEMT00500201 140 0.3411 (1014/2973) 1 Intact * Os_TE_775894 Chr1 3917139 3916862 - SUSU 279 0.2735 (780/2852) 1 Intact Os_TE_775890 Os_TE_775890 Chr1 3916861 3917138 + ORSgTEMT05000092 279 0.2652 (779/2937) 1 Intact Os_TE_775894 Os_TE_775885 Chr1 3915660 3915659 + SC-4_LTR 5218 0.0087 (25/2867) 0 * * Os_TE_775884 Chr1 3913833 3913834 - ORSgTEMT01600507 239 0.0018 (5/2766) 0 * * Os_TE_775880 Chr1 3912675 3911942 - CLOUD 734 0.2639 (768/2910) 1 Intact Os_TE_775879 Os_TE_775879 Chr1 3911942 3912675 + CLOUD 734 0.2525 (728/2883) 1 Intact Os_TE_775880 Os_TE_775875 Chr1 3909463 3909464 - ORSgTEMT01700912 147 0.7507 (2222/2960) 0 * * Os_TE_775872 Chr1 3909072 3908834 - ORSgTEMT01602082 215 0.5251 (765/1457) 1 Intact * Os_TE_775868 Chr1 3907822 3902399 - ORSgTETN00200001 10994 0.2810 (710/2527) 1 Intact * Os_TE_775836 Chr1 3892774 3892528 - ORSgTEMT00901723 248 0.2660 (792/2978) 1 Intact * Os_TE_775833 Chr1 3892453 3892454 + DS-RICE4N 715 0.7260 (1940/2672) 0 * * Os_TE_775828 Chr1 3889189 3889190 - RETRO2_LTR 12874 0.0084 (8/953) 0 * Os_TE_775827 Os_TE_775827 Chr1 3889185 3889184 + RETRO2_LTR 12874 0.0101 (8/792) 0 * Os_TE_775828 Os_TE_775826 Chr1 3889008 3889007 - JINHUA 479 0.0074 (6/807) 0 * * Os_TE_775744 Chr1 3850595 3850831 - STOWAWAY21_OS 243 0.4530 (902/1991) 1 Intact * Os_TE_775743 Chr1 3850564 3850563 - ORSgTEMT00901723 248 0.5443 (1068/1962) 0 * * Os_TE_775741 Chr1 3850307 3850546 - STOWAWAY51_OS 246 0.2983 (858/2876) 1 Intact * Os_TE_775735 Chr1 3845677 3845676 - ORSiTEMT01100035 500 0.0052 (5/968) 0 * * Os_TE_775732 Chr1 3843530 3843531 + ORSiTERTOOT00296 5553 0.0003 (1/2988) 0 * Os_TE_775731 Os_TE_775731 Chr1 3843526 3843525 - SC-3_LTR 5748 0.0003 (1/2972) 0 * Os_TE_775732 Os_TE_775728 Chr1 3840856 3840857 - SC-3_LTR 5748 0.0395 (118/2988) 0 * * Os_TE_775726 Chr1 3839392 3839393 - CASTAWAY 364 0.6938 (2073/2988) 0 * Os_TE_775725 Os_TE_775725 Chr1 3839390 3839389 + ORSgTEMT00600287 363 0.6855 (2018/2944) 0 * Os_TE_775726 Os_TE_775724 Chr1 3838102 3837713 - TYPEU1 380 0.2579 (772/2993) 1 Intact Os_TE_775722 Os_TE_775722 Chr1 3837713 3838102 + TYPEU4 402 0.2589 (776/2997) 1 Intact Os_TE_775724 Os_TE_775713 Chr1 3832934 3832933 - SEVERIN-2 1952 0.0017 (5/2994) 0 * * Os_TE_775710 Chr1 3832552 3832553 - F524 291 0.6924 (2051/2962) 0 * * Os_TE_775695 Chr1 3821066 3821067 + SC-8_LTR 4951 0.0003 (1/2974) 0 * Os_TE_775694 Os_TE_775694 Chr1 3821062 3821061 - SC-8_LTR 4951 0.0003 (1/2986) 0 * Os_TE_775695 Os_TE_775691 Chr1 3817579 3817578 + ORSgTEMT01701258 154 0.6993 (2084/2980) 0 * Os_TE_775690 Os_TE_775690 Chr1 3817576 3817577 + ORSgTEMT01701591 154 0.5899 (1335/2263) 0 * Os_TE_775691 Os_TE_775688 Chr1 3815698 3815697 - STOWAWAY9_OS 235 0.6933 (2064/2977) 0 * * Os_TE_775650 Chr1 3803021 3802817 - ORSgTEMT01602467 227 0.3512 (1035/2947) 1 Intact * Os_TE_775646 Chr1 3802135 3802136 - ORSgTETNOOT00053 263 0.0018 (2/1093) 0 * Os_TE_775645 Os_TE_775645 Chr1 3802133 3802132 + ORSgTETNOOT00221 261 0.0007 (2/2882) 0 * Os_TE_775646 Os_TE_775643 Chr1 3801748 3801747 + ORSgTEMT01601591 242 0.0003 (1/2949) 0 * * Os_TE_775629 Chr1 3799205 3799550 + ORSgTEMT00100291 345 0.3651 (1073/2939) 1 Intact * Os_TE_775609 Chr1 3790372 3790373 - MERMITEA 1710 0.0064 (19/2986) 0 * Os_TE_775608 Os_TE_775608 Chr1 3790364 3790363 - MERMITEA 1710 0.0057 (17/2985) 0 * Os_TE_775609 Os_TE_775603 Chr1 3788944 3788945 + ORSgTEMT01900006 305 0.0017 (5/2994) 0 * * Os_TE_775594 Chr1 3783052 3783053 + ORSgTETNOOT00908 242 0.0003 (1/2996) 0 * * Os_TE_775593 Chr1 3782621 3782620 + DS-RICE4N 715 0.0003 (1/2957) 0 * * Os_TE_775591 Chr1 3782573 3782574 + ORSgTEMT01601122 212 0.0019 (5/2623) 0 * * Os_TE_775590 Chr1 3782420 3782421 + ORSgTEMT06100010 269 0.1001 (288/2878) 0 * Os_TE_775589 Os_TE_775589 Chr1 3782418 3782417 - ORSgTEMT06100010 269 0.1001 (289/2887) 0 * Os_TE_775590 Os_TE_775558 Chr1 3776999 3777258 - OSTE28 298 0.2539 (758/2986) 1 Intact * Os_TE_775557 Chr1 3776857 3774799 + HELITRON7_OS 10153 0.1091 (326/2987) 1 Intact Os_TE_775556 Os_TE_775556 Chr1 3774799 3776856 - HELITRON7_OS 10153 0.1094 (327/2988) 1 Intact Os_TE_775557 Os_TE_775538 Chr1 3762768 3762769 - ORSgTEMT00100799 337 0.5731 (1443/2518) 0 * * Os_TE_775537 Chr1 3762306 3762307 - RIREX_LTR 8828 0.0007 (2/2898) 0 * Os_TE_775536 Os_TE_775536 Chr1 3762302 3762301 + RIREX_LTR 8828 0.0007 (2/2830) 0 * Os_TE_775537 Os_TE_775524 Chr1 3759802 3759803 + GYPSY-A_LTR 8951 0.1457 (432/2965) 0 * Os_TE_775523 Os_TE_775523 Chr1 3759799 3759798 - SZ-40LTR 2465 0.1483 (440/2967) 0 * Os_TE_775524 Os_TE_775522 Chr1 3759672 3759673 - TYPEU1 380 0.0007 (2/2965) 0 * * Os_TE_775521 Chr1 3759610 3748476 + SPMLIKE 10989 0.1066 (317/2973) 1 Intact Os_TE_775515 Os_TE_775515 Chr1 3748476 3759611 - ORSgTETN00200001 10994 0.1043 (309/2964) 1 Intact Os_TE_775521 Os_TE_775514 Chr1 3748457 3748458 - ORSgTEMT01601493 303 0.0013 (4/2964) 0 * * Os_TE_775513 Chr1 3748300 3748299 - CENTRE 280 0.0023 (7/2981) 0 * * Os_TE_775485 Chr1 3735330 3735331 - ORSgTETNOOT02417 265 0.0013 (4/2983) 0 * Os_TE_775484 Os_TE_775484 Chr1 3735328 3735327 - INDITTO 263 0.0017 (5/2985) 0 * Os_TE_775485 Os_TE_775469 Chr1 3730881 3730882 + ORSiTERTOOT00296 5553 0.0003 (1/2991) 0 * Os_TE_775468 Os_TE_775468 Chr1 3730877 3730876 - SC-3_LTR 5748 0.0003 (1/2992) 0 * Os_TE_775469 Os_TE_775454 Chr1 3725533 3725534 + ORSiTERTOOT00296 5553 0.0003 (1/2990) 0 * Os_TE_775453 Os_TE_775453 Chr1 3725529 3725528 - SC-3_LTR 5748 0.0003 (1/2992) 0 * Os_TE_775454 Os_TE_775443 Chr1 3721766 3721767 - SC-3_LTR 5748 0.0010 (3/2995) 0 * Os_TE_775442 Os_TE_775442 Chr1 3721762 3721761 + ORSiTERTOOT00296 5553 0.0010 (3/2996) 0 * Os_TE_775443 Os_TE_775437 Chr1 3719314 3719315 - RETRO2A_LTR 12895 0.0068 (20/2937) 0 * Os_TE_775436 Os_TE_775436 Chr1 3719310 3719309 + RETRO1_LTR 8314 0.0071 (21/2947) 0 * Os_TE_775437 Os_TE_775425 Chr1 3709968 3709969 + ORSgTEMT04600010 284 0.0020 (6/2981) 0 * Os_TE_775424 Os_TE_775424 Chr1 3709966 3709965 + ID-4 284 0.0020 (6/2978) 0 * Os_TE_775425 Os_TE_775383 Chr1 3690693 3690694 - DS-RICE2N 613 0.0047 (14/2968) 0 * Os_TE_775382 Os_TE_775382 Chr1 3690686 3690685 + DS-RICE4N 715 0.0047 (14/2970) 0 * Os_TE_775383 Os_TE_775381 Chr1 3690077 3690078 + OSTE33 1012 0.0043 (13/2998) 0 * Os_TE_775380 Os_TE_775380 Chr1 3690068 3690067 + OSTE33 1012 0.0043 (13/2998) 0 * Os_TE_775381 Os_TE_775376 Chr1 3687442 3687443 + ORSgTEMT00600376 329 0.0070 (21/2994) 0 * Os_TE_775375 Os_TE_775375 Chr1 3687437 3687436 + ORSgTEMT00600272 361 0.0063 (19/2995) 0 * Os_TE_775376 Os_TE_775372 Chr1 3685302 3685303 + ORSiTERTOOT00296 5553 0.0020 (6/2994) 0 * Os_TE_775371 Os_TE_775371 Chr1 3685298 3685297 - SC-3_LTR 5748 0.0020 (6/2994) 0 * Os_TE_775372 Os_TE_775368 Chr1 3684072 3684071 + TRUNCATOR2_LTR 2904 0.0703 (207/2945) 0 * * Os_TE_775367 Chr1 3684015 3684016 - COPIA2-LTR_OS 6433 0.0003 (1/2944) 0 * Os_TE_775366 Os_TE_775366 Chr1 3684011 3684010 + COPIA2-LTR_OS 6433 0.0003 (1/2949) 0 * Os_TE_775367 Os_TE_775364 Chr1 3682240 3682241 + ORSiCMCM00100019 2717 0.0003 (1/2997) 0 * Os_TE_775363 Os_TE_775363 Chr1 3682236 3682235 - TRUNCATOR2_LTR 2904 0.0003 (1/2978) 0 * Os_TE_775364 Os_TE_775352 Chr1 3675218 3675219 + COPI2_LTR 4733 0.0007 (2/2991) 0 * Os_TE_775351 Os_TE_775351 Chr1 3675214 3675213 - COPI2_LTR 4733 0.0007 (2/2991) 0 * Os_TE_775352 Os_TE_775329 Chr1 3667398 3667397 + STOWAWAY51_OS 246 0.0003 (1/2990) 0 * Os_TE_775328 Os_TE_775328 Chr1 3667392 3667393 - STOWAWAY51_OS 246 0.0003 (1/2990) 0 * Os_TE_775329 Os_TE_775319 Chr1 3666746 3666747 + TESSBIG 4057 0.0053 (16/2997) 0 * Os_TE_775318 Os_TE_775318 Chr1 3666739 3666738 - TESSBIG 4057 0.0060 (18/2998) 0 * Os_TE_775319 Os_TE_775314 Chr1 3664870 3664871 + F770 284 0.0003 (1/2995) 0 * Os_TE_775313 Os_TE_775313 Chr1 3664868 3664867 - F770 284 0.0003 (1/2995) 0 * Os_TE_775314 Os_TE_775309 Chr1 3660149 3660150 - RETROSAT2LTR 12796 0.0003 (1/2965) 0 * * Os_TE_775290 Chr1 3655110 3655111 - OSR3_LTR 5201 0.0003 (1/2996) 0 * Os_TE_775289 Os_TE_775289 Chr1 3655106 3655105 + OSR3_LTR 5201 0.0003 (1/2998) 0 * Os_TE_775290 Os_TE_775287 Chr1 3651464 3652241 + MUDRN1_OS 764 0.2037 (605/2970) 1 Intact * Os_TE_775261 Chr1 3640640 3640289 - CASLET 354 0.2106 (630/2992) 1 Intact Os_TE_775259 Os_TE_775259 Chr1 3640289 3640640 + CASLET 354 0.2121 (635/2994) 1 Intact Os_TE_775261 Os_TE_775226 Chr1 3632713 3632714 - RIREX_LTR 8828 0.0007 (2/2993) 0 * Os_TE_775225 Os_TE_775225 Chr1 3632709 3632708 + RIREX_LTR 8828 0.0007 (2/2996) 0 * Os_TE_775226 Os_TE_775220 Chr1 3631842 3631841 - OSTE20 496 0.4616 (1255/2719) 0 * * Os_TE_775211 Chr1 3625619 3625826 + ORSgTEMT01400032 215 0.5046 (1481/2935) 1 Intact * Os_TE_775208 Chr1 3625552 3625551 + STOWAWAY21_OS 243 0.5121 (1519/2966) 0 * * Os_TE_775205 Chr1 3625382 3625383 - NDNA2TNA_OS 346 0.6921 (2066/2985) 0 * * Os_TE_775201 Chr1 3620960 3620959 + STOWAWAY51_OS 246 0.4804 (1435/2987) 0 * Os_TE_775200 Os_TE_775200 Chr1 3620951 3620952 + STOWAWAY51_OS 246 0.4580 (1358/2965) 0 * Os_TE_775201 Os_TE_775196 Chr1 3619042 3619043 + INDITTO 263 0.0044 (13/2983) 0 * Os_TE_775195 Os_TE_775195 Chr1 3619040 3619039 - INDITTO 263 0.0040 (12/2979) 0 * Os_TE_775196 Os_TE_775193 Chr1 3617644 3617643 + STOWAWAY51_OS 246 0.0003 (1/2997) 0 * Os_TE_775192 Os_TE_775192 Chr1 3617638 3617639 - STOWAWAY51_OS 246 0.0003 (1/2996) 0 * Os_TE_775193 Os_TE_775191 Chr1 3617476 3616868 + JOUZHENA 607 0.2083 (624/2996) 1 Intact Os_TE_775190 Os_TE_775190 Chr1 3616868 3617476 - JOUZHENA 607 0.2074 (620/2990) 1 Intact Os_TE_775191 Os_TE_775181 Chr1 3615309 3615310 - SC-3_LTR 5748 0.0003 (1/2978) 0 * Os_TE_775180 Os_TE_775180 Chr1 3615305 3615304 + ORSiTERTOOT00296 5553 0.0003 (1/2975) 0 * Os_TE_775181 Os_TE_775172 Chr1 3613765 3613766 - SC-3_LTR 5748 0.0044 (13/2985) 0 * Os_TE_775171 Os_TE_775171 Chr1 3613761 3613760 + ORSiTERTOOT00296 5553 0.0044 (13/2982) 0 * Os_TE_775172 Os_TE_775169 Chr1 3612553 3612554 + SC-8_LTR 4951 0.0013 (4/2965) 0 * Os_TE_775168 Os_TE_775168 Chr1 3612549 3612548 - SC-8_LTR 4951 0.0013 (4/2966) 0 * Os_TE_775169 Os_TE_775150 Chr1 3607296 3607297 + F770 284 0.0104 (31/2981) 0 * * Os_TE_775141 Chr1 3604741 3604740 - F770 284 0.0003 (1/2947) 0 * * Os_TE_775122 Chr1 3597847 3597848 - STOWAWAY11_OS 292 0.0010 (3/2943) 0 * Os_TE_775121 Os_TE_775121 Chr1 3597846 3597845 + STOWAWAY11_OS 292 0.0020 (6/2952) 0 * Os_TE_775122 Os_TE_775109 Chr1 3596142 3596143 - ORSiTETNOOT00134 607 0.0030 (8/2643) 0 * * Os_TE_775096 Chr1 3590117 3590116 + HELITRON7_OS 10153 0.1862 (479/2573) -1 * Os_TE_775095 Os_TE_775095 Chr1 3590113 3590114 - HELITRON7_OS 10153 0.1808 (505/2793) 0 * Os_TE_775096 Os_TE_775085 Chr1 3587267 3587266 - NDNA1TNA_OS 334 0.0027 (8/2993) 0 * Os_TE_775084 Os_TE_775084 Chr1 3587260 3587261 + NDNA1TNA_OS 334 0.0027 (8/2993) 0 * Os_TE_775085 Os_TE_775083 Chr1 3586934 3586935 - MPING 430 0.0017 (5/2978) 0 * Os_TE_775082 Os_TE_775082 Chr1 3586932 3586931 + MPING 430 0.0017 (5/2978) 0 * Os_TE_775083 Os_TE_775078 Chr1 3585106 3585105 + ORSgTETNOOT01286 235 0.0003 (1/2920) 0 * * Os_TE_775073 Chr1 3583656 3583655 - STOWAWAY32_OS 261 0.0010 (3/2968) 0 * Os_TE_775072 Os_TE_775072 Chr1 3583655 3583656 + STOWAWAY45_OS 266 0.0014 (4/2960) 0 * Os_TE_775073 Os_TE_775061 Chr1 3582277 3582278 + F569 228 0.0085 (25/2956) 0 * Os_TE_775060 Os_TE_775060 Chr1 3582275 3582274 - F569 228 0.0094 (28/2974) 0 * Os_TE_775061 Os_TE_775041 Chr1 3572784 3572785 + ORSiTERTOOT00296 5553 0.0034 (10/2972) 0 * Os_TE_775040 Os_TE_775040 Chr1 3572780 3572779 - SC-3_LTR 5748 0.0030 (9/2966) 0 * Os_TE_775041 Os_TE_775020 Chr1 3565314 3565315 + SC-8_LTR 4951 0.0003 (1/2942) 0 * Os_TE_775019 Os_TE_775019 Chr1 3565310 3565309 - SC-8_LTR 4951 0.0003 (1/2953) 0 * Os_TE_775020 Os_TE_775010 Chr1 3561406 3561407 - SC-3_LTR 5748 0.0003 (1/2963) 0 * Os_TE_775009 Os_TE_775009 Chr1 3561402 3561401 + ORSiTERTOOT00296 5553 0.0003 (1/2967) 0 * Os_TE_775010 Os_TE_775003 Chr1 3555784 3555785 - NDNA1TNA_OS 334 0.0027 (8/2989) 0 * Os_TE_775002 Os_TE_775002 Chr1 3555783 3555782 + NDNA1TNA_OS 334 0.0027 (8/2989) 0 * Os_TE_775003 Os_TE_774997 Chr1 3554190 3554189 - ORSgTEMT00900099 250 0.0020 (6/2996) 0 * Os_TE_774996 Os_TE_774996 Chr1 3554186 3554187 + ORSgTEMT00901844 250 0.0020 (6/2995) 0 * Os_TE_774997 Os_TE_774989 Chr1 3550509 3550508 - TYPEU1 380 0.0047 (14/2982) 0 * * Os_TE_774985 Chr1 3547842 3547841 - STOWAWAY51_OS 246 0.0024 (7/2968) 0 * Os_TE_774984 Os_TE_774984 Chr1 3547836 3547837 + STOWAWAY51_OS 246 0.0030 (9/2967) 0 * Os_TE_774985 Os_TE_774928 Chr1 3539956 3539957 + ORSiTERTOOT00033 4884 0.0013 (4/2992) 0 * Os_TE_774927 Os_TE_774927 Chr1 3539953 3539952 - RETROFIT_LTR 4866 0.0013 (4/2989) 0 * Os_TE_774928 Os_TE_774915 Chr1 3533915 3533914 - STOWAWAY44_OS 240 0.0027 (8/2982) 0 * Os_TE_774914 Os_TE_774914 Chr1 3533912 3533913 + STOWAWAY44_OS 240 0.0027 (8/2974) 0 * Os_TE_774915 Os_TE_774908 Chr1 3530487 3530488 - CACTA-M 1129 0.0031 (9/2921) 0 * Os_TE_774907 Os_TE_774907 Chr1 3530483 3530482 + CACTA-H 1152 0.0028 (8/2883) 0 * Os_TE_774908 Os_TE_774901 Chr1 3527426 3527427 + ORSgTEMT00101587 341 0.0004 (1/2841) 0 * * Os_TE_774899 Chr1 3526922 3526923 + RETROSAT4_LTR 13504 0.0003 (1/2929) 0 * Os_TE_774898 Os_TE_774898 Chr1 3526918 3526917 - RETROSAT4_LTR 13504 0.0003 (1/2932) 0 * Os_TE_774899 Os_TE_774895 Chr1 3525868 3524992 + SZ-9LTR 965 0.8142 (2424/2977) 1 Intact Os_TE_774892 Os_TE_774892 Chr1 3524992 3525861 - SZ-9LTR 965 0.8184 (2433/2973) 1 Intact Os_TE_774895 Os_TE_774878 Chr1 3517207 3517208 - RIREX_LTR 8828 0.0017 (5/2995) 0 * Os_TE_774877 Os_TE_774877 Chr1 3517203 3517202 + RIREX_LTR 8828 0.0013 (4/2978) 0 * Os_TE_774878 Os_TE_774848 Chr1 3499215 3499216 + COPIA2-LTR_OS 6433 0.0010 (3/2997) 0 * Os_TE_774847 Os_TE_774847 Chr1 3499211 3499210 - COPIA2-LTR_OS 6433 0.0010 (3/2998) 0 * Os_TE_774848 Os_TE_774818 Chr1 3487851 3487852 + INDITTO 263 0.0017 (5/2903) 0 * Os_TE_774817 Os_TE_774817 Chr1 3487849 3487848 - INDITTO 263 0.0021 (6/2892) 0 * Os_TE_774818 Os_TE_774816 Chr1 3487378 3487379 + INDITTO 263 0.1898 (561/2956) 0 * Os_TE_774815 Os_TE_774815 Chr1 3487376 3487375 - INDITTO 263 0.1885 (557/2955) 0 * Os_TE_774816 Os_TE_774806 Chr1 3484306 3484307 + RIREX_LTR 8828 0.0158 (47/2974) 0 * Os_TE_774805 Os_TE_774805 Chr1 3484302 3484301 - RIREX_LTR 8828 0.0161 (48/2983) 0 * Os_TE_774806 Os_TE_774800 Chr1 3481176 3481175 + SC-8_LTR 4951 0.0003 (1/2999) 0 * * Os_TE_774799 Chr1 3480637 3480638 + TOS17LTR 138 0.0010 (3/2990) 0 * Os_TE_774798 Os_TE_774798 Chr1 3480633 3480632 - TOS17LTR 138 0.0010 (3/2993) 0 * Os_TE_774799 Os_TE_774790 Chr1 3478256 3478257 + TOS17LTR 138 0.0007 (2/2998) 0 * Os_TE_774789 Os_TE_774789 Chr1 3478252 3478251 - TOS17LTR 138 0.0007 (2/2995) 0 * Os_TE_774790 Os_TE_774787 Chr1 3477879 3477880 + ORSgTEMT00100531 325 0.0007 (2/2987) 0 * Os_TE_774786 Os_TE_774786 Chr1 3477877 3477876 - NDNA1TNA_OS 334 0.0033 (10/2997) 0 * Os_TE_774787 Os_TE_774785 Chr1 3477862 3477863 - NDNA1TNA_OS 334 0.0030 (9/2991) 0 * Os_TE_774784 Os_TE_774784 Chr1 3477860 3477859 + ORSgTEMT00100531 325 0.0007 (2/2985) 0 * Os_TE_774785 Os_TE_774778 Chr1 3473597 3473598 + OSR3_LTR 5201 0.0030 (9/2996) 0 * Os_TE_774777 Os_TE_774777 Chr1 3473593 3473592 - OSR3_LTR 5201 0.0030 (9/2996) 0 * Os_TE_774778 Os_TE_774764 Chr1 3464956 3464957 + TWIF 586 0.0003 (1/2982) 0 * Os_TE_774763 Os_TE_774763 Chr1 3464949 3464948 - ORSiTETNOOT00134 607 0.0003 (1/2963) 0 * Os_TE_774764 Os_TE_774755 Chr1 3460998 3460999 - ORSiTERTOOT00402 2660 0.0030 (9/2987) 0 * Os_TE_774754 Os_TE_774754 Chr1 3460994 3460993 + ORSiTERTOOT00402 2660 0.0030 (9/2974) 0 * Os_TE_774755 Os_TE_774735 Chr1 3452106 3452107 + MPING 430 0.0010 (3/2985) 0 * * Os_TE_774733 Chr1 3451809 3451808 + ORSgTETNOOT00908 242 0.0003 (1/2992) 0 * * Os_TE_774732 Chr1 3450903 3450904 + HARB-1_OS 5166 0.0128 (38/2965) 0 * Os_TE_774731 Os_TE_774731 Chr1 3450901 3450900 - HARB-1_OS 5166 0.0136 (40/2941) 0 * Os_TE_774732 Os_TE_774717 Chr1 3442219 3442218 - TRUNCATOR 2918 0.1209 (335/2770) 0 * * Os_TE_774699 Chr1 3437849 3437848 - MuDR-5_OS 17471 0.0097 (27/2780) 0 * * Os_TE_774690 Chr1 3435628 3435627 + STOWAWAY44_OS 240 0.0003 (1/2926) 0 * * Os_TE_774688 Chr1 3434075 3434076 - TESS 244 0.0161 (48/2990) 0 * Os_TE_774687 Os_TE_774687 Chr1 3434068 3434067 + ORSgTETNOOT01668 244 0.0170 (51/2992) 0 * Os_TE_774688 Os_TE_774686 Chr1 3432225 3432226 + KIDDOC 275 0.0010 (3/2986) 0 * Os_TE_774685 Os_TE_774685 Chr1 3432221 3432220 - KIDDOC 275 0.0010 (3/2996) 0 * Os_TE_774686 Os_TE_774672 Chr1 3421157 3421156 + MERMITEA 1710 0.0265 (79/2985) 0 * * Os_TE_774651 Chr1 3417419 3417418 + NDNA1TNA_OS 334 0.0007 (2/2894) 0 * * Os_TE_774648 Chr1 3416962 3416341 - DS-RICE4N 715 0.5367 (1536/2862) 0.67 Intact Os_TE_774647 Os_TE_774647 Chr1 3416341 3416966 + DS-RICE4N 715 0.5404 (1580/2924) 1 Intact Os_TE_774648 Os_TE_774645 Chr1 3414165 3414164 + STOWAWAY51_OS 246 0.0160 (48/2996) 0 * Os_TE_774644 Os_TE_774644 Chr1 3414159 3414160 + ORSgTEMT01601591 242 0.0161 (48/2990) 0 * Os_TE_774645 Os_TE_774642 Chr1 3413208 3413207 + ORSgTEMT01700513 151 0.0057 (17/2996) 0 * * Os_TE_774640 Chr1 3412282 3412283 - ORSgTETNOOT01607 258 0.0057 (17/2971) 0 * * Os_TE_774630 Chr1 3407947 3407948 + TOS17LTR 138 0.0167 (50/2997) 0 * Os_TE_774629 Os_TE_774629 Chr1 3407943 3407942 - TOS17LTR 138 0.0170 (51/2994) 0 * Os_TE_774630 Os_TE_774626 Chr1 3404722 3404721 + TRUNCATOR 2918 0.1343 (402/2993) 0 * Os_TE_774625 Os_TE_774625 Chr1 3404721 3404722 - TRUNCATOR 2918 0.1254 (371/2959) 0 * Os_TE_774626 Os_TE_774623 Chr1 3403485 3403709 + ORSgTEMT02400206 225 0.3918 (1172/2991) 1 Intact * Os_TE_774592 Chr1 3391902 3391903 - TRUNCATOR2_LTR 2904 0.0003 (1/2959) 0 * Os_TE_774591 Os_TE_774591 Chr1 3391898 3391897 + ORSiCMCM00100019 2717 0.0003 (1/2965) 0 * Os_TE_774592 Os_TE_774556 Chr1 3381866 3381867 + COPI2_LTR 4733 0.0007 (2/2983) 0 * Os_TE_774555 Os_TE_774555 Chr1 3381862 3381861 - COPI2_LTR 4733 0.0007 (2/2972) 0 * Os_TE_774556 Os_TE_774529 Chr1 3374264 3374265 - RIREX_LTR 8828 0.0010 (3/2916) 0 * Os_TE_774528 Os_TE_774528 Chr1 3374260 3374259 + RIREX_LTR 8828 0.0010 (3/2996) 0 * Os_TE_774529 Os_TE_774527 Chr1 3373930 3373931 - ORSgTEMT02400179 221 0.0083 (25/2998) 0 * Os_TE_774526 Os_TE_774526 Chr1 3373929 3373928 - TYPEM 227 0.0083 (25/2998) 0 * Os_TE_774527 Os_TE_774519 Chr1 3370897 3370898 + CACTA-I 1124 0.0003 (1/2995) 0 * Os_TE_774518 Os_TE_774518 Chr1 3370895 3370894 - CACTA-M 1129 0.0003 (1/2962) 0 * Os_TE_774519 Os_TE_774517 Chr1 3370624 3370625 - COWARD 200 0.0245 (73/2974) 0 * * Os_TE_774496 Chr1 3361104 3361103 - ORSgTEMT00500439 153 0.0337 (101/2994) 0 * Os_TE_774495 Os_TE_774495 Chr1 3361102 3361103 + ORSgTEMT00502437 145 0.0347 (104/2993) 0 * Os_TE_774496 Os_TE_774488 Chr1 3356122 3356123 + RETRO1_LTR 8314 0.0617 (184/2980) 0 * Os_TE_774487 Os_TE_774487 Chr1 3356118 3356117 - RETRO1_LTR 8314 0.0616 (181/2938) 0 * Os_TE_774488 Os_TE_774478 Chr1 3348066 3348067 + ORSiTEMT00100001 540 0.0007 (2/2979) 0 * * Os_TE_774475 Chr1 3345064 3345063 + ORSgTEMT00501786 149 0.7714 (2302/2984) 0 * * Os_TE_774461 Chr1 3342810 3342809 + STOWAWAY21_OS 243 0.0020 (6/2972) 0 * Os_TE_774460 Os_TE_774460 Chr1 3342809 3342810 + ORSgTEMT01601122 212 0.0017 (5/2972) 0 * Os_TE_774461 Os_TE_774450 Chr1 3334795 3334796 - SC-3_LTR 5748 0.0003 (1/2993) 0 * Os_TE_774449 Os_TE_774449 Chr1 3334791 3334790 + ORSiTERTOOT00296 5553 0.0003 (1/2993) 0 * Os_TE_774450 Os_TE_774447 Chr1 3332052 3332295 + ORSgTETNOOT01668 244 0.1177 (351/2983) 1 Intact * Os_TE_774442 Chr1 3323525 3323524 + ORSgTEMT01700715 134 0.7676 (2239/2917) 0 * Os_TE_774441 Os_TE_774441 Chr1 3323524 3323525 + STOWAWAY50_OS 174 0.7550 (2062/2731) 0 * Os_TE_774442 Os_TE_774439 Chr1 3322652 3322653 + MERMITE18E 1528 0.0156 (46/2955) 0 * Os_TE_774438 Os_TE_774438 Chr1 3322648 3322647 - MERMITE18E 1528 0.0159 (47/2947) 0 * Os_TE_774439 Os_TE_774434 Chr1 3320353 3320352 - ORSgTEMT00400010 151 0.0004 (1/2832) 0 * * Os_TE_774430 Chr1 3319574 3319575 - SZ-48LTR 3632 0.0085 (25/2951) 0 * Os_TE_774429 Os_TE_774429 Chr1 3319570 3319569 + SZ-48LTR 3632 0.0084 (25/2987) 0 * Os_TE_774430 Os_TE_774427 Chr1 3318907 3318908 - RIREX_LTR 8828 0.1175 (49/417) 0 * Os_TE_774426 Os_TE_774426 Chr1 3318903 3318902 + RIREX_LTR 8828 0.0165 (49/2961) 0 * Os_TE_774427 Os_TE_774405 Chr1 3308476 3308475 - RETROSAT2LTR 12796 0.1529 (457/2988) 0 * * Os_TE_774365 Chr1 3287900 3287901 - SZ-62LTR 3649 0.1403 (394/2808) 0 * * Os_TE_774363 Chr1 3287778 3287520 + STOWAWAY45_OS 266 0.7969 (2185/2742) 1 Intact * Os_TE_774344 Chr1 3281012 3282526 - ATLANTYS-LTR_OS 13740 0.4000 (410/1025) 1 Solo_LTR * Os_TE_774336 Chr1 3278579 3278329 + ORSgTEMT01400032 215 0.4417 (398/901) 1 Intact * Os_TE_774332 Chr1 3275133 3275134 - TYPEM 227 0.0090 (5/557) 0 * Os_TE_774331 Os_TE_774331 Chr1 3275132 3275131 - ORSgTEMT02400179 221 0.0107 (6/562) 0 * Os_TE_774332 Os_TE_774329 Chr1 3272685 3272539 - ORSgTEMT00502359 149 0.7316 (417/570) 1 Intact Os_TE_774327 Os_TE_774327 Chr1 3272533 3272673 - ORSgTEMT00501291 153 0.7284 (405/556) 1 Intact Os_TE_774329 Os_TE_774326 Chr1 3271668 3271667 - ORSgTETNOOT01930 140 0.1547 (86/556) 0 * * Os_TE_774324 Chr1 3271415 3271661 - ORSgTEMT00901723 248 0.7405 (408/551) 1 Intact * Os_TE_774323 Chr1 3271311 3271167 + ORSgTEMT00502218 149 0.7356 (409/556) 1 Intact Os_TE_774321 Os_TE_774321 Chr1 3271163 3271309 - ORSgTEMT00502363 147 0.8053 (426/529) 1 Intact Os_TE_774323 Os_TE_774316 Chr1 3269370 3266087 - MERMITE18C 1473 0.7264 (393/541) 1 Intact * Os_TE_774298 Chr1 3261489 3261490 + SZ-55_LTR 10318 0.0018 (4/2270) 0 * * Os_TE_774290 Chr1 3255830 3255831 + NDNA1TNA_OS 334 0.0194 (49/2522) 0 * Os_TE_774289 Os_TE_774289 Chr1 3255828 3255827 - NDNA1TNA_OS 334 0.0204 (51/2506) 0 * Os_TE_774290 Os_TE_774287 Chr1 3254670 3254669 + ORSgTEMT01601122 212 0.0967 (62/641) 0 * * Os_TE_774278 Chr1 3251906 3251905 - RIREX_LTR 8828 0.0016 (4/2546) 0 * * Os_TE_774275 Chr1 3250450 3250451 - ORSgTEMT00500675 140 0.0914 (233/2550) 0 * Os_TE_774274 Os_TE_774274 Chr1 3250448 3250447 - ORSgTETNOOT01930 140 0.0992 (253/2551) 0 * Os_TE_774275 Os_TE_774261 Chr1 3241828 3241829 - ORSgTEMT01601208 238 0.0285 (84/2946) 0 * * Os_TE_774254 Chr1 3239618 3241117 + ORSgTETN00200005 1121 0.1298 (285/2195) 1 Intact * Os_TE_774252 Chr1 3238608 3237745 - CRATA-2 851 0.1375 (347/2524) 1 Intact Os_TE_774251 Os_TE_774251 Chr1 3237745 3238608 + CRATA-2 851 0.1407 (357/2538) 1 Intact Os_TE_774252 Os_TE_774250 Chr1 3237678 3237677 - ORSgTEMT00500111 145 0.1095 (309/2821) 0 * * Os_TE_774249 Chr1 3237458 3237305 + ORSgTEMT01701547 160 0.2406 (682/2835) 1 Intact Os_TE_774248 Os_TE_774248 Chr1 3237307 3237456 - STOWAWAY1_OS 149 0.2351 (680/2892) 1 Intact Os_TE_774249 Os_TE_774247 Chr1 3237050 3237049 + ORSgTEMT01601787 220 0.0020 (6/2966) 0 * * Os_TE_774245 Chr1 3236740 3236741 - SZ-55_LTR 10318 0.0013 (4/2979) 0 * Os_TE_774244 Os_TE_774244 Chr1 3236736 3236735 + SZ-55_LTR 10318 0.0013 (4/2986) 0 * Os_TE_774245 Os_TE_774228 Chr1 3228704 3228560 + ORSgTEMT00502025 149 0.5571 (371/666) 1 Intact Os_TE_774227 Os_TE_774227 Chr1 3228556 3228702 - ORSgTEMT00502287 149 0.8937 (370/414) 1 Intact Os_TE_774228 Os_TE_774168 Chr1 3201217 3200245 - COPIA1-LTR_OS 9292 0.1580 (361/2285) 1 Solo_LTR * Os_TE_774167 Chr1 3198146 3198147 - NDNA1TNA_OS 334 0.0419 (51/1217) 0 * * Os_TE_774163 Chr1 3195822 3195821 + ORSgTETNOOT01275 140 0.0058 (6/1027) 0 * * Os_TE_774162 Chr1 3195791 3195792 - ORSgTEMT00501356 145 0.1532 (446/2912) 0 * * Os_TE_774158 Chr1 3193114 3192995 + ORSgTEMT01701224 156 0.5595 (654/1169) 1 Intact * Os_TE_774151 Chr1 3189331 3189236 - TREP219 104 0.4712 (1202/2551) 0.8 Intact * Os_TE_774131 Chr1 3187454 3187787 - ORSgTEMT00100124 360 0.3633 (412/1134) 1 Intact * Os_TE_774127 Chr1 3182964 3182963 - ORSiTERTOOT00402 2660 0.0003 (1/2993) 0 * * Os_TE_774123 Chr1 3181932 3181931 - ORSgTEMT00101174 225 0.0201 (60/2989) 0 * * Os_TE_774121 Chr1 3181484 3181485 - STOWAWAY51_OS 246 0.0003 (1/2988) 0 * * Os_TE_774119 Chr1 3181327 3181326 - TYPEM 227 0.3716 (479/1289) 0 * * Os_TE_774114 Chr1 3178039 3178040 - RIREX_LTR 8828 0.0312 (23/738) 0 * Os_TE_774113 Os_TE_774113 Chr1 3178035 3178034 + RIREX_LTR 8828 0.0324 (24/740) 0 * Os_TE_774114 Os_TE_774112 Chr1 3177224 3177225 + RETROFIT3_LTR 5391 0.0321 (24/748) 0 * Os_TE_774111 Os_TE_774111 Chr1 3177220 3177219 - RETROFIT3_LTR 5391 0.0299 (22/736) 0 * Os_TE_774112 Os_TE_774110 Chr1 3177040 3177041 - RIREX_LTR 8828 0.0316 (23/729) 0 * Os_TE_774109 Os_TE_774109 Chr1 3177036 3177035 + RIREX_LTR 8828 0.0326 (24/737) 0 * Os_TE_774110 Os_TE_774101 Chr1 3175420 3176281 + THRIA 534 0.4953 (372/751) 1 Intact * Os_TE_774091 Chr1 3174498 3174499 + RETROSAT4_LTR 13504 0.0316 (22/696) 0 * Os_TE_774090 Os_TE_774090 Chr1 3174494 3174493 - RETROSAT4_LTR 13504 0.0480 (34/709) 0 * Os_TE_774091 Os_TE_774089 Chr1 3174221 3174222 + COPI2_LTR 4733 0.0380 (28/736) 0 * Os_TE_774088 Os_TE_774088 Chr1 3174217 3174216 - COPI2_LTR 4733 0.0340 (25/735) 0 * Os_TE_774089 Os_TE_774085 Chr1 3172614 3154610 + GYPSI_LTR 18003 0.2693 (370/1374) 1 Intact * Os_TE_774054 Chr1 3145853 3145854 - F770 284 0.0446 (21/471) 0 * Os_TE_774053 Os_TE_774053 Chr1 3145851 3145850 + F770 284 0.0397 (21/529) 0 * Os_TE_774054 Os_TE_774051 Chr1 3143739 3143740 - RIRE5-LTR_OS 6427 0.0062 (5/812) 0 * Os_TE_774050 Os_TE_774050 Chr1 3143732 3143731 + RIRE5-LTR_OS 6427 0.0062 (5/811) 0 * Os_TE_774051 Os_TE_774042 Chr1 3142841 3142840 - SZ-35LTR 3853 0.0821 (65/792) 0 * * Os_TE_774035 Chr1 3141372 3141141 + ORSgTEMT01600527 241 0.2603 (777/2985) 1 Intact * Os_TE_774026 Chr1 3139146 3138911 + ORSgTETNOOT00908 242 0.0128 (38/2974) 1 Intact * Os_TE_774024 Chr1 3138807 3138567 + ORSgTETNOOT02019 240 0.3106 (926/2981) 1 Intact Os_TE_774021 Os_TE_774021 Chr1 3138567 3138806 + ORSgTETNOOT00908 242 0.3095 (919/2969) 1 Intact Os_TE_774024 Os_TE_774020 Chr1 3138508 3138509 - SC-8_LTR 4951 0.0003 (1/2982) 0 * Os_TE_774019 Os_TE_774019 Chr1 3138504 3138503 + SC-8_LTR 4951 0.0003 (1/2980) 0 * Os_TE_774020 Os_TE_774018 Chr1 3138479 3138480 + TOS17LTR 138 0.0057 (17/2974) 0 * Os_TE_774017 Os_TE_774017 Chr1 3138475 3138474 - TOS17LTR 138 0.0071 (21/2978) 0 * Os_TE_774018 Os_TE_774006 Chr1 3131130 3131131 + OSTE33 1012 0.0022 (5/2274) 0 * Os_TE_774005 Os_TE_774005 Chr1 3131121 3131120 + OSTE33 1012 0.0054 (16/2989) 0 * Os_TE_774006 Os_TE_774004 Chr1 3131106 3130823 - F770 284 0.1222 (364/2978) 1 Intact Os_TE_774003 Os_TE_774003 Chr1 3130823 3131106 + F770 284 0.1220 (363/2976) 1 Intact Os_TE_774004 Os_TE_774002 Chr1 3130794 3130795 - NDNA1TNA_OS 334 0.0087 (26/2983) 0 * * Os_TE_774000 Chr1 3127036 3127037 - F569 228 0.0013 (4/2982) 0 * Os_TE_773999 Os_TE_773999 Chr1 3127034 3127033 + F569 228 0.0013 (4/2987) 0 * Os_TE_774000 Os_TE_773995 Chr1 3126519 3126518 + ORSgTETN00200005 1121 0.0920 (269/2924) 0 * * Os_TE_773984 Chr1 3123847 3123848 + GYPSY-A_LTR 8951 0.0635 (189/2978) 0 * Os_TE_773983 Os_TE_773983 Chr1 3123843 3123842 - GYPSY-A_LTR 8951 0.0650 (194/2984) 0 * Os_TE_773984 Os_TE_773980 Chr1 3122495 3122496 - ORSgTETNOOT00323 125 0.0010 (3/2982) 0 * Os_TE_773979 Os_TE_773979 Chr1 3122493 3122492 + ORSgTETNOOT01930 140 0.0020 (6/2983) 0 * Os_TE_773980 Os_TE_773968 Chr1 3114620 3114619 - STOWAWAY51_OS 246 0.0003 (1/2975) 0 * * Os_TE_773963 Chr1 3112789 3112790 + RIRE2_LTR 11306 0.0072 (21/2910) 0 * Os_TE_773962 Os_TE_773962 Chr1 3112785 3112784 - RIRE2_LTR 11306 0.0065 (19/2916) 0 * Os_TE_773963 Os_TE_773955 Chr1 3110217 3110216 + ORSiTERTOOT00296 5553 0.0003 (1/2974) 0 * * Os_TE_773947 Chr1 3107051 3107050 - NDNA1TNA_OS 334 0.0070 (21/2993) 0 * Os_TE_773946 Os_TE_773946 Chr1 3107050 3107051 + NDNA1TNA_OS 334 0.0067 (20/2989) 0 * Os_TE_773947 Os_TE_773932 Chr1 3093620 3093621 - F770 284 0.6116 (1819/2974) 0 * * Os_TE_773931 Chr1 3093114 3093115 - DNAUN1_OS 408 0.3391 (622/1834) 0 * * Os_TE_773930 Chr1 3092717 3092716 - TNR2A 152 0.0131 (21/1603) 0 * * Os_TE_773927 Chr1 3091309 3091310 + RIRE2_LTR 11306 0.1431 (423/2957) 0 * Os_TE_773926 Os_TE_773926 Chr1 3091305 3091304 - RIRE2_LTR 11306 0.1436 (421/2931) 0 * Os_TE_773927 Os_TE_773925 Chr1 3090916 3090917 - MERMITED 1572 0.0041 (12/2948) 0 * Os_TE_773924 Os_TE_773924 Chr1 3090914 3090913 - MERMITED 1572 0.0045 (13/2921) 0 * Os_TE_773925 Os_TE_773916 Chr1 3084677 3084678 - ORSgTEMT02400179 221 0.0070 (21/2986) 0 * * Os_TE_773914 Chr1 3083457 3083456 + SC-8_LTR 4951 0.0003 (1/2997) 0 * * Os_TE_773911 Chr1 3079568 3079569 + COPIA2-LTR_OS 6433 0.0003 (1/2983) 0 * Os_TE_773910 Os_TE_773910 Chr1 3079564 3079563 - COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_773911 Os_TE_773909 Chr1 3078522 3078521 + ORSgTEMT01700299 212 0.7556 (2260/2991) 0 * * Os_TE_773906 Chr1 3077641 3077465 + TREP220 109 0.4843 (262/541) 1 Intact * Os_TE_773894 Chr1 3075700 3075699 - ORSgTEMT00900110 209 0.0036 (1/280) 0 * * Os_TE_773882 Chr1 3074444 3074445 - LINE-7_OS 7090 0.0179 (5/280) 0 * * Os_TE_773875 Chr1 3071379 3071664 + STOWAWAY11_OS 292 0.2863 (69/241) 1 Intact * Os_TE_773868 Chr1 3065247 3065248 + SC-7_LTR 4431 0.0025 (2/794) 0 * Os_TE_773867 Os_TE_773867 Chr1 3065243 3065242 - SC-7_LTR 4431 0.0025 (2/793) 0 * Os_TE_773868 Os_TE_773865 Chr1 3065213 3065212 - SC-7_LTR 4431 0.0013 (1/795) 0 * * Os_TE_773863 Chr1 3061741 3061742 - SC-3_LTR 5748 0.0013 (1/796) 0 * Os_TE_773862 Os_TE_773862 Chr1 3061737 3061736 + ORSiTERTOOT00296 5553 0.0013 (1/797) 0 * Os_TE_773863 Os_TE_773861 Chr1 3061140 3061141 + OSTE18 129 0.7496 (2218/2959) 0 * * Os_TE_773859 Chr1 3060336 3060675 - ORSgTEMT03000039 377 0.2827 (746/2639) 1 Intact * Os_TE_773855 Chr1 3058631 3058632 + RIRE5-LTR_OS 6427 0.0050 (15/2994) 0 * Os_TE_773854 Os_TE_773854 Chr1 3058624 3058623 - RIRE5-LTR_OS 6427 0.0057 (17/2995) 0 * Os_TE_773855 Os_TE_773853 Chr1 3058356 3058357 + RETROSAT4_LTR 13504 0.0131 (39/2973) 0 * Os_TE_773852 Os_TE_773852 Chr1 3058352 3058351 - SZ-35LTR 3853 0.0134 (40/2978) 0 * Os_TE_773853 Os_TE_773849 Chr1 3057231 3057232 + COPI2_LTR 4733 0.0003 (1/2979) 0 * Os_TE_773848 Os_TE_773848 Chr1 3057227 3057226 - COPI2_LTR 4733 0.0003 (1/2982) 0 * Os_TE_773849 Os_TE_773843 Chr1 3053227 3053228 - ORSiTETNOOT00134 607 0.0018 (5/2834) 0 * Os_TE_773842 Os_TE_773842 Chr1 3053220 3053219 + TWIF 586 0.0056 (16/2840) 0 * Os_TE_773843 Os_TE_773840 Chr1 3053154 3053153 + TWIF 586 0.0004 (1/2841) 0 * * Os_TE_773822 Chr1 3034745 3034746 - COPIA2-LTR_OS 6433 0.0124 (37/2990) 0 * Os_TE_773821 Os_TE_773821 Chr1 3034741 3034740 + COPIA2-LTR_OS 6433 0.0124 (37/2993) 0 * Os_TE_773822 Os_TE_773818 Chr1 3033860 3033861 - OSTE24 683 0.0003 (1/2982) 0 * * Os_TE_773816 Chr1 3032615 3032614 - COPI2_LTR 4733 0.0003 (1/2997) 0 * * Os_TE_773805 Chr1 3028405 3028133 + COPI1_LTR 4721 0.4156 (1243/2991) 1 Solo_LTR Os_TE_773802 Os_TE_773802 Chr1 3028133 3028405 - COPI1_LTR 4721 0.4188 (1253/2992) 1 Solo_LTR Os_TE_773805 Os_TE_773794 Chr1 3025170 3020388 - RETROSAT4_LTR 13504 0.0422 (126/2989) 1 Solo_LTR * Os_TE_773792 Chr1 3024156 3024157 - SZ-48LTR 3632 0.1861 (553/2972) 0 * * Os_TE_773790 Chr1 3024058 3020388 + RETROSAT4_LTR 13504 0.0423 (125/2954) 1 Solo_LTR * Os_TE_773785 Chr1 3019677 3019678 - RIRE2_LTR 11306 0.0074 (22/2976) 0 * Os_TE_773784 Os_TE_773784 Chr1 3019673 3019672 + RIRE2_LTR 11306 0.0074 (22/2978) 0 * Os_TE_773785 Os_TE_773777 Chr1 3018956 3018957 - SZ-35LTR 3853 0.0114 (34/2989) 0 * Os_TE_773776 Os_TE_773776 Chr1 3018952 3018951 + RETROSAT4_LTR 13504 0.0097 (29/2986) 0 * Os_TE_773777 Os_TE_773747 Chr1 3001305 3002755 + ORSgTEMT00300069 394 0.1167 (345/2957) 1 Intact * Os_TE_773743 Chr1 3000522 3000523 - ORSgTEMT00502194 153 0.8910 (2666/2992) 0 * * Os_TE_773734 Chr1 2997976 2989452 - MuDR3_OS 8604 0.0405 (119/2936) 1 Intact Os_TE_773724 Os_TE_773724 Chr1 2989452 2997973 - MuDR3_OS 8604 0.0418 (122/2922) 1 Intact Os_TE_773734 Os_TE_773723 Chr1 2989401 2989402 + MERMITE18E 1528 0.0603 (179/2968) 0 * Os_TE_773722 Os_TE_773722 Chr1 2989397 2989396 + MERMITE18E 1528 0.0512 (148/2889) 0 * Os_TE_773723 Os_TE_773718 Chr1 2982381 2982382 - MuDR4_OS 7610 0.0067 (20/2993) 0 * Os_TE_773717 Os_TE_773717 Chr1 2982372 2982371 - MuDR4_OS 7610 0.0070 (21/2994) 0 * Os_TE_773718 Os_TE_773716 Chr1 2982175 2982176 + OSTONOR1_LTR 6440 0.0003 (1/2998) 0 * Os_TE_773715 Os_TE_773715 Chr1 2982171 2982170 - ORSiTERT00100062 5674 0.0003 (1/2996) 0 * Os_TE_773716 Os_TE_773704 Chr1 2981237 2981238 - RIRE2_LTR 11306 0.0101 (29/2885) 0 * Os_TE_773703 Os_TE_773703 Chr1 2981233 2981232 - ORSgTERT00201216 11284 0.0087 (25/2889) 0 * Os_TE_773704 Os_TE_773699 Chr1 2969555 2969556 - MERMITEA 1710 0.0629 (187/2972) 0 * * Os_TE_773694 Chr1 2965868 2965869 - OSTE9 421 0.0040 (11/2745) 0 * * Os_TE_773691 Chr1 2963033 2963034 - RIRE2_LTR 11306 0.0003 (1/2997) 0 * * Os_TE_773688 Chr1 2962356 2962357 - OSR3_LTR 5201 0.0071 (21/2974) 0 * * Os_TE_773680 Chr1 2959286 2959285 + ORSgTEMT00300069 394 0.0067 (20/2991) 0 * Os_TE_773679 Os_TE_773679 Chr1 2959221 2959222 - ORSgTEMT00300141 415 0.0063 (19/2994) 0 * Os_TE_773680 Os_TE_773676 Chr1 2956264 2956263 + TRUNCATOR 2918 0.6205 (1738/2801) 0 * * Os_TE_773610 Chr1 2924814 2924815 - TOS17LTR 138 0.0003 (1/2989) 0 * Os_TE_773609 Os_TE_773609 Chr1 2924810 2924809 + TOS17LTR 138 0.0003 (1/2993) 0 * Os_TE_773610 Os_TE_773605 Chr1 2921639 2921640 + STOWAWAY51_OS 246 0.0003 (1/2993) 0 * * Os_TE_773591 Chr1 2908467 2919980 + TRUNCATOR 2918 0.1561 (462/2959) 1 Intact * Os_TE_773584 Chr1 2907806 2907807 - ORSgTERT00201216 11284 0.0067 (20/2999) 0 * * Os_TE_773582 Chr1 2907416 2907417 + COPIA2-LTR_OS 6433 0.0003 (1/2972) 0 * * Os_TE_773577 Chr1 2906690 2906691 + RETROSAT4_LTR 13504 0.1062 (303/2852) 0 * Os_TE_773576 Os_TE_773576 Chr1 2906686 2906685 - RETROSAT4_LTR 13504 0.1139 (336/2950) 0 * Os_TE_773577 Os_TE_773549 Chr1 2896764 2896765 + AMYLTP 383 0.3163 (938/2966) 0 * Os_TE_773548 Os_TE_773548 Chr1 2896757 2896756 - AMYLTP 383 0.3276 (973/2970) 0 * Os_TE_773549 Os_TE_773546 Chr1 2896099 2896100 + STOWAWAY21_OS 243 0.0038 (11/2879) 0 * * Os_TE_773545 Chr1 2895838 2895839 - MPING 430 0.0003 (1/2884) 0 * Os_TE_773544 Os_TE_773544 Chr1 2895836 2895835 + MPING 430 0.0004 (1/2581) 0 * Os_TE_773545 Os_TE_773542 Chr1 2895543 2895544 + ORSgTEMT00100949 340 0.8342 (2475/2967) 0 * * Os_TE_773540 Chr1 2895342 2895341 + OLO24 345 0.0003 (1/2933) 0 * * Os_TE_773537 Chr1 2892882 2892881 - TRUNCATOR 2918 0.0013 (4/2971) 0 * * Os_TE_773534 Chr1 2892553 2892552 - DS-RICE2N 613 0.1156 (343/2967) 0 * * Os_TE_773533 Chr1 2892090 2892091 - RIRE3_LTR 12054 0.1173 (348/2966) 0 * * Os_TE_773526 Chr1 2887664 2887305 + ORSgTEMT00502437 145 0.1821 (519/2850) 1 Intact Os_TE_773521 Os_TE_773521 Chr1 2887296 2887664 + ORSgTEMT00500512 153 0.1713 (512/2989) 1 Intact Os_TE_773526 Os_TE_773509 Chr1 2883112 2883111 - ORSgTEMT00502257 142 0.0594 (32/539) 0 * * Os_TE_773503 Chr1 2882726 2882865 + ORSgTEMT00500201 140 0.3283 (527/1605) 1 Intact * Os_TE_773495 Chr1 2877378 2877377 + STOWAWAY27_OS 89 0.8317 (2456/2953) 0 * Os_TE_773494 Os_TE_773494 Chr1 2877376 2877377 + STOWAWAY50_OS 174 0.8306 (2462/2964) 0 * Os_TE_773495 Os_TE_773487 Chr1 2873465 2873464 + UNIQUE 158 0.8352 (2488/2979) 0 * * Os_TE_773472 Chr1 2862733 2862734 + SZ-17_LTR 3387 0.0007 (2/2994) 0 * Os_TE_773471 Os_TE_773471 Chr1 2862729 2862728 - SZ-17_LTR 3387 0.0012 (2/1707) 0 * Os_TE_773472 Os_TE_773437 Chr1 2846277 2846511 - ORSgTETNOOT01219 231 0.7170 (1893/2640) 1 Intact * Os_TE_773436 Chr1 2846183 2846182 - ORSgTEMT01701302 154 0.3701 (1098/2967) 0 * * Os_TE_773434 Chr1 2846056 2846055 - ORSgTEMT00900760 239 0.3506 (1017/2901) 0 * * Os_TE_773427 Chr1 2838897 2838898 - MERMITEJ 1498 0.2581 (770/2983) 0 * Os_TE_773426 Os_TE_773426 Chr1 2838892 2838891 + MERMITED 1572 0.2525 (752/2978) 0 * Os_TE_773427 Os_TE_773423 Chr1 2837622 2837623 + CASTAWAY 364 0.0017 (5/2975) 0 * * Os_TE_773416 Chr1 2830222 2830223 + HARB-1_OS 5166 0.0008 (2/2621) 0 * * Os_TE_773415 Chr1 2830159 2830158 + NDNA1TNA_OS 334 0.1735 (454/2616) 0 * * Os_TE_773409 Chr1 2823513 2823514 + ORSgTETNOOT00317 139 0.6779 (1145/1689) 0 * * Os_TE_773408 Chr1 2823371 2823370 - NDNA1TNA_OS 334 0.0234 (51/2178) 0 * * Os_TE_773402 Chr1 2821149 2821148 + MERMITEA 1710 0.4292 (1116/2600) 0 * * Os_TE_773400 Chr1 2820981 2820980 - MUDRN4_OS 332 0.0011 (3/2835) 0 * * Os_TE_773398 Chr1 2819922 2819921 - ORSgTEMT00501126 153 0.3973 (1122/2824) 0 * * Os_TE_773396 Chr1 2819439 2819440 - ORSgTETNOOT00355 222 0.4102 (1162/2833) 0 * * Os_TE_773390 Chr1 2815140 2815141 + ORSgTEMT01701115 144 0.7398 (2189/2959) 0 * * Os_TE_773388 Chr1 2811074 2811075 + ORSgTEMT00500852 140 0.0005 (1/1940) 0 * * Os_TE_773385 Chr1 2809873 2809734 + ORSgTEMT00500201 140 0.6308 (1888/2993) 1 Intact * Os_TE_773382 Chr1 2809521 2809670 + ORSgTEMT00501786 149 0.6265 (1870/2985) 1 Intact * Os_TE_773378 Chr1 2809401 2809080 + CASLET 354 0.6258 (1868/2985) 1 Intact Os_TE_773373 Os_TE_773373 Chr1 2809064 2809397 - CASLET 354 0.6258 (1871/2990) 1 Intact Os_TE_773378 Os_TE_773366 Chr1 2805217 2805216 - INDITTO 263 0.0919 (175/1905) 0 * * Os_TE_773341 Chr1 2796513 2796514 + MPING 430 0.0007 (2/2987) 0 * Os_TE_773340 Os_TE_773340 Chr1 2796511 2796510 - MPING 430 0.0007 (2/2986) 0 * Os_TE_773341 Os_TE_773339 Chr1 2796437 2796438 + ORSgTETNOOT00908 242 0.0567 (169/2978) 0 * * Os_TE_773320 Chr1 2786000 2786001 + NDNA1TNA_OS 334 0.3827 (1116/2916) 0 * * Os_TE_773310 Chr1 2783786 2784124 + ORSgTEMT00900388 252 0.6201 (1448/2335) -1 Intact * Os_TE_773305 Chr1 2778657 2778656 + ORSgTEMT01700681 154 0.3814 (1079/2829) 0 * * Os_TE_773302 Chr1 2777881 2777882 - RIREX_LTR 8828 0.0003 (1/2990) 0 * Os_TE_773301 Os_TE_773301 Chr1 2777877 2777876 + RIREX_LTR 8828 0.0003 (1/2990) 0 * Os_TE_773302 Os_TE_773295 Chr1 2775921 2774643 + OSTE33 1012 0.0491 (147/2992) 1 Intact Os_TE_773291 Os_TE_773291 Chr1 2774643 2775921 + OSTE33 1012 0.0488 (146/2994) 1 Intact Os_TE_773295 Os_TE_773268 Chr1 2762783 2762784 + OSR3_LTR 5201 0.0074 (22/2993) 0 * Os_TE_773267 Os_TE_773267 Chr1 2762779 2762778 - OSR3_LTR 5201 0.0073 (22/2996) 0 * Os_TE_773268 Os_TE_773266 Chr1 2762079 2762080 - LINE-7_OS 7090 0.3323 (987/2970) 0 * * Os_TE_773263 Chr1 2757846 2757847 + MuDR2_OS 6770 0.0154 (46/2985) 0 * Os_TE_773262 Os_TE_773262 Chr1 2757838 2757837 - MuDR2_OS 6770 0.0167 (50/2994) 0 * Os_TE_773263 Os_TE_773213 Chr1 2741073 2741271 - COWARD 200 0.7606 (2253/2962) 1 Intact * Os_TE_773190 Chr1 2729273 2729272 + ORSiCMCM00100019 2717 0.0030 (9/2994) 0 * * Os_TE_773182 Chr1 2720700 2720699 - ECR 394 0.0071 (20/2829) 0 * * Os_TE_773172 Chr1 2713056 2712819 - ORSgTEMT00900095 238 0.8122 (653/804) 1 Intact * Os_TE_773169 Chr1 2712043 2711910 - ORSgTEMT00501652 141 0.8768 (2626/2995) 1 Intact * Os_TE_773166 Chr1 2711841 2711842 - RIREX_LTR 8828 0.0003 (1/2997) 0 * Os_TE_773165 Os_TE_773165 Chr1 2711837 2711836 + RIREX_LTR 8828 0.0003 (1/2996) 0 * Os_TE_773166 Os_TE_773160 Chr1 2706948 2706947 - ORSgTEMT00500773 153 0.1359 (405/2980) 0 * * Os_TE_773158 Chr1 2705507 2705506 - INDITTO 263 0.0030 (9/2960) 0 * * Os_TE_773135 Chr1 2697103 2697104 + MuDR4_OS 7610 0.3399 (983/2892) 0 * * Os_TE_773134 Chr1 2696290 2696291 - MPING 430 0.0003 (1/2982) 0 * Os_TE_773133 Os_TE_773133 Chr1 2696288 2696287 + MPING 430 0.0003 (1/2986) 0 * Os_TE_773134 Os_TE_773126 Chr1 2691358 2691359 + COPIA2-LTR_OS 6433 0.0003 (1/2996) 0 * Os_TE_773125 Os_TE_773125 Chr1 2691354 2691353 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_773126 Os_TE_773116 Chr1 2685767 2685768 - SZ-55_LTR 10318 0.0017 (5/2986) 0 * Os_TE_773115 Os_TE_773115 Chr1 2685763 2685762 + SZ-55_LTR 10318 0.0017 (5/2985) 0 * Os_TE_773116 Os_TE_773113 Chr1 2685529 2685528 + SZ-55_LTR 10318 0.0241 (72/2988) 0 * * Os_TE_773107 Chr1 2685104 2685105 - SZ-55_LTR 10318 0.0030 (9/2998) 0 * * Os_TE_773101 Chr1 2681137 2681138 + MPING 430 0.0003 (1/2982) 0 * Os_TE_773100 Os_TE_773100 Chr1 2681135 2681134 - MPING 430 0.0003 (1/2974) 0 * Os_TE_773101 Os_TE_773090 Chr1 2676354 2676355 + RPO_OS 1983 0.0007 (2/2814) 0 * * Os_TE_773083 Chr1 2671549 2671548 - ORSiTERTOOT00333 4719 0.0003 (1/2968) 0 * * Os_TE_773069 Chr1 2664107 2664108 - RIREX_LTR 8828 0.0010 (3/2993) 0 * * Os_TE_773063 Chr1 2663385 2663384 - RETRO2A_LTR 12895 0.0675 (202/2994) 0 * * Os_TE_773029 Chr1 2655647 2655646 + OSMU5 4881 0.0034 (10/2983) 0 * * Os_TE_773028 Chr1 2653064 2653065 + RIRE2_LTR 11306 0.0724 (217/2997) 0 * Os_TE_773027 Os_TE_773027 Chr1 2653060 2653059 - RIRE2_LTR 11306 0.0744 (223/2999) 0 * Os_TE_773028 Os_TE_773026 Chr1 2652936 2652937 + RIRE3A_LTR 10580 0.0650 (193/2968) 0 * * Os_TE_773000 Chr1 2644689 2644690 - MuDR3_OS 8604 0.1471 (429/2916) 0 * Os_TE_772999 Os_TE_772999 Chr1 2644680 2644679 - MuDR3_OS 8604 0.1621 (465/2868) 0 * Os_TE_773000 Os_TE_772991 Chr1 2640879 2640878 - MPING 430 0.0003 (1/2868) 0 * * Os_TE_772975 Chr1 2632741 2632742 + SZ-64B_LTR 8424 0.0023 (6/2580) 0 * Os_TE_772974 Os_TE_772974 Chr1 2632737 2632736 - SZ-64B_LTR 8424 0.0023 (6/2578) 0 * Os_TE_772975 Os_TE_772968 Chr1 2631642 2631641 - SZ-40LTR 2465 0.0022 (4/1856) 0 * * Os_TE_772966 Chr1 2631438 2631437 + ORSiCMCM00100019 2717 0.0760 (146/1922) 0 * * Os_TE_772939 Chr1 2624958 2624957 - ORSgTEMT02400179 221 0.0004 (1/2570) 0 * Os_TE_772938 Os_TE_772938 Chr1 2624955 2624956 + ORSgTEMT02400034 225 0.0004 (1/2558) 0 * Os_TE_772939 Os_TE_772932 Chr1 2624622 2624621 - RETRO2A_LTR 12895 0.2436 (611/2508) 0 * * Os_TE_772905 Chr1 2618574 2618573 - SZ-44LTR 1408 0.0004 (1/2582) 0 * * Os_TE_772897 Chr1 2614365 2614364 + OSR3_LTR 5201 0.1346 (403/2994) 0 * * Os_TE_772896 Chr1 2613556 2613557 - ORSgTETNOOT00754 253 0.0007 (2/2983) 0 * Os_TE_772895 Os_TE_772895 Chr1 2613554 2613553 + ORSgTETNOOT01834 251 0.0007 (2/2984) 0 * Os_TE_772896 Os_TE_772894 Chr1 2612756 2612757 + AMYLTP 383 0.0020 (6/2997) 0 * * Os_TE_772888 Chr1 2609128 2609129 + SC-8_LTR 4951 0.0020 (6/2987) 0 * * Os_TE_772878 Chr1 2597488 2597349 + ORSgTEMT00500201 140 0.7280 (2176/2989) 1 Intact Os_TE_772876 Os_TE_772876 Chr1 2597343 2597485 - ORSgTEMT00501356 145 0.7275 (2170/2983) 1 Intact Os_TE_772878 Os_TE_772867 Chr1 2594704 2594703 - ORSiTERT00400060 627 0.0007 (2/2984) 0 * * Os_TE_772866 Chr1 2593368 2593138 + ORSgTETNOOT01219 231 0.1110 (329/2964) 1 Intact Os_TE_772865 Os_TE_772865 Chr1 2593134 2593369 + ORSgTETNOOT00908 242 0.1139 (340/2986) 1 Intact Os_TE_772866 Os_TE_772862 Chr1 2589408 2589407 + ORSgTEMT00500201 140 0.2900 (866/2986) 0 * Os_TE_772861 Os_TE_772861 Chr1 2589406 2589407 - ORSgTEMT00500578 129 0.2935 (868/2957) 0 * Os_TE_772862 Os_TE_772848 Chr1 2579752 2579751 - ORSgTEMT01400015 213 0.3416 (1023/2995) 0 * Os_TE_772847 Os_TE_772847 Chr1 2579744 2579745 - ORSgTEMT01400019 216 0.3354 (1004/2993) 0 * Os_TE_772848 Os_TE_772840 Chr1 2578261 2578262 + TWIFB1 3737 0.0004 (1/2652) 0 * * Os_TE_772836 Chr1 2576028 2575905 + ORSiTERT00400066 124 0.5242 (1569/2993) 1 Intact Os_TE_772835 Os_TE_772835 Chr1 2575905 2576028 - ORSiTERT00400066 124 0.5279 (1582/2997) 1 Intact Os_TE_772836 Os_TE_772831 Chr1 2574800 2574799 + ORSgTETNOOT01668 244 0.0021 (6/2896) 0 * * Os_TE_772829 Chr1 2572809 2572808 - SC-5 3770 0.0007 (2/2989) 0 * * Os_TE_772828 Chr1 2572076 2572077 + ORSgTEMT01600517 231 0.4823 (1427/2959) 0 * * Os_TE_772826 Chr1 2571925 2571924 - ORSiTERTOOT00332 5395 0.0004 (1/2781) 0 * * Os_TE_772821 Chr1 2565506 2565507 + OSTONOR1_LTR 6440 0.2579 (768/2978) 0 * Os_TE_772820 Os_TE_772820 Chr1 2565502 2565501 - OSTONOR1_LTR 6440 0.2594 (774/2984) 0 * Os_TE_772821 Os_TE_772817 Chr1 2564902 2564903 + ORSiTERTOOT00381 4988 0.0003 (1/2992) 0 * Os_TE_772816 Os_TE_772816 Chr1 2564898 2564897 - SC-8_LTR 4951 0.0003 (1/2990) 0 * Os_TE_772817 Os_TE_772791 Chr1 2554017 2554016 - MIDWAY 985 0.0108 (20/1857) 0 * * Os_TE_772773 Chr1 2545755 2545756 - RIREX_LTR 8828 0.0914 (207/2266) 0 * Os_TE_772772 Os_TE_772772 Chr1 2545751 2545750 + RIREX_LTR 8828 0.0926 (210/2268) 0 * Os_TE_772773 Os_TE_772739 Chr1 2533568 2533569 + RETRO2_LTR 12874 0.1173 (341/2908) 0 * * Os_TE_772728 Chr1 2530814 2530433 + TYPEU2 382 0.6026 (1498/2486) 1 Intact * Os_TE_772700 Chr1 2520031 2520030 + ORSiTERTOOT00033 4884 0.0007 (1/1496) 0 * * Os_TE_772672 Chr1 2502496 2502497 - LINE-7_OS 7090 0.4079 (943/2312) 0 * * Os_TE_772669 Chr1 2498175 2498174 + JOUZHENA 607 0.7471 (452/605) 0 * * Os_TE_772611 Chr1 2478851 2478852 + INDITTO 263 0.0724 (157/2168) 0 * Os_TE_772610 Os_TE_772610 Chr1 2478849 2478848 - INDITTO 263 0.0679 (148/2180) 0 * Os_TE_772611 Os_TE_772609 Chr1 2478299 2478298 + TRUNCATOR 2918 0.1957 (430/2197) 0 * Os_TE_772608 Os_TE_772608 Chr1 2478298 2478299 - TRUNCATOR 2918 0.1946 (428/2199) 0 * Os_TE_772609 Os_TE_772607 Chr1 2477885 2477886 + GYPSY-A_LTR 8951 0.0009 (2/2213) 0 * Os_TE_772606 Os_TE_772606 Chr1 2477881 2477880 - GYPSY-A_LTR 8951 0.0009 (2/2215) 0 * Os_TE_772607 Os_TE_772564 Chr1 2459374 2459373 + ORSgTEMT00502363 147 0.5335 (1354/2538) 0 * * Os_TE_772560 Chr1 2458849 2459362 + CLOUD-4 520 0.6218 (786/1264) 1 Intact * Os_TE_772555 Chr1 2450549 2450550 - MERMITE18B 1306 0.0117 (10/856) 0 * * Os_TE_772519 Chr1 2434762 2434763 - MUDRN3_OS 903 0.5712 (1015/1777) 0 * Os_TE_772518 Os_TE_772518 Chr1 2434754 2434753 + MUDRN2_OS 756 0.4906 (837/1706) 0 * Os_TE_772519 Os_TE_772480 Chr1 2423560 2423798 - ORSgTEMT01601493 303 0.8131 (1875/2306) 1 Intact * Os_TE_772478 Chr1 2422745 2422746 - ZM13-1_OS 139 0.1894 (446/2355) 0 * * Os_TE_772476 Chr1 2421359 2421358 + OLO24 345 0.4201 (810/1928) 0 * * Os_TE_772467 Chr1 2414732 2414733 + CPSC4B_LTR 5343 0.1655 (413/2495) 0 * * Os_TE_772466 Chr1 2414080 2414081 + ORSgTETNOOT00908 242 0.0681 (145/2130) 0 * * Os_TE_772455 Chr1 2409708 2409707 - MuDR4_OS 7610 0.0708 (177/2499) 0 * * Os_TE_772449 Chr1 2407290 2407289 - TNR9 176 0.1314 (383/2915) 0 * * Os_TE_772446 Chr1 2405870 2405871 + SZ-54B_LTR 5183 0.0094 (27/2875) 0 * Os_TE_772445 Os_TE_772445 Chr1 2405866 2405865 - SZ-54B_LTR 5183 0.0090 (27/2987) 0 * Os_TE_772446 Os_TE_772441 Chr1 2401821 2401822 - TYPEU1 380 0.0532 (157/2951) 0 * Os_TE_772440 Os_TE_772440 Chr1 2401813 2401812 + TYPEU4 402 0.0547 (161/2944) 0 * Os_TE_772441 Os_TE_772431 Chr1 2398201 2398202 - OSMAR1 5265 0.0019 (5/2682) 0 * * Os_TE_772423 Chr1 2395332 2395331 + COWARD-3 221 0.0003 (1/2988) 0 * * Os_TE_772418 Chr1 2383648 2383135 + ORSgTEMT00901844 250 0.5885 (1735/2948) 1 Intact Os_TE_772410 Os_TE_772410 Chr1 2383131 2383611 + ORSgTEMT00901405 217 0.5688 (1700/2989) 1 Intact Os_TE_772418 Os_TE_772399 Chr1 2376208 2376209 - SC-4_LTR 5218 0.0003 (1/2995) 0 * Os_TE_772398 Os_TE_772398 Chr1 2376204 2376203 + SC-4_LTR 5218 0.0003 (1/2994) 0 * Os_TE_772399 Os_TE_772396 Chr1 2374303 2374302 + SPMLIKE 10989 0.0007 (2/2907) 0 * * Os_TE_772389 Chr1 2371535 2371534 - TYPEU1 380 0.2904 (848/2920) 0 * * Os_TE_772387 Chr1 2370131 2370132 + COPI2_LTR 4733 0.0010 (3/2997) 0 * * Os_TE_772383 Chr1 2368420 2368421 - ORSgTEMT00300160 419 0.0010 (3/2962) 0 * * Os_TE_772382 Chr1 2368336 2368337 + ORSgTETNOOT00032 218 0.0111 (33/2975) 0 * * Os_TE_772373 Chr1 2361143 2361144 - SZ-35LTR 3853 0.0020 (6/2986) 0 * * Os_TE_772367 Chr1 2356132 2356131 - ORSgTEMT02400179 221 0.1127 (328/2911) 0 * * Os_TE_772357 Chr1 2345492 2345491 + F569 228 0.0050 (15/2978) 0 * * Os_TE_772349 Chr1 2344209 2344208 - RETROSAT4_LTR 13504 0.1960 (582/2969) 0 * * Os_TE_772344 Chr1 2333903 2333680 - ORSgTEMT01600223 220 0.2050 (612/2985) 1 Intact Os_TE_772341 Os_TE_772341 Chr1 2333673 2333910 - ORSgTEMT01600639 228 0.2192 (620/2828) 1 Intact Os_TE_772344 Os_TE_772340 Chr1 2333393 2333392 + AMYLTP 383 0.0213 (21/987) 0 * * Os_TE_772339 Chr1 2333073 2333072 + OSTE19 162 0.7690 (2034/2645) 0 * * Os_TE_772338 Chr1 2332709 2332451 + ORSgTETNOOT02577 232 0.2081 (620/2979) 1 Intact * Os_TE_772331 Chr1 2330733 2330732 + SZ-55_LTR 10318 0.0003 (1/2989) 0 * * Os_TE_772330 Chr1 2329142 2329143 - SZ-48LTR 3632 0.0003 (1/2976) 0 * Os_TE_772329 Os_TE_772329 Chr1 2329138 2329137 + SZ-48LTR 3632 0.0003 (1/2983) 0 * Os_TE_772330 Os_TE_772326 Chr1 2327879 2327880 + MPING 430 0.0007 (2/2985) 0 * Os_TE_772325 Os_TE_772325 Chr1 2327877 2327876 - MPING 430 0.0007 (2/2981) 0 * Os_TE_772326 Os_TE_772322 Chr1 2326326 2326325 + MUDRN5_OS 374 0.0010 (3/2888) 0 * * Os_TE_772316 Chr1 2326124 2326123 - RETROSAT4_LTR 13504 0.0057 (17/2969) 0 * * Os_TE_772298 Chr1 2320884 2320885 - RETRO1_LTR 8314 0.0486 (144/2960) 0 * Os_TE_772297 Os_TE_772297 Chr1 2320880 2320879 + RETRO1_LTR 8314 0.0493 (146/2962) 0 * Os_TE_772298 Os_TE_772296 Chr1 2320010 2320009 + SNAP-OL3 189 0.0013 (4/2984) 0 * * Os_TE_772292 Chr1 2318497 2318498 + COPIA2-LTR_OS 6433 0.0037 (11/2955) 0 * Os_TE_772291 Os_TE_772291 Chr1 2318493 2318492 - COPIA2-LTR_OS 6433 0.0047 (14/2949) 0 * Os_TE_772292 Os_TE_772285 Chr1 2318127 2318126 + TYPEM 227 0.0023 (7/2987) 0 * * Os_TE_772259 Chr1 2306514 2306515 + MuDR3_OS 8604 0.7845 (2315/2951) 0 * * Os_TE_772253 Chr1 2296345 2296346 - COPI2_LTR 4733 0.0003 (1/2999) 0 * Os_TE_772252 Os_TE_772252 Chr1 2296341 2296340 + COPI2_LTR 4733 0.0003 (1/2999) 0 * Os_TE_772253 Os_TE_772247 Chr1 2293069 2293070 - SZ-22_LTR 4403 0.0020 (6/2927) 0 * * Os_TE_772212 Chr1 2286197 2286196 + STOWAWAY11_OS 292 0.0003 (1/2959) 0 * * Os_TE_772210 Chr1 2285007 2285008 - COPI2_LTR 4733 0.0003 (1/2983) 0 * Os_TE_772209 Os_TE_772209 Chr1 2285003 2285002 + COPI2_LTR 4733 0.0003 (1/2992) 0 * Os_TE_772210 Os_TE_772190 Chr1 2274798 2274799 + CASTAWAY 364 0.0858 (251/2925) 0 * * Os_TE_772188 Chr1 2273095 2273094 + STOWAWAY51_OS 246 0.0003 (1/2995) 0 * Os_TE_772187 Os_TE_772187 Chr1 2273089 2273090 + ORSgTEMT01601591 242 0.0003 (1/2996) 0 * Os_TE_772188 Os_TE_772177 Chr1 2261067 2261066 - DNAUN1_OS 408 0.0063 (18/2836) 0 * * Os_TE_772176 Chr1 2261022 2261023 + MPING 430 0.0004 (1/2652) 0 * Os_TE_772175 Os_TE_772175 Chr1 2261020 2261019 - MPING 430 0.0003 (1/2935) 0 * Os_TE_772176 Os_TE_772172 Chr1 2260257 2260258 - YOUREN 286 0.0037 (11/2970) 0 * Os_TE_772171 Os_TE_772171 Chr1 2260255 2260254 + YOUREN 286 0.0034 (10/2953) 0 * Os_TE_772172 Os_TE_772157 Chr1 2259090 2259089 + ORSgTETNOOT00908 242 0.0067 (20/2973) 0 * * Os_TE_772153 Chr1 2258985 2258986 + ORSiTEMT01700001 120 0.7509 (660/879) 0 * * Os_TE_772144 Chr1 2255717 2255718 - ORSgTEMT00600478 361 0.0007 (2/2790) 0 * * Os_TE_772141 Chr1 2255469 2255468 + NDNA1TNA_OS 334 0.0114 (11/961) 0 * * Os_TE_772121 Chr1 2243736 2243737 + OSTE14 885 0.6929 (2055/2966) 0 * * Os_TE_772120 Chr1 2243733 2243732 + OSTE14 885 0.7520 (2229/2964) 0 * * Os_TE_772115 Chr1 2242665 2242769 - DEBOAT 110 0.2673 (799/2989) 1 Intact * Os_TE_772108 Chr1 2241330 2241331 + F1275 157 0.7445 (2217/2978) 0 * * Os_TE_772106 Chr1 2239098 2239099 + RETROSAT2LTRA 3112 0.0323 (95/2940) 0 * Os_TE_772105 Os_TE_772105 Chr1 2239094 2239093 - RETROSAT3_LTR 11537 0.0348 (104/2986) 0 * Os_TE_772106 Os_TE_772104 Chr1 2237491 2232147 + SPMLIKE 10989 0.2653 (794/2993) 1 Intact * Os_TE_772094 Chr1 2231102 2231101 + SC-1_LTR 6888 0.0064 (19/2978) 0 * * Os_TE_772092 Chr1 2230919 2230918 - ORSgTERT00201216 11284 0.0037 (10/2711) -1 * Os_TE_772091 Os_TE_772091 Chr1 2230899 2230900 - RIRE2_LTR 11306 0.0034 (9/2620) -1 * Os_TE_772092 Os_TE_772082 Chr1 2229200 2229199 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * * Os_TE_772064 Chr1 2226358 2226357 - EnSpm-N1_OS 4256 0.0588 (176/2991) 0 * Os_TE_772063 Os_TE_772063 Chr1 2226354 2226355 + EnSpm-N1_OS 4256 0.0590 (176/2982) 0 * Os_TE_772064 Os_TE_772062 Chr1 2226001 2226002 - SZ-35LTR 3853 0.0220 (66/2994) 0 * Os_TE_772061 Os_TE_772061 Chr1 2225997 2225996 + RETROSAT4_LTR 13504 0.0207 (62/2991) 0 * Os_TE_772062 Os_TE_772059 Chr1 2224439 2224440 - CACTA-M 1129 0.0598 (179/2991) 0 * * Os_TE_772057 Chr1 2224214 2224213 + STOWAWAY51_OS 246 0.0003 (1/2974) 0 * * Os_TE_772042 Chr1 2213290 2213291 - MERMITE-17 2759 0.0017 (5/2967) 0 * * Os_TE_772037 Chr1 2209667 2209668 + RETRO2_LTR 12874 0.0609 (180/2957) 0 * Os_TE_772036 Os_TE_772036 Chr1 2209663 2209662 - RETRO1_LTR 8314 0.0598 (177/2958) 0 * Os_TE_772037 Os_TE_772035 Chr1 2209186 2209185 - STOWAWAY51_OS 246 0.0007 (2/2975) 0 * Os_TE_772034 Os_TE_772034 Chr1 2209180 2209181 + STOWAWAY51_OS 246 0.0007 (2/2974) 0 * Os_TE_772035 Os_TE_772026 Chr1 2206597 2206323 + STOWAWAY20_OS 278 0.3725 (1071/2875) 1 Intact Os_TE_772024 Os_TE_772024 Chr1 2206323 2206595 - STOWAWAY20_OS 278 0.3886 (1150/2959) 1 Intact Os_TE_772026 Os_TE_772019 Chr1 2201554 2201553 + ORSgTETNOOT00908 242 0.0078 (23/2931) 0 * * Os_TE_772017 Chr1 2201342 2201343 - COPI2_LTR 4733 0.0003 (1/2922) 0 * * Os_TE_772014 Chr1 2200854 2200853 + ORSgTEMT01602188 240 0.6121 (1774/2898) 0 * Os_TE_772013 Os_TE_772013 Chr1 2200846 2200847 - TREP215 239 0.6226 (1821/2925) 0 * Os_TE_772014 Os_TE_772012 Chr1 2200551 2180000 + RIREX_LTR 8828 0.1862 (549/2949) 1 Intact Os_TE_772008 Os_TE_772008 Chr1 2180000 2200551 - RIREX_LTR 8828 0.1884 (547/2904) 1 Intact Os_TE_772012 Os_TE_772007 Chr1 2179942 2179943 + NDNA1TNA_OS 334 0.0578 (171/2958) 0 * Os_TE_772006 Os_TE_772006 Chr1 2179940 2179939 - NDNA1TNA_OS 334 0.0577 (167/2895) 0 * Os_TE_772007 Os_TE_772005 Chr1 2179878 2179879 - HARB-1_OS 5166 0.0024 (7/2964) 0 * Os_TE_772004 Os_TE_772004 Chr1 2179876 2179875 + HARB-1_OS 5166 0.0024 (7/2965) 0 * Os_TE_772005 Os_TE_772002 Chr1 2178235 2178236 + COPI2_LTR 4733 0.0003 (1/2957) 0 * * Os_TE_771994 Chr1 2176416 2176417 - RETRO1_LTR 8314 0.0003 (1/2995) 0 * Os_TE_771993 Os_TE_771993 Chr1 2176412 2176411 + RETRO1_LTR 8314 0.0003 (1/2991) 0 * Os_TE_771994 Os_TE_771986 Chr1 2175113 2175114 - ORSgTEMT00600085 364 0.0007 (2/2924) 0 * Os_TE_771985 Os_TE_771985 Chr1 2175111 2175110 + ORSgTEMT00600502 360 0.0007 (2/2952) 0 * Os_TE_771986 Os_TE_771984 Chr1 2174381 2174382 - OLO24 345 0.0622 (182/2928) 0 * Os_TE_771983 Os_TE_771983 Chr1 2174379 2174378 + OLO24 345 0.0639 (180/2815) 0 * Os_TE_771984 Os_TE_771978 Chr1 2173878 2173877 + ORSgTETNOOT00032 218 0.0486 (143/2942) 0 * * Os_TE_771967 Chr1 2170946 2170947 + ORSiTETN00100011 676 0.3764 (1122/2981) 0 * * Os_TE_771928 Chr1 2158572 2158573 + COPI2_LTR 4733 0.0003 (1/2972) 0 * Os_TE_771927 Os_TE_771927 Chr1 2158568 2158567 - COPI2_LTR 4733 0.0003 (1/2974) 0 * Os_TE_771928 Os_TE_771919 Chr1 2155882 2155883 - RIREX_LTR 8828 0.0017 (5/2990) 0 * Os_TE_771918 Os_TE_771918 Chr1 2155878 2155877 + RIREX_LTR 8828 0.0017 (5/2990) 0 * Os_TE_771919 Os_TE_771917 Chr1 2155318 2155319 + COPIA2-LTR_OS 6433 0.0023 (7/2993) 0 * * Os_TE_771914 Chr1 2153051 2152794 - ORSgTEMT00901849 250 0.8338 (2483/2978) 1 Intact * Os_TE_771902 Chr1 2151795 2151796 - SZ-48LTR 3632 0.2373 (703/2963) 0 * Os_TE_771901 Os_TE_771901 Chr1 2151791 2151790 + SZ-48LTR 3632 0.2332 (688/2950) 0 * Os_TE_771902 Os_TE_771896 Chr1 2150411 2150412 + ORSgTERTOOT00009 12852 0.0030 (9/2995) 0 * Os_TE_771895 Os_TE_771895 Chr1 2150407 2150406 - RETRO2_LTR 12874 0.0007 (2/2986) 0 * Os_TE_771896 Os_TE_771889 Chr1 2147179 2147178 + ORSgTETNOOT01225 240 0.3844 (1146/2981) 0 * * Os_TE_771876 Chr1 2144771 2144772 - MIDWAY 985 0.0010 (2/1936) 0 * * Os_TE_771875 Chr1 2143672 2143673 - ORSgTEMT00501610 129 0.3808 (1140/2994) 0 * * Os_TE_771864 Chr1 2140291 2140164 - STOWAWAY47_OS 148 0.5934 (1347/2270) 1 Intact * Os_TE_771860 Chr1 2134288 2134289 - ORSgTEMT00501568 147 0.3839 (1141/2972) 0 * Os_TE_771859 Os_TE_771859 Chr1 2134287 2134286 + ORSgTEMT00500560 148 0.3844 (1140/2966) 0 * Os_TE_771860 Os_TE_771849 Chr1 2130245 2130014 + ORSgTEMT01600691 229 0.6531 (1911/2926) 1 Intact Os_TE_771848 Os_TE_771848 Chr1 2130003 2130243 - ORSgTEMT01600079 232 0.6260 (1865/2979) 1 Intact Os_TE_771849 Os_TE_771839 Chr1 2128658 2128659 - MuDR2_OS 6770 0.0012 (3/2528) 0 * Os_TE_771838 Os_TE_771838 Chr1 2128649 2128648 + MuDR2_OS 6770 0.0010 (3/2908) 0 * Os_TE_771839 Os_TE_771821 Chr1 2124634 2124635 + COPI2_LTR 4733 0.0010 (3/2969) 0 * Os_TE_771820 Os_TE_771820 Chr1 2124630 2124629 - COPI2_LTR 4733 0.0011 (3/2729) 0 * Os_TE_771821 Os_TE_771819 Chr1 2124334 2124213 + ORSgTEMT01700637 157 0.6329 (1888/2983) 1 Intact Os_TE_771818 Os_TE_771818 Chr1 2124200 2124333 - ORSgTEMT01702039 162 0.6323 (1893/2994) 1 Intact Os_TE_771819 Os_TE_771815 Chr1 2124020 2124019 - ORSgTEMT00500108 152 0.3640 (1073/2948) 0 * * Os_TE_771814 Chr1 2123897 2123898 + OSTE33 1012 0.3618 (1071/2960) 0 * * Os_TE_771808 Chr1 2123325 2123610 - ORSgTEMT00101019 331 0.6361 (1874/2946) 1 Intact * Os_TE_771806 Chr1 2120113 2120114 + INDITTO 263 0.0033 (10/2990) 0 * Os_TE_771805 Os_TE_771805 Chr1 2120111 2120110 - INDITTO 263 0.0033 (10/2988) 0 * Os_TE_771806 Os_TE_771804 Chr1 2119371 2119139 - STOWAWAY9_OS 235 0.6291 (1847/2936) 1 Intact Os_TE_771801 Os_TE_771801 Chr1 2119139 2119368 + STOWAWAY9_OS 235 0.6261 (1837/2934) 1 Intact Os_TE_771804 Os_TE_771800 Chr1 2119073 2119074 - INDITTO 263 0.1100 (322/2927) 0 * Os_TE_771799 Os_TE_771799 Chr1 2119071 2119070 + INDITTO 263 0.1080 (316/2925) 0 * Os_TE_771800 Os_TE_771798 Chr1 2119005 2119006 - INDITTO 263 0.0010 (3/2952) 0 * Os_TE_771797 Os_TE_771797 Chr1 2119003 2119002 - ORSgTETNOOT02417 265 0.0011 (3/2803) 0 * Os_TE_771798 Os_TE_771795 Chr1 2118909 2118908 - ORSgTEMT01600152 226 0.0003 (1/2974) 0 * * Os_TE_771793 Chr1 2118777 2118778 + MPING 430 0.0016 (3/1907) 0 * Os_TE_771792 Os_TE_771792 Chr1 2118775 2118774 - MPING 430 0.0010 (3/2955) 0 * Os_TE_771793 Os_TE_771791 Chr1 2118767 2118766 - ORSgTEMT00502478 130 0.3673 (1071/2916) 0 * Os_TE_771790 Os_TE_771790 Chr1 2118762 2118763 + ORSgTEMT00500476 150 0.3787 (1119/2955) 0 * Os_TE_771791 Os_TE_771784 Chr1 2118229 2118702 - ORSgTEMT00900622 250 0.6293 (1879/2986) 1 Intact * Os_TE_771781 Chr1 2117977 2117976 + ORSgTEMT01602181 239 0.3855 (1153/2991) 0 * Os_TE_771780 Os_TE_771780 Chr1 2117974 2117975 - ORSgTEMT01601768 238 0.3789 (1130/2982) 0 * Os_TE_771781 Os_TE_771779 Chr1 2117824 2117825 + F770 284 0.0007 (2/2976) 0 * * Os_TE_771766 Chr1 2115978 2115979 - TRUNCATOR 2918 0.0647 (193/2985) 0 * * Os_TE_771765 Chr1 2115067 2115068 - COPIA3-LTR_OS 5061 0.0017 (5/2981) 0 * Os_TE_771764 Os_TE_771764 Chr1 2115063 2115062 + COPIA3-LTR_OS 5061 0.0017 (5/2975) 0 * Os_TE_771765 Os_TE_771755 Chr1 2112817 2112818 - ORSgTEMT00700002 381 0.0003 (1/2961) 0 * * Os_TE_771750 Chr1 2108662 2108663 - LINE-7_OS 7090 0.0431 (129/2993) 0 * * Os_TE_771747 Chr1 2108227 2108228 + SZ-9LTR 965 0.0027 (8/2981) 0 * Os_TE_771746 Os_TE_771746 Chr1 2108223 2108222 - SZ-9LTR 965 0.0027 (8/2987) 0 * Os_TE_771747 Os_TE_771728 Chr1 2105886 2105887 + INDITTO 263 0.0043 (12/2762) 0 * * Os_TE_771727 Chr1 2105883 2105882 - ORSgTETNOOT02565 240 0.0428 (128/2988) 0 * * Os_TE_771725 Chr1 2105387 2105388 - INDITTO 263 0.0438 (131/2992) 0 * * Os_TE_771724 Chr1 2104876 2104875 + SINE1OS 127 0.0584 (168/2879) 0 * * Os_TE_771719 Chr1 2103688 2103689 - SZ-48LTR 3632 0.0007 (2/2988) 0 * Os_TE_771718 Os_TE_771718 Chr1 2103684 2103683 + SZ-48LTR 3632 0.0007 (2/2991) 0 * Os_TE_771719 Os_TE_771717 Chr1 2103523 2103524 - ORSgTEMT00900099 250 0.0451 (134/2969) 0 * * Os_TE_771711 Chr1 2097914 2097915 + INDITTO 263 0.0060 (18/2981) 0 * Os_TE_771710 Os_TE_771710 Chr1 2097912 2097911 - INDITTO 263 0.0060 (18/2991) 0 * Os_TE_771711 Os_TE_771709 Chr1 2097872 2097873 - INDITTO 263 0.1643 (492/2995) 0 * Os_TE_771708 Os_TE_771708 Chr1 2097870 2097869 + INDITTO 263 0.1658 (496/2992) 0 * Os_TE_771709 Os_TE_771706 Chr1 2096699 2096698 - ORSgTEMT00900892 250 0.0211 (63/2979) 0 * Os_TE_771705 Os_TE_771705 Chr1 2096695 2096696 + ORSgTEMT00901844 250 0.0215 (64/2975) 0 * Os_TE_771706 Os_TE_771695 Chr1 2090973 2090974 + RETROSAT4_LTR 13504 0.0357 (90/2520) 0 * Os_TE_771694 Os_TE_771694 Chr1 2090969 2090968 - SZ-35LTR 3853 0.1359 (393/2892) 0 * Os_TE_771695 Os_TE_771690 Chr1 2089005 2089004 - ORSgTEMT01601432 239 0.0007 (2/2997) 0 * * Os_TE_771682 Chr1 2080016 2080015 - COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * * Os_TE_771675 Chr1 2071536 2071537 + STOWAWAY8_OS 259 0.0272 (81/2978) 0 * * Os_TE_771674 Chr1 2070575 2070576 + RETROSAT4_LTR 13504 0.0960 (286/2980) 0 * Os_TE_771673 Os_TE_771673 Chr1 2070571 2070570 - SZ-35LTR 3853 0.1036 (300/2896) 0 * Os_TE_771674 Os_TE_771669 Chr1 2068132 2068131 - COPI2_LTR 4733 0.0003 (1/2987) 0 * * Os_TE_771646 Chr1 2062383 2062384 + ORSiTERTOOT00028 8600 0.0007 (2/2991) 0 * * Os_TE_771642 Chr1 2059325 2059326 - COWARD-3 221 0.0063 (19/2996) 0 * * Os_TE_771640 Chr1 2057894 2057893 + ORSgTETNOOT00032 218 0.0593 (176/2966) 0 * * Os_TE_771636 Chr1 2054898 2054740 - OSTE19 162 0.3525 (944/2678) 1 Intact Os_TE_771635 Os_TE_771635 Chr1 2054742 2054895 + WUWU 113 0.3133 (931/2972) 1 Intact Os_TE_771636 Os_TE_771633 Chr1 2053304 2053305 - ORSgTEMT01602413 239 0.0017 (5/2988) 0 * * Os_TE_771632 Chr1 2053268 2053269 + MDR2 6967 0.0007 (2/2996) 0 * Os_TE_771631 Os_TE_771631 Chr1 2053260 2053259 + MDR2 6967 0.0007 (2/2996) 0 * Os_TE_771632 Os_TE_771614 Chr1 2042010 2042009 - ORSgTEMT02400179 221 0.0248 (74/2978) 0 * * Os_TE_771611 Chr1 2041196 2041197 - TYPEM 227 0.0251 (75/2983) 0 * * Os_TE_771591 Chr1 2024060 2024061 - OLO24 345 0.5710 (1706/2988) 0 * * Os_TE_771588 Chr1 2023851 2023850 + ORSgTEMT00901202 248 0.0254 (76/2993) 0 * Os_TE_771587 Os_TE_771587 Chr1 2023849 2023850 - ORSgTEMT00901345 248 0.0244 (73/2992) 0 * Os_TE_771588 Os_TE_771584 Chr1 2023511 2023653 - ORSgTEMT00500313 140 0.3559 (1064/2990) 1 Intact * Os_TE_771583 Chr1 2023011 2023012 + SPMLIKE 10989 0.0060 (17/2836) 0 * Os_TE_771582 Os_TE_771582 Chr1 2023009 2023008 - ORSgTETN00200001 10994 0.0053 (15/2831) 0 * Os_TE_771583 Os_TE_771581 Chr1 2022360 2022361 - CLOUD 734 0.0020 (6/2949) 0 * * Os_TE_771577 Chr1 2020955 2021268 - ORSgTEMT00100507 344 0.5716 (1226/2145) 1 Intact * Os_TE_771571 Chr1 2014704 2014705 - COPI2_LTR 4733 0.0004 (1/2504) 0 * Os_TE_771570 Os_TE_771570 Chr1 2014700 2014699 + COPI2_LTR 4733 0.0004 (1/2502) 0 * Os_TE_771571 Os_TE_771556 Chr1 2005865 2006088 - ORSgTEMT01602413 239 0.2382 (588/2469) 1 Intact * Os_TE_771553 Chr1 2005558 2004187 + SETARIA 1402 0.2269 (548/2415) 1 Intact Os_TE_771550 Os_TE_771550 Chr1 2004187 2005558 - SETARIA 1402 0.2368 (568/2399) 1 Intact Os_TE_771553 Os_TE_771543 Chr1 2000144 1999899 - ORSgTEMT00900563 246 0.3709 (1047/2823) 1 Intact * Os_TE_771536 Chr1 1998805 1998563 + ORSgTEMT01400024 215 0.3521 (1053/2991) 1 Intact Os_TE_771531 Os_TE_771531 Chr1 1998564 1998768 - ORSgTEMT01400022 212 0.3479 (1037/2981) 1 Intact Os_TE_771536 Os_TE_771524 Chr1 1994949 1994950 + OLO24C 356 0.5922 (1760/2972) 0 * * Os_TE_771519 Chr1 1994475 1994476 + ORSgTEMT00501455 153 0.0689 (205/2974) 0 * Os_TE_771518 Os_TE_771518 Chr1 1994473 1994472 + ORSgTEMT00500560 148 0.0688 (202/2938) 0 * Os_TE_771519 Os_TE_771514 Chr1 1993029 1992755 - STOWAWAY11_OS 292 0.8926 (1014/1136) 1 Intact * Os_TE_771513 Chr1 1992567 1992568 - OSTE20 496 0.2685 (283/1054) 0 * * Os_TE_771512 Chr1 1992497 1992218 + ORSgTEMT04600010 284 0.3935 (1057/2686) 1 Intact Os_TE_771509 Os_TE_771509 Chr1 1992218 1992497 - ORSgTEMT04600010 284 0.3911 (1094/2797) 1 Intact Os_TE_771512 Os_TE_771482 Chr1 1987988 1987498 + OSTE20 496 0.1392 (334/2399) -1 Intact Os_TE_771481 Os_TE_771481 Chr1 1987498 1987987 + OSTE20 496 0.4047 (363/897) -1 Intact Os_TE_771482 Os_TE_771478 Chr1 1987204 1987203 - GAIJIN 147 0.5432 (1459/2686) 0 * * Os_TE_771476 Chr1 1985227 1985228 + SC-8_LTR 4951 0.0013 (4/2996) 0 * * Os_TE_771473 Chr1 1979196 1979008 + ORSgTEMT01601934 207 0.2282 (682/2989) 1 Intact * Os_TE_771470 Chr1 1978618 1978617 + STOWAWAY17_OS 259 0.0003 (1/2998) 0 * * Os_TE_771455 Chr1 1971999 1971998 + SZ-48LTR 3632 0.0017 (5/2979) 0 * * Os_TE_771452 Chr1 1971319 1971318 - ORSgTEMT01602467 227 0.0017 (5/2981) 0 * Os_TE_771451 Os_TE_771451 Chr1 1971316 1971317 - ORSgTEMT01602082 215 0.0017 (5/2987) 0 * Os_TE_771452 Os_TE_771450 Chr1 1971044 1971045 + MPING 430 0.0010 (3/2979) 0 * Os_TE_771449 Os_TE_771449 Chr1 1971042 1971041 - MPING 430 0.0010 (3/2977) 0 * Os_TE_771450 Os_TE_771448 Chr1 1969222 1969223 + STOWAWAY40_OS 264 0.0980 (292/2980) 0 * * Os_TE_771447 Chr1 1968012 1968011 - ORSgTEMT00900741 219 0.1069 (319/2984) 0 * * Os_TE_771444 Chr1 1966399 1966398 + ORSgTEMT01400031 216 0.1272 (310/2438) 0 * Os_TE_771443 Os_TE_771443 Chr1 1966394 1966395 + ORSgTEMT01400032 215 0.0496 (141/2844) 0 * Os_TE_771444 Os_TE_771442 Chr1 1966372 1966371 - ORSgTEMT00100799 337 0.0637 (183/2871) 0 * Os_TE_771441 Os_TE_771441 Chr1 1966370 1966371 + NDNA1TNA_OS 334 0.1094 (321/2933) 0 * Os_TE_771442 Os_TE_771440 Chr1 1966337 1966338 - OLO24 345 0.0908 (272/2995) 0 * * Os_TE_771430 Chr1 1963657 1963656 + TYPEU4 402 0.2410 (322/1336) 0 * * Os_TE_771429 Chr1 1962720 1962721 - ORSgTEMT00600304 361 0.0851 (255/2995) 0 * Os_TE_771428 Os_TE_771428 Chr1 1962718 1962717 - CASTAWAY 364 0.0849 (254/2991) 0 * Os_TE_771429 Os_TE_771425 Chr1 1960283 1960284 + ORSiTERTOOT00226 792 0.0004 (1/2439) 0 * * Os_TE_771422 Chr1 1957217 1957218 - ORSgTEMT01601432 239 0.0007 (2/2972) 0 * * Os_TE_771421 Chr1 1956733 1956734 - ORSgTETNOOT00534 256 0.5724 (1712/2991) 0 * Os_TE_771420 Os_TE_771420 Chr1 1956731 1956730 - INDITTO 263 0.5707 (1707/2991) 0 * Os_TE_771421 Os_TE_771407 Chr1 1950779 1950780 + SZ-48LTR 3632 0.1131 (337/2979) 0 * Os_TE_771406 Os_TE_771406 Chr1 1950775 1950774 - SZ-48LTR 3632 0.1137 (339/2981) 0 * Os_TE_771407 Os_TE_771398 Chr1 1949796 1949797 + F770 284 0.1170 (349/2984) 0 * Os_TE_771397 Os_TE_771397 Chr1 1949794 1949793 - F770 284 0.1116 (332/2975) 0 * Os_TE_771398 Os_TE_771384 Chr1 1945967 1945968 + ORSiTERTOOT00074 4935 0.6025 (1784/2961) 0 * * Os_TE_771380 Chr1 1945080 1945081 + COPI2_LTR 4733 0.0003 (1/2991) 0 * Os_TE_771379 Os_TE_771379 Chr1 1945076 1945075 - COPI2_LTR 4733 0.0003 (1/2988) 0 * Os_TE_771380 Os_TE_771371 Chr1 1942638 1942639 - DS-RICE2N 613 0.6534 (1949/2983) 0 * Os_TE_771370 Os_TE_771370 Chr1 1942631 1942630 + DS-RICE2N 613 0.6532 (1949/2984) 0 * Os_TE_771371 Os_TE_771351 Chr1 1937489 1937490 - ORSgTEMT00502257 142 0.0004 (1/2796) 0 * * Os_TE_771350 Chr1 1937480 1937481 + QIQI 323 0.0393 (114/2902) 0 * * Os_TE_771348 Chr1 1936824 1936825 - SZ-9LTR 965 0.1379 (412/2988) 0 * Os_TE_771347 Os_TE_771347 Chr1 1936820 1936819 + SZ-9LTR 965 0.1369 (409/2988) 0 * Os_TE_771348 Os_TE_771344 Chr1 1936105 1936106 + RETRO2A_LTR 12895 0.5934 (1763/2971) 0 * * Os_TE_771339 Chr1 1934973 1934974 - F770 284 0.1411 (421/2984) 0 * Os_TE_771338 Os_TE_771338 Chr1 1934971 1934970 + F770 284 0.1431 (418/2922) 0 * Os_TE_771339 Os_TE_771337 Chr1 1934900 1934901 + F770 284 0.0487 (140/2873) 0 * * Os_TE_771333 Chr1 1929918 1929919 - TYPEU1 380 0.6024 (1792/2975) 0 * Os_TE_771332 Os_TE_771332 Chr1 1929910 1929909 + TYPEU4 402 0.5931 (1774/2991) 0 * Os_TE_771333 Os_TE_771327 Chr1 1927778 1926356 + MERMITEB 1610 0.8377 (2498/2982) 1 Intact Os_TE_771325 Os_TE_771325 Chr1 1926354 1927776 + MERMITEB 1610 0.8395 (2495/2972) 1 Intact Os_TE_771327 Os_TE_771307 Chr1 1912783 1912784 - COPI2_LTR 4733 0.0003 (1/2983) 0 * Os_TE_771306 Os_TE_771306 Chr1 1912779 1912778 + COPI2_LTR 4733 0.0003 (1/2978) 0 * Os_TE_771307 Os_TE_771303 Chr1 1911686 1911687 - Cassandra_OS-LTR 764 0.0020 (6/2977) 0 * Os_TE_771302 Os_TE_771302 Chr1 1911682 1911681 + Cassandra_OS-LTR 764 0.0034 (10/2979) 0 * Os_TE_771303 Os_TE_771301 Chr1 1910699 1910700 + SZ-55_LTR 10318 0.0017 (5/2994) 0 * Os_TE_771300 Os_TE_771300 Chr1 1910695 1910694 - SZ-55_LTR 10318 0.0020 (6/2994) 0 * Os_TE_771301 Os_TE_771298 Chr1 1910221 1910222 + STOWAWAY51_OS 246 0.0053 (16/2993) 0 * * Os_TE_771296 Chr1 1909471 1909470 - ORSgTEMT00502359 149 0.0053 (16/2997) 0 * * Os_TE_771294 Chr1 1908122 1908123 - ORSgTEMT01601696 238 0.0454 (136/2995) 0 * * Os_TE_771290 Chr1 1905300 1905301 - OLO24 345 0.0466 (139/2982) 0 * Os_TE_771289 Os_TE_771289 Chr1 1905298 1905297 + OLO24 345 0.0476 (142/2982) 0 * Os_TE_771290 Os_TE_771285 Chr1 1901826 1901827 + COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_771284 Os_TE_771284 Chr1 1901822 1901821 - COPI2_LTR 4733 0.0003 (1/2998) 0 * Os_TE_771285 Os_TE_771283 Chr1 1901564 1901565 + COPI2_LTR 4733 0.0003 (1/2994) 0 * * Os_TE_771278 Chr1 1897079 1897078 - ORSgTETNOOT01930 140 0.0392 (117/2984) 0 * * Os_TE_771263 Chr1 1894183 1894184 + ORSgTETNOOT00906 136 0.0234 (69/2950) 0 * * Os_TE_771258 Chr1 1892610 1892611 - COPIA2-LTR_OS 6433 0.0003 (1/2983) 0 * Os_TE_771257 Os_TE_771257 Chr1 1892606 1892605 + COPIA2-LTR_OS 6433 0.0003 (1/2983) 0 * Os_TE_771258 Os_TE_771252 Chr1 1889209 1889210 - ORSgTEMT01600201 236 0.0003 (1/2993) 0 * * Os_TE_771211 Chr1 1879326 1879325 - RETROSAT2LTR 12796 0.4975 (1490/2995) 0 * * Os_TE_771200 Chr1 1873859 1873858 + ORSgTETNOOT00908 242 0.0007 (2/2999) 0 * * Os_TE_771198 Chr1 1873292 1873293 - MPING 430 0.0003 (1/2996) 0 * Os_TE_771197 Os_TE_771197 Chr1 1873290 1873289 + MPING 430 0.0003 (1/2993) 0 * Os_TE_771198 Os_TE_771194 Chr1 1871888 1871887 - ORSgTEMT00100811 332 0.0003 (1/2964) 0 * * Os_TE_771184 Chr1 1870729 1870728 + TWIF 586 0.0003 (1/2997) 0 * * Os_TE_771179 Chr1 1867522 1867523 + INDITTO 263 0.0004 (1/2335) 0 * Os_TE_771178 Os_TE_771178 Chr1 1867520 1867519 - INDITTO 263 0.0003 (1/2996) 0 * Os_TE_771179 Os_TE_771177 Chr1 1867506 1867507 - INDITTO 263 0.2421 (723/2986) 0 * Os_TE_771176 Os_TE_771176 Chr1 1867504 1867503 + INDITTO 263 0.2431 (727/2991) 0 * Os_TE_771177 Os_TE_771172 Chr1 1866150 1866149 - ORSgTEMT01601768 238 0.0204 (61/2995) 0 * Os_TE_771171 Os_TE_771171 Chr1 1866147 1866148 + ORSgTEMT01602181 239 0.0217 (65/2997) 0 * Os_TE_771172 Os_TE_771167 Chr1 1863053 1863054 + AMYLTP 383 0.0214 (64/2997) 0 * Os_TE_771166 Os_TE_771166 Chr1 1863045 1863044 - AMYLTP 383 0.0210 (63/2996) 0 * Os_TE_771167 Os_TE_771143 Chr1 1856301 1856302 + HARB-1_OS 5166 0.0030 (9/2983) 0 * Os_TE_771142 Os_TE_771142 Chr1 1856299 1856298 - HARB-1_OS 5166 0.0030 (9/2976) 0 * Os_TE_771143 Os_TE_771137 Chr1 1853522 1853521 + SC-8_LTR 4951 0.0003 (1/2953) 0 * * Os_TE_771120 Chr1 1843867 1843868 + OSTE33 1012 0.0205 (61/2980) 0 * Os_TE_771119 Os_TE_771119 Chr1 1843858 1843857 + OSTE33 1012 0.0195 (58/2979) 0 * Os_TE_771120 Os_TE_771113 Chr1 1842720 1842719 - ORSgTEMT01601432 239 0.0007 (2/2970) 0 * Os_TE_771112 Os_TE_771112 Chr1 1842717 1842718 - ORSgTEMT01601432 239 0.0007 (2/2959) 0 * Os_TE_771113 Os_TE_771087 Chr1 1832559 1832560 - NDNA1TNA_OS 334 0.2477 (735/2967) 0 * * Os_TE_771075 Chr1 1831138 1831137 - ORSgTERT00201216 11284 0.0484 (143/2953) 0 * * Os_TE_771073 Chr1 1830680 1830681 - RIRE2_LTR 11306 0.0164 (49/2986) 0 * * Os_TE_771041 Chr1 1810706 1810707 - SC-3_LTR 5748 0.0003 (1/2984) 0 * Os_TE_771040 Os_TE_771040 Chr1 1810702 1810701 + ORSiTERTOOT00296 5553 0.0003 (1/2984) 0 * Os_TE_771041 Os_TE_771037 Chr1 1808460 1808461 + ORSiTERTOOT00296 5553 0.0003 (1/2976) 0 * Os_TE_771036 Os_TE_771036 Chr1 1808456 1808455 - SC-3_LTR 5748 0.0003 (1/2980) 0 * Os_TE_771037 Os_TE_771035 Chr1 1807756 1807757 - SC-8_LTR 4951 0.0003 (1/2990) 0 * Os_TE_771034 Os_TE_771034 Chr1 1807752 1807751 + SC-8_LTR 4951 0.0003 (1/2990) 0 * Os_TE_771035 Os_TE_771023 Chr1 1796177 1796178 - TNR8-21 428 0.0007 (2/2773) 0 * * Os_TE_771010 Chr1 1794456 1794093 - CASTAWAY 364 0.2221 (664/2990) 1 Intact Os_TE_771007 Os_TE_771007 Chr1 1794093 1794456 + ORSgTEMT00600120 364 0.2253 (674/2991) 1 Intact Os_TE_771010 Os_TE_770950 Chr1 1773107 1773106 + ORSgTEMT00901422 244 0.0017 (5/2995) 0 * * Os_TE_770947 Chr1 1771334 1771335 - INDITTO 263 0.0003 (1/2997) 0 * * Os_TE_770941 Chr1 1768640 1768641 + SC-8_LTR 4951 0.0037 (11/2997) 0 * Os_TE_770940 Os_TE_770940 Chr1 1768636 1768635 - SC-8_LTR 4951 0.0037 (11/2995) 0 * Os_TE_770941 Os_TE_770925 Chr1 1762769 1762558 - ORSgTEMT02400179 221 0.2260 (675/2987) 1 Intact * Os_TE_770915 Chr1 1754098 1754097 + MERMITEB 1610 0.0018 (5/2844) -1 * * Os_TE_770908 Chr1 1748895 1748896 + MPING 430 0.0451 (135/2996) 0 * Os_TE_770907 Os_TE_770907 Chr1 1748893 1748892 - MPING 430 0.0455 (136/2990) 0 * Os_TE_770908 Os_TE_770906 Chr1 1748837 1748838 + ORSgTETNOOT00908 242 0.0007 (2/2997) 0 * * Os_TE_770900 Chr1 1744671 1744672 + F770 284 0.0033 (10/2986) 0 * * Os_TE_770897 Chr1 1743508 1743509 + MPING 430 0.0013 (4/2995) 0 * Os_TE_770896 Os_TE_770896 Chr1 1743506 1743505 - MPING 430 0.0013 (4/2993) 0 * Os_TE_770897 Os_TE_770895 Chr1 1743445 1743446 + MuDR3_OS 8604 0.0010 (3/2994) 0 * Os_TE_770894 Os_TE_770894 Chr1 1743437 1743436 - MuDR3_OS 8604 0.0013 (4/2995) 0 * Os_TE_770895 Os_TE_770888 Chr1 1740393 1740394 - MPING 430 0.0003 (1/2990) 0 * Os_TE_770887 Os_TE_770887 Chr1 1740391 1740390 + MPING 430 0.0003 (1/2987) 0 * Os_TE_770888 Os_TE_770882 Chr1 1737213 1737214 - OSTE20 496 0.0010 (3/2969) 0 * * Os_TE_770833 Chr1 1722795 1722796 - RIREX_LTR 8828 0.0551 (162/2942) 0 * Os_TE_770832 Os_TE_770832 Chr1 1722791 1722790 + RIREX_LTR 8828 0.0543 (161/2965) 0 * Os_TE_770833 Os_TE_770812 Chr1 1716606 1716605 - COPI2_LTR 4733 0.0003 (1/2995) 0 * * Os_TE_770803 Chr1 1713566 1713567 + MPING 430 0.0007 (2/2999) 0 * Os_TE_770802 Os_TE_770802 Chr1 1713564 1713563 - MPING 430 0.0007 (2/2994) 0 * Os_TE_770803 Os_TE_770763 Chr1 1698128 1698129 + OSTE33 1012 0.6323 (1759/2782) 0 * Os_TE_770762 Os_TE_770762 Chr1 1698121 1698120 + OSTE33 1012 0.6617 (1962/2965) 0 * Os_TE_770763 Os_TE_770738 Chr1 1691678 1691679 - ORSgTETNOOT00053 263 0.0007 (2/2984) 0 * Os_TE_770737 Os_TE_770737 Chr1 1691676 1691675 + ORSgTETNOOT00221 261 0.0003 (1/2985) 0 * Os_TE_770738 Os_TE_770725 Chr1 1688819 1688820 - INDITTO 263 0.0060 (18/2978) 0 * Os_TE_770724 Os_TE_770724 Chr1 1688817 1688816 + INDITTO 263 0.0054 (16/2982) 0 * Os_TE_770725 Os_TE_770723 Chr1 1688797 1688798 - MPING 430 0.0003 (1/2982) 0 * Os_TE_770722 Os_TE_770722 Chr1 1688795 1688794 + MPING 430 0.0003 (1/2980) 0 * Os_TE_770723 Os_TE_770721 Chr1 1688616 1688617 - INDITTO 263 0.0010 (3/2988) 0 * Os_TE_770720 Os_TE_770720 Chr1 1688614 1688613 + INDITTO 263 0.0010 (3/2988) 0 * Os_TE_770721 Os_TE_770715 Chr1 1686670 1686671 - COPI2_LTR 4733 0.0025 (7/2815) 0 * Os_TE_770714 Os_TE_770714 Chr1 1686666 1686665 + COPI2_LTR 4733 0.0025 (7/2818) 0 * Os_TE_770715 Os_TE_770704 Chr1 1681217 1681216 - STOWAWAY44_OS 240 0.0077 (23/2990) 0 * Os_TE_770703 Os_TE_770703 Chr1 1681214 1681215 + STOWAWAY44_OS 240 0.0077 (23/2991) 0 * Os_TE_770704 Os_TE_770666 Chr1 1670329 1670330 + COPI2_LTR 4733 0.0010 (3/2980) 0 * Os_TE_770665 Os_TE_770665 Chr1 1670325 1670324 - COPI2_LTR 4733 0.0017 (5/2982) 0 * Os_TE_770666 Os_TE_770655 Chr1 1666573 1666572 + CACTA-M 1129 0.0003 (1/2935) 0 * * Os_TE_770646 Chr1 1664240 1665444 + SETARIA2 1142 0.4564 (340/745) -1 Intact * Os_TE_770637 Chr1 1661671 1661672 + ORSgTEMT00901202 248 0.0007 (2/2675) 0 * * Os_TE_770636 Chr1 1661665 1661666 - ORSgTEMT00900099 250 0.0008 (2/2661) 0 * * Os_TE_770623 Chr1 1656578 1656579 - COPI2_LTR 4733 0.0003 (1/2966) 0 * * Os_TE_770617 Chr1 1654547 1654546 - INDITTO 263 0.1529 (447/2924) 0 * * Os_TE_770616 Chr1 1654543 1654544 + STOWAWAY45_OS 266 0.0526 (153/2906) 0 * * Os_TE_770615 Chr1 1654529 1654530 + NDNA1TNA_OS 334 0.0172 (51/2960) 0 * Os_TE_770614 Os_TE_770614 Chr1 1654527 1654526 - NDNA1TNA_OS 334 0.0188 (51/2713) 0 * Os_TE_770615 Os_TE_770613 Chr1 1654457 1654458 - SZ-4_LTR 5991 0.0003 (1/2945) 0 * Os_TE_770612 Os_TE_770612 Chr1 1654453 1654452 + SZ-4_LTR 5991 0.0003 (1/2896) 0 * Os_TE_770613 Os_TE_770604 Chr1 1653531 1653532 - INDITTO 263 0.0113 (33/2925) 0 * Os_TE_770603 Os_TE_770603 Chr1 1653529 1653528 + INDITTO 263 0.0109 (32/2932) 0 * Os_TE_770604 Os_TE_770584 Chr1 1646774 1647803 + RETRO2_LTR 12874 0.4957 (1452/2929) 1 Solo_LTR * Os_TE_770582 Chr1 1645086 1645087 + COPI2_LTR 4733 0.0020 (6/2996) 0 * Os_TE_770581 Os_TE_770581 Chr1 1645082 1645081 - COPI2_LTR 4733 0.0020 (6/2985) 0 * Os_TE_770582 Os_TE_770564 Chr1 1632417 1632418 - SZ-55_LTR 10318 0.0612 (183/2988) 0 * Os_TE_770563 Os_TE_770563 Chr1 1632413 1632412 + SZ-55_LTR 10318 0.0641 (192/2993) 0 * Os_TE_770564 Os_TE_770549 Chr1 1628412 1628413 + SZ-48LTR 3632 0.0037 (11/2962) 0 * Os_TE_770548 Os_TE_770548 Chr1 1628408 1628407 - SZ-48LTR 3632 0.0031 (9/2930) 0 * Os_TE_770549 Os_TE_770542 Chr1 1627344 1627343 - STOWAWAY51_OS 246 0.0003 (1/2990) 0 * Os_TE_770541 Os_TE_770541 Chr1 1627338 1627339 + STOWAWAY51_OS 246 0.0003 (1/2983) 0 * Os_TE_770542 Os_TE_770530 Chr1 1624098 1624099 + NDNA1TNA_OS 334 0.0030 (9/2992) 0 * * Os_TE_770513 Chr1 1608765 1617684 + SZ-55_LTR 10318 0.3327 (997/2997) 1 Intact * Os_TE_770485 Chr1 1593399 1593400 + TRUNCATOR 2918 0.0007 (2/2716) 0 * * Os_TE_770466 Chr1 1578366 1578367 + STOWAWAY44_OS 240 0.0003 (1/2982) 0 * * Os_TE_770448 Chr1 1565446 1565447 - SC-7_LTR 4431 0.0004 (1/2533) 0 * * Os_TE_770440 Chr1 1562021 1562022 + INDITTO 263 0.3051 (886/2904) 0 * Os_TE_770439 Os_TE_770439 Chr1 1562019 1562018 - INDITTO 263 0.3246 (964/2970) 0 * Os_TE_770440 Os_TE_770438 Chr1 1561997 1561998 - INDITTO 263 0.0563 (166/2950) 0 * * Os_TE_770434 Chr1 1560120 1560119 + MUDRN5_OS 374 0.0003 (1/2994) 0 * * Os_TE_770430 Chr1 1557928 1557929 + COPIA2-LTR_OS 6433 0.0007 (2/2975) 0 * Os_TE_770429 Os_TE_770429 Chr1 1557924 1557923 - COPIA2-LTR_OS 6433 0.0007 (2/2766) 0 * Os_TE_770430 Os_TE_770424 Chr1 1555840 1555839 - SZ-35LTR 3853 0.0007 (2/2894) 0 * * Os_TE_770423 Chr1 1555327 1555328 - COPI2_LTR 4733 0.0003 (1/2990) 0 * Os_TE_770422 Os_TE_770422 Chr1 1555323 1555322 + COPI2_LTR 4733 0.0003 (1/2984) 0 * Os_TE_770423 Os_TE_770386 Chr1 1544710 1544711 - F524 291 0.0003 (1/2925) 0 * * Os_TE_770384 Chr1 1544671 1544670 + ORSgTETNOOT01846 238 0.0007 (2/2938) 0 * * Os_TE_770376 Chr1 1539949 1539950 + MERMITED 1572 0.0003 (1/2992) 0 * Os_TE_770375 Os_TE_770375 Chr1 1539943 1539942 + MERMITEJ 1498 0.0003 (1/2992) 0 * Os_TE_770376 Os_TE_770374 Chr1 1537256 1537257 - TRSA_OS 353 0.6517 (1948/2989) 0 * * Os_TE_770360 Chr1 1531653 1531652 - ORSgTEMT01601111 238 0.0003 (1/2993) 0 * Os_TE_770359 Os_TE_770359 Chr1 1531647 1531648 - ORSgTEMT01600639 228 0.0007 (2/2995) 0 * Os_TE_770360 Os_TE_770356 Chr1 1531026 1524180 + RIREX_LTR 8828 0.3656 (1084/2965) 1 Intact * Os_TE_770333 Chr1 1518199 1518198 - ORSgTEMT00900892 250 0.0540 (161/2984) 0 * Os_TE_770332 Os_TE_770332 Chr1 1518195 1518196 - ORSgTEMT00901723 248 0.0513 (153/2981) 0 * Os_TE_770333 Os_TE_770322 Chr1 1515856 1515857 + MPING 430 0.0007 (2/2994) 0 * Os_TE_770321 Os_TE_770321 Chr1 1515854 1515853 - MPING 430 0.0003 (1/2995) 0 * Os_TE_770322 Os_TE_770317 Chr1 1515107 1515108 - COPI2_LTR 4733 0.0004 (1/2801) 0 * * Os_TE_770308 Chr1 1512253 1512252 + CRM-LTR_OS 7749 0.0023 (7/2999) 0 * * Os_TE_770305 Chr1 1510283 1510282 - SC-3_LTR 5748 0.0003 (1/2992) 0 * * Os_TE_770296 Chr1 1505171 1505172 + ORSgTEMT01701663 106 0.4270 (1278/2993) 0 * * Os_TE_770280 Chr1 1500903 1500904 - AMYLTP 383 0.0520 (155/2983) 0 * Os_TE_770279 Os_TE_770279 Chr1 1500894 1500893 + AMYLTP 383 0.0519 (155/2986) 0 * Os_TE_770280 Os_TE_770270 Chr1 1496901 1496900 + RETROSAT4_LTR 13504 0.0007 (2/2841) 0 * * Os_TE_770269 Chr1 1496495 1496496 - RETRO2_LTR 12874 0.0034 (9/2663) 0 * Os_TE_770268 Os_TE_770268 Chr1 1496491 1496490 + RETRO2_LTR 12874 0.0050 (10/2019) 0 * Os_TE_770269 Os_TE_770267 Chr1 1496440 1496441 + SZ-48LTR 3632 0.0017 (5/2976) 0 * Os_TE_770266 Os_TE_770266 Chr1 1496436 1496435 - SZ-48LTR 3632 0.0017 (5/2951) 0 * Os_TE_770267 Os_TE_770264 Chr1 1496164 1495550 + DS-RICE2N 613 0.6757 (2000/2960) 1 Intact * Os_TE_770260 Chr1 1494585 1494586 - INDITTO 263 0.0003 (1/2981) 0 * * Os_TE_770258 Chr1 1494467 1494468 - MPING 430 0.0007 (2/2978) 0 * Os_TE_770257 Os_TE_770257 Chr1 1494465 1494464 + MPING 430 0.0007 (2/2970) 0 * Os_TE_770258 Os_TE_770249 Chr1 1490420 1490421 - ORSgTERT00201216 11284 0.0506 (151/2987) 0 * Os_TE_770248 Os_TE_770248 Chr1 1490416 1490415 - RIRE2_LTR 11306 0.0173 (50/2895) 0 * Os_TE_770249 Os_TE_770244 Chr1 1485708 1485709 + SPMLIKE 10989 0.0515 (154/2990) 0 * Os_TE_770243 Os_TE_770243 Chr1 1485706 1485705 - ORSgTETN00200001 10994 0.0512 (153/2988) 0 * Os_TE_770244 Os_TE_770206 Chr1 1450589 1483323 + CACTA-B 1103 0.6110 (1827/2990) 1 Intact * Os_TE_770198 Chr1 1444151 1444150 - COPI2_LTR 4733 0.0003 (1/2993) 0 * * Os_TE_770188 Chr1 1443039 1439473 + TWIFBIG 3567 0.3124 (745/2385) -1 Intact Os_TE_770187 Os_TE_770187 Chr1 1439473 1443039 - TWIFBIG 3567 0.4536 (1333/2939) 1 Intact Os_TE_770188 Os_TE_770138 Chr1 1420093 1420094 + ORSgTEMT05000092 279 0.0014 (4/2803) 0 * Os_TE_770137 Os_TE_770137 Chr1 1420091 1420090 - SUSU 279 0.0018 (5/2824) 0 * Os_TE_770138 Os_TE_770117 Chr1 1404695 1404694 + AMYLTP 383 0.0003 (1/2991) 0 * * Os_TE_770114 Chr1 1404229 1404230 - SC-3_LTR 5748 0.0011 (3/2766) 0 * Os_TE_770113 Os_TE_770113 Chr1 1404225 1404224 + ORSiTERTOOT00296 5553 0.0011 (3/2766) 0 * Os_TE_770114 Os_TE_770110 Chr1 1402487 1402486 + ORSgTETNOOT00908 242 0.0003 (1/2995) 0 * * Os_TE_770107 Chr1 1401711 1401712 + NDNA1TNA_OS 334 0.0003 (1/2996) 0 * Os_TE_770106 Os_TE_770106 Chr1 1401709 1401708 + ORSgTEMT00100272 356 0.0003 (1/2995) 0 * Os_TE_770107 Os_TE_770105 Chr1 1400540 1400539 - COPI2_LTR 4733 0.0003 (1/2859) 0 * * Os_TE_770098 Chr1 1398371 1398370 + ORSgTETNOOT00674 259 0.0521 (156/2992) 0 * * Os_TE_770068 Chr1 1378498 1378499 + SZ-55_LTR 10318 0.0003 (1/2974) 0 * * Os_TE_770062 Chr1 1378225 1378226 + SZ-35LTR 3853 0.0007 (2/2826) 0 * * Os_TE_770060 Chr1 1378184 1378185 + STOWAWAY11_OS 292 0.0004 (1/2853) 0 * * Os_TE_770045 Chr1 1377309 1377308 - ORSgTEMT01900052 340 0.0014 (4/2849) 0 * * Os_TE_770044 Chr1 1376116 1376115 - COPI2_LTR 4733 0.0005 (1/1954) 0 * * Os_TE_770042 Chr1 1376101 1376100 + RIREX_LTR 8828 0.0010 (2/1954) 0 * * Os_TE_770038 Chr1 1374018 1374019 + COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_770037 Os_TE_770037 Chr1 1374014 1374013 - COPIA2-LTR_OS 6433 0.0003 (1/2995) 0 * Os_TE_770038 Os_TE_770036 Chr1 1373552 1369752 + RETROSAT4_LTR 13504 0.5982 (1785/2984) 1 Solo_LTR Os_TE_770030 Os_TE_770030 Chr1 1369752 1373552 - SZ-35LTR 3853 0.6049 (1813/2997) 1 Intact Os_TE_770036 Os_TE_770022 Chr1 1365324 1365325 - MDR2 6967 0.0136 (37/2721) 0 * Os_TE_770021 Os_TE_770021 Chr1 1365318 1365317 + RPO_OS 1983 0.0150 (41/2725) 0 * Os_TE_770022 Os_TE_770020 Chr1 1365272 1365271 - ORSgTEMT01600639 228 0.0017 (5/2943) 0 * Os_TE_770019 Os_TE_770019 Chr1 1365269 1365270 - ORSgTEMT01601208 238 0.0022 (6/2692) 0 * Os_TE_770020 Os_TE_770007 Chr1 1362559 1362558 + OsSN3 183 0.0029 (6/2100) 0 * * Os_TE_770006 Chr1 1362246 1362247 - OSTE24 683 0.0017 (4/2362) 0 * Os_TE_770005 Os_TE_770005 Chr1 1362236 1362235 - OSTE24 683 0.0013 (3/2362) 0 * Os_TE_770006 Os_TE_770003 Chr1 1361589 1361350 - ORSgTEMT00900760 239 0.8786 (2070/2356) 1 Intact Os_TE_770002 Os_TE_770002 Chr1 1361339 1361588 - ORSgTEMT00901723 248 0.8746 (1973/2256) 1 Intact Os_TE_770003 Os_TE_769999 Chr1 1359360 1359361 + SZ-28LTR 262 0.0007 (2/2987) 0 * * Os_TE_769993 Chr1 1356135 1356134 - ORSgTEMT01602413 239 0.0137 (41/2987) 0 * * Os_TE_769991 Chr1 1355289 1355290 + COPIA2-LTR_OS 6433 0.0027 (7/2597) 0 * Os_TE_769990 Os_TE_769990 Chr1 1355285 1355284 - COPIA2-LTR_OS 6433 0.0027 (7/2628) 0 * Os_TE_769991 Os_TE_769985 Chr1 1354823 1354822 + ORSgTEMT00901862 245 0.2406 (636/2643) 0 * * Os_TE_769983 Chr1 1354800 1354801 + ORSgTEMT00700017 386 0.0014 (4/2955) 0 * * Os_TE_769970 Chr1 1352013 1352014 - AMYLTP 383 0.0013 (3/2291) 0 * * Os_TE_769966 Chr1 1351321 1350025 - JINHUA 479 0.7331 (1577/2151) 1 Intact * Os_TE_769946 Chr1 1346877 1346878 - CENTRE 280 0.0003 (1/2949) 0 * * Os_TE_769935 Chr1 1344571 1344316 - ORSgTEMT00101183 253 0.7794 (2155/2765) 1 Intact Os_TE_769933 Os_TE_769933 Chr1 1344315 1344579 - ORSgTEMT00100758 259 0.7912 (2258/2854) 1 Intact Os_TE_769935 Os_TE_769902 Chr1 1337550 1337549 - ORSgTEMT02400246 177 0.2245 (598/2664) 0 * Os_TE_769901 Os_TE_769901 Chr1 1337549 1337550 - TYPEM 227 0.2293 (613/2673) 0 * Os_TE_769902 Os_TE_769883 Chr1 1328251 1328252 - RETROFIT_LTR 4866 0.2062 (609/2954) 0 * Os_TE_769882 Os_TE_769882 Chr1 1328248 1328247 + ORSiTERTOOT00033 4884 0.2057 (606/2946) 0 * Os_TE_769883 Os_TE_769876 Chr1 1327822 1327823 + ORSgTETNOOT00906 136 0.2483 (691/2783) 0 * * Os_TE_769875 Chr1 1327720 1327719 + ORSgTEMT03000039 377 0.0011 (3/2666) 0 * * Os_TE_769874 Chr1 1327570 1327345 - STOWAWAY9_OS 235 0.7620 (2104/2761) 1 Intact Os_TE_769871 Os_TE_769871 Chr1 1327343 1327543 - ORSgTEMT01400006 213 0.7764 (2253/2902) 1 Intact Os_TE_769874 Os_TE_769870 Chr1 1327203 1327204 - RETROFIT3_LTR 5391 0.0032 (9/2838) 0 * * Os_TE_769864 Chr1 1326695 1326696 + OSTE33 1012 0.0007 (2/2975) 0 * * Os_TE_769862 Chr1 1326514 1326515 + ORSgTEMT00501455 153 0.2293 (685/2988) 0 * * Os_TE_769861 Chr1 1326462 1326463 - RIREX_LTR 8828 0.0003 (1/2986) 0 * Os_TE_769860 Os_TE_769860 Chr1 1326458 1326457 + RIREX_LTR 8828 0.0003 (1/2975) 0 * Os_TE_769861 Os_TE_769859 Chr1 1326342 1326341 - STOWAWAY51_OS 246 0.0007 (2/2982) 0 * * Os_TE_769858 Chr1 1326335 1326336 + ORSgTEMT00500201 140 0.2230 (665/2982) 0 * * Os_TE_769856 Chr1 1325747 1325748 - F524 291 0.2317 (658/2840) 0 * Os_TE_769855 Os_TE_769855 Chr1 1325732 1325731 + F524 291 0.2457 (698/2841) 0 * Os_TE_769856 Os_TE_769849 Chr1 1323342 1323341 + NDNA1TNA_OS 334 0.0013 (4/2991) 0 * * Os_TE_769848 Chr1 1323298 1323299 - STOWAWAY51_OS 246 0.1677 (499/2975) 0 * * Os_TE_769835 Chr1 1319862 1319861 + QINNIU 528 0.0007 (2/2719) 0 * * Os_TE_769804 Chr1 1308111 1308112 - RETROSAT2LTR 12796 0.0016 (4/2491) 0 * * Os_TE_769791 Chr1 1305718 1305717 + ORSgTETNOOT01219 231 0.0010 (3/2890) 0 * * Os_TE_769781 Chr1 1303449 1303315 + ORSgTEMT00502437 145 0.7850 (2341/2982) 1 Intact * Os_TE_769773 Chr1 1302950 1302600 + ORSgTEMT00101583 342 0.8775 (2320/2644) 1 Intact * Os_TE_769714 Chr1 1290539 1290540 + RIREX_LTR 8828 0.0004 (1/2319) 0 * * Os_TE_769706 Chr1 1288975 1288976 + SPMLIKE 10989 0.0004 (1/2363) 0 * * Os_TE_769612 Chr1 1257191 1255700 - DS-RICE2N 613 0.8570 (2091/2440) 1 Intact * Os_TE_769604 Chr1 1253214 1253439 - STOWAWAY51_OS 246 0.7677 (2260/2944) 1 Intact * Os_TE_769603 Chr1 1252851 1252850 + ORSgTEMT00500476 150 0.2291 (646/2820) 0 * * Os_TE_769564 Chr1 1243771 1243772 - CRATA 4786 0.0174 (52/2987) 0 * Os_TE_769563 Os_TE_769563 Chr1 1243764 1243763 + CRATA 4786 0.0167 (50/2988) 0 * Os_TE_769564 Os_TE_769551 Chr1 1241184 1241185 + ORSiTERTOOT00033 4884 0.0003 (1/2996) 0 * Os_TE_769550 Os_TE_769550 Chr1 1241181 1241180 - RETROFIT_LTR 4866 0.0003 (1/2997) 0 * Os_TE_769551 Os_TE_769534 Chr1 1225084 1225085 + ORSiTERTOOT00381 4988 0.0033 (10/2989) 0 * Os_TE_769533 Os_TE_769533 Chr1 1225080 1225079 - SC-8_LTR 4951 0.0033 (10/2988) 0 * Os_TE_769534 Os_TE_769528 Chr1 1222566 1222567 - ORSgTEMT01702061 155 0.0003 (1/2988) 0 * * Os_TE_769499 Chr1 1214167 1214166 + ORSgTEMT00901844 250 0.0007 (2/2981) 0 * * Os_TE_769489 Chr1 1212466 1212467 + ORSgTEMT00500201 140 0.0007 (2/2985) 0 * Os_TE_769488 Os_TE_769488 Chr1 1212464 1212463 + ORSgTEMT00500209 122 0.0007 (2/2981) 0 * Os_TE_769489 Os_TE_769485 Chr1 1211394 1211395 - COPIA2-LTR_OS 6433 0.0003 (1/2987) 0 * * Os_TE_769440 Chr1 1196900 1196901 + SINE1OS 127 0.0027 (8/2973) 0 * * Os_TE_769429 Chr1 1193548 1193549 - MPING 430 0.0003 (1/2989) 0 * Os_TE_769428 Os_TE_769428 Chr1 1193546 1193545 + MPING 430 0.0003 (1/2988) 0 * Os_TE_769429 Os_TE_769427 Chr1 1193338 1193339 + ORSgTETNOOT01930 140 0.0003 (1/2995) 0 * Os_TE_769426 Os_TE_769426 Chr1 1193336 1193335 + ORSgTEMT00502171 134 0.0003 (1/2996) 0 * Os_TE_769427 Os_TE_769416 Chr1 1190554 1190555 - MPING 430 0.0007 (2/2989) 0 * Os_TE_769415 Os_TE_769415 Chr1 1190552 1190551 + MPING 430 0.0007 (2/2992) 0 * Os_TE_769416 Os_TE_769411 Chr1 1180669 1180670 + COPIA2-LTR_OS 6433 0.0177 (53/2988) 0 * Os_TE_769410 Os_TE_769410 Chr1 1180665 1180664 - COPIA2-LTR_OS 6433 0.0184 (55/2992) 0 * Os_TE_769411 Os_TE_769370 Chr1 1155748 1155749 - JOUZHENA 607 0.0014 (4/2948) 0 * Os_TE_769369 Os_TE_769369 Chr1 1155741 1155740 + JOUZHENA 607 0.0014 (4/2948) 0 * Os_TE_769370 Os_TE_769334 Chr1 1140008 1140009 - ORSiTERT00200154 9386 0.1865 (543/2912) 0 * * Os_TE_769332 Chr1 1139938 1139939 + ORSgTEMT00400010 151 0.0003 (1/2948) 0 * * Os_TE_769284 Chr1 1132977 1132978 + MPING 430 0.0003 (1/2979) 0 * Os_TE_769283 Os_TE_769283 Chr1 1132975 1132974 - MPING 430 0.0003 (1/2967) 0 * Os_TE_769284 Os_TE_769282 Chr1 1132931 1132932 + OSTE33 1012 0.0914 (272/2976) 0 * Os_TE_769281 Os_TE_769281 Chr1 1132922 1132921 + OSTE33 1012 0.0898 (267/2974) 0 * Os_TE_769282 Os_TE_769280 Chr1 1132845 1132846 - ORSgTETNOOT02339 261 0.0007 (2/2971) 0 * Os_TE_769279 Os_TE_769279 Chr1 1132843 1132842 + INDITTO 263 0.0007 (2/2982) 0 * Os_TE_769280 Os_TE_769277 Chr1 1132744 1132745 + MPING 430 0.0003 (1/2961) 0 * * Os_TE_769263 Chr1 1130041 1130042 + ORSgTEMT00600272 361 0.0030 (9/2972) 0 * Os_TE_769262 Os_TE_769262 Chr1 1130036 1130035 - ORSgTEMT00600478 361 0.0024 (7/2974) 0 * Os_TE_769263 Os_TE_769254 Chr1 1128764 1128765 + TRUNCATOR 2918 0.0010 (3/2963) 0 * * Os_TE_769239 Chr1 1123820 1123819 - ORSgTETN00200001 10994 0.0003 (1/2991) 0 * * Os_TE_769236 Chr1 1122496 1122497 - ORSgTEMT02400179 221 0.0024 (7/2969) 0 * * Os_TE_769232 Chr1 1121241 1121242 - ORSgTETN00200001 10994 0.0010 (3/2977) 0 * Os_TE_769231 Os_TE_769231 Chr1 1121239 1121238 + SPMLIKE 10989 0.0010 (3/2981) 0 * Os_TE_769232 Os_TE_769221 Chr1 1118218 1118217 - STOWAWAY51_OS 246 0.0021 (6/2835) 0 * Os_TE_769220 Os_TE_769220 Chr1 1118212 1118213 + STOWAWAY51_OS 246 0.0018 (5/2809) 0 * Os_TE_769221 Os_TE_769163 Chr1 1101731 1101732 - RIRE3_LTR 12054 0.0031 (9/2872) 0 * Os_TE_769162 Os_TE_769162 Chr1 1101727 1101726 + RIRE3_LTR 12054 0.0028 (8/2866) 0 * Os_TE_769163 Os_TE_769143 Chr1 1093900 1093693 + ORSgTEMT01400024 215 0.6230 (1750/2809) 1 Intact Os_TE_769141 Os_TE_769141 Chr1 1093658 1093903 + ORSgTEMT01400032 215 0.6341 (1837/2897) 0.83 Intact Os_TE_769143 Os_TE_769140 Chr1 1093404 1093405 + COPIA2-LTR_OS 6433 0.0003 (1/2982) 0 * * Os_TE_769135 Chr1 1089813 1089814 - TELIA 141 0.0003 (1/2989) 0 * Os_TE_769134 Os_TE_769134 Chr1 1089805 1089804 + TELIA 141 0.0003 (1/2989) 0 * Os_TE_769135 Os_TE_769126 Chr1 1086055 1086054 - COPI2_LTR 4733 0.0007 (2/2771) 0 * * Os_TE_769124 Chr1 1085883 1085882 - OSLINE1-2 7128 0.0248 (65/2623) 0 * * Os_TE_769123 Chr1 1085613 1085614 + NDNA1TNA_OS 334 0.1230 (325/2642) 0 * Os_TE_769122 Os_TE_769122 Chr1 1085611 1085610 - NDNA1TNA_OS 334 0.1166 (305/2615) 0 * Os_TE_769123 Os_TE_769116 Chr1 1083521 1083522 - SZ-55_LTR 10318 0.0003 (1/2991) 0 * Os_TE_769115 Os_TE_769115 Chr1 1083517 1083516 + SZ-55_LTR 10318 0.0003 (1/2990) 0 * Os_TE_769116 Os_TE_769111 Chr1 1082811 1082812 + OSR3_LTR 5201 0.0003 (1/2990) 0 * Os_TE_769110 Os_TE_769110 Chr1 1082807 1082806 - OSR3_LTR 5201 0.0003 (1/2980) 0 * Os_TE_769111 Os_TE_769106 Chr1 1080238 1080237 + ORSgTETNOOT00072 203 0.0023 (7/2983) 0 * * Os_TE_769104 Chr1 1080054 1080053 + SINE9_OS 293 0.0020 (6/2963) 0 * * Os_TE_769098 Chr1 1077428 1077429 + MPING 430 0.0003 (1/2984) 0 * Os_TE_769097 Os_TE_769097 Chr1 1077426 1077425 - MPING 430 0.0003 (1/2990) 0 * Os_TE_769098 Os_TE_769092 Chr1 1077153 1077154 + INDITTO 263 0.0112 (26/2313) 0 * Os_TE_769091 Os_TE_769091 Chr1 1077151 1077150 - INDITTO 263 0.0103 (24/2328) 0 * Os_TE_769092 Os_TE_769089 Chr1 1077060 1077061 - INDITTO 263 0.3041 (909/2989) 0 * Os_TE_769088 Os_TE_769088 Chr1 1077058 1077057 + INDITTO 263 0.2794 (815/2917) 0 * Os_TE_769089 Os_TE_769086 Chr1 1075567 1075810 + ORSgTEMT01602051 240 0.8806 (2552/2898) 1 Intact * Os_TE_769083 Chr1 1071687 1071688 + MuDR2_OS 6770 0.0009 (2/2266) 0 * Os_TE_769082 Os_TE_769082 Chr1 1071679 1071678 - MuDR2_OS 6770 0.0013 (3/2291) 0 * Os_TE_769083 Os_TE_769080 Chr1 1071004 1071005 - TYPEU1 380 0.0154 (46/2979) 0 * Os_TE_769079 Os_TE_769079 Chr1 1070998 1070997 + TYPEU2 382 0.0155 (46/2970) 0 * Os_TE_769080 Os_TE_769078 Chr1 1070849 1070848 + STOWAWAY51_OS 246 0.0088 (26/2963) 0 * Os_TE_769077 Os_TE_769077 Chr1 1070843 1070844 + ORSgTEMT01601591 242 0.0075 (22/2921) 0 * Os_TE_769078 Os_TE_769066 Chr1 1064449 1064448 - RIREX_LTR 8828 0.1344 (396/2946) 0 * * Os_TE_769061 Chr1 1063668 1063667 - MDR2 6967 0.0846 (242/2860) 0 * * Os_TE_769059 Chr1 1063055 1063054 - ORSgTEMT01400014 209 0.0555 (166/2991) 0 * * Os_TE_769054 Chr1 1059894 1059895 + MDR2 6967 0.0170 (51/2997) 0 * * Os_TE_769047 Chr1 1054915 1054916 - COPIA2-LTR_OS 6433 0.0007 (2/2994) 0 * Os_TE_769046 Os_TE_769046 Chr1 1054911 1054910 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * Os_TE_769047 Os_TE_769043 Chr1 1054053 1054052 + SZ-52_LTR 13107 0.1428 (421/2948) 0 * * Os_TE_769042 Chr1 1053818 1053819 - ORSgTERT00200181 6815 0.0007 (2/2738) 0 * * Os_TE_769041 Chr1 1053348 1053347 - RETROSAT3_LTR 11537 0.0017 (5/2991) 0 * * Os_TE_769035 Chr1 1049325 1049326 - SC-8_LTR 4951 0.0003 (1/2963) 0 * Os_TE_769034 Os_TE_769034 Chr1 1049321 1049320 + ORSiTERTOOT00381 4988 0.0003 (1/2950) 0 * Os_TE_769035 Os_TE_769031 Chr1 1045926 1045927 - HARB-1_OS 5166 0.0054 (16/2942) 0 * * Os_TE_769029 Chr1 1045387 1045388 - RETRO1_LTR 8314 0.0108 (32/2953) 0 * Os_TE_769028 Os_TE_769028 Chr1 1045383 1045382 + RETRO2A_LTR 12895 0.0090 (25/2777) 0 * Os_TE_769029 Os_TE_769025 Chr1 1044048 1044049 + CASLET 354 0.4099 (1201/2930) 0 * Os_TE_769024 Os_TE_769024 Chr1 1044046 1044045 - ORSgTEMT00600085 364 0.4262 (1270/2980) 0 * Os_TE_769025 Os_TE_769023 Chr1 1043972 1043971 + ORSgTEMT00500512 153 0.3169 (817/2578) 0 * Os_TE_769022 Os_TE_769022 Chr1 1043968 1043969 - ORSgTEMT00501204 149 0.4233 (1261/2979) 0 * Os_TE_769023 Os_TE_769020 Chr1 1043888 1043887 - RIREX_LTR 8828 0.1432 (427/2982) 0 * * Os_TE_769019 Chr1 1043738 1043739 + OSTONOR1_LTR 6440 0.0003 (1/2990) 0 * * Os_TE_769016 Chr1 1043384 1042268 + SETARIA2 1142 0.6778 (1994/2942) 1 Intact Os_TE_769014 Os_TE_769014 Chr1 1042268 1043372 + SETARIA2 1142 0.6878 (2051/2982) 1 Intact Os_TE_769016 Os_TE_769003 Chr1 1040250 1040485 - ORSgTETNOOT02498 231 0.2095 (625/2983) 1 Intact * Os_TE_768998 Chr1 1038937 1038936 + RIRE2_LTR 11306 0.0632 (183/2895) 0 * * Os_TE_768976 Chr1 1034196 1034195 + RETROSAT2LTR 12796 0.0017 (5/2869) 0 * * Os_TE_768971 Chr1 1033406 1033186 - ORSgTEMT02400179 221 0.1163 (347/2983) 1 Intact Os_TE_768970 Os_TE_768970 Chr1 1033183 1033400 + ORSgTEMT02400034 225 0.1150 (342/2973) 1 Intact Os_TE_768971 Os_TE_768951 Chr1 1022183 1022184 - SC-8_LTR 4951 0.0007 (2/2988) 0 * Os_TE_768950 Os_TE_768950 Chr1 1022179 1022178 + SC-8_LTR 4951 0.0007 (2/2990) 0 * Os_TE_768951 Os_TE_768944 Chr1 1014358 1014359 - CLOUD-6 508 0.0012 (1/848) 0 * Os_TE_768943 Os_TE_768943 Chr1 1014350 1014349 - CLOUD-6 508 0.0012 (1/849) 0 * Os_TE_768944 Os_TE_768941 Chr1 1014136 1014135 + SINE1OS 127 0.6211 (1852/2982) 0 * * Os_TE_768939 Chr1 1013698 1013699 + SPMLIKE 10989 0.1162 (346/2977) 0 * Os_TE_768938 Os_TE_768938 Chr1 1013696 1013695 - SPMLIKE 10989 0.1193 (357/2993) 0 * Os_TE_768939 Os_TE_768934 Chr1 1013195 1013086 - TREP220 109 0.2816 (814/2891) 1 Intact * Os_TE_768923 Chr1 1003423 1003424 - SC-8_LTR 4951 0.0020 (6/2987) 0 * Os_TE_768922 Os_TE_768922 Chr1 1003419 1003418 + SC-8_LTR 4951 0.0020 (6/2984) 0 * Os_TE_768923 Os_TE_768915 Chr1 997831 997830 + ORSgTEMT01701672 139 0.0031 (5/1604) 0 * * Os_TE_768909 Chr1 994298 994297 + MuDR2_OS 6770 0.0022 (4/1778) 0 * * Os_TE_768907 Chr1 994014 994015 - ORSgTETNOOT00823 234 0.0029 (5/1753) 0 * * Os_TE_768879 Chr1 978069 978070 + RIRE2_LTR 11306 0.1700 (204/1200) 0 * Os_TE_768878 Os_TE_768878 Chr1 978065 978064 - RIRE2_LTR 11306 0.1742 (209/1200) 0 * Os_TE_768879 Os_TE_768877 Chr1 977663 977662 - ORSgTEMT00400006 152 0.0008 (1/1285) 0 * * Os_TE_768871 Chr1 973671 973672 + ORSiTERTOOT00226 792 0.0009 (1/1158) 0 * * Os_TE_768870 Chr1 972544 972545 - TELIA 141 0.0108 (13/1205) 0 * Os_TE_768869 Os_TE_768869 Chr1 972536 972535 + TELIA 141 0.0108 (13/1207) 0 * Os_TE_768870 Os_TE_768850 Chr1 963511 963364 - ORSgTEMT00500081 146 0.4463 (1173/2628) 1 Intact * Os_TE_768846 Chr1 962381 962382 - RIREX_LTR 8828 0.0004 (1/2822) 0 * Os_TE_768845 Os_TE_768845 Chr1 962377 962376 + RIREX_LTR 8828 0.0004 (1/2852) 0 * Os_TE_768846 Os_TE_768842 Chr1 961467 961466 - ORSgTEMT00501447 126 0.0025 (3/1204) 0 * * Os_TE_768841 Chr1 961240 961241 + OSTE15 1168 0.4687 (1026/2189) 0 * * Os_TE_768831 Chr1 957763 957764 + SZ-48LTR 3632 0.0125 (37/2957) 0 * * Os_TE_768830 Chr1 957687 957686 - GLUTEL1LIKE 273 0.0122 (36/2949) 0 * * Os_TE_768829 Chr1 957681 957682 - RIREX_LTR 8828 0.0391 (114/2912) 0 * Os_TE_768828 Os_TE_768828 Chr1 957677 957676 + RIREX_LTR 8828 0.0391 (114/2913) 0 * Os_TE_768829 Os_TE_768826 Chr1 957395 957394 - MERMITE18E 1528 0.0102 (30/2939) 0 * * Os_TE_768823 Chr1 955007 954751 - ORSgTEMT00900099 250 0.3280 (968/2951) 1 Intact Os_TE_768819 Os_TE_768819 Chr1 954749 955007 + ORSgTEMT00901844 250 0.3283 (969/2952) 1 Intact Os_TE_768823 Os_TE_768816 Chr1 954449 954217 - TREP215 239 0.6882 (1995/2899) 1 Intact * Os_TE_768808 Chr1 953845 939753 + ORSiTERTOOT00023 5086 0.3278 (968/2953) 1 Intact * Os_TE_768791 Chr1 944164 953170 - GYPSY1-LTR_OS 8900 0.6689 (996/1489) 1 Intact * Os_TE_768790 Chr1 940229 940230 + RIRE2_LTR 11306 0.3229 (320/991) 0 * Os_TE_768789 Os_TE_768789 Chr1 940225 940224 - RIRE2_LTR 11306 0.3215 (318/989) 0 * Os_TE_768790 Os_TE_768787 Chr1 939753 953845 - ORSiTERTOOT00023 5086 0.3306 (971/2937) 1 Intact * Os_TE_768786 Chr1 938534 938535 + RIREX_LTR 8828 0.1047 (309/2952) 0 * Os_TE_768785 Os_TE_768785 Chr1 938530 938529 - RIREX_LTR 8828 0.1056 (312/2954) 0 * Os_TE_768786 Os_TE_768784 Chr1 938006 938007 - SC-8_LTR 4951 0.0003 (1/2870) 0 * * Os_TE_768781 Chr1 937625 937292 + NDNA1TNA_OS 334 0.1617 (478/2956) 1 Intact Os_TE_768779 Os_TE_768779 Chr1 937289 937626 + ORSgTEMT00101674 340 0.1628 (481/2954) 1 Intact Os_TE_768781 Os_TE_768769 Chr1 934927 934926 - ORSiTETNOOT00147 3619 0.0443 (97/2189) 0 * * Os_TE_768763 Chr1 929451 929452 + MERMITE18E 1528 0.1997 (416/2083) 0 * * Os_TE_768749 Chr1 920799 920798 + MuDR3_OS 8604 0.0321 (91/2835) 0 * * Os_TE_768746 Chr1 916688 916541 + TREP220 109 0.8243 (1234/1497) 1 Intact Os_TE_768745 Os_TE_768745 Chr1 916540 916688 + STOWAWAY47_OS 148 0.4199 (1218/2901) 1 Intact Os_TE_768746 Os_TE_768709 Chr1 879513 879388 + ORSgTEMT01700791 134 0.6522 (1667/2556) 1 Intact * Os_TE_768702 Chr1 874158 874157 + ORSgTETNOOT00908 242 0.0799 (207/2592) 0 * * Os_TE_768700 Chr1 874058 874057 - ORSgTEMT03000024 384 0.0077 (20/2589) 0 * * Os_TE_768682 Chr1 871242 871854 - MuDR4_OS 7610 0.1227 (309/2519) 1 Intact * Os_TE_768681 Chr1 871203 871204 + ORSgTERT00200216 776 0.0004 (1/2310) 0 * * Os_TE_768678 Chr1 871061 870047 - MERMITE18E 1528 0.8863 (2144/2419) 1 Intact * Os_TE_768667 Chr1 865567 865428 + ORSgTEMT00500201 140 0.5817 (1484/2551) 1 Intact Os_TE_768666 Os_TE_768666 Chr1 865422 865564 + ORSgTEMT00502327 143 0.5847 (1494/2555) 1 Intact Os_TE_768667 Os_TE_768665 Chr1 865151 865150 + ORSgTETNOOT01930 140 0.0004 (1/2567) 0 * * Os_TE_768655 Chr1 860646 860645 + STOWAWAY51_OS 246 0.0004 (1/2515) 0 * * Os_TE_768652 Chr1 860608 860609 + STOWAWAY51_OS 246 0.0005 (1/2138) 0 * * Os_TE_768649 Chr1 859436 859209 - ORSgTEMT01600152 226 0.8542 (2526/2957) 1 Intact * Os_TE_768638 Chr1 855557 855556 + ORSgTEMT01601122 212 0.1623 (478/2946) 0 * Os_TE_768637 Os_TE_768637 Chr1 855556 855557 - STOWAWAY21_OS 243 0.1538 (450/2925) 0 * Os_TE_768638 Os_TE_768634 Chr1 853806 853807 - TYPEM 227 0.0007 (2/2976) 0 * Os_TE_768633 Os_TE_768633 Chr1 853805 853804 - ORSgTEMT02400179 221 0.0007 (2/2940) 0 * Os_TE_768634 Os_TE_768631 Chr1 853404 853405 - LINE-7_OS 7090 0.2688 (789/2935) 0 * * Os_TE_768629 Chr1 851889 851888 - ORSgTEMT01601432 239 0.0242 (71/2936) 0 * * Os_TE_768622 Chr1 849926 848127 - MERMITE18E 1528 0.2966 (605/2040) 1 Intact * Os_TE_768616 Chr1 847813 847814 - RIRE2_LTR 11306 0.0056 (12/2124) 0 * Os_TE_768615 Os_TE_768615 Chr1 847809 847808 + RIRE2_LTR 11306 0.0044 (9/2064) 0 * Os_TE_768616 Os_TE_768613 Chr1 845199 845200 - OSTE14 885 0.0776 (226/2912) 0 * Os_TE_768612 Os_TE_768612 Chr1 845197 845196 - OSTE14 885 0.1553 (230/1481) 0 * Os_TE_768613 Os_TE_768602 Chr1 840843 840842 + COPIA2-LTR_OS 6433 0.0003 (1/2900) 0 * * Os_TE_768546 Chr1 802102 802704 - ORSiTETNOOT00185 603 0.0053 (12/2263) -1 Intact * Os_TE_768508 Chr1 793527 793528 - ORSgTEMT01602676 227 0.0020 (3/1486) 0 * * Os_TE_768503 Chr1 789995 789996 + COPIA2-LTR_OS 6433 0.0007 (1/1492) 0 * * Os_TE_768501 Chr1 789074 789075 - SC-8_LTR 4951 0.0007 (1/1463) 0 * Os_TE_768500 Os_TE_768500 Chr1 789070 789069 + SC-8_LTR 4951 0.0007 (1/1467) 0 * Os_TE_768501 Os_TE_768487 Chr1 780043 779763 + STOWAWAY11_OS 292 0.8060 (1404/1742) 1 Intact * Os_TE_768475 Chr1 769627 769628 - SC-3_LTR 5748 0.0137 (37/2705) 0 * * Os_TE_768466 Chr1 765975 765976 + ORSgTEMT01400031 216 0.5021 (1328/2645) 0 * * Os_TE_768465 Chr1 765781 765541 - ORSgTEMT01400019 216 0.5526 (1461/2644) 1 Intact Os_TE_768462 Os_TE_768462 Chr1 765540 765747 - ORSgTEMT01400022 212 0.5595 (1491/2665) 1 Intact Os_TE_768465 Os_TE_768460 Chr1 765476 765475 - ORSgTEMT00501356 145 0.3197 (855/2674) 0 * * Os_TE_768456 Chr1 764517 764518 + MERMITE18B 1306 0.4673 (1170/2504) 0 * Os_TE_768455 Os_TE_768455 Chr1 764511 764510 - MERMITE18B 1306 0.4826 (1245/2580) 0 * Os_TE_768456 Os_TE_768435 Chr1 752050 750915 - SZ-5LTR 1223 0.1322 (315/2383) 1 Intact * Os_TE_768430 Chr1 750646 750645 + F524 291 0.5535 (1330/2403) 0 * * Os_TE_768429 Chr1 749415 749416 + RIREX_LTR 8828 0.0003 (1/2995) 0 * * Os_TE_768424 Chr1 746914 746915 - ORSgTEMT01701348 105 0.2639 (790/2993) 0 * * Os_TE_768422 Chr1 746431 746430 - TREP215 239 0.2522 (748/2966) 0 * * Os_TE_768418 Chr1 744643 744644 + SC-8_LTR 4951 0.0007 (2/2994) 0 * Os_TE_768417 Os_TE_768417 Chr1 744639 744638 - SC-8_LTR 4951 0.0009 (2/2283) 0 * Os_TE_768418 Os_TE_768411 Chr1 741835 741834 - OSTE24 683 0.0975 (291/2985) 0 * * Os_TE_768408 Chr1 740246 740247 + ORSiTERTOOT00296 5553 0.0003 (1/2991) 0 * * Os_TE_768403 Chr1 737635 737634 - ORSgTEMT01900052 340 0.3137 (938/2990) 0 * * Os_TE_768400 Chr1 734195 734196 - SC-8_LTR 4951 0.0016 (2/1287) 0 * Os_TE_768399 Os_TE_768399 Chr1 734191 734190 + SC-8_LTR 4951 0.0016 (2/1288) 0 * Os_TE_768400 Os_TE_768398 Chr1 733975 733974 + STOWAWAY51_OS 246 0.1439 (184/1279) 0 * Os_TE_768397 Os_TE_768397 Chr1 733969 733970 - STOWAWAY51_OS 246 0.1452 (184/1267) 0 * Os_TE_768398 Os_TE_768393 Chr1 728748 728749 + TYPEU2 382 0.1526 (412/2699) 0 * Os_TE_768392 Os_TE_768392 Chr1 728742 728741 - TYPEU1 380 0.1590 (463/2912) 0 * Os_TE_768393 Os_TE_768387 Chr1 727481 726798 - OSTE24 683 0.0846 (249/2943) 1 Intact Os_TE_768386 Os_TE_768386 Chr1 726799 727481 - OSTE24 683 0.0933 (277/2970) 1 Intact Os_TE_768387 Os_TE_768380 Chr1 726253 726252 + ORSgTEMT01602051 240 0.2492 (738/2961) 0 * Os_TE_768379 Os_TE_768379 Chr1 726250 726251 - TREP215 239 0.2525 (748/2962) 0 * Os_TE_768380 Os_TE_768364 Chr1 718975 718974 - RPO_OS 1983 0.2259 (659/2917) 0 * * Os_TE_768360 Chr1 716796 715340 + SZ-55_LTR 10318 0.4189 (1248/2979) 1 Solo_LTR Os_TE_768354 Os_TE_768354 Chr1 715340 716796 - SZ-55_LTR 10318 0.4160 (1231/2959) 1 Solo_LTR Os_TE_768360 Os_TE_768349 Chr1 689612 689613 + STOWAWAY11_OS 292 0.1254 (362/2887) 0 * Os_TE_768348 Os_TE_768348 Chr1 689611 689610 - STOWAWAY11_OS 292 0.1585 (472/2978) 0 * Os_TE_768349 Os_TE_768347 Chr1 689551 689552 - F569 228 0.0197 (58/2944) 0 * * Os_TE_768345 Chr1 689429 689428 + SZ-55_LTR 10318 0.0003 (1/2928) 0 * * Os_TE_768335 Chr1 688190 688191 + ORSgTEMT01701145 147 0.0016 (3/1873) 0 * * Os_TE_768333 Chr1 688094 688093 - ORSgTEMT00900099 250 0.4579 (1088/2376) 0 * * Os_TE_768330 Chr1 687969 687968 - MPING 430 0.0004 (1/2671) 0 * * Os_TE_768324 Chr1 685188 678432 + MuDR2_OS 6770 0.3477 (857/2465) 1 Intact Os_TE_768323 Os_TE_768323 Chr1 678432 685188 - MuDR2_OS 6770 0.4070 (934/2295) 1 Intact Os_TE_768324 Os_TE_768322 Chr1 677818 677479 - OLO24 345 0.8571 (2550/2975) 1 Intact * Os_TE_768312 Chr1 676229 676440 + ORSgTEMT01400032 215 0.8509 (2460/2891) 1 Intact Os_TE_768311 Os_TE_768311 Chr1 676165 676014 + TNR2A 152 0.8487 (2451/2888) 1 Intact Os_TE_768312 Os_TE_768304 Chr1 675121 675122 - STOWAWAY51_OS 246 0.1649 (479/2905) 0 * * Os_TE_768302 Chr1 675067 675068 - F569 228 0.0014 (4/2877) 0 * Os_TE_768301 Os_TE_768301 Chr1 675065 675064 + F569 228 0.0014 (4/2870) 0 * Os_TE_768302 Os_TE_768300 Chr1 675003 674764 + STOWAWAY51_OS 246 0.8525 (2462/2888) 1 Intact * Os_TE_768298 Chr1 674704 674705 + STOWAWAY18_OS 216 0.1770 (470/2655) 0 * * Os_TE_768295 Chr1 674489 673975 + ORSgTEMT01400032 215 0.8428 (2428/2881) 1 Intact Os_TE_768291 Os_TE_768291 Chr1 673961 674466 - STOWAWAY9_OS 235 0.8663 (2546/2939) 1 Intact Os_TE_768295 Os_TE_768286 Chr1 673742 673743 - ORSgTEMT00901723 248 0.1614 (481/2980) 0 * * Os_TE_768285 Chr1 673658 673659 - TEMPINDAS 4259 0.1798 (430/2391) 0 * * Os_TE_768283 Chr1 673578 673579 - RIREX_LTR 8828 0.1822 (437/2399) 0 * Os_TE_768282 Os_TE_768282 Chr1 673574 673573 + RIREX_LTR 8828 0.1812 (435/2400) 0 * Os_TE_768283 Os_TE_768278 Chr1 672408 672409 + ORSgTEMT01601591 242 0.0342 (49/1432) 0 * * Os_TE_768277 Chr1 671670 671671 - ORSgTEMT00600304 361 0.5323 (1534/2882) 0 * * Os_TE_768274 Chr1 671468 660820 - ORSgTERT00201216 11284 0.3461 (949/2742) 1 Intact * Os_TE_768263 Chr1 658912 658911 + ORSgTEMT01602250 243 0.1513 (257/1699) 0 * * Os_TE_768259 Chr1 657014 657013 + HARB-1_OS 5166 0.0003 (1/2972) 0 * * Os_TE_768255 Chr1 656154 656153 - MDM1 326 0.0299 (87/2905) 0 * * Os_TE_768247 Chr1 654512 654511 + ORSgTEMT01601122 212 0.0287 (84/2923) 0 * Os_TE_768246 Os_TE_768246 Chr1 654511 654512 + ORSgTEMT01601122 212 0.0294 (87/2961) 0 * Os_TE_768247 Os_TE_768241 Chr1 652571 652572 + RIREX_LTR 8828 0.0167 (50/2995) 0 * Os_TE_768240 Os_TE_768240 Chr1 652567 652566 - RIREX_LTR 8828 0.0160 (48/2994) 0 * Os_TE_768241 Os_TE_768239 Chr1 652286 652287 + MDR2 6967 0.0081 (20/2474) 0 * Os_TE_768238 Os_TE_768238 Chr1 652276 652275 - MDR2 6967 0.0077 (19/2471) 0 * Os_TE_768239 Os_TE_768229 Chr1 647584 647903 + OLO24C 356 0.8249 (2468/2992) 1 Intact * Os_TE_768225 Chr1 646371 646372 - RIREX_LTR 8828 0.0003 (1/2998) 0 * Os_TE_768224 Os_TE_768224 Chr1 646367 646366 + RIREX_LTR 8828 0.0003 (1/2998) 0 * Os_TE_768225 Os_TE_768223 Chr1 645465 645466 - MERMITEJ 1498 0.0028 (7/2513) 0 * Os_TE_768222 Os_TE_768222 Chr1 645457 645456 - MERMITEJ 1498 0.0028 (7/2516) 0 * Os_TE_768223 Os_TE_768189 Chr1 630069 630070 + RIREX_LTR 8828 0.0003 (1/2997) 0 * Os_TE_768188 Os_TE_768188 Chr1 630065 630064 - RIREX_LTR 8828 0.0003 (1/2998) 0 * Os_TE_768189 Os_TE_768181 Chr1 628243 628244 + STOWAWAY51_OS 246 0.0003 (1/2996) 0 * * Os_TE_768179 Chr1 626031 626032 - MPING 430 0.0041 (12/2919) 0 * Os_TE_768178 Os_TE_768178 Chr1 626029 626028 + MPING 430 0.0041 (12/2931) 0 * Os_TE_768179 Os_TE_768165 Chr1 617788 617787 + CASTAWAY-3 314 0.0010 (3/2910) 0 * * Os_TE_768164 Chr1 617759 617758 + RIRE2_LTR 11306 0.1457 (423/2903) 0 * * Os_TE_768160 Chr1 616588 616589 + ORSiTERTOOT00226 792 0.0007 (2/2861) 0 * Os_TE_768159 Os_TE_768159 Chr1 616584 616583 - SZ-22_LTR 4403 0.0003 (1/2887) 0 * Os_TE_768160 Os_TE_768156 Chr1 616205 615982 - ORSgTEMT01601834 234 0.8635 (2542/2944) 1 Intact Os_TE_768155 Os_TE_768155 Chr1 615976 616200 + ORSgTEMT01600227 232 0.8610 (2490/2892) 1 Intact Os_TE_768156 Os_TE_768153 Chr1 615901 615663 + ORSgTEMT01602051 240 0.4303 (1237/2875) 1 Intact Os_TE_768152 Os_TE_768152 Chr1 615663 615901 - TREP215 239 0.4299 (1232/2866) -1 Intact Os_TE_768153 Os_TE_768148 Chr1 615308 615307 - INDITTO 263 0.0003 (1/2973) 0 * * Os_TE_768144 Chr1 613513 613512 + STOWAWAY51_OS 246 0.0007 (2/2815) 0 * * Os_TE_768142 Chr1 613151 613152 - HATOS1 3488 0.1700 (392/2306) 0 * * Os_TE_768140 Chr1 611761 611762 + SPMLIKE 10989 0.0209 (53/2541) 0 * * Os_TE_768132 Chr1 609837 609838 + RPO_OS 1983 0.0004 (1/2757) 0 * * Os_TE_768131 Chr1 609650 609651 - SEVERIN-2 1952 0.1350 (398/2949) 0 * * Os_TE_768130 Chr1 609449 609450 - ORSgTEMT02400179 221 0.0003 (1/2894) 0 * * Os_TE_768123 Chr1 606633 606632 + OSTE33 1012 0.0007 (2/2859) 0 * * Os_TE_768119 Chr1 605965 605966 + SINE1R5_OS 121 0.3365 (1007/2993) 0 * * Os_TE_768116 Chr1 598953 598952 - ORSgTEMT01400022 212 0.1380 (413/2992) 0 * Os_TE_768115 Os_TE_768115 Chr1 598949 598950 - ORSgTEMT01400014 209 0.1351 (403/2982) 0 * Os_TE_768116 Os_TE_768111 Chr1 597805 598004 - EXPLORER 210 0.8640 (2490/2882) 1 Intact * Os_TE_768110 Chr1 596866 596865 + ORSgTEMT01602181 239 0.0007 (2/2935) 0 * Os_TE_768109 Os_TE_768109 Chr1 596863 596864 - ORSgTEMT01600578 239 0.0008 (2/2609) 0 * Os_TE_768110 Os_TE_768103 Chr1 594326 594182 + ORSgTEMT00500411 151 0.8661 (2594/2995) 1 Intact Os_TE_768101 Os_TE_768101 Chr1 594176 594324 + ORSgTEMT00501601 153 0.8704 (2605/2993) 1 Intact Os_TE_768103 Os_TE_768097 Chr1 584168 584167 - ORSgTEMT01700216 124 0.1407 (421/2992) 0 * Os_TE_768096 Os_TE_768096 Chr1 584109 584110 + ORSgTEMT01602626 237 0.1392 (416/2989) 0 * Os_TE_768097 Os_TE_768094 Chr1 583954 583955 - HARB-1_OS 5166 0.0007 (2/2995) 0 * Os_TE_768093 Os_TE_768093 Chr1 583952 583951 + HARB-1_OS 5166 0.0007 (2/2994) 0 * Os_TE_768094 Os_TE_768091 Chr1 583320 583319 - HELITRON7_OS 10153 0.0007 (2/2915) 0 * Os_TE_768090 Os_TE_768090 Chr1 583304 583305 + HELITRON7_OS 10153 0.0007 (2/2992) 0 * Os_TE_768091 Os_TE_768088 Chr1 581866 581867 + OSTONOR1_LTR 6440 0.0005 (1/2116) 0 * Os_TE_768087 Os_TE_768087 Chr1 581862 581861 - ORSiTERT00100062 5674 0.0003 (1/2999) 0 * Os_TE_768088 Os_TE_768086 Chr1 581461 581117 - OLO24 345 0.4448 (1333/2997) 1 Intact Os_TE_768084 Os_TE_768084 Chr1 581117 581461 + OLO24 345 0.4431 (1328/2997) 1 Intact Os_TE_768086 Os_TE_768082 Chr1 580943 580942 - OLO24 345 0.0594 (178/2995) 0 * * Os_TE_768081 Chr1 580789 580790 - TELIA 141 0.0084 (25/2985) 0 * Os_TE_768080 Os_TE_768080 Chr1 580781 580780 + TELIA 141 0.0084 (25/2987) 0 * Os_TE_768081 Os_TE_768074 Chr1 579489 579490 + COPIA2-LTR_OS 6433 0.0003 (1/2994) 0 * * Os_TE_768051 Chr1 573847 573846 - STOWAWAY51_OS 246 0.0913 (261/2859) 0 * * Os_TE_768040 Chr1 570506 570507 - SC-8_LTR 4951 0.0003 (1/2989) 0 * Os_TE_768039 Os_TE_768039 Chr1 570502 570501 + SC-8_LTR 4951 0.0003 (1/2992) 0 * Os_TE_768040 Os_TE_768025 Chr1 562074 562075 + MERMITEB 1610 0.0003 (1/2993) 0 * * Os_TE_768015 Chr1 553988 553987 + ORSgTETNOOT01930 140 0.0003 (1/2997) 0 * Os_TE_768014 Os_TE_768014 Chr1 553987 553988 - ORSgTEMT00501356 145 0.0003 (1/2996) 0 * Os_TE_768015 Os_TE_768011 Chr1 552896 552895 - SC-8_LTR 4951 0.0003 (1/2983) 0 * * Os_TE_768000 Chr1 545649 545650 + COPI2_LTR 4733 0.0003 (1/2993) 0 * Os_TE_767999 Os_TE_767999 Chr1 545645 545644 - COPI2_LTR 4733 0.0003 (1/2994) 0 * Os_TE_768000 Os_TE_767987 Chr1 540628 540629 + COPIA2-LTR_OS 6433 0.0003 (1/2999) 0 * Os_TE_767986 Os_TE_767986 Chr1 540624 540623 - COPIA2-LTR_OS 6433 0.0003 (1/2998) 0 * Os_TE_767987 Os_TE_767981 Chr1 537681 537680 + STOWAWAY51_OS 246 0.0010 (3/2994) 0 * Os_TE_767980 Os_TE_767980 Chr1 537675 537676 - STOWAWAY51_OS 246 0.0010 (3/2989) 0 * Os_TE_767981 Os_TE_767979 Chr1 536916 536917 + QINNIU 528 0.0010 (3/2961) 0 * Os_TE_767978 Os_TE_767978 Chr1 536909 536908 - HATOS1 3488 0.0017 (5/2964) 0 * Os_TE_767979 Os_TE_767972 Chr1 535493 535492 - ORSgTEMT01601493 303 0.0017 (5/2948) 0 * * Os_TE_767966 Chr1 534769 534768 - NDNA1TNA_OS 334 0.0003 (1/2934) 0 * * Os_TE_767964 Chr1 534652 534653 + NDNA1TNA_OS 334 0.3261 (974/2987) 0 * Os_TE_767963 Os_TE_767963 Chr1 534651 534650 + ORSgTEMT00101341 314 0.3197 (950/2972) 0 * Os_TE_767964 Os_TE_767962 Chr1 534557 534558 - COPI2_LTR 4733 0.0003 (1/2952) 0 * Os_TE_767961 Os_TE_767961 Chr1 534553 534552 + COPI2_LTR 4733 0.0003 (1/2991) 0 * Os_TE_767962 Os_TE_767950 Chr1 530493 530494 + BAJIELTR 4500 0.0029 (5/1699) 0 * * Os_TE_767949 Chr1 530108 530109 - ORSgTEMT01601432 239 0.0033 (10/2987) 0 * * Os_TE_767947 Chr1 529578 529579 - COPIA2-LTR_OS 6433 0.0003 (1/2983) 0 * Os_TE_767946 Os_TE_767946 Chr1 529574 529573 + COPIA2-LTR_OS 6433 0.0003 (1/2978) 0 * Os_TE_767947 Os_TE_767935 Chr1 518397 518396 + ORSgTERT00200961 124 0.0003 (1/2997) 0 * * Os_TE_767930 Chr1 509300 509299 + TYPEU4 402 0.0003 (1/2998) 0 * * Os_TE_767895 Chr1 495105 495106 + CASLET 354 0.0104 (31/2992) 0 * Os_TE_767894 Os_TE_767894 Chr1 495104 495103 - CASTAWAY 364 0.0104 (31/2995) 0 * Os_TE_767895 Os_TE_767890 Chr1 492900 492901 - RETROSAT2LTRA 3112 0.0579 (76/1312) 0 * * Os_TE_767873 Chr1 486395 486394 - NDNA1TNA_OS 334 0.0003 (1/2992) 0 * * Os_TE_767860 Chr1 481544 481545 - ORSiTERT00100062 5674 0.0003 (1/2993) 0 * Os_TE_767859 Os_TE_767859 Chr1 481540 481539 + OSTONOR1_LTR 6440 0.0003 (1/2997) 0 * Os_TE_767860 Os_TE_767858 Chr1 481510 481509 + NDNA1TNA_OS 334 0.0134 (40/2993) 0 * * Os_TE_767852 Chr1 478276 478277 - HARB-1_OS 5166 0.0003 (1/2982) 0 * Os_TE_767851 Os_TE_767851 Chr1 478274 478273 + HARB-1_OS 5166 0.0003 (1/2987) 0 * Os_TE_767852 Os_TE_767848 Chr1 477981 465119 - RETRO1_LTR 8314 0.5375 (1575/2930) 1 Intact Os_TE_767840 Os_TE_767840 Chr1 465119 477981 + RETRO2A_LTR 12895 0.5336 (1574/2950) 1 Intact Os_TE_767848 Os_TE_767837 Chr1 464101 464100 - ORSgTEMT01601208 238 0.0003 (1/2953) 0 * Os_TE_767836 Os_TE_767836 Chr1 464096 464097 + ORSgTEMT01601488 239 0.0003 (1/2952) 0 * Os_TE_767837 Os_TE_767835 Chr1 463407 463408 + ORSgTETNOOT00908 242 0.2359 (705/2989) 0 * Os_TE_767834 Os_TE_767834 Chr1 463403 463402 + ORSgTETNOOT01219 231 0.2348 (701/2986) 0 * Os_TE_767835 Os_TE_767832 Chr1 463361 463360 - ORSgTEMT01602292 239 0.0003 (1/2967) 0 * * Os_TE_767808 Chr1 458792 458793 + INDITTO 263 0.0076 (22/2903) 0 * Os_TE_767807 Os_TE_767807 Chr1 458790 458789 + ORSgTETNOOT00221 261 0.0086 (22/2553) 0 * Os_TE_767808 Os_TE_767806 Chr1 458442 458443 + CACTA-H 1152 0.0003 (1/2941) 0 * * Os_TE_767803 Chr1 458041 458040 - RETRO1_LTR 8314 0.0066 (19/2858) 0 * * Os_TE_767799 Chr1 457412 457411 - TREP215 239 0.4827 (1426/2954) 0 * * Os_TE_767790 Chr1 454720 454719 + INDITTO 263 0.0003 (1/2965) 0 * * Os_TE_767787 Chr1 454541 454683 - ORSgTEMT00501511 150 0.5355 (1591/2971) 1 Intact * Os_TE_767784 Chr1 453696 453697 - ORSgTEMT00501204 149 0.4862 (1447/2976) 0 * * Os_TE_767782 Chr1 452932 452931 + TEOS1 476 0.4756 (1373/2887) 0 * * Os_TE_767780 Chr1 452679 452479 - ORSgTEMT01400039 200 0.5363 (1565/2918) 1 Intact Os_TE_767779 Os_TE_767779 Chr1 452477 452690 - STOWAWAY9_OS 235 0.5305 (1556/2933) 1 Intact Os_TE_767780 Os_TE_767771 Chr1 451918 451917 + ORSgTEMT00500560 148 0.1106 (198/1790) 0 * * Os_TE_767770 Chr1 451881 451880 + ENSPM4_OS 11610 0.0047 (13/2770) 0 * * Os_TE_767757 Chr1 448259 448258 + BUHUI 375 0.0022 (4/1816) 0 * * Os_TE_767753 Chr1 437450 437451 + TRUNCATOR2_LTR 2904 0.0013 (4/2983) 0 * * Os_TE_767731 Chr1 426404 426405 - SC-8_LTR 4951 0.0004 (1/2780) 0 * Os_TE_767730 Os_TE_767730 Chr1 426400 426399 + SC-8_LTR 4951 0.0004 (1/2778) 0 * Os_TE_767731 Os_TE_767729 Chr1 426397 426398 - SC-3_LTR 5748 0.0004 (1/2821) 0 * Os_TE_767728 Os_TE_767728 Chr1 426393 426392 + ORSiTERTOOT00296 5553 0.0007 (2/2775) 0 * Os_TE_767729 Os_TE_767720 Chr1 421516 421517 + RIREX_LTR 8828 0.0003 (1/2988) 0 * * Os_TE_767715 Chr1 420523 420524 + HARB-1_OS 5166 0.0004 (1/2756) 0 * Os_TE_767714 Os_TE_767714 Chr1 420521 420520 - HARB-1_OS 5166 0.0004 (1/2719) 0 * Os_TE_767715 Os_TE_767708 Chr1 412568 412567 + TWIF 586 0.0014 (4/2789) 0 * * Os_TE_767696 Chr1 408569 408570 + COPI2_LTR 4733 0.0023 (7/2991) 0 * Os_TE_767695 Os_TE_767695 Chr1 408565 408564 - COPI2_LTR 4733 0.0030 (9/2994) 0 * Os_TE_767696 Os_TE_767694 Chr1 407902 407903 + SEVERIN-2 1952 0.0064 (19/2962) 0 * * Os_TE_767691 Chr1 406283 405790 - MuDR4_OS 7610 0.5160 (1531/2967) 1 Intact Os_TE_767690 Os_TE_767690 Chr1 405789 406282 - MuDR4_OS 7610 0.5214 (1559/2990) 1 Intact Os_TE_767691 Os_TE_767689 Chr1 405729 405728 - ORSgTEMT02400246 177 0.3363 (1005/2988) 0 * Os_TE_767688 Os_TE_767688 Chr1 405689 405690 - ORSgTEMT02400092 225 0.3371 (1009/2993) 0 * Os_TE_767689 Os_TE_767686 Chr1 405123 403654 - ORSiTERT00400044 484 0.5449 (1609/2953) 1 Intact * Os_TE_767683 Chr1 402811 402810 + ORSgTEMT01601934 207 0.0040 (12/2982) 0 * Os_TE_767682 Os_TE_767682 Chr1 402808 402809 + ORSgTEMT01601934 207 0.0047 (14/2982) 0 * Os_TE_767683 Os_TE_767680 Chr1 401012 400774 + ORSgTEMT01602181 239 0.5175 (1537/2970) 1 Intact * Os_TE_767676 Chr1 399692 399691 + ORSgTEMT01601934 207 0.0047 (14/2988) 0 * * Os_TE_767664 Chr1 396858 397096 + ORSgTEMT01602181 239 0.5261 (1562/2969) 1 Intact * Os_TE_767646 Chr1 381032 381031 + SINE03_OS 360 0.0003 (1/2967) 0 * * Os_TE_767635 Chr1 365484 365485 - SC-8_LTR 4951 0.0054 (16/2957) 0 * Os_TE_767634 Os_TE_767634 Chr1 365480 365479 + SC-8_LTR 4951 0.0057 (17/2960) 0 * Os_TE_767635 Os_TE_767612 Chr1 346743 346744 + ORSiTERTOOT00296 5553 0.0007 (2/2985) 0 * Os_TE_767611 Os_TE_767611 Chr1 346739 346738 - SC-3_LTR 5748 0.0007 (2/2979) 0 * Os_TE_767612 Os_TE_767601 Chr1 339446 339447 + STOWAWAY43_OS 233 0.0003 (1/2983) 0 * * Os_TE_767583 Chr1 332424 332425 - MERMITE18B 1306 0.0080 (24/2997) 0 * * Os_TE_767580 Chr1 329486 329487 + COPIA2-LTR_OS 6433 0.0003 (1/2977) 0 * Os_TE_767579 Os_TE_767579 Chr1 329482 329481 - COPIA2-LTR_OS 6433 0.0003 (1/2997) 0 * Os_TE_767580 Os_TE_767578 Chr1 328944 328943 + ORSgTEMT01702268 154 0.0083 (25/2998) 0 * Os_TE_767577 Os_TE_767577 Chr1 328941 328942 - ORSgTEMT01701254 154 0.0080 (24/2997) 0 * Os_TE_767578 Os_TE_767569 Chr1 324152 324153 - ORSgTEMT03000049 380 0.0040 (12/2988) 0 * Os_TE_767568 Os_TE_767568 Chr1 324144 324143 - TYPEU 362 0.0047 (14/2987) 0 * Os_TE_767569 Os_TE_767564 Chr1 319625 319626 - MERMITEB 1610 0.4170 (1156/2772) 0 * Os_TE_767563 Os_TE_767563 Chr1 319622 319621 + MERMITEB 1610 0.4556 (1348/2959) 0 * Os_TE_767564 Os_TE_767561 Chr1 318586 318587 + INDITTO 263 0.0046 (13/2849) 0 * * Os_TE_767544 Chr1 316957 316956 + ORSiTEMT01000008 242 0.3128 (869/2778) 0 * * Os_TE_767540 Chr1 316081 316080 - TNR2A 152 0.0003 (1/2993) 0 * * Os_TE_767533 Chr1 314504 314505 + RETRO2A_LTR 12895 0.0003 (1/2901) 0 * Os_TE_767532 Os_TE_767532 Chr1 314500 314499 - RETRO1_LTR 8314 0.0003 (1/2895) 0 * Os_TE_767533 Os_TE_767531 Chr1 313224 313225 - COPIA2-LTR_OS 6433 0.0003 (1/2863) 0 * Os_TE_767530 Os_TE_767530 Chr1 313220 313219 + COPIA2-LTR_OS 6433 0.0004 (1/2792) 0 * Os_TE_767531 Os_TE_767529 Chr1 312734 312733 + ORSgTEMT00500476 150 0.0676 (202/2990) 0 * * Os_TE_767525 Chr1 309477 309476 + ORSgTEMT01601591 242 0.0017 (5/2923) 0 * * Os_TE_767495 Chr1 301652 301389 + STOWAWAY11_OS 292 0.5603 (1676/2991) 1 Intact Os_TE_767493 Os_TE_767493 Chr1 301386 301652 - STOWAWAY11_OS 292 0.6009 (1683/2801) 1 Intact Os_TE_767495 Os_TE_767415 Chr1 273077 273078 + MPING 430 0.0003 (1/2980) 0 * Os_TE_767414 Os_TE_767414 Chr1 273074 273073 - MPING 430 0.0003 (1/2981) 0 * Os_TE_767415 Os_TE_767411 Chr1 272939 272709 + ORSgTETNOOT01219 231 0.5646 (1679/2974) 1 Intact Os_TE_767410 Os_TE_767410 Chr1 272705 272945 + ORSgTETNOOT00908 242 0.5530 (1628/2944) 1 Intact Os_TE_767411 Os_TE_767404 Chr1 272252 272251 + ORSgTEMT01601591 242 0.0032 (9/2807) 0 * * Os_TE_767400 Chr1 271531 271530 - ORSgTEMT01400022 212 0.3851 (1150/2986) 0 * * Os_TE_767386 Chr1 269314 269313 - ORSiTETNOOT00199 3501 0.0003 (1/2933) 0 * * Os_TE_767330 Chr1 239171 238837 + NDNA1TNA_OS 334 0.6963 (1653/2374) 1 Intact Os_TE_767329 Os_TE_767329 Chr1 238835 239171 + ORSgTEMT00100531 325 0.7559 (1623/2147) 1 Intact Os_TE_767330 Os_TE_767300 Chr1 227124 227123 - TNR2A 152 0.0003 (1/2984) 0 * * Os_TE_767299 Chr1 227026 227025 + ORSiTERTOOT00112 4608 0.0004 (1/2785) 0 * * Os_TE_767298 Chr1 226863 226864 + MDR2 6967 0.0027 (8/2976) 0 * Os_TE_767297 Os_TE_767297 Chr1 226855 226854 - MDR2 6967 0.0024 (7/2976) 0 * Os_TE_767298 Os_TE_767284 Chr1 222632 222633 - RETRO2_LTR 12874 0.0071 (21/2978) 0 * Os_TE_767283 Os_TE_767283 Chr1 222628 222627 + RETRO2_LTR 12874 0.0070 (21/2988) 0 * Os_TE_767284 Os_TE_767281 Chr1 222472 222471 + CRATA 4786 0.0003 (1/2982) 0 * * Os_TE_767270 Chr1 219284 219285 - NDNA1TNA_OS 334 0.0003 (1/2995) 0 * Os_TE_767269 Os_TE_767269 Chr1 219282 219281 + NDNA1TNA_OS 334 0.0003 (1/2995) 0 * Os_TE_767270 Os_TE_767262 Chr1 216068 216069 + COPIA2-LTR_OS 6433 0.0010 (3/2978) 0 * * Os_TE_767248 Chr1 215045 215046 - FOCUS 257 0.0081 (24/2978) 0 * * Os_TE_767247 Chr1 214928 214929 - MPING 430 0.0003 (1/2985) 0 * * Os_TE_767212 Chr1 197645 197646 + TWIFBIG 3567 0.0003 (1/2998) 0 * Os_TE_767211 Os_TE_767211 Chr1 197638 197637 - ORSiTETNOOT00199 3501 0.0003 (1/2998) 0 * Os_TE_767212 Os_TE_767203 Chr1 186121 186120 + STOWAWAY51_OS 246 0.0003 (1/2918) 0 * Os_TE_767202 Os_TE_767202 Chr1 186115 186116 + ORSgTEMT01601591 242 0.0003 (1/2895) 0 * Os_TE_767203 Os_TE_767201 Chr1 186070 184502 - MUDRN3_OS 903 0.7743 (2240/2893) 1 Intact * Os_TE_767189 Chr1 180572 180571 + STOWAWAY51_OS 246 0.0003 (1/2995) 0 * * Os_TE_767173 Chr1 177072 177073 + ORSgTEMT00501629 149 0.0031 (9/2890) 0 * * Os_TE_767167 Chr1 176444 176445 + BAJIELTR 4500 0.0026 (7/2644) 0 * * Os_TE_767124 Chr1 141883 141884 - ORSiTETNOOT00134 607 0.0003 (1/2960) 0 * * Os_TE_767123 Chr1 141592 141591 + TRUNCATOR 2918 0.0017 (5/2994) 0 * * Os_TE_767111 Chr1 135385 135384 + TWIFB1 3737 0.1290 (375/2908) 0 * * Os_TE_767109 Chr1 134875 134876 - RIREX_LTR 8828 0.0003 (1/2991) 0 * * Os_TE_767032 Chr1 87147 87148 + SC-8_LTR 4951 0.0003 (1/2996) 0 * Os_TE_767031 Os_TE_767031 Chr1 87143 87142 - SC-8_LTR 4951 0.0003 (1/2993) 0 * Os_TE_767032 Os_TE_767025 Chr1 82222 81986 - ORSgTEMT01601493 303 0.7504 (2047/2728) 1 Intact Os_TE_767024 Os_TE_767024 Chr1 81986 82222 - ORSgTEMT01601696 238 0.7817 (2331/2982) 1 Intact Os_TE_767025 Os_TE_766989 Chr1 54785 54786 - NDNA1TNA_OS 334 0.0004 (1/2372) 0 * Os_TE_766988 Os_TE_766988 Chr1 54783 54782 + NDNA1TNA_OS 334 0.0004 (1/2369) 0 * Os_TE_766989 Os_TE_766973 Chr1 43036 43037 + RETROSAT2LTR 12796 0.0003 (1/2998) 0 * Os_TE_766972 Os_TE_766972 Chr1 43034 43033 - RETROSAT2LTR 12796 0.0003 (1/2994) 0 * Os_TE_766973 Os_TE_766967 Chr1 39826 39825 - SC-3_LTR 5748 0.0003 (1/2993) 0 * * Os_TE_766943 Chr1 32862 32863 + RETROSAT2LTR 12796 0.0626 (187/2987) 0 * Os_TE_766942 Os_TE_766942 Chr1 32860 32859 - RETROSAT2LTR 12796 0.0665 (199/2993) 0 * Os_TE_766943 Os_TE_766932 Chr1 29051 29052 - NDNA2TNA_OS 346 0.1538 (460/2991) 0 * Os_TE_766931 Os_TE_766931 Chr1 29050 29049 + NDNA2TNA_OS 346 0.1556 (465/2988) 0 * Os_TE_766932 Os_TE_766928 Chr1 28720 28721 + INDITTO 263 0.0248 (70/2821) 0 * * Os_TE_766921 Chr1 25631 25632 + ORSiTERTOOT00296 5553 0.0003 (1/2999) 0 * * Os_TE_766907 Chr1 20048 20047 - CLOUD 734 0.0017 (5/2946) 0 * * Os_TE_766903 Chr1 12678 12677 + TWIFB1 3737 0.0003 (1/2991) 0 * * Os_TE_766893 Chr1 2962 2963 - ORSiTETNOOT00200 3563 0.0003 (1/2988) 0 * Os_TE_766892 Os_TE_766892 Chr1 2955 2954 + TWIFBIG 3567 0.0003 (1/2988) 0 * Os_TE_766893